DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.231e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0809

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.708	0.0998

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1732 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	3574775	2L_3574775_SNP [dm3] 2L_3574775_SNP [dm6]	T	C	1.784e^-6	0.731	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
2R	2462112	2R_2462112_SNP [dm3] 2R_6574607_SNP [dm6]	G	A	1.853e^-6	0.731	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4183482	3L_4183482_SNP [dm3] 3L_4183482_SNP [dm6]	A	G	1.984e^-6	0.731	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2464467	2R_2464467_SNP [dm3] 2R_6576962_SNP [dm6]	C	G	2.416e^-6	0.731	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2479376	2R_2479376_SNP [dm3] 2R_6591871_SNP [dm6]	G	T	2.514e^-6	0.731	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2452760	2R_2452760_DEL [dm3] 2R_6565255_DEL [dm6]	TAG	T	2.630e^-6	0.731	INTRON jing
2R	2475086	2R_2475086_SNP [dm3] 2R_6587581_SNP [dm6]	C	A	3.034e^-6	0.731	INTRON jing
2R	2477950	2R_2477950_SNP [dm3] 2R_6590445_SNP [dm6]	C	A	3.119e^-6	0.731	INTRON jing	TF binding site mE1_TFBS_HSA
3L	4477110	3L_4477110_SNP [dm3] 3L_4477110_SNP [dm6]	C	A	3.815e^-6	0.795	INTERGENIC
2R	2456244	2R_2456244_SNP [dm3] 2R_6568739_SNP [dm6]	G	A	4.987e^-6	0.864	INTRON jing	TF binding site BDTNP1_TFBS_twi
2R	11036971	2R_11036971_SNP [dm3] 2R_15149466_SNP [dm6]	C	T	5.106e^-6	0.864	UTR_3_PRIME CG7544
2R	1770880	2R_1770880_SNP [dm3] 2R_5883375_SNP [dm6]	C	T	5.527e^-6	0.864	INTERGENIC
2R	2448627	2R_2448627_DEL [dm3] 2R_6561122_DEL [dm6]	CAGTT	C	6.325e^-6	0.904	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2464017	2R_2464017_SNP [dm3] 2R_6576512_SNP [dm6]	T	G	6.961e^-6	0.904	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2574462	X_2574462_SNP [dm3] X_2680429_SNP [dm6]	T	A	7.226e^-6	0.904	UTR_3_PRIME HLH3B DOWNSTREAM sgg	TF binding site mE1_TFBS_chinmo
2R	19493762	2R_19493762_SNP [dm3] 2R_23606239_SNP [dm6]	A	T	7.957e^-6	0.933	SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo
3R	13409145	3R_13409145_SNP [dm3] 3R_17583423_SNP [dm6]	T	C	8.805e^-6	0.972	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2456162	2R_2456162_SNP [dm3] 2R_6568657_SNP [dm6]	G	A	9.600e^-6	0.98	INTRON jing
2R	15962887	2R_15962887_SNP [dm3] 2R_20075382_SNP [dm6]	C	A	1.073e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11037016	2R_11037016_SNP [dm3] 2R_15149511_SNP [dm6]	C	T	1.090e^-5	0.98	UTR_3_PRIME CG7544
3L	14247280	3L_14247280_SNP [dm3] 3L_14254180_SNP [dm6]	C	G	1.097e^-5	0.98	INTERGENIC
2R	18867025	2R_18867025_SNP [dm3] 2R_22979502_SNP [dm6]	G	A	1.157e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19125779	X_19125779_SNP [dm3] X_19231746_SNP [dm6]	G	A	1.208e^-5	0.985	INTRON CG7884
2L	15566961	2L_15566961_SNP [dm3] 2L_15566961_SNP [dm6]	C	G	1.324e^-5	1	INTRON kek3
3L	21293167	3L_21293167_SNP [dm3] 3L_21300067_SNP [dm6]	T	A	1.338e^-5	1	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17306162	X_17306162_SNP [dm3] X_17412129_SNP [dm6]	G	A	1.514e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	13916895	3L_13916895_SNP [dm3] 3L_13923795_SNP [dm6]	T	A	1.532e^-5	1	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	2042573	2R_2042573_SNP [dm3] 2R_6155068_SNP [dm6]	A	C	1.568e^-5	1	INTRON EcR
2R	14662987	2R_14662987_SNP [dm3] 2R_18775482_SNP [dm6]	G	C	1.891e^-5	1	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2R	8174686	2R_8174686_SNP [dm3] 2R_12287181_SNP [dm6]	G	A	1.954e^-5	1	INTRON CG42700
2R	2475994	2R_2475994_SNP [dm3] 2R_6588489_SNP [dm6]	G	A	2.016e^-5	1	INTRON jing
3R	23814659	3R_23814659_DEL [dm3] 3R_27988937_DEL [dm6]	TAC	T	2.030e^-5	1	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14662170	2R_14662170_SNP [dm3] 2R_18774665_SNP [dm6]	T	C	2.098e^-5	1	UTR_3_PRIME Mctp UPSTREAM CR43964
2R	9979836	2R_9979836_SNP [dm3] 2R_14092331_SNP [dm6]	T	C	2.144e^-5	1	UTR_5_PRIME Prosap DOWNSTREAM CG42288
3R	10419106	3R_10419106_SNP [dm3] 3R_14593384_SNP [dm6]	G	A	2.157e^-5	1	INTRON stumps	TF binding site mE1_TFBS_cad
3R	11702511	3R_11702511_SNP [dm3] 3R_15876789_SNP [dm6]	G	A	2.198e^-5	1	UPSTREAM CG31183 INTERGENIC
3L	4183512	3L_4183512_SNP [dm3] 3L_4183512_SNP [dm6]	T	C	2.206e^-5	1	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14775640	2L_14775640_SNP [dm3] 2L_14775640_SNP [dm6]	A	C	2.387e^-5	1	UPSTREAM CG4650 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	1770272	2R_1770272_SNP [dm3] 2R_5882767_SNP [dm6]	C	T	2.420e^-5	1	INTERGENIC
2R	11478154	2R_11478154_DEL [dm3] 2R_15590649_DEL [dm6]	GGAA	G	2.439e^-5	1	INTERGENIC
2L	10645358	2L_10645358_SNP [dm3] 2L_10645358_SNP [dm6]	G	A	2.507e^-5	1	INTRON CG18284
2R	17808438	2R_17808438_SNP [dm3] 2R_21920933_SNP [dm6]	G	A	2.529e^-5	1	INTRON Fili	TF binding site mE1_TFBS_inv
3R	10987229	3R_10987229_SNP [dm3] 3R_15161507_SNP [dm6]	C	T	2.547e^-5	1	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	2598907	3L_2598907_SNP [dm3] 3L_2598907_SNP [dm6]	A	G	2.562e^-5	1	SYNONYMOUS_CODING CG12182 UPSTREAM CG16985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	10993104	3R_10993104_SNP [dm3] 3R_15167382_SNP [dm6]	A	C	2.616e^-5	1	INTRON Gyc88E
2L	7241988	2L_7241988_SNP [dm3] 2L_7241988_SNP [dm6]	T	A	2.700e^-5	1	INTRON Ndae1
X	9661767	X_9661767_SNP [dm3] X_9767734_SNP [dm6]	G	A	2.750e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15519548	2L_15519548_SNP [dm3] 2L_15519548_SNP [dm6]	G	T	2.810e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	16409335	2R_16409335_SNP [dm3] 2R_20521830_SNP [dm6]	G	A	2.840e^-5	1	INTERGENIC
3R	10993084	3R_10993084_DEL [dm3] 3R_15167362_DEL [dm6]	TTCATTAAAACTTAATAA...	T	2.859e^-5	1	INTRON Gyc88E
3R	10993078	3R_10993078_INS [dm3] 3R_15167356_INS [dm6]	T	TGCATTC	2.898e^-5	1	INTRON Gyc88E
X	14381548	X_14381548_SNP [dm3] X_14487515_SNP [dm6]	G	A	3.001e^-5	1	INTERGENIC
2R	10473003	2R_10473003_SNP [dm3] 2R_14585498_SNP [dm6]	A	T	3.134e^-5	1	UTR_3_PRIME ttv DOWNSTREAM ttv
2R	11037110	2R_11037110_SNP [dm3] 2R_15149605_SNP [dm6]	C	T	3.163e^-5	1	UTR_3_PRIME CG7544
2R	17808517	2R_17808517_SNP [dm3] 2R_21921012_SNP [dm6]	C	T	3.180e^-5	1	INTRON Fili	TF binding site mE1_TFBS_inv
2R	2458135	2R_2458135_SNP [dm3] 2R_6570630_SNP [dm6]	T	C	3.246e^-5	1	INTRON jing	transposable element FlyBase
2R	19493837	2R_19493837_SNP [dm3] 2R_23606314_SNP [dm6]	A	G	3.281e^-5	1	SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo
3R	19186213	3R_19186213_SNP [dm3] 3R_23360491_SNP [dm6]	A	C	3.335e^-5	1	DOWNSTREAM RpS3 INTERGENIC
2L	12747923	2L_12747923_SNP [dm3] 2L_12747923_SNP [dm6]	C	A	3.466e^-5	1	INTERGENIC
3L	21322025	3L_21322025_SNP [dm3] 3L_21328925_SNP [dm6]	T	A	3.523e^-5	1	INTRON Rab26
2L	15519540	2L_15519540_SNP [dm3] 2L_15519540_SNP [dm6]	A	T	3.594e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	3518882	3L_3518882_SNP [dm3] 3L_3518882_SNP [dm6]	C	T	3.639e^-5	1	INTRON Eip63E
2R	4197946	2R_4197946_SNP [dm3] 2R_8310441_SNP [dm6]	T	A	3.728e^-5	1	DOWNSTREAM CR44449 & 1 other INTERGENIC
3L	21294804	3L_21294804_SNP [dm3] 3L_21301704_SNP [dm6]	T	G	3.756e^-5	1	DOWNSTREAM CG11309 & 1 other EXON CR45432
2R	2475256	2R_2475256_SNP [dm3] 2R_6587751_SNP [dm6]	C	A	3.767e^-5	1	INTRON jing
X	14381552	X_14381552_SNP [dm3] X_14487519_SNP [dm6]	C	T	3.779e^-5	1	INTERGENIC
X	14381553	X_14381553_SNP [dm3] X_14487520_SNP [dm6]	T	C	3.779e^-5	1	INTERGENIC
3L	12563213	3L_12563213_SNP [dm3] 3L_12570113_SNP [dm6]	C	T	3.865e^-5	1	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8076340	3L_8076340_SNP [dm3] 3L_8083240_SNP [dm6]	T	C	3.900e^-5	1	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
X	16356723	X_16356723_SNP [dm3] X_16462690_SNP [dm6]	T	A	3.900e^-5	1	UTR_3_PRIME para DOWNSTREAM para	TF binding site mE1_TFBS_HSA
3R	13409127	3R_13409127_SNP [dm3] 3R_17583405_SNP [dm6]	G	A	4.031e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4183449	3L_4183449_SNP [dm3] 3L_4183449_SNP [dm6]	G	A	4.480e^-5	1	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4576413	2L_4576413_SNP [dm3] 2L_4576413_SNP [dm6]	T	A	4.550e^-5	1	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10472994	2R_10472994_DEL [dm3] 2R_14585489_DEL [dm6]	ACA	A	4.560e^-5	1	UTR_3_PRIME ttv DOWNSTREAM ttv
3L	3580697	3L_3580697_SNP [dm3] 3L_3580697_SNP [dm6]	C	T	4.574e^-5	1	INTRON Eip63E
3L	21280700	3L_21280700_SNP [dm3] 3L_21287600_SNP [dm6]	G	T	4.673e^-5	1	SYNONYMOUS_CODING pzg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1697567	3L_1697567_SNP [dm3] 3L_1697567_SNP [dm6]	T	G	4.681e^-5	1	INTRON CG7991
3L	12183025	3L_12183025_SNP [dm3] 3L_12189925_SNP [dm6]	T	C	4.717e^-5	1	NON_SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
2L	17696923	2L_17696923_SNP [dm3] 2L_17696923_SNP [dm6]	A	G	4.789e^-5	1	INTRON CadN
3R	23814644	3R_23814644_DEL [dm3] 3R_27988922_DEL [dm6]	TCGAAAACCTA...	T	5.089e^-5	1	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10988000	3R_10988000_SNP [dm3] 3R_15162278_SNP [dm6]	T	C	5.101e^-5	1	INTRON Gyc88E
2R	2464170	2R_2464170_INS [dm3] 2R_6576665_INS [dm6]	T	TA	5.173e^-5	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16850678	2R_16850678_SNP [dm3] 2R_20963173_SNP [dm6]	C	A	5.193e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2784057	X_2784057_SNP [dm3] X_2890024_SNP [dm6]	G	T	5.240e^-5	1	UPSTREAM CG3526 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3371655	2L_3371655_SNP [dm3] 2L_3371655_SNP [dm6]	T	G	5.328e^-5	1	UPSTREAM CG34394 INTRON CG34394
X	12396290	X_12396290_SNP [dm3] X_12502257_SNP [dm6]	G	C	5.361e^-5	1	INTRON CG2556
3L	10780422	3L_10780422_SNP [dm3] 3L_10787322_SNP [dm6]	A	G	5.408e^-5	1	INTERGENIC
3L	10347596	3L_10347596_SNP [dm3] 3L_10354496_SNP [dm6]	G	T	5.432e^-5	1	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
2R	2475713	2R_2475713_SNP [dm3] 2R_6588208_SNP [dm6]	G	A	5.472e^-5	1	INTRON jing
3L	15749879	3L_15749879_SNP [dm3] 3L_15756779_SNP [dm6]	G	A	5.556e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3575104	2L_3575104_SNP [dm3] 2L_3575104_SNP [dm6]	A	G	5.567e^-5	1	UPSTREAM CR43822 INTERGENIC
2R	11037031	2R_11037031_SNP [dm3] 2R_15149526_SNP [dm6]	T	C	5.573e^-5	1	UTR_3_PRIME CG7544
3R	23814656	3R_23814656_SNP [dm3] 3R_27988934_SNP [dm6]	G	C	5.591e^-5	1	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12303850	X_12303850_SNP [dm3] X_12409817_SNP [dm6]	C	G	5.778e^-5	1	UTR_3_PRIME CG2574
3L	4183533	3L_4183533_SNP [dm3] 3L_4183533_SNP [dm6]	G	A	5.838e^-5	1	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26464663	3R_26464663_SNP [dm3] 3R_30638941_SNP [dm6]	T	C	5.883e^-5	1	INTERGENIC
3L	3710760	3L_3710760_SNP [dm3] 3L_3710760_SNP [dm6]	T	C	5.892e^-5	1	INTERGENIC
X	9661764	X_9661764_SNP [dm3] X_9767731_SNP [dm6]	T	C	5.956e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9542636	3R_9542636_SNP [dm3] 3R_13716914_SNP [dm6]	C	T	5.969e^-5	1	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	2225371	3L_2225371_SNP [dm3] 3L_2225371_SNP [dm6]	G	A	6.000e^-5	1	INTERGENIC
2L	13824041	2L_13824041_SNP [dm3] 2L_13824041_SNP [dm6]	G	T	6.056e^-5	1	UTR_3_PRIME tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19383507	2R_19383507_SNP [dm3] 2R_23495984_SNP [dm6]	C	T	6.124e^-5	1	INTERGENIC
2R	10827905	2R_10827905_SNP [dm3] 2R_14940400_SNP [dm6]	T	C	6.126e^-5	1	UTR_3_PRIME Lap1 DOWNSTREAM Lap1
3R	13409182	3R_13409182_SNP [dm3] 3R_17583460_SNP [dm6]	A	C	6.371e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2464124	2R_2464124_DEL [dm3] 2R_6576619_DEL [dm6]	TTTTTGTAG	T	6.380e^-5	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3890993	2L_3890993_SNP [dm3] 2L_3890993_SNP [dm6]	T	G	6.443e^-5	1	UPSTREAM capu INTRON capu
3L	21107199	3L_21107199_SNP [dm3] 3L_21114099_SNP [dm6]	G	A	6.445e^-5	1	INTRON ko	regulatory region REDfly_CRMs
3R	18086087	3R_18086087_SNP [dm3] 3R_22260365_SNP [dm6]	A	G	6.456e^-5	1	INTRON SKIP
2R	9518729	2R_9518729_INS [dm3] 2R_13631224_INS [dm6]	CC	ATTG	6.690e^-5	1	INTRON fas
X	19127336	X_19127336_SNP [dm3] X_19233303_SNP [dm6]	T	G	6.724e^-5	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	7717893	X_7717893_SNP [dm3] X_7823860_SNP [dm6]	C	G	6.798e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1960028	2L_1960028_SNP [dm3] 2L_1960028_SNP [dm6]	A	G	6.879e^-5	1	INTRON erm	regulatory region REDfly_CRMs
2R	14662974	2R_14662974_SNP [dm3] 2R_18775469_SNP [dm6]	A	C	6.939e^-5	1	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2R	5829526	2R_5829526_SNP [dm3] 2R_9942021_SNP [dm6]	C	A	6.947e^-5	1	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	17828951	2L_17828951_SNP [dm3] 2L_17828951_SNP [dm6]	T	C	7.050e^-5	1	INTRON CadN2
3L	14884037	3L_14884037_SNP [dm3] 3L_14890937_SNP [dm6]	A	C	7.113e^-5	1	UPSTREAM CR45398 INTERGENIC
2R	2454309	2R_2454309_SNP [dm3] 2R_6566804_SNP [dm6]	G	A	7.290e^-5	1	INTRON jing
2R	14662956	2R_14662956_SNP [dm3] 2R_18775451_SNP [dm6]	A	G	7.394e^-5	1	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2R	10476036	2R_10476036_SNP [dm3] 2R_14588531_SNP [dm6]	C	T	7.418e^-5	1	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16936403	2R_16936403_DEL [dm3] 2R_21048898_DEL [dm6]	TCAGAAGCAGT...	T	7.453e^-5	1	DOWNSTREAM shg INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	2461804	2R_2461804_SNP [dm3] 2R_6574299_SNP [dm6]	G	C	7.561e^-5	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13873223	X_13873223_INS [dm3] X_13979190_INS [dm6]	T	TT	7.612e^-5	1	INTRON mamo
2R	2475968	2R_2475968_SNP [dm3] 2R_6588463_SNP [dm6]	G	T	7.614e^-5	1	INTRON jing
2R	14664484	2R_14664484_SNP [dm3] 2R_18776979_SNP [dm6]	C	G	7.616e^-5	1	UPSTREAM CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10964770	2L_10964770_SNP [dm3] 2L_10964770_SNP [dm6]	T	A	7.651e^-5	1	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2R	17794788	2R_17794788_SNP [dm3] 2R_21907283_SNP [dm6]	C	T	7.756e^-5	1	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16850685	2R_16850685_SNP [dm3] 2R_20963180_SNP [dm6]	A	T	7.761e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12772797	X_12772797_SNP [dm3] X_12878764_SNP [dm6]	T	G	7.821e^-5	1	INTRON Pde9
2R	14663982	2R_14663982_SNP [dm3] 2R_18776477_SNP [dm6]	G	A	7.829e^-5	1	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8143267	2L_8143267_SNP [dm3] 2L_8143267_SNP [dm6]	A	T	7.867e^-5	1	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	3518467	3L_3518467_SNP [dm3] 3L_3518467_SNP [dm6]	C	G	7.994e^-5	1	INTRON Eip63E
3R	10986656	3R_10986656_SNP [dm3] 3R_15160934_SNP [dm6]	G	A	8.019e^-5	1	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	19037864	2R_19037864_SNP [dm3] 2R_23150341_SNP [dm6]	C	T	8.039e^-5	1	INTERGENIC
3R	23200799	3R_23200799_SNP [dm3] 3R_27375077_SNP [dm6]	C	T	8.082e^-5	1	DOWNSTREAM side INTERGENIC
2R	1770932	2R_1770932_SNP [dm3] 2R_5883427_SNP [dm6]	C	T	8.083e^-5	1	INTERGENIC
3R	23160586	3R_23160586_INS [dm3] 3R_27334864_INS [dm6]	G	GTGGA	8.156e^-5	1	INTERGENIC
X	11821148	X_11821148_SNP [dm3] X_11927115_SNP [dm6]	A	G	8.187e^-5	1	SYNONYMOUS_CODING CG10362
2R	19849842	2R_19849842_SNP [dm3] 2R_23962319_SNP [dm6]	C	T	8.343e^-5	1	SYNONYMOUS_CODING CG13566 UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related
2R	10029303	2R_10029303_SNP [dm3] 2R_14141798_SNP [dm6]	C	G	8.352e^-5	1	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15442558	2R_15442558_SNP [dm3] 2R_19555053_SNP [dm6]	A	G	8.465e^-5	1	INTRON sm
X	19126337	X_19126337_SNP [dm3] X_19232304_SNP [dm6]	C	T	8.549e^-5	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	15566653	2L_15566653_SNP [dm3] 2L_15566653_SNP [dm6]	A	G	8.554e^-5	1	INTRON kek3
2R	19038414	2R_19038414_SNP [dm3] 2R_23150891_SNP [dm6]	T	A	8.621e^-5	1	INTERGENIC
X	19126772	X_19126772_SNP [dm3] X_19232739_SNP [dm6]	T	A	8.626e^-5	1	NON_SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12681401	2L_12681401_SNP [dm3] 2L_12681401_SNP [dm6]	G	A	8.694e^-5	1	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	7717905	X_7717905_SNP [dm3] X_7823872_SNP [dm6]	T	C	8.745e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18041382	2R_18041382_INS [dm3] 2R_22153877_INS [dm6]	A	AATTA	9.026e^-5	1	INTRON a
2L	3890893	2L_3890893_SNP [dm3] 2L_3890893_SNP [dm6]	G	T	9.103e^-5	1	UPSTREAM capu INTRON capu
2L	15519119	2L_15519119_SNP [dm3] 2L_15519119_SNP [dm6]	G	A	9.124e^-5	1	INTERGENIC
2L	3503533	2L_3503533_SNP [dm3] 2L_3503533_SNP [dm6]	A	G	9.170e^-5	1	SYNONYMOUS_CODING tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12139340	2L_12139340_SNP [dm3] 2L_12139340_SNP [dm6]	A	G	9.216e^-5	1	INTRON Gr33a
2L	3221106	2L_3221106_SNP [dm3] 2L_3221106_SNP [dm6]	T	C	9.258e^-5	1	INTERGENIC
2R	2455771	2R_2455771_SNP [dm3] 2R_6568266_SNP [dm6]	T	C	9.315e^-5	1	INTRON jing
3R	25959277	3R_25959277_SNP [dm3] 3R_30133555_SNP [dm6]	C	T	9.356e^-5	1	SYNONYMOUS_CODING Tpi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5774172	2L_5774172_SNP [dm3] 2L_5774172_SNP [dm6]	C	T	9.437e^-5	1	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9981863	2L_9981863_SNP [dm3] 2L_9981863_SNP [dm6]	A	T	9.453e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	2784056	X_2784056_SNP [dm3] X_2890023_SNP [dm6]	G	A	9.484e^-5	1	UPSTREAM CG3526 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2450023	2R_2450023_SNP [dm3] 2R_6562518_SNP [dm6]	G	C	9.511e^-5	1	INTRON jing	TF binding site mE1_TFBS_cad
3R	10986657	3R_10986657_SNP [dm3] 3R_15160935_SNP [dm6]	A	G	9.614e^-5	1	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	3136704	3L_3136704_SNP [dm3] 3L_3136704_SNP [dm6]	C	T	9.644e^-5	1	INTRON CG11537
2R	2455746	2R_2455746_SNP [dm3] 2R_6568241_SNP [dm6]	C	G	9.662e^-5	1	INTRON jing
X	19125647	X_19125647_SNP [dm3] X_19231614_SNP [dm6]	C	G	9.698e^-5	1	INTRON CG7884
2R	14652134	2R_14652134_SNP [dm3] 2R_18764629_SNP [dm6]	G	A	9.794e^-5	1	INTRON Mctp
X	14878004	X_14878004_SNP [dm3] X_14983971_SNP [dm6]	T	C	9.849e^-5	1	INTRON eag
X	7717896	X_7717896_SNP [dm3] X_7823863_SNP [dm6]	C	A	9.858e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2475823	2R_2475823_SNP [dm3] 2R_6588318_SNP [dm6]	G	T	9.888e^-5	1	INTRON jing
3L	3580875	3L_3580875_SNP [dm3] 3L_3580875_SNP [dm6]	A	T	9.973e^-5	1	INTRON Eip63E
2R	2473619	2R_2473619_SNP [dm3] 2R_6586114_SNP [dm6]	C	A	1.002e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	12303677	X_12303677_SNP [dm3] X_12409644_SNP [dm6]	G	A	1.012e^-4	1	SYNONYMOUS_CODING CG2574
X	17340171	X_17340171_SNP [dm3] X_17446138_SNP [dm6]	A	G	1.018e^-4	1	DOWNSTREAM p-cup INTERGENIC
X	3481546	X_3481546_SNP [dm3] X_3587513_SNP [dm6]	T	C	1.022e^-4	1	INTRON AstA-R1
2R	19038145	2R_19038145_DEL [dm3] 2R_23150622_DEL [dm6]	TATTACCAAGT...	T	1.028e^-4	1	INTERGENIC
2R	2448277	2R_2448277_SNP [dm3] 2R_6560772_SNP [dm6]	C	A	1.032e^-4	1	INTRON jing	TF binding site mE1_TFBS_chinmo
2R	14664189	2R_14664189_SNP [dm3] 2R_18776684_SNP [dm6]	T	C	1.034e^-4	1	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17811716	2R_17811716_SNP [dm3] 2R_21924211_SNP [dm6]	G	A	1.042e^-4	1	INTRON Fili
3L	3567368	3L_3567368_SNP [dm3] 3L_3567368_SNP [dm6]	T	C	1.043e^-4	1	INTRON Eip63E
2R	2452526	2R_2452526_SNP [dm3] 2R_6565021_SNP [dm6]	C	T	1.056e^-4	1	INTRON jing
2L	14011579	2L_14011579_SNP [dm3] 2L_14011579_SNP [dm6]	G	C	1.065e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
X	19127693	X_19127693_SNP [dm3] X_19233660_SNP [dm6]	T	C	1.082e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9662617	3R_9662617_SNP [dm3] 3R_13836895_SNP [dm6]	C	T	1.087e^-4	1	INTRON Nsf2	TF binding site BDTNP1_TFBS_dl
2R	18040153	2R_18040153_SNP [dm3] 2R_22152648_SNP [dm6]	T	C	1.093e^-4	1	INTRON a
3R	24088459	3R_24088459_SNP [dm3] 3R_28262737_SNP [dm6]	A	T	1.094e^-4	1	STOP_LOST CG43125
3R	17200604	3R_17200604_SNP [dm3] 3R_21374882_SNP [dm6]	A	C	1.095e^-4	1	INTRON mod_mdg4_	TF binding site mE1_TFBS_sens
3R	10987717	3R_10987717_SNP [dm3] 3R_15161995_SNP [dm6]	A	G	1.097e^-4	1	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi
2L	15519474	2L_15519474_SNP [dm3] 2L_15519474_SNP [dm6]	A	G	1.100e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	3267412	3L_3267412_SNP [dm3] 3L_3267412_SNP [dm6]	C	T	1.103e^-4	1	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25349630	3R_25349630_SNP [dm3] 3R_29523908_SNP [dm6]	C	T	1.109e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15263421	X_15263421_SNP [dm3] X_15369388_SNP [dm6]	C	T	1.114e^-4	1	INTRON acj6
2L	15519496	2L_15519496_SNP [dm3] 2L_15519496_SNP [dm6]	A	G	1.119e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	15519497	2L_15519497_SNP [dm3] 2L_15519497_SNP [dm6]	G	T	1.119e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	10987131	3R_10987131_SNP [dm3] 3R_15161409_SNP [dm6]	G	A	1.137e^-4	1	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	16732761	X_16732761_SNP [dm3] X_16838728_SNP [dm6]	A	T	1.153e^-4	1	UTR_3_PRIME RSG7	TF binding site BDTNP1_TFBS_dl
2L	19601082	2L_19601082_SNP [dm3] 2L_19601082_SNP [dm6]	T	A	1.160e^-4	1	INTRON CR44978 & 1 other
2R	13151453	2R_13151453_SNP [dm3] 2R_17263948_SNP [dm6]	A	T	1.166e^-4	1	INTRON mbl	TF binding site mE1_TFBS_Trl
2R	2474125	2R_2474125_SNP [dm3] 2R_6586620_SNP [dm6]	G	T	1.168e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14154438	2R_14154438_SNP [dm3] 2R_18266933_SNP [dm6]	T	A	1.175e^-4	1	INTERGENIC
3R	15262145	3R_15262145_SNP [dm3] 3R_19436423_SNP [dm6]	T	G	1.178e^-4	1	INTRON CG31221
2R	13185101	2R_13185101_SNP [dm3] 2R_17297596_SNP [dm6]	T	C	1.180e^-4	1	INTRON mbl
3R	15262157	3R_15262157_SNP [dm3] 3R_19436435_SNP [dm6]	A	G	1.188e^-4	1	INTRON CG31221
2R	2477001	2R_2477001_SNP [dm3] 2R_6589496_SNP [dm6]	C	G	1.192e^-4	1	INTRON jing
2R	10476104	2R_10476104_SNP [dm3] 2R_14588599_SNP [dm6]	T	G	1.195e^-4	1	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3503548	2L_3503548_SNP [dm3] 2L_3503548_SNP [dm6]	A	G	1.198e^-4	1	SYNONYMOUS_CODING tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16966938	X_16966938_SNP [dm3] X_17072905_SNP [dm6]	A	G	1.201e^-4	1	INTRON CG8949
2R	2037190	2R_2037190_SNP [dm3] 2R_6149685_SNP [dm6]	C	T	1.214e^-4	1	INTRON EcR
X	18988407	X_18988407_SNP [dm3] X_19094374_SNP [dm6]	A	T	1.224e^-4	1	INTERGENIC
3L	21292727	3L_21292727_SNP [dm3] 3L_21299627_SNP [dm6]	C	G	1.228e^-4	1	UPSTREAM Cpr78Cc DOWNSTREAM CG43702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	5531107	2L_5531107_SNP [dm3] 2L_5531107_SNP [dm6]	C	A	1.232e^-4	1	SYNONYMOUS_CODING CG7277 DOWNSTREAM CG31915 INTRON Cap-D3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19849878	2R_19849878_SNP [dm3] 2R_23962355_SNP [dm6]	C	A	1.237e^-4	1	UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related INTRON CG13566
3R	18632847	3R_18632847_SNP [dm3] 3R_22807125_SNP [dm6]	G	A	1.251e^-4	1	UTR_3_PRIME CG7031 DOWNSTREAM CG7031
2R	5829932	2R_5829932_SNP [dm3] 2R_9942427_SNP [dm6]	A	T	1.253e^-4	1	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	17808447	2R_17808447_DEL [dm3] 2R_21920942_DEL [dm6]	TAGGG	T	1.253e^-4	1	INTRON Fili	TF binding site mE1_TFBS_inv
2L	7597858	2L_7597858_SNP [dm3] 2L_7597858_SNP [dm6]	C	T	1.258e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19446421	3R_19446421_SNP [dm3] 3R_23620699_SNP [dm6]	C	G	1.259e^-4	1	INTRON CG31145
2L	15566412	2L_15566412_INS [dm3] 2L_15566412_INS [dm6]	T	TT	1.262e^-4	1	INTRON kek3
3R	13409123	3R_13409123_SNP [dm3] 3R_17583401_SNP [dm6]	A	G	1.267e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25730365	3R_25730365_SNP [dm3] 3R_29904643_SNP [dm6]	C	T	1.275e^-4	1	UPSTREAM CG15517 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3921376	3L_3921376_SNP [dm3] 3L_3921376_SNP [dm6]	T	C	1.276e^-4	1	INTRON Eip63F-1
3R	18632859	3R_18632859_SNP [dm3] 3R_22807137_SNP [dm6]	C	A	1.278e^-4	1	UTR_3_PRIME CG7031 DOWNSTREAM CG7031
2R	14904114	2R_14904114_INS [dm3] 2R_19016609_INS [dm6]	G	GG	1.282e^-4	1	INTERGENIC
3R	25542990	3R_25542990_SNP [dm3] 3R_29717268_SNP [dm6]	A	T	1.283e^-4	1	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10011172	2R_10011172_SNP [dm3] 2R_14123667_SNP [dm6]	G	C	1.284e^-4	1	INTRON Prosap
3L	10728776	3L_10728776_SNP [dm3] 3L_10735676_SNP [dm6]	C	T	1.309e^-4	1	INTERGENIC
2R	16409365	2R_16409365_SNP [dm3] 2R_20521860_SNP [dm6]	C	T	1.322e^-4	1	INTERGENIC
3L	18732606	3L_18732606_SNP [dm3] 3L_18739506_SNP [dm6]	T	C	1.326e^-4	1	INTERGENIC
3L	1934688	3L_1934688_SNP [dm3] 3L_1934688_SNP [dm6]	T	C	1.332e^-4	1	SYNONYMOUS_CODING CG5687
2L	19848803	2L_19848803_SNP [dm3] 2L_19848803_SNP [dm6]	G	A	1.346e^-4	1	INTRON sick
3R	13418241	3R_13418241_SNP [dm3] 3R_17592519_SNP [dm6]	A	G	1.348e^-4	1	INTERGENIC
3R	9542553	3R_9542553_SNP [dm3] 3R_13716831_SNP [dm6]	G	T	1.356e^-4	1	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	21294877	3L_21294877_INS [dm3] 3L_21301777_INS [dm6]	T	TT	1.357e^-4	1	DOWNSTREAM CG11309 & 1 other EXON CR45432
2L	12139598	2L_12139598_SNP [dm3] 2L_12139598_SNP [dm6]	A	G	1.372e^-4	1	INTRON Gr33a
2R	11026124	2R_11026124_SNP [dm3] 2R_15138619_SNP [dm6]	A	G	1.377e^-4	1	SYNONYMOUS_CODING chn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7944594	2R_7944594_SNP [dm3] 2R_12057089_SNP [dm6]	C	T	1.390e^-4	1	DOWNSTREAM CG44314 INTRON Drep-3
3L	2225342	3L_2225342_SNP [dm3] 3L_2225342_SNP [dm6]	G	A	1.390e^-4	1	INTERGENIC
2R	16166523	2R_16166523_SNP [dm3] 2R_20279018_SNP [dm6]	A	G	1.399e^-4	1	UPSTREAM CG9143 DOWNSTREAM CG9090 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8439045	3L_8439045_SNP [dm3] 3L_8445945_SNP [dm6]	G	C	1.403e^-4	1	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
2R	2475004	2R_2475004_SNP [dm3] 2R_6587499_SNP [dm6]	C	T	1.438e^-4	1	INTRON jing
2R	11037411	2R_11037411_SNP [dm3] 2R_15149906_SNP [dm6]	C	G	1.443e^-4	1	DOWNSTREAM CG7544 INTERGENIC
X	17451714	X_17451714_SNP [dm3] X_17557681_SNP [dm6]	A	G	1.462e^-4	1	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	9857730	X_9857730_SNP [dm3] X_9963697_SNP [dm6]	G	T	1.464e^-4	1	INTRON CG1791
X	14843968	X_14843968_SNP [dm3] X_14949935_SNP [dm6]	G	T	1.479e^-4	1	INTRON pdgy
2R	6748054	2R_6748054_SNP [dm3] 2R_10860549_SNP [dm6]	T	C	1.483e^-4	1	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16009334	3R_16009334_SNP [dm3] 3R_20183612_SNP [dm6]	T	C	1.483e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1770838	2R_1770838_SNP [dm3] 2R_5883333_SNP [dm6]	A	C	1.491e^-4	1	INTERGENIC
2R	18449765	2R_18449765_INS [dm3] 2R_22562260_INS [dm6]	A	AAGATTTCAA	1.525e^-4	1	UPSTREAM CG11362 & 1 other DOWNSTREAM dnr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22193849	3R_22193849_SNP [dm3] 3R_26368127_SNP [dm6]	T	C	1.531e^-4	1	INTERGENIC
2R	7266143	2R_7266143_SNP [dm3] 2R_11378638_SNP [dm6]	A	C	1.534e^-4	1	INTRON Tsp47F
2R	5829693	2R_5829693_SNP [dm3] 2R_9942188_SNP [dm6]	A	C	1.542e^-4	1	INTRON Mef2	TF binding site mE1_TFBS_sbb
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	1.549e^-4	1	INTRON beat-VI
X	11780625	X_11780625_SNP [dm3] X_11886592_SNP [dm6]	A	G	1.554e^-4	1	UPSTREAM SelG INTRON CG10353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9665745	3R_9665745_SNP [dm3] 3R_13840023_SNP [dm6]	G	T	1.559e^-4	1	UPSTREAM CG31495 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12139407	2L_12139407_SNP [dm3] 2L_12139407_SNP [dm6]	A	T	1.560e^-4	1	INTRON Gr33a
2R	19042163	2R_19042163_SNP [dm3] 2R_23154640_SNP [dm6]	C	G	1.578e^-4	1	INTRON CG9899
3L	8076363	3L_8076363_SNP [dm3] 3L_8083263_SNP [dm6]	C	A	1.592e^-4	1	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
X	14844007	X_14844007_SNP [dm3] X_14949974_SNP [dm6]	C	G	1.596e^-4	1	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
3R	23164491	3R_23164491_SNP [dm3] 3R_27338769_SNP [dm6]	T	C	1.616e^-4	1	INTERGENIC
2R	17175121	2R_17175121_SNP [dm3] 2R_21287616_SNP [dm6]	A	G	1.618e^-4	1	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3897622	2L_3897622_SNP [dm3] 2L_3897622_SNP [dm6]	C	G	1.623e^-4	1	INTRON capu
X	2694837	X_2694837_SNP [dm3] X_2800804_SNP [dm6]	G	C	1.624e^-4	1	INTRON kirre
3R	25542987	3R_25542987_SNP [dm3] 3R_29717265_SNP [dm6]	G	T	1.627e^-4	1	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17163608	2R_17163608_SNP [dm3] 2R_21276103_SNP [dm6]	C	A	1.629e^-4	1	INTRON Rgk3
3R	4940474	3R_4940474_SNP [dm3] 3R_9114752_SNP [dm6]	G	A	1.635e^-4	1	INTRON pum
2R	2477506	2R_2477506_SNP [dm3] 2R_6590001_SNP [dm6]	C	G	1.642e^-4	1	INTRON jing
2L	9468533	2L_9468533_SNP [dm3] 2L_9468533_SNP [dm6]	G	A	1.648e^-4	1	INTERGENIC
2L	8143273	2L_8143273_SNP [dm3] 2L_8143273_SNP [dm6]	G	T	1.650e^-4	1	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	25542992	3R_25542992_SNP [dm3] 3R_29717270_SNP [dm6]	C	T	1.659e^-4	1	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10722964	3L_10722964_SNP [dm3] 3L_10729864_SNP [dm6]	A	G	1.660e^-4	1	INTERGENIC
3L	10550604	3L_10550604_SNP [dm3] 3L_10557504_SNP [dm6]	C	T	1.680e^-4	1	UTR_3_PRIME CG6527 DOWNSTREAM CG6527 INTRON A2bp1
2R	18197500	2R_18197500_DEL [dm3] 2R_22309995_DEL [dm6]	TTCTG	T	1.690e^-4	1	UPSTREAM wdp INTRON wdp
3L	2405677	3L_2405677_SNP [dm3] 3L_2405677_SNP [dm6]	C	G	1.715e^-4	1	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13807055	2R_13807055_SNP [dm3] 2R_17919550_SNP [dm6]	G	A	1.721e^-4	1	INTRON Elk
3L	10454394	3L_10454394_SNP [dm3] 3L_10461294_SNP [dm6]	G	C	1.725e^-4	1	NON_SYNONYMOUS_CODING Gem3
X	15263413	X_15263413_SNP [dm3] X_15369380_SNP [dm6]	G	A	1.725e^-4	1	INTRON acj6
X	15271385	X_15271385_SNP [dm3] X_15377352_SNP [dm6]	T	A	1.725e^-4	1	INTRON acj6
X	17395185	X_17395185_SNP [dm3] X_17501152_SNP [dm6]	A	G	1.729e^-4	1	INTRON CG43658
2L	13464279	2L_13464279_SNP [dm3] 2L_13464279_SNP [dm6]	A	T	1.735e^-4	1	INTRON CG42784
2L	16848223	2L_16848223_SNP [dm3] 2L_16848223_SNP [dm6]	G	A	1.746e^-4	1	DOWNSTREAM CG31810 INTRON CG13284
X	19775474	X_19775474_INS [dm3] X_19881441_INS [dm6]	A	ACATA	1.747e^-4	1	INTRON Hers
2L	2842022	2L_2842022_SNP [dm3] 2L_2842022_SNP [dm6]	T	C	1.766e^-4	1	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	3503677	2L_3503677_SNP [dm3] 2L_3503677_SNP [dm6]	C	A	1.770e^-4	1	SYNONYMOUS_CODING tim INTRON tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14921973	3R_14921973_SNP [dm3] 3R_19096251_SNP [dm6]	A	C	1.788e^-4	1	UTR_3_PRIME ATPsyn-d UPSTREAM CG6040 DOWNSTREAM ATPsyn-d	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	13185849	2R_13185849_SNP [dm3] 2R_17298344_SNP [dm6]	G	A	1.802e^-4	1	INTRON mbl
2R	1770801	2R_1770801_DEL [dm3] 2R_5883296_DEL [dm6]	TGAT	T	1.812e^-4	1	INTERGENIC
3L	2979797	3L_2979797_SNP [dm3] 3L_2979797_SNP [dm6]	T	G	1.815e^-4	1	INTERGENIC
3R	25349780	3R_25349780_SNP [dm3] 3R_29524058_SNP [dm6]	T	C	1.827e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22564176	3R_22564176_SNP [dm3] 3R_26738454_SNP [dm6]	A	C	1.831e^-4	1	UTR_3_PRIME CG14247
2R	6747988	2R_6747988_SNP [dm3] 2R_10860483_SNP [dm6]	T	C	1.836e^-4	1	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10415545	3L_10415545_SNP [dm3] 3L_10422445_SNP [dm6]	A	G	1.839e^-4	1	INTERGENIC
2R	6589767	2R_6589767_SNP [dm3] 2R_10702262_SNP [dm6]	C	T	1.857e^-4	1	INTRON stan
2L	4305198	2L_4305198_SNP [dm3] 2L_4305198_SNP [dm6]	C	A	1.862e^-4	1	INTRON tutl
3L	8076400	3L_8076400_SNP [dm3] 3L_8083300_SNP [dm6]	G	T	1.865e^-4	1	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
X	17580849	X_17580849_SNP [dm3] X_17686816_SNP [dm6]	G	A	1.881e^-4	1	INTRON chas	TF binding site BDTNP1_TFBS_dl
2R	10821273	2R_10821273_SNP [dm3] 2R_14933768_SNP [dm6]	A	C	1.884e^-4	1	NON_SYNONYMOUS_CODING CG12853 UPSTREAM CG10253 INTRON CG10253	TF binding site mE1_TFBS_Trl
3R	10216310	3R_10216310_INS [dm3] 3R_14390588_INS [dm6]	A	AA	1.884e^-4	1	INTERGENIC
3L	12183698	3L_12183698_SNP [dm3] 3L_12190598_SNP [dm6]	A	C	1.891e^-4	1	UTR_3_PRIME Est-6 UPSTREAM Est-P DOWNSTREAM Est-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14215346	2L_14215346_SNP [dm3] 2L_14215346_SNP [dm6]	C	G	1.892e^-4	1	INTRON Dyrk2
2R	14661005	2R_14661005_SNP [dm3] 2R_18773500_SNP [dm6]	C	T	1.893e^-4	1	SYNONYMOUS_CODING Mctp
2R	6747997	2R_6747997_SNP [dm3] 2R_10860492_SNP [dm6]	C	T	1.899e^-4	1	DOWNSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3518512	3L_3518512_SNP [dm3] 3L_3518512_SNP [dm6]	A	T	1.902e^-4	1	INTRON Eip63E
X	17398232	X_17398232_SNP [dm3] X_17504199_SNP [dm6]	A	T	1.906e^-4	1	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	9553695	2R_9553695_SNP [dm3] 2R_13666190_SNP [dm6]	A	C	1.907e^-4	1	SYNONYMOUS_CODING CG13337 INTRON fas
X	7717899	X_7717899_SNP [dm3] X_7823866_SNP [dm6]	C	G	1.909e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25452756	3R_25452756_SNP [dm3] 3R_29627034_SNP [dm6]	G	T	1.916e^-4	1	INTERGENIC
2L	3437575	2L_3437575_SNP [dm3] 2L_3437575_SNP [dm6]	C	T	1.949e^-4	1	INTERGENIC
X	16754927	X_16754927_INS [dm3] X_16860894_INS [dm6]	T	TT	1.950e^-4	1	INTRON CG13003
2L	11187186	2L_11187186_SNP [dm3] 2L_11187186_SNP [dm6]	T	A	1.952e^-4	1	INTRON Ca-beta
3R	25349701	3R_25349701_SNP [dm3] 3R_29523979_SNP [dm6]	G	T	1.957e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21275206	3L_21275206_SNP [dm3] 3L_21282106_SNP [dm6]	C	T	1.957e^-4	1	UTR_3_PRIME CG12974 UPSTREAM ppl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17213548	X_17213548_SNP [dm3] X_17319515_SNP [dm6]	G	A	1.964e^-4	1	INTRON B-H2
X	17210180	X_17210180_SNP [dm3] X_17316147_SNP [dm6]	C	A	1.970e^-4	1	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	17004113	X_17004113_SNP [dm3] X_17110080_SNP [dm6]	T	A	1.975e^-4	1	INTRON CG5004	TF binding site BDTNP1_TFBS_twi
2R	2460780	2R_2460780_SNP [dm3] 2R_6573275_SNP [dm6]	C	T	1.975e^-4	1	INTRON jing	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	3890853	2L_3890853_SNP [dm3] 2L_3890853_SNP [dm6]	C	A	1.976e^-4	1	UPSTREAM capu INTRON capu
2L	2842028	2L_2842028_SNP [dm3] 2L_2842028_SNP [dm6]	C	G	1.978e^-4	1	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	11990134	2L_11990134_SNP [dm3] 2L_11990134_SNP [dm6]	A	G	1.984e^-4	1	SYNONYMOUS_CODING dgt2 UPSTREAM zuc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	1219573	3L_1219573_SNP [dm3] 3L_1219573_SNP [dm6]	G	A	1.996e^-4	1	UPSTREAM LysP INTRON mwh
2L	7851229	2L_7851229_DEL [dm3] 2L_7851229_DEL [dm6]	AGC	A	1.999e^-4	1	INTRON CG14535
3L	9144399	3L_9144399_SNP [dm3] 3L_9151299_SNP [dm6]	C	T	2.001e^-4	1	SYNONYMOUS_CODING Rdl
3L	11672388	3L_11672388_SNP [dm3] 3L_11679288_SNP [dm6]	C	T	2.005e^-4	1	INTRON CG32085
2R	2482193	2R_2482193_SNP [dm3] 2R_6594688_SNP [dm6]	C	T	2.012e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10867376	2R_10867376_SNP [dm3] 2R_14979871_SNP [dm6]	A	T	2.021e^-4	1	UTR_3_PRIME ckn
2L	5642535	2L_5642535_SNP [dm3] 2L_5642535_SNP [dm6]	A	G	2.024e^-4	1	DOWNSTREAM mir-963 & 1 other INTRON CG31646
3L	8004993	3L_8004993_SNP [dm3] 3L_8011893_SNP [dm6]	G	A	2.027e^-4	1	INTRON nmo
3R	22520225	3R_22520225_INS [dm3] 3R_26694503_INS [dm6]	G	GTTGG	2.034e^-4	1	UPSTREAM TwdlQ INTERGENIC
2R	16166874	2R_16166874_SNP [dm3] 2R_20279369_SNP [dm6]	A	C	2.055e^-4	1	UPSTREAM CG9143 INTRON CG9090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16965515	X_16965515_SNP [dm3] X_17071482_SNP [dm6]	A	G	2.057e^-4	1	INTRON CG8949	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2482719	3L_2482719_SNP [dm3] 3L_2482719_SNP [dm6]	A	T	2.066e^-4	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	2.076e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
X	21088891	X_21088891_SNP [dm3] X_21217864_SNP [dm6]	G	T	2.076e^-4	1	UPSTREAM CG32523 INTRON CG32521
3L	10215528	3L_10215528_SNP [dm3] 3L_10222428_SNP [dm6]	C	T	2.081e^-4	1	INTRON scramb1
X	16754996	X_16754996_SNP [dm3] X_16860963_SNP [dm6]	T	C	2.084e^-4	1	INTRON CG13003
3R	10993052	3R_10993052_SNP [dm3] 3R_15167330_SNP [dm6]	T	G	2.087e^-4	1	INTRON Gyc88E
2R	2040186	2R_2040186_SNP [dm3] 2R_6152681_SNP [dm6]	A	T	2.089e^-4	1	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18041394	2R_18041394_SNP [dm3] 2R_22153889_SNP [dm6]	A	T	2.090e^-4	1	INTRON a
3L	11676212	3L_11676212_SNP [dm3] 3L_11683112_SNP [dm6]	C	A	2.093e^-4	1	SYNONYMOUS_CODING TfIIEalpha UPSTREAM Sug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	590475	3L_590475_SNP [dm3] 3L_590475_SNP [dm6]	T	C	2.105e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2455752	2R_2455752_SNP [dm3] 2R_6568247_SNP [dm6]	T	A	2.113e^-4	1	INTRON jing
2R	2475768	2R_2475768_SNP [dm3] 2R_6588263_SNP [dm6]	T	A	2.125e^-4	1	INTRON jing
2R	16955395	2R_16955395_SNP [dm3] 2R_21067890_SNP [dm6]	A	G	2.126e^-4	1	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
3R	10976755	3R_10976755_SNP [dm3] 3R_15151033_SNP [dm6]	C	G	2.136e^-4	1	UPSTREAM Gyc88E INTRON Gyc88E
X	19133759	X_19133759_SNP [dm3] X_19239726_SNP [dm6]	G	T	2.141e^-4	1	INTRON CG14196
2L	15566656	2L_15566656_SNP [dm3] 2L_15566656_SNP [dm6]	T	G	2.143e^-4	1	INTRON kek3
2R	15049519	2R_15049519_SNP [dm3] 2R_19162014_SNP [dm6]	G	A	2.151e^-4	1	UTR_3_PRIME ena
2R	14680661	2R_14680661_SNP [dm3] 2R_18793156_SNP [dm6]	A	G	2.157e^-4	1	SYNONYMOUS_CODING CG15080
2L	15597811	2L_15597811_SNP [dm3] 2L_15597811_SNP [dm6]	G	T	2.159e^-4	1	INTERGENIC
2L	17494845	2L_17494845_SNP [dm3] 2L_17494845_SNP [dm6]	G	C	2.164e^-4	1	INTRON qua
3R	10984846	3R_10984846_SNP [dm3] 3R_15159124_SNP [dm6]	C	G	2.165e^-4	1	INTRON Gyc88E
X	16997520	X_16997520_SNP [dm3] X_17103487_SNP [dm6]	A	T	2.175e^-4	1	INTRON CG4991
3R	25578171	3R_25578171_SNP [dm3] 3R_29752449_SNP [dm6]	T	C	2.187e^-4	1	NON_SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	2.190e^-4	1	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	6905331	2L_6905331_INS [dm3] 2L_6905331_INS [dm6]	G	GCGG	2.197e^-4	1		TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19128963	X_19128963_SNP [dm3] X_19234930_SNP [dm6]	A	G	2.206e^-4	1	INTRON CG7884	TF binding site mE1_TFBS_chinmo
2R	5829099	2R_5829099_SNP [dm3] 2R_9941594_SNP [dm6]	C	T	2.214e^-4	1	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	2457962	2R_2457962_SNP [dm3] 2R_6570457_SNP [dm6]	A	G	2.219e^-4	1	INTRON jing	transposable element FlyBase
2L	6386368	2L_6386368_SNP [dm3] 2L_6386368_SNP [dm6]	T	G	2.221e^-4	1	UPSTREAM CG42370 INTRON CG42368
X	7717880	X_7717880_SNP [dm3] X_7823847_SNP [dm6]	C	T	2.232e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6222640	2L_6222640_SNP [dm3] 2L_6222640_SNP [dm6]	G	T	2.243e^-4	1	INTERGENIC
2L	11352620	2L_11352620_SNP [dm3] 2L_11352620_SNP [dm6]	A	G	2.255e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
2R	17297285	2R_17297285_SNP [dm3] 2R_21409780_SNP [dm6]	T	C	2.256e^-4	1	INTRON Sdc
2L	15576571	2L_15576571_SNP [dm3] 2L_15576571_SNP [dm6]	T	A	2.259e^-4	1	INTRON kek3
3R	11702459	3R_11702459_SNP [dm3] 3R_15876737_SNP [dm6]	T	C	2.266e^-4	1	UPSTREAM CG31183 INTERGENIC
3R	26157908	3R_26157908_SNP [dm3] 3R_30332186_SNP [dm6]	G	C	2.273e^-4	1	INTRON hdc	TF binding site mE1_TFBS_Kr
2R	14798731	2R_14798731_SNP [dm3] 2R_18911226_SNP [dm6]	C	T	2.274e^-4	1	SYNONYMOUS_CODING Vha100-3 INTRON sano	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3537899	X_3537899_SNP [dm3] X_3643866_SNP [dm6]	T	C	2.283e^-4	1	INTRON AstA-R1
2R	9276277	2R_9276277_SNP [dm3] 2R_13388772_SNP [dm6]	G	A	2.286e^-4	1	DOWNSTREAM CG43691 INTERGENIC
2R	10029195	2R_10029195_SNP [dm3] 2R_14141690_SNP [dm6]	A	G	2.298e^-4	1	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19849874	2R_19849874_SNP [dm3] 2R_23962351_SNP [dm6]	G	T	2.299e^-4	1	UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related INTRON CG13566
X	17399015	X_17399015_SNP [dm3] X_17504982_SNP [dm6]	A	T	2.302e^-4	1	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	17295057	2R_17295057_SNP [dm3] 2R_21407552_SNP [dm6]	T	G	2.315e^-4	1	INTRON Sdc
2R	6063371	2R_6063371_SNP [dm3] 2R_10175866_SNP [dm6]	A	G	2.319e^-4	1	INTRON KCNQ
3R	22505104	3R_22505104_SNP [dm3] 3R_26679382_SNP [dm6]	C	G	2.322e^-4	1	INTRON beat-VII	TF binding site mE1_TFBS_chinmo
2L	17837806	2L_17837806_SNP [dm3] 2L_17837806_SNP [dm6]	C	T	2.331e^-4	1	INTRON CadN2
2L	17414672	2L_17414672_SNP [dm3] 2L_17414672_SNP [dm6]	T	C	2.332e^-4	1	DOWNSTREAM Dif INTRON Dif
3L	12656493	3L_12656493_SNP [dm3] 3L_12663393_SNP [dm6]	A	G	2.335e^-4	1	INTERGENIC
3L	2890260	3L_2890260_SNP [dm3] 3L_2890260_SNP [dm6]	G	A	2.335e^-4	1	INTRON spz5
3L	12183697	3L_12183697_SNP [dm3] 3L_12190597_SNP [dm6]	A	G	2.336e^-4	1	UTR_3_PRIME Est-6 UPSTREAM Est-P DOWNSTREAM Est-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11352417	2L_11352417_SNP [dm3] 2L_11352417_SNP [dm6]	A	G	2.337e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	15597869	2L_15597869_SNP [dm3] 2L_15597869_SNP [dm6]	A	T	2.340e^-4	1	INTERGENIC
2L	14194789	2L_14194789_SNP [dm3] 2L_14194789_SNP [dm6]	C	T	2.346e^-4	1	INTRON Dyrk2
X	21429454	X_21429454_SNP [dm3] X_21558427_SNP [dm6]	G	T	2.355e^-4	1	INTERGENIC
2L	16205227	2L_16205227_SNP [dm3] 2L_16205227_SNP [dm6]	A	C	2.367e^-4	1	INTERGENIC
3L	4477239	3L_4477239_SNP [dm3] 3L_4477239_SNP [dm6]	T	C	2.367e^-4	1	INTERGENIC
3R	25543006	3R_25543006_SNP [dm3] 3R_29717284_SNP [dm6]	A	G	2.376e^-4	1	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25543060	3R_25543060_SNP [dm3] 3R_29717338_SNP [dm6]	C	A	2.380e^-4	1	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3503602	2L_3503602_SNP [dm3] 2L_3503602_SNP [dm6]	G	T	2.385e^-4	1	SYNONYMOUS_CODING tim INTRON tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1632100	2L_1632100_SNP [dm3] 2L_1632100_SNP [dm6]	C	T	2.386e^-4	1	INTERGENIC
3R	15977607	3R_15977607_SNP [dm3] 3R_20151885_SNP [dm6]	T	C	2.395e^-4	1	INTERGENIC
X	19126652	X_19126652_SNP [dm3] X_19232619_SNP [dm6]	C	T	2.402e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12814043	3L_12814043_DEL [dm3] 3L_12820943_DEL [dm6]	ACAACTGAATCCTGTA...	A	2.403e^-4	1	CODON_DELETION CG42588	TF binding site mE1_TFBS_sens
2R	18940141	2R_18940141_SNP [dm3] 2R_23052618_SNP [dm6]	T	A	2.405e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1932639	3L_1932639_SNP [dm3] 3L_1932639_SNP [dm6]	G	C	2.411e^-4	1	DOWNSTREAM CG5687 INTRON Dbx	TF binding site mE1_TFBS_chinmo
3R	13465546	3R_13465546_INS [dm3] 3R_17639824_INS [dm6]	C	CC	2.414e^-4	1	DOWNSTREAM CR45222 INTRON CG43175
3R	19446316	3R_19446316_INS [dm3] 3R_23620594_INS [dm6]	G	GG	2.419e^-4	1	INTRON CG31145
3L	12182948	3L_12182948_SNP [dm3] 3L_12189848_SNP [dm6]	T	C	2.421e^-4	1	SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
2R	4491175	2R_4491175_SNP [dm3] 2R_8603670_SNP [dm6]	T	C	2.431e^-4	1	INTRON rgr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3230605	2L_3230605_SNP [dm3] 2L_3230605_SNP [dm6]	A	G	2.439e^-4	1	INTERGENIC
2L	4305263	2L_4305263_SNP [dm3] 2L_4305263_SNP [dm6]	T	C	2.449e^-4	1	INTRON tutl
2R	17960155	2R_17960155_INS [dm3] 2R_22072650_INS [dm6]	G	GG	2.460e^-4	1	DOWNSTREAM CG2921 INTRON CG11474
3L	14853972	3L_14853972_SNP [dm3] 3L_14860872_SNP [dm6]	A	G	2.460e^-4	1	INTRON CG17839
2L	3503554	2L_3503554_SNP [dm3] 2L_3503554_SNP [dm6]	A	G	2.462e^-4	1	SYNONYMOUS_CODING tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12349051	X_12349051_SNP [dm3] X_12455018_SNP [dm6]	C	G	2.466e^-4	1	SYNONYMOUS_CODING CG15927 UPSTREAM CR45615
3R	14621245	3R_14621245_SNP [dm3] 3R_18795523_SNP [dm6]	A	G	2.472e^-4	1	UPSTREAM CG7720 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12681210	2L_12681210_SNP [dm3] 2L_12681210_SNP [dm6]	C	T	2.486e^-4	1	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2477542	2R_2477542_SNP [dm3] 2R_6590037_SNP [dm6]	G	A	2.493e^-4	1	INTRON jing
2R	16955440	2R_16955440_SNP [dm3] 2R_21067935_SNP [dm6]	T	A	2.501e^-4	1	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2R	2478202	2R_2478202_SNP [dm3] 2R_6590697_SNP [dm6]	T	G	2.508e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9631771	X_9631771_DEL [dm3] X_9737738_DEL [dm6]	TGACATTACG	T	2.509e^-4	1	INTRON Sp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	4209516	2R_4209516_DEL [dm3] 2R_8322011_DEL [dm6]	CATAGAATTAC...	C	2.529e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2441603	2R_2441603_SNP [dm3] 2R_6554098_SNP [dm6]	T	A	2.533e^-4	1	INTRON jing
X	17004147	X_17004147_DEL [dm3] X_17110114_DEL [dm6]	TTTGGTTT	T	2.533e^-4	1	INTRON CG5004	TF binding site BDTNP1_TFBS_twi
X	3293889	X_3293889_SNP [dm3] X_3399856_SNP [dm6]	G	C	2.545e^-4	1	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_hb
X	19126592	X_19126592_SNP [dm3] X_19232559_SNP [dm6]	T	C	2.550e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2899984	2L_2899984_SNP [dm3] 2L_2899984_SNP [dm6]	C	A	2.558e^-4	1	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3503266	2L_3503266_SNP [dm3] 2L_3503266_SNP [dm6]	C	T	2.566e^-4	1	SYNONYMOUS_CODING tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19132991	X_19132991_SNP [dm3] X_19238958_SNP [dm6]	G	A	2.566e^-4	1	INTRON CG14196	TF binding site mE1_TFBS_sens
3L	7226422	3L_7226422_SNP [dm3] 3L_7233322_SNP [dm6]	G	A	2.569e^-4	1	INTERGENIC
2R	2464163	2R_2464163_DEL [dm3] 2R_6576658_DEL [dm6]	TT	T	2.572e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6827805	2R_6827805_SNP [dm3] 2R_10940300_SNP [dm6]	T	C	2.582e^-4	1	UTR_3_PRIME Spn47C
2R	18438635	2R_18438635_SNP [dm3] 2R_22551130_SNP [dm6]	A	G	2.585e^-4	1	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7943598	2R_7943598_SNP [dm3] 2R_12056093_SNP [dm6]	G	C	2.586e^-4	1	NON_SYNONYMOUS_CODING Drep-3 UTR_3_PRIME CG44314
3L	2923111	3L_2923111_SNP [dm3] 3L_2923111_SNP [dm6]	C	T	2.600e^-4	1	INTRON Shab
2L	13464093	2L_13464093_SNP [dm3] 2L_13464093_SNP [dm6]	T	A	2.600e^-4	1	INTRON CG42784
2R	7943386	2R_7943386_SNP [dm3] 2R_12055881_SNP [dm6]	G	A	2.605e^-4	1	INTRON CG44314 & 1 other
2R	18777732	2R_18777732_SNP [dm3] 2R_22890209_SNP [dm6]	G	A	2.610e^-4	1	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2L	15565899	2L_15565899_SNP [dm3] 2L_15565899_SNP [dm6]	A	C	2.617e^-4	1	INTRON kek3
2L	15435406	2L_15435406_SNP [dm3] 2L_15435406_SNP [dm6]	A	T	2.617e^-4	1	UPSTREAM CR44861 DOWNSTREAM CG4161 INTERGENIC
3R	10216355	3R_10216355_INS [dm3] 3R_14390633_INS [dm6]	C	CAA	2.622e^-4	1	INTERGENIC
2R	9748527	2R_9748527_SNP [dm3] 2R_13861022_SNP [dm6]	G	A	2.625e^-4	1	SYNONYMOUS_CODING CG16935 UPSTREAM CG13344 DOWNSTREAM Uba3	TF binding site mE1_TFBS_cad
3L	13456229	3L_13456229_SNP [dm3] 3L_13463129_SNP [dm6]	T	A	2.626e^-4	1	INTRON CG10738
3L	1913713	3L_1913713_SNP [dm3] 3L_1913713_SNP [dm6]	C	T	2.632e^-4	1	INTERGENIC
2R	14022816	2R_14022816_SNP [dm3] 2R_18135311_SNP [dm6]	T	C	2.637e^-4	1	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6265038	2R_6265038_SNP [dm3] 2R_10377533_SNP [dm6]	T	C	2.641e^-4	1	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
X	19129025	X_19129025_SNP [dm3] X_19234992_SNP [dm6]	G	C	2.653e^-4	1	INTRON CG7884	TF binding site mE1_TFBS_chinmo
2R	10015088	2R_10015088_SNP [dm3] 2R_14127583_SNP [dm6]	T	G	2.664e^-4	1	INTRON Prosap
2L	12748779	2L_12748779_INS [dm3] 2L_12748779_INS [dm6]	T	TGTTTT	2.665e^-4	1	INTERGENIC
3L	2400141	3L_2400141_INS [dm3] 3L_2400141_INS [dm6]	C	CC	2.666e^-4	1	UPSTREAM CG45186 INTRON CG45186
2R	16634662	2R_16634662_SNP [dm3] 2R_20747157_SNP [dm6]	T	A	2.672e^-4	1	INTRON dpr
2R	10884221	2R_10884221_SNP [dm3] 2R_14996716_SNP [dm6]	A	C	2.682e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18867175	2R_18867175_SNP [dm3] 2R_22979652_SNP [dm6]	T	G	2.706e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11247070	2R_11247070_SNP [dm3] 2R_15359565_SNP [dm6]	A	C	2.712e^-4	1	INTRON unc-5
X	19126976	X_19126976_SNP [dm3] X_19232943_SNP [dm6]	C	A	2.714e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2466889	2R_2466889_SNP [dm3] 2R_6579384_SNP [dm6]	C	T	2.715e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	4136267	2L_4136267_SNP [dm3] 2L_4136267_SNP [dm6]	C	T	2.717e^-4	1	INTERGENIC
2R	14662928	2R_14662928_SNP [dm3] 2R_18775423_SNP [dm6]	G	C	2.725e^-4	1	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4745856	3R_4745856_SNP [dm3] 3R_8920134_SNP [dm6]	G	T	2.728e^-4	1	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14028783	3R_14028783_SNP [dm3] 3R_18203061_SNP [dm6]	G	A	2.740e^-4	1	INTRON CG7985
X	17213202	X_17213202_SNP [dm3] X_17319169_SNP [dm6]	C	T	2.744e^-4	1	INTRON B-H2
2R	11651590	2R_11651590_SNP [dm3] 2R_15764085_SNP [dm6]	G	C	2.744e^-4	1	NON_SYNONYMOUS_CODING Zasp52 INTRON Zasp52
3R	22564154	3R_22564154_SNP [dm3] 3R_26738432_SNP [dm6]	C	T	2.750e^-4	1	UTR_3_PRIME CG14247
2R	10473896	2R_10473896_DEL [dm3] 2R_14586391_DEL [dm6]	CAAAGC	C	2.755e^-4	1	UTR_3_PRIME ttv
3R	13409081	3R_13409081_SNP [dm3] 3R_17583359_SNP [dm6]	T	A	2.757e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4312581	2R_4312581_SNP [dm3] 2R_8425076_SNP [dm6]	C	T	2.760e^-4	1	INTRON CSN7	TF binding site mE1_TFBS_chinmo
X	16746078	X_16746078_SNP [dm3] X_16852045_SNP [dm6]	T	C	2.762e^-4	1	INTRON CG13003
3R	10216353	3R_10216353_INS [dm3] 3R_14390631_INS [dm6]	T	TAGA	2.765e^-4	1	INTERGENIC
2L	3890884	2L_3890884_SNP [dm3] 2L_3890884_SNP [dm6]	G	T	2.768e^-4	1	UPSTREAM capu INTRON capu
3L	2979706	3L_2979706_SNP [dm3] 3L_2979706_SNP [dm6]	G	A	2.769e^-4	1	INTERGENIC
2R	2043426	2R_2043426_SNP [dm3] 2R_6155921_SNP [dm6]	G	A	2.771e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2040187	2R_2040187_SNP [dm3] 2R_6152682_SNP [dm6]	C	G	2.772e^-4	1	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2980852	3L_2980852_SNP [dm3] 3L_2980852_SNP [dm6]	A	G	2.773e^-4	1	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2472955	2R_2472955_SNP [dm3] 2R_6585450_SNP [dm6]	G	A	2.775e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3190712	2L_3190712_SNP [dm3] 2L_3190712_SNP [dm6]	T	A	2.775e^-4	1	NON_SYNONYMOUS_CODING CG34393
2R	14022646	2R_14022646_SNP [dm3] 2R_18135141_SNP [dm6]	A	T	2.786e^-4	1	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20689883	X_20689883_SNP [dm3] X_20818856_SNP [dm6]	G	A	2.792e^-4	1	INTRON shakB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12681290	2L_12681290_SNP [dm3] 2L_12681290_SNP [dm6]	G	A	2.792e^-4	1	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16061434	3L_16061434_SNP [dm3] 3L_16068334_SNP [dm6]	A	G	2.804e^-4	1	SYNONYMOUS_CODING Mbs INTRON Mbs	TF binding site mE1_TFBS_cad
3R	17292298	3R_17292298_SNP [dm3] 3R_21466576_SNP [dm6]	T	G	2.805e^-4	1	DOWNSTREAM CR43453 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25356335	3R_25356335_SNP [dm3] 3R_29530613_SNP [dm6]	T	A	2.808e^-4	1	INTERGENIC
3R	4949009	3R_4949009_SNP [dm3] 3R_9123287_SNP [dm6]	C	A	2.818e^-4	1	INTRON pum
2R	11037302	2R_11037302_SNP [dm3] 2R_15149797_SNP [dm6]	A	G	2.819e^-4	1	DOWNSTREAM CG7544 INTERGENIC
2R	18041387	2R_18041387_SNP [dm3] 2R_22153882_SNP [dm6]	T	C	2.819e^-4	1	INTRON a
2R	18041402	2R_18041402_SNP [dm3] 2R_22153897_SNP [dm6]	T	A	2.819e^-4	1	INTRON a
2L	19833174	2L_19833174_SNP [dm3] 2L_19833174_SNP [dm6]	A	G	2.823e^-4	1	INTRON sick
3L	12658631	3L_12658631_SNP [dm3] 3L_12665531_SNP [dm6]	A	T	2.825e^-4	1	INTERGENIC
2R	11037066	2R_11037066_SNP [dm3] 2R_15149561_SNP [dm6]	G	A	2.832e^-4	1	UTR_3_PRIME CG7544
3L	3517984	3L_3517984_SNP [dm3] 3L_3517984_SNP [dm6]	A	T	2.847e^-4	1	INTRON Eip63E
2L	6211584	2L_6211584_SNP [dm3] 2L_6211584_SNP [dm6]	C	T	2.852e^-4	1	DOWNSTREAM CG34380 INTERGENIC
2L	14797034	2L_14797034_INS [dm3] 2L_14797034_INS [dm6]	C	CC	2.853e^-4	1	UPSTREAM CG18420 INTERGENIC
2R	19037744	2R_19037744_SNP [dm3] 2R_23150221_SNP [dm6]	C	G	2.855e^-4	1	INTERGENIC
2R	13807029	2R_13807029_SNP [dm3] 2R_17919524_SNP [dm6]	G	A	2.862e^-4	1	INTRON Elk
2L	20292142	2L_20292142_SNP [dm3] 2L_20292142_SNP [dm6]	C	T	2.867e^-4	1	INTERGENIC
3L	4183578	3L_4183578_SNP [dm3] 3L_4183578_SNP [dm6]	C	T	2.872e^-4	1	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16998124	X_16998124_SNP [dm3] X_17104091_SNP [dm6]	G	C	2.876e^-4	1	UTR_3_PRIME CG4991 DOWNSTREAM Arpc3B
X	16357075	X_16357075_SNP [dm3] X_16463042_SNP [dm6]	T	G	2.900e^-4	1	UTR_3_PRIME para DOWNSTREAM para
2R	17571222	2R_17571222_SNP [dm3] 2R_21683717_SNP [dm6]	C	G	2.900e^-4	1	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9013131	2L_9013131_SNP [dm3] 2L_9013131_SNP [dm6]	A	G	2.904e^-4	1	SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102 DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17592800	2L_17592800_SNP [dm3] 2L_17592800_SNP [dm6]	T	A	2.905e^-4	1	UPSTREAM Sytalpha & 1 other INTRON Sytalpha
X	17328552	X_17328552_SNP [dm3] X_17434519_SNP [dm6]	G	T	2.908e^-4	1	INTRON CG12994
2L	8234254	2L_8234254_SNP [dm3] 2L_8234254_SNP [dm6]	T	C	2.908e^-4	1	INTRON Pvr
2R	7935789	2R_7935789_SNP [dm3] 2R_12048284_SNP [dm6]	G	A	2.916e^-4	1	INTRON Drep-1
2L	1535127	2L_1535127_SNP [dm3] 2L_1535127_SNP [dm6]	G	A	2.919e^-4	1	INTERGENIC
2R	2474121	2R_2474121_SNP [dm3] 2R_6586616_SNP [dm6]	T	A	2.923e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9494801	3L_9494801_SNP [dm3] 3L_9501701_SNP [dm6]	T	A	2.931e^-4	1	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	14894011	3L_14894011_SNP [dm3] 3L_14900911_SNP [dm6]	T	C	2.947e^-4	1	INTERGENIC
X	17328555	X_17328555_SNP [dm3] X_17434522_SNP [dm6]	T	C	2.956e^-4	1	INTRON CG12994
X	17451645	X_17451645_SNP [dm3] X_17557612_SNP [dm6]	A	G	2.958e^-4	1	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	12760335	2L_12760335_SNP [dm3] 2L_12760335_SNP [dm6]	T	C	2.961e^-4	1	DOWNSTREAM CG15483 INTERGENIC
2R	6063372	2R_6063372_SNP [dm3] 2R_10175867_SNP [dm6]	C	T	2.964e^-4	1	INTRON KCNQ
2R	8174188	2R_8174188_SNP [dm3] 2R_12286683_SNP [dm6]	C	G	2.969e^-4	1	INTRON CG42700
3L	4476391	3L_4476391_SNP [dm3] 3L_4476391_SNP [dm6]	A	G	2.976e^-4	1	INTERGENIC
3L	2891338	3L_2891338_SNP [dm3] 3L_2891338_SNP [dm6]	G	T	2.979e^-4	1	INTRON spz5
2R	14160438	2R_14160438_SNP [dm3] 2R_18272933_SNP [dm6]	G	A	2.989e^-4	1	INTERGENIC
X	14302143	X_14302143_SNP [dm3] X_14408110_SNP [dm6]	G	A	2.990e^-4	1	INTRON dpr8
X	17306168	X_17306168_SNP [dm3] X_17412135_SNP [dm6]	T	G	2.995e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	13413746	3R_13413746_SNP [dm3] 3R_17588024_SNP [dm6]	C	T	2.999e^-4	1	INTERGENIC
X	19128854	X_19128854_SNP [dm3] X_19234821_SNP [dm6]	T	A	3.004e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site mE1_TFBS_chinmo
3L	3267402	3L_3267402_SNP [dm3] 3L_3267402_SNP [dm6]	T	C	3.004e^-4	1	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14423807	2R_14423807_SNP [dm3] 2R_18536302_SNP [dm6]	T	A	3.014e^-4	1	UPSTREAM Pepck & 1 other DOWNSTREAM CG10924 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1932507	3L_1932507_SNP [dm3] 3L_1932507_SNP [dm6]	T	C	3.017e^-4	1	INTRON Dbx	TF binding site mE1_TFBS_chinmo
X	19124191	X_19124191_SNP [dm3] X_19230158_SNP [dm6]	C	T	3.020e^-4	1	INTRON CG7884
3L	10548721	3L_10548721_SNP [dm3] 3L_10555621_SNP [dm6]	C	A	3.026e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	25543001	3R_25543001_SNP [dm3] 3R_29717279_SNP [dm6]	G	C	3.041e^-4	1	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	2440840	2R_2440840_DEL [dm3] 2R_6553335_DEL [dm6]	AACACC	A	3.044e^-4	1	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7141670	2L_7141670_INS [dm3] 2L_7141670_INS [dm6]	C	CCTGC	3.048e^-4	1	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19996198	2R_19996198_SNP [dm3] 2R_24108675_SNP [dm6]	A	T	3.049e^-4	1	INTRON CG4049
3R	22192772	3R_22192772_SNP [dm3] 3R_26367050_SNP [dm6]	T	C	3.055e^-4	1	INTERGENIC
2L	6958615	2L_6958615_SNP [dm3] 2L_6958615_SNP [dm6]	A	T	3.058e^-4	1	DOWNSTREAM Atac1 INTRON CG3430
2L	12139333	2L_12139333_SNP [dm3] 2L_12139333_SNP [dm6]	A	T	3.066e^-4	1	INTRON Gr33a
2R	18041326	2R_18041326_DEL [dm3] 2R_22153821_DEL [dm6]	TTAGCATACACTTAATGTGT...	T	3.072e^-4	1	INTRON a
2R	19021830	2R_19021830_SNP [dm3] 2R_23134307_SNP [dm6]	C	G	3.083e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	15873047	X_15873047_SNP [dm3] X_15979014_SNP [dm6]	T	C	3.085e^-4	1	SYNONYMOUS_CODING CG9170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	2475766	2R_2475766_SNP [dm3] 2R_6588261_SNP [dm6]	A	G	3.091e^-4	1	INTRON jing
3R	21091784	3R_21091784_SNP [dm3] 3R_25266062_SNP [dm6]	G	T	3.098e^-4	1	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13851857	2R_13851857_SNP [dm3] 2R_17964352_SNP [dm6]	C	T	3.103e^-4	1	INTERGENIC
X	3947197	X_3947197_SNP [dm3] X_4053164_SNP [dm6]	C	T	3.113e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4945519	3R_4945519_SNP [dm3] 3R_9119797_SNP [dm6]	T	C	3.113e^-4	1	INTRON pum
2R	20372821	2R_20372821_DEL [dm3] 2R_24485298_DEL [dm6]	TACTAAAC	T	3.127e^-4	1	INTRON CG13579
2L	5774003	2L_5774003_SNP [dm3] 2L_5774003_SNP [dm6]	T	C	3.131e^-4	1	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6807523	2L_6807523_SNP [dm3] 2L_6807523_SNP [dm6]	G	A	3.138e^-4	1	INTERGENIC
X	3878588	X_3878588_SNP [dm3] X_3984555_SNP [dm6]	C	T	3.140e^-4	1	INTERGENIC
3R	17292296	3R_17292296_SNP [dm3] 3R_21466574_SNP [dm6]	G	A	3.141e^-4	1	DOWNSTREAM CR43453 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20322137	2L_20322137_SNP [dm3] 2L_20322137_SNP [dm6]	T	G	3.142e^-4	1	INTRON spir	TF binding site mE1_TFBS_cad
2R	2481615	2R_2481615_SNP [dm3] 2R_6594110_SNP [dm6]	C	T	3.146e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	19125638	X_19125638_SNP [dm3] X_19231605_SNP [dm6]	C	A	3.146e^-4	1	INTRON CG7884
2L	14155030	2L_14155030_SNP [dm3] 2L_14155030_SNP [dm6]	G	A	3.156e^-4	1	INTRON CG17341
3L	11672370	3L_11672370_SNP [dm3] 3L_11679270_SNP [dm6]	C	A	3.159e^-4	1	INTRON CG32085
2L	2702032	2L_2702032_SNP [dm3] 2L_2702032_SNP [dm6]	A	G	3.160e^-4	1	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4206466	3L_4206466_DEL [dm3] 3L_4206466_DEL [dm6]	AAA	G	3.167e^-4	1	INTRON CG43367
2R	10475946	2R_10475946_INS [dm3] 2R_14588441_INS [dm6]	A	AG	3.171e^-4	1	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18041317	2R_18041317_SNP [dm3] 2R_22153812_SNP [dm6]	T	G	3.177e^-4	1	INTRON a
2R	11134538	2R_11134538_SNP [dm3] 2R_15247033_SNP [dm6]	T	G	3.182e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	19126865	X_19126865_SNP [dm3] X_19232832_SNP [dm6]	G	A	3.183e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12459765	2R_12459765_SNP [dm3] 2R_16572260_SNP [dm6]	G	A	3.188e^-4	1	SYNONYMOUS_CODING CG4927	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
3L	2979715	3L_2979715_SNP [dm3] 3L_2979715_SNP [dm6]	C	T	3.199e^-4	1	INTERGENIC
3R	22198719	3R_22198719_SNP [dm3] 3R_26372997_SNP [dm6]	C	T	3.205e^-4	1	INTERGENIC
2R	2040193	2R_2040193_SNP [dm3] 2R_6152688_SNP [dm6]	G	A	3.205e^-4	1	UPSTREAM tRNA:N5:42Ag & 1 other DOWNSTREAM tRNA:N5:42Af INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10964703	2L_10964703_SNP [dm3] 2L_10964703_SNP [dm6]	C	G	3.221e^-4	1	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3L	12183069	3L_12183069_SNP [dm3] 3L_12189969_SNP [dm6]	T	C	3.222e^-4	1	NON_SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
3R	6677707	3R_6677707_SNP [dm3] 3R_10851985_SNP [dm6]	G	A	3.223e^-4	1	UPSTREAM CG4565 DOWNSTREAM CG42394 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10472472	2R_10472472_SNP [dm3] 2R_14584967_SNP [dm6]	G	C	3.225e^-4	1	UTR_3_PRIME ttv
2R	14662093	2R_14662093_SNP [dm3] 2R_18774588_SNP [dm6]	T	G	3.230e^-4	1	UTR_3_PRIME Mctp UPSTREAM CR43964
2R	18041397	2R_18041397_SNP [dm3] 2R_22153892_SNP [dm6]	T	G	3.236e^-4	1	INTRON a
2L	10981415	2L_10981415_SNP [dm3] 2L_10981415_SNP [dm6]	G	A	3.237e^-4	1	SYNONYMOUS_CODING SCAR DOWNSTREAM piwi	TF binding site mE1_TFBS_cad
2L	9966604	2L_9966604_SNP [dm3] 2L_9966604_SNP [dm6]	G	A	3.241e^-4	1	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	3634462	2L_3634462_SNP [dm3] 2L_3634462_SNP [dm6]	T	G	3.244e^-4	1	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2619038	3L_2619038_SNP [dm3] 3L_2619038_SNP [dm6]	C	T	3.248e^-4	1	INTRON Pxn
2R	10029224	2R_10029224_INS [dm3] 2R_14141719_INS [dm6]	G	GCTG	3.254e^-4	1	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21289681	3L_21289681_SNP [dm3] 3L_21296581_SNP [dm6]	T	A	3.273e^-4	1	UTR_3_PRIME Cpr78Cb DOWNSTREAM Edg78E
2R	16678228	2R_16678228_SNP [dm3] 2R_20790723_SNP [dm6]	T	A	3.287e^-4	1	SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2L	4136275	2L_4136275_SNP [dm3] 2L_4136275_SNP [dm6]	C	T	3.289e^-4	1	INTERGENIC
2R	5813848	2R_5813848_SNP [dm3] 2R_9926343_SNP [dm6]	A	G	3.295e^-4	1	INTRON Mef2
2R	14662925	2R_14662925_SNP [dm3] 2R_18775420_SNP [dm6]	T	A	3.298e^-4	1	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19241897	2L_19241897_SNP [dm3] 2L_19241897_SNP [dm6]	A	G	3.302e^-4	1	INTERGENIC
2R	13807037	2R_13807037_MNP [dm3] 2R_17919532_MNP [dm6]	ACA	TAT	3.317e^-4	1	INTRON Elk
2R	13807046	2R_13807046_SNP [dm3] 2R_17919541_SNP [dm6]	A	C	3.317e^-4	1	INTRON Elk
2R	10867382	2R_10867382_SNP [dm3] 2R_14979877_SNP [dm6]	C	T	3.318e^-4	1	UTR_3_PRIME ckn
3R	20536989	3R_20536989_SNP [dm3] 3R_24711267_SNP [dm6]	T	C	3.325e^-4	1	UTR_3_PRIME slo DOWNSTREAM slo
3R	10216348	3R_10216348_SNP [dm3] 3R_14390626_SNP [dm6]	C	A	3.326e^-4	1	INTERGENIC
3L	10454366	3L_10454366_SNP [dm3] 3L_10461266_SNP [dm6]	C	T	3.327e^-4	1	NON_SYNONYMOUS_CODING Gem3
X	19128972	X_19128972_INS [dm3] X_19234939_INS [dm6]	G	GG	3.336e^-4	1	INTRON CG7884	TF binding site mE1_TFBS_chinmo
3L	2979703	3L_2979703_SNP [dm3] 3L_2979703_SNP [dm6]	T	G	3.347e^-4	1	INTERGENIC
3L	3580925	3L_3580925_SNP [dm3] 3L_3580925_SNP [dm6]	C	A	3.351e^-4	1	INTRON Eip63E
X	17328553	X_17328553_SNP [dm3] X_17434520_SNP [dm6]	T	C	3.363e^-4	1	INTRON CG12994
2L	9132805	2L_9132805_SNP [dm3] 2L_9132805_SNP [dm6]	A	C	3.385e^-4	1	INTRON CG32982
3L	8004554	3L_8004554_SNP [dm3] 3L_8011454_SNP [dm6]	C	T	3.409e^-4	1	INTRON nmo
3R	8406381	3R_8406381_SNP [dm3] 3R_12580659_SNP [dm6]	C	T	3.421e^-4	1	INTRON Octbeta2R
3R	21091745	3R_21091745_SNP [dm3] 3R_25266023_SNP [dm6]	T	A	3.431e^-4	1	SYNONYMOUS_CODING RIOK2 UPSTREAM Aats-gln DOWNSTREAM CR45214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11781763	X_11781763_SNP [dm3] X_11887730_SNP [dm6]	C	T	3.452e^-4	1	SYNONYMOUS_CODING SelG UPSTREAM CG10353 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	2408068	2R_2408068_SNP [dm3] 2R_6520563_SNP [dm6]	C	A	3.471e^-4	1	INTRON jing	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	2455015	2R_2455015_SNP [dm3] 2R_6567510_SNP [dm6]	C	T	3.474e^-4	1	INTRON jing	TF binding site mE1_TFBS_HSA
3L	1523418	3L_1523418_SNP [dm3] 3L_1523418_SNP [dm6]	G	C	3.484e^-4	1	UTR_3_PRIME CG12090 DOWNSTREAM Psa
2L	14633785	2L_14633785_SNP [dm3] 2L_14633785_SNP [dm6]	A	T	3.485e^-4	1	INTRON osp
3R	10987326	3R_10987326_SNP [dm3] 3R_15161604_SNP [dm6]	C	T	3.497e^-4	1	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi
2R	9209921	2R_9209921_SNP [dm3] 2R_13322416_SNP [dm6]	A	G	3.502e^-4	1	INTERGENIC
3R	11507435	3R_11507435_DEL [dm3] 3R_15681713_DEL [dm6]	GG	G	3.506e^-4	1	INTRON pxb
2R	8732604	2R_8732604_SNP [dm3] 2R_12845099_SNP [dm6]	G	A	3.515e^-4	1	DOWNSTREAM CG17575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4541707	3R_4541707_SNP [dm3] 3R_8715985_SNP [dm6]	G	A	3.521e^-4	1	UPSTREAM CG8116 & 1 other DOWNSTREAM CG8112 INTRON Cks85A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3558912	2L_3558912_SNP [dm3] 2L_3558912_SNP [dm6]	C	T	3.521e^-4	1	INTERGENIC
3R	14440689	3R_14440689_INS [dm3] 3R_18614967_INS [dm6]	T	TT	3.522e^-4	1	INTRON qin & 1 other
2L	14010553	2L_14010553_SNP [dm3] 2L_14010553_SNP [dm6]	C	T	3.523e^-4	1	DOWNSTREAM tRNA:Q:34E INTERGENIC
2R	17541676	2R_17541676_SNP [dm3] 2R_21654171_SNP [dm6]	C	A	3.523e^-4	1	INTRON CG10082
3R	25545542	3R_25545542_SNP [dm3] 3R_29719820_SNP [dm6]	A	T	3.523e^-4	1	INTRON CG15506
X	19124178	X_19124178_SNP [dm3] X_19230145_SNP [dm6]	A	T	3.524e^-4	1	INTRON CG7884
2L	743081	2L_743081_DEL [dm3] 2L_743081_DEL [dm6]	TTCAC	G	3.537e^-4	1	INTRON Eaat2
2R	10058547	2R_10058547_SNP [dm3] 2R_14171042_SNP [dm6]	T	A	3.539e^-4	1	UPSTREAM CG8331 & 1 other DOWNSTREAM CG18324 INTRON CG8331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3599935	2L_3599935_SNP [dm3] 2L_3599935_SNP [dm6]	A	T	3.547e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
X	19134759	X_19134759_SNP [dm3] X_19240726_SNP [dm6]	A	G	3.549e^-4	1	INTRON CG14196
X	19134760	X_19134760_SNP [dm3] X_19240727_SNP [dm6]	C	G	3.549e^-4	1	INTRON CG14196
X	15315524	X_15315524_SNP [dm3] X_15421491_SNP [dm6]	T	A	3.550e^-4	1	UTR_5_PRIME Cngl
2R	6335633	2R_6335633_DEL [dm3] 2R_10448128_DEL [dm6]	ATGTA	A	3.551e^-4	1	INTRON Galphao
2L	10964645	2L_10964645_SNP [dm3] 2L_10964645_SNP [dm6]	G	T	3.553e^-4	1	UPSTREAM dpr2 DOWNSTREAM CG33129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	6718878	2L_6718878_SNP [dm3] 2L_6718878_SNP [dm6]	A	T	3.555e^-4	1	NON_SYNONYMOUS_CODING Aatf DOWNSTREAM homer	TF binding site mE1_TFBS_cad
3L	2979769	3L_2979769_INS [dm3] 3L_2979769_INS [dm6]	T	TTT	3.564e^-4	1	INTERGENIC
2R	10472506	2R_10472506_SNP [dm3] 2R_14585001_SNP [dm6]	A	G	3.565e^-4	1	UTR_3_PRIME ttv
2R	15014704	2R_15014704_SNP [dm3] 2R_19127199_SNP [dm6]	G	T	3.568e^-4	1	UTR_5_PRIME CG15117 UPSTREAM CG15117 INTRON CG15117
2L	3634439	2L_3634439_SNP [dm3] 2L_3634439_SNP [dm6]	A	G	3.569e^-4	1	INTRON for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21429479	X_21429479_SNP [dm3] X_21558452_SNP [dm6]	A	G	3.577e^-4	1	INTERGENIC
X	5542858	X_5542858_SNP [dm3] X_5648825_SNP [dm6]	G	T	3.578e^-4	1	UPSTREAM CG42492 INTERGENIC
2L	12747899	2L_12747899_SNP [dm3] 2L_12747899_SNP [dm6]	G	A	3.583e^-4	1	INTERGENIC
2R	17729555	2R_17729555_SNP [dm3] 2R_21842050_SNP [dm6]	G	A	3.584e^-4	1	INTERGENIC
X	16098322	X_16098322_SNP [dm3] X_16204289_SNP [dm6]	A	T	3.584e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	4259673	2L_4259673_SNP [dm3] 2L_4259673_SNP [dm6]	G	A	3.595e^-4	1	DOWNSTREAM CR44080 INTERGENIC
3R	10946818	3R_10946818_SNP [dm3] 3R_15121096_SNP [dm6]	T	G	3.617e^-4	1	INTRON CG42788
3L	10548645	3L_10548645_SNP [dm3] 3L_10555545_SNP [dm6]	A	G	3.631e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14663051	2R_14663051_SNP [dm3] 2R_18775546_SNP [dm6]	T	A	3.637e^-4	1	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1
2R	13807054	2R_13807054_SNP [dm3] 2R_17919549_SNP [dm6]	A	G	3.642e^-4	1	INTRON Elk
X	19126460	X_19126460_SNP [dm3] X_19232427_SNP [dm6]	G	A	3.645e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	14843990	X_14843990_SNP [dm3] X_14949957_SNP [dm6]	T	A	3.647e^-4	1	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
2R	19493123	2R_19493123_INS [dm3] 2R_23605600_INS [dm6]	C	CC	3.648e^-4	1	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
3L	2598770	3L_2598770_SNP [dm3] 3L_2598770_SNP [dm6]	G	C	3.649e^-4	1	NON_SYNONYMOUS_CODING CG12182 UPSTREAM CG16985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23054997	3R_23054997_SNP [dm3] 3R_27229275_SNP [dm6]	T	C	3.653e^-4	1	NON_SYNONYMOUS_CODING CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad
2R	11388899	2R_11388899_SNP [dm3] 2R_15501394_SNP [dm6]	G	A	3.654e^-4	1	NON_SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
3L	2980192	3L_2980192_SNP [dm3] 3L_2980192_SNP [dm6]	T	G	3.657e^-4	1	UPSTREAM CG2107 INTERGENIC
2L	4432957	2L_4432957_INS [dm3] 2L_4432957_INS [dm6]	T	TAAAACACT	3.675e^-4	1	UPSTREAM CG34177 & 1 other INTRON CG15431
2R	14663523	2R_14663523_SNP [dm3] 2R_18776018_SNP [dm6]	G	A	3.690e^-4	1	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	14375762	X_14375762_SNP [dm3] X_14481729_SNP [dm6]	A	G	3.698e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16630519	3R_16630519_SNP [dm3] 3R_20804797_SNP [dm6]	A	G	3.699e^-4	1	UTR_3_PRIME Syp INTRON Syp	TF binding site mE1_TFBS_sens
3L	7172640	3L_7172640_SNP [dm3] 3L_7179540_SNP [dm6]	A	C	3.702e^-4	1	INTRON Dscam2
2R	6862655	2R_6862655_SNP [dm3] 2R_10975150_SNP [dm6]	G	C	3.702e^-4	1	INTERGENIC
2L	7872604	2L_7872604_SNP [dm3] 2L_7872604_SNP [dm6]	C	A	3.705e^-4	1	UPSTREAM tRNA:G3:28D & 1 other DOWNSTREAM spz3 INTERGENIC
X	4062933	X_4062933_SNP [dm3] X_4168900_SNP [dm6]	T	C	3.707e^-4	1	INTRON Fas2
2R	17571227	2R_17571227_SNP [dm3] 2R_21683722_SNP [dm6]	C	A	3.710e^-4	1	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13410735	3R_13410735_SNP [dm3] 3R_17585013_SNP [dm6]	A	C	3.711e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	2474363	2R_2474363_SNP [dm3] 2R_6586858_SNP [dm6]	C	T	3.712e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18808781	2R_18808781_SNP [dm3] 2R_22921258_SNP [dm6]	G	A	3.715e^-4	1	NON_SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_chinmo
2L	14755679	2L_14755679_SNP [dm3] 2L_14755679_SNP [dm6]	G	A	3.715e^-4	1	INTERGENIC
2R	20146172	2R_20146172_INS [dm3] 2R_24258649_INS [dm6]	C	CC	3.724e^-4	1	INTRON CG3376
X	19125771	X_19125771_SNP [dm3] X_19231738_SNP [dm6]	A	G	3.737e^-4	1	INTRON CG7884
3R	23199134	3R_23199134_SNP [dm3] 3R_27373412_SNP [dm6]	C	T	3.748e^-4	1	DOWNSTREAM CG42534 INTERGENIC
2R	1981782	2R_1981782_SNP [dm3] 2R_6094277_SNP [dm6]	A	T	3.751e^-4	1	INTRON EcR
3L	19176507	3L_19176507_SNP [dm3] 3L_19183407_SNP [dm6]	A	C	3.752e^-4	1	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3L	12183047	3L_12183047_SNP [dm3] 3L_12189947_SNP [dm6]	G	T	3.761e^-4	1	NON_SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
3R	6078980	3R_6078980_SNP [dm3] 3R_10253258_SNP [dm6]	G	C	3.761e^-4	1	NON_SYNONYMOUS_CODING CG3999
2L	12309040	2L_12309040_SNP [dm3] 2L_12309040_SNP [dm6]	A	G	3.764e^-4	1	INTRON aret
2L	7851128	2L_7851128_SNP [dm3] 2L_7851128_SNP [dm6]	A	G	3.766e^-4	1	INTRON CG14535
X	19129010	X_19129010_SNP [dm3] X_19234977_SNP [dm6]	T	A	3.783e^-4	1	INTRON CG7884	TF binding site mE1_TFBS_chinmo
3R	13421016	3R_13421016_SNP [dm3] 3R_17595294_SNP [dm6]	G	A	3.784e^-4	1	UPSTREAM Sgs5 DOWNSTREAM CG7587 INTERGENIC
3L	12111871	3L_12111871_SNP [dm3] 3L_12118771_SNP [dm6]	T	C	3.786e^-4	1	SYNONYMOUS_CODING ssp DOWNSTREAM l_3_j2D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2482496	3L_2482496_DEL [dm3] 3L_2482496_DEL [dm6]	AA	A	3.796e^-4	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9979829	2R_9979829_SNP [dm3] 2R_14092324_SNP [dm6]	C	T	3.798e^-4	1	UTR_5_PRIME Prosap DOWNSTREAM CG42288
2R	17918359	2R_17918359_SNP [dm3] 2R_22030854_SNP [dm6]	C	G	3.800e^-4	1	INTRON CG34370
2R	14660867	2R_14660867_SNP [dm3] 2R_18773362_SNP [dm6]	G	C	3.802e^-4	1	INTRON Mctp
X	8298737	X_8298737_SNP [dm3] X_8404704_SNP [dm6]	T	C	3.814e^-4	1	UTR_3_PRIME CG11190 DOWNSTREAM CG10555	TF binding site mE1_TFBS_cad
2L	12406586	2L_12406586_SNP [dm3] 2L_12406586_SNP [dm6]	G	T	3.822e^-4	1	DOWNSTREAM vir-1 INTRON vir-1
2L	6958742	2L_6958742_SNP [dm3] 2L_6958742_SNP [dm6]	G	A	3.826e^-4	1	SYNONYMOUS_CODING CG3430 DOWNSTREAM Atac1
3L	14277536	3L_14277536_SNP [dm3] 3L_14284436_SNP [dm6]	A	C	3.827e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_da
2R	18081613	2R_18081613_SNP [dm3] 2R_22194108_SNP [dm6]	A	T	3.831e^-4	1	UPSTREAM Swim INTRON Swim
3R	23569249	3R_23569249_SNP [dm3] 3R_27743527_SNP [dm6]	T	A	3.837e^-4	1	INTRON Ets98B
3L	20523660	3L_20523660_SNP [dm3] 3L_20530560_SNP [dm6]	C	T	3.845e^-4	1	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl
X	18439533	X_18439533_SNP [dm3] X_18545500_SNP [dm6]	G	A	3.848e^-4	1	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6353716	2L_6353716_SNP [dm3] 2L_6353716_SNP [dm6]	T	A	3.852e^-4	1	NON_SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11785645	2L_11785645_SNP [dm3] 2L_11785645_SNP [dm6]	T	C	3.852e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7902978	3L_7902978_SNP [dm3] 3L_7909878_SNP [dm6]	G	A	3.853e^-4	1	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	13409003	3R_13409003_SNP [dm3] 3R_17583281_SNP [dm6]	A	G	3.856e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4341192	3R_4341192_SNP [dm3] 3R_8515470_SNP [dm6]	G	A	3.860e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13464191	2L_13464191_DEL [dm3] 2L_13464191_DEL [dm6]	TAATGTAGTTTAGAAAAT...	T	3.868e^-4	1	INTRON CG42784
X	17341779	X_17341779_SNP [dm3] X_17447746_SNP [dm6]	T	G	3.868e^-4	1	INTRON p-cup	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	9929685	X_9929685_SNP [dm3] X_10035652_SNP [dm6]	C	A	3.869e^-4	1	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2482501	3L_2482501_SNP [dm3] 3L_2482501_SNP [dm6]	T	C	3.874e^-4	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13409074	3R_13409074_SNP [dm3] 3R_17583352_SNP [dm6]	C	T	3.875e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13464164	2L_13464164_SNP [dm3] 2L_13464164_SNP [dm6]	G	A	3.877e^-4	1	INTRON CG42784
X	10273901	X_10273901_SNP [dm3] X_10379868_SNP [dm6]	T	C	3.896e^-4	1	SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	22077208	2L_22077208_SNP [dm3] 2L_22077208_SNP [dm6]	T	A	3.898e^-4	1	INTERGENIC
X	17000119	X_17000119_SNP [dm3] X_17106086_SNP [dm6]	G	A	3.902e^-4	1	UPSTREAM Arpc3B INTERGENIC
2R	10472455	2R_10472455_SNP [dm3] 2R_14584950_SNP [dm6]	T	A	3.903e^-4	1	UTR_3_PRIME ttv
2R	2478138	2R_2478138_SNP [dm3] 2R_6590633_SNP [dm6]	T	C	3.904e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14669882	2R_14669882_INS [dm3] 2R_18782377_INS [dm6]	A	ATTACTTAAAATATTATAAA...	3.909e^-4	1	UPSTREAM CG15080 INTERGENIC
2L	7079990	2L_7079990_SNP [dm3] 2L_7079990_SNP [dm6]	C	T	3.912e^-4	1	UPSTREAM CR44611 INTRON Pvf2
3L	14710206	3L_14710206_SNP [dm3] 3L_14717106_SNP [dm6]	G	A	3.915e^-4	1	INTRON ome	regulatory region REDfly_CRMs
3R	26157778	3R_26157778_SNP [dm3] 3R_30332056_SNP [dm6]	A	G	3.920e^-4	1	INTRON hdc
2L	3884986	2L_3884986_SNP [dm3] 2L_3884986_SNP [dm6]	G	C	3.921e^-4	1	INTRON capu
2R	2077033	2R_2077033_SNP [dm3] 2R_6189528_SNP [dm6]	C	G	3.931e^-4	1	UPSTREAM tRNA:N5:42Ad DOWNSTREAM tRNA:N5:42Ae INTRON Ptr	TF binding site BDTNP1_TFBS_dl
3R	5359661	3R_5359661_SNP [dm3] 3R_9533939_SNP [dm6]	A	C	3.931e^-4	1	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2416007	3L_2416007_SNP [dm3] 3L_2416007_SNP [dm6]	G	A	3.940e^-4	1	INTRON CG45186
2L	17696918	2L_17696918_SNP [dm3] 2L_17696918_SNP [dm6]	A	G	3.948e^-4	1	INTRON CadN
2R	10820945	2R_10820945_SNP [dm3] 2R_14933440_SNP [dm6]	T	A	3.952e^-4	1	UPSTREAM CG12853 & 1 other INTRON CG10253	TF binding site mE1_TFBS_Trl
3R	15262168	3R_15262168_DEL [dm3] 3R_19436446_DEL [dm6]	CACATA	C	3.959e^-4	1	INTRON CG31221
2R	2476210	2R_2476210_SNP [dm3] 2R_6588705_SNP [dm6]	T	C	3.964e^-4	1	INTRON jing
2R	8638526	2R_8638526_SNP [dm3] 2R_12751021_SNP [dm6]	T	C	3.965e^-4	1	UTR_3_PRIME CG42663 DOWNSTREAM mos
3R	9543802	3R_9543802_SNP [dm3] 3R_13718080_SNP [dm6]	A	T	3.977e^-4	1	INTRON CG34383 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16260345	2L_16260345_SNP [dm3] 2L_16260345_SNP [dm6]	A	G	3.979e^-4	1	SYNONYMOUS_CODING twe DOWNSTREAM EndoGI	TF binding site mE1_TFBS_cad
3L	3704653	3L_3704653_SNP [dm3] 3L_3704653_SNP [dm6]	G	T	3.983e^-4	1	INTERGENIC
2R	2458395	2R_2458395_SNP [dm3] 2R_6570890_SNP [dm6]	T	C	3.984e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	12267140	2L_12267140_SNP [dm3] 2L_12267140_SNP [dm6]	G	C	3.995e^-4	1	INTRON aret
2L	3941004	2L_3941004_SNP [dm3] 2L_3941004_SNP [dm6]	G	T	4.001e^-4	1	INTRON fred
2R	2482212	2R_2482212_SNP [dm3] 2R_6594707_SNP [dm6]	T	G	4.004e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18402369	X_18402369_SNP [dm3] X_18508336_SNP [dm6]	G	A	4.015e^-4	1	SYNONYMOUS_CODING Ggt-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12681366	2L_12681366_SNP [dm3] 2L_12681366_SNP [dm6]	C	A	4.031e^-4	1	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26938645	3R_26938645_SNP [dm3] 3R_31112923_SNP [dm6]	A	G	4.055e^-4	1	INTERGENIC
X	16990264	X_16990264_SNP [dm3] X_17096231_SNP [dm6]	A	T	4.058e^-4	1	INTRON CG4991 & 1 other	TF binding site mE1_TFBS_sens
3R	4941775	3R_4941775_SNP [dm3] 3R_9116053_SNP [dm6]	C	G	4.070e^-4	1	INTRON pum
2R	19039961	2R_19039961_SNP [dm3] 2R_23152438_SNP [dm6]	C	T	4.071e^-4	1	UPSTREAM CG43207 INTERGENIC
3R	22520280	3R_22520280_SNP [dm3] 3R_26694558_SNP [dm6]	G	C	4.083e^-4	1	UPSTREAM TwdlQ INTERGENIC
3L	1523408	3L_1523408_SNP [dm3] 3L_1523408_SNP [dm6]	T	C	4.085e^-4	1	DOWNSTREAM CG12090 & 1 other INTERGENIC
2R	9601147	2R_9601147_SNP [dm3] 2R_13713642_SNP [dm6]	A	G	4.086e^-4	1	INTRON fas
2L	12805812	2L_12805812_SNP [dm3] 2L_12805812_SNP [dm6]	T	A	4.099e^-4	1	INTERGENIC
2L	20858593	2L_20858593_SNP [dm3] 2L_20858593_SNP [dm6]	T	A	4.106e^-4	1	UPSTREAM CG9336 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
X	3379471	X_3379471_SNP [dm3] X_3485438_SNP [dm6]	C	G	4.108e^-4	1	UPSTREAM CG10803 & 1 other DOWNSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	25351220	3R_25351220_SNP [dm3] 3R_29525498_SNP [dm6]	G	A	4.108e^-4	1	INTERGENIC
X	14757022	X_14757022_SNP [dm3] X_14862989_SNP [dm6]	C	T	4.109e^-4	1	UTR_3_PRIME CG9518 INTRON Flo2
3R	10982746	3R_10982746_SNP [dm3] 3R_15157024_SNP [dm6]	C	T	4.121e^-4	1	INTRON Gyc88E
3L	1523390	3L_1523390_SNP [dm3] 3L_1523390_SNP [dm6]	C	T	4.121e^-4	1	DOWNSTREAM CG12090 & 1 other INTERGENIC
3R	22177048	3R_22177048_SNP [dm3] 3R_26351326_SNP [dm6]	C	T	4.122e^-4	1	INTRON CG33970
3R	9542224	3R_9542224_SNP [dm3] 3R_13716502_SNP [dm6]	G	T	4.140e^-4	1	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2L	6807480	2L_6807480_SNP [dm3] 2L_6807480_SNP [dm6]	A	G	4.147e^-4	1	INTERGENIC
2L	20292139	2L_20292139_SNP [dm3] 2L_20292139_SNP [dm6]	A	C	4.155e^-4	1	INTERGENIC
X	19134349	X_19134349_SNP [dm3] X_19240316_SNP [dm6]	A	C	4.157e^-4	1	INTRON CG14196
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	4.157e^-4	1	INTRON bbg
2R	2479146	2R_2479146_SNP [dm3] 2R_6591641_SNP [dm6]	A	T	4.159e^-4	1	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25113621	3R_25113621_SNP [dm3] 3R_29287899_SNP [dm6]	A	T	4.162e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3596732	2L_3596732_SNP [dm3] 2L_3596732_SNP [dm6]	A	T	4.166e^-4	1	INTERGENIC
2L	14502714	2L_14502714_SNP [dm3] 2L_14502714_SNP [dm6]	A	C	4.169e^-4	1	INTERGENIC
3R	13421074	3R_13421074_SNP [dm3] 3R_17595352_SNP [dm6]	A	G	4.172e^-4	1	UPSTREAM Sgs5 DOWNSTREAM CG7587 INTERGENIC
2R	13807100	2R_13807100_SNP [dm3] 2R_17919595_SNP [dm6]	A	G	4.185e^-4	1	INTRON Elk
2L	11187144	2L_11187144_SNP [dm3] 2L_11187144_SNP [dm6]	A	G	4.187e^-4	1	INTRON Ca-beta
2R	20367309	2R_20367309_SNP [dm3] 2R_24479786_SNP [dm6]	T	A	4.194e^-4	1	INTRON CG13579
2R	14659070	2R_14659070_SNP [dm3] 2R_18771565_SNP [dm6]	T	C	4.214e^-4	1	START_GAINED Mctp UTR_5_PRIME Mctp INTRON Mctp
2R	2465738	2R_2465738_SNP [dm3] 2R_6578233_SNP [dm6]	G	T	4.215e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10031189	2R_10031189_SNP [dm3] 2R_14143684_SNP [dm6]	C	T	4.216e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	12609855	X_12609855_SNP [dm3] X_12715822_SNP [dm6]	A	G	4.220e^-4	1	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	22077201	2L_22077201_SNP [dm3] 2L_22077201_SNP [dm6]	T	A	4.221e^-4	1	INTERGENIC
2R	2458452	2R_2458452_SNP [dm3] 2R_6570947_SNP [dm6]	T	C	4.225e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3503230	2L_3503230_SNP [dm3] 2L_3503230_SNP [dm6]	G	T	4.230e^-4	1	INTRON tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12303761	X_12303761_SNP [dm3] X_12409728_SNP [dm6]	T	A	4.233e^-4	1	SYNONYMOUS_CODING CG2574
3R	4901572	3R_4901572_SNP [dm3] 3R_9075850_SNP [dm6]	C	T	4.237e^-4	1	INTRON pum
2L	6955965	2L_6955965_SNP [dm3] 2L_6955965_SNP [dm6]	C	T	4.243e^-4	1	SYNONYMOUS_CODING CG13775	TF binding site BDTNP1_TFBS_twi
3R	27092775	3R_27092775_SNP [dm3] 3R_31267053_SNP [dm6]	T	C	4.248e^-4	1	INTRON ppk24
2R	17896389	2R_17896389_SNP [dm3] 2R_22008884_SNP [dm6]	T	A	4.258e^-4	1	INTRON CG34370
2L	18513489	2L_18513489_INS [dm3] 2L_18513489_INS [dm6]	A	AA	4.261e^-4	1	UTR_3_PRIME CG10178 DOWNSTREAM CG10178
2L	7443009	2L_7443009_DEL [dm3] 2L_7443009_DEL [dm6]	TCAGCACTCAAACTCT...	C	4.262e^-4	1	UPSTREAM CG5973 INTRON CG5973
2R	17119362	2R_17119362_SNP [dm3] 2R_21231857_SNP [dm6]	G	A	4.270e^-4	1	INTRON ASPP
3L	6056236	3L_6056236_SNP [dm3] 3L_6063136_SNP [dm6]	C	T	4.273e^-4	1	UPSTREAM CG10472 INTERGENIC
X	7881150	X_7881150_SNP [dm3] X_7987117_SNP [dm6]	A	G	4.277e^-4	1	DOWNSTREAM sn INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13464300	2L_13464300_SNP [dm3] 2L_13464300_SNP [dm6]	A	T	4.285e^-4	1	INTRON CG42784
2L	6955959	2L_6955959_SNP [dm3] 2L_6955959_SNP [dm6]	A	C	4.285e^-4	1	SYNONYMOUS_CODING CG13775	TF binding site BDTNP1_TFBS_twi
2R	14886461	2R_14886461_SNP [dm3] 2R_18998956_SNP [dm6]	C	A	4.288e^-4	1	INTRON tn
2R	15002119	2R_15002119_SNP [dm3] 2R_19114614_SNP [dm6]	C	T	4.298e^-4	1	INTRON 5-HT1A
3L	9160494	3L_9160494_SNP [dm3] 3L_9167394_SNP [dm6]	C	T	4.323e^-4	1	INTRON Rdl
3R	19649946	3R_19649946_SNP [dm3] 3R_23824224_SNP [dm6]	A	T	4.326e^-4	1	INTRON CG34355
2R	10030914	2R_10030914_SNP [dm3] 2R_14143409_SNP [dm6]	T	C	4.329e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8466587	2L_8466587_SNP [dm3] 2L_8466587_SNP [dm6]	T	A	4.331e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
3R	24200228	3R_24200228_SNP [dm3] 3R_28374506_SNP [dm6]	A	T	4.347e^-4	1	INTERGENIC
X	19126994	X_19126994_SNP [dm3] X_19232961_SNP [dm6]	C	T	4.357e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15002117	2R_15002117_INS [dm3] 2R_19114612_INS [dm6]	G	GT	4.363e^-4	1	INTRON 5-HT1A
3R	21991847	3R_21991847_SNP [dm3] 3R_26166125_SNP [dm6]	G	C	4.368e^-4	1	INTERGENIC
X	19108852	X_19108852_SNP [dm3] X_19214819_SNP [dm6]	G	A	4.374e^-4	1	UTR_3_PRIME Mur18B UPSTREAM Muc18B	TF binding site mE1_TFBS_chinmo
2L	12747298	2L_12747298_SNP [dm3] 2L_12747298_SNP [dm6]	A	T	4.385e^-4	1	INTERGENIC
3R	26181002	3R_26181002_SNP [dm3] 3R_30355280_SNP [dm6]	C	G	4.395e^-4	1	INTRON hdc
3L	4811194	3L_4811194_SNP [dm3] 3L_4811194_SNP [dm6]	C	T	4.396e^-4	1	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_HSA
X	18439497	X_18439497_SNP [dm3] X_18545464_SNP [dm6]	C	T	4.397e^-4	1	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15522030	X_15522030_INS [dm3] X_15627997_INS [dm6]	A	ACATA	4.398e^-4	1	INTRON sog	TF binding site BDTNP1_TFBS_dl
2L	9132478	2L_9132478_SNP [dm3] 2L_9132478_SNP [dm6]	T	C	4.398e^-4	1	INTRON CG32982
3L	5975984	3L_5975984_SNP [dm3] 3L_5982884_SNP [dm6]	C	A	4.410e^-4	1	DOWNSTREAM CR45439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
X	18215865	X_18215865_SNP [dm3] X_18321832_SNP [dm6]	A	G	4.414e^-4	1	UPSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14659946	2R_14659946_SNP [dm3] 2R_18772441_SNP [dm6]	C	A	4.421e^-4	1	SYNONYMOUS_CODING Mctp
2R	10033942	2R_10033942_SNP [dm3] 2R_14146437_SNP [dm6]	T	A	4.424e^-4	1	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7796354	3L_7796354_SNP [dm3] 3L_7803254_SNP [dm6]	C	T	4.427e^-4	1	INTRON CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2444591	2R_2444591_SNP [dm3] 2R_6557086_SNP [dm6]	C	T	4.429e^-4	1	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23164414	3R_23164414_INS [dm3] 3R_27338692_INS [dm6]	G	GG	4.434e^-4	1	INTERGENIC
3R	15262350	3R_15262350_SNP [dm3] 3R_19436628_SNP [dm6]	C	G	4.444e^-4	1	INTRON CG31221
2R	17570801	2R_17570801_SNP [dm3] 2R_21683296_SNP [dm6]	A	T	4.460e^-4	1	INTRON CG30263	TF binding site mE1_TFBS_cad
2L	3884991	2L_3884991_SNP [dm3] 2L_3884991_SNP [dm6]	A	C	4.466e^-4	1	INTRON capu
3R	17322137	3R_17322137_SNP [dm3] 3R_21496415_SNP [dm6]	C	T	4.467e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16015183	2L_16015183_SNP [dm3] 2L_16015183_SNP [dm6]	G	A	4.467e^-4	1	INTRON beat-Ic
2L	20480504	2L_20480504_SNP [dm3] 2L_20480504_SNP [dm6]	C	G	4.469e^-4	1	INTRON CR44980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15175508	3R_15175508_SNP [dm3] 3R_19349786_SNP [dm6]	C	T	4.473e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	17803729	3R_17803729_SNP [dm3] 3R_21978007_SNP [dm6]	G	A	4.477e^-4	1	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl
3R	23201900	3R_23201900_SNP [dm3] 3R_27376178_SNP [dm6]	A	G	4.484e^-4	1	UTR_3_PRIME side
3L	12418250	3L_12418250_SNP [dm3] 3L_12425150_SNP [dm6]	G	A	4.488e^-4	1	INTRON toe	TF binding site mE1_TFBS_cad
2R	16967221	2R_16967221_INS [dm3] 2R_21079716_INS [dm6]	A	AGGCAAATAACAAATTAAGA...	4.496e^-4	1	UPSTREAM Treh INTRON Treh
3L	18280189	3L_18280189_SNP [dm3] 3L_18287089_SNP [dm6]	A	C	4.497e^-4	1	INTERGENIC
3L	19432288	3L_19432288_INS [dm3] 3L_19439188_INS [dm6]	A	AA	4.497e^-4	1	DOWNSTREAM CR45732 INTERGENIC
3R	9656110	3R_9656110_SNP [dm3] 3R_13830388_SNP [dm6]	C	T	4.498e^-4	1	INTERGENIC
2L	14355808	2L_14355808_SNP [dm3] 2L_14355808_SNP [dm6]	G	T	4.520e^-4	1	UPSTREAM l_2_34Fd INTRON Rab14 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5813836	2R_5813836_SNP [dm3] 2R_9926331_SNP [dm6]	T	G	4.527e^-4	1	INTRON Mef2
3L	12836357	3L_12836357_SNP [dm3] 3L_12843257_SNP [dm6]	A	G	4.532e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24821508	3R_24821508_SNP [dm3] 3R_28995786_SNP [dm6]	A	T	4.532e^-4	1	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6056220	3L_6056220_SNP [dm3] 3L_6063120_SNP [dm6]	T	C	4.533e^-4	1	UPSTREAM CG10472 INTERGENIC
2L	20292183	2L_20292183_SNP [dm3] 2L_20292183_SNP [dm6]	T	A	4.536e^-4	1	INTERGENIC
3R	15175357	3R_15175357_SNP [dm3] 3R_19349635_SNP [dm6]	T	G	4.538e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4242419	2L_4242419_SNP [dm3] 2L_4242419_SNP [dm6]	A	C	4.539e^-4	1	DOWNSTREAM CR44058 INTERGENIC
2L	6957085	2L_6957085_SNP [dm3] 2L_6957085_SNP [dm6]	C	T	4.541e^-4	1	START_GAINED CG3430 UTR_5_PRIME CG3430 UPSTREAM CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	10984786	2L_10984786_SNP [dm3] 2L_10984786_SNP [dm6]	G	T	4.542e^-4	1	INTRON piwi	transposable element FlyBase
2L	4493311	2L_4493311_SNP [dm3] 2L_4493311_SNP [dm6]	A	G	4.548e^-4	1	SYNONYMOUS_CODING dp INTRON dp
2L	2835222	2L_2835222_SNP [dm3] 2L_2835222_SNP [dm6]	T	A	4.555e^-4	1	DOWNSTREAM CG3119 INTRON CG3119
2R	19975263	2R_19975263_SNP [dm3] 2R_24087740_SNP [dm6]	T	A	4.556e^-4	1	INTRON snama
2R	19975264	2R_19975264_SNP [dm3] 2R_24087741_SNP [dm6]	T	G	4.556e^-4	1	INTRON snama
3L	12247075	3L_12247075_SNP [dm3] 3L_12253975_SNP [dm6]	C	T	4.557e^-4	1	INTRON app
2L	12680156	2L_12680156_SNP [dm3] 2L_12680156_SNP [dm6]	C	T	4.561e^-4	1	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	11610517	2R_11610517_SNP [dm3] 2R_15723012_SNP [dm6]	C	A	4.565e^-4	1	INTERGENIC
2L	18711523	2L_18711523_SNP [dm3] 2L_18711523_SNP [dm6]	C	T	4.566e^-4	1	SYNONYMOUS_CODING Irk3 DOWNSTREAM Grip71
X	3856421	X_3856421_SNP [dm3] X_3962388_SNP [dm6]	A	G	4.578e^-4	1	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_sens
2L	15566690	2L_15566690_INS [dm3] 2L_15566690_INS [dm6]	GA	TTTCCATTGTTTTG...	4.588e^-4	1	INTRON kek3
X	15263354	X_15263354_SNP [dm3] X_15369321_SNP [dm6]	T	A	4.604e^-4	1	INTRON acj6
3L	1961124	3L_1961124_SNP [dm3] 3L_1961124_SNP [dm6]	G	A	4.605e^-4	1	SYNONYMOUS_CODING mv
3R	19446213	3R_19446213_SNP [dm3] 3R_23620491_SNP [dm6]	A	G	4.611e^-4	1	INTRON CG31145
2R	18455199	2R_18455199_SNP [dm3] 2R_22567694_SNP [dm6]	A	T	4.614e^-4	1	INTRON dnr1
2R	7944232	2R_7944232_SNP [dm3] 2R_12056727_SNP [dm6]	G	A	4.621e^-4	1	DOWNSTREAM CG44314 INTRON Drep-3
2R	16291298	2R_16291298_SNP [dm3] 2R_20403793_SNP [dm6]	A	G	4.639e^-4	1	INTERGENIC
2R	14886469	2R_14886469_SNP [dm3] 2R_18998964_SNP [dm6]	T	C	4.646e^-4	1	INTRON tn
3R	16254275	3R_16254275_SNP [dm3] 3R_20428553_SNP [dm6]	A	T	4.649e^-4	1	INTRON Gfrl
2R	13709282	2R_13709282_DEL [dm3] 2R_17821777_DEL [dm6]	TAAAGAAAATGTGAAAAGAT...	T	4.653e^-4	1	INTRON grh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2L	13464220	2L_13464220_INS [dm3] 2L_13464220_INS [dm6]	A	TT	4.656e^-4	1	INTRON CG42784
3R	10286238	3R_10286238_SNP [dm3] 3R_14460516_SNP [dm6]	G	T	4.666e^-4	1	INTRON cv-c
2R	8827765	2R_8827765_SNP [dm3] 2R_12940260_SNP [dm6]	T	C	4.677e^-4	1	SYNONYMOUS_CODING Sans DOWNSTREAM Mdr49	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17808455	2R_17808455_SNP [dm3] 2R_21920950_SNP [dm6]	A	G	4.678e^-4	1	INTRON Fili	TF binding site mE1_TFBS_inv
X	17306297	X_17306297_SNP [dm3] X_17412264_SNP [dm6]	A	C	4.692e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17328503	X_17328503_DEL [dm3] X_17434470_DEL [dm6]	TACTACCTAAAACGCTAAGT...	G	4.703e^-4	1	INTRON CG12994
3R	19446540	3R_19446540_SNP [dm3] 3R_23620818_SNP [dm6]	A	C	4.705e^-4	1	INTRON CG31145
2R	16626248	2R_16626248_SNP [dm3] 2R_20738743_SNP [dm6]	T	C	4.706e^-4	1	INTRON dpr
2R	9635578	2R_9635578_SNP [dm3] 2R_13748073_SNP [dm6]	T	A	4.708e^-4	1	UTR_3_PRIME fas
2L	9167131	2L_9167131_SNP [dm3] 2L_9167131_SNP [dm6]	A	G	4.717e^-4	1	UTR_5_PRIME tai UPSTREAM CG9586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15245456	2R_15245456_SNP [dm3] 2R_19357951_SNP [dm6]	A	T	4.720e^-4	1	UPSTREAM CG11961 INTRON CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	5817783	2R_5817783_SNP [dm3] 2R_9930278_SNP [dm6]	C	A	4.735e^-4	1	UPSTREAM Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13031454	2L_13031454_SNP [dm3] 2L_13031454_SNP [dm6]	T	A	4.737e^-4	1	INTRON CG9932	TF binding site mE1_TFBS_cad
2L	16614686	2L_16614686_SNP [dm3] 2L_16614686_SNP [dm6]	C	A	4.738e^-4	1	INTRON CG42389
2L	13464085	2L_13464085_SNP [dm3] 2L_13464085_SNP [dm6]	C	T	4.738e^-4	1	INTRON CG42784
2R	20367850	2R_20367850_SNP [dm3] 2R_24480327_SNP [dm6]	A	T	4.741e^-4	1	INTRON CG13579
2R	14562810	2R_14562810_SNP [dm3] 2R_18675305_SNP [dm6]	G	T	4.745e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4740342	3R_4740342_SNP [dm3] 3R_8914620_SNP [dm6]	T	A	4.746e^-4	1	INTRON pyd
3R	4740344	3R_4740344_SNP [dm3] 3R_8914622_SNP [dm6]	T	A	4.746e^-4	1	INTRON pyd
2R	15245458	2R_15245458_DEL [dm3] 2R_19357953_DEL [dm6]	ATAC	A	4.750e^-4	1	UPSTREAM CG11961 INTRON CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	18748903	X_18748903_SNP [dm3] X_18854870_SNP [dm6]	T	G	4.757e^-4	1	NON_SYNONYMOUS_CODING CG34422	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	13807041	2R_13807041_SNP [dm3] 2R_17919536_SNP [dm6]	C	A	4.771e^-4	1	INTRON Elk
2R	14886552	2R_14886552_DEL [dm3] 2R_18999047_DEL [dm6]	AAATTCA	A	4.772e^-4	1	INTRON tn
2R	16296618	2R_16296618_SNP [dm3] 2R_20409113_SNP [dm6]	C	G	4.782e^-4	1	INTERGENIC
3L	2482434	3L_2482434_DEL [dm3] 3L_2482434_DEL [dm6]	TCAGT	T	4.792e^-4	1	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10344191	3R_10344191_SNP [dm3] 3R_14518469_SNP [dm6]	G	A	4.801e^-4	1	SYNONYMOUS_CODING Pde6 DOWNSTREAM CG34273
2L	7406275	2L_7406275_SNP [dm3] 2L_7406275_SNP [dm6]	A	T	4.801e^-4	1	INTRON CG5177
2L	3643651	2L_3643651_SNP [dm3] 2L_3643651_SNP [dm6]	T	C	4.802e^-4	1	INTRON for	TF binding site BDTNP1_TFBS_dl
3R	22443153	3R_22443153_SNP [dm3] 3R_26617431_SNP [dm6]	C	G	4.804e^-4	1	INTERGENIC
2L	14502724	2L_14502724_SNP [dm3] 2L_14502724_SNP [dm6]	A	T	4.805e^-4	1	INTERGENIC
2L	14014281	2L_14014281_SNP [dm3] 2L_14014281_SNP [dm6]	T	C	4.811e^-4	1	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9799860	2R_9799860_SNP [dm3] 2R_13912355_SNP [dm6]	A	G	4.817e^-4	1	INTRON shot	TF binding site BDTNP1_TFBS_twi
3L	14291947	3L_14291947_SNP [dm3] 3L_14298847_SNP [dm6]	G	C	4.830e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8018192	X_8018192_SNP [dm3] X_8124159_SNP [dm6]	T	C	4.832e^-4	1	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10548943	3L_10548943_SNP [dm3] 3L_10555843_SNP [dm6]	G	T	4.835e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	7276901	3L_7276901_SNP [dm3] 3L_7283801_SNP [dm6]	C	A	4.841e^-4	1	INTRON unc-13-4A
2L	9990409	2L_9990409_DEL [dm3] 2L_9990409_DEL [dm6]	TC	T	4.843e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16290759	X_16290759_SNP [dm3] X_16396726_SNP [dm6]	C	A	4.848e^-4	1	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3L	11809571	3L_11809571_SNP [dm3] 3L_11816471_SNP [dm6]	T	C	4.848e^-4	1	UTR_3_PRIME CG14130 DOWNSTREAM CG5946
X	10155747	X_10155747_SNP [dm3] X_10261714_SNP [dm6]	G	A	4.849e^-4	1	UPSTREAM Hk INTRON Hk EXON CR43959	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	8612169	2L_8612169_SNP [dm3] 2L_8612169_SNP [dm6]	G	A	4.849e^-4	1	INTRON Sema-1a
2L	11421970	2L_11421970_DEL [dm3] 2L_11421970_DEL [dm6]	ATTTATAGCA	A	4.853e^-4	1	INTERGENIC
X	16116632	X_16116632_SNP [dm3] X_16222599_SNP [dm6]	A	T	4.857e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	14662727	2R_14662727_SNP [dm3] 2R_18775222_SNP [dm6]	A	C	4.860e^-4	1	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6994735	2R_6994735_DEL [dm3] 2R_11107230_DEL [dm6]	ATA	A	4.864e^-4	1	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14600451	2R_14600451_SNP [dm3] 2R_18712946_SNP [dm6]	G	T	4.866e^-4	1	DOWNSTREAM pncr016:2R INTERGENIC
3L	3526775	3L_3526775_SNP [dm3] 3L_3526775_SNP [dm6]	C	T	4.866e^-4	1	INTRON Eip63E
3L	11671148	3L_11671148_SNP [dm3] 3L_11678048_SNP [dm6]	T	C	4.870e^-4	1	INTRON CG32085
3L	2001853	3L_2001853_SNP [dm3] 3L_2001853_SNP [dm6]	C	T	4.871e^-4	1	INTERGENIC
3L	8076377	3L_8076377_SNP [dm3] 3L_8083277_SNP [dm6]	T	A	4.871e^-4	1	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
2R	18041376	2R_18041376_MNP [dm3] 2R_22153871_MNP [dm6]	AGT	TTA	4.894e^-4	1	INTRON a
3L	11670166	3L_11670166_SNP [dm3] 3L_11677066_SNP [dm6]	A	T	4.897e^-4	1	INTRON CG32085
3L	7796457	3L_7796457_SNP [dm3] 3L_7803357_SNP [dm6]	G	T	4.905e^-4	1	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22600413	3L_22600413_DEL [dm3] 3L_22607313_DEL [dm6]	CC	C	4.908e^-4	1	DOWNSTREAM CG6914 INTRON CG14459
X	19108863	X_19108863_DEL [dm3] X_19214830_DEL [dm6]	CACGCTCC	C	4.912e^-4	1	UTR_3_PRIME Mur18B UPSTREAM Muc18B	TF binding site mE1_TFBS_chinmo
3R	15977602	3R_15977602_SNP [dm3] 3R_20151880_SNP [dm6]	G	C	4.921e^-4	1	INTERGENIC
3R	22194457	3R_22194457_SNP [dm3] 3R_26368735_SNP [dm6]	C	A	4.923e^-4	1	INTERGENIC
2R	4629412	2R_4629412_SNP [dm3] 2R_8741907_SNP [dm6]	A	G	4.928e^-4	1	INTRON CG8740
3L	8618861	3L_8618861_SNP [dm3] 3L_8625761_SNP [dm6]	A	T	4.933e^-4	1	UPSTREAM Zasp66 INTRON Zasp66
2R	10030838	2R_10030838_SNP [dm3] 2R_14143333_SNP [dm6]	G	A	4.947e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16205267	2L_16205267_INS [dm3] 2L_16205267_INS [dm6]	T	TA	4.958e^-4	1	INTERGENIC
2L	16205272	2L_16205272_DEL [dm3] 2L_16205272_DEL [dm6]	AG	A	4.958e^-4	1	INTERGENIC
3L	21283234	3L_21283234_SNP [dm3] 3L_21290134_SNP [dm6]	G	A	4.968e^-4	1	UTR_3_PRIME pzg DOWNSTREAM pzg
2L	13134402	2L_13134402_SNP [dm3] 2L_13134402_SNP [dm6]	A	C	4.970e^-4	1	SYNONYMOUS_CODING CG5122
2R	19039205	2R_19039205_SNP [dm3] 2R_23151682_SNP [dm6]	G	A	4.973e^-4	1	INTERGENIC
2L	13825811	2L_13825811_SNP [dm3] 2L_13825811_SNP [dm6]	A	C	4.992e^-4	1	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18041305	2R_18041305_DEL [dm3] 2R_22153800_DEL [dm6]	AATAT	A	4.998e^-4	1	INTRON a
2L	4576330	2L_4576330_SNP [dm3] 2L_4576330_SNP [dm6]	C	T	5.006e^-4	1	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4477270	3L_4477270_SNP [dm3] 3L_4477270_SNP [dm6]	T	G	5.013e^-4	1	INTERGENIC
2R	14886492	2R_14886492_SNP [dm3] 2R_18998987_SNP [dm6]	A	G	5.022e^-4	1	INTRON tn
2L	1531952	2L_1531952_SNP [dm3] 2L_1531952_SNP [dm6]	A	T	5.027e^-4	1	INTERGENIC
2L	14014894	2L_14014894_SNP [dm3] 2L_14014894_SNP [dm6]	C	G	5.033e^-4	1	INTRON bgm
3R	21786691	3R_21786691_SNP [dm3] 3R_25960969_SNP [dm6]	G	C	5.042e^-4	1	NON_SYNONYMOUS_CODING CG14540
3L	2504082	3L_2504082_SNP [dm3] 3L_2504082_SNP [dm6]	T	G	5.045e^-4	1	UPSTREAM CG16758 EXON CR45425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17451633	X_17451633_SNP [dm3] X_17557600_SNP [dm6]	T	G	5.052e^-4	1	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	13825745	2L_13825745_SNP [dm3] 2L_13825745_SNP [dm6]	G	A	5.053e^-4	1	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4602948	2R_4602948_DEL [dm3] 2R_8715443_DEL [dm6]	CTCATAATTTTTAAAAC...	C	5.055e^-4	1	DOWNSTREAM PGRP-SC1b INTERGENIC
2R	6862651	2R_6862651_DEL [dm3] 2R_10975146_DEL [dm6]	TTT	T	5.068e^-4	1	INTERGENIC
3R	10339030	3R_10339030_SNP [dm3] 3R_14513308_SNP [dm6]	C	G	5.078e^-4	1	NON_SYNONYMOUS_CODING CG8461 DOWNSTREAM mRpL11 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21253436	3L_21253436_SNP [dm3] 3L_21260336_SNP [dm6]	G	A	5.079e^-4	1	INTRON Eip78C
2R	16166229	2R_16166229_SNP [dm3] 2R_20278724_SNP [dm6]	A	C	5.079e^-4	1	SYNONYMOUS_CODING CG9143 DOWNSTREAM CG9090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5958156	2R_5958156_SNP [dm3] 2R_10070651_SNP [dm6]	T	C	5.080e^-4	1	SYNONYMOUS_CODING CG12920 DOWNSTREAM CG1371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17451784	X_17451784_SNP [dm3] X_17557751_SNP [dm6]	G	A	5.082e^-4	1	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	21289537	3L_21289537_SNP [dm3] 3L_21296437_SNP [dm6]	A	C	5.082e^-4	1	UTR_3_PRIME Cpr78Cb DOWNSTREAM Edg78E	TF binding site mE1_TFBS_sens
3L	2995159	3L_2995159_SNP [dm3] 3L_2995159_SNP [dm6]	G	C	5.084e^-4	1	UPSTREAM CG2113 INTERGENIC
X	16273510	X_16273510_SNP [dm3] X_16379477_SNP [dm6]	T	A	5.118e^-4	1	INTRON Fur2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2825990	3L_2825990_DEL [dm3] 3L_2825990_DEL [dm6]	CC	A	5.136e^-4	1	INTRON CG43444
2R	15727008	2R_15727008_SNP [dm3] 2R_19839503_SNP [dm6]	G	A	5.139e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11785650	2L_11785650_SNP [dm3] 2L_11785650_SNP [dm6]	G	A	5.145e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4432951	2L_4432951_SNP [dm3] 2L_4432951_SNP [dm6]	T	G	5.145e^-4	1	UPSTREAM CG34177 & 1 other INTRON CG15431
2R	18040045	2R_18040045_SNP [dm3] 2R_22152540_SNP [dm6]	T	C	5.154e^-4	1	INTRON a
2R	2035156	2R_2035156_SNP [dm3] 2R_6147651_SNP [dm6]	A	G	5.154e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7551654	X_7551654_DEL [dm3] X_7657621_DEL [dm6]	TGAAATCG	T	5.157e^-4	1	INTRON ct
3R	27082731	3R_27082731_SNP [dm3] 3R_31257009_SNP [dm6]	G	A	5.161e^-4	1	UPSTREAM CG3669 DOWNSTREAM spn-F INTERGENIC
3L	21246265	3L_21246265_SNP [dm3] 3L_21253165_SNP [dm6]	C	A	5.175e^-4	1	INTRON Eip78C
3L	2979683	3L_2979683_INS [dm3] 3L_2979683_INS [dm6]	T	TACCTCATGTACT...	5.177e^-4	1	INTERGENIC
2R	13185513	2R_13185513_SNP [dm3] 2R_17298008_SNP [dm6]	G	C	5.189e^-4	1	INTRON mbl
3R	16254248	3R_16254248_SNP [dm3] 3R_20428526_SNP [dm6]	A	T	5.206e^-4	1	INTRON Gfrl
3R	13650102	3R_13650102_SNP [dm3] 3R_17824380_SNP [dm6]	A	T	5.212e^-4	1	INTRON tinc
3L	3090763	3L_3090763_SNP [dm3] 3L_3090763_SNP [dm6]	T	C	5.213e^-4	1	UPSTREAM snRNA:U5:63BC DOWNSTREAM Cht7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5827446	2L_5827446_SNP [dm3] 2L_5827446_SNP [dm6]	C	T	5.216e^-4	1	INTRON TrissinR
3L	17184045	3L_17184045_SNP [dm3] 3L_17190945_SNP [dm6]	T	C	5.218e^-4	1	INTRON Rbp6
2L	3321375	2L_3321375_SNP [dm3] 2L_3321375_SNP [dm6]	C	A	5.219e^-4	1	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19975285	2R_19975285_SNP [dm3] 2R_24087762_SNP [dm6]	C	T	5.224e^-4	1	INTRON snama
2L	4552533	2L_4552533_SNP [dm3] 2L_4552533_SNP [dm6]	G	A	5.230e^-4	1	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5359399	3R_5359399_SNP [dm3] 3R_9533677_SNP [dm6]	C	T	5.244e^-4	1	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	8142061	2L_8142061_SNP [dm3] 2L_8142061_SNP [dm6]	T	C	5.245e^-4	1	UPSTREAM mir-4984 INTRON CG8552
2R	6350215	2R_6350215_SNP [dm3] 2R_10462710_SNP [dm6]	A	T	5.246e^-4	1	UTR_3_PRIME Galphao DOWNSTREAM Galphao	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	23005802	3L_23005802_DEL [dm3] 3L_23012702_DEL [dm6]	AACA	A	5.247e^-4	1	INTRON nrm
2L	8466533	2L_8466533_SNP [dm3] 2L_8466533_SNP [dm6]	C	A	5.249e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
3R	16997659	3R_16997659_SNP [dm3] 3R_21171937_SNP [dm6]	C	T	5.255e^-4	1	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2R	7003788	2R_7003788_DEL [dm3] 2R_11116283_DEL [dm6]	TATGCGTGTGTGTGT...	T	5.259e^-4	1	UTR_5_PRIME luna DOWNSTREAM Cyp12d1-p	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8176486	2R_8176486_SNP [dm3] 2R_12288981_SNP [dm6]	G	A	5.264e^-4	1	INTRON CG42700
3R	23563953	3R_23563953_DEL [dm3] 3R_27738231_DEL [dm6]	CCATC	C	5.278e^-4	1	INTRON Ets98B	TF binding site mE1_TFBS_HSA
X	10812745	X_10812745_SNP [dm3] X_10918712_SNP [dm6]	T	G	5.279e^-4	1	INTRON CG43901
2L	12748742	2L_12748742_SNP [dm3] 2L_12748742_SNP [dm6]	A	T	5.293e^-4	1	INTERGENIC
2R	16678240	2R_16678240_SNP [dm3] 2R_20790735_SNP [dm6]	C	T	5.298e^-4	1	SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
3L	15233939	3L_15233939_SNP [dm3] 3L_15240839_SNP [dm6]	T	C	5.303e^-4	1	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7872733	2L_7872733_SNP [dm3] 2L_7872733_SNP [dm6]	A	G	5.325e^-4	1	UPSTREAM tRNA:G3:28D & 1 other DOWNSTREAM spz3 INTERGENIC
3R	6032970	3R_6032970_SNP [dm3] 3R_10207248_SNP [dm6]	C	T	5.327e^-4	1	INTRON Syn & 1 other
2R	11383738	2R_11383738_SNP [dm3] 2R_15496233_SNP [dm6]	C	A	5.334e^-4	1	INTRON CG12964
3L	4184304	3L_4184304_SNP [dm3] 3L_4184304_SNP [dm6]	G	A	5.339e^-4	1	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3076958	3L_3076958_SNP [dm3] 3L_3076958_SNP [dm6]	C	G	5.342e^-4	1	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	25736888	3R_25736888_SNP [dm3] 3R_29911166_SNP [dm6]	C	T	5.351e^-4	1	SYNONYMOUS_CODING CG31036	TF binding site mE1_TFBS_cad
3R	25087832	3R_25087832_SNP [dm3] 3R_29262110_SNP [dm6]	C	A	5.359e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	5.370e^-4	1	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11667352	2L_11667352_SNP [dm3] 2L_11667352_SNP [dm6]	G	C	5.372e^-4	1	INTERGENIC
2R	16166570	2R_16166570_SNP [dm3] 2R_20279065_SNP [dm6]	T	G	5.375e^-4	1	UPSTREAM CG9143 DOWNSTREAM CG9090 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12406319	2L_12406319_SNP [dm3] 2L_12406319_SNP [dm6]	A	G	5.399e^-4	1	DOWNSTREAM vir-1 INTRON vir-1
2L	12406334	2L_12406334_SNP [dm3] 2L_12406334_SNP [dm6]	C	T	5.399e^-4	1	DOWNSTREAM vir-1 INTRON vir-1
2L	17816223	2L_17816223_SNP [dm3] 2L_17816223_SNP [dm6]	C	A	5.411e^-4	1	INTRON CadN2
3L	14639961	3L_14639961_SNP [dm3] 3L_14646861_SNP [dm6]	A	G	5.429e^-4	1	INTRON dlp
3R	24096721	3R_24096721_SNP [dm3] 3R_28270999_SNP [dm6]	A	G	5.434e^-4	1	INTERGENIC
2L	14011364	2L_14011364_SNP [dm3] 2L_14011364_SNP [dm6]	C	T	5.439e^-4	1	UPSTREAM tRNA:Q:34E INTERGENIC
X	21088887	X_21088887_SNP [dm3] X_21217860_SNP [dm6]	T	A	5.449e^-4	1	UPSTREAM CG32523 INTRON CG32521
2R	9963009	2R_9963009_SNP [dm3] 2R_14075504_SNP [dm6]	T	C	5.450e^-4	1	INTRON Prosap
X	9681459	X_9681459_SNP [dm3] X_9787426_SNP [dm6]	C	T	5.454e^-4	1	UPSTREAM CG32698 INTRON CG32698
2R	10025076	2R_10025076_SNP [dm3] 2R_14137571_SNP [dm6]	G	C	5.464e^-4	1	INTRON Prosap
3R	22814460	3R_22814460_SNP [dm3] 3R_26988738_SNP [dm6]	A	T	5.475e^-4	1	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3R	27092731	3R_27092731_SNP [dm3] 3R_31267009_SNP [dm6]	A	T	5.477e^-4	1	INTRON ppk24
X	17451801	X_17451801_SNP [dm3] X_17557768_SNP [dm6]	T	A	5.483e^-4	1	INTRON CG43658	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	12108177	3L_12108177_SNP [dm3] 3L_12115077_SNP [dm6]	A	G	5.517e^-4	1	INTERGENIC
2R	18454998	2R_18454998_SNP [dm3] 2R_22567493_SNP [dm6]	C	A	5.523e^-4	1	INTRON dnr1	TF binding site mE1_TFBS_chinmo
2R	2402940	2R_2402940_SNP [dm3] 2R_6515435_SNP [dm6]	A	G	5.547e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10853141	X_10853141_SNP [dm3] X_10959108_SNP [dm6]	T	C	5.576e^-4	1	INTRON Myo10A
X	19127186	X_19127186_SNP [dm3] X_19233153_SNP [dm6]	C	G	5.585e^-4	1	NON_SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11815759	3L_11815759_SNP [dm3] 3L_11822659_SNP [dm6]	T	G	5.588e^-4	1	UPSTREAM RpL10Ab & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4139001	2L_4139001_SNP [dm3] 2L_4139001_SNP [dm6]	T	C	5.600e^-4	1	INTERGENIC
2L	13464086	2L_13464086_SNP [dm3] 2L_13464086_SNP [dm6]	A	G	5.603e^-4	1	INTRON CG42784
2R	17794627	2R_17794627_SNP [dm3] 2R_21907122_SNP [dm6]	C	T	5.605e^-4	1	INTRON Fili
X	19126514	X_19126514_SNP [dm3] X_19232481_SNP [dm6]	C	T	5.616e^-4	1	SYNONYMOUS_CODING CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	11037186	2R_11037186_SNP [dm3] 2R_15149681_SNP [dm6]	T	C	5.623e^-4	1	UTR_3_PRIME CG7544
3R	22722099	3R_22722099_SNP [dm3] 3R_26896377_SNP [dm6]	G	T	5.627e^-4	1	INTRON T48	regulatory region REDfly_CRMs
2R	18000927	2R_18000927_SNP [dm3] 2R_22113422_SNP [dm6]	C	G	5.629e^-4	1	UPSTREAM CG30280 & 1 other INTRON Vrp1
3L	1913735	3L_1913735_SNP [dm3] 3L_1913735_SNP [dm6]	A	G	5.636e^-4	1	INTERGENIC
2R	10024871	2R_10024871_SNP [dm3] 2R_14137366_SNP [dm6]	T	C	5.645e^-4	1	INTRON Prosap
3R	19446552	3R_19446552_SNP [dm3] 3R_23620830_SNP [dm6]	C	T	5.646e^-4	1	INTRON CG31145
2L	3746130	2L_3746130_SNP [dm3] 2L_3746130_SNP [dm6]	A	G	5.653e^-4	1	INTRON CG10019	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2343159	2L_2343159_SNP [dm3] 2L_2343159_SNP [dm6]	G	C	5.654e^-4	1	INTRON CG9967 & 1 other
3R	25639357	3R_25639357_SNP [dm3] 3R_29813635_SNP [dm6]	C	T	5.654e^-4	1	NON_SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19699202	2L_19699202_SNP [dm3] 2L_19699202_SNP [dm6]	C	T	5.662e^-4	1	DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da
3R	10948522	3R_10948522_INS [dm3] 3R_15122800_INS [dm6]	A	ATC	5.663e^-4	1	INTRON CG42788
3L	3510364	3L_3510364_SNP [dm3] 3L_3510364_SNP [dm6]	T	G	5.671e^-4	1	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
2R	2444584	2R_2444584_SNP [dm3] 2R_6557079_SNP [dm6]	T	G	5.685e^-4	1	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8976023	X_8976023_SNP [dm3] X_9081990_SNP [dm6]	C	T	5.696e^-4	1	NON_SYNONYMOUS_CODING HP1b UPSTREAM CG7246 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10813652	2R_10813652_SNP [dm3] 2R_14926147_SNP [dm6]	A	G	5.697e^-4	1	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25789395	3R_25789395_SNP [dm3] 3R_29963673_SNP [dm6]	C	T	5.702e^-4	1	INTRON TkR99D
3R	21073346	3R_21073346_SNP [dm3] 3R_25247624_SNP [dm6]	C	G	5.709e^-4	1	UPSTREAM Nup37 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15263509	X_15263509_SNP [dm3] X_15369476_SNP [dm6]	A	G	5.710e^-4	1	INTRON acj6
2R	6599000	2R_6599000_SNP [dm3] 2R_10711495_SNP [dm6]	G	A	5.724e^-4	1	SYNONYMOUS_CODING stan
2R	6339400	2R_6339400_SNP [dm3] 2R_10451895_SNP [dm6]	A	G	5.756e^-4	1	INTRON Galphao & 1 other
2L	15922188	2L_15922188_SNP [dm3] 2L_15922188_SNP [dm6]	A	G	5.758e^-4	1	INTRON beat-Ib
3R	22499650	3R_22499650_SNP [dm3] 3R_26673928_SNP [dm6]	A	G	5.759e^-4	1	INTRON beat-VII
2L	9132499	2L_9132499_SNP [dm3] 2L_9132499_SNP [dm6]	C	G	5.763e^-4	1	INTRON CG32982
2L	13598724	2L_13598724_SNP [dm3] 2L_13598724_SNP [dm6]	C	T	5.764e^-4	1	INTRON kuz
2L	20292122	2L_20292122_SNP [dm3] 2L_20292122_SNP [dm6]	A	T	5.766e^-4	1	INTERGENIC
2R	2038663	2R_2038663_SNP [dm3] 2R_6151158_SNP [dm6]	G	A	5.768e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	15014670	2R_15014670_SNP [dm3] 2R_19127165_SNP [dm6]	A	T	5.769e^-4	1	UPSTREAM CG15117 INTRON CG15117
2R	2448283	2R_2448283_SNP [dm3] 2R_6560778_SNP [dm6]	C	T	5.774e^-4	1	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	13464243	2L_13464243_SNP [dm3] 2L_13464243_SNP [dm6]	T	A	5.780e^-4	1	INTRON CG42784
2L	11008882	2L_11008882_DEL [dm3] 2L_11008882_DEL [dm6]	AT	A	5.781e^-4	1	DOWNSTREAM Art8 INTRON Nup154
3R	26302013	3R_26302013_SNP [dm3] 3R_30476291_SNP [dm6]	A	G	5.786e^-4	1	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24200226	3R_24200226_SNP [dm3] 3R_28374504_SNP [dm6]	T	A	5.788e^-4	1	INTERGENIC
3L	6446823	3L_6446823_SNP [dm3] 3L_6453723_SNP [dm6]	G	A	5.790e^-4	1	INTRON CG42747
2R	14886508	2R_14886508_SNP [dm3] 2R_18999003_SNP [dm6]	G	A	5.796e^-4	1	INTRON tn
2R	20059984	2R_20059984_SNP [dm3] 2R_24172461_SNP [dm6]	C	T	5.802e^-4	1	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_chinmo
2L	4493495	2L_4493495_SNP [dm3] 2L_4493495_SNP [dm6]	G	A	5.810e^-4	1	NON_SYNONYMOUS_CODING dp INTRON dp
2L	13509800	2L_13509800_SNP [dm3] 2L_13509800_SNP [dm6]	G	T	5.819e^-4	1	SPLICE_SITE_REGION B4 INTRON B4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9476984	3L_9476984_SNP [dm3] 3L_9483884_SNP [dm6]	G	A	5.819e^-4	1	NON_SYNONYMOUS_CODING Jarid2
3L	1523403	3L_1523403_INS [dm3] 3L_1523403_INS [dm6]	G	ATA	5.845e^-4	1	DOWNSTREAM CG12090 & 1 other INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.912e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1485 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	19842544	2R_19842544_SNP [dm3] 2R_23955021_SNP [dm6]	C	G	6.460e^-8	0.121	NON_SYNONYMOUS_CODING thoc5 UPSTREAM CG3803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8994503	2R_8994503_SNP [dm3] 2R_13106998_SNP [dm6]	T	A	1.412e^-7	0.132	INTERGENIC
2L	1698874	2L_1698874_SNP [dm3] 2L_1698874_SNP [dm6]	T	A	2.298e^-7	0.144	UTR_3_PRIME chinmo DOWNSTREAM chinmo
2R	19843340	2R_19843340_SNP [dm3] 2R_23955817_SNP [dm6]	T	A	9.760e^-7	0.402	NON_SYNONYMOUS_CODING thoc5 DOWNSTREAM CG16787	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19841650	2R_19841650_SNP [dm3] 2R_23954127_SNP [dm6]	C	T	1.432e^-6	0.402	UTR_5_PRIME thoc5 UPSTREAM CG3803	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8994475	2R_8994475_SNP [dm3] 2R_13106970_SNP [dm6]	A	C	1.528e^-6	0.402	INTERGENIC
2R	8994500	2R_8994500_SNP [dm3] 2R_13106995_SNP [dm6]	T	C	1.560e^-6	0.402	INTERGENIC
2L	14427007	2L_14427007_SNP [dm3] 2L_14427007_SNP [dm6]	T	A	1.714e^-6	0.402	INTERGENIC
3R	4586891	3R_4586891_INS [dm3] 3R_8761169_INS [dm6]	C	CACC	2.052e^-6	0.428	INTRON CG11768 & 1 other
3R	17685853	3R_17685853_INS [dm3] 3R_21860131_INS [dm6]	T	TT	3.581e^-6	0.5	DOWNSTREAM CR45644 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	19842724	2R_19842724_SNP [dm3] 2R_23955201_SNP [dm6]	T	G	4.251e^-6	0.5	NON_SYNONYMOUS_CODING thoc5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19841373	2R_19841373_SNP [dm3] 2R_23953850_SNP [dm6]	G	A	4.261e^-6	0.5	SYNONYMOUS_CODING CG3803 UPSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8772940	2R_8772940_SNP [dm3] 2R_12885435_SNP [dm6]	G	C	4.441e^-6	0.5	INTRON vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	24190676	3R_24190676_SNP [dm3] 3R_28364954_SNP [dm6]	G	A	4.530e^-6	0.5	INTERGENIC
X	3700322	X_3700322_SNP [dm3] X_3806289_SNP [dm6]	A	T	4.531e^-6	0.5	INTRON fd3F
X	3700364	X_3700364_SNP [dm3] X_3806331_SNP [dm6]	G	C	4.531e^-6	0.5	INTRON fd3F
X	3700368	X_3700368_SNP [dm3] X_3806335_SNP [dm6]	C	A	4.531e^-6	0.5	INTRON fd3F
2R	8994442	2R_8994442_SNP [dm3] 2R_13106937_SNP [dm6]	A	G	5.688e^-6	0.593	INTERGENIC
2L	3327153	2L_3327153_SNP [dm3] 2L_3327153_SNP [dm6]	A	G	6.982e^-6	0.689	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	3327164	2L_3327164_SNP [dm3] 2L_3327164_SNP [dm6]	T	C	7.538e^-6	0.7	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	3325795	2L_3325795_SNP [dm3] 2L_3325795_SNP [dm6]	A	G	7.833e^-6	0.7	INTRON CG33281
3L	1944337	3L_1944337_SNP [dm3] 3L_1944337_SNP [dm6]	A	G	9.305e^-6	0.79	SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad
2L	3248124	2L_3248124_SNP [dm3] 2L_3248124_SNP [dm6]	G	A	9.909e^-6	0.79	INTERGENIC
2L	13392748	2L_13392748_SNP [dm3] 2L_13392748_SNP [dm6]	G	C	1.010e^-5	0.79	DOWNSTREAM RpL24 INTRON CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6716926	X_6716926_SNP [dm3] X_6822893_SNP [dm6]	G	T	1.342e^-5	0.998	UPSTREAM Atx-1 DOWNSTREAM CG4542 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19842637	2R_19842637_SNP [dm3] 2R_23955114_SNP [dm6]	C	A	1.389e^-5	0.998	INTRON thoc5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3248118	2L_3248118_DEL [dm3] 2L_3248118_DEL [dm6]	TAT	C	1.499e^-5	0.998	INTERGENIC
2R	19842067	2R_19842067_SNP [dm3] 2R_23954544_SNP [dm6]	A	G	1.585e^-5	0.998	SYNONYMOUS_CODING thoc5 UPSTREAM CG3803	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13542556	2R_13542556_SNP [dm3] 2R_17655051_SNP [dm6]	T	C	1.632e^-5	0.998	INTRON CCHa1-R
2R	8768679	2R_8768679_SNP [dm3] 2R_12881174_SNP [dm6]	A	C	1.725e^-5	0.998	SYNONYMOUS_CODING Aats-asp UPSTREAM Nmda1 DOWNSTREAM CR45141	TF binding site BDTNP1_TFBS_dl
3L	1944336	3L_1944336_SNP [dm3] 3L_1944336_SNP [dm6]	C	T	1.738e^-5	0.998	NON_SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad
2R	8994527	2R_8994527_SNP [dm3] 2R_13107022_SNP [dm6]	A	G	1.740e^-5	0.998	INTERGENIC
2L	13237659	2L_13237659_SNP [dm3] 2L_13237659_SNP [dm6]	T	G	1.755e^-5	0.998	INTRON CG5867
2R	16327017	2R_16327017_SNP [dm3] 2R_20439512_SNP [dm6]	G	T	1.809e^-5	0.998	INTRON CG12484
2R	8772921	2R_8772921_SNP [dm3] 2R_12885416_SNP [dm6]	A	T	1.863e^-5	0.999	INTRON vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	8771052	2R_8771052_SNP [dm3] 2R_12883547_SNP [dm6]	C	T	1.955e^-5	1	UPSTREAM CR45141 DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1946324	3L_1946324_SNP [dm3] 3L_1946324_SNP [dm6]	G	A	2.232e^-5	1	SYNONYMOUS_CODING mu2
3R	8797089	3R_8797089_DEL [dm3] 3R_12971367_DEL [dm6]	GCAACT	G	2.245e^-5	1	INTRON CG7381
2L	3327094	2L_3327094_SNP [dm3] 2L_3327094_SNP [dm6]	T	A	2.250e^-5	1	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3L	1944330	3L_1944330_SNP [dm3] 3L_1944330_SNP [dm6]	G	C	2.368e^-5	1	NON_SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad
2R	8994548	2R_8994548_SNP [dm3] 2R_13107043_SNP [dm6]	C	T	2.489e^-5	1	INTERGENIC
3R	6492186	3R_6492186_SNP [dm3] 3R_10666464_SNP [dm6]	G	A	2.569e^-5	1	INTERGENIC
2L	13237776	2L_13237776_SNP [dm3] 2L_13237776_SNP [dm6]	A	G	2.579e^-5	1	INTRON CG5867
2L	16571745	2L_16571745_SNP [dm3] 2L_16571745_SNP [dm6]	T	C	2.632e^-5	1	INTRON CG42389
2L	3248886	2L_3248886_SNP [dm3] 2L_3248886_SNP [dm6]	A	T	2.683e^-5	1	INTERGENIC
X	2259029	X_2259029_SNP [dm3] X_2364996_SNP [dm6]	G	A	2.803e^-5	1	INTRON ptr	TF binding site mE1_TFBS_HSA
2R	17003654	2R_17003654_SNP [dm3] 2R_21116149_SNP [dm6]	A	G	2.893e^-5	1	INTRON ktub
2L	1517043	2L_1517043_SNP [dm3] 2L_1517043_SNP [dm6]	C	T	2.990e^-5	1	SYNONYMOUS_CODING CG18132 DOWNSTREAM halo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	13697533	X_13697533_SNP [dm3] X_13803500_SNP [dm6]	T	C	3.147e^-5	1	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med
2R	13585901	2R_13585901_SNP [dm3] 2R_17698396_SNP [dm6]	C	A	3.152e^-5	1	UPSTREAM Uhg1 & 2 others EXON CR45146	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8994835	2R_8994835_SNP [dm3] 2R_13107330_SNP [dm6]	A	T	3.187e^-5	1	INTERGENIC
3R	13004800	3R_13004800_SNP [dm3] 3R_17179078_SNP [dm6]	C	A	3.207e^-5	1	INTRON Mur89F
2R	8772877	2R_8772877_SNP [dm3] 2R_12885372_SNP [dm6]	T	C	3.295e^-5	1	INTRON vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	13004801	3R_13004801_SNP [dm3] 3R_17179079_SNP [dm6]	C	A	3.407e^-5	1	INTRON Mur89F
2L	13392923	2L_13392923_SNP [dm3] 2L_13392923_SNP [dm6]	T	C	3.487e^-5	1	NON_SYNONYMOUS_CODING CG7099 DOWNSTREAM RpL24	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3249108	2L_3249108_SNP [dm3] 2L_3249108_SNP [dm6]	C	T	3.670e^-5	1	INTERGENIC
2R	8772890	2R_8772890_SNP [dm3] 2R_12885385_SNP [dm6]	C	A	3.754e^-5	1	INTRON vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	3164583	2L_3164583_SNP [dm3] 2L_3164583_SNP [dm6]	G	A	3.918e^-5	1	INTRON Hydr2
2L	2811892	2L_2811892_SNP [dm3] 2L_2811892_SNP [dm6]	T	C	3.954e^-5	1	UTR_3_PRIME daw UPSTREAM CG2964	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9018005	2R_9018005_SNP [dm3] 2R_13130500_SNP [dm6]	G	A	3.957e^-5	1	SYNONYMOUS_CODING CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7441598	2L_7441598_SNP [dm3] 2L_7441598_SNP [dm6]	A	T	4.049e^-5	1	UTR_5_PRIME CG5973 INTRON CG5973
2L	16335235	2L_16335235_SNP [dm3] 2L_16335235_SNP [dm6]	C	A	4.081e^-5	1	NON_SYNONYMOUS_CODING CG31817
2L	7441597	2L_7441597_SNP [dm3] 2L_7441597_SNP [dm6]	A	G	4.206e^-5	1	UTR_5_PRIME CG5973 INTRON CG5973
3R	6492099	3R_6492099_INS [dm3] 3R_10666377_INS [dm6]	A	AGGGTATAA	4.214e^-5	1	INTERGENIC
2R	10210498	2R_10210498_SNP [dm3] 2R_14322993_SNP [dm6]	T	G	4.353e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
2L	16339757	2L_16339757_SNP [dm3] 2L_16339757_SNP [dm6]	A	C	4.428e^-5	1	SYNONYMOUS_CODING CG42266 DOWNSTREAM CG44405
2R	10210502	2R_10210502_SNP [dm3] 2R_14322997_SNP [dm6]	C	T	4.457e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
3L	7455308	3L_7455308_SNP [dm3] 3L_7462208_SNP [dm6]	G	A	4.479e^-5	1	INTERGENIC
2R	843485	2R_843485_SNP [dm3] 2R_4955980_SNP [dm6]	G	T	4.531e^-5	1	INTRON Ir41a	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	3248125	2L_3248125_SNP [dm3] 2L_3248125_SNP [dm6]	T	A	4.597e^-5	1	INTERGENIC
2R	19841531	2R_19841531_SNP [dm3] 2R_23954008_SNP [dm6]	C	G	4.709e^-5	1	UTR_5_PRIME CG3803 UPSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12091176	2L_12091176_DEL [dm3] 2L_12091176_DEL [dm6]	GG	G	4.764e^-5	1	UPSTREAM Pex19 DOWNSTREAM CR44594 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	1944355	3L_1944355_SNP [dm3] 3L_1944355_SNP [dm6]	G	A	4.776e^-5	1	SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad
X	19360244	X_19360244_SNP [dm3] X_19466211_SNP [dm6]	C	T	4.857e^-5	1	SYNONYMOUS_CODING kek5	TF binding site mE1_TFBS_cad
3R	10784914	3R_10784914_SNP [dm3] 3R_14959192_SNP [dm6]	G	T	4.861e^-5	1	INTERGENIC
2R	3786153	2R_3786153_SNP [dm3] 2R_7898648_SNP [dm6]	A	T	4.938e^-5	1	INTRON CG30377	TF binding site mE1_TFBS_cad
2R	8768447	2R_8768447_SNP [dm3] 2R_12880942_SNP [dm6]	G	T	5.056e^-5	1	SPLICE_SITE_REGION Aats-asp UPSTREAM Nmda1 DOWNSTREAM CR45141 INTRON Aats-asp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3248938	2L_3248938_SNP [dm3] 2L_3248938_SNP [dm6]	T	C	5.090e^-5	1	INTERGENIC
2R	10210403	2R_10210403_SNP [dm3] 2R_14322898_SNP [dm6]	C	A	5.156e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
X	4385029	X_4385029_SNP [dm3] X_4490996_SNP [dm6]	G	A	5.194e^-5	1	INTRON CR32773
2L	3260453	2L_3260453_SNP [dm3] 2L_3260453_SNP [dm6]	A	G	5.205e^-5	1	DOWNSTREAM CR45337 INTERGENIC
3L	10541740	3L_10541740_SNP [dm3] 3L_10548640_SNP [dm6]	G	C	5.305e^-5	1	INTRON A2bp1
2R	10210412	2R_10210412_SNP [dm3] 2R_14322907_SNP [dm6]	T	A	5.340e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
2L	3327223	2L_3327223_SNP [dm3] 2L_3327223_SNP [dm6]	A	G	5.436e^-5	1	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2L	12091100	2L_12091100_SNP [dm3] 2L_12091100_SNP [dm6]	G	A	5.499e^-5	1	UPSTREAM Pex19 DOWNSTREAM CR44594 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	23416309	3R_23416309_SNP [dm3] 3R_27590587_SNP [dm6]	C	T	5.632e^-5	1	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22527085	3R_22527085_SNP [dm3] 3R_26701363_SNP [dm6]	A	T	5.706e^-5	1	INTRON amon
2L	4856393	2L_4856393_SNP [dm3] 2L_4856393_SNP [dm6]	T	C	5.744e^-5	1	INTRON pog
3R	6547469	3R_6547469_SNP [dm3] 3R_10721747_SNP [dm6]	A	G	5.908e^-5	1	INTERGENIC
2L	16501212	2L_16501212_SNP [dm3] 2L_16501212_SNP [dm6]	A	C	6.044e^-5	1	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15657290	3L_15657290_SNP [dm3] 3L_15664190_SNP [dm6]	T	G	6.135e^-5	1	INTERGENIC
2L	5645385	2L_5645385_SNP [dm3] 2L_5645385_SNP [dm6]	A	G	6.289e^-5	1	INTRON CG31646
3L	3808501	3L_3808501_SNP [dm3] 3L_3808501_SNP [dm6]	C	T	6.341e^-5	1	SYNONYMOUS_CODING IntS10 DOWNSTREAM CG32262
2R	10206125	2R_10206125_SNP [dm3] 2R_14318620_SNP [dm6]	A	T	6.430e^-5	1	INTRON Shroom
2R	18257790	2R_18257790_SNP [dm3] 2R_22370285_SNP [dm6]	G	T	6.463e^-5	1	INTRON Liprin-gamma
3R	6481093	3R_6481093_SNP [dm3] 3R_10655371_SNP [dm6]	C	G	6.484e^-5	1	INTERGENIC
2R	9230673	2R_9230673_SNP [dm3] 2R_13343168_SNP [dm6]	G	T	6.525e^-5	1	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	835081	2R_835081_DEL [dm3] 2R_4947576_DEL [dm6]	ATTAAACG	A	6.642e^-5	1	INTRON Ir41a
3R	22435005	3R_22435005_SNP [dm3] 3R_26609283_SNP [dm6]	T	A	6.649e^-5	1	DOWNSTREAM CR44951 INTERGENIC
2R	10442834	2R_10442834_SNP [dm3] 2R_14555329_SNP [dm6]	C	T	6.738e^-5	1	INTRON ttv
2L	16339491	2L_16339491_SNP [dm3] 2L_16339491_SNP [dm6]	T	A	7.003e^-5	1	DOWNSTREAM CG44405 INTRON CG42266
2L	3325463	2L_3325463_SNP [dm3] 2L_3325463_SNP [dm6]	C	A	7.186e^-5	1	SYNONYMOUS_CODING CG33281
2R	8994418	2R_8994418_SNP [dm3] 2R_13106913_SNP [dm6]	C	T	7.199e^-5	1	INTERGENIC
X	4862719	X_4862719_SNP [dm3] X_4968686_SNP [dm6]	T	C	7.347e^-5	1	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18032097	3L_18032097_SNP [dm3] 3L_18038997_SNP [dm6]	A	G	7.614e^-5	1	INTRON Eip75B
2R	10892958	2R_10892958_SNP [dm3] 2R_15005453_SNP [dm6]	G	T	7.614e^-5	1	INTERGENIC
X	13697515	X_13697515_SNP [dm3] X_13803482_SNP [dm6]	C	T	7.703e^-5	1	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med
2R	8771153	2R_8771153_SNP [dm3] 2R_12883648_SNP [dm6]	C	T	7.709e^-5	1	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12348580	2L_12348580_SNP [dm3] 2L_12348580_SNP [dm6]	T	C	7.779e^-5	1	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2L	3328647	2L_3328647_SNP [dm3] 2L_3328647_SNP [dm6]	C	A	7.793e^-5	1	NON_SYNONYMOUS_CODING CG33282
3L	2799956	3L_2799956_SNP [dm3] 3L_2799956_SNP [dm6]	C	T	7.847e^-5	1	INTRON CG43444	TF binding site mE1_TFBS_sbb
3R	15630112	3R_15630112_SNP [dm3] 3R_19804390_SNP [dm6]	G	A	7.908e^-5	1	INTRON bnl	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18981564	2R_18981564_SNP [dm3] 2R_23094041_SNP [dm6]	A	C	7.945e^-5	1	START_GAINED CG9876 UTR_5_PRIME CG9876	TF binding site BDTNP1_TFBS_twi
2L	13929002	2L_13929002_SNP [dm3] 2L_13929002_SNP [dm6]	G	T	8.179e^-5	1	INTRON Ance-3
2R	8194287	2R_8194287_SNP [dm3] 2R_12306782_SNP [dm6]	A	C	8.187e^-5	1	UPSTREAM SIP2 INTRON CG17739
2L	3284619	2L_3284619_SNP [dm3] 2L_3284619_SNP [dm6]	C	A	8.360e^-5	1	INTERGENIC
2R	12590839	2R_12590839_SNP [dm3] 2R_16703334_SNP [dm6]	C	T	8.523e^-5	1	INTRON CG30463
3R	20529257	3R_20529257_SNP [dm3] 3R_24703535_SNP [dm6]	G	A	8.550e^-5	1	INTRON slo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11817921	2R_11817921_SNP [dm3] 2R_15930416_SNP [dm6]	A	C	8.563e^-5	1	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	8404639	3R_8404639_INS [dm3] 3R_12578917_INS [dm6]	A	AA	8.606e^-5	1	INTRON Octbeta2R
3R	6215416	3R_6215416_DEL [dm3] 3R_10389694_DEL [dm6]	TT	T	8.722e^-5	1	INTRON cwo
2L	13286824	2L_13286824_SNP [dm3] 2L_13286824_SNP [dm6]	C	A	8.727e^-5	1	UTR_5_PRIME Uvrag UPSTREAM Drep-4 DOWNSTREAM CR44083 INTRON Uvrag	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8613044	3R_8613044_SNP [dm3] 3R_12787322_SNP [dm6]	G	C	8.960e^-5	1	INTERGENIC
3R	22527082	3R_22527082_SNP [dm3] 3R_26701360_SNP [dm6]	G	A	8.963e^-5	1	INTRON amon
2L	10036592	2L_10036592_SNP [dm3] 2L_10036592_SNP [dm6]	G	A	8.967e^-5	1	INTRON obst-B
3R	9634809	3R_9634809_SNP [dm3] 3R_13809087_SNP [dm6]	C	G	8.985e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7829514	2L_7829514_SNP [dm3] 2L_7829514_SNP [dm6]	G	A	9.134e^-5	1	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9827396	2L_9827396_SNP [dm3] 2L_9827396_SNP [dm6]	A	T	9.220e^-5	1	INTRON nAChRalpha6
2L	3331361	2L_3331361_SNP [dm3] 2L_3331361_SNP [dm6]	G	T	9.318e^-5	1	INTRON CG3285
X	17404716	X_17404716_INS [dm3] X_17510683_INS [dm6]	T	TAGTAGATATGT...	9.339e^-5	1	INTRON CG43658
2R	10210501	2R_10210501_SNP [dm3] 2R_14322996_SNP [dm6]	C	T	9.461e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
4	532414	4_532414_SNP [dm3] 4_511788_SNP [dm6]	G	A	9.462e^-5	1	INTRON zfh2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	438167	2L_438167_SNP [dm3] 2L_438167_SNP [dm6]	T	G	9.564e^-5	1	INTRON ex
2L	3260489	2L_3260489_SNP [dm3] 2L_3260489_SNP [dm6]	A	G	9.568e^-5	1	DOWNSTREAM CR45337 INTERGENIC
3L	18953285	3L_18953285_SNP [dm3] 3L_18960185_SNP [dm6]	T	A	9.619e^-5	1	INTERGENIC
2R	10210463	2R_10210463_SNP [dm3] 2R_14322958_SNP [dm6]	A	T	9.626e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
2R	10442812	2R_10442812_SNP [dm3] 2R_14555307_SNP [dm6]	G	T	9.808e^-5	1	UPSTREAM CG43919 INTRON ttv
2R	8772028	2R_8772028_SNP [dm3] 2R_12884523_SNP [dm6]	C	G	9.809e^-5	1	UPSTREAM vg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	838867	2R_838867_SNP [dm3] 2R_4951362_SNP [dm6]	G	A	9.859e^-5	1	INTRON Ir41a	transposable element FlyBase
2L	16339544	2L_16339544_SNP [dm3] 2L_16339544_SNP [dm6]	A	T	9.938e^-5	1	SPLICE_SITE_REGION CG42266 DOWNSTREAM CG44405 INTRON CG42266
2R	11821558	2R_11821558_SNP [dm3] 2R_15934053_SNP [dm6]	T	C	9.984e^-5	1	UPSTREAM CG8297 INTRON Iap2	TF binding site BDTNP1_TFBS_dl
3L	11033255	3L_11033255_SNP [dm3] 3L_11040155_SNP [dm6]	G	A	1.012e^-4	1	UPSTREAM CG43693 INTRON CG43693
2L	6076637	2L_6076637_SNP [dm3] 2L_6076637_SNP [dm6]	T	C	1.030e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12756575	2L_12756575_SNP [dm3] 2L_12756575_SNP [dm6]	G	T	1.030e^-4	1	INTERGENIC
3L	1677554	3L_1677554_SNP [dm3] 3L_1677554_SNP [dm6]	C	T	1.031e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo
2L	6077483	2L_6077483_SNP [dm3] 2L_6077483_SNP [dm6]	T	A	1.044e^-4	1	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14744699	2R_14744699_SNP [dm3] 2R_18857194_SNP [dm6]	T	G	1.052e^-4	1	INTRON Jheh2
2R	10210467	2R_10210467_SNP [dm3] 2R_14322962_SNP [dm6]	C	T	1.054e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
2R	8194278	2R_8194278_SNP [dm3] 2R_12306773_SNP [dm6]	C	T	1.057e^-4	1	UPSTREAM SIP2 INTRON CG17739
2R	11821609	2R_11821609_SNP [dm3] 2R_15934104_SNP [dm6]	C	T	1.062e^-4	1	UPSTREAM CG8297 INTRON Iap2	TF binding site BDTNP1_TFBS_dl
2L	3329670	2L_3329670_SNP [dm3] 2L_3329670_SNP [dm6]	A	C	1.071e^-4	1	UTR_3_PRIME CG33282
X	2441949	X_2441949_SNP [dm3] X_2547916_SNP [dm6]	T	A	1.082e^-4	1	INTERGENIC
2L	12478968	2L_12478968_SNP [dm3] 2L_12478968_SNP [dm6]	C	T	1.095e^-4	1	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4182993	3L_4182993_SNP [dm3] 3L_4182993_SNP [dm6]	A	G	1.115e^-4	1	INTRON CG18675 & 2 others
2R	8772708	2R_8772708_SNP [dm3] 2R_12885203_SNP [dm6]	A	T	1.117e^-4	1	START_GAINED vg UTR_5_PRIME vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	3248741	2L_3248741_SNP [dm3] 2L_3248741_SNP [dm6]	T	C	1.137e^-4	1	INTERGENIC
3L	2799807	3L_2799807_SNP [dm3] 3L_2799807_SNP [dm6]	A	T	1.138e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2L	3366194	2L_3366194_SNP [dm3] 2L_3366194_SNP [dm6]	T	G	1.139e^-4	1	UPSTREAM CG34394 INTRON CG34394
X	16147915	X_16147915_SNP [dm3] X_16253882_SNP [dm6]	G	C	1.143e^-4	1	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	758263	3L_758263_SNP [dm3] 3L_758263_SNP [dm6]	T	A	1.155e^-4	1	INTERGENIC
2R	13302171	2R_13302171_SNP [dm3] 2R_17414666_SNP [dm6]	G	A	1.156e^-4	1	SYNONYMOUS_CODING cnk DOWNSTREAM Prosalpha5	TF binding site mE1_TFBS_chinmo
3R	22073224	3R_22073224_SNP [dm3] 3R_26247502_SNP [dm6]	T	C	1.159e^-4	1	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16147917	X_16147917_INS [dm3] X_16253884_INS [dm6]	A	AA	1.161e^-4	1	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12253035	2R_12253035_SNP [dm3] 2R_16365530_SNP [dm6]	A	C	1.162e^-4	1	UTR_5_PRIME CG15711	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6029550	2L_6029550_SNP [dm3] 2L_6029550_SNP [dm6]	C	A	1.164e^-4	1	INTRON CG9109
3R	23366796	3R_23366796_SNP [dm3] 3R_27541074_SNP [dm6]	T	A	1.164e^-4	1	INTERGENIC
3R	23366829	3R_23366829_SNP [dm3] 3R_27541107_SNP [dm6]	C	T	1.164e^-4	1	INTERGENIC
3R	13101432	3R_13101432_SNP [dm3] 3R_17275710_SNP [dm6]	G	A	1.174e^-4	1	INTERGENIC
3L	15660667	3L_15660667_SNP [dm3] 3L_15667567_SNP [dm6]	G	A	1.180e^-4	1	INTERGENIC
2L	11970041	2L_11970041_SNP [dm3] 2L_11970041_SNP [dm6]	T	C	1.192e^-4	1	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8770843	2R_8770843_SNP [dm3] 2R_12883338_SNP [dm6]	T	A	1.194e^-4	1	UPSTREAM CR45141 DOWNSTREAM Aats-asp INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16929443	2R_16929443_SNP [dm3] 2R_21041938_SNP [dm6]	T	A	1.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13761327	3L_13761327_DEL [dm3] 3L_13768227_DEL [dm6]	GGGACAGGACACTGTGCTCT...	G	1.197e^-4	1	INTRON bru-3
2R	10210380	2R_10210380_SNP [dm3] 2R_14322875_SNP [dm6]	A	T	1.201e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
3R	20721360	3R_20721360_SNP [dm3] 3R_24895638_SNP [dm6]	G	T	1.209e^-4	1	INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	8767894	3R_8767894_SNP [dm3] 3R_12942172_SNP [dm6]	G	C	1.210e^-4	1	INTERGENIC
3R	6492095	3R_6492095_INS [dm3] 3R_10666373_INS [dm6]	T	AGGG	1.229e^-4	1	INTERGENIC
3L	4183043	3L_4183043_SNP [dm3] 3L_4183043_SNP [dm6]	C	A	1.230e^-4	1	INTRON CG18675 & 2 others
3R	22434912	3R_22434912_SNP [dm3] 3R_26609190_SNP [dm6]	T	A	1.243e^-4	1	DOWNSTREAM CR44951 INTERGENIC
2L	10291019	2L_10291019_SNP [dm3] 2L_10291019_SNP [dm6]	T	A	1.252e^-4	1	INTRON CG5604	TF binding site BDTNP1_TFBS_twi
3R	14013252	3R_14013252_SNP [dm3] 3R_18187530_SNP [dm6]	T	C	1.262e^-4	1	SYNONYMOUS_CODING Arp5 DOWNSTREAM CG12321	TF binding site mE1_TFBS_chinmo
2R	10210428	2R_10210428_SNP [dm3] 2R_14322923_SNP [dm6]	A	G	1.269e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
X	20792817	X_20792817_SNP [dm3] X_20921790_SNP [dm6]	C	T	1.272e^-4	1	INTRON shakB
2L	12115996	2L_12115996_SNP [dm3] 2L_12115996_SNP [dm6]	A	G	1.282e^-4	1	INTRON CG17211
3R	8612401	3R_8612401_SNP [dm3] 3R_12786679_SNP [dm6]	C	T	1.283e^-4	1	INTERGENIC
3L	10541739	3L_10541739_SNP [dm3] 3L_10548639_SNP [dm6]	C	A	1.295e^-4	1	INTRON A2bp1
3L	18953291	3L_18953291_SNP [dm3] 3L_18960191_SNP [dm6]	T	G	1.297e^-4	1	INTERGENIC
3L	14875431	3L_14875431_SNP [dm3] 3L_14882331_SNP [dm6]	C	T	1.308e^-4	1	DOWNSTREAM CG17839 INTERGENIC
2R	19845739	2R_19845739_SNP [dm3] 2R_23958216_SNP [dm6]	T	G	1.317e^-4	1	SYNONYMOUS_CODING alpha-catenin-related UPSTREAM CG16787
3L	6455467	3L_6455467_SNP [dm3] 3L_6462367_SNP [dm6]	C	T	1.328e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14582416	2L_14582416_SNP [dm3] 2L_14582416_SNP [dm6]	G	A	1.328e^-4	1	INTERGENIC
2L	6076558	2L_6076558_SNP [dm3] 2L_6076558_SNP [dm6]	T	G	1.335e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16325973	2R_16325973_SNP [dm3] 2R_20438468_SNP [dm6]	A	G	1.346e^-4	1	INTRON CG12484
2R	883176	2R_883176_INS [dm3] 2R_4995671_INS [dm6]	A	AGGCTAGA	1.391e^-4	1	INTRON Ir41a	transposable element FlyBase
X	15088509	X_15088509_SNP [dm3] X_15194476_SNP [dm6]	T	C	1.415e^-4	1	INTERGENIC
2R	10442815	2R_10442815_SNP [dm3] 2R_14555310_SNP [dm6]	G	T	1.417e^-4	1	INTRON ttv
2L	14582805	2L_14582805_SNP [dm3] 2L_14582805_SNP [dm6]	C	T	1.422e^-4	1	INTERGENIC
2R	19843024	2R_19843024_SNP [dm3] 2R_23955501_SNP [dm6]	C	T	1.427e^-4	1	SYNONYMOUS_CODING thoc5 DOWNSTREAM CG16787	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	434219	2L_434219_SNP [dm3] 2L_434219_SNP [dm6]	T	A	1.429e^-4	1	INTRON ex
3L	10861913	3L_10861913_SNP [dm3] 3L_10868813_SNP [dm6]	G	A	1.437e^-4	1	INTRON tna
2R	15088332	2R_15088332_SNP [dm3] 2R_19200827_SNP [dm6]	G	C	1.438e^-4	1	INTRON hppy
2R	18226044	2R_18226044_SNP [dm3] 2R_22338539_SNP [dm6]	C	G	1.452e^-4	1	INTRON Liprin-gamma
3R	8763126	3R_8763126_SNP [dm3] 3R_12937404_SNP [dm6]	G	A	1.467e^-4	1	INTERGENIC
3R	26176131	3R_26176131_SNP [dm3] 3R_30350409_SNP [dm6]	A	G	1.480e^-4	1	INTRON hdc
3R	24191098	3R_24191098_SNP [dm3] 3R_28365376_SNP [dm6]	C	T	1.486e^-4	1	INTERGENIC
3R	22306104	3R_22306104_SNP [dm3] 3R_26480382_SNP [dm6]	C	T	1.489e^-4	1	INTRON plum
3L	18032096	3L_18032096_SNP [dm3] 3L_18038996_SNP [dm6]	T	C	1.490e^-4	1	INTRON Eip75B
2L	6231486	2L_6231486_SNP [dm3] 2L_6231486_SNP [dm6]	A	G	1.494e^-4	1	UPSTREAM CR44823 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3164549	2L_3164549_SNP [dm3] 2L_3164549_SNP [dm6]	C	T	1.506e^-4	1	INTRON Hydr2
3L	10210083	3L_10210083_SNP [dm3] 3L_10216983_SNP [dm6]	G	A	1.510e^-4	1	DOWNSTREAM CG8065 INTERGENIC
2L	9827329	2L_9827329_DEL [dm3] 2L_9827329_DEL [dm6]	CA	T	1.523e^-4	1	INTRON nAChRalpha6
2R	19154498	2R_19154498_INS [dm3] 2R_23266975_INS [dm6]	C	CTCC	1.527e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22374214	3R_22374214_DEL [dm3] 3R_26548492_DEL [dm6]	CC	C	1.534e^-4	1	INTRON scrib	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14980010	3L_14980010_SNP [dm3] 3L_14986910_SNP [dm6]	G	C	1.540e^-4	1	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13385160	2R_13385160_SNP [dm3] 2R_17497655_SNP [dm6]	C	T	1.545e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4385025	X_4385025_SNP [dm3] X_4490992_SNP [dm6]	T	C	1.547e^-4	1	INTRON CR32773
3L	16217947	3L_16217947_SNP [dm3] 3L_16224847_SNP [dm6]	C	T	1.572e^-4	1	INTERGENIC
2L	12091425	2L_12091425_SNP [dm3] 2L_12091425_SNP [dm6]	C	T	1.575e^-4	1	UPSTREAM Pex19 DOWNSTREAM CR44594 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8766326	3R_8766326_SNP [dm3] 3R_12940604_SNP [dm6]	A	G	1.580e^-4	1	INTERGENIC
3L	1944323	3L_1944323_SNP [dm3] 3L_1944323_SNP [dm6]	A	G	1.582e^-4	1	NON_SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad
2R	10210485	2R_10210485_DEL [dm3] 2R_14322980_DEL [dm6]	GGTTAAATTT	G	1.585e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
2R	16688305	2R_16688305_SNP [dm3] 2R_20800800_SNP [dm6]	A	T	1.588e^-4	1	INTERGENIC
3L	11190594	3L_11190594_SNP [dm3] 3L_11197494_SNP [dm6]	G	A	1.594e^-4	1	UTR_5_PRIME GlcAT-P DOWNSTREAM Plod INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	15155927	2L_15155927_SNP [dm3] 2L_15155927_SNP [dm6]	G	A	1.614e^-4	1	INTERGENIC
3R	13004888	3R_13004888_SNP [dm3] 3R_17179166_SNP [dm6]	C	A	1.622e^-4	1	INTRON Mur89F
3L	6270266	3L_6270266_SNP [dm3] 3L_6277166_SNP [dm6]	C	A	1.626e^-4	1	DOWNSTREAM CG43168 INTERGENIC
2R	4677050	2R_4677050_SNP [dm3] 2R_8789545_SNP [dm6]	G	A	1.630e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8994813	2R_8994813_SNP [dm3] 2R_13107308_SNP [dm6]	A	T	1.631e^-4	1	INTERGENIC
2R	836348	2R_836348_SNP [dm3] 2R_4948843_SNP [dm6]	C	G	1.635e^-4	1	INTRON Ir41a
3L	1106492	3L_1106492_SNP [dm3] 3L_1106492_SNP [dm6]	C	T	1.635e^-4	1	INTERGENIC
2L	16322484	2L_16322484_SNP [dm3] 2L_16322484_SNP [dm6]	T	A	1.642e^-4	1	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	10210482	2R_10210482_SNP [dm3] 2R_14322977_SNP [dm6]	T	A	1.646e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
2R	8770820	2R_8770820_SNP [dm3] 2R_12883315_SNP [dm6]	C	T	1.650e^-4	1	UPSTREAM CR45141 DOWNSTREAM Aats-asp INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4652838	3L_4652838_SNP [dm3] 3L_4652838_SNP [dm6]	C	T	1.652e^-4	1	INTRON axo
2R	7725376	2R_7725376_SNP [dm3] 2R_11837871_SNP [dm6]	A	T	1.660e^-4	1	INTRON Sobp	TF binding site BDTNP1_TFBS_prd
2L	898668	2L_898668_SNP [dm3] 2L_898668_SNP [dm6]	C	T	1.666e^-4	1	UTR_5_PRIME Lsp1beta UPSTREAM CR45348	TF binding site mE1_TFBS_cad
2R	18838915	2R_18838915_SNP [dm3] 2R_22951392_SNP [dm6]	A	C	1.670e^-4	1	DOWNSTREAM CR32835 EXON CR32835
3R	24191159	3R_24191159_SNP [dm3] 3R_28365437_SNP [dm6]	T	G	1.674e^-4	1	INTERGENIC
3R	24191161	3R_24191161_SNP [dm3] 3R_28365439_SNP [dm6]	T	G	1.674e^-4	1	INTERGENIC
3L	5572901	3L_5572901_SNP [dm3] 3L_5579801_SNP [dm6]	G	A	1.675e^-4	1	INTERGENIC
X	4384955	X_4384955_SNP [dm3] X_4490922_SNP [dm6]	A	T	1.684e^-4	1	INTRON CR32773
3R	6214991	3R_6214991_SNP [dm3] 3R_10389269_SNP [dm6]	G	C	1.689e^-4	1	UTR_5_PRIME cwo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3332836	2L_3332836_SNP [dm3] 2L_3332836_SNP [dm6]	G	A	1.697e^-4	1	UTR_5_PRIME CG15408 UTR_3_PRIME CG3285	TF binding site mE1_TFBS_cad
3R	8204968	3R_8204968_SNP [dm3] 3R_12379246_SNP [dm6]	A	T	1.699e^-4	1	UTR_3_PRIME GstD7 UPSTREAM GstD8
X	13264325	X_13264325_SNP [dm3] X_13370292_SNP [dm6]	C	T	1.713e^-4	1	SYNONYMOUS_CODING dmrt11E UPSTREAM CG1640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8608584	3R_8608584_SNP [dm3] 3R_12782862_SNP [dm6]	G	A	1.726e^-4	1	INTRON beat-Vc
2R	14048135	2R_14048135_SNP [dm3] 2R_18160630_SNP [dm6]	A	T	1.745e^-4	1	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	16688328	2R_16688328_SNP [dm3] 2R_20800823_SNP [dm6]	A	C	1.749e^-4	1	INTERGENIC
3R	8608586	3R_8608586_SNP [dm3] 3R_12782864_SNP [dm6]	G	A	1.767e^-4	1	INTRON beat-Vc
3R	20356767	3R_20356767_SNP [dm3] 3R_24531045_SNP [dm6]	C	A	1.771e^-4	1	SYNONYMOUS_CODING ana1 UPSTREAM CG13623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11969916	2L_11969916_SNP [dm3] 2L_11969916_SNP [dm6]	G	T	1.774e^-4	1	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16665002	2R_16665002_SNP [dm3] 2R_20777497_SNP [dm6]	G	A	1.781e^-4	1	NON_SYNONYMOUS_CODING CG43710 DOWNSTREAM CG43711
2L	1191944	2L_1191944_SNP [dm3] 2L_1191944_SNP [dm6]	G	A	1.783e^-4	1	INTRON CG5001	TF binding site mE1_TFBS_cad
2R	15140779	2R_15140779_SNP [dm3] 2R_19253274_SNP [dm6]	T	C	1.792e^-4	1	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14128426	X_14128426_SNP [dm3] X_14234393_SNP [dm6]	G	A	1.822e^-4	1	UPSTREAM CG42271 DOWNSTREAM Fbxl4 INTERGENIC
2L	7829598	2L_7829598_SNP [dm3] 2L_7829598_SNP [dm6]	C	T	1.823e^-4	1	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10210086	3L_10210086_SNP [dm3] 3L_10216986_SNP [dm6]	C	T	1.826e^-4	1	DOWNSTREAM CG8065 INTERGENIC
X	13741731	X_13741731_SNP [dm3] X_13847698_SNP [dm6]	A	T	1.833e^-4	1	UTR_3_PRIME mamo
2R	20478955	2R_20478955_SNP [dm3] 2R_24591432_SNP [dm6]	G	T	1.834e^-4	1	INTRON pio	TF binding site BDTNP1_TFBS_prd
2L	7829527	2L_7829527_SNP [dm3] 2L_7829527_SNP [dm6]	T	C	1.836e^-4	1	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8379790	3R_8379790_SNP [dm3] 3R_12554068_SNP [dm6]	A	C	1.837e^-4	1	INTRON Octbeta2R
2L	3868477	2L_3868477_SNP [dm3] 2L_3868477_SNP [dm6]	C	G	1.845e^-4	1	SYNONYMOUS_CODING Cep97 DOWNSTREAM CG3964	TF binding site BDTNP1_TFBS_dl
2L	4791464	2L_4791464_SNP [dm3] 2L_4791464_SNP [dm6]	C	T	1.845e^-4	1	INTRON CG15630
2R	6492101	2R_6492101_SNP [dm3] 2R_10604596_SNP [dm6]	G	A	1.846e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	8811117	3L_8811117_DEL [dm3] 3L_8818017_DEL [dm6]	GC	T	1.847e^-4	1	INTERGENIC
2L	15453783	2L_15453783_SNP [dm3] 2L_15453783_SNP [dm6]	C	A	1.849e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3794812	2R_3794812_SNP [dm3] 2R_7907307_SNP [dm6]	C	G	1.856e^-4	1	NON_SYNONYMOUS_CODING CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8194441	2R_8194441_SNP [dm3] 2R_12306936_SNP [dm6]	C	A	1.858e^-4	1	UPSTREAM SIP2 INTRON CG17739
2L	4792602	2L_4792602_SNP [dm3] 2L_4792602_SNP [dm6]	G	A	1.868e^-4	1	INTRON CG15630
2R	4678277	2R_4678277_SNP [dm3] 2R_8790772_SNP [dm6]	G	A	1.874e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16186452	2L_16186452_SNP [dm3] 2L_16186452_SNP [dm6]	T	C	1.875e^-4	1	INTRON Ca-alpha1D
3R	8608482	3R_8608482_SNP [dm3] 3R_12782760_SNP [dm6]	A	T	1.876e^-4	1	INTRON beat-Vc
2L	6029535	2L_6029535_SNP [dm3] 2L_6029535_SNP [dm6]	T	C	1.881e^-4	1	INTRON CG9109
3L	15653684	3L_15653684_SNP [dm3] 3L_15660584_SNP [dm6]	C	T	1.882e^-4	1	UTR_3_PRIME Eig71Ej UPSTREAM Eig71Ek DOWNSTREAM Eig71Ei
X	4385014	X_4385014_SNP [dm3] X_4490981_SNP [dm6]	G	A	1.886e^-4	1	INTRON CR32773
2L	4122030	2L_4122030_SNP [dm3] 2L_4122030_SNP [dm6]	A	C	1.891e^-4	1	DOWNSTREAM Sr-CIII INTRON Sr-CI
3R	23366857	3R_23366857_SNP [dm3] 3R_27541135_SNP [dm6]	T	A	1.899e^-4	1	INTERGENIC
X	18913910	X_18913910_SNP [dm3] X_19019877_SNP [dm6]	G	A	1.906e^-4	1	INTRON CG43759
X	5917494	X_5917494_SNP [dm3] X_6023461_SNP [dm6]	A	C	1.907e^-4	1	INTERGENIC
2R	13385302	2R_13385302_SNP [dm3] 2R_17497797_SNP [dm6]	C	T	1.908e^-4	1	INTERGENIC
2L	6712308	2L_6712308_SNP [dm3] 2L_6712308_SNP [dm6]	C	G	1.908e^-4	1	UTR_3_PRIME AkhR INTRON AkhR
2R	12447551	2R_12447551_SNP [dm3] 2R_16560046_SNP [dm6]	T	C	1.909e^-4	1	INTRON DAT
2L	16005467	2L_16005467_SNP [dm3] 2L_16005467_SNP [dm6]	A	T	1.913e^-4	1	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
2L	7912814	2L_7912814_SNP [dm3] 2L_7912814_SNP [dm6]	C	A	1.918e^-4	1	INTRON Snoo
2L	16319487	2L_16319487_SNP [dm3] 2L_16319487_SNP [dm6]	C	A	1.918e^-4	1	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	16264291	X_16264291_SNP [dm3] X_16370258_SNP [dm6]	A	T	1.929e^-4	1	UTR_3_PRIME nonA INTRON nonA
2L	4797547	2L_4797547_SNP [dm3] 2L_4797547_SNP [dm6]	A	G	1.934e^-4	1	SYNONYMOUS_CODING Clect27 DOWNSTREAM CG3294
3L	16195063	3L_16195063_SNP [dm3] 3L_16201963_SNP [dm6]	C	T	1.938e^-4	1	SYNONYMOUS_CODING CG33690
2R	9632298	2R_9632298_SNP [dm3] 2R_13744793_SNP [dm6]	A	G	1.951e^-4	1	INTRON fas
2L	14172948	2L_14172948_SNP [dm3] 2L_14172948_SNP [dm6]	C	A	1.952e^-4	1	INTRON CG43333
3L	3808469	3L_3808469_SNP [dm3] 3L_3808469_SNP [dm6]	C	T	1.969e^-4	1	SYNONYMOUS_CODING IntS10 DOWNSTREAM CG32262
3L	16195064	3L_16195064_INS [dm3] 3L_16201964_INS [dm6]	A	AATGCCAATATATAATTATG...	1.982e^-4	1
2R	4900119	2R_4900119_SNP [dm3] 2R_9012614_SNP [dm6]	A	G	2.036e^-4	1	UPSTREAM CG8172 INTRON CG8172	TF binding site mE1_TFBS_chinmo
3L	1944325	3L_1944325_SNP [dm3] 3L_1944325_SNP [dm6]	G	A	2.056e^-4	1	SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad
3L	20978297	3L_20978297_SNP [dm3] 3L_20985197_SNP [dm6]	A	T	2.062e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13953364	2L_13953364_SNP [dm3] 2L_13953364_SNP [dm6]	C	T	2.065e^-4	1	INTRON Ance-3	TF binding site mE1_TFBS_cad
3L	8620453	3L_8620453_SNP [dm3] 3L_8627353_SNP [dm6]	T	C	2.070e^-4	1	INTRON Zasp66
2L	14434259	2L_14434259_SNP [dm3] 2L_14434259_SNP [dm6]	G	T	2.071e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16712669	2R_16712669_SNP [dm3] 2R_20825164_SNP [dm6]	T	A	2.073e^-4	1	INTRON insc	TF binding site mE1_TFBS_cad
2L	2420546	2L_2420546_SNP [dm3] 2L_2420546_SNP [dm6]	A	C	2.076e^-4	1	UPSTREAM CG34447 & 1 other INTERGENIC
3L	1920678	3L_1920678_SNP [dm3] 3L_1920678_SNP [dm6]	T	C	2.077e^-4	1	UPSTREAM Dbx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6645259	3R_6645259_SNP [dm3] 3R_10819537_SNP [dm6]	C	T	2.078e^-4	1	INTERGENIC
2R	18222546	2R_18222546_SNP [dm3] 2R_22335041_SNP [dm6]	A	C	2.086e^-4	1	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl
3L	5429553	3L_5429553_DEL [dm3] 3L_5436453_DEL [dm6]	CC	C	2.088e^-4	1	INTRON CG34391
2L	15238141	2L_15238141_SNP [dm3] 2L_15238141_SNP [dm6]	A	C	2.089e^-4	1	INTRON ZnT35C
2L	10341500	2L_10341500_SNP [dm3] 2L_10341500_SNP [dm6]	T	G	2.092e^-4	1	UTR_3_PRIME SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2R	16688210	2R_16688210_SNP [dm3] 2R_20800705_SNP [dm6]	G	T	2.092e^-4	1	INTERGENIC
2R	14744695	2R_14744695_SNP [dm3] 2R_18857190_SNP [dm6]	T	A	2.108e^-4	1	INTRON Jheh2
2R	11821205	2R_11821205_SNP [dm3] 2R_15933700_SNP [dm6]	A	G	2.125e^-4	1	SYNONYMOUS_CODING Iap2	TF binding site mE1_TFBS_chinmo
2R	8273065	2R_8273065_SNP [dm3] 2R_12385560_SNP [dm6]	G	T	2.132e^-4	1	INTERGENIC
2L	14594202	2L_14594202_SNP [dm3] 2L_14594202_SNP [dm6]	T	C	2.141e^-4	1	INTERGENIC
3L	14875424	3L_14875424_SNP [dm3] 3L_14882324_SNP [dm6]	T	C	2.144e^-4	1	DOWNSTREAM CG17839 INTERGENIC
3R	4714755	3R_4714755_SNP [dm3] 3R_8889033_SNP [dm6]	A	T	2.149e^-4	1	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6492459	3R_6492459_SNP [dm3] 3R_10666737_SNP [dm6]	G	C	2.171e^-4	1	INTERGENIC
2L	16371370	2L_16371370_SNP [dm3] 2L_16371370_SNP [dm6]	G	T	2.183e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16929606	2R_16929606_SNP [dm3] 2R_21042101_SNP [dm6]	A	G	2.197e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11296208	2L_11296208_SNP [dm3] 2L_11296208_SNP [dm6]	T	C	2.203e^-4	1	INTERGENIC
2L	1827014	2L_1827014_SNP [dm3] 2L_1827014_SNP [dm6]	T	A	2.210e^-4	1	UPSTREAM CG31664 INTERGENIC
2L	12345999	2L_12345999_DEL [dm3] 2L_12345999_DEL [dm6]	AGGGCCACATAAGAA...	A	2.211e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3L	10210087	3L_10210087_SNP [dm3] 3L_10216987_SNP [dm6]	A	G	2.217e^-4	1	DOWNSTREAM CG8065 INTERGENIC
2R	16555107	2R_16555107_DEL [dm3] 2R_20667602_DEL [dm6]	TTAACTGTATTAGATTGGT...	T	2.231e^-4	1	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	6029521	2L_6029521_INS [dm3] 2L_6029521_INS [dm6]	C	CTATATCTCC	2.232e^-4	1	INTRON CG9109
X	18230216	X_18230216_SNP [dm3] X_18336183_SNP [dm6]	T	G	2.236e^-4	1	INTRON CG6123
3L	13011648	3L_13011648_SNP [dm3] 3L_13018548_SNP [dm6]	C	A	2.242e^-4	1	SYNONYMOUS_CODING ste14 UPSTREAM mRpL20 EXON CR45445
2R	6492159	2R_6492159_SNP [dm3] 2R_10604654_SNP [dm6]	G	A	2.249e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13385137	2R_13385137_SNP [dm3] 2R_17497632_SNP [dm6]	A	C	2.251e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21856357	2L_21856357_SNP [dm3] 2L_21856357_SNP [dm6]	A	T	2.263e^-4	1	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6493162	3R_6493162_DEL [dm3] 3R_10667440_DEL [dm6]	CTTGCAAC	C	2.272e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21274757	3R_21274757_SNP [dm3] 3R_25449035_SNP [dm6]	T	A	2.282e^-4	1	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18230141	X_18230141_SNP [dm3] X_18336108_SNP [dm6]	G	C	2.287e^-4	1	INTRON CG6123
3R	8720106	3R_8720106_SNP [dm3] 3R_12894384_SNP [dm6]	G	A	2.288e^-4	1	EXON CR33929
2L	11970008	2L_11970008_SNP [dm3] 2L_11970008_SNP [dm6]	G	A	2.290e^-4	1	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6465160	3L_6465160_SNP [dm3] 3L_6472060_SNP [dm6]	C	A	2.293e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22192180	3R_22192180_INS [dm3] 3R_26366458_INS [dm6]	C	CAC	2.298e^-4	1	INTERGENIC
2L	16321509	2L_16321509_SNP [dm3] 2L_16321509_SNP [dm6]	T	C	2.310e^-4	1	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10626187	2L_10626187_SNP [dm3] 2L_10626187_SNP [dm6]	T	C	2.315e^-4	1	INTRON Trim9
3L	2757249	3L_2757249_SNP [dm3] 3L_2757249_SNP [dm6]	C	T	2.316e^-4	1	INTRON Mrtf
2R	7729090	2R_7729090_DEL [dm3] 2R_11841585_DEL [dm6]	ATCA	A	2.335e^-4	1	UPSTREAM CG34229 DOWNSTREAM S2P INTERGENIC
2L	2510025	2L_2510025_SNP [dm3] 2L_2510025_SNP [dm6]	G	C	2.343e^-4	1	INTERGENIC
2R	8507758	2R_8507758_SNP [dm3] 2R_12620253_SNP [dm6]	G	A	2.345e^-4	1	UTR_3_PRIME Galphaq DOWNSTREAM Galphaq & 1 other	TF binding site mE1_TFBS_zfh1
2R	898262	2R_898262_SNP [dm3] 2R_5010757_SNP [dm6]	A	G	2.346e^-4	1	INTRON Ir41a	transposable element FlyBase
2L	7700992	2L_7700992_SNP [dm3] 2L_7700992_SNP [dm6]	T	C	2.362e^-4	1	INTRON Tep2
2L	7441858	2L_7441858_SNP [dm3] 2L_7441858_SNP [dm6]	C	T	2.365e^-4	1	INTRON CG5973
2L	7212767	2L_7212767_SNP [dm3] 2L_7212767_SNP [dm6]	G	T	2.373e^-4	1	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16005513	2L_16005513_SNP [dm3] 2L_16005513_SNP [dm6]	A	T	2.374e^-4	1	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
2R	10197618	2R_10197618_SNP [dm3] 2R_14310113_SNP [dm6]	C	T	2.374e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	2695326	3L_2695326_SNP [dm3] 3L_2695326_SNP [dm6]	G	A	2.382e^-4	1	INTRON Fife
2L	10341495	2L_10341495_INS [dm3] 2L_10341495_INS [dm6]	A	ATACTATACAATAAAG...	2.387e^-4	1	UTR_3_PRIME SamDC UPSTREAM CG31715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	7441712	2L_7441712_SNP [dm3] 2L_7441712_SNP [dm6]	A	T	2.389e^-4	1	UTR_5_PRIME CG5973 INTRON CG5973
2L	8131506	2L_8131506_SNP [dm3] 2L_8131506_SNP [dm6]	C	T	2.394e^-4	1	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2L	4791363	2L_4791363_SNP [dm3] 2L_4791363_SNP [dm6]	T	A	2.401e^-4	1	INTRON CG15630
X	19753494	X_19753494_SNP [dm3] X_19859461_SNP [dm6]	G	A	2.402e^-4	1	DOWNSTREAM CG15618 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	6563905	2L_6563905_SNP [dm3] 2L_6563905_SNP [dm6]	A	G	2.403e^-4	1	SYNONYMOUS_CODING Ent2 DOWNSTREAM CG13766	TF binding site mE1_TFBS_cad
2R	9730488	2R_9730488_SNP [dm3] 2R_13842983_SNP [dm6]	T	C	2.412e^-4	1	UTR_3_PRIME Syngr
3R	20356642	3R_20356642_SNP [dm3] 3R_24530920_SNP [dm6]	T	G	2.414e^-4	1	UPSTREAM CG13623 INTRON ana1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8131557	2L_8131557_SNP [dm3] 2L_8131557_SNP [dm6]	C	T	2.428e^-4	1	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2R	14049512	2R_14049512_SNP [dm3] 2R_18162007_SNP [dm6]	T	C	2.431e^-4	1	SYNONYMOUS_CODING CG10915
3L	8489896	3L_8489896_SNP [dm3] 3L_8496796_SNP [dm6]	C	T	2.448e^-4	1	INTRON CG43163	TF binding site mE1_TFBS_cad
3L	12034615	3L_12034615_SNP [dm3] 3L_12041515_SNP [dm6]	A	T	2.449e^-4	1	UPSTREAM CG6793 INTRON rols
2L	16005474	2L_16005474_SNP [dm3] 2L_16005474_SNP [dm6]	T	A	2.453e^-4	1	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
2R	19840942	2R_19840942_SNP [dm3] 2R_23953419_SNP [dm6]	T	C	2.473e^-4	1	UPSTREAM thoc5 DOWNSTREAM CG2970 INTRON CG3803	TF binding site BDTNP1_TFBS_dl
3R	6475742	3R_6475742_SNP [dm3] 3R_10650020_SNP [dm6]	G	C	2.473e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3132888	3L_3132888_SNP [dm3] 3L_3132888_SNP [dm6]	G	A	2.474e^-4	1	SYNONYMOUS_CODING CG11537 INTRON CG11537	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16793471	2L_16793471_SNP [dm3] 2L_16793471_SNP [dm6]	G	A	2.476e^-4	1	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2R	16711747	2R_16711747_SNP [dm3] 2R_20824242_SNP [dm6]	C	T	2.477e^-4	1	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20356358	3R_20356358_SNP [dm3] 3R_24530636_SNP [dm6]	A	T	2.478e^-4	1	UTR_5_PRIME ana1 UPSTREAM ana1 & 1 other DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13702501	2R_13702501_SNP [dm3] 2R_17814996_SNP [dm6]	C	T	2.480e^-4	1	INTRON grh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6520724	X_6520724_DEL [dm3] X_6626691_DEL [dm6]	GA	T	2.485e^-4	1	INTRON pigs
3R	16254449	3R_16254449_SNP [dm3] 3R_20428727_SNP [dm6]	G	A	2.497e^-4	1	INTRON Gfrl
3R	5376638	3R_5376638_SNP [dm3] 3R_9550916_SNP [dm6]	C	G	2.502e^-4	1	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9873660	3R_9873660_INS [dm3] 3R_14047938_INS [dm6]	A	GC	2.505e^-4	1	INTERGENIC
3L	2756435	3L_2756435_SNP [dm3] 3L_2756435_SNP [dm6]	C	A	2.508e^-4	1	INTRON Mrtf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12632197	3R_12632197_SNP [dm3] 3R_16806475_SNP [dm6]	T	C	2.518e^-4	1	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
3R	13004869	3R_13004869_DEL [dm3] 3R_17179147_DEL [dm6]	CCGGGGTGTG	C	2.518e^-4	1	INTRON Mur89F
3L	2542507	3L_2542507_SNP [dm3] 3L_2542507_SNP [dm6]	A	T	2.521e^-4	1	INTRON Spn	TF binding site mE1_TFBS_cad
3L	18928767	3L_18928767_SNP [dm3] 3L_18935667_SNP [dm6]	A	T	2.522e^-4	1	INTRON CG32204
X	6716573	X_6716573_SNP [dm3] X_6822540_SNP [dm6]	C	T	2.522e^-4	1	SYNONYMOUS_CODING CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8608473	3R_8608473_DEL [dm3] 3R_12782751_DEL [dm6]	TTAAA	T	2.534e^-4	1	INTRON beat-Vc
3L	14875426	3L_14875426_SNP [dm3] 3L_14882326_SNP [dm6]	T	A	2.535e^-4	1	DOWNSTREAM CG17839 INTERGENIC
2L	2844246	2L_2844246_SNP [dm3] 2L_2844246_SNP [dm6]	C	G	2.542e^-4	1	NON_SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3572962	3L_3572962_INS [dm3] 3L_3572962_INS [dm6]	G	GG	2.551e^-4	1	INTRON Eip63E
2R	12212168	2R_12212168_SNP [dm3] 2R_16324663_SNP [dm6]	C	A	2.560e^-4	1	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
X	18914904	X_18914904_SNP [dm3] X_19020871_SNP [dm6]	A	G	2.562e^-4	1	INTRON CG43759	TF binding site mE1_TFBS_HSA
2R	14151769	2R_14151769_SNP [dm3] 2R_18264264_SNP [dm6]	C	T	2.562e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18976288	2R_18976288_SNP [dm3] 2R_23088765_SNP [dm6]	G	A	2.574e^-4	1	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18976293	2R_18976293_SNP [dm3] 2R_23088770_SNP [dm6]	A	T	2.574e^-4	1	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18976296	2R_18976296_SNP [dm3] 2R_23088773_SNP [dm6]	A	G	2.574e^-4	1	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4165794	2L_4165794_SNP [dm3] 2L_4165794_SNP [dm6]	T	C	2.574e^-4	1	NON_SYNONYMOUS_CODING Or24a
X	12172291	X_12172291_SNP [dm3] X_12278258_SNP [dm6]	G	A	2.603e^-4	1	INTRON Ten-a
2R	11469300	2R_11469300_SNP [dm3] 2R_15581795_SNP [dm6]	A	G	2.616e^-4	1	INTERGENIC
3R	15318798	3R_15318798_SNP [dm3] 3R_19493076_SNP [dm6]	C	T	2.634e^-4	1	INTRON Dys
3R	22374186	3R_22374186_SNP [dm3] 3R_26548464_SNP [dm6]	G	A	2.634e^-4	1	INTRON scrib	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13715288	X_13715288_SNP [dm3] X_13821255_SNP [dm6]	G	T	2.652e^-4	1	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	5717867	3R_5717867_SNP [dm3] 3R_9892145_SNP [dm6]	A	T	2.661e^-4	1	INTRON Glut4EF
2R	8966099	2R_8966099_SNP [dm3] 2R_13078594_SNP [dm6]	G	C	2.662e^-4	1	INTRON Drl-2	insulator Insulator_Class_II.mE01
3R	9558035	3R_9558035_SNP [dm3] 3R_13732313_SNP [dm6]	C	T	2.666e^-4	1	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16687657	3R_16687657_SNP [dm3] 3R_20861935_SNP [dm6]	T	A	2.680e^-4	1	SPLICE_SITE_REGION CG3822 INTRON CG3822
2L	4791247	2L_4791247_SNP [dm3] 2L_4791247_SNP [dm6]	A	G	2.698e^-4	1	INTRON CG15630
2L	3323223	2L_3323223_SNP [dm3] 2L_3323223_SNP [dm6]	A	G	2.720e^-4	1	DOWNSTREAM CG8837 INTERGENIC
2L	12827209	2L_12827209_SNP [dm3] 2L_12827209_SNP [dm6]	A	T	2.724e^-4	1	INTERGENIC
3L	13944412	3L_13944412_SNP [dm3] 3L_13951312_SNP [dm6]	C	T	2.728e^-4	1	INTRON CG32137
X	18229872	X_18229872_DEL [dm3] X_18335839_DEL [dm6]	AA	A	2.746e^-4	1	INTRON CG6123
2L	20043584	2L_20043584_MNP [dm3] 2L_20043584_MNP [dm6]	TGTCTTT	CACAAAG	2.747e^-4	1	INTRON sNPF
2R	9495776	2R_9495776_SNP [dm3] 2R_13608271_SNP [dm6]	C	G	2.753e^-4	1	DOWNSTREAM CG12464 INTERGENIC
2L	11296381	2L_11296381_DEL [dm3] 2L_11296381_DEL [dm6]	AA	A	2.757e^-4	1	INTERGENIC
2R	8771662	2R_8771662_SNP [dm3] 2R_12884157_SNP [dm6]	C	A	2.760e^-4	1	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5378230	3R_5378230_DEL [dm3] 3R_9552508_DEL [dm6]	TCTT	T	2.763e^-4	1	UPSTREAM CR42549 & 1 other INTRON RnpS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	20982087	3R_20982087_SNP [dm3] 3R_25156365_SNP [dm6]	T	C	2.763e^-4	1	INTERGENIC
2R	16741168	2R_16741168_SNP [dm3] 2R_20853663_SNP [dm6]	G	A	2.765e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19844490	2R_19844490_SNP [dm3] 2R_23956967_SNP [dm6]	A	G	2.767e^-4	1	SYNONYMOUS_CODING CG16787 UPSTREAM alpha-catenin-related DOWNSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8489895	3L_8489895_SNP [dm3] 3L_8496795_SNP [dm6]	C	T	2.770e^-4	1	INTRON CG43163	TF binding site mE1_TFBS_cad
2R	16277613	2R_16277613_DEL [dm3] 2R_20390108_DEL [dm6]	AA	A	2.770e^-4	1	INTERGENIC
2L	7577404	2L_7577404_SNP [dm3] 2L_7577404_SNP [dm6]	C	T	2.786e^-4	1	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	13237531	2L_13237531_SNP [dm3] 2L_13237531_SNP [dm6]	T	A	2.788e^-4	1	INTRON CG5867
2L	17499534	2L_17499534_SNP [dm3] 2L_17499534_SNP [dm6]	A	G	2.793e^-4	1	SYNONYMOUS_CODING CG6412 UPSTREAM CG15142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13972773	2L_13972773_SNP [dm3] 2L_13972773_SNP [dm6]	G	T	2.801e^-4	1	DOWNSTREAM NimB5 & 1 other INTRON He
2R	11820518	2R_11820518_SNP [dm3] 2R_15933013_SNP [dm6]	T	C	2.837e^-4	1	SYNONYMOUS_CODING Iap2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	5377622	3R_5377622_SNP [dm3] 3R_9551900_SNP [dm6]	G	T	2.852e^-4	1	UPSTREAM RnpS1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	18598763	X_18598763_DEL [dm3] X_18704730_DEL [dm6]	AA	A	2.854e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	893610	2L_893610_SNP [dm3] 2L_893610_SNP [dm6]	G	A	2.856e^-4	1	INTERGENIC
2R	16741087	2R_16741087_DEL [dm3] 2R_20853582_DEL [dm6]	TAGCTGGG	A	2.867e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2420545	2L_2420545_SNP [dm3] 2L_2420545_SNP [dm6]	A	C	2.894e^-4	1	UPSTREAM CG34447 & 1 other INTERGENIC
2R	8194443	2R_8194443_SNP [dm3] 2R_12306938_SNP [dm6]	G	T	2.919e^-4	1	UPSTREAM SIP2 INTRON CG17739
2R	13174837	2R_13174837_SNP [dm3] 2R_17287332_SNP [dm6]	G	T	2.927e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	16340882	2L_16340882_SNP [dm3] 2L_16340882_SNP [dm6]	T	A	2.930e^-4	1	SYNONYMOUS_CODING CG44405 UPSTREAM CG42266	TF binding site mE1_TFBS_sens
3R	14558082	3R_14558082_SNP [dm3] 3R_18732360_SNP [dm6]	C	T	2.931e^-4	1	UPSTREAM CG14302 DOWNSTREAM Mekk1 & 1 other INTERGENIC
2R	16325975	2R_16325975_SNP [dm3] 2R_20438470_SNP [dm6]	C	A	2.933e^-4	1	INTRON CG12484
2L	21962291	2L_21962291_SNP [dm3] 2L_21962291_SNP [dm6]	T	A	2.937e^-4	1	INTERGENIC
3R	10773794	3R_10773794_SNP [dm3] 3R_14948072_SNP [dm6]	C	T	2.944e^-4	1	INTERGENIC
2L	21718739	2L_21718739_SNP [dm3] 2L_21718739_SNP [dm6]	T	C	2.948e^-4	1	INTRON CG31619
3L	15662294	3L_15662294_SNP [dm3] 3L_15669194_SNP [dm6]	T	G	2.952e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	8767722	3R_8767722_SNP [dm3] 3R_12942000_SNP [dm6]	G	T	2.974e^-4	1	INTERGENIC
3R	8204927	3R_8204927_SNP [dm3] 3R_12379205_SNP [dm6]	G	A	2.977e^-4	1	SYNONYMOUS_CODING GstD7 UPSTREAM GstD8
3L	6465044	3L_6465044_SNP [dm3] 3L_6471944_SNP [dm6]	G	A	2.978e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2L	7441521	2L_7441521_SNP [dm3] 2L_7441521_SNP [dm6]	C	T	2.997e^-4	1	UTR_5_PRIME CG5973 INTRON CG5973
2L	898703	2L_898703_SNP [dm3] 2L_898703_SNP [dm6]	C	T	3.024e^-4	1	UTR_5_PRIME Lsp1beta UPSTREAM CR45348	TF binding site mE1_TFBS_cad
2R	4875909	2R_4875909_SNP [dm3] 2R_8988404_SNP [dm6]	C	G	3.024e^-4	1	INTERGENIC
3L	10300973	3L_10300973_SNP [dm3] 3L_10307873_SNP [dm6]	C	T	3.048e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11577002	3L_11577002_SNP [dm3] 3L_11583902_SNP [dm6]	C	T	3.051e^-4	1	SYNONYMOUS_CODING CG32086 DOWNSTREAM rt
2R	14915446	2R_14915446_SNP [dm3] 2R_19027941_SNP [dm6]	G	C	3.065e^-4	1	INTRON 5-HT1B
3R	6700015	3R_6700015_SNP [dm3] 3R_10874293_SNP [dm6]	T	C	3.074e^-4	1	NON_SYNONYMOUS_CODING CG4596	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13971206	3R_13971206_SNP [dm3] 3R_18145484_SNP [dm6]	A	G	3.077e^-4	1	INTERGENIC
X	3643816	X_3643816_SNP [dm3] X_3749783_SNP [dm6]	C	A	3.078e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11955002	2L_11955002_SNP [dm3] 2L_11955002_SNP [dm6]	C	T	3.091e^-4	1	EXON CR43314
2R	6141602	2R_6141602_SNP [dm3] 2R_10254097_SNP [dm6]	T	A	3.098e^-4	1	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3326399	2L_3326399_SNP [dm3] 2L_3326399_SNP [dm6]	A	G	3.099e^-4	1	INTRON CG33281
2R	6797888	2R_6797888_SNP [dm3] 2R_10910383_SNP [dm6]	T	C	3.109e^-4	1	SYNONYMOUS_CODING Obp47a
2L	4351969	2L_4351969_SNP [dm3] 2L_4351969_SNP [dm6]	A	G	3.109e^-4	1	DOWNSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14901849	2R_14901849_SNP [dm3] 2R_19014344_SNP [dm6]	C	A	3.117e^-4	1	INTERGENIC
2L	3520212	2L_3520212_SNP [dm3] 2L_3520212_SNP [dm6]	A	G	3.121e^-4	1	UPSTREAM CG8851 & 1 other INTRON CG8851
2L	4118328	2L_4118328_DEL [dm3] 2L_4118328_DEL [dm6]	CATATCTCT	C	3.124e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	6581568	2R_6581568_INS [dm3] 2R_10694063_INS [dm6]	T	TG	3.131e^-4	1	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	18230150	X_18230150_SNP [dm3] X_18336117_SNP [dm6]	C	G	3.144e^-4	1	INTRON CG6123
3R	8697749	3R_8697749_SNP [dm3] 3R_12872027_SNP [dm6]	A	T	3.145e^-4	1	INTERGENIC
3L	2761576	3L_2761576_SNP [dm3] 3L_2761576_SNP [dm6]	G	A	3.148e^-4	1	INTRON Mrtf	TF binding site mE1_TFBS_cad
2R	14047827	2R_14047827_SNP [dm3] 2R_18160322_SNP [dm6]	A	C	3.151e^-4	1	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	6077385	2L_6077385_SNP [dm3] 2L_6077385_SNP [dm6]	G	T	3.159e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14915476	2R_14915476_SNP [dm3] 2R_19027971_SNP [dm6]	C	A	3.172e^-4	1	INTRON 5-HT1B
2L	4856221	2L_4856221_SNP [dm3] 2L_4856221_SNP [dm6]	T	C	3.175e^-4	1	INTRON pog
3R	12713092	3R_12713092_SNP [dm3] 3R_16887370_SNP [dm6]	C	A	3.176e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16332239	2L_16332239_SNP [dm3] 2L_16332239_SNP [dm6]	C	T	3.200e^-4	1	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3R	13004979	3R_13004979_SNP [dm3] 3R_17179257_SNP [dm6]	A	T	3.212e^-4	1	INTRON Mur89F
2R	8194648	2R_8194648_INS [dm3] 2R_12307143_INS [dm6]	G	GG	3.216e^-4	1	UPSTREAM SIP2 INTRON CG17739
2L	11296937	2L_11296937_DEL [dm3] 2L_11296937_DEL [dm6]	TT	T	3.219e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	20942881	3L_20942881_SNP [dm3] 3L_20949781_SNP [dm6]	A	C	3.223e^-4	1	UPSTREAM fng DOWNSTREAM CR45243 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11246531	3L_11246531_SNP [dm3] 3L_11253431_SNP [dm6]	C	T	3.231e^-4	1	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	7441506	2L_7441506_INS [dm3] 2L_7441506_INS [dm6]	T	TTTT	3.245e^-4	1	UTR_5_PRIME CG5973 INTRON CG5973
3R	8399336	3R_8399336_SNP [dm3] 3R_12573614_SNP [dm6]	C	T	3.255e^-4	1	INTRON Octbeta2R
X	14804793	X_14804793_SNP [dm3] X_14910760_SNP [dm6]	C	T	3.263e^-4	1	SYNONYMOUS_CODING CG14406 INTRON Flo2
2R	16687957	2R_16687957_SNP [dm3] 2R_20800452_SNP [dm6]	A	C	3.269e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9836435	X_9836435_SNP [dm3] X_9942402_SNP [dm6]	T	G	3.280e^-4	1	INTERGENIC
3L	10671886	3L_10671886_SNP [dm3] 3L_10678786_SNP [dm6]	C	A	3.280e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8707146	3R_8707146_SNP [dm3] 3R_12881424_SNP [dm6]	C	T	3.286e^-4	1	INTERGENIC
3R	26189005	3R_26189005_SNP [dm3] 3R_30363283_SNP [dm6]	G	A	3.300e^-4	1	UTR_3_PRIME hdc
2R	18098490	2R_18098490_SNP [dm3] 2R_22210985_SNP [dm6]	T	C	3.303e^-4	1	UPSTREAM CG11291 & 1 other INTERGENIC
3L	1106508	3L_1106508_SNP [dm3] 3L_1106508_SNP [dm6]	A	T	3.305e^-4	1	INTERGENIC
2L	16319546	2L_16319546_SNP [dm3] 2L_16319546_SNP [dm6]	C	A	3.309e^-4	1	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12756606	2L_12756606_SNP [dm3] 2L_12756606_SNP [dm6]	T	G	3.322e^-4	1	INTERGENIC
2R	14915449	2R_14915449_SNP [dm3] 2R_19027944_SNP [dm6]	G	C	3.322e^-4	1	INTRON 5-HT1B
3L	13013961	3L_13013961_SNP [dm3] 3L_13020861_SNP [dm6]	C	T	3.325e^-4	1	INTRON AdenoK
2R	9016045	2R_9016045_SNP [dm3] 2R_13128540_SNP [dm6]	T	A	3.326e^-4	1	DOWNSTREAM CG13326 INTRON CG3955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3816477	2L_3816477_SNP [dm3] 2L_3816477_SNP [dm6]	T	C	3.326e^-4	1	DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	14172952	2L_14172952_SNP [dm3] 2L_14172952_SNP [dm6]	A	T	3.336e^-4	1	INTRON CG43333
3R	22527104	3R_22527104_SNP [dm3] 3R_26701382_SNP [dm6]	C	A	3.341e^-4	1	INTRON amon
2R	12478615	2R_12478615_SNP [dm3] 2R_16591110_SNP [dm6]	G	C	3.356e^-4	1	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
X	10817043	X_10817043_SNP [dm3] X_10923010_SNP [dm6]	A	G	3.360e^-4	1	UTR_3_PRIME CG43901 UPSTREAM v	TF binding site mE1_TFBS_HSA
X	12171630	X_12171630_SNP [dm3] X_12277597_SNP [dm6]	T	G	3.362e^-4	1	INTRON Ten-a
2L	3323077	2L_3323077_SNP [dm3] 2L_3323077_SNP [dm6]	A	T	3.369e^-4	1	UTR_3_PRIME CG8837	TF binding site mE1_TFBS_cad
X	16677335	X_16677335_SNP [dm3] X_16783302_SNP [dm6]	T	C	3.380e^-4	1	UPSTREAM if & 1 other INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	8194330	2R_8194330_SNP [dm3] 2R_12306825_SNP [dm6]	C	T	3.380e^-4	1	UPSTREAM SIP2 INTRON CG17739
3R	13514377	3R_13514377_SNP [dm3] 3R_17688655_SNP [dm6]	C	G	3.396e^-4	1	UTR_3_PRIME osa
3L	947692	3L_947692_SNP [dm3] 3L_947692_SNP [dm6]	T	C	3.431e^-4	1	INTRON Glut1
3L	7548817	3L_7548817_SNP [dm3] 3L_7555717_SNP [dm6]	T	G	3.433e^-4	1	DOWNSTREAM CG14837 INTERGENIC
2R	12115874	2R_12115874_SNP [dm3] 2R_16228369_SNP [dm6]	G	C	3.444e^-4	1	INTRON CG15706 & 1 other	TF binding site mE1_TFBS_chinmo
2R	8994431	2R_8994431_SNP [dm3] 2R_13106926_SNP [dm6]	T	A	3.446e^-4	1	INTERGENIC
3L	4183065	3L_4183065_SNP [dm3] 3L_4183065_SNP [dm6]	G	A	3.447e^-4	1	INTRON CG18675 & 2 others
3R	25721933	3R_25721933_SNP [dm3] 3R_29896211_SNP [dm6]	T	C	3.464e^-4	1	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6682799	3R_6682799_SNP [dm3] 3R_10857077_SNP [dm6]	T	C	3.472e^-4	1	SYNONYMOUS_CODING CG4570 DOWNSTREAM CG4511	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17664186	2L_17664186_SNP [dm3] 2L_17664186_SNP [dm6]	G	A	3.472e^-4	1	SYNONYMOUS_CODING CadN
3L	16759750	3L_16759750_DEL [dm3] 3L_16766650_DEL [dm6]	ATAATT	A	3.479e^-4	1	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14587077	2L_14587077_SNP [dm3] 2L_14587077_SNP [dm6]	T	G	3.480e^-4	1	DOWNSTREAM CG42680 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4288316	2L_4288316_INS [dm3] 2L_4288316_INS [dm6]	A	AACTTAAAGTTTCTCA...	3.486e^-4	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11677854	3L_11677854_SNP [dm3] 3L_11684754_SNP [dm6]	A	G	3.496e^-4	1	DOWNSTREAM TfIIEalpha INTRON Sug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13385514	2R_13385514_SNP [dm3] 2R_17498009_SNP [dm6]	T	C	3.501e^-4	1	INTERGENIC
2R	4664572	2R_4664572_SNP [dm3] 2R_8777067_SNP [dm6]	G	A	3.519e^-4	1	INTERGENIC
2L	7917480	2L_7917480_SNP [dm3] 2L_7917480_SNP [dm6]	C	T	3.530e^-4	1	INTRON Snoo	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10210379	2R_10210379_SNP [dm3] 2R_14322874_SNP [dm6]	T	G	3.540e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med
2L	7924318	2L_7924318_SNP [dm3] 2L_7924318_SNP [dm6]	G	T	3.547e^-4	1	INTRON Snoo
X	22360316	X_22360316_SNP [dm3] X_22958480_SNP [dm6]	C	A	3.554e^-4	1	DOWNSTREAM CG40486 EXON CR45502	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20274360	3R_20274360_DEL [dm3] 3R_24448638_DEL [dm6]	GAG	G	3.557e^-4	1	INTRON nAChRalpha1
2L	16231582	2L_16231582_SNP [dm3] 2L_16231582_SNP [dm6]	G	A	3.558e^-4	1	UTR_5_PRIME CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12919913	3L_12919913_SNP [dm3] 3L_12926813_SNP [dm6]	T	C	3.593e^-4	1	INTERGENIC
3L	3386147	3L_3386147_SNP [dm3] 3L_3386147_SNP [dm6]	A	G	3.606e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8194334	2R_8194334_SNP [dm3] 2R_12306829_SNP [dm6]	G	T	3.618e^-4	1	UPSTREAM SIP2 INTRON CG17739
2L	6580393	2L_6580393_DEL [dm3] 2L_6580393_DEL [dm6]	AAA	A	3.630e^-4	1	INTRON CG11319
2R	16548340	2R_16548340_SNP [dm3] 2R_20660835_SNP [dm6]	G	C	3.637e^-4	1	UTR_3_PRIME Lrt UPSTREAM CG13437
2R	17420148	2R_17420148_SNP [dm3] 2R_21532643_SNP [dm6]	G	T	3.637e^-4	1	UPSTREAM CR44725 INTRON Egfr
2L	18722935	2L_18722935_SNP [dm3] 2L_18722935_SNP [dm6]	C	T	3.641e^-4	1	INTRON CG10348
2R	19841382	2R_19841382_SNP [dm3] 2R_23953859_SNP [dm6]	G	T	3.642e^-4	1	SYNONYMOUS_CODING CG3803 UPSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13004955	3R_13004955_SNP [dm3] 3R_17179233_SNP [dm6]	G	T	3.653e^-4	1	INTRON Mur89F
3R	5376898	3R_5376898_SNP [dm3] 3R_9551176_SNP [dm6]	C	A	3.654e^-4	1	UPSTREAM RnpS1 INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	14557352	3R_14557352_INS [dm3] 3R_18731630_INS [dm6]	A	ATTATATATTATATAATATT...	3.665e^-4	1	UTR_3_PRIME Cha DOWNSTREAM Cha
2R	9495334	2R_9495334_SNP [dm3] 2R_13607829_SNP [dm6]	C	G	3.666e^-4	1	DOWNSTREAM CG12464 INTERGENIC
2L	16335101	2L_16335101_SNP [dm3] 2L_16335101_SNP [dm6]	T	A	3.672e^-4	1	NON_SYNONYMOUS_CODING CG31817
2L	13520038	2L_13520038_SNP [dm3] 2L_13520038_SNP [dm6]	C	A	3.673e^-4	1	INTRON B4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11520045	2L_11520045_SNP [dm3] 2L_11520045_SNP [dm6]	C	T	3.678e^-4	1	SYNONYMOUS_CODING CG14929 DOWNSTREAM CG14930 & 1 other
2R	8765761	2R_8765761_SNP [dm3] 2R_12878256_SNP [dm6]	A	G	3.679e^-4	1	SYNONYMOUS_CODING Nmda1 DOWNSTREAM CR43468 INTRON Aats-asp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18946793	2R_18946793_SNP [dm3] 2R_23059270_SNP [dm6]	T	A	3.684e^-4	1	SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
2L	11710233	2L_11710233_SNP [dm3] 2L_11710233_SNP [dm6]	T	G	3.684e^-4	1	INTERGENIC
2L	10373467	2L_10373467_SNP [dm3] 2L_10373467_SNP [dm6]	G	T	3.688e^-4	1	UTR_3_PRIME CG33303 DOWNSTREAM CG33303 INTRON rho-5
2L	4190170	2L_4190170_SNP [dm3] 2L_4190170_SNP [dm6]	C	T	3.725e^-4	1	SYNONYMOUS_CODING CG3714 DOWNSTREAM lectin-24Db	TF binding site mE1_TFBS_cad
2L	3868591	2L_3868591_SNP [dm3] 2L_3868591_SNP [dm6]	T	C	3.728e^-4	1	INTRON Cep97	TF binding site mE1_TFBS_sens
3R	24190553	3R_24190553_SNP [dm3] 3R_28364831_SNP [dm6]	A	C	3.738e^-4	1	INTERGENIC
3L	14861334	3L_14861334_SNP [dm3] 3L_14868234_SNP [dm6]	T	G	3.741e^-4	1	DOWNSTREAM CG17839 INTRON CG17839	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11737819	2R_11737819_SNP [dm3] 2R_15850314_SNP [dm6]	T	G	3.744e^-4	1	INTRON tun
3R	22306223	3R_22306223_SNP [dm3] 3R_26480501_SNP [dm6]	C	T	3.752e^-4	1	INTRON plum
2L	16049429	2L_16049429_DEL [dm3] 2L_16049429_DEL [dm6]	TA	T	3.753e^-4	1	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22853108	3R_22853108_SNP [dm3] 3R_27027386_SNP [dm6]	C	T	3.755e^-4	1	INTRON RYa-R
X	13379039	X_13379039_SNP [dm3] X_13485006_SNP [dm6]	G	C	3.760e^-4	1	INTRON Neto
2R	20740192	2R_20740192_DEL [dm3] 2R_24852669_DEL [dm6]	CGACATAATGCTGC...	C	3.764e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19841410	2R_19841410_SNP [dm3] 2R_23953887_SNP [dm6]	T	C	3.771e^-4	1	NON_SYNONYMOUS_CODING CG3803 UPSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8766398	3R_8766398_SNP [dm3] 3R_12940676_SNP [dm6]	G	T	3.774e^-4	1	INTERGENIC
3R	11705778	3R_11705778_SNP [dm3] 3R_15880056_SNP [dm6]	T	C	3.781e^-4	1	INTERGENIC
3R	5376822	3R_5376822_DEL [dm3] 3R_9551100_DEL [dm6]	GTTT	G	3.782e^-4	1	UPSTREAM RnpS1 INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	5211514	2L_5211514_SNP [dm3] 2L_5211514_SNP [dm6]	C	T	3.791e^-4	1	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2R	838377	2R_838377_SNP [dm3] 2R_4950872_SNP [dm6]	A	T	3.806e^-4	1	INTRON Ir41a	transposable element FlyBase
3L	10211189	3L_10211189_SNP [dm3] 3L_10218089_SNP [dm6]	A	G	3.816e^-4	1	DOWNSTREAM CG32055 INTERGENIC
2L	13316842	2L_13316842_SNP [dm3] 2L_13316842_SNP [dm6]	T	G	3.817e^-4	1	INTRON CG43778
3R	22477124	3R_22477124_SNP [dm3] 3R_26651402_SNP [dm6]	G	A	3.822e^-4	1	INTRON beat-VII
X	16694704	X_16694704_INS [dm3] X_16800671_INS [dm6]	T	TT	3.823e^-4	1	UTR_5_PRIME CG9132 UPSTREAM CG9132 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	16687700	3R_16687700_SNP [dm3] 3R_20861978_SNP [dm6]	A	C	3.835e^-4	1	INTRON CG3822
2L	3284655	2L_3284655_SNP [dm3] 2L_3284655_SNP [dm6]	C	T	3.835e^-4	1	INTERGENIC
2R	10210366	2R_10210366_SNP [dm3] 2R_14322861_SNP [dm6]	C	G	3.837e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8208667	2R_8208667_SNP [dm3] 2R_12321162_SNP [dm6]	G	T	3.843e^-4	1	UPSTREAM CG13163 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13991711	3R_13991711_SNP [dm3] 3R_18165989_SNP [dm6]	C	G	3.849e^-4	1	DOWNSTREAM Cbp20 & 1 other INTRON CG7215 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4134922	X_4134922_SNP [dm3] X_4240889_SNP [dm6]	A	G	3.862e^-4	1	DOWNSTREAM Femcoat INTERGENIC
2R	4695701	2R_4695701_SNP [dm3] 2R_8808196_SNP [dm6]	A	G	3.863e^-4	1	INTRON sns	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14424245	2L_14424245_SNP [dm3] 2L_14424245_SNP [dm6]	T	C	3.867e^-4	1	DOWNSTREAM Cpr35B INTERGENIC	TF binding site mE1_TFBS_cad
3L	10674669	3L_10674669_SNP [dm3] 3L_10681569_SNP [dm6]	G	T	3.870e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	19842965	2R_19842965_SNP [dm3] 2R_23955442_SNP [dm6]	T	C	3.880e^-4	1	DOWNSTREAM CG16787 INTRON thoc5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2748193	3L_2748193_SNP [dm3] 3L_2748193_SNP [dm6]	G	T	3.888e^-4	1	INTRON Mrtf
3L	11195654	3L_11195654_SNP [dm3] 3L_11202554_SNP [dm6]	T	A	3.888e^-4	1	DOWNSTREAM CG14141 INTRON Plod
3R	26176039	3R_26176039_SNP [dm3] 3R_30350317_SNP [dm6]	T	C	3.889e^-4	1	INTRON hdc
2R	8772435	2R_8772435_SNP [dm3] 2R_12884930_SNP [dm6]	G	T	3.900e^-4	1	UTR_5_PRIME vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11441873	3L_11441873_SNP [dm3] 3L_11448773_SNP [dm6]	C	T	3.916e^-4	1	INTERGENIC
2L	16187352	2L_16187352_SNP [dm3] 2L_16187352_SNP [dm6]	G	A	3.928e^-4	1	INTRON Ca-alpha1D	TF binding site mE1_TFBS_kn
X	22346778	X_22346778_SNP [dm3] X_22944942_SNP [dm6]	G	A	3.937e^-4	1	UPSTREAM CG41106 INTERGENIC	transposable element FlyBase
3L	11339739	3L_11339739_SNP [dm3] 3L_11346639_SNP [dm6]	C	T	3.944e^-4	1	INTERGENIC
3R	14529535	3R_14529535_SNP [dm3] 3R_18703813_SNP [dm6]	A	G	3.946e^-4	1	INTERGENIC
X	3643465	X_3643465_SNP [dm3] X_3749432_SNP [dm6]	A	T	3.950e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23508056	3R_23508056_SNP [dm3] 3R_27682334_SNP [dm6]	T	G	3.961e^-4	1	UPSTREAM Sce INTERGENIC
3R	15146543	3R_15146543_DEL [dm3] 3R_19320821_DEL [dm6]	AATACAATATTTC...	A	3.967e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	19525385	2R_19525385_SNP [dm3] 2R_23637862_SNP [dm6]	C	T	3.968e^-4	1	DOWNSTREAM CR45153 INTRON retn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8356725	3L_8356725_SNP [dm3] 3L_8363625_SNP [dm6]	A	G	3.969e^-4	1	INTERGENIC
X	15247376	X_15247376_SNP [dm3] X_15353343_SNP [dm6]	G	T	3.978e^-4	1	SYNONYMOUS_CODING acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22360610	X_22360610_SNP [dm3] X_22958774_SNP [dm6]	T	G	3.992e^-4	1	DOWNSTREAM CG40486 EXON CR45502	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8150337	2R_8150337_DEL [dm3] 2R_12262832_DEL [dm6]	TA	C	4.008e^-4	1	INTRON Cam
3R	26173241	3R_26173241_SNP [dm3] 3R_30347519_SNP [dm6]	C	A	4.010e^-4	1	INTRON hdc
2R	11821028	2R_11821028_SNP [dm3] 2R_15933523_SNP [dm6]	G	T	4.010e^-4	1	SYNONYMOUS_CODING Iap2	TF binding site mE1_TFBS_chinmo
2L	12756522	2L_12756522_SNP [dm3] 2L_12756522_SNP [dm6]	A	T	4.015e^-4	1	INTERGENIC
2R	20724865	2R_20724865_SNP [dm3] 2R_24837342_SNP [dm6]	C	T	4.018e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14895969	3L_14895969_SNP [dm3] 3L_14902869_SNP [dm6]	A	T	4.021e^-4	1	UPSTREAM DCX-EMAP INTERGENIC
2L	8268705	2L_8268705_SNP [dm3] 2L_8268705_SNP [dm6]	C	T	4.035e^-4	1	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9485874	2R_9485874_SNP [dm3] 2R_13598369_SNP [dm6]	C	T	4.038e^-4	1	SYNONYMOUS_CODING S-Lap5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23550946	3R_23550946_SNP [dm3] 3R_27725224_SNP [dm6]	A	G	4.041e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3327474	2L_3327474_DEL [dm3] 2L_3327474_DEL [dm6]	TT	T	4.041e^-4	1	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2R	7289984	2R_7289984_SNP [dm3] 2R_11402479_SNP [dm6]	C	T	4.043e^-4	1	INTERGENIC
X	5016121	X_5016121_SNP [dm3] X_5122088_SNP [dm6]	C	A	4.044e^-4	1	INTRON rg & 1 other
2R	8994432	2R_8994432_SNP [dm3] 2R_13106927_SNP [dm6]	A	C	4.045e^-4	1	INTERGENIC
3R	11294941	3R_11294941_SNP [dm3] 3R_15469219_SNP [dm6]	C	A	4.056e^-4	1	INTRON AdamTS-A
2R	11685904	2R_11685904_SNP [dm3] 2R_15798399_SNP [dm6]	C	A	4.068e^-4	1	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	16320183	2L_16320183_SNP [dm3] 2L_16320183_SNP [dm6]	A	T	4.069e^-4	1	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15148362	3R_15148362_SNP [dm3] 3R_19322640_SNP [dm6]	C	G	4.073e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16331908	2L_16331908_SNP [dm3] 2L_16331908_SNP [dm6]	T	A	4.077e^-4	1	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
2R	6486696	2R_6486696_INS [dm3] 2R_10599191_INS [dm6]	T	TGCAATTGAG	4.082e^-4	1	INTRON psq
2R	14183250	2R_14183250_SNP [dm3] 2R_18295745_SNP [dm6]	T	A	4.083e^-4	1	UPSTREAM CG18537 DOWNSTREAM CG18536 INTRON sbb
2R	14183257	2R_14183257_SNP [dm3] 2R_18295752_SNP [dm6]	T	C	4.090e^-4	1	UPSTREAM CG18537 DOWNSTREAM CG18536 INTRON sbb
2L	11296449	2L_11296449_SNP [dm3] 2L_11296449_SNP [dm6]	A	T	4.093e^-4	1	INTERGENIC
2L	2338757	2L_2338757_SNP [dm3] 2L_2338757_SNP [dm6]	C	A	4.096e^-4	1	SPLICE_SITE_REGION eys INTRON CG9967 & 1 other
2R	8768553	2R_8768553_SNP [dm3] 2R_12881048_SNP [dm6]	G	C	4.096e^-4	1	SYNONYMOUS_CODING Aats-asp UPSTREAM Nmda1 DOWNSTREAM CR45141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	22392358	3R_22392358_SNP [dm3] 3R_26566636_SNP [dm6]	G	A	4.096e^-4	1	INTRON scrib	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	15993270	2L_15993270_SNP [dm3] 2L_15993270_SNP [dm6]	A	G	4.110e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16431249	3L_16431249_SNP [dm3] 3L_16438149_SNP [dm6]	A	G	4.110e^-4	1	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	14875428	3L_14875428_SNP [dm3] 3L_14882328_SNP [dm6]	G	A	4.118e^-4	1	DOWNSTREAM CG17839 INTERGENIC
2L	21937144	2L_21937144_SNP [dm3] 2L_21937144_SNP [dm6]	G	C	4.129e^-4	1	INTERGENIC
3R	12659622	3R_12659622_SNP [dm3] 3R_16833900_SNP [dm6]	T	A	4.130e^-4	1	DOWNSTREAM iab-8 INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	7772970	3R_7772970_SNP [dm3] 3R_11947248_SNP [dm6]	C	T	4.134e^-4	1	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11737410	3L_11737410_SNP [dm3] 3L_11744310_SNP [dm6]	A	T	4.147e^-4	1	INTRON CG6024
3L	11194993	3L_11194993_SNP [dm3] 3L_11201893_SNP [dm6]	A	G	4.157e^-4	1	SYNONYMOUS_CODING CG14141 INTRON Plod
2L	8533745	2L_8533745_SNP [dm3] 2L_8533745_SNP [dm6]	A	G	4.167e^-4	1	INTRON CG17834	TF binding site mE1_TFBS_cad
2R	8771342	2R_8771342_SNP [dm3] 2R_12883837_SNP [dm6]	A	G	4.177e^-4	1	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
2R	16437194	2R_16437194_SNP [dm3] 2R_20549689_SNP [dm6]	G	A	4.180e^-4	1	SYNONYMOUS_CODING Cpr57A UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2396072	3L_2396072_SNP [dm3] 3L_2396072_SNP [dm6]	A	T	4.198e^-4	1	INTRON CG45186
2L	16317903	2L_16317903_SNP [dm3] 2L_16317903_SNP [dm6]	C	T	4.220e^-4	1	INTRON cact	TF binding site BDTNP1_TFBS_twi
2L	16335165	2L_16335165_SNP [dm3] 2L_16335165_SNP [dm6]	C	A	4.224e^-4	1	SYNONYMOUS_CODING CG31817
2R	14901309	2R_14901309_SNP [dm3] 2R_19013804_SNP [dm6]	G	A	4.236e^-4	1	INTERGENIC
3L	3584749	3L_3584749_SNP [dm3] 3L_3584749_SNP [dm6]	G	C	4.236e^-4	1	INTRON Eip63E
3R	12609342	3R_12609342_SNP [dm3] 3R_16783620_SNP [dm6]	T	C	4.244e^-4	1	EXON CR44945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16331902	2L_16331902_SNP [dm3] 2L_16331902_SNP [dm6]	T	A	4.246e^-4	1	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3R	6694701	3R_6694701_SNP [dm3] 3R_10868979_SNP [dm6]	G	C	4.274e^-4	1	UTR_5_PRIME Tsp86D UPSTREAM SelR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8766910	2R_8766910_SNP [dm3] 2R_12879405_SNP [dm6]	T	C	4.281e^-4	1	UPSTREAM Nmda1 & 1 other INTRON Aats-asp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
2L	16370280	2L_16370280_SNP [dm3] 2L_16370280_SNP [dm6]	T	C	4.296e^-4	1	INTERGENIC
2L	10184156	2L_10184156_SNP [dm3] 2L_10184156_SNP [dm6]	G	A	4.310e^-4	1	INTRON Sur
2R	18067050	2R_18067050_SNP [dm3] 2R_22179545_SNP [dm6]	G	T	4.312e^-4	1	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1170951	3L_1170951_DEL [dm3] 3L_1170951_DEL [dm6]	TGCCAACT	T	4.317e^-4	1	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8711780	3L_8711780_SNP [dm3] 3L_8718680_SNP [dm6]	T	A	4.329e^-4	1	DOWNSTREAM SrpRbeta INTERGENIC
2L	20302428	2L_20302428_DEL [dm3] 2L_20302428_DEL [dm6]	TTA	C	4.338e^-4	1	INTERGENIC
2R	10001604	2R_10001604_SNP [dm3] 2R_14114099_SNP [dm6]	A	G	4.352e^-4	1	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	8771205	2R_8771205_SNP [dm3] 2R_12883700_SNP [dm6]	T	A	4.352e^-4	1	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
3R	21428666	3R_21428666_SNP [dm3] 3R_25602944_SNP [dm6]	T	C	4.355e^-4	1	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
X	6109420	X_6109420_SNP [dm3] X_6215387_SNP [dm6]	G	A	4.370e^-4	1	INTERGENIC
3R	16246772	3R_16246772_SNP [dm3] 3R_20421050_SNP [dm6]	T	C	4.370e^-4	1	INTRON Gfrl
2L	13943696	2L_13943696_SNP [dm3] 2L_13943696_SNP [dm6]	A	T	4.371e^-4	1	INTRON Ance-3
2L	19134272	2L_19134272_INS [dm3] 2L_19134272_INS [dm6]	T	TT	4.383e^-4	1	UTR_5_PRIME brat UPSTREAM l_2_37Cg INTRON l_2_37Cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14081045	2L_14081045_DEL [dm3] 2L_14081045_DEL [dm6]	TGGCACATT	T	4.385e^-4	1	INTRON nAChRalpha5
X	4970808	X_4970808_SNP [dm3] X_5076775_SNP [dm6]	G	T	4.386e^-4	1	UTR_3_PRIME CG32767
2R	11821250	2R_11821250_SNP [dm3] 2R_15933745_SNP [dm6]	A	G	4.387e^-4	1	SYNONYMOUS_CODING Iap2	TF binding site mE1_TFBS_chinmo
3L	758231	3L_758231_SNP [dm3] 3L_758231_SNP [dm6]	T	C	4.392e^-4	1	INTERGENIC
2L	6823148	2L_6823148_DEL [dm3] 2L_6823148_DEL [dm6]	AA	A	4.408e^-4	1	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14896835	3L_14896835_DEL [dm3] 3L_14903735_DEL [dm6]	CTC	C	4.408e^-4	1	UPSTREAM DCX-EMAP INTERGENIC
2R	16442794	2R_16442794_SNP [dm3] 2R_20555289_SNP [dm6]	A	C	4.421e^-4	1	INTERGENIC
3R	5028299	3R_5028299_SNP [dm3] 3R_9202577_SNP [dm6]	G	A	4.434e^-4	1	INTRON pum
2R	5341668	2R_5341668_SNP [dm3] 2R_9454163_SNP [dm6]	T	C	4.439e^-4	1	UPSTREAM CG33758 DOWNSTREAM CG33757 INTRON Camta
3L	14359129	3L_14359129_SNP [dm3] 3L_14366029_SNP [dm6]	T	A	4.456e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7829662	2L_7829662_SNP [dm3] 2L_7829662_SNP [dm6]	C	T	4.459e^-4	1	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	3681255	3L_3681255_SNP [dm3] 3L_3681255_SNP [dm6]	C	T	4.478e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15511601	2L_15511601_SNP [dm3] 2L_15511601_SNP [dm6]	C	T	4.487e^-4	1	INTERGENIC
X	20279508	X_20279508_SNP [dm3] X_20408481_SNP [dm6]	C	T	4.493e^-4	1	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	6029579	2L_6029579_SNP [dm3] 2L_6029579_SNP [dm6]	T	G	4.502e^-4	1	INTRON CG9109
2L	14363048	2L_14363048_SNP [dm3] 2L_14363048_SNP [dm6]	C	T	4.519e^-4	1	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	2563045	3L_2563045_SNP [dm3] 3L_2563045_SNP [dm6]	C	A	4.527e^-4	1	INTRON msn
X	13697509	X_13697509_SNP [dm3] X_13803476_SNP [dm6]	G	A	4.527e^-4	1	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med
2R	16689800	2R_16689800_SNP [dm3] 2R_20802295_SNP [dm6]	T	A	4.530e^-4	1	INTERGENIC
3R	24191162	3R_24191162_SNP [dm3] 3R_28365440_SNP [dm6]	A	T	4.530e^-4	1	INTERGENIC
2R	837479	2R_837479_SNP [dm3] 2R_4949974_SNP [dm6]	C	T	4.535e^-4	1	INTRON Ir41a
3R	11484511	3R_11484511_SNP [dm3] 3R_15658789_SNP [dm6]	C	G	4.556e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3531766	2L_3531766_SNP [dm3] 2L_3531766_SNP [dm6]	A	G	4.565e^-4	1	SYNONYMOUS_CODING Che-13	TF binding site mE1_TFBS_sens
2L	3534610	2L_3534610_SNP [dm3] 2L_3534610_SNP [dm6]	A	C	4.580e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10552763	3R_10552763_SNP [dm3] 3R_14727041_SNP [dm6]	T	A	4.586e^-4	1	INTRON CG7530
3L	1191427	3L_1191427_SNP [dm3] 3L_1191427_SNP [dm6]	A	T	4.587e^-4	1	DOWNSTREAM CG13912 INTRON Trh	TF binding site mE1_TFBS_cad
3R	8600097	3R_8600097_SNP [dm3] 3R_12774375_SNP [dm6]	G	T	4.591e^-4	1	INTRON beat-Vc
2R	14619551	2R_14619551_SNP [dm3] 2R_18732046_SNP [dm6]	C	A	4.592e^-4	1	INTRON Hs3st-A
3R	16246792	3R_16246792_SNP [dm3] 3R_20421070_SNP [dm6]	T	A	4.596e^-4	1	INTRON Gfrl
3L	2757977	3L_2757977_SNP [dm3] 3L_2757977_SNP [dm6]	G	T	4.604e^-4	1	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
X	22049541	X_22049541_SNP [dm3] X_22647705_SNP [dm6]	A	G	4.607e^-4	1	INTERGENIC
2L	14075986	2L_14075986_INS [dm3] 2L_14075986_INS [dm6]	A	AA	4.614e^-4	1	INTRON nAChRalpha5
3L	20936267	3L_20936267_SNP [dm3] 3L_20943167_SNP [dm6]	T	C	4.616e^-4	1	INTRON fng
3R	25544408	3R_25544408_SNP [dm3] 3R_29718686_SNP [dm6]	G	A	4.622e^-4	1	UTR_5_PRIME CG15506	regulatory region REDfly_CRMs
2L	8700161	2L_8700161_SNP [dm3] 2L_8700161_SNP [dm6]	C	T	4.626e^-4	1	UPSTREAM Hnf4 INTRON Hnf4
3L	12919938	3L_12919938_SNP [dm3] 3L_12926838_SNP [dm6]	T	G	4.634e^-4	1	INTERGENIC
2L	18376366	2L_18376366_SNP [dm3] 2L_18376366_SNP [dm6]	G	A	4.641e^-4	1	INTRON Fas3
3L	15032125	3L_15032125_SNP [dm3] 3L_15039025_SNP [dm6]	G	A	4.652e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8768264	2R_8768264_SNP [dm3] 2R_12880759_SNP [dm6]	C	A	4.662e^-4	1	UPSTREAM Nmda1 DOWNSTREAM CR45141 INTRON Aats-asp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15099800	3R_15099800_SNP [dm3] 3R_19274078_SNP [dm6]	G	C	4.677e^-4	1	INTERGENIC
X	18746137	X_18746137_SNP [dm3] X_18852104_SNP [dm6]	C	A	4.695e^-4	1	SYNONYMOUS_CODING CG34422	TF binding site mE1_TFBS_chinmo
2R	11818023	2R_11818023_SNP [dm3] 2R_15930518_SNP [dm6]	T	A	4.697e^-4	1	INTRON bdg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	9836441	X_9836441_DEL [dm3] X_9942408_DEL [dm6]	GGCAG	G	4.701e^-4	1	INTERGENIC
2R	14901977	2R_14901977_SNP [dm3] 2R_19014472_SNP [dm6]	A	T	4.703e^-4	1	INTERGENIC
2R	895473	2R_895473_SNP [dm3] 2R_5007968_SNP [dm6]	T	G	4.708e^-4	1	INTRON Ir41a	transposable element FlyBase
2R	10181062	2R_10181062_SNP [dm3] 2R_14293557_SNP [dm6]	T	A	4.721e^-4	1	UTR_3_PRIME Ih DOWNSTREAM Ih INTRON Ih
3L	10674783	3L_10674783_SNP [dm3] 3L_10681683_SNP [dm6]	T	C	4.727e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	10443069	2R_10443069_SNP [dm3] 2R_14555564_SNP [dm6]	A	G	4.730e^-4	1	INTRON ttv
3R	22263401	3R_22263401_DEL [dm3] 3R_26437679_DEL [dm6]	ACGC	A	4.732e^-4	1	INTERGENIC
3R	14974552	3R_14974552_SNP [dm3] 3R_19148830_SNP [dm6]	T	A	4.733e^-4	1	UTR_3_PRIME CG5835 UPSTREAM Ppcs & 1 other
3R	3059967	3R_3059967_SNP [dm3] 3R_7234245_SNP [dm6]	A	T	4.740e^-4	1	INTRON CG14608
3L	6888190	3L_6888190_SNP [dm3] 3L_6895090_SNP [dm6]	G	T	4.742e^-4	1	INTERGENIC
2L	6793148	2L_6793148_SNP [dm3] 2L_6793148_SNP [dm6]	C	T	4.748e^-4	1	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10341527	2L_10341527_SNP [dm3] 2L_10341527_SNP [dm6]	A	G	4.754e^-4	1	UPSTREAM CG31715 DOWNSTREAM SamDC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	1190954	2L_1190954_SNP [dm3] 2L_1190954_SNP [dm6]	G	C	4.754e^-4	1	INTRON CG5001
2R	18742928	2R_18742928_SNP [dm3] 2R_22855405_SNP [dm6]	C	T	4.765e^-4	1	DOWNSTREAM inaD INTRON RpL23	TF binding site mE1_TFBS_cad
3R	16246770	3R_16246770_SNP [dm3] 3R_20421048_SNP [dm6]	C	T	4.770e^-4	1	INTRON Gfrl
3R	4600817	3R_4600817_SNP [dm3] 3R_8775095_SNP [dm6]	A	G	4.771e^-4	1	NON_SYNONYMOUS_CODING Pif1B UTR_3_PRIME Pif1A
2L	12336331	2L_12336331_SNP [dm3] 2L_12336331_SNP [dm6]	A	T	4.788e^-4	1	INTERGENIC
X	12693381	X_12693381_SNP [dm3] X_12799348_SNP [dm6]	A	T	4.799e^-4	1	INTRON Pde9
3L	4689558	3L_4689558_SNP [dm3] 3L_4689558_SNP [dm6]	G	A	4.812e^-4	1	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14009150	3R_14009150_SNP [dm3] 3R_18183428_SNP [dm6]	T	C	4.815e^-4	1	UTR_5_PRIME cdm DOWNSTREAM CG7208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8770765	2R_8770765_SNP [dm3] 2R_12883260_SNP [dm6]	A	G	4.816e^-4	1	UPSTREAM CR45141 DOWNSTREAM Aats-asp INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11140288	X_11140288_SNP [dm3] X_11246255_SNP [dm6]	T	C	4.817e^-4	1	INTRON CG44422
3L	2529140	3L_2529140_SNP [dm3] 3L_2529140_SNP [dm6]	A	T	4.844e^-4	1	INTRON Spn
2R	8770098	2R_8770098_SNP [dm3] 2R_12882593_SNP [dm6]	G	A	4.845e^-4	1	INTRON Aats-asp EXON CR45141
3R	22783711	3R_22783711_DEL [dm3] 3R_26957989_DEL [dm6]	TT	T	4.849e^-4	1	INTRON CG6330
2R	8771331	2R_8771331_SNP [dm3] 2R_12883826_SNP [dm6]	A	T	4.861e^-4	1	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
2R	10210098	2R_10210098_SNP [dm3] 2R_14322593_SNP [dm6]	C	T	4.873e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5665181	X_5665181_SNP [dm3] X_5771148_SNP [dm6]	C	A	4.888e^-4	1	UPSTREAM CG3097 INTRON CG42699	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7416098	2R_7416098_SNP [dm3] 2R_11528593_SNP [dm6]	A	G	4.901e^-4	1	UPSTREAM en INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
X	9836597	X_9836597_SNP [dm3] X_9942564_SNP [dm6]	T	C	4.902e^-4	1	INTERGENIC
2L	9069810	2L_9069810_SNP [dm3] 2L_9069810_SNP [dm6]	C	G	4.903e^-4	1	INTRON CG31708
3L	7548877	3L_7548877_SNP [dm3] 3L_7555777_SNP [dm6]	T	C	4.907e^-4	1	DOWNSTREAM CG14837 INTERGENIC
3L	1172078	3L_1172078_SNP [dm3] 3L_1172078_SNP [dm6]	G	A	4.907e^-4	1	INTRON bab2	regulatory region REDfly_CRMs
2L	6549351	2L_6549351_SNP [dm3] 2L_6549351_SNP [dm6]	G	A	4.907e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	474887	2L_474887_DEL [dm3] 2L_474887_DEL [dm6]	ATAT	A	4.910e^-4	1	INTRON CG4297 & 1 other	TF binding site mE1_TFBS_cad
2R	8194740	2R_8194740_SNP [dm3] 2R_12307235_SNP [dm6]	C	T	4.925e^-4	1	UPSTREAM SIP2 INTRON CG17739
X	5701543	X_5701543_SNP [dm3] X_5807510_SNP [dm6]	A	G	4.938e^-4	1	INTERGENIC
3R	12634175	3R_12634175_SNP [dm3] 3R_16808453_SNP [dm6]	T	C	4.951e^-4	1	UTR_3_PRIME abd-A
2R	14915518	2R_14915518_SNP [dm3] 2R_19028013_SNP [dm6]	C	T	4.965e^-4	1	INTRON 5-HT1B
3L	20947073	3L_20947073_SNP [dm3] 3L_20953973_SNP [dm6]	G	A	4.968e^-4	1	INTERGENIC
2R	18257846	2R_18257846_SNP [dm3] 2R_22370341_SNP [dm6]	G	C	4.973e^-4	1	INTRON Liprin-gamma
3R	6493463	3R_6493463_SNP [dm3] 3R_10667741_SNP [dm6]	G	T	4.978e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8190735	2R_8190735_SNP [dm3] 2R_12303230_SNP [dm6]	C	G	4.989e^-4	1	NON_SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
2L	13237550	2L_13237550_SNP [dm3] 2L_13237550_SNP [dm6]	T	G	4.990e^-4	1	INTRON CG5867
3R	9544262	3R_9544262_SNP [dm3] 3R_13718540_SNP [dm6]	C	A	4.994e^-4	1	UPSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24189947	3R_24189947_SNP [dm3] 3R_28364225_SNP [dm6]	A	G	4.996e^-4	1	INTERGENIC
3R	24201421	3R_24201421_SNP [dm3] 3R_28375699_SNP [dm6]	T	G	5.002e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16331913	2L_16331913_SNP [dm3] 2L_16331913_SNP [dm6]	G	T	5.007e^-4	1	SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3L	10674768	3L_10674768_SNP [dm3] 3L_10681668_SNP [dm6]	T	C	5.010e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	16529339	2L_16529339_SNP [dm3] 2L_16529339_SNP [dm6]	A	G	5.013e^-4	1	UPSTREAM mir-4943 & 1 other INTRON CG5953
3R	7552020	3R_7552020_SNP [dm3] 3R_11726298_SNP [dm6]	C	A	5.015e^-4	1	INTRON CG12594
2L	2540989	2L_2540989_SNP [dm3] 2L_2540989_SNP [dm6]	G	A	5.038e^-4	1	INTERGENIC
2R	10281661	2R_10281661_SNP [dm3] 2R_14394156_SNP [dm6]	A	G	5.040e^-4	1	INTERGENIC
2R	11639256	2R_11639256_SNP [dm3] 2R_15751751_SNP [dm6]	G	A	5.054e^-4	1	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20765303	2R_20765303_SNP [dm3] 2R_24877780_SNP [dm6]	G	C	5.076e^-4	1	INTRON CG44247	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8730871	3R_8730871_SNP [dm3] 3R_12905149_SNP [dm6]	C	A	5.102e^-4	1	INTERGENIC
2L	12756585	2L_12756585_SNP [dm3] 2L_12756585_SNP [dm6]	T	A	5.109e^-4	1	INTERGENIC
2R	6486678	2R_6486678_SNP [dm3] 2R_10599173_SNP [dm6]	G	T	5.109e^-4	1	INTRON psq
2L	7707166	2L_7707166_SNP [dm3] 2L_7707166_SNP [dm6]	A	G	5.116e^-4	1	NON_SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990	TF binding site mE1_TFBS_inv
3L	16663156	3L_16663156_SNP [dm3] 3L_16670056_SNP [dm6]	A	T	5.122e^-4	1	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8772415	2R_8772415_SNP [dm3] 2R_12884910_SNP [dm6]	A	G	5.135e^-4	1	UTR_5_PRIME vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3530643	2L_3530643_SNP [dm3] 2L_3530643_SNP [dm6]	C	T	5.137e^-4	1	UPSTREAM Che-13 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3284616	2L_3284616_SNP [dm3] 2L_3284616_SNP [dm6]	G	A	5.141e^-4	1	INTERGENIC
2R	8759777	2R_8759777_SNP [dm3] 2R_12872272_SNP [dm6]	C	A	5.145e^-4	1	UPSTREAM CR43469 DOWNSTREAM CG3790 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10431347	X_10431347_SNP [dm3] X_10537314_SNP [dm6]	T	A	5.164e^-4	1	INTRON spri	TF binding site mE1_TFBS_inv
2L	581518	2L_581518_SNP [dm3] 2L_581518_SNP [dm6]	G	C	5.186e^-4	1	INTERGENIC
3L	2183985	3L_2183985_DEL [dm3] 3L_2183985_DEL [dm6]	AAGCTTATGATATTA...	A	5.188e^-4	1	INTERGENIC
2L	6817301	2L_6817301_SNP [dm3] 2L_6817301_SNP [dm6]	C	T	5.189e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20356051	3R_20356051_SNP [dm3] 3R_24530329_SNP [dm6]	G	T	5.192e^-4	1	UTR_5_PRIME CG13623 UPSTREAM ana1 DOWNSTREAM CG6607	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4182961	3L_4182961_SNP [dm3] 3L_4182961_SNP [dm6]	A	T	5.193e^-4	1	INTRON CG18675 & 2 others
2R	16834639	2R_16834639_SNP [dm3] 2R_20947134_SNP [dm6]	G	A	5.193e^-4	1	DOWNSTREAM Act57B INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15858380	2R_15858380_INS [dm3] 2R_19970875_INS [dm6]	A	AACCCAACCCAA...	5.194e^-4	1	INTERGENIC
3R	23279052	3R_23279052_INS [dm3] 3R_27453330_INS [dm6]	G	GCTGTTG	5.197e^-4	1	INTERGENIC
X	15406383	X_15406383_SNP [dm3] X_15512350_SNP [dm6]	G	A	5.197e^-4	1	UTR_3_PRIME Ac13E
3L	9037344	3L_9037344_SNP [dm3] 3L_9044244_SNP [dm6]	A	G	5.199e^-4	1	INTRON Doc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16824750	2R_16824750_SNP [dm3] 2R_20937245_SNP [dm6]	C	T	5.213e^-4	1	DOWNSTREAM Rx INTERGENIC
3R	21213291	3R_21213291_SNP [dm3] 3R_25387569_SNP [dm6]	C	T	5.234e^-4	1	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12115879	2R_12115879_SNP [dm3] 2R_16228374_SNP [dm6]	T	A	5.239e^-4	1	INTRON CG15706 & 1 other	TF binding site mE1_TFBS_chinmo
3L	12432480	3L_12432480_SNP [dm3] 3L_12439380_SNP [dm6]	C	A	5.250e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16320612	2L_16320612_SNP [dm3] 2L_16320612_SNP [dm6]	C	A	5.258e^-4	1	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1938229	3L_1938229_SNP [dm3] 3L_1938229_SNP [dm6]	C	T	5.258e^-4	1	INTRON CG5687
2L	20043599	2L_20043599_SNP [dm3] 2L_20043599_SNP [dm6]	A	T	5.260e^-4	1	INTRON sNPF
2L	3868486	2L_3868486_SNP [dm3] 2L_3868486_SNP [dm6]	C	T	5.267e^-4	1	SYNONYMOUS_CODING Cep97 DOWNSTREAM CG3964	TF binding site BDTNP1_TFBS_dl
2L	3328426	2L_3328426_SNP [dm3] 2L_3328426_SNP [dm6]	T	G	5.275e^-4	1	STOP_LOST CG33282
2L	10312522	2L_10312522_SNP [dm3] 2L_10312522_SNP [dm6]	G	A	5.284e^-4	1	SYNONYMOUS_CODING CG5384 UPSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2799802	3L_2799802_DEL [dm3] 3L_2799802_DEL [dm6]	TT	T	5.286e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2R	16327013	2R_16327013_SNP [dm3] 2R_20439508_SNP [dm6]	A	G	5.299e^-4	1	INTRON CG12484
X	13741745	X_13741745_DEL [dm3] X_13847712_DEL [dm6]	CTCC	C	5.299e^-4	1	UTR_3_PRIME mamo
X	19299442	X_19299442_SNP [dm3] X_19405409_SNP [dm6]	A	G	5.309e^-4	1	INTRON kek5
3L	5327071	3L_5327071_SNP [dm3] 3L_5333971_SNP [dm6]	T	A	5.314e^-4	1	UPSTREAM CR45742 INTERGENIC
2R	10197544	2R_10197544_SNP [dm3] 2R_14310039_SNP [dm6]	G	T	5.331e^-4	1	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	8647334	3R_8647334_SNP [dm3] 3R_12821612_SNP [dm6]	C	A	5.332e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12632430	3R_12632430_SNP [dm3] 3R_16806708_SNP [dm6]	C	T	5.334e^-4	1	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
2R	19839243	2R_19839243_SNP [dm3] 2R_23951720_SNP [dm6]	C	G	5.341e^-4	1	SYNONYMOUS_CODING fzr2 DOWNSTREAM CG3803 INTRON CG2970	TF binding site mE1_TFBS_chinmo
3R	22907018	3R_22907018_SNP [dm3] 3R_27081296_SNP [dm6]	A	C	5.351e^-4	1	INTRON CG14257
X	9076434	X_9076434_SNP [dm3] X_9182401_SNP [dm6]	C	A	5.354e^-4	1	UTR_3_PRIME mei-P26
3R	20642318	3R_20642318_SNP [dm3] 3R_24816596_SNP [dm6]	C	T	5.372e^-4	1	SYNONYMOUS_CODING CG5808 UPSTREAM Saf-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2R	8770888	2R_8770888_SNP [dm3] 2R_12883383_SNP [dm6]	A	G	5.373e^-4	1	UPSTREAM CR45141 DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	10785309	3R_10785309_SNP [dm3] 3R_14959587_SNP [dm6]	T	G	5.378e^-4	1	INTERGENIC
2R	18155812	2R_18155812_SNP [dm3] 2R_22268307_SNP [dm6]	G	A	5.384e^-4	1	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20170016	2R_20170016_SNP [dm3] 2R_24282493_SNP [dm6]	G	A	5.385e^-4	1	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	8770912	2R_8770912_SNP [dm3] 2R_12883407_SNP [dm6]	G	C	5.388e^-4	1	UPSTREAM CR45141 DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5766438	2L_5766438_SNP [dm3] 2L_5766438_SNP [dm6]	T	C	5.388e^-4	1	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
2L	5766458	2L_5766458_SNP [dm3] 2L_5766458_SNP [dm6]	G	A	5.388e^-4	1	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
X	4333776	X_4333776_SNP [dm3] X_4439743_SNP [dm6]	A	G	5.390e^-4	1	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	12756536	2L_12756536_SNP [dm3] 2L_12756536_SNP [dm6]	C	T	5.394e^-4	1	INTERGENIC
3L	5513174	3L_5513174_SNP [dm3] 3L_5520074_SNP [dm6]	T	C	5.397e^-4	1	INTRON Lkr
2L	11873220	2L_11873220_SNP [dm3] 2L_11873220_SNP [dm6]	C	G	5.412e^-4	1	INTRON Pde1c
3L	8711775	3L_8711775_SNP [dm3] 3L_8718675_SNP [dm6]	A	T	5.416e^-4	1	DOWNSTREAM SrpRbeta INTERGENIC
3L	7722633	3L_7722633_SNP [dm3] 3L_7729533_SNP [dm6]	G	A	5.418e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	21590062	3R_21590062_DEL [dm3] 3R_25764340_DEL [dm6]	GCTGG	G	5.424e^-4	1	INTERGENIC
2L	14596708	2L_14596708_SNP [dm3] 2L_14596708_SNP [dm6]	C	T	5.425e^-4	1	INTERGENIC
X	18230085	X_18230085_SNP [dm3] X_18336052_SNP [dm6]	G	T	5.428e^-4	1	INTRON CG6123
2R	2672580	2R_2672580_SNP [dm3] 2R_6785075_SNP [dm6]	A	C	5.432e^-4	1	INTRON Epac	TF binding site mE1_TFBS_chinmo
3L	13959501	3L_13959501_SNP [dm3] 3L_13966401_SNP [dm6]	A	C	5.435e^-4	1	UTR_5_PRIME Nxf3 INTRON ssp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20087497	2L_20087497_SNP [dm3] 2L_20087497_SNP [dm6]	T	C	5.448e^-4	1	INTRON neb	TF binding site mE1_TFBS_cad
2L	5033736	2L_5033736_SNP [dm3] 2L_5033736_SNP [dm6]	A	C	5.483e^-4	1	SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16335108	2L_16335108_SNP [dm3] 2L_16335108_SNP [dm6]	A	C	5.499e^-4	1	NON_SYNONYMOUS_CODING CG31817
X	22367955	X_22367955_SNP [dm3] X_22966119_SNP [dm6]	C	A	5.507e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	13385144	2R_13385144_SNP [dm3] 2R_17497639_SNP [dm6]	T	C	5.511e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7916745	2L_7916745_SNP [dm3] 2L_7916745_SNP [dm6]	A	G	5.511e^-4	1	INTRON Snoo
X	18914180	X_18914180_SNP [dm3] X_19020147_SNP [dm6]	G	T	5.513e^-4	1	INTRON CG43759
X	8184796	X_8184796_SNP [dm3] X_8290763_SNP [dm6]	A	T	5.554e^-4	1	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5725673	X_5725673_SNP [dm3] X_5831640_SNP [dm6]	G	A	5.571e^-4	1	UPSTREAM tRNA:CR32761:Psi DOWNSTREAM CR43264 INTRON CG15765
2R	8919412	2R_8919412_SNP [dm3] 2R_13031907_SNP [dm6]	C	T	5.574e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8446796	2L_8446796_SNP [dm3] 2L_8446796_SNP [dm6]	T	C	5.580e^-4	1	SYNONYMOUS_CODING U26 UTR_3_PRIME U26 DOWNSTREAM CG31897	TF binding site mE1_TFBS_inv
3L	6465020	3L_6465020_SNP [dm3] 3L_6471920_SNP [dm6]	A	C	5.583e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2R	16342518	2R_16342518_SNP [dm3] 2R_20455013_SNP [dm6]	T	C	5.588e^-4	1	INTRON CG12484
3R	20640996	3R_20640996_SNP [dm3] 3R_24815274_SNP [dm6]	G	T	5.596e^-4	1	DOWNSTREAM CG34150 INTRON CG5808	TF binding site mE1_TFBS_cad
3R	16687899	3R_16687899_SNP [dm3] 3R_20862177_SNP [dm6]	T	A	5.600e^-4	1	SPLICE_SITE_REGION CG3822 SYNONYMOUS_CODING CG3822
3L	19372162	3L_19372162_SNP [dm3] 3L_19379062_SNP [dm6]	C	T	5.608e^-4	1	INTRON CG32206
3L	20943463	3L_20943463_SNP [dm3] 3L_20950363_SNP [dm6]	T	C	5.624e^-4	1	UPSTREAM fng EXON CR45243	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14896398	3R_14896398_SNP [dm3] 3R_19070676_SNP [dm6]	C	T	5.627e^-4	1	INTRON cdi
3L	10900246	3L_10900246_SNP [dm3] 3L_10907146_SNP [dm6]	C	T	5.637e^-4	1	INTERGENIC
3L	1170960	3L_1170960_SNP [dm3] 3L_1170960_SNP [dm6]	G	A	5.638e^-4	1	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	16688195	2R_16688195_SNP [dm3] 2R_20800690_SNP [dm6]	G	T	5.639e^-4	1	INTERGENIC
3L	7715073	3L_7715073_SNP [dm3] 3L_7721973_SNP [dm6]	T	C	5.639e^-4	1	SYNONYMOUS_CODING CG7457 DOWNSTREAM CG12262 INTRON CG32373
3L	2655581	3L_2655581_DEL [dm3] 3L_2655581_DEL [dm6]	CTAAGTTATTCTTTA...	T	5.674e^-4	1	UTR_3_PRIME Fife DOWNSTREAM Snup & 1 other
3L	5462985	3L_5462985_SNP [dm3] 3L_5469885_SNP [dm6]	G	T	5.677e^-4	1	INTERGENIC
2L	13162372	2L_13162372_DEL [dm3] 2L_13162372_DEL [dm6]	ATA	T	5.678e^-4	1	DOWNSTREAM DnaJ-H INTRON CG5204	TF binding site mE1_TFBS_cad
2L	2702203	2L_2702203_SNP [dm3] 2L_2702203_SNP [dm6]	G	A	5.682e^-4	1	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2R	6998236	2R_6998236_INS [dm3] 2R_11110731_INS [dm6]	TTCCC	ATATAA	5.682e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10674774	3L_10674774_SNP [dm3] 3L_10681674_SNP [dm6]	A	T	5.695e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	6789199	2R_6789199_SNP [dm3] 2R_10901694_SNP [dm6]	T	G	5.700e^-4	1	INTERGENIC
2R	6786080	2R_6786080_SNP [dm3] 2R_10898575_SNP [dm6]	A	G	5.704e^-4	1	SYNONYMOUS_CODING Rpb5 UPSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20943460	3L_20943460_SNP [dm3] 3L_20950360_SNP [dm6]	C	G	5.713e^-4	1	UPSTREAM fng EXON CR45243	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18865266	2R_18865266_SNP [dm3] 2R_22977743_SNP [dm6]	G	T	5.720e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13751405	2L_13751405_SNP [dm3] 2L_13751405_SNP [dm6]	T	C	5.748e^-4	1	INTRON CR44846 & 1 other
2L	16529336	2L_16529336_SNP [dm3] 2L_16529336_SNP [dm6]	A	G	5.753e^-4	1	UPSTREAM mir-4943 & 1 other INTRON CG5953
2L	8262142	2L_8262142_SNP [dm3] 2L_8262142_SNP [dm6]	T	C	5.766e^-4	1	SYNONYMOUS_CODING Btk29A
2R	6757453	2R_6757453_SNP [dm3] 2R_10869948_SNP [dm6]	C	T	5.777e^-4	1	INTRON CG30015
X	12955089	X_12955089_SNP [dm3] X_13061056_SNP [dm6]	C	A	5.778e^-4	1	INTRON rad
X	9836417	X_9836417_INS [dm3] X_9942384_INS [dm6]	C	CCGTATGTATTTC...	5.790e^-4	1	INTERGENIC
2R	8187780	2R_8187780_SNP [dm3] 2R_12300275_SNP [dm6]	T	C	5.798e^-4	1	NON_SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14529239	2R_14529239_SNP [dm3] 2R_18641734_SNP [dm6]	A	C	5.806e^-4	1	SYNONYMOUS_CODING SP2637 DOWNSTREAM CheA56a	TF binding site mE1_TFBS_cad
2L	12078160	2L_12078160_SNP [dm3] 2L_12078160_SNP [dm6]	T	C	5.811e^-4	1	DOWNSTREAM CG14947 INTERGENIC	regulatory region REDfly_CRMs
3L	10671818	3L_10671818_SNP [dm3] 3L_10678718_SNP [dm6]	G	C	5.812e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17477591	3L_17477591_SNP [dm3] 3L_17484491_SNP [dm6]	G	A	5.814e^-4	1	INTRON CG6333
2L	5766437	2L_5766437_SNP [dm3] 2L_5766437_SNP [dm6]	C	T	5.815e^-4	1	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
X	12172111	X_12172111_SNP [dm3] X_12278078_SNP [dm6]	C	T	5.823e^-4	1	INTRON Ten-a
2R	14890666	2R_14890666_SNP [dm3] 2R_19003161_SNP [dm6]	T	A	5.883e^-4	1	DOWNSTREAM tn INTRON tn
3R	22349136	3R_22349136_SNP [dm3] 3R_26523414_SNP [dm6]	T	C	5.898e^-4	1	INTRON plum
2R	11811526	2R_11811526_DEL [dm3] 2R_15924021_DEL [dm6]	AA	A	5.901e^-4	1	INTRON bdg	TF binding site mE1_TFBS_cad
2L	5672203	2L_5672203_SNP [dm3] 2L_5672203_SNP [dm6]	C	T	5.914e^-4	1	INTERGENIC
3R	17685817	3R_17685817_SNP [dm3] 3R_21860095_SNP [dm6]	G	A	5.915e^-4	1	DOWNSTREAM CR45644 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	3642352	X_3642352_SNP [dm3] X_3748319_SNP [dm6]	A	G	5.917e^-4	1	UPSTREAM tlk INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12629529	3R_12629529_SNP [dm3] 3R_16803807_SNP [dm6]	A	T	5.922e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8771327	2R_8771327_SNP [dm3] 2R_12883822_SNP [dm6]	T	C	5.931e^-4	1	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
2R	13302159	2R_13302159_DEL [dm3] 2R_17414654_DEL [dm6]	GTTG	G	5.945e^-4	1	CODON_DELETION cnk DOWNSTREAM Prosalpha5	TF binding site mE1_TFBS_chinmo
2R	6753067	2R_6753067_SNP [dm3] 2R_10865562_SNP [dm6]	T	A	5.948e^-4	1	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15629217	3R_15629217_INS [dm3] 3R_19803495_INS [dm6]	G	GA	5.949e^-4	1	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	10668170	3L_10668170_SNP [dm3] 3L_10675070_SNP [dm6]	T	A	5.957e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10668195	3L_10668195_SNP [dm3] 3L_10675095_SNP [dm6]	T	C	5.957e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8772434	2R_8772434_SNP [dm3] 2R_12884929_SNP [dm6]	C	T	5.957e^-4	1	START_GAINED vg UTR_5_PRIME vg	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20917829	3L_20917829_SNP [dm3] 3L_20924729_SNP [dm6]	A	C	5.962e^-4	1	INTERGENIC
3R	5378286	3R_5378286_SNP [dm3] 3R_9552564_SNP [dm6]	T	A	5.983e^-4	1	UPSTREAM CR42549 & 1 other INTRON RnpS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	8766953	2R_8766953_SNP [dm3] 2R_12879448_SNP [dm6]	C	G	5.989e^-4	1	SPLICE_SITE_REGION Nmda1 UTR_5_PRIME Nmda1 UPSTREAM Nmda1 & 1 other INTRON Aats-asp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5127985	3R_5127985_SNP [dm3] 3R_9302263_SNP [dm6]	C	A	5.991e^-4	1	INTRON CG8861
2L	448655	2L_448655_SNP [dm3] 2L_448655_SNP [dm6]	C	T	6.007e^-4	1	UTR_3_PRIME ex & 1 other DOWNSTREAM crq
3R	11013449	3R_11013449_SNP [dm3] 3R_15187727_SNP [dm6]	C	G	6.010e^-4	1	SYNONYMOUS_CODING Gyc88E
3L	12682391	3L_12682391_SNP [dm3] 3L_12689291_SNP [dm6]	A	C	6.017e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17582162	3L_17582162_SNP [dm3] 3L_17589062_SNP [dm6]	A	T	6.019e^-4	1	INTRON Eip74EF
2R	13702478	2R_13702478_SNP [dm3] 2R_17814973_SNP [dm6]	A	C	6.026e^-4	1	INTRON grh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9076433	X_9076433_SNP [dm3] X_9182400_SNP [dm6]	T	C	6.027e^-4	1	UTR_3_PRIME mei-P26
2R	11214855	2R_11214855_DEL [dm3] 2R_15327350_DEL [dm6]	AA	A	6.029e^-4	1	UTR_3_PRIME CG8160 UPSTREAM CG8157
2L	3284970	2L_3284970_SNP [dm3] 2L_3284970_SNP [dm6]	A	G	6.030e^-4	1	INTERGENIC
3R	11441262	3R_11441262_DEL [dm3] 3R_15615540_DEL [dm6]	CTG	GA	6.038e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	22306177	3R_22306177_SNP [dm3] 3R_26480455_SNP [dm6]	C	G	6.043e^-4	1	INTRON plum
3R	14556170	3R_14556170_SNP [dm3] 3R_18730448_SNP [dm6]	C	A	6.046e^-4	1	SYNONYMOUS_CODING Cha
3L	516137	3L_516137_SNP [dm3] 3L_516137_SNP [dm6]	A	G	6.051e^-4	1	INTRON klar
3L	2542715	3L_2542715_SNP [dm3] 3L_2542715_SNP [dm6]	G	A	6.052e^-4	1	INTRON Spn	TF binding site mE1_TFBS_cad
2L	7398962	2L_7398962_DEL [dm3] 2L_7398962_DEL [dm6]	TGC	T	6.055e^-4	1	UPSTREAM CR44079 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	919982	2R_919982_SNP [dm3] 2R_5032477_SNP [dm6]	C	T	6.058e^-4	1	EXON CR44105
2L	2812216	2L_2812216_SNP [dm3] 2L_2812216_SNP [dm6]	G	C	6.059e^-4	1	UTR_3_PRIME daw UPSTREAM CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1
2L	2812173	2L_2812173_SNP [dm3] 2L_2812173_SNP [dm6]	G	A	6.083e^-4	1	UTR_3_PRIME daw UPSTREAM CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1
2L	12075362	2L_12075362_SNP [dm3] 2L_12075362_SNP [dm6]	T	C	6.089e^-4	1	UPSTREAM CG14947 INTERGENIC
2R	10210543	2R_10210543_SNP [dm3] 2R_14323038_SNP [dm6]	A	G	6.098e^-4	1	INTRON Shroom
3R	12637242	3R_12637242_SNP [dm3] 3R_16811520_SNP [dm6]	A	T	6.104e^-4	1	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14897073	3L_14897073_SNP [dm3] 3L_14903973_SNP [dm6]	C	T	6.110e^-4	1	UTR_5_PRIME DCX-EMAP
3R	8608590	3R_8608590_SNP [dm3] 3R_12782868_SNP [dm6]	A	T	6.119e^-4	1	INTRON beat-Vc
2R	6492065	2R_6492065_SNP [dm3] 2R_10604560_SNP [dm6]	A	T	6.127e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	13237936	2L_13237936_DEL [dm3] 2L_13237936_DEL [dm6]	TTG	T	6.128e^-4	1	INTRON CG5867
X	20467239	X_20467239_SNP [dm3] X_20596212_SNP [dm6]	A	C	6.131e^-4	1	INTRON RunxA
2L	11970007	2L_11970007_SNP [dm3] 2L_11970007_SNP [dm6]	A	T	6.141e^-4	1	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20943287	3L_20943287_SNP [dm3] 3L_20950187_SNP [dm6]	C	T	6.153e^-4	1	UPSTREAM fng DOWNSTREAM CR45243 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5672204	2L_5672204_INS [dm3] 2L_5672204_INS [dm6]	A	AAA	6.156e^-4	1	INTERGENIC
3R	23416042	3R_23416042_SNP [dm3] 3R_27590320_SNP [dm6]	A	G	6.185e^-4	1	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5206192	3R_5206192_SNP [dm3] 3R_9380470_SNP [dm6]	C	T	6.210e^-4	1	INTRON FER	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3643817	X_3643817_SNP [dm3] X_3749784_SNP [dm6]	C	A	6.212e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8117784	2R_8117784_SNP [dm3] 2R_12230279_SNP [dm6]	A	G	6.216e^-4	1	UPSTREAM CG8854 INTERGENIC
2R	6231225	2R_6231225_SNP [dm3] 2R_10343720_SNP [dm6]	G	A	6.223e^-4	1	INTRON CG42732
2L	4118327	2L_4118327_SNP [dm3] 2L_4118327_SNP [dm6]	A	C	6.228e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3327989	2L_3327989_SNP [dm3] 2L_3327989_SNP [dm6]	C	T	6.265e^-4	1	SYNONYMOUS_CODING CG33282
2R	16922140	2R_16922140_SNP [dm3] 2R_21034635_SNP [dm6]	C	G	6.267e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9855801	3R_9855801_SNP [dm3] 3R_14030079_SNP [dm6]	C	T	6.271e^-4	1	INTRON rdx & 1 other	TF binding site BDTNP1_TFBS_dl
2R	19845002	2R_19845002_SNP [dm3] 2R_23957479_SNP [dm6]	G	T	6.284e^-4	1	UPSTREAM alpha-catenin-related & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	474824	2L_474824_SNP [dm3] 2L_474824_SNP [dm6]	T	A	6.291e^-4	1	INTRON CG4297 & 1 other	TF binding site mE1_TFBS_cad
3L	3585316	3L_3585316_SNP [dm3] 3L_3585316_SNP [dm6]	T	A	6.292e^-4	1	INTRON Eip63E
3L	1171098	3L_1171098_SNP [dm3] 3L_1171098_SNP [dm6]	G	T	6.294e^-4	1	INTRON bab2	regulatory region REDfly_CRMs
3R	5377426	3R_5377426_SNP [dm3] 3R_9551704_SNP [dm6]	C	A	6.295e^-4	1	UPSTREAM RnpS1 & 2 others INTRON mura & 1 other EXON CR42549	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16707138	2R_16707138_SNP [dm3] 2R_20819633_SNP [dm6]	G	A	6.300e^-4	1	INTERGENIC
X	15337759	X_15337759_SNP [dm3] X_15443726_SNP [dm6]	A	G	6.305e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2940324	3L_2940324_SNP [dm3] 3L_2940324_SNP [dm6]	A	T	6.311e^-4	1	INTRON Shab
2R	6998233	2R_6998233_SNP [dm3] 2R_11110728_SNP [dm6]	G	A	6.315e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7720664	2L_7720664_SNP [dm3] 2L_7720664_SNP [dm6]	G	A	6.316e^-4	1	NON_SYNONYMOUS_CODING CG13794
3L	8569278	3L_8569278_SNP [dm3] 3L_8576178_SNP [dm6]	A	G	6.321e^-4	1	UPSTREAM CG43078 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	22909137	3L_22909137_SNP [dm3] 3L_22916037_SNP [dm6]	A	G	6.327e^-4	1	INTRON CG12768	transposable element FlyBase
2L	3284621	2L_3284621_SNP [dm3] 2L_3284621_SNP [dm6]	G	T	6.332e^-4	1	INTERGENIC
2L	13391632	2L_13391632_SNP [dm3] 2L_13391632_SNP [dm6]	G	A	6.333e^-4	1	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2459093	3L_2459093_SNP [dm3] 3L_2459093_SNP [dm6]	C	T	6.344e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	1005606	3L_1005606_SNP [dm3] 3L_1005606_SNP [dm6]	G	T	6.345e^-4	1	INTRON trio
3L	2529150	3L_2529150_SNP [dm3] 3L_2529150_SNP [dm6]	A	C	6.345e^-4	1	INTRON Spn
2L	1724765	2L_1724765_SNP [dm3] 2L_1724765_SNP [dm6]	A	T	6.354e^-4	1	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	4333779	X_4333779_SNP [dm3] X_4439746_SNP [dm6]	A	T	6.360e^-4	1	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	6583644	2L_6583644_SNP [dm3] 2L_6583644_SNP [dm6]	C	G	6.371e^-4	1	INTRON CG11319
2L	1451017	2L_1451017_SNP [dm3] 2L_1451017_SNP [dm6]	C	T	6.373e^-4	1	INTERGENIC
2R	19530028	2R_19530028_SNP [dm3] 2R_23642505_SNP [dm6]	G	A	6.378e^-4	1	SYNONYMOUS_CODING retn INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	8142565	3L_8142565_SNP [dm3] 3L_8149465_SNP [dm6]	T	C	6.383e^-4	1	INTRON CG13676
2R	1631017	2R_1631017_SNP [dm3] 2R_5743512_SNP [dm6]	G	T	6.389e^-4	1	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	14538511	2R_14538511_SNP [dm3] 2R_18651006_SNP [dm6]	G	T	6.394e^-4	1	INTRON SP2637
2L	3528633	2L_3528633_SNP [dm3] 2L_3528633_SNP [dm6]	A	G	6.397e^-4	1	SYNONYMOUS_CODING Spindly
2L	16005491	2L_16005491_SNP [dm3] 2L_16005491_SNP [dm6]	T	C	6.402e^-4	1	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3L	4348329	3L_4348329_SNP [dm3] 3L_4348329_SNP [dm6]	A	G	6.403e^-4	1	DOWNSTREAM CR45156 INTRON Cip4
2L	12379193	2L_12379193_SNP [dm3] 2L_12379193_SNP [dm6]	G	A	6.407e^-4	1	INTRON bru-2
X	16147886	X_16147886_SNP [dm3] X_16253853_SNP [dm6]	A	T	6.416e^-4	1	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	6109409	X_6109409_SNP [dm3] X_6215376_SNP [dm6]	T	G	6.423e^-4	1	INTERGENIC
3L	1936991	3L_1936991_DEL [dm3] 3L_1936991_DEL [dm6]	AACAA	A	6.431e^-4	1	INTRON CG5687
3L	2529135	3L_2529135_SNP [dm3] 3L_2529135_SNP [dm6]	G	A	6.444e^-4	1	INTRON Spn
2R	11820985	2R_11820985_SNP [dm3] 2R_15933480_SNP [dm6]	G	A	6.447e^-4	1	SYNONYMOUS_CODING Iap2	TF binding site mE1_TFBS_chinmo
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	6.448e^-4	1	DOWNSTREAM CR44315 INTERGENIC
3L	15034633	3L_15034633_SNP [dm3] 3L_15041533_SNP [dm6]	G	A	6.448e^-4	1	DOWNSTREAM Rpn12R INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2872589	2L_2872589_SNP [dm3] 2L_2872589_SNP [dm6]	T	A	6.450e^-4	1	INTRON CG31694	TF binding site BDTNP1_TFBS_twi
2L	4121997	2L_4121997_SNP [dm3] 2L_4121997_SNP [dm6]	G	C	6.452e^-4	1	DOWNSTREAM Sr-CIII INTRON Sr-CI
X	3646161	X_3646161_DEL [dm3] X_3752128_DEL [dm6]	ACA	A	6.465e^-4	1	INTRON tlk
3L	10877077	3L_10877077_SNP [dm3] 3L_10883977_SNP [dm6]	A	T	6.465e^-4	1	DOWNSTREAM CG6404 & 1 other INTERGENIC
2L	15481896	2L_15481896_SNP [dm3] 2L_15481896_SNP [dm6]	G	A	6.469e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16250476	3R_16250476_SNP [dm3] 3R_20424754_SNP [dm6]	C	T	6.469e^-4	1	INTRON Gfrl
3L	4745771	3L_4745771_SNP [dm3] 3L_4745771_SNP [dm6]	A	T	6.470e^-4	1	DOWNSTREAM CR43882 INTRON RhoGEF64C
2R	1387657	2R_1387657_SNP [dm3] 2R_5500152_SNP [dm6]	G	A	6.470e^-4	1	INTRON CG30438
2R	1387659	2R_1387659_SNP [dm3] 2R_5500154_SNP [dm6]	A	T	6.470e^-4	1	INTRON CG30438
2L	2846270	2L_2846270_SNP [dm3] 2L_2846270_SNP [dm6]	A	T	6.470e^-4	1	SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
X	19680747	X_19680747_SNP [dm3] X_19786714_SNP [dm6]	T	G	6.471e^-4	1	DOWNSTREAM CR44885 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2116193	3L_2116193_SNP [dm3] 3L_2116193_SNP [dm6]	C	A	6.480e^-4	1	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
2R	20724986	2R_20724986_SNP [dm3] 2R_24837463_SNP [dm6]	C	A	6.484e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9729909	2L_9729909_SNP [dm3] 2L_9729909_SNP [dm6]	G	A	6.491e^-4	1	UPSTREAM CG13116 INTRON Nckx30C
2L	14406933	2L_14406933_SNP [dm3] 2L_14406933_SNP [dm6]	A	G	6.493e^-4	1	INTRON elB
2R	13541745	2R_13541745_SNP [dm3] 2R_17654240_SNP [dm6]	G	A	6.501e^-4	1	SYNONYMOUS_CODING CCHa1-R
2L	13119633	2L_13119633_SNP [dm3] 2L_13119633_SNP [dm6]	A	C	6.520e^-4	1	UPSTREAM CR44198 INTRON CG43050	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16712786	2R_16712786_SNP [dm3] 2R_20825281_SNP [dm6]	G	C	6.522e^-4	1	INTRON insc	TF binding site mE1_TFBS_cad
2R	6492072	2R_6492072_SNP [dm3] 2R_10604567_SNP [dm6]	T	G	6.524e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	8183627	3R_8183627_SNP [dm3] 3R_12357905_SNP [dm6]	C	T	6.555e^-4	1	INTERGENIC
2R	12100834	2R_12100834_SNP [dm3] 2R_16213329_SNP [dm6]	G	A	6.557e^-4	1	INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8507635	2R_8507635_SNP [dm3] 2R_12620130_SNP [dm6]	A	T	6.569e^-4	1	UTR_3_PRIME Galphaq DOWNSTREAM Galphaq & 1 other	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	13514586	3R_13514586_SNP [dm3] 3R_17688864_SNP [dm6]	C	A	6.585e^-4	1	UTR_3_PRIME osa
2R	9486523	2R_9486523_SNP [dm3] 2R_13599018_SNP [dm6]	C	T	6.610e^-4	1	DOWNSTREAM S-Lap5 INTERGENIC
3R	12630459	3R_12630459_SNP [dm3] 3R_16804737_SNP [dm6]	C	T	6.618e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26170999	3R_26170999_SNP [dm3] 3R_30345277_SNP [dm6]	A	T	6.621e^-4	1	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5426587	X_5426587_INS [dm3] X_5532554_INS [dm6]	T	TGGAAAAAT	6.626e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
X	4333777	X_4333777_SNP [dm3] X_4439744_SNP [dm6]	G	A	6.630e^-4	1	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	2757738	2L_2757738_DEL [dm3] 2L_2757738_DEL [dm6]	AT	A	6.635e^-4	1	UTR_3_PRIME Bacc DOWNSTREAM CR44772 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	20234999	X_20234999_SNP [dm3] X_20363972_SNP [dm6]	G	T	6.639e^-4	1	INTERGENIC
3R	6669599	3R_6669599_SNP [dm3] 3R_10843877_SNP [dm6]	G	C	6.645e^-4	1	NON_SYNONYMOUS_CODING Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	8730846	3R_8730846_SNP [dm3] 3R_12905124_SNP [dm6]	C	T	6.659e^-4	1	INTERGENIC
X	9076436	X_9076436_DEL [dm3] X_9182403_DEL [dm6]	ACATT	A	6.663e^-4	1	UTR_3_PRIME mei-P26
2L	12353527	2L_12353527_SNP [dm3] 2L_12353527_SNP [dm6]	G	A	6.673e^-4	1	INTRON bru-2
2L	3332914	2L_3332914_SNP [dm3] 2L_3332914_SNP [dm6]	C	A	6.680e^-4	1	NON_SYNONYMOUS_CODING CG15408 DOWNSTREAM CG3285	TF binding site mE1_TFBS_cad
3L	22001957	3L_22001957_SNP [dm3] 3L_22008857_SNP [dm6]	A	G	6.683e^-4	1	INTERGENIC
2L	16331800	2L_16331800_SNP [dm3] 2L_16331800_SNP [dm6]	G	T	6.688e^-4	1	NON_SYNONYMOUS_CODING CG31817
2L	16332178	2L_16332178_SNP [dm3] 2L_16332178_SNP [dm6]	C	G	6.690e^-4	1	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
2R	13580329	2R_13580329_SNP [dm3] 2R_17692824_SNP [dm6]	C	G	6.709e^-4	1	INTRON swi2	TF binding site mE1_TFBS_cad
2L	14127272	2L_14127272_SNP [dm3] 2L_14127272_SNP [dm6]	T	C	6.714e^-4	1	INTERGENIC
3R	14153606	3R_14153606_SNP [dm3] 3R_18327884_SNP [dm6]	G	C	6.718e^-4	1	INTRON CG31235
2L	4856887	2L_4856887_SNP [dm3] 2L_4856887_SNP [dm6]	G	T	6.722e^-4	1	INTRON pog
2R	4787287	2R_4787287_SNP [dm3] 2R_8899782_SNP [dm6]	C	T	6.730e^-4	1	SYNONYMOUS_CODING ana2 UPSTREAM CG13751 DOWNSTREAM Sec31 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6231237	2R_6231237_SNP [dm3] 2R_10343732_SNP [dm6]	G	T	6.758e^-4	1	INTRON CG42732
2R	4677425	2R_4677425_SNP [dm3] 2R_8789920_SNP [dm6]	G	T	6.760e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7754165	3L_7754165_SNP [dm3] 3L_7761065_SNP [dm6]	T	A	6.761e^-4	1	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
3L	1900528	3L_1900528_SNP [dm3] 3L_1900528_SNP [dm6]	A	G	6.761e^-4	1	UTR_3_PRIME CG1887 INTRON CG1887
3R	9268749	3R_9268749_SNP [dm3] 3R_13443027_SNP [dm6]	T	C	6.763e^-4	1	DOWNSTREAM CR45679 INTERGENIC
3R	23416492	3R_23416492_SNP [dm3] 3R_27590770_SNP [dm6]	C	A	6.765e^-4	1	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11296318	2L_11296318_SNP [dm3] 2L_11296318_SNP [dm6]	T	A	6.768e^-4	1	INTERGENIC
X	20561008	X_20561008_SNP [dm3] X_20689981_SNP [dm6]	A	T	6.768e^-4	1	UPSTREAM run DOWNSTREAM CR45610 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
X	10178448	X_10178448_SNP [dm3] X_10284415_SNP [dm6]	A	G	6.775e^-4	1	INTRON alpha-Man-I
3L	13013993	3L_13013993_SNP [dm3] 3L_13020893_SNP [dm6]	G	T	6.776e^-4	1	INTRON AdenoK
2L	16005485	2L_16005485_MNP [dm3] 2L_16005485_MNP [dm6]	AGA	TTC	6.778e^-4	1	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
X	18474173	X_18474173_SNP [dm3] X_18580140_SNP [dm6]	A	G	6.787e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4325265	2L_4325265_SNP [dm3] 2L_4325265_SNP [dm6]	C	A	6.794e^-4	1	INTRON CG16857
3L	15703593	3L_15703593_SNP [dm3] 3L_15710493_SNP [dm6]	G	A	6.797e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	5512604	2L_5512604_SNP [dm3] 2L_5512604_SNP [dm6]	C	A	6.800e^-4	1	INTERGENIC
X	7900873	X_7900873_SNP [dm3] X_8006840_SNP [dm6]	T	C	6.802e^-4	1	INTRON Tbh	TF binding site mE1_TFBS_inv
2L	16335132	2L_16335132_SNP [dm3] 2L_16335132_SNP [dm6]	A	C	6.816e^-4	1	NON_SYNONYMOUS_CODING CG31817
2L	3261978	2L_3261978_SNP [dm3] 2L_3261978_SNP [dm6]	C	T	6.816e^-4	1	UPSTREAM CR45337 EXON CR45338
2L	17136374	2L_17136374_SNP [dm3] 2L_17136374_SNP [dm6]	G	A	6.819e^-4	1	INTRON beat-IIIa & 1 other
2R	883173	2R_883173_SNP [dm3] 2R_4995668_SNP [dm6]	A	C	6.820e^-4	1	INTRON Ir41a	transposable element FlyBase
3R	8753405	3R_8753405_SNP [dm3] 3R_12927683_SNP [dm6]	T	A	6.823e^-4	1	INTRON beat-Vb
3R	6493412	3R_6493412_SNP [dm3] 3R_10667690_SNP [dm6]	T	C	6.825e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26671766	3R_26671766_SNP [dm3] 3R_30846044_SNP [dm6]	A	C	6.834e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	9131054	X_9131054_SNP [dm3] X_9237021_SNP [dm6]	C	A	6.856e^-4	1	UTR_3_PRIME mxc UPSTREAM mir-4916 & 1 other
2L	14585595	2L_14585595_SNP [dm3] 2L_14585595_SNP [dm6]	G	T	6.864e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	16245150	3R_16245150_DEL [dm3] 3R_20419428_DEL [dm6]	AACTAAAC	A	6.866e^-4	1	INTRON Gfrl
2R	11797455	2R_11797455_SNP [dm3] 2R_15909950_SNP [dm6]	G	T	6.869e^-4	1	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12120666	3L_12120666_SNP [dm3] 3L_12127566_SNP [dm6]	C	T	6.871e^-4	1	UPSTREAM CG34241 & 1 other INTERGENIC
2L	21651977	2L_21651977_SNP [dm3] 2L_21651977_SNP [dm6]	A	T	6.879e^-4	1	INTERGENIC	transposable element FlyBase
3L	10671837	3L_10671837_SNP [dm3] 3L_10678737_SNP [dm6]	T	A	6.879e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

se_StartleRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results