DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.788e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.06275

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.2831	0.07

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3232 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16618250	2L_16618250_SNP [dm3] 2L_16618250_SNP [dm6]	C	G	7.056e^-8	0.132	INTRON CG42389
2L	16618071	2L_16618071_SNP [dm3] 2L_16618071_SNP [dm6]	T	G	2.123e^-7	0.199	INTRON CG42389
2L	16623523	2L_16623523_SNP [dm3] 2L_16623523_SNP [dm6]	G	C	4.384e^-7	0.274	INTRON CG42389
2L	16618129	2L_16618129_SNP [dm3] 2L_16618129_SNP [dm6]	G	T	5.916e^-7	0.277	INTRON CG42389
2L	16621147	2L_16621147_SNP [dm3] 2L_16621147_SNP [dm6]	G	A	9.356e^-7	0.293	INTRON CG42389
3L	18208880	3L_18208880_SNP [dm3] 3L_18215780_SNP [dm6]	A	T	9.362e^-7	0.293	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	8415244	3L_8415244_SNP [dm3] 3L_8422144_SNP [dm6]	G	A	1.292e^-6	0.298	UTR_5_PRIME CG32354	TF binding site BDTNP1_TFBS_dl
2L	9313024	2L_9313024_SNP [dm3] 2L_9313024_SNP [dm6]	T	C	1.381e^-6	0.298	INTERGENIC
2L	16653049	2L_16653049_SNP [dm3] 2L_16653049_SNP [dm6]	A	T	1.942e^-6	0.298	INTRON CG42389
2L	16653044	2L_16653044_SNP [dm3] 2L_16653044_SNP [dm6]	C	T	2.056e^-6	0.298	INTRON CG42389
X	12263837	X_12263837_SNP [dm3] X_12369804_SNP [dm6]	A	C	2.059e^-6	0.298	INTERGENIC
2L	16653071	2L_16653071_SNP [dm3] 2L_16653071_SNP [dm6]	C	T	2.072e^-6	0.298	INTRON CG42389	TF binding site mE1_TFBS_inv
2L	13223733	2L_13223733_SNP [dm3] 2L_13223733_SNP [dm6]	C	T	2.211e^-6	0.298	SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9313378	2L_9313378_DEL [dm3] 2L_9313378_DEL [dm6]	GGTGGCACAG	G	2.226e^-6	0.298	INTERGENIC
2L	16653029	2L_16653029_DEL [dm3] 2L_16653029_DEL [dm6]	CAAGTTAAAGTG...	C	2.537e^-6	0.302	INTRON CG42389
3R	25074153	3R_25074153_SNP [dm3] 3R_29248431_SNP [dm6]	A	G	2.764e^-6	0.302	INTRON SP1029	TF binding site mE1_TFBS_cad
2L	16653000	2L_16653000_SNP [dm3] 2L_16653000_SNP [dm6]	A	C	2.830e^-6	0.302	INTRON CG42389
2L	16609224	2L_16609224_SNP [dm3] 2L_16609224_SNP [dm6]	C	G	2.894e^-6	0.302	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	1015092	2L_1015092_SNP [dm3] 2L_1015092_SNP [dm6]	T	A	3.106e^-6	0.307	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20613158	X_20613158_SNP [dm3] X_20742131_SNP [dm6]	C	T	3.448e^-6	0.311	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	20000931	3L_20000931_SNP [dm3] 3L_20007831_SNP [dm6]	G	T	3.536e^-6	0.311	INTRON kug	TF binding site mE1_TFBS_zfh1
X	8851365	X_8851365_SNP [dm3] X_8957332_SNP [dm6]	C	T	3.649e^-6	0.311	INTRON rdgA
2L	16619531	2L_16619531_SNP [dm3] 2L_16619531_SNP [dm6]	G	A	4.198e^-6	0.326	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6205616	2L_6205616_SNP [dm3] 2L_6205616_SNP [dm6]	C	T	4.318e^-6	0.326	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11739283	2R_11739283_SNP [dm3] 2R_15851778_SNP [dm6]	C	A	4.349e^-6	0.326	INTRON tun	TF binding site BDTNP1_TFBS_dl
X	7055307	X_7055307_SNP [dm3] X_7161274_SNP [dm6]	G	T	4.798e^-6	0.327	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
2L	9313144	2L_9313144_INS [dm3] 2L_9313144_INS [dm6]	A	AA	4.941e^-6	0.327	INTERGENIC
X	7055295	X_7055295_SNP [dm3] X_7161262_SNP [dm6]	G	T	5.039e^-6	0.327	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
X	7055336	X_7055336_SNP [dm3] X_7161303_SNP [dm6]	T	C	5.216e^-6	0.327	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
2L	2187969	2L_2187969_SNP [dm3] 2L_2187969_SNP [dm6]	C	T	5.222e^-6	0.327	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066
2L	9313058	2L_9313058_SNP [dm3] 2L_9313058_SNP [dm6]	C	T	5.763e^-6	0.339	INTERGENIC
2L	9313068	2L_9313068_SNP [dm3] 2L_9313068_SNP [dm6]	G	A	6.177e^-6	0.339	INTERGENIC
3L	22248852	3L_22248852_INS [dm3] 3L_22255752_INS [dm6]	G	GACTTAGTG	6.318e^-6	0.339	INTERGENIC
X	8563364	X_8563364_SNP [dm3] X_8669331_SNP [dm6]	C	T	6.342e^-6	0.339	INTERGENIC
3R	5191461	3R_5191461_SNP [dm3] 3R_9365739_SNP [dm6]	A	T	6.474e^-6	0.339	UPSTREAM CG8129 DOWNSTREAM CG18473 INTRON CG8129
2L	13223739	2L_13223739_SNP [dm3] 2L_13223739_SNP [dm6]	T	C	6.513e^-6	0.339	SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16722727	2L_16722727_SNP [dm3] 2L_16722727_SNP [dm6]	G	A	6.780e^-6	0.344	DOWNSTREAM VhaSFD & 1 other INTERGENIC
2L	19694362	2L_19694362_SNP [dm3] 2L_19694362_SNP [dm6]	A	G	7.153e^-6	0.353	INTRON Lar
2L	9313131	2L_9313131_SNP [dm3] 2L_9313131_SNP [dm6]	T	C	7.795e^-6	0.367	INTERGENIC
2R	17187252	2R_17187252_SNP [dm3] 2R_21299747_SNP [dm6]	T	C	8.195e^-6	0.367	INTRON CG42672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25839171	3R_25839171_SNP [dm3] 3R_30013449_SNP [dm6]	C	G	8.431e^-6	0.367	INTRON CG7920
3L	21076847	3L_21076847_SNP [dm3] 3L_21083747_SNP [dm6]	G	C	8.517e^-6	0.367	INTRON ko
2L	13223814	2L_13223814_SNP [dm3] 2L_13223814_SNP [dm6]	C	T	8.580e^-6	0.367	SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8851359	X_8851359_SNP [dm3] X_8957326_SNP [dm6]	G	A	8.722e^-6	0.367	INTRON rdgA
2L	9313172	2L_9313172_SNP [dm3] 2L_9313172_SNP [dm6]	T	C	8.815e^-6	0.367	INTERGENIC
3L	18208974	3L_18208974_SNP [dm3] 3L_18215874_SNP [dm6]	T	G	9.728e^-6	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13223826	2L_13223826_SNP [dm3] 2L_13223826_SNP [dm6]	T	A	1.002e^-5	0.396	SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12292053	3L_12292053_SNP [dm3] 3L_12298953_SNP [dm6]	A	G	1.039e^-5	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3690310	2L_3690310_SNP [dm3] 2L_3690310_SNP [dm6]	A	G	1.066e^-5	0.396	INTRON CG34340
2R	17053221	2R_17053221_SNP [dm3] 2R_21165716_SNP [dm6]	G	A	1.072e^-5	0.396	SYNONYMOUS_CODING CG4266 INTRON CG4266	TF binding site mE1_TFBS_cad
2L	16653061	2L_16653061_SNP [dm3] 2L_16653061_SNP [dm6]	A	G	1.077e^-5	0.396	INTRON CG42389	TF binding site mE1_TFBS_inv
X	20323322	X_20323322_SNP [dm3] X_20452295_SNP [dm6]	C	A	1.108e^-5	0.4	INTRON CG32506	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5880300	2L_5880300_SNP [dm3] 2L_5880300_SNP [dm6]	A	C	1.141e^-5	0.404	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6205617	2L_6205617_SNP [dm3] 2L_6205617_SNP [dm6]	A	G	1.218e^-5	0.405	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7115745	3L_7115745_SNP [dm3] 3L_7122645_SNP [dm6]	G	A	1.219e^-5	0.405	SYNONYMOUS_CODING form3 DOWNSTREAM msl-3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9313205	2L_9313205_SNP [dm3] 2L_9313205_SNP [dm6]	G	A	1.225e^-5	0.405	INTERGENIC
2R	11739302	2R_11739302_SNP [dm3] 2R_15851797_SNP [dm6]	C	G	1.250e^-5	0.405	INTRON tun	TF binding site BDTNP1_TFBS_dl
2L	9313085	2L_9313085_SNP [dm3] 2L_9313085_SNP [dm6]	G	A	1.289e^-5	0.405	INTERGENIC
2L	9313033	2L_9313033_DEL [dm3] 2L_9313033_DEL [dm6]	TCCATATTGG	T	1.290e^-5	0.405	INTERGENIC
2L	6408877	2L_6408877_SNP [dm3] 2L_6408877_SNP [dm6]	T	G	1.296e^-5	0.405	INTRON CG42368	TF binding site mE1_TFBS_inv
X	8563363	X_8563363_SNP [dm3] X_8669330_SNP [dm6]	G	C	1.350e^-5	0.415	INTERGENIC
3L	16802630	3L_16802630_INS [dm3] 3L_16809530_INS [dm6]	A	AAATC	1.374e^-5	0.416	DOWNSTREAM CG13024 INTRON nudC
3L	5821575	3L_5821575_SNP [dm3] 3L_5828475_SNP [dm6]	T	A	1.416e^-5	0.418	INTRON vn
X	1082683	X_1082683_SNP [dm3] X_1188650_SNP [dm6]	T	C	1.469e^-5	0.418	DOWNSTREAM CG14626 INTERGENIC
2L	1015071	2L_1015071_SNP [dm3] 2L_1015071_SNP [dm6]	G	A	1.477e^-5	0.418	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18208895	3L_18208895_SNP [dm3] 3L_18215795_SNP [dm6]	G	A	1.511e^-5	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	10910144	3L_10910144_SNP [dm3] 3L_10917044_SNP [dm6]	C	T	1.514e^-5	0.418	INTERGENIC
X	8563373	X_8563373_SNP [dm3] X_8669340_SNP [dm6]	C	T	1.522e^-5	0.418	INTERGENIC
2L	9313115	2L_9313115_SNP [dm3] 2L_9313115_SNP [dm6]	A	T	1.537e^-5	0.418	INTERGENIC
X	8851372	X_8851372_SNP [dm3] X_8957339_SNP [dm6]	G	A	1.591e^-5	0.422	INTRON rdgA
2L	16671963	2L_16671963_SNP [dm3] 2L_16671963_SNP [dm6]	A	C	1.599e^-5	0.422	INTRON Trpgamma
2L	16733794	2L_16733794_SNP [dm3] 2L_16733794_SNP [dm6]	G	C	1.644e^-5	0.424	UTR_3_PRIME glu DOWNSTREAM CG17904
3L	3411520	3L_3411520_SNP [dm3] 3L_3411520_SNP [dm6]	A	C	1.654e^-5	0.424	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11739228	2R_11739228_SNP [dm3] 2R_15851723_SNP [dm6]	G	T	1.673e^-5	0.424	INTRON tun	TF binding site BDTNP1_TFBS_dl
3L	3369025	3L_3369025_SNP [dm3] 3L_3369025_SNP [dm6]	C	T	1.694e^-5	0.424	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
3L	18209005	3L_18209005_SNP [dm3] 3L_18215905_SNP [dm6]	T	A	1.718e^-5	0.424	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20031556	X_20031556_SNP [dm3] X_20137523_SNP [dm6]	C	A	1.762e^-5	0.429	SYNONYMOUS_CODING CG15322	TF binding site mE1_TFBS_chinmo
3L	3369183	3L_3369183_SNP [dm3] 3L_3369183_SNP [dm6]	A	G	1.798e^-5	0.432	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
X	7752428	X_7752428_SNP [dm3] X_7858395_SNP [dm6]	A	G	1.858e^-5	0.435	NON_SYNONYMOUS_CODING CG1409
2L	10633501	2L_10633501_SNP [dm3] 2L_10633501_SNP [dm6]	A	G	1.889e^-5	0.435	INTRON CG7329	TF binding site mE1_TFBS_inv
3L	12292847	3L_12292847_SNP [dm3] 3L_12299747_SNP [dm6]	T	C	1.890e^-5	0.435	INTERGENIC
2L	16653003	2L_16653003_SNP [dm3] 2L_16653003_SNP [dm6]	A	T	1.906e^-5	0.435	INTRON CG42389
X	7055305	X_7055305_SNP [dm3] X_7161272_SNP [dm6]	T	A	1.944e^-5	0.435	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
3L	6430144	3L_6430144_SNP [dm3] 3L_6437044_SNP [dm6]	C	T	1.946e^-5	0.435	INTRON CG42747
2L	9313130	2L_9313130_SNP [dm3] 2L_9313130_SNP [dm6]	A	C	1.982e^-5	0.437	INTERGENIC
X	1074157	X_1074157_SNP [dm3] X_1180124_SNP [dm6]	A	G	2.076e^-5	0.446	UPSTREAM CG11379 INTERGENIC
3L	3368951	3L_3368951_SNP [dm3] 3L_3368951_SNP [dm6]	C	T	2.082e^-5	0.446	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
3L	18208973	3L_18208973_SNP [dm3] 3L_18215873_SNP [dm6]	C	T	2.110e^-5	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	548967	2L_548967_INS [dm3] 2L_548967_INS [dm6]	C	CACACACGCCTC...	2.136e^-5	0.446	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	20605080	X_20605080_SNP [dm3] X_20734053_SNP [dm6]	G	T	2.169e^-5	0.446	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9945840	2L_9945840_SNP [dm3] 2L_9945840_SNP [dm6]	T	A	2.196e^-5	0.446	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	538328	2L_538328_SNP [dm3] 2L_538328_SNP [dm6]	C	T	2.206e^-5	0.446	SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7025111	2R_7025111_SNP [dm3] 2R_11137606_SNP [dm6]	T	A	2.238e^-5	0.446	SYNONYMOUS_CODING BBS4
X	18012312	X_18012312_SNP [dm3] X_18118279_SNP [dm6]	A	G	2.251e^-5	0.446	INTERGENIC
3R	23472834	3R_23472834_SNP [dm3] 3R_27647112_SNP [dm6]	T	G	2.315e^-5	0.446	UTR_5_PRIME tau UPSTREAM tau INTRON tau
2L	16722721	2L_16722721_SNP [dm3] 2L_16722721_SNP [dm6]	T	C	2.337e^-5	0.446	DOWNSTREAM VhaSFD & 1 other INTERGENIC
3R	14699982	3R_14699982_SNP [dm3] 3R_18874260_SNP [dm6]	T	C	2.375e^-5	0.446	INTERGENIC
2L	7271315	2L_7271315_SNP [dm3] 2L_7271315_SNP [dm6]	C	G	2.392e^-5	0.446	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	2792688	2R_2792688_SNP [dm3] 2R_6905183_SNP [dm6]	G	A	2.422e^-5	0.446	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2L	2678519	2L_2678519_SNP [dm3] 2L_2678519_SNP [dm6]	G	A	2.471e^-5	0.446	INTRON CG31690
2L	16763376	2L_16763376_SNP [dm3] 2L_16763376_SNP [dm6]	T	A	2.489e^-5	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7115760	3L_7115760_SNP [dm3] 3L_7122660_SNP [dm6]	G	C	2.512e^-5	0.446	SYNONYMOUS_CODING form3 DOWNSTREAM msl-3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18208928	3L_18208928_SNP [dm3] 3L_18215828_SNP [dm6]	T	A	2.517e^-5	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18208996	3L_18208996_SNP [dm3] 3L_18215896_SNP [dm6]	A	T	2.517e^-5	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14779679	3R_14779679_SNP [dm3] 3R_18953957_SNP [dm6]	A	T	2.517e^-5	0.446	INTRON CG42613 & 1 other
X	8851444	X_8851444_SNP [dm3] X_8957411_SNP [dm6]	A	T	2.521e^-5	0.446	INTRON rdgA
2L	17364622	2L_17364622_SNP [dm3] 2L_17364622_SNP [dm6]	T	G	2.647e^-5	0.452	DOWNSTREAM CG31804 INTERGENIC
2L	16807875	2L_16807875_SNP [dm3] 2L_16807875_SNP [dm6]	A	G	2.657e^-5	0.452	INTRON CG13280 & 1 other
X	22363858	X_22363858_SNP [dm3] X_22962022_SNP [dm6]	G	A	2.675e^-5	0.452	SYNONYMOUS_CODING CG40485	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1015059	2L_1015059_SNP [dm3] 2L_1015059_SNP [dm6]	G	A	2.688e^-5	0.452	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26753874	3R_26753874_SNP [dm3] 3R_30928152_SNP [dm6]	T	C	2.740e^-5	0.452	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	25838382	3R_25838382_SNP [dm3] 3R_30012660_SNP [dm6]	C	T	2.741e^-5	0.452	INTRON CG7920
X	11359954	X_11359954_SNP [dm3] X_11465921_SNP [dm6]	T	C	2.764e^-5	0.452	INTRON CG43155
2R	3360483	2R_3360483_SNP [dm3] 2R_7472978_SNP [dm6]	C	A	2.772e^-5	0.452	INTRON Aldh-III	TF binding site BDTNP1_TFBS_dl
X	12731939	X_12731939_SNP [dm3] X_12837906_SNP [dm6]	G	A	2.773e^-5	0.452	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9313088	2L_9313088_SNP [dm3] 2L_9313088_SNP [dm6]	T	C	2.830e^-5	0.458	INTERGENIC
2L	17364636	2L_17364636_MNP [dm3] 2L_17364636_MNP [dm6]	TGA	GAG	2.889e^-5	0.46	DOWNSTREAM CG31804 INTERGENIC
3L	12292800	3L_12292800_SNP [dm3] 3L_12299700_SNP [dm6]	G	T	2.892e^-5	0.46	INTERGENIC
3L	8890233	3L_8890233_SNP [dm3] 3L_8897133_SNP [dm6]	G	T	2.964e^-5	0.462	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3090485	X_3090485_SNP [dm3] X_3196452_SNP [dm6]	A	G	2.992e^-5	0.462	INTRON dnc
3R	25073490	3R_25073490_SNP [dm3] 3R_29247768_SNP [dm6]	A	G	3.024e^-5	0.462	SYNONYMOUS_CODING SP1029	TF binding site mE1_TFBS_cad
X	10392332	X_10392332_SNP [dm3] X_10498299_SNP [dm6]	C	A	3.055e^-5	0.462	SYNONYMOUS_CODING spri	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10910180	3L_10910180_SNP [dm3] 3L_10917080_SNP [dm6]	T	A	3.064e^-5	0.462	INTERGENIC
3L	12292099	3L_12292099_SNP [dm3] 3L_12298999_SNP [dm6]	C	T	3.097e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8276228	3R_8276228_SNP [dm3] 3R_12450506_SNP [dm6]	T	A	3.139e^-5	0.462	INTRON CG18549	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3940440	2L_3940440_SNP [dm3] 2L_3940440_SNP [dm6]	C	A	3.145e^-5	0.462	INTRON fred
2R	2868930	2R_2868930_SNP [dm3] 2R_6981425_SNP [dm6]	C	T	3.176e^-5	0.462	UPSTREAM CR44171 DOWNSTREAM CG30156 INTRON vimar	TF binding site BDTNP1_TFBS_da
3L	1282724	3L_1282724_SNP [dm3] 3L_1282724_SNP [dm6]	A	G	3.225e^-5	0.462	INTRON CG32333
2R	16275189	2R_16275189_SNP [dm3] 2R_20387684_SNP [dm6]	A	G	3.286e^-5	0.462	INTERGENIC
X	1085555	X_1085555_SNP [dm3] X_1191522_SNP [dm6]	T	C	3.290e^-5	0.462	UTR_5_PRIME CG11380
2L	16950368	2L_16950368_SNP [dm3] 2L_16950368_SNP [dm6]	T	G	3.324e^-5	0.462	UPSTREAM CR44393 INTERGENIC
X	8851383	X_8851383_SNP [dm3] X_8957350_SNP [dm6]	C	T	3.359e^-5	0.462	INTRON rdgA
2L	13475398	2L_13475398_SNP [dm3] 2L_13475398_SNP [dm6]	G	A	3.387e^-5	0.462	SYNONYMOUS_CODING CG42784 INTRON CG42784	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	2678262	2L_2678262_SNP [dm3] 2L_2678262_SNP [dm6]	A	T	3.434e^-5	0.462	INTRON CG31690
3R	19509640	3R_19509640_SNP [dm3] 3R_23683918_SNP [dm6]	G	A	3.451e^-5	0.462	UTR_3_PRIME CG16710 UPSTREAM CG18754
3L	9484163	3L_9484163_SNP [dm3] 3L_9491063_SNP [dm6]	G	T	3.455e^-5	0.462	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	11674104	X_11674104_SNP [dm3] X_11780071_SNP [dm6]	A	G	3.503e^-5	0.462	INTERGENIC
2L	11772061	2L_11772061_SNP [dm3] 2L_11772061_SNP [dm6]	T	C	3.508e^-5	0.462	INTERGENIC
3L	9591529	3L_9591529_SNP [dm3] 3L_9598429_SNP [dm6]	A	G	3.537e^-5	0.462	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC
2L	9312959	2L_9312959_SNP [dm3] 2L_9312959_SNP [dm6]	A	G	3.585e^-5	0.462	INTERGENIC
3R	8276238	3R_8276238_INS [dm3] 3R_12450516_INS [dm6]	A	AA	3.587e^-5	0.462	INTRON CG18549	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4262128	2L_4262128_SNP [dm3] 2L_4262128_SNP [dm6]	G	T	3.591e^-5	0.462	INTERGENIC
2L	16652989	2L_16652989_SNP [dm3] 2L_16652989_SNP [dm6]	T	A	3.625e^-5	0.462	INTRON CG42389
2L	4285890	2L_4285890_SNP [dm3] 2L_4285890_SNP [dm6]	G	A	3.660e^-5	0.462	INTRON tutl	TF binding site BDTNP1_TFBS_dl
3L	14460503	3L_14460503_SNP [dm3] 3L_14467403_SNP [dm6]	A	T	3.711e^-5	0.462	INTRON bbg
3L	6096119	3L_6096119_SNP [dm3] 3L_6103019_SNP [dm6]	T	C	3.725e^-5	0.462	INTRON Ets65A
3R	24166686	3R_24166686_SNP [dm3] 3R_28340964_SNP [dm6]	A	G	3.762e^-5	0.462	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9484144	3L_9484144_SNP [dm3] 3L_9491044_SNP [dm6]	A	G	3.769e^-5	0.462	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3368989	3L_3368989_SNP [dm3] 3L_3368989_SNP [dm6]	C	T	3.795e^-5	0.462	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
2L	3466733	2L_3466733_SNP [dm3] 2L_3466733_SNP [dm6]	G	T	3.864e^-5	0.462	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4266270	2L_4266270_SNP [dm3] 2L_4266270_SNP [dm6]	T	C	3.876e^-5	0.462	INTERGENIC
3R	8647835	3R_8647835_SNP [dm3] 3R_12822113_SNP [dm6]	C	T	3.985e^-5	0.462	INTERGENIC
2L	697672	2L_697672_SNP [dm3] 2L_697672_SNP [dm6]	A	T	4.006e^-5	0.462	INTRON ds	TF binding site mE1_TFBS_HSA
3L	2955453	3L_2955453_SNP [dm3] 3L_2955453_SNP [dm6]	A	G	4.046e^-5	0.462	NON_SYNONYMOUS_CODING Shab	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16299417	2R_16299417_SNP [dm3] 2R_20411912_SNP [dm6]	T	A	4.053e^-5	0.462	INTERGENIC
X	1073087	X_1073087_SNP [dm3] X_1179054_SNP [dm6]	C	G	4.108e^-5	0.462	INTERGENIC
3R	10012009	3R_10012009_SNP [dm3] 3R_14186287_SNP [dm6]	C	G	4.132e^-5	0.462	INTRON Dop1R1
3L	4754834	3L_4754834_SNP [dm3] 3L_4754834_SNP [dm6]	C	A	4.171e^-5	0.462	UPSTREAM CR43881 INTRON RhoGEF64C
2L	16321297	2L_16321297_SNP [dm3] 2L_16321297_SNP [dm6]	C	T	4.188e^-5	0.462	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6259917	2L_6259917_INS [dm3] 2L_6259917_INS [dm6]	G	GG	4.192e^-5	0.462	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17845588	2R_17845588_SNP [dm3] 2R_21958083_SNP [dm6]	A	T	4.205e^-5	0.462	INTERGENIC
3R	8276203	3R_8276203_SNP [dm3] 3R_12450481_SNP [dm6]	T	A	4.257e^-5	0.462	INTRON CG18549	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16779978	2L_16779978_SNP [dm3] 2L_16779978_SNP [dm6]	G	T	4.279e^-5	0.462	INTRON Mhc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1948592	2L_1948592_SNP [dm3] 2L_1948592_SNP [dm6]	G	A	4.283e^-5	0.462	INTERGENIC	regulatory region REDfly_CRMs
3L	14269063	3L_14269063_SNP [dm3] 3L_14275963_SNP [dm6]	G	A	4.381e^-5	0.462	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1077229	X_1077229_SNP [dm3] X_1183196_SNP [dm6]	A	T	4.414e^-5	0.462	UTR_3_PRIME CG14627
2L	1015964	2L_1015964_SNP [dm3] 2L_1015964_SNP [dm6]	A	G	4.419e^-5	0.462	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13201581	2R_13201581_SNP [dm3] 2R_17314076_SNP [dm6]	T	A	4.419e^-5	0.462	INTRON mbl
3L	20000916	3L_20000916_SNP [dm3] 3L_20007816_SNP [dm6]	C	A	4.466e^-5	0.462	INTRON kug	TF binding site mE1_TFBS_zfh1
3L	5788774	3L_5788774_SNP [dm3] 3L_5795674_SNP [dm6]	G	C	4.472e^-5	0.462	SYNONYMOUS_CODING Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1072679	X_1072679_SNP [dm3] X_1178646_SNP [dm6]	G	A	4.518e^-5	0.462	INTERGENIC
3L	18208999	3L_18208999_SNP [dm3] 3L_18215899_SNP [dm6]	C	G	4.524e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16630706	2L_16630706_SNP [dm3] 2L_16630706_SNP [dm6]	T	A	4.561e^-5	0.462	INTRON CG42389
X	12026139	X_12026139_SNP [dm3] X_12132106_SNP [dm6]	C	T	4.579e^-5	0.462	INTRON Ten-a
2L	13223992	2L_13223992_SNP [dm3] 2L_13223992_SNP [dm6]	A	G	4.584e^-5	0.462	SPLICE_SITE_REGION CG16812 SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6430399	3L_6430399_SNP [dm3] 3L_6437299_SNP [dm6]	T	C	4.586e^-5	0.462	INTRON CG42747
X	1084251	X_1084251_SNP [dm3] X_1190218_SNP [dm6]	G	A	4.594e^-5	0.462	INTERGENIC
2R	2796892	2R_2796892_SNP [dm3] 2R_6909387_SNP [dm6]	G	A	4.619e^-5	0.462	INTRON CG30158
2L	13223973	2L_13223973_SNP [dm3] 2L_13223973_SNP [dm6]	T	C	4.654e^-5	0.462	DOWNSTREAM CG15480 INTRON CG16812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6916423	2R_6916423_SNP [dm3] 2R_11028918_SNP [dm6]	G	A	4.676e^-5	0.462	INTRON luna
2R	1502785	2R_1502785_SNP [dm3] 2R_5615280_SNP [dm6]	C	A	4.679e^-5	0.462	INTERGENIC	transposable element FlyBase
X	1082530	X_1082530_SNP [dm3] X_1188497_SNP [dm6]	C	T	4.740e^-5	0.462	NON_SYNONYMOUS_CODING CG14626
3R	25783327	3R_25783327_SNP [dm3] 3R_29957605_SNP [dm6]	C	G	4.750e^-5	0.462	INTRON TkR99D
3L	3363204	3L_3363204_SNP [dm3] 3L_3363204_SNP [dm6]	T	C	4.755e^-5	0.462	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2L	14651811	2L_14651811_SNP [dm3] 2L_14651811_SNP [dm6]	A	C	4.774e^-5	0.462	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5517020	3L_5517020_SNP [dm3] 3L_5523920_SNP [dm6]	A	C	4.811e^-5	0.462	INTRON Lkr
X	16996441	X_16996441_SNP [dm3] X_17102408_SNP [dm6]	T	C	4.888e^-5	0.462	SYNONYMOUS_CODING CG4991 UTR_5_PRIME CG4991
3R	25850807	3R_25850807_SNP [dm3] 3R_30025085_SNP [dm6]	A	C	4.926e^-5	0.462	INTRON Axn
3L	10112020	3L_10112020_SNP [dm3] 3L_10118920_SNP [dm6]	A	C	4.956e^-5	0.462	INTRON dpr6
2L	10053962	2L_10053962_SNP [dm3] 2L_10053962_SNP [dm6]	G	A	5.016e^-5	0.462	UPSTREAM Cpr31A EXON CR44875
2R	19185253	2R_19185253_SNP [dm3] 2R_23297730_SNP [dm6]	G	A	5.053e^-5	0.462	INTERGENIC
3L	10910352	3L_10910352_SNP [dm3] 3L_10917252_SNP [dm6]	A	C	5.078e^-5	0.462	INTERGENIC
3R	5411648	3R_5411648_SNP [dm3] 3R_9585926_SNP [dm6]	C	T	5.095e^-5	0.462	INTRON CG8301
3L	12291916	3L_12291916_SNP [dm3] 3L_12298816_SNP [dm6]	C	G	5.099e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19651155	2L_19651155_SNP [dm3] 2L_19651155_SNP [dm6]	A	T	5.106e^-5	0.462	INTRON Lar	TF binding site mE1_TFBS_HSA
2R	21119542	2R_21119542_DEL [dm3] 2R_25232019_DEL [dm6]	AA	A	5.140e^-5	0.462	DOWNSTREAM Kr INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15134617	2L_15134617_SNP [dm3] 2L_15134617_SNP [dm6]	G	T	5.152e^-5	0.462	INTERGENIC
3L	3368658	3L_3368658_DEL [dm3] 3L_3368658_DEL [dm6]	TA	T	5.165e^-5	0.462	UPSTREAM Drs DOWNSTREAM kst INTERGENIC
X	22363846	X_22363846_SNP [dm3] X_22962010_SNP [dm6]	C	T	5.178e^-5	0.462	SYNONYMOUS_CODING CG40485	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10107602	3L_10107602_SNP [dm3] 3L_10114502_SNP [dm6]	T	C	5.224e^-5	0.462	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12291917	3L_12291917_SNP [dm3] 3L_12298817_SNP [dm6]	A	T	5.236e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26652360	3R_26652360_SNP [dm3] 3R_30826638_SNP [dm6]	A	T	5.243e^-5	0.462	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
2L	3156949	2L_3156949_SNP [dm3] 2L_3156949_SNP [dm6]	G	A	5.332e^-5	0.462	INTRON Mad
2L	3411987	2L_3411987_SNP [dm3] 2L_3411987_SNP [dm6]	T	C	5.339e^-5	0.462	DOWNSTREAM CG8840 INTRON pgant2
2L	6093921	2L_6093921_SNP [dm3] 2L_6093921_SNP [dm6]	T	C	5.343e^-5	0.462	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9950600	2L_9950600_SNP [dm3] 2L_9950600_SNP [dm6]	C	T	5.368e^-5	0.462	UPSTREAM mir-87 INTERGENIC
2L	13223869	2L_13223869_SNP [dm3] 2L_13223869_SNP [dm6]	T	G	5.371e^-5	0.462	NON_SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	13685416	X_13685416_SNP [dm3] X_13791383_SNP [dm6]	T	G	5.393e^-5	0.462	UPSTREAM CG10993 INTRON inaE
2L	7053309	2L_7053309_SNP [dm3] 2L_7053309_SNP [dm6]	C	A	5.408e^-5	0.462	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20604943	X_20604943_SNP [dm3] X_20733916_SNP [dm6]	G	A	5.426e^-5	0.462	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	16622621	2L_16622621_SNP [dm3] 2L_16622621_SNP [dm6]	C	T	5.450e^-5	0.462	SYNONYMOUS_CODING CG42389 INTRON CG42389	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5880261	2L_5880261_SNP [dm3] 2L_5880261_SNP [dm6]	C	T	5.477e^-5	0.462	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20171906	2R_20171906_SNP [dm3] 2R_24284383_SNP [dm6]	C	G	5.483e^-5	0.462	UPSTREAM nvy INTRON nvy
2R	20171921	2R_20171921_SNP [dm3] 2R_24284398_SNP [dm6]	C	T	5.483e^-5	0.462	UPSTREAM nvy INTRON nvy
3L	10348169	3L_10348169_DEL [dm3] 3L_10355069_DEL [dm6]	ATTATTTT	A	5.524e^-5	0.462	INTRON CR44327	TF binding site BDTNP1_TFBS_twi
X	1074725	X_1074725_SNP [dm3] X_1180692_SNP [dm6]	A	C	5.555e^-5	0.462	SYNONYMOUS_CODING CG11379 UPSTREAM CG14627	TF binding site mE1_TFBS_chinmo
2L	6224636	2L_6224636_SNP [dm3] 2L_6224636_SNP [dm6]	G	A	5.600e^-5	0.462	UPSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20438821	X_20438821_SNP [dm3] X_20567794_SNP [dm6]	G	A	5.602e^-5	0.462	DOWNSTREAM RunxB INTERGENIC
X	4968505	X_4968505_SNP [dm3] X_5074472_SNP [dm6]	T	A	5.606e^-5	0.462	UTR_3_PRIME CG32767 DOWNSTREAM CG32767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16780053	2L_16780053_SNP [dm3] 2L_16780053_SNP [dm6]	T	C	5.639e^-5	0.462	INTRON Mhc
3L	18996267	3L_18996267_SNP [dm3] 3L_19003167_SNP [dm6]	C	A	5.662e^-5	0.462	UTR_5_PRIME CG18136 DOWNSTREAM nkd
3L	14460521	3L_14460521_SNP [dm3] 3L_14467421_SNP [dm6]	G	A	5.671e^-5	0.462	INTRON bbg
2L	1015110	2L_1015110_SNP [dm3] 2L_1015110_SNP [dm6]	C	T	5.681e^-5	0.462	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11216409	X_11216409_SNP [dm3] X_11322376_SNP [dm6]	C	G	5.704e^-5	0.462	UPSTREAM sisA INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3190712	2L_3190712_SNP [dm3] 2L_3190712_SNP [dm6]	T	A	5.706e^-5	0.462	NON_SYNONYMOUS_CODING CG34393
3L	4754831	3L_4754831_SNP [dm3] 3L_4754831_SNP [dm6]	A	T	5.731e^-5	0.462	UPSTREAM CR43881 INTRON RhoGEF64C
X	20613141	X_20613141_INS [dm3] X_20742114_INS [dm6]	C	CGCTTTTCC	5.752e^-5	0.462	INTERGENIC
2L	1620718	2L_1620718_SNP [dm3] 2L_1620718_SNP [dm6]	T	C	5.755e^-5	0.462	EXON CR44603	TF binding site BDTNP1_TFBS_dl
3L	2992609	3L_2992609_SNP [dm3] 3L_2992609_SNP [dm6]	G	T	5.757e^-5	0.462	INTERGENIC
2L	16632482	2L_16632482_SNP [dm3] 2L_16632482_SNP [dm6]	C	G	5.758e^-5	0.462	INTRON CG42389
3L	12291919	3L_12291919_SNP [dm3] 3L_12298819_SNP [dm6]	C	G	5.763e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10006120	3L_10006120_SNP [dm3] 3L_10013020_SNP [dm6]	T	C	5.785e^-5	0.462	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2003548	2L_2003548_SNP [dm3] 2L_2003548_SNP [dm6]	G	A	5.796e^-5	0.462	INTRON CG33543 EXON CR43464
X	9220309	X_9220309_SNP [dm3] X_9326276_SNP [dm6]	A	C	5.799e^-5	0.462	UTR_3_PRIME CG34449 DOWNSTREAM CG34449
2L	1197202	2L_1197202_SNP [dm3] 2L_1197202_SNP [dm6]	A	T	5.807e^-5	0.462	DOWNSTREAM CG5001 INTERGENIC
2L	16758419	2L_16758419_SNP [dm3] 2L_16758419_SNP [dm6]	T	G	5.808e^-5	0.462	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
3L	9732685	3L_9732685_SNP [dm3] 3L_9739585_SNP [dm6]	C	T	5.839e^-5	0.462	START_GAINED CG42268 UTR_5_PRIME CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
X	20605353	X_20605353_SNP [dm3] X_20734326_SNP [dm6]	A	T	5.957e^-5	0.464	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	8851447	X_8851447_SNP [dm3] X_8957414_SNP [dm6]	A	G	5.968e^-5	0.464	INTRON rdgA
2L	5710038	2L_5710038_SNP [dm3] 2L_5710038_SNP [dm6]	G	T	5.971e^-5	0.464	UTR_5_PRIME CG7236 INTRON CG7236
3R	14699481	3R_14699481_SNP [dm3] 3R_18873759_SNP [dm6]	G	T	5.985e^-5	0.464	INTERGENIC
2L	3444643	2L_3444643_SNP [dm3] 2L_3444643_SNP [dm6]	T	A	6.024e^-5	0.464	INTERGENIC
2L	3109575	2L_3109575_SNP [dm3] 2L_3109575_SNP [dm6]	G	T	6.080e^-5	0.464	UPSTREAM PpD6 INTRON toc
3L	14460472	3L_14460472_SNP [dm3] 3L_14467372_SNP [dm6]	A	T	6.094e^-5	0.464	INTRON bbg
2L	1197205	2L_1197205_SNP [dm3] 2L_1197205_SNP [dm6]	T	A	6.109e^-5	0.464	DOWNSTREAM CG5001 INTERGENIC
X	8810714	X_8810714_SNP [dm3] X_8916681_SNP [dm6]	A	T	6.117e^-5	0.464	INTRON rdgA
3R	20708545	3R_20708545_SNP [dm3] 3R_24882823_SNP [dm6]	G	A	6.162e^-5	0.464	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1612515	3L_1612515_SNP [dm3] 3L_1612515_SNP [dm6]	C	A	6.163e^-5	0.464	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	12291990	3L_12291990_SNP [dm3] 3L_12298890_SNP [dm6]	T	A	6.167e^-5	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1081402	X_1081402_SNP [dm3] X_1187369_SNP [dm6]	G	T	6.189e^-5	0.464	INTRON CG14626	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1082810	X_1082810_SNP [dm3] X_1188777_SNP [dm6]	C	A	6.215e^-5	0.464	DOWNSTREAM CG14626 INTERGENIC
3R	9962113	3R_9962113_SNP [dm3] 3R_14136391_SNP [dm6]	G	C	6.245e^-5	0.464	INTERGENIC
2R	11739044	2R_11739044_SNP [dm3] 2R_15851539_SNP [dm6]	T	C	6.299e^-5	0.464	INTRON tun	TF binding site BDTNP1_TFBS_dl
2R	7422048	2R_7422048_SNP [dm3] 2R_11534543_SNP [dm6]	C	G	6.309e^-5	0.464	INTERGENIC
X	7211278	X_7211278_SNP [dm3] X_7317245_SNP [dm6]	G	C	6.316e^-5	0.464	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	1075636	X_1075636_SNP [dm3] X_1181603_SNP [dm6]	T	C	6.335e^-5	0.464	UPSTREAM CG14627 DOWNSTREAM CG11379 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	11462666	2L_11462666_SNP [dm3] 2L_11462666_SNP [dm6]	C	T	6.396e^-5	0.467	INTERGENIC
2R	2821035	2R_2821035_SNP [dm3] 2R_6933530_SNP [dm6]	C	G	6.421e^-5	0.467	SYNONYMOUS_CODING mim INTRON mim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20606283	X_20606283_SNP [dm3] X_20735256_SNP [dm6]	T	A	6.502e^-5	0.468	SYNONYMOUS_CODING CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12617397	X_12617397_SNP [dm3] X_12723364_SNP [dm6]	A	C	6.504e^-5	0.468	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
X	11674107	X_11674107_SNP [dm3] X_11780074_SNP [dm6]	C	T	6.519e^-5	0.468	INTERGENIC
X	557172	X_557172_DEL [dm3] X_663139_DEL [dm6]	GGAGTAGGAGCAG...	G	6.598e^-5	0.47	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4754826	3L_4754826_SNP [dm3] 3L_4754826_SNP [dm6]	T	G	6.634e^-5	0.47	UPSTREAM CR43881 INTRON RhoGEF64C
2L	3109569	2L_3109569_SNP [dm3] 2L_3109569_SNP [dm6]	C	A	6.636e^-5	0.47	UPSTREAM PpD6 INTRON toc
2R	2427325	2R_2427325_SNP [dm3] 2R_6539820_SNP [dm6]	C	G	6.638e^-5	0.47	INTRON jing
3R	25518725	3R_25518725_SNP [dm3] 3R_29693003_SNP [dm6]	C	T	6.726e^-5	0.472	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1080878	X_1080878_SNP [dm3] X_1186845_SNP [dm6]	A	T	6.735e^-5	0.472	SYNONYMOUS_CODING CG14626	TF binding site mE1_TFBS_chinmo
3L	10910350	3L_10910350_SNP [dm3] 3L_10917250_SNP [dm6]	T	C	6.748e^-5	0.472	INTERGENIC
3R	25850840	3R_25850840_SNP [dm3] 3R_30025118_SNP [dm6]	T	C	6.863e^-5	0.475	INTRON Axn
2R	16060967	2R_16060967_SNP [dm3] 2R_20173462_SNP [dm6]	G	C	6.918e^-5	0.475	INTERGENIC
3L	11119953	3L_11119953_SNP [dm3] 3L_11126853_SNP [dm6]	T	C	6.922e^-5	0.475	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	1075238	X_1075238_SNP [dm3] X_1181205_SNP [dm6]	T	C	6.986e^-5	0.475	UTR_3_PRIME CG11379 UPSTREAM CG14627 DOWNSTREAM CG11379	TF binding site mE1_TFBS_chinmo
X	13685377	X_13685377_SNP [dm3] X_13791344_SNP [dm6]	C	T	7.015e^-5	0.475	UPSTREAM CG10993 INTRON inaE
3L	14910049	3L_14910049_SNP [dm3] 3L_14916949_SNP [dm6]	C	T	7.050e^-5	0.475	INTRON DCX-EMAP
3L	20760549	3L_20760549_SNP [dm3] 3L_20767449_SNP [dm6]	C	G	7.056e^-5	0.475	DOWNSTREAM CG4074 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24844268	3R_24844268_SNP [dm3] 3R_29018546_SNP [dm6]	G	C	7.067e^-5	0.475	INTRON wat
3L	5509264	3L_5509264_SNP [dm3] 3L_5516164_SNP [dm6]	A	C	7.088e^-5	0.475	INTRON Lkr	TF binding site mE1_TFBS_cad
2L	16801221	2L_16801221_SNP [dm3] 2L_16801221_SNP [dm6]	G	A	7.101e^-5	0.475	SYNONYMOUS_CODING Ugt36Bc DOWNSTREAM CG13280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12450869	2R_12450869_SNP [dm3] 2R_16563364_SNP [dm6]	C	G	7.112e^-5	0.475	INTRON DAT
X	1068074	X_1068074_INS [dm3] X_1174041_INS [dm6]	C	CT	7.173e^-5	0.475	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
2L	17364630	2L_17364630_SNP [dm3] 2L_17364630_SNP [dm6]	G	T	7.177e^-5	0.475	DOWNSTREAM CG31804 INTERGENIC
X	8215694	X_8215694_SNP [dm3] X_8321661_SNP [dm6]	G	A	7.190e^-5	0.475	INTRON nAChRalpha3
2L	16799516	2L_16799516_SNP [dm3] 2L_16799516_SNP [dm6]	G	A	7.207e^-5	0.475	UPSTREAM Ugt36Bc INTRON Ugt36Bc
X	11878252	X_11878252_SNP [dm3] X_11984219_SNP [dm6]	A	G	7.210e^-5	0.475	UPSTREAM cac INTRON cac
X	9999944	X_9999944_SNP [dm3] X_10105911_SNP [dm6]	T	C	7.251e^-5	0.475	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	25751732	3R_25751732_SNP [dm3] 3R_29926010_SNP [dm6]	G	A	7.293e^-5	0.475	SYNONYMOUS_CODING Jon99Ci
3R	8274007	3R_8274007_SNP [dm3] 3R_12448285_SNP [dm6]	C	T	7.329e^-5	0.475	SYNONYMOUS_CODING CG5538 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8626742	3R_8626742_SNP [dm3] 3R_12801020_SNP [dm6]	A	G	7.346e^-5	0.475	INTERGENIC
3L	22910302	3L_22910302_SNP [dm3] 3L_22917202_SNP [dm6]	A	G	7.354e^-5	0.475	INTRON CG12768
2L	10633508	2L_10633508_SNP [dm3] 2L_10633508_SNP [dm6]	T	G	7.367e^-5	0.475	INTRON CG7329	TF binding site mE1_TFBS_inv
X	12400300	X_12400300_SNP [dm3] X_12506267_SNP [dm6]	A	G	7.400e^-5	0.475	INTRON CG2556
X	16745016	X_16745016_SNP [dm3] X_16850983_SNP [dm6]	C	T	7.408e^-5	0.475	INTRON CG13003
X	13685437	X_13685437_SNP [dm3] X_13791404_SNP [dm6]	C	T	7.419e^-5	0.475	UPSTREAM CG10993 INTRON inaE
X	9377219	X_9377219_SNP [dm3] X_9483186_SNP [dm6]	T	C	7.483e^-5	0.476	INTRON mgl
2L	12632361	2L_12632361_DEL [dm3] 2L_12632361_DEL [dm6]	ACACATTTC	A	7.511e^-5	0.476	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	13667459	X_13667459_SNP [dm3] X_13773426_SNP [dm6]	G	A	7.513e^-5	0.476	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11216399	X_11216399_SNP [dm3] X_11322366_SNP [dm6]	A	G	7.546e^-5	0.477	UPSTREAM sisA INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19139472	3R_19139472_SNP [dm3] 3R_23313750_SNP [dm6]	G	T	7.596e^-5	0.477	SYNONYMOUS_CODING pnt INTRON pnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17539670	X_17539670_SNP [dm3] X_17645637_SNP [dm6]	G	T	7.602e^-5	0.477	INTRON RhoGAPp190
2L	14413569	2L_14413569_SNP [dm3] 2L_14413569_SNP [dm6]	C	A	7.684e^-5	0.48	INTERGENIC
X	1082692	X_1082692_SNP [dm3] X_1188659_SNP [dm6]	A	T	7.727e^-5	0.481	DOWNSTREAM CG14626 INTERGENIC
3L	20031655	3L_20031655_SNP [dm3] 3L_20038555_SNP [dm6]	T	C	7.875e^-5	0.482	INTERGENIC
3R	25320269	3R_25320269_SNP [dm3] 3R_29494547_SNP [dm6]	T	G	7.917e^-5	0.482	UPSTREAM CG2010 DOWNSTREAM Diedel INTERGENIC
2L	5592216	2L_5592216_SNP [dm3] 2L_5592216_SNP [dm6]	C	G	7.920e^-5	0.482	INTERGENIC
3L	11798818	3L_11798818_SNP [dm3] 3L_11805718_SNP [dm6]	C	G	7.948e^-5	0.482	NON_SYNONYMOUS_CODING CG42255
3R	14697493	3R_14697493_SNP [dm3] 3R_18871771_SNP [dm6]	C	T	7.950e^-5	0.482	INTERGENIC
3L	10005952	3L_10005952_SNP [dm3] 3L_10012852_SNP [dm6]	T	C	7.979e^-5	0.482	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15462650	3R_15462650_SNP [dm3] 3R_19636928_SNP [dm6]	A	C	7.988e^-5	0.482	SYNONYMOUS_CODING subdued
X	20613236	X_20613236_SNP [dm3] X_20742209_SNP [dm6]	C	T	7.999e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10910133	3L_10910133_SNP [dm3] 3L_10917033_SNP [dm6]	A	G	8.030e^-5	0.482	INTERGENIC
2R	15437350	2R_15437350_SNP [dm3] 2R_19549845_SNP [dm6]	A	C	8.032e^-5	0.482	INTRON sm
3R	15462287	3R_15462287_SNP [dm3] 3R_19636565_SNP [dm6]	C	T	8.044e^-5	0.482	NON_SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	10910254	3L_10910254_SNP [dm3] 3L_10917154_SNP [dm6]	T	G	8.044e^-5	0.482	INTERGENIC
3R	16961555	3R_16961555_SNP [dm3] 3R_21135833_SNP [dm6]	T	A	8.100e^-5	0.482	UPSTREAM Ubpy INTRON Ubpy
X	1076731	X_1076731_SNP [dm3] X_1182698_SNP [dm6]	C	T	8.128e^-5	0.482	SYNONYMOUS_CODING CG14627	TF binding site mE1_TFBS_chinmo
2L	16582537	2L_16582537_SNP [dm3] 2L_16582537_SNP [dm6]	G	C	8.194e^-5	0.482	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26450185	3R_26450185_SNP [dm3] 3R_30624463_SNP [dm6]	T	G	8.197e^-5	0.482	DOWNSTREAM CR44136 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	11739144	2R_11739144_SNP [dm3] 2R_15851639_SNP [dm6]	T	C	8.223e^-5	0.482	INTRON tun	TF binding site BDTNP1_TFBS_dl
2L	8500002	2L_8500002_SNP [dm3] 2L_8500002_SNP [dm6]	C	T	8.225e^-5	0.482	INTRON Dh31
X	7057203	X_7057203_SNP [dm3] X_7163170_SNP [dm6]	T	G	8.306e^-5	0.482	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12900652	X_12900652_SNP [dm3] X_13006619_SNP [dm6]	T	C	8.396e^-5	0.482	INTRON rad	TF binding site mE1_TFBS_chinmo
2L	16758608	2L_16758608_SNP [dm3] 2L_16758608_SNP [dm6]	G	A	8.396e^-5	0.482	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
3L	10107586	3L_10107586_SNP [dm3] 3L_10114486_SNP [dm6]	G	A	8.498e^-5	0.482	DOWNSTREAM dpr6 INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6205553	2L_6205553_SNP [dm3] 2L_6205553_SNP [dm6]	C	A	8.552e^-5	0.482	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	1063499	X_1063499_SNP [dm3] X_1169466_SNP [dm6]	G	C	8.595e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4121835	2L_4121835_SNP [dm3] 2L_4121835_SNP [dm6]	A	T	8.601e^-5	0.482	NON_SYNONYMOUS_CODING Sr-CI DOWNSTREAM Sr-CIII
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	8.610e^-5	0.482	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
X	9652250	X_9652250_SNP [dm3] X_9758217_SNP [dm6]	T	C	8.629e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	6796094	2R_6796094_DEL [dm3] 2R_10908589_DEL [dm6]	ATTGAAACGAATTTCATT...	A	8.644e^-5	0.482	INTERGENIC
2R	16115423	2R_16115423_DEL [dm3] 2R_20227918_DEL [dm6]	TTC	G	8.671e^-5	0.482	INTERGENIC
X	13685428	X_13685428_SNP [dm3] X_13791395_SNP [dm6]	A	T	8.690e^-5	0.482	UPSTREAM CG10993 INTRON inaE
2L	16950560	2L_16950560_SNP [dm3] 2L_16950560_SNP [dm6]	C	T	8.692e^-5	0.482	UPSTREAM CR44393 INTERGENIC
3R	24166729	3R_24166729_SNP [dm3] 3R_28341007_SNP [dm6]	T	C	8.710e^-5	0.482	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	2612820	X_2612820_SNP [dm3] X_2718787_SNP [dm6]	G	A	8.728e^-5	0.482	INTRON CG2701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	708682	3L_708682_SNP [dm3] 3L_708682_SNP [dm6]	A	T	8.738e^-5	0.482	UTR_3_PRIME CkIIalpha-i3 UPSTREAM CG13895	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3R	14184735	3R_14184735_SNP [dm3] 3R_18359013_SNP [dm6]	G	A	8.739e^-5	0.482	INTRON CG15803
X	9325073	X_9325073_SNP [dm3] X_9431040_SNP [dm6]	A	G	8.813e^-5	0.482	INTRON mgl
2R	1502880	2R_1502880_SNP [dm3] 2R_5615375_SNP [dm6]	C	A	8.925e^-5	0.482	INTERGENIC	transposable element FlyBase
3L	3369542	3L_3369542_SNP [dm3] 3L_3369542_SNP [dm6]	T	G	8.928e^-5	0.482	UPSTREAM Drs DOWNSTREAM YT521-B INTERGENIC	regulatory region REDfly_CRMs
2L	12632423	2L_12632423_SNP [dm3] 2L_12632423_SNP [dm6]	C	T	8.965e^-5	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20105083	2R_20105083_SNP [dm3] 2R_24217560_SNP [dm6]	G	T	8.992e^-5	0.482	INTRON CG30419
2L	6401022	2L_6401022_SNP [dm3] 2L_6401022_SNP [dm6]	G	A	9.043e^-5	0.482	INTRON CG42368
2L	19964795	2L_19964795_SNP [dm3] 2L_19964795_SNP [dm6]	G	C	9.057e^-5	0.482	UPSTREAM CR45701 DOWNSTREAM CG16772 & 1 other INTRON CG10680
2R	6796125	2R_6796125_SNP [dm3] 2R_10908620_SNP [dm6]	A	T	9.092e^-5	0.482	INTERGENIC
3R	11939709	3R_11939709_SNP [dm3] 3R_16113987_SNP [dm6]	T	G	9.117e^-5	0.482	INTERGENIC
3R	14184909	3R_14184909_SNP [dm3] 3R_18359187_SNP [dm6]	T	C	9.136e^-5	0.482	INTRON CG15803
3L	10910185	3L_10910185_SNP [dm3] 3L_10917085_SNP [dm6]	A	T	9.142e^-5	0.482	INTERGENIC
2L	17364634	2L_17364634_SNP [dm3] 2L_17364634_SNP [dm6]	G	A	9.168e^-5	0.482	DOWNSTREAM CG31804 INTERGENIC
2L	19698593	2L_19698593_SNP [dm3] 2L_19698593_SNP [dm6]	G	C	9.231e^-5	0.482	DOWNSTREAM scw INTRON Lar
3L	14470576	3L_14470576_SNP [dm3] 3L_14477476_SNP [dm6]	T	A	9.240e^-5	0.482	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
3R	25838384	3R_25838384_SNP [dm3] 3R_30012662_SNP [dm6]	C	T	9.245e^-5	0.482	INTRON CG7920
3L	7172453	3L_7172453_SNP [dm3] 3L_7179353_SNP [dm6]	T	C	9.260e^-5	0.482	INTRON Dscam2
2L	12632354	2L_12632354_SNP [dm3] 2L_12632354_SNP [dm6]	C	T	9.291e^-5	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	720531	2L_720531_SNP [dm3] 2L_720531_SNP [dm6]	G	C	9.319e^-5	0.482	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12632399	2L_12632399_SNP [dm3] 2L_12632399_SNP [dm6]	T	A	9.355e^-5	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19647445	2L_19647445_SNP [dm3] 2L_19647445_SNP [dm6]	T	C	9.359e^-5	0.482	INTRON Lar
3R	26699987	3R_26699987_SNP [dm3] 3R_30874265_SNP [dm6]	A	G	9.434e^-5	0.482	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14652564	2L_14652564_SNP [dm3] 2L_14652564_SNP [dm6]	A	G	9.451e^-5	0.482	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	13185766	X_13185766_SNP [dm3] X_13291733_SNP [dm6]	A	G	9.486e^-5	0.482	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12482871	3L_12482871_SNP [dm3] 3L_12489771_SNP [dm6]	G	A	9.489e^-5	0.482	SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9291423	3L_9291423_SNP [dm3] 3L_9298323_SNP [dm6]	T	C	9.504e^-5	0.482	INTERGENIC
3R	24115839	3R_24115839_SNP [dm3] 3R_28290117_SNP [dm6]	G	C	9.539e^-5	0.482	INTERGENIC
X	10401449	X_10401449_SNP [dm3] X_10507416_SNP [dm6]	T	G	9.549e^-5	0.482	INTRON spri
X	18452786	X_18452786_SNP [dm3] X_18558753_SNP [dm6]	A	C	9.608e^-5	0.482	INTRON Bx
X	17772977	X_17772977_SNP [dm3] X_17878944_SNP [dm6]	T	C	9.622e^-5	0.482	INTRON mnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11812915	X_11812915_SNP [dm3] X_11918882_SNP [dm6]	G	T	9.645e^-5	0.482	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
X	1066605	X_1066605_SNP [dm3] X_1172572_SNP [dm6]	T	G	9.659e^-5	0.482	NON_SYNONYMOUS_CODING CG11378
2L	12632401	2L_12632401_SNP [dm3] 2L_12632401_SNP [dm6]	T	A	9.720e^-5	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12632405	2L_12632405_SNP [dm3] 2L_12632405_SNP [dm6]	G	A	9.720e^-5	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24166585	3R_24166585_SNP [dm3] 3R_28340863_SNP [dm6]	A	G	9.788e^-5	0.482	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
X	3727372	X_3727372_SNP [dm3] X_3833339_SNP [dm6]	T	G	9.792e^-5	0.482	INTRON ec	TF binding site mE1_TFBS_chinmo
3L	11340277	3L_11340277_SNP [dm3] 3L_11347177_SNP [dm6]	T	G	9.868e^-5	0.482	INTERGENIC
3L	14226840	3L_14226840_SNP [dm3] 3L_14233740_SNP [dm6]	G	A	9.873e^-5	0.482	SYNONYMOUS_CODING CG7924 DOWNSTREAM nuf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14223076	X_14223076_SNP [dm3] X_14329043_SNP [dm6]	T	C	9.880e^-5	0.482	INTRON dpr8
X	20605123	X_20605123_SNP [dm3] X_20734096_SNP [dm6]	C	A	9.882e^-5	0.482	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13621338	3L_13621338_SNP [dm3] 3L_13628238_SNP [dm6]	G	A	9.900e^-5	0.482	INTRON bru-3
X	12449859	X_12449859_SNP [dm3] X_12555826_SNP [dm6]	A	G	9.905e^-5	0.482	INTRON CG43921
2R	20105084	2R_20105084_SNP [dm3] 2R_24217561_SNP [dm6]	C	T	9.920e^-5	0.482	INTRON CG30419
3L	3368635	3L_3368635_SNP [dm3] 3L_3368635_SNP [dm6]	C	T	9.928e^-5	0.482	UPSTREAM Drs DOWNSTREAM kst INTERGENIC
X	12764679	X_12764679_SNP [dm3] X_12870646_SNP [dm6]	T	C	9.945e^-5	0.482	INTRON Pde9
3R	16961630	3R_16961630_SNP [dm3] 3R_21135908_SNP [dm6]	T	C	9.956e^-5	0.482	SYNONYMOUS_CODING Ubpy UPSTREAM Ubpy
3L	4373596	3L_4373596_SNP [dm3] 3L_4373596_SNP [dm6]	C	A	9.997e^-5	0.482	INTRON DopEcR
3R	8631679	3R_8631679_SNP [dm3] 3R_12805957_SNP [dm6]	A	T	1.003e^-4	0.482	INTERGENIC
X	20605042	X_20605042_SNP [dm3] X_20734015_SNP [dm6]	C	G	1.006e^-4	0.482	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	7057196	X_7057196_SNP [dm3] X_7163163_SNP [dm6]	T	A	1.009e^-4	0.482	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18383309	X_18383309_SNP [dm3] X_18489276_SNP [dm6]	A	G	1.013e^-4	0.482	INTRON CG15046	TF binding site mE1_TFBS_chinmo
X	14235176	X_14235176_SNP [dm3] X_14341143_SNP [dm6]	T	G	1.014e^-4	0.482	INTRON dpr8
2L	13223985	2L_13223985_SNP [dm3] 2L_13223985_SNP [dm6]	T	G	1.016e^-4	0.482	DOWNSTREAM CG15480 INTRON CG16812	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5065288	3L_5065288_SNP [dm3] 3L_5065288_SNP [dm6]	C	G	1.017e^-4	0.482	INTRON Con
3L	10910178	3L_10910178_SNP [dm3] 3L_10917078_SNP [dm6]	C	A	1.017e^-4	0.482	INTERGENIC
X	13733529	X_13733529_SNP [dm3] X_13839496_SNP [dm6]	G	A	1.026e^-4	0.482	INTRON AMPdeam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	6720888	2L_6720888_SNP [dm3] 2L_6720888_SNP [dm6]	T	C	1.026e^-4	0.482	NON_SYNONYMOUS_CODING homer UTR_3_PRIME homer
X	1081247	X_1081247_SNP [dm3] X_1187214_SNP [dm6]	G	A	1.028e^-4	0.482	INTRON CG14626	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16609120	2L_16609120_SNP [dm3] 2L_16609120_SNP [dm6]	A	G	1.033e^-4	0.482	NON_SYNONYMOUS_CODING CG4631 INTRON CG42389
X	1068086	X_1068086_SNP [dm3] X_1174053_SNP [dm6]	G	A	1.037e^-4	0.482	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
3L	2351039	3L_2351039_SNP [dm3] 3L_2351039_SNP [dm6]	C	T	1.040e^-4	0.482	INTERGENIC
X	11897967	X_11897967_SNP [dm3] X_12003934_SNP [dm6]	T	C	1.042e^-4	0.482	UPSTREAM fw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8215771	X_8215771_SNP [dm3] X_8321738_SNP [dm6]	G	A	1.044e^-4	0.482	INTRON nAChRalpha3
X	1077231	X_1077231_SNP [dm3] X_1183198_SNP [dm6]	A	G	1.046e^-4	0.482	UTR_3_PRIME CG14627
2R	16115428	2R_16115428_MNP [dm3] 2R_20227923_MNP [dm6]	TCC	AGT	1.050e^-4	0.482	INTERGENIC
2R	17187321	2R_17187321_SNP [dm3] 2R_21299816_SNP [dm6]	A	G	1.051e^-4	0.482	INTRON CG42672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1613890	3L_1613890_SNP [dm3] 3L_1613890_SNP [dm6]	C	T	1.054e^-4	0.482	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11288181	2R_11288181_SNP [dm3] 2R_15400676_SNP [dm6]	C	T	1.055e^-4	0.482	UPSTREAM CG43729 INTERGENIC
2L	17364632	2L_17364632_SNP [dm3] 2L_17364632_SNP [dm6]	T	G	1.057e^-4	0.482	DOWNSTREAM CG31804 INTERGENIC
2R	11618521	2R_11618521_SNP [dm3] 2R_15731016_SNP [dm6]	A	T	1.060e^-4	0.482	INTRON CG30089	TF binding site mE1_TFBS_HSA
2R	2818272	2R_2818272_SNP [dm3] 2R_6930767_SNP [dm6]	G	A	1.063e^-4	0.482	INTRON mim
2L	3158442	2L_3158442_SNP [dm3] 2L_3158442_SNP [dm6]	T	C	1.064e^-4	0.482	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2R	15434757	2R_15434757_SNP [dm3] 2R_19547252_SNP [dm6]	A	T	1.066e^-4	0.482	UPSTREAM sm INTRON sm
2L	3714629	2L_3714629_SNP [dm3] 2L_3714629_SNP [dm6]	G	T	1.070e^-4	0.482	INTRON CG2818	TF binding site mE1_TFBS_sens
3L	4095889	3L_4095889_SNP [dm3] 3L_4095889_SNP [dm6]	G	C	1.072e^-4	0.482	INTRON CG14995	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16830053	2L_16830053_SNP [dm3] 2L_16830053_SNP [dm6]	G	C	1.073e^-4	0.482	NON_SYNONYMOUS_CODING CG31739	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20781427	3L_20781427_SNP [dm3] 3L_20788327_SNP [dm6]	C	A	1.074e^-4	0.482	UPSTREAM CG11396 DOWNSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	19211170	X_19211170_SNP [dm3] X_19317137_SNP [dm6]	A	G	1.077e^-4	0.482	INTRON out
2L	17364623	2L_17364623_SNP [dm3] 2L_17364623_SNP [dm6]	G	A	1.079e^-4	0.482	DOWNSTREAM CG31804 INTERGENIC
2L	12632376	2L_12632376_SNP [dm3] 2L_12632376_SNP [dm6]	T	A	1.082e^-4	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20031691	3L_20031691_SNP [dm3] 3L_20038591_SNP [dm6]	A	G	1.084e^-4	0.482	INTERGENIC
3L	3361980	3L_3361980_SNP [dm3] 3L_3361980_SNP [dm6]	A	G	1.088e^-4	0.482	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	7025069	2R_7025069_SNP [dm3] 2R_11137564_SNP [dm6]	T	C	1.090e^-4	0.482	INTRON BBS4
3L	21091233	3L_21091233_SNP [dm3] 3L_21098133_SNP [dm6]	T	C	1.093e^-4	0.482	INTRON ko
X	11812986	X_11812986_SNP [dm3] X_11918953_SNP [dm6]	T	C	1.095e^-4	0.482	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
3R	25806552	3R_25806552_SNP [dm3] 3R_29980830_SNP [dm6]	T	C	1.098e^-4	0.482	INTERGENIC
2L	16582457	2L_16582457_SNP [dm3] 2L_16582457_SNP [dm6]	G	A	1.100e^-4	0.482	INTRON CG42389	TF binding site mE1_TFBS_bab1
3L	17261035	3L_17261035_SNP [dm3] 3L_17267935_SNP [dm6]	C	G	1.101e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18149806	X_18149806_SNP [dm3] X_18255773_SNP [dm6]	G	T	1.104e^-4	0.482	DOWNSTREAM CR45613 INTERGENIC
3L	2129721	3L_2129721_SNP [dm3] 3L_2129721_SNP [dm6]	A	G	1.104e^-4	0.482	SYNONYMOUS_CODING zormin
X	20784341	X_20784341_SNP [dm3] X_20913314_SNP [dm6]	T	C	1.107e^-4	0.482	INTRON shakB
3L	4640059	3L_4640059_SNP [dm3] 3L_4640059_SNP [dm6]	C	T	1.111e^-4	0.482	INTRON axo
3R	26931465	3R_26931465_SNP [dm3] 3R_31105743_SNP [dm6]	T	C	1.114e^-4	0.482	DOWNSTREAM CG11318 INTERGENIC
3L	10508195	3L_10508195_SNP [dm3] 3L_10515095_SNP [dm6]	C	A	1.115e^-4	0.482	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16772302	2L_16772302_SNP [dm3] 2L_16772302_SNP [dm6]	T	C	1.116e^-4	0.482	INTRON Mhc
2L	9558317	2L_9558317_SNP [dm3] 2L_9558317_SNP [dm6]	C	T	1.127e^-4	0.482	INTRON jp
2L	16716297	2L_16716297_INS [dm3] 2L_16716297_INS [dm6]	A	ATTTATTTATTGCACCT...	1.127e^-4	0.482	UPSTREAM CG31808 INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	19977451	2R_19977451_SNP [dm3] 2R_24089928_SNP [dm6]	T	C	1.127e^-4	0.482	SYNONYMOUS_CODING snama DOWNSTREAM snama
3R	25522011	3R_25522011_SNP [dm3] 3R_29696289_SNP [dm6]	C	T	1.130e^-4	0.482	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25838386	3R_25838386_SNP [dm3] 3R_30012664_SNP [dm6]	C	T	1.131e^-4	0.482	INTRON CG7920
X	15421973	X_15421973_SNP [dm3] X_15527940_SNP [dm6]	A	G	1.133e^-4	0.482	INTRON Ac13E
X	10778190	X_10778190_DEL [dm3] X_10884157_DEL [dm6]	TCTCGATGAT	T	1.134e^-4	0.482	INTRON Ork1
3L	12263921	3L_12263921_SNP [dm3] 3L_12270821_SNP [dm6]	A	G	1.135e^-4	0.482	NON_SYNONYMOUS_CODING Pbgs DOWNSTREAM CG4300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8643387	3R_8643387_SNP [dm3] 3R_12817665_SNP [dm6]	C	T	1.142e^-4	0.482	UPSTREAM CG31345 INTERGENIC
3R	14184807	3R_14184807_SNP [dm3] 3R_18359085_SNP [dm6]	T	A	1.147e^-4	0.482	INTRON CG15803
2L	15370132	2L_15370132_SNP [dm3] 2L_15370132_SNP [dm6]	T	A	1.148e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6816762	3R_6816762_SNP [dm3] 3R_10991040_SNP [dm6]	A	G	1.150e^-4	0.482	INTRON CG34114
X	11812932	X_11812932_SNP [dm3] X_11918899_SNP [dm6]	C	T	1.152e^-4	0.482	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
2L	14652573	2L_14652573_SNP [dm3] 2L_14652573_SNP [dm6]	C	A	1.155e^-4	0.482	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16803711	2L_16803711_SNP [dm3] 2L_16803711_SNP [dm6]	G	T	1.165e^-4	0.482	INTRON CG13280
2L	20084530	2L_20084530_SNP [dm3] 2L_20084530_SNP [dm6]	T	C	1.165e^-4	0.482	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3655593	3L_3655593_SNP [dm3] 3L_3655593_SNP [dm6]	G	A	1.168e^-4	0.482	UPSTREAM CG10862 INTERGENIC
X	1097976	X_1097976_SNP [dm3] X_1203943_SNP [dm6]	T	C	1.170e^-4	0.482	NON_SYNONYMOUS_CODING CG11381 DOWNSTREAM CG14625
X	1077060	X_1077060_INS [dm3] X_1183027_INS [dm6]	T	GATCCCAC	1.172e^-4	0.482	UTR_3_PRIME CG14627
2R	501548	2R_501548_SNP [dm3] 2R_4614043_SNP [dm6]	C	G	1.173e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16830514	2L_16830514_SNP [dm3] 2L_16830514_SNP [dm6]	C	A	1.177e^-4	0.482	INTRON CG31739	TF binding site mE1_TFBS_cad
2L	19645896	2L_19645896_SNP [dm3] 2L_19645896_SNP [dm6]	C	A	1.180e^-4	0.482	INTRON Lar
2L	10477223	2L_10477223_SNP [dm3] 2L_10477223_SNP [dm6]	C	A	1.183e^-4	0.482	UTR_5_PRIME RluA-2 INTRON RluA-2	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	14460693	3L_14460693_SNP [dm3] 3L_14467593_SNP [dm6]	A	T	1.185e^-4	0.482	INTRON bbg	TF binding site BDTNP1_TFBS_hb
3R	12370609	3R_12370609_SNP [dm3] 3R_16544887_SNP [dm6]	G	A	1.187e^-4	0.482	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16005781	3R_16005781_SNP [dm3] 3R_20180059_SNP [dm6]	G	T	1.188e^-4	0.482	INTERGENIC
2L	15110975	2L_15110975_SNP [dm3] 2L_15110975_SNP [dm6]	A	T	1.189e^-4	0.482	INTRON CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	1073699	X_1073699_SNP [dm3] X_1179666_SNP [dm6]	A	T	1.190e^-4	0.482	UPSTREAM CG11379 INTERGENIC
2R	19377108	2R_19377108_SNP [dm3] 2R_23489585_SNP [dm6]	T	C	1.192e^-4	0.482	INTRON CG43795
2L	5700300	2L_5700300_SNP [dm3] 2L_5700300_SNP [dm6]	A	T	1.196e^-4	0.482	INTERGENIC
2L	5453213	2L_5453213_SNP [dm3] 2L_5453213_SNP [dm6]	C	G	1.197e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	12632382	2L_12632382_SNP [dm3] 2L_12632382_SNP [dm6]	C	A	1.198e^-4	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14184848	3R_14184848_SNP [dm3] 3R_18359126_SNP [dm6]	A	T	1.206e^-4	0.482	INTRON CG15803
2L	17122259	2L_17122259_SNP [dm3] 2L_17122259_SNP [dm6]	C	A	1.207e^-4	0.482	INTERGENIC
2L	3432713	2L_3432713_SNP [dm3] 2L_3432713_SNP [dm6]	G	A	1.207e^-4	0.482	INTERGENIC
2L	16733758	2L_16733758_SNP [dm3] 2L_16733758_SNP [dm6]	G	A	1.215e^-4	0.482	UTR_3_PRIME glu DOWNSTREAM CG17904
2R	11288180	2R_11288180_SNP [dm3] 2R_15400675_SNP [dm6]	T	A	1.220e^-4	0.482	UPSTREAM CG43729 INTERGENIC
2R	7719522	2R_7719522_SNP [dm3] 2R_11832017_SNP [dm6]	C	G	1.221e^-4	0.482	INTRON Sobp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12632344	2L_12632344_SNP [dm3] 2L_12632344_SNP [dm6]	T	A	1.226e^-4	0.482	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3687378	3L_3687378_SNP [dm3] 3L_3687378_SNP [dm6]	T	C	1.229e^-4	0.482	INTERGENIC
3L	2388645	3L_2388645_SNP [dm3] 3L_2388645_SNP [dm6]	A	T	1.233e^-4	0.482	UTR_5_PRIME CG45186 UPSTREAM CG42787 DOWNSTREAM CG32299 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12771624	2R_12771624_SNP [dm3] 2R_16884119_SNP [dm6]	C	A	1.234e^-4	0.482	SYNONYMOUS_CODING CG6472 INTRON CG8910
3R	9961955	3R_9961955_SNP [dm3] 3R_14136233_SNP [dm6]	C	G	1.235e^-4	0.482	INTERGENIC
X	20322398	X_20322398_SNP [dm3] X_20451371_SNP [dm6]	T	A	1.238e^-4	0.482	INTRON CG32506
3R	24166758	3R_24166758_SNP [dm3] 3R_28341036_SNP [dm6]	T	A	1.238e^-4	0.482	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	14184842	3R_14184842_SNP [dm3] 3R_18359120_SNP [dm6]	C	T	1.241e^-4	0.482	INTRON CG15803
X	20605034	X_20605034_SNP [dm3] X_20734007_SNP [dm6]	A	T	1.242e^-4	0.482	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	1074060	X_1074060_SNP [dm3] X_1180027_SNP [dm6]	A	C	1.243e^-4	0.482	UPSTREAM CG11379 INTERGENIC
2L	9336081	2L_9336081_SNP [dm3] 2L_9336081_SNP [dm6]	A	G	1.250e^-4	0.482	INTRON Eaat1
X	1073820	X_1073820_SNP [dm3] X_1179787_SNP [dm6]	T	C	1.254e^-4	0.482	UPSTREAM CG11379 INTERGENIC
3L	6983996	3L_6983996_SNP [dm3] 3L_6990896_SNP [dm6]	C	T	1.258e^-4	0.482	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	20603933	X_20603933_SNP [dm3] X_20732906_SNP [dm6]	T	C	1.260e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_HSA
X	12764624	X_12764624_SNP [dm3] X_12870591_SNP [dm6]	T	A	1.263e^-4	0.482	INTRON Pde9
3L	14268126	3L_14268126_SNP [dm3] 3L_14275026_SNP [dm6]	A	C	1.263e^-4	0.482	UTR_5_PRIME fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	8579709	3R_8579709_SNP [dm3] 3R_12753987_SNP [dm6]	T	C	1.264e^-4	0.482	INTRON beat-Vc
3L	8171719	3L_8171719_INS [dm3] 3L_8178619_INS [dm6]	C	CATTCCAT	1.266e^-4	0.482	UPSTREAM Nmt DOWNSTREAM mthl7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	12765130	X_12765130_SNP [dm3] X_12871097_SNP [dm6]	T	A	1.267e^-4	0.482	INTRON Pde9
2R	11385230	2R_11385230_SNP [dm3] 2R_15497725_SNP [dm6]	A	T	1.268e^-4	0.482	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
X	16745032	X_16745032_SNP [dm3] X_16850999_SNP [dm6]	A	G	1.271e^-4	0.482	INTRON CG13003
3L	10005910	3L_10005910_SNP [dm3] 3L_10012810_SNP [dm6]	G	A	1.272e^-4	0.482	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1068071	X_1068071_SNP [dm3] X_1174038_SNP [dm6]	C	T	1.277e^-4	0.482	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
3L	4217644	3L_4217644_SNP [dm3] 3L_4217644_SNP [dm6]	A	G	1.279e^-4	0.482	INTRON CG43367
2R	2794063	2R_2794063_SNP [dm3] 2R_6906558_SNP [dm6]	C	G	1.279e^-4	0.482	INTRON CG30158
3L	5784215	3L_5784215_SNP [dm3] 3L_5791115_SNP [dm6]	C	T	1.280e^-4	0.482	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25850830	3R_25850830_SNP [dm3] 3R_30025108_SNP [dm6]	A	G	1.280e^-4	0.482	INTRON Axn
2R	11618579	2R_11618579_SNP [dm3] 2R_15731074_SNP [dm6]	C	G	1.282e^-4	0.482	INTRON CG30089
2L	6721129	2L_6721129_SNP [dm3] 2L_6721129_SNP [dm6]	A	C	1.287e^-4	0.482	SPLICE_SITE_REGION homer SYNONYMOUS_CODING homer
2L	13475746	2L_13475746_SNP [dm3] 2L_13475746_SNP [dm6]	C	A	1.289e^-4	0.482	SYNONYMOUS_CODING CG42784 INTRON CG42784	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1712142	2L_1712142_SNP [dm3] 2L_1712142_SNP [dm6]	C	T	1.290e^-4	0.482	SPLICE_SITE_REGION frtz DOWNSTREAM mRpL48 INTRON frtz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16758422	2L_16758422_SNP [dm3] 2L_16758422_SNP [dm6]	T	C	1.294e^-4	0.482	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
2L	16758476	2L_16758476_SNP [dm3] 2L_16758476_SNP [dm6]	C	T	1.294e^-4	0.482	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
2L	16758494	2L_16758494_SNP [dm3] 2L_16758494_SNP [dm6]	G	A	1.294e^-4	0.482	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
2L	16552230	2L_16552230_SNP [dm3] 2L_16552230_SNP [dm6]	T	C	1.296e^-4	0.482	INTRON CG42389	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	15819751	2L_15819751_SNP [dm3] 2L_15819751_SNP [dm6]	A	G	1.299e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_run
3L	3361284	3L_3361284_SNP [dm3] 3L_3361284_SNP [dm6]	A	G	1.306e^-4	0.482	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
X	18763659	X_18763659_SNP [dm3] X_18869626_SNP [dm6]	T	C	1.306e^-4	0.482	INTRON CG34401	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10204867	3R_10204867_SNP [dm3] 3R_14379145_SNP [dm6]	G	C	1.306e^-4	0.482	INTERGENIC
2R	7719482	2R_7719482_SNP [dm3] 2R_11831977_SNP [dm6]	T	C	1.308e^-4	0.482	INTRON Sobp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16813019	2L_16813019_SNP [dm3] 2L_16813019_SNP [dm6]	G	T	1.310e^-4	0.482	INTRON CG13280 & 1 other
2L	16803712	2L_16803712_SNP [dm3] 2L_16803712_SNP [dm6]	A	G	1.310e^-4	0.482	INTRON CG13280
3L	2955443	3L_2955443_SNP [dm3] 3L_2955443_SNP [dm6]	A	G	1.312e^-4	0.482	SYNONYMOUS_CODING Shab	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18204613	2R_18204613_SNP [dm3] 2R_22317108_SNP [dm6]	A	C	1.316e^-4	0.482	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6927336	2R_6927336_SNP [dm3] 2R_11039831_SNP [dm6]	A	G	1.324e^-4	0.482	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	4209634	2L_4209634_SNP [dm3] 2L_4209634_SNP [dm6]	C	A	1.324e^-4	0.482	SYNONYMOUS_CODING ft
X	20603920	X_20603920_SNP [dm3] X_20732893_SNP [dm6]	T	A	1.326e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11340293	3L_11340293_SNP [dm3] 3L_11347193_SNP [dm6]	T	A	1.331e^-4	0.482	INTERGENIC
X	16745007	X_16745007_SNP [dm3] X_16850974_SNP [dm6]	T	A	1.332e^-4	0.482	INTRON CG13003
2L	16808005	2L_16808005_SNP [dm3] 2L_16808005_SNP [dm6]	G	A	1.334e^-4	0.482	INTRON CG13280 & 1 other
2R	20097397	2R_20097397_SNP [dm3] 2R_24209874_SNP [dm6]	C	G	1.334e^-4	0.482	INTERGENIC
3L	10508169	3L_10508169_INS [dm3] 3L_10515069_INS [dm6]	T	TT	1.335e^-4	0.482	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15370110	2L_15370110_INS [dm3] 2L_15370110_INS [dm6]	T	TT	1.345e^-4	0.483	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	20813464	3L_20813464_SNP [dm3] 3L_20820364_SNP [dm6]	T	G	1.345e^-4	0.483	UTR_5_PRIME Pka-R1 INTRON Pka-R1
X	1068047	X_1068047_SNP [dm3] X_1174014_SNP [dm6]	A	T	1.347e^-4	0.483	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
3R	8274835	3R_8274835_SNP [dm3] 3R_12449113_SNP [dm6]	T	A	1.356e^-4	0.485	UPSTREAM CG18549 DOWNSTREAM CG5538 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14184754	3R_14184754_SNP [dm3] 3R_18359032_SNP [dm6]	C	T	1.357e^-4	0.485	INTRON CG15803
X	8990442	X_8990442_SNP [dm3] X_9096409_SNP [dm6]	A	T	1.365e^-4	0.486	INTRON CG7766
3L	3352193	3L_3352193_SNP [dm3] 3L_3352193_SNP [dm6]	A	C	1.365e^-4	0.486	INTRON kst
3R	22565791	3R_22565791_SNP [dm3] 3R_26740069_SNP [dm6]	T	C	1.368e^-4	0.486	INTERGENIC
2L	5825195	2L_5825195_SNP [dm3] 2L_5825195_SNP [dm6]	C	T	1.378e^-4	0.487	UTR_5_PRIME TrissinR
3R	25799032	3R_25799032_SNP [dm3] 3R_29973310_SNP [dm6]	A	G	1.380e^-4	0.487	INTERGENIC
2L	2058004	2L_2058004_SNP [dm3] 2L_2058004_SNP [dm6]	G	A	1.380e^-4	0.487	DOWNSTREAM dpr3 & 1 other INTERGENIC
3R	24171127	3R_24171127_SNP [dm3] 3R_28345405_SNP [dm6]	G	A	1.386e^-4	0.489	DOWNSTREAM Moca-cyp INTERGENIC
X	20352329	X_20352329_INS [dm3] X_20481302_INS [dm6]	T	TT	1.398e^-4	0.489	INTRON RhoGAP19D	TF binding site mE1_TFBS_Trl
3L	21505747	3L_21505747_SNP [dm3] 3L_21512647_SNP [dm6]	A	C	1.400e^-4	0.489	UTR_3_PRIME M6 & 1 other
2L	19682463	2L_19682463_SNP [dm3] 2L_19682463_SNP [dm6]	A	C	1.400e^-4	0.489	INTRON Lar
3R	8643028	3R_8643028_SNP [dm3] 3R_12817306_SNP [dm6]	T	A	1.400e^-4	0.489	UPSTREAM CG31345 INTERGENIC
2L	20940868	2L_20940868_SNP [dm3] 2L_20940868_SNP [dm6]	A	G	1.402e^-4	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24166672	3R_24166672_SNP [dm3] 3R_28340950_SNP [dm6]	A	C	1.403e^-4	0.489	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12279844	2L_12279844_SNP [dm3] 2L_12279844_SNP [dm6]	G	T	1.407e^-4	0.489	INTRON aret
X	20613604	X_20613604_SNP [dm3] X_20742577_SNP [dm6]	A	G	1.411e^-4	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	9238890	X_9238890_SNP [dm3] X_9344857_SNP [dm6]	C	T	1.412e^-4	0.489	INTRON CG34449
3R	8276232	3R_8276232_SNP [dm3] 3R_12450510_SNP [dm6]	A	T	1.414e^-4	0.489	INTRON CG18549	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19952383	2L_19952383_SNP [dm3] 2L_19952383_SNP [dm6]	C	T	1.418e^-4	0.489	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19679145	2L_19679145_SNP [dm3] 2L_19679145_SNP [dm6]	A	C	1.420e^-4	0.489	INTRON Lar
2R	13859955	2R_13859955_SNP [dm3] 2R_17972450_SNP [dm6]	C	A	1.431e^-4	0.489	INTERGENIC
2R	18439698	2R_18439698_INS [dm3] 2R_22552193_INS [dm6]	A	AA	1.434e^-4	0.489	DOWNSTREAM CG6018 INTRON px
2L	16666880	2L_16666880_SNP [dm3] 2L_16666880_SNP [dm6]	C	T	1.438e^-4	0.489	INTRON Trpgamma
X	12505918	X_12505918_SNP [dm3] X_12611885_SNP [dm6]	A	G	1.444e^-4	0.489	UTR_5_PRIME CG2543 UPSTREAM CG2543 & 1 other DOWNSTREAM CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19068619	2R_19068619_SNP [dm3] 2R_23181096_SNP [dm6]	A	T	1.446e^-4	0.489	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12331171	X_12331171_SNP [dm3] X_12437138_SNP [dm6]	T	G	1.448e^-4	0.489	INTRON Pkcdelta
2L	16760788	2L_16760788_SNP [dm3] 2L_16760788_SNP [dm6]	T	C	1.449e^-4	0.489	UPSTREAM ppk17 INTERGENIC
3L	8004150	3L_8004150_SNP [dm3] 3L_8011050_SNP [dm6]	A	G	1.449e^-4	0.489	INTRON nmo
2R	20361675	2R_20361675_DEL [dm3] 2R_24474152_DEL [dm6]	TT	T	1.452e^-4	0.489	UTR_3_PRIME CG3492 UPSTREAM CG3494 INTRON CG13579	TF binding site mE1_TFBS_HSA
3L	20791767	3L_20791767_SNP [dm3] 3L_20798667_SNP [dm6]	C	A	1.453e^-4	0.489	UTR_5_PRIME CG4365 UPSTREAM CG4365 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2992647	3L_2992647_SNP [dm3] 3L_2992647_SNP [dm6]	A	G	1.457e^-4	0.489	INTERGENIC
3L	21091551	3L_21091551_SNP [dm3] 3L_21098451_SNP [dm6]	G	A	1.458e^-4	0.489	INTRON ko
3L	11340287	3L_11340287_SNP [dm3] 3L_11347187_SNP [dm6]	G	T	1.463e^-4	0.489	INTERGENIC
X	1082843	X_1082843_SNP [dm3] X_1188810_SNP [dm6]	T	G	1.466e^-4	0.489	DOWNSTREAM CG14626 INTERGENIC
2L	13223403	2L_13223403_SNP [dm3] 2L_13223403_SNP [dm6]	C	T	1.466e^-4	0.489	SYNONYMOUS_CODING CG16812 UPSTREAM Ski6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4369802	3L_4369802_SNP [dm3] 3L_4369802_SNP [dm6]	C	T	1.469e^-4	0.489	INTRON DopEcR
X	20604966	X_20604966_SNP [dm3] X_20733939_SNP [dm6]	T	C	1.470e^-4	0.489	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	3368770	3L_3368770_SNP [dm3] 3L_3368770_SNP [dm6]	A	G	1.471e^-4	0.489	UPSTREAM Drs DOWNSTREAM kst INTERGENIC
2L	2674602	2L_2674602_SNP [dm3] 2L_2674602_SNP [dm6]	C	A	1.472e^-4	0.489	INTERGENIC
2R	19224153	2R_19224153_SNP [dm3] 2R_23336630_SNP [dm6]	C	T	1.479e^-4	0.489	INTERGENIC
3L	14470595	3L_14470595_DEL [dm3] 3L_14477495_DEL [dm6]	TCAT	T	1.481e^-4	0.489	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
3L	14910041	3L_14910041_SNP [dm3] 3L_14916941_SNP [dm6]	C	T	1.482e^-4	0.489	INTRON DCX-EMAP
2R	1498626	2R_1498626_SNP [dm3] 2R_5611121_SNP [dm6]	A	C	1.484e^-4	0.489	INTRON CG17508
X	16745018	X_16745018_SNP [dm3] X_16850985_SNP [dm6]	G	A	1.487e^-4	0.489	INTRON CG13003
2L	13950520	2L_13950520_SNP [dm3] 2L_13950520_SNP [dm6]	C	G	1.492e^-4	0.489	INTRON Ance-3
2L	3158345	2L_3158345_SNP [dm3] 2L_3158345_SNP [dm6]	A	G	1.492e^-4	0.489	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	9377085	X_9377085_SNP [dm3] X_9483052_SNP [dm6]	C	T	1.493e^-4	0.489	INTRON mgl
X	13060997	X_13060997_SNP [dm3] X_13166964_SNP [dm6]	T	G	1.503e^-4	0.489	INTRON CG34411
2R	4750745	2R_4750745_SNP [dm3] 2R_8863240_SNP [dm6]	C	T	1.504e^-4	0.489	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3362961	3L_3362961_SNP [dm3] 3L_3362961_SNP [dm6]	C	T	1.505e^-4	0.489	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	17187018	2R_17187018_SNP [dm3] 2R_21299513_SNP [dm6]	G	A	1.511e^-4	0.489	INTRON CG42672
2L	5825323	2L_5825323_SNP [dm3] 2L_5825323_SNP [dm6]	C	T	1.512e^-4	0.489	INTRON TrissinR
3R	21438460	3R_21438460_SNP [dm3] 3R_25612738_SNP [dm6]	A	G	1.512e^-4	0.489	INTRON Npl4
2L	3940730	2L_3940730_SNP [dm3] 2L_3940730_SNP [dm6]	G	A	1.513e^-4	0.489	INTRON fred
3L	2285127	3L_2285127_DEL [dm3] 3L_2285127_DEL [dm6]	ATA	A	1.515e^-4	0.489	INTRON MsR2
X	1073449	X_1073449_SNP [dm3] X_1179416_SNP [dm6]	A	G	1.515e^-4	0.489	UPSTREAM CG11379 INTERGENIC
3L	21088234	3L_21088234_SNP [dm3] 3L_21095134_SNP [dm6]	A	T	1.516e^-4	0.489	INTRON ko
3L	5868476	3L_5868476_SNP [dm3] 3L_5875376_SNP [dm6]	C	T	1.522e^-4	0.49	SYNONYMOUS_CODING CG18586
X	11812928	X_11812928_SNP [dm3] X_11918895_SNP [dm6]	T	C	1.525e^-4	0.49	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
3R	24166590	3R_24166590_SNP [dm3] 3R_28340868_SNP [dm6]	A	T	1.527e^-4	0.49	INTRON Moca-cyp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
X	16745010	X_16745010_SNP [dm3] X_16850977_SNP [dm6]	A	C	1.529e^-4	0.49	INTRON CG13003
3L	9050195	3L_9050195_SNP [dm3] 3L_9057095_SNP [dm6]	C	T	1.537e^-4	0.491	INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	6144393	2L_6144393_SNP [dm3] 2L_6144393_SNP [dm6]	T	C	1.539e^-4	0.491	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_chinmo
3L	12482036	3L_12482036_SNP [dm3] 3L_12488936_SNP [dm6]	T	A	1.542e^-4	0.491	SYNONYMOUS_CODING CG10660
2L	6288539	2L_6288539_DEL [dm3] 2L_6288539_DEL [dm6]	GTATTTCAG	G	1.544e^-4	0.491	INTRON Ddr	TF binding site BDTNP1_TFBS_twi
2L	15134605	2L_15134605_SNP [dm3] 2L_15134605_SNP [dm6]	A	G	1.551e^-4	0.491	INTERGENIC
2L	3411960	2L_3411960_DEL [dm3] 2L_3411960_DEL [dm6]	AATAA	A	1.553e^-4	0.491	DOWNSTREAM CG8840 INTRON pgant2
X	11812930	X_11812930_SNP [dm3] X_11918897_SNP [dm6]	G	A	1.554e^-4	0.491	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
3R	15563012	3R_15563012_SNP [dm3] 3R_19737290_SNP [dm6]	T	G	1.556e^-4	0.491	INTRON GluClalpha
3L	3369037	3L_3369037_SNP [dm3] 3L_3369037_SNP [dm6]	C	A	1.558e^-4	0.491	UPSTREAM Drs DOWNSTREAM kst INTERGENIC	regulatory region REDfly_CRMs
2R	14961210	2R_14961210_SNP [dm3] 2R_19073705_SNP [dm6]	A	T	1.558e^-4	0.491	INTRON 5-HT1A
3L	11307017	3L_11307017_SNP [dm3] 3L_11313917_SNP [dm6]	A	C	1.576e^-4	0.495	DOWNSTREAM CG7573 INTERGENIC
3L	8889770	3L_8889770_SNP [dm3] 3L_8896670_SNP [dm6]	A	T	1.581e^-4	0.495	INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15728153	2R_15728153_SNP [dm3] 2R_19840648_SNP [dm6]	A	G	1.581e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	2673096	2L_2673096_SNP [dm3] 2L_2673096_SNP [dm6]	A	T	1.583e^-4	0.495	DOWNSTREAM Gr23a INTERGENIC
X	3040078	X_3040078_SNP [dm3] X_3146045_SNP [dm6]	C	T	1.588e^-4	0.495	INTRON N
X	9377106	X_9377106_SNP [dm3] X_9483073_SNP [dm6]	G	A	1.589e^-4	0.495	INTRON mgl
3L	6832522	3L_6832522_SNP [dm3] 3L_6839422_SNP [dm6]	G	A	1.591e^-4	0.495	INTERGENIC
2L	14871811	2L_14871811_SNP [dm3] 2L_14871811_SNP [dm6]	A	C	1.594e^-4	0.495	INTRON CG4480
2R	16115408	2R_16115408_SNP [dm3] 2R_20227903_SNP [dm6]	A	T	1.600e^-4	0.495	INTERGENIC
X	20793144	X_20793144_SNP [dm3] X_20922117_SNP [dm6]	G	T	1.602e^-4	0.495	INTRON shakB
2L	15370159	2L_15370159_SNP [dm3] 2L_15370159_SNP [dm6]	A	G	1.604e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19781992	X_19781992_SNP [dm3] X_19887959_SNP [dm6]	A	G	1.605e^-4	0.495	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6096128	3L_6096128_SNP [dm3] 3L_6103028_SNP [dm6]	T	A	1.610e^-4	0.495	INTRON Ets65A
X	2766962	X_2766962_SNP [dm3] X_2872929_SNP [dm6]	C	T	1.612e^-4	0.495	UPSTREAM CG14416 INTRON kirre
2R	11618546	2R_11618546_SNP [dm3] 2R_15731041_SNP [dm6]	G	A	1.613e^-4	0.495	INTRON CG30089	TF binding site mE1_TFBS_HSA
3R	12204032	3R_12204032_SNP [dm3] 3R_16378310_SNP [dm6]	C	T	1.614e^-4	0.495	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_chinmo
X	16745004	X_16745004_SNP [dm3] X_16850971_SNP [dm6]	C	T	1.619e^-4	0.495	INTRON CG13003
3R	25850824	3R_25850824_SNP [dm3] 3R_30025102_SNP [dm6]	T	C	1.621e^-4	0.495	INTRON Axn
3L	18277774	3L_18277774_SNP [dm3] 3L_18284674_SNP [dm6]	A	C	1.623e^-4	0.495	INTERGENIC
3R	16487809	3R_16487809_SNP [dm3] 3R_20662087_SNP [dm6]	G	C	1.624e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12292857	3L_12292857_SNP [dm3] 3L_12299757_SNP [dm6]	C	A	1.633e^-4	0.495	INTERGENIC
3L	7477745	3L_7477745_SNP [dm3] 3L_7484645_SNP [dm6]	G	A	1.638e^-4	0.495	INTERGENIC
2R	11618538	2R_11618538_SNP [dm3] 2R_15731033_SNP [dm6]	A	T	1.639e^-4	0.495	INTRON CG30089	TF binding site mE1_TFBS_HSA
3R	20938513	3R_20938513_SNP [dm3] 3R_25112791_SNP [dm6]	G	C	1.639e^-4	0.495	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
X	1065112	X_1065112_SNP [dm3] X_1171079_SNP [dm6]	G	A	1.645e^-4	0.495	UTR_5_PRIME CG11378 UPSTREAM CG11378	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16382457	2L_16382457_SNP [dm3] 2L_16382457_SNP [dm6]	A	G	1.647e^-4	0.495	INTERGENIC
2L	13680924	2L_13680924_SNP [dm3] 2L_13680924_SNP [dm6]	C	T	1.648e^-4	0.495	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
X	20323094	X_20323094_SNP [dm3] X_20452067_SNP [dm6]	G	T	1.649e^-4	0.495	INTRON CG32506	TF binding site BDTNP1_TFBS_twi
2L	19619840	2L_19619840_SNP [dm3] 2L_19619840_SNP [dm6]	G	T	1.650e^-4	0.495	INTRON Lar
2L	2186247	2L_2186247_SNP [dm3] 2L_2186247_SNP [dm6]	G	A	1.654e^-4	0.495	UPSTREAM tRNA:CR31946 DOWNSTREAM CR43751 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24239301	3R_24239301_SNP [dm3] 3R_28413579_SNP [dm6]	C	A	1.662e^-4	0.495	INTERGENIC
X	20605159	X_20605159_SNP [dm3] X_20734132_SNP [dm6]	A	G	1.664e^-4	0.495	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6403404	2L_6403404_SNP [dm3] 2L_6403404_SNP [dm6]	T	C	1.666e^-4	0.495	INTRON CG42368	TF binding site mE1_TFBS_chinmo
2R	1498638	2R_1498638_SNP [dm3] 2R_5611133_SNP [dm6]	C	A	1.668e^-4	0.495	INTRON CG17508
X	1067709	X_1067709_SNP [dm3] X_1173676_SNP [dm6]	C	T	1.668e^-4	0.495	UTR_3_PRIME CG11378 DOWNSTREAM CG11378 & 1 other
2L	15370173	2L_15370173_SNP [dm3] 2L_15370173_SNP [dm6]	T	C	1.672e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5704627	2R_5704627_SNP [dm3] 2R_9817122_SNP [dm6]	C	T	1.675e^-4	0.495	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
X	1063538	X_1063538_SNP [dm3] X_1169505_SNP [dm6]	T	C	1.675e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25518792	3R_25518792_SNP [dm3] 3R_29693070_SNP [dm6]	C	T	1.679e^-4	0.495	SYNONYMOUS_CODING dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6818451	3L_6818451_SNP [dm3] 3L_6825351_SNP [dm6]	C	T	1.681e^-4	0.495	INTERGENIC
X	7836201	X_7836201_SNP [dm3] X_7942168_SNP [dm6]	A	G	1.687e^-4	0.495	SYNONYMOUS_CODING l_1_G0193 INTRON CG42593	TF binding site mE1_TFBS_sens
2L	16803756	2L_16803756_SNP [dm3] 2L_16803756_SNP [dm6]	A	C	1.689e^-4	0.495	INTRON CG13280
3R	13903006	3R_13903006_SNP [dm3] 3R_18077284_SNP [dm6]	T	G	1.695e^-4	0.495	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	10005895	3L_10005895_SNP [dm3] 3L_10012795_SNP [dm6]	T	G	1.696e^-4	0.495	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3430905	2L_3430905_DEL [dm3] 2L_3430905_DEL [dm6]	TTC	T	1.697e^-4	0.495	INTERGENIC
2R	7887972	2R_7887972_SNP [dm3] 2R_12000467_SNP [dm6]	A	C	1.697e^-4	0.495	INTERGENIC
X	12764570	X_12764570_SNP [dm3] X_12870537_SNP [dm6]	A	C	1.700e^-4	0.495	INTRON Pde9
3R	17864902	3R_17864902_SNP [dm3] 3R_22039180_SNP [dm6]	C	G	1.700e^-4	0.495	DOWNSTREAM pit INTERGENIC
2L	733241	2L_733241_SNP [dm3] 2L_733241_SNP [dm6]	T	C	1.707e^-4	0.495	INTERGENIC
3L	21093703	3L_21093703_SNP [dm3] 3L_21100603_SNP [dm6]	A	G	1.708e^-4	0.495	UPSTREAM ko INTRON ko	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9962008	3R_9962008_SNP [dm3] 3R_14136286_SNP [dm6]	C	T	1.714e^-4	0.495	INTERGENIC
3R	9962010	3R_9962010_DEL [dm3] 3R_14136288_DEL [dm6]	TCACGGTTTCTA...	T	1.714e^-4	0.495	INTERGENIC
2L	4103198	2L_4103198_SNP [dm3] 2L_4103198_SNP [dm6]	C	T	1.715e^-4	0.495	INTRON ed
3L	10910176	3L_10910176_SNP [dm3] 3L_10917076_SNP [dm6]	T	G	1.715e^-4	0.495	INTERGENIC
2L	3158349	2L_3158349_SNP [dm3] 2L_3158349_SNP [dm6]	G	A	1.716e^-4	0.495	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	8950231	X_8950231_SNP [dm3] X_9056198_SNP [dm6]	G	T	1.719e^-4	0.495	SYNONYMOUS_CODING CG15365	TF binding site mE1_TFBS_chinmo
X	12025748	X_12025748_SNP [dm3] X_12131715_SNP [dm6]	A	C	1.719e^-4	0.495	INTRON Ten-a
3R	24695244	3R_24695244_SNP [dm3] 3R_28869522_SNP [dm6]	G	C	1.725e^-4	0.495	NON_SYNONYMOUS_CODING spg UTR_3_PRIME spg
3L	12457375	3L_12457375_SNP [dm3] 3L_12464275_SNP [dm6]	G	A	1.737e^-4	0.495	INTRON eyg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4057661	3L_4057661_SNP [dm3] 3L_4057661_SNP [dm6]	T	C	1.739e^-4	0.495	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5252348	3L_5252348_SNP [dm3] 3L_5259248_SNP [dm6]	C	G	1.739e^-4	0.495	INTRON shep
3L	6818388	3L_6818388_SNP [dm3] 3L_6825288_SNP [dm6]	T	C	1.747e^-4	0.495	INTERGENIC
X	4503674	X_4503674_SNP [dm3] X_4609641_SNP [dm6]	A	G	1.750e^-4	0.495	INTRON CR32773	TF binding site BDTNP1_TFBS_twi
3L	10189669	3L_10189669_SNP [dm3] 3L_10196569_SNP [dm6]	A	C	1.751e^-4	0.495	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16115434	2R_16115434_SNP [dm3] 2R_20227929_SNP [dm6]	G	A	1.754e^-4	0.495	INTERGENIC
2L	15330368	2L_15330368_SNP [dm3] 2L_15330368_SNP [dm6]	C	A	1.756e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	3109651	2L_3109651_SNP [dm3] 2L_3109651_SNP [dm6]	C	T	1.762e^-4	0.495	UPSTREAM PpD6 INTRON toc
X	1068064	X_1068064_SNP [dm3] X_1174031_SNP [dm6]	C	A	1.766e^-4	0.495	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
3L	6096134	3L_6096134_SNP [dm3] 3L_6103034_SNP [dm6]	T	G	1.767e^-4	0.495	INTRON Ets65A
3L	8696669	3L_8696669_SNP [dm3] 3L_8703569_SNP [dm6]	T	C	1.772e^-4	0.495	INTERGENIC
2L	14652479	2L_14652479_SNP [dm3] 2L_14652479_SNP [dm6]	T	C	1.772e^-4	0.495	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15318224	2L_15318224_SNP [dm3] 2L_15318224_SNP [dm6]	C	T	1.774e^-4	0.495	NON_SYNONYMOUS_CODING nht
X	13685410	X_13685410_DEL [dm3] X_13791377_DEL [dm6]	AGAA	A	1.774e^-4	0.495	UPSTREAM CG10993 INTRON inaE
X	8555899	X_8555899_SNP [dm3] X_8661866_SNP [dm6]	T	A	1.774e^-4	0.495	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16950515	2R_16950515_SNP [dm3] 2R_21063010_SNP [dm6]	G	A	1.782e^-4	0.495	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo
X	13092885	X_13092885_SNP [dm3] X_13198852_SNP [dm6]	G	A	1.783e^-4	0.495	SYNONYMOUS_CODING sno
2L	2958467	2L_2958467_SNP [dm3] 2L_2958467_SNP [dm6]	G	A	1.784e^-4	0.495	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12764186	X_12764186_SNP [dm3] X_12870153_SNP [dm6]	T	G	1.787e^-4	0.495	INTRON Pde9
3L	20791538	3L_20791538_SNP [dm3] 3L_20798438_SNP [dm6]	C	T	1.788e^-4	0.495	UPSTREAM CG4365 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12481643	3L_12481643_SNP [dm3] 3L_12488543_SNP [dm6]	G	T	1.789e^-4	0.495	INTRON CG10660
3R	13460904	3R_13460904_SNP [dm3] 3R_17635182_SNP [dm6]	T	C	1.789e^-4	0.495	INTRON CG43175
2R	18790177	2R_18790177_SNP [dm3] 2R_22902654_SNP [dm6]	T	C	1.790e^-4	0.495	INTRON nahoda
3L	9817661	3L_9817661_SNP [dm3] 3L_9824561_SNP [dm6]	T	C	1.790e^-4	0.495	SYNONYMOUS_CODING CG43897 UPSTREAM Ilp5
2R	1415648	2R_1415648_SNP [dm3] 2R_5528143_SNP [dm6]	A	T	1.795e^-4	0.496	INTRON CG30438	transposable element FlyBase
X	1070111	X_1070111_SNP [dm3] X_1176078_SNP [dm6]	G	A	1.801e^-4	0.496	UPSTREAM CG11384 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17591880	3L_17591880_DEL [dm3] 3L_17598780_DEL [dm6]	AC	A	1.803e^-4	0.496	INTRON Eip74EF
3R	24082014	3R_24082014_SNP [dm3] 3R_28256292_SNP [dm6]	G	T	1.806e^-4	0.496	INTERGENIC
2L	9313754	2L_9313754_SNP [dm3] 2L_9313754_SNP [dm6]	T	C	1.810e^-4	0.496	INTERGENIC
X	1063386	X_1063386_SNP [dm3] X_1169353_SNP [dm6]	T	G	1.812e^-4	0.496	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16115397	2R_16115397_SNP [dm3] 2R_20227892_SNP [dm6]	A	C	1.812e^-4	0.496	INTERGENIC
X	13185865	X_13185865_SNP [dm3] X_13291832_SNP [dm6]	C	T	1.812e^-4	0.496	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13201229	3L_13201229_SNP [dm3] 3L_13208129_SNP [dm6]	A	T	1.816e^-4	0.496	DOWNSTREAM CR45096 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16878613	2L_16878613_SNP [dm3] 2L_16878613_SNP [dm6]	T	C	1.826e^-4	0.496	SYNONYMOUS_CODING CG32832 UPSTREAM CG31743 & 1 other DOWNSTREAM CR31781	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21500008	3L_21500008_SNP [dm3] 3L_21506908_SNP [dm6]	A	G	1.833e^-4	0.496	SYNONYMOUS_CODING Glg1 UPSTREAM M6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	6818391	3L_6818391_SNP [dm3] 3L_6825291_SNP [dm6]	T	C	1.836e^-4	0.496	INTERGENIC
3L	12456062	3L_12456062_INS [dm3] 3L_12462962_INS [dm6]	T	TTG	1.839e^-4	0.496	UTR_3_PRIME eyg DOWNSTREAM eyg
3R	15462327	3R_15462327_SNP [dm3] 3R_19636605_SNP [dm6]	T	G	1.841e^-4	0.496	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
2L	8500035	2L_8500035_DEL [dm3] 2L_8500035_DEL [dm6]	TTTGATGTTCAAACCA...	T	1.844e^-4	0.496	INTRON Dh31
3L	11340305	3L_11340305_INS [dm3] 3L_11347205_INS [dm6]	T	TACTTCAGGTGCACTT...	1.844e^-4	0.496	INTERGENIC
X	10001368	X_10001368_SNP [dm3] X_10107335_SNP [dm6]	T	C	1.847e^-4	0.496	INTRON RhoU
X	10001546	X_10001546_SNP [dm3] X_10107513_SNP [dm6]	T	C	1.857e^-4	0.496	INTRON RhoU
X	9325449	X_9325449_SNP [dm3] X_9431416_SNP [dm6]	A	G	1.859e^-4	0.496	INTRON mgl
X	11034445	X_11034445_SNP [dm3] X_11140412_SNP [dm6]	A	G	1.868e^-4	0.496	UPSTREAM CG32667 DOWNSTREAM CG15199 & 1 other EXON CR44054
2R	6979511	2R_6979511_SNP [dm3] 2R_11092006_SNP [dm6]	C	T	1.869e^-4	0.496	INTRON luna	TF binding site BDTNP1_TFBS_dl
2R	1498637	2R_1498637_SNP [dm3] 2R_5611132_SNP [dm6]	A	C	1.870e^-4	0.496	INTRON CG17508
3R	22238284	3R_22238284_SNP [dm3] 3R_26412562_SNP [dm6]	A	G	1.870e^-4	0.496	INTERGENIC
X	11242184	X_11242184_SNP [dm3] X_11348151_SNP [dm6]	G	A	1.871e^-4	0.496	UTR_5_PRIME CG11756 UPSTREAM CG1597 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	17483852	2R_17483852_INS [dm3] 2R_21596347_INS [dm6]	C	CC	1.872e^-4	0.496	INTERGENIC
3L	10602240	3L_10602240_SNP [dm3] 3L_10609140_SNP [dm6]	T	C	1.874e^-4	0.496	INTERGENIC
2R	13753977	2R_13753977_SNP [dm3] 2R_17866472_SNP [dm6]	A	G	1.876e^-4	0.496	UTR_3_PRIME Mapmodulin UPSTREAM thr DOWNSTREAM Mapmodulin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	15531961	2R_15531961_SNP [dm3] 2R_19644456_SNP [dm6]	A	G	1.878e^-4	0.496	DOWNSTREAM CG15124 INTERGENIC
2L	6204575	2L_6204575_SNP [dm3] 2L_6204575_SNP [dm6]	C	T	1.883e^-4	0.496	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	15437281	2R_15437281_SNP [dm3] 2R_19549776_SNP [dm6]	A	T	1.883e^-4	0.496	INTRON sm
3R	15461658	3R_15461658_SNP [dm3] 3R_19635936_SNP [dm6]	A	G	1.883e^-4	0.496	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
X	20605095	X_20605095_SNP [dm3] X_20734068_SNP [dm6]	T	C	1.886e^-4	0.496	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16105714	2R_16105714_SNP [dm3] 2R_20218209_SNP [dm6]	T	A	1.889e^-4	0.496	INTERGENIC
3L	21517154	3L_21517154_SNP [dm3] 3L_21524054_SNP [dm6]	T	C	1.891e^-4	0.496	UTR_5_PRIME CG7611 INTRON CG7611	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	16582486	2L_16582486_SNP [dm3] 2L_16582486_SNP [dm6]	T	A	1.893e^-4	0.496	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	9946942	2L_9946942_SNP [dm3] 2L_9946942_SNP [dm6]	A	T	1.893e^-4	0.496	INTRON CG5853
2L	10105551	2L_10105551_SNP [dm3] 2L_10105551_SNP [dm6]	T	G	1.897e^-4	0.496	INTRON CG44153 & 1 other
X	5142007	X_5142007_SNP [dm3] X_5247974_SNP [dm6]	T	C	1.899e^-4	0.496	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3899200	2L_3899200_SNP [dm3] 2L_3899200_SNP [dm6]	G	A	1.905e^-4	0.496	INTRON capu
2L	3940832	2L_3940832_SNP [dm3] 2L_3940832_SNP [dm6]	T	C	1.910e^-4	0.496	INTRON fred
2L	12644697	2L_12644697_SNP [dm3] 2L_12644697_SNP [dm6]	T	C	1.913e^-4	0.496	INTRON Ref2
X	22021922	X_22021922_SNP [dm3] X_22620086_SNP [dm6]	A	G	1.914e^-4	0.496	INTRON Cda4
2L	6254651	2L_6254651_INS [dm3] 2L_6254651_INS [dm6]	A	AGAG	1.914e^-4	0.496	INTRON Ddr
X	7836516	X_7836516_SNP [dm3] X_7942483_SNP [dm6]	A	T	1.918e^-4	0.496	INTRON CG42593 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	14971666	3L_14971666_SNP [dm3] 3L_14978566_SNP [dm6]	T	C	1.919e^-4	0.496	UPSTREAM CR43432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	16886682	2L_16886682_SNP [dm3] 2L_16886682_SNP [dm6]	G	T	1.920e^-4	0.496	DOWNSTREAM CG6115 & 2 others INTERGENIC
3R	25550116	3R_25550116_SNP [dm3] 3R_29724394_SNP [dm6]	T	G	1.922e^-4	0.496	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	1063302	X_1063302_SNP [dm3] X_1169269_SNP [dm6]	G	A	1.925e^-4	0.496	INTERGENIC
2L	5878475	2L_5878475_INS [dm3] 2L_5878475_INS [dm6]	G	GA	1.926e^-4	0.496	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16837210	2L_16837210_SNP [dm3] 2L_16837210_SNP [dm6]	C	A	1.932e^-4	0.496	NON_SYNONYMOUS_CODING CG13283 UPSTREAM SclB & 1 other
2L	16837211	2L_16837211_SNP [dm3] 2L_16837211_SNP [dm6]	C	A	1.932e^-4	0.496	NON_SYNONYMOUS_CODING CG13283 UPSTREAM SclB & 1 other
2L	5710189	2L_5710189_SNP [dm3] 2L_5710189_SNP [dm6]	T	A	1.933e^-4	0.496	INTRON CG7236
2R	10422286	2R_10422286_SNP [dm3] 2R_14534781_SNP [dm6]	A	T	1.935e^-4	0.496	INTRON ttv
2R	18516152	2R_18516152_SNP [dm3] 2R_22628647_SNP [dm6]	C	T	1.935e^-4	0.496	INTRON CG33143
3R	24625503	3R_24625503_SNP [dm3] 3R_28799781_SNP [dm6]	G	A	1.941e^-4	0.497	INTERGENIC
X	20612020	X_20612020_SNP [dm3] X_20740993_SNP [dm6]	T	C	1.946e^-4	0.497	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	20618518	3L_20618518_SNP [dm3] 3L_20625418_SNP [dm6]	A	G	1.947e^-4	0.497	UPSTREAM CR44684 INTERGENIC
3L	20770868	3L_20770868_SNP [dm3] 3L_20777768_SNP [dm6]	G	A	1.952e^-4	0.498	SYNONYMOUS_CODING Pex16 DOWNSTREAM Pitslre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	16776102	2L_16776102_DEL [dm3] 2L_16776102_DEL [dm6]	AAC	T	1.957e^-4	0.498	INTRON Mhc
3L	8696654	3L_8696654_SNP [dm3] 3L_8703554_SNP [dm6]	C	T	1.958e^-4	0.498	INTERGENIC
X	7121181	X_7121181_SNP [dm3] X_7227148_SNP [dm6]	G	A	1.961e^-4	0.498	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19972670	2R_19972670_SNP [dm3] 2R_24085147_SNP [dm6]	G	A	1.971e^-4	0.498	SYNONYMOUS_CODING CG16786
3L	3782548	3L_3782548_SNP [dm3] 3L_3782548_SNP [dm6]	G	A	1.972e^-4	0.498	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16618245	2L_16618245_DEL [dm3] 2L_16618245_DEL [dm6]	TCC	GA	1.974e^-4	0.498	INTRON CG42389
2R	2780747	2R_2780747_SNP [dm3] 2R_6893242_SNP [dm6]	A	G	1.980e^-4	0.498	INTRON CG30158
2L	16950780	2L_16950780_SNP [dm3] 2L_16950780_SNP [dm6]	T	G	1.981e^-4	0.498	UPSTREAM CR44393 INTERGENIC
3R	25674864	3R_25674864_SNP [dm3] 3R_29849142_SNP [dm6]	C	T	1.983e^-4	0.498	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad
3L	8691876	3L_8691876_SNP [dm3] 3L_8698776_SNP [dm6]	C	G	1.985e^-4	0.498	INTERGENIC
3L	11340270	3L_11340270_SNP [dm3] 3L_11347170_SNP [dm6]	G	A	1.986e^-4	0.498	INTERGENIC
3R	9777118	3R_9777118_SNP [dm3] 3R_13951396_SNP [dm6]	T	G	1.988e^-4	0.498	UPSTREAM CG9926 INTERGENIC
2L	17746494	2L_17746494_SNP [dm3] 2L_17746494_SNP [dm6]	A	C	1.993e^-4	0.499	INTRON CadN	TF binding site mE1_TFBS_cnc
X	1075197	X_1075197_SNP [dm3] X_1181164_SNP [dm6]	T	C	2.004e^-4	0.499	UTR_3_PRIME CG11379 UPSTREAM CG14627 DOWNSTREAM CG11379	TF binding site mE1_TFBS_chinmo
2R	7025081	2R_7025081_SNP [dm3] 2R_11137576_SNP [dm6]	C	A	2.014e^-4	0.499	INTRON BBS4
X	20681419	X_20681419_SNP [dm3] X_20810392_SNP [dm6]	A	G	2.018e^-4	0.499	INTRON shakB
2L	16765250	2L_16765250_SNP [dm3] 2L_16765250_SNP [dm6]	A	G	2.021e^-4	0.499	INTERGENIC	regulatory region REDfly_CRMs
3R	8632896	3R_8632896_SNP [dm3] 3R_12807174_SNP [dm6]	C	A	2.023e^-4	0.499	INTERGENIC
X	19317141	X_19317141_SNP [dm3] X_19423108_SNP [dm6]	T	C	2.024e^-4	0.499	INTRON kek5
X	20604898	X_20604898_SNP [dm3] X_20733871_SNP [dm6]	C	G	2.026e^-4	0.499	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	25794183	3R_25794183_SNP [dm3] 3R_29968461_SNP [dm6]	G	C	2.030e^-4	0.499	INTRON TkR99D
2L	11772133	2L_11772133_SNP [dm3] 2L_11772133_SNP [dm6]	A	T	2.031e^-4	0.499	INTERGENIC
2L	11772145	2L_11772145_SNP [dm3] 2L_11772145_SNP [dm6]	A	G	2.031e^-4	0.499	INTERGENIC
X	1069581	X_1069581_SNP [dm3] X_1175548_SNP [dm6]	T	C	2.043e^-4	0.499	NON_SYNONYMOUS_CODING CG11384	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19650888	2L_19650888_SNP [dm3] 2L_19650888_SNP [dm6]	A	G	2.046e^-4	0.499	INTRON Lar
3R	14786665	3R_14786665_SNP [dm3] 3R_18960943_SNP [dm6]	C	G	2.052e^-4	0.499	INTRON CG42613 & 1 other
3R	20440372	3R_20440372_INS [dm3] 3R_24614650_INS [dm6]	T	TG	2.052e^-4	0.499	INTRON mld
2L	13694421	2L_13694421_DEL [dm3] 2L_13694421_DEL [dm6]	TGTCTAGCT	T	2.053e^-4	0.499	INTRON CG31814
2R	19626270	2R_19626270_SNP [dm3] 2R_23738747_SNP [dm6]	G	A	2.054e^-4	0.499	SYNONYMOUS_CODING egl	TF binding site mE1_TFBS_chinmo
2R	19224432	2R_19224432_SNP [dm3] 2R_23336909_SNP [dm6]	G	A	2.056e^-4	0.499	INTERGENIC
3L	12291791	3L_12291791_SNP [dm3] 3L_12298691_SNP [dm6]	A	T	2.057e^-4	0.499	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20947365	2R_20947365_SNP [dm3] 2R_25059842_SNP [dm6]	T	C	2.058e^-4	0.499	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	11674094	X_11674094_SNP [dm3] X_11780061_SNP [dm6]	A	T	2.063e^-4	0.499	INTERGENIC
3R	27068931	3R_27068931_INS [dm3] 3R_31243209_INS [dm6]	A	AA	2.064e^-4	0.499	INTRON qless
X	7814022	X_7814022_SNP [dm3] X_7919989_SNP [dm6]	C	G	2.065e^-4	0.499	NON_SYNONYMOUS_CODING hdm UPSTREAM Ykt6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26651755	3R_26651755_SNP [dm3] 3R_30826033_SNP [dm6]	G	T	2.068e^-4	0.499	SPLICE_SITE_REGION cindr SYNONYMOUS_CODING cindr INTRON cindr
2R	16115415	2R_16115415_SNP [dm3] 2R_20227910_SNP [dm6]	A	C	2.071e^-4	0.499	INTERGENIC
3L	14048711	3L_14048711_SNP [dm3] 3L_14055611_SNP [dm6]	C	A	2.072e^-4	0.499	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1068041	X_1068041_SNP [dm3] X_1174008_SNP [dm6]	C	T	2.073e^-4	0.499	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
X	4385867	X_4385867_SNP [dm3] X_4491834_SNP [dm6]	A	T	2.074e^-4	0.499	INTRON CR32773	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15898089	3R_15898089_SNP [dm3] 3R_20072367_SNP [dm6]	A	G	2.074e^-4	0.499	INTERGENIC
3L	10189668	3L_10189668_SNP [dm3] 3L_10196568_SNP [dm6]	C	T	2.076e^-4	0.499	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20606349	X_20606349_SNP [dm3] X_20735322_SNP [dm6]	C	T	2.076e^-4	0.499	SYNONYMOUS_CODING CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2388647	3L_2388647_SNP [dm3] 3L_2388647_SNP [dm6]	A	C	2.077e^-4	0.499	UTR_5_PRIME CG45186 UPSTREAM CG42787 DOWNSTREAM CG32299 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13220137	2L_13220137_SNP [dm3] 2L_13220137_SNP [dm6]	T	C	2.089e^-4	0.499	SYNONYMOUS_CODING CG5705 UPSTREAM CG9426	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	19961038	2L_19961038_SNP [dm3] 2L_19961038_SNP [dm6]	G	A	2.090e^-4	0.499	UPSTREAM CG34051 DOWNSTREAM CoIV & 2 others INTERGENIC
2L	19961040	2L_19961040_SNP [dm3] 2L_19961040_SNP [dm6]	G	A	2.090e^-4	0.499	UPSTREAM CG34051 DOWNSTREAM CoIV & 2 others INTERGENIC
3L	6832523	3L_6832523_SNP [dm3] 3L_6839423_SNP [dm6]	G	A	2.091e^-4	0.499	INTERGENIC
2L	3940765	2L_3940765_SNP [dm3] 2L_3940765_SNP [dm6]	C	T	2.096e^-4	0.499	INTRON fred
3L	20856923	3L_20856923_SNP [dm3] 3L_20863823_SNP [dm6]	A	G	2.099e^-4	0.499	INTRON CG32432
2R	2726990	2R_2726990_SNP [dm3] 2R_6839485_SNP [dm6]	G	T	2.105e^-4	0.499	UPSTREAM CG9445 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25791628	3R_25791628_SNP [dm3] 3R_29965906_SNP [dm6]	T	A	2.111e^-4	0.499	INTRON TkR99D
X	3727521	X_3727521_SNP [dm3] X_3833488_SNP [dm6]	A	T	2.114e^-4	0.499	INTRON ec	TF binding site mE1_TFBS_chinmo
3R	6816761	3R_6816761_SNP [dm3] 3R_10991039_SNP [dm6]	C	T	2.115e^-4	0.499	INTRON CG34114
3L	3361596	3L_3361596_SNP [dm3] 3L_3361596_SNP [dm6]	C	A	2.116e^-4	0.499	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	3360060	3L_3360060_SNP [dm3] 3L_3360060_SNP [dm6]	T	A	2.120e^-4	0.499	SYNONYMOUS_CODING kst
X	16745015	X_16745015_SNP [dm3] X_16850982_SNP [dm6]	C	T	2.122e^-4	0.499	INTRON CG13003
2L	6396332	2L_6396332_SNP [dm3] 2L_6396332_SNP [dm6]	A	G	2.122e^-4	0.499	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13928735	2R_13928735_SNP [dm3] 2R_18041230_SNP [dm6]	T	A	2.124e^-4	0.499	INTERGENIC
X	7057159	X_7057159_SNP [dm3] X_7163126_SNP [dm6]	A	G	2.127e^-4	0.499	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	13685511	X_13685511_SNP [dm3] X_13791478_SNP [dm6]	A	T	2.128e^-4	0.499	UPSTREAM CG10993 INTRON inaE
2R	16275175	2R_16275175_SNP [dm3] 2R_20387670_SNP [dm6]	T	A	2.130e^-4	0.499	INTERGENIC
3R	15113030	3R_15113030_SNP [dm3] 3R_19287308_SNP [dm6]	G	C	2.135e^-4	0.499	INTERGENIC
3L	10602231	3L_10602231_SNP [dm3] 3L_10609131_SNP [dm6]	C	A	2.136e^-4	0.499	INTERGENIC
3R	16579206	3R_16579206_SNP [dm3] 3R_20753484_SNP [dm6]	C	A	2.140e^-4	0.499	INTRON CG42322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3411889	3L_3411889_SNP [dm3] 3L_3411889_SNP [dm6]	T	A	2.141e^-4	0.499	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	15370099	2L_15370099_SNP [dm3] 2L_15370099_SNP [dm6]	G	A	2.144e^-4	0.499	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15535313	2R_15535313_SNP [dm3] 2R_19647808_SNP [dm6]	T	G	2.148e^-4	0.499	UPSTREAM CG15905 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12723988	2R_12723988_SNP [dm3] 2R_16836483_SNP [dm6]	T	G	2.152e^-4	0.499	EXON CR43650
2L	10428641	2L_10428641_SNP [dm3] 2L_10428641_SNP [dm6]	C	T	2.157e^-4	0.499	UPSTREAM CG5188 DOWNSTREAM KdelR INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2803527	3L_2803527_SNP [dm3] 3L_2803527_SNP [dm6]	G	T	2.163e^-4	0.499	INTRON CG43444
X	8990361	X_8990361_SNP [dm3] X_9096328_SNP [dm6]	T	G	2.163e^-4	0.499	INTRON CG7766
2L	11839293	2L_11839293_SNP [dm3] 2L_11839293_SNP [dm6]	C	A	2.164e^-4	0.499	UPSTREAM Sfp33A3 DOWNSTREAM CR43937 INTRON Pde1c
3L	14470153	3L_14470153_SNP [dm3] 3L_14477053_SNP [dm6]	T	C	2.170e^-4	0.499	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11554899	X_11554899_SNP [dm3] X_11660866_SNP [dm6]	G	A	2.172e^-4	0.499	INTRON Ptp10D
3L	12282909	3L_12282909_SNP [dm3] 3L_12289809_SNP [dm6]	T	C	2.179e^-4	0.499	EXON CR45658
X	14465394	X_14465394_SNP [dm3] X_14571361_SNP [dm6]	A	C	2.180e^-4	0.499	INTERGENIC
X	12445482	X_12445482_SNP [dm3] X_12551449_SNP [dm6]	G	A	2.181e^-4	0.499	INTRON CG43921
3L	9049947	3L_9049947_SNP [dm3] 3L_9056847_SNP [dm6]	T	C	2.182e^-4	0.499	INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	5643330	2L_5643330_SNP [dm3] 2L_5643330_SNP [dm6]	A	G	2.185e^-4	0.499	INTRON CG31646
2R	15534602	2R_15534602_INS [dm3] 2R_19647097_INS [dm6]	T	TGAGCTA	2.186e^-4	0.499		TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8500034	2L_8500034_SNP [dm3] 2L_8500034_SNP [dm6]	G	A	2.190e^-4	0.499	INTRON Dh31
3L	12482930	3L_12482930_SNP [dm3] 3L_12489830_SNP [dm6]	C	T	2.190e^-4	0.499	NON_SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3367100	3L_3367100_SNP [dm3] 3L_3367100_SNP [dm6]	C	A	2.191e^-4	0.499	INTRON kst	TF binding site mE1_TFBS_cad
3L	6818432	3L_6818432_SNP [dm3] 3L_6825332_SNP [dm6]	A	G	2.191e^-4	0.499	INTERGENIC
3L	20841910	3L_20841910_SNP [dm3] 3L_20848810_SNP [dm6]	G	T	2.192e^-4	0.499	INTRON CG32432
2L	19639723	2L_19639723_SNP [dm3] 2L_19639723_SNP [dm6]	G	T	2.194e^-4	0.499	INTRON Lar	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	25811880	3R_25811880_SNP [dm3] 3R_29986158_SNP [dm6]	G	A	2.195e^-4	0.499	INTRON CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	21084574	3L_21084574_SNP [dm3] 3L_21091474_SNP [dm6]	T	C	2.202e^-4	0.499	INTRON ko
2R	18204615	2R_18204615_SNP [dm3] 2R_22317110_SNP [dm6]	G	C	2.203e^-4	0.499	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10289254	3L_10289254_SNP [dm3] 3L_10296154_SNP [dm6]	C	T	2.206e^-4	0.499	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7058887	X_7058887_SNP [dm3] X_7164854_SNP [dm6]	C	T	2.207e^-4	0.499	INTRON CG9650
2L	3467827	2L_3467827_SNP [dm3] 2L_3467827_SNP [dm6]	C	G	2.207e^-4	0.499	UTR_3_PRIME CG3238 DOWNSTREAM Pdsw
2L	16772306	2L_16772306_SNP [dm3] 2L_16772306_SNP [dm6]	C	T	2.208e^-4	0.499	INTRON Mhc
3R	6377929	3R_6377929_SNP [dm3] 3R_10552207_SNP [dm6]	A	C	2.210e^-4	0.499	INTRON hth
2R	19451970	2R_19451970_SNP [dm3] 2R_23564447_SNP [dm6]	C	A	2.212e^-4	0.499	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13185764	X_13185764_SNP [dm3] X_13291731_SNP [dm6]	C	T	2.228e^-4	0.502	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25791627	3R_25791627_SNP [dm3] 3R_29965905_SNP [dm6]	G	A	2.233e^-4	0.502	INTRON TkR99D
2L	10061502	2L_10061502_SNP [dm3] 2L_10061502_SNP [dm6]	T	C	2.241e^-4	0.502	INTRON Spn31A
2R	17512471	2R_17512471_SNP [dm3] 2R_21624966_SNP [dm6]	G	T	2.242e^-4	0.502	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11772144	2L_11772144_SNP [dm3] 2L_11772144_SNP [dm6]	C	A	2.247e^-4	0.502	INTERGENIC
3R	9942685	3R_9942685_SNP [dm3] 3R_14116963_SNP [dm6]	G	C	2.250e^-4	0.502	INTRON Kif19A
2R	17159357	2R_17159357_SNP [dm3] 2R_21271852_SNP [dm6]	G	A	2.253e^-4	0.502	INTRON Rgk3
3R	26403349	3R_26403349_SNP [dm3] 3R_30577627_SNP [dm6]	A	G	2.257e^-4	0.502	INTRON tmod
3L	2992688	3L_2992688_SNP [dm3] 3L_2992688_SNP [dm6]	C	T	2.257e^-4	0.502	INTERGENIC
3R	18755615	3R_18755615_SNP [dm3] 3R_22929893_SNP [dm6]	G	A	2.261e^-4	0.502	INTRON klg
3R	13611066	3R_13611066_SNP [dm3] 3R_17785344_SNP [dm6]	T	A	2.265e^-4	0.502	INTRON CG43102
3L	14269081	3L_14269081_SNP [dm3] 3L_14275981_SNP [dm6]	T	G	2.268e^-4	0.502	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11140624	3R_11140624_SNP [dm3] 3R_15314902_SNP [dm6]	T	G	2.271e^-4	0.502	UTR_3_PRIME Tm2 DOWNSTREAM Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7059080	X_7059080_SNP [dm3] X_7165047_SNP [dm6]	C	T	2.272e^-4	0.502	INTRON CG9650
3R	9962100	3R_9962100_DEL [dm3] 3R_14136378_DEL [dm6]	AACTACA	A	2.276e^-4	0.502	INTERGENIC
2R	18883029	2R_18883029_SNP [dm3] 2R_22995506_SNP [dm6]	C	T	2.281e^-4	0.502	SYNONYMOUS_CODING CG9896 INTRON twi
3R	5197775	3R_5197775_INS [dm3] 3R_9372053_INS [dm6]	C	CTTTTCCTCTTCC...	2.282e^-4	0.502	CODON_INSERTION FER UPSTREAM FER INTRON FER
X	16742666	X_16742666_SNP [dm3] X_16848633_SNP [dm6]	T	A	2.284e^-4	0.502	NON_SYNONYMOUS_CODING CG13003	TF binding site mE1_TFBS_chinmo
2L	16715216	2L_16715216_SNP [dm3] 2L_16715216_SNP [dm6]	C	T	2.288e^-4	0.502	UPSTREAM Cyt-c-d INTRON CG31808	TF binding site mE1_TFBS_Trl
3L	10204332	3L_10204332_SNP [dm3] 3L_10211232_SNP [dm6]	C	A	2.289e^-4	0.502	INTERGENIC
2R	16277479	2R_16277479_SNP [dm3] 2R_20389974_SNP [dm6]	A	G	2.292e^-4	0.502	INTERGENIC
3R	14863248	3R_14863248_SNP [dm3] 3R_19037526_SNP [dm6]	T	G	2.303e^-4	0.502	INTRON CG6026
2L	3796820	2L_3796820_SNP [dm3] 2L_3796820_SNP [dm6]	G	A	2.307e^-4	0.502	SYNONYMOUS_CODING CG3921
2L	2023630	2L_2023630_SNP [dm3] 2L_2023630_SNP [dm6]	C	T	2.317e^-4	0.502	UPSTREAM CG4238 INTRON CG4238
2L	13220123	2L_13220123_SNP [dm3] 2L_13220123_SNP [dm6]	T	A	2.320e^-4	0.502	NON_SYNONYMOUS_CODING CG5705 UPSTREAM CG9426	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	10005899	3L_10005899_SNP [dm3] 3L_10012799_SNP [dm6]	G	T	2.322e^-4	0.502	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6583125	2L_6583125_SNP [dm3] 2L_6583125_SNP [dm6]	G	C	2.324e^-4	0.502	INTRON CG11319	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19783727	X_19783727_SNP [dm3] X_19889694_SNP [dm6]	A	G	2.325e^-4	0.502	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	18439695	2R_18439695_SNP [dm3] 2R_22552190_SNP [dm6]	T	C	2.326e^-4	0.502	DOWNSTREAM CG6018 INTRON px
3L	6818454	3L_6818454_SNP [dm3] 3L_6825354_SNP [dm6]	C	A	2.335e^-4	0.502	INTERGENIC
3R	25519255	3R_25519255_SNP [dm3] 3R_29693533_SNP [dm6]	C	G	2.336e^-4	0.502	SYNONYMOUS_CODING dmrt99B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20613360	X_20613360_SNP [dm3] X_20742333_SNP [dm6]	T	C	2.336e^-4	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	1057988	X_1057988_SNP [dm3] X_1163955_SNP [dm6]	G	A	2.336e^-4	0.502	SYNONYMOUS_CODING CG34320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7520935	2L_7520935_SNP [dm3] 2L_7520935_SNP [dm6]	T	C	2.337e^-4	0.502	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2816512	2L_2816512_SNP [dm3] 2L_2816512_SNP [dm6]	T	G	2.337e^-4	0.502	UPSTREAM CG15400 INTRON Duox	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23335105	3R_23335105_SNP [dm3] 3R_27509383_SNP [dm6]	G	C	2.337e^-4	0.502	INTERGENIC
3R	26980209	3R_26980209_SNP [dm3] 3R_31154487_SNP [dm6]	C	T	2.338e^-4	0.502	INTRON Gycbeta100B
2L	8623259	2L_8623259_SNP [dm3] 2L_8623259_SNP [dm6]	C	G	2.342e^-4	0.502	INTRON Sema-1a
X	1068016	X_1068016_SNP [dm3] X_1173983_SNP [dm6]	G	A	2.349e^-4	0.502	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
X	18429264	X_18429264_DEL [dm3] X_18535231_DEL [dm6]	TCT	T	2.349e^-4	0.502	SPLICE_SITE_REGION Bx UTR_5_PRIME Bx INTRON Bx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26959871	3R_26959871_SNP [dm3] 3R_31134149_SNP [dm6]	T	A	2.350e^-4	0.502	UPSTREAM Gycbeta100B INTERGENIC
2L	8673780	2L_8673780_SNP [dm3] 2L_8673780_SNP [dm6]	C	A	2.353e^-4	0.502	SYNONYMOUS_CODING Glt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18439693	2R_18439693_SNP [dm3] 2R_22552188_SNP [dm6]	A	T	2.355e^-4	0.502	DOWNSTREAM CG6018 INTRON px
2R	4807317	2R_4807317_SNP [dm3] 2R_8919812_SNP [dm6]	G	T	2.356e^-4	0.502	SYNONYMOUS_CODING CG8248 UPSTREAM CG34219 DOWNSTREAM Spt
2L	1514507	2L_1514507_SNP [dm3] 2L_1514507_SNP [dm6]	G	T	2.357e^-4	0.502	INTERGENIC
3L	10257533	3L_10257533_SNP [dm3] 3L_10264433_SNP [dm6]	C	A	2.367e^-4	0.502	NON_SYNONYMOUS_CODING can
2R	18204674	2R_18204674_SNP [dm3] 2R_22317169_SNP [dm6]	G	C	2.372e^-4	0.502	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7170492	2L_7170492_SNP [dm3] 2L_7170492_SNP [dm6]	A	G	2.385e^-4	0.502	INTERGENIC
3L	3368436	3L_3368436_SNP [dm3] 3L_3368436_SNP [dm6]	T	G	2.396e^-4	0.502	DOWNSTREAM kst INTERGENIC
2R	16115398	2R_16115398_SNP [dm3] 2R_20227893_SNP [dm6]	A	G	2.399e^-4	0.502	INTERGENIC
3L	8691884	3L_8691884_SNP [dm3] 3L_8698784_SNP [dm6]	C	A	2.404e^-4	0.502	INTERGENIC
2L	9923405	2L_9923405_SNP [dm3] 2L_9923405_SNP [dm6]	G	A	2.405e^-4	0.502	SYNONYMOUS_CODING TbCMF46 DOWNSTREAM CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8746680	X_8746680_SNP [dm3] X_8852647_SNP [dm6]	C	T	2.413e^-4	0.502	UPSTREAM CG12075 INTRON CG12075
2L	6399507	2L_6399507_SNP [dm3] 2L_6399507_SNP [dm6]	A	G	2.413e^-4	0.502	INTRON CG42368
3L	20858572	3L_20858572_SNP [dm3] 3L_20865472_SNP [dm6]	G	T	2.414e^-4	0.502	INTRON CG32432
2L	8500033	2L_8500033_SNP [dm3] 2L_8500033_SNP [dm6]	A	T	2.416e^-4	0.502	INTRON Dh31
3L	12804361	3L_12804361_SNP [dm3] 3L_12811261_SNP [dm6]	C	T	2.419e^-4	0.502	SYNONYMOUS_CODING Sap130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26699984	3R_26699984_SNP [dm3] 3R_30874262_SNP [dm6]	T	G	2.426e^-4	0.502	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1067859	X_1067859_INS [dm3] X_1173826_INS [dm6]	A	ACTGGAGTA	2.433e^-4	0.502	DOWNSTREAM CG11384 & 1 other INTERGENIC
3R	19054766	3R_19054766_DEL [dm3] 3R_23229044_DEL [dm6]	TT	T	2.434e^-4	0.502	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_Trl
2L	6220884	2L_6220884_SNP [dm3] 2L_6220884_SNP [dm6]	T	G	2.439e^-4	0.502	INTERGENIC
3R	14786879	3R_14786879_SNP [dm3] 3R_18961157_SNP [dm6]	T	C	2.443e^-4	0.502	INTRON CG42613 & 1 other
2R	5696593	2R_5696593_SNP [dm3] 2R_9809088_SNP [dm6]	A	T	2.444e^-4	0.502	INTERGENIC
2L	9311045	2L_9311045_SNP [dm3] 2L_9311045_SNP [dm6]	G	T	2.446e^-4	0.502	INTERGENIC
X	8472584	X_8472584_SNP [dm3] X_8578551_SNP [dm6]	T	C	2.446e^-4	0.502	INTRON CG12065
3L	3365401	3L_3365401_SNP [dm3] 3L_3365401_SNP [dm6]	C	T	2.446e^-4	0.502	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12583718	2R_12583718_SNP [dm3] 2R_16696213_SNP [dm6]	C	A	2.448e^-4	0.502	INTRON CG30463
3R	17885630	3R_17885630_SNP [dm3] 3R_22059908_SNP [dm6]	T	C	2.449e^-4	0.502	INTRON how
2R	20365992	2R_20365992_SNP [dm3] 2R_24478469_SNP [dm6]	C	T	2.450e^-4	0.502	INTRON CG13579
2R	2426247	2R_2426247_SNP [dm3] 2R_6538742_SNP [dm6]	C	A	2.453e^-4	0.502	INTRON jing
3L	9962868	3L_9962868_SNP [dm3] 3L_9969768_SNP [dm6]	C	A	2.454e^-4	0.502	INTRON Nc
3L	20740713	3L_20740713_SNP [dm3] 3L_20747613_SNP [dm6]	G	T	2.454e^-4	0.502	INTERGENIC
2L	720532	2L_720532_SNP [dm3] 2L_720532_SNP [dm6]	C	G	2.457e^-4	0.502	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3726504	X_3726504_SNP [dm3] X_3832471_SNP [dm6]	T	G	2.458e^-4	0.502	DOWNSTREAM CG2901 INTRON ec	TF binding site BDTNP1_TFBS_twi
2L	5538698	2L_5538698_SNP [dm3] 2L_5538698_SNP [dm6]	C	A	2.460e^-4	0.502	DOWNSTREAM Hel25E INTRON CG14015	TF binding site mE1_TFBS_chinmo
3R	14779776	3R_14779776_DEL [dm3] 3R_18954054_DEL [dm6]	CA	T	2.460e^-4	0.502	INTRON CG42613 & 1 other
X	9557431	X_9557431_SNP [dm3] X_9663398_SNP [dm6]	G	A	2.460e^-4	0.502	UPSTREAM CG3106 INTERGENIC
X	8990367	X_8990367_SNP [dm3] X_9096334_SNP [dm6]	C	G	2.462e^-4	0.502	INTRON CG7766
3L	3365187	3L_3365187_SNP [dm3] 3L_3365187_SNP [dm6]	G	A	2.468e^-4	0.502	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2400002	2L_2400002_SNP [dm3] 2L_2400002_SNP [dm6]	A	G	2.471e^-4	0.502	UPSTREAM VGlut INTRON VGlut
2L	3430875	2L_3430875_SNP [dm3] 2L_3430875_SNP [dm6]	A	G	2.471e^-4	0.502	INTERGENIC
X	20613722	X_20613722_SNP [dm3] X_20742695_SNP [dm6]	C	A	2.472e^-4	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17168121	2L_17168121_SNP [dm3] 2L_17168121_SNP [dm6]	A	T	2.475e^-4	0.502	INTRON beat-IIIa & 1 other
X	20202500	X_20202500_SNP [dm3] X_20331473_SNP [dm6]	G	A	2.476e^-4	0.502	INTERGENIC
2L	5643337	2L_5643337_DEL [dm3] 2L_5643337_DEL [dm6]	CGTCTTTATTTGAGC...	C	2.477e^-4	0.502	INTRON CG31646
2L	15106388	2L_15106388_SNP [dm3] 2L_15106388_SNP [dm6]	G	A	2.479e^-4	0.502	INTERGENIC
X	8555901	X_8555901_SNP [dm3] X_8661868_SNP [dm6]	A	G	2.479e^-4	0.502	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16861967	2L_16861967_SNP [dm3] 2L_16861967_SNP [dm6]	G	A	2.480e^-4	0.502	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10147544	2L_10147544_SNP [dm3] 2L_10147544_SNP [dm6]	A	G	2.482e^-4	0.502	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
2L	3100847	2L_3100847_SNP [dm3] 2L_3100847_SNP [dm6]	T	C	2.487e^-4	0.502	INTRON toc
2L	3100868	2L_3100868_SNP [dm3] 2L_3100868_SNP [dm6]	G	T	2.487e^-4	0.502	INTRON toc
2L	19950645	2L_19950645_SNP [dm3] 2L_19950645_SNP [dm6]	C	T	2.487e^-4	0.502	INTRON sick
2L	1019989	2L_1019989_SNP [dm3] 2L_1019989_SNP [dm6]	C	T	2.492e^-4	0.502	INTRON IA-2
2L	10305720	2L_10305720_SNP [dm3] 2L_10305720_SNP [dm6]	T	A	2.495e^-4	0.502	INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	16758413	2L_16758413_SNP [dm3] 2L_16758413_SNP [dm6]	G	A	2.496e^-4	0.502	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
3L	5252855	3L_5252855_SNP [dm3] 3L_5259755_SNP [dm6]	G	A	2.496e^-4	0.502	INTRON shep
3L	13527508	3L_13527508_SNP [dm3] 3L_13534408_SNP [dm6]	G	A	2.496e^-4	0.502	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11683527	3R_11683527_SNP [dm3] 3R_15857805_SNP [dm6]	A	C	2.497e^-4	0.502	UPSTREAM Hmt-1 DOWNSTREAM CG31183 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	19650869	2L_19650869_SNP [dm3] 2L_19650869_SNP [dm6]	T	C	2.502e^-4	0.502	INTRON Lar
2L	3157723	2L_3157723_SNP [dm3] 2L_3157723_SNP [dm6]	T	C	2.503e^-4	0.502	INTRON Mad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	18200850	3L_18200850_SNP [dm3] 3L_18207750_SNP [dm6]	A	T	2.503e^-4	0.502	INTERGENIC
X	20934803	X_20934803_SNP [dm3] X_21063776_SNP [dm6]	A	C	2.509e^-4	0.502	INTRON bves & 1 other
3R	25679087	3R_25679087_DEL [dm3] 3R_29853365_DEL [dm6]	ACA	A	2.510e^-4	0.502	INTRON Cad99C	TF binding site mE1_TFBS_cad
3R	26936288	3R_26936288_SNP [dm3] 3R_31110566_SNP [dm6]	C	T	2.521e^-4	0.502	INTERGENIC
3L	10934478	3L_10934478_SNP [dm3] 3L_10941378_SNP [dm6]	T	C	2.532e^-4	0.502	INTERGENIC
2L	21118284	2L_21118284_SNP [dm3] 2L_21118284_SNP [dm6]	T	C	2.532e^-4	0.502	INTRON Nhe2
2R	6231536	2R_6231536_SNP [dm3] 2R_10344031_SNP [dm6]	G	A	2.537e^-4	0.502	SYNONYMOUS_CODING CG42732 INTRON CG42732
3R	25718469	3R_25718469_SNP [dm3] 3R_29892747_SNP [dm6]	C	T	2.541e^-4	0.502	INTRON CG31038
2R	11632532	2R_11632532_DEL [dm3] 2R_15745027_DEL [dm6]	CATGGA	T	2.541e^-4	0.502	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25802320	3R_25802320_SNP [dm3] 3R_29976598_SNP [dm6]	G	C	2.541e^-4	0.502	INTERGENIC
2L	2506117	2L_2506117_INS [dm3] 2L_2506117_INS [dm6]	A	ACA	2.543e^-4	0.502	INTERGENIC
2L	16715451	2L_16715451_SNP [dm3] 2L_16715451_SNP [dm6]	C	T	2.543e^-4	0.502	UPSTREAM Cyt-c-d INTRON CG31808	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17774437	X_17774437_SNP [dm3] X_17880404_SNP [dm6]	C	T	2.545e^-4	0.502	INTRON mnb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6964911	X_6964911_SNP [dm3] X_7070878_SNP [dm6]	A	G	2.545e^-4	0.502	SYNONYMOUS_CODING CG4607
3L	17280430	3L_17280430_SNP [dm3] 3L_17287330_SNP [dm6]	A	G	2.546e^-4	0.502	INTERGENIC
2L	6401111	2L_6401111_SNP [dm3] 2L_6401111_SNP [dm6]	T	C	2.546e^-4	0.502	INTRON CG42368
2L	20075835	2L_20075835_SNP [dm3] 2L_20075835_SNP [dm6]	A	G	2.553e^-4	0.502	UTR_5_PRIME neb UPSTREAM pr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	7024973	2R_7024973_SNP [dm3] 2R_11137468_SNP [dm6]	T	A	2.553e^-4	0.502	SYNONYMOUS_CODING BBS4
X	18763653	X_18763653_SNP [dm3] X_18869620_SNP [dm6]	A	G	2.557e^-4	0.502	INTRON CG34401	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14288087	2L_14288087_SNP [dm3] 2L_14288087_SNP [dm6]	A	G	2.563e^-4	0.502	INTRON wb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3647912	2L_3647912_SNP [dm3] 2L_3647912_SNP [dm6]	T	A	2.563e^-4	0.502	INTRON for
3L	21522677	3L_21522677_SNP [dm3] 3L_21529577_SNP [dm6]	A	T	2.563e^-4	0.502	UPSTREAM CG32442 DOWNSTREAM Mkrn1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9131663	3L_9131663_SNP [dm3] 3L_9138563_SNP [dm6]	G	A	2.567e^-4	0.502	INTRON nwk	TF binding site BDTNP1_TFBS_dl
X	10024312	X_10024312_SNP [dm3] X_10130279_SNP [dm6]	T	G	2.570e^-4	0.502	INTRON CR44894 & 1 other
3R	6390924	3R_6390924_SNP [dm3] 3R_10565202_SNP [dm6]	A	G	2.571e^-4	0.502	INTRON hth
X	8990359	X_8990359_SNP [dm3] X_9096326_SNP [dm6]	A	C	2.572e^-4	0.502	INTRON CG7766
2L	6700388	2L_6700388_SNP [dm3] 2L_6700388_SNP [dm6]	C	T	2.572e^-4	0.502	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	11554921	X_11554921_SNP [dm3] X_11660888_SNP [dm6]	T	C	2.574e^-4	0.502	INTRON Ptp10D
3L	11003423	3L_11003423_SNP [dm3] 3L_11010323_SNP [dm6]	T	C	2.579e^-4	0.502	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	2785945	2R_2785945_SNP [dm3] 2R_6898440_SNP [dm6]	A	G	2.580e^-4	0.502	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2L	17164426	2L_17164426_SNP [dm3] 2L_17164426_SNP [dm6]	G	T	2.583e^-4	0.502	INTRON beat-IIIa & 1 other
2R	15745768	2R_15745768_SNP [dm3] 2R_19858263_SNP [dm6]	G	T	2.584e^-4	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15565641	3R_15565641_SNP [dm3] 3R_19739919_SNP [dm6]	G	A	2.586e^-4	0.502	INTRON GluClalpha
3R	15282917	3R_15282917_SNP [dm3] 3R_19457195_SNP [dm6]	C	A	2.593e^-4	0.502	SYNONYMOUS_CODING CG31221
X	1067461	X_1067461_SNP [dm3] X_1173428_SNP [dm6]	T	G	2.597e^-4	0.502	UTR_3_PRIME CG11378 DOWNSTREAM CG11378 & 1 other
2R	13201606	2R_13201606_SNP [dm3] 2R_17314101_SNP [dm6]	C	G	2.600e^-4	0.502	INTRON mbl
2L	16618195	2L_16618195_SNP [dm3] 2L_16618195_SNP [dm6]	A	G	2.601e^-4	0.502	INTRON CG42389
X	10013654	X_10013654_SNP [dm3] X_10119621_SNP [dm6]	C	G	2.602e^-4	0.502	INTRON RhoU & 1 other
2L	4125165	2L_4125165_SNP [dm3] 2L_4125165_SNP [dm6]	T	A	2.605e^-4	0.502	INTERGENIC
X	1070232	X_1070232_SNP [dm3] X_1176199_SNP [dm6]	G	A	2.610e^-4	0.502	UPSTREAM CG11384 INTERGENIC	TF binding site mE1_TFBS_HSA
X	1061760	X_1061760_SNP [dm3] X_1167727_SNP [dm6]	T	C	2.612e^-4	0.502	INTERGENIC
2R	7022754	2R_7022754_INS [dm3] 2R_11135249_INS [dm6]	C	CC	2.616e^-4	0.502	UPSTREAM BBS4 INTERGENIC
2L	3940891	2L_3940891_SNP [dm3] 2L_3940891_SNP [dm6]	G	A	2.622e^-4	0.502	INTRON fred
2L	737490	2L_737490_SNP [dm3] 2L_737490_SNP [dm6]	T	C	2.623e^-4	0.502	UTR_3_PRIME Eaat2
2L	5453232	2L_5453232_SNP [dm3] 2L_5453232_SNP [dm6]	C	T	2.627e^-4	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	10800273	3L_10800273_SNP [dm3] 3L_10807173_SNP [dm6]	C	T	2.628e^-4	0.502	INTERGENIC
2L	14651832	2L_14651832_SNP [dm3] 2L_14651832_SNP [dm6]	G	A	2.631e^-4	0.502	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	8684198	3R_8684198_DEL [dm3] 3R_12858476_DEL [dm6]	GTTCAAAGTTAAACAAG...	G	2.632e^-4	0.502	UPSTREAM CG10126 INTRON CG10126
2L	3465439	2L_3465439_SNP [dm3] 2L_3465439_SNP [dm6]	A	G	2.632e^-4	0.502	SYNONYMOUS_CODING msl-2 UPSTREAM Pdsw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4754306	2R_4754306_INS [dm3] 2R_8866801_INS [dm6]	A	AA	2.633e^-4	0.502	INTRON RyR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11812911	X_11812911_SNP [dm3] X_11918878_SNP [dm6]	A	G	2.633e^-4	0.502	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
X	1075243	X_1075243_SNP [dm3] X_1181210_SNP [dm6]	T	C	2.640e^-4	0.503	UTR_3_PRIME CG11379 UPSTREAM CG14627 DOWNSTREAM CG11379	TF binding site mE1_TFBS_chinmo
2R	20103854	2R_20103854_SNP [dm3] 2R_24216331_SNP [dm6]	C	T	2.644e^-4	0.503	INTRON CG30419	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	16872643	2L_16872643_SNP [dm3] 2L_16872643_SNP [dm6]	A	G	2.644e^-4	0.503	INTRON CR31781
X	16819415	X_16819415_SNP [dm3] X_16925382_SNP [dm6]	G	A	2.648e^-4	0.503	INTRON CG4928
X	10577872	X_10577872_SNP [dm3] X_10683839_SNP [dm6]	G	C	2.651e^-4	0.503	INTRON X11Lbeta	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	1070390	X_1070390_SNP [dm3] X_1176357_SNP [dm6]	G	T	2.651e^-4	0.503	UPSTREAM CG11384 INTERGENIC	TF binding site mE1_TFBS_HSA
X	13685405	X_13685405_SNP [dm3] X_13791372_SNP [dm6]	T	A	2.652e^-4	0.503	UPSTREAM CG10993 INTRON inaE
2R	4750786	2R_4750786_SNP [dm3] 2R_8863281_SNP [dm6]	A	G	2.659e^-4	0.503	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6401293	2L_6401293_SNP [dm3] 2L_6401293_SNP [dm6]	A	T	2.660e^-4	0.503	INTRON CG42368
X	7057274	X_7057274_SNP [dm3] X_7163241_SNP [dm6]	T	A	2.663e^-4	0.503	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5453216	2L_5453216_SNP [dm3] 2L_5453216_SNP [dm6]	G	C	2.665e^-4	0.503	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16671867	2L_16671867_SNP [dm3] 2L_16671867_SNP [dm6]	G	A	2.683e^-4	0.506	INTRON Trpgamma
X	10297877	X_10297877_DEL [dm3] X_10403844_DEL [dm6]	AA	A	2.688e^-4	0.506	INTRON flw	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6975165	2L_6975165_SNP [dm3] 2L_6975165_SNP [dm6]	T	A	2.688e^-4	0.506	INTRON uif	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12499437	3L_12499437_SNP [dm3] 3L_12506337_SNP [dm6]	G	A	2.693e^-4	0.506	NON_SYNONYMOUS_CODING CG10654 DOWNSTREAM vih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1066620	X_1066620_SNP [dm3] X_1172587_SNP [dm6]	G	C	2.693e^-4	0.506	UTR_3_PRIME CG11378
2R	18517982	2R_18517982_SNP [dm3] 2R_22630477_SNP [dm6]	C	T	2.697e^-4	0.506	SYNONYMOUS_CODING CG33143 INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.520e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03891

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.421	0.0644

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2429 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	8415244	3L_8415244_SNP [dm3] 3L_8422144_SNP [dm6]	G	A	2.158e^-9	0.004	UTR_5_PRIME CG32354	TF binding site BDTNP1_TFBS_dl
3R	9962008	3R_9962008_SNP [dm3] 3R_14136286_SNP [dm6]	C	T	2.124e^-7	0.133	INTERGENIC
3R	9962010	3R_9962010_DEL [dm3] 3R_14136288_DEL [dm6]	TCACGGTTTCTA...	T	2.124e^-7	0.133	INTERGENIC
3R	9961955	3R_9961955_SNP [dm3] 3R_14136233_SNP [dm6]	C	G	4.168e^-7	0.147	INTERGENIC
3R	14777136	3R_14777136_DEL [dm3] 3R_18951414_DEL [dm6]	GGCCCTCGTATTGTTTGCAA...	G	4.612e^-7	0.147	INTRON CG42613 & 1 other
2L	10203198	2L_10203198_SNP [dm3] 2L_10203198_SNP [dm6]	A	G	5.128e^-7	0.147	DOWNSTREAM RpL7 INTRON CG34159
3R	9962027	3R_9962027_SNP [dm3] 3R_14136305_SNP [dm6]	T	C	6.121e^-7	0.147	INTERGENIC
3R	9962113	3R_9962113_SNP [dm3] 3R_14136391_SNP [dm6]	G	C	6.255e^-7	0.147	INTERGENIC
3R	9962100	3R_9962100_DEL [dm3] 3R_14136378_DEL [dm6]	AACTACA	A	7.588e^-7	0.158	INTERGENIC
3R	25783327	3R_25783327_SNP [dm3] 3R_29957605_SNP [dm6]	C	G	1.852e^-6	0.328	INTRON TkR99D
3R	9961751	3R_9961751_SNP [dm3] 3R_14136029_SNP [dm6]	G	A	1.926e^-6	0.328	INTERGENIC
3L	708682	3L_708682_SNP [dm3] 3L_708682_SNP [dm6]	A	T	2.204e^-6	0.344	UTR_3_PRIME CkIIalpha-i3 UPSTREAM CG13895	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3R	9961956	3R_9961956_SNP [dm3] 3R_14136234_SNP [dm6]	G	T	2.690e^-6	0.372	INTERGENIC
3R	9962057	3R_9962057_SNP [dm3] 3R_14136335_SNP [dm6]	T	C	2.777e^-6	0.372	INTERGENIC
3L	3393099	3L_3393099_SNP [dm3] 3L_3393099_SNP [dm6]	T	C	3.122e^-6	0.39	UPSTREAM CR45737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13621338	3L_13621338_SNP [dm3] 3L_13628238_SNP [dm6]	G	A	3.411e^-6	0.4	INTRON bru-3
2R	17683042	2R_17683042_SNP [dm3] 2R_21795537_SNP [dm6]	G	A	3.642e^-6	0.402	UPSTREAM CG34204 INTERGENIC
3L	10005952	3L_10005952_SNP [dm3] 3L_10012852_SNP [dm6]	T	C	4.093e^-6	0.426	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9962051	3R_9962051_SNP [dm3] 3R_14136329_SNP [dm6]	G	A	4.512e^-6	0.426	INTERGENIC
2L	10167949	2L_10167949_SNP [dm3] 2L_10167949_SNP [dm6]	C	T	5.022e^-6	0.426	INTRON CG44153
3R	17675542	3R_17675542_DEL [dm3] 3R_21849820_DEL [dm6]	TT	T	5.042e^-6	0.426	DOWNSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11071669	2R_11071669_SNP [dm3] 2R_15184164_SNP [dm6]	T	G	5.153e^-6	0.426	UPSTREAM CG43068 INTRON igl
3R	9962059	3R_9962059_DEL [dm3] 3R_14136337_DEL [dm6]	ATGTTTC	A	5.224e^-6	0.426	INTERGENIC
3R	22003341	3R_22003341_SNP [dm3] 3R_26177619_SNP [dm6]	G	A	5.468e^-6	0.427	INTRON CG31323
2R	17113882	2R_17113882_SNP [dm3] 2R_21226377_SNP [dm6]	C	A	5.811e^-6	0.43	INTRON ASPP
3R	9961961	3R_9961961_SNP [dm3] 3R_14136239_SNP [dm6]	A	G	5.977e^-6	0.43	INTERGENIC
3R	23881540	3R_23881540_SNP [dm3] 3R_28055818_SNP [dm6]	C	G	6.596e^-6	0.43	INTRON CG34362
X	12263837	X_12263837_SNP [dm3] X_12369804_SNP [dm6]	A	C	6.983e^-6	0.43	INTERGENIC
2R	15899724	2R_15899724_SNP [dm3] 2R_20012219_SNP [dm6]	A	T	7.420e^-6	0.43	INTERGENIC
3L	7115760	3L_7115760_SNP [dm3] 3L_7122660_SNP [dm6]	G	C	7.486e^-6	0.43	SYNONYMOUS_CODING form3 DOWNSTREAM msl-3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4918156	2L_4918156_DEL [dm3] 2L_4918156_DEL [dm6]	TTAAT	G	7.501e^-6	0.43	INTRON hoe1
X	9254034	X_9254034_SNP [dm3] X_9360001_SNP [dm6]	A	C	7.706e^-6	0.43	UTR_3_PRIME mgl
3L	5868476	3L_5868476_SNP [dm3] 3L_5875376_SNP [dm6]	C	T	7.722e^-6	0.43	SYNONYMOUS_CODING CG18586
3R	25850807	3R_25850807_SNP [dm3] 3R_30025085_SNP [dm6]	A	C	7.938e^-6	0.43	INTRON Axn
2R	17683038	2R_17683038_SNP [dm3] 2R_21795533_SNP [dm6]	G	C	8.273e^-6	0.43	UPSTREAM CG34204 INTERGENIC
3R	9961902	3R_9961902_INS [dm3] 3R_14136180_INS [dm6]	A	AAATCATATGTT...	8.417e^-6	0.43	INTERGENIC
X	16599610	X_16599610_SNP [dm3] X_16705577_SNP [dm6]	T	A	8.477e^-6	0.43	DOWNSTREAM CG9672 & 1 other INTRON CG4678
2L	3940838	2L_3940838_SNP [dm3] 2L_3940838_SNP [dm6]	T	G	8.891e^-6	0.434	INTRON fred
3R	9961912	3R_9961912_SNP [dm3] 3R_14136190_SNP [dm6]	G	A	9.315e^-6	0.434	INTERGENIC
X	12442912	X_12442912_SNP [dm3] X_12548879_SNP [dm6]	T	C	9.451e^-6	0.434	INTRON CG43921
X	16816992	X_16816992_SNP [dm3] X_16922959_SNP [dm6]	C	G	9.486e^-6	0.434	INTRON CG4928
3L	14039897	3L_14039897_SNP [dm3] 3L_14046797_SNP [dm6]	T	C	9.983e^-6	0.437	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
3R	9961889	3R_9961889_DEL [dm3] 3R_14136167_DEL [dm6]	AAAAAGTACATC...	A	1.005e^-5	0.437	INTERGENIC
2L	1015071	2L_1015071_SNP [dm3] 2L_1015071_SNP [dm6]	G	A	1.036e^-5	0.437	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9113279	3L_9113279_SNP [dm3] 3L_9120179_SNP [dm6]	C	A	1.058e^-5	0.437	INTRON bol
X	16599614	X_16599614_SNP [dm3] X_16705581_SNP [dm6]	A	C	1.075e^-5	0.437	DOWNSTREAM CG9672 & 1 other INTRON CG4678
3R	21499020	3R_21499020_SNP [dm3] 3R_25673298_SNP [dm6]	C	G	1.095e^-5	0.437	INTRON Lgr3
2R	15899742	2R_15899742_SNP [dm3] 2R_20012237_SNP [dm6]	C	T	1.143e^-5	0.446	INTERGENIC
3L	3393060	3L_3393060_SNP [dm3] 3L_3393060_SNP [dm6]	G	T	1.188e^-5	0.455	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5868437	3L_5868437_SNP [dm3] 3L_5875337_SNP [dm6]	G	A	1.287e^-5	0.472	SYNONYMOUS_CODING CG18586
2R	17260591	2R_17260591_SNP [dm3] 2R_21373086_SNP [dm6]	C	G	1.296e^-5	0.472	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	708052	3L_708052_SNP [dm3] 3L_708052_SNP [dm6]	A	G	1.310e^-5	0.472	DOWNSTREAM CkIIalpha-i3 INTRON CG13895	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	708073	3L_708073_SNP [dm3] 3L_708073_SNP [dm6]	C	T	1.333e^-5	0.472	SPLICE_SITE_REGION CG13895 UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	17751179	2R_17751179_SNP [dm3] 2R_21863674_SNP [dm6]	T	C	1.378e^-5	0.472	INTERGENIC
3L	13116697	3L_13116697_SNP [dm3] 3L_13123597_SNP [dm6]	G	A	1.383e^-5	0.472	INTERGENIC
X	9112961	X_9112961_SNP [dm3] X_9218928_SNP [dm6]	A	G	1.422e^-5	0.475	INTRON t	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8492054	2L_8492054_SNP [dm3] 2L_8492054_SNP [dm6]	G	A	1.464e^-5	0.475	UTR_3_PRIME Dh31 DOWNSTREAM CG43400
2L	10164532	2L_10164532_SNP [dm3] 2L_10164532_SNP [dm6]	T	A	1.502e^-5	0.475	INTRON CG44153
X	7754595	X_7754595_SNP [dm3] X_7860562_SNP [dm6]	T	C	1.520e^-5	0.475	INTERGENIC
3L	708079	3L_708079_SNP [dm3] 3L_708079_SNP [dm6]	G	C	1.570e^-5	0.475	START_GAINED CG13895 UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	25073490	3R_25073490_SNP [dm3] 3R_29247768_SNP [dm6]	A	G	1.572e^-5	0.475	SYNONYMOUS_CODING SP1029	TF binding site mE1_TFBS_cad
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	1.609e^-5	0.475	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3177921	2L_3177921_SNP [dm3] 2L_3177921_SNP [dm6]	C	T	1.631e^-5	0.475	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8168338	2L_8168338_SNP [dm3] 2L_8168338_SNP [dm6]	C	A	1.641e^-5	0.475	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16816996	X_16816996_SNP [dm3] X_16922963_SNP [dm6]	C	T	1.647e^-5	0.475	INTRON CG4928
2L	16803175	2L_16803175_SNP [dm3] 2L_16803175_SNP [dm6]	T	G	1.726e^-5	0.482	SYNONYMOUS_CODING CG13280	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16711729	2R_16711729_SNP [dm3] 2R_20824224_SNP [dm6]	G	A	1.770e^-5	0.482	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25850840	3R_25850840_SNP [dm3] 3R_30025118_SNP [dm6]	T	C	1.786e^-5	0.482	INTRON Axn
3R	25799032	3R_25799032_SNP [dm3] 3R_29973310_SNP [dm6]	A	G	1.797e^-5	0.482	INTERGENIC
X	12428265	X_12428265_SNP [dm3] X_12534232_SNP [dm6]	A	T	1.814e^-5	0.482	INTRON CG43921
2R	15785411	2R_15785411_SNP [dm3] 2R_19897906_SNP [dm6]	C	T	1.824e^-5	0.482	EXON CR44572
3R	21499018	3R_21499018_SNP [dm3] 3R_25673296_SNP [dm6]	G	T	1.874e^-5	0.486	INTRON Lgr3
X	7754600	X_7754600_SNP [dm3] X_7860567_SNP [dm6]	A	G	1.898e^-5	0.486	INTERGENIC
3L	9113306	3L_9113306_SNP [dm3] 3L_9120206_SNP [dm6]	C	G	1.923e^-5	0.486	INTRON bol
3L	20000931	3L_20000931_SNP [dm3] 3L_20007831_SNP [dm6]	G	T	1.945e^-5	0.486	INTRON kug	TF binding site mE1_TFBS_zfh1
3R	8276232	3R_8276232_SNP [dm3] 3R_12450510_SNP [dm6]	A	T	2.004e^-5	0.495	INTRON CG18549	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3091180	2L_3091180_DEL [dm3] 2L_3091180_DEL [dm6]	TGT	T	2.062e^-5	0.499	UPSTREAM toc INTRON toc
3L	14039744	3L_14039744_SNP [dm3] 3L_14046644_SNP [dm6]	C	G	2.095e^-5	0.499	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10012009	3R_10012009_SNP [dm3] 3R_14186287_SNP [dm6]	C	G	2.135e^-5	0.499	INTRON Dop1R1
3L	708044	3L_708044_SNP [dm3] 3L_708044_SNP [dm6]	G	A	2.153e^-5	0.499	DOWNSTREAM CkIIalpha-i3 INTRON CG13895	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	12700931	3R_12700931_SNP [dm3] 3R_16875209_SNP [dm6]	G	C	2.155e^-5	0.499	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3702450	3L_3702450_SNP [dm3] 3L_3702450_SNP [dm6]	C	T	2.276e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10005963	3L_10005963_SNP [dm3] 3L_10012863_SNP [dm6]	G	A	2.336e^-5	0.511	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9957951	3R_9957951_SNP [dm3] 3R_14132229_SNP [dm6]	G	A	2.345e^-5	0.511	UPSTREAM CG14356 INTERGENIC
3L	3389869	3L_3389869_SNP [dm3] 3L_3389869_SNP [dm6]	T	G	2.372e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3389873	3L_3389873_SNP [dm3] 3L_3389873_SNP [dm6]	T	C	2.372e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3389880	3L_3389880_INS [dm3] 3L_3389880_INS [dm6]	A	AGTAGCTATTTAAACCCATA...	2.372e^-5	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6976117	X_6976117_SNP [dm3] X_7082084_SNP [dm6]	T	A	2.543e^-5	0.542	DOWNSTREAM Sxl INTRON Sxl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1015092	2L_1015092_SNP [dm3] 2L_1015092_SNP [dm6]	T	A	2.674e^-5	0.555	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22003324	3R_22003324_SNP [dm3] 3R_26177602_SNP [dm6]	A	C	2.801e^-5	0.555	INTRON CG31323
X	557172	X_557172_DEL [dm3] X_663139_DEL [dm6]	GGAGTAGGAGCAG...	G	2.813e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9962071	3R_9962071_SNP [dm3] 3R_14136349_SNP [dm6]	A	T	2.819e^-5	0.555	INTERGENIC
3L	4551553	3L_4551553_SNP [dm3] 3L_4551553_SNP [dm6]	A	C	2.860e^-5	0.555	SYNONYMOUS_CODING CG11357	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15049182	2L_15049182_SNP [dm3] 2L_15049182_SNP [dm6]	C	T	2.881e^-5	0.555	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	11681010	X_11681010_SNP [dm3] X_11786977_SNP [dm6]	A	C	2.906e^-5	0.555	UPSTREAM Karl INTERGENIC
2R	12682497	2R_12682497_SNP [dm3] 2R_16794992_SNP [dm6]	T	C	2.913e^-5	0.555	INTRON CG15615
2R	4575873	2R_4575873_SNP [dm3] 2R_8688368_SNP [dm6]	A	T	2.926e^-5	0.555	INTERGENIC
3L	14470576	3L_14470576_SNP [dm3] 3L_14477476_SNP [dm6]	T	A	2.956e^-5	0.555	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2L	10204498	2L_10204498_SNP [dm3] 2L_10204498_SNP [dm6]	T	A	2.985e^-5	0.555	UPSTREAM CG34159 DOWNSTREAM CG5734 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22003348	3R_22003348_SNP [dm3] 3R_26177626_SNP [dm6]	T	A	2.997e^-5	0.555	INTRON CG31323
2L	881130	2L_881130_SNP [dm3] 2L_881130_SNP [dm6]	T	C	3.018e^-5	0.555	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2R	12583718	2R_12583718_SNP [dm3] 2R_16696213_SNP [dm6]	C	A	3.058e^-5	0.555	INTRON CG30463
3L	3389827	3L_3389827_SNP [dm3] 3L_3389827_SNP [dm6]	T	A	3.114e^-5	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	709440	3L_709440_SNP [dm3] 3L_709440_SNP [dm6]	G	C	3.211e^-5	0.555	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	3389813	3L_3389813_SNP [dm3] 3L_3389813_SNP [dm6]	C	T	3.248e^-5	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10005910	3L_10005910_SNP [dm3] 3L_10012810_SNP [dm6]	G	A	3.261e^-5	0.555	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14039796	3L_14039796_SNP [dm3] 3L_14046696_SNP [dm6]	G	A	3.271e^-5	0.555	INTRON blue	TF binding site mE1_TFBS_cad
2R	16193430	2R_16193430_SNP [dm3] 2R_20305925_SNP [dm6]	C	A	3.272e^-5	0.555	INTRON CG11200
2R	17749620	2R_17749620_INS [dm3] 2R_21862115_INS [dm6]	A	AGCAGCTTGGTTGCT...	3.312e^-5	0.555	DOWNSTREAM CG9294 INTERGENIC
3L	10006120	3L_10006120_SNP [dm3] 3L_10013020_SNP [dm6]	T	C	3.333e^-5	0.555	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3408458	3L_3408458_SNP [dm3] 3L_3408458_SNP [dm6]	C	A	3.336e^-5	0.555	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	4313231	3L_4313231_SNP [dm3] 3L_4313231_SNP [dm6]	T	A	3.392e^-5	0.555	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	21603025	3R_21603025_DEL [dm3] 3R_25777303_DEL [dm6]	AG	A	3.393e^-5	0.555	UTR_3_PRIME CG4956 UPSTREAM CG17195
X	12442940	X_12442940_SNP [dm3] X_12548907_SNP [dm6]	G	T	3.445e^-5	0.555	INTRON CG43921
2R	18651247	2R_18651247_SNP [dm3] 2R_22763742_SNP [dm6]	T	G	3.447e^-5	0.555	START_GAINED CG13527 UTR_5_PRIME CG13527 INTRON CG42260
2L	697672	2L_697672_SNP [dm3] 2L_697672_SNP [dm6]	A	T	3.469e^-5	0.555	INTRON ds	TF binding site mE1_TFBS_HSA
3R	25850824	3R_25850824_SNP [dm3] 3R_30025102_SNP [dm6]	T	C	3.482e^-5	0.555	INTRON Axn
X	16819956	X_16819956_SNP [dm3] X_16925923_SNP [dm6]	T	A	3.513e^-5	0.555	INTRON CG4928
2R	13201581	2R_13201581_SNP [dm3] 2R_17314076_SNP [dm6]	T	A	3.548e^-5	0.555	INTRON mbl
3L	14460521	3L_14460521_SNP [dm3] 3L_14467421_SNP [dm6]	G	A	3.590e^-5	0.555	INTRON bbg
3L	8933075	3L_8933075_SNP [dm3] 3L_8939975_SNP [dm6]	C	T	3.590e^-5	0.555	UTR_3_PRIME orb2 INTRON CG43783
3R	8358482	3R_8358482_SNP [dm3] 3R_12532760_SNP [dm6]	T	G	3.612e^-5	0.555	INTRON Octbeta3R
3R	14348942	3R_14348942_SNP [dm3] 3R_18523220_SNP [dm6]	G	C	3.726e^-5	0.561	INTRON fru
X	4469058	X_4469058_SNP [dm3] X_4575025_SNP [dm6]	T	C	3.785e^-5	0.561	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18651258	2R_18651258_SNP [dm3] 2R_22763753_SNP [dm6]	C	A	3.791e^-5	0.561	UTR_5_PRIME CG13527 INTRON CG42260
2R	12771624	2R_12771624_SNP [dm3] 2R_16884119_SNP [dm6]	C	A	3.805e^-5	0.561	SYNONYMOUS_CODING CG6472 INTRON CG8910
2R	15389426	2R_15389426_SNP [dm3] 2R_19501921_SNP [dm6]	A	T	3.824e^-5	0.561	UPSTREAM CG16926 INTERGENIC
2L	5809499	2L_5809499_SNP [dm3] 2L_5809499_SNP [dm6]	T	G	3.829e^-5	0.561	UPSTREAM CR44575 & 1 other DOWNSTREAM CG11034 INTERGENIC
3L	10006190	3L_10006190_SNP [dm3] 3L_10013090_SNP [dm6]	T	A	3.865e^-5	0.562	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12668584	X_12668584_DEL [dm3] X_12774551_DEL [dm6]	ATA	A	4.003e^-5	0.568	UTR_3_PRIME CG32647 DOWNSTREAM CG32647
X	5393691	X_5393691_SNP [dm3] X_5499658_SNP [dm6]	T	C	4.072e^-5	0.568	DOWNSTREAM CG32762 INTERGENIC
X	604933	X_604933_SNP [dm3] X_710900_SNP [dm6]	T	G	4.124e^-5	0.568	INTRON sdk	transposable element FlyBase
3L	3411889	3L_3411889_SNP [dm3] 3L_3411889_SNP [dm6]	T	A	4.131e^-5	0.568	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	5725578	3L_5725578_SNP [dm3] 3L_5732478_SNP [dm6]	T	A	4.172e^-5	0.568	INTRON sif
2L	10165850	2L_10165850_SNP [dm3] 2L_10165850_SNP [dm6]	G	A	4.182e^-5	0.568	INTRON CG44153
3R	25457775	3R_25457775_SNP [dm3] 3R_29632053_SNP [dm6]	C	T	4.186e^-5	0.568	NON_SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16720232	2R_16720232_SNP [dm3] 2R_20832727_SNP [dm6]	C	T	4.242e^-5	0.568	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9010033	3L_9010033_SNP [dm3] 3L_9016933_SNP [dm6]	G	A	4.253e^-5	0.568	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21036445	3L_21036445_SNP [dm3] 3L_21043345_SNP [dm6]	C	G	4.323e^-5	0.568	INTRON siz
3R	5158206	3R_5158206_SNP [dm3] 3R_9332484_SNP [dm6]	A	T	4.342e^-5	0.568	UTR_3_PRIME CG8866 UPSTREAM CG16749 INTRON CG8866	TF binding site mE1_TFBS_cad
2L	1933645	2L_1933645_INS [dm3] 2L_1933645_INS [dm6]	A	AA	4.353e^-5	0.568	INTRON CG7337
3R	9957062	3R_9957062_SNP [dm3] 3R_14131340_SNP [dm6]	G	T	4.433e^-5	0.568	INTRON CG14356
3L	22995658	3L_22995658_SNP [dm3] 3L_23002558_SNP [dm6]	A	G	4.441e^-5	0.568	INTRON nrm
3L	15961265	3L_15961265_SNP [dm3] 3L_15968165_SNP [dm6]	C	T	4.465e^-5	0.568	UPSTREAM CG10516 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14826251	3R_14826251_SNP [dm3] 3R_19000529_SNP [dm6]	A	T	4.469e^-5	0.568	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10006039	3L_10006039_SNP [dm3] 3L_10012939_SNP [dm6]	T	G	4.498e^-5	0.568	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5465554	X_5465554_SNP [dm3] X_5571521_SNP [dm6]	A	T	4.529e^-5	0.568	INTERGENIC
3L	10005959	3L_10005959_SNP [dm3] 3L_10012859_SNP [dm6]	C	G	4.626e^-5	0.568	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8454993	3L_8454993_SNP [dm3] 3L_8461893_SNP [dm6]	C	A	4.628e^-5	0.568	INTRON Gug	TF binding site BDTNP1_TFBS_dl
2L	17164568	2L_17164568_SNP [dm3] 2L_17164568_SNP [dm6]	A	G	4.670e^-5	0.568	INTRON beat-IIIa & 1 other
X	12444767	X_12444767_SNP [dm3] X_12550734_SNP [dm6]	T	C	4.674e^-5	0.568	INTRON CG43921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15500097	2L_15500097_SNP [dm3] 2L_15500097_SNP [dm6]	A	T	4.676e^-5	0.568	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16583140	2R_16583140_INS [dm3] 2R_20695635_INS [dm6]	G	GT	4.678e^-5	0.568	INTERGENIC
2L	1279489	2L_1279489_SNP [dm3] 2L_1279489_SNP [dm6]	G	T	4.697e^-5	0.568	INTRON robo3
3R	15768997	3R_15768997_SNP [dm3] 3R_19943275_SNP [dm6]	A	C	4.698e^-5	0.568	INTRON Hs6st
2L	5431489	2L_5431489_SNP [dm3] 2L_5431489_SNP [dm6]	A	C	4.753e^-5	0.572	UPSTREAM CR43713 INTERGENIC	TF binding site mE1_TFBS_sens
2L	8424007	2L_8424007_SNP [dm3] 2L_8424007_SNP [dm6]	G	A	4.892e^-5	0.584	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	19636210	3L_19636210_SNP [dm3] 3L_19643110_SNP [dm6]	G	C	4.982e^-5	0.589	UPSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2142835	3L_2142835_SNP [dm3] 3L_2142835_SNP [dm6]	T	C	4.994e^-5	0.589	INTRON zormin
2R	17683053	2R_17683053_SNP [dm3] 2R_21795548_SNP [dm6]	C	A	5.075e^-5	0.591	UPSTREAM CG34204 INTERGENIC
3L	4313221	3L_4313221_SNP [dm3] 3L_4313221_SNP [dm6]	A	T	5.100e^-5	0.591	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17260323	2R_17260323_SNP [dm3] 2R_21372818_SNP [dm6]	A	T	5.123e^-5	0.591	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10006200	3L_10006200_SNP [dm3] 3L_10013100_SNP [dm6]	A	T	5.160e^-5	0.591	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1282724	3L_1282724_SNP [dm3] 3L_1282724_SNP [dm6]	A	G	5.169e^-5	0.591	INTRON CG32333
2R	18899265	2R_18899265_SNP [dm3] 2R_23011742_SNP [dm6]	A	G	5.219e^-5	0.593	UTR_3_PRIME CG42741 INTRON twi
2L	10052907	2L_10052907_SNP [dm3] 2L_10052907_SNP [dm6]	T	C	5.255e^-5	0.593	UPSTREAM CR44875 DOWNSTREAM CR44874 INTERGENIC
3L	9113299	3L_9113299_SNP [dm3] 3L_9120199_SNP [dm6]	C	T	5.278e^-5	0.593	INTRON bol
3L	8454994	3L_8454994_DEL [dm3] 3L_8461894_DEL [dm6]	TA	T	5.318e^-5	0.593	INTRON Gug	TF binding site BDTNP1_TFBS_dl
2R	15899752	2R_15899752_SNP [dm3] 2R_20012247_SNP [dm6]	G	A	5.368e^-5	0.593	INTERGENIC
3R	25316928	3R_25316928_SNP [dm3] 3R_29491206_SNP [dm6]	T	C	5.374e^-5	0.593	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10647828	3L_10647828_SNP [dm3] 3L_10654728_SNP [dm6]	G	A	5.445e^-5	0.594	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2L	8275137	2L_8275137_SNP [dm3] 2L_8275137_SNP [dm6]	G	A	5.531e^-5	0.594	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14040152	3L_14040152_SNP [dm3] 3L_14047052_SNP [dm6]	G	A	5.612e^-5	0.594	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
2R	12610961	2R_12610961_SNP [dm3] 2R_16723456_SNP [dm6]	G	C	5.665e^-5	0.594	INTRON CG30463
2R	681696	2R_681696_SNP [dm3] 2R_4794191_SNP [dm6]	T	A	5.667e^-5	0.594	INTERGENIC	transposable element FlyBase
3L	11798818	3L_11798818_SNP [dm3] 3L_11805718_SNP [dm6]	C	G	5.674e^-5	0.594	NON_SYNONYMOUS_CODING CG42255
2R	12450869	2R_12450869_SNP [dm3] 2R_16563364_SNP [dm6]	C	G	5.678e^-5	0.594	INTRON DAT
X	7689231	X_7689231_SNP [dm3] X_7795198_SNP [dm6]	G	A	5.722e^-5	0.594	INTERGENIC
2R	11532988	2R_11532988_SNP [dm3] 2R_15645483_SNP [dm6]	G	T	5.727e^-5	0.594	INTRON CG42524	TF binding site BDTNP1_TFBS_hb
3R	8358466	3R_8358466_SNP [dm3] 3R_12532744_SNP [dm6]	T	C	5.753e^-5	0.594	INTRON Octbeta3R
2L	6408906	2L_6408906_DEL [dm3] 2L_6408906_DEL [dm6]	ACCCACACC	A	5.770e^-5	0.594	INTRON CG42368	TF binding site mE1_TFBS_inv
3R	25850830	3R_25850830_SNP [dm3] 3R_30025108_SNP [dm6]	A	G	5.781e^-5	0.594	INTRON Axn
3L	4129159	3L_4129159_SNP [dm3] 3L_4129159_SNP [dm6]	C	A	5.810e^-5	0.594	INTRON ens	TF binding site BDTNP1_TFBS_sna
3L	10107586	3L_10107586_SNP [dm3] 3L_10114486_SNP [dm6]	G	A	5.861e^-5	0.594	DOWNSTREAM dpr6 INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14740231	3R_14740231_SNP [dm3] 3R_18914509_SNP [dm6]	A	T	5.864e^-5	0.594	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	16969961	2R_16969961_SNP [dm3] 2R_21082456_SNP [dm6]	G	T	5.894e^-5	0.594	INTRON Treh
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	5.932e^-5	0.595	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15899775	2R_15899775_SNP [dm3] 2R_20012270_SNP [dm6]	G	A	6.044e^-5	0.603	INTERGENIC
2L	7408649	2L_7408649_SNP [dm3] 2L_7408649_SNP [dm6]	C	G	6.144e^-5	0.61	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	12700477	3R_12700477_DEL [dm3] 3R_16874755_DEL [dm6]	CGAAAA	C	6.199e^-5	0.612	INTRON iab-8	TF binding site BDTNP1_TFBS_twi
3L	4313198	3L_4313198_SNP [dm3] 3L_4313198_SNP [dm6]	A	G	6.310e^-5	0.613	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	5613079	X_5613079_SNP [dm3] X_5719046_SNP [dm6]	T	A	6.319e^-5	0.613	DOWNSTREAM CG32758 INTERGENIC
2L	16808005	2L_16808005_SNP [dm3] 2L_16808005_SNP [dm6]	G	A	6.338e^-5	0.613	INTRON CG13280 & 1 other
2R	8484282	2R_8484282_SNP [dm3] 2R_12596777_SNP [dm6]	A	G	6.366e^-5	0.613	INTRON Amph
2L	6642369	2L_6642369_SNP [dm3] 2L_6642369_SNP [dm6]	A	C	6.394e^-5	0.613	INTRON CG31635
2L	9401108	2L_9401108_SNP [dm3] 2L_9401108_SNP [dm6]	A	T	6.404e^-5	0.613	INTRON Shawl
2L	14537882	2L_14537882_SNP [dm3] 2L_14537882_SNP [dm6]	A	G	6.500e^-5	0.613	INTERGENIC	TF binding site mE1_TFBS_Kr mE1_TFBS_Ubx
2L	1888640	2L_1888640_SNP [dm3] 2L_1888640_SNP [dm6]	T	G	6.502e^-5	0.613	INTRON CG7337
2L	13498369	2L_13498369_SNP [dm3] 2L_13498369_SNP [dm6]	A	T	6.536e^-5	0.613	NON_SYNONYMOUS_CODING CG42784	TF binding site mE1_TFBS_chinmo
X	943685	X_943685_INS [dm3] X_1049652_INS [dm6]	A	AA	6.594e^-5	0.613	INTRON CR44779
X	12443688	X_12443688_SNP [dm3] X_12549655_SNP [dm6]	G	T	6.596e^-5	0.613	INTRON CG43921
2R	18704109	2R_18704109_SNP [dm3] 2R_22816604_SNP [dm6]	C	T	6.604e^-5	0.613	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
2R	10104995	2R_10104995_SNP [dm3] 2R_14217490_SNP [dm6]	G	A	6.768e^-5	0.625	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	5405435	2L_5405435_SNP [dm3] 2L_5405435_SNP [dm6]	T	C	6.916e^-5	0.63	INTRON H15
3L	3661185	3L_3661185_SNP [dm3] 3L_3661185_SNP [dm6]	T	C	7.082e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7074063	2R_7074063_SNP [dm3] 2R_11186558_SNP [dm6]	C	G	7.146e^-5	0.63	INTRON shn
2L	6408956	2L_6408956_SNP [dm3] 2L_6408956_SNP [dm6]	G	T	7.169e^-5	0.63	INTRON CG42368	TF binding site mE1_TFBS_inv
X	9112990	X_9112990_SNP [dm3] X_9218957_SNP [dm6]	C	T	7.199e^-5	0.63	SYNONYMOUS_CODING t	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3389846	3L_3389846_DEL [dm3] 3L_3389846_DEL [dm6]	CCTTTCAA	GG	7.209e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8261191	3L_8261191_SNP [dm3] 3L_8268091_SNP [dm6]	C	T	7.211e^-5	0.63	INTRON Dscam4
X	9652250	X_9652250_SNP [dm3] X_9758217_SNP [dm6]	T	C	7.217e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	18651083	2R_18651083_SNP [dm3] 2R_22763578_SNP [dm6]	G	A	7.268e^-5	0.63	UPSTREAM CG13527 INTRON CG42260
2R	17260316	2R_17260316_SNP [dm3] 2R_21372811_SNP [dm6]	C	T	7.275e^-5	0.63	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13497446	2L_13497446_SNP [dm3] 2L_13497446_SNP [dm6]	A	T	7.284e^-5	0.63	INTRON CG42784
2L	16618250	2L_16618250_SNP [dm3] 2L_16618250_SNP [dm6]	C	G	7.284e^-5	0.63	INTRON CG42389
3R	23561952	3R_23561952_SNP [dm3] 3R_27736230_SNP [dm6]	C	T	7.304e^-5	0.63	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7408094	2L_7408094_SNP [dm3] 2L_7408094_SNP [dm6]	A	T	7.350e^-5	0.63	DOWNSTREAM CG5181 INTRON CG5177
X	8901325	X_8901325_SNP [dm3] X_9007292_SNP [dm6]	T	C	7.355e^-5	0.63	INTRON rdgA & 1 other
2L	16653049	2L_16653049_SNP [dm3] 2L_16653049_SNP [dm6]	A	T	7.359e^-5	0.63	INTRON CG42389
2L	16806258	2L_16806258_SNP [dm3] 2L_16806258_SNP [dm6]	A	T	7.414e^-5	0.631	INTRON CG13280 & 1 other
3R	9942685	3R_9942685_SNP [dm3] 3R_14116963_SNP [dm6]	G	C	7.452e^-5	0.631	INTRON Kif19A
3L	12035477	3L_12035477_SNP [dm3] 3L_12042377_SNP [dm6]	C	T	7.469e^-5	0.631	UPSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
X	11844826	X_11844826_SNP [dm3] X_11950793_SNP [dm6]	G	C	7.532e^-5	0.633	INTRON cac
X	11554899	X_11554899_SNP [dm3] X_11660866_SNP [dm6]	G	A	7.623e^-5	0.638	INTRON Ptp10D
3R	25638435	3R_25638435_SNP [dm3] 3R_29812713_SNP [dm6]	C	A	7.663e^-5	0.639	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_chinmo
2R	16278998	2R_16278998_SNP [dm3] 2R_20391493_SNP [dm6]	C	A	7.754e^-5	0.643	INTERGENIC
X	604932	X_604932_SNP [dm3] X_710899_SNP [dm6]	T	G	7.799e^-5	0.643	INTRON sdk	transposable element FlyBase
3L	20832543	3L_20832543_SNP [dm3] 3L_20839443_SNP [dm6]	C	T	7.876e^-5	0.643	NON_SYNONYMOUS_CODING CSN3 DOWNSTREAM CG13255
3L	707954	3L_707954_SNP [dm3] 3L_707954_SNP [dm6]	G	T	7.888e^-5	0.643	UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	1281172	2L_1281172_SNP [dm3] 2L_1281172_SNP [dm6]	C	T	7.911e^-5	0.643	INTRON robo3
3R	22514517	3R_22514517_SNP [dm3] 3R_26688795_SNP [dm6]	A	G	7.960e^-5	0.643	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24844268	3R_24844268_SNP [dm3] 3R_29018546_SNP [dm6]	G	C	7.990e^-5	0.643	INTRON wat
3L	2725200	3L_2725200_SNP [dm3] 3L_2725200_SNP [dm6]	T	C	8.074e^-5	0.643	INTRON Mrtf
3L	3411844	3L_3411844_SNP [dm3] 3L_3411844_SNP [dm6]	A	T	8.094e^-5	0.643	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2L	8423994	2L_8423994_SNP [dm3] 2L_8423994_SNP [dm6]	C	T	8.108e^-5	0.643	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9401103	2L_9401103_SNP [dm3] 2L_9401103_SNP [dm6]	G	A	8.163e^-5	0.643	INTRON Shawl
3L	12035495	3L_12035495_INS [dm3] 3L_12042395_INS [dm6]	G	GGTG	8.164e^-5	0.643	UTR_5_PRIME CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
2R	12607354	2R_12607354_SNP [dm3] 2R_16719849_SNP [dm6]	C	A	8.179e^-5	0.643	INTRON CG30463
X	2992820	X_2992820_SNP [dm3] X_3098787_SNP [dm6]	G	A	8.198e^-5	0.643	UPSTREAM kirre INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	16619531	2L_16619531_SNP [dm3] 2L_16619531_SNP [dm6]	G	A	8.335e^-5	0.646	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20947365	2R_20947365_SNP [dm3] 2R_25059842_SNP [dm6]	T	C	8.340e^-5	0.646	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	19999853	X_19999853_INS [dm3] X_20105820_INS [dm6]	A	ATG	8.388e^-5	0.646	INTERGENIC
2L	10305720	2L_10305720_SNP [dm3] 2L_10305720_SNP [dm6]	T	A	8.390e^-5	0.646	INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3L	3380732	3L_3380732_SNP [dm3] 3L_3380732_SNP [dm6]	A	T	8.397e^-5	0.646	DOWNSTREAM CG12014 INTERGENIC
2R	5356080	2R_5356080_SNP [dm3] 2R_9468575_SNP [dm6]	A	G	8.443e^-5	0.646	INTRON Camta
3R	10194055	3R_10194055_DEL [dm3] 3R_14368333_DEL [dm6]	AAA	A	8.471e^-5	0.646	INTRON NK7.1
2R	15947442	2R_15947442_SNP [dm3] 2R_20059937_SNP [dm6]	C	T	8.512e^-5	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14971666	3L_14971666_SNP [dm3] 3L_14978566_SNP [dm6]	T	C	8.641e^-5	0.647	UPSTREAM CR43432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	15075677	2R_15075677_INS [dm3] 2R_19188172_INS [dm6]	A	CG	8.656e^-5	0.647	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15899771	2R_15899771_SNP [dm3] 2R_20012266_SNP [dm6]	T	G	8.658e^-5	0.647	INTERGENIC
3L	4313219	3L_4313219_SNP [dm3] 3L_4313219_SNP [dm6]	C	T	8.713e^-5	0.647	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	8.725e^-5	0.647	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7747063	2L_7747063_SNP [dm3] 2L_7747063_SNP [dm6]	G	A	8.727e^-5	0.647	UPSTREAM CG7211 INTERGENIC
2R	16299417	2R_16299417_SNP [dm3] 2R_20411912_SNP [dm6]	T	A	8.879e^-5	0.652	INTERGENIC
3R	14780171	3R_14780171_INS [dm3] 3R_18954449_INS [dm6]	C	CC	8.904e^-5	0.652	INTRON CG42613 & 1 other
3L	4313230	3L_4313230_SNP [dm3] 3L_4313230_SNP [dm6]	T	A	8.915e^-5	0.652	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26694087	3R_26694087_SNP [dm3] 3R_30868365_SNP [dm6]	T	C	8.972e^-5	0.652	SYNONYMOUS_CODING Cpr100A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12035496	3L_12035496_SNP [dm3] 3L_12042396_SNP [dm6]	A	G	8.973e^-5	0.652	UTR_5_PRIME CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	12035499	3L_12035499_DEL [dm3] 3L_12042399_DEL [dm6]	AAAC	A	9.008e^-5	0.652	UTR_5_PRIME CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo
3L	10107602	3L_10107602_SNP [dm3] 3L_10114502_SNP [dm6]	T	C	9.095e^-5	0.655	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12700491	3R_12700491_DEL [dm3] 3R_16874769_DEL [dm6]	AA	A	9.190e^-5	0.655	INTRON iab-8	TF binding site BDTNP1_TFBS_twi
X	8677700	X_8677700_SNP [dm3] X_8783667_SNP [dm6]	A	T	9.225e^-5	0.655	INTRON Lim1
3L	20000916	3L_20000916_SNP [dm3] 3L_20007816_SNP [dm6]	C	A	9.225e^-5	0.655	INTRON kug	TF binding site mE1_TFBS_zfh1
3L	21088234	3L_21088234_SNP [dm3] 3L_21095134_SNP [dm6]	A	T	9.238e^-5	0.655	INTRON ko
X	1874737	X_1874737_SNP [dm3] X_1980704_SNP [dm6]	C	T	9.252e^-5	0.655	INTRON Hr4
3L	20029985	3L_20029985_SNP [dm3] 3L_20036885_SNP [dm6]	C	G	9.373e^-5	0.661	INTERGENIC
2L	11527670	2L_11527670_SNP [dm3] 2L_11527670_SNP [dm6]	C	A	9.452e^-5	0.664	INTRON CG31705
3L	4057661	3L_4057661_SNP [dm3] 3L_4057661_SNP [dm6]	T	C	9.551e^-5	0.668	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5043548	3L_5043548_SNP [dm3] 3L_5043548_SNP [dm6]	C	T	9.672e^-5	0.672	INTRON Con
3R	21602997	3R_21602997_SNP [dm3] 3R_25777275_SNP [dm6]	T	A	9.673e^-5	0.672	UTR_3_PRIME CG4956 UPSTREAM CG17195
3L	7115745	3L_7115745_SNP [dm3] 3L_7122645_SNP [dm6]	G	A	9.713e^-5	0.672	SYNONYMOUS_CODING form3 DOWNSTREAM msl-3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8415725	3L_8415725_SNP [dm3] 3L_8422625_SNP [dm6]	G	A	9.870e^-5	0.672	UPSTREAM CG32354 INTERGENIC
3L	1674205	3L_1674205_SNP [dm3] 3L_1674205_SNP [dm6]	T	A	9.879e^-5	0.672	UPSTREAM CG7991 INTERGENIC
3L	10006211	3L_10006211_SNP [dm3] 3L_10013111_SNP [dm6]	T	C	9.984e^-5	0.672	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3803252	3L_3803252_SNP [dm3] 3L_3803252_SNP [dm6]	G	T	9.993e^-5	0.672	DOWNSTREAM ntc INTRON CG32264
2L	1453570	2L_1453570_SNP [dm3] 2L_1453570_SNP [dm6]	T	C	1.002e^-4	0.672	INTERGENIC
3L	4313196	3L_4313196_SNP [dm3] 3L_4313196_SNP [dm6]	T	C	1.003e^-4	0.672	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11903992	X_11903992_SNP [dm3] X_12009959_SNP [dm6]	A	C	1.005e^-4	0.672	DOWNSTREAM CG1492 & 1 other INTERGENIC
3R	25677620	3R_25677620_SNP [dm3] 3R_29851898_SNP [dm6]	A	C	1.014e^-4	0.672	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10006149	3L_10006149_SNP [dm3] 3L_10013049_SNP [dm6]	T	G	1.015e^-4	0.672	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3662891	3L_3662891_SNP [dm3] 3L_3662891_SNP [dm6]	A	G	1.016e^-4	0.672	INTERGENIC
2R	15389461	2R_15389461_SNP [dm3] 2R_19501956_SNP [dm6]	C	T	1.017e^-4	0.672	UPSTREAM CG16926 INTERGENIC
3R	25320269	3R_25320269_SNP [dm3] 3R_29494547_SNP [dm6]	T	G	1.020e^-4	0.672	UPSTREAM CG2010 DOWNSTREAM Diedel INTERGENIC
3L	8415670	3L_8415670_SNP [dm3] 3L_8422570_SNP [dm6]	T	A	1.021e^-4	0.672	UPSTREAM CG32354 INTERGENIC
2R	17187252	2R_17187252_SNP [dm3] 2R_21299747_SNP [dm6]	T	C	1.021e^-4	0.672	INTRON CG42672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11904006	X_11904006_SNP [dm3] X_12009973_SNP [dm6]	T	G	1.028e^-4	0.674	DOWNSTREAM CG1492 & 1 other INTERGENIC
3L	4494824	3L_4494824_SNP [dm3] 3L_4494824_SNP [dm6]	G	A	1.041e^-4	0.678	UPSTREAM CR44709 INTERGENIC
3R	20322017	3R_20322017_SNP [dm3] 3R_24496295_SNP [dm6]	C	A	1.043e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18737360	3L_18737360_SNP [dm3] 3L_18744260_SNP [dm6]	C	T	1.062e^-4	0.678	UPSTREAM CG6885 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
X	8425414	X_8425414_SNP [dm3] X_8531381_SNP [dm6]	T	G	1.065e^-4	0.678	INTRON Nrg
3L	14910049	3L_14910049_SNP [dm3] 3L_14916949_SNP [dm6]	C	T	1.068e^-4	0.678	INTRON DCX-EMAP
2R	15531961	2R_15531961_SNP [dm3] 2R_19644456_SNP [dm6]	A	G	1.071e^-4	0.678	DOWNSTREAM CG15124 INTERGENIC
3L	3144756	3L_3144756_SNP [dm3] 3L_3144756_SNP [dm6]	C	A	1.072e^-4	0.678	NON_SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16599672	X_16599672_SNP [dm3] X_16705639_SNP [dm6]	G	A	1.074e^-4	0.678	DOWNSTREAM CG9672 & 1 other INTRON CG4678
2R	18651086	2R_18651086_SNP [dm3] 2R_22763581_SNP [dm6]	T	C	1.077e^-4	0.678	UPSTREAM CG13527 INTRON CG42260
3L	14080565	3L_14080565_SNP [dm3] 3L_14087465_SNP [dm6]	C	A	1.083e^-4	0.678	INTERGENIC
3L	4313226	3L_4313226_SNP [dm3] 3L_4313226_SNP [dm6]	A	T	1.083e^-4	0.678	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4312958	3L_4312958_SNP [dm3] 3L_4312958_SNP [dm6]	C	T	1.087e^-4	0.678	UPSTREAM Claspin INTERGENIC
3L	13962395	3L_13962395_SNP [dm3] 3L_13969295_SNP [dm6]	T	C	1.092e^-4	0.678	NON_SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
2R	11532804	2R_11532804_SNP [dm3] 2R_15645299_SNP [dm6]	G	T	1.097e^-4	0.678	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	17683036	2R_17683036_SNP [dm3] 2R_21795531_SNP [dm6]	T	A	1.098e^-4	0.678	UPSTREAM CG34204 INTERGENIC
X	11813131	X_11813131_SNP [dm3] X_11919098_SNP [dm6]	A	C	1.102e^-4	0.678	UPSTREAM CR32661 DOWNSTREAM CR43157 & 2 others INTERGENIC
2L	2005458	2L_2005458_SNP [dm3] 2L_2005458_SNP [dm6]	A	G	1.107e^-4	0.678	INTRON CG33543
3R	25858012	3R_25858012_SNP [dm3] 3R_30032290_SNP [dm6]	T	C	1.112e^-4	0.678	INTRON Axn	TF binding site mE1_TFBS_HSA
2L	1015110	2L_1015110_SNP [dm3] 2L_1015110_SNP [dm6]	C	T	1.113e^-4	0.678	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11488078	2L_11488078_INS [dm3] 2L_11488078_INS [dm6]	C	CGTAGCCAC	1.116e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13680924	2L_13680924_SNP [dm3] 2L_13680924_SNP [dm6]	C	T	1.118e^-4	0.678	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	16386713	3L_16386713_SNP [dm3] 3L_16393613_SNP [dm6]	T	G	1.121e^-4	0.678	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23647300	3R_23647300_SNP [dm3] 3R_27821578_SNP [dm6]	T	C	1.127e^-4	0.678	INTRON CG34353
3L	1674207	3L_1674207_SNP [dm3] 3L_1674207_SNP [dm6]	T	A	1.132e^-4	0.678	UPSTREAM CG7991 INTERGENIC
X	21146103	X_21146103_SNP [dm3] X_21275076_SNP [dm6]	T	A	1.137e^-4	0.678	INTRON CG32521
2R	10104926	2R_10104926_SNP [dm3] 2R_14217421_SNP [dm6]	G	A	1.138e^-4	0.678	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	20163768	2R_20163768_SNP [dm3] 2R_24276245_SNP [dm6]	T	C	1.138e^-4	0.678	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21144950	X_21144950_SNP [dm3] X_21273923_SNP [dm6]	A	G	1.140e^-4	0.678	INTRON CG32521
2R	16193431	2R_16193431_SNP [dm3] 2R_20305926_SNP [dm6]	C	A	1.142e^-4	0.678	INTRON CG11200
2L	16804152	2L_16804152_SNP [dm3] 2L_16804152_SNP [dm6]	C	G	1.143e^-4	0.678	UPSTREAM CG13272 & 1 other INTRON CG13280
3L	14470595	3L_14470595_DEL [dm3] 3L_14477495_DEL [dm6]	TCAT	T	1.159e^-4	0.682	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2L	10191514	2L_10191514_DEL [dm3] 2L_10191514_DEL [dm6]	AGAGATATATCTCGCTAGAG...	A	1.161e^-4	0.682	UPSTREAM CG31874 INTRON Sur
3R	12701133	3R_12701133_SNP [dm3] 3R_16875411_SNP [dm6]	G	T	1.163e^-4	0.682	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9602472	3R_9602472_SNP [dm3] 3R_13776750_SNP [dm6]	C	A	1.168e^-4	0.682	INTRON CG9297
2R	16105647	2R_16105647_SNP [dm3] 2R_20218142_SNP [dm6]	A	C	1.174e^-4	0.682	INTERGENIC
2L	7408098	2L_7408098_DEL [dm3] 2L_7408098_DEL [dm6]	GG	A	1.181e^-4	0.682	DOWNSTREAM CG5181 INTRON CG5177
3R	17004527	3R_17004527_SNP [dm3] 3R_21178805_SNP [dm6]	G	A	1.186e^-4	0.682	SYNONYMOUS_CODING SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4829751	2L_4829751_SNP [dm3] 2L_4829751_SNP [dm6]	G	T	1.187e^-4	0.682	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10023673	3L_10023673_SNP [dm3] 3L_10030573_SNP [dm6]	T	C	1.188e^-4	0.682	UPSTREAM CR45155 INTRON dpr6
3L	3389762	3L_3389762_SNP [dm3] 3L_3389762_SNP [dm6]	G	A	1.188e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14630489	2R_14630489_SNP [dm3] 2R_18742984_SNP [dm6]	G	T	1.190e^-4	0.682	SYNONYMOUS_CODING CG18609 DOWNSTREAM CG17821 INTRON Hs3st-A
3R	14775484	3R_14775484_SNP [dm3] 3R_18949762_SNP [dm6]	A	G	1.194e^-4	0.683	UPSTREAM CG42613 & 1 other INTRON CG42613
3L	10006169	3L_10006169_SNP [dm3] 3L_10013069_SNP [dm6]	A	T	1.210e^-4	0.69	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16966247	2R_16966247_SNP [dm3] 2R_21078742_SNP [dm6]	A	T	1.217e^-4	0.692	INTRON Treh
3L	20031655	3L_20031655_SNP [dm3] 3L_20038555_SNP [dm6]	T	C	1.224e^-4	0.693	INTERGENIC
2L	3158903	2L_3158903_SNP [dm3] 2L_3158903_SNP [dm6]	A	T	1.229e^-4	0.693	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21337175	3R_21337175_SNP [dm3] 3R_25511453_SNP [dm6]	T	C	1.229e^-4	0.693	INTERGENIC
X	21146104	X_21146104_SNP [dm3] X_21275077_SNP [dm6]	A	T	1.247e^-4	0.7	INTRON CG32521
2L	11701943	2L_11701943_SNP [dm3] 2L_11701943_SNP [dm6]	A	T	1.250e^-4	0.7	INTERGENIC
3L	21867340	3L_21867340_SNP [dm3] 3L_21874240_SNP [dm6]	C	A	1.254e^-4	0.7	INTRON mub
X	14235176	X_14235176_SNP [dm3] X_14341143_SNP [dm6]	T	G	1.281e^-4	0.7	INTRON dpr8
2L	548967	2L_548967_INS [dm3] 2L_548967_INS [dm6]	C	CACACACGCCTC...	1.284e^-4	0.7	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	2741615	2L_2741615_SNP [dm3] 2L_2741615_SNP [dm6]	G	A	1.286e^-4	0.7	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1531221	3L_1531221_SNP [dm3] 3L_1531221_SNP [dm6]	G	C	1.292e^-4	0.7	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3664704	2L_3664704_SNP [dm3] 2L_3664704_SNP [dm6]	C	T	1.293e^-4	0.7	INTRON CG34340
3L	4494820	3L_4494820_SNP [dm3] 3L_4494820_SNP [dm6]	T	G	1.299e^-4	0.7	UPSTREAM CR44709 INTERGENIC
2L	16653044	2L_16653044_SNP [dm3] 2L_16653044_SNP [dm6]	C	T	1.301e^-4	0.7	INTRON CG42389
2L	15258716	2L_15258716_SNP [dm3] 2L_15258716_SNP [dm6]	G	A	1.303e^-4	0.7	SPLICE_SITE_REGION yuri INTRON yuri
X	7269075	X_7269075_INS [dm3] X_7375042_INS [dm6]	G	GTG	1.305e^-4	0.7	INTRON CG1677 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4022342	2L_4022342_SNP [dm3] 2L_4022342_SNP [dm6]	G	A	1.305e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20352329	X_20352329_INS [dm3] X_20481302_INS [dm6]	T	TT	1.309e^-4	0.7	INTRON RhoGAP19D	TF binding site mE1_TFBS_Trl
3R	11596932	3R_11596932_SNP [dm3] 3R_15771210_SNP [dm6]	A	G	1.310e^-4	0.7	INTERGENIC	transposable element FlyBase
2R	681694	2R_681694_SNP [dm3] 2R_4794189_SNP [dm6]	T	A	1.317e^-4	0.7	INTERGENIC	transposable element FlyBase
2L	5614581	2L_5614581_DEL [dm3] 2L_5614581_DEL [dm6]	TTGCTAGGTCT...	T	1.317e^-4	0.7	UPSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	1001588	3L_1001588_SNP [dm3] 3L_1001588_SNP [dm6]	G	T	1.318e^-4	0.7	INTRON trio
3L	1001589	3L_1001589_SNP [dm3] 3L_1001589_SNP [dm6]	A	G	1.318e^-4	0.7	INTRON trio
2L	10203158	2L_10203158_SNP [dm3] 2L_10203158_SNP [dm6]	C	T	1.328e^-4	0.7	DOWNSTREAM RpL7 INTRON CG34159
2L	3940440	2L_3940440_SNP [dm3] 2L_3940440_SNP [dm6]	C	A	1.329e^-4	0.7	INTRON fred
3L	3975041	3L_3975041_SNP [dm3] 3L_3975041_SNP [dm6]	G	A	1.330e^-4	0.7	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	5465599	X_5465599_INS [dm3] X_5571566_INS [dm6]	C	CAAACCCC	1.345e^-4	0.7	INTERGENIC
2R	14915582	2R_14915582_SNP [dm3] 2R_19028077_SNP [dm6]	T	A	1.348e^-4	0.7	INTRON 5-HT1B
2L	20940868	2L_20940868_SNP [dm3] 2L_20940868_SNP [dm6]	A	G	1.356e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4493987	3L_4493987_SNP [dm3] 3L_4493987_SNP [dm6]	G	C	1.366e^-4	0.7	DOWNSTREAM CR44709 INTERGENIC
X	11812858	X_11812858_SNP [dm3] X_11918825_SNP [dm6]	T	A	1.368e^-4	0.7	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
3R	1497775	3R_1497775_SNP [dm3] 3R_5672053_SNP [dm6]	G	T	1.375e^-4	0.7	INTRON Atg17	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	12719820	3L_12719820_SNP [dm3] 3L_12726720_SNP [dm6]	C	G	1.376e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3389841	3L_3389841_SNP [dm3] 3L_3389841_SNP [dm6]	G	T	1.379e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3389861	3L_3389861_SNP [dm3] 3L_3389861_SNP [dm6]	C	A	1.379e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10800500	3L_10800500_SNP [dm3] 3L_10807400_SNP [dm6]	T	C	1.379e^-4	0.7	INTERGENIC
2L	2730889	2L_2730889_SNP [dm3] 2L_2730889_SNP [dm6]	A	G	1.380e^-4	0.7	UTR_5_PRIME CG31689 INTRON CG31689
3R	8792453	3R_8792453_SNP [dm3] 3R_12966731_SNP [dm6]	G	A	1.410e^-4	0.7	START_GAINED CG14384 UTR_5_PRIME CG14384 UPSTREAM CG14384 DOWNSTREAM Cyp304a1 INTRON grsm
3R	26927860	3R_26927860_SNP [dm3] 3R_31102138_SNP [dm6]	G	A	1.410e^-4	0.7	UPSTREAM CG15553 INTERGENIC
3R	22237847	3R_22237847_SNP [dm3] 3R_26412125_SNP [dm6]	G	T	1.412e^-4	0.7	INTERGENIC
3R	9956492	3R_9956492_SNP [dm3] 3R_14130770_SNP [dm6]	A	C	1.417e^-4	0.7	NON_SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3L	1003090	3L_1003090_SNP [dm3] 3L_1003090_SNP [dm6]	C	A	1.428e^-4	0.7	INTRON trio
3R	10814081	3R_10814081_INS [dm3] 3R_14988359_INS [dm6]	G	GAATGATG	1.430e^-4	0.7	INTERGENIC
3L	13067453	3L_13067453_SNP [dm3] 3L_13074353_SNP [dm6]	T	C	1.435e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5250325	3L_5250325_SNP [dm3] 3L_5257225_SNP [dm6]	A	C	1.439e^-4	0.7	INTRON shep
3R	80650	3R_80650_SNP [dm3] 3R_4254928_SNP [dm6]	T	C	1.441e^-4	0.7	SYNONYMOUS_CODING TwdlV	TF binding site mE1_TFBS_chinmo
3L	13941734	3L_13941734_SNP [dm3] 3L_13948634_SNP [dm6]	A	C	1.445e^-4	0.7	INTRON CG32137
X	5830085	X_5830085_SNP [dm3] X_5936052_SNP [dm6]	C	T	1.458e^-4	0.7	INTRON CG3726
3R	19147743	3R_19147743_SNP [dm3] 3R_23322021_SNP [dm6]	C	G	1.459e^-4	0.7	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12727299	3L_12727299_SNP [dm3] 3L_12734199_SNP [dm6]	G	A	1.466e^-4	0.7	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9960352	3R_9960352_INS [dm3] 3R_14134630_INS [dm6]	T	TCT	1.467e^-4	0.7	INTERGENIC
3R	406510	3R_406510_SNP [dm3] 3R_4580788_SNP [dm6]	A	T	1.467e^-4	0.7	INTERGENIC	transposable element FlyBase
2R	14793138	2R_14793138_SNP [dm3] 2R_18905633_SNP [dm6]	C	G	1.478e^-4	0.7	INTRON sano
2L	16650318	2L_16650318_SNP [dm3] 2L_16650318_SNP [dm6]	C	A	1.480e^-4	0.7	INTRON CG42389
3L	16802630	3L_16802630_INS [dm3] 3L_16809530_INS [dm6]	A	AAATC	1.488e^-4	0.7	DOWNSTREAM CG13024 INTRON nudC
3L	12275345	3L_12275345_SNP [dm3] 3L_12282245_SNP [dm6]	G	A	1.489e^-4	0.7	DOWNSTREAM CG10426 INTERGENIC
2R	7328741	2R_7328741_SNP [dm3] 2R_11441236_SNP [dm6]	T	C	1.493e^-4	0.7	SYNONYMOUS_CODING CG7777	TF binding site mE1_TFBS_cad
3R	12700519	3R_12700519_SNP [dm3] 3R_16874797_SNP [dm6]	T	A	1.493e^-4	0.7	INTRON iab-8	TF binding site BDTNP1_TFBS_twi
2R	8237767	2R_8237767_SNP [dm3] 2R_12350262_SNP [dm6]	A	G	1.497e^-4	0.7	SYNONYMOUS_CODING ana3	TF binding site mE1_TFBS_sens
X	6954164	X_6954164_SNP [dm3] X_7060131_SNP [dm6]	T	G	1.510e^-4	0.7	INTRON CG12541	TF binding site BDTNP1_TFBS_prd
2L	15947032	2L_15947032_INS [dm3] 2L_15947032_INS [dm6]	A	ACTT	1.512e^-4	0.7	INTRON beat-Ib
3L	14460503	3L_14460503_SNP [dm3] 3L_14467403_SNP [dm6]	A	T	1.513e^-4	0.7	INTRON bbg
2R	15532002	2R_15532002_SNP [dm3] 2R_19644497_SNP [dm6]	C	G	1.515e^-4	0.7	DOWNSTREAM CG15124 INTERGENIC
3R	14737940	3R_14737940_SNP [dm3] 3R_18912218_SNP [dm6]	C	T	1.518e^-4	0.7	NON_SYNONYMOUS_CODING CG14291	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16193374	2R_16193374_SNP [dm3] 2R_20305869_SNP [dm6]	T	C	1.523e^-4	0.7	INTRON CG11200
3L	12727296	3L_12727296_SNP [dm3] 3L_12734196_SNP [dm6]	A	T	1.525e^-4	0.7	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12727300	3L_12727300_SNP [dm3] 3L_12734200_SNP [dm6]	T	A	1.525e^-4	0.7	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10005881	3L_10005881_SNP [dm3] 3L_10012781_SNP [dm6]	T	G	1.526e^-4	0.7	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	558161	X_558161_SNP [dm3] X_664128_SNP [dm6]	C	A	1.532e^-4	0.7	INTERGENIC
X	6975816	X_6975816_SNP [dm3] X_7081783_SNP [dm6]	T	A	1.533e^-4	0.7	INTRON Sxl
X	15575382	X_15575382_SNP [dm3] X_15681349_SNP [dm6]	C	G	1.534e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19816682	2L_19816682_SNP [dm3] 2L_19816682_SNP [dm6]	C	T	1.538e^-4	0.7	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	16716978	X_16716978_SNP [dm3] X_16822945_SNP [dm6]	C	T	1.541e^-4	0.7	INTRON CG4829
3R	14699481	3R_14699481_SNP [dm3] 3R_18873759_SNP [dm6]	G	T	1.551e^-4	0.7	INTERGENIC
3R	12700970	3R_12700970_SNP [dm3] 3R_16875248_SNP [dm6]	C	T	1.551e^-4	0.7	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4495283	3L_4495283_SNP [dm3] 3L_4495283_SNP [dm6]	C	A	1.559e^-4	0.7	UPSTREAM CR44709 INTERGENIC
3R	421585	3R_421585_SNP [dm3] 3R_4595863_SNP [dm6]	C	T	1.564e^-4	0.7	DOWNSTREAM CR44317 INTERGENIC
2L	16653071	2L_16653071_SNP [dm3] 2L_16653071_SNP [dm6]	C	T	1.564e^-4	0.7	INTRON CG42389	TF binding site mE1_TFBS_inv
2R	17683187	2R_17683187_SNP [dm3] 2R_21795682_SNP [dm6]	G	T	1.564e^-4	0.7	UPSTREAM CG34204 INTERGENIC
3R	16911035	3R_16911035_SNP [dm3] 3R_21085313_SNP [dm6]	A	G	1.566e^-4	0.7	SYNONYMOUS_CODING RhoGAP93B
3L	17240173	3L_17240173_SNP [dm3] 3L_17247073_SNP [dm6]	C	T	1.583e^-4	0.7	INTRON CR43870
X	16819839	X_16819839_SNP [dm3] X_16925806_SNP [dm6]	T	A	1.583e^-4	0.7	INTRON CG4928
3L	3922363	3L_3922363_INS [dm3] 3L_3922363_INS [dm6]	T	TT	1.587e^-4	0.7	INTRON Eip63F-1
2L	2940042	2L_2940042_SNP [dm3] 2L_2940042_SNP [dm6]	C	T	1.596e^-4	0.7	INTRON lilli
2L	13288893	2L_13288893_SNP [dm3] 2L_13288893_SNP [dm6]	T	C	1.608e^-4	0.7	SYNONYMOUS_CODING Uvrag EXON CR44972
X	16717027	X_16717027_SNP [dm3] X_16822994_SNP [dm6]	T	C	1.611e^-4	0.7	INTRON CG4829
X	16717048	X_16717048_SNP [dm3] X_16823015_SNP [dm6]	A	C	1.611e^-4	0.7	INTRON CG4829
X	16717054	X_16717054_SNP [dm3] X_16823021_SNP [dm6]	T	C	1.611e^-4	0.7	INTRON CG4829
X	16717068	X_16717068_SNP [dm3] X_16823035_SNP [dm6]	T	C	1.611e^-4	0.7	INTRON CG4829
2L	16618071	2L_16618071_SNP [dm3] 2L_16618071_SNP [dm6]	T	G	1.615e^-4	0.7	INTRON CG42389
3L	13067067	3L_13067067_SNP [dm3] 3L_13073967_SNP [dm6]	G	A	1.616e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	515834	2L_515834_SNP [dm3] 2L_515834_SNP [dm6]	G	A	1.618e^-4	0.7	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	20031691	3L_20031691_SNP [dm3] 3L_20038591_SNP [dm6]	A	G	1.620e^-4	0.7	INTERGENIC
3L	14080524	3L_14080524_SNP [dm3] 3L_14087424_SNP [dm6]	C	T	1.626e^-4	0.7	INTERGENIC
2R	16720346	2R_16720346_SNP [dm3] 2R_20832841_SNP [dm6]	C	A	1.627e^-4	0.7	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	27210004	3R_27210004_SNP [dm3] 3R_31384282_SNP [dm6]	G	A	1.635e^-4	0.7	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16623523	2L_16623523_SNP [dm3] 2L_16623523_SNP [dm6]	G	C	1.641e^-4	0.7	INTRON CG42389
2R	11385230	2R_11385230_SNP [dm3] 2R_15497725_SNP [dm6]	A	T	1.641e^-4	0.7	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	3338757	3R_3338757_SNP [dm3] 3R_7513035_SNP [dm6]	A	T	1.645e^-4	0.7	INTRON alpha-Est8
2R	10230496	2R_10230496_SNP [dm3] 2R_14342991_SNP [dm6]	G	A	1.647e^-4	0.7	INTRON Shroom
2R	17620328	2R_17620328_SNP [dm3] 2R_21732823_SNP [dm6]	T	C	1.648e^-4	0.7	INTERGENIC
3R	14743255	3R_14743255_SNP [dm3] 3R_18917533_SNP [dm6]	G	A	1.651e^-4	0.7	UPSTREAM Xrp1 INTRON Xrp1	transposable element FlyBase
3L	3270465	3L_3270465_SNP [dm3] 3L_3270465_SNP [dm6]	A	T	1.651e^-4	0.7	UPSTREAM CG14960 INTERGENIC
3L	10006180	3L_10006180_SNP [dm3] 3L_10013080_SNP [dm6]	G	A	1.651e^-4	0.7	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9591529	3L_9591529_SNP [dm3] 3L_9598429_SNP [dm6]	A	G	1.654e^-4	0.7	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC
2R	11055979	2R_11055979_SNP [dm3] 2R_15168474_SNP [dm6]	T	G	1.661e^-4	0.7	INTRON igl
X	11844756	X_11844756_DEL [dm3] X_11950723_DEL [dm6]	ATA	A	1.663e^-4	0.7	INTRON cac
2L	10417065	2L_10417065_SNP [dm3] 2L_10417065_SNP [dm6]	A	G	1.675e^-4	0.7	NON_SYNONYMOUS_CODING Klp31E	TF binding site BDTNP1_TFBS_twi
2L	15080142	2L_15080142_SNP [dm3] 2L_15080142_SNP [dm6]	T	C	1.676e^-4	0.7	INTRON CG15270
3R	26218932	3R_26218932_SNP [dm3] 3R_30393210_SNP [dm6]	C	T	1.678e^-4	0.7	INTERGENIC
3R	26218973	3R_26218973_DEL [dm3] 3R_30393251_DEL [dm6]	AGTATGAC	A	1.678e^-4	0.7	INTERGENIC
3L	13426363	3L_13426363_INS [dm3] 3L_13433263_INS [dm6]	T	TT	1.678e^-4	0.7	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
3R	25471054	3R_25471054_SNP [dm3] 3R_29645332_SNP [dm6]	G	A	1.682e^-4	0.7	INTRON Dop1R2
3L	4495165	3L_4495165_SNP [dm3] 3L_4495165_SNP [dm6]	A	C	1.686e^-4	0.7	UPSTREAM CR44709 INTERGENIC
2L	13988009	2L_13988009_SNP [dm3] 2L_13988009_SNP [dm6]	A	G	1.695e^-4	0.7	INTRON rk
3L	3411836	3L_3411836_SNP [dm3] 3L_3411836_SNP [dm6]	C	G	1.695e^-4	0.7	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	16599751	X_16599751_SNP [dm3] X_16705718_SNP [dm6]	G	A	1.695e^-4	0.7	DOWNSTREAM CG9672 & 1 other INTRON CG4678
3R	16044509	3R_16044509_SNP [dm3] 3R_20218787_SNP [dm6]	G	A	1.697e^-4	0.7	INTRON Nlg4
2L	11839301	2L_11839301_SNP [dm3] 2L_11839301_SNP [dm6]	T	C	1.705e^-4	0.7	UPSTREAM Sfp33A3 INTRON Pde1c EXON CR43937
2L	16803711	2L_16803711_SNP [dm3] 2L_16803711_SNP [dm6]	G	T	1.721e^-4	0.7	INTRON CG13280
3R	14775313	3R_14775313_SNP [dm3] 3R_18949591_SNP [dm6]	T	C	1.730e^-4	0.7	UPSTREAM CG42613 & 1 other INTRON CG42613
2L	16632482	2L_16632482_SNP [dm3] 2L_16632482_SNP [dm6]	C	G	1.732e^-4	0.7	INTRON CG42389
2L	4829733	2L_4829733_SNP [dm3] 2L_4829733_SNP [dm6]	C	T	1.739e^-4	0.7	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6205553	2L_6205553_SNP [dm3] 2L_6205553_SNP [dm6]	C	A	1.741e^-4	0.7	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4096026	3L_4096026_SNP [dm3] 3L_4096026_SNP [dm6]	G	A	1.743e^-4	0.7	SYNONYMOUS_CODING CG14995 UTR_3_PRIME CG14995 INTRON CG14995	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13067042	3L_13067042_SNP [dm3] 3L_13073942_SNP [dm6]	G	A	1.753e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9687008	3R_9687008_SNP [dm3] 3R_13861286_SNP [dm6]	T	A	1.757e^-4	0.7	INTERGENIC
2L	16618129	2L_16618129_SNP [dm3] 2L_16618129_SNP [dm6]	G	T	1.759e^-4	0.7	INTRON CG42389
X	19744565	X_19744565_SNP [dm3] X_19850532_SNP [dm6]	G	A	1.759e^-4	0.7	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22749171	3R_22749171_SNP [dm3] 3R_26923449_SNP [dm6]	G	A	1.762e^-4	0.7	INTRON sda
X	14658044	X_14658044_SNP [dm3] X_14764011_SNP [dm6]	C	T	1.763e^-4	0.7	INTRON CG15890
3R	23115934	3R_23115934_SNP [dm3] 3R_27290212_SNP [dm6]	T	C	1.767e^-4	0.7	SYNONYMOUS_CODING Hmu	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10508169	3L_10508169_INS [dm3] 3L_10515069_INS [dm6]	T	TT	1.768e^-4	0.7	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9168349	3L_9168349_SNP [dm3] 3L_9175249_SNP [dm6]	G	T	1.775e^-4	0.7	INTRON Rdl
3L	20834804	3L_20834804_SNP [dm3] 3L_20841704_SNP [dm6]	G	T	1.777e^-4	0.7	UPSTREAM CG11456 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	16042089	3L_16042089_SNP [dm3] 3L_16048989_SNP [dm6]	A	G	1.778e^-4	0.7	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16817735	X_16817735_SNP [dm3] X_16923702_SNP [dm6]	G	T	1.786e^-4	0.7	INTRON CG4928
2L	7408093	2L_7408093_SNP [dm3] 2L_7408093_SNP [dm6]	A	G	1.793e^-4	0.7	DOWNSTREAM CG5181 INTRON CG5177
2R	19071292	2R_19071292_SNP [dm3] 2R_23183769_SNP [dm6]	G	T	1.804e^-4	0.7	UPSTREAM CG13539 INTRON CG34371
3L	4313227	3L_4313227_SNP [dm3] 3L_4313227_SNP [dm6]	A	C	1.804e^-4	0.7	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7408111	2L_7408111_SNP [dm3] 2L_7408111_SNP [dm6]	A	G	1.805e^-4	0.7	DOWNSTREAM CG5181 INTRON CG5177
X	10871665	X_10871665_SNP [dm3] X_10977632_SNP [dm6]	T	C	1.811e^-4	0.7	INTRON CG42339
2R	17116128	2R_17116128_SNP [dm3] 2R_21228623_SNP [dm6]	T	A	1.816e^-4	0.7	INTRON ASPP
3L	5626451	3L_5626451_SNP [dm3] 3L_5633351_SNP [dm6]	A	T	1.817e^-4	0.7	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16930845	2R_16930845_DEL [dm3] 2R_21043340_DEL [dm6]	TT	C	1.824e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15769148	3R_15769148_SNP [dm3] 3R_19943426_SNP [dm6]	C	G	1.826e^-4	0.7	INTRON Hs6st
3L	22910302	3L_22910302_SNP [dm3] 3L_22917202_SNP [dm6]	A	G	1.828e^-4	0.7	INTRON CG12768
3L	11696753	3L_11696753_SNP [dm3] 3L_11703653_SNP [dm6]	C	G	1.850e^-4	0.7	INTRON CG11658
3L	819178	3L_819178_SNP [dm3] 3L_819178_SNP [dm6]	T	C	1.851e^-4	0.7	INTERGENIC
2L	3940730	2L_3940730_SNP [dm3] 2L_3940730_SNP [dm6]	G	A	1.853e^-4	0.7	INTRON fred
2R	16295343	2R_16295343_SNP [dm3] 2R_20407838_SNP [dm6]	C	A	1.859e^-4	0.7	INTERGENIC
2R	16934113	2R_16934113_SNP [dm3] 2R_21046608_SNP [dm6]	A	G	1.868e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	744107	2L_744107_SNP [dm3] 2L_744107_SNP [dm6]	T	C	1.874e^-4	0.7	UTR_5_PRIME Eaat2 INTRON Eaat2
3R	25408854	3R_25408854_SNP [dm3] 3R_29583132_SNP [dm6]	A	T	1.877e^-4	0.7	INTERGENIC
X	4894745	X_4894745_SNP [dm3] X_5000712_SNP [dm6]	T	C	1.880e^-4	0.7	INTRON CR44833	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10517724	3R_10517724_SNP [dm3] 3R_14692002_SNP [dm6]	G	A	1.881e^-4	0.7	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	25858547	3R_25858547_SNP [dm3] 3R_30032825_SNP [dm6]	C	A	1.883e^-4	0.7	INTRON Axn	TF binding site mE1_TFBS_cad
2L	7894640	2L_7894640_SNP [dm3] 2L_7894640_SNP [dm6]	A	C	1.887e^-4	0.7	NON_SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8215694	X_8215694_SNP [dm3] X_8321661_SNP [dm6]	G	A	1.890e^-4	0.7	INTRON nAChRalpha3
3L	15515614	3L_15515614_SNP [dm3] 3L_15522514_SNP [dm6]	T	C	1.892e^-4	0.7	UPSTREAM CR43159 DOWNSTREAM yellow-k INTRON CG7945	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1948592	2L_1948592_SNP [dm3] 2L_1948592_SNP [dm6]	G	A	1.894e^-4	0.7	INTERGENIC	regulatory region REDfly_CRMs
X	12668803	X_12668803_SNP [dm3] X_12774770_SNP [dm6]	T	C	1.900e^-4	0.7	UTR_3_PRIME CG32647 DOWNSTREAM CG32647
3R	5148912	3R_5148912_DEL [dm3] 3R_9323190_DEL [dm6]	GA	G	1.901e^-4	0.7	DOWNSTREAM HP1e INTRON CG8861
3R	18819213	3R_18819213_SNP [dm3] 3R_22993491_SNP [dm6]	A	C	1.902e^-4	0.7	UTR_5_PRIME Nha2 INTRON Nha2
2R	14915359	2R_14915359_SNP [dm3] 2R_19027854_SNP [dm6]	C	T	1.905e^-4	0.7	INTRON 5-HT1B
2L	2232251	2L_2232251_SNP [dm3] 2L_2232251_SNP [dm6]	A	T	1.907e^-4	0.7	SPLICE_SITE_REGION Sec24CD INTRON Sec24CD
3L	9654910	3L_9654910_SNP [dm3] 3L_9661810_SNP [dm6]	G	A	1.923e^-4	0.7	INTRON fry	TF binding site BDTNP1_TFBS_twi
3L	5170845	3L_5170845_SNP [dm3] 3L_5177745_SNP [dm6]	C	A	1.928e^-4	0.7	INTRON shep
3L	14470581	3L_14470581_SNP [dm3] 3L_14477481_SNP [dm6]	G	A	1.928e^-4	0.7	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
3L	10005895	3L_10005895_SNP [dm3] 3L_10012795_SNP [dm6]	T	G	1.930e^-4	0.7	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4857130	X_4857130_SNP [dm3] X_4963097_SNP [dm6]	A	C	1.936e^-4	0.7	INTRON CR44833
X	8702752	X_8702752_SNP [dm3] X_8808719_SNP [dm6]	A	G	1.944e^-4	0.7	INTERGENIC
2L	15500089	2L_15500089_SNP [dm3] 2L_15500089_SNP [dm6]	T	C	1.946e^-4	0.7	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11079467	2R_11079467_SNP [dm3] 2R_15191962_SNP [dm6]	C	T	1.946e^-4	0.7	DOWNSTREAM Sfp51E INTERGENIC
3R	24903754	3R_24903754_SNP [dm3] 3R_29078032_SNP [dm6]	G	C	1.947e^-4	0.7	INTRON CG11873
2R	4554060	2R_4554060_SNP [dm3] 2R_8666555_SNP [dm6]	G	A	1.949e^-4	0.7	INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5830063	X_5830063_SNP [dm3] X_5936030_SNP [dm6]	C	T	1.951e^-4	0.7	INTRON CG3726
3L	8984304	3L_8984304_SNP [dm3] 3L_8991204_SNP [dm6]	T	C	1.952e^-4	0.7	UTR_3_PRIME smg UPSTREAM CG5280 INTRON smg
3R	12699839	3R_12699839_SNP [dm3] 3R_16874117_SNP [dm6]	T	C	1.953e^-4	0.7	INTRON iab-8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6927336	2R_6927336_SNP [dm3] 2R_11039831_SNP [dm6]	A	G	1.960e^-4	0.7	INTRON luna	TF binding site mE1_TFBS_chinmo
X	8502083	X_8502083_SNP [dm3] X_8608050_SNP [dm6]	C	A	1.978e^-4	0.7	INTERGENIC
3R	25850804	3R_25850804_SNP [dm3] 3R_30025082_SNP [dm6]	C	T	1.981e^-4	0.7	INTRON Axn
2L	10070238	2L_10070238_SNP [dm3] 2L_10070238_SNP [dm6]	A	G	1.982e^-4	0.7	INTRON CG44153
3R	22238284	3R_22238284_SNP [dm3] 3R_26412562_SNP [dm6]	A	G	1.982e^-4	0.7	INTERGENIC
2L	16803756	2L_16803756_SNP [dm3] 2L_16803756_SNP [dm6]	A	C	1.986e^-4	0.7	INTRON CG13280
2L	7664552	2L_7664552_SNP [dm3] 2L_7664552_SNP [dm6]	G	A	1.986e^-4	0.7	INTRON Slob
3L	14729839	3L_14729839_SNP [dm3] 3L_14736739_SNP [dm6]	G	C	1.990e^-4	0.7	INTRON ome
2L	1015964	2L_1015964_SNP [dm3] 2L_1015964_SNP [dm6]	A	G	1.997e^-4	0.7	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16819838	X_16819838_SNP [dm3] X_16925805_SNP [dm6]	G	A	1.999e^-4	0.7	INTRON CG4928
3L	7054166	3L_7054166_SNP [dm3] 3L_7061066_SNP [dm6]	G	A	2.003e^-4	0.7	INTRON CG8641
2R	13601937	2R_13601937_SNP [dm3] 2R_17714432_SNP [dm6]	T	A	2.009e^-4	0.7	INTRON CG6424
3L	10005899	3L_10005899_SNP [dm3] 3L_10012799_SNP [dm6]	G	T	2.010e^-4	0.7	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	707077	3L_707077_SNP [dm3] 3L_707077_SNP [dm6]	A	G	2.013e^-4	0.7	SYNONYMOUS_CODING CG13895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	1620718	2L_1620718_SNP [dm3] 2L_1620718_SNP [dm6]	T	C	2.020e^-4	0.7	EXON CR44603	TF binding site BDTNP1_TFBS_dl
2R	18651268	2R_18651268_SNP [dm3] 2R_22763763_SNP [dm6]	C	G	2.023e^-4	0.7	START_GAINED CG13527 UTR_5_PRIME CG13527 INTRON CG42260
3L	4057633	3L_4057633_SNP [dm3] 3L_4057633_SNP [dm6]	T	A	2.034e^-4	0.7	INTRON CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18024424	3L_18024424_SNP [dm3] 3L_18031324_SNP [dm6]	C	T	2.037e^-4	0.7	INTRON Eip75B
2R	10346473	2R_10346473_SNP [dm3] 2R_14458968_SNP [dm6]	T	C	2.041e^-4	0.7	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13927637	3R_13927637_SNP [dm3] 3R_18101915_SNP [dm6]	G	T	2.043e^-4	0.7	INTRON sr
X	2766962	X_2766962_SNP [dm3] X_2872929_SNP [dm6]	C	T	2.052e^-4	0.7	UPSTREAM CG14416 INTRON kirre
2L	5592373	2L_5592373_SNP [dm3] 2L_5592373_SNP [dm6]	A	T	2.056e^-4	0.7	INTERGENIC
3R	25099945	3R_25099945_SNP [dm3] 3R_29274223_SNP [dm6]	T	G	2.066e^-4	0.7	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	10269033	2R_10269033_SNP [dm3] 2R_14381528_SNP [dm6]	T	C	2.074e^-4	0.7	INTRON Dh44-R1
3L	16732644	3L_16732644_SNP [dm3] 3L_16739544_SNP [dm6]	C	T	2.078e^-4	0.7	DOWNSTREAM CG9701 INTERGENIC
2L	10203971	2L_10203971_SNP [dm3] 2L_10203971_SNP [dm6]	C	T	2.078e^-4	0.7	DOWNSTREAM CG5734 INTRON CG34159	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8913499	2R_8913499_SNP [dm3] 2R_13025994_SNP [dm6]	A	G	2.081e^-4	0.7	INTERGENIC
3R	26784089	3R_26784089_DEL [dm3] 3R_30958367_DEL [dm6]	GCAATTCG	G	2.085e^-4	0.7	INTERGENIC
X	8851447	X_8851447_SNP [dm3] X_8957414_SNP [dm6]	A	G	2.092e^-4	0.7	INTRON rdgA
X	13733529	X_13733529_SNP [dm3] X_13839496_SNP [dm6]	G	A	2.093e^-4	0.7	INTRON AMPdeam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	9817661	3L_9817661_SNP [dm3] 3L_9824561_SNP [dm6]	T	C	2.098e^-4	0.7	SYNONYMOUS_CODING CG43897 UPSTREAM Ilp5
3R	18389442	3R_18389442_SNP [dm3] 3R_22563720_SNP [dm6]	A	G	2.100e^-4	0.7	INTERGENIC
3R	22096632	3R_22096632_SNP [dm3] 3R_26270910_SNP [dm6]	C	T	2.100e^-4	0.7	INTRON CG6154
X	18806982	X_18806982_SNP [dm3] X_18912949_SNP [dm6]	C	A	2.101e^-4	0.7	DOWNSTREAM CR44708 INTERGENIC
3L	10984791	3L_10984791_SNP [dm3] 3L_10991691_SNP [dm6]	C	A	2.103e^-4	0.7	INTRON klu	TF binding site BDTNP1_TFBS_dl
3L	11345639	3L_11345639_INS [dm3] 3L_11352539_INS [dm6]	T	TC	2.109e^-4	0.7	INTERGENIC
X	16717031	X_16717031_SNP [dm3] X_16822998_SNP [dm6]	C	T	2.114e^-4	0.7	INTRON CG4829
3R	22514614	3R_22514614_SNP [dm3] 3R_26688892_SNP [dm6]	T	C	2.118e^-4	0.7	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8265267	3L_8265267_SNP [dm3] 3L_8272167_SNP [dm6]	C	T	2.120e^-4	0.7	INTRON Dscam4	TF binding site mE1_TFBS_cad
3L	15338685	3L_15338685_SNP [dm3] 3L_15345585_SNP [dm6]	G	A	2.120e^-4	0.7	INTERGENIC
X	11299678	X_11299678_SNP [dm3] X_11405645_SNP [dm6]	T	C	2.125e^-4	0.7	SYNONYMOUS_CODING dlg1	TF binding site mE1_TFBS_HSA
2L	5605771	2L_5605771_SNP [dm3] 2L_5605771_SNP [dm6]	C	A	2.129e^-4	0.7	INTRON CG14010
3R	26837700	3R_26837700_SNP [dm3] 3R_31011978_SNP [dm6]	T	C	2.131e^-4	0.7	INTRON 5-HT7
3R	26931465	3R_26931465_SNP [dm3] 3R_31105743_SNP [dm6]	T	C	2.133e^-4	0.7	DOWNSTREAM CG11318 INTERGENIC
3R	6054971	3R_6054971_SNP [dm3] 3R_10229249_SNP [dm6]	T	A	2.134e^-4	0.7	INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10305725	2L_10305725_SNP [dm3] 2L_10305725_SNP [dm6]	G	A	2.134e^-4	0.7	INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	15250963	2L_15250963_INS [dm3] 2L_15250963_INS [dm6]	A	CTACTTTCAAAATAC...	2.141e^-4	0.7	INTRON dao	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12726774	3L_12726774_SNP [dm3] 3L_12733674_SNP [dm6]	T	A	2.149e^-4	0.7	SYNONYMOUS_CODING SmD1	TF binding site BDTNP1_TFBS_dl
2L	16653029	2L_16653029_DEL [dm3] 2L_16653029_DEL [dm6]	CAAGTTAAAGTG...	C	2.151e^-4	0.7	INTRON CG42389
2L	4913762	2L_4913762_SNP [dm3] 2L_4913762_SNP [dm6]	C	A	2.156e^-4	0.7	INTRON hoe1
2L	2013786	2L_2013786_INS [dm3] 2L_2013786_INS [dm6]	G	GTTAAAATGCT...	2.158e^-4	0.7	UPSTREAM tRNA:CR31669 INTRON CG4238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13426675	3L_13426675_SNP [dm3] 3L_13433575_SNP [dm6]	G	C	2.171e^-4	0.7	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
2L	4829727	2L_4829727_SNP [dm3] 2L_4829727_SNP [dm6]	G	C	2.172e^-4	0.7	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1015059	2L_1015059_SNP [dm3] 2L_1015059_SNP [dm6]	G	A	2.182e^-4	0.7	SYNONYMOUS_CODING IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11536696	3L_11536696_SNP [dm3] 3L_11543596_SNP [dm6]	A	G	2.184e^-4	0.7	INTRON Mob2
2R	17116120	2R_17116120_SNP [dm3] 2R_21228615_SNP [dm6]	T	A	2.186e^-4	0.7	INTRON ASPP
2L	10526477	2L_10526477_SNP [dm3] 2L_10526477_SNP [dm6]	C	G	2.186e^-4	0.7	INTERGENIC
3L	14573570	3L_14573570_SNP [dm3] 3L_14580470_SNP [dm6]	C	T	2.187e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5886462	2R_5886462_SNP [dm3] 2R_9998957_SNP [dm6]	C	G	2.193e^-4	0.7	INTRON Pka-R2
X	8702308	X_8702308_SNP [dm3] X_8808275_SNP [dm6]	A	G	2.210e^-4	0.7	INTERGENIC
3L	710314	3L_710314_SNP [dm3] 3L_710314_SNP [dm6]	T	G	2.210e^-4	0.7	NON_SYNONYMOUS_CODING CkIIalpha-i3 UTR_5_PRIME CkIIalpha-i3 DOWNSTREAM CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5254092	3L_5254092_SNP [dm3] 3L_5260992_SNP [dm6]	G	A	2.214e^-4	0.7	INTRON shep
X	8702291	X_8702291_SNP [dm3] X_8808258_SNP [dm6]	A	T	2.230e^-4	0.7	INTERGENIC
2L	5502553	2L_5502553_SNP [dm3] 2L_5502553_SNP [dm6]	A	C	2.232e^-4	0.7	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8357300	3R_8357300_SNP [dm3] 3R_12531578_SNP [dm6]	C	T	2.232e^-4	0.7	INTRON Octbeta3R
2R	10286890	2R_10286890_SNP [dm3] 2R_14399385_SNP [dm6]	C	A	2.233e^-4	0.7	INTERGENIC
2R	10286893	2R_10286893_SNP [dm3] 2R_14399388_SNP [dm6]	T	G	2.233e^-4	0.7	INTERGENIC
2R	5704627	2R_5704627_SNP [dm3] 2R_9817122_SNP [dm6]	C	T	2.234e^-4	0.7	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
3R	25794183	3R_25794183_SNP [dm3] 3R_29968461_SNP [dm6]	G	C	2.236e^-4	0.7	INTRON TkR99D
3L	15479478	3L_15479478_SNP [dm3] 3L_15486378_SNP [dm6]	A	T	2.239e^-4	0.7	UPSTREAM Ran-like INTERGENIC
3R	25119539	3R_25119539_SNP [dm3] 3R_29293817_SNP [dm6]	T	C	2.243e^-4	0.7	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	18701127	2R_18701127_SNP [dm3] 2R_22813622_SNP [dm6]	C	T	2.244e^-4	0.7	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_cad
3L	15481214	3L_15481214_SNP [dm3] 3L_15488114_SNP [dm6]	G	A	2.246e^-4	0.7	INTERGENIC
3L	12706652	3L_12706652_SNP [dm3] 3L_12713552_SNP [dm6]	C	A	2.255e^-4	0.7	INTERGENIC
3L	10003474	3L_10003474_INS [dm3] 3L_10010374_INS [dm6]	A	AA	2.256e^-4	0.7	INTRON dpr6
3L	8415695	3L_8415695_INS [dm3] 3L_8422595_INS [dm6]	A	ACCCGTTTAACCTTAATCTA...	2.258e^-4	0.7	UPSTREAM CG32354 INTERGENIC
3L	8415722	3L_8415722_SNP [dm3] 3L_8422622_SNP [dm6]	A	G	2.258e^-4	0.7	UPSTREAM CG32354 INTERGENIC
3L	8415726	3L_8415726_SNP [dm3] 3L_8422626_SNP [dm6]	G	T	2.258e^-4	0.7	UPSTREAM CG32354 INTERGENIC
3L	2773732	3L_2773732_SNP [dm3] 3L_2773732_SNP [dm6]	C	A	2.262e^-4	0.7	SYNONYMOUS_CODING CG12093 UPSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16041949	3L_16041949_DEL [dm3] 3L_16048849_DEL [dm6]	TAATATTCATTTAAGATA...	T	2.273e^-4	0.7	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21084155	2L_21084155_SNP [dm3] 2L_21084155_SNP [dm6]	T	C	2.274e^-4	0.7	NON_SYNONYMOUS_CODING CG33510 DOWNSTREAM CG33509
2L	1888552	2L_1888552_SNP [dm3] 2L_1888552_SNP [dm6]	G	T	2.283e^-4	0.7	INTRON CG7337
2L	16650323	2L_16650323_SNP [dm3] 2L_16650323_SNP [dm6]	G	C	2.286e^-4	0.7	INTRON CG42389
3L	8415639	3L_8415639_DEL [dm3] 3L_8422539_DEL [dm6]	GTAAAGAGAG	G	2.286e^-4	0.7	UPSTREAM CG32354 INTERGENIC
3L	2955453	3L_2955453_SNP [dm3] 3L_2955453_SNP [dm6]	A	G	2.287e^-4	0.7	NON_SYNONYMOUS_CODING Shab	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17280430	3L_17280430_SNP [dm3] 3L_17287330_SNP [dm6]	A	G	2.288e^-4	0.7	INTERGENIC
2L	20052533	2L_20052533_SNP [dm3] 2L_20052533_SNP [dm6]	G	A	2.298e^-4	0.7	INTRON sNPF
2L	3091176	2L_3091176_SNP [dm3] 2L_3091176_SNP [dm6]	C	T	2.299e^-4	0.7	UPSTREAM toc INTRON toc
3L	15479481	3L_15479481_SNP [dm3] 3L_15486381_SNP [dm6]	G	A	2.301e^-4	0.7	UPSTREAM Ran-like INTERGENIC
3R	14270293	3R_14270293_SNP [dm3] 3R_18444571_SNP [dm6]	T	G	2.304e^-4	0.7	INTRON fru
3R	25791628	3R_25791628_SNP [dm3] 3R_29965906_SNP [dm6]	T	A	2.308e^-4	0.7	INTRON TkR99D
3R	8357187	3R_8357187_INS [dm3] 3R_12531465_INS [dm6]	A	AAATCCTTACAATTCTCTTC...	2.308e^-4	0.7	INTRON Octbeta3R
2R	13201606	2R_13201606_SNP [dm3] 2R_17314101_SNP [dm6]	C	G	2.314e^-4	0.7	INTRON mbl
3L	1993272	3L_1993272_SNP [dm3] 3L_1993272_SNP [dm6]	C	T	2.315e^-4	0.7	INTERGENIC
3R	25850661	3R_25850661_DEL [dm3] 3R_30024939_DEL [dm6]	TTTT	T	2.326e^-4	0.7	INTRON Axn
2L	3190712	2L_3190712_SNP [dm3] 2L_3190712_SNP [dm6]	T	A	2.330e^-4	0.7	NON_SYNONYMOUS_CODING CG34393
2L	1099268	2L_1099268_SNP [dm3] 2L_1099268_SNP [dm6]	T	G	2.333e^-4	0.7	INTRON CG4629
3L	849931	3L_849931_SNP [dm3] 3L_849931_SNP [dm6]	G	A	2.335e^-4	0.7	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6669309	2R_6669309_SNP [dm3] 2R_10781804_SNP [dm6]	C	G	2.339e^-4	0.7	INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10984721	3L_10984721_SNP [dm3] 3L_10991621_SNP [dm6]	C	A	2.339e^-4	0.7	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3048501	2L_3048501_SNP [dm3] 2L_3048501_SNP [dm6]	T	A	2.340e^-4	0.7	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	11813136	X_11813136_SNP [dm3] X_11919103_SNP [dm6]	G	C	2.343e^-4	0.7	UPSTREAM CR32661 DOWNSTREAM CR43157 & 2 others INTERGENIC
3L	1389799	3L_1389799_SNP [dm3] 3L_1389799_SNP [dm6]	T	C	2.344e^-4	0.7	INTRON Ptp61F
3L	4495157	3L_4495157_INS [dm3] 3L_4495157_INS [dm6]	G	GCTGCTGCTG	2.344e^-4	0.7	UPSTREAM CR44709 INTERGENIC
2L	2741143	2L_2741143_SNP [dm3] 2L_2741143_SNP [dm6]	T	G	2.345e^-4	0.7	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4314082	3L_4314082_SNP [dm3] 3L_4314082_SNP [dm6]	G	A	2.346e^-4	0.7	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12759678	X_12759678_DEL [dm3] X_12865645_DEL [dm6]	TTTGTTGATAT...	T	2.352e^-4	0.7	INTRON Pde9
3R	20663237	3R_20663237_SNP [dm3] 3R_24837515_SNP [dm6]	T	C	2.353e^-4	0.7	INTRON sosie
X	7689226	X_7689226_SNP [dm3] X_7795193_SNP [dm6]	G	A	2.355e^-4	0.7	INTERGENIC
2L	709884	2L_709884_SNP [dm3] 2L_709884_SNP [dm6]	G	A	2.366e^-4	0.7	UPSTREAM CR44988 INTRON ds
3L	2992609	3L_2992609_SNP [dm3] 3L_2992609_SNP [dm6]	G	T	2.369e^-4	0.7	INTERGENIC
X	16599755	X_16599755_SNP [dm3] X_16705722_SNP [dm6]	A	G	2.383e^-4	0.7	DOWNSTREAM CG9672 & 1 other INTRON CG4678
3L	13068922	3L_13068922_SNP [dm3] 3L_13075822_SNP [dm6]	A	G	2.388e^-4	0.7	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
X	22012539	X_22012539_SNP [dm3] X_22610703_SNP [dm6]	T	A	2.390e^-4	0.7	INTRON Cda4
3L	11318197	3L_11318197_SNP [dm3] 3L_11325097_SNP [dm6]	A	G	2.391e^-4	0.7	UPSTREAM CR44723 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	6363951	3L_6363951_SNP [dm3] 3L_6370851_SNP [dm6]	C	T	2.393e^-4	0.7	UPSTREAM CR45419 INTERGENIC
X	16599853	X_16599853_SNP [dm3] X_16705820_SNP [dm6]	A	T	2.396e^-4	0.7	DOWNSTREAM CG9672 & 1 other INTRON CG4678
X	9652241	X_9652241_DEL [dm3] X_9758208_DEL [dm6]	TA	T	2.420e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	25791627	3R_25791627_SNP [dm3] 3R_29965905_SNP [dm6]	G	A	2.425e^-4	0.7	INTRON TkR99D
3R	17712760	3R_17712760_SNP [dm3] 3R_21887038_SNP [dm6]	A	T	2.427e^-4	0.7	UTR_5_PRIME CG6678 INTRON dnd
2L	3097350	2L_3097350_DEL [dm3] 2L_3097350_DEL [dm6]	TT	C	2.427e^-4	0.7	INTRON toc
X	18383309	X_18383309_SNP [dm3] X_18489276_SNP [dm6]	A	G	2.429e^-4	0.7	INTRON CG15046	TF binding site mE1_TFBS_chinmo
2R	7996098	2R_7996098_DEL [dm3] 2R_12108593_DEL [dm6]	AATTGAGA	A	2.431e^-4	0.7	INTRON jeb	TF binding site BDTNP1_TFBS_sna
2L	3177972	2L_3177972_SNP [dm3] 2L_3177972_SNP [dm6]	T	C	2.440e^-4	0.7	INTRON CG34393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20838053	3L_20838053_SNP [dm3] 3L_20844953_SNP [dm6]	C	T	2.446e^-4	0.7	DOWNSTREAM CG11456 INTRON CG32432	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12400356	X_12400356_SNP [dm3] X_12506323_SNP [dm6]	G	C	2.447e^-4	0.7	INTRON CG2556
3R	14738256	3R_14738256_SNP [dm3] 3R_18912534_SNP [dm6]	C	T	2.450e^-4	0.7	NON_SYNONYMOUS_CODING CG14291	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2148209	3R_2148209_SNP [dm3] 3R_6322487_SNP [dm6]	G	A	2.454e^-4	0.7	INTRON Osi17
3L	13150057	3L_13150057_SNP [dm3] 3L_13156957_SNP [dm6]	C	T	2.455e^-4	0.7	INTERGENIC
2L	5627406	2L_5627406_SNP [dm3] 2L_5627406_SNP [dm6]	G	A	2.456e^-4	0.7	INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14371228	2R_14371228_DEL [dm3] 2R_18483723_DEL [dm6]	GTTAGG	G	2.456e^-4	0.7	INTRON CG30116
3L	6702221	3L_6702221_SNP [dm3] 3L_6709121_SNP [dm6]	A	G	2.460e^-4	0.7	DOWNSTREAM CG8519 INTERGENIC
2L	10299223	2L_10299223_SNP [dm3] 2L_10299223_SNP [dm6]	A	G	2.462e^-4	0.7	SPLICE_SITE_REGION CYLD UPSTREAM CYLD DOWNSTREAM CR44968 & 1 other INTRON CYLD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7407537	2L_7407537_SNP [dm3] 2L_7407537_SNP [dm6]	T	C	2.466e^-4	0.7	DOWNSTREAM CG5181 INTRON CG5177
3R	6293600	3R_6293600_SNP [dm3] 3R_10467878_SNP [dm6]	G	A	2.466e^-4	0.7	INTERGENIC
3R	25965160	3R_25965160_SNP [dm3] 3R_30139438_SNP [dm6]	G	A	2.473e^-4	0.7	INTRON AdoR
2L	16806507	2L_16806507_INS [dm3] 2L_16806507_INS [dm6]	G	GG	2.480e^-4	0.7	UPSTREAM CG13272 INTRON CG13280 & 1 other
3L	19769891	3L_19769891_SNP [dm3] 3L_19776791_SNP [dm6]	G	T	2.481e^-4	0.7	INTRON CG42637 & 1 other
3L	3862652	3L_3862652_SNP [dm3] 3L_3862652_SNP [dm6]	T	A	2.485e^-4	0.7	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
3L	4314053	3L_4314053_DEL [dm3] 3L_4314053_DEL [dm6]	AGAG	A	2.486e^-4	0.7		TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6669306	2R_6669306_INS [dm3] 2R_10781801_INS [dm6]	G	GA	2.489e^-4	0.7	INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11596937	3R_11596937_SNP [dm3] 3R_15771215_SNP [dm6]	C	A	2.490e^-4	0.7	INTERGENIC	transposable element FlyBase
X	8568791	X_8568791_SNP [dm3] X_8674758_SNP [dm6]	C	T	2.494e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16621147	2L_16621147_SNP [dm3] 2L_16621147_SNP [dm6]	G	A	2.495e^-4	0.7	INTRON CG42389
X	14231721	X_14231721_SNP [dm3] X_14337688_SNP [dm6]	G	C	2.499e^-4	0.7	INTRON dpr8
X	14231729	X_14231729_SNP [dm3] X_14337696_SNP [dm6]	G	A	2.499e^-4	0.7	INTRON dpr8
X	12172132	X_12172132_DEL [dm3] X_12278099_DEL [dm6]	CC	C	2.506e^-4	0.7	INTRON Ten-a
3L	4495301	3L_4495301_SNP [dm3] 3L_4495301_SNP [dm6]	G	A	2.511e^-4	0.7	UPSTREAM CR44709 INTERGENIC
2R	8995420	2R_8995420_DEL [dm3] 2R_13107915_DEL [dm6]	ACACATTAATATTCTT...	A	2.525e^-4	0.7	INTERGENIC
X	11812857	X_11812857_SNP [dm3] X_11918824_SNP [dm6]	T	A	2.529e^-4	0.7	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
2L	914531	2L_914531_DEL [dm3] 2L_914531_DEL [dm6]	TCG	AT	2.530e^-4	0.7	INTRON GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	16815862	X_16815862_SNP [dm3] X_16921829_SNP [dm6]	A	T	2.530e^-4	0.7	INTRON CG4928
2R	18651079	2R_18651079_SNP [dm3] 2R_22763574_SNP [dm6]	C	A	2.533e^-4	0.7	UPSTREAM CG13527 INTRON CG42260
3R	10204867	3R_10204867_SNP [dm3] 3R_14379145_SNP [dm6]	G	C	2.539e^-4	0.7	INTERGENIC
3R	19139472	3R_19139472_SNP [dm3] 3R_23313750_SNP [dm6]	G	T	2.547e^-4	0.7	SYNONYMOUS_CODING pnt INTRON pnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8672139	X_8672139_SNP [dm3] X_8778106_SNP [dm6]	C	T	2.548e^-4	0.7	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	10387256	3L_10387256_SNP [dm3] 3L_10394156_SNP [dm6]	T	A	2.548e^-4	0.7	INTERGENIC
2R	12901410	2R_12901410_SNP [dm3] 2R_17013905_SNP [dm6]	A	G	2.553e^-4	0.7	SYNONYMOUS_CODING Ehbp1
X	2270689	X_2270689_SNP [dm3] X_2376656_SNP [dm6]	A	G	2.556e^-4	0.7	UTR_3_PRIME PsGEF INTRON PsGEF
2R	17116129	2R_17116129_SNP [dm3] 2R_21228624_SNP [dm6]	T	G	2.560e^-4	0.7	INTRON ASPP
2R	6669750	2R_6669750_SNP [dm3] 2R_10782245_SNP [dm6]	T	A	2.563e^-4	0.7	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16578940	3R_16578940_SNP [dm3] 3R_20753218_SNP [dm6]	C	T	2.564e^-4	0.7	INTRON CG42322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7780331	X_7780331_SNP [dm3] X_7886298_SNP [dm6]	G	T	2.565e^-4	0.7	DOWNSTREAM CG10932 INTRON Ir7g
3L	1003039	3L_1003039_SNP [dm3] 3L_1003039_SNP [dm6]	G	A	2.572e^-4	0.7	INTRON trio
3L	10932654	3L_10932654_SNP [dm3] 3L_10939554_SNP [dm6]	A	T	2.572e^-4	0.7	INTERGENIC
3R	27209536	3R_27209536_DEL [dm3] 3R_31383814_DEL [dm6]	CCAGTT	C	2.574e^-4	0.7	UPSTREAM CG1607 INTRON CG1607
2R	16720107	2R_16720107_SNP [dm3] 2R_20832602_SNP [dm6]	A	T	2.577e^-4	0.7	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	11299669	X_11299669_SNP [dm3] X_11405636_SNP [dm6]	A	G	2.585e^-4	0.7	SYNONYMOUS_CODING dlg1	TF binding site mE1_TFBS_HSA
3R	25638474	3R_25638474_SNP [dm3] 3R_29812752_SNP [dm6]	A	C	2.589e^-4	0.7	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_chinmo
3R	23115952	3R_23115952_SNP [dm3] 3R_27290230_SNP [dm6]	A	G	2.590e^-4	0.7	SYNONYMOUS_CODING Hmu	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4710415	3L_4710415_SNP [dm3] 3L_4710415_SNP [dm6]	C	T	2.592e^-4	0.7	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3389732	3L_3389732_SNP [dm3] 3L_3389732_SNP [dm6]	C	T	2.594e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6485641	X_6485641_SNP [dm3] X_6591608_SNP [dm6]	T	C	2.596e^-4	0.7	SYNONYMOUS_CODING Pat1 DOWNSTREAM CG17717 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9413057	2L_9413057_SNP [dm3] 2L_9413057_SNP [dm6]	G	A	2.599e^-4	0.7	INTRON Shawl
3L	16042026	3L_16042026_SNP [dm3] 3L_16048926_SNP [dm6]	T	A	2.599e^-4	0.7	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13548742	2R_13548742_SNP [dm3] 2R_17661237_SNP [dm6]	A	G	2.602e^-4	0.7	INTRON CCHa1-R
2L	3094166	2L_3094166_INS [dm3] 2L_3094166_INS [dm6]	G	GATTCGATTT	2.603e^-4	0.7	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	25806552	3R_25806552_SNP [dm3] 3R_29980830_SNP [dm6]	T	C	2.604e^-4	0.7	INTERGENIC
2L	1752494	2L_1752494_SNP [dm3] 2L_1752494_SNP [dm6]	T	G	2.612e^-4	0.7	NON_SYNONYMOUS_CODING CG17648 UPSTREAM CG17712	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	4721986	3L_4721986_SNP [dm3] 3L_4721986_SNP [dm6]	A	G	2.612e^-4	0.7	INTRON RhoGEF64C
X	8702275	X_8702275_SNP [dm3] X_8808242_SNP [dm6]	C	G	2.620e^-4	0.7	INTERGENIC
2R	17261915	2R_17261915_SNP [dm3] 2R_21374410_SNP [dm6]	C	G	2.623e^-4	0.7	INTRON cv-2
2L	13496571	2L_13496571_DEL [dm3] 2L_13496571_DEL [dm6]	CGGCCGATC	C	2.625e^-4	0.7	FRAME_SHIFT CG42784 INTRON CG42784
3L	4217467	3L_4217467_SNP [dm3] 3L_4217467_SNP [dm6]	T	C	2.625e^-4	0.7	SPLICE_SITE_REGION CG43367 INTRON CG43367
3L	12035310	3L_12035310_SNP [dm3] 3L_12042210_SNP [dm6]	A	G	2.626e^-4	0.7	UPSTREAM CG6793 INTRON rols
2L	7237596	2L_7237596_SNP [dm3] 2L_7237596_SNP [dm6]	C	T	2.627e^-4	0.7	INTRON Ndae1
2L	11701819	2L_11701819_INS [dm3] 2L_11701819_INS [dm6]	C	CTAC	2.628e^-4	0.7	INTERGENIC
2L	6288938	2L_6288938_SNP [dm3] 2L_6288938_SNP [dm6]	T	G	2.630e^-4	0.7	INTRON Ddr
X	12437851	X_12437851_SNP [dm3] X_12543818_SNP [dm6]	C	A	2.630e^-4	0.7	INTRON CG43921
2L	7951437	2L_7951437_INS [dm3] 2L_7951437_INS [dm6]	T	TAGA	2.640e^-4	0.7	INTRON Snoo
2R	17683213	2R_17683213_INS [dm3] 2R_21795708_INS [dm6]	T	TT	2.649e^-4	0.7	UPSTREAM CG34204 INTERGENIC
2L	10147417	2L_10147417_SNP [dm3] 2L_10147417_SNP [dm6]	A	C	2.654e^-4	0.7	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
X	8851444	X_8851444_SNP [dm3] X_8957411_SNP [dm6]	A	T	2.661e^-4	0.7	INTRON rdgA
3R	25858639	3R_25858639_SNP [dm3] 3R_30032917_SNP [dm6]	A	T	2.666e^-4	0.7	INTRON Axn	TF binding site mE1_TFBS_cad
3L	14004009	3L_14004009_SNP [dm3] 3L_14010909_SNP [dm6]	T	G	2.667e^-4	0.7	INTRON upSET	TF binding site mE1_TFBS_cad
3R	17234276	3R_17234276_SNP [dm3] 3R_21408554_SNP [dm6]	C	A	2.672e^-4	0.7	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8687441	3L_8687441_SNP [dm3] 3L_8694341_SNP [dm6]	A	G	2.673e^-4	0.7	INTERGENIC
3L	14663700	3L_14663700_SNP [dm3] 3L_14670600_SNP [dm6]	C	A	2.683e^-4	0.7	SYNONYMOUS_CODING dlp
3R	8626742	3R_8626742_SNP [dm3] 3R_12801020_SNP [dm6]	A	G	2.684e^-4	0.7	INTERGENIC
X	10297877	X_10297877_DEL [dm3] X_10403844_DEL [dm6]	AA	A	2.686e^-4	0.7	INTRON flw	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10387253	3L_10387253_SNP [dm3] 3L_10394153_SNP [dm6]	A	T	2.687e^-4	0.7	INTERGENIC
2L	6408987	2L_6408987_SNP [dm3] 2L_6408987_SNP [dm6]	T	G	2.695e^-4	0.7	INTRON CG42368	TF binding site mE1_TFBS_inv
2L	16653000	2L_16653000_SNP [dm3] 2L_16653000_SNP [dm6]	A	C	2.705e^-4	0.7	INTRON CG42389
2L	9503690	2L_9503690_SNP [dm3] 2L_9503690_SNP [dm6]	A	G	2.706e^-4	0.7	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10306468	2L_10306468_SNP [dm3] 2L_10306468_SNP [dm6]	C	T	2.707e^-4	0.7	UPSTREAM CG4968 INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_zfh1
3L	7834395	3L_7834395_SNP [dm3] 3L_7841295_SNP [dm6]	G	T	2.710e^-4	0.7	INTRON Pdp1	regulatory region REDfly_CRMs
2L	3940765	2L_3940765_SNP [dm3] 2L_3940765_SNP [dm6]	C	T	2.712e^-4	0.7	INTRON fred
X	11554921	X_11554921_SNP [dm3] X_11660888_SNP [dm6]	T	C	2.712e^-4	0.7	INTRON Ptp10D
3R	19586632	3R_19586632_SNP [dm3] 3R_23760910_SNP [dm6]	G	C	2.713e^-4	0.7	UTR_3_PRIME CG10217 UPSTREAM CG10219	TF binding site BDTNP1_TFBS_dl
3L	14584450	3L_14584450_SNP [dm3] 3L_14591350_SNP [dm6]	G	C	2.715e^-4	0.7	INTRON HGTX
3R	14756503	3R_14756503_INS [dm3] 3R_18930781_INS [dm6]	A	AT	2.716e^-4	0.7	INTRON CG42613
3R	25854162	3R_25854162_SNP [dm3] 3R_30028440_SNP [dm6]	T	C	2.718e^-4	0.7	INTRON Axn
2L	15947036	2L_15947036_SNP [dm3] 2L_15947036_SNP [dm6]	C	A	2.725e^-4	0.7	INTRON beat-Ib
3L	4313209	3L_4313209_INS [dm3] 3L_4313209_INS [dm6]	T	TTTCCATTCAG...	2.733e^-4	0.7	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9943778	3R_9943778_SNP [dm3] 3R_14118056_SNP [dm6]	T	A	2.736e^-4	0.7	INTRON Kif19A
2L	10350032	2L_10350032_SNP [dm3] 2L_10350032_SNP [dm6]	A	T	2.741e^-4	0.7	INTRON CG34367
2L	15261602	2L_15261602_SNP [dm3] 2L_15261602_SNP [dm6]	C	G	2.742e^-4	0.7	NON_SYNONYMOUS_CODING yuri INTRON yuri
3L	14080608	3L_14080608_DEL [dm3] 3L_14087508_DEL [dm6]	TAT	T	2.744e^-4	0.7	INTERGENIC
2R	16286308	2R_16286308_SNP [dm3] 2R_20398803_SNP [dm6]	A	G	2.745e^-4	0.7	INTERGENIC
X	9786462	X_9786462_SNP [dm3] X_9892429_SNP [dm6]	T	C	2.750e^-4	0.7	INTRON CG15249
2L	7408653	2L_7408653_SNP [dm3] 2L_7408653_SNP [dm6]	C	T	2.752e^-4	0.7	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
2L	7408670	2L_7408670_SNP [dm3] 2L_7408670_SNP [dm6]	T	C	2.765e^-4	0.7	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3L	22419941	3L_22419941_SNP [dm3] 3L_22426841_SNP [dm6]	C	T	2.768e^-4	0.7	INTERGENIC
2L	8500033	2L_8500033_SNP [dm3] 2L_8500033_SNP [dm6]	A	T	2.768e^-4	0.7	INTRON Dh31
3R	13770293	3R_13770293_INS [dm3] 3R_17944571_INS [dm6]	C	CAACGAGC	2.771e^-4	0.7	INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10049170	2L_10049170_SNP [dm3] 2L_10049170_SNP [dm6]	G	A	2.771e^-4	0.7	UPSTREAM CG33301 INTERGENIC
3L	22420947	3L_22420947_SNP [dm3] 3L_22427847_SNP [dm6]	A	G	2.773e^-4	0.7	INTERGENIC
2L	6890320	2L_6890320_SNP [dm3] 2L_6890320_SNP [dm6]	T	C	2.780e^-4	0.7	INTRON Nlg2
3L	3411837	3L_3411837_SNP [dm3] 3L_3411837_SNP [dm6]	A	C	2.781e^-4	0.7	DOWNSTREAM mir-2282 INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	5844208	3L_5844208_SNP [dm3] 3L_5851108_SNP [dm6]	C	T	2.784e^-4	0.7	INTERGENIC
3L	7121781	3L_7121781_SNP [dm3] 3L_7128681_SNP [dm6]	T	C	2.784e^-4	0.7	UPSTREAM CG15829 & 1 other DOWNSTREAM BBS1 INTERGENIC
3L	8038191	3L_8038191_SNP [dm3] 3L_8045091_SNP [dm6]	C	A	2.784e^-4	0.7	INTRON nmo
2L	15947057	2L_15947057_INS [dm3] 2L_15947057_INS [dm6]	G	GGTGTTCAG	2.787e^-4	0.7	INTRON beat-Ib
3L	11344836	3L_11344836_SNP [dm3] 3L_11351736_SNP [dm6]	A	G	2.789e^-4	0.7	INTERGENIC
3R	25955145	3R_25955145_SNP [dm3] 3R_30129423_SNP [dm6]	G	A	2.793e^-4	0.7	SYNONYMOUS_CODING CG31029 UPSTREAM Ppi1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14642424	2L_14642424_SNP [dm3] 2L_14642424_SNP [dm6]	G	A	2.793e^-4	0.7	INTRON osp
3L	1001786	3L_1001786_SNP [dm3] 3L_1001786_SNP [dm6]	C	G	2.800e^-4	0.7	INTRON trio
X	11674104	X_11674104_SNP [dm3] X_11780071_SNP [dm6]	A	G	2.800e^-4	0.7	INTERGENIC
3L	1003169	3L_1003169_INS [dm3] 3L_1003169_INS [dm6]	T	TAGTAAC	2.803e^-4	0.7	INTRON trio
3L	1003171	3L_1003171_DEL [dm3] 3L_1003171_DEL [dm6]	AT	A	2.803e^-4	0.7	INTRON trio
2R	17115338	2R_17115338_SNP [dm3] 2R_21227833_SNP [dm6]	A	T	2.807e^-4	0.7	INTRON ASPP
X	16815786	X_16815786_SNP [dm3] X_16921753_SNP [dm6]	T	G	2.808e^-4	0.7	INTRON CG4928
3L	11536693	3L_11536693_SNP [dm3] 3L_11543593_SNP [dm6]	T	C	2.809e^-4	0.7	INTRON Mob2
2R	19461433	2R_19461433_SNP [dm3] 2R_23573910_SNP [dm6]	A	G	2.811e^-4	0.7	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17261390	2R_17261390_SNP [dm3] 2R_21373885_SNP [dm6]	C	T	2.813e^-4	0.7	INTRON cv-2
X	11822640	X_11822640_SNP [dm3] X_11928607_SNP [dm6]	A	G	2.817e^-4	0.7	SYNONYMOUS_CODING CG10362
3L	9008137	3L_9008137_SNP [dm3] 3L_9015037_SNP [dm6]	T	A	2.822e^-4	0.7	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15049044	2L_15049044_SNP [dm3] 2L_15049044_SNP [dm6]	G	A	2.829e^-4	0.7	INTRON ck	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	5356100	2R_5356100_SNP [dm3] 2R_9468595_SNP [dm6]	C	T	2.838e^-4	0.7	INTRON Camta
2L	722404	2L_722404_SNP [dm3] 2L_722404_SNP [dm6]	A	G	2.845e^-4	0.7	INTERGENIC
X	18806907	X_18806907_SNP [dm3] X_18912874_SNP [dm6]	G	A	2.846e^-4	0.7	DOWNSTREAM CR44708 INTERGENIC
2L	19817064	2L_19817064_SNP [dm3] 2L_19817064_SNP [dm6]	A	T	2.855e^-4	0.7	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	2887237	3L_2887237_SNP [dm3] 3L_2887237_SNP [dm6]	C	T	2.855e^-4	0.7	INTRON spz5
X	12373498	X_12373498_SNP [dm3] X_12479465_SNP [dm6]	C	T	2.856e^-4	0.7	INTERGENIC
2L	10123100	2L_10123100_SNP [dm3] 2L_10123100_SNP [dm6]	A	G	2.857e^-4	0.7	UPSTREAM CG13135 INTRON CG44153 & 1 other
3R	21575346	3R_21575346_SNP [dm3] 3R_25749624_SNP [dm6]	T	A	2.857e^-4	0.7	INTRON LpR1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18160205	3R_18160205_SNP [dm3] 3R_22334483_SNP [dm6]	A	G	2.862e^-4	0.7	UTR_3_PRIME CG5388 UPSTREAM CG5391
3R	22512513	3R_22512513_SNP [dm3] 3R_26686791_SNP [dm6]	C	A	2.863e^-4	0.7	INTERGENIC
3L	1939983	3L_1939983_INS [dm3] 3L_1939983_INS [dm6]	G	GGAAGGGGATCCTAAGCACT...	2.864e^-4	0.7	UPSTREAM CG5687 EXON CR44536
2L	626555	2L_626555_SNP [dm3] 2L_626555_SNP [dm6]	A	G	2.864e^-4	0.7	NON_SYNONYMOUS_CODING CG2839 DOWNSTREAM lectin-21Ca	TF binding site BDTNP1_TFBS_dl
3L	19437975	3L_19437975_INS [dm3] 3L_19444875_INS [dm6]	A	AA	2.875e^-4	0.701	INTRON CG33062
3L	13962394	3L_13962394_SNP [dm3] 3L_13969294_SNP [dm6]	A	G	2.884e^-4	0.702	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
X	14462283	X_14462283_SNP [dm3] X_14568250_SNP [dm6]	A	C	2.885e^-4	0.702	INTERGENIC
2L	3431013	2L_3431013_SNP [dm3] 2L_3431013_SNP [dm6]	A	T	2.895e^-4	0.703	INTERGENIC
3L	8658756	3L_8658756_SNP [dm3] 3L_8665656_SNP [dm6]	A	C	2.896e^-4	0.703	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	12524478	3L_12524478_SNP [dm3] 3L_12531378_SNP [dm6]	G	A	2.904e^-4	0.703	SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
3L	12992186	3L_12992186_SNP [dm3] 3L_12999086_SNP [dm6]	G	T	2.904e^-4	0.703	INTERGENIC
3R	12369541	3R_12369541_SNP [dm3] 3R_16543819_SNP [dm6]	A	C	2.917e^-4	0.705	INTRON CG42342
2L	6406488	2L_6406488_SNP [dm3] 2L_6406488_SNP [dm6]	T	G	2.926e^-4	0.706	INTRON CG42368	TF binding site mE1_TFBS_HSA
3L	10800507	3L_10800507_SNP [dm3] 3L_10807407_SNP [dm6]	T	G	2.929e^-4	0.706	INTERGENIC
3R	7145030	3R_7145030_SNP [dm3] 3R_11319308_SNP [dm6]	A	T	2.931e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21499140	3R_21499140_SNP [dm3] 3R_25673418_SNP [dm6]	T	C	2.954e^-4	0.707	INTRON Lgr3
3L	10932664	3L_10932664_SNP [dm3] 3L_10939564_SNP [dm6]	C	T	2.956e^-4	0.707	INTERGENIC
3L	7586286	3L_7586286_SNP [dm3] 3L_7593186_SNP [dm6]	G	T	2.961e^-4	0.707	START_GAINED CG33275 UTR_5_PRIME CG33275
X	15575387	X_15575387_SNP [dm3] X_15681354_SNP [dm6]	A	C	2.966e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9010325	3L_9010325_SNP [dm3] 3L_9017225_SNP [dm6]	G	T	2.967e^-4	0.707	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25850656	3R_25850656_SNP [dm3] 3R_30024934_SNP [dm6]	A	T	2.971e^-4	0.707	INTRON Axn
2R	16972312	2R_16972312_SNP [dm3] 2R_21084807_SNP [dm6]	A	G	2.973e^-4	0.707	INTRON Treh	TF binding site mE1_TFBS_cad
3R	25783348	3R_25783348_DEL [dm3] 3R_29957626_DEL [dm6]	CCTAAGTAAAAGCC...	C	2.980e^-4	0.707	INTRON TkR99D
2R	16193335	2R_16193335_SNP [dm3] 2R_20305830_SNP [dm6]	A	G	2.989e^-4	0.707	INTRON CG11200
3L	20046178	3L_20046178_SNP [dm3] 3L_20053078_SNP [dm6]	C	T	2.990e^-4	0.707	INTERGENIC
X	8169165	X_8169165_SNP [dm3] X_8275132_SNP [dm6]	A	G	2.994e^-4	0.707	SYNONYMOUS_CODING CG1636	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16347259	2R_16347259_SNP [dm3] 2R_20459754_SNP [dm6]	G	A	2.999e^-4	0.707	INTRON CG12484
3R	16641042	3R_16641042_SNP [dm3] 3R_20815320_SNP [dm6]	C	T	3.000e^-4	0.707	SYNONYMOUS_CODING Fancd2	TF binding site mE1_TFBS_sens
3L	18005797	3L_18005797_DEL [dm3] 3L_18012697_DEL [dm6]	TTTTCTATT	T	3.001e^-4	0.707	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25141225	3R_25141225_SNP [dm3] 3R_29315503_SNP [dm6]	A	G	3.003e^-4	0.707	UTR_3_PRIME Cnx99A DOWNSTREAM Cnx99A
2L	19825562	2L_19825562_SNP [dm3] 2L_19825562_SNP [dm6]	A	C	3.005e^-4	0.707	UPSTREAM sick INTRON sick
3L	11532546	3L_11532546_DEL [dm3] 3L_11539446_DEL [dm6]	TGTATGT	T	3.005e^-4	0.707	INTRON Mob2
3L	18737352	3L_18737352_SNP [dm3] 3L_18744252_SNP [dm6]	G	C	3.010e^-4	0.707	UPSTREAM CG6885 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	5571029	2R_5571029_SNP [dm3] 2R_9683524_SNP [dm6]	G	A	3.011e^-4	0.707	UTR_5_PRIME Mmp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20605123	X_20605123_SNP [dm3] X_20734096_SNP [dm6]	C	A	3.011e^-4	0.707	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	819186	3L_819186_DEL [dm3] 3L_819186_DEL [dm6]	ACATATTG	A	3.029e^-4	0.709	INTERGENIC
2L	10164769	2L_10164769_SNP [dm3] 2L_10164769_SNP [dm6]	C	G	3.034e^-4	0.709	INTRON CG44153
3L	712622	3L_712622_SNP [dm3] 3L_712622_SNP [dm6]	G	A	3.038e^-4	0.709	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	678653	2R_678653_DEL [dm3] 2R_4791148_DEL [dm6]	CC	C	3.048e^-4	0.709	INTERGENIC	transposable element FlyBase
3R	9155976	3R_9155976_SNP [dm3] 3R_13330254_SNP [dm6]	A	G	3.049e^-4	0.709	SYNONYMOUS_CODING PK2-R2
2L	5432072	2L_5432072_DEL [dm3] 2L_5432072_DEL [dm6]	GAG	G	3.051e^-4	0.709	UPSTREAM CR43714 EXON CR43713
X	12764186	X_12764186_SNP [dm3] X_12870153_SNP [dm6]	T	G	3.052e^-4	0.709	INTRON Pde9
2R	5625478	2R_5625478_SNP [dm3] 2R_9737973_SNP [dm6]	G	A	3.054e^-4	0.709	INTRON sqa
2L	7994836	2L_7994836_SNP [dm3] 2L_7994836_SNP [dm6]	T	A	3.056e^-4	0.709	UTR_3_PRIME CG7227 UPSTREAM pes DOWNSTREAM CG7227 EXON CR44996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	25839171	3R_25839171_SNP [dm3] 3R_30013449_SNP [dm6]	C	G	3.058e^-4	0.709	INTRON CG7920
3L	621241	3L_621241_INS [dm3] 3L_621241_INS [dm6]	T	TACACATGCAT...	3.065e^-4	0.709	UTR_3_PRIME CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	14734215	3R_14734215_SNP [dm3] 3R_18908493_SNP [dm6]	G	T	3.070e^-4	0.709	UTR_3_PRIME EndoA INTRON EndoA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12764624	X_12764624_SNP [dm3] X_12870591_SNP [dm6]	T	A	3.071e^-4	0.709	INTRON Pde9
2L	6408877	2L_6408877_SNP [dm3] 2L_6408877_SNP [dm6]	T	G	3.079e^-4	0.71	INTRON CG42368	TF binding site mE1_TFBS_inv
2R	16191275	2R_16191275_SNP [dm3] 2R_20303770_SNP [dm6]	C	T	3.090e^-4	0.712	DOWNSTREAM CR44640 & 2 others INTERGENIC
3L	3777558	3L_3777558_SNP [dm3] 3L_3777558_SNP [dm6]	G	A	3.096e^-4	0.712	INTRON CG32264
2L	15819569	2L_15819569_SNP [dm3] 2L_15819569_SNP [dm6]	C	A	3.106e^-4	0.714	INTERGENIC
2L	7408090	2L_7408090_SNP [dm3] 2L_7408090_SNP [dm6]	C	T	3.116e^-4	0.714	DOWNSTREAM CG5181 INTRON CG5177
3L	6702651	3L_6702651_SNP [dm3] 3L_6709551_SNP [dm6]	T	C	3.117e^-4	0.714	DOWNSTREAM CG8519 INTERGENIC
3L	707089	3L_707089_SNP [dm3] 3L_707089_SNP [dm6]	A	G	3.117e^-4	0.714	SYNONYMOUS_CODING CG13895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	10387247	3L_10387247_INS [dm3] 3L_10394147_INS [dm6]	G	GCAGAAAT	3.120e^-4	0.714	INTERGENIC
2R	17749622	2R_17749622_SNP [dm3] 2R_21862117_SNP [dm6]	T	G	3.131e^-4	0.715	DOWNSTREAM CG9294 INTERGENIC
3L	2827426	3L_2827426_SNP [dm3] 3L_2827426_SNP [dm6]	C	T	3.142e^-4	0.717	INTRON CG43444
3L	19366292	3L_19366292_SNP [dm3] 3L_19373192_SNP [dm6]	C	A	3.152e^-4	0.717	INTRON CG32206
X	2337553	X_2337553_SNP [dm3] X_2443520_SNP [dm6]	G	T	3.157e^-4	0.717	UTR_5_PRIME tko DOWNSTREAM boi INTRON tko	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13068923	3L_13068923_SNP [dm3] 3L_13075823_SNP [dm6]	A	T	3.158e^-4	0.717	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
2L	4085812	2L_4085812_SNP [dm3] 2L_4085812_SNP [dm6]	G	C	3.158e^-4	0.717	UPSTREAM snoRNA:Me28S-C437 INTRON ed
3R	9711194	3R_9711194_SNP [dm3] 3R_13885472_SNP [dm6]	T	A	3.161e^-4	0.717	INTERGENIC
X	7055295	X_7055295_SNP [dm3] X_7161262_SNP [dm6]	G	T	3.168e^-4	0.718	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
X	8694710	X_8694710_SNP [dm3] X_8800677_SNP [dm6]	T	A	3.182e^-4	0.718	INTRON Lim1	TF binding site BDTNP1_TFBS_dl
X	7055336	X_7055336_SNP [dm3] X_7161303_SNP [dm6]	T	C	3.189e^-4	0.718	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
X	8851365	X_8851365_SNP [dm3] X_8957332_SNP [dm6]	C	T	3.191e^-4	0.718	INTRON rdgA
2L	4928578	2L_4928578_SNP [dm3] 2L_4928578_SNP [dm6]	C	T	3.196e^-4	0.718	UPSTREAM hoe1 INTRON hoe1
3L	9654903	3L_9654903_SNP [dm3] 3L_9661803_SNP [dm6]	T	C	3.210e^-4	0.718	INTRON fry	TF binding site BDTNP1_TFBS_twi
3L	9357616	3L_9357616_SNP [dm3] 3L_9364516_SNP [dm6]	G	A	3.211e^-4	0.718	NON_SYNONYMOUS_CODING CG4447 INTRON Klp67A	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13067080	3L_13067080_SNP [dm3] 3L_13073980_SNP [dm6]	G	C	3.213e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10387249	3L_10387249_SNP [dm3] 3L_10394149_SNP [dm6]	T	G	3.220e^-4	0.718	INTERGENIC
X	18807060	X_18807060_SNP [dm3] X_18913027_SNP [dm6]	A	G	3.222e^-4	0.718	DOWNSTREAM CR44708 INTERGENIC
X	8702401	X_8702401_SNP [dm3] X_8808368_SNP [dm6]	A	T	3.226e^-4	0.718	INTERGENIC
2R	2594033	2R_2594033_SNP [dm3] 2R_6706528_SNP [dm6]	A	C	3.228e^-4	0.718	UPSTREAM CR43611 DOWNSTREAM mir-4975 INTRON CG3409 & 1 other
3R	9711210	3R_9711210_MNP [dm3] 3R_13885488_MNP [dm6]	AAA	CCG	3.231e^-4	0.718	INTERGENIC
3L	15068952	3L_15068952_SNP [dm3] 3L_15075852_SNP [dm6]	G	A	3.231e^-4	0.718	SPLICE_SITE_REGION cp309 INTRON cp309	TF binding site mE1_TFBS_cad
3L	818885	3L_818885_SNP [dm3] 3L_818885_SNP [dm6]	A	G	3.233e^-4	0.718	INTERGENIC
2R	7541496	2R_7541496_SNP [dm3] 2R_11653991_SNP [dm6]	C	A	3.234e^-4	0.718	UPSTREAM CG13198 INTRON Roc2
3R	20352639	3R_20352639_SNP [dm3] 3R_24526917_SNP [dm6]	T	G	3.241e^-4	0.718	INTRON CG13618
3R	9961729	3R_9961729_SNP [dm3] 3R_14136007_SNP [dm6]	G	T	3.242e^-4	0.718	INTERGENIC
3L	7831920	3L_7831920_SNP [dm3] 3L_7838820_SNP [dm6]	C	G	3.248e^-4	0.718	INTRON Pdp1	regulatory region REDfly_CRMs
2R	5886615	2R_5886615_SNP [dm3] 2R_9999110_SNP [dm6]	C	G	3.249e^-4	0.718	INTRON Pka-R2
X	7055307	X_7055307_SNP [dm3] X_7161274_SNP [dm6]	G	T	3.252e^-4	0.718	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
2R	11533126	2R_11533126_SNP [dm3] 2R_15645621_SNP [dm6]	G	T	3.254e^-4	0.718	INTRON CG42524	TF binding site BDTNP1_TFBS_hb
X	7057905	X_7057905_SNP [dm3] X_7163872_SNP [dm6]	C	G	3.254e^-4	0.718	INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	8702403	X_8702403_SNP [dm3] X_8808370_SNP [dm6]	T	A	3.258e^-4	0.718	INTERGENIC
2R	8440342	2R_8440342_DEL [dm3] 2R_12552837_DEL [dm6]	AAGA	A	3.263e^-4	0.718	INTRON fra
3R	20322047	3R_20322047_SNP [dm3] 3R_24496325_SNP [dm6]	T	G	3.264e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3539905	3L_3539905_SNP [dm3] 3L_3539905_SNP [dm6]	T	C	3.273e^-4	0.718	INTRON Eip63E
2L	3159768	2L_3159768_SNP [dm3] 2L_3159768_SNP [dm6]	A	T	3.282e^-4	0.718	UPSTREAM gkt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	18568662	3L_18568662_SNP [dm3] 3L_18575562_SNP [dm6]	T	C	3.283e^-4	0.718	UTR_3_PRIME AstC-R1	TF binding site mE1_TFBS_inv
2R	17527053	2R_17527053_SNP [dm3] 2R_21639548_SNP [dm6]	T	A	3.288e^-4	0.718	INTERGENIC
3R	25791634	3R_25791634_DEL [dm3] 3R_29965912_DEL [dm6]	TT	T	3.291e^-4	0.718	INTRON TkR99D
3L	10006561	3L_10006561_SNP [dm3] 3L_10013461_SNP [dm6]	A	G	3.298e^-4	0.718	INTRON dpr6	TF binding site mE1_TFBS_HSA
3L	12706534	3L_12706534_SNP [dm3] 3L_12713434_SNP [dm6]	A	G	3.298e^-4	0.718	INTERGENIC
3R	26686000	3R_26686000_SNP [dm3] 3R_30860278_SNP [dm6]	G	C	3.300e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12871263	3L_12871263_SNP [dm3] 3L_12878163_SNP [dm6]	G	C	3.301e^-4	0.718	INTERGENIC
3L	13149607	3L_13149607_SNP [dm3] 3L_13156507_SNP [dm6]	G	A	3.305e^-4	0.718	INTERGENIC
3L	9654899	3L_9654899_SNP [dm3] 3L_9661799_SNP [dm6]	A	T	3.307e^-4	0.718	INTRON fry	TF binding site BDTNP1_TFBS_twi
2L	14824494	2L_14824494_SNP [dm3] 2L_14824494_SNP [dm6]	A	C	3.316e^-4	0.718	INTERGENIC
3L	10387244	3L_10387244_SNP [dm3] 3L_10394144_SNP [dm6]	A	G	3.317e^-4	0.718	INTERGENIC
2L	3940891	2L_3940891_SNP [dm3] 2L_3940891_SNP [dm6]	G	A	3.320e^-4	0.718	INTRON fred
X	8851359	X_8851359_SNP [dm3] X_8957326_SNP [dm6]	G	A	3.329e^-4	0.718	INTRON rdgA
3L	3352193	3L_3352193_SNP [dm3] 3L_3352193_SNP [dm6]	A	C	3.332e^-4	0.718	INTRON kst
2L	9037927	2L_9037927_SNP [dm3] 2L_9037927_SNP [dm6]	G	C	3.332e^-4	0.718	INTERGENIC
2L	8500034	2L_8500034_SNP [dm3] 2L_8500034_SNP [dm6]	G	A	3.333e^-4	0.718	INTRON Dh31
3L	15960853	3L_15960853_SNP [dm3] 3L_15967753_SNP [dm6]	G	C	3.339e^-4	0.718	UTR_5_PRIME l_3_72Ab UPSTREAM CG10516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	14470585	3L_14470585_SNP [dm3] 3L_14477485_SNP [dm6]	C	T	3.344e^-4	0.718	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2R	682903	2R_682903_SNP [dm3] 2R_4795398_SNP [dm6]	G	A	3.367e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	23525734	3R_23525734_SNP [dm3] 3R_27700012_SNP [dm6]	C	T	3.369e^-4	0.72	UTR_5_PRIME ALiX UPSTREAM btz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16731302	2R_16731302_SNP [dm3] 2R_20843797_SNP [dm6]	T	C	3.373e^-4	0.72	INTERGENIC
3R	24361523	3R_24361523_SNP [dm3] 3R_28535801_SNP [dm6]	C	A	3.375e^-4	0.72	INTRON Ppn
3L	2300680	3L_2300680_SNP [dm3] 3L_2300680_SNP [dm6]	C	T	3.378e^-4	0.72	UTR_3_PRIME MsR2	TF binding site mE1_TFBS_cad
3L	5879572	3L_5879572_SNP [dm3] 3L_5886472_SNP [dm6]	A	T	3.380e^-4	0.72	INTERGENIC
X	2353778	X_2353778_SNP [dm3] X_2459745_SNP [dm6]	G	A	3.383e^-4	0.72	INTRON boi
2L	1712142	2L_1712142_SNP [dm3] 2L_1712142_SNP [dm6]	C	T	3.384e^-4	0.72	SPLICE_SITE_REGION frtz DOWNSTREAM mRpL48 INTRON frtz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15462908	3L_15462908_SNP [dm3] 3L_15469808_SNP [dm6]	G	C	3.403e^-4	0.723	INTERGENIC
3R	20619541	3R_20619541_SNP [dm3] 3R_24793819_SNP [dm6]	A	C	3.404e^-4	0.723	INTRON Ets96B	TF binding site mE1_TFBS_cad
X	8900489	X_8900489_SNP [dm3] X_9006456_SNP [dm6]	T	C	3.422e^-4	0.725	INTRON rdgA & 1 other
X	22363858	X_22363858_SNP [dm3] X_22962022_SNP [dm6]	G	A	3.424e^-4	0.725	SYNONYMOUS_CODING CG40485	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8857422	X_8857422_SNP [dm3] X_8963389_SNP [dm6]	T	C	3.424e^-4	0.725	INTRON rdgA
2R	15390929	2R_15390929_SNP [dm3] 2R_19503424_SNP [dm6]	C	T	3.459e^-4	0.725	SYNONYMOUS_CODING CG11007	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6591061	2R_6591061_SNP [dm3] 2R_10703556_SNP [dm6]	A	T	3.460e^-4	0.725	INTRON stan
3L	8323849	3L_8323849_SNP [dm3] 3L_8330749_SNP [dm6]	A	T	3.462e^-4	0.725	DOWNSTREAM CG34462 INTERGENIC
3R	22514603	3R_22514603_SNP [dm3] 3R_26688881_SNP [dm6]	T	C	3.462e^-4	0.725	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4500898	X_4500898_SNP [dm3] X_4606865_SNP [dm6]	T	G	3.464e^-4	0.725	INTRON CR32773	TF binding site mE1_TFBS_inv
3R	26694093	3R_26694093_SNP [dm3] 3R_30868371_SNP [dm6]	C	T	3.468e^-4	0.725	SYNONYMOUS_CODING Cpr100A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16173290	2R_16173290_SNP [dm3] 2R_20285785_SNP [dm6]	T	C	3.472e^-4	0.725	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19869975	X_19869975_SNP [dm3] X_19975942_SNP [dm6]	G	T	3.473e^-4	0.725	INTERGENIC
3R	11596924	3R_11596924_SNP [dm3] 3R_15771202_SNP [dm6]	C	G	3.475e^-4	0.725	INTERGENIC	transposable element FlyBase
3R	26297454	3R_26297454_SNP [dm3] 3R_30471732_SNP [dm6]	T	A	3.477e^-4	0.725	INTRON PH4alphaEFB
X	16815790	X_16815790_SNP [dm3] X_16921757_SNP [dm6]	A	T	3.483e^-4	0.725	INTRON CG4928
X	16717057	X_16717057_SNP [dm3] X_16823024_SNP [dm6]	G	A	3.484e^-4	0.725	INTRON CG4829
X	12428287	X_12428287_SNP [dm3] X_12534254_SNP [dm6]	A	G	3.484e^-4	0.725	INTRON CG43921
2R	17620107	2R_17620107_SNP [dm3] 2R_21732602_SNP [dm6]	A	G	3.484e^-4	0.725	INTERGENIC
2R	11619380	2R_11619380_INS [dm3] 2R_15731875_INS [dm6]	A	AT	3.485e^-4	0.725	INTRON CG30089
X	12759673	X_12759673_SNP [dm3] X_12865640_SNP [dm6]	G	A	3.490e^-4	0.725	INTRON Pde9
3L	2534607	3L_2534607_SNP [dm3] 3L_2534607_SNP [dm6]	T	A	3.500e^-4	0.725	INTRON Spn
3R	21331514	3R_21331514_SNP [dm3] 3R_25505792_SNP [dm6]	A	G	3.503e^-4	0.725	SYNONYMOUS_CODING CG5107 UPSTREAM CG5111
3L	417750	3L_417750_SNP [dm3] 3L_417750_SNP [dm6]	C	T	3.514e^-4	0.725	INTERGENIC	regulatory region REDfly_CRMs
3R	9717365	3R_9717365_SNP [dm3] 3R_13891643_SNP [dm6]	G	T	3.523e^-4	0.725	INTERGENIC
2R	14915574	2R_14915574_SNP [dm3] 2R_19028069_SNP [dm6]	T	G	3.536e^-4	0.725	INTRON 5-HT1B
3L	4494869	3L_4494869_SNP [dm3] 3L_4494869_SNP [dm6]	T	C	3.538e^-4	0.725	UPSTREAM CR44709 INTERGENIC
3L	11529852	3L_11529852_SNP [dm3] 3L_11536752_SNP [dm6]	C	G	3.538e^-4	0.725	INTRON Mob2
2R	12607727	2R_12607727_SNP [dm3] 2R_16720222_SNP [dm6]	T	C	3.539e^-4	0.725	INTRON CG30463
3R	11650052	3R_11650052_SNP [dm3] 3R_15824330_SNP [dm6]	A	T	3.545e^-4	0.725	UTR_3_PRIME rec DOWNSTREAM alpha-Man-IIb
X	13185865	X_13185865_SNP [dm3] X_13291832_SNP [dm6]	C	T	3.558e^-4	0.725	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17620329	2R_17620329_SNP [dm3] 2R_21732824_SNP [dm6]	C	T	3.562e^-4	0.725	INTERGENIC
3L	19763975	3L_19763975_SNP [dm3] 3L_19770875_SNP [dm6]	T	G	3.583e^-4	0.725	INTRON CG42637 & 1 other
3L	9865553	3L_9865553_SNP [dm3] 3L_9872453_SNP [dm6]	T	A	3.585e^-4	0.725	INTERGENIC
3L	19438006	3L_19438006_SNP [dm3] 3L_19444906_SNP [dm6]	C	T	3.596e^-4	0.725	INTRON CG33062
3L	4631703	3L_4631703_SNP [dm3] 3L_4631703_SNP [dm6]	A	T	3.598e^-4	0.725	INTRON axo
2L	16653061	2L_16653061_SNP [dm3] 2L_16653061_SNP [dm6]	A	G	3.599e^-4	0.725	INTRON CG42389	TF binding site mE1_TFBS_inv
3R	20983718	3R_20983718_INS [dm3] 3R_25157996_INS [dm6]	G	GGG	3.599e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26693888	3R_26693888_SNP [dm3] 3R_30868166_SNP [dm6]	C	G	3.599e^-4	0.725	INTRON Cpr100A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10087546	2R_10087546_SNP [dm3] 2R_14200041_SNP [dm6]	T	A	3.607e^-4	0.725	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18971487	X_18971487_SNP [dm3] X_19077454_SNP [dm6]	C	T	3.610e^-4	0.725	UPSTREAM CG7406 INTERGENIC
2L	2866553	2L_2866553_SNP [dm3] 2L_2866553_SNP [dm6]	A	G	3.611e^-4	0.725	SYNONYMOUS_CODING CG2991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16720188	2R_16720188_SNP [dm3] 2R_20832683_SNP [dm6]	T	C	3.612e^-4	0.725	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	11812932	X_11812932_SNP [dm3] X_11918899_SNP [dm6]	C	T	3.623e^-4	0.725	UPSTREAM CR32661 DOWNSTREAM CR43157 INTERGENIC
3L	3101685	3L_3101685_SNP [dm3] 3L_3101685_SNP [dm6]	A	C	3.629e^-4	0.725	INTRON Cht7
3R	25512872	3R_25512872_SNP [dm3] 3R_29687150_SNP [dm6]	T	A	3.639e^-4	0.725	UPSTREAM Obp99c INTRON Obp99c
X	3876577	X_3876577_SNP [dm3] X_3982544_SNP [dm6]	G	A	3.648e^-4	0.725	INTERGENIC
3L	10387281	3L_10387281_SNP [dm3] 3L_10394181_SNP [dm6]	G	A	3.655e^-4	0.725	INTERGENIC
2L	10224006	2L_10224006_SNP [dm3] 2L_10224006_SNP [dm6]	A	C	3.670e^-4	0.725	SYNONYMOUS_CODING CG4908 DOWNSTREAM CG5708	TF binding site mE1_TFBS_sens
3L	10800476	3L_10800476_SNP [dm3] 3L_10807376_SNP [dm6]	C	T	3.679e^-4	0.725	INTERGENIC
X	19056380	X_19056380_SNP [dm3] X_19162347_SNP [dm6]	T	G	3.686e^-4	0.725	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	11293462	3R_11293462_DEL [dm3] 3R_15467740_DEL [dm6]	AATTCCATAATA...	A	3.688e^-4	0.725	INTRON AdamTS-A
2L	20052562	2L_20052562_SNP [dm3] 2L_20052562_SNP [dm6]	T	A	3.689e^-4	0.725	INTRON sNPF
X	16819900	X_16819900_SNP [dm3] X_16925867_SNP [dm6]	A	C	3.695e^-4	0.725	INTRON CG4928
3R	26659819	3R_26659819_SNP [dm3] 3R_30834097_SNP [dm6]	A	T	3.695e^-4	0.725	INTRON CG15544
3R	20352635	3R_20352635_SNP [dm3] 3R_24526913_SNP [dm6]	C	G	3.696e^-4	0.725	INTRON CG13618
3L	4494831	3L_4494831_SNP [dm3] 3L_4494831_SNP [dm6]	A	G	3.697e^-4	0.725	UPSTREAM CR44709 INTERGENIC
2R	9485874	2R_9485874_SNP [dm3] 2R_13598369_SNP [dm6]	C	T	3.708e^-4	0.725	SYNONYMOUS_CODING S-Lap5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16815859	X_16815859_SNP [dm3] X_16921826_SNP [dm6]	A	T	3.708e^-4	0.725	INTRON CG4928
2R	16173467	2R_16173467_SNP [dm3] 2R_20285962_SNP [dm6]	G	C	3.722e^-4	0.725	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
X	8851372	X_8851372_SNP [dm3] X_8957339_SNP [dm6]	G	A	3.723e^-4	0.725	INTRON rdgA
X	8702310	X_8702310_SNP [dm3] X_8808277_SNP [dm6]	C	T	3.727e^-4	0.725	INTERGENIC
3R	11294830	3R_11294830_SNP [dm3] 3R_15469108_SNP [dm6]	A	G	3.736e^-4	0.725	INTRON AdamTS-A
3L	8921031	3L_8921031_SNP [dm3] 3L_8927931_SNP [dm6]	G	A	3.746e^-4	0.725	INTRON Tsp66E
3L	3565389	3L_3565389_SNP [dm3] 3L_3565389_SNP [dm6]	C	A	3.750e^-4	0.725	INTRON Eip63E
2R	7541491	2R_7541491_SNP [dm3] 2R_11653986_SNP [dm6]	G	C	3.750e^-4	0.725	UPSTREAM CG13198 INTRON Roc2
X	4908227	X_4908227_SNP [dm3] X_5014194_SNP [dm6]	T	C	3.753e^-4	0.725	INTRON CR44833
2L	8275130	2L_8275130_SNP [dm3] 2L_8275130_SNP [dm6]	C	G	3.754e^-4	0.725	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2745034	2L_2745034_SNP [dm3] 2L_2745034_SNP [dm6]	A	G	3.755e^-4	0.725	UPSTREAM Cwc25 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22612667	3R_22612667_SNP [dm3] 3R_26786945_SNP [dm6]	C	A	3.755e^-4	0.725	INTERGENIC
3L	22995590	3L_22995590_SNP [dm3] 3L_23002490_SNP [dm6]	T	A	3.772e^-4	0.725	INTRON nrm
3R	11596895	3R_11596895_SNP [dm3] 3R_15771173_SNP [dm6]	C	T	3.772e^-4	0.725	INTERGENIC	transposable element FlyBase
X	20605095	X_20605095_SNP [dm3] X_20734068_SNP [dm6]	T	C	3.775e^-4	0.725	DOWNSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3701267	3L_3701267_SNP [dm3] 3L_3701267_SNP [dm6]	C	T	3.781e^-4	0.725	INTERGENIC
2L	6453981	2L_6453981_SNP [dm3] 2L_6453981_SNP [dm6]	C	T	3.782e^-4	0.725	INTRON retm	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17681585	3R_17681585_SNP [dm3] 3R_21855863_SNP [dm6]	T	A	3.786e^-4	0.725	SYNONYMOUS_CODING glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15651405	2L_15651405_SNP [dm3] 2L_15651405_SNP [dm6]	C	T	3.788e^-4	0.725	SYNONYMOUS_CODING CG4587
X	14748005	X_14748005_SNP [dm3] X_14853972_SNP [dm6]	C	T	3.790e^-4	0.725	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	12727311	3L_12727311_SNP [dm3] 3L_12734211_SNP [dm6]	T	C	3.792e^-4	0.725	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3097392	2L_3097392_SNP [dm3] 2L_3097392_SNP [dm6]	A	G	3.798e^-4	0.725	INTRON toc
3R	26815670	3R_26815670_SNP [dm3] 3R_30989948_SNP [dm6]	T	A	3.798e^-4	0.725	UTR_5_PRIME CG31008 INTRON 5-HT7
2L	3940876	2L_3940876_SNP [dm3] 2L_3940876_SNP [dm6]	A	T	3.802e^-4	0.725	INTRON fred
3L	2955443	3L_2955443_SNP [dm3] 3L_2955443_SNP [dm6]	A	G	3.802e^-4	0.725	SYNONYMOUS_CODING Shab	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16307207	2R_16307207_SNP [dm3] 2R_20419702_SNP [dm6]	A	G	3.803e^-4	0.725	INTERGENIC
3R	10467727	3R_10467727_SNP [dm3] 3R_14642005_SNP [dm6]	G	T	3.805e^-4	0.725	DOWNSTREAM l_3_L1231 & 1 other INTRON CG7886	TF binding site BDTNP1_TFBS_twi
2R	7398649	2R_7398649_SNP [dm3] 2R_11511144_SNP [dm6]	A	C	3.806e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2773701	3L_2773701_SNP [dm3] 3L_2773701_SNP [dm6]	T	C	3.811e^-4	0.725	NON_SYNONYMOUS_CODING CG12093 UPSTREAM Atg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10006290	3L_10006290_SNP [dm3] 3L_10013190_SNP [dm6]	A	G	3.818e^-4	0.725	INTRON dpr6	TF binding site mE1_TFBS_HSA
X	6318588	X_6318588_SNP [dm3] X_6424555_SNP [dm6]	C	T	3.825e^-4	0.725	INTRON CG42340
2L	6315437	2L_6315437_SNP [dm3] 2L_6315437_SNP [dm6]	G	A	3.828e^-4	0.725	INTRON Ddr
X	17874572	X_17874572_SNP [dm3] X_17980539_SNP [dm6]	C	A	3.829e^-4	0.725	INTRON Sh
3R	16720747	3R_16720747_SNP [dm3] 3R_20895025_SNP [dm6]	G	A	3.829e^-4	0.725	UTR_3_PRIME CG10830
2R	11996556	2R_11996556_SNP [dm3] 2R_16109051_SNP [dm6]	C	T	3.835e^-4	0.725	SYNONYMOUS_CODING Ric	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16278988	2R_16278988_SNP [dm3] 2R_20391483_SNP [dm6]	C	A	3.840e^-4	0.725	INTERGENIC
3L	14910041	3L_14910041_SNP [dm3] 3L_14916941_SNP [dm6]	C	T	3.860e^-4	0.725	INTRON DCX-EMAP
2L	12229472	2L_12229472_SNP [dm3] 2L_12229472_SNP [dm6]	G	A	3.864e^-4	0.725	INTRON aret
2L	9312402	2L_9312402_SNP [dm3] 2L_9312402_SNP [dm6]	C	G	3.865e^-4	0.725	INTERGENIC
X	16815805	X_16815805_SNP [dm3] X_16921772_SNP [dm6]	T	G	3.870e^-4	0.725	INTRON CG4928
2R	15535313	2R_15535313_SNP [dm3] 2R_19647808_SNP [dm6]	T	G	3.885e^-4	0.725	UPSTREAM CG15905 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13355403	3R_13355403_SNP [dm3] 3R_17529681_SNP [dm6]	G	C	3.891e^-4	0.725	INTERGENIC
X	569466	X_569466_SNP [dm3] X_675433_SNP [dm6]	T	G	3.893e^-4	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12764209	X_12764209_SNP [dm3] X_12870176_SNP [dm6]	C	T	3.894e^-4	0.725	INTRON Pde9
X	22015405	X_22015405_SNP [dm3] X_22613569_SNP [dm6]	C	G	3.896e^-4	0.725	INTRON Cda4
3L	5043646	3L_5043646_SNP [dm3] 3L_5043646_SNP [dm6]	A	T	3.897e^-4	0.725	INTRON Con	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5170662	3L_5170662_SNP [dm3] 3L_5177562_SNP [dm6]	T	G	3.900e^-4	0.725	INTRON shep
3L	17591880	3L_17591880_DEL [dm3] 3L_17598780_DEL [dm6]	AC	A	3.901e^-4	0.725	INTRON Eip74EF
3L	5784215	3L_5784215_SNP [dm3] 3L_5791115_SNP [dm6]	C	T	3.901e^-4	0.725	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19163032	X_19163032_SNP [dm3] X_19268999_SNP [dm6]	A	G	3.907e^-4	0.725	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	15253600	2L_15253600_INS [dm3] 2L_15253600_INS [dm6]	T	TTTT	3.909e^-4	0.725	UTR_3_PRIME dao DOWNSTREAM dao
2L	10753982	2L_10753982_SNP [dm3] 2L_10753982_SNP [dm6]	T	A	3.912e^-4	0.725	UTR_5_PRIME CG17124 INTRON CG17124
3L	8041494	3L_8041494_SNP [dm3] 3L_8048394_SNP [dm6]	T	A	3.913e^-4	0.725	UTR_3_PRIME nmo INTRON nmo
2L	10581311	2L_10581311_SNP [dm3] 2L_10581311_SNP [dm6]	T	G	3.915e^-4	0.725	NON_SYNONYMOUS_CODING CG34161 DOWNSTREAM CG34160 INTRON Trim9
2R	16175792	2R_16175792_SNP [dm3] 2R_20288287_SNP [dm6]	T	A	3.919e^-4	0.725	UTR_3_PRIME CG34199 DOWNSTREAM Cpr56F
2L	1293416	2L_1293416_SNP [dm3] 2L_1293416_SNP [dm6]	T	C	3.922e^-4	0.725	SYNONYMOUS_CODING robo3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14769386	3L_14769386_SNP [dm3] 3L_14776286_SNP [dm6]	C	A	3.924e^-4	0.725	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10387233	3L_10387233_SNP [dm3] 3L_10394133_SNP [dm6]	T	A	3.930e^-4	0.725	INTERGENIC
X	12812575	X_12812575_SNP [dm3] X_12918542_SNP [dm6]	T	C	3.932e^-4	0.725	INTRON fne
X	9559372	X_9559372_SNP [dm3] X_9665339_SNP [dm6]	A	T	3.941e^-4	0.725	DOWNSTREAM nej INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25304101	3R_25304101_DEL [dm3] 3R_29478379_DEL [dm6]	TT	T	3.943e^-4	0.725	UPSTREAM Ptp99A INTRON Ptp99A

By genomic position
Variant impact
Gene name

sd_StartleRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results