DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.959e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.09924

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.1344	0.0768

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2030 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13589161	2L_13589161_SNP [dm3] 2L_13589161_SNP [dm6]	C	G	1.396e^-7	0.17	INTRON kuz
2L	13589218	2L_13589218_INS [dm3] 2L_13589218_INS [dm6]	A	ACCCAAACTA	1.812e^-7	0.17	INTRON kuz
2L	11250317	2L_11250317_SNP [dm3] 2L_11250317_SNP [dm6]	C	G	1.164e^-6	0.562	INTRON ab
2L	13589141	2L_13589141_SNP [dm3] 2L_13589141_SNP [dm6]	T	C	1.198e^-6	0.562	INTRON kuz
2L	13589194	2L_13589194_SNP [dm3] 2L_13589194_SNP [dm6]	A	G	2.882e^-6	0.787	INTRON kuz
2R	19745379	2R_19745379_SNP [dm3] 2R_23857856_SNP [dm6]	A	G	4.660e^-6	0.787	SYNONYMOUS_CODING bgcn UPSTREAM wibg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	13589035	2L_13589035_SNP [dm3] 2L_13589035_SNP [dm6]	T	C	4.905e^-6	0.787	INTRON kuz
2L	13589305	2L_13589305_DEL [dm3] 2L_13589305_DEL [dm6]	TT	T	4.910e^-6	0.787	INTRON kuz
2R	16512538	2R_16512538_SNP [dm3] 2R_20625033_SNP [dm6]	C	T	5.121e^-6	0.787	SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	13589848	2L_13589848_SNP [dm3] 2L_13589848_SNP [dm6]	C	T	5.333e^-6	0.787	INTRON kuz
3R	13187690	3R_13187690_SNP [dm3] 3R_17361968_SNP [dm6]	T	C	5.338e^-6	0.787	INTRON beat-IIa
2L	22686955	2L_22686955_SNP [dm3] 2L_22794223_SNP [dm6]	C	T	5.612e^-6	0.787	INTERGENIC
X	10817569	X_10817569_SNP [dm3] X_10923536_SNP [dm6]	A	T	5.723e^-6	0.787	UPSTREAM v DOWNSTREAM CG43901 INTERGENIC
3L	12201869	3L_12201869_SNP [dm3] 3L_12208769_SNP [dm6]	A	T	7.022e^-6	0.787	DOWNSTREAM app INTRON app
2R	17156990	2R_17156990_SNP [dm3] 2R_21269485_SNP [dm6]	A	G	7.213e^-6	0.787	INTRON Rgk3
2L	13588786	2L_13588786_SNP [dm3] 2L_13588786_SNP [dm6]	C	T	7.651e^-6	0.787	INTRON kuz
3L	16897538	3L_16897538_SNP [dm3] 3L_16904438_SNP [dm6]	G	A	8.200e^-6	0.787	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10217588	2R_10217588_SNP [dm3] 2R_14330083_SNP [dm6]	C	A	8.228e^-6	0.787	INTRON Shroom
3R	17689456	3R_17689456_SNP [dm3] 3R_21863734_SNP [dm6]	A	T	8.744e^-6	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10216933	2R_10216933_SNP [dm3] 2R_14329428_SNP [dm6]	C	T	9.022e^-6	0.787	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
3R	26088722	3R_26088722_SNP [dm3] 3R_30263000_SNP [dm6]	T	G	9.603e^-6	0.787	INTERGENIC
X	10817595	X_10817595_SNP [dm3] X_10923562_SNP [dm6]	G	T	1.016e^-5	0.787	UPSTREAM v DOWNSTREAM CG43901 INTERGENIC
3R	13659170	3R_13659170_DEL [dm3] 3R_17833448_DEL [dm6]	CCAGTGGTC	C	1.035e^-5	0.787	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	10109567	2R_10109567_SNP [dm3] 2R_14222062_SNP [dm6]	A	C	1.060e^-5	0.787	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13589637	2L_13589637_SNP [dm3] 2L_13589637_SNP [dm6]	G	A	1.134e^-5	0.787	INTRON kuz
2L	12368143	2L_12368143_SNP [dm3] 2L_12368143_SNP [dm6]	C	T	1.135e^-5	0.787	INTRON bru-2
3R	9626307	3R_9626307_SNP [dm3] 3R_13800585_SNP [dm6]	T	G	1.167e^-5	0.787	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17082278	2R_17082278_INS [dm3] 2R_21194773_INS [dm6]	T	TT	1.243e^-5	0.787	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13588975	2L_13588975_SNP [dm3] 2L_13588975_SNP [dm6]	G	T	1.267e^-5	0.787	INTRON kuz
3L	8390702	3L_8390702_SNP [dm3] 3L_8397602_SNP [dm6]	T	C	1.300e^-5	0.787	UPSTREAM CG7120 INTRON CG7120	transposable element FlyBase
2L	13587604	2L_13587604_SNP [dm3] 2L_13587604_SNP [dm6]	C	T	1.336e^-5	0.787	INTRON kuz
3L	21859502	3L_21859502_SNP [dm3] 3L_21866402_SNP [dm6]	G	A	1.470e^-5	0.787	INTRON mub
2R	10215901	2R_10215901_SNP [dm3] 2R_14328396_SNP [dm6]	C	T	1.477e^-5	0.787	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11975642	2L_11975642_SNP [dm3] 2L_11975642_SNP [dm6]	A	G	1.483e^-5	0.787	INTERGENIC
3R	19001407	3R_19001407_SNP [dm3] 3R_23175685_SNP [dm6]	C	T	1.554e^-5	0.787	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9526105	3R_9526105_SNP [dm3] 3R_13700383_SNP [dm6]	T	C	1.654e^-5	0.787	UPSTREAM f-cup & 1 other INTRON f-cup	TF binding site BDTNP1_TFBS_bcd
X	14442539	X_14442539_SNP [dm3] X_14548506_SNP [dm6]	C	T	1.684e^-5	0.787	INTERGENIC
2R	10194788	2R_10194788_DEL [dm3] 2R_14307283_DEL [dm6]	CGTCCCTTCCCC...	C	1.697e^-5	0.787	UPSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3934761	2L_3934761_SNP [dm3] 2L_3934761_SNP [dm6]	A	T	1.747e^-5	0.787	INTRON fred
X	10817560	X_10817560_SNP [dm3] X_10923527_SNP [dm6]	G	A	1.770e^-5	0.787	UPSTREAM v DOWNSTREAM CG43901 INTERGENIC
3L	4959657	3L_4959657_SNP [dm3] 3L_4959657_SNP [dm6]	G	A	1.830e^-5	0.787	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20425479	3R_20425479_SNP [dm3] 3R_24599757_SNP [dm6]	A	T	1.880e^-5	0.787	INTRON mld	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	8778531	X_8778531_DEL [dm3] X_8884498_DEL [dm6]	TCATCCAT	T	1.898e^-5	0.787	INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4959654	3L_4959654_SNP [dm3] 3L_4959654_SNP [dm6]	A	G	1.900e^-5	0.787	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11442116	2L_11442116_SNP [dm3] 2L_11442116_SNP [dm6]	A	G	2.004e^-5	0.787	INTRON salm	TF binding site mE1_TFBS_inv
X	20345730	X_20345730_SNP [dm3] X_20474703_SNP [dm6]	A	C	2.044e^-5	0.787	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3934759	2L_3934759_SNP [dm3] 2L_3934759_SNP [dm6]	A	G	2.113e^-5	0.787	INTRON fred
2R	10109549	2R_10109549_SNP [dm3] 2R_14222044_SNP [dm6]	C	G	2.119e^-5	0.787	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14358656	2R_14358656_SNP [dm3] 2R_18471151_SNP [dm6]	T	A	2.150e^-5	0.787	INTRON CG30116
3R	18396641	3R_18396641_SNP [dm3] 3R_22570919_SNP [dm6]	G	T	2.185e^-5	0.787	INTRON CG33110
2R	10214496	2R_10214496_SNP [dm3] 2R_14326991_SNP [dm6]	C	T	2.186e^-5	0.787	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
3R	16179236	3R_16179236_INS [dm3] 3R_20353514_INS [dm6]	G	GGCGG	2.270e^-5	0.787	INTERGENIC
2R	6091279	2R_6091279_SNP [dm3] 2R_10203774_SNP [dm6]	T	A	2.338e^-5	0.787	DOWNSTREAM Hr46 INTERGENIC
2R	19749207	2R_19749207_SNP [dm3] 2R_23861684_SNP [dm6]	T	C	2.387e^-5	0.787	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	6573438	3L_6573438_SNP [dm3] 3L_6580338_SNP [dm6]	T	C	2.416e^-5	0.787	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7019432	2L_7019432_SNP [dm3] 2L_7019432_SNP [dm6]	C	T	2.479e^-5	0.787	INTRON ade3	TF binding site mE1_TFBS_chinmo
3L	16277276	3L_16277276_SNP [dm3] 3L_16284176_SNP [dm6]	T	G	2.525e^-5	0.787	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3R	17774533	3R_17774533_SNP [dm3] 3R_21948811_SNP [dm6]	T	C	2.561e^-5	0.787	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17286287	3L_17286287_SNP [dm3] 3L_17293187_SNP [dm6]	C	T	2.577e^-5	0.787	INTERGENIC
3R	13895798	3R_13895798_SNP [dm3] 3R_18070076_SNP [dm6]	G	C	2.627e^-5	0.787	INTERGENIC
3R	6572596	3R_6572596_SNP [dm3] 3R_10746874_SNP [dm6]	A	T	2.661e^-5	0.787	INTRON TkR86C
2R	19074738	2R_19074738_SNP [dm3] 2R_23187215_SNP [dm6]	G	A	2.702e^-5	0.787	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	19749128	2R_19749128_SNP [dm3] 2R_23861605_SNP [dm6]	T	G	2.719e^-5	0.787	START_GAINED TBPH UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	24139041	3R_24139041_SNP [dm3] 3R_28313319_SNP [dm6]	A	G	2.770e^-5	0.787	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9922235	3R_9922235_SNP [dm3] 3R_14096513_SNP [dm6]	G	A	2.775e^-5	0.787	DOWNSTREAM CG9920 INTRON CCHa1
3R	13418284	3R_13418284_DEL [dm3] 3R_17592562_DEL [dm6]	TT	T	2.776e^-5	0.787	INTERGENIC
3L	16277225	3L_16277225_SNP [dm3] 3L_16284125_SNP [dm6]	C	A	2.857e^-5	0.787	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3R	19625421	3R_19625421_SNP [dm3] 3R_23799699_SNP [dm6]	A	G	2.875e^-5	0.787	INTRON mbc
3L	17291654	3L_17291654_SNP [dm3] 3L_17298554_SNP [dm6]	G	T	2.905e^-5	0.787	INTERGENIC
3R	18783906	3R_18783906_SNP [dm3] 3R_22958184_SNP [dm6]	A	C	2.943e^-5	0.787	INTRON klg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16179247	3R_16179247_SNP [dm3] 3R_20353525_SNP [dm6]	A	G	2.978e^-5	0.787	INTERGENIC
X	9462622	X_9462622_SNP [dm3] X_9568589_SNP [dm6]	C	A	3.041e^-5	0.792	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9922147	3R_9922147_SNP [dm3] 3R_14096425_SNP [dm6]	G	A	3.131e^-5	0.794	DOWNSTREAM CG9920 INTRON CCHa1
X	11322538	X_11322538_SNP [dm3] X_11428505_SNP [dm6]	C	A	3.288e^-5	0.794	INTRON Gs2
3R	19946648	3R_19946648_SNP [dm3] 3R_24120926_SNP [dm6]	A	G	3.313e^-5	0.794	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
2L	7634591	2L_7634591_SNP [dm3] 2L_7634591_SNP [dm6]	G	A	3.354e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25214173	3R_25214173_SNP [dm3] 3R_29388451_SNP [dm6]	C	A	3.361e^-5	0.794	INTRON Ptp99A
3R	12625229	3R_12625229_SNP [dm3] 3R_16799507_SNP [dm6]	T	C	3.377e^-5	0.794	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	2756388	2R_2756388_SNP [dm3] 2R_6868883_SNP [dm6]	C	T	3.527e^-5	0.794	INTRON coro
2R	19793466	2R_19793466_SNP [dm3] 2R_23905943_SNP [dm6]	T	C	3.545e^-5	0.794	SYNONYMOUS_CODING Nap1 DOWNSTREAM CG13562	TF binding site mE1_TFBS_jumu mE1_TFBS_sens
3L	10009222	3L_10009222_SNP [dm3] 3L_10016122_SNP [dm6]	T	C	3.598e^-5	0.794	INTRON dpr6
X	19373096	X_19373096_SNP [dm3] X_19479063_SNP [dm6]	A	G	3.653e^-5	0.794	SYNONYMOUS_CODING CG32533 UPSTREAM Nat1 DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8590006	2R_8590006_SNP [dm3] 2R_12702501_SNP [dm6]	C	A	3.669e^-5	0.794	INTERGENIC
3L	5248466	3L_5248466_SNP [dm3] 3L_5255366_SNP [dm6]	C	T	3.782e^-5	0.794	INTRON shep
X	8749070	X_8749070_SNP [dm3] X_8855037_SNP [dm6]	A	T	3.791e^-5	0.794	INTRON CG12075
3R	17774513	3R_17774513_INS [dm3] 3R_21948791_INS [dm6]	T	TT	3.794e^-5	0.794	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7432941	3L_7432941_SNP [dm3] 3L_7439841_SNP [dm6]	T	A	3.819e^-5	0.794	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
X	20345718	X_20345718_SNP [dm3] X_20474691_SNP [dm6]	G	A	3.835e^-5	0.794	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25130577	3R_25130577_SNP [dm3] 3R_29304855_SNP [dm6]	A	G	3.853e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10621974	2L_10621974_SNP [dm3] 2L_10621974_SNP [dm6]	C	T	3.881e^-5	0.794	INTRON Trim9
2R	10033942	2R_10033942_SNP [dm3] 2R_14146437_SNP [dm6]	T	A	3.882e^-5	0.794	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19001420	3R_19001420_SNP [dm3] 3R_23175698_SNP [dm6]	A	T	3.934e^-5	0.794	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20335235	X_20335235_SNP [dm3] X_20464208_SNP [dm6]	G	A	3.975e^-5	0.794	SYNONYMOUS_CODING CG32506
3L	4959649	3L_4959649_SNP [dm3] 3L_4959649_SNP [dm6]	A	G	3.979e^-5	0.794	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4959622	3L_4959622_SNP [dm3] 3L_4959622_SNP [dm6]	A	G	4.079e^-5	0.799	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17132976	2R_17132976_SNP [dm3] 2R_21245471_SNP [dm6]	G	C	4.198e^-5	0.799	INTRON ASPP	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13775652	2R_13775652_SNP [dm3] 2R_17888147_SNP [dm6]	A	T	4.243e^-5	0.799	SYNONYMOUS_CODING PPO1 INTRON Elk	TF binding site mE1_TFBS_cad
3L	12576764	3L_12576764_SNP [dm3] 3L_12583664_SNP [dm6]	C	T	4.268e^-5	0.799	INTRON ara
X	2985786	X_2985786_DEL [dm3] X_3091753_DEL [dm6]	TGGCGGC	T	4.339e^-5	0.799	INTRON kirre	regulatory region REDfly_CRMs
3R	9265392	3R_9265392_SNP [dm3] 3R_13439670_SNP [dm6]	A	G	4.345e^-5	0.799	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25485582	3R_25485582_SNP [dm3] 3R_29659860_SNP [dm6]	A	T	4.485e^-5	0.799	UTR_5_PRIME Dop1R2
3R	11285188	3R_11285188_SNP [dm3] 3R_15459466_SNP [dm6]	A	C	4.487e^-5	0.799	INTRON AdamTS-A
2R	14358622	2R_14358622_SNP [dm3] 2R_18471117_SNP [dm6]	A	C	4.525e^-5	0.799	INTRON CG30116
3R	26460930	3R_26460930_SNP [dm3] 3R_30635208_SNP [dm6]	G	A	4.540e^-5	0.799	INTERGENIC
3L	12568126	3L_12568126_INS [dm3] 3L_12575026_INS [dm6]	A	ATCAAAGTCA	4.563e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20542729	3L_20542729_SNP [dm3] 3L_20549629_SNP [dm6]	A	G	4.567e^-5	0.799	INTERGENIC
2L	12368159	2L_12368159_INS [dm3] 2L_12368159_INS [dm6]	G	GCCTACTAAAATCACAAAGT...	4.653e^-5	0.799	INTRON bru-2
X	5249465	X_5249465_SNP [dm3] X_5355432_SNP [dm6]	A	T	4.667e^-5	0.799	INTRON SK
3L	4959607	3L_4959607_SNP [dm3] 3L_4959607_SNP [dm6]	G	T	4.686e^-5	0.799	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14719439	3R_14719439_SNP [dm3] 3R_18893717_SNP [dm6]	G	A	4.744e^-5	0.799	INTERGENIC
3R	12366106	3R_12366106_SNP [dm3] 3R_16540384_SNP [dm6]	T	C	4.874e^-5	0.799	INTRON CG42342
X	19374073	X_19374073_SNP [dm3] X_19480040_SNP [dm6]	T	A	4.874e^-5	0.799	UTR_5_PRIME mRpS14 & 1 other UPSTREAM Nat1 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	19564940	X_19564940_SNP [dm3] X_19670907_SNP [dm6]	G	A	4.944e^-5	0.799	SYNONYMOUS_CODING Zw	TF binding site mE1_TFBS_chinmo
3L	20542845	3L_20542845_SNP [dm3] 3L_20549745_SNP [dm6]	A	T	4.984e^-5	0.799	INTERGENIC
2R	16512526	2R_16512526_SNP [dm3] 2R_20625021_SNP [dm6]	A	G	4.998e^-5	0.799	SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
3L	12568208	3L_12568208_SNP [dm3] 3L_12575108_SNP [dm6]	G	A	5.085e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3032753	X_3032753_SNP [dm3] X_3138720_SNP [dm6]	T	C	5.136e^-5	0.799	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19946650	3R_19946650_SNP [dm3] 3R_24120928_SNP [dm6]	G	A	5.148e^-5	0.799	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
2R	10214427	2R_10214427_SNP [dm3] 2R_14326922_SNP [dm6]	T	C	5.204e^-5	0.799	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
2L	7635075	2L_7635075_SNP [dm3] 2L_7635075_SNP [dm6]	C	A	5.215e^-5	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2668595	3L_2668595_SNP [dm3] 3L_2668595_SNP [dm6]	T	G	5.231e^-5	0.799	INTRON Fife
2L	13583620	2L_13583620_SNP [dm3] 2L_13583620_SNP [dm6]	G	A	5.255e^-5	0.799	DOWNSTREAM CR44973 INTRON kuz
X	9462638	X_9462638_SNP [dm3] X_9568605_SNP [dm6]	G	T	5.313e^-5	0.799	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14613071	3R_14613071_SNP [dm3] 3R_18787349_SNP [dm6]	A	C	5.341e^-5	0.799	INTRON CG7720
2R	19744367	2R_19744367_SNP [dm3] 2R_23856844_SNP [dm6]	A	G	5.355e^-5	0.799	SYNONYMOUS_CODING wibg INTRON bgcn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8587286	2R_8587286_SNP [dm3] 2R_12699781_SNP [dm6]	C	T	5.369e^-5	0.799	UPSTREAM wuc INTERGENIC
2R	8605035	2R_8605035_SNP [dm3] 2R_12717530_SNP [dm6]	C	T	5.428e^-5	0.802	INTRON CG42663	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17804170	2R_17804170_SNP [dm3] 2R_21916665_SNP [dm6]	C	G	5.543e^-5	0.811	INTRON Fili
3L	5248470	3L_5248470_SNP [dm3] 3L_5255370_SNP [dm6]	C	G	5.578e^-5	0.811	INTRON shep
2L	10102728	2L_10102728_SNP [dm3] 2L_10102728_SNP [dm6]	A	G	5.748e^-5	0.821	INTRON CG44153 & 1 other
2L	13626041	2L_13626041_SNP [dm3] 2L_13626041_SNP [dm6]	G	A	5.850e^-5	0.821	INTRON kuz
3R	12366082	3R_12366082_SNP [dm3] 3R_16540360_SNP [dm6]	T	A	5.864e^-5	0.821	INTRON CG42342
2R	17188251	2R_17188251_SNP [dm3] 2R_21300746_SNP [dm6]	A	T	6.040e^-5	0.821	INTRON CG42672
2L	22683794	2L_22683794_SNP [dm3] 2L_22791062_SNP [dm6]	C	A	6.052e^-5	0.821	INTERGENIC
2L	11917911	2L_11917911_SNP [dm3] 2L_11917911_SNP [dm6]	T	A	6.060e^-5	0.821	INTRON Pde1c
2R	18562932	2R_18562932_SNP [dm3] 2R_22675427_SNP [dm6]	C	A	6.182e^-5	0.821	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	9964668	2R_9964668_SNP [dm3] 2R_14077163_SNP [dm6]	G	C	6.279e^-5	0.821	INTRON Prosap
3L	12568234	3L_12568234_DEL [dm3] 3L_12575134_DEL [dm6]	ACTTAGTTTTATGTGA...	T	6.301e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	8590007	2R_8590007_SNP [dm3] 2R_12702502_SNP [dm6]	A	C	6.409e^-5	0.821	INTERGENIC
2R	19749404	2R_19749404_SNP [dm3] 2R_23861881_SNP [dm6]	G	A	6.414e^-5	0.821	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14358627	2R_14358627_SNP [dm3] 2R_18471122_SNP [dm6]	C	G	6.435e^-5	0.821	INTRON CG30116
3R	13474664	3R_13474664_SNP [dm3] 3R_17648942_SNP [dm6]	A	G	6.437e^-5	0.821	INTRON CG14322
3R	13753865	3R_13753865_SNP [dm3] 3R_17928143_SNP [dm6]	C	A	6.533e^-5	0.821	INTRON cpo
3L	1117671	3L_1117671_INS [dm3] 3L_1117671_INS [dm6]	A	AAAGA	6.547e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12733386	3R_12733386_SNP [dm3] 3R_16907664_SNP [dm6]	A	G	6.591e^-5	0.821	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13588756	2L_13588756_DEL [dm3] 2L_13588756_DEL [dm6]	TGACTT	T	6.601e^-5	0.821	INTRON kuz
2R	19749376	2R_19749376_SNP [dm3] 2R_23861853_SNP [dm6]	T	A	6.630e^-5	0.821	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16953869	2R_16953869_SNP [dm3] 2R_21066364_SNP [dm6]	C	T	6.637e^-5	0.821	SPLICE_SITE_REGION Cht4 INTRON Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17188238	2R_17188238_SNP [dm3] 2R_21300733_SNP [dm6]	T	C	6.644e^-5	0.821	INTRON CG42672
2R	9343767	2R_9343767_SNP [dm3] 2R_13456262_SNP [dm6]	C	G	6.843e^-5	0.821	INTRON arr
3L	6639978	3L_6639978_SNP [dm3] 3L_6646878_SNP [dm6]	G	A	6.871e^-5	0.821	INTERGENIC
2R	15310293	2R_15310293_SNP [dm3] 2R_19422788_SNP [dm6]	T	A	6.892e^-5	0.821	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	25915642	3R_25915642_SNP [dm3] 3R_30089920_SNP [dm6]	C	T	6.941e^-5	0.821	INTRON sima	TF binding site mE1_TFBS_Trl
3L	7834608	3L_7834608_SNP [dm3] 3L_7841508_SNP [dm6]	A	T	7.047e^-5	0.821	INTRON Pdp1	regulatory region REDfly_CRMs
2R	10215795	2R_10215795_SNP [dm3] 2R_14328290_SNP [dm6]	A	T	7.050e^-5	0.821	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13588435	2L_13588435_SNP [dm3] 2L_13588435_SNP [dm6]	C	A	7.058e^-5	0.821	INTRON kuz
3R	12183363	3R_12183363_INS [dm3] 3R_16357641_INS [dm6]	G	GT	7.157e^-5	0.821	UTR_3_PRIME CG17931 UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other
2L	13588813	2L_13588813_SNP [dm3] 2L_13588813_SNP [dm6]	G	A	7.327e^-5	0.821	INTRON kuz
3R	25796569	3R_25796569_SNP [dm3] 3R_29970847_SNP [dm6]	T	C	7.426e^-5	0.821	INTERGENIC
X	21874516	X_21874516_MNP [dm3] X_22472680_MNP [dm6]	CAC	TCT	7.470e^-5	0.821	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14359948	2R_14359948_SNP [dm3] 2R_18472443_SNP [dm6]	G	C	7.525e^-5	0.821	INTRON CG30116
2R	19074832	2R_19074832_SNP [dm3] 2R_23187309_SNP [dm6]	G	A	7.577e^-5	0.821	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	11177584	2L_11177584_SNP [dm3] 2L_11177584_SNP [dm6]	A	T	7.601e^-5	0.821	INTRON Ca-beta
X	4097196	X_4097196_SNP [dm3] X_4203163_SNP [dm6]	C	T	7.624e^-5	0.821	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5912585	X_5912585_SNP [dm3] X_6018552_SNP [dm6]	C	T	7.667e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_sens
3R	18649686	3R_18649686_SNP [dm3] 3R_22823964_SNP [dm6]	C	G	7.699e^-5	0.821	EXON CR44350	TF binding site mE1_TFBS_inv
3R	14598679	3R_14598679_SNP [dm3] 3R_18772957_SNP [dm6]	C	T	7.718e^-5	0.821	INTRON CG7720
3R	2845681	3R_2845681_SNP [dm3] 3R_7019959_SNP [dm6]	G	C	7.737e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12733519	3R_12733519_SNP [dm3] 3R_16907797_SNP [dm6]	G	T	7.778e^-5	0.821	INTRON iab-8	TF binding site mE1_TFBS_HSA
3L	16514993	3L_16514993_SNP [dm3] 3L_16521893_SNP [dm6]	G	A	7.797e^-5	0.821	INTRON CG43373
3R	13672132	3R_13672132_SNP [dm3] 3R_17846410_SNP [dm6]	A	T	7.990e^-5	0.821	INTRON tinc
2R	19744289	2R_19744289_SNP [dm3] 2R_23856766_SNP [dm6]	C	T	8.060e^-5	0.821	SYNONYMOUS_CODING wibg INTRON bgcn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12365953	3R_12365953_SNP [dm3] 3R_16540231_SNP [dm6]	A	T	8.079e^-5	0.821	INTRON CG42342
2R	6197159	2R_6197159_SNP [dm3] 2R_10309654_SNP [dm6]	C	T	8.091e^-5	0.821	NON_SYNONYMOUS_CODING JhI-1 UPSTREAM CG12909	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	9462611	X_9462611_SNP [dm3] X_9568578_SNP [dm6]	G	A	8.318e^-5	0.821	SPLICE_SITE_REGION Cubn INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12733584	3R_12733584_DEL [dm3] 3R_16907862_DEL [dm6]	TT	T	8.331e^-5	0.821	INTRON iab-8	TF binding site mE1_TFBS_HSA
3L	11777090	3L_11777090_SNP [dm3] 3L_11783990_SNP [dm6]	C	A	8.383e^-5	0.821	SYNONYMOUS_CODING Pi3K68D
3L	16515333	3L_16515333_SNP [dm3] 3L_16522233_SNP [dm6]	C	G	8.390e^-5	0.821	INTRON CG43373
X	7696608	X_7696608_SNP [dm3] X_7802575_SNP [dm6]	T	C	8.444e^-5	0.821	INTERGENIC
2R	16512501	2R_16512501_SNP [dm3] 2R_20624996_SNP [dm6]	A	C	8.455e^-5	0.821	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	10296962	2L_10296962_SNP [dm3] 2L_10296962_SNP [dm6]	T	A	8.455e^-5	0.821	SYNONYMOUS_CODING CYLD UPSTREAM CR44968
3R	23378094	3R_23378094_SNP [dm3] 3R_27552372_SNP [dm6]	A	G	8.511e^-5	0.821	INTRON Klp98A	TF binding site mE1_TFBS_cad
3L	7834278	3L_7834278_SNP [dm3] 3L_7841178_SNP [dm6]	C	T	8.538e^-5	0.821	INTRON Pdp1	regulatory region REDfly_CRMs
2R	19743021	2R_19743021_DEL [dm3] 2R_23855498_DEL [dm6]	ATGACG	A	8.596e^-5	0.821	DOWNSTREAM wibg INTRON bgcn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7696620	X_7696620_SNP [dm3] X_7802587_SNP [dm6]	T	C	8.610e^-5	0.821	INTERGENIC
3R	11489204	3R_11489204_SNP [dm3] 3R_15663482_SNP [dm6]	G	A	8.744e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	16515262	3L_16515262_SNP [dm3] 3L_16522162_SNP [dm6]	C	T	8.928e^-5	0.821	INTRON CG43373
2R	16610796	2R_16610796_SNP [dm3] 2R_20723291_SNP [dm6]	T	C	8.940e^-5	0.821	DOWNSTREAM CR44660 INTRON dpr
2L	10283260	2L_10283260_SNP [dm3] 2L_10283260_SNP [dm6]	C	A	8.942e^-5	0.821	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3R	14596790	3R_14596790_INS [dm3] 3R_18771068_INS [dm6]	T	TGCGTGCCAGCTTGCGTGCA...	8.988e^-5	0.821	INTRON CG7720
3R	18650373	3R_18650373_SNP [dm3] 3R_22824651_SNP [dm6]	T	C	9.024e^-5	0.821	EXON CR44350	TF binding site mE1_TFBS_inv
3L	12568183	3L_12568183_SNP [dm3] 3L_12575083_SNP [dm6]	A	T	9.115e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17077976	3R_17077976_DEL [dm3] 3R_21252254_DEL [dm6]	CA	C	9.286e^-5	0.821	INTRON ETHR
3R	19001250	3R_19001250_SNP [dm3] 3R_23175528_SNP [dm6]	C	G	9.308e^-5	0.821	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9462628	X_9462628_SNP [dm3] X_9568595_SNP [dm6]	G	A	9.375e^-5	0.821	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9792308	2R_9792308_SNP [dm3] 2R_13904803_SNP [dm6]	A	G	9.382e^-5	0.821	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8641030	3L_8641030_SNP [dm3] 3L_8647930_SNP [dm6]	G	T	9.409e^-5	0.821	INTRON Pex7 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14996775	2L_14996775_INS [dm3] 2L_14996775_INS [dm6]	T	TT	9.415e^-5	0.821	UTR_5_PRIME mol INTRON mol
2L	11250921	2L_11250921_SNP [dm3] 2L_11250921_SNP [dm6]	A	C	9.496e^-5	0.821	INTRON ab
2R	9971751	2R_9971751_DEL [dm3] 2R_14084246_DEL [dm6]	CT	C	9.509e^-5	0.821	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	7432919	3L_7432919_SNP [dm3] 3L_7439819_SNP [dm6]	A	T	9.663e^-5	0.821	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2R	19110396	2R_19110396_SNP [dm3] 2R_23222873_SNP [dm6]	G	A	9.669e^-5	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16515213	3L_16515213_SNP [dm3] 3L_16522113_SNP [dm6]	G	A	9.810e^-5	0.821	INTRON CG43373
3L	7432884	3L_7432884_SNP [dm3] 3L_7439784_SNP [dm6]	G	A	9.830e^-5	0.821	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458
3R	1756341	3R_1756341_SNP [dm3] 3R_5930619_SNP [dm6]	C	T	9.960e^-5	0.821	INTRON CG34113
2L	3934679	2L_3934679_SNP [dm3] 2L_3934679_SNP [dm6]	A	G	9.962e^-5	0.821	INTRON fred
3L	7432933	3L_7432933_SNP [dm3] 3L_7439833_SNP [dm6]	G	A	9.980e^-5	0.821	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2R	15310295	2R_15310295_SNP [dm3] 2R_19422790_SNP [dm6]	T	A	1.001e^-4	0.821	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	19753567	2R_19753567_SNP [dm3] 2R_23866044_SNP [dm6]	C	T	1.002e^-4	0.821	UPSTREAM CG4585 DOWNSTREAM Thiolase INTRON CG5569
3L	9396984	3L_9396984_SNP [dm3] 3L_9403884_SNP [dm6]	C	T	1.005e^-4	0.821	UPSTREAM Cpr67B INTERGENIC
3L	16724896	3L_16724896_SNP [dm3] 3L_16731796_SNP [dm6]	A	G	1.008e^-4	0.821	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9528946	3R_9528946_SNP [dm3] 3R_13703224_SNP [dm6]	C	T	1.009e^-4	0.821	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
2L	10102757	2L_10102757_SNP [dm3] 2L_10102757_SNP [dm6]	A	G	1.011e^-4	0.821	INTRON CG44153 & 1 other
X	9462650	X_9462650_SNP [dm3] X_9568617_SNP [dm6]	T	A	1.012e^-4	0.821	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17264215	2R_17264215_SNP [dm3] 2R_21376710_SNP [dm6]	C	A	1.013e^-4	0.821	INTRON cv-2
2R	16515081	2R_16515081_SNP [dm3] 2R_20627576_SNP [dm6]	T	A	1.026e^-4	0.821	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
3R	12625182	3R_12625182_SNP [dm3] 3R_16799460_SNP [dm6]	T	C	1.028e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	14566157	X_14566157_SNP [dm3] X_14672124_SNP [dm6]	G	A	1.043e^-4	0.821	INTERGENIC
2R	16083752	2R_16083752_SNP [dm3] 2R_20196247_SNP [dm6]	C	A	1.045e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16727448	2L_16727448_SNP [dm3] 2L_16727448_SNP [dm6]	C	T	1.046e^-4	0.821	SYNONYMOUS_CODING VhaSFD DOWNSTREAM CR43671	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14566103	X_14566103_SNP [dm3] X_14672070_SNP [dm6]	A	G	1.047e^-4	0.821	INTERGENIC
2R	11761020	2R_11761020_SNP [dm3] 2R_15873515_SNP [dm6]	G	C	1.055e^-4	0.821	INTRON sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	7204630	2R_7204630_SNP [dm3] 2R_11317125_SNP [dm6]	C	G	1.058e^-4	0.821	SYNONYMOUS_CODING nompA
2R	10633734	2R_10633734_SNP [dm3] 2R_14746229_SNP [dm6]	T	C	1.059e^-4	0.821	UTR_3_PRIME Dro UPSTREAM CG12858
3L	16515337	3L_16515337_SNP [dm3] 3L_16522237_SNP [dm6]	G	C	1.064e^-4	0.821	INTRON CG43373
3L	7834547	3L_7834547_SNP [dm3] 3L_7841447_SNP [dm6]	T	A	1.064e^-4	0.821	INTRON Pdp1	regulatory region REDfly_CRMs
2L	15173926	2L_15173926_SNP [dm3] 2L_15173926_SNP [dm6]	G	C	1.066e^-4	0.821	INTRON CG4168
3R	22819841	3R_22819841_DEL [dm3] 3R_26994119_DEL [dm6]	TTTCGTATTTCCCGTT...	T	1.070e^-4	0.821	UPSTREAM TwdlC INTERGENIC
3R	13868579	3R_13868579_SNP [dm3] 3R_18042857_SNP [dm6]	A	G	1.076e^-4	0.821	INTERGENIC
2R	11387538	2R_11387538_SNP [dm3] 2R_15500033_SNP [dm6]	G	T	1.079e^-4	0.821	SYNONYMOUS_CODING Ir52a
3L	695510	3L_695510_SNP [dm3] 3L_695510_SNP [dm6]	G	C	1.082e^-4	0.821	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16377382	2R_16377382_SNP [dm3] 2R_20489877_SNP [dm6]	A	T	1.084e^-4	0.821	INTERGENIC
3L	4423402	3L_4423402_SNP [dm3] 3L_4423402_SNP [dm6]	G	A	1.089e^-4	0.821	INTRON CG15020
X	12772884	X_12772884_SNP [dm3] X_12878851_SNP [dm6]	C	A	1.100e^-4	0.821	INTRON Pde9
3R	25916547	3R_25916547_SNP [dm3] 3R_30090825_SNP [dm6]	A	G	1.105e^-4	0.821	INTRON sima	TF binding site mE1_TFBS_Trl
X	8370159	X_8370159_SNP [dm3] X_8476126_SNP [dm6]	A	G	1.112e^-4	0.821	UPSTREAM Cp7Fc DOWNSTREAM Cp7Fb INTRON CG33223
2R	19074800	2R_19074800_SNP [dm3] 2R_23187277_SNP [dm6]	C	T	1.117e^-4	0.821	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	7438454	3L_7438454_SNP [dm3] 3L_7445354_SNP [dm6]	A	G	1.117e^-4	0.821	UTR_5_PRIME CG42458
2L	10102708	2L_10102708_SNP [dm3] 2L_10102708_SNP [dm6]	T	A	1.122e^-4	0.821	INTRON CG44153 & 1 other
2R	10109849	2R_10109849_DEL [dm3] 2R_14222344_DEL [dm6]	ATCTTTAA	A	1.124e^-4	0.821	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12731511	3R_12731511_SNP [dm3] 3R_16905789_SNP [dm6]	C	A	1.125e^-4	0.821	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25213787	3R_25213787_SNP [dm3] 3R_29388065_SNP [dm6]	G	A	1.125e^-4	0.821	INTRON Ptp99A
3L	14514058	3L_14514058_SNP [dm3] 3L_14520958_SNP [dm6]	T	A	1.127e^-4	0.821	INTRON bbg & 1 other
3R	25520102	3R_25520102_SNP [dm3] 3R_29694380_SNP [dm6]	G	A	1.128e^-4	0.821	INTRON dmrt99B
2R	9805778	2R_9805778_SNP [dm3] 2R_13918273_SNP [dm6]	C	T	1.131e^-4	0.821	INTRON shot
3R	13753845	3R_13753845_SNP [dm3] 3R_17928123_SNP [dm6]	A	G	1.133e^-4	0.821	INTRON cpo
3L	4421044	3L_4421044_SNP [dm3] 3L_4421044_SNP [dm6]	T	A	1.134e^-4	0.821	UPSTREAM CG15020 DOWNSTREAM DOR INTERGENIC
2R	9343792	2R_9343792_SNP [dm3] 2R_13456287_SNP [dm6]	T	C	1.136e^-4	0.821	INTRON arr
3L	12202232	3L_12202232_SNP [dm3] 3L_12209132_SNP [dm6]	T	A	1.139e^-4	0.821	UTR_3_PRIME app INTRON app
2R	14611090	2R_14611090_SNP [dm3] 2R_18723585_SNP [dm6]	G	C	1.140e^-4	0.821	INTRON Hs3st-A
2L	2941504	2L_2941504_SNP [dm3] 2L_2941504_SNP [dm6]	A	T	1.149e^-4	0.821	INTRON lilli	TF binding site mE1_TFBS_inv
3R	27208275	3R_27208275_SNP [dm3] 3R_31382553_SNP [dm6]	T	C	1.155e^-4	0.821	INTRON CG1607
2R	16515074	2R_16515074_SNP [dm3] 2R_20627569_SNP [dm6]	A	T	1.156e^-4	0.821	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
3R	24820036	3R_24820036_SNP [dm3] 3R_28994314_SNP [dm6]	C	G	1.163e^-4	0.821	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19766036	3R_19766036_SNP [dm3] 3R_23940314_SNP [dm6]	T	A	1.167e^-4	0.821	INTRON Gdh
2L	11707088	2L_11707088_SNP [dm3] 2L_11707088_SNP [dm6]	G	A	1.170e^-4	0.821	INTERGENIC
3R	13775217	3R_13775217_SNP [dm3] 3R_17949495_SNP [dm6]	A	T	1.170e^-4	0.821	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9971643	2R_9971643_SNP [dm3] 2R_14084138_SNP [dm6]	G	A	1.171e^-4	0.821	INTRON Prosap
3R	27430964	3R_27430964_SNP [dm3] 3R_31605242_SNP [dm6]	C	T	1.174e^-4	0.821	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9462660	X_9462660_SNP [dm3] X_9568627_SNP [dm6]	A	G	1.178e^-4	0.821	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19373384	X_19373384_SNP [dm3] X_19479351_SNP [dm6]	A	C	1.183e^-4	0.821	UTR_5_PRIME CG32533 UPSTREAM Nat1 & 1 other DOWNSTREAM mRpS14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	12576362	3L_12576362_SNP [dm3] 3L_12583262_SNP [dm6]	A	C	1.184e^-4	0.821	INTRON ara
2R	15444709	2R_15444709_SNP [dm3] 2R_19557204_SNP [dm6]	G	A	1.185e^-4	0.821	INTRON sm
3L	11777099	3L_11777099_SNP [dm3] 3L_11783999_SNP [dm6]	G	T	1.186e^-4	0.821	SYNONYMOUS_CODING Pi3K68D
3R	9528943	3R_9528943_SNP [dm3] 3R_13703221_SNP [dm6]	G	A	1.188e^-4	0.821	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
3L	7834574	3L_7834574_SNP [dm3] 3L_7841474_SNP [dm6]	T	C	1.188e^-4	0.821	INTRON Pdp1	regulatory region REDfly_CRMs
X	14515783	X_14515783_SNP [dm3] X_14621750_SNP [dm6]	C	G	1.191e^-4	0.821	INTRON NetA
2R	19753564	2R_19753564_SNP [dm3] 2R_23866041_SNP [dm6]	T	G	1.195e^-4	0.821	UPSTREAM CG4585 DOWNSTREAM Thiolase INTRON CG5569
X	21875378	X_21875378_SNP [dm3] X_22473542_SNP [dm6]	C	T	1.196e^-4	0.821	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21520163	3R_21520163_SNP [dm3] 3R_25694441_SNP [dm6]	C	T	1.207e^-4	0.821	INTERGENIC
3L	9021314	3L_9021314_SNP [dm3] 3L_9028214_SNP [dm6]	A	T	1.208e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	18326371	2R_18326371_SNP [dm3] 2R_22438866_SNP [dm6]	G	A	1.212e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15310275	2R_15310275_SNP [dm3] 2R_19422770_SNP [dm6]	C	A	1.216e^-4	0.821	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	19753611	2R_19753611_SNP [dm3] 2R_23866088_SNP [dm6]	C	T	1.218e^-4	0.821	UPSTREAM CG4585 DOWNSTREAM Thiolase INTRON CG5569
2R	19753539	2R_19753539_DEL [dm3] 2R_23866016_DEL [dm6]	TGAATGC	T	1.219e^-4	0.821	UPSTREAM CG4585 DOWNSTREAM Thiolase INTRON CG5569
2L	11707094	2L_11707094_SNP [dm3] 2L_11707094_SNP [dm6]	T	A	1.224e^-4	0.821	INTERGENIC
2R	19074897	2R_19074897_SNP [dm3] 2R_23187374_SNP [dm6]	G	C	1.224e^-4	0.821	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3934783	2L_3934783_SNP [dm3] 2L_3934783_SNP [dm6]	A	T	1.225e^-4	0.821	INTRON fred
3L	16263140	3L_16263140_SNP [dm3] 3L_16270040_SNP [dm6]	T	A	1.227e^-4	0.821	DOWNSTREAM CG34248 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	12737898	3L_12737898_SNP [dm3] 3L_12744798_SNP [dm6]	T	C	1.228e^-4	0.821	UPSTREAM CG32109 INTRON CG32112
2R	4966440	2R_4966440_INS [dm3] 2R_9078935_INS [dm6]	A	AA	1.231e^-4	0.821	UTR_5_PRIME CG8083 INTRON CG8083
3R	25915625	3R_25915625_SNP [dm3] 3R_30089903_SNP [dm6]	A	G	1.234e^-4	0.821	INTRON sima	TF binding site mE1_TFBS_Trl
2R	17177217	2R_17177217_SNP [dm3] 2R_21289712_SNP [dm6]	G	A	1.240e^-4	0.822	SYNONYMOUS_CODING CG10505
2L	13584689	2L_13584689_SNP [dm3] 2L_13584689_SNP [dm6]	G	T	1.261e^-4	0.83	INTRON kuz
3R	16761488	3R_16761488_SNP [dm3] 3R_20935766_SNP [dm6]	T	A	1.265e^-4	0.83	INTRON CG31191
2L	11930905	2L_11930905_SNP [dm3] 2L_11930905_SNP [dm6]	G	A	1.265e^-4	0.83	INTERGENIC
3R	20934159	3R_20934159_SNP [dm3] 3R_25108437_SNP [dm6]	G	A	1.279e^-4	0.833	NON_SYNONYMOUS_CODING CG34027 DOWNSTREAM CG13650
2R	19074902	2R_19074902_SNP [dm3] 2R_23187379_SNP [dm6]	C	T	1.279e^-4	0.833	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9397004	3L_9397004_SNP [dm3] 3L_9403904_SNP [dm6]	T	C	1.294e^-4	0.84	UPSTREAM Cpr67B INTERGENIC
2R	19742977	2R_19742977_SNP [dm3] 2R_23855454_SNP [dm6]	C	T	1.307e^-4	0.845	SYNONYMOUS_CODING bgcn DOWNSTREAM wibg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18451763	2R_18451763_SNP [dm3] 2R_22564258_SNP [dm6]	G	A	1.324e^-4	0.847	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13673912	X_13673912_INS [dm3] X_13779879_INS [dm6]	G	GAG	1.329e^-4	0.847	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8041903	3L_8041903_DEL [dm3] 3L_8048803_DEL [dm6]	CATTATA	T	1.334e^-4	0.847	INTRON nmo
3L	4647814	3L_4647814_SNP [dm3] 3L_4647814_SNP [dm6]	C	T	1.334e^-4	0.847	UPSTREAM CG32238 INTRON axo
3L	14223564	3L_14223564_SNP [dm3] 3L_14230464_SNP [dm6]	T	G	1.336e^-4	0.847	INTRON nuf
2R	17188232	2R_17188232_INS [dm3] 2R_21300727_INS [dm6]	T	TTT	1.340e^-4	0.847	INTRON CG42672
X	4068949	X_4068949_SNP [dm3] X_4174916_SNP [dm6]	A	T	1.341e^-4	0.847	INTRON Fas2
2L	18687640	2L_18687640_SNP [dm3] 2L_18687640_SNP [dm6]	G	T	1.353e^-4	0.847	SYNONYMOUS_CODING msl-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8205663	X_8205663_SNP [dm3] X_8311630_SNP [dm6]	T	C	1.360e^-4	0.847	INTRON nAChRalpha3
3L	20094294	3L_20094294_SNP [dm3] 3L_20101194_SNP [dm6]	G	A	1.362e^-4	0.847	INTRON CG14186	TF binding site mE1_TFBS_cad
3L	12160826	3L_12160826_SNP [dm3] 3L_12167726_SNP [dm6]	T	G	1.367e^-4	0.847	INTRON Rh7
2L	15506105	2L_15506105_SNP [dm3] 2L_15506105_SNP [dm6]	C	T	1.369e^-4	0.847	INTERGENIC
2L	13584657	2L_13584657_SNP [dm3] 2L_13584657_SNP [dm6]	C	A	1.373e^-4	0.847	INTRON kuz
2L	13583839	2L_13583839_SNP [dm3] 2L_13583839_SNP [dm6]	G	T	1.378e^-4	0.847	DOWNSTREAM CR44973 INTRON kuz
2L	11938397	2L_11938397_SNP [dm3] 2L_11938397_SNP [dm6]	C	A	1.381e^-4	0.847	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
2R	10154093	2R_10154093_SNP [dm3] 2R_14266588_SNP [dm6]	G	C	1.389e^-4	0.847	INTRON CG8547
2R	10367830	2R_10367830_SNP [dm3] 2R_14480325_SNP [dm6]	C	T	1.391e^-4	0.847	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2R	11784437	2R_11784437_SNP [dm3] 2R_15896932_SNP [dm6]	C	A	1.392e^-4	0.847	UPSTREAM CG33463 INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18105636	2R_18105636_SNP [dm3] 2R_22218131_SNP [dm6]	G	A	1.396e^-4	0.847	SYNONYMOUS_CODING CG30278 DOWNSTREAM ari-2 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo
3R	13721699	3R_13721699_SNP [dm3] 3R_17895977_SNP [dm6]	A	G	1.409e^-4	0.847	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12163578	X_12163578_SNP [dm3] X_12269545_SNP [dm6]	A	T	1.413e^-4	0.847	INTRON Ten-a
2L	6548707	2L_6548707_SNP [dm3] 2L_6548707_SNP [dm6]	T	A	1.420e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13586186	2L_13586186_SNP [dm3] 2L_13586186_SNP [dm6]	G	A	1.438e^-4	0.847	INTRON kuz
2R	9792401	2R_9792401_SNP [dm3] 2R_13904896_SNP [dm6]	T	C	1.444e^-4	0.847	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16276965	3L_16276965_SNP [dm3] 3L_16283865_SNP [dm6]	G	C	1.447e^-4	0.847	UTR_5_PRIME CG13048 UPSTREAM CG13048 DOWNSTREAM CG13047
X	9462671	X_9462671_SNP [dm3] X_9568638_SNP [dm6]	C	A	1.451e^-4	0.847	SPLICE_SITE_REGION Cubn SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19770057	3R_19770057_SNP [dm3] 3R_23944335_SNP [dm6]	G	A	1.451e^-4	0.847	SYNONYMOUS_CODING CG12268	TF binding site mE1_TFBS_cad
3R	19001183	3R_19001183_SNP [dm3] 3R_23175461_SNP [dm6]	C	G	1.451e^-4	0.847	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7635076	2L_7635076_SNP [dm3] 2L_7635076_SNP [dm6]	C	A	1.465e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19749405	2R_19749405_SNP [dm3] 2R_23861882_SNP [dm6]	C	A	1.466e^-4	0.847	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7434802	3L_7434802_SNP [dm3] 3L_7441702_SNP [dm6]	A	T	1.471e^-4	0.847	UPSTREAM sphinx2 INTRON CG42458
X	4656414	X_4656414_SNP [dm3] X_4762381_SNP [dm6]	C	T	1.471e^-4	0.847	INTERGENIC
2R	19791437	2R_19791437_SNP [dm3] 2R_23903914_SNP [dm6]	A	G	1.477e^-4	0.847	NON_SYNONYMOUS_CODING CG13562 UTR_5_PRIME CG13562 DOWNSTREAM Lpt
3R	7000980	3R_7000980_SNP [dm3] 3R_11175258_SNP [dm6]	G	T	1.481e^-4	0.847	SYNONYMOUS_CODING Ugt86Dj UPSTREAM Ugt86Dh
3L	5248467	3L_5248467_SNP [dm3] 3L_5255367_SNP [dm6]	G	T	1.483e^-4	0.847	INTRON shep
3L	9800230	3L_9800230_SNP [dm3] 3L_9807130_SNP [dm6]	C	T	1.488e^-4	0.847	INTRON CG32052	TF binding site mE1_TFBS_inv
2L	12405321	2L_12405321_SNP [dm3] 2L_12405321_SNP [dm6]	T	G	1.492e^-4	0.847	UPSTREAM vir-1 INTRON vir-1
3R	25916550	3R_25916550_SNP [dm3] 3R_30090828_SNP [dm6]	T	C	1.495e^-4	0.847	INTRON sima	TF binding site mE1_TFBS_Trl
3R	12224092	3R_12224092_SNP [dm3] 3R_16398370_SNP [dm6]	C	T	1.496e^-4	0.847	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14160952	2R_14160952_SNP [dm3] 2R_18273447_SNP [dm6]	T	A	1.497e^-4	0.847	INTERGENIC
3L	14223548	3L_14223548_SNP [dm3] 3L_14230448_SNP [dm6]	C	A	1.500e^-4	0.847	INTRON nuf
2L	13586119	2L_13586119_SNP [dm3] 2L_13586119_SNP [dm6]	T	A	1.503e^-4	0.847	INTRON kuz
2L	3705854	2L_3705854_SNP [dm3] 2L_3705854_SNP [dm6]	T	C	1.504e^-4	0.847	UPSTREAM CG31778 DOWNSTREAM CG31777 INTERGENIC
3R	9922268	3R_9922268_SNP [dm3] 3R_14096546_SNP [dm6]	C	A	1.526e^-4	0.853	DOWNSTREAM CG9920 INTRON CCHa1
X	8370160	X_8370160_SNP [dm3] X_8476127_SNP [dm6]	A	G	1.527e^-4	0.853	UPSTREAM Cp7Fc DOWNSTREAM Cp7Fb INTRON CG33223
2L	17500370	2L_17500370_DEL [dm3] 2L_17500370_DEL [dm6]	ATA	A	1.534e^-4	0.853	INTRON CG6412	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14968292	3R_14968292_SNP [dm3] 3R_19142570_SNP [dm6]	A	C	1.541e^-4	0.853	INTRON Ppcs
3R	13672264	3R_13672264_SNP [dm3] 3R_17846542_SNP [dm6]	T	A	1.553e^-4	0.853	INTRON tinc
2L	18672314	2L_18672314_SNP [dm3] 2L_18672314_SNP [dm6]	A	C	1.555e^-4	0.853	INTRON CG43339
2L	13747724	2L_13747724_INS [dm3] 2L_13747724_INS [dm6]	T	TA	1.567e^-4	0.853	UPSTREAM mir-1002 DOWNSTREAM mir-968 INTRON CR44846 & 1 other
X	16264245	X_16264245_SNP [dm3] X_16370212_SNP [dm6]	C	T	1.571e^-4	0.853	UTR_3_PRIME nonA INTRON nonA
2R	15310274	2R_15310274_SNP [dm3] 2R_19422769_SNP [dm6]	A	C	1.572e^-4	0.853	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	11917993	3R_11917993_SNP [dm3] 3R_16092271_SNP [dm6]	G	C	1.575e^-4	0.853	INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9264803	3R_9264803_SNP [dm3] 3R_13439081_SNP [dm6]	C	T	1.577e^-4	0.853	EXON CR42756
2L	11845655	2L_11845655_SNP [dm3] 2L_11845655_SNP [dm6]	A	G	1.594e^-4	0.853	INTRON Pde1c
X	13673893	X_13673893_SNP [dm3] X_13779860_SNP [dm6]	C	T	1.594e^-4	0.853	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
X	13673906	X_13673906_MNP [dm3] X_13779873_MNP [dm6]	TTT	ACA	1.594e^-4	0.853	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26468855	3R_26468855_SNP [dm3] 3R_30643133_SNP [dm6]	G	C	1.595e^-4	0.853	DOWNSTREAM CG31013 INTERGENIC
3L	6635198	3L_6635198_SNP [dm3] 3L_6642098_SNP [dm6]	G	A	1.601e^-4	0.853	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
3L	14223555	3L_14223555_SNP [dm3] 3L_14230455_SNP [dm6]	T	G	1.602e^-4	0.853	INTRON nuf
3R	8919552	3R_8919552_SNP [dm3] 3R_13093830_SNP [dm6]	G	A	1.604e^-4	0.853	INTRON timeout
3R	18581416	3R_18581416_INS [dm3] 3R_22755694_INS [dm6]	C	CTGGC	1.607e^-4	0.853	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11367452	2R_11367452_SNP [dm3] 2R_15479947_SNP [dm6]	C	G	1.607e^-4	0.853	INTRON CG8180	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19523647	2R_19523647_SNP [dm3] 2R_23636124_SNP [dm6]	C	T	1.610e^-4	0.853	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12365125	2L_12365125_SNP [dm3] 2L_12365125_SNP [dm6]	C	T	1.625e^-4	0.855	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3L	5248476	3L_5248476_SNP [dm3] 3L_5255376_SNP [dm6]	A	G	1.635e^-4	0.855	INTRON shep
3L	14223641	3L_14223641_SNP [dm3] 3L_14230541_SNP [dm6]	C	T	1.640e^-4	0.855	INTRON nuf	TF binding site mE1_TFBS_cad
3L	3636375	3L_3636375_SNP [dm3] 3L_3636375_SNP [dm6]	C	A	1.641e^-4	0.855	INTRON dar1
2R	9964241	2R_9964241_INS [dm3] 2R_14076736_INS [dm6]	G	GG	1.642e^-4	0.855	INTRON Prosap
3L	12080612	3L_12080612_SNP [dm3] 3L_12087512_SNP [dm6]	G	A	1.644e^-4	0.855	INTERGENIC
2R	18105167	2R_18105167_SNP [dm3] 2R_22217662_SNP [dm6]	T	C	1.655e^-4	0.855	SYNONYMOUS_CODING CG30278 DOWNSTREAM ari-2 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1503310	3L_1503310_SNP [dm3] 3L_1503310_SNP [dm6]	C	G	1.658e^-4	0.855	UTR_3_PRIME cue UPSTREAM pUf68 INTRON Psa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19752116	2R_19752116_INS [dm3] 2R_23864593_INS [dm6]	A	AA	1.659e^-4	0.855	UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	10269250	3R_10269250_SNP [dm3] 3R_14443528_SNP [dm6]	G	A	1.668e^-4	0.855	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22691297	2L_22691297_SNP [dm3] 2L_22798565_SNP [dm6]	A	G	1.671e^-4	0.855	UPSTREAM CG40439 INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	14875574	3L_14875574_SNP [dm3] 3L_14882474_SNP [dm6]	A	C	1.673e^-4	0.855	DOWNSTREAM CG17839 INTERGENIC
3R	14133450	3R_14133450_SNP [dm3] 3R_18307728_SNP [dm6]	A	G	1.675e^-4	0.855	INTRON PKD	TF binding site mE1_TFBS_HSA
2L	13587143	2L_13587143_SNP [dm3] 2L_13587143_SNP [dm6]	T	A	1.679e^-4	0.855	INTRON kuz
2R	10105721	2R_10105721_INS [dm3] 2R_14218216_INS [dm6]	G	GCCG	1.682e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	12183023	3R_12183023_SNP [dm3] 3R_16357301_SNP [dm6]	G	C	1.694e^-4	0.858	UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other INTERGENIC
2R	17746610	2R_17746610_SNP [dm3] 2R_21859105_SNP [dm6]	C	T	1.706e^-4	0.858	INTERGENIC
3L	16277173	3L_16277173_INS [dm3] 3L_16284073_INS [dm6]	C	CACC	1.713e^-4	0.858	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
X	20507010	X_20507010_SNP [dm3] X_20635983_SNP [dm6]	C	A	1.714e^-4	0.858	INTERGENIC
2R	19749380	2R_19749380_DEL [dm3] 2R_23861857_DEL [dm6]	AGTTA	A	1.714e^-4	0.858	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10113202	3L_10113202_DEL [dm3] 3L_10120102_DEL [dm6]	TTTTT	GA	1.717e^-4	0.858	INTRON dpr6
2R	10365664	2R_10365664_SNP [dm3] 2R_14478159_SNP [dm6]	A	C	1.721e^-4	0.858	DOWNSTREAM CR44462 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7834522	3L_7834522_SNP [dm3] 3L_7841422_SNP [dm6]	G	A	1.729e^-4	0.86	INTRON Pdp1	regulatory region REDfly_CRMs
X	8205646	X_8205646_DEL [dm3] X_8311613_DEL [dm6]	CTTCAGTTTTCC...	C	1.738e^-4	0.861	INTRON nAChRalpha3
X	21874439	X_21874439_SNP [dm3] X_22472603_SNP [dm6]	T	A	1.740e^-4	0.861	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16953891	2R_16953891_SNP [dm3] 2R_21066386_SNP [dm6]	G	T	1.745e^-4	0.861	INTRON Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13695111	2L_13695111_SNP [dm3] 2L_13695111_SNP [dm6]	G	A	1.770e^-4	0.863	INTRON CG31814
2L	3934717	2L_3934717_SNP [dm3] 2L_3934717_SNP [dm6]	A	C	1.772e^-4	0.863	INTRON fred
2L	12403764	2L_12403764_SNP [dm3] 2L_12403764_SNP [dm6]	G	A	1.778e^-4	0.863	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA
2R	14358023	2R_14358023_SNP [dm3] 2R_18470518_SNP [dm6]	C	T	1.778e^-4	0.863	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6476445	X_6476445_SNP [dm3] X_6582412_SNP [dm6]	A	G	1.789e^-4	0.863	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	5912605	X_5912605_SNP [dm3] X_6018572_SNP [dm6]	T	A	1.789e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_sens
2R	6290674	2R_6290674_SNP [dm3] 2R_10403169_SNP [dm6]	C	A	1.792e^-4	0.863	INTRON CG42732
3L	3538503	3L_3538503_SNP [dm3] 3L_3538503_SNP [dm6]	G	T	1.793e^-4	0.863	INTRON Eip63E
2L	12746563	2L_12746563_SNP [dm3] 2L_12746563_SNP [dm6]	T	G	1.794e^-4	0.863	INTERGENIC
2R	18272139	2R_18272139_DEL [dm3] 2R_22384634_DEL [dm6]	GCAT	G	1.801e^-4	0.863	INTRON CG13506	TF binding site mE1_TFBS_Trl
2R	19744885	2R_19744885_SNP [dm3] 2R_23857362_SNP [dm6]	T	G	1.806e^-4	0.863	SYNONYMOUS_CODING bgcn UPSTREAM wibg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7576222	X_7576222_INS [dm3] X_7682189_INS [dm6]	A	AA	1.807e^-4	0.863	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	9528961	3R_9528961_SNP [dm3] 3R_13703239_SNP [dm6]	G	A	1.809e^-4	0.863	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
X	6560123	X_6560123_SNP [dm3] X_6666090_SNP [dm6]	C	T	1.816e^-4	0.864	INTRON Ctr1A
3L	21862624	3L_21862624_SNP [dm3] 3L_21869524_SNP [dm6]	A	T	1.819e^-4	0.864	INTRON mub
3L	2267431	3L_2267431_SNP [dm3] 3L_2267431_SNP [dm6]	A	C	1.832e^-4	0.868	SYNONYMOUS_CODING CG13806 UPSTREAM obst-I	TF binding site mE1_TFBS_cad
2R	19825983	2R_19825983_SNP [dm3] 2R_23938460_SNP [dm6]	G	A	1.842e^-4	0.87	SYNONYMOUS_CODING CG3735	TF binding site mE1_TFBS_sens
3L	7595673	3L_7595673_SNP [dm3] 3L_7602573_SNP [dm6]	T	C	1.860e^-4	0.872	INTRON CG33275
2L	13427829	2L_13427829_SNP [dm3] 2L_13427829_SNP [dm6]	G	A	1.863e^-4	0.872	INTRON CG42784
2L	11247107	2L_11247107_SNP [dm3] 2L_11247107_SNP [dm6]	T	G	1.869e^-4	0.872	INTRON ab
3L	2267760	3L_2267760_INS [dm3] 3L_2267760_INS [dm6]	T	TT	1.877e^-4	0.872	UPSTREAM obst-I DOWNSTREAM CG13806 INTERGENIC
3L	8642393	3L_8642393_SNP [dm3] 3L_8649293_SNP [dm6]	T	C	1.880e^-4	0.872	UPSTREAM Pex7 & 1 other INTRON Pex7
2L	22693558	2L_22693558_SNP [dm3] 2L_22800826_SNP [dm6]	G	T	1.902e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14757329	3R_14757329_SNP [dm3] 3R_18931607_SNP [dm6]	C	T	1.908e^-4	0.872	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11636574	2R_11636574_SNP [dm3] 2R_15749069_SNP [dm6]	G	T	1.909e^-4	0.872	INTRON CG30089	TF binding site BDTNP1_TFBS_twi
2L	12403532	2L_12403532_SNP [dm3] 2L_12403532_SNP [dm6]	G	A	1.909e^-4	0.872	UTR_3_PRIME vir-1
2L	3394773	2L_3394773_SNP [dm3] 2L_3394773_SNP [dm6]	T	A	1.914e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19074780	2R_19074780_SNP [dm3] 2R_23187257_SNP [dm6]	G	T	1.918e^-4	0.872	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	12568148	3L_12568148_DEL [dm3] 3L_12575048_DEL [dm6]	AA	A	1.920e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11574761	3L_11574761_SNP [dm3] 3L_11581661_SNP [dm6]	G	A	1.922e^-4	0.872	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2R	19794455	2R_19794455_SNP [dm3] 2R_23906932_SNP [dm6]	C	T	1.925e^-4	0.872	UTR_5_PRIME Nap1 UPSTREAM kcc INTRON Nap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13721728	3R_13721728_INS [dm3] 3R_17896006_INS [dm6]	A	AA	1.931e^-4	0.872	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7135470	3R_7135470_SNP [dm3] 3R_11309748_SNP [dm6]	T	A	1.936e^-4	0.872	UPSTREAM CR45055 INTERGENIC
3R	19625251	3R_19625251_SNP [dm3] 3R_23799529_SNP [dm6]	G	T	1.946e^-4	0.872	INTRON mbc
X	13673866	X_13673866_SNP [dm3] X_13779833_SNP [dm6]	T	A	1.950e^-4	0.872	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14165384	2R_14165384_INS [dm3] 2R_18277879_INS [dm6]	C	CT	1.951e^-4	0.872	UPSTREAM Ote DOWNSTREAM sbb INTRON pen-2	TF binding site mE1_TFBS_HSA
2R	10194213	2R_10194213_SNP [dm3] 2R_14306708_SNP [dm6]	C	G	1.952e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	6569975	3R_6569975_SNP [dm3] 3R_10744253_SNP [dm6]	C	T	1.955e^-4	0.872	INTRON TkR86C
3L	485546	3L_485546_SNP [dm3] 3L_485546_SNP [dm6]	A	G	1.957e^-4	0.872	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10622072	2L_10622072_SNP [dm3] 2L_10622072_SNP [dm6]	C	A	1.958e^-4	0.872	INTRON Trim9
2L	12368223	2L_12368223_SNP [dm3] 2L_12368223_SNP [dm6]	T	A	1.962e^-4	0.872	INTRON bru-2
X	2985801	X_2985801_INS [dm3] X_3091768_INS [dm6]	A	ATAAAAA	1.975e^-4	0.872	INTRON kirre	regulatory region REDfly_CRMs
2R	16953887	2R_16953887_SNP [dm3] 2R_21066382_SNP [dm6]	T	C	1.981e^-4	0.872	INTRON Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3577505	3L_3577505_SNP [dm3] 3L_3577505_SNP [dm6]	T	A	1.983e^-4	0.872	INTRON Eip63E
3L	6635180	3L_6635180_SNP [dm3] 3L_6642080_SNP [dm6]	T	C	1.993e^-4	0.872	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
2R	16515094	2R_16515094_SNP [dm3] 2R_20627589_SNP [dm6]	A	G	1.995e^-4	0.872	SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2R	19745368	2R_19745368_SNP [dm3] 2R_23857845_SNP [dm6]	T	G	1.997e^-4	0.872	SYNONYMOUS_CODING bgcn UPSTREAM wibg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	4647892	2R_4647892_SNP [dm3] 2R_8760387_SNP [dm6]	T	C	1.997e^-4	0.872	DOWNSTREAM CG8740 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16512518	2R_16512518_SNP [dm3] 2R_20625013_SNP [dm6]	A	C	2.004e^-4	0.872	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	13152484	2L_13152484_SNP [dm3] 2L_13152484_SNP [dm6]	T	C	2.005e^-4	0.872	INTERGENIC
2R	14358047	2R_14358047_SNP [dm3] 2R_18470542_SNP [dm6]	G	A	2.017e^-4	0.872	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11695148	3R_11695148_SNP [dm3] 3R_15869426_SNP [dm6]	C	T	2.021e^-4	0.872	SYNONYMOUS_CODING CG31183	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	18671937	2L_18671937_SNP [dm3] 2L_18671937_SNP [dm6]	G	A	2.027e^-4	0.872	SYNONYMOUS_CODING CG43339 UPSTREAM CG43338
X	14566093	X_14566093_SNP [dm3] X_14672060_SNP [dm6]	A	T	2.029e^-4	0.872	INTERGENIC
X	14566076	X_14566076_SNP [dm3] X_14672043_SNP [dm6]	T	G	2.030e^-4	0.872	INTERGENIC
3R	18973547	3R_18973547_SNP [dm3] 3R_23147825_SNP [dm6]	T	C	2.037e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
3L	7834406	3L_7834406_SNP [dm3] 3L_7841306_SNP [dm6]	T	C	2.038e^-4	0.872	INTRON Pdp1	regulatory region REDfly_CRMs
3L	14224389	3L_14224389_SNP [dm3] 3L_14231289_SNP [dm6]	T	C	2.040e^-4	0.872	SYNONYMOUS_CODING nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13672245	3R_13672245_SNP [dm3] 3R_17846523_SNP [dm6]	A	C	2.053e^-4	0.872	INTRON tinc
2L	14122227	2L_14122227_DEL [dm3] 2L_14122227_DEL [dm6]	TGGTA	T	2.068e^-4	0.872	INTERGENIC
3L	16263224	3L_16263224_SNP [dm3] 3L_16270124_SNP [dm6]	C	T	2.072e^-4	0.872	DOWNSTREAM CG34248 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	12365135	2L_12365135_SNP [dm3] 2L_12365135_SNP [dm6]	A	G	2.081e^-4	0.872	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3R	12616984	3R_12616984_SNP [dm3] 3R_16791262_SNP [dm6]	C	T	2.082e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21415084	3R_21415084_SNP [dm3] 3R_25589362_SNP [dm6]	A	G	2.092e^-4	0.872	UPSTREAM mir-1000 INTRON msi	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	19644670	2R_19644670_SNP [dm3] 2R_23757147_SNP [dm6]	C	T	2.110e^-4	0.872	NON_SYNONYMOUS_CODING CG9850 INTRON CG9850
3L	16263144	3L_16263144_SNP [dm3] 3L_16270044_SNP [dm6]	G	T	2.113e^-4	0.872	DOWNSTREAM CG34248 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	19749388	2R_19749388_SNP [dm3] 2R_23861865_SNP [dm6]	A	T	2.115e^-4	0.872	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	14566088	X_14566088_SNP [dm3] X_14672055_SNP [dm6]	T	A	2.118e^-4	0.872	INTERGENIC
2L	17185416	2L_17185416_SNP [dm3] 2L_17185416_SNP [dm6]	C	G	2.122e^-4	0.872	INTERGENIC
3L	7144202	3L_7144202_SNP [dm3] 3L_7151102_SNP [dm6]	A	C	2.126e^-4	0.872	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12593035	X_12593035_SNP [dm3] X_12699002_SNP [dm6]	G	A	2.127e^-4	0.872	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6919679	2L_6919679_SNP [dm3] 2L_6919679_SNP [dm6]	A	G	2.128e^-4	0.872	SYNONYMOUS_CODING x16 UPSTREAM nop5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14223541	3L_14223541_SNP [dm3] 3L_14230441_SNP [dm6]	A	T	2.133e^-4	0.872	INTRON nuf
3L	14223550	3L_14223550_INS [dm3] 3L_14230450_INS [dm6]	A	AA	2.133e^-4	0.872	INTRON nuf
3L	14223557	3L_14223557_SNP [dm3] 3L_14230457_SNP [dm6]	A	G	2.133e^-4	0.872	INTRON nuf
3L	14223558	3L_14223558_SNP [dm3] 3L_14230458_SNP [dm6]	T	A	2.133e^-4	0.872	INTRON nuf
3R	17740665	3R_17740665_SNP [dm3] 3R_21914943_SNP [dm6]	T	A	2.143e^-4	0.872	SYNONYMOUS_CODING CG17843
3R	13721721	3R_13721721_DEL [dm3] 3R_17895999_DEL [dm6]	TT	T	2.143e^-4	0.872	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16263250	3L_16263250_SNP [dm3] 3L_16270150_SNP [dm6]	C	T	2.146e^-4	0.872	DOWNSTREAM CG34248 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	22500392	3R_22500392_SNP [dm3] 3R_26674670_SNP [dm6]	T	C	2.148e^-4	0.872	INTRON beat-VII
3L	10748900	3L_10748900_DEL [dm3] 3L_10755800_DEL [dm6]	CA	C	2.148e^-4	0.872	INTERGENIC
2L	21827408	2L_21827408_SNP [dm3] 2L_21827408_SNP [dm6]	T	A	2.152e^-4	0.872	INTERGENIC	transposable element FlyBase
2R	18017855	2R_18017855_SNP [dm3] 2R_22130350_SNP [dm6]	C	T	2.162e^-4	0.872	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	8468947	3L_8468947_SNP [dm3] 3L_8475847_SNP [dm6]	T	C	2.164e^-4	0.872	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	7696200	X_7696200_SNP [dm3] X_7802167_SNP [dm6]	G	A	2.182e^-4	0.872	INTERGENIC
3L	7144241	3L_7144241_SNP [dm3] 3L_7151141_SNP [dm6]	T	C	2.184e^-4	0.872	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7834182	3L_7834182_SNP [dm3] 3L_7841082_SNP [dm6]	G	A	2.186e^-4	0.872	INTRON Pdp1	regulatory region REDfly_CRMs
2L	3720720	2L_3720720_SNP [dm3] 2L_3720720_SNP [dm6]	C	T	2.196e^-4	0.872	UPSTREAM Shaw INTRON Shaw
2L	6812346	2L_6812346_DEL [dm3] 2L_6812346_DEL [dm6]	CCTCGAT	C	2.196e^-4	0.872	UPSTREAM CR44081 INTERGENIC
2R	9343227	2R_9343227_SNP [dm3] 2R_13455722_SNP [dm6]	A	G	2.203e^-4	0.872	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_sens
2R	9343236	2R_9343236_SNP [dm3] 2R_13455731_SNP [dm6]	G	C	2.203e^-4	0.872	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_sens
2R	17188284	2R_17188284_SNP [dm3] 2R_21300779_SNP [dm6]	T	G	2.203e^-4	0.872	INTRON CG42672
3L	16995078	3L_16995078_SNP [dm3] 3L_17001978_SNP [dm6]	C	G	2.204e^-4	0.872	INTRON CG3764
X	14566081	X_14566081_SNP [dm3] X_14672048_SNP [dm6]	G	A	2.208e^-4	0.872	INTERGENIC
2L	6548774	2L_6548774_SNP [dm3] 2L_6548774_SNP [dm6]	G	A	2.209e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14359969	2R_14359969_SNP [dm3] 2R_18472464_SNP [dm6]	G	T	2.217e^-4	0.874	INTRON CG30116
2R	10196326	2R_10196326_SNP [dm3] 2R_14308821_SNP [dm6]	C	G	2.226e^-4	0.875	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	5100524	3L_5100524_SNP [dm3] 3L_5100524_SNP [dm6]	T	G	2.229e^-4	0.875	UPSTREAM CR34047 INTERGENIC
2R	18980455	2R_18980455_SNP [dm3] 2R_23092932_SNP [dm6]	T	A	2.234e^-4	0.875	INTRON CG9876	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	1934376	2L_1934376_SNP [dm3] 2L_1934376_SNP [dm6]	G	T	2.239e^-4	0.875	INTRON CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14223532	3L_14223532_INS [dm3] 3L_14230432_INS [dm6]	A	AGACTAAAGTGGT...	2.248e^-4	0.875	INTRON nuf
2L	6510783	2L_6510783_SNP [dm3] 2L_6510783_SNP [dm6]	G	T	2.268e^-4	0.875	INTRON CG31637
3R	25485365	3R_25485365_SNP [dm3] 3R_29659643_SNP [dm6]	A	G	2.269e^-4	0.875	INTRON Dop1R2
3L	14223552	3L_14223552_SNP [dm3] 3L_14230452_SNP [dm6]	A	G	2.271e^-4	0.875	INTRON nuf
2R	19619801	2R_19619801_SNP [dm3] 2R_23732278_SNP [dm6]	C	G	2.278e^-4	0.875	INTRON Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	6615396	3L_6615396_SNP [dm3] 3L_6622296_SNP [dm6]	T	A	2.281e^-4	0.875	INTERGENIC
X	9462643	X_9462643_SNP [dm3] X_9568610_SNP [dm6]	T	A	2.281e^-4	0.875	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20119686	3L_20119686_SNP [dm3] 3L_20126586_SNP [dm6]	T	A	2.283e^-4	0.875	UPSTREAM CG7365 INTRON CG7365
3L	20096808	3L_20096808_SNP [dm3] 3L_20103708_SNP [dm6]	C	T	2.287e^-4	0.875	UTR_5_PRIME CG14186 UPSTREAM CR44679	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	7947957	2R_7947957_SNP [dm3] 2R_12060452_SNP [dm6]	C	A	2.287e^-4	0.875	INTRON Drep-3
3R	25487868	3R_25487868_SNP [dm3] 3R_29662146_SNP [dm6]	G	A	2.293e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4674163	3R_4674163_INS [dm3] 3R_8848441_INS [dm6]	A	ACACACA	2.297e^-4	0.875	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8891095	2R_8891095_SNP [dm3] 2R_13003590_SNP [dm6]	A	C	2.301e^-4	0.875	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo
2R	19752062	2R_19752062_SNP [dm3] 2R_23864539_SNP [dm6]	C	T	2.309e^-4	0.877	UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	17804148	2R_17804148_SNP [dm3] 2R_21916643_SNP [dm6]	G	T	2.315e^-4	0.877	INTRON Fili
3L	1117662	3L_1117662_SNP [dm3] 3L_1117662_SNP [dm6]	G	C	2.332e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7767412	2L_7767412_SNP [dm3] 2L_7767412_SNP [dm6]	C	A	2.349e^-4	0.881	UPSTREAM CG7191 INTERGENIC
2L	7634652	2L_7634652_SNP [dm3] 2L_7634652_SNP [dm6]	A	T	2.349e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	20862476	3R_20862476_SNP [dm3] 3R_25036754_SNP [dm6]	T	C	2.356e^-4	0.881	UPSTREAM CG31115 INTRON CG6422
2R	16512476	2R_16512476_SNP [dm3] 2R_20624971_SNP [dm6]	G	C	2.359e^-4	0.881	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
3L	12933117	3L_12933117_SNP [dm3] 3L_12940017_SNP [dm6]	A	T	2.362e^-4	0.881	INTERGENIC
2R	16632503	2R_16632503_SNP [dm3] 2R_20744998_SNP [dm6]	C	T	2.368e^-4	0.881	INTRON dpr
X	13171984	X_13171984_SNP [dm3] X_13277951_SNP [dm6]	A	G	2.370e^-4	0.881	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20862278	3R_20862278_INS [dm3] 3R_25036556_INS [dm6]	T	TG	2.373e^-4	0.881	UPSTREAM CG31115 INTRON CG6422
2L	12275341	2L_12275341_SNP [dm3] 2L_12275341_SNP [dm6]	C	T	2.374e^-4	0.881	INTRON aret
3R	19625355	3R_19625355_SNP [dm3] 3R_23799633_SNP [dm6]	C	T	2.381e^-4	0.881	SYNONYMOUS_CODING mbc
3L	6635187	3L_6635187_SNP [dm3] 3L_6642087_SNP [dm6]	G	A	2.386e^-4	0.881	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
3R	22761259	3R_22761259_SNP [dm3] 3R_26935537_SNP [dm6]	G	C	2.387e^-4	0.881	INTRON sda
2R	1241873	2R_1241873_SNP [dm3] 2R_5354368_SNP [dm6]	T	A	2.401e^-4	0.881	NON_SYNONYMOUS_CODING CG10396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	15763051	2L_15763051_INS [dm3] 2L_15763051_INS [dm6]	A	AA	2.405e^-4	0.881	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3115383	2L_3115383_INS [dm3] 2L_3115383_INS [dm6]	A	AA	2.406e^-4	0.881	INTRON toc
3L	17279265	3L_17279265_SNP [dm3] 3L_17286165_SNP [dm6]	A	G	2.408e^-4	0.881	INTERGENIC
3R	1740721	3R_1740721_SNP [dm3] 3R_5914999_SNP [dm6]	T	G	2.410e^-4	0.881	INTRON CG34113
3R	12563867	3R_12563867_SNP [dm3] 3R_16738145_SNP [dm6]	C	G	2.419e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3962630	2L_3962630_SNP [dm3] 2L_3962630_SNP [dm6]	G	T	2.442e^-4	0.886	INTRON fred
2R	11393325	2R_11393325_SNP [dm3] 2R_15505820_SNP [dm6]	C	T	2.446e^-4	0.886	SYNONYMOUS_CODING Ir52c UPSTREAM Ir52d
2L	5600940	2L_5600940_SNP [dm3] 2L_5600940_SNP [dm6]	C	T	2.459e^-4	0.886	DOWNSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	12848917	X_12848917_SNP [dm3] X_12954884_SNP [dm6]	T	C	2.460e^-4	0.886	INTRON hec
3L	18778586	3L_18778586_SNP [dm3] 3L_18785486_SNP [dm6]	G	C	2.466e^-4	0.886	INTRON ftz-f1
2L	3934708	2L_3934708_SNP [dm3] 2L_3934708_SNP [dm6]	C	A	2.468e^-4	0.886	INTRON fred
3L	14224404	3L_14224404_SNP [dm3] 3L_14231304_SNP [dm6]	C	G	2.470e^-4	0.886	SYNONYMOUS_CODING nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17362102	3R_17362102_SNP [dm3] 3R_21536380_SNP [dm6]	C	T	2.471e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14223578	3L_14223578_DEL [dm3] 3L_14230478_DEL [dm6]	CAGTTTGTAGAGTTTGTGA...	T	2.480e^-4	0.886	INTRON nuf
3L	14223481	3L_14223481_INS [dm3] 3L_14230381_INS [dm6]	A	AGA	2.487e^-4	0.886	INTRON nuf
3R	9265401	3R_9265401_SNP [dm3] 3R_13439679_SNP [dm6]	G	C	2.489e^-4	0.886	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12607961	3R_12607961_SNP [dm3] 3R_16782239_SNP [dm6]	A	G	2.495e^-4	0.886	INTERGENIC
2L	20955452	2L_20955452_SNP [dm3] 2L_20955452_SNP [dm6]	A	T	2.507e^-4	0.886	INTERGENIC
X	12593014	X_12593014_SNP [dm3] X_12698981_SNP [dm6]	A	G	2.525e^-4	0.886	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3489081	3L_3489081_SNP [dm3] 3L_3489081_SNP [dm6]	A	T	2.527e^-4	0.886	INTRON CG42324
3R	21415286	3R_21415286_SNP [dm3] 3R_25589564_SNP [dm6]	A	G	2.531e^-4	0.886	UPSTREAM mir-1000 INTRON msi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	19770255	3R_19770255_SNP [dm3] 3R_23944533_SNP [dm6]	G	A	2.535e^-4	0.886	SYNONYMOUS_CODING CG12268	TF binding site mE1_TFBS_cad
X	14566082	X_14566082_SNP [dm3] X_14672049_SNP [dm6]	T	A	2.538e^-4	0.886	INTERGENIC
X	17152897	X_17152897_INS [dm3] X_17258864_INS [dm6]	T	TAT	2.538e^-4	0.886	UPSTREAM f INTRON f
X	19667099	X_19667099_SNP [dm3] X_19773066_SNP [dm6]	T	C	2.544e^-4	0.886	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19744391	2R_19744391_SNP [dm3] 2R_23856868_SNP [dm6]	T	A	2.552e^-4	0.886	SYNONYMOUS_CODING wibg INTRON bgcn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	11673233	X_11673233_SNP [dm3] X_11779200_SNP [dm6]	G	A	2.555e^-4	0.886	UPSTREAM dy INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19753299	2R_19753299_SNP [dm3] 2R_23865776_SNP [dm6]	A	T	2.582e^-4	0.886	UPSTREAM CG4585 DOWNSTREAM Thiolase INTRON CG5569	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18792510	2R_18792510_SNP [dm3] 2R_22904987_SNP [dm6]	G	T	2.582e^-4	0.886	INTRON nahoda
3R	8560530	3R_8560530_SNP [dm3] 3R_12734808_SNP [dm6]	A	G	2.599e^-4	0.886	INTERGENIC
X	12936736	X_12936736_SNP [dm3] X_13042703_SNP [dm6]	A	T	2.600e^-4	0.886	INTRON rad
3R	19800815	3R_19800815_SNP [dm3] 3R_23975093_SNP [dm6]	G	A	2.604e^-4	0.886	NON_SYNONYMOUS_CODING CG31140 INTRON CG31140	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13753899	3R_13753899_SNP [dm3] 3R_17928177_SNP [dm6]	C	T	2.604e^-4	0.886	INTRON cpo
3L	14223643	3L_14223643_SNP [dm3] 3L_14230543_SNP [dm6]	A	T	2.606e^-4	0.886	INTRON nuf	TF binding site mE1_TFBS_cad
3R	6576075	3R_6576075_SNP [dm3] 3R_10750353_SNP [dm6]	C	G	2.614e^-4	0.886	UTR_5_PRIME TkR86C
3L	7834537	3L_7834537_SNP [dm3] 3L_7841437_SNP [dm6]	C	G	2.616e^-4	0.886	INTRON Pdp1	regulatory region REDfly_CRMs
2L	11247226	2L_11247226_SNP [dm3] 2L_11247226_SNP [dm6]	C	T	2.621e^-4	0.886	INTRON ab	TF binding site BDTNP1_TFBS_dl
3L	2286186	3L_2286186_SNP [dm3] 3L_2286186_SNP [dm6]	G	A	2.624e^-4	0.886	INTRON MsR2
2R	19749365	2R_19749365_SNP [dm3] 2R_23861842_SNP [dm6]	C	G	2.624e^-4	0.886	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	19625441	3R_19625441_SNP [dm3] 3R_23799719_SNP [dm6]	C	A	2.626e^-4	0.886	INTRON mbc
2R	6290675	2R_6290675_SNP [dm3] 2R_10403170_SNP [dm6]	C	T	2.628e^-4	0.886	INTRON CG42732
3L	14223635	3L_14223635_SNP [dm3] 3L_14230535_SNP [dm6]	T	A	2.633e^-4	0.886	INTRON nuf	TF binding site mE1_TFBS_cad
2L	6240954	2L_6240954_SNP [dm3] 2L_6240954_SNP [dm6]	T	C	2.634e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	10859194	2R_10859194_DEL [dm3] 2R_14971689_DEL [dm6]	CCATTTTCA	C	2.636e^-4	0.886	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13145394	2R_13145394_SNP [dm3] 2R_17257889_SNP [dm6]	G	A	2.640e^-4	0.886	UPSTREAM CG43108 INTRON mbl
2L	22307250	2L_22307250_SNP [dm3] 2L_22307250_SNP [dm6]	T	G	2.645e^-4	0.886	INTERGENIC
3L	16170849	3L_16170849_SNP [dm3] 3L_16177749_SNP [dm6]	C	T	2.646e^-4	0.886	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22814601	3R_22814601_SNP [dm3] 3R_26988879_SNP [dm6]	A	G	2.653e^-4	0.886	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2L	12275329	2L_12275329_SNP [dm3] 2L_12275329_SNP [dm6]	T	C	2.673e^-4	0.886	INTRON aret
2L	12405439	2L_12405439_SNP [dm3] 2L_12405439_SNP [dm6]	T	C	2.679e^-4	0.886	UPSTREAM vir-1 INTRON vir-1
3R	14588201	3R_14588201_SNP [dm3] 3R_18762479_SNP [dm6]	C	T	2.680e^-4	0.886	INTRON CG7720	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10619943	3L_10619943_SNP [dm3] 3L_10626843_SNP [dm6]	T	A	2.682e^-4	0.886	DOWNSTREAM CG14151 INTRON CG34238
3R	6577208	3R_6577208_SNP [dm3] 3R_10751486_SNP [dm6]	A	G	2.688e^-4	0.886	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3R	17715142	3R_17715142_SNP [dm3] 3R_21889420_SNP [dm6]	T	C	2.688e^-4	0.886	UPSTREAM CR43844 INTRON CG6678	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
2R	16692395	2R_16692395_SNP [dm3] 2R_20804890_SNP [dm6]	G	A	2.704e^-4	0.886	INTERGENIC
3R	12608029	3R_12608029_SNP [dm3] 3R_16782307_SNP [dm6]	C	G	2.706e^-4	0.886	INTERGENIC
2R	6167766	2R_6167766_SNP [dm3] 2R_10280261_SNP [dm6]	T	C	2.711e^-4	0.886	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
X	8397715	X_8397715_SNP [dm3] X_8503682_SNP [dm6]	T	C	2.715e^-4	0.886	INTRON CG33181
X	5007094	X_5007094_SNP [dm3] X_5113061_SNP [dm6]	T	G	2.718e^-4	0.886	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19576012	2R_19576012_SNP [dm3] 2R_23688489_SNP [dm6]	G	C	2.720e^-4	0.886	NON_SYNONYMOUS_CODING Pal2 DOWNSTREAM St3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14395557	2R_14395557_SNP [dm3] 2R_18508052_SNP [dm6]	C	A	2.734e^-4	0.886	INTERGENIC
2R	18276497	2R_18276497_SNP [dm3] 2R_22388992_SNP [dm6]	A	G	2.735e^-4	0.886	INTRON CG13506
3R	16102146	3R_16102146_SNP [dm3] 3R_20276424_SNP [dm6]	G	C	2.739e^-4	0.886	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14223671	3L_14223671_INS [dm3] 3L_14230571_INS [dm6]	T	TAT	2.741e^-4	0.886	INTRON nuf	TF binding site mE1_TFBS_cad
3L	7578626	3L_7578626_SNP [dm3] 3L_7585526_SNP [dm6]	A	G	2.748e^-4	0.886	SYNONYMOUS_CODING CG14838	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18919815	2L_18919815_SNP [dm3] 2L_18919815_SNP [dm6]	C	A	2.750e^-4	0.886	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
X	8747839	X_8747839_SNP [dm3] X_8853806_SNP [dm6]	G	T	2.755e^-4	0.886	UTR_5_PRIME CG12075 INTRON CG12075
3L	20542858	3L_20542858_SNP [dm3] 3L_20549758_SNP [dm6]	A	C	2.755e^-4	0.886	INTERGENIC
2R	14552867	2R_14552867_SNP [dm3] 2R_18665362_SNP [dm6]	G	A	2.774e^-4	0.886	NON_SYNONYMOUS_CODING CG33136	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11289466	2L_11289466_SNP [dm3] 2L_11289466_SNP [dm6]	C	T	2.775e^-4	0.886	INTERGENIC
2R	9803454	2R_9803454_DEL [dm3] 2R_13915949_DEL [dm6]	GCAG	G	2.778e^-4	0.886	INTRON shot
2L	10825106	2L_10825106_SNP [dm3] 2L_10825106_SNP [dm6]	A	G	2.778e^-4	0.886	INTRON Nos
3R	2289563	3R_2289563_SNP [dm3] 3R_6463841_SNP [dm6]	C	T	2.780e^-4	0.886	INTERGENIC
2L	22681710	2L_22681710_SNP [dm3] 2L_22788978_SNP [dm6]	A	T	2.790e^-4	0.886	INTERGENIC
2L	1609084	2L_1609084_SNP [dm3] 2L_1609084_SNP [dm6]	T	C	2.806e^-4	0.886	DOWNSTREAM haf INTRON CG31935
3R	25548902	3R_25548902_SNP [dm3] 3R_29723180_SNP [dm6]	C	A	2.806e^-4	0.886	UTR_5_PRIME Pcd DOWNSTREAM CG15506 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10218866	2R_10218866_INS [dm3] 2R_14331361_INS [dm6]	A	AAAA	2.819e^-4	0.886	INTRON Shroom
3L	10210195	3L_10210195_SNP [dm3] 3L_10217095_SNP [dm6]	A	G	2.824e^-4	0.886	DOWNSTREAM CG8065 INTERGENIC
3R	15466802	3R_15466802_SNP [dm3] 3R_19641080_SNP [dm6]	T	G	2.827e^-4	0.886	UTR_5_PRIME subdued INTRON subdued	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21233011	2L_21233011_SNP [dm3] 2L_21233011_SNP [dm6]	A	G	2.828e^-4	0.886	SYNONYMOUS_CODING CG31626 DOWNSTREAM CG8677 EXON CR45713	TF binding site mE1_TFBS_HSA
3R	12762406	3R_12762406_SNP [dm3] 3R_16936684_SNP [dm6]	A	C	2.834e^-4	0.886	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22373005	2L_22373005_SNP [dm3] 2L_22373005_SNP [dm6]	C	T	2.838e^-4	0.886	INTERGENIC	transposable element FlyBase
3L	8133474	3L_8133474_SNP [dm3] 3L_8140374_SNP [dm6]	A	G	2.843e^-4	0.886	INTRON mus301
3L	16540983	3L_16540983_SNP [dm3] 3L_16547883_SNP [dm6]	A	C	2.852e^-4	0.886	INTERGENIC
2R	9556540	2R_9556540_SNP [dm3] 2R_13669035_SNP [dm6]	A	T	2.872e^-4	0.886	NON_SYNONYMOUS_CODING CG18368 INTRON fas
2R	6290678	2R_6290678_SNP [dm3] 2R_10403173_SNP [dm6]	A	T	2.878e^-4	0.886	INTRON CG42732
2R	19074908	2R_19074908_SNP [dm3] 2R_23187385_SNP [dm6]	T	A	2.885e^-4	0.886	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6091197	2R_6091197_DEL [dm3] 2R_10203692_DEL [dm6]	ATGCCTTAAGCACACATTGT...	GA	2.886e^-4	0.886	DOWNSTREAM Hr46 INTERGENIC
2R	18563301	2R_18563301_SNP [dm3] 2R_22675796_SNP [dm6]	A	C	2.889e^-4	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_chinmo
2R	9596713	2R_9596713_SNP [dm3] 2R_13709208_SNP [dm6]	G	T	2.894e^-4	0.886	INTRON fas
2L	4713154	2L_4713154_SNP [dm3] 2L_4713154_SNP [dm6]	T	C	2.914e^-4	0.886	INTRON CG34351
3L	4870685	3L_4870685_SNP [dm3] 3L_4870685_SNP [dm6]	C	A	2.915e^-4	0.886	SYNONYMOUS_CODING CG17150	TF binding site BDTNP1_TFBS_sna
3L	16758867	3L_16758867_SNP [dm3] 3L_16765767_SNP [dm6]	T	C	2.928e^-4	0.886	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12202220	3L_12202220_SNP [dm3] 3L_12209120_SNP [dm6]	T	A	2.932e^-4	0.886	UTR_3_PRIME app INTRON app
3R	13672247	3R_13672247_SNP [dm3] 3R_17846525_SNP [dm6]	G	T	2.933e^-4	0.886	INTRON tinc
3L	9323023	3L_9323023_SNP [dm3] 3L_9329923_SNP [dm6]	C	G	2.933e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18589251	2R_18589251_SNP [dm3] 2R_22701746_SNP [dm6]	T	C	2.938e^-4	0.886	NON_SYNONYMOUS_CODING CG30259 UPSTREAM robo & 1 other	TF binding site mE1_TFBS_chinmo
2R	9968152	2R_9968152_SNP [dm3] 2R_14080647_SNP [dm6]	A	C	2.938e^-4	0.886	INTRON Prosap
2L	19912418	2L_19912418_SNP [dm3] 2L_19912418_SNP [dm6]	G	A	2.944e^-4	0.886	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3L	16897299	3L_16897299_SNP [dm3] 3L_16904199_SNP [dm6]	C	T	2.947e^-4	0.886	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb
X	3032751	X_3032751_SNP [dm3] X_3138718_SNP [dm6]	G	T	2.958e^-4	0.886	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17188142	2R_17188142_SNP [dm3] 2R_21300637_SNP [dm6]	G	A	2.965e^-4	0.886	INTRON CG42672	TF binding site mE1_TFBS_sens
3L	1604662	3L_1604662_DEL [dm3] 3L_1604662_DEL [dm6]	AGTTGGGCAGCCTCTTCA...	A	2.965e^-4	0.886	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
X	17245911	X_17245911_SNP [dm3] X_17351878_SNP [dm6]	G	A	2.971e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	11331504	2L_11331504_SNP [dm3] 2L_11331504_SNP [dm6]	T	C	2.972e^-4	0.886	DOWNSTREAM CR44584 INTERGENIC
3L	15027759	3L_15027759_SNP [dm3] 3L_15034659_SNP [dm6]	T	C	2.991e^-4	0.886	UPSTREAM Sytbeta INTRON Sytbeta
2L	10175722	2L_10175722_SNP [dm3] 2L_10175722_SNP [dm6]	T	A	2.994e^-4	0.886	INTRON CG44153
3R	25481325	3R_25481325_SNP [dm3] 3R_29655603_SNP [dm6]	C	T	2.994e^-4	0.886	INTRON Dop1R2
3L	10827730	3L_10827730_SNP [dm3] 3L_10834630_SNP [dm6]	G	A	2.997e^-4	0.886	INTERGENIC
X	21874503	X_21874503_SNP [dm3] X_22472667_SNP [dm6]	A	G	3.003e^-4	0.886	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14223518	3L_14223518_SNP [dm3] 3L_14230418_SNP [dm6]	A	G	3.008e^-4	0.886	INTRON nuf
3L	7578572	3L_7578572_SNP [dm3] 3L_7585472_SNP [dm6]	G	A	3.011e^-4	0.886	SYNONYMOUS_CODING CG14838	TF binding site mE1_TFBS_HSA
3R	16897762	3R_16897762_SNP [dm3] 3R_21072040_SNP [dm6]	A	G	3.020e^-4	0.886	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8868861	2L_8868861_DEL [dm3] 2L_8868861_DEL [dm6]	ATATTCATCTAA...	A	3.028e^-4	0.886	DOWNSTREAM CR44414 INTERGENIC
3R	18263729	3R_18263729_SNP [dm3] 3R_22438007_SNP [dm6]	C	T	3.029e^-4	0.886	INTERGENIC
2R	19795473	2R_19795473_SNP [dm3] 2R_23907950_SNP [dm6]	T	G	3.029e^-4	0.886	START_GAINED kcc UTR_5_PRIME kcc UPSTREAM Nap1 & 1 other DOWNSTREAM CR44806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20011165	3R_20011165_SNP [dm3] 3R_24185443_SNP [dm6]	G	A	3.034e^-4	0.886	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10102656	2L_10102656_SNP [dm3] 2L_10102656_SNP [dm6]	C	G	3.034e^-4	0.886	INTRON CG44153 & 1 other
2R	8604989	2R_8604989_SNP [dm3] 2R_12717484_SNP [dm6]	C	T	3.036e^-4	0.886	INTRON CG42663	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20344237	X_20344237_SNP [dm3] X_20473210_SNP [dm6]	T	C	3.036e^-4	0.886	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_chinmo
3L	7144194	3L_7144194_SNP [dm3] 3L_7151094_SNP [dm6]	G	T	3.039e^-4	0.886	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3575990	3L_3575990_SNP [dm3] 3L_3575990_SNP [dm6]	T	A	3.039e^-4	0.886	INTRON Eip63E
2L	16712560	2L_16712560_SNP [dm3] 2L_16712560_SNP [dm6]	A	T	3.041e^-4	0.886	INTRON CG31808
X	14566095	X_14566095_SNP [dm3] X_14672062_SNP [dm6]	C	T	3.044e^-4	0.886	INTERGENIC
X	10019296	X_10019296_SNP [dm3] X_10125263_SNP [dm6]	G	A	3.049e^-4	0.886	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
X	9071449	X_9071449_SNP [dm3] X_9177416_SNP [dm6]	T	C	3.050e^-4	0.886	UTR_3_PRIME mei-P26
2R	4821273	2R_4821273_SNP [dm3] 2R_8933768_SNP [dm6]	G	C	3.066e^-4	0.886	DOWNSTREAM PAN2 & 1 other INTRON CG13749
3L	20105004	3L_20105004_SNP [dm3] 3L_20111904_SNP [dm6]	G	C	3.075e^-4	0.886	UPSTREAM Ir76b DOWNSTREAM CG14187 INTERGENIC
X	17599188	X_17599188_SNP [dm3] X_17705155_SNP [dm6]	C	G	3.078e^-4	0.886	SYNONYMOUS_CODING par-6	TF binding site mE1_TFBS_sens
3L	4362901	3L_4362901_SNP [dm3] 3L_4362901_SNP [dm6]	T	G	3.085e^-4	0.886	INTRON Cip4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	7434151	X_7434151_SNP [dm3] X_7540118_SNP [dm6]	T	A	3.093e^-4	0.886	INTRON CG32719
X	19374720	X_19374720_SNP [dm3] X_19480687_SNP [dm6]	G	A	3.104e^-4	0.886	UPSTREAM mRpS14 INTRON Nat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21095253	3R_21095253_SNP [dm3] 3R_25269531_SNP [dm6]	C	T	3.106e^-4	0.886	UPSTREAM CG11889 & 1 other INTRON CR45214 EXON CR13656	TF binding site mE1_TFBS_HSA
3L	2033044	3L_2033044_SNP [dm3] 3L_2033044_SNP [dm6]	A	T	3.106e^-4	0.886	INTERGENIC
2R	12881417	2R_12881417_SNP [dm3] 2R_16993912_SNP [dm6]	T	A	3.111e^-4	0.886	INTRON Cbp53E
3R	8142678	3R_8142678_SNP [dm3] 3R_12316956_SNP [dm6]	A	G	3.112e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13672223	3R_13672223_INS [dm3] 3R_17846501_INS [dm6]	T	TACTT	3.117e^-4	0.886	INTRON tinc
X	20347612	X_20347612_SNP [dm3] X_20476585_SNP [dm6]	T	A	3.124e^-4	0.886	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad
2R	19925017	2R_19925017_SNP [dm3] 2R_24037494_SNP [dm6]	A	G	3.125e^-4	0.886	SYNONYMOUS_CODING Not11 UPSTREAM IntS1 DOWNSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9852805	2R_9852805_SNP [dm3] 2R_13965300_SNP [dm6]	A	G	3.125e^-4	0.886	UTR_5_PRIME Cp1 UTR_3_PRIME CG42806 INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
X	16752300	X_16752300_SNP [dm3] X_16858267_SNP [dm6]	A	G	3.137e^-4	0.886	INTRON CG13003
3R	13754022	3R_13754022_SNP [dm3] 3R_17928300_SNP [dm6]	A	C	3.143e^-4	0.886	INTRON cpo	TF binding site mE1_TFBS_inv
3L	11574807	3L_11574807_SNP [dm3] 3L_11581707_SNP [dm6]	A	C	3.143e^-4	0.886	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
3L	14223526	3L_14223526_INS [dm3] 3L_14230426_INS [dm6]	A	AA	3.145e^-4	0.886	INTRON nuf
3R	8557467	3R_8557467_SNP [dm3] 3R_12731745_SNP [dm6]	T	A	3.145e^-4	0.886	INTERGENIC
2R	11668744	2R_11668744_SNP [dm3] 2R_15781239_SNP [dm6]	T	A	3.152e^-4	0.886	INTRON Zasp52
X	3474103	X_3474103_SNP [dm3] X_3580070_SNP [dm6]	G	A	3.157e^-4	0.886	INTRON AstA-R1
2R	4894432	2R_4894432_SNP [dm3] 2R_9006927_SNP [dm6]	G	T	3.158e^-4	0.886	UPSTREAM Np DOWNSTREAM CG8172 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	8205634	X_8205634_SNP [dm3] X_8311601_SNP [dm6]	C	A	3.161e^-4	0.886	INTRON nAChRalpha3
3R	14757504	3R_14757504_SNP [dm3] 3R_18931782_SNP [dm6]	C	T	3.162e^-4	0.886	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19034126	3R_19034126_SNP [dm3] 3R_23208404_SNP [dm6]	C	G	3.167e^-4	0.886	INTRON cnc
3L	14510699	3L_14510699_SNP [dm3] 3L_14517599_SNP [dm6]	C	T	3.175e^-4	0.886	UPSTREAM CG9592 INTRON bbg
2R	20731933	2R_20731933_SNP [dm3] 2R_24844410_SNP [dm6]	C	G	3.191e^-4	0.886	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6465020	3L_6465020_SNP [dm3] 3L_6471920_SNP [dm6]	A	C	3.191e^-4	0.886	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2L	11821832	2L_11821832_SNP [dm3] 2L_11821832_SNP [dm6]	G	A	3.210e^-4	0.886	UPSTREAM Pde1c INTRON Pde1c
3L	14223749	3L_14223749_SNP [dm3] 3L_14230649_SNP [dm6]	C	T	3.220e^-4	0.886	SPLICE_SITE_REGION nuf INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	11555786	2L_11555786_SNP [dm3] 2L_11555786_SNP [dm6]	C	A	3.220e^-4	0.886	INTERGENIC
2R	10398312	2R_10398312_SNP [dm3] 2R_14510807_SNP [dm6]	G	C	3.220e^-4	0.886	DOWNSTREAM Asx INTRON Asx
X	5186536	X_5186536_SNP [dm3] X_5292503_SNP [dm6]	T	A	3.226e^-4	0.886	INTERGENIC
2L	20045262	2L_20045262_SNP [dm3] 2L_20045262_SNP [dm6]	A	G	3.233e^-4	0.886	INTRON sNPF	transposable element FlyBase
2L	13584660	2L_13584660_SNP [dm3] 2L_13584660_SNP [dm6]	T	A	3.233e^-4	0.886	INTRON kuz
3R	18125649	3R_18125649_SNP [dm3] 3R_22299927_SNP [dm6]	G	C	3.235e^-4	0.886	INTRON CG7084
3L	12398097	3L_12398097_SNP [dm3] 3L_12404997_SNP [dm6]	T	C	3.242e^-4	0.886	SPLICE_SITE_REGION CG32103 INTRON CG32103	TF binding site mE1_TFBS_cad
X	8563712	X_8563712_SNP [dm3] X_8669679_SNP [dm6]	A	T	3.247e^-4	0.886	INTERGENIC
3R	19433697	3R_19433697_SNP [dm3] 3R_23607975_SNP [dm6]	T	G	3.248e^-4	0.886	INTRON CG31145	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7797784	X_7797784_DEL [dm3] X_7903751_DEL [dm6]	TT	T	3.249e^-4	0.886	UTR_3_PRIME dpr14 DOWNSTREAM bys
3R	9767551	3R_9767551_SNP [dm3] 3R_13941829_SNP [dm6]	C	A	3.255e^-4	0.886	DOWNSTREAM Art9 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	7635071	2L_7635071_SNP [dm3] 2L_7635071_SNP [dm6]	A	C	3.257e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3836140	2L_3836140_SNP [dm3] 2L_3836140_SNP [dm6]	G	T	3.260e^-4	0.886	UPSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	10528339	2L_10528339_SNP [dm3] 2L_10528339_SNP [dm6]	C	A	3.267e^-4	0.886	UPSTREAM Lip4 INTRON Lip4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9526360	3R_9526360_SNP [dm3] 3R_13700638_SNP [dm6]	C	A	3.268e^-4	0.886	UTR_5_PRIME ninaB INTRON f-cup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3L	17149782	3L_17149782_SNP [dm3] 3L_17156682_SNP [dm6]	G	A	3.268e^-4	0.886	INTRON Rbp6
3R	4766194	3R_4766194_INS [dm3] 3R_8940472_INS [dm6]	T	TA	3.278e^-4	0.886	INTRON skap
2L	1721949	2L_1721949_SNP [dm3] 2L_1721949_SNP [dm6]	A	C	3.281e^-4	0.886	INTRON Rim2
2L	11707099	2L_11707099_SNP [dm3] 2L_11707099_SNP [dm6]	C	T	3.285e^-4	0.886	INTERGENIC
2R	14162349	2R_14162349_SNP [dm3] 2R_18274844_SNP [dm6]	A	G	3.285e^-4	0.886	DOWNSTREAM Ote INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17188228	2R_17188228_SNP [dm3] 2R_21300723_SNP [dm6]	G	T	3.289e^-4	0.886	INTRON CG42672
3L	12963178	3L_12963178_SNP [dm3] 3L_12970078_SNP [dm6]	A	G	3.294e^-4	0.886	INTERGENIC
2R	14153450	2R_14153450_SNP [dm3] 2R_18265945_SNP [dm6]	G	C	3.297e^-4	0.886	INTERGENIC
2L	5445969	2L_5445969_SNP [dm3] 2L_5445969_SNP [dm6]	T	A	3.302e^-4	0.886	INTERGENIC
2R	10197991	2R_10197991_SNP [dm3] 2R_14310486_SNP [dm6]	C	T	3.303e^-4	0.886	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	14223743	3L_14223743_DEL [dm3] 3L_14230643_DEL [dm6]	TC	T	3.306e^-4	0.886	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	11938311	2L_11938311_SNP [dm3] 2L_11938311_SNP [dm6]	C	T	3.310e^-4	0.886	NON_SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
2L	17228505	2L_17228505_SNP [dm3] 2L_17228505_SNP [dm6]	A	G	3.312e^-4	0.886	INTRON beat-IIIc
3L	16933613	3L_16933613_SNP [dm3] 3L_16940513_SNP [dm6]	T	A	3.317e^-4	0.886	SYNONYMOUS_CODING Cpr73D	TF binding site mE1_TFBS_chinmo
3R	8557532	3R_8557532_SNP [dm3] 3R_12731810_SNP [dm6]	G	A	3.318e^-4	0.886	INTERGENIC
2R	18562927	2R_18562927_SNP [dm3] 2R_22675422_SNP [dm6]	C	T	3.321e^-4	0.886	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	6073212	3L_6073212_SNP [dm3] 3L_6080112_SNP [dm6]	G	A	3.333e^-4	0.886	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17174569	2R_17174569_SNP [dm3] 2R_21287064_SNP [dm6]	A	G	3.334e^-4	0.886	INTRON CG10505	TF binding site mE1_TFBS_chinmo
2L	11406235	2L_11406235_SNP [dm3] 2L_11406235_SNP [dm6]	G	C	3.335e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs
2R	19790096	2R_19790096_SNP [dm3] 2R_23902573_SNP [dm6]	C	T	3.347e^-4	0.886	INTRON Lpt
2L	3957610	2L_3957610_SNP [dm3] 2L_3957610_SNP [dm6]	G	A	3.347e^-4	0.886	INTRON fred
3L	7085583	3L_7085583_SNP [dm3] 3L_7092483_SNP [dm6]	G	T	3.350e^-4	0.886	UPSTREAM Cpr65Ec INTERGENIC
3L	1674237	3L_1674237_SNP [dm3] 3L_1674237_SNP [dm6]	T	C	3.352e^-4	0.886	UPSTREAM CG7991 INTERGENIC
2R	10217341	2R_10217341_DEL [dm3] 2R_14329836_DEL [dm6]	AG	A	3.358e^-4	0.886	INTRON Shroom	TF binding site mE1_TFBS_chinmo
2R	16850675	2R_16850675_SNP [dm3] 2R_20963170_SNP [dm6]	A	C	3.359e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11782747	3R_11782747_SNP [dm3] 3R_15957025_SNP [dm6]	G	A	3.361e^-4	0.886	UTR_3_PRIME Sap47 INTRON Sap47
2R	10154087	2R_10154087_DEL [dm3] 2R_14266582_DEL [dm6]	AA	A	3.364e^-4	0.886	INTRON CG8547
2L	15097008	2L_15097008_SNP [dm3] 2L_15097008_SNP [dm6]	T	G	3.366e^-4	0.886	DOWNSTREAM CG15270 INTERGENIC
3R	14342292	3R_14342292_SNP [dm3] 3R_18516570_SNP [dm6]	G	T	3.369e^-4	0.886	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	8587287	2R_8587287_SNP [dm3] 2R_12699782_SNP [dm6]	A	T	3.372e^-4	0.886	UPSTREAM wuc INTERGENIC
3L	7498481	3L_7498481_SNP [dm3] 3L_7505381_SNP [dm6]	A	T	3.379e^-4	0.886	DOWNSTREAM CG7548 INTERGENIC
X	14566074	X_14566074_SNP [dm3] X_14672041_SNP [dm6]	C	G	3.379e^-4	0.886	INTERGENIC
X	11673253	X_11673253_DEL [dm3] X_11779220_DEL [dm6]	TGATGCTGCT	T	3.382e^-4	0.886	UPSTREAM dy INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11760723	2R_11760723_SNP [dm3] 2R_15873218_SNP [dm6]	G	A	3.388e^-4	0.886	NON_SYNONYMOUS_CODING sli UTR_3_PRIME sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9462648	X_9462648_SNP [dm3] X_9568615_SNP [dm6]	T	C	3.391e^-4	0.886	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14359661	2R_14359661_SNP [dm3] 2R_18472156_SNP [dm6]	C	T	3.395e^-4	0.886	INTRON CG30116
2L	7766261	2L_7766261_SNP [dm3] 2L_7766261_SNP [dm6]	G	A	3.396e^-4	0.886	DOWNSTREAM CG7196 INTERGENIC
X	21875040	X_21875040_SNP [dm3] X_22473204_SNP [dm6]	T	C	3.403e^-4	0.886	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	7475389	3L_7475389_SNP [dm3] 3L_7482289_SNP [dm6]	T	C	3.404e^-4	0.886	INTERGENIC
2R	19752161	2R_19752161_SNP [dm3] 2R_23864638_SNP [dm6]	A	G	3.405e^-4	0.886	UTR_5_PRIME CG4585 UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	20086340	3L_20086340_SNP [dm3] 3L_20093240_SNP [dm6]	G	A	3.408e^-4	0.886	INTERGENIC
3R	24763360	3R_24763360_SNP [dm3] 3R_28937638_SNP [dm6]	G	T	3.412e^-4	0.886	INTRON CG14521
2R	19488117	2R_19488117_INS [dm3] 2R_23600594_INS [dm6]	G	GG	3.414e^-4	0.886	UPSTREAM CG42560 DOWNSTREAM CG10332 & 1 other INTRON CG42559 & 1 other
X	4006337	X_4006337_SNP [dm3] X_4112304_SNP [dm6]	C	T	3.433e^-4	0.887	SYNONYMOUS_CODING Nsun2	TF binding site mE1_TFBS_sens
3R	19625246	3R_19625246_SNP [dm3] 3R_23799524_SNP [dm6]	T	A	3.434e^-4	0.887	INTRON mbc
2R	16738843	2R_16738843_SNP [dm3] 2R_20851338_SNP [dm6]	G	A	3.436e^-4	0.887	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_sens
2L	7766262	2L_7766262_SNP [dm3] 2L_7766262_SNP [dm6]	G	A	3.443e^-4	0.887	DOWNSTREAM CG7196 INTERGENIC
2R	16226182	2R_16226182_SNP [dm3] 2R_20338677_SNP [dm6]	T	A	3.447e^-4	0.887	INTERGENIC
3L	10420961	3L_10420961_SNP [dm3] 3L_10427861_SNP [dm6]	G	A	3.451e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13649743	2R_13649743_SNP [dm3] 2R_17762238_SNP [dm6]	G	T	3.457e^-4	0.887	NON_SYNONYMOUS_CODING CG5009
X	19689605	X_19689605_SNP [dm3] X_19795572_SNP [dm6]	A	G	3.468e^-4	0.887	INTERGENIC
2R	10154319	2R_10154319_SNP [dm3] 2R_14266814_SNP [dm6]	C	T	3.468e^-4	0.887	INTRON CG8547
3L	8755448	3L_8755448_SNP [dm3] 3L_8762348_SNP [dm6]	G	C	3.472e^-4	0.887	NON_SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	4870046	3L_4870046_SNP [dm3] 3L_4870046_SNP [dm6]	G	A	3.472e^-4	0.887	INTRON CG17150	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16436723	X_16436723_DEL [dm3] X_16542690_DEL [dm6]	GAG	G	3.479e^-4	0.888	UTR_3_PRIME CG9902 DOWNSTREAM CG9902
2R	2756660	2R_2756660_SNP [dm3] 2R_6869155_SNP [dm6]	A	G	3.487e^-4	0.888	INTRON coro
2L	7944013	2L_7944013_SNP [dm3] 2L_7944013_SNP [dm6]	T	C	3.490e^-4	0.888	INTRON Snoo
3L	10113208	3L_10113208_SNP [dm3] 3L_10120108_SNP [dm6]	G	A	3.497e^-4	0.888	INTRON dpr6
3R	9528889	3R_9528889_SNP [dm3] 3R_13703167_SNP [dm6]	T	C	3.507e^-4	0.888	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
3L	16410413	3L_16410413_SNP [dm3] 3L_16417313_SNP [dm6]	T	C	3.513e^-4	0.888	UPSTREAM CG4573 DOWNSTREAM Aats-tyr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13868578	3R_13868578_SNP [dm3] 3R_18042856_SNP [dm6]	A	C	3.514e^-4	0.888	INTERGENIC
2R	9659745	2R_9659745_SNP [dm3] 2R_13772240_SNP [dm6]	C	A	3.520e^-4	0.888	INTRON Cpr50Ca
2R	18107865	2R_18107865_INS [dm3] 2R_22220360_INS [dm6]	T	TTAT	3.522e^-4	0.888	DOWNSTREAM Oatp58Db INTRON Oatp58Da	TF binding site mE1_TFBS_HSA
3R	13160822	3R_13160822_SNP [dm3] 3R_17335100_SNP [dm6]	T	G	3.530e^-4	0.888	INTRON beat-IIa
3L	14512065	3L_14512065_SNP [dm3] 3L_14518965_SNP [dm6]	T	C	3.536e^-4	0.888	DOWNSTREAM CG9592 & 1 other INTRON bbg
2L	21311557	2L_21311557_SNP [dm3] 2L_21311557_SNP [dm6]	A	C	3.541e^-4	0.888	INTRON crc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8557475	3R_8557475_SNP [dm3] 3R_12731753_SNP [dm6]	T	C	3.560e^-4	0.888	INTERGENIC
3L	17473313	3L_17473313_SNP [dm3] 3L_17480213_SNP [dm6]	G	A	3.570e^-4	0.888	UTR_3_PRIME CG6333 DOWNSTREAM qjt
3L	7599750	3L_7599750_SNP [dm3] 3L_7606650_SNP [dm6]	A	G	3.571e^-4	0.888	INTRON CG33275
3R	26676305	3R_26676305_DEL [dm3] 3R_30850583_DEL [dm6]	CA	T	3.575e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18979848	2R_18979848_SNP [dm3] 2R_23092325_SNP [dm6]	A	T	3.581e^-4	0.888	INTRON CG9876
X	8563663	X_8563663_SNP [dm3] X_8669630_SNP [dm6]	A	C	3.581e^-4	0.888	INTERGENIC
3L	6635174	3L_6635174_SNP [dm3] 3L_6642074_SNP [dm6]	A	T	3.582e^-4	0.888	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
3R	10187613	3R_10187613_SNP [dm3] 3R_14361891_SNP [dm6]	G	C	3.588e^-4	0.888	UPSTREAM CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12915085	3R_12915085_SNP [dm3] 3R_17089363_SNP [dm6]	G	A	3.592e^-4	0.888	NON_SYNONYMOUS_CODING cal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16170848	3L_16170848_SNP [dm3] 3L_16177748_SNP [dm6]	A	T	3.592e^-4	0.888	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11658759	2R_11658759_SNP [dm3] 2R_15771254_SNP [dm6]	A	G	3.601e^-4	0.888	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	14395582	2R_14395582_SNP [dm3] 2R_18508077_SNP [dm6]	A	G	3.607e^-4	0.888	INTERGENIC
2L	18725231	2L_18725231_SNP [dm3] 2L_18725231_SNP [dm6]	T	C	3.608e^-4	0.888	INTRON CG10348
3L	7834548	3L_7834548_SNP [dm3] 3L_7841448_SNP [dm6]	G	A	3.611e^-4	0.888	INTRON Pdp1	regulatory region REDfly_CRMs
2R	16953911	2R_16953911_SNP [dm3] 2R_21066406_SNP [dm6]	A	T	3.611e^-4	0.888	INTRON Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19749019	2R_19749019_SNP [dm3] 2R_23861496_SNP [dm6]	C	T	3.624e^-4	0.888	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	8164713	X_8164713_SNP [dm3] X_8270680_SNP [dm6]	A	T	3.628e^-4	0.888	NON_SYNONYMOUS_CODING Corp INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25916870	3R_25916870_SNP [dm3] 3R_30091148_SNP [dm6]	A	G	3.629e^-4	0.888	INTRON sima	TF binding site mE1_TFBS_Trl
2R	6091176	2R_6091176_SNP [dm3] 2R_10203671_SNP [dm6]	G	A	3.630e^-4	0.888	DOWNSTREAM Hr46 INTERGENIC
3R	8381831	3R_8381831_DEL [dm3] 3R_12556109_DEL [dm6]	ATATA	A	3.631e^-4	0.888	INTRON Octbeta2R
3L	10113215	3L_10113215_SNP [dm3] 3L_10120115_SNP [dm6]	T	C	3.635e^-4	0.888	INTRON dpr6
2R	15312220	2R_15312220_SNP [dm3] 2R_19424715_SNP [dm6]	G	T	3.638e^-4	0.888	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10365455	2R_10365455_SNP [dm3] 2R_14477950_SNP [dm6]	A	G	3.646e^-4	0.889	DOWNSTREAM CR44462 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17188297	2R_17188297_SNP [dm3] 2R_21300792_SNP [dm6]	T	A	3.654e^-4	0.889	INTRON CG42672
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	3.659e^-4	0.889	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	14223530	3L_14223530_SNP [dm3] 3L_14230430_SNP [dm6]	A	C	3.663e^-4	0.889	INTRON nuf
3R	9922258	3R_9922258_SNP [dm3] 3R_14096536_SNP [dm6]	A	C	3.665e^-4	0.889	DOWNSTREAM CG9920 INTRON CCHa1
2R	6582367	2R_6582367_SNP [dm3] 2R_10694862_SNP [dm6]	T	A	3.675e^-4	0.89	INTRON stan	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13973757	2R_13973757_SNP [dm3] 2R_18086252_SNP [dm6]	C	G	3.690e^-4	0.89	INTRON CG34386
2L	6240951	2L_6240951_SNP [dm3] 2L_6240951_SNP [dm6]	A	G	3.698e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	18317675	3L_18317675_SNP [dm3] 3L_18324575_SNP [dm6]	G	A	3.715e^-4	0.89	INTERGENIC
3L	16263147	3L_16263147_DEL [dm3] 3L_16270047_DEL [dm6]	GG	G	3.720e^-4	0.89	DOWNSTREAM CG34248 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	13586439	2L_13586439_SNP [dm3] 2L_13586439_SNP [dm6]	A	T	3.733e^-4	0.89	INTRON kuz
2R	16226168	2R_16226168_SNP [dm3] 2R_20338663_SNP [dm6]	G	C	3.737e^-4	0.89	INTERGENIC
2L	12403824	2L_12403824_SNP [dm3] 2L_12403824_SNP [dm6]	T	C	3.742e^-4	0.89	SYNONYMOUS_CODING vir-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7703526	3R_7703526_SNP [dm3] 3R_11877804_SNP [dm6]	T	A	3.744e^-4	0.89	INTRON sad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20800753	X_20800753_SNP [dm3] X_20929726_SNP [dm6]	G	A	3.746e^-4	0.89	INTERGENIC	transposable element FlyBase
2L	12257194	2L_12257194_SNP [dm3] 2L_12257194_SNP [dm6]	G	A	3.747e^-4	0.89	INTRON aret
3L	5485834	3L_5485834_SNP [dm3] 3L_5492734_SNP [dm6]	T	A	3.748e^-4	0.89	DOWNSTREAM CR44520 INTERGENIC
2R	17187923	2R_17187923_SNP [dm3] 2R_21300418_SNP [dm6]	T	C	3.749e^-4	0.89	INTRON CG42672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6998558	3L_6998558_SNP [dm3] 3L_7005458_SNP [dm6]	C	T	3.758e^-4	0.89	INTRON Mp
3L	2614938	3L_2614938_SNP [dm3] 3L_2614938_SNP [dm6]	T	G	3.759e^-4	0.89	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	16852110	2R_16852110_SNP [dm3] 2R_20964605_SNP [dm6]	A	G	3.765e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11290686	2L_11290686_SNP [dm3] 2L_11290686_SNP [dm6]	A	G	3.768e^-4	0.89	EXON CR43409
2R	18979835	2R_18979835_SNP [dm3] 2R_23092312_SNP [dm6]	T	A	3.773e^-4	0.89	INTRON CG9876
2R	16953892	2R_16953892_SNP [dm3] 2R_21066387_SNP [dm6]	A	T	3.788e^-4	0.89	INTRON Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17170770	2R_17170770_SNP [dm3] 2R_21283265_SNP [dm6]	G	T	3.792e^-4	0.89	INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3578914	3L_3578914_SNP [dm3] 3L_3578914_SNP [dm6]	T	G	3.798e^-4	0.89	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16286583	3L_16286583_SNP [dm3] 3L_16293483_SNP [dm6]	A	C	3.803e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2631064	3L_2631064_SNP [dm3] 3L_2631064_SNP [dm6]	G	A	3.804e^-4	0.89	UPSTREAM Pxn & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13588834	2L_13588834_SNP [dm3] 2L_13588834_SNP [dm6]	G	A	3.808e^-4	0.89	INTRON kuz
3R	25181027	3R_25181027_SNP [dm3] 3R_29355305_SNP [dm6]	A	C	3.810e^-4	0.89	DOWNSTREAM CR45547 INTERGENIC
2L	3084823	2L_3084823_SNP [dm3] 2L_3084823_SNP [dm6]	C	G	3.816e^-4	0.89	INTRON toc
3L	17285171	3L_17285171_SNP [dm3] 3L_17292071_SNP [dm6]	A	G	3.818e^-4	0.89	INTERGENIC
3R	9274257	3R_9274257_SNP [dm3] 3R_13448535_SNP [dm6]	C	T	3.819e^-4	0.89	INTERGENIC
X	14787007	X_14787007_SNP [dm3] X_14892974_SNP [dm6]	T	A	3.826e^-4	0.89	INTRON Flo2 & 1 other
3L	7144191	3L_7144191_SNP [dm3] 3L_7151091_SNP [dm6]	T	A	3.831e^-4	0.89	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16057135	2R_16057135_SNP [dm3] 2R_20169630_SNP [dm6]	T	C	3.835e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6635216	3L_6635216_SNP [dm3] 3L_6642116_SNP [dm6]	C	T	3.838e^-4	0.89	UPSTREAM CR45239 DOWNSTREAM CR45238 INTERGENIC
2L	11925975	2L_11925975_SNP [dm3] 2L_11925975_SNP [dm6]	T	A	3.839e^-4	0.89	INTRON Pde1c
2R	14395586	2R_14395586_SNP [dm3] 2R_18508081_SNP [dm6]	G	A	3.839e^-4	0.89	INTERGENIC
3R	18106846	3R_18106846_SNP [dm3] 3R_22281124_SNP [dm6]	C	A	3.842e^-4	0.89	INTRON SKIP
2R	19753665	2R_19753665_SNP [dm3] 2R_23866142_SNP [dm6]	T	A	3.844e^-4	0.89	UPSTREAM CG4585 DOWNSTREAM Thiolase INTRON CG5569	TF binding site mE1_TFBS_cad
X	12169839	X_12169839_SNP [dm3] X_12275806_SNP [dm6]	T	G	3.849e^-4	0.89	DOWNSTREAM CG45603 INTRON Ten-a
2L	22688113	2L_22688113_SNP [dm3] 2L_22795381_SNP [dm6]	A	C	3.850e^-4	0.89	INTERGENIC
3R	20319939	3R_20319939_SNP [dm3] 3R_24494217_SNP [dm6]	C	T	3.860e^-4	0.892	INTERGENIC
3L	8391997	3L_8391997_DEL [dm3] 3L_8398897_DEL [dm6]	TAATAAGT	T	3.873e^-4	0.894	INTRON CG7120
2R	16512477	2R_16512477_SNP [dm3] 2R_20624972_SNP [dm6]	A	C	3.878e^-4	0.894	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2R	9971339	2R_9971339_SNP [dm3] 2R_14083834_SNP [dm6]	A	G	3.903e^-4	0.897	INTRON Prosap
2L	8566007	2L_8566007_SNP [dm3] 2L_8566007_SNP [dm6]	T	G	3.906e^-4	0.897	INTRON Sema-1a
3R	2717416	3R_2717416_SNP [dm3] 3R_6891694_SNP [dm6]	A	T	3.908e^-4	0.897	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	4181910	2R_4181910_SNP [dm3] 2R_8294405_SNP [dm6]	C	G	3.910e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26617768	3R_26617768_SNP [dm3] 3R_30792046_SNP [dm6]	G	A	3.916e^-4	0.897	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9566384	3R_9566384_SNP [dm3] 3R_13740662_SNP [dm6]	T	G	3.925e^-4	0.897	INTRON CG34383
2R	15713170	2R_15713170_SNP [dm3] 2R_19825665_SNP [dm6]	A	T	3.931e^-4	0.897	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	11799557	2L_11799557_SNP [dm3] 2L_11799557_SNP [dm6]	T	A	3.934e^-4	0.897	INTRON crol	TF binding site mE1_TFBS_cad
2L	13584579	2L_13584579_SNP [dm3] 2L_13584579_SNP [dm6]	A	C	3.948e^-4	0.897	INTRON kuz
3R	24089167	3R_24089167_SNP [dm3] 3R_28263445_SNP [dm6]	G	T	3.962e^-4	0.897	SPLICE_SITE_REGION CG43125 SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
X	8563711	X_8563711_SNP [dm3] X_8669678_SNP [dm6]	C	T	3.964e^-4	0.897	INTERGENIC
2R	9907823	2R_9907823_SNP [dm3] 2R_14020318_SNP [dm6]	G	A	3.973e^-4	0.897	INTRON mam
2R	16998407	2R_16998407_SNP [dm3] 2R_21110902_SNP [dm6]	T	C	4.005e^-4	0.897	INTRON ktub
3R	6570565	3R_6570565_SNP [dm3] 3R_10744843_SNP [dm6]	T	G	4.018e^-4	0.897	INTRON TkR86C
2R	16083966	2R_16083966_SNP [dm3] 2R_20196461_SNP [dm6]	C	T	4.021e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3662387	2R_3662387_SNP [dm3] 2R_7774882_SNP [dm6]	T	A	4.021e^-4	0.897	INTRON CG30497 & 1 other
2L	11799612	2L_11799612_SNP [dm3] 2L_11799612_SNP [dm6]	C	T	4.028e^-4	0.897	INTRON crol	TF binding site mE1_TFBS_cad
3L	20082525	3L_20082525_SNP [dm3] 3L_20089425_SNP [dm6]	T	G	4.029e^-4	0.897	UPSTREAM sNPF-R INTERGENIC
2R	4894431	2R_4894431_SNP [dm3] 2R_9006926_SNP [dm6]	T	G	4.032e^-4	0.897	UPSTREAM Np DOWNSTREAM CG8172 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	12738152	3L_12738152_SNP [dm3] 3L_12745052_SNP [dm6]	T	C	4.036e^-4	0.897	UTR_3_PRIME CG32112 UPSTREAM CG32109
2R	1092378	2R_1092378_DEL [dm3] 2R_5204873_DEL [dm6]	GG	G	4.040e^-4	0.897	INTRON Nipped-A
2R	15923964	2R_15923964_SNP [dm3] 2R_20036459_SNP [dm6]	G	T	4.042e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10619972	2R_10619972_SNP [dm3] 2R_14732467_SNP [dm6]	A	G	4.043e^-4	0.897	INTERGENIC
X	16630566	X_16630566_SNP [dm3] X_16736533_SNP [dm6]	T	C	4.044e^-4	0.897	DOWNSTREAM TwdlY INTRON CG9634
2L	13895213	2L_13895213_SNP [dm3] 2L_13895213_SNP [dm6]	T	C	4.045e^-4	0.897	INTRON CenG1A	TF binding site mE1_TFBS_cad
X	8162796	X_8162796_SNP [dm3] X_8268763_SNP [dm6]	C	T	4.054e^-4	0.897	INTRON CG1632	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9922270	3R_9922270_SNP [dm3] 3R_14096548_SNP [dm6]	G	A	4.061e^-4	0.897	DOWNSTREAM CG9920 INTRON CCHa1
3L	17285727	3L_17285727_SNP [dm3] 3L_17292627_SNP [dm6]	T	A	4.067e^-4	0.897	INTERGENIC
X	19791614	X_19791614_SNP [dm3] X_19897581_SNP [dm6]	C	G	4.085e^-4	0.897	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	20045224	2L_20045224_SNP [dm3] 2L_20045224_SNP [dm6]	C	A	4.097e^-4	0.897	INTRON sNPF	transposable element FlyBase
2R	8604333	2R_8604333_INS [dm3] 2R_12716828_INS [dm6]	C	CCTCGC	4.098e^-4	0.897	INTRON CG42663
2L	11855537	2L_11855537_SNP [dm3] 2L_11855537_SNP [dm6]	A	G	4.102e^-4	0.897	INTRON Pde1c
3L	12568165	3L_12568165_SNP [dm3] 3L_12575065_SNP [dm6]	T	G	4.127e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13589617	2L_13589617_SNP [dm3] 2L_13589617_SNP [dm6]	C	T	4.127e^-4	0.897	INTRON kuz
3R	25186280	3R_25186280_SNP [dm3] 3R_29360558_SNP [dm6]	G	C	4.131e^-4	0.897	INTERGENIC
2R	8926781	2R_8926781_SNP [dm3] 2R_13039276_SNP [dm6]	A	G	4.132e^-4	0.897	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13672934	X_13672934_SNP [dm3] X_13778901_SNP [dm6]	T	C	4.132e^-4	0.897	UTR_3_PRIME rdgB DOWNSTREAM CtsB1
3L	12851268	3L_12851268_SNP [dm3] 3L_12858168_SNP [dm6]	G	C	4.135e^-4	0.897	UTR_3_PRIME CG32107 DOWNSTREAM Ent3
2R	20179654	2R_20179654_SNP [dm3] 2R_24292131_SNP [dm6]	G	T	4.135e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10517716	2R_10517716_SNP [dm3] 2R_14630211_SNP [dm6]	T	A	4.139e^-4	0.897	NON_SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17261347	2R_17261347_DEL [dm3] 2R_21373842_DEL [dm6]	CC	C	4.140e^-4	0.897	INTRON cv-2
3R	23881540	3R_23881540_SNP [dm3] 3R_28055818_SNP [dm6]	C	G	4.144e^-4	0.897	INTRON CG34362
X	9668272	X_9668272_DEL [dm3] X_9774239_DEL [dm6]	TC	T	4.155e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3796058	2L_3796058_SNP [dm3] 2L_3796058_SNP [dm6]	T	A	4.172e^-4	0.897	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5883371	X_5883371_SNP [dm3] X_5989338_SNP [dm6]	A	G	4.178e^-4	0.897	SYNONYMOUS_CODING CG5966 START_GAINED CG5966 UTR_5_PRIME CG5966
X	9831449	X_9831449_SNP [dm3] X_9937416_SNP [dm6]	T	C	4.181e^-4	0.897	INTERGENIC
X	17965350	X_17965350_SNP [dm3] X_18071317_SNP [dm6]	C	A	4.181e^-4	0.897	INTRON Dhc16F	TF binding site mE1_TFBS_chinmo
3R	25486109	3R_25486109_SNP [dm3] 3R_29660387_SNP [dm6]	T	G	4.183e^-4	0.897	UPSTREAM Dop1R2 INTERGENIC
3L	1935439	3L_1935439_SNP [dm3] 3L_1935439_SNP [dm6]	G	A	4.186e^-4	0.897	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_sens
2R	11666418	2R_11666418_SNP [dm3] 2R_15778913_SNP [dm6]	C	T	4.187e^-4	0.897	INTRON Zasp52
3L	7447955	3L_7447955_SNP [dm3] 3L_7454855_SNP [dm6]	G	T	4.190e^-4	0.897	DOWNSTREAM CG42458 INTERGENIC
X	2805332	X_2805332_SNP [dm3] X_2911299_SNP [dm6]	T	C	4.199e^-4	0.897	INTRON kirre
2R	19752129	2R_19752129_SNP [dm3] 2R_23864606_SNP [dm6]	G	A	4.200e^-4	0.897	UTR_5_PRIME CG4585 UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13908639	2L_13908639_SNP [dm3] 2L_13908639_SNP [dm6]	T	A	4.206e^-4	0.897	UPSTREAM Ance-2 INTRON Ance	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10438004	2R_10438004_DEL [dm3] 2R_14550499_DEL [dm6]	TGCCGCCAAATGCT...	T	4.208e^-4	0.897	INTRON ttv
3R	21520222	3R_21520222_SNP [dm3] 3R_25694500_SNP [dm6]	G	A	4.218e^-4	0.897	INTERGENIC
X	3417739	X_3417739_SNP [dm3] X_3523706_SNP [dm6]	A	G	4.222e^-4	0.897	SYNONYMOUS_CODING CG32791 UTR_5_PRIME CG32791 DOWNSTREAM CR44999
2L	13598278	2L_13598278_SNP [dm3] 2L_13598278_SNP [dm6]	G	T	4.224e^-4	0.897	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20045277	2L_20045277_SNP [dm3] 2L_20045277_SNP [dm6]	T	G	4.225e^-4	0.897	INTRON sNPF	transposable element FlyBase
3R	22814039	3R_22814039_SNP [dm3] 3R_26988317_SNP [dm6]	G	C	4.234e^-4	0.897	UPSTREAM CG31075 DOWNSTREAM CG31076 INTRON CG31075
2R	5558753	2R_5558753_SNP [dm3] 2R_9671248_SNP [dm6]	T	C	4.240e^-4	0.897	INTRON Mmp2
3L	20117364	3L_20117364_SNP [dm3] 3L_20124264_SNP [dm6]	A	C	4.255e^-4	0.897	DOWNSTREAM CG7365 INTERGENIC
3L	5865008	3L_5865008_SNP [dm3] 3L_5871908_SNP [dm6]	T	C	4.256e^-4	0.897	SYNONYMOUS_CODING CG5568
2L	1750086	2L_1750086_SNP [dm3] 2L_1750086_SNP [dm6]	A	G	4.256e^-4	0.897	SYNONYMOUS_STOP CG17646 DOWNSTREAM CG17712
2R	17093423	2R_17093423_SNP [dm3] 2R_21205918_SNP [dm6]	T	A	4.260e^-4	0.897	INTRON CG44245 & 1 other
3L	6846798	3L_6846798_SNP [dm3] 3L_6853698_SNP [dm6]	T	A	4.261e^-4	0.897	INTERGENIC
X	21875088	X_21875088_SNP [dm3] X_22473252_SNP [dm6]	A	G	4.268e^-4	0.897	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	9971850	2R_9971850_SNP [dm3] 2R_14084345_SNP [dm6]	T	C	4.269e^-4	0.897	INTRON Prosap	TF binding site mE1_TFBS_bab1
3R	10737443	3R_10737443_SNP [dm3] 3R_14911721_SNP [dm6]	A	C	4.270e^-4	0.897	INTERGENIC
2L	2099564	2L_2099564_SNP [dm3] 2L_2099564_SNP [dm6]	T	C	4.282e^-4	0.897	INTRON dpr3
2R	13143384	2R_13143384_SNP [dm3] 2R_17255879_SNP [dm6]	A	T	4.297e^-4	0.897	UPSTREAM CR43660 DOWNSTREAM CG43272 INTRON mbl
3L	1930574	3L_1930574_SNP [dm3] 3L_1930574_SNP [dm6]	T	A	4.303e^-4	0.897	INTRON Dbx
X	13673770	X_13673770_SNP [dm3] X_13779737_SNP [dm6]	T	A	4.303e^-4	0.897	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5444158	3L_5444158_SNP [dm3] 3L_5451058_SNP [dm6]	G	C	4.305e^-4	0.897	INTERGENIC
2R	14139937	2R_14139937_SNP [dm3] 2R_18252432_SNP [dm6]	A	C	4.306e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5078130	2R_5078130_SNP [dm3] 2R_9190625_SNP [dm6]	T	C	4.310e^-4	0.897	UPSTREAM CG8026 INTRON CG8026 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21854659	3L_21854659_SNP [dm3] 3L_21861559_SNP [dm6]	C	T	4.313e^-4	0.897	INTRON mub
3L	3578926	3L_3578926_SNP [dm3] 3L_3578926_SNP [dm6]	C	T	4.321e^-4	0.897	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4708694	3R_4708694_SNP [dm3] 3R_8882972_SNP [dm6]	C	G	4.325e^-4	0.897	INTRON pyd	TF binding site mE1_TFBS_HSA
2R	15798933	2R_15798933_SNP [dm3] 2R_19911428_SNP [dm6]	T	C	4.330e^-4	0.897	EXON CR44573
2R	7313202	2R_7313202_SNP [dm3] 2R_11425697_SNP [dm6]	A	C	4.334e^-4	0.897	INTRON Drip	TF binding site mE1_TFBS_inv
2R	4661362	2R_4661362_SNP [dm3] 2R_8773857_SNP [dm6]	G	A	4.344e^-4	0.897	INTERGENIC
2L	7636812	2L_7636812_SNP [dm3] 2L_7636812_SNP [dm6]	C	T	4.347e^-4	0.897	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8441911	3R_8441911_SNP [dm3] 3R_12616189_SNP [dm6]	C	T	4.347e^-4	0.897	INTERGENIC
2L	3957609	2L_3957609_SNP [dm3] 2L_3957609_SNP [dm6]	C	T	4.359e^-4	0.897	INTRON fred
2L	22686093	2L_22686093_SNP [dm3] 2L_22793361_SNP [dm6]	T	A	4.364e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8157054	2L_8157054_SNP [dm3] 2L_8157054_SNP [dm6]	A	C	4.369e^-4	0.897	SPLICE_SITE_REGION CG43394 UPSTREAM CG8552 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	8814243	X_8814243_SNP [dm3] X_8920210_SNP [dm6]	A	G	4.373e^-4	0.897	INTRON rdgA & 1 other
3R	26020587	3R_26020587_SNP [dm3] 3R_30194865_SNP [dm6]	G	C	4.385e^-4	0.897	UTR_3_PRIME CG15531
3L	15311532	3L_15311532_SNP [dm3] 3L_15318432_SNP [dm6]	T	C	4.388e^-4	0.897	INTERGENIC
2R	10025658	2R_10025658_SNP [dm3] 2R_14138153_SNP [dm6]	G	C	4.388e^-4	0.897	INTRON Prosap
3R	8557480	3R_8557480_SNP [dm3] 3R_12731758_SNP [dm6]	T	A	4.391e^-4	0.897	INTERGENIC
2R	12202526	2R_12202526_SNP [dm3] 2R_16315021_SNP [dm6]	C	T	4.391e^-4	0.897	SYNONYMOUS_CODING Nox	TF binding site mE1_TFBS_cad
3R	11488866	3R_11488866_SNP [dm3] 3R_15663144_SNP [dm6]	C	A	4.404e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13157961	3R_13157961_SNP [dm3] 3R_17332239_SNP [dm6]	G	T	4.413e^-4	0.897	INTRON beat-IIa
2L	12767436	2L_12767436_SNP [dm3] 2L_12767436_SNP [dm6]	G	A	4.417e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	6548455	2L_6548455_SNP [dm3] 2L_6548455_SNP [dm6]	C	A	4.418e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	3349047	2L_3349047_SNP [dm3] 2L_3349047_SNP [dm6]	A	C	4.419e^-4	0.897	INTRON E23
2R	7970047	2R_7970047_SNP [dm3] 2R_12082542_SNP [dm6]	C	T	4.419e^-4	0.897	DOWNSTREAM CG13186 INTERGENIC
X	2412883	X_2412883_SNP [dm3] X_2518850_SNP [dm6]	T	A	4.423e^-4	0.897	UPSTREAM trol INTRON trol	TF binding site mE1_TFBS_HSA
3L	14946176	3L_14946176_SNP [dm3] 3L_14953076_SNP [dm6]	C	G	4.425e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17361962	3R_17361962_SNP [dm3] 3R_21536240_SNP [dm6]	G	C	4.428e^-4	0.897	DOWNSTREAM CR44033 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13753831	3R_13753831_SNP [dm3] 3R_17928109_SNP [dm6]	C	T	4.435e^-4	0.897	INTRON cpo
X	2524541	X_2524541_SNP [dm3] X_2630508_SNP [dm6]	C	T	4.444e^-4	0.897	SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	806464	3L_806464_SNP [dm3] 3L_806464_SNP [dm6]	C	A	4.460e^-4	0.897	INTERGENIC
3R	13721571	3R_13721571_INS [dm3] 3R_17895849_INS [dm6]	A	ATTCTGT	4.462e^-4	0.897	INTRON Rim
2R	10988326	2R_10988326_SNP [dm3] 2R_15100821_SNP [dm6]	C	T	4.462e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19749248	2R_19749248_SNP [dm3] 2R_23861725_SNP [dm6]	C	T	4.466e^-4	0.897	UTR_5_PRIME TBPH INTRON TBPH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	13529905	3R_13529905_SNP [dm3] 3R_17704183_SNP [dm6]	T	C	4.470e^-4	0.897	INTRON osa	TF binding site BDTNP1_TFBS_z
2R	16851692	2R_16851692_SNP [dm3] 2R_20964187_SNP [dm6]	G	A	4.472e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7005538	3L_7005538_SNP [dm3] 3L_7012438_SNP [dm6]	C	T	4.477e^-4	0.897	INTRON Mp	TF binding site mE1_TFBS_bab1
2L	19912535	2L_19912535_SNP [dm3] 2L_19912535_SNP [dm6]	A	G	4.478e^-4	0.897	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2R	10154122	2R_10154122_SNP [dm3] 2R_14266617_SNP [dm6]	A	C	4.486e^-4	0.897	INTRON CG8547
3R	20011166	3R_20011166_SNP [dm3] 3R_24185444_SNP [dm6]	A	G	4.491e^-4	0.897	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17411752	2R_17411752_SNP [dm3] 2R_21524247_SNP [dm6]	C	T	4.493e^-4	0.897	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14139789	2R_14139789_SNP [dm3] 2R_18252284_SNP [dm6]	A	G	4.498e^-4	0.897	INTERGENIC
3R	5848516	3R_5848516_SNP [dm3] 3R_10022794_SNP [dm6]	T	A	4.500e^-4	0.897	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
2R	15315933	2R_15315933_SNP [dm3] 2R_19428428_SNP [dm6]	G	A	4.501e^-4	0.897	SPLICE_SITE_REGION CalpA SYNONYMOUS_CODING CalpA
3L	14875583	3L_14875583_SNP [dm3] 3L_14882483_SNP [dm6]	T	C	4.503e^-4	0.897	DOWNSTREAM CG17839 INTERGENIC
2R	17171026	2R_17171026_SNP [dm3] 2R_21283521_SNP [dm6]	T	A	4.504e^-4	0.897	INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10706076	2L_10706076_SNP [dm3] 2L_10706076_SNP [dm6]	C	A	4.507e^-4	0.897	INTRON Lip2
2R	15588170	2R_15588170_SNP [dm3] 2R_19700665_SNP [dm6]	G	T	4.516e^-4	0.897	SYNONYMOUS_CODING Obp56c	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	13763180	2R_13763180_SNP [dm3] 2R_17875675_SNP [dm6]	T	C	4.519e^-4	0.897	INTRON Elk
2L	10154016	2L_10154016_SNP [dm3] 2L_10154016_SNP [dm6]	C	T	4.523e^-4	0.897	SYNONYMOUS_CODING CG4839 INTRON CG44153
3L	7475398	3L_7475398_SNP [dm3] 3L_7482298_SNP [dm6]	T	C	4.525e^-4	0.897	INTERGENIC
3L	6378049	3L_6378049_SNP [dm3] 3L_6384949_SNP [dm6]	A	T	4.526e^-4	0.897	INTERGENIC
2L	12163356	2L_12163356_SNP [dm3] 2L_12163356_SNP [dm6]	G	T	4.528e^-4	0.897	UPSTREAM ZnT33D DOWNSTREAM CG31861 INTRON CG31760
2R	10024163	2R_10024163_SNP [dm3] 2R_14136658_SNP [dm6]	C	A	4.529e^-4	0.897	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18263732	3R_18263732_SNP [dm3] 3R_22438010_SNP [dm6]	T	C	4.531e^-4	0.897	INTERGENIC
2L	12167612	2L_12167612_SNP [dm3] 2L_12167612_SNP [dm6]	T	A	4.533e^-4	0.897	DOWNSTREAM ZnT33D INTRON CG31760
3R	9264011	3R_9264011_SNP [dm3] 3R_13438289_SNP [dm6]	T	G	4.534e^-4	0.897	DOWNSTREAM CR42756 INTERGENIC
2L	1451794	2L_1451794_DEL [dm3] 2L_1451794_DEL [dm6]	AA	A	4.536e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21874996	X_21874996_SNP [dm3] X_22473160_SNP [dm6]	T	C	4.540e^-4	0.897	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	5230418	2R_5230418_SNP [dm3] 2R_9342913_SNP [dm6]	G	A	4.541e^-4	0.897	INTRON CG13954 & 1 other
3L	7474613	3L_7474613_SNP [dm3] 3L_7481513_SNP [dm6]	G	T	4.542e^-4	0.897	INTERGENIC
2L	19927216	2L_19927216_INS [dm3] 2L_19927216_INS [dm6]	C	CGGGC	4.544e^-4	0.897	INTRON sick
X	13272748	X_13272748_SNP [dm3] X_13378715_SNP [dm6]	G	C	4.562e^-4	0.898	SYNONYMOUS_CODING CG1640
3R	17618552	3R_17618552_SNP [dm3] 3R_21792830_SNP [dm6]	G	T	4.576e^-4	0.898	INTRON CASK	TF binding site mE1_TFBS_cad
2R	19488165	2R_19488165_SNP [dm3] 2R_23600642_SNP [dm6]	G	A	4.578e^-4	0.898	SYNONYMOUS_CODING CG42559 UTR_5_PRIME CG42560 UPSTREAM CG42560 DOWNSTREAM CG10332 & 1 other
2R	12522996	2R_12522996_SNP [dm3] 2R_16635491_SNP [dm6]	T	A	4.579e^-4	0.898	INTRON Alk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19752546	2R_19752546_SNP [dm3] 2R_23865023_SNP [dm6]	A	G	4.585e^-4	0.898	UPSTREAM CG4585 & 1 other INTRON CG4585	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	13920024	3R_13920024_SNP [dm3] 3R_18094302_SNP [dm6]	G	T	4.597e^-4	0.898	INTRON sr
2R	7956096	2R_7956096_SNP [dm3] 2R_12068591_SNP [dm6]	A	G	4.601e^-4	0.898	INTRON CG8888
3L	21063560	3L_21063560_SNP [dm3] 3L_21070460_SNP [dm6]	G	T	4.608e^-4	0.898	INTRON siz	TF binding site mE1_TFBS_sens
3L	4423377	3L_4423377_SNP [dm3] 3L_4423377_SNP [dm6]	G	C	4.608e^-4	0.898	INTRON CG15020
2L	10682731	2L_10682731_SNP [dm3] 2L_10682731_SNP [dm6]	T	C	4.611e^-4	0.898	DOWNSTREAM CG17105 & 2 others INTERGENIC
2L	6548443	2L_6548443_SNP [dm3] 2L_6548443_SNP [dm6]	A	G	4.612e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	14538466	3R_14538466_SNP [dm3] 3R_18712744_SNP [dm6]	G	A	4.615e^-4	0.898	UTR_5_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_Trl
3L	16897718	3L_16897718_SNP [dm3] 3L_16904618_SNP [dm6]	G	A	4.616e^-4	0.898	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	20091957	3L_20091957_SNP [dm3] 3L_20098857_SNP [dm6]	G	T	4.618e^-4	0.898	UTR_3_PRIME CG14186	TF binding site mE1_TFBS_cad
3R	25561213	3R_25561213_SNP [dm3] 3R_29735491_SNP [dm6]	C	A	4.624e^-4	0.899	NON_SYNONYMOUS_CODING CG7601 DOWNSTREAM Kul
2R	16088563	2R_16088563_SNP [dm3] 2R_20201058_SNP [dm6]	A	G	4.628e^-4	0.899	INTERGENIC
3L	4871606	3L_4871606_SNP [dm3] 3L_4871606_SNP [dm6]	G	T	4.645e^-4	0.9	INTRON CG17150
X	13983866	X_13983866_SNP [dm3] X_14089833_SNP [dm6]	G	T	4.646e^-4	0.9	INTERGENIC
2R	10111327	2R_10111327_SNP [dm3] 2R_14223822_SNP [dm6]	A	G	4.648e^-4	0.9	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14996482	2L_14996482_SNP [dm3] 2L_14996482_SNP [dm6]	A	G	4.670e^-4	0.902	INTRON mol	TF binding site BDTNP1_TFBS_dl
3R	9579998	3R_9579998_SNP [dm3] 3R_13754276_SNP [dm6]	A	G	4.674e^-4	0.902	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12236210	3R_12236210_SNP [dm3] 3R_16410488_SNP [dm6]	G	A	4.679e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13765833	2R_13765833_SNP [dm3] 2R_17878328_SNP [dm6]	A	T	4.688e^-4	0.902	SYNONYMOUS_CODING CG30325 INTRON Elk
3R	13919964	3R_13919964_SNP [dm3] 3R_18094242_SNP [dm6]	G	A	4.688e^-4	0.902	INTRON sr
3L	2270520	3L_2270520_SNP [dm3] 3L_2270520_SNP [dm6]	A	T	4.690e^-4	0.902	DOWNSTREAM CG32302 INTRON yellow-g	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4095887	3L_4095887_SNP [dm3] 3L_4095887_SNP [dm6]	G	A	4.693e^-4	0.902	INTRON CG14995	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10195029	2R_10195029_SNP [dm3] 2R_14307524_SNP [dm6]	C	A	4.700e^-4	0.902	UPSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10621224	2R_10621224_SNP [dm3] 2R_14733719_SNP [dm6]	C	T	4.703e^-4	0.902	INTERGENIC
3R	12608026	3R_12608026_SNP [dm3] 3R_16782304_SNP [dm6]	T	A	4.708e^-4	0.902	INTERGENIC
2L	2345008	2L_2345008_SNP [dm3] 2L_2345008_SNP [dm6]	A	C	4.713e^-4	0.902	INTRON CG9967 & 1 other
3L	10827717	3L_10827717_SNP [dm3] 3L_10834617_SNP [dm6]	T	G	4.723e^-4	0.902	INTERGENIC
3R	18881969	3R_18881969_SNP [dm3] 3R_23056247_SNP [dm6]	A	T	4.723e^-4	0.902	NON_SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9343476	2R_9343476_SNP [dm3] 2R_13455971_SNP [dm6]	C	T	4.731e^-4	0.902	INTRON arr
3L	7728624	3L_7728624_SNP [dm3] 3L_7735524_SNP [dm6]	A	G	4.746e^-4	0.902	INTRON CG32373 & 1 other
3R	26490751	3R_26490751_DEL [dm3] 3R_30665029_DEL [dm6]	CTCTTTTCGCTG...	C	4.748e^-4	0.902	EXON CR45191
2L	22684557	2L_22684557_SNP [dm3] 2L_22791825_SNP [dm6]	C	T	4.753e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12625305	3R_12625305_SNP [dm3] 3R_16799583_SNP [dm6]	G	A	4.753e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	18730044	X_18730044_SNP [dm3] X_18836011_SNP [dm6]	C	A	4.765e^-4	0.902	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18457822	3R_18457822_SNP [dm3] 3R_22632100_SNP [dm6]	G	A	4.773e^-4	0.902	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	14795271	3R_14795271_SNP [dm3] 3R_18969549_SNP [dm6]	T	C	4.779e^-4	0.902	SYNONYMOUS_CODING CG42613 UTR_5_PRIME CG42613 UTR_3_PRIME CG43732
3L	695433	3L_695433_SNP [dm3] 3L_695433_SNP [dm6]	A	T	4.782e^-4	0.902	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	22690456	2L_22690456_SNP [dm3] 2L_22797724_SNP [dm6]	G	C	4.785e^-4	0.902	NON_SYNONYMOUS_CODING CG40439	TF binding site mE1_TFBS_Ubx
3R	2733673	3R_2733673_SNP [dm3] 3R_6907951_SNP [dm6]	G	C	4.788e^-4	0.902	UTR_3_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3419727	2L_3419727_SNP [dm3] 2L_3419727_SNP [dm6]	A	G	4.810e^-4	0.902	INTRON pgant2
2R	7184058	2R_7184058_SNP [dm3] 2R_11296553_SNP [dm6]	G	C	4.812e^-4	0.902	UPSTREAM CG42336 INTRON CG42336	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10111378	2R_10111378_SNP [dm3] 2R_14223873_SNP [dm6]	G	T	4.814e^-4	0.902	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10111379	2R_10111379_SNP [dm3] 2R_14223874_SNP [dm6]	C	T	4.814e^-4	0.902	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9343481	2R_9343481_SNP [dm3] 2R_13455976_SNP [dm6]	A	G	4.815e^-4	0.902	SPLICE_SITE_REGION arr INTRON arr
2L	17051822	2L_17051822_SNP [dm3] 2L_17051822_SNP [dm6]	A	G	4.816e^-4	0.902	INTERGENIC
3L	7834530	3L_7834530_SNP [dm3] 3L_7841430_SNP [dm6]	C	T	4.818e^-4	0.902	INTRON Pdp1	regulatory region REDfly_CRMs

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.106e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01241

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	6	0.0498

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1909 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	9082358	X_9082358_DEL [dm3] X_9188325_DEL [dm6]	AA	A	2.710e^-7	0.426	UTR_3_PRIME mei-P26 DOWNSTREAM CG12115
X	9082356	X_9082356_SNP [dm3] X_9188323_SNP [dm6]	A	G	4.537e^-7	0.426	UTR_3_PRIME mei-P26
3R	20011166	3R_20011166_SNP [dm3] 3R_24185444_SNP [dm6]	A	G	8.586e^-7	0.436	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13758971	2L_13758971_SNP [dm3] 2L_13758971_SNP [dm6]	T	A	1.094e^-6	0.436	INTRON TM9SF4
X	9082357	X_9082357_SNP [dm3] X_9188324_SNP [dm6]	A	T	1.571e^-6	0.436	UTR_3_PRIME mei-P26
X	9081161	X_9081161_SNP [dm3] X_9187128_SNP [dm6]	C	A	1.778e^-6	0.436	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl
X	14888006	X_14888006_SNP [dm3] X_14993973_SNP [dm6]	C	T	1.928e^-6	0.436	INTRON eag	TF binding site mE1_TFBS_HSA
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	2.026e^-6	0.436	INTRON CG9336
X	14887821	X_14887821_SNP [dm3] X_14993788_SNP [dm6]	A	T	2.094e^-6	0.436	INTRON eag	TF binding site mE1_TFBS_HSA
X	14888016	X_14888016_SNP [dm3] X_14993983_SNP [dm6]	C	T	2.800e^-6	0.511	INTRON eag	TF binding site mE1_TFBS_HSA
2L	13758926	2L_13758926_SNP [dm3] 2L_13758926_SNP [dm6]	T	A	2.998e^-6	0.511	INTRON TM9SF4
2L	7104287	2L_7104287_SNP [dm3] 2L_7104287_SNP [dm6]	T	C	4.637e^-6	0.569	INTRON Pvf3
3L	8923662	3L_8923662_SNP [dm3] 3L_8930562_SNP [dm6]	T	C	4.809e^-6	0.569	SYNONYMOUS_CODING Tsp66E
X	8518961	X_8518961_SNP [dm3] X_8624928_SNP [dm6]	A	G	5.126e^-6	0.569	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	2267001	X_2267001_SNP [dm3] X_2372968_SNP [dm6]	G	A	5.158e^-6	0.569	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo
3R	17740665	3R_17740665_SNP [dm3] 3R_21914943_SNP [dm6]	T	A	5.445e^-6	0.569	SYNONYMOUS_CODING CG17843
X	8519309	X_8519309_SNP [dm3] X_8625276_SNP [dm6]	G	T	5.639e^-6	0.569	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	20011232	3R_20011232_SNP [dm3] 3R_24185510_SNP [dm6]	A	G	5.731e^-6	0.569	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20011165	3R_20011165_SNP [dm3] 3R_24185443_SNP [dm6]	G	A	6.262e^-6	0.569	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4914397	3R_4914397_SNP [dm3] 3R_9088675_SNP [dm6]	C	A	6.296e^-6	0.569	INTRON pum
3L	1935439	3L_1935439_SNP [dm3] 3L_1935439_SNP [dm6]	G	A	6.369e^-6	0.569	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_sens
X	2398247	X_2398247_SNP [dm3] X_2504214_SNP [dm6]	T	C	7.247e^-6	0.614	INTRON trol
X	9081527	X_9081527_DEL [dm3] X_9187494_DEL [dm6]	AAAA	A	7.740e^-6	0.614	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8978435	2L_8978435_SNP [dm3] 2L_8978435_SNP [dm6]	G	A	7.856e^-6	0.614	SYNONYMOUS_CODING CG13101
X	9083500	X_9083500_SNP [dm3] X_9189467_SNP [dm6]	C	T	8.529e^-6	0.64	NON_SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	8427950	X_8427950_INS [dm3] X_8533917_INS [dm6]	C	CGGAC	1.040e^-5	0.751	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4390563	X_4390563_SNP [dm3] X_4496530_SNP [dm6]	C	G	1.156e^-5	0.802	INTRON CR32773
3R	10946591	3R_10946591_SNP [dm3] 3R_15120869_SNP [dm6]	T	G	1.217e^-5	0.802	INTRON CG42788
2L	5213649	2L_5213649_SNP [dm3] 2L_5213649_SNP [dm6]	C	G	1.342e^-5	0.802	INTRON CG7742	TF binding site mE1_TFBS_cad
3R	15728462	3R_15728462_SNP [dm3] 3R_19902740_SNP [dm6]	G	C	1.361e^-5	0.802	DOWNSTREAM Surf6 INTRON CG4538	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	20600291	2L_20600291_SNP [dm3] 2L_20600291_SNP [dm6]	T	A	1.390e^-5	0.802	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9111179	X_9111179_SNP [dm3] X_9217146_SNP [dm6]	T	C	1.447e^-5	0.802	DOWNSTREAM CG15368 & 1 other INTRON CG15369
3R	25170054	3R_25170054_SNP [dm3] 3R_29344332_SNP [dm6]	G	A	1.484e^-5	0.802	INTERGENIC
2L	11304762	2L_11304762_SNP [dm3] 2L_11304762_SNP [dm6]	C	A	1.488e^-5	0.802	INTERGENIC
2L	20598750	2L_20598750_SNP [dm3] 2L_20598750_SNP [dm6]	G	A	1.520e^-5	0.802	INTRON CR44909
3R	20924807	3R_20924807_SNP [dm3] 3R_25099085_SNP [dm6]	T	A	1.547e^-5	0.802	INTRON CG33095 & 1 other
X	14888946	X_14888946_SNP [dm3] X_14994913_SNP [dm6]	C	T	1.583e^-5	0.802	INTRON eag
X	14888809	X_14888809_SNP [dm3] X_14994776_SNP [dm6]	A	C	1.676e^-5	0.827	INTRON eag
X	14889046	X_14889046_SNP [dm3] X_14995013_SNP [dm6]	T	C	1.723e^-5	0.829	INTRON eag
3R	23625538	3R_23625538_SNP [dm3] 3R_27799816_SNP [dm6]	G	C	1.810e^-5	0.835	INTRON CG34353
2L	20628827	2L_20628827_SNP [dm3] 2L_20628827_SNP [dm6]	A	T	1.859e^-5	0.835	INTERGENIC
3R	14672975	3R_14672975_SNP [dm3] 3R_18847253_SNP [dm6]	T	A	1.887e^-5	0.835	INTRON CG18208
3L	2589083	3L_2589083_SNP [dm3] 3L_2589083_SNP [dm6]	C	A	1.914e^-5	0.835	UPSTREAM dos DOWNSTREAM RpL8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25612302	3R_25612302_SNP [dm3] 3R_29786580_SNP [dm6]	A	G	1.964e^-5	0.837	INTRON kay
X	9108991	X_9108991_INS [dm3] X_9214958_INS [dm6]	T	TCGCAGGTAT	2.068e^-5	0.84	UPSTREAM CG15368 INTRON Obp8a
2R	17962080	2R_17962080_SNP [dm3] 2R_22074575_SNP [dm6]	T	C	2.093e^-5	0.84	SYNONYMOUS_CODING CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12666919	3L_12666919_SNP [dm3] 3L_12673819_SNP [dm6]	T	G	2.149e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666920	3L_12666920_SNP [dm3] 3L_12673820_SNP [dm6]	G	A	2.149e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14672973	3R_14672973_SNP [dm3] 3R_18847251_SNP [dm6]	A	T	2.274e^-5	0.856	INTRON CG18208
X	14888879	X_14888879_SNP [dm3] X_14994846_SNP [dm6]	G	A	2.281e^-5	0.856	INTRON eag
2L	5858625	2L_5858625_SNP [dm3] 2L_5858625_SNP [dm6]	G	A	2.475e^-5	0.91	INTERGENIC
3R	7557338	3R_7557338_SNP [dm3] 3R_11731616_SNP [dm6]	T	A	2.542e^-5	0.913	INTRON CG12594
X	8519528	X_8519528_DEL [dm3] X_8625495_DEL [dm6]	TG	T	2.584e^-5	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	14887858	X_14887858_DEL [dm3] X_14993825_DEL [dm6]	TGCAACAACTCT...	T	2.739e^-5	0.913	INTRON eag	TF binding site mE1_TFBS_HSA
3L	12666917	3L_12666917_SNP [dm3] 3L_12673817_SNP [dm6]	A	G	2.758e^-5	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12812837	3R_12812837_SNP [dm3] 3R_16987115_SNP [dm6]	A	G	2.780e^-5	0.913	UPSTREAM CG18622 INTRON CG18622
2L	8936492	2L_8936492_SNP [dm3] 2L_8936492_SNP [dm6]	C	A	2.855e^-5	0.913	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13259722	X_13259722_SNP [dm3] X_13365689_SNP [dm6]	T	C	2.906e^-5	0.913	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13660862	3R_13660862_INS [dm3] 3R_17835140_INS [dm6]	T	TAGGT	2.938e^-5	0.913	INTRON tinc
2R	18251897	2R_18251897_SNP [dm3] 2R_22364392_SNP [dm6]	C	T	2.960e^-5	0.913	INTRON Liprin-gamma
3R	17901138	3R_17901138_SNP [dm3] 3R_22075416_SNP [dm6]	A	T	3.022e^-5	0.913	INTRON how
4	655975	4_655975_SNP [dm3] 4_635349_SNP [dm6]	A	G	3.137e^-5	0.913	UTR_3_PRIME CG1732 DOWNSTREAM CG9935
2R	15466957	2R_15466957_SNP [dm3] 2R_19579452_SNP [dm6]	C	T	3.190e^-5	0.913	INTRON sm
3L	583211	3L_583211_SNP [dm3] 3L_583211_SNP [dm6]	A	G	3.193e^-5	0.913	UTR_3_PRIME Kah DOWNSTREAM Ppm1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8973934	2L_8973934_SNP [dm3] 2L_8973934_SNP [dm6]	T	C	3.231e^-5	0.913	INTRON CG9541
X	21875040	X_21875040_SNP [dm3] X_22473204_SNP [dm6]	T	C	3.355e^-5	0.913	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	4356593	2R_4356593_SNP [dm3] 2R_8469088_SNP [dm6]	C	G	3.550e^-5	0.913	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
X	8519070	X_8519070_SNP [dm3] X_8625037_SNP [dm6]	A	G	3.557e^-5	0.913	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
3R	10947333	3R_10947333_SNP [dm3] 3R_15121611_SNP [dm6]	A	T	3.562e^-5	0.913	INTRON CG42788	regulatory region REDfly_CRMs
3R	14672976	3R_14672976_SNP [dm3] 3R_18847254_SNP [dm6]	T	A	3.631e^-5	0.913	INTRON CG18208
X	8453754	X_8453754_SNP [dm3] X_8559721_SNP [dm6]	G	A	3.674e^-5	0.913	NON_SYNONYMOUS_CODING CG12112 UPSTREAM IntS4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	13660865	3R_13660865_SNP [dm3] 3R_17835143_SNP [dm6]	A	G	3.691e^-5	0.913	INTRON tinc
3L	6715938	3L_6715938_SNP [dm3] 3L_6722838_SNP [dm6]	A	G	3.767e^-5	0.913	INTERGENIC	regulatory region REDfly_CRMs
X	9084290	X_9084290_SNP [dm3] X_9190257_SNP [dm6]	C	T	3.852e^-5	0.913	DOWNSTREAM mei-P26 INTRON CG12115
2L	15480665	2L_15480665_SNP [dm3] 2L_15480665_SNP [dm6]	G	A	3.857e^-5	0.913	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	16315105	X_16315105_SNP [dm3] X_16421072_SNP [dm6]	A	C	3.936e^-5	0.913	UPSTREAM AnxB11 INTRON AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20855603	3R_20855603_SNP [dm3] 3R_25029881_SNP [dm6]	T	G	3.988e^-5	0.913	SYNONYMOUS_CODING Smg6 DOWNSTREAM Hr96	TF binding site BDTNP1_TFBS_twi
2L	5213427	2L_5213427_SNP [dm3] 2L_5213427_SNP [dm6]	A	G	4.022e^-5	0.913	SYNONYMOUS_CODING CG7742 DOWNSTREAM Cyp28d1	TF binding site mE1_TFBS_cad
2L	5689765	2L_5689765_SNP [dm3] 2L_5689765_SNP [dm6]	A	T	4.040e^-5	0.913	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2R	11936670	2R_11936670_SNP [dm3] 2R_16049165_SNP [dm6]	C	T	4.049e^-5	0.913	INTRON CG8405
3R	27691037	3R_27691037_SNP [dm3] 3R_31865315_SNP [dm6]	C	T	4.111e^-5	0.913	SYNONYMOUS_CODING heph
3L	1063251	3L_1063251_DEL [dm3] 3L_1063251_DEL [dm6]	AG	A	4.112e^-5	0.913	INTRON bab1
3R	26111188	3R_26111188_SNP [dm3] 3R_30285466_SNP [dm6]	A	G	4.135e^-5	0.913	INTRON hdc	TF binding site mE1_TFBS_HSA
X	2434133	X_2434133_INS [dm3] X_2540100_INS [dm6]	T	TT	4.181e^-5	0.913	INTRON trol
2L	5805680	2L_5805680_SNP [dm3] 2L_5805680_SNP [dm6]	A	G	4.272e^-5	0.913	INTRON CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	10067766	X_10067766_SNP [dm3] X_10173733_SNP [dm6]	G	A	4.273e^-5	0.913	INTRON CG43902 & 1 other
2L	15004908	2L_15004908_SNP [dm3] 2L_15004908_SNP [dm6]	A	T	4.338e^-5	0.913	UPSTREAM dyn-p25 INTERGENIC	transposable element FlyBase
X	9085253	X_9085253_SNP [dm3] X_9191220_SNP [dm6]	G	T	4.385e^-5	0.913	UPSTREAM CG12115 & 1 other INTERGENIC
X	21875378	X_21875378_SNP [dm3] X_22473542_SNP [dm6]	C	T	4.389e^-5	0.913	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7496084	2L_7496084_INS [dm3] 2L_7496084_INS [dm6]	T	TTCT	4.463e^-5	0.913	UTR_5_PRIME Ziz DOWNSTREAM Obp28a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22978204	3R_22978204_INS [dm3] 3R_27152482_INS [dm6]	T	TAT	4.524e^-5	0.913	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21875005	X_21875005_SNP [dm3] X_22473169_SNP [dm6]	T	C	4.548e^-5	0.913	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	6256244	3L_6256244_SNP [dm3] 3L_6263144_SNP [dm6]	T	A	4.613e^-5	0.913	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6495549	2R_6495549_SNP [dm3] 2R_10608044_SNP [dm6]	T	A	4.632e^-5	0.913	INTRON psq
3R	25529707	3R_25529707_SNP [dm3] 3R_29703985_SNP [dm6]	G	A	4.717e^-5	0.913	INTERGENIC
X	8217361	X_8217361_SNP [dm3] X_8323328_SNP [dm6]	T	C	4.762e^-5	0.913	INTRON nAChRalpha3
3L	14317329	3L_14317329_INS [dm3] 3L_14324229_INS [dm6]	A	AT	4.769e^-5	0.913	INTRON fz & 1 other
3R	13660719	3R_13660719_SNP [dm3] 3R_17834997_SNP [dm6]	G	T	4.771e^-5	0.913	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3R	25612267	3R_25612267_SNP [dm3] 3R_29786545_SNP [dm6]	A	G	4.970e^-5	0.934	INTRON kay
2L	7053989	2L_7053989_SNP [dm3] 2L_7053989_SNP [dm6]	C	T	5.010e^-5	0.934	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16312669	X_16312669_SNP [dm3] X_16418636_SNP [dm6]	G	C	5.054e^-5	0.934	INTRON AnxB11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15405290	3R_15405290_SNP [dm3] 3R_19579568_SNP [dm6]	G	T	5.194e^-5	0.934	INTRON Dys
3R	27794322	3R_27794322_SNP [dm3] 3R_31968600_SNP [dm6]	G	C	5.344e^-5	0.934	INTRON heph
X	10068012	X_10068012_SNP [dm3] X_10173979_SNP [dm6]	T	G	5.351e^-5	0.934	INTRON CG43902 & 1 other
3R	22978241	3R_22978241_SNP [dm3] 3R_27152519_SNP [dm6]	C	T	5.460e^-5	0.934	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7202421	2L_7202421_SNP [dm3] 2L_7202421_SNP [dm6]	C	T	5.498e^-5	0.934	INTRON CG4502
X	19486366	X_19486366_SNP [dm3] X_19592333_SNP [dm6]	G	T	5.514e^-5	0.934	UPSTREAM CG14205 INTERGENIC
3L	12628142	3L_12628142_SNP [dm3] 3L_12635042_SNP [dm6]	A	G	5.590e^-5	0.934	INTRON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9109006	X_9109006_SNP [dm3] X_9214973_SNP [dm6]	C	T	5.663e^-5	0.934	UPSTREAM CG15368 INTRON Obp8a
3R	20901280	3R_20901280_SNP [dm3] 3R_25075558_SNP [dm6]	G	T	5.728e^-5	0.934	UPSTREAM CG9996 INTRON CG11920	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21875151	X_21875151_SNP [dm3] X_22473315_SNP [dm6]	A	G	5.732e^-5	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	5277512	2L_5277512_SNP [dm3] 2L_5277512_SNP [dm6]	T	C	5.741e^-5	0.934	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21874996	X_21874996_SNP [dm3] X_22473160_SNP [dm6]	T	C	5.815e^-5	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	15004918	2L_15004918_SNP [dm3] 2L_15004918_SNP [dm6]	T	A	5.850e^-5	0.934	UPSTREAM dyn-p25 INTERGENIC	transposable element FlyBase
X	9084345	X_9084345_SNP [dm3] X_9190312_SNP [dm6]	T	A	5.873e^-5	0.934	INTRON CG12115
3L	5917882	3L_5917882_SNP [dm3] 3L_5924782_SNP [dm6]	A	G	6.060e^-5	0.934	INTRON Vap-33B
3R	19969775	3R_19969775_SNP [dm3] 3R_24144053_SNP [dm6]	T	C	6.155e^-5	0.934	INTRON Kal1
3R	17237371	3R_17237371_SNP [dm3] 3R_21411649_SNP [dm6]	A	C	6.170e^-5	0.934	INTRON lbl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2398737	X_2398737_SNP [dm3] X_2504704_SNP [dm6]	G	A	6.194e^-5	0.934	INTRON trol
3L	9036638	3L_9036638_SNP [dm3] 3L_9043538_SNP [dm6]	T	C	6.288e^-5	0.934	SYNONYMOUS_CODING Doc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	630999	3L_630999_SNP [dm3] 3L_630999_SNP [dm6]	G	A	6.289e^-5	0.934	EXON CR43334	regulatory region REDfly_CRMs
3R	27699003	3R_27699003_INS [dm3] 3R_31873281_INS [dm6]	A	AA	6.379e^-5	0.934	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666984	3L_12666984_SNP [dm3] 3L_12673884_SNP [dm6]	G	T	6.393e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	25170098	3R_25170098_SNP [dm3] 3R_29344376_SNP [dm6]	T	A	6.521e^-5	0.934	INTERGENIC
X	8217373	X_8217373_SNP [dm3] X_8323340_SNP [dm6]	G	C	6.528e^-5	0.934	INTRON nAChRalpha3
3L	14541160	3L_14541160_SNP [dm3] 3L_14548060_SNP [dm6]	T	C	6.592e^-5	0.934	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	628989	3L_628989_SNP [dm3] 3L_628989_SNP [dm6]	T	A	6.606e^-5	0.934	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	9084287	X_9084287_SNP [dm3] X_9190254_SNP [dm6]	T	C	6.668e^-5	0.934	DOWNSTREAM mei-P26 INTRON CG12115
3R	15487159	3R_15487159_SNP [dm3] 3R_19661437_SNP [dm6]	C	A	6.745e^-5	0.934	INTRON ort
2L	4572173	2L_4572173_SNP [dm3] 2L_4572173_SNP [dm6]	T	G	6.810e^-5	0.934	INTRON dp	TF binding site mE1_TFBS_cad
2L	7521814	2L_7521814_SNP [dm3] 2L_7521814_SNP [dm6]	C	A	6.845e^-5	0.934	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	15668189	X_15668189_SNP [dm3] X_15774156_SNP [dm6]	G	A	6.854e^-5	0.934	INTRON CG43672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16934242	X_16934242_SNP [dm3] X_17040209_SNP [dm6]	A	C	7.003e^-5	0.934	INTRON CG45002
2R	7182193	2R_7182193_SNP [dm3] 2R_11294688_SNP [dm6]	T	G	7.015e^-5	0.934	SYNONYMOUS_CODING CG42336 UPSTREAM CG18336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4915186	3R_4915186_SNP [dm3] 3R_9089464_SNP [dm6]	G	T	7.066e^-5	0.934	INTRON pum
3R	12596389	3R_12596389_SNP [dm3] 3R_16770667_SNP [dm6]	G	A	7.073e^-5	0.934	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8926568	3L_8926568_SNP [dm3] 3L_8933468_SNP [dm6]	A	G	7.086e^-5	0.934	SYNONYMOUS_CODING CG43783
2R	4195164	2R_4195164_SNP [dm3] 2R_8307659_SNP [dm6]	T	C	7.103e^-5	0.934	INTERGENIC
3R	20299381	3R_20299381_SNP [dm3] 3R_24473659_SNP [dm6]	T	A	7.116e^-5	0.934	INTERGENIC
2L	20419760	2L_20419760_SNP [dm3] 2L_20419760_SNP [dm6]	T	C	7.316e^-5	0.934	UPSTREAM snoRNA:Psi18S-525f & 1 other DOWNSTREAM snoRNA:Psi18S-525b & 6 others INTRON Arpc2
X	10067889	X_10067889_SNP [dm3] X_10173856_SNP [dm6]	G	T	7.316e^-5	0.934	INTRON CG43902 & 1 other
3R	15405293	3R_15405293_SNP [dm3] 3R_19579571_SNP [dm6]	A	G	7.520e^-5	0.934	INTRON Dys
2L	6456935	2L_6456935_SNP [dm3] 2L_6456935_SNP [dm6]	C	T	7.548e^-5	0.934	SYNONYMOUS_CODING frj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	2438803	2R_2438803_SNP [dm3] 2R_6551298_SNP [dm6]	T	A	7.679e^-5	0.934	INTRON jing
2L	20250625	2L_20250625_SNP [dm3] 2L_20250625_SNP [dm6]	T	C	7.722e^-5	0.934	UPSTREAM CR40172 INTERGENIC
2L	21756296	2L_21756296_SNP [dm3] 2L_21756296_SNP [dm6]	T	G	7.742e^-5	0.934	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	13758881	2L_13758881_SNP [dm3] 2L_13758881_SNP [dm6]	G	A	7.767e^-5	0.934	INTRON TM9SF4
2L	5213346	2L_5213346_SNP [dm3] 2L_5213346_SNP [dm6]	G	T	7.768e^-5	0.934	DOWNSTREAM Cyp28d1 INTRON CG7742	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22125219	2L_22125219_DEL [dm3] 2L_22125219_DEL [dm6]	ATATG	A	7.778e^-5	0.934	UTR_3_PRIME CycK & 1 other DOWNSTREAM CG3651	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14673053	3R_14673053_SNP [dm3] 3R_18847331_SNP [dm6]	A	G	7.821e^-5	0.934	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8217335	X_8217335_SNP [dm3] X_8323302_SNP [dm6]	T	C	7.851e^-5	0.934	INTRON nAChRalpha3
3L	5781204	3L_5781204_SNP [dm3] 3L_5788104_SNP [dm6]	A	T	7.854e^-5	0.934	INTERGENIC
2L	20591700	2L_20591700_DEL [dm3] 2L_20591700_DEL [dm6]	AA	A	7.910e^-5	0.934	INTRON CR44909
3R	17237376	3R_17237376_SNP [dm3] 3R_21411654_SNP [dm6]	A	G	8.028e^-5	0.934	INTRON lbl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20012275	3R_20012275_INS [dm3] 3R_24186553_INS [dm6]	C	CGTTAAAGTC	8.056e^-5	0.934	INTRON CHORD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1279347	3L_1279347_SNP [dm3] 3L_1279347_SNP [dm6]	C	G	8.227e^-5	0.934	INTRON CG32333
3L	12667016	3L_12667016_SNP [dm3] 3L_12673916_SNP [dm6]	T	C	8.249e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
4	664791	4_664791_SNP [dm3] 4_644165_SNP [dm6]	G	A	8.292e^-5	0.934	INTRON CG9935
3L	8926559	3L_8926559_SNP [dm3] 3L_8933459_SNP [dm6]	A	C	8.316e^-5	0.934	SYNONYMOUS_CODING CG43783
2L	8929090	2L_8929090_SNP [dm3] 2L_8929090_SNP [dm6]	A	G	8.328e^-5	0.934	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad
2L	20259695	2L_20259695_SNP [dm3] 2L_20259695_SNP [dm6]	G	T	8.341e^-5	0.934	INTERGENIC
X	11024053	X_11024053_SNP [dm3] X_11130020_SNP [dm6]	C	T	8.378e^-5	0.934	UTR_3_PRIME Klp10A UPSTREAM Gtp-bp DOWNSTREAM Klp10A	regulatory region REDfly_CRMs
4	664875	4_664875_SNP [dm3] 4_644249_SNP [dm6]	T	C	8.516e^-5	0.934	INTRON CG9935	transposable element FlyBase
X	16157297	X_16157297_SNP [dm3] X_16263264_SNP [dm6]	G	A	8.578e^-5	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18247843	2R_18247843_SNP [dm3] 2R_22360338_SNP [dm6]	C	T	8.598e^-5	0.934	INTRON Liprin-gamma
3R	27697565	3R_27697565_SNP [dm3] 3R_31871843_SNP [dm6]	C	T	8.648e^-5	0.934	INTRON heph	TF binding site BDTNP1_TFBS_da
3R	27745495	3R_27745495_SNP [dm3] 3R_31919773_SNP [dm6]	C	T	8.648e^-5	0.934	INTRON heph
3R	27764031	3R_27764031_SNP [dm3] 3R_31938309_SNP [dm6]	C	G	8.648e^-5	0.934	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27792575	3R_27792575_SNP [dm3] 3R_31966853_SNP [dm6]	A	T	8.648e^-5	0.934	INTRON heph	TF binding site BDTNP1_TFBS_prd
2L	5858622	2L_5858622_SNP [dm3] 2L_5858622_SNP [dm6]	G	C	8.720e^-5	0.934	INTERGENIC
X	9416211	X_9416211_SNP [dm3] X_9522178_SNP [dm6]	A	T	8.913e^-5	0.934	INTRON CG32700	TF binding site BDTNP1_TFBS_dl
X	11368242	X_11368242_SNP [dm3] X_11474209_SNP [dm6]	A	G	9.157e^-5	0.934	SYNONYMOUS_CODING CG43155
3R	14672743	3R_14672743_SNP [dm3] 3R_18847021_SNP [dm6]	T	A	9.169e^-5	0.934	INTRON CG18208
3L	8921690	3L_8921690_SNP [dm3] 3L_8928590_SNP [dm6]	G	A	9.194e^-5	0.934	INTRON Tsp66E
X	8434888	X_8434888_SNP [dm3] X_8540855_SNP [dm6]	G	C	9.292e^-5	0.934	INTRON Nrg
3L	13024031	3L_13024031_SNP [dm3] 3L_13030931_SNP [dm6]	G	A	9.352e^-5	0.934	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	12061699	3L_12061699_SNP [dm3] 3L_12068599_SNP [dm6]	A	G	9.366e^-5	0.934	SYNONYMOUS_CODING Sema-5c
X	2276809	X_2276809_SNP [dm3] X_2382776_SNP [dm6]	C	T	9.381e^-5	0.934	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5212910	2L_5212910_SNP [dm3] 2L_5212910_SNP [dm6]	T	G	9.521e^-5	0.934	SYNONYMOUS_CODING CG7742 DOWNSTREAM Cyp28d1	TF binding site mE1_TFBS_cad
X	22077246	X_22077246_SNP [dm3] X_22675410_SNP [dm6]	G	A	9.649e^-5	0.934	INTRON CR44997
2R	16512476	2R_16512476_SNP [dm3] 2R_20624971_SNP [dm6]	G	C	9.921e^-5	0.934	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	20437281	2L_20437281_SNP [dm3] 2L_20437281_SNP [dm6]	C	T	9.931e^-5	0.934	INTRON CG31688 EXON CR43607	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11953728	2L_11953728_SNP [dm3] 2L_11953728_SNP [dm6]	T	A	9.932e^-5	0.934	UPSTREAM bft EXON CR43314
3R	19564626	3R_19564626_SNP [dm3] 3R_23738904_SNP [dm6]	C	G	9.969e^-5	0.934	INTRON Hmgcr
X	21875154	X_21875154_SNP [dm3] X_22473318_SNP [dm6]	A	T	9.997e^-5	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	8922837	3L_8922837_SNP [dm3] 3L_8929737_SNP [dm6]	A	G	1.001e^-4	0.934	INTRON Tsp66E
2R	12794247	2R_12794247_SNP [dm3] 2R_16906742_SNP [dm6]	T	C	1.009e^-4	0.934	INTERGENIC
2R	18165532	2R_18165532_SNP [dm3] 2R_22278027_SNP [dm6]	G	A	1.012e^-4	0.934	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13259685	X_13259685_SNP [dm3] X_13365652_SNP [dm6]	C	T	1.014e^-4	0.934	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14128205	3L_14128205_DEL [dm3] 3L_14135105_DEL [dm6]	AAAGTT	A	1.016e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15004910	2L_15004910_INS [dm3] 2L_15004910_INS [dm6]	AT	CCTTCC	1.031e^-4	0.934	UPSTREAM dyn-p25 INTERGENIC	transposable element FlyBase
3R	20333624	3R_20333624_SNP [dm3] 3R_24507902_SNP [dm6]	A	T	1.033e^-4	0.934	INTERGENIC
3R	13660817	3R_13660817_SNP [dm3] 3R_17835095_SNP [dm6]	A	T	1.035e^-4	0.934	INTRON tinc
3L	12061769	3L_12061769_SNP [dm3] 3L_12068669_SNP [dm6]	C	G	1.037e^-4	0.934	INTRON Sema-5c
X	8714261	X_8714261_SNP [dm3] X_8820228_SNP [dm6]	T	C	1.040e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20419476	2L_20419476_SNP [dm3] 2L_20419476_SNP [dm6]	T	A	1.050e^-4	0.934	UPSTREAM snoRNA:Psi18S-640d & 2 others DOWNSTREAM snoRNA:Psi18S-525a & 6 others INTRON Arpc2 EXON snoRNA:Psi18S-525e
X	10068028	X_10068028_SNP [dm3] X_10173995_SNP [dm6]	T	G	1.051e^-4	0.934	INTRON CG43902 & 1 other
X	8519192	X_8519192_SNP [dm3] X_8625159_SNP [dm6]	A	G	1.062e^-4	0.934	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	18447184	X_18447184_SNP [dm3] X_18553151_SNP [dm6]	C	T	1.065e^-4	0.934	INTRON Bx	TF binding site mE1_TFBS_HSA
3R	5913663	3R_5913663_SNP [dm3] 3R_10087941_SNP [dm6]	A	T	1.066e^-4	0.934	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11879184	2L_11879184_SNP [dm3] 2L_11879184_SNP [dm6]	C	T	1.068e^-4	0.934	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10067895	X_10067895_SNP [dm3] X_10173862_SNP [dm6]	A	G	1.071e^-4	0.934	INTRON CG43902 & 1 other
X	15530431	X_15530431_SNP [dm3] X_15636398_SNP [dm6]	T	G	1.072e^-4	0.934	EXON CR44423
X	2310627	X_2310627_SNP [dm3] X_2416594_SNP [dm6]	T	C	1.073e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2R	6487160	2R_6487160_SNP [dm3] 2R_10599655_SNP [dm6]	T	A	1.078e^-4	0.934	INTRON psq
X	14887616	X_14887616_SNP [dm3] X_14993583_SNP [dm6]	T	C	1.084e^-4	0.934	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	767658	4_767658_INS [dm3] 4_747032_INS [dm6]	AT	CGA	1.088e^-4	0.934	INTRON bt
3R	20299422	3R_20299422_SNP [dm3] 3R_24473700_SNP [dm6]	G	A	1.098e^-4	0.934	INTERGENIC
2L	7104284	2L_7104284_SNP [dm3] 2L_7104284_SNP [dm6]	C	T	1.099e^-4	0.934	INTRON Pvf3
4	665826	4_665826_SNP [dm3] 4_645200_SNP [dm6]	G	T	1.104e^-4	0.934	INTRON CG9935	transposable element FlyBase
2L	6687625	2L_6687625_SNP [dm3] 2L_6687625_SNP [dm6]	C	T	1.107e^-4	0.934	SYNONYMOUS_CODING Tsp UPSTREAM CG11327	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9361675	2L_9361675_SNP [dm3] 2L_9361675_SNP [dm6]	G	C	1.116e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15668151	X_15668151_SNP [dm3] X_15774118_SNP [dm6]	T	C	1.121e^-4	0.934	INTRON CG43672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	720609	4_720609_SNP [dm3] 4_699983_SNP [dm6]	T	A	1.127e^-4	0.934	INTRON ey	regulatory region REDfly_CRMs
X	21875049	X_21875049_SNP [dm3] X_22473213_SNP [dm6]	G	T	1.129e^-4	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	1327317	3L_1327317_SNP [dm3] 3L_1327317_SNP [dm6]	T	C	1.132e^-4	0.934	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9592718	2L_9592718_SNP [dm3] 2L_9592718_SNP [dm6]	C	A	1.137e^-4	0.934	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7592720	3R_7592720_SNP [dm3] 3R_11766998_SNP [dm6]	G	T	1.147e^-4	0.934	UTR_3_PRIME l_3_neo38
X	15843457	X_15843457_SNP [dm3] X_15949424_SNP [dm6]	G	T	1.157e^-4	0.934	INTRON mmd	TF binding site BDTNP1_TFBS_dl
3L	20874849	3L_20874849_SNP [dm3] 3L_20881749_SNP [dm6]	C	A	1.157e^-4	0.934	UTR_5_PRIME CG32432
2L	1517711	2L_1517711_SNP [dm3] 2L_1517711_SNP [dm6]	G	T	1.157e^-4	0.934	UTR_3_PRIME halo UPSTREAM CG18132	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8970692	2L_8970692_SNP [dm3] 2L_8970692_SNP [dm6]	A	T	1.177e^-4	0.934	UTR_3_PRIME CG9541 DOWNSTREAM CG18088	TF binding site BDTNP1_TFBS_twi
3R	19922331	3R_19922331_SNP [dm3] 3R_24096609_SNP [dm6]	G	A	1.180e^-4	0.934	INTRON 4EHP
3L	14128224	3L_14128224_SNP [dm3] 3L_14135124_SNP [dm6]	A	T	1.180e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16380266	2L_16380266_SNP [dm3] 2L_16380266_SNP [dm6]	T	C	1.185e^-4	0.934	INTERGENIC
2L	5212970	2L_5212970_SNP [dm3] 2L_5212970_SNP [dm6]	T	G	1.187e^-4	0.934	SYNONYMOUS_CODING CG7742 DOWNSTREAM Cyp28d1	TF binding site mE1_TFBS_cad
X	15865429	X_15865429_SNP [dm3] X_15971396_SNP [dm6]	A	T	1.200e^-4	0.934	INTRON mmd
3R	25330070	3R_25330070_SNP [dm3] 3R_29504348_SNP [dm6]	A	C	1.200e^-4	0.934	UPSTREAM Trc8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7151109	3L_7151109_SNP [dm3] 3L_7158009_SNP [dm6]	A	G	1.204e^-4	0.934	UPSTREAM corn & 1 other INTERGENIC
3R	19618900	3R_19618900_SNP [dm3] 3R_23793178_SNP [dm6]	A	G	1.204e^-4	0.934	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
X	10747822	X_10747822_SNP [dm3] X_10853789_SNP [dm6]	G	T	1.209e^-4	0.934	SYNONYMOUS_CODING feo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	20634871	3R_20634871_SNP [dm3] 3R_24809149_SNP [dm6]	G	T	1.210e^-4	0.934	SYNONYMOUS_CODING CG5807 DOWNSTREAM CG6980
2L	12416877	2L_12416877_SNP [dm3] 2L_12416877_SNP [dm6]	T	A	1.213e^-4	0.934	INTRON vir-1
2L	15623892	2L_15623892_SNP [dm3] 2L_15623892_SNP [dm6]	T	A	1.214e^-4	0.934	UPSTREAM Or35a INTERGENIC
2L	1517758	2L_1517758_SNP [dm3] 2L_1517758_SNP [dm6]	G	T	1.217e^-4	0.934	NON_SYNONYMOUS_CODING halo UPSTREAM CG18132	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23628855	3R_23628855_INS [dm3] 3R_27803133_INS [dm6]	G	CT	1.221e^-4	0.934	INTRON CG34353
3R	25170037	3R_25170037_SNP [dm3] 3R_29344315_SNP [dm6]	C	T	1.231e^-4	0.934	INTERGENIC
X	9080790	X_9080790_SNP [dm3] X_9186757_SNP [dm6]	A	C	1.234e^-4	0.934	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4558306	2R_4558306_SNP [dm3] 2R_8670801_SNP [dm6]	G	A	1.238e^-4	0.934	UTR_5_PRIME Acsl INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5781121	3L_5781121_SNP [dm3] 3L_5788021_SNP [dm6]	G	C	1.242e^-4	0.934	INTERGENIC
X	21875191	X_21875191_SNP [dm3] X_22473355_SNP [dm6]	T	A	1.246e^-4	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	21874516	X_21874516_MNP [dm3] X_22472680_MNP [dm6]	CAC	TCT	1.255e^-4	0.934	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6256245	3L_6256245_SNP [dm3] 3L_6263145_SNP [dm6]	C	T	1.266e^-4	0.934	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5772782	2L_5772782_SNP [dm3] 2L_5772782_SNP [dm6]	G	T	1.279e^-4	0.934	UPSTREAM CG9171 INTRON CG9171
X	2278084	X_2278084_SNP [dm3] X_2384051_SNP [dm6]	G	C	1.283e^-4	0.934	INTRON PsGEF	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26233488	3R_26233488_SNP [dm3] 3R_30407766_SNP [dm6]	C	A	1.285e^-4	0.934	INTERGENIC
3L	1191637	3L_1191637_SNP [dm3] 3L_1191637_SNP [dm6]	A	C	1.300e^-4	0.934	INTRON Trh	TF binding site mE1_TFBS_cad
3L	5775647	3L_5775647_SNP [dm3] 3L_5782547_SNP [dm6]	T	A	1.301e^-4	0.934	DOWNSTREAM Cralbp INTRON Pmi & 1 other
3L	1564803	3L_1564803_SNP [dm3] 3L_1564803_SNP [dm6]	T	A	1.302e^-4	0.934	UPSTREAM CG12003 INTRON CG7879
3R	20299132	3R_20299132_SNP [dm3] 3R_24473410_SNP [dm6]	A	C	1.334e^-4	0.934	INTERGENIC
2R	7182253	2R_7182253_SNP [dm3] 2R_11294748_SNP [dm6]	T	C	1.340e^-4	0.934	SYNONYMOUS_CODING CG42336 UPSTREAM CG18336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2079325	2R_2079325_SNP [dm3] 2R_6191820_SNP [dm6]	T	C	1.350e^-4	0.934	INTRON Ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12813238	3R_12813238_SNP [dm3] 3R_16987516_SNP [dm6]	G	T	1.353e^-4	0.934	UPSTREAM CG18622 INTRON CG18622
3R	4915198	3R_4915198_SNP [dm3] 3R_9089476_SNP [dm6]	G	A	1.363e^-4	0.934	INTRON pum
3R	20698930	3R_20698930_SNP [dm3] 3R_24873208_SNP [dm6]	C	T	1.366e^-4	0.934	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2L	11879090	2L_11879090_SNP [dm3] 2L_11879090_SNP [dm6]	A	C	1.367e^-4	0.934	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10067903	X_10067903_SNP [dm3] X_10173870_SNP [dm6]	C	T	1.369e^-4	0.934	INTRON CG43902 & 1 other
2L	5856836	2L_5856836_SNP [dm3] 2L_5856836_SNP [dm6]	C	G	1.371e^-4	0.934	DOWNSTREAM TrissinR INTERGENIC
2L	12412777	2L_12412777_SNP [dm3] 2L_12412777_SNP [dm6]	C	T	1.373e^-4	0.934	INTRON vir-1
2L	16293998	2L_16293998_DEL [dm3] 2L_16293998_DEL [dm6]	AAACATTTCTTCA...	A	1.374e^-4	0.934	UPSTREAM CG13258 & 2 others INTERGENIC
3L	13024191	3L_13024191_SNP [dm3] 3L_13031091_SNP [dm6]	G	T	1.375e^-4	0.934	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	20979911	3L_20979911_DEL [dm3] 3L_20986811_DEL [dm6]	CGACACGCGGCCGACGAGAG...	C	1.377e^-4	0.934	INTERGENIC
3R	20866055	3R_20866055_SNP [dm3] 3R_25040333_SNP [dm6]	G	A	1.388e^-4	0.934	SYNONYMOUS_STOP bai DOWNSTREAM 5PtaseI	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	21875146	X_21875146_SNP [dm3] X_22473310_SNP [dm6]	G	T	1.389e^-4	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	9084194	X_9084194_SNP [dm3] X_9190161_SNP [dm6]	A	T	1.390e^-4	0.934	DOWNSTREAM mei-P26 INTRON CG12115
X	9084280	X_9084280_SNP [dm3] X_9190247_SNP [dm6]	T	C	1.390e^-4	0.934	DOWNSTREAM mei-P26 INTRON CG12115
3R	12812933	3R_12812933_SNP [dm3] 3R_16987211_SNP [dm6]	T	A	1.392e^-4	0.934	UPSTREAM CG18622 INTRON CG18622
2R	5409641	2R_5409641_SNP [dm3] 2R_9522136_SNP [dm6]	C	A	1.398e^-4	0.934	INTRON brp
X	11779656	X_11779656_SNP [dm3] X_11885623_SNP [dm6]	G	T	1.406e^-4	0.934	UPSTREAM CG10353 INTRON CG10353
3R	17237369	3R_17237369_SNP [dm3] 3R_21411647_SNP [dm6]	C	G	1.412e^-4	0.934	INTRON lbl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16897589	3L_16897589_SNP [dm3] 3L_16904489_SNP [dm6]	A	T	1.412e^-4	0.934	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	5689758	2L_5689758_SNP [dm3] 2L_5689758_SNP [dm6]	T	A	1.413e^-4	0.934	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
X	14888158	X_14888158_SNP [dm3] X_14994125_SNP [dm6]	A	G	1.414e^-4	0.934	INTRON eag	TF binding site mE1_TFBS_HSA
4	642540	4_642540_SNP [dm3] 4_621914_SNP [dm6]	C	A	1.417e^-4	0.934	DOWNSTREAM Eph INTRON Eph
3L	11274147	3L_11274147_DEL [dm3] 3L_11281047_DEL [dm6]	TAC	T	1.428e^-4	0.934	INTERGENIC
3R	13660897	3R_13660897_SNP [dm3] 3R_17835175_SNP [dm6]	A	T	1.431e^-4	0.934	INTRON tinc
X	9222929	X_9222929_SNP [dm3] X_9328896_SNP [dm6]	G	C	1.431e^-4	0.934	DOWNSTREAM CG34450 INTRON CG34449
3R	22761259	3R_22761259_SNP [dm3] 3R_26935537_SNP [dm6]	G	C	1.444e^-4	0.934	INTRON sda
X	5765589	X_5765589_SNP [dm3] X_5871556_SNP [dm6]	C	T	1.447e^-4	0.934	SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20691241	3R_20691241_SNP [dm3] 3R_24865519_SNP [dm6]	C	T	1.448e^-4	0.934	SYNONYMOUS_CODING Ela UPSTREAM CG13641	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20598595	3R_20598595_SNP [dm3] 3R_24772873_SNP [dm6]	G	A	1.450e^-4	0.934	INTRON CG42331
2R	12364934	2R_12364934_SNP [dm3] 2R_16477429_SNP [dm6]	C	A	1.452e^-4	0.934	INTERGENIC
3R	20598598	3R_20598598_SNP [dm3] 3R_24772876_SNP [dm6]	C	G	1.457e^-4	0.934	INTRON CG42331
3L	6236448	3L_6236448_SNP [dm3] 3L_6243348_SNP [dm6]	G	T	1.458e^-4	0.934	INTRON Mdr65
2R	18722745	2R_18722745_SNP [dm3] 2R_22835222_SNP [dm6]	T	C	1.466e^-4	0.934	NON_SYNONYMOUS_CODING CG12490 DOWNSTREAM CG30265
3R	13660816	3R_13660816_SNP [dm3] 3R_17835094_SNP [dm6]	A	T	1.472e^-4	0.934	INTRON tinc
3R	20913654	3R_20913654_SNP [dm3] 3R_25087932_SNP [dm6]	T	C	1.478e^-4	0.934	INTERGENIC
X	9083931	X_9083931_SNP [dm3] X_9189898_SNP [dm6]	A	G	1.481e^-4	0.934	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
3L	7743749	3L_7743749_SNP [dm3] 3L_7750649_SNP [dm6]	A	G	1.487e^-4	0.934	DOWNSTREAM CG13685 INTRON CG32373
3R	16387531	3R_16387531_SNP [dm3] 3R_20561809_SNP [dm6]	T	C	1.501e^-4	0.934	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1279208	3L_1279208_SNP [dm3] 3L_1279208_SNP [dm6]	A	T	1.511e^-4	0.934	INTRON CG32333
X	4981101	X_4981101_SNP [dm3] X_5087068_SNP [dm6]	T	C	1.515e^-4	0.934	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	1206831	3L_1206831_SNP [dm3] 3L_1206831_SNP [dm6]	G	T	1.518e^-4	0.934	UPSTREAM LysB INTRON mwh	TF binding site mE1_TFBS_cad
2R	2466889	2R_2466889_SNP [dm3] 2R_6579384_SNP [dm6]	C	T	1.520e^-4	0.934	INTRON jing	TF binding site BDTNP1_TFBS_dl
X	8434910	X_8434910_SNP [dm3] X_8540877_SNP [dm6]	T	C	1.523e^-4	0.934	INTRON Nrg
2L	19723249	2L_19723249_SNP [dm3] 2L_19723249_SNP [dm6]	A	C	1.531e^-4	0.934	INTRON Lar
X	2406837	X_2406837_SNP [dm3] X_2512804_SNP [dm6]	T	C	1.545e^-4	0.934	INTRON trol
2L	13271093	2L_13271093_SNP [dm3] 2L_13271093_SNP [dm6]	T	A	1.547e^-4	0.934	INTRON CG44085
3R	10950017	3R_10950017_SNP [dm3] 3R_15124295_SNP [dm6]	G	T	1.553e^-4	0.934	INTRON CG42788
2R	18722251	2R_18722251_SNP [dm3] 2R_22834728_SNP [dm6]	A	G	1.554e^-4	0.934	DOWNSTREAM CG30265 INTRON CG12490
3L	14128198	3L_14128198_SNP [dm3] 3L_14135098_SNP [dm6]	A	G	1.555e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5689761	2L_5689761_SNP [dm3] 2L_5689761_SNP [dm6]	T	A	1.559e^-4	0.934	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
2L	8881951	2L_8881951_SNP [dm3] 2L_8881951_SNP [dm6]	T	C	1.565e^-4	0.934	INTERGENIC
3L	7263317	3L_7263317_SNP [dm3] 3L_7270217_SNP [dm6]	G	A	1.577e^-4	0.934	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6880836	X_6880836_SNP [dm3] X_6986803_SNP [dm6]	G	A	1.578e^-4	0.934	SYNONYMOUS_CODING bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	4390149	X_4390149_SNP [dm3] X_4496116_SNP [dm6]	T	A	1.580e^-4	0.934	INTRON CR32773
2L	4450632	2L_4450632_SNP [dm3] 2L_4450632_SNP [dm6]	C	A	1.587e^-4	0.934	INTRON CG15439
2R	10344627	2R_10344627_SNP [dm3] 2R_14457122_SNP [dm6]	T	C	1.591e^-4	0.934	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
2R	10432348	2R_10432348_SNP [dm3] 2R_14544843_SNP [dm6]	G	A	1.592e^-4	0.934	NON_SYNONYMOUS_CODING CG30076 INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13309049	3L_13309049_SNP [dm3] 3L_13315949_SNP [dm6]	C	T	1.593e^-4	0.934	INTERGENIC
3R	11885042	3R_11885042_SNP [dm3] 3R_16059320_SNP [dm6]	T	C	1.593e^-4	0.934	SYNONYMOUS_CODING msps
3R	14672986	3R_14672986_SNP [dm3] 3R_18847264_SNP [dm6]	G	T	1.596e^-4	0.934	INTRON CG18208
2R	16512501	2R_16512501_SNP [dm3] 2R_20624996_SNP [dm6]	A	C	1.596e^-4	0.934	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
2L	9719986	2L_9719986_DEL [dm3] 2L_9719986_DEL [dm6]	AA	A	1.598e^-4	0.934	INTRON Nckx30C
X	6149005	X_6149005_SNP [dm3] X_6254972_SNP [dm6]	G	A	1.600e^-4	0.934	UPSTREAM Spx INTRON Rbcn-3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20348777	2L_20348777_SNP [dm3] 2L_20348777_SNP [dm6]	G	C	1.603e^-4	0.934	SYNONYMOUS_CODING La DOWNSTREAM spir	TF binding site mE1_TFBS_cad
3L	17644782	3L_17644782_SNP [dm3] 3L_17651682_SNP [dm6]	A	G	1.613e^-4	0.934	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6798978	3L_6798978_INS [dm3] 3L_6805878_INS [dm6]	T	TT	1.615e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs
X	16314676	X_16314676_SNP [dm3] X_16420643_SNP [dm6]	T	G	1.622e^-4	0.934	UPSTREAM AnxB11 INTRON AnxB11	TF binding site mE1_TFBS_zfh1
2L	8445762	2L_8445762_SNP [dm3] 2L_8445762_SNP [dm6]	G	A	1.648e^-4	0.934	UTR_3_PRIME CG31897 DOWNSTREAM U26
2L	19810257	2L_19810257_SNP [dm3] 2L_19810257_SNP [dm6]	G	A	1.668e^-4	0.934	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8936520	2L_8936520_SNP [dm3] 2L_8936520_SNP [dm6]	A	T	1.673e^-4	0.934	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8936521	2L_8936521_SNP [dm3] 2L_8936521_SNP [dm6]	A	T	1.673e^-4	0.934	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3476260	X_3476260_SNP [dm3] X_3582227_SNP [dm6]	C	T	1.673e^-4	0.934	INTRON AstA-R1
X	15826450	X_15826450_SNP [dm3] X_15932417_SNP [dm6]	A	C	1.678e^-4	0.934	SYNONYMOUS_CODING Ranbp16
X	13378660	X_13378660_SNP [dm3] X_13484627_SNP [dm6]	A	T	1.681e^-4	0.934	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5318486	2R_5318486_SNP [dm3] 2R_9430981_SNP [dm6]	T	G	1.687e^-4	0.934	INTRON Pdk
2L	12416881	2L_12416881_SNP [dm3] 2L_12416881_SNP [dm6]	G	C	1.689e^-4	0.934	INTRON vir-1
2L	13756906	2L_13756906_SNP [dm3] 2L_13756906_SNP [dm6]	G	C	1.694e^-4	0.934	DOWNSTREAM CR44846 INTRON TM9SF4
2L	8888789	2L_8888789_SNP [dm3] 2L_8888789_SNP [dm6]	A	G	1.694e^-4	0.934	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	8967641	2L_8967641_SNP [dm3] 2L_8967641_SNP [dm6]	G	A	1.705e^-4	0.934	SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
3R	18533350	3R_18533350_SNP [dm3] 3R_22707628_SNP [dm6]	A	G	1.733e^-4	0.934	UPSTREAM CG13842 DOWNSTREAM CG4907 INTERGENIC
X	8427956	X_8427956_SNP [dm3] X_8533923_SNP [dm6]	G	C	1.766e^-4	0.934	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20271185	2L_20271185_SNP [dm3] 2L_20271185_SNP [dm6]	C	T	1.766e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_inv
X	10778066	X_10778066_SNP [dm3] X_10884033_SNP [dm6]	A	G	1.771e^-4	0.934	INTRON Ork1
X	21875088	X_21875088_SNP [dm3] X_22473252_SNP [dm6]	A	G	1.771e^-4	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	5409640	2R_5409640_SNP [dm3] 2R_9522135_SNP [dm6]	T	C	1.773e^-4	0.934	INTRON brp
3R	23822394	3R_23822394_SNP [dm3] 3R_27996672_SNP [dm6]	C	T	1.773e^-4	0.934	INTERGENIC
2L	11879097	2L_11879097_SNP [dm3] 2L_11879097_SNP [dm6]	A	T	1.776e^-4	0.934	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6236364	3L_6236364_SNP [dm3] 3L_6243264_SNP [dm6]	G	A	1.781e^-4	0.934	SYNONYMOUS_CODING Mdr65
2R	10344764	2R_10344764_INS [dm3] 2R_14457259_INS [dm6]	G	GGG	1.781e^-4	0.934	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
4	629315	4_629315_SNP [dm3] 4_608689_SNP [dm6]	A	T	1.782e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7743741	3L_7743741_INS [dm3] 3L_7750641_INS [dm6]	T	TGT	1.785e^-4	0.934	DOWNSTREAM CG13685 INTRON CG32373
3R	15917368	3R_15917368_SNP [dm3] 3R_20091646_SNP [dm6]	T	G	1.785e^-4	0.934	INTERGENIC
2R	5409637	2R_5409637_SNP [dm3] 2R_9522132_SNP [dm6]	G	C	1.786e^-4	0.934	INTRON brp
3R	25206035	3R_25206035_INS [dm3] 3R_29380313_INS [dm6]	A	AG	1.789e^-4	0.934	INTRON Ptp99A
3L	5776663	3L_5776663_SNP [dm3] 3L_5783563_SNP [dm6]	C	T	1.803e^-4	0.934	NON_SYNONYMOUS_CODING Cralbp UTR_3_PRIME Pmi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8928508	3L_8928508_SNP [dm3] 3L_8935408_SNP [dm6]	C	T	1.806e^-4	0.934	SYNONYMOUS_CODING CG43783
2L	8869684	2L_8869684_SNP [dm3] 2L_8869684_SNP [dm6]	G	A	1.808e^-4	0.934	DOWNSTREAM CR44414 INTERGENIC
3R	22979475	3R_22979475_SNP [dm3] 3R_27153753_SNP [dm6]	T	G	1.819e^-4	0.934	INTRON Men-b
2L	8469622	2L_8469622_SNP [dm3] 2L_8469622_SNP [dm6]	A	G	1.819e^-4	0.934	INTRON d
2R	12500201	2R_12500201_SNP [dm3] 2R_16612696_SNP [dm6]	G	A	1.837e^-4	0.934	INTRON CG5065	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	20417342	2L_20417342_DEL [dm3] 2L_20417342_DEL [dm6]	TG	T	1.840e^-4	0.934	UTR_5_PRIME Arpc2 UPSTREAM CG10949	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14128182	3L_14128182_SNP [dm3] 3L_14135082_SNP [dm6]	G	A	1.840e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3085400	2L_3085400_SNP [dm3] 2L_3085400_SNP [dm6]	T	C	1.844e^-4	0.934	INTRON toc
3R	5972297	3R_5972297_SNP [dm3] 3R_10146575_SNP [dm6]	T	A	1.849e^-4	0.934	INTRON Invadolysin
3L	785944	3L_785944_SNP [dm3] 3L_785944_SNP [dm6]	T	G	1.852e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17622052	2R_17622052_SNP [dm3] 2R_21734547_SNP [dm6]	G	A	1.855e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	991478	2L_991478_SNP [dm3] 2L_991478_SNP [dm6]	G	C	1.856e^-4	0.934	UPSTREAM CR44801 INTERGENIC
3R	22985694	3R_22985694_SNP [dm3] 3R_27159972_SNP [dm6]	C	T	1.862e^-4	0.934	DOWNSTREAM grass INTERGENIC
3R	16369876	3R_16369876_SNP [dm3] 3R_20544154_SNP [dm6]	G	A	1.871e^-4	0.934	INTRON Stat92E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20912330	3R_20912330_SNP [dm3] 3R_25086608_SNP [dm6]	C	T	1.878e^-4	0.934	INTERGENIC
X	10430258	X_10430258_SNP [dm3] X_10536225_SNP [dm6]	A	G	1.882e^-4	0.934	INTRON spri
3R	15497993	3R_15497993_SNP [dm3] 3R_19672271_SNP [dm6]	T	A	1.893e^-4	0.934	DOWNSTREAM tRNA:V3b:92Ba INTRON Naam
3R	9571819	3R_9571819_SNP [dm3] 3R_13746097_SNP [dm6]	G	A	1.896e^-4	0.934	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20601127	3R_20601127_SNP [dm3] 3R_24775405_SNP [dm6]	G	A	1.907e^-4	0.934	INTRON CG42331
3L	13186686	3L_13186686_SNP [dm3] 3L_13193586_SNP [dm6]	T	G	1.908e^-4	0.934	INTERGENIC
3R	12812221	3R_12812221_SNP [dm3] 3R_16986499_SNP [dm6]	G	A	1.909e^-4	0.934	UPSTREAM CG18622 INTRON CG18622	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8959785	3L_8959785_SNP [dm3] 3L_8966685_SNP [dm6]	T	C	1.912e^-4	0.934	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19125838	3R_19125838_SNP [dm3] 3R_23300116_SNP [dm6]	C	G	1.913e^-4	0.934	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13378679	X_13378679_SNP [dm3] X_13484646_SNP [dm6]	G	T	1.915e^-4	0.934	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12812253	3R_12812253_SNP [dm3] 3R_16986531_SNP [dm6]	T	A	1.922e^-4	0.934	UPSTREAM CG18622 INTRON CG18622	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4449753	2L_4449753_SNP [dm3] 2L_4449753_SNP [dm6]	T	C	1.935e^-4	0.934	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
X	16316032	X_16316032_SNP [dm3] X_16421999_SNP [dm6]	G	A	1.935e^-4	0.934	START_GAINED AnxB11 UTR_5_PRIME AnxB11 UPSTREAM hang INTRON AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5850281	2L_5850281_SNP [dm3] 2L_5850281_SNP [dm6]	C	T	1.948e^-4	0.934	INTRON TrissinR
2L	4986096	2L_4986096_SNP [dm3] 2L_4986096_SNP [dm6]	C	T	1.949e^-4	0.934	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_cad
X	9083601	X_9083601_SNP [dm3] X_9189568_SNP [dm6]	A	G	1.954e^-4	0.934	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	2253101	X_2253101_SNP [dm3] X_2359068_SNP [dm6]	C	A	1.956e^-4	0.934	INTRON ptr
2R	18722741	2R_18722741_SNP [dm3] 2R_22835218_SNP [dm6]	T	C	1.963e^-4	0.934	SYNONYMOUS_CODING CG12490 DOWNSTREAM CG30265
2L	8445742	2L_8445742_SNP [dm3] 2L_8445742_SNP [dm6]	A	C	1.963e^-4	0.934	UTR_3_PRIME CG31897 DOWNSTREAM U26
2L	8936458	2L_8936458_SNP [dm3] 2L_8936458_SNP [dm6]	C	A	1.967e^-4	0.934	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14128239	3L_14128239_SNP [dm3] 3L_14135139_SNP [dm6]	A	T	1.982e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1278309	3L_1278309_SNP [dm3] 3L_1278309_SNP [dm6]	A	G	1.983e^-4	0.934	INTRON CG32333
2L	8445732	2L_8445732_SNP [dm3] 2L_8445732_SNP [dm6]	T	C	1.985e^-4	0.934	UTR_3_PRIME CG31897 DOWNSTREAM U26
X	1659174	X_1659174_SNP [dm3] X_1765141_SNP [dm6]	C	A	1.993e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2236667	X_2236667_SNP [dm3] X_2342634_SNP [dm6]	T	C	2.008e^-4	0.934	SYNONYMOUS_CODING phl	TF binding site BDTNP1_TFBS_dl
3L	14128242	3L_14128242_SNP [dm3] 3L_14135142_SNP [dm6]	T	C	2.033e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10622072	2L_10622072_SNP [dm3] 2L_10622072_SNP [dm6]	C	A	2.034e^-4	0.934	INTRON Trim9
3L	14128167	3L_14128167_SNP [dm3] 3L_14135067_SNP [dm6]	T	A	2.035e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12813295	3R_12813295_SNP [dm3] 3R_16987573_SNP [dm6]	A	T	2.035e^-4	0.934	UTR_5_PRIME CG18622 UPSTREAM CG18622	TF binding site mE1_TFBS_Trl
3L	13308763	3L_13308763_INS [dm3] 3L_13315663_INS [dm6]	A	AA	2.048e^-4	0.934	INTERGENIC
2L	14360528	2L_14360528_SNP [dm3] 2L_14360528_SNP [dm6]	G	C	2.050e^-4	0.934	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16897583	3L_16897583_SNP [dm3] 3L_16904483_SNP [dm6]	G	T	2.051e^-4	0.934	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	15004929	2L_15004929_SNP [dm3] 2L_15004929_SNP [dm6]	C	A	2.058e^-4	0.934	UPSTREAM dyn-p25 INTERGENIC	transposable element FlyBase
3L	18837004	3L_18837004_SNP [dm3] 3L_18843904_SNP [dm6]	G	C	2.058e^-4	0.934	INTRON Indy
3L	785908	3L_785908_SNP [dm3] 3L_785908_SNP [dm6]	A	G	2.059e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15425836	X_15425836_SNP [dm3] X_15531803_SNP [dm6]	T	A	2.063e^-4	0.934	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9411228	2R_9411228_SNP [dm3] 2R_13523723_SNP [dm6]	T	G	2.068e^-4	0.934	DOWNSTREAM CG13331 INTRON Vmat
3R	12234522	3R_12234522_SNP [dm3] 3R_16408800_SNP [dm6]	T	A	2.078e^-4	0.934	INTERGENIC
4	802640	4_802640_SNP [dm3] 4_782014_SNP [dm6]	G	A	2.086e^-4	0.934	INTRON MED26	transposable element FlyBase
X	13837361	X_13837361_SNP [dm3] X_13943328_SNP [dm6]	C	T	2.093e^-4	0.934	INTRON mamo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10434974	2R_10434974_SNP [dm3] 2R_14547469_SNP [dm6]	A	T	2.102e^-4	0.934	INTRON ttv
2L	20393398	2L_20393398_SNP [dm3] 2L_20393398_SNP [dm6]	A	T	2.106e^-4	0.934	INTRON CG10947
3L	13257736	3L_13257736_SNP [dm3] 3L_13264636_SNP [dm6]	A	C	2.118e^-4	0.934	INTRON caps
2L	13758707	2L_13758707_SNP [dm3] 2L_13758707_SNP [dm6]	G	A	2.119e^-4	0.934	INTRON TM9SF4
2R	2079392	2R_2079392_DEL [dm3] 2R_6191887_DEL [dm6]	AT	A	2.124e^-4	0.934	INTRON Ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19474938	3R_19474938_SNP [dm3] 3R_23649216_SNP [dm6]	A	G	2.125e^-4	0.934	INTRON CG31145
2L	4450628	2L_4450628_SNP [dm3] 2L_4450628_SNP [dm6]	C	G	2.126e^-4	0.934	INTRON CG15439
X	21361316	X_21361316_SNP [dm3] X_21490289_SNP [dm6]	G	A	2.127e^-4	0.934	INTERGENIC
3L	4573385	3L_4573385_SNP [dm3] 3L_4573385_SNP [dm6]	T	A	2.128e^-4	0.934	INTRON CG42540
3L	1505884	3L_1505884_SNP [dm3] 3L_1505884_SNP [dm6]	C	T	2.128e^-4	0.934	INTRON Psa & 1 other	TF binding site mE1_TFBS_cad
X	8217205	X_8217205_SNP [dm3] X_8323172_SNP [dm6]	C	T	2.131e^-4	0.934	INTRON nAChRalpha3
2L	20146910	2L_20146910_SNP [dm3] 2L_20146910_SNP [dm6]	T	C	2.134e^-4	0.934	INTERGENIC
X	10747813	X_10747813_SNP [dm3] X_10853780_SNP [dm6]	G	A	2.136e^-4	0.934	SYNONYMOUS_CODING feo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9983019	3R_9983019_SNP [dm3] 3R_14157297_SNP [dm6]	G	T	2.137e^-4	0.934	UTR_5_PRIME CG31533 DOWNSTREAM CG31327
2L	6445431	2L_6445431_SNP [dm3] 2L_6445431_SNP [dm6]	G	A	2.144e^-4	0.934	SYNONYMOUS_CODING CG9527
3L	6256631	3L_6256631_SNP [dm3] 3L_6263531_SNP [dm6]	A	G	2.145e^-4	0.934	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9237112	2L_9237112_SNP [dm3] 2L_9237112_SNP [dm6]	C	A	2.155e^-4	0.934	UPSTREAM tRNA:CR31885 INTRON tai
X	6882619	X_6882619_DEL [dm3] X_6988586_DEL [dm6]	TGAACTGATGGAAAATAATC...	T	2.171e^-4	0.934	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6271041	3L_6271041_SNP [dm3] 3L_6277941_SNP [dm6]	A	G	2.176e^-4	0.934	DOWNSTREAM CG43168 INTERGENIC
2L	12412567	2L_12412567_SNP [dm3] 2L_12412567_SNP [dm6]	C	T	2.179e^-4	0.934	INTRON vir-1
3R	11205613	3R_11205613_SNP [dm3] 3R_15379891_SNP [dm6]	A	T	2.180e^-4	0.934	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11779518	X_11779518_SNP [dm3] X_11885485_SNP [dm6]	G	T	2.190e^-4	0.934	UPSTREAM CG10353 INTRON CG10353
2R	9411230	2R_9411230_SNP [dm3] 2R_13523725_SNP [dm6]	T	C	2.197e^-4	0.934	DOWNSTREAM CG13331 INTRON Vmat
3L	7470624	3L_7470624_SNP [dm3] 3L_7477524_SNP [dm6]	G	T	2.200e^-4	0.934	INTERGENIC
3L	2905500	3L_2905500_SNP [dm3] 3L_2905500_SNP [dm6]	C	G	2.212e^-4	0.934	INTRON Shab
2R	17114706	2R_17114706_SNP [dm3] 2R_21227201_SNP [dm6]	C	A	2.214e^-4	0.934	INTRON ASPP
2L	15004882	2L_15004882_DEL [dm3] 2L_15004882_DEL [dm6]	TTACTCAGCCTT...	T	2.217e^-4	0.934	UPSTREAM dyn-p25 INTERGENIC	transposable element FlyBase
3L	18577465	3L_18577465_SNP [dm3] 3L_18584365_SNP [dm6]	A	T	2.229e^-4	0.934	DOWNSTREAM CR45435 INTERGENIC
3L	12296156	3L_12296156_SNP [dm3] 3L_12303056_SNP [dm6]	C	T	2.230e^-4	0.934	UPSTREAM CR44551 INTERGENIC
2L	20416492	2L_20416492_SNP [dm3] 2L_20416492_SNP [dm6]	C	T	2.231e^-4	0.934	SYNONYMOUS_CODING CG10949 UPSTREAM Arpc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	2434579	X_2434579_SNP [dm3] X_2540546_SNP [dm6]	C	T	2.235e^-4	0.934	INTRON trol
X	15357586	X_15357586_SNP [dm3] X_15463553_SNP [dm6]	C	T	2.243e^-4	0.934	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9403279	2L_9403279_SNP [dm3] 2L_9403279_SNP [dm6]	A	T	2.250e^-4	0.934	INTRON Shawl
X	8435333	X_8435333_SNP [dm3] X_8541300_SNP [dm6]	C	G	2.252e^-4	0.934	INTRON Nrg
3L	12061657	3L_12061657_SNP [dm3] 3L_12068557_SNP [dm6]	A	C	2.252e^-4	0.934	SYNONYMOUS_CODING Sema-5c
2R	17622048	2R_17622048_SNP [dm3] 2R_21734543_SNP [dm6]	C	G	2.253e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15917504	3R_15917504_SNP [dm3] 3R_20091782_SNP [dm6]	G	A	2.253e^-4	0.934	INTERGENIC
X	15357580	X_15357580_SNP [dm3] X_15463547_SNP [dm6]	G	T	2.257e^-4	0.934	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	18756336	X_18756336_SNP [dm3] X_18862303_SNP [dm6]	C	G	2.260e^-4	0.934	NON_SYNONYMOUS_CODING CG7326 DOWNSTREAM CG32544
X	16836808	X_16836808_SNP [dm3] X_16942775_SNP [dm6]	T	A	2.263e^-4	0.934	UTR_5_PRIME CG13001 UPSTREAM RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	785982	3L_785982_SNP [dm3] 3L_785982_SNP [dm6]	T	C	2.264e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17930197	3R_17930197_SNP [dm3] 3R_22104475_SNP [dm6]	C	G	2.266e^-4	0.934	INTRON CG5778 & 1 other
X	953465	X_953465_DEL [dm3] X_1059432_DEL [dm6]	AAGA	A	2.272e^-4	0.934	INTRON CR44779
2R	4558512	2R_4558512_INS [dm3] 2R_8671007_INS [dm6]	A	AGATCA	2.275e^-4	0.934	INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14128173	3L_14128173_SNP [dm3] 3L_14135073_SNP [dm6]	G	A	2.287e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
X	11112159	X_11112159_SNP [dm3] X_11218126_SNP [dm6]	C	T	2.289e^-4	0.934	INTERGENIC
3L	20445529	3L_20445529_SNP [dm3] 3L_20452429_SNP [dm6]	A	G	2.292e^-4	0.934	SYNONYMOUS_CODING CG5199 UPSTREAM Uhg8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	21875177	X_21875177_SNP [dm3] X_22473341_SNP [dm6]	C	T	2.298e^-4	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	22985693	3R_22985693_SNP [dm3] 3R_27159971_SNP [dm6]	C	A	2.313e^-4	0.934	DOWNSTREAM grass INTERGENIC
3R	5911891	3R_5911891_SNP [dm3] 3R_10086169_SNP [dm6]	T	A	2.314e^-4	0.934	INTRON CR45054	TF binding site mE1_TFBS_Trl
2L	8970697	2L_8970697_SNP [dm3] 2L_8970697_SNP [dm6]	T	C	2.314e^-4	0.934	UTR_3_PRIME CG9541 DOWNSTREAM CG18088	TF binding site BDTNP1_TFBS_twi
3L	9800230	3L_9800230_SNP [dm3] 3L_9807130_SNP [dm6]	C	T	2.316e^-4	0.934	INTRON CG32052	TF binding site mE1_TFBS_inv
X	4466149	X_4466149_SNP [dm3] X_4572116_SNP [dm6]	G	A	2.327e^-4	0.934	UPSTREAM CG12684 INTRON CR32773
4	759124	4_759124_SNP [dm3] 4_738498_SNP [dm6]	A	G	2.333e^-4	0.934	INTRON bt
3L	1327461	3L_1327461_SNP [dm3] 3L_1327461_SNP [dm6]	C	T	2.343e^-4	0.934	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4450612	2L_4450612_SNP [dm3] 2L_4450612_SNP [dm6]	T	C	2.346e^-4	0.934	INTRON CG15439
3R	13911632	3R_13911632_SNP [dm3] 3R_18085910_SNP [dm6]	T	G	2.379e^-4	0.934	INTERGENIC
X	15338671	X_15338671_DEL [dm3] X_15444638_DEL [dm6]	AG	A	2.381e^-4	0.934	INTERGENIC
2L	9908675	2L_9908675_SNP [dm3] 2L_9908675_SNP [dm6]	T	A	2.386e^-4	0.934	UPSTREAM CG13124 DOWNSTREAM Etl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18267309	3R_18267309_SNP [dm3] 3R_22441587_SNP [dm6]	C	G	2.390e^-4	0.934	NON_SYNONYMOUS_CODING CG12499
2R	16512792	2R_16512792_SNP [dm3] 2R_20625287_SNP [dm6]	A	G	2.392e^-4	0.934	NON_SYNONYMOUS_CODING CG16742	TF binding site mE1_TFBS_sens
3R	26233621	3R_26233621_SNP [dm3] 3R_30407899_SNP [dm6]	C	T	2.400e^-4	0.934	INTERGENIC
2L	5858667	2L_5858667_DEL [dm3] 2L_5858667_DEL [dm6]	TT	T	2.403e^-4	0.934	INTERGENIC
2L	8906306	2L_8906306_SNP [dm3] 2L_8906306_SNP [dm6]	C	T	2.404e^-4	0.934	INTRON CG34398
2R	18723753	2R_18723753_SNP [dm3] 2R_22836230_SNP [dm6]	T	C	2.408e^-4	0.934	SYNONYMOUS_CODING CG12490
2L	10187242	2L_10187242_SNP [dm3] 2L_10187242_SNP [dm6]	C	G	2.413e^-4	0.934	INTRON Sur
3R	10988141	3R_10988141_SNP [dm3] 3R_15162419_SNP [dm6]	T	C	2.414e^-4	0.934	INTRON Gyc88E
3R	5914226	3R_5914226_SNP [dm3] 3R_10088504_SNP [dm6]	T	A	2.417e^-4	0.934	INTRON CR45054
3R	22990041	3R_22990041_SNP [dm3] 3R_27164319_SNP [dm6]	C	T	2.423e^-4	0.934	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG34293
X	13164960	X_13164960_SNP [dm3] X_13270927_SNP [dm6]	C	G	2.426e^-4	0.934	INTRON HDAC4
2R	7601129	2R_7601129_SNP [dm3] 2R_11713624_SNP [dm6]	G	A	2.435e^-4	0.934	INTRON pyr
X	16310780	X_16310780_SNP [dm3] X_16416747_SNP [dm6]	T	C	2.445e^-4	0.934	DOWNSTREAM AnxB11 INTRON Traf-like
X	16310825	X_16310825_SNP [dm3] X_16416792_SNP [dm6]	T	C	2.450e^-4	0.934	DOWNSTREAM AnxB11 INTRON Traf-like
4	655974	4_655974_SNP [dm3] 4_635348_SNP [dm6]	C	A	2.466e^-4	0.934	UTR_3_PRIME CG1732 DOWNSTREAM CG9935
X	16143356	X_16143356_INS [dm3] X_16249323_INS [dm6]	C	CCCATTGC	2.472e^-4	0.934	INTERGENIC
2L	21754653	2L_21754653_SNP [dm3] 2L_21754653_SNP [dm6]	A	G	2.473e^-4	0.934	UPSTREAM step INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7320588	2R_7320588_SNP [dm3] 2R_11433083_SNP [dm6]	T	A	2.476e^-4	0.934	EXON CR43771
3R	23188153	3R_23188153_SNP [dm3] 3R_27362431_SNP [dm6]	C	T	2.479e^-4	0.934	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_cad
X	13802710	X_13802710_SNP [dm3] X_13908677_SNP [dm6]	T	G	2.486e^-4	0.934	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	8445748	2L_8445748_SNP [dm3] 2L_8445748_SNP [dm6]	T	G	2.488e^-4	0.934	UTR_3_PRIME CG31897 DOWNSTREAM U26
2L	8869324	2L_8869324_SNP [dm3] 2L_8869324_SNP [dm6]	T	C	2.489e^-4	0.934	DOWNSTREAM CR44414 INTERGENIC
2L	10023580	2L_10023580_SNP [dm3] 2L_10023580_SNP [dm6]	C	G	2.508e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	8976251	2L_8976251_SNP [dm3] 2L_8976251_SNP [dm6]	G	C	2.517e^-4	0.934	UPSTREAM CG9541 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5858684	2L_5858684_SNP [dm3] 2L_5858684_SNP [dm6]	A	G	2.519e^-4	0.934	INTERGENIC
3R	24689479	3R_24689479_SNP [dm3] 3R_28863757_SNP [dm6]	C	A	2.519e^-4	0.934	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2707630	3L_2707630_SNP [dm3] 3L_2707630_SNP [dm6]	G	A	2.520e^-4	0.934	INTRON Fife
X	4390240	X_4390240_SNP [dm3] X_4496207_SNP [dm6]	C	T	2.521e^-4	0.934	INTRON CR32773
X	10927138	X_10927138_SNP [dm3] X_11033105_SNP [dm6]	T	C	2.523e^-4	0.934	INTRON CG42339
2R	7182170	2R_7182170_SNP [dm3] 2R_11294665_SNP [dm6]	C	T	2.526e^-4	0.934	UTR_3_PRIME CG42336 UPSTREAM CG18336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21901095	3L_21901095_SNP [dm3] 3L_21907995_SNP [dm6]	T	C	2.529e^-4	0.934	INTRON mub
2L	16293721	2L_16293721_SNP [dm3] 2L_16293721_SNP [dm6]	T	G	2.532e^-4	0.934	UPSTREAM CG13258 & 1 other EXON CR44899
X	8217175	X_8217175_SNP [dm3] X_8323142_SNP [dm6]	T	A	2.535e^-4	0.934	INTRON nAChRalpha3
3L	6253189	3L_6253189_SNP [dm3] 3L_6260089_SNP [dm6]	G	A	2.537e^-4	0.934	SYNONYMOUS_CODING ImpL3
2R	13022103	2R_13022103_SNP [dm3] 2R_17134598_SNP [dm6]	G	A	2.539e^-4	0.934	NON_SYNONYMOUS_CODING CG11400 UPSTREAM CR44391 DOWNSTREAM Acp54A1
3R	20456197	3R_20456197_SNP [dm3] 3R_24630475_SNP [dm6]	G	C	2.551e^-4	0.934	UTR_5_PRIME atl UPSTREAM atl & 1 other INTRON atl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6881292	X_6881292_SNP [dm3] X_6987259_SNP [dm6]	A	G	2.554e^-4	0.934	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	13378686	X_13378686_SNP [dm3] X_13484653_SNP [dm6]	C	T	2.557e^-4	0.934	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8619146	2L_8619146_SNP [dm3] 2L_8619146_SNP [dm6]	G	A	2.559e^-4	0.934	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3R	25215541	3R_25215541_SNP [dm3] 3R_29389819_SNP [dm6]	G	T	2.560e^-4	0.934	INTRON Ptp99A
2R	10634940	2R_10634940_SNP [dm3] 2R_14747435_SNP [dm6]	C	T	2.564e^-4	0.934	SYNONYMOUS_CODING AttA DOWNSTREAM Dro
2R	2493605	2R_2493605_SNP [dm3] 2R_6606100_SNP [dm6]	A	G	2.565e^-4	0.934	INTRON jing	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20666336	3R_20666336_SNP [dm3] 3R_24840614_SNP [dm6]	T	G	2.569e^-4	0.934	SYNONYMOUS_CODING CG33658 DOWNSTREAM sosie
X	15530395	X_15530395_SNP [dm3] X_15636362_SNP [dm6]	T	G	2.577e^-4	0.934	EXON CR44423
2L	19372094	2L_19372094_DEL [dm3] 2L_19372094_DEL [dm6]	TCCT	T	2.593e^-4	0.934	INTRON CG17349
X	11157996	X_11157996_SNP [dm3] X_11263963_SNP [dm6]	A	G	2.597e^-4	0.934	INTRON CG44422
3L	14829913	3L_14829913_SNP [dm3] 3L_14836813_SNP [dm6]	G	A	2.599e^-4	0.934	INTRON CG17839
2L	8869685	2L_8869685_SNP [dm3] 2L_8869685_SNP [dm6]	C	T	2.600e^-4	0.934	DOWNSTREAM CR44414 INTERGENIC
2L	8948444	2L_8948444_SNP [dm3] 2L_8948444_SNP [dm6]	C	T	2.603e^-4	0.934	INTRON C1GalTA
4	622274	4_622274_SNP [dm3] 4_601648_SNP [dm6]	C	A	2.606e^-4	0.934	INTRON onecut
2L	20518020	2L_20518020_INS [dm3] 2L_20518020_INS [dm6]	C	CTCATTCCTAGCCC...	2.610e^-4	0.934	INTERGENIC
3R	25407036	3R_25407036_SNP [dm3] 3R_29581314_SNP [dm6]	T	G	2.610e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14375754	X_14375754_SNP [dm3] X_14481721_SNP [dm6]	A	C	2.626e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12742751	X_12742751_SNP [dm3] X_12848718_SNP [dm6]	T	C	2.639e^-4	0.934	INTRON Pde9	TF binding site mE1_TFBS_inv
2L	9682248	2L_9682248_SNP [dm3] 2L_9682248_SNP [dm6]	A	G	2.643e^-4	0.934	DOWNSTREAM Pka-C1 INTERGENIC
3R	17897828	3R_17897828_SNP [dm3] 3R_22072106_SNP [dm6]	C	T	2.644e^-4	0.934	UTR_3_PRIME how INTRON how
2L	9908674	2L_9908674_SNP [dm3] 2L_9908674_SNP [dm6]	T	A	2.647e^-4	0.934	UPSTREAM CG13124 DOWNSTREAM Etl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21976169	3R_21976169_SNP [dm3] 3R_26150447_SNP [dm6]	T	C	2.647e^-4	0.934	INTERGENIC
3L	6147199	3L_6147199_SNP [dm3] 3L_6154099_SNP [dm6]	A	T	2.651e^-4	0.934	DOWNSTREAM CR45421 INTERGENIC
X	2390630	X_2390630_SNP [dm3] X_2496597_SNP [dm6]	C	T	2.658e^-4	0.934	SPLICE_SITE_REGION trol INTRON trol	TF binding site BDTNP1_TFBS_dl
2R	4699372	2R_4699372_SNP [dm3] 2R_8811867_SNP [dm6]	A	G	2.663e^-4	0.934	INTRON sns	TF binding site mE1_TFBS_cad
2L	13271011	2L_13271011_SNP [dm3] 2L_13271011_SNP [dm6]	A	G	2.664e^-4	0.934	INTRON CG44085
3L	8119562	3L_8119562_SNP [dm3] 3L_8126462_SNP [dm6]	C	T	2.668e^-4	0.934	SYNONYMOUS_CODING Uba2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	2.672e^-4	0.934	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	10025412	2L_10025412_SNP [dm3] 2L_10025412_SNP [dm6]	T	C	2.680e^-4	0.934	INTERGENIC
X	6883570	X_6883570_SNP [dm3] X_6989537_SNP [dm6]	G	A	2.692e^-4	0.934	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8940495	2L_8940495_SNP [dm3] 2L_8940495_SNP [dm6]	C	T	2.695e^-4	0.934	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
2L	20854350	2L_20854350_SNP [dm3] 2L_20854350_SNP [dm6]	T	C	2.699e^-4	0.934	INTRON twit
X	8217157	X_8217157_DEL [dm3] X_8323124_DEL [dm6]	TTT	T	2.708e^-4	0.934	INTRON nAChRalpha3
2L	11495972	2L_11495972_SNP [dm3] 2L_11495972_SNP [dm6]	A	C	2.713e^-4	0.934	DOWNSTREAM CG6488 INTERGENIC
2L	8873407	2L_8873407_SNP [dm3] 2L_8873407_SNP [dm6]	C	T	2.715e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2L	6227821	2L_6227821_INS [dm3] 2L_6227821_INS [dm6]	A	ATA	2.716e^-4	0.934	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2589141	3L_2589141_SNP [dm3] 3L_2589141_SNP [dm6]	C	T	2.718e^-4	0.934	UPSTREAM dos DOWNSTREAM RpL8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	20335206	3L_20335206_SNP [dm3] 3L_20342106_SNP [dm6]	C	T	2.722e^-4	0.934	UPSTREAM Spn77Bc INTERGENIC	transposable element FlyBase
3L	14128187	3L_14128187_SNP [dm3] 3L_14135087_SNP [dm6]	C	T	2.723e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
X	900848	X_900848_SNP [dm3] X_1006815_SNP [dm6]	T	C	2.723e^-4	0.934	INTERGENIC
2L	17042577	2L_17042577_SNP [dm3] 2L_17042577_SNP [dm6]	A	C	2.735e^-4	0.934	EXON CR43802
2L	8868929	2L_8868929_SNP [dm3] 2L_8868929_SNP [dm6]	C	A	2.748e^-4	0.934	DOWNSTREAM CR44414 INTERGENIC
3R	22985711	3R_22985711_SNP [dm3] 3R_27159989_SNP [dm6]	T	C	2.759e^-4	0.934	DOWNSTREAM grass INTERGENIC
3R	22985605	3R_22985605_SNP [dm3] 3R_27159883_SNP [dm6]	T	C	2.773e^-4	0.934	DOWNSTREAM grass INTERGENIC
3R	11024891	3R_11024891_SNP [dm3] 3R_15199169_SNP [dm6]	C	T	2.775e^-4	0.934	INTRON CG42542	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7104615	2L_7104615_SNP [dm3] 2L_7104615_SNP [dm6]	C	T	2.777e^-4	0.934	INTRON Pvf3
X	6781434	X_6781434_SNP [dm3] X_6887401_SNP [dm6]	G	A	2.791e^-4	0.934	INTERGENIC
3L	1244338	3L_1244338_SNP [dm3] 3L_1244338_SNP [dm6]	C	T	2.792e^-4	0.934	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
X	5765385	X_5765385_SNP [dm3] X_5871352_SNP [dm6]	A	G	2.796e^-4	0.934	SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad
3L	9049825	3L_9049825_SNP [dm3] 3L_9056725_SNP [dm6]	T	G	2.801e^-4	0.934	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run
X	2223391	X_2223391_SNP [dm3] X_2329358_SNP [dm6]	T	C	2.807e^-4	0.934	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
2L	7202014	2L_7202014_SNP [dm3] 2L_7202014_SNP [dm6]	C	A	2.807e^-4	0.934	INTRON CG4502
2L	7092914	2L_7092914_SNP [dm3] 2L_7092914_SNP [dm6]	T	C	2.808e^-4	0.934	INTERGENIC
X	8519558	X_8519558_DEL [dm3] X_8625525_DEL [dm6]	TT	T	2.820e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
4	780875	4_780875_SNP [dm3] 4_760249_SNP [dm6]	C	G	2.821e^-4	0.934	SYNONYMOUS_CODING bt
2R	17589038	2R_17589038_SNP [dm3] 2R_21701533_SNP [dm6]	A	T	2.826e^-4	0.934	START_GAINED HmgD UTR_5_PRIME HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	7518568	3L_7518568_SNP [dm3] 3L_7525468_SNP [dm6]	G	A	2.835e^-4	0.934	SYNONYMOUS_CODING ltl
3R	16001920	3R_16001920_INS [dm3] 3R_20176198_INS [dm6]	C	CCC	2.844e^-4	0.934	INTERGENIC
X	21875087	X_21875087_SNP [dm3] X_22473251_SNP [dm6]	A	T	2.846e^-4	0.934	UPSTREAM CG14618 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	4470528	X_4470528_SNP [dm3] X_4576495_SNP [dm6]	C	G	2.863e^-4	0.934	INTRON CR32773
3R	18434122	3R_18434122_SNP [dm3] 3R_22608400_SNP [dm6]	G	T	2.871e^-4	0.934	UTR_3_PRIME Efa6 DOWNSTREAM CG31156
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	2.875e^-4	0.934	INTRON CG4502
3R	24655813	3R_24655813_SNP [dm3] 3R_28830091_SNP [dm6]	A	C	2.883e^-4	0.934	INTRON WASp
X	14375788	X_14375788_SNP [dm3] X_14481755_SNP [dm6]	G	C	2.888e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25538205	3R_25538205_SNP [dm3] 3R_29712483_SNP [dm6]	C	T	2.896e^-4	0.934	DOWNSTREAM CR45569 INTERGENIC
X	9085260	X_9085260_SNP [dm3] X_9191227_SNP [dm6]	C	T	2.908e^-4	0.934	UPSTREAM CG12115 & 1 other INTERGENIC
2R	5296246	2R_5296246_SNP [dm3] 2R_9408741_SNP [dm6]	C	A	2.908e^-4	0.934	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25407034	3R_25407034_SNP [dm3] 3R_29581312_SNP [dm6]	A	C	2.909e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23188144	3R_23188144_SNP [dm3] 3R_27362422_SNP [dm6]	A	G	2.921e^-4	0.934	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_cad
2L	20608294	2L_20608294_SNP [dm3] 2L_20608294_SNP [dm6]	T	C	2.921e^-4	0.934	UPSTREAM CR43608 INTRON CR44909
2R	7529524	2R_7529524_DEL [dm3] 2R_11642019_DEL [dm6]	AGGG	A	2.922e^-4	0.934	UTR_3_PRIME CG9003 DOWNSTREAM CG9003
3R	14673072	3R_14673072_SNP [dm3] 3R_18847350_SNP [dm6]	A	G	2.927e^-4	0.934	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9570548	3R_9570548_DEL [dm3] 3R_13744826_DEL [dm6]	AC	A	2.932e^-4	0.934	UTR_5_PRIME CG34383 INTRON CG34383
2L	10621974	2L_10621974_SNP [dm3] 2L_10621974_SNP [dm6]	C	T	2.965e^-4	0.934	INTRON Trim9
2L	4450601	2L_4450601_SNP [dm3] 2L_4450601_SNP [dm6]	C	T	2.980e^-4	0.934	INTRON CG15439
2L	8344212	2L_8344212_SNP [dm3] 2L_8344212_SNP [dm6]	G	A	2.989e^-4	0.934	NON_SYNONYMOUS_CODING CG14273 EXON CR45371
X	8217151	X_8217151_SNP [dm3] X_8323118_SNP [dm6]	C	T	2.991e^-4	0.934	INTRON nAChRalpha3
2L	6624101	2L_6624101_SNP [dm3] 2L_6624101_SNP [dm6]	A	T	2.993e^-4	0.934	INTRON CG34345
2R	4558516	2R_4558516_SNP [dm3] 2R_8671011_SNP [dm6]	G	A	2.994e^-4	0.934	INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5318231	2R_5318231_SNP [dm3] 2R_9430726_SNP [dm6]	A	C	2.999e^-4	0.934	INTRON Pdk
X	8217204	X_8217204_SNP [dm3] X_8323171_SNP [dm6]	A	C	2.999e^-4	0.934	INTRON nAChRalpha3
X	2381084	X_2381084_SNP [dm3] X_2487051_SNP [dm6]	A	G	3.015e^-4	0.934	SYNONYMOUS_CODING trol
3R	21375817	3R_21375817_SNP [dm3] 3R_25550095_SNP [dm6]	T	A	3.023e^-4	0.934	INTRON msi
2L	6607825	2L_6607825_SNP [dm3] 2L_6607825_SNP [dm6]	T	C	3.026e^-4	0.934	INTERGENIC
3R	5908633	3R_5908633_SNP [dm3] 3R_10082911_SNP [dm6]	G	C	3.030e^-4	0.934	UPSTREAM CR45054 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15917509	3R_15917509_SNP [dm3] 3R_20091787_SNP [dm6]	T	A	3.031e^-4	0.934	INTERGENIC
X	14511644	X_14511644_SNP [dm3] X_14617611_SNP [dm6]	C	T	3.058e^-4	0.934	INTRON NetA
3R	16387525	3R_16387525_SNP [dm3] 3R_20561803_SNP [dm6]	G	A	3.063e^-4	0.934	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9387027	2L_9387027_SNP [dm3] 2L_9387027_SNP [dm6]	A	G	3.067e^-4	0.934	UPSTREAM Aldh INTRON Shawl
X	1378881	X_1378881_SNP [dm3] X_1484848_SNP [dm6]	T	G	3.068e^-4	0.934	UTR_3_PRIME Nmdar2 INTRON inc	TF binding site BDTNP1_TFBS_twi
X	19430452	X_19430452_SNP [dm3] X_19536419_SNP [dm6]	T	C	3.071e^-4	0.934	INTRON CG32532
3L	5437516	3L_5437516_SNP [dm3] 3L_5444416_SNP [dm6]	T	G	3.074e^-4	0.934	INTERGENIC
3R	11002511	3R_11002511_SNP [dm3] 3R_15176789_SNP [dm6]	A	G	3.075e^-4	0.934	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
X	20421225	X_20421225_SNP [dm3] X_20550198_SNP [dm6]	A	G	3.077e^-4	0.934	INTRON RunxB
3L	5199334	3L_5199334_SNP [dm3] 3L_5206234_SNP [dm6]	T	G	3.080e^-4	0.934	INTRON shep
3R	15488985	3R_15488985_SNP [dm3] 3R_19663263_SNP [dm6]	C	T	3.086e^-4	0.934	SYNONYMOUS_CODING ort
2L	8948472	2L_8948472_SNP [dm3] 2L_8948472_SNP [dm6]	T	A	3.087e^-4	0.934	INTRON C1GalTA
3R	23059874	3R_23059874_SNP [dm3] 3R_27234152_SNP [dm6]	A	G	3.099e^-4	0.934	SYNONYMOUS_CODING CG31068 INTRON CG31064
2L	8982257	2L_8982257_SNP [dm3] 2L_8982257_SNP [dm6]	A	T	3.103e^-4	0.934	DOWNSTREAM CG18662 INTRON CG13101
2L	9237096	2L_9237096_SNP [dm3] 2L_9237096_SNP [dm6]	C	T	3.110e^-4	0.934	UPSTREAM tRNA:CR31885 INTRON tai
2L	6622577	2L_6622577_SNP [dm3] 2L_6622577_SNP [dm6]	T	C	3.112e^-4	0.934	UPSTREAM CG11320 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11205706	3R_11205706_SNP [dm3] 3R_15379984_SNP [dm6]	T	A	3.117e^-4	0.934	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2276360	X_2276360_SNP [dm3] X_2382327_SNP [dm6]	C	T	3.118e^-4	0.934	INTRON PsGEF	TF binding site mE1_TFBS_chinmo
2L	5090314	2L_5090314_SNP [dm3] 2L_5090314_SNP [dm6]	G	T	3.121e^-4	0.934	INTRON pgant5
X	13378681	X_13378681_SNP [dm3] X_13484648_SNP [dm6]	G	T	3.137e^-4	0.934	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8091569	X_8091569_DEL [dm3] X_8197536_DEL [dm6]	AA	A	3.138e^-4	0.934	INTRON sdt
2L	19810256	2L_19810256_SNP [dm3] 2L_19810256_SNP [dm6]	G	A	3.143e^-4	0.934	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	24655855	3R_24655855_SNP [dm3] 3R_28830133_SNP [dm6]	G	T	3.147e^-4	0.934	INTRON WASp
3L	8922893	3L_8922893_INS [dm3] 3L_8929793_INS [dm6]	A	ACAATA	3.149e^-4	0.934	INTRON Tsp66E
X	2322133	X_2322133_SNP [dm3] X_2428100_SNP [dm6]	C	T	3.150e^-4	0.934	SYNONYMOUS_CODING gt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	18720483	2R_18720483_SNP [dm3] 2R_22832960_SNP [dm6]	C	A	3.153e^-4	0.934	NON_SYNONYMOUS_CODING CG30265
X	18436143	X_18436143_INS [dm3] X_18542110_INS [dm6]	A	ACATA	3.153e^-4	0.934	INTRON Bx
2L	8955021	2L_8955021_SNP [dm3] 2L_8955021_SNP [dm6]	G	A	3.164e^-4	0.934	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	1041386	3L_1041386_SNP [dm3] 3L_1041386_SNP [dm6]	T	G	3.165e^-4	0.934	INTRON bab1
2L	20145355	2L_20145355_SNP [dm3] 2L_20145355_SNP [dm6]	A	T	3.166e^-4	0.934	INTERGENIC
2L	8543529	2L_8543529_SNP [dm3] 2L_8543529_SNP [dm6]	C	G	3.166e^-4	0.934	START_GAINED Sema-1a UTR_5_PRIME Sema-1a INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9387017	2L_9387017_SNP [dm3] 2L_9387017_SNP [dm6]	T	C	3.169e^-4	0.934	UPSTREAM Aldh INTRON Shawl
3L	1103304	3L_1103304_SNP [dm3] 3L_1103304_SNP [dm6]	T	A	3.169e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22954544	3R_22954544_SNP [dm3] 3R_27128822_SNP [dm6]	T	A	3.177e^-4	0.934	INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21908353	3L_21908353_SNP [dm3] 3L_21915253_SNP [dm6]	C	T	3.178e^-4	0.934	SPLICE_SITE_REGION mub INTRON mub
X	6881502	X_6881502_SNP [dm3] X_6987469_SNP [dm6]	T	G	3.181e^-4	0.934	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20599492	2L_20599492_SNP [dm3] 2L_20599492_SNP [dm6]	G	C	3.181e^-4	0.934	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9570571	3R_9570571_SNP [dm3] 3R_13744849_SNP [dm6]	T	G	3.189e^-4	0.934	UTR_5_PRIME CG34383 INTRON CG34383
3R	24857854	3R_24857854_SNP [dm3] 3R_29032132_SNP [dm6]	C	A	3.189e^-4	0.934	DOWNSTREAM beta4GalNAcTB INTRON Ssl2 EXON CR45044
3R	10947613	3R_10947613_SNP [dm3] 3R_15121891_SNP [dm6]	G	A	3.199e^-4	0.934	INTRON CG42788	regulatory region REDfly_CRMs
2L	15327746	2L_15327746_SNP [dm3] 2L_15327746_SNP [dm6]	A	C	3.202e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	20592530	2L_20592530_SNP [dm3] 2L_20592530_SNP [dm6]	T	G	3.207e^-4	0.934	INTRON CR44909
2L	6936240	2L_6936240_SNP [dm3] 2L_6936240_SNP [dm6]	C	T	3.209e^-4	0.934	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7092919	2L_7092919_SNP [dm3] 2L_7092919_SNP [dm6]	A	T	3.211e^-4	0.934	INTERGENIC
3R	11024910	3R_11024910_INS [dm3] 3R_15199188_INS [dm6]	T	TT	3.216e^-4	0.934	INTRON CG42542	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8217212	X_8217212_SNP [dm3] X_8323179_SNP [dm6]	G	A	3.217e^-4	0.934	INTRON nAChRalpha3
3L	12747390	3L_12747390_SNP [dm3] 3L_12754290_SNP [dm6]	C	T	3.222e^-4	0.934	UPSTREAM CG32113 DOWNSTREAM CG10984 INTRON CG10973	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	13259478	X_13259478_SNP [dm3] X_13365445_SNP [dm6]	G	A	3.223e^-4	0.934	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8855562	2L_8855562_SNP [dm3] 2L_8855562_SNP [dm6]	A	G	3.241e^-4	0.934	INTERGENIC
2L	9403063	2L_9403063_SNP [dm3] 2L_9403063_SNP [dm6]	C	T	3.245e^-4	0.934	INTRON Shawl
X	9334891	X_9334891_SNP [dm3] X_9440858_SNP [dm6]	C	T	3.248e^-4	0.934	INTRON mgl
X	9084182	X_9084182_SNP [dm3] X_9190149_SNP [dm6]	A	G	3.250e^-4	0.934	DOWNSTREAM mei-P26 INTRON CG12115
2L	9719989	2L_9719989_SNP [dm3] 2L_9719989_SNP [dm6]	T	G	3.251e^-4	0.934	INTRON Nckx30C
2L	8872803	2L_8872803_SNP [dm3] 2L_8872803_SNP [dm6]	G	A	3.252e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12224092	3R_12224092_SNP [dm3] 3R_16398370_SNP [dm6]	C	T	3.253e^-4	0.934	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16078386	X_16078386_SNP [dm3] X_16184353_SNP [dm6]	A	G	3.264e^-4	0.934	INTERGENIC
X	9081790	X_9081790_SNP [dm3] X_9187757_SNP [dm6]	G	A	3.265e^-4	0.934	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8874977	2L_8874977_INS [dm3] 2L_8874977_INS [dm6]	A	ACATG	3.269e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	3.270e^-4	0.934	INTERGENIC
3L	12061684	3L_12061684_SNP [dm3] 3L_12068584_SNP [dm6]	T	C	3.270e^-4	0.934	SYNONYMOUS_CODING Sema-5c
X	6796634	X_6796634_SNP [dm3] X_6902601_SNP [dm6]	A	C	3.276e^-4	0.934	INTERGENIC
2L	16293761	2L_16293761_DEL [dm3] 2L_16293761_DEL [dm6]	TATATTCTTGGTCAAGTCTG...	T	3.284e^-4	0.934	UPSTREAM CG13258 & 2 others INTERGENIC
3L	2588955	3L_2588955_SNP [dm3] 3L_2588955_SNP [dm6]	A	G	3.288e^-4	0.934	UPSTREAM dos DOWNSTREAM RpL8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	26749557	3R_26749557_SNP [dm3] 3R_30923835_SNP [dm6]	G	A	3.294e^-4	0.934	INTRON Ptx1	TF binding site mE1_TFBS_cad
2L	20390629	2L_20390629_SNP [dm3] 2L_20390629_SNP [dm6]	T	A	3.300e^-4	0.934	INTRON CG10947
3R	19030793	3R_19030793_SNP [dm3] 3R_23205071_SNP [dm6]	G	A	3.310e^-4	0.934	INTRON cnc	TF binding site mE1_TFBS_cnc
2L	9403096	2L_9403096_SNP [dm3] 2L_9403096_SNP [dm6]	T	A	3.316e^-4	0.934	INTRON Shawl
2L	394270	2L_394270_DEL [dm3] 2L_394270_DEL [dm6]	AATACCTAAAC...	A	3.324e^-4	0.934	INTERGENIC
2L	20589038	2L_20589038_SNP [dm3] 2L_20589038_SNP [dm6]	A	G	3.332e^-4	0.934	INTRON CR44909
2R	6490590	2R_6490590_SNP [dm3] 2R_10603085_SNP [dm6]	G	C	3.334e^-4	0.934	INTRON psq	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17713101	X_17713101_SNP [dm3] X_17819068_SNP [dm6]	G	A	3.346e^-4	0.934	DOWNSTREAM CG12986 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22985099	3R_22985099_SNP [dm3] 3R_27159377_SNP [dm6]	G	C	3.348e^-4	0.934	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20868166	3R_20868166_SNP [dm3] 3R_25042444_SNP [dm6]	C	T	3.354e^-4	0.934	NON_SYNONYMOUS_CODING 5PtaseI INTRON 5PtaseI	TF binding site mE1_TFBS_sens
2L	13758782	2L_13758782_SNP [dm3] 2L_13758782_SNP [dm6]	C	A	3.362e^-4	0.934	INTRON TM9SF4
3R	27129808	3R_27129808_SNP [dm3] 3R_31304086_SNP [dm6]	C	T	3.379e^-4	0.934	SYNONYMOUS_CODING CG11340
X	947725	X_947725_SNP [dm3] X_1053692_SNP [dm6]	G	A	3.380e^-4	0.934	INTRON CR44779
2L	9327607	2L_9327607_SNP [dm3] 2L_9327607_SNP [dm6]	C	T	3.383e^-4	0.934	UPSTREAM CG17005 DOWNSTREAM CR45456 & 1 other INTERGENIC
2R	12512823	2R_12512823_SNP [dm3] 2R_16625318_SNP [dm6]	T	A	3.392e^-4	0.934	UTR_3_PRIME Alk DOWNSTREAM CG5065 & 1 other
2L	4854954	2L_4854954_SNP [dm3] 2L_4854954_SNP [dm6]	C	T	3.408e^-4	0.934	INTRON pog	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	2754014	3R_2754014_SNP [dm3] 3R_6928292_SNP [dm6]	G	T	3.413e^-4	0.934	INTRON Antp
3R	24780004	3R_24780004_SNP [dm3] 3R_28954282_SNP [dm6]	T	C	3.414e^-4	0.934	INTRON CG14521
3L	1519678	3L_1519678_DEL [dm3] 3L_1519678_DEL [dm6]	GTTAGTTCATAAACTAGAG...	G	3.417e^-4	0.934	INTRON Psa
3L	1073192	3L_1073192_SNP [dm3] 3L_1073192_SNP [dm6]	G	A	3.428e^-4	0.934	INTRON bab1
2L	13269783	2L_13269783_SNP [dm3] 2L_13269783_SNP [dm6]	C	T	3.428e^-4	0.934	INTRON CG44085
X	21361312	X_21361312_SNP [dm3] X_21490285_SNP [dm6]	A	T	3.429e^-4	0.934	INTERGENIC
3L	17275323	3L_17275323_SNP [dm3] 3L_17282223_SNP [dm6]	C	A	3.434e^-4	0.934	INTERGENIC
3L	12747407	3L_12747407_SNP [dm3] 3L_12754307_SNP [dm6]	C	T	3.438e^-4	0.934	UPSTREAM CG32113 DOWNSTREAM CG10984 INTRON CG10973	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12317749	3L_12317749_SNP [dm3] 3L_12324649_SNP [dm6]	A	G	3.440e^-4	0.934	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi
X	8519402	X_8519402_SNP [dm3] X_8625369_SNP [dm6]	A	G	3.442e^-4	0.934	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
X	10067960	X_10067960_SNP [dm3] X_10173927_SNP [dm6]	C	T	3.453e^-4	0.934	INTRON CG43902 & 1 other
3L	7723132	3L_7723132_SNP [dm3] 3L_7730032_SNP [dm6]	T	G	3.456e^-4	0.934	SYNONYMOUS_CODING CG8492 INTRON CG32373
2L	10018172	2L_10018172_SNP [dm3] 2L_10018172_SNP [dm6]	C	T	3.456e^-4	0.934	UPSTREAM CG13131 INTERGENIC
2R	13804312	2R_13804312_SNP [dm3] 2R_17916807_SNP [dm6]	G	T	3.458e^-4	0.934	INTRON Elk
X	8330490	X_8330490_SNP [dm3] X_8436457_SNP [dm6]	T	C	3.458e^-4	0.934	UTR_5_PRIME CG12125 UPSTREAM CG1440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18722744	2R_18722744_SNP [dm3] 2R_22835221_SNP [dm6]	A	T	3.458e^-4	0.934	SYNONYMOUS_CODING CG12490 DOWNSTREAM CG30265
3L	5777514	3L_5777514_SNP [dm3] 3L_5784414_SNP [dm6]	C	T	3.460e^-4	0.934	SYNONYMOUS_CODING Cralbp UTR_3_PRIME Pmi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14071812	X_14071812_SNP [dm3] X_14177779_SNP [dm6]	G	A	3.461e^-4	0.934	NON_SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
X	14071885	X_14071885_SNP [dm3] X_14177852_SNP [dm6]	G	A	3.461e^-4	0.934	SYNONYMOUS_CODING CG11581
2R	16508079	2R_16508079_SNP [dm3] 2R_20620574_SNP [dm6]	C	T	3.462e^-4	0.934	DOWNSTREAM CG11180 INTRON CG9945
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	3.463e^-4	0.934	INTERGENIC
2L	12682317	2L_12682317_SNP [dm3] 2L_12682317_SNP [dm6]	G	A	3.465e^-4	0.934	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	16294123	2L_16294123_SNP [dm3] 2L_16294123_SNP [dm6]	A	G	3.473e^-4	0.934	UPSTREAM Cyp303a1 & 1 other INTERGENIC
2L	1850857	2L_1850857_SNP [dm3] 2L_1850857_SNP [dm6]	G	C	3.477e^-4	0.934	INTRON wry
2R	19832875	2R_19832875_SNP [dm3] 2R_23945352_SNP [dm6]	A	G	3.478e^-4	0.934	INTRON Galphas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1601240	3L_1601240_SNP [dm3] 3L_1601240_SNP [dm6]	A	C	3.483e^-4	0.934	UTR_3_PRIME CG12104 DOWNSTREAM CG13917	TF binding site mE1_TFBS_cad
3L	18620922	3L_18620922_SNP [dm3] 3L_18627822_SNP [dm6]	T	C	3.485e^-4	0.934	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20550505	2L_20550505_SNP [dm3] 2L_20550505_SNP [dm6]	G	T	3.492e^-4	0.934	INTERGENIC
3R	24682606	3R_24682606_SNP [dm3] 3R_28856884_SNP [dm6]	G	C	3.493e^-4	0.934	INTRON spg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13660919	3R_13660919_SNP [dm3] 3R_17835197_SNP [dm6]	G	T	3.495e^-4	0.934	INTRON tinc
3R	22571904	3R_22571904_SNP [dm3] 3R_26746182_SNP [dm6]	C	A	3.503e^-4	0.934	INTERGENIC
4	733103	4_733103_SNP [dm3] 4_712477_SNP [dm6]	A	G	3.504e^-4	0.934	INTRON ey
3R	18109042	3R_18109042_SNP [dm3] 3R_22283320_SNP [dm6]	A	G	3.516e^-4	0.934	INTRON SKIP
2R	13804315	2R_13804315_SNP [dm3] 2R_17916810_SNP [dm6]	C	A	3.517e^-4	0.934	INTRON Elk
X	19654857	X_19654857_SNP [dm3] X_19760824_SNP [dm6]	A	G	3.520e^-4	0.934	SYNONYMOUS_CODING CG12702	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10553020	3L_10553020_SNP [dm3] 3L_10559920_SNP [dm6]	A	T	3.521e^-4	0.934	UPSTREAM CG6527 INTRON A2bp1
X	15189377	X_15189377_SNP [dm3] X_15295344_SNP [dm6]	G	T	3.528e^-4	0.934	SYNONYMOUS_CODING CG5877	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	22959132	3R_22959132_SNP [dm3] 3R_27133410_SNP [dm6]	C	T	3.531e^-4	0.934	INTRON CG6051
3R	19922310	3R_19922310_SNP [dm3] 3R_24096588_SNP [dm6]	G	C	3.532e^-4	0.934	INTRON 4EHP
X	13259656	X_13259656_SNP [dm3] X_13365623_SNP [dm6]	C	T	3.537e^-4	0.934	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19030975	3R_19030975_SNP [dm3] 3R_23205253_SNP [dm6]	A	G	3.545e^-4	0.934	INTRON cnc	TF binding site mE1_TFBS_cnc
2L	8962691	2L_8962691_SNP [dm3] 2L_8962691_SNP [dm6]	A	G	3.559e^-4	0.934	SYNONYMOUS_CODING CG32985 UPSTREAM CG9525
3R	19965157	3R_19965157_SNP [dm3] 3R_24139435_SNP [dm6]	G	A	3.559e^-4	0.934	INTRON Npc2f	TF binding site mE1_TFBS_HSA
3L	12056309	3L_12056309_SNP [dm3] 3L_12063209_SNP [dm6]	T	C	3.563e^-4	0.934	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19241791	2L_19241791_SNP [dm3] 2L_19241791_SNP [dm6]	C	T	3.565e^-4	0.934	INTERGENIC
X	2397175	X_2397175_DEL [dm3] X_2503142_DEL [dm6]	TA	T	3.571e^-4	0.934	INTRON trol
3L	11163144	3L_11163144_SNP [dm3] 3L_11170044_SNP [dm6]	C	T	3.579e^-4	0.934	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6256771	3L_6256771_SNP [dm3] 3L_6263671_SNP [dm6]	A	T	3.581e^-4	0.934	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15486659	3R_15486659_SNP [dm3] 3R_19660937_SNP [dm6]	G	A	3.582e^-4	0.934	INTRON ort
3R	12234511	3R_12234511_SNP [dm3] 3R_16408789_SNP [dm6]	T	G	3.590e^-4	0.934	INTERGENIC
2L	20567448	2L_20567448_SNP [dm3] 2L_20567448_SNP [dm6]	T	C	3.590e^-4	0.934	INTRON CR45347
3R	20920486	3R_20920486_SNP [dm3] 3R_25094764_SNP [dm6]	C	T	3.591e^-4	0.934	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20420037	2L_20420037_SNP [dm3] 2L_20420037_SNP [dm6]	C	T	3.593e^-4	0.934	DOWNSTREAM snoRNA:Psi18S-640b & 5 others INTRON Arpc2 EXON snoRNA:Psi18S-525g
3L	2410827	3L_2410827_SNP [dm3] 3L_2410827_SNP [dm6]	T	C	3.596e^-4	0.934	INTRON CG45186
3R	11697543	3R_11697543_SNP [dm3] 3R_15871821_SNP [dm6]	C	A	3.598e^-4	0.934	INTRON CG31183	transposable element FlyBase
3R	10162440	3R_10162440_SNP [dm3] 3R_14336718_SNP [dm6]	T	C	3.601e^-4	0.934	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	9536702	3R_9536702_SNP [dm3] 3R_13710980_SNP [dm6]	T	A	3.603e^-4	0.934	SYNONYMOUS_CODING primo-2 START_GAINED primo-1 UTR_5_PRIME primo-1 UPSTREAM primo-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10634904	2R_10634904_SNP [dm3] 2R_14747399_SNP [dm6]	C	G	3.618e^-4	0.934	NON_SYNONYMOUS_CODING AttA DOWNSTREAM Dro
2L	8869997	2L_8869997_SNP [dm3] 2L_8869997_SNP [dm6]	A	T	3.619e^-4	0.934	INTERGENIC
3R	14673021	3R_14673021_SNP [dm3] 3R_18847299_SNP [dm6]	A	T	3.626e^-4	0.934	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12028639	2L_12028639_SNP [dm3] 2L_12028639_SNP [dm6]	T	A	3.634e^-4	0.934	INTRON dmGlut	TF binding site mE1_TFBS_cad
3R	23948472	3R_23948472_SNP [dm3] 3R_28122750_SNP [dm6]	C	G	3.640e^-4	0.934	INTERGENIC
3R	5765379	3R_5765379_SNP [dm3] 3R_9939657_SNP [dm6]	T	C	3.643e^-4	0.934	INTRON Glut4EF
3L	18173256	3L_18173256_SNP [dm3] 3L_18180156_SNP [dm6]	G	A	3.643e^-4	0.934	INTRON W
3L	2849756	3L_2849756_SNP [dm3] 3L_2849756_SNP [dm6]	A	T	3.646e^-4	0.934	INTRON CG43444	TF binding site mE1_TFBS_cad
3R	5921548	3R_5921548_SNP [dm3] 3R_10095826_SNP [dm6]	C	T	3.646e^-4	0.934	EXON CR43459
3R	23912097	3R_23912097_SNP [dm3] 3R_28086375_SNP [dm6]	A	G	3.650e^-4	0.934	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi
3R	22954114	3R_22954114_SNP [dm3] 3R_27128392_SNP [dm6]	C	T	3.653e^-4	0.934	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6052058	2L_6052058_SNP [dm3] 2L_6052058_SNP [dm6]	T	C	3.656e^-4	0.934	INTRON CG9135	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9570552	3R_9570552_INS [dm3] 3R_13744830_INS [dm6]	A	AAAA	3.665e^-4	0.934	UTR_5_PRIME CG34383 INTRON CG34383
X	14897776	X_14897776_SNP [dm3] X_15003743_SNP [dm6]	C	A	3.671e^-4	0.934	INTRON eag
X	2400546	X_2400546_INS [dm3] X_2506513_INS [dm6]	T	TAAT	3.683e^-4	0.934	UPSTREAM trol INTRON trol
3L	5259049	3L_5259049_SNP [dm3] 3L_5265949_SNP [dm6]	T	C	3.693e^-4	0.934	INTRON shep
2L	11640443	2L_11640443_SNP [dm3] 2L_11640443_SNP [dm6]	G	T	3.693e^-4	0.934	INTERGENIC
X	10778050	X_10778050_SNP [dm3] X_10884017_SNP [dm6]	A	G	3.694e^-4	0.934	INTRON Ork1
2L	16176557	2L_16176557_INS [dm3] 2L_16176557_INS [dm6]	A	AA	3.695e^-4	0.934	INTRON Ca-alpha1D
3R	20909642	3R_20909642_SNP [dm3] 3R_25083920_SNP [dm6]	G	T	3.697e^-4	0.934	SYNONYMOUS_CODING fd96Ca	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14005958	3R_14005958_SNP [dm3] 3R_18180236_SNP [dm6]	G	A	3.698e^-4	0.934	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
X	10428714	X_10428714_SNP [dm3] X_10534681_SNP [dm6]	A	C	3.724e^-4	0.934	INTRON spri
2L	5842689	2L_5842689_SNP [dm3] 2L_5842689_SNP [dm6]	T	C	3.725e^-4	0.934	INTRON TrissinR
3R	21692789	3R_21692789_SNP [dm3] 3R_25867067_SNP [dm6]	G	A	3.725e^-4	0.934	UPSTREAM CG5890 INTRON CG5890
X	8639446	X_8639446_SNP [dm3] X_8745413_SNP [dm6]	T	A	3.729e^-4	0.934	INTERGENIC
3L	1613447	3L_1613447_MNP [dm3] 3L_1613447_MNP [dm6]	TGCT	CCAG	3.734e^-4	0.934	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
3L	4614622	3L_4614622_SNP [dm3] 3L_4614622_SNP [dm6]	A	T	3.735e^-4	0.934	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	1515818	3L_1515818_SNP [dm3] 3L_1515818_SNP [dm6]	G	C	3.737e^-4	0.934	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	16840668	X_16840668_SNP [dm3] X_16946635_SNP [dm6]	A	G	3.741e^-4	0.934	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2249914	2L_2249914_SNP [dm3] 2L_2249914_SNP [dm6]	T	G	3.744e^-4	0.934	DOWNSTREAM Ser12 INTERGENIC
2R	13804356	2R_13804356_SNP [dm3] 2R_17916851_SNP [dm6]	T	C	3.753e^-4	0.934	INTRON Elk
2R	17787089	2R_17787089_SNP [dm3] 2R_21899584_SNP [dm6]	T	C	3.759e^-4	0.934	INTRON Fili
3R	20333650	3R_20333650_SNP [dm3] 3R_24507928_SNP [dm6]	G	A	3.761e^-4	0.934	INTERGENIC
X	2237083	X_2237083_SNP [dm3] X_2343050_SNP [dm6]	C	T	3.774e^-4	0.934	SYNONYMOUS_CODING phl DOWNSTREAM mRpL14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	6881484	X_6881484_SNP [dm3] X_6987451_SNP [dm6]	T	A	3.776e^-4	0.934	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18165589	2R_18165589_SNP [dm3] 2R_22278084_SNP [dm6]	C	T	3.779e^-4	0.934	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10013000	2L_10013000_SNP [dm3] 2L_10013000_SNP [dm6]	G	C	3.792e^-4	0.934	UTR_3_PRIME Trp1 DOWNSTREAM Trp1 & 1 other
3R	9572632	3R_9572632_SNP [dm3] 3R_13746910_SNP [dm6]	T	A	3.795e^-4	0.934	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25214032	3R_25214032_SNP [dm3] 3R_29388310_SNP [dm6]	G	T	3.797e^-4	0.934	INTRON Ptp99A
2R	18165393	2R_18165393_SNP [dm3] 2R_22277888_SNP [dm6]	C	T	3.800e^-4	0.934	INTRON dve	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5510874	3L_5510874_SNP [dm3] 3L_5517774_SNP [dm6]	T	A	3.802e^-4	0.934	INTRON Lkr
2L	9327604	2L_9327604_SNP [dm3] 2L_9327604_SNP [dm6]	G	C	3.803e^-4	0.934	UPSTREAM CG17005 DOWNSTREAM CR45456 & 1 other INTERGENIC
3R	22907692	3R_22907692_SNP [dm3] 3R_27081970_SNP [dm6]	G	C	3.805e^-4	0.934	NON_SYNONYMOUS_CODING CG14257 INTRON CG14257	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12234454	3R_12234454_SNP [dm3] 3R_16408732_SNP [dm6]	G	A	3.806e^-4	0.934	INTERGENIC
2R	10434981	2R_10434981_SNP [dm3] 2R_14547476_SNP [dm6]	T	C	3.808e^-4	0.934	INTRON ttv
3L	7723144	3L_7723144_SNP [dm3] 3L_7730044_SNP [dm6]	G	T	3.811e^-4	0.934	SYNONYMOUS_CODING CG8492 INTRON CG32373
2L	13339688	2L_13339688_SNP [dm3] 2L_13339688_SNP [dm6]	A	T	3.816e^-4	0.934	INTERGENIC
X	4981182	X_4981182_SNP [dm3] X_5087149_SNP [dm6]	C	T	3.819e^-4	0.934	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	13823157	2R_13823157_SNP [dm3] 2R_17935652_SNP [dm6]	C	T	3.829e^-4	0.934	INTERGENIC
2L	5842926	2L_5842926_SNP [dm3] 2L_5842926_SNP [dm6]	A	G	3.836e^-4	0.934	INTRON TrissinR
2L	5842927	2L_5842927_SNP [dm3] 2L_5842927_SNP [dm6]	G	T	3.836e^-4	0.934	INTRON TrissinR
3R	18074802	3R_18074802_SNP [dm3] 3R_22249080_SNP [dm6]	A	T	3.855e^-4	0.934	INTRON SKIP
3R	18126608	3R_18126608_SNP [dm3] 3R_22300886_SNP [dm6]	A	T	3.860e^-4	0.934	INTRON CG7084
2R	11059627	2R_11059627_SNP [dm3] 2R_15172122_SNP [dm6]	C	A	3.862e^-4	0.934	INTRON igl
3R	25312095	3R_25312095_INS [dm3] 3R_29486373_INS [dm6]	T	TTAT	3.876e^-4	0.934	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
3R	10901093	3R_10901093_SNP [dm3] 3R_15075371_SNP [dm6]	C	T	3.876e^-4	0.934	INTRON dpr9
X	18821481	X_18821481_SNP [dm3] X_18927448_SNP [dm6]	G	C	3.894e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7204964	2L_7204964_SNP [dm3] 2L_7204964_SNP [dm6]	T	G	3.894e^-4	0.934	UTR_3_PRIME CG13784 UPSTREAM CG4502 DOWNSTREAM CG13784
X	16315656	X_16315656_SNP [dm3] X_16421623_SNP [dm6]	T	C	3.897e^-4	0.934	INTRON AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18109114	3R_18109114_SNP [dm3] 3R_22283392_SNP [dm6]	G	T	3.898e^-4	0.934	INTRON SKIP
3L	4614595	3L_4614595_DEL [dm3] 3L_4614595_DEL [dm6]	TGACA	T	3.898e^-4	0.934	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	4614601	3L_4614601_SNP [dm3] 3L_4614601_SNP [dm6]	A	T	3.898e^-4	0.934	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	19627082	2R_19627082_SNP [dm3] 2R_23739559_SNP [dm6]	C	T	3.902e^-4	0.934	INTRON egl
3L	8959133	3L_8959133_SNP [dm3] 3L_8966033_SNP [dm6]	A	T	3.910e^-4	0.934	SYNONYMOUS_CODING CG5653 UPSTREAM CG5021	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	13736650	3R_13736650_SNP [dm3] 3R_17910928_SNP [dm6]	A	G	3.911e^-4	0.934	UPSTREAM CG43445 INTRON Rim
3L	14872773	3L_14872773_SNP [dm3] 3L_14879673_SNP [dm6]	A	G	3.912e^-4	0.934	INTRON CG17839
X	9908405	X_9908405_SNP [dm3] X_10014372_SNP [dm6]	A	G	3.933e^-4	0.934	DOWNSTREAM CG2990 INTERGENIC
X	2247468	X_2247468_SNP [dm3] X_2353435_SNP [dm6]	A	C	3.935e^-4	0.934	INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	21761592	2L_21761592_SNP [dm3] 2L_21761592_SNP [dm6]	T	G	3.938e^-4	0.934	DOWNSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10948500	3R_10948500_SNP [dm3] 3R_15122778_SNP [dm6]	G	T	3.949e^-4	0.934	INTRON CG42788
3R	14751655	3R_14751655_SNP [dm3] 3R_18925933_SNP [dm6]	C	T	3.974e^-4	0.934	NON_SYNONYMOUS_CODING Xrp1	TF binding site mE1_TFBS_cad
2L	12416860	2L_12416860_SNP [dm3] 2L_12416860_SNP [dm6]	A	G	3.987e^-4	0.934	INTRON vir-1
2L	16293617	2L_16293617_SNP [dm3] 2L_16293617_SNP [dm6]	C	A	4.000e^-4	0.934	UPSTREAM CG13258 & 1 other EXON CR44899
2L	8915112	2L_8915112_SNP [dm3] 2L_8915112_SNP [dm6]	T	C	4.007e^-4	0.934	INTRON CG34398
3R	12813021	3R_12813021_SNP [dm3] 3R_16987299_SNP [dm6]	C	T	4.015e^-4	0.934	UPSTREAM CG18622 INTRON CG18622
2L	15004944	2L_15004944_MNP [dm3] 2L_15004944_MNP [dm6]	AAC	TGA	4.015e^-4	0.934	UPSTREAM dyn-p25 INTERGENIC	transposable element FlyBase
X	6881440	X_6881440_SNP [dm3] X_6987407_SNP [dm6]	G	C	4.027e^-4	0.934	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20205970	2R_20205970_DEL [dm3] 2R_24318447_DEL [dm6]	TG	A	4.040e^-4	0.934	INTERGENIC
X	8217123	X_8217123_SNP [dm3] X_8323090_SNP [dm6]	C	T	4.045e^-4	0.934	INTRON nAChRalpha3
3L	21445604	3L_21445604_SNP [dm3] 3L_21452504_SNP [dm6]	G	T	4.046e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15689051	3L_15689051_INS [dm3] 3L_15695951_INS [dm6]	C	CCGT	4.050e^-4	0.934	INTERGENIC
X	8217131	X_8217131_SNP [dm3] X_8323098_SNP [dm6]	T	A	4.050e^-4	0.934	INTRON nAChRalpha3
2L	5745538	2L_5745538_SNP [dm3] 2L_5745538_SNP [dm6]	G	C	4.058e^-4	0.934	UPSTREAM CG11029 INTRON CG11030
2R	7601146	2R_7601146_SNP [dm3] 2R_11713641_SNP [dm6]	T	A	4.058e^-4	0.934	INTRON pyr
3R	11582820	3R_11582820_INS [dm3] 3R_15757098_INS [dm6]	T	GTTGG	4.060e^-4	0.934	INTERGENIC
X	6781399	X_6781399_SNP [dm3] X_6887366_SNP [dm6]	C	T	4.064e^-4	0.934	INTERGENIC
2R	19521671	2R_19521671_SNP [dm3] 2R_23634148_SNP [dm6]	A	G	4.074e^-4	0.934	INTRON retn	TF binding site mE1_TFBS_cad
3R	12794844	3R_12794844_SNP [dm3] 3R_16969122_SNP [dm6]	A	T	4.078e^-4	0.934	INTRON Abd-B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8217198	X_8217198_SNP [dm3] X_8323165_SNP [dm6]	A	C	4.079e^-4	0.934	INTRON nAChRalpha3
X	14886271	X_14886271_SNP [dm3] X_14992238_SNP [dm6]	C	T	4.083e^-4	0.934	INTRON eag
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	4.087e^-4	0.934	INTRON CG5065	TF binding site mE1_TFBS_cad
2L	4573726	2L_4573726_SNP [dm3] 2L_4573726_SNP [dm6]	T	A	4.089e^-4	0.934	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17275347	3L_17275347_SNP [dm3] 3L_17282247_SNP [dm6]	T	C	4.095e^-4	0.934	INTERGENIC
3L	661993	3L_661993_SNP [dm3] 3L_661993_SNP [dm6]	G	T	4.095e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18498768	X_18498768_SNP [dm3] X_18604735_SNP [dm6]	A	T	4.098e^-4	0.934	INTERGENIC
3R	5915435	3R_5915435_SNP [dm3] 3R_10089713_SNP [dm6]	A	G	4.106e^-4	0.934	EXON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11879096	2L_11879096_SNP [dm3] 2L_11879096_SNP [dm6]	T	A	4.106e^-4	0.934	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22376442	3R_22376442_SNP [dm3] 3R_26550720_SNP [dm6]	T	A	4.113e^-4	0.934	INTRON scrib	TF binding site BDTNP1_TFBS_twi
2R	13650103	2R_13650103_SNP [dm3] 2R_17762598_SNP [dm6]	T	A	4.114e^-4	0.934	SYNONYMOUS_CODING CG5009
2L	5506199	2L_5506199_SNP [dm3] 2L_5506199_SNP [dm6]	G	A	4.118e^-4	0.934	INTERGENIC
2R	2474391	2R_2474391_SNP [dm3] 2R_6586886_SNP [dm6]	G	A	4.121e^-4	0.934	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	13378675	X_13378675_SNP [dm3] X_13484642_SNP [dm6]	G	C	4.125e^-4	0.934	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25233751	3R_25233751_SNP [dm3] 3R_29408029_SNP [dm6]	G	A	4.125e^-4	0.934	INTRON Ptp99A	TF binding site mE1_TFBS_inv
2L	3887955	2L_3887955_SNP [dm3] 2L_3887955_SNP [dm6]	T	C	4.143e^-4	0.934	INTRON capu
3R	15404942	3R_15404942_SNP [dm3] 3R_19579220_SNP [dm6]	A	C	4.151e^-4	0.934	INTRON Dys
3L	5591956	3L_5591956_SNP [dm3] 3L_5598856_SNP [dm6]	G	T	4.153e^-4	0.934	SYNONYMOUS_CODING CG10591	TF binding site mE1_TFBS_chinmo
2L	1554719	2L_1554719_SNP [dm3] 2L_1554719_SNP [dm6]	G	A	4.157e^-4	0.934	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
X	2236839	X_2236839_SNP [dm3] X_2342806_SNP [dm6]	T	G	4.164e^-4	0.934	INTRON phl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7743768	3L_7743768_SNP [dm3] 3L_7750668_SNP [dm6]	C	T	4.172e^-4	0.934	DOWNSTREAM CG13685 INTRON CG32373
3R	18229569	3R_18229569_DEL [dm3] 3R_22403847_DEL [dm6]	TCGCTTTGATTA...	T	4.182e^-4	0.934	INTRON CG13856
3R	18229582	3R_18229582_DEL [dm3] 3R_22403860_DEL [dm6]	CGTGCA	C	4.182e^-4	0.934	INTRON CG13856
2L	9235815	2L_9235815_SNP [dm3] 2L_9235815_SNP [dm6]	T	A	4.185e^-4	0.934	DOWNSTREAM tRNA:CR31885 INTRON tai
3R	19424603	3R_19424603_SNP [dm3] 3R_23598881_SNP [dm6]	G	C	4.190e^-4	0.934	NON_SYNONYMOUS_CODING CG10183
3R	12812981	3R_12812981_SNP [dm3] 3R_16987259_SNP [dm6]	G	T	4.213e^-4	0.934	UPSTREAM CG18622 INTRON CG18622
3R	15917389	3R_15917389_SNP [dm3] 3R_20091667_SNP [dm6]	G	T	4.214e^-4	0.934	INTERGENIC
X	8217196	X_8217196_INS [dm3] X_8323163_INS [dm6]	T	TGTAGACAAGTTT...	4.216e^-4	0.934	INTRON nAChRalpha3
3L	6667440	3L_6667440_DEL [dm3] 3L_6674340_DEL [dm6]	AATGGCGATGGTGATGGCG...	A	4.221e^-4	0.934	INTERGENIC
2L	8871338	2L_8871338_SNP [dm3] 2L_8871338_SNP [dm6]	C	T	4.223e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_sens
3R	8185129	3R_8185129_SNP [dm3] 3R_12359407_SNP [dm6]	T	A	4.224e^-4	0.934	UPSTREAM CG4115 INTERGENIC
X	13444233	X_13444233_SNP [dm3] X_13550200_SNP [dm6]	C	G	4.227e^-4	0.934	INTERGENIC
X	16078546	X_16078546_SNP [dm3] X_16184513_SNP [dm6]	G	A	4.232e^-4	0.934	INTERGENIC
3L	1489999	3L_1489999_SNP [dm3] 3L_1489999_SNP [dm6]	A	G	4.241e^-4	0.934	UPSTREAM stet DOWNSTREAM snoRNA:Psi28S-2622 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	5300384	2R_5300384_SNP [dm3] 2R_9412879_SNP [dm6]	T	C	4.243e^-4	0.934	INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16293942	2L_16293942_SNP [dm3] 2L_16293942_SNP [dm6]	G	A	4.246e^-4	0.934	UPSTREAM CG13258 & 2 others INTERGENIC
X	2245881	X_2245881_SNP [dm3] X_2351848_SNP [dm6]	A	C	4.250e^-4	0.934	INTRON ptr
3R	10896099	3R_10896099_SNP [dm3] 3R_15070377_SNP [dm6]	C	A	4.251e^-4	0.934	INTRON dpr9
2L	11645904	2L_11645904_SNP [dm3] 2L_11645904_SNP [dm6]	A	G	4.255e^-4	0.934	INTRON CG6614
3R	16327554	3R_16327554_SNP [dm3] 3R_20501832_SNP [dm6]	C	G	4.264e^-4	0.934	SPLICE_SITE_REGION Dic2 UTR_5_PRIME Dic2 UPSTREAM Dic2
3L	8964200	3L_8964200_SNP [dm3] 3L_8971100_SNP [dm6]	C	T	4.264e^-4	0.934	DOWNSTREAM pix INTRON CG5026
2R	9766827	2R_9766827_SNP [dm3] 2R_13879322_SNP [dm6]	A	G	4.274e^-4	0.934	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8393760	X_8393760_INS [dm3] X_8499727_INS [dm6]	A	ACATA	4.285e^-4	0.934	INTRON CG33181
2L	9787273	2L_9787273_SNP [dm3] 2L_9787273_SNP [dm6]	C	A	4.288e^-4	0.934	DOWNSTREAM CR18854 INTRON IP3K1	TF binding site mE1_TFBS_cad
3L	19638340	3L_19638340_SNP [dm3] 3L_19645240_SNP [dm6]	G	A	4.301e^-4	0.934	INTERGENIC
2R	4558468	2R_4558468_SNP [dm3] 2R_8670963_SNP [dm6]	T	C	4.303e^-4	0.934	INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12488121	3L_12488121_SNP [dm3] 3L_12495021_SNP [dm6]	A	T	4.303e^-4	0.934	INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18251935	2R_18251935_SNP [dm3] 2R_22364430_SNP [dm6]	A	G	4.307e^-4	0.934	INTRON Liprin-gamma
2L	5842446	2L_5842446_SNP [dm3] 2L_5842446_SNP [dm6]	A	T	4.310e^-4	0.934	INTRON TrissinR
2L	14242662	2L_14242662_SNP [dm3] 2L_14242662_SNP [dm6]	T	C	4.313e^-4	0.934	DOWNSTREAM CR44216 INTERGENIC
3R	25745178	3R_25745178_SNP [dm3] 3R_29919456_SNP [dm6]	G	A	4.314e^-4	0.934	SYNONYMOUS_CODING trp
2R	17894978	2R_17894978_SNP [dm3] 2R_22007473_SNP [dm6]	T	C	4.318e^-4	0.934	INTRON CG34370
2L	9541533	2L_9541533_SNP [dm3] 2L_9541533_SNP [dm6]	T	C	4.323e^-4	0.934	SYNONYMOUS_CODING CG17855
X	9081243	X_9081243_DEL [dm3] X_9187210_DEL [dm6]	AG	A	4.330e^-4	0.934	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl
2L	16379028	2L_16379028_SNP [dm3] 2L_16379028_SNP [dm6]	A	T	4.334e^-4	0.934	INTERGENIC
X	8518791	X_8518791_SNP [dm3] X_8624758_SNP [dm6]	G	A	4.338e^-4	0.934	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	6883413	X_6883413_SNP [dm3] X_6989380_SNP [dm6]	T	A	4.340e^-4	0.934	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1340982	3L_1340982_SNP [dm3] 3L_1340982_SNP [dm6]	C	T	4.342e^-4	0.934	NON_SYNONYMOUS_CODING CG2199	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20370792	2L_20370792_SNP [dm3] 2L_20370792_SNP [dm6]	T	G	4.347e^-4	0.934	INTERGENIC
X	6881511	X_6881511_SNP [dm3] X_6987478_SNP [dm6]	A	T	4.348e^-4	0.934	DOWNSTREAM bou INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2202588	3L_2202588_SNP [dm3] 3L_2202588_SNP [dm6]	A	G	4.349e^-4	0.934	INTERGENIC
2L	20416480	2L_20416480_SNP [dm3] 2L_20416480_SNP [dm6]	G	A	4.351e^-4	0.934	SYNONYMOUS_CODING CG10949 UPSTREAM Arpc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5300533	2R_5300533_SNP [dm3] 2R_9413028_SNP [dm6]	C	T	4.353e^-4	0.934	INTRON wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1930819	3L_1930819_SNP [dm3] 3L_1930819_SNP [dm6]	C	A	4.360e^-4	0.934	INTRON Dbx
2R	6799075	2R_6799075_SNP [dm3] 2R_10911570_SNP [dm6]	C	T	4.367e^-4	0.934	INTERGENIC
2R	10634964	2R_10634964_SNP [dm3] 2R_14747459_SNP [dm6]	A	G	4.370e^-4	0.934	SYNONYMOUS_CODING AttA DOWNSTREAM Dro
2L	12247227	2L_12247227_SNP [dm3] 2L_12247227_SNP [dm6]	A	G	4.371e^-4	0.934	INTRON aret
3R	12813060	3R_12813060_SNP [dm3] 3R_16987338_SNP [dm6]	T	C	4.377e^-4	0.934	UPSTREAM CG18622 INTRON CG18622
X	10067892	X_10067892_SNP [dm3] X_10173859_SNP [dm6]	C	T	4.386e^-4	0.934	INTRON CG43902 & 1 other
2R	10634960	2R_10634960_INS [dm3] 2R_14747455_INS [dm6]	C	CTTCACTTCC	4.389e^-4	0.934	DOWNSTREAM Dro
3R	26309919	3R_26309919_SNP [dm3] 3R_30484197_SNP [dm6]	A	G	4.393e^-4	0.934	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19434847	2R_19434847_SNP [dm3] 2R_23547324_SNP [dm6]	T	C	4.396e^-4	0.934	UPSTREAM levy INTRON wmd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	20351369	2L_20351369_SNP [dm3] 2L_20351369_SNP [dm6]	G	A	4.400e^-4	0.934	INTRON RtGEF
2L	13262071	2L_13262071_SNP [dm3] 2L_13262071_SNP [dm6]	C	G	4.401e^-4	0.934	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
X	16315533	X_16315533_SNP [dm3] X_16421500_SNP [dm6]	G	A	4.405e^-4	0.934	INTRON AnxB11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4301363	3L_4301363_INS [dm3] 3L_4301363_INS [dm6]	T	TT	4.420e^-4	0.934	INTRON dyl
3R	19801873	3R_19801873_SNP [dm3] 3R_23976151_SNP [dm6]	A	C	4.423e^-4	0.934	INTRON CG31140	TF binding site mE1_TFBS_chinmo
3L	18837068	3L_18837068_DEL [dm3] 3L_18843968_DEL [dm6]	ATACT	A	4.424e^-4	0.934	INTRON Indy
2L	8936566	2L_8936566_SNP [dm3] 2L_8936566_SNP [dm6]	T	C	4.424e^-4	0.934	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12788303	2R_12788303_SNP [dm3] 2R_16900798_SNP [dm6]	A	T	4.431e^-4	0.934	INTRON inaC
2L	11233243	2L_11233243_SNP [dm3] 2L_11233243_SNP [dm6]	C	A	4.435e^-4	0.934	INTRON ab
X	13622840	X_13622840_SNP [dm3] X_13728807_SNP [dm6]	G	T	4.435e^-4	0.934	SYNONYMOUS_CODING g	TF binding site mE1_TFBS_HSA
3R	20601145	3R_20601145_SNP [dm3] 3R_24775423_SNP [dm6]	C	T	4.440e^-4	0.934	INTRON CG42331
X	10002820	X_10002820_SNP [dm3] X_10108787_SNP [dm6]	G	C	4.444e^-4	0.934	INTRON RhoU
3L	6562564	3L_6562564_SNP [dm3] 3L_6569464_SNP [dm6]	A	G	4.446e^-4	0.934	INTRON CG18769 & 1 other
3R	5972302	3R_5972302_SNP [dm3] 3R_10146580_SNP [dm6]	T	C	4.460e^-4	0.934	INTRON Invadolysin
3R	10942118	3R_10942118_SNP [dm3] 3R_15116396_SNP [dm6]	G	T	4.467e^-4	0.934	INTRON CG42788
3L	22924052	3L_22924052_SNP [dm3] 3L_22930952_SNP [dm6]	C	A	4.468e^-4	0.934	INTERGENIC
3L	13466486	3L_13466486_SNP [dm3] 3L_13473386_SNP [dm6]	A	G	4.468e^-4	0.934	INTRON CG10089
2R	4558503	2R_4558503_SNP [dm3] 2R_8670998_SNP [dm6]	T	C	4.469e^-4	0.934	INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10996186	3R_10996186_SNP [dm3] 3R_15170464_SNP [dm6]	T	C	4.472e^-4	0.934	DOWNSTREAM Mf INTRON Gyc88E
3R	9863630	3R_9863630_SNP [dm3] 3R_14037908_SNP [dm6]	A	G	4.476e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21874288	X_21874288_SNP [dm3] X_22472452_SNP [dm6]	A	G	4.477e^-4	0.934	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2260633	X_2260633_SNP [dm3] X_2366600_SNP [dm6]	C	G	4.480e^-4	0.934	UPSTREAM ptr DOWNSTREAM PsGEF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12813037	3R_12813037_DEL [dm3] 3R_16987315_DEL [dm6]	TA	T	4.480e^-4	0.934	UPSTREAM CG18622 INTRON CG18622
2L	10688529	2L_10688529_SNP [dm3] 2L_10688529_SNP [dm6]	C	T	4.489e^-4	0.934	DOWNSTREAM CG7294 INTERGENIC
2L	5573814	2L_5573814_SNP [dm3] 2L_5573814_SNP [dm6]	C	A	4.498e^-4	0.934	INTERGENIC
X	15338662	X_15338662_SNP [dm3] X_15444629_SNP [dm6]	T	G	4.500e^-4	0.934	INTERGENIC
2L	13536462	2L_13536462_SNP [dm3] 2L_13536462_SNP [dm6]	T	A	4.512e^-4	0.934	UPSTREAM CG15638 INTRON B4
X	9888650	X_9888650_SNP [dm3] X_9994617_SNP [dm6]	T	C	4.513e^-4	0.934	INTRON CG32694
3R	13661136	3R_13661136_SNP [dm3] 3R_17835414_SNP [dm6]	A	T	4.519e^-4	0.934	INTRON tinc
3L	18207256	3L_18207256_SNP [dm3] 3L_18214156_SNP [dm6]	C	T	4.521e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26808608	3R_26808608_SNP [dm3] 3R_30982886_SNP [dm6]	C	G	4.528e^-4	0.934	INTRON 5-HT7
3L	2905291	3L_2905291_SNP [dm3] 3L_2905291_SNP [dm6]	C	T	4.532e^-4	0.934	INTRON Shab
2L	20418730	2L_20418730_SNP [dm3] 2L_20418730_SNP [dm6]	C	T	4.536e^-4	0.934	UPSTREAM snoRNA:Psi18S-525c & 5 others DOWNSTREAM snoRNA:Psi18S-525a & 1 other INTRON Arpc2 EXON snoRNA:Psi18S-525b	TF binding site mE1_TFBS_zfh1
X	14899569	X_14899569_SNP [dm3] X_15005536_SNP [dm6]	C	T	4.539e^-4	0.934	UTR_3_PRIME eag
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	4.548e^-4	0.934	INTRON CG4502
3R	23178220	3R_23178220_DEL [dm3] 3R_27352498_DEL [dm6]	CG	C	4.551e^-4	0.934	INTRON CG42534
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	4.553e^-4	0.934	SYNONYMOUS_CODING CG16798
2L	6463097	2L_6463097_SNP [dm3] 2L_6463097_SNP [dm6]	A	T	4.564e^-4	0.935	INTRON CG16947	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	4.564e^-4	0.935	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16293955	2L_16293955_SNP [dm3] 2L_16293955_SNP [dm6]	T	G	4.578e^-4	0.936	UPSTREAM CG13258 & 2 others INTERGENIC
3R	25214173	3R_25214173_SNP [dm3] 3R_29388451_SNP [dm6]	C	A	4.595e^-4	0.938	INTRON Ptp99A
2L	8881857	2L_8881857_SNP [dm3] 2L_8881857_SNP [dm6]	A	T	4.597e^-4	0.938	INTERGENIC
2R	7151109	2R_7151109_INS [dm3] 2R_11263604_INS [dm6]	T	TCATT	4.611e^-4	0.938	INTERGENIC
3R	16415378	3R_16415378_SNP [dm3] 3R_20589656_SNP [dm6]	C	A	4.618e^-4	0.938	SYNONYMOUS_CODING Srp72	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26253158	3R_26253158_SNP [dm3] 3R_30427436_SNP [dm6]	G	C	4.618e^-4	0.938	SYNONYMOUS_CODING CG2218	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14128234	3L_14128234_SNP [dm3] 3L_14135134_SNP [dm6]	G	T	4.625e^-4	0.938	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1254037	3L_1254037_SNP [dm3] 3L_1254037_SNP [dm6]	C	T	4.628e^-4	0.938	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
X	2397211	X_2397211_SNP [dm3] X_2503178_SNP [dm6]	G	A	4.635e^-4	0.938	INTRON trol
X	2145214	X_2145214_SNP [dm3] X_2251181_SNP [dm6]	A	G	4.644e^-4	0.938	INTRON CG3191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19912808	X_19912808_SNP [dm3] X_20018775_SNP [dm6]	C	T	4.692e^-4	0.938	INTRON Dop2R
2L	2559851	2L_2559851_SNP [dm3] 2L_2559851_SNP [dm6]	T	C	4.695e^-4	0.938	INTERGENIC
3R	20459127	3R_20459127_SNP [dm3] 3R_24633405_SNP [dm6]	T	C	4.695e^-4	0.938	INTRON atl	TF binding site mE1_TFBS_chinmo
2L	8912423	2L_8912423_SNP [dm3] 2L_8912423_SNP [dm6]	T	A	4.713e^-4	0.938	INTRON CG34398
3R	15917366	3R_15917366_SNP [dm3] 3R_20091644_SNP [dm6]	A	G	4.717e^-4	0.938	INTERGENIC
2L	18974849	2L_18974849_DEL [dm3] 2L_18974849_DEL [dm6]	TAAGT	T	4.725e^-4	0.938	UPSTREAM CG10639 INTRON CG10431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7943598	2R_7943598_SNP [dm3] 2R_12056093_SNP [dm6]	G	C	4.726e^-4	0.938	NON_SYNONYMOUS_CODING Drep-3 UTR_3_PRIME CG44314
3L	1601232	3L_1601232_SNP [dm3] 3L_1601232_SNP [dm6]	C	G	4.728e^-4	0.938	UTR_3_PRIME CG12104 DOWNSTREAM CG13917	TF binding site mE1_TFBS_cad
3L	4514468	3L_4514468_SNP [dm3] 3L_4514468_SNP [dm6]	C	T	4.728e^-4	0.938	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo
3L	17071856	3L_17071856_SNP [dm3] 3L_17078756_SNP [dm6]	T	A	4.730e^-4	0.938	INTRON Rbp6
2R	4558388	2R_4558388_SNP [dm3] 2R_8670883_SNP [dm6]	C	A	4.732e^-4	0.938	INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	22510202	3L_22510202_SNP [dm3] 3L_22517102_SNP [dm6]	C	T	4.735e^-4	0.938	INTERGENIC
3R	21520192	3R_21520192_SNP [dm3] 3R_25694470_SNP [dm6]	G	A	4.735e^-4	0.938	INTERGENIC
2L	15327785	2L_15327785_MNP [dm3] 2L_15327785_MNP [dm6]	CTT	GAA	4.736e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	17439464	X_17439464_INS [dm3] X_17545431_INS [dm6]	T	TT	4.742e^-4	0.938	INTRON CG43658
3R	21520222	3R_21520222_SNP [dm3] 3R_25694500_SNP [dm6]	G	A	4.746e^-4	0.938	INTERGENIC
3R	23775109	3R_23775109_SNP [dm3] 3R_27949387_SNP [dm6]	C	T	4.760e^-4	0.938	SYNONYMOUS_CODING Gp93	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16508059	2R_16508059_SNP [dm3] 2R_20620554_SNP [dm6]	G	T	4.766e^-4	0.938	DOWNSTREAM CG11180 INTRON CG9945
3L	890659	3L_890659_SNP [dm3] 3L_890659_SNP [dm6]	T	C	4.769e^-4	0.938	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_cad
X	2249366	X_2249366_SNP [dm3] X_2355333_SNP [dm6]	T	A	4.773e^-4	0.938	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	10002131	3R_10002131_INS [dm3] 3R_14176409_INS [dm6]	C	CGTATTGCCGT...	4.774e^-4	0.938	UTR_3_PRIME Dop1R1 DOWNSTREAM Dop1R1
2R	10432443	2R_10432443_SNP [dm3] 2R_14544938_SNP [dm6]	T	A	4.777e^-4	0.938	NON_SYNONYMOUS_CODING CG30076 INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7746765	3L_7746765_SNP [dm3] 3L_7753665_SNP [dm6]	A	G	4.777e^-4	0.938	UPSTREAM CG7409 INTRON CG32373
3R	20369060	3R_20369060_SNP [dm3] 3R_24543338_SNP [dm6]	T	A	4.780e^-4	0.938	UTR_5_PRIME CG5789 INTRON CG5789
3R	20369068	3R_20369068_SNP [dm3] 3R_24543346_SNP [dm6]	A	C	4.780e^-4	0.938	UTR_5_PRIME CG5789 INTRON CG5789
3R	15728272	3R_15728272_SNP [dm3] 3R_19902550_SNP [dm6]	T	G	4.782e^-4	0.938	INTRON CG4538	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19179066	2L_19179066_SNP [dm3] 2L_19179066_SNP [dm6]	T	C	4.787e^-4	0.938	UTR_3_PRIME brat DOWNSTREAM CG17568
3R	20011252	3R_20011252_SNP [dm3] 3R_24185530_SNP [dm6]	T	C	4.788e^-4	0.938	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7723567	3L_7723567_SNP [dm3] 3L_7730467_SNP [dm6]	G	T	4.797e^-4	0.938	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9328461	2L_9328461_SNP [dm3] 2L_9328461_SNP [dm6]	G	A	4.797e^-4	0.938	SYNONYMOUS_CODING CG17005 UTR_3_PRIME CG17005 DOWNSTREAM CR45457	TF binding site mE1_TFBS_cad
3L	20246795	3L_20246795_INS [dm3] 3L_20253695_INS [dm6]	T	TT	4.797e^-4	0.938	INTRON rdgC
2L	4450756	2L_4450756_SNP [dm3] 2L_4450756_SNP [dm6]	C	T	4.800e^-4	0.938	INTRON CG15439	TF binding site mE1_TFBS_cad
3L	9964232	3L_9964232_SNP [dm3] 3L_9971132_SNP [dm6]	A	T	4.801e^-4	0.938	DOWNSTREAM CG6674 & 1 other INTERGENIC
3R	12234545	3R_12234545_SNP [dm3] 3R_16408823_SNP [dm6]	A	C	4.802e^-4	0.938	INTERGENIC
3L	11459410	3L_11459410_SNP [dm3] 3L_11466310_SNP [dm6]	T	C	4.806e^-4	0.938	UPSTREAM CG6140 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6764435	2L_6764435_SNP [dm3] 2L_6764435_SNP [dm6]	A	T	4.828e^-4	0.94	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3R	25745839	3R_25745839_SNP [dm3] 3R_29920117_SNP [dm6]	C	T	4.840e^-4	0.94	UTR_5_PRIME trp	TF binding site mE1_TFBS_sens
3L	2849737	3L_2849737_SNP [dm3] 3L_2849737_SNP [dm6]	C	T	4.842e^-4	0.94	INTRON CG43444	TF binding site mE1_TFBS_cad
X	13164914	X_13164914_SNP [dm3] X_13270881_SNP [dm6]	T	A	4.852e^-4	0.94	INTRON HDAC4
2L	9226433	2L_9226433_SNP [dm3] 2L_9226433_SNP [dm6]	T	C	4.862e^-4	0.94	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8924318	2L_8924318_SNP [dm3] 2L_8924318_SNP [dm6]	C	A	4.865e^-4	0.94	INTRON CG34398
X	4470532	X_4470532_SNP [dm3] X_4576499_SNP [dm6]	C	T	4.865e^-4	0.94	INTRON CR32773
3L	13466477	3L_13466477_SNP [dm3] 3L_13473377_SNP [dm6]	T	G	4.866e^-4	0.94	INTRON CG10089
3R	19030759	3R_19030759_SNP [dm3] 3R_23205037_SNP [dm6]	A	G	4.880e^-4	0.94	INTRON cnc	TF binding site mE1_TFBS_cnc
3R	12812890	3R_12812890_SNP [dm3] 3R_16987168_SNP [dm6]	C	T	4.884e^-4	0.94	UPSTREAM CG18622 INTRON CG18622
3L	1519545	3L_1519545_SNP [dm3] 3L_1519545_SNP [dm6]	A	T	4.890e^-4	0.94	INTRON Psa
3L	1400389	3L_1400389_SNP [dm3] 3L_1400389_SNP [dm6]	A	G	4.895e^-4	0.94	SPLICE_SITE_REGION CG32320 INTRON Ptp61F & 1 other
3R	15130637	3R_15130637_SNP [dm3] 3R_19304915_SNP [dm6]	T	C	4.902e^-4	0.94	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	15327756	2L_15327756_SNP [dm3] 2L_15327756_SNP [dm6]	C	A	4.920e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	22951521	3R_22951521_SNP [dm3] 3R_27125799_SNP [dm6]	A	G	4.931e^-4	0.94	SYNONYMOUS_CODING CG6051	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	14672951	3R_14672951_SNP [dm3] 3R_18847229_SNP [dm6]	A	G	4.935e^-4	0.94	INTRON CG18208
X	2246583	X_2246583_SNP [dm3] X_2352550_SNP [dm6]	T	C	4.937e^-4	0.94	INTRON ptr	TF binding site mE1_TFBS_sens
2L	7924461	2L_7924461_SNP [dm3] 2L_7924461_SNP [dm6]	C	T	4.940e^-4	0.94	INTRON Snoo
3L	7473292	3L_7473292_SNP [dm3] 3L_7480192_SNP [dm6]	C	A	4.952e^-4	0.94	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7604946	3L_7604946_INS [dm3] 3L_7611846_INS [dm6]	T	TT	4.956e^-4	0.94	INTRON CG33275
X	11779569	X_11779569_DEL [dm3] X_11885536_DEL [dm6]	AA	A	4.973e^-4	0.94	UPSTREAM CG10353 INTRON CG10353
2R	17793991	2R_17793991_SNP [dm3] 2R_21906486_SNP [dm6]	T	G	4.974e^-4	0.94	INTRON Fili
2L	8889235	2L_8889235_INS [dm3] 2L_8889235_INS [dm6]	G	GAAATGTACTTTATGT...	4.975e^-4	0.94	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	15623960	2L_15623960_SNP [dm3] 2L_15623960_SNP [dm6]	T	A	4.987e^-4	0.94	UPSTREAM Or35a INTERGENIC
3L	6383872	3L_6383872_SNP [dm3] 3L_6390772_SNP [dm6]	T	G	4.988e^-4	0.94	INTERGENIC
2L	15771643	2L_15771643_SNP [dm3] 2L_15771643_SNP [dm6]	T	G	4.989e^-4	0.94	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80	TF binding site BDTNP1_TFBS_dl
2R	19832932	2R_19832932_SNP [dm3] 2R_23945409_SNP [dm6]	T	A	4.992e^-4	0.94	INTRON Galphas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12682295	2L_12682295_SNP [dm3] 2L_12682295_SNP [dm6]	T	C	4.993e^-4	0.94	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	20368976	3R_20368976_SNP [dm3] 3R_24543254_SNP [dm6]	C	T	5.002e^-4	0.94	INTRON CG5789
2R	2472397	2R_2472397_SNP [dm3] 2R_6584892_SNP [dm6]	G	A	5.005e^-4	0.94	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	23643497	3R_23643497_SNP [dm3] 3R_27817775_SNP [dm6]	T	A	5.012e^-4	0.94	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17783938	2R_17783938_SNP [dm3] 2R_21896433_SNP [dm6]	C	T	5.014e^-4	0.94	INTRON Fili	TF binding site BDTNP1_TFBS_twi
2L	2670725	2L_2670725_SNP [dm3] 2L_2670725_SNP [dm6]	T	A	5.015e^-4	0.94	UPSTREAM Gr23a INTRON Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	5842684	2L_5842684_SNP [dm3] 2L_5842684_SNP [dm6]	G	C	5.019e^-4	0.94	INTRON TrissinR
2L	9895137	2L_9895137_SNP [dm3] 2L_9895137_SNP [dm6]	T	C	5.019e^-4	0.94	UPSTREAM snoRNA:U14:30Ea & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	15189378	X_15189378_SNP [dm3] X_15295345_SNP [dm6]	A	T	5.021e^-4	0.94	NON_SYNONYMOUS_CODING CG5877	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	8868861	2L_8868861_DEL [dm3] 2L_8868861_DEL [dm6]	ATATTCATCTAA...	A	5.022e^-4	0.94	DOWNSTREAM CR44414 INTERGENIC
2L	14326995	2L_14326995_SNP [dm3] 2L_14326995_SNP [dm6]	G	A	5.028e^-4	0.94	SYNONYMOUS_CODING wb DOWNSTREAM wb
2L	20313551	2L_20313551_SNP [dm3] 2L_20313551_SNP [dm6]	G	T	5.036e^-4	0.94	INTRON spir

By genomic position
Variant impact
Gene name

sd_StarvationRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results