DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.911e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.01292
In_2L_t	0.06027

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2226 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	23033953	3L_23033953_SNP [dm3] 3L_23040853_SNP [dm6]	T	A	2.001e^-6	0.832	DOWNSTREAM nrm INTERGENIC
3L	4377238	3L_4377238_SNP [dm3] 3L_4377238_SNP [dm6]	A	T	2.789e^-6	0.832	DOWNSTREAM CR44360 INTRON DopEcR
3R	25210851	3R_25210851_SNP [dm3] 3R_29385129_SNP [dm6]	C	A	2.929e^-6	0.832	INTRON Ptp99A
X	13351507	X_13351507_SNP [dm3] X_13457474_SNP [dm6]	T	C	3.108e^-6	0.832	NON_SYNONYMOUS_CODING CG34324 INTRON Neto
3R	21311871	3R_21311871_SNP [dm3] 3R_25486149_SNP [dm6]	C	T	3.541e^-6	0.832	UTR_3_PRIME Dhap-at DOWNSTREAM CG42488 & 1 other	TF binding site mE1_TFBS_cad
3R	9884122	3R_9884122_SNP [dm3] 3R_14058400_SNP [dm6]	A	C	4.073e^-6	0.832	INTRON foxo
3L	23141225	3L_23141225_SNP [dm3] 3L_23148125_SNP [dm6]	C	T	4.249e^-6	0.832	NON_SYNONYMOUS_CODING CG32350
3L	5523009	3L_5523009_SNP [dm3] 3L_5529909_SNP [dm6]	A	T	4.498e^-6	0.832	UPSTREAM Lkr INTERGENIC
3R	11543653	3R_11543653_SNP [dm3] 3R_15717931_SNP [dm6]	G	C	5.033e^-6	0.832	INTERGENIC
2L	16782112	2L_16782112_SNP [dm3] 2L_16782112_SNP [dm6]	T	C	5.789e^-6	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2L	16782062	2L_16782062_SNP [dm3] 2L_16782062_SNP [dm6]	G	A	6.629e^-6	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3R	25210781	3R_25210781_SNP [dm3] 3R_29385059_SNP [dm6]	C	T	7.040e^-6	0.832	INTRON Ptp99A
2L	16781974	2L_16781974_DEL [dm3] 2L_16781974_DEL [dm6]	GG	A	7.463e^-6	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3R	21486240	3R_21486240_SNP [dm3] 3R_25660518_SNP [dm6]	G	A	8.566e^-6	0.832	INTRON Tnks	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25210808	3R_25210808_INS [dm3] 3R_29385086_INS [dm6]	C	CACC	8.870e^-6	0.832	INTRON Ptp99A
3L	8675181	3L_8675181_SNP [dm3] 3L_8682081_SNP [dm6]	G	A	9.487e^-6	0.832	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	16782103	2L_16782103_SNP [dm3] 2L_16782103_SNP [dm6]	T	A	9.886e^-6	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	18819641	3L_18819641_SNP [dm3] 3L_18826541_SNP [dm6]	T	C	9.940e^-6	0.832	SYNONYMOUS_CODING Cat	TF binding site mE1_TFBS_chinmo
3L	4700971	3L_4700971_SNP [dm3] 3L_4700971_SNP [dm6]	C	A	1.037e^-5	0.832	INTRON RhoGEF64C
3R	5443035	3R_5443035_SNP [dm3] 3R_9617313_SNP [dm6]	A	G	1.044e^-5	0.832	INTRON CG8312
3R	5366433	3R_5366433_SNP [dm3] 3R_9540711_SNP [dm6]	A	T	1.047e^-5	0.832	SYNONYMOUS_CODING mura	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10930521	3L_10930521_DEL [dm3] 3L_10937421_DEL [dm6]	AAG	A	1.172e^-5	0.832	INTERGENIC
3L	10930525	3L_10930525_INS [dm3] 3L_10937425_INS [dm6]	T	TAATTAA	1.172e^-5	0.832	INTERGENIC
3L	5771288	3L_5771288_SNP [dm3] 3L_5778188_SNP [dm6]	A	G	1.227e^-5	0.832	SYNONYMOUS_CODING Myt1 UPSTREAM vito
3L	17909708	3L_17909708_SNP [dm3] 3L_17916608_SNP [dm6]	A	G	1.287e^-5	0.832	INTERGENIC
3L	9777329	3L_9777329_SNP [dm3] 3L_9784229_SNP [dm6]	T	G	1.515e^-5	0.832	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4880023	2L_4880023_SNP [dm3] 2L_4880023_SNP [dm6]	G	A	1.534e^-5	0.832	INTRON Cf2
3L	4377231	3L_4377231_SNP [dm3] 3L_4377231_SNP [dm6]	G	A	1.546e^-5	0.832	DOWNSTREAM CR44360 INTRON DopEcR
2L	3388550	2L_3388550_SNP [dm3] 2L_3388550_SNP [dm6]	T	G	1.596e^-5	0.832	UPSTREAM Sfp23F & 2 others INTERGENIC
3L	12612853	3L_12612853_SNP [dm3] 3L_12619753_SNP [dm6]	A	C	1.615e^-5	0.832	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4377232	3L_4377232_SNP [dm3] 3L_4377232_SNP [dm6]	C	A	1.730e^-5	0.832	DOWNSTREAM CR44360 INTRON DopEcR
3L	23048784	3L_23048784_SNP [dm3] 3L_23055684_SNP [dm6]	T	C	1.833e^-5	0.832	INTERGENIC
3L	4701038	3L_4701038_SNP [dm3] 3L_4701038_SNP [dm6]	C	A	1.844e^-5	0.832	INTRON RhoGEF64C
3R	11543738	3R_11543738_SNP [dm3] 3R_15718016_SNP [dm6]	C	T	1.857e^-5	0.832	INTERGENIC
3R	10373679	3R_10373679_SNP [dm3] 3R_14547957_SNP [dm6]	C	G	1.903e^-5	0.832	INTRON Pde6
3L	4709865	3L_4709865_SNP [dm3] 3L_4709865_SNP [dm6]	T	C	2.018e^-5	0.832	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4709870	3L_4709870_SNP [dm3] 3L_4709870_SNP [dm6]	A	C	2.018e^-5	0.832	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16782100	2L_16782100_SNP [dm3] 2L_16782100_SNP [dm6]	A	C	2.085e^-5	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2L	7209272	2L_7209272_SNP [dm3] 2L_7209272_SNP [dm6]	T	A	2.120e^-5	0.832	INTRON CG13784
X	2698884	X_2698884_SNP [dm3] X_2804851_SNP [dm6]	A	C	2.189e^-5	0.832	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14141249	2R_14141249_SNP [dm3] 2R_18253744_SNP [dm6]	C	T	2.271e^-5	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18364980	3L_18364980_SNP [dm3] 3L_18371880_SNP [dm6]	C	T	2.312e^-5	0.832	INTERGENIC
3R	21681629	3R_21681629_SNP [dm3] 3R_25855907_SNP [dm6]	C	G	2.330e^-5	0.832	UPSTREAM CG5890 INTERGENIC
2L	4505507	2L_4505507_SNP [dm3] 2L_4505507_SNP [dm6]	G	A	2.382e^-5	0.832	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7533468	3L_7533468_SNP [dm3] 3L_7540368_SNP [dm6]	T	C	2.429e^-5	0.832	SYNONYMOUS_CODING CG32374 UPSTREAM CG16998 DOWNSTREAM lqf
3L	7330950	3L_7330950_SNP [dm3] 3L_7337850_SNP [dm6]	T	C	2.436e^-5	0.832	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12818569	2R_12818569_SNP [dm3] 2R_16931064_SNP [dm6]	T	C	2.524e^-5	0.832	INTRON Pkc53E
3R	24205174	3R_24205174_SNP [dm3] 3R_28379452_SNP [dm6]	A	G	2.579e^-5	0.832	INTERGENIC
3R	21681620	3R_21681620_SNP [dm3] 3R_25855898_SNP [dm6]	A	G	2.589e^-5	0.832	UPSTREAM CG5890 INTERGENIC
2R	16090909	2R_16090909_SNP [dm3] 2R_20203404_SNP [dm6]	C	A	2.621e^-5	0.832	INTERGENIC
3L	16137545	3L_16137545_SNP [dm3] 3L_16144445_SNP [dm6]	A	C	2.627e^-5	0.832	UPSTREAM CG5151 & 1 other INTRON CG5151
3L	990355	3L_990355_SNP [dm3] 3L_990355_SNP [dm6]	A	C	2.641e^-5	0.832	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21681623	3R_21681623_SNP [dm3] 3R_25855901_SNP [dm6]	T	C	2.663e^-5	0.832	UPSTREAM CG5890 INTERGENIC
2L	8262214	2L_8262214_SNP [dm3] 2L_8262214_SNP [dm6]	G	A	2.667e^-5	0.832	SYNONYMOUS_CODING Btk29A
3L	15055734	3L_15055734_SNP [dm3] 3L_15062634_SNP [dm6]	T	C	2.714e^-5	0.832	UPSTREAM CG13460 & 1 other INTRON Sytbeta
3L	7331186	3L_7331186_SNP [dm3] 3L_7338086_SNP [dm6]	C	T	2.757e^-5	0.832	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12538816	3L_12538816_SNP [dm3] 3L_12545716_SNP [dm6]	T	C	2.958e^-5	0.832	INTRON sowah
3R	5648003	3R_5648003_SNP [dm3] 3R_9822281_SNP [dm6]	A	G	2.974e^-5	0.832	DOWNSTREAM CG34302 INTERGENIC
3L	23115613	3L_23115613_SNP [dm3] 3L_23122513_SNP [dm6]	G	A	3.089e^-5	0.832	INTERGENIC	transposable element FlyBase
2L	15627004	2L_15627004_SNP [dm3] 2L_15627004_SNP [dm6]	A	G	3.273e^-5	0.832	INTERGENIC
2L	10521858	2L_10521858_SNP [dm3] 2L_10521858_SNP [dm6]	T	C	3.356e^-5	0.832	INTERGENIC
2L	13313637	2L_13313637_SNP [dm3] 2L_13313637_SNP [dm6]	C	A	3.366e^-5	0.832	INTRON CG43778	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13113053	X_13113053_SNP [dm3] X_13219020_SNP [dm6]	G	T	3.389e^-5	0.832	INTRON mew
3R	17618570	3R_17618570_SNP [dm3] 3R_21792848_SNP [dm6]	A	G	3.422e^-5	0.832	INTRON CASK	TF binding site mE1_TFBS_cad
2R	14303713	2R_14303713_SNP [dm3] 2R_18416208_SNP [dm6]	G	C	3.448e^-5	0.832	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12391762	X_12391762_SNP [dm3] X_12497729_SNP [dm6]	T	G	3.532e^-5	0.832	INTRON CG2556 EXON snoRNA:Me18S-G894
2L	5502830	2L_5502830_SNP [dm3] 2L_5502830_SNP [dm6]	A	G	3.567e^-5	0.832	INTERGENIC
3L	17027644	3L_17027644_SNP [dm3] 3L_17034544_SNP [dm6]	G	A	3.584e^-5	0.832	UPSTREAM CR43250 INTERGENIC
3L	995863	3L_995863_SNP [dm3] 3L_995863_SNP [dm6]	G	T	3.671e^-5	0.832	DOWNSTREAM trio & 1 other INTERGENIC
3L	23148368	3L_23148368_SNP [dm3] 3L_23155268_SNP [dm6]	A	C	3.697e^-5	0.832	INTERGENIC	transposable element FlyBase
2R	18078525	2R_18078525_SNP [dm3] 2R_22191020_SNP [dm6]	C	A	3.712e^-5	0.832	SYNONYMOUS_CODING Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16293730	2L_16293730_SNP [dm3] 2L_16293730_SNP [dm6]	A	T	3.726e^-5	0.832	UPSTREAM CG13258 & 2 others INTERGENIC
3L	15943355	3L_15943355_SNP [dm3] 3L_15950255_SNP [dm6]	G	A	3.847e^-5	0.832	INTRON Pka-C3
3R	16233661	3R_16233661_SNP [dm3] 3R_20407939_SNP [dm6]	A	G	3.876e^-5	0.832	UPSTREAM CG10881 & 1 other INTRON Gfrl
3R	5651025	3R_5651025_SNP [dm3] 3R_9825303_SNP [dm6]	C	G	3.877e^-5	0.832	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	11006745	3R_11006745_SNP [dm3] 3R_15181023_SNP [dm6]	G	C	3.884e^-5	0.832	UPSTREAM Mf INTRON Gyc88E & 1 other
3R	7520788	3R_7520788_SNP [dm3] 3R_11695066_SNP [dm6]	G	A	3.979e^-5	0.832	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2680513	3L_2680513_SNP [dm3] 3L_2680513_SNP [dm6]	A	C	4.002e^-5	0.832	INTRON Fife
2R	9330075	2R_9330075_SNP [dm3] 2R_13442570_SNP [dm6]	A	G	4.067e^-5	0.832	DOWNSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_cad
3L	23019124	3L_23019124_SNP [dm3] 3L_23026024_SNP [dm6]	T	A	4.178e^-5	0.832	NON_SYNONYMOUS_CODING nrm INTRON nrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13439981	2L_13439981_SNP [dm3] 2L_13439981_SNP [dm6]	C	T	4.218e^-5	0.832	DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
3L	4701112	3L_4701112_SNP [dm3] 3L_4701112_SNP [dm6]	T	C	4.225e^-5	0.832	INTRON RhoGEF64C
X	12090730	X_12090730_SNP [dm3] X_12196697_SNP [dm6]	T	A	4.264e^-5	0.832	INTRON Ten-a
3R	15363310	3R_15363310_SNP [dm3] 3R_19537588_SNP [dm6]	G	A	4.285e^-5	0.832	INTRON Dys
3L	18240799	3L_18240799_SNP [dm3] 3L_18247699_SNP [dm6]	C	T	4.301e^-5	0.832	INTERGENIC
2L	15617846	2L_15617846_SNP [dm3] 2L_15617846_SNP [dm6]	T	C	4.302e^-5	0.832	UTR_3_PRIME CG11865
3R	16176619	3R_16176619_SNP [dm3] 3R_20350897_SNP [dm6]	T	G	4.331e^-5	0.832	INTERGENIC
X	17394889	X_17394889_SNP [dm3] X_17500856_SNP [dm6]	A	T	4.419e^-5	0.832	INTRON CG43658
2R	10228102	2R_10228102_INS [dm3] 2R_14340597_INS [dm6]	A	ACCCCTGCGAA...	4.441e^-5	0.832	INTRON Shroom
3L	12538817	3L_12538817_SNP [dm3] 3L_12545717_SNP [dm6]	C	T	4.471e^-5	0.832	INTRON sowah
3R	11596080	3R_11596080_SNP [dm3] 3R_15770358_SNP [dm6]	A	T	4.627e^-5	0.832	INTERGENIC
3L	995306	3L_995306_SNP [dm3] 3L_995306_SNP [dm6]	A	C	4.721e^-5	0.832	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	8294112	2R_8294112_SNP [dm3] 2R_12406607_SNP [dm6]	T	C	4.731e^-5	0.832	UTR_3_PRIME Cpr49Af DOWNSTREAM Cpr49Af
X	14685801	X_14685801_SNP [dm3] X_14791768_SNP [dm6]	C	T	4.772e^-5	0.832	NON_SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
3L	17909009	3L_17909009_SNP [dm3] 3L_17915909_SNP [dm6]	A	T	4.865e^-5	0.832	INTERGENIC	transposable element FlyBase
3L	17909057	3L_17909057_SNP [dm3] 3L_17915957_SNP [dm6]	G	A	4.865e^-5	0.832	INTERGENIC	transposable element FlyBase
3L	17244979	3L_17244979_SNP [dm3] 3L_17251879_SNP [dm6]	T	C	4.924e^-5	0.832	DOWNSTREAM CG6497 INTRON CR43870
2R	12968077	2R_12968077_SNP [dm3] 2R_17080572_SNP [dm6]	G	A	4.979e^-5	0.832	INTRON CG30460
3L	5523021	3L_5523021_SNP [dm3] 3L_5529921_SNP [dm6]	C	T	5.000e^-5	0.832	UPSTREAM Lkr INTERGENIC
3R	9883898	3R_9883898_DEL [dm3] 3R_14058176_DEL [dm6]	CTAAATTCGATTCGAATCTA...	C	5.023e^-5	0.832	INTRON foxo
3L	7799380	3L_7799380_SNP [dm3] 3L_7806280_SNP [dm6]	G	A	5.063e^-5	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	12090757	X_12090757_SNP [dm3] X_12196724_SNP [dm6]	T	A	5.076e^-5	0.832	INTRON Ten-a
3R	14148860	3R_14148860_SNP [dm3] 3R_18323138_SNP [dm6]	C	G	5.096e^-5	0.832	INTRON CG31235
3L	7799375	3L_7799375_SNP [dm3] 3L_7806275_SNP [dm6]	C	T	5.103e^-5	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	16723767	3L_16723767_SNP [dm3] 3L_16730667_SNP [dm6]	A	T	5.132e^-5	0.832	INTRON Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	996409	3L_996409_SNP [dm3] 3L_996409_SNP [dm6]	T	C	5.164e^-5	0.832	UTR_3_PRIME trio DOWNSTREAM CG12038 & 1 other
2R	16693003	2R_16693003_SNP [dm3] 2R_20805498_SNP [dm6]	C	T	5.181e^-5	0.832	INTERGENIC
3L	17901632	3L_17901632_SNP [dm3] 3L_17908532_SNP [dm6]	A	G	5.225e^-5	0.832	UPSTREAM Prestin DOWNSTREAM CG5290 INTRON CG14353	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7520807	3R_7520807_SNP [dm3] 3R_11695085_SNP [dm6]	C	T	5.253e^-5	0.832	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520825	3R_7520825_SNP [dm3] 3R_11695103_SNP [dm6]	T	A	5.253e^-5	0.832	UPSTREAM Fer3 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8504649	3L_8504649_SNP [dm3] 3L_8511549_SNP [dm6]	C	A	5.293e^-5	0.832	SYNONYMOUS_CODING CG6745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12538813	3L_12538813_SNP [dm3] 3L_12545713_SNP [dm6]	C	T	5.349e^-5	0.832	INTRON sowah
3R	21289246	3R_21289246_SNP [dm3] 3R_25463524_SNP [dm6]	G	A	5.353e^-5	0.832	INTRON Fur1
3L	4710296	3L_4710296_SNP [dm3] 3L_4710296_SNP [dm6]	A	C	5.454e^-5	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8263358	2L_8263358_DEL [dm3] 2L_8263358_DEL [dm6]	TT	T	5.603e^-5	0.832	INTRON Btk29A
3L	1848323	3L_1848323_SNP [dm3] 3L_1848323_SNP [dm6]	T	A	5.682e^-5	0.832	INTERGENIC
3L	16721057	3L_16721057_SNP [dm3] 3L_16727957_SNP [dm6]	A	C	5.701e^-5	0.832	NON_SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad
2L	9551241	2L_9551241_SNP [dm3] 2L_9551241_SNP [dm6]	C	G	5.818e^-5	0.832	UPSTREAM jp INTRON jp
2R	8659047	2R_8659047_SNP [dm3] 2R_12771542_SNP [dm6]	G	A	5.829e^-5	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9145702	2R_9145702_SNP [dm3] 2R_13258197_SNP [dm6]	A	C	5.853e^-5	0.832	NON_SYNONYMOUS_CODING CG10799 DOWNSTREAM CG4716
3L	7799352	3L_7799352_SNP [dm3] 3L_7806252_SNP [dm6]	C	T	5.894e^-5	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	15033925	3L_15033925_SNP [dm3] 3L_15040825_SNP [dm6]	A	G	6.062e^-5	0.832	DOWNSTREAM Rpn12R INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	8098093	X_8098093_SNP [dm3] X_8204060_SNP [dm6]	T	G	6.116e^-5	0.832	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9211281	2L_9211281_SNP [dm3] 2L_9211281_SNP [dm6]	G	A	6.178e^-5	0.832	INTRON tai
3L	23168727	3L_23168727_SNP [dm3] 3L_23175627_SNP [dm6]	A	C	6.264e^-5	0.832	INTRON CG34031	transposable element FlyBase
3R	26297454	3R_26297454_SNP [dm3] 3R_30471732_SNP [dm6]	T	A	6.380e^-5	0.832	INTRON PH4alphaEFB
3L	8401137	3L_8401137_SNP [dm3] 3L_8408037_SNP [dm6]	T	A	6.409e^-5	0.832	DOWNSTREAM CG13667 INTRON Oseg1
2L	14866127	2L_14866127_SNP [dm3] 2L_14866127_SNP [dm6]	C	T	6.564e^-5	0.832	INTERGENIC
2L	9551242	2L_9551242_SNP [dm3] 2L_9551242_SNP [dm6]	G	T	6.649e^-5	0.832	UPSTREAM jp INTRON jp
3L	10471000	3L_10471000_SNP [dm3] 3L_10477900_SNP [dm6]	G	T	6.764e^-5	0.832	INTERGENIC
2L	5801146	2L_5801146_SNP [dm3] 2L_5801146_SNP [dm6]	G	T	6.768e^-5	0.832	SYNONYMOUS_CODING CG14005 UPSTREAM CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13093069	2R_13093069_SNP [dm3] 2R_17205564_SNP [dm6]	A	T	6.781e^-5	0.832	NON_SYNONYMOUS_CODING CG43237
3L	5775282	3L_5775282_SNP [dm3] 3L_5782182_SNP [dm6]	A	C	6.830e^-5	0.832	NON_SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi
3L	23073560	3L_23073560_SNP [dm3] 3L_23080460_SNP [dm6]	A	G	6.850e^-5	0.832	INTERGENIC	transposable element FlyBase
2L	3574841	2L_3574841_SNP [dm3] 2L_3574841_SNP [dm6]	T	G	6.860e^-5	0.832	UPSTREAM CR43822 INTERGENIC
3R	12954681	3R_12954681_SNP [dm3] 3R_17128959_SNP [dm6]	C	T	6.865e^-5	0.832	SYNONYMOUS_CODING CG31265 DOWNSTREAM CG31269 & 1 other
3L	23043782	3L_23043782_INS [dm3] 3L_23050682_INS [dm6]	C	CCCTCCAGAC	6.926e^-5	0.832	INTERGENIC	transposable element FlyBase
3L	23080222	3L_23080222_SNP [dm3] 3L_23087122_SNP [dm6]	A	G	7.000e^-5	0.832	INTERGENIC	transposable element FlyBase
3L	3726865	3L_3726865_SNP [dm3] 3L_3726865_SNP [dm6]	T	C	7.014e^-5	0.832	INTRON CG32264
3R	5047337	3R_5047337_DEL [dm3] 3R_9221615_DEL [dm6]	GTAA	G	7.063e^-5	0.832	INTRON pum	TF binding site BDTNP1_TFBS_dl
X	2610450	X_2610450_SNP [dm3] X_2716417_SNP [dm6]	A	G	7.086e^-5	0.832	NON_SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9859877	3R_9859877_SNP [dm3] 3R_14034155_SNP [dm6]	T	C	7.187e^-5	0.832	SPLICE_SITE_REGION CG3061 DOWNSTREAM CG9922 INTRON CG3061	TF binding site mE1_TFBS_sens
X	13270076	X_13270076_DEL [dm3] X_13376043_DEL [dm6]	TT	T	7.217e^-5	0.832	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17908996	3L_17908996_INS [dm3] 3L_17915896_INS [dm6]	A	AGGAATATA	7.356e^-5	0.832	INTERGENIC	transposable element FlyBase
3L	17909002	3L_17909002_SNP [dm3] 3L_17915902_SNP [dm6]	A	G	7.356e^-5	0.832	INTERGENIC	transposable element FlyBase
3L	17909013	3L_17909013_SNP [dm3] 3L_17915913_SNP [dm6]	A	G	7.356e^-5	0.832	INTERGENIC	transposable element FlyBase
2L	16293805	2L_16293805_SNP [dm3] 2L_16293805_SNP [dm6]	C	T	7.385e^-5	0.832	UPSTREAM CG13258 & 2 others INTERGENIC
3L	23076117	3L_23076117_SNP [dm3] 3L_23083017_SNP [dm6]	T	A	7.398e^-5	0.832	INTERGENIC
3L	18240827	3L_18240827_SNP [dm3] 3L_18247727_SNP [dm6]	C	G	7.509e^-5	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9884110	3R_9884110_SNP [dm3] 3R_14058388_SNP [dm6]	A	T	7.709e^-5	0.832	INTRON foxo
2L	3574334	2L_3574334_SNP [dm3] 2L_3574334_SNP [dm6]	G	A	7.772e^-5	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	9551237	2L_9551237_SNP [dm3] 2L_9551237_SNP [dm6]	A	C	7.776e^-5	0.832	UPSTREAM jp INTRON jp
3L	14954367	3L_14954367_SNP [dm3] 3L_14961267_SNP [dm6]	G	C	7.809e^-5	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9247294	3L_9247294_SNP [dm3] 3L_9254194_SNP [dm6]	G	C	7.866e^-5	0.832	INTRON GluRIB
3L	9247170	3L_9247170_SNP [dm3] 3L_9254070_SNP [dm6]	A	G	7.952e^-5	0.832	INTRON GluRIB
3L	9247185	3L_9247185_SNP [dm3] 3L_9254085_SNP [dm6]	G	A	7.952e^-5	0.832	INTRON GluRIB
3L	13102906	3L_13102906_DEL [dm3] 3L_13109806_DEL [dm6]	ATGTCCGA	A	7.955e^-5	0.832	INTERGENIC
2R	19883730	2R_19883730_SNP [dm3] 2R_23996207_SNP [dm6]	G	A	7.993e^-5	0.832	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15626589	2L_15626589_SNP [dm3] 2L_15626589_SNP [dm6]	T	C	8.022e^-5	0.832	INTERGENIC
3R	6463606	3R_6463606_SNP [dm3] 3R_10637884_SNP [dm6]	T	C	8.216e^-5	0.832	INTRON hth
2R	8931006	2R_8931006_SNP [dm3] 2R_13043501_SNP [dm6]	T	A	8.258e^-5	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h
2L	4341634	2L_4341634_SNP [dm3] 2L_4341634_SNP [dm6]	C	T	8.260e^-5	0.832	SYNONYMOUS_CODING Atet INTRON Atet	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6278429	3R_6278429_SNP [dm3] 3R_10452707_SNP [dm6]	C	T	8.345e^-5	0.832	INTERGENIC
3L	7799586	3L_7799586_SNP [dm3] 3L_7806486_SNP [dm6]	G	C	8.419e^-5	0.832	INTRON CG32369	TF binding site mE1_TFBS_Trl
3L	4701154	3L_4701154_SNP [dm3] 3L_4701154_SNP [dm6]	C	A	8.421e^-5	0.832	INTRON RhoGEF64C
3L	23140729	3L_23140729_SNP [dm3] 3L_23147629_SNP [dm6]	C	G	8.525e^-5	0.832	DOWNSTREAM CG32350 INTERGENIC
2L	18889752	2L_18889752_SNP [dm3] 2L_18889752_SNP [dm6]	G	A	8.537e^-5	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
X	15068918	X_15068918_SNP [dm3] X_15174885_SNP [dm6]	A	T	8.539e^-5	0.832	UPSTREAM CG43737 INTERGENIC
2L	2503989	2L_2503989_SNP [dm3] 2L_2503989_SNP [dm6]	G	A	8.564e^-5	0.832	INTERGENIC
3L	995138	3L_995138_SNP [dm3] 3L_995138_SNP [dm6]	C	T	8.643e^-5	0.832	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3L	15837789	3L_15837789_SNP [dm3] 3L_15844689_SNP [dm6]	T	C	8.773e^-5	0.832	UPSTREAM CG32150 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7992141	2L_7992141_DEL [dm3] 2L_7992141_DEL [dm6]	TCTAGAAACTAGATA...	T	8.862e^-5	0.832	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6009884	2L_6009884_SNP [dm3] 2L_6009884_SNP [dm6]	C	T	9.001e^-5	0.832	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10993441	2L_10993441_SNP [dm3] 2L_10993441_SNP [dm6]	G	A	9.047e^-5	0.832	SPLICE_SITE_REGION CG16833 INTRON CG16833
2R	14305822	2R_14305822_SNP [dm3] 2R_18418317_SNP [dm6]	C	T	9.068e^-5	0.832	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5201127	3R_5201127_SNP [dm3] 3R_9375405_SNP [dm6]	C	T	9.076e^-5	0.832	UPSTREAM FER INTRON FER	regulatory region REDfly_CRMs
3L	17904520	3L_17904520_SNP [dm3] 3L_17911420_SNP [dm6]	G	A	9.109e^-5	0.832	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12563416	2R_12563416_SNP [dm3] 2R_16675911_SNP [dm6]	C	A	9.126e^-5	0.832	INTRON CG30463
2R	18041448	2R_18041448_SNP [dm3] 2R_22153943_SNP [dm6]	T	C	9.195e^-5	0.832	INTRON a
3L	10480108	3L_10480108_SNP [dm3] 3L_10487008_SNP [dm6]	C	T	9.339e^-5	0.832	INTRON A2bp1
3R	19731801	3R_19731801_SNP [dm3] 3R_23906079_SNP [dm6]	A	G	9.366e^-5	0.832	INTRON sba
2R	6058050	2R_6058050_SNP [dm3] 2R_10170545_SNP [dm6]	C	T	9.463e^-5	0.832	INTRON KCNQ
X	7849997	X_7849997_SNP [dm3] X_7955964_SNP [dm6]	T	C	9.684e^-5	0.832	UTR_5_PRIME CG15332 UPSTREAM CG15330 DOWNSTREAM sws
3R	18573816	3R_18573816_SNP [dm3] 3R_22748094_SNP [dm6]	C	G	9.875e^-5	0.832	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site BDTNP1_TFBS_gt mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	4710377	3L_4710377_DEL [dm3] 3L_4710377_DEL [dm6]	AG	A	9.883e^-5	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15604808	3R_15604808_SNP [dm3] 3R_19779086_SNP [dm6]	C	T	9.914e^-5	0.832	SYNONYMOUS_CODING CG11391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9247117	3L_9247117_SNP [dm3] 3L_9254017_SNP [dm6]	T	C	9.947e^-5	0.832	INTRON GluRIB
2R	7688455	2R_7688455_SNP [dm3] 2R_11800950_SNP [dm6]	C	T	9.970e^-5	0.832	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8789253	X_8789253_DEL [dm3] X_8895220_DEL [dm6]	CC	C	9.990e^-5	0.832	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6009719	2L_6009719_SNP [dm3] 2L_6009719_SNP [dm6]	G	A	1.004e^-4	0.832	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4910169	3R_4910169_SNP [dm3] 3R_9084447_SNP [dm6]	A	G	1.005e^-4	0.832	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10963824	2L_10963824_SNP [dm3] 2L_10963824_SNP [dm6]	G	T	1.005e^-4	0.832	UTR_5_PRIME dpr2 INTRON dpr2	TF binding site mE1_TFBS_bab1
3L	13131722	3L_13131722_SNP [dm3] 3L_13138622_SNP [dm6]	T	C	1.007e^-4	0.832	INTERGENIC
3R	10880752	3R_10880752_INS [dm3] 3R_15055030_INS [dm6]	T	TT	1.013e^-4	0.832	UTR_3_PRIME dpr9
3L	7799372	3L_7799372_SNP [dm3] 3L_7806272_SNP [dm6]	T	G	1.013e^-4	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	5194775	3R_5194775_SNP [dm3] 3R_9369053_SNP [dm6]	A	C	1.014e^-4	0.832	SPLICE_SITE_DONOR FER INTRON FER
3R	5128367	3R_5128367_SNP [dm3] 3R_9302645_SNP [dm6]	G	A	1.022e^-4	0.832	INTRON CG8861
3L	17905289	3L_17905289_SNP [dm3] 3L_17912189_SNP [dm6]	G	C	1.023e^-4	0.832	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14303689	2R_14303689_SNP [dm3] 2R_18416184_SNP [dm6]	C	T	1.035e^-4	0.832	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4880074	2L_4880074_SNP [dm3] 2L_4880074_SNP [dm6]	T	G	1.046e^-4	0.832	INTRON Cf2
3L	5773754	3L_5773754_SNP [dm3] 3L_5780654_SNP [dm6]	G	A	1.051e^-4	0.832	SYNONYMOUS_CODING Pmi UTR_5_PRIME PGRP-LD UPSTREAM PGRP-LD EXON CR45026	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	23049469	3L_23049469_SNP [dm3] 3L_23056369_SNP [dm6]	C	T	1.053e^-4	0.832	INTERGENIC	transposable element FlyBase
3L	7799451	3L_7799451_SNP [dm3] 3L_7806351_SNP [dm6]	T	G	1.057e^-4	0.832	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18410670	2R_18410670_SNP [dm3] 2R_22523165_SNP [dm6]	C	T	1.057e^-4	0.832	INTRON px
3L	15884162	3L_15884162_SNP [dm3] 3L_15891062_SNP [dm6]	A	G	1.060e^-4	0.832	INTRON pHCl
3L	21852588	3L_21852588_SNP [dm3] 3L_21859488_SNP [dm6]	C	G	1.062e^-4	0.832	INTRON mub
2L	5940324	2L_5940324_SNP [dm3] 2L_5940324_SNP [dm6]	A	T	1.070e^-4	0.832	DOWNSTREAM CR45288 INTERGENIC
2R	19603112	2R_19603112_SNP [dm3] 2R_23715589_SNP [dm6]	T	C	1.071e^-4	0.832	INTRON Sesn	TF binding site BDTNP1_TFBS_dl
2L	5887410	2L_5887410_SNP [dm3] 2L_5887410_SNP [dm6]	T	G	1.074e^-4	0.832	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other EXON CR44577
3L	23170479	3L_23170479_SNP [dm3] 3L_23177379_SNP [dm6]	A	G	1.077e^-4	0.832	INTRON CG34031	transposable element FlyBase
3R	10532690	3R_10532690_SNP [dm3] 3R_14706968_SNP [dm6]	T	C	1.088e^-4	0.832	INTRON kibra
3R	19731871	3R_19731871_SNP [dm3] 3R_23906149_SNP [dm6]	T	C	1.088e^-4	0.832	INTRON sba
X	4715234	X_4715234_SNP [dm3] X_4821201_SNP [dm6]	A	G	1.095e^-4	0.832	INTERGENIC
3L	14212573	3L_14212573_SNP [dm3] 3L_14219473_SNP [dm6]	C	T	1.100e^-4	0.832	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22279197	3R_22279197_DEL [dm3] 3R_26453475_DEL [dm6]	AGTGATCGT	A	1.104e^-4	0.832	INTRON CG5447
3R	10263540	3R_10263540_SNP [dm3] 3R_14437818_SNP [dm6]	G	A	1.106e^-4	0.832	INTRON cv-c
3R	20840357	3R_20840357_SNP [dm3] 3R_25014635_SNP [dm6]	G	C	1.108e^-4	0.832	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14291438	3L_14291438_SNP [dm3] 3L_14298338_SNP [dm6]	C	T	1.117e^-4	0.832	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	10061504	X_10061504_SNP [dm3] X_10167471_SNP [dm6]	T	A	1.119e^-4	0.832	INTRON CR44894 & 1 other
2R	6715919	2R_6715919_SNP [dm3] 2R_10828414_SNP [dm6]	A	G	1.122e^-4	0.832	UTR_3_PRIME CG12344 DOWNSTREAM CG12325
3L	15884213	3L_15884213_SNP [dm3] 3L_15891113_SNP [dm6]	C	A	1.122e^-4	0.832	INTRON pHCl
3R	24204667	3R_24204667_SNP [dm3] 3R_28378945_SNP [dm6]	C	T	1.127e^-4	0.832	INTERGENIC
3L	8645748	3L_8645748_SNP [dm3] 3L_8652648_SNP [dm6]	G	A	1.132e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	992138	3L_992138_INS [dm3] 3L_992138_INS [dm6]	T	TGAT	1.145e^-4	0.832	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3L	2674287	3L_2674287_SNP [dm3] 3L_2674287_SNP [dm6]	G	A	1.148e^-4	0.832	INTRON Fife
3L	12938764	3L_12938764_SNP [dm3] 3L_12945664_SNP [dm6]	A	G	1.150e^-4	0.832	INTERGENIC
2R	19599322	2R_19599322_INS [dm3] 2R_23711799_INS [dm6]	T	TC	1.151e^-4	0.832	INTERGENIC
X	6323115	X_6323115_SNP [dm3] X_6429082_SNP [dm6]	T	G	1.153e^-4	0.832	INTRON CG42340
2R	13094406	2R_13094406_SNP [dm3] 2R_17206901_SNP [dm6]	T	C	1.156e^-4	0.832	INTERGENIC
2L	4880079	2L_4880079_SNP [dm3] 2L_4880079_SNP [dm6]	A	T	1.157e^-4	0.832	INTRON Cf2
3L	3986843	3L_3986843_SNP [dm3] 3L_3986843_SNP [dm6]	T	C	1.160e^-4	0.832	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	14303620	2R_14303620_SNP [dm3] 2R_18416115_SNP [dm6]	G	A	1.167e^-4	0.832	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4751647	3L_4751647_SNP [dm3] 3L_4751647_SNP [dm6]	T	C	1.180e^-4	0.832	DOWNSTREAM CG12493 INTRON RhoGEF64C
3R	21681335	3R_21681335_INS [dm3] 3R_25855613_INS [dm6]	G	GTGTGCGAGG	1.186e^-4	0.832	UPSTREAM CG5890 INTERGENIC
3R	21681337	3R_21681337_INS [dm3] 3R_25855615_INS [dm6]	A	ATAAAATTATTTTGCCTT...	1.186e^-4	0.832	UPSTREAM CG5890 INTERGENIC
X	3072152	X_3072152_SNP [dm3] X_3178119_SNP [dm6]	T	C	1.188e^-4	0.832	INTRON dnc
3L	17908064	3L_17908064_SNP [dm3] 3L_17914964_SNP [dm6]	A	G	1.188e^-4	0.832	INTERGENIC
3L	5899376	3L_5899376_SNP [dm3] 3L_5906276_SNP [dm6]	T	G	1.194e^-4	0.832	SYNONYMOUS_CODING CG10486
3L	2324621	3L_2324621_SNP [dm3] 3L_2324621_SNP [dm6]	A	T	1.195e^-4	0.832	INTRON MsR1
2L	15787218	2L_15787218_SNP [dm3] 2L_15787218_SNP [dm6]	T	A	1.204e^-4	0.832	SYNONYMOUS_CODING CG18109
3L	10925044	3L_10925044_SNP [dm3] 3L_10931944_SNP [dm6]	T	G	1.206e^-4	0.832	INTERGENIC
3L	7330678	3L_7330678_SNP [dm3] 3L_7337578_SNP [dm6]	T	C	1.207e^-4	0.832	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24205346	3R_24205346_SNP [dm3] 3R_28379624_SNP [dm6]	A	T	1.209e^-4	0.832	INTERGENIC
3R	3868023	3R_3868023_SNP [dm3] 3R_8042301_SNP [dm6]	C	T	1.214e^-4	0.832	DOWNSTREAM CG43060 INTRON CG43060
3L	17908077	3L_17908077_SNP [dm3] 3L_17914977_SNP [dm6]	C	A	1.221e^-4	0.832	INTERGENIC
3R	9884312	3R_9884312_SNP [dm3] 3R_14058590_SNP [dm6]	T	C	1.221e^-4	0.832	INTRON foxo
2R	14769838	2R_14769838_SNP [dm3] 2R_18882333_SNP [dm6]	T	C	1.222e^-4	0.832	INTRON sano
3L	10690739	3L_10690739_SNP [dm3] 3L_10697639_SNP [dm6]	T	A	1.222e^-4	0.832	UPSTREAM NijA INTERGENIC
2L	10973418	2L_10973418_SNP [dm3] 2L_10973418_SNP [dm6]	C	A	1.224e^-4	0.832	DOWNSTREAM abo & 1 other INTERGENIC
X	12391756	X_12391756_SNP [dm3] X_12497723_SNP [dm6]	G	A	1.225e^-4	0.832	INTRON CG2556 EXON snoRNA:Me18S-G894
2L	3939669	2L_3939669_SNP [dm3] 2L_3939669_SNP [dm6]	C	A	1.228e^-4	0.832	INTRON fred
3L	14407637	3L_14407637_SNP [dm3] 3L_14414537_SNP [dm6]	T	A	1.233e^-4	0.832	INTRON bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7282989	3L_7282989_SNP [dm3] 3L_7289889_SNP [dm6]	A	T	1.233e^-4	0.832	INTRON unc-13-4A
2R	19599223	2R_19599223_SNP [dm3] 2R_23711700_SNP [dm6]	T	A	1.245e^-4	0.832	INTERGENIC
3L	7329550	3L_7329550_SNP [dm3] 3L_7336450_SNP [dm6]	G	A	1.254e^-4	0.832	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15642999	3R_15642999_SNP [dm3] 3R_19817277_SNP [dm6]	G	A	1.266e^-4	0.832	INTRON bnl	TF binding site BDTNP1_TFBS_twi
3R	11015110	3R_11015110_SNP [dm3] 3R_15189388_SNP [dm6]	C	A	1.276e^-4	0.832	NON_SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	992140	3L_992140_SNP [dm3] 3L_992140_SNP [dm6]	C	T	1.277e^-4	0.832	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3L	17908050	3L_17908050_SNP [dm3] 3L_17914950_SNP [dm6]	C	T	1.282e^-4	0.832	INTERGENIC
2R	17092769	2R_17092769_SNP [dm3] 2R_21205264_SNP [dm6]	T	C	1.284e^-4	0.832	SYNONYMOUS_CODING Glycogenin INTRON CG44245
3R	17800501	3R_17800501_DEL [dm3] 3R_21974779_DEL [dm6]	CG	C	1.285e^-4	0.832	INTRON Eip93F
3L	7329556	3L_7329556_SNP [dm3] 3L_7336456_SNP [dm6]	T	C	1.296e^-4	0.832	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5534674	3L_5534674_SNP [dm3] 3L_5541574_SNP [dm6]	T	G	1.298e^-4	0.832	INTRON CG10625
3L	13381400	3L_13381400_SNP [dm3] 3L_13388300_SNP [dm6]	A	C	1.305e^-4	0.832	UTR_3_PRIME Poc1 UPSTREAM CG10171
3R	14662759	3R_14662759_SNP [dm3] 3R_18837037_SNP [dm6]	G	A	1.306e^-4	0.832	INTRON CG18208
2L	14767929	2L_14767929_INS [dm3] 2L_14767929_INS [dm6]	T	TTTAT	1.313e^-4	0.832	DOWNSTREAM CG4701 INTERGENIC
2L	3322271	2L_3322271_SNP [dm3] 2L_3322271_SNP [dm6]	A	T	1.313e^-4	0.832	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4710349	3L_4710349_SNP [dm3] 3L_4710349_SNP [dm6]	A	G	1.319e^-4	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4710350	3L_4710350_DEL [dm3] 3L_4710350_DEL [dm6]	TAGAT	T	1.319e^-4	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4710363	3L_4710363_SNP [dm3] 3L_4710363_SNP [dm6]	G	A	1.319e^-4	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16012418	3L_16012418_SNP [dm3] 3L_16019318_SNP [dm6]	C	T	1.321e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14866140	2L_14866140_DEL [dm3] 2L_14866140_DEL [dm6]	TA	T	1.326e^-4	0.832	INTERGENIC
3L	1414405	3L_1414405_SNP [dm3] 3L_1414405_SNP [dm6]	C	T	1.327e^-4	0.832	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4751644	3L_4751644_INS [dm3] 3L_4751644_INS [dm6]	G	GATCCAGCGG	1.327e^-4	0.832	DOWNSTREAM CG12493 INTRON RhoGEF64C
3L	14079083	3L_14079083_SNP [dm3] 3L_14085983_SNP [dm6]	T	G	1.332e^-4	0.832	DOWNSTREAM CG8100 INTERGENIC
3L	10757578	3L_10757578_SNP [dm3] 3L_10764478_SNP [dm6]	C	T	1.350e^-4	0.832	INTERGENIC
3L	15886584	3L_15886584_SNP [dm3] 3L_15893484_SNP [dm6]	G	A	1.354e^-4	0.832	INTRON pHCl
3L	8646763	3L_8646763_SNP [dm3] 3L_8653663_SNP [dm6]	C	T	1.356e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12098951	X_12098951_SNP [dm3] X_12204918_SNP [dm6]	G	T	1.357e^-4	0.832	INTRON Ten-a
3L	4139328	3L_4139328_SNP [dm3] 3L_4139328_SNP [dm6]	T	C	1.360e^-4	0.832	UPSTREAM Rop INTRON Ras64B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	5393507	3R_5393507_SNP [dm3] 3R_9567785_SNP [dm6]	G	A	1.368e^-4	0.832	SYNONYMOUS_CODING CG16789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12769377	2R_12769377_SNP [dm3] 2R_16881872_SNP [dm6]	C	T	1.375e^-4	0.832	INTRON CG8910 & 1 other	TF binding site mE1_TFBS_inv
2L	2935970	2L_2935970_SNP [dm3] 2L_2935970_SNP [dm6]	G	T	1.376e^-4	0.832	INTRON lilli
2L	5891814	2L_5891814_SNP [dm3] 2L_5891814_SNP [dm6]	T	A	1.378e^-4	0.832	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5601901	3R_5601901_SNP [dm3] 3R_9776179_SNP [dm6]	G	T	1.385e^-4	0.832	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
3R	17618547	3R_17618547_SNP [dm3] 3R_21792825_SNP [dm6]	C	A	1.388e^-4	0.832	INTRON CASK	TF binding site mE1_TFBS_cad
3L	17905465	3L_17905465_SNP [dm3] 3L_17912365_SNP [dm6]	T	C	1.391e^-4	0.832	UTR_5_PRIME CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8307769	2R_8307769_SNP [dm3] 2R_12420264_SNP [dm6]	A	T	1.397e^-4	0.832	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
3L	4757923	3L_4757923_SNP [dm3] 3L_4757923_SNP [dm6]	T	C	1.412e^-4	0.832	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4757926	3L_4757926_SNP [dm3] 3L_4757926_SNP [dm6]	T	C	1.412e^-4	0.832	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	12088885	X_12088885_SNP [dm3] X_12194852_SNP [dm6]	T	C	1.418e^-4	0.832	INTRON Ten-a
3L	995141	3L_995141_SNP [dm3] 3L_995141_SNP [dm6]	C	G	1.420e^-4	0.832	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2L	4880075	2L_4880075_SNP [dm3] 2L_4880075_SNP [dm6]	T	A	1.422e^-4	0.832	INTRON Cf2
3L	17907668	3L_17907668_SNP [dm3] 3L_17914568_SNP [dm6]	T	A	1.426e^-4	0.832	INTERGENIC
2R	12314754	2R_12314754_SNP [dm3] 2R_16427249_SNP [dm6]	G	C	1.438e^-4	0.832	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9857685	2L_9857685_DEL [dm3] 2L_9857685_DEL [dm6]	AA	A	1.446e^-4	0.832	INTRON nAChRalpha6
2R	14307267	2R_14307267_SNP [dm3] 2R_18419762_SNP [dm6]	C	T	1.450e^-4	0.832	UTR_3_PRIME Dp1	TF binding site mE1_TFBS_cad
2R	16767291	2R_16767291_DEL [dm3] 2R_20879786_DEL [dm6]	AA	A	1.461e^-4	0.832	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
3R	9884092	3R_9884092_SNP [dm3] 3R_14058370_SNP [dm6]	G	T	1.461e^-4	0.832	INTRON foxo
3R	19459078	3R_19459078_SNP [dm3] 3R_23633356_SNP [dm6]	C	A	1.461e^-4	0.832	INTRON CG31145	TF binding site BDTNP1_TFBS_twi
2R	14307889	2R_14307889_SNP [dm3] 2R_18420384_SNP [dm6]	G	T	1.464e^-4	0.832	UTR_3_PRIME Dp1
2R	14308557	2R_14308557_SNP [dm3] 2R_18421052_SNP [dm6]	A	G	1.464e^-4	0.832	UTR_3_PRIME Dp1 UPSTREAM CG5174 DOWNSTREAM Dp1	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	14309023	2R_14309023_SNP [dm3] 2R_18421518_SNP [dm6]	C	G	1.464e^-4	0.832	UTR_5_PRIME CG5174 DOWNSTREAM Dp1	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	6663436	3L_6663436_SNP [dm3] 3L_6670336_SNP [dm6]	G	T	1.465e^-4	0.832	INTERGENIC
2R	18240112	2R_18240112_DEL [dm3] 2R_22352607_DEL [dm6]	GGG	A	1.468e^-4	0.832	INTRON Liprin-gamma
3L	7799176	3L_7799176_SNP [dm3] 3L_7806076_SNP [dm6]	T	C	1.469e^-4	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	5603438	3R_5603438_SNP [dm3] 3R_9777716_SNP [dm6]	G	A	1.477e^-4	0.832	SYNONYMOUS_CODING topi UPSTREAM RpS29 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12971653	3L_12971653_DEL [dm3] 3L_12978553_DEL [dm6]	AA	A	1.479e^-4	0.832	INTERGENIC
3L	18076083	3L_18076083_SNP [dm3] 3L_18082983_SNP [dm6]	A	G	1.481e^-4	0.832	INTRON CR43253	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9883840	3R_9883840_SNP [dm3] 3R_14058118_SNP [dm6]	T	A	1.490e^-4	0.832	INTRON foxo
3R	19538543	3R_19538543_SNP [dm3] 3R_23712821_SNP [dm6]	T	G	1.502e^-4	0.832	UTR_3_PRIME CG10300 & 1 other
3L	995871	3L_995871_SNP [dm3] 3L_995871_SNP [dm6]	C	G	1.504e^-4	0.832	DOWNSTREAM trio & 1 other INTERGENIC
X	16768263	X_16768263_SNP [dm3] X_16874230_SNP [dm6]	C	A	1.508e^-4	0.832	INTRON CG13003
2R	19607655	2R_19607655_SNP [dm3] 2R_23720132_SNP [dm6]	C	A	1.511e^-4	0.832	UPSTREAM CG18128 DOWNSTREAM CR45325 INTRON Sesn
3R	17070879	3R_17070879_INS [dm3] 3R_21245157_INS [dm6]	T	TGCA	1.513e^-4	0.832	CODON_INSERTION CG5892
3R	14093531	3R_14093531_SNP [dm3] 3R_18267809_SNP [dm6]	G	C	1.516e^-4	0.832	UTR_5_PRIME CG18599	TF binding site mE1_TFBS_run
2R	7719578	2R_7719578_SNP [dm3] 2R_11832073_SNP [dm6]	A	G	1.519e^-4	0.832	INTRON Sobp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13270068	X_13270068_SNP [dm3] X_13376035_SNP [dm6]	T	G	1.519e^-4	0.832	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2739684	2R_2739684_DEL [dm3] 2R_6852179_DEL [dm6]	TT	T	1.521e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9236508	2L_9236508_INS [dm3] 2L_9236508_INS [dm6]	A	AA	1.524e^-4	0.832	DOWNSTREAM tRNA:CR31885 INTRON tai
3L	9551695	3L_9551695_SNP [dm3] 3L_9558595_SNP [dm6]	T	C	1.526e^-4	0.832	INTRON CG42673
3L	23046746	3L_23046746_SNP [dm3] 3L_23053646_SNP [dm6]	A	T	1.527e^-4	0.832	INTERGENIC	transposable element FlyBase
3R	5727434	3R_5727434_DEL [dm3] 3R_9901712_DEL [dm6]	TGT	T	1.527e^-4	0.832	INTRON Glut4EF
3L	16725640	3L_16725640_DEL [dm3] 3L_16732540_DEL [dm6]	TTTCGAT	T	1.530e^-4	0.832	UPSTREAM CG9701 INTERGENIC
3L	7799054	3L_7799054_SNP [dm3] 3L_7805954_SNP [dm6]	A	G	1.548e^-4	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	14114323	3L_14114323_INS [dm3] 3L_14121223_INS [dm6]	T	TTTCAC	1.549e^-4	0.832	INTRON Sox21b
3L	8384729	3L_8384729_SNP [dm3] 3L_8391629_SNP [dm6]	C	A	1.550e^-4	0.832	SYNONYMOUS_CODING Jon66Ci DOWNSTREAM ImpE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5290050	X_5290050_SNP [dm3] X_5396017_SNP [dm6]	A	C	1.551e^-4	0.832	INTRON SK
2L	3406977	2L_3406977_SNP [dm3] 2L_3406977_SNP [dm6]	G	A	1.556e^-4	0.832	SYNONYMOUS_CODING pgant2
3R	11649876	3R_11649876_DEL [dm3] 3R_15824154_DEL [dm6]	GCAAG	G	1.571e^-4	0.832	UTR_3_PRIME rec DOWNSTREAM rec & 1 other
3L	23049699	3L_23049699_SNP [dm3] 3L_23056599_SNP [dm6]	G	A	1.577e^-4	0.832	INTERGENIC	transposable element FlyBase
3L	15710933	3L_15710933_SNP [dm3] 3L_15717833_SNP [dm6]	T	C	1.588e^-4	0.832	UTR_5_PRIME CG42570 DOWNSTREAM CG42571
2L	3322277	2L_3322277_SNP [dm3] 2L_3322277_SNP [dm6]	G	A	1.591e^-4	0.832	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15159634	2L_15159634_SNP [dm3] 2L_15159634_SNP [dm6]	G	C	1.594e^-4	0.832	EXON CR44771	TF binding site mE1_TFBS_cad
3L	848482	3L_848482_SNP [dm3] 3L_848482_SNP [dm6]	G	A	1.607e^-4	0.832	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7510067	2L_7510067_SNP [dm3] 2L_7510067_SNP [dm6]	A	T	1.610e^-4	0.832	INTRON RapGAP1
3L	11047405	3L_11047405_SNP [dm3] 3L_11054305_SNP [dm6]	C	A	1.611e^-4	0.832	UTR_5_PRIME CG7888
2R	19602197	2R_19602197_DEL [dm3] 2R_23714674_DEL [dm6]	TC	T	1.611e^-4	0.832	SPLICE_SITE_REGION Sesn UTR_5_PRIME Sesn INTRON Sesn
3L	17909073	3L_17909073_SNP [dm3] 3L_17915973_SNP [dm6]	A	T	1.615e^-4	0.832	INTERGENIC	transposable element FlyBase
2R	2121447	2R_2121447_SNP [dm3] 2R_6233942_SNP [dm6]	T	C	1.616e^-4	0.832	SYNONYMOUS_CODING bin3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5980847	X_5980847_SNP [dm3] X_6086814_SNP [dm6]	A	G	1.624e^-4	0.832	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11313467	2L_11313467_SNP [dm3] 2L_11313467_SNP [dm6]	C	G	1.628e^-4	0.832	INTERGENIC
3L	15884210	3L_15884210_SNP [dm3] 3L_15891110_SNP [dm6]	T	G	1.630e^-4	0.832	INTRON pHCl
2L	16557567	2L_16557567_SNP [dm3] 2L_16557567_SNP [dm6]	T	A	1.630e^-4	0.832	INTRON CG42389
3R	9537611	3R_9537611_SNP [dm3] 3R_13711889_SNP [dm6]	T	C	1.631e^-4	0.832	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15696990	3R_15696990_SNP [dm3] 3R_19871268_SNP [dm6]	A	G	1.637e^-4	0.832	INTRON CG4562	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16720890	3L_16720890_SNP [dm3] 3L_16727790_SNP [dm6]	A	T	1.637e^-4	0.832	SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10470996	3L_10470996_SNP [dm3] 3L_10477896_SNP [dm6]	G	T	1.639e^-4	0.832	INTERGENIC
2R	10218393	2R_10218393_SNP [dm3] 2R_14330888_SNP [dm6]	A	C	1.645e^-4	0.832	INTRON Shroom
2L	3574099	2L_3574099_SNP [dm3] 2L_3574099_SNP [dm6]	A	G	1.654e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	4751652	3L_4751652_SNP [dm3] 3L_4751652_SNP [dm6]	G	A	1.675e^-4	0.832	DOWNSTREAM CG12493 INTRON RhoGEF64C
X	16354339	X_16354339_SNP [dm3] X_16460306_SNP [dm6]	A	G	1.698e^-4	0.832	UTR_3_PRIME para
2R	3698055	2R_3698055_SNP [dm3] 2R_7810550_SNP [dm6]	A	G	1.700e^-4	0.832	SYNONYMOUS_CODING CG1550 DOWNSTREAM sax	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10244313	3L_10244313_SNP [dm3] 3L_10251213_SNP [dm6]	C	T	1.702e^-4	0.832	INTERGENIC
3R	17070868	3R_17070868_SNP [dm3] 3R_21245146_SNP [dm6]	C	T	1.710e^-4	0.832	SYNONYMOUS_CODING CG5892
3L	992143	3L_992143_SNP [dm3] 3L_992143_SNP [dm6]	C	G	1.728e^-4	0.832	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3R	11533149	3R_11533149_SNP [dm3] 3R_15707427_SNP [dm6]	T	C	1.733e^-4	0.832	SYNONYMOUS_CODING CG5404
3L	17902602	3L_17902602_SNP [dm3] 3L_17909502_SNP [dm6]	T	A	1.733e^-4	0.832	UTR_3_PRIME CG14353 & 1 other
3L	18259131	3L_18259131_SNP [dm3] 3L_18266031_SNP [dm6]	A	G	1.734e^-4	0.832	INTERGENIC
3R	22279208	3R_22279208_SNP [dm3] 3R_26453486_SNP [dm6]	T	A	1.735e^-4	0.832	INTRON CG5447
3L	15051446	3L_15051446_SNP [dm3] 3L_15058346_SNP [dm6]	T	G	1.740e^-4	0.832	INTRON Sytbeta
3R	10253271	3R_10253271_SNP [dm3] 3R_14427549_SNP [dm6]	C	T	1.742e^-4	0.832	NON_SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21289244	3R_21289244_SNP [dm3] 3R_25463522_SNP [dm6]	G	T	1.746e^-4	0.832	INTRON Fur1
3L	7799050	3L_7799050_SNP [dm3] 3L_7805950_SNP [dm6]	G	C	1.749e^-4	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	21684079	3R_21684079_SNP [dm3] 3R_25858357_SNP [dm6]	C	T	1.757e^-4	0.832	INTRON CG5890
3L	23140728	3L_23140728_SNP [dm3] 3L_23147628_SNP [dm6]	A	C	1.763e^-4	0.832	DOWNSTREAM CG32350 INTERGENIC
3R	3859033	3R_3859033_SNP [dm3] 3R_8033311_SNP [dm6]	C	A	1.771e^-4	0.832	UTR_5_PRIME unc-45 UPSTREAM CG11035	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9246538	3L_9246538_SNP [dm3] 3L_9253438_SNP [dm6]	A	G	1.772e^-4	0.832	INTRON GluRIB
2L	8150892	2L_8150892_SNP [dm3] 2L_8150892_SNP [dm6]	C	A	1.774e^-4	0.832	INTRON CG8552 & 1 other
3R	16231896	3R_16231896_SNP [dm3] 3R_20406174_SNP [dm6]	T	C	1.776e^-4	0.832	DOWNSTREAM CG4335 INTRON Gfrl
3R	22446117	3R_22446117_SNP [dm3] 3R_26620395_SNP [dm6]	C	A	1.782e^-4	0.832	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4757942	3L_4757942_SNP [dm3] 3L_4757942_SNP [dm6]	G	A	1.789e^-4	0.832	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4758014	3L_4758014_SNP [dm3] 3L_4758014_SNP [dm6]	C	G	1.789e^-4	0.832	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15363302	3R_15363302_SNP [dm3] 3R_19537580_SNP [dm6]	G	T	1.792e^-4	0.832	INTRON Dys
3R	5727398	3R_5727398_SNP [dm3] 3R_9901676_SNP [dm6]	T	C	1.794e^-4	0.832	INTRON Glut4EF
3R	10253871	3R_10253871_SNP [dm3] 3R_14428149_SNP [dm6]	A	C	1.795e^-4	0.832	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16415760	3L_16415760_SNP [dm3] 3L_16422660_SNP [dm6]	A	G	1.797e^-4	0.832	DOWNSTREAM dsx-c73A INTRON CG33158
3R	10249528	3R_10249528_SNP [dm3] 3R_14423806_SNP [dm6]	A	G	1.802e^-4	0.832	INTRON cv-c
3L	14079086	3L_14079086_SNP [dm3] 3L_14085986_SNP [dm6]	A	C	1.805e^-4	0.832	DOWNSTREAM CG8100 INTERGENIC
2L	3942276	2L_3942276_SNP [dm3] 2L_3942276_SNP [dm6]	T	A	1.807e^-4	0.832	INTRON fred
3R	16231427	3R_16231427_SNP [dm3] 3R_20405705_SNP [dm6]	G	A	1.817e^-4	0.832	DOWNSTREAM CG4335 INTRON Gfrl
2L	5510419	2L_5510419_SNP [dm3] 2L_5510419_SNP [dm6]	G	A	1.825e^-4	0.832	INTERGENIC
2L	11589781	2L_11589781_SNP [dm3] 2L_11589781_SNP [dm6]	C	T	1.826e^-4	0.832	DOWNSTREAM CR44496 INTRON kek2
3L	990424	3L_990424_SNP [dm3] 3L_990424_SNP [dm6]	C	T	1.829e^-4	0.832	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15619327	2L_15619327_DEL [dm3] 2L_15619327_DEL [dm6]	ATAAAGGTTACT...	C	1.830e^-4	0.832	INTERGENIC
3L	6891042	3L_6891042_SNP [dm3] 3L_6897942_SNP [dm6]	C	G	1.835e^-4	0.832	INTERGENIC
2L	19968477	2L_19968477_SNP [dm3] 2L_19968477_SNP [dm6]	A	T	1.840e^-4	0.832	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
2L	3574053	2L_3574053_SNP [dm3] 2L_3574053_SNP [dm6]	A	G	1.855e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	12856352	3L_12856352_SNP [dm3] 3L_12863252_SNP [dm6]	A	G	1.858e^-4	0.832	UPSTREAM CG10943 INTERGENIC
3L	3986847	3L_3986847_SNP [dm3] 3L_3986847_SNP [dm6]	T	C	1.862e^-4	0.832	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	3856749	3R_3856749_SNP [dm3] 3R_8031027_SNP [dm6]	C	T	1.869e^-4	0.832	UPSTREAM CG2747 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
3L	23081885	3L_23081885_SNP [dm3] 3L_23088785_SNP [dm6]	C	A	1.871e^-4	0.832	INTERGENIC	transposable element FlyBase
2L	2014369	2L_2014369_SNP [dm3] 2L_2014369_SNP [dm6]	T	G	1.880e^-4	0.832	INTRON CG4238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	9821577	X_9821577_SNP [dm3] X_9927544_SNP [dm6]	C	A	1.880e^-4	0.832	DOWNSTREAM Idgf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8111062	X_8111062_SNP [dm3] X_8217029_SNP [dm6]	C	A	1.883e^-4	0.832	UTR_5_PRIME sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15597319	2L_15597319_SNP [dm3] 2L_15597319_SNP [dm6]	G	T	1.884e^-4	0.832	INTERGENIC
3L	848479	3L_848479_SNP [dm3] 3L_848479_SNP [dm6]	G	C	1.887e^-4	0.832	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15881100	3L_15881100_SNP [dm3] 3L_15888000_SNP [dm6]	A	G	1.897e^-4	0.832	INTRON pHCl
3L	3137763	3L_3137763_SNP [dm3] 3L_3137763_SNP [dm6]	A	T	1.905e^-4	0.832	INTRON CG11537
2L	373028	2L_373028_SNP [dm3] 2L_373028_SNP [dm6]	A	G	1.911e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3700007	2R_3700007_SNP [dm3] 2R_7812502_SNP [dm6]	C	T	1.911e^-4	0.832	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	15292625	X_15292625_SNP [dm3] X_15398592_SNP [dm6]	A	G	1.912e^-4	0.832	SPLICE_SITE_REGION Cngl INTRON Cngl
3L	7282718	3L_7282718_SNP [dm3] 3L_7289618_SNP [dm6]	A	C	1.917e^-4	0.832	INTRON unc-13-4A
2L	14733332	2L_14733332_SNP [dm3] 2L_14733332_SNP [dm6]	G	A	1.924e^-4	0.832	UPSTREAM CR44857 INTERGENIC
3L	12400600	3L_12400600_SNP [dm3] 3L_12407500_SNP [dm6]	G	T	1.925e^-4	0.832	INTRON CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24205289	3R_24205289_SNP [dm3] 3R_28379567_SNP [dm6]	C	A	1.935e^-4	0.832	INTERGENIC
3L	18035817	3L_18035817_SNP [dm3] 3L_18042717_SNP [dm6]	T	C	1.938e^-4	0.832	UPSTREAM CG42393 DOWNSTREAM CG32192 INTRON Eip75B
X	15292586	X_15292586_SNP [dm3] X_15398553_SNP [dm6]	A	G	1.942e^-4	0.832	SYNONYMOUS_CODING Cngl
2L	9338417	2L_9338417_SNP [dm3] 2L_9338417_SNP [dm6]	T	C	1.942e^-4	0.832	INTRON Eaat1
3R	6280209	3R_6280209_SNP [dm3] 3R_10454487_SNP [dm6]	A	G	1.951e^-4	0.832	INTERGENIC
3L	14210678	3L_14210678_INS [dm3] 3L_14217578_INS [dm6]	T	TT	1.952e^-4	0.832	UPSTREAM CG7768 INTRON nuf
3R	23479106	3R_23479106_SNP [dm3] 3R_27653384_SNP [dm6]	T	A	1.952e^-4	0.832	DOWNSTREAM RpS10a INTRON tau
2L	8262607	2L_8262607_SNP [dm3] 2L_8262607_SNP [dm6]	A	G	1.953e^-4	0.832	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
3R	3983015	3R_3983015_SNP [dm3] 3R_8157293_SNP [dm6]	G	A	1.960e^-4	0.832	INTRON grn	TF binding site mE1_TFBS_Kr
3L	8699375	3L_8699375_SNP [dm3] 3L_8706275_SNP [dm6]	C	T	1.965e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19402895	2R_19402895_SNP [dm3] 2R_23515372_SNP [dm6]	G	A	1.971e^-4	0.832	INTERGENIC
2R	16103672	2R_16103672_SNP [dm3] 2R_20216167_SNP [dm6]	T	C	1.972e^-4	0.832	INTERGENIC
2R	16103673	2R_16103673_SNP [dm3] 2R_20216168_SNP [dm6]	C	T	1.972e^-4	0.832	INTERGENIC
3L	909465	3L_909465_SNP [dm3] 3L_909465_SNP [dm6]	T	C	1.983e^-4	0.832	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14121720	3L_14121720_SNP [dm3] 3L_14128620_SNP [dm6]	C	A	1.987e^-4	0.832	INTRON Sox21b
3L	10491723	3L_10491723_SNP [dm3] 3L_10498623_SNP [dm6]	G	A	1.993e^-4	0.832	INTRON A2bp1
3R	9882385	3R_9882385_DEL [dm3] 3R_14056663_DEL [dm6]	ATAG	T	1.994e^-4	0.832	UPSTREAM foxo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
4	257125	4_257125_SNP [dm3] 4_236499_SNP [dm6]	C	T	1.997e^-4	0.832	INTRON CG1674	TF binding site mE1_TFBS_kn
3R	9882590	3R_9882590_SNP [dm3] 3R_14056868_SNP [dm6]	G	C	2.004e^-4	0.832	UPSTREAM foxo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	12992010	3R_12992010_SNP [dm3] 3R_17166288_SNP [dm6]	A	T	2.007e^-4	0.832	INTRON Mur89F
X	6815446	X_6815446_SNP [dm3] X_6921413_SNP [dm6]	C	T	2.008e^-4	0.832	INTRON CG14431
2R	20217580	2R_20217580_SNP [dm3] 2R_24330057_SNP [dm6]	T	A	2.015e^-4	0.832	EXON CR44810	TF binding site mE1_TFBS_Trl
3L	9006388	3L_9006388_SNP [dm3] 3L_9013288_SNP [dm6]	G	C	2.015e^-4	0.832	NON_SYNONYMOUS_CODING Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	15884147	3L_15884147_SNP [dm3] 3L_15891047_SNP [dm6]	A	G	2.021e^-4	0.832	INTRON pHCl
3R	9637894	3R_9637894_SNP [dm3] 3R_13812172_SNP [dm6]	G	T	2.025e^-4	0.832	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17158081	2R_17158081_SNP [dm3] 2R_21270576_SNP [dm6]	A	T	2.034e^-4	0.832	INTRON Rgk3
3L	9007740	3L_9007740_SNP [dm3] 3L_9014640_SNP [dm6]	G	A	2.038e^-4	0.832	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6487577	2R_6487577_SNP [dm3] 2R_10600072_SNP [dm6]	T	A	2.039e^-4	0.832	INTRON psq
2R	18500302	2R_18500302_SNP [dm3] 2R_22612797_SNP [dm6]	G	A	2.041e^-4	0.832	SPLICE_SITE_REGION CG4329 INTRON CG4329
X	4521824	X_4521824_SNP [dm3] X_4627791_SNP [dm6]	G	A	2.041e^-4	0.832	DOWNSTREAM peb INTRON CG12184
3L	14695826	3L_14695826_SNP [dm3] 3L_14702726_SNP [dm6]	G	A	2.045e^-4	0.832	INTRON ome
2L	13313475	2L_13313475_SNP [dm3] 2L_13313475_SNP [dm6]	T	C	2.051e^-4	0.832	INTRON CG43778
3L	9502181	3L_9502181_INS [dm3] 3L_9509081_INS [dm6]	C	CC	2.053e^-4	0.832	DOWNSTREAM RpS9 INTRON CG3408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10694370	3R_10694370_SNP [dm3] 3R_14868648_SNP [dm6]	A	G	2.055e^-4	0.832	INTRON btsz
3L	15937134	3L_15937134_SNP [dm3] 3L_15944034_SNP [dm6]	T	G	2.061e^-4	0.832	INTRON Pka-C3
3L	7330450	3L_7330450_SNP [dm3] 3L_7337350_SNP [dm6]	G	A	2.064e^-4	0.832	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	843290	3L_843290_SNP [dm3] 3L_843290_SNP [dm6]	G	A	2.071e^-4	0.832	UPSTREAM CG13889 INTRON Gr61a
3L	6286985	3L_6286985_SNP [dm3] 3L_6293885_SNP [dm6]	G	T	2.078e^-4	0.832	INTERGENIC
3L	4516597	3L_4516597_SNP [dm3] 3L_4516597_SNP [dm6]	G	C	2.078e^-4	0.832	INTRON Tie	TF binding site mE1_TFBS_inv
2L	6494196	2L_6494196_SNP [dm3] 2L_6494196_SNP [dm6]	G	A	2.095e^-4	0.832	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14210635	3L_14210635_DEL [dm3] 3L_14217535_DEL [dm6]	GTTCTCGGTTACTAG...	G	2.096e^-4	0.832	UPSTREAM CG7768 INTRON nuf
3L	5773475	3L_5773475_SNP [dm3] 3L_5780375_SNP [dm6]	A	C	2.101e^-4	0.832	UTR_5_PRIME PGRP-LD UPSTREAM Myt1 INTRON PGRP-LD & 1 other EXON CR45026	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5949730	2L_5949730_SNP [dm3] 2L_5949730_SNP [dm6]	G	T	2.110e^-4	0.832	DOWNSTREAM Gpdh INTRON CG9044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	6897802	2L_6897802_SNP [dm3] 2L_6897802_SNP [dm6]	G	A	2.123e^-4	0.832	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	25030243	3R_25030243_SNP [dm3] 3R_29204521_SNP [dm6]	C	G	2.131e^-4	0.832	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10253807	3R_10253807_SNP [dm3] 3R_14428085_SNP [dm6]	A	T	2.139e^-4	0.832	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16782277	2L_16782277_SNP [dm3] 2L_16782277_SNP [dm6]	A	G	2.144e^-4	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	5771235	3L_5771235_SNP [dm3] 3L_5778135_SNP [dm6]	T	C	2.155e^-4	0.832	NON_SYNONYMOUS_CODING Myt1 UPSTREAM vito
2R	3697480	2R_3697480_SNP [dm3] 2R_7809975_SNP [dm6]	T	A	2.156e^-4	0.832	UTR_3_PRIME sax DOWNSTREAM CG1550	TF binding site mE1_TFBS_cad
3R	8400763	3R_8400763_SNP [dm3] 3R_12575041_SNP [dm6]	C	G	2.157e^-4	0.832	INTRON Octbeta2R
3R	14094271	3R_14094271_SNP [dm3] 3R_18268549_SNP [dm6]	A	G	2.159e^-4	0.832	INTRON CG18599
2R	3650622	2R_3650622_SNP [dm3] 2R_7763117_SNP [dm6]	G	A	2.170e^-4	0.832	INTRON CG30497 & 1 other
3R	2733673	3R_2733673_SNP [dm3] 3R_6907951_SNP [dm6]	G	C	2.184e^-4	0.832	UTR_3_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	749542	2L_749542_SNP [dm3] 2L_749542_SNP [dm6]	C	A	2.202e^-4	0.832	UPSTREAM GABA-B-R3 INTERGENIC
3L	16721744	3L_16721744_SNP [dm3] 3L_16728644_SNP [dm6]	G	C	2.202e^-4	0.832	SYNONYMOUS_CODING Dbp73D UPSTREAM PGRP-SB1
X	6323061	X_6323061_DEL [dm3] X_6429028_DEL [dm6]	AAA	G	2.206e^-4	0.832	INTRON CG42340
2L	8262442	2L_8262442_MNP [dm3] 2L_8262442_MNP [dm6]	TTAT	GGGG	2.207e^-4	0.832	INTRON Btk29A
3L	5774065	3L_5774065_SNP [dm3] 3L_5780965_SNP [dm6]	C	T	2.210e^-4	0.832	SYNONYMOUS_CODING Pmi UTR_5_PRIME PGRP-LD UPSTREAM PGRP-LD & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4880052	2L_4880052_DEL [dm3] 2L_4880052_DEL [dm6]	GGTACTGATTGATCG...	G	2.215e^-4	0.832	INTRON Cf2
2L	2084489	2L_2084489_SNP [dm3] 2L_2084489_SNP [dm6]	C	G	2.217e^-4	0.832	DOWNSTREAM CR44055 INTRON dpr3
2L	2084510	2L_2084510_SNP [dm3] 2L_2084510_SNP [dm6]	A	T	2.217e^-4	0.832	DOWNSTREAM CR44055 INTRON dpr3
X	5449728	X_5449728_SNP [dm3] X_5555695_SNP [dm6]	C	A	2.220e^-4	0.832	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
3L	10937205	3L_10937205_SNP [dm3] 3L_10944105_SNP [dm6]	T	A	2.221e^-4	0.832	UPSTREAM CG34050 INTERGENIC
3R	5942189	3R_5942189_SNP [dm3] 3R_10116467_SNP [dm6]	C	G	2.225e^-4	0.832	INTRON CG3940
3L	992127	3L_992127_SNP [dm3] 3L_992127_SNP [dm6]	C	T	2.226e^-4	0.832	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2L	13391524	2L_13391524_SNP [dm3] 2L_13391524_SNP [dm6]	G	T	2.232e^-4	0.832	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12285953	2L_12285953_SNP [dm3] 2L_12285953_SNP [dm6]	G	T	2.238e^-4	0.832	INTRON aret
3L	23083484	3L_23083484_SNP [dm3] 3L_23090384_SNP [dm6]	G	A	2.240e^-4	0.832	INTERGENIC	transposable element FlyBase
3R	17801012	3R_17801012_SNP [dm3] 3R_21975290_SNP [dm6]	T	A	2.241e^-4	0.832	INTRON Eip93F
3L	23081955	3L_23081955_SNP [dm3] 3L_23088855_SNP [dm6]	G	A	2.253e^-4	0.832	INTERGENIC	transposable element FlyBase
2L	12244994	2L_12244994_SNP [dm3] 2L_12244994_SNP [dm6]	T	G	2.254e^-4	0.832	INTRON aret
2L	10100480	2L_10100480_SNP [dm3] 2L_10100480_SNP [dm6]	A	G	2.254e^-4	0.832	INTRON CG34109 & 1 other
X	6323133	X_6323133_SNP [dm3] X_6429100_SNP [dm6]	A	C	2.261e^-4	0.832	INTRON CG42340
3L	11224761	3L_11224761_SNP [dm3] 3L_11231661_SNP [dm6]	C	T	2.264e^-4	0.832	UPSTREAM CR45405 DOWNSTREAM CG42671 INTERGENIC
2L	3388542	2L_3388542_SNP [dm3] 2L_3388542_SNP [dm6]	C	A	2.268e^-4	0.832	UPSTREAM Sfp23F & 2 others INTERGENIC
3R	19948582	3R_19948582_SNP [dm3] 3R_24122860_SNP [dm6]	T	A	2.273e^-4	0.832	INTRON Rootletin	TF binding site mE1_TFBS_cad
3R	19424064	3R_19424064_SNP [dm3] 3R_23598342_SNP [dm6]	G	A	2.273e^-4	0.832	INTRON CG10183
2R	15144577	2R_15144577_SNP [dm3] 2R_19257072_SNP [dm6]	G	A	2.274e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	22501943	3L_22501943_DEL [dm3] 3L_22508843_DEL [dm6]	AGGGT	G	2.276e^-4	0.832	INTERGENIC
X	6323085	X_6323085_SNP [dm3] X_6429052_SNP [dm6]	C	G	2.281e^-4	0.832	INTRON CG42340
3L	14372390	3L_14372390_SNP [dm3] 3L_14379290_SNP [dm6]	T	A	2.293e^-4	0.832	INTERGENIC
3R	15696996	3R_15696996_SNP [dm3] 3R_19871274_SNP [dm6]	A	G	2.294e^-4	0.832	INTRON CG4562	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16782267	2L_16782267_SNP [dm3] 2L_16782267_SNP [dm6]	C	A	2.296e^-4	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	8520569	3L_8520569_SNP [dm3] 3L_8527469_SNP [dm6]	T	C	2.297e^-4	0.832	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12663205	3L_12663205_SNP [dm3] 3L_12670105_SNP [dm6]	G	C	2.301e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9827043	3R_9827043_SNP [dm3] 3R_14001321_SNP [dm6]	C	T	2.302e^-4	0.832	INTRON rdx	TF binding site mE1_TFBS_cad
3R	23297480	3R_23297480_SNP [dm3] 3R_27471758_SNP [dm6]	C	G	2.303e^-4	0.832	INTERGENIC
3L	4377263	3L_4377263_SNP [dm3] 3L_4377263_SNP [dm6]	A	T	2.315e^-4	0.832	DOWNSTREAM CR44360 INTRON DopEcR
3R	5386569	3R_5386569_SNP [dm3] 3R_9560847_SNP [dm6]	G	T	2.321e^-4	0.832	DOWNSTREAM CG9393 INTRON MBD-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	10973397	2L_10973397_SNP [dm3] 2L_10973397_SNP [dm6]	T	C	2.322e^-4	0.832	UTR_3_PRIME CG16743 DOWNSTREAM abo & 1 other
2L	13507046	2L_13507046_INS [dm3] 2L_13507046_INS [dm6]	A	ATA	2.331e^-4	0.832	INTRON B4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14309253	2R_14309253_SNP [dm3] 2R_18421748_SNP [dm6]	G	A	2.340e^-4	0.832	DOWNSTREAM Dp1 INTRON CG5174	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	994266	3L_994266_SNP [dm3] 3L_994266_SNP [dm6]	G	C	2.348e^-4	0.832	DOWNSTREAM Glut1 INTRON CG12038	TF binding site mE1_TFBS_cad
2L	7484924	2L_7484924_SNP [dm3] 2L_7484924_SNP [dm6]	G	C	2.349e^-4	0.832	INTRON Ziz
3L	23074739	3L_23074739_SNP [dm3] 3L_23081639_SNP [dm6]	A	T	2.358e^-4	0.832	INTERGENIC
2L	14164457	2L_14164457_SNP [dm3] 2L_14164457_SNP [dm6]	T	C	2.363e^-4	0.832	SYNONYMOUS_CODING CG43333
2L	16228564	2L_16228564_SNP [dm3] 2L_16228564_SNP [dm6]	T	A	2.364e^-4	0.832	INTERGENIC
3L	17713204	3L_17713204_SNP [dm3] 3L_17720104_SNP [dm6]	G	T	2.367e^-4	0.832	UPSTREAM CheB74a INTRON Ccn	TF binding site mE1_TFBS_kn
2L	6700388	2L_6700388_SNP [dm3] 2L_6700388_SNP [dm6]	C	T	2.371e^-4	0.832	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	17116081	2R_17116081_SNP [dm3] 2R_21228576_SNP [dm6]	G	A	2.376e^-4	0.832	INTRON ASPP
2R	19606910	2R_19606910_SNP [dm3] 2R_23719387_SNP [dm6]	A	T	2.388e^-4	0.832	SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14119558	3L_14119558_SNP [dm3] 3L_14126458_SNP [dm6]	T	C	2.392e^-4	0.832	INTRON Sox21b
2R	16418053	2R_16418053_SNP [dm3] 2R_20530548_SNP [dm6]	G	T	2.397e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4035212	3R_4035212_SNP [dm3] 3R_8209490_SNP [dm6]	G	A	2.399e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	992142	3L_992142_SNP [dm3] 3L_992142_SNP [dm6]	G	T	2.400e^-4	0.832	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2L	1136937	2L_1136937_SNP [dm3] 2L_1136937_SNP [dm6]	A	G	2.411e^-4	0.832	INTRON CG4577	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16951860	3L_16951860_SNP [dm3] 3L_16958760_SNP [dm6]	G	A	2.416e^-4	0.832	INTRON Nc73EF
2L	19837070	2L_19837070_DEL [dm3] 2L_19837070_DEL [dm6]	GT	G	2.426e^-4	0.832	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10218404	2R_10218404_SNP [dm3] 2R_14330899_SNP [dm6]	A	T	2.431e^-4	0.832	INTRON Shroom
2R	3346085	2R_3346085_SNP [dm3] 2R_7458580_SNP [dm6]	A	G	2.437e^-4	0.832	INTRON Inos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4700429	3L_4700429_SNP [dm3] 3L_4700429_SNP [dm6]	A	G	2.438e^-4	0.832	INTRON RhoGEF64C
3L	9013509	3L_9013509_SNP [dm3] 3L_9020409_SNP [dm6]	T	C	2.439e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	8992501	3L_8992501_SNP [dm3] 3L_8999401_SNP [dm6]	T	G	2.439e^-4	0.832	SYNONYMOUS_CODING CG5087	TF binding site mE1_TFBS_sens
3L	10490824	3L_10490824_SNP [dm3] 3L_10497724_SNP [dm6]	G	T	2.451e^-4	0.832	INTRON A2bp1
2L	20125093	2L_20125093_SNP [dm3] 2L_20125093_SNP [dm6]	G	A	2.452e^-4	0.832	INTERGENIC
3L	16719449	3L_16719449_DEL [dm3] 3L_16726349_DEL [dm6]	AAATA	A	2.453e^-4	0.832	UPSTREAM PGRP-SB2 & 1 other DOWNSTREAM CG13031 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5949732	2L_5949732_SNP [dm3] 2L_5949732_SNP [dm6]	G	C	2.453e^-4	0.832	DOWNSTREAM Gpdh INTRON CG9044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	10078309	3R_10078309_INS [dm3] 3R_14252587_INS [dm6]	T	TCCACTCCACTGCACTGTAC...	2.455e^-4	0.832	INTRON Aats-met
3L	11333252	3L_11333252_SNP [dm3] 3L_11340152_SNP [dm6]	C	T	2.466e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14372394	3L_14372394_SNP [dm3] 3L_14379294_SNP [dm6]	C	T	2.471e^-4	0.832	INTERGENIC
2L	14865075	2L_14865075_SNP [dm3] 2L_14865075_SNP [dm6]	T	C	2.477e^-4	0.832	INTERGENIC
2L	2503516	2L_2503516_SNP [dm3] 2L_2503516_SNP [dm6]	C	A	2.478e^-4	0.832	INTERGENIC
3L	14977503	3L_14977503_SNP [dm3] 3L_14984403_SNP [dm6]	G	A	2.488e^-4	0.832	SYNONYMOUS_CODING CG5114 UPSTREAM mnd
3L	23115622	3L_23115622_SNP [dm3] 3L_23122522_SNP [dm6]	T	C	2.496e^-4	0.832	INTERGENIC	transposable element FlyBase
3R	24493006	3R_24493006_SNP [dm3] 3R_28667284_SNP [dm6]	C	A	2.498e^-4	0.832	INTERGENIC
3L	17902606	3L_17902606_SNP [dm3] 3L_17909506_SNP [dm6]	T	G	2.517e^-4	0.832	UTR_3_PRIME CG14353 & 1 other
3L	17902608	3L_17902608_SNP [dm3] 3L_17909508_SNP [dm6]	A	T	2.517e^-4	0.832	UTR_3_PRIME CG14353 & 1 other
2R	19599313	2R_19599313_SNP [dm3] 2R_23711790_SNP [dm6]	A	G	2.523e^-4	0.832	INTERGENIC
2R	13574005	2R_13574005_SNP [dm3] 2R_17686500_SNP [dm6]	C	G	2.524e^-4	0.832	UPSTREAM HPS4 DOWNSTREAM CG42561 & 1 other INTRON HPS4
3R	10428647	3R_10428647_SNP [dm3] 3R_14602925_SNP [dm6]	T	C	2.543e^-4	0.832	UPSTREAM stumps INTRON stumps
2L	3938330	2L_3938330_SNP [dm3] 2L_3938330_SNP [dm6]	T	A	2.549e^-4	0.832	INTRON fred
2R	11723243	2R_11723243_SNP [dm3] 2R_15835738_SNP [dm6]	T	A	2.551e^-4	0.832	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	12853447	3L_12853447_SNP [dm3] 3L_12860347_SNP [dm6]	G	A	2.558e^-4	0.832	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
2R	16020141	2R_16020141_SNP [dm3] 2R_20132636_SNP [dm6]	C	T	2.563e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5290043	X_5290043_SNP [dm3] X_5396010_SNP [dm6]	T	C	2.575e^-4	0.832	INTRON SK
3R	10183714	3R_10183714_SNP [dm3] 3R_14357992_SNP [dm6]	C	T	2.577e^-4	0.832	DOWNSTREAM CG31320 INTRON NK7.1
3R	14168715	3R_14168715_SNP [dm3] 3R_18342993_SNP [dm6]	T	C	2.578e^-4	0.832	INTRON CG15803
2L	3388543	2L_3388543_SNP [dm3] 2L_3388543_SNP [dm6]	C	T	2.579e^-4	0.832	UPSTREAM Sfp23F & 2 others INTERGENIC
X	5405158	X_5405158_SNP [dm3] X_5511125_SNP [dm6]	T	C	2.588e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19384110	3L_19384110_SNP [dm3] 3L_19391010_SNP [dm6]	C	T	2.588e^-4	0.832	DOWNSTREAM ms_3_76Ba INTRON CG32206	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2R	9072796	2R_9072796_SNP [dm3] 2R_13185291_SNP [dm6]	T	C	2.593e^-4	0.832	UPSTREAM CG17724 DOWNSTREAM Kdm4B INTRON CG17724 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18019897	3R_18019897_SNP [dm3] 3R_22194175_SNP [dm6]	G	C	2.597e^-4	0.832	DOWNSTREAM CR45224 INTRON SKIP	TF binding site mE1_TFBS_cad
3R	20706983	3R_20706983_SNP [dm3] 3R_24881261_SNP [dm6]	G	A	2.601e^-4	0.832	UTR_3_PRIME CG11089 DOWNSTREAM CG31121
2R	4469539	2R_4469539_SNP [dm3] 2R_8582034_SNP [dm6]	A	C	2.601e^-4	0.832	NON_SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9330058	2R_9330058_SNP [dm3] 2R_13442553_SNP [dm6]	C	G	2.608e^-4	0.832	DOWNSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_cad
2R	17662332	2R_17662332_SNP [dm3] 2R_21774827_SNP [dm6]	G	A	2.609e^-4	0.832	UTR_3_PRIME CG4021
2R	18410574	2R_18410574_SNP [dm3] 2R_22523069_SNP [dm6]	C	G	2.612e^-4	0.832	INTRON px
3R	20840478	3R_20840478_SNP [dm3] 3R_25014756_SNP [dm6]	G	A	2.613e^-4	0.832	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10973384	2L_10973384_SNP [dm3] 2L_10973384_SNP [dm6]	G	C	2.621e^-4	0.832	UTR_3_PRIME CG16743 DOWNSTREAM abo & 1 other
3L	995867	3L_995867_SNP [dm3] 3L_995867_SNP [dm6]	G	A	2.626e^-4	0.832	DOWNSTREAM trio & 1 other INTERGENIC
3L	13559486	3L_13559486_SNP [dm3] 3L_13566386_SNP [dm6]	C	T	2.626e^-4	0.832	INTRON bru-3
3R	25358644	3R_25358644_SNP [dm3] 3R_29532922_SNP [dm6]	A	G	2.632e^-4	0.832	INTERGENIC
X	15068920	X_15068920_SNP [dm3] X_15174887_SNP [dm6]	C	T	2.640e^-4	0.832	UPSTREAM CG43737 INTERGENIC
2L	10521817	2L_10521817_SNP [dm3] 2L_10521817_SNP [dm6]	A	T	2.651e^-4	0.832	INTERGENIC
2L	9396746	2L_9396746_INS [dm3] 2L_9396746_INS [dm6]	C	CC	2.653e^-4	0.832	DOWNSTREAM CG4438 INTRON Shawl
3L	991991	3L_991991_SNP [dm3] 3L_991991_SNP [dm6]	A	G	2.665e^-4	0.832	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2L	6020191	2L_6020191_SNP [dm3] 2L_6020191_SNP [dm6]	A	G	2.671e^-4	0.832	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2671684	2L_2671684_SNP [dm3] 2L_2671684_SNP [dm6]	C	T	2.672e^-4	0.832	SYNONYMOUS_CODING Gr23a INTRON Gr23a
2R	12674005	2R_12674005_SNP [dm3] 2R_16786500_SNP [dm6]	T	A	2.678e^-4	0.832	UPSTREAM CG5522 INTRON CG5522	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19599724	2R_19599724_SNP [dm3] 2R_23712201_SNP [dm6]	G	A	2.695e^-4	0.832	INTERGENIC
3R	18062401	3R_18062401_SNP [dm3] 3R_22236679_SNP [dm6]	A	T	2.703e^-4	0.832	INTRON SKIP
3L	24524075	3L_24524075_SNP [dm3] 3L_24530976_SNP [dm6]	T	C	2.707e^-4	0.832	INTERGENIC
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	2.708e^-4	0.832	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	15037608	2R_15037608_INS [dm3] 2R_19150103_INS [dm6]	A	AGCGTTGA	2.714e^-4	0.832	INTRON ena
3L	23141719	3L_23141719_SNP [dm3] 3L_23148619_SNP [dm6]	G	C	2.720e^-4	0.832	NON_SYNONYMOUS_CODING CG32350 UPSTREAM CR45164
2L	8798983	2L_8798983_SNP [dm3] 2L_8798983_SNP [dm6]	C	T	2.720e^-4	0.832	INTERGENIC
3L	9854733	3L_9854733_SNP [dm3] 3L_9861633_SNP [dm6]	T	C	2.734e^-4	0.832	SYNONYMOUS_CODING iPLA2-VIA
2L	14970462	2L_14970462_SNP [dm3] 2L_14970462_SNP [dm6]	G	C	2.735e^-4	0.832	INTRON CG42313
3L	4710364	3L_4710364_SNP [dm3] 3L_4710364_SNP [dm6]	T	A	2.735e^-4	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5778340	2L_5778340_SNP [dm3] 2L_5778340_SNP [dm6]	T	C	2.738e^-4	0.832	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4012885	3L_4012885_SNP [dm3] 3L_4012885_SNP [dm6]	G	C	2.738e^-4	0.832	INTERGENIC
X	15069165	X_15069165_SNP [dm3] X_15175132_SNP [dm6]	A	T	2.751e^-4	0.832	UPSTREAM CG43737 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7151877	2R_7151877_SNP [dm3] 2R_11264372_SNP [dm6]	C	A	2.756e^-4	0.832	UPSTREAM Cpr47Ee INTERGENIC
3L	11339275	3L_11339275_SNP [dm3] 3L_11346175_SNP [dm6]	A	G	2.756e^-4	0.832	INTERGENIC
2R	12314763	2R_12314763_SNP [dm3] 2R_16427258_SNP [dm6]	C	A	2.761e^-4	0.832	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5328062	3R_5328062_SNP [dm3] 3R_9502340_SNP [dm6]	A	T	2.763e^-4	0.832	INTRON RhoL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15167088	3R_15167088_SNP [dm3] 3R_19341366_SNP [dm6]	T	C	2.764e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10491710	3L_10491710_SNP [dm3] 3L_10498610_SNP [dm6]	C	G	2.772e^-4	0.832	INTRON A2bp1
3L	995222	3L_995222_SNP [dm3] 3L_995222_SNP [dm6]	C	T	2.774e^-4	0.832	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3L	992126	3L_992126_SNP [dm3] 3L_992126_SNP [dm6]	T	C	2.777e^-4	0.832	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3R	18746416	3R_18746416_SNP [dm3] 3R_22920694_SNP [dm6]	G	A	2.780e^-4	0.832	INTRON klg
X	8097831	X_8097831_SNP [dm3] X_8203798_SNP [dm6]	T	A	2.791e^-4	0.832	INTRON sdt
2L	1849559	2L_1849559_SNP [dm3] 2L_1849559_SNP [dm6]	T	C	2.792e^-4	0.832	INTRON wry
3R	15167084	3R_15167084_SNP [dm3] 3R_19341362_SNP [dm6]	T	C	2.801e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13912352	3R_13912352_SNP [dm3] 3R_18086630_SNP [dm6]	C	T	2.809e^-4	0.832	INTERGENIC
2L	8898158	2L_8898158_SNP [dm3] 2L_8898158_SNP [dm6]	A	G	2.809e^-4	0.832	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17370221	3R_17370221_SNP [dm3] 3R_21544499_SNP [dm6]	C	A	2.811e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	21853311	3L_21853311_SNP [dm3] 3L_21860211_SNP [dm6]	T	C	2.812e^-4	0.832	INTRON mub	TF binding site mE1_TFBS_inv
2L	13506731	2L_13506731_SNP [dm3] 2L_13506731_SNP [dm6]	T	C	2.817e^-4	0.832	INTRON B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8250775	3L_8250775_SNP [dm3] 3L_8257675_SNP [dm6]	G	A	2.828e^-4	0.832	INTRON Dscam4
3L	4710366	3L_4710366_SNP [dm3] 3L_4710366_SNP [dm6]	C	T	2.832e^-4	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12089012	X_12089012_SNP [dm3] X_12194979_SNP [dm6]	C	A	2.833e^-4	0.832	INTRON Ten-a
2R	17239478	2R_17239478_SNP [dm3] 2R_21351973_SNP [dm6]	G	A	2.836e^-4	0.832	INTERGENIC
2L	4935924	2L_4935924_SNP [dm3] 2L_4935924_SNP [dm6]	G	A	2.837e^-4	0.832	INTRON hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17461837	2R_17461837_SNP [dm3] 2R_21574332_SNP [dm6]	G	T	2.857e^-4	0.832	INTRON CG10440
3R	5152390	3R_5152390_SNP [dm3] 3R_9326668_SNP [dm6]	G	T	2.857e^-4	0.832	INTRON CG8861
3L	13381438	3L_13381438_SNP [dm3] 3L_13388338_SNP [dm6]	T	C	2.858e^-4	0.832	UTR_3_PRIME Poc1 UPSTREAM CG10171
3L	11142376	3L_11142376_SNP [dm3] 3L_11149276_SNP [dm6]	G	A	2.860e^-4	0.832	DOWNSTREAM CG6216 INTRON CG32082
3L	12853483	3L_12853483_SNP [dm3] 3L_12860383_SNP [dm6]	A	G	2.862e^-4	0.832	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
X	12098928	X_12098928_SNP [dm3] X_12204895_SNP [dm6]	C	T	2.863e^-4	0.832	INTRON Ten-a
X	16055500	X_16055500_SNP [dm3] X_16161467_SNP [dm6]	G	A	2.866e^-4	0.832	INTERGENIC
3L	15320777	3L_15320777_SNP [dm3] 3L_15327677_SNP [dm6]	A	C	2.868e^-4	0.832	INTERGENIC
X	22298530	X_22298530_SNP [dm3] X_22896694_SNP [dm6]	G	C	2.876e^-4	0.832	INTERGENIC	transposable element FlyBase
2R	20225004	2R_20225004_SNP [dm3] 2R_24337481_SNP [dm6]	T	C	2.879e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17910182	3L_17910182_DEL [dm3] 3L_17917082_DEL [dm6]	CC	C	2.881e^-4	0.832	INTERGENIC
3R	9637929	3R_9637929_SNP [dm3] 3R_13812207_SNP [dm6]	G	A	2.894e^-4	0.832	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13570452	3R_13570452_SNP [dm3] 3R_17744730_SNP [dm6]	C	T	2.895e^-4	0.832	INTRON TyrRII
3L	8664507	3L_8664507_SNP [dm3] 3L_8671407_SNP [dm6]	G	C	2.908e^-4	0.832	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18675231	2R_18675231_SNP [dm3] 2R_22787726_SNP [dm6]	C	G	2.913e^-4	0.832	INTRON CG42260
X	8130807	X_8130807_SNP [dm3] X_8236774_SNP [dm6]	A	G	2.916e^-4	0.832	SYNONYMOUS_CODING sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18675227	2R_18675227_DEL [dm3] 2R_22787722_DEL [dm6]	AG	A	2.917e^-4	0.832	INTRON CG42260
2R	18675230	2R_18675230_SNP [dm3] 2R_22787725_SNP [dm6]	A	T	2.917e^-4	0.832	INTRON CG42260
2R	18675234	2R_18675234_MNP [dm3] 2R_22787729_MNP [dm6]	GTA	ACC	2.917e^-4	0.832	INTRON CG42260
2R	9148478	2R_9148478_SNP [dm3] 2R_13260973_SNP [dm6]	G	T	2.917e^-4	0.832	INTRON CG42319
3L	12853534	3L_12853534_SNP [dm3] 3L_12860434_SNP [dm6]	A	C	2.919e^-4	0.832	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
X	15292592	X_15292592_SNP [dm3] X_15398559_SNP [dm6]	C	G	2.919e^-4	0.832	SYNONYMOUS_CODING Cngl
X	15068903	X_15068903_SNP [dm3] X_15174870_SNP [dm6]	A	T	2.919e^-4	0.832	UPSTREAM CG43737 INTERGENIC
X	590706	X_590706_SNP [dm3] X_696673_SNP [dm6]	T	A	2.921e^-4	0.832	INTRON sdk
X	15070523	X_15070523_DEL [dm3] X_15176490_DEL [dm6]	CCGGCTTGCGTGTATT...	C	2.926e^-4	0.832	INTRON CG43737
X	5197336	X_5197336_SNP [dm3] X_5303303_SNP [dm6]	G	A	2.930e^-4	0.832	SYNONYMOUS_CODING CG3323 DOWNSTREAM CG42749 INTRON CG42749
3L	3006864	3L_3006864_SNP [dm3] 3L_3006864_SNP [dm6]	G	T	2.933e^-4	0.832	INTRON FMRFaR
2L	17640267	2L_17640267_SNP [dm3] 2L_17640267_SNP [dm6]	A	T	2.942e^-4	0.832	INTERGENIC
3L	16948762	3L_16948762_SNP [dm3] 3L_16955662_SNP [dm6]	T	C	2.943e^-4	0.832	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14673758	3L_14673758_SNP [dm3] 3L_14680658_SNP [dm6]	A	C	2.960e^-4	0.832	SYNONYMOUS_CODING ome
X	15068884	X_15068884_DEL [dm3] X_15174851_DEL [dm6]	ATTAC	CA	2.964e^-4	0.832	UPSTREAM CG43737 INTERGENIC
3R	10253269	3R_10253269_SNP [dm3] 3R_14427547_SNP [dm6]	T	A	2.969e^-4	0.832	SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6641276	2R_6641276_SNP [dm3] 2R_10753771_SNP [dm6]	G	A	2.970e^-4	0.832	INTRON CG33144
X	15151810	X_15151810_SNP [dm3] X_15257777_SNP [dm6]	T	C	2.973e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16293721	2L_16293721_SNP [dm3] 2L_16293721_SNP [dm6]	T	G	2.985e^-4	0.832	UPSTREAM CG13258 & 1 other EXON CR44899
3L	17905347	3L_17905347_INS [dm3] 3L_17912247_INS [dm6]	C	CTGTAC	2.991e^-4	0.832	FRAME_SHIFT CG5290 SPLICE_SITE_REGION CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	430862	3L_430862_SNP [dm3] 3L_430862_SNP [dm6]	C	T	2.991e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11854106	2L_11854106_SNP [dm3] 2L_11854106_SNP [dm6]	G	A	2.992e^-4	0.832	DOWNSTREAM CG42751 INTRON Pde1c
X	6815436	X_6815436_SNP [dm3] X_6921403_SNP [dm6]	T	A	2.993e^-4	0.832	INTRON CG14431
3L	23079569	3L_23079569_SNP [dm3] 3L_23086469_SNP [dm6]	A	G	2.995e^-4	0.832	INTERGENIC	transposable element FlyBase
3L	9247296	3L_9247296_SNP [dm3] 3L_9254196_SNP [dm6]	A	C	2.996e^-4	0.832	INTRON GluRIB
3R	10183370	3R_10183370_SNP [dm3] 3R_14357648_SNP [dm6]	G	A	2.997e^-4	0.832	DOWNSTREAM CG31320 INTRON NK7.1
3R	23142670	3R_23142670_SNP [dm3] 3R_27316948_SNP [dm6]	T	C	3.010e^-4	0.832	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	20012582	2L_20012582_SNP [dm3] 2L_20012582_SNP [dm6]	C	T	3.015e^-4	0.832	INTRON CG43861
3L	10491735	3L_10491735_SNP [dm3] 3L_10498635_SNP [dm6]	T	C	3.027e^-4	0.832	INTRON A2bp1
2L	14866106	2L_14866106_SNP [dm3] 2L_14866106_SNP [dm6]	C	T	3.028e^-4	0.832	INTERGENIC
3L	22513337	3L_22513337_SNP [dm3] 3L_22520237_SNP [dm6]	G	A	3.036e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13598038	2R_13598038_SNP [dm3] 2R_17710533_SNP [dm6]	G	T	3.046e^-4	0.832	INTRON CG6424
2R	16812437	2R_16812437_SNP [dm3] 2R_20924932_SNP [dm6]	C	A	3.046e^-4	0.832	INTRON Rx
3L	23020194	3L_23020194_SNP [dm3] 3L_23027094_SNP [dm6]	T	C	3.049e^-4	0.832	INTRON nrm
3L	7798990	3L_7798990_SNP [dm3] 3L_7805890_SNP [dm6]	A	C	3.050e^-4	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7268201	3L_7268201_SNP [dm3] 3L_7275101_SNP [dm6]	G	C	3.065e^-4	0.832	INTRON unc-13-4A
3R	21681464	3R_21681464_SNP [dm3] 3R_25855742_SNP [dm6]	T	G	3.071e^-4	0.832	UPSTREAM CG5890 INTERGENIC
3R	5726392	3R_5726392_DEL [dm3] 3R_9900670_DEL [dm6]	TAGTT	T	3.091e^-4	0.832	INTRON Glut4EF
3L	6890808	3L_6890808_SNP [dm3] 3L_6897708_SNP [dm6]	T	C	3.096e^-4	0.832	INTERGENIC
3R	24501211	3R_24501211_SNP [dm3] 3R_28675489_SNP [dm6]	G	C	3.097e^-4	0.832	UTR_5_PRIME CG9990
3L	9425671	3L_9425671_SNP [dm3] 3L_9432571_SNP [dm6]	G	A	3.100e^-4	0.832	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15889292	3L_15889292_SNP [dm3] 3L_15896192_SNP [dm6]	T	G	3.103e^-4	0.832	INTRON pHCl
3R	6465132	3R_6465132_SNP [dm3] 3R_10639410_SNP [dm6]	C	G	3.107e^-4	0.832	UTR_5_PRIME hth EXON CR44018	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	5362338	3R_5362338_SNP [dm3] 3R_9536616_SNP [dm6]	G	T	3.117e^-4	0.832	UTR_3_PRIME mura
2L	8801402	2L_8801402_SNP [dm3] 2L_8801402_SNP [dm6]	C	G	3.120e^-4	0.832	INTERGENIC
3L	17896019	3L_17896019_SNP [dm3] 3L_17902919_SNP [dm6]	A	C	3.127e^-4	0.832	INTRON Prestin
2R	3700336	2R_3700336_SNP [dm3] 2R_7812831_SNP [dm6]	G	T	3.134e^-4	0.832	UTR_5_PRIME CG1882 UPSTREAM CG1550 & 1 other INTRON CG1882	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3700977	2R_3700977_SNP [dm3] 2R_7813472_SNP [dm6]	G	A	3.134e^-4	0.832	SYNONYMOUS_CODING CG1882	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9498385	3L_9498385_INS [dm3] 3L_9505285_INS [dm6]	C	CC	3.135e^-4	0.832	UTR_5_PRIME path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16418064	2R_16418064_SNP [dm3] 2R_20530559_SNP [dm6]	T	G	3.146e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19607409	2R_19607409_SNP [dm3] 2R_23719886_SNP [dm6]	C	A	3.148e^-4	0.832	START_GAINED CG18128 UTR_5_PRIME CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	6147546	2L_6147546_SNP [dm3] 2L_6147546_SNP [dm6]	C	T	3.148e^-4	0.832	INTERGENIC
3L	10241193	3L_10241193_SNP [dm3] 3L_10248093_SNP [dm6]	C	G	3.154e^-4	0.832	DOWNSTREAM CR44539 EXON CR44540
3R	18826507	3R_18826507_SNP [dm3] 3R_23000785_SNP [dm6]	T	C	3.155e^-4	0.832	SYNONYMOUS_CODING CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10888210	3R_10888210_SNP [dm3] 3R_15062488_SNP [dm6]	A	T	3.157e^-4	0.832	INTRON dpr9
2R	7371094	2R_7371094_SNP [dm3] 2R_11483589_SNP [dm6]	G	A	3.160e^-4	0.832	INTRON inv
3R	13924914	3R_13924914_SNP [dm3] 3R_18099192_SNP [dm6]	T	C	3.161e^-4	0.832	INTRON sr
3R	21683915	3R_21683915_SNP [dm3] 3R_25858193_SNP [dm6]	C	T	3.161e^-4	0.832	INTRON CG5890
2L	2860160	2L_2860160_SNP [dm3] 2L_2860160_SNP [dm6]	A	G	3.162e^-4	0.832	INTRON CG2991	TF binding site mE1_TFBS_inv
3R	25304125	3R_25304125_SNP [dm3] 3R_29478403_SNP [dm6]	G	C	3.167e^-4	0.832	UPSTREAM Ptp99A INTRON Ptp99A
3L	12235524	3L_12235524_SNP [dm3] 3L_12242424_SNP [dm6]	G	A	3.167e^-4	0.832	INTRON app
2L	16552074	2L_16552074_SNP [dm3] 2L_16552074_SNP [dm6]	C	A	3.174e^-4	0.832	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	16721454	3L_16721454_INS [dm3] 3L_16728354_INS [dm6]	T	AG	3.174e^-4	0.832	UPSTREAM PGRP-SB1 DOWNSTREAM Dbp73D INTERGENIC	regulatory region REDfly_CRMs
3L	23034892	3L_23034892_SNP [dm3] 3L_23041792_SNP [dm6]	T	C	3.182e^-4	0.832	INTERGENIC
2R	3756233	2R_3756233_SNP [dm3] 2R_7868728_SNP [dm6]	C	T	3.185e^-4	0.832	INTRON Dgk
3R	10074632	3R_10074632_SNP [dm3] 3R_14248910_SNP [dm6]	A	T	3.200e^-4	0.832	INTERGENIC
X	5980826	X_5980826_SNP [dm3] X_6086793_SNP [dm6]	A	G	3.203e^-4	0.832	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15624231	2L_15624231_SNP [dm3] 2L_15624231_SNP [dm6]	G	A	3.206e^-4	0.832	UPSTREAM Or35a INTERGENIC
3L	4012879	3L_4012879_SNP [dm3] 3L_4012879_SNP [dm6]	C	T	3.206e^-4	0.832	INTERGENIC
3R	25167560	3R_25167560_SNP [dm3] 3R_29341838_SNP [dm6]	A	C	3.208e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8798781	2L_8798781_INS [dm3] 2L_8798781_INS [dm6]	G	AATAGAAAT	3.209e^-4	0.832	INTERGENIC
3L	8401047	3L_8401047_SNP [dm3] 3L_8407947_SNP [dm6]	T	A	3.220e^-4	0.832	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
2L	10849237	2L_10849237_SNP [dm3] 2L_10849237_SNP [dm6]	C	A	3.220e^-4	0.832	UPSTREAM porin & 1 other INTRON porin
X	15269693	X_15269693_SNP [dm3] X_15375660_SNP [dm6]	T	C	3.226e^-4	0.832	INTRON acj6
3L	9283163	3L_9283163_SNP [dm3] 3L_9290063_SNP [dm6]	G	A	3.230e^-4	0.832	INTERGENIC
3L	15033926	3L_15033926_SNP [dm3] 3L_15040826_SNP [dm6]	G	T	3.230e^-4	0.832	DOWNSTREAM Rpn12R INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	9211231	2L_9211231_INS [dm3] 2L_9211231_INS [dm6]	A	AA	3.232e^-4	0.832	INTRON tai
X	18468653	X_18468653_SNP [dm3] X_18574620_SNP [dm6]	A	C	3.233e^-4	0.832	INTERGENIC
3R	14168908	3R_14168908_SNP [dm3] 3R_18343186_SNP [dm6]	C	G	3.233e^-4	0.832	INTRON CG15803
3L	14964931	3L_14964931_INS [dm3] 3L_14971831_INS [dm6]	A	AA	3.238e^-4	0.832	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	7546960	3L_7546960_SNP [dm3] 3L_7553860_SNP [dm6]	T	C	3.239e^-4	0.832	INTERGENIC
X	16579012	X_16579012_SNP [dm3] X_16684979_SNP [dm6]	A	G	3.241e^-4	0.832	UTR_3_PRIME Sep4
3R	5389990	3R_5389990_SNP [dm3] 3R_9564268_SNP [dm6]	C	T	3.245e^-4	0.832	SYNONYMOUS_CODING Vps45 UPSTREAM CG9393	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	10617455	2R_10617455_SNP [dm3] 2R_14729950_SNP [dm6]	A	G	3.249e^-4	0.832	INTERGENIC
2R	11083839	2R_11083839_SNP [dm3] 2R_15196334_SNP [dm6]	T	G	3.256e^-4	0.832	INTERGENIC
3L	10757592	3L_10757592_SNP [dm3] 3L_10764492_SNP [dm6]	T	G	3.262e^-4	0.832	INTERGENIC
X	12098932	X_12098932_SNP [dm3] X_12204899_SNP [dm6]	T	A	3.275e^-4	0.832	INTRON Ten-a
2R	18241489	2R_18241489_SNP [dm3] 2R_22353984_SNP [dm6]	G	A	3.291e^-4	0.832	INTRON Liprin-gamma
2L	3938013	2L_3938013_SNP [dm3] 2L_3938013_SNP [dm6]	C	T	3.294e^-4	0.832	INTRON fred
3L	10757577	3L_10757577_SNP [dm3] 3L_10764477_SNP [dm6]	G	T	3.295e^-4	0.832	INTERGENIC
3L	10276199	3L_10276199_SNP [dm3] 3L_10283099_SNP [dm6]	T	C	3.298e^-4	0.832	INTERGENIC
2R	7406744	2R_7406744_SNP [dm3] 2R_11519239_SNP [dm6]	G	C	3.298e^-4	0.832	INTERGENIC
X	9881050	X_9881050_SNP [dm3] X_9987017_SNP [dm6]	G	A	3.298e^-4	0.832	INTERGENIC
2R	19606889	2R_19606889_SNP [dm3] 2R_23719366_SNP [dm6]	G	A	3.299e^-4	0.832	SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8432339	X_8432339_SNP [dm3] X_8538306_SNP [dm6]	A	T	3.304e^-4	0.832	INTRON Nrg
2R	19607651	2R_19607651_SNP [dm3] 2R_23720128_SNP [dm6]	T	G	3.307e^-4	0.832	UPSTREAM CG18128 DOWNSTREAM CR45325 INTRON Sesn
X	3142787	X_3142787_INS [dm3] X_3248754_INS [dm6]	G	GCTG	3.307e^-4	0.832	CODON_INSERTION Pig1 UPSTREAM Sgs4 INTRON dnc
2R	19606898	2R_19606898_SNP [dm3] 2R_23719375_SNP [dm6]	G	T	3.314e^-4	0.832	SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15797275	2R_15797275_SNP [dm3] 2R_19909770_SNP [dm6]	C	G	3.315e^-4	0.832	DOWNSTREAM CR44573 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13804095	3R_13804095_SNP [dm3] 3R_17978373_SNP [dm6]	G	C	3.316e^-4	0.832	INTRON cpo
3R	16915135	3R_16915135_SNP [dm3] 3R_21089413_SNP [dm6]	C	T	3.320e^-4	0.832	INTRON RhoGAP93B & 1 other
3L	19047161	3L_19047161_SNP [dm3] 3L_19054061_SNP [dm6]	G	A	3.326e^-4	0.832	UPSTREAM CG43407 INTERGENIC
3L	23138497	3L_23138497_SNP [dm3] 3L_23145397_SNP [dm6]	T	G	3.328e^-4	0.832	INTERGENIC	transposable element FlyBase
2R	16418057	2R_16418057_SNP [dm3] 2R_20530552_SNP [dm6]	T	A	3.339e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7511852	2L_7511852_SNP [dm3] 2L_7511852_SNP [dm6]	C	A	3.341e^-4	0.832	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	5798597	3R_5798597_SNP [dm3] 3R_9972875_SNP [dm6]	T	A	3.343e^-4	0.832	INTRON Glut4EF
X	21847456	X_21847456_SNP [dm3] X_22445620_SNP [dm6]	C	A	3.349e^-4	0.832	INTRON CG14621
3L	17894334	3L_17894334_SNP [dm3] 3L_17901234_SNP [dm6]	A	G	3.351e^-4	0.832	SYNONYMOUS_CODING Prestin
2L	10051123	2L_10051123_SNP [dm3] 2L_10051123_SNP [dm6]	T	C	3.357e^-4	0.832	UTR_3_PRIME CG33301 UPSTREAM CR44874 DOWNSTREAM CG33301
3R	13570542	3R_13570542_SNP [dm3] 3R_17744820_SNP [dm6]	G	A	3.362e^-4	0.832	INTRON TyrRII
3L	4174670	3L_4174670_SNP [dm3] 3L_4174670_SNP [dm6]	G	C	3.369e^-4	0.832	SPLICE_SITE_REGION CG18675 DOWNSTREAM Ero1L & 1 other INTRON CG18675
X	16360848	X_16360848_SNP [dm3] X_16466815_SNP [dm6]	A	G	3.378e^-4	0.832	INTRON para
3R	14094242	3R_14094242_SNP [dm3] 3R_18268520_SNP [dm6]	T	C	3.381e^-4	0.832	INTRON CG18599
3R	2591251	3R_2591251_SNP [dm3] 3R_6765529_SNP [dm6]	T	G	3.383e^-4	0.832	DOWNSTREAM Ama EXON CR44930	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10183658	3R_10183658_SNP [dm3] 3R_14357936_SNP [dm6]	A	T	3.394e^-4	0.832	DOWNSTREAM CG31320 INTRON NK7.1
3L	8390200	3L_8390200_SNP [dm3] 3L_8397100_SNP [dm6]	G	A	3.408e^-4	0.832	UPSTREAM CG7120 INTRON CG7120	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25167563	3R_25167563_SNP [dm3] 3R_29341841_SNP [dm6]	A	T	3.409e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4078354	2L_4078354_SNP [dm3] 2L_4078354_SNP [dm6]	C	G	3.409e^-4	0.832	INTRON ed
3R	5386540	3R_5386540_SNP [dm3] 3R_9560818_SNP [dm6]	C	T	3.432e^-4	0.832	DOWNSTREAM CG9393 INTRON MBD-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	3543918	3R_3543918_SNP [dm3] 3R_7718196_SNP [dm6]	A	T	3.439e^-4	0.832	INTERGENIC
2L	8934580	2L_8934580_SNP [dm3] 2L_8934580_SNP [dm6]	C	G	3.440e^-4	0.832	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTRON Tsp29Fa
2R	7551219	2R_7551219_SNP [dm3] 2R_11663714_SNP [dm6]	T	G	3.444e^-4	0.832	INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5445890	3R_5445890_SNP [dm3] 3R_9620168_SNP [dm6]	A	G	3.447e^-4	0.832	INTRON CG8312
3L	5899340	3L_5899340_SNP [dm3] 3L_5906240_SNP [dm6]	A	C	3.451e^-4	0.832	SYNONYMOUS_CODING CG10486
3L	9252371	3L_9252371_SNP [dm3] 3L_9259271_SNP [dm6]	T	A	3.458e^-4	0.832	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18500303	2R_18500303_SNP [dm3] 2R_22612798_SNP [dm6]	A	G	3.463e^-4	0.832	SPLICE_SITE_REGION CG4329 INTRON CG4329
3L	2324617	3L_2324617_SNP [dm3] 3L_2324617_SNP [dm6]	C	A	3.464e^-4	0.832	INTRON MsR1
3L	10496436	3L_10496436_SNP [dm3] 3L_10503336_SNP [dm6]	G	A	3.467e^-4	0.832	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	13847045	3L_13847045_DEL [dm3] 3L_13853945_DEL [dm6]	TT	T	3.468e^-4	0.832	SPLICE_SITE_REGION Hml INTRON Hml	TF binding site mE1_TFBS_cad
2R	19366115	2R_19366115_DEL [dm3] 2R_23478592_DEL [dm6]	ACAATG	A	3.471e^-4	0.832	INTRON CG43795
3R	5123499	3R_5123499_SNP [dm3] 3R_9297777_SNP [dm6]	C	T	3.474e^-4	0.832	INTRON CG8861
2L	8263112	2L_8263112_SNP [dm3] 2L_8263112_SNP [dm6]	T	C	3.476e^-4	0.832	INTRON Btk29A
3R	11420834	3R_11420834_SNP [dm3] 3R_15595112_SNP [dm6]	C	T	3.482e^-4	0.832	INTERGENIC
2R	14972746	2R_14972746_INS [dm3] 2R_19085241_INS [dm6]	T	TT	3.484e^-4	0.832	INTRON 5-HT1A
3L	17905541	3L_17905541_SNP [dm3] 3L_17912441_SNP [dm6]	G	T	3.491e^-4	0.832	UTR_5_PRIME CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	3650404	2R_3650404_SNP [dm3] 2R_7762899_SNP [dm6]	A	G	3.494e^-4	0.832	INTRON CG30497 & 1 other
3L	16721190	3L_16721190_SNP [dm3] 3L_16728090_SNP [dm6]	G	A	3.495e^-4	0.832	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	3334417	3L_3334417_SNP [dm3] 3L_3334417_SNP [dm6]	G	A	3.498e^-4	0.832	SYNONYMOUS_CODING CG14969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14920898	2R_14920898_SNP [dm3] 2R_19033393_SNP [dm6]	C	T	3.499e^-4	0.832	UPSTREAM 5-HT1B INTERGENIC
3R	5602759	3R_5602759_SNP [dm3] 3R_9777037_SNP [dm6]	A	G	3.504e^-4	0.832	INTRON topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	3981111	3R_3981111_SNP [dm3] 3R_8155389_SNP [dm6]	T	A	3.505e^-4	0.832	INTRON grn
3R	26037227	3R_26037227_SNP [dm3] 3R_30211505_SNP [dm6]	T	A	3.507e^-4	0.832	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
3R	14059114	3R_14059114_SNP [dm3] 3R_18233392_SNP [dm6]	A	T	3.515e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
3L	995303	3L_995303_SNP [dm3] 3L_995303_SNP [dm6]	C	T	3.516e^-4	0.832	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
X	12383924	X_12383924_SNP [dm3] X_12489891_SNP [dm6]	A	G	3.516e^-4	0.832	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
3R	11017644	3R_11017644_SNP [dm3] 3R_15191922_SNP [dm6]	G	C	3.530e^-4	0.832	SYNONYMOUS_CODING CG6752 DOWNSTREAM Gyc88E & 1 other
3R	5761236	3R_5761236_SNP [dm3] 3R_9935514_SNP [dm6]	A	G	3.534e^-4	0.832	INTRON Glut4EF
3R	10038759	3R_10038759_SNP [dm3] 3R_14213037_SNP [dm6]	T	A	3.545e^-4	0.832	INTRON Dop1R1
3R	21279837	3R_21279837_SNP [dm3] 3R_25454115_SNP [dm6]	T	C	3.546e^-4	0.832	INTRON Fur1
3L	8070513	3L_8070513_SNP [dm3] 3L_8077413_SNP [dm6]	T	A	3.549e^-4	0.832	UTR_5_PRIME Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
2R	11083889	2R_11083889_SNP [dm3] 2R_15196384_SNP [dm6]	G	C	3.552e^-4	0.832	INTERGENIC
X	17394896	X_17394896_DEL [dm3] X_17500863_DEL [dm6]	TAT	T	3.559e^-4	0.832	INTRON CG43658
3L	8573684	3L_8573684_SNP [dm3] 3L_8580584_SNP [dm6]	A	T	3.570e^-4	0.832	INTRON CG43078
3L	6888952	3L_6888952_SNP [dm3] 3L_6895852_SNP [dm6]	G	T	3.572e^-4	0.832	INTERGENIC
3L	10496040	3L_10496040_SNP [dm3] 3L_10502940_SNP [dm6]	A	T	3.572e^-4	0.832	INTRON A2bp1
2R	18372002	2R_18372002_SNP [dm3] 2R_22484497_SNP [dm6]	A	T	3.574e^-4	0.832	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15889722	3L_15889722_SNP [dm3] 3L_15896622_SNP [dm6]	A	G	3.578e^-4	0.832	INTRON pHCl
3R	15668247	3R_15668247_SNP [dm3] 3R_19842525_SNP [dm6]	A	C	3.587e^-4	0.832	DOWNSTREAM CG31459 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7329621	3L_7329621_SNP [dm3] 3L_7336521_SNP [dm6]	T	G	3.593e^-4	0.832	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20217665	2R_20217665_SNP [dm3] 2R_24330142_SNP [dm6]	C	T	3.603e^-4	0.832	EXON CR44810	TF binding site mE1_TFBS_Trl
3L	6890793	3L_6890793_DEL [dm3] 3L_6897693_DEL [dm6]	AAA	A	3.607e^-4	0.832	INTERGENIC
X	5918312	X_5918312_SNP [dm3] X_6024279_SNP [dm6]	T	C	3.611e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA
2R	18794828	2R_18794828_SNP [dm3] 2R_22907305_SNP [dm6]	T	A	3.613e^-4	0.832	INTRON nahoda
X	5980874	X_5980874_SNP [dm3] X_6086841_SNP [dm6]	A	G	3.616e^-4	0.832	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12665659	2R_12665659_SNP [dm3] 2R_16778154_SNP [dm6]	T	A	3.619e^-4	0.832	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17152254	X_17152254_SNP [dm3] X_17258221_SNP [dm6]	G	C	3.620e^-4	0.832	INTRON f
3L	21852730	3L_21852730_SNP [dm3] 3L_21859630_SNP [dm6]	G	T	3.622e^-4	0.832	INTRON mub
X	5290044	X_5290044_SNP [dm3] X_5396011_SNP [dm6]	G	A	3.624e^-4	0.832	INTRON SK
X	5290049	X_5290049_SNP [dm3] X_5396016_SNP [dm6]	A	G	3.624e^-4	0.832	INTRON SK
3R	21279810	3R_21279810_INS [dm3] 3R_25454088_INS [dm6]	G	GCACTTATAAGTGTAAG...	3.625e^-4	0.832	INTRON Fur1
X	6062180	X_6062180_SNP [dm3] X_6168147_SNP [dm6]	G	C	3.633e^-4	0.832	INTRON Ca-alpha1T
X	6062182	X_6062182_SNP [dm3] X_6168149_SNP [dm6]	G	T	3.633e^-4	0.832	INTRON Ca-alpha1T
3L	18538851	3L_18538851_SNP [dm3] 3L_18545751_SNP [dm6]	G	A	3.639e^-4	0.832	INTERGENIC
3L	12858005	3L_12858005_SNP [dm3] 3L_12864905_SNP [dm6]	A	G	3.643e^-4	0.832	INTERGENIC
3L	9007750	3L_9007750_SNP [dm3] 3L_9014650_SNP [dm6]	A	G	3.652e^-4	0.832	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18675238	2R_18675238_SNP [dm3] 2R_22787733_SNP [dm6]	A	T	3.660e^-4	0.832	INTRON CG42260
3L	13123693	3L_13123693_SNP [dm3] 3L_13130593_SNP [dm6]	A	G	3.663e^-4	0.832	INTERGENIC
2L	15626570	2L_15626570_SNP [dm3] 2L_15626570_SNP [dm6]	C	G	3.671e^-4	0.832	INTERGENIC
3L	23020724	3L_23020724_SNP [dm3] 3L_23027624_SNP [dm6]	A	G	3.672e^-4	0.832	INTRON nrm
3R	13912366	3R_13912366_SNP [dm3] 3R_18086644_SNP [dm6]	A	T	3.676e^-4	0.832	INTERGENIC
3L	24533088	3L_24533088_SNP [dm3] 3L_24539988_SNP [dm6]	G	A	3.677e^-4	0.832	INTRON mRpS5
3L	23020804	3L_23020804_SNP [dm3] 3L_23027704_SNP [dm6]	A	G	3.678e^-4	0.832	INTRON nrm
2L	16177192	2L_16177192_SNP [dm3] 2L_16177192_SNP [dm6]	T	C	3.680e^-4	0.832	SYNONYMOUS_CODING Ca-alpha1D
2R	19260245	2R_19260245_SNP [dm3] 2R_23372722_SNP [dm6]	G	C	3.684e^-4	0.832	NON_SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10097673	3L_10097673_SNP [dm3] 3L_10104573_SNP [dm6]	T	G	3.691e^-4	0.832	INTRON dpr6
3L	14966122	3L_14966122_SNP [dm3] 3L_14973022_SNP [dm6]	T	C	3.699e^-4	0.832	UTR_3_PRIME Brd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2637304	3R_2637304_DEL [dm3] 3R_6811582_DEL [dm6]	TTAGAA	T	3.702e^-4	0.832	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	14569108	3L_14569108_SNP [dm3] 3L_14576008_SNP [dm6]	C	A	3.706e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da
3R	10896892	3R_10896892_SNP [dm3] 3R_15071170_SNP [dm6]	T	C	3.708e^-4	0.832	INTRON dpr9
3R	9637905	3R_9637905_SNP [dm3] 3R_13812183_SNP [dm6]	G	A	3.716e^-4	0.832	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16559053	2R_16559053_SNP [dm3] 2R_20671548_SNP [dm6]	G	A	3.718e^-4	0.832	SYNONYMOUS_CODING CG30152 UPSTREAM CG30152 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16948779	3L_16948779_SNP [dm3] 3L_16955679_SNP [dm6]	T	C	3.719e^-4	0.832	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5401608	X_5401608_SNP [dm3] X_5507575_SNP [dm6]	A	T	3.722e^-4	0.832	DOWNSTREAM CR45519 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25414057	3R_25414057_SNP [dm3] 3R_29588335_SNP [dm6]	G	T	3.729e^-4	0.832	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
3R	12017288	3R_12017288_SNP [dm3] 3R_16191566_SNP [dm6]	A	T	3.737e^-4	0.832	INTRON sra
3R	12961233	3R_12961233_SNP [dm3] 3R_17135511_SNP [dm6]	G	A	3.740e^-4	0.832	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
3R	5374385	3R_5374385_SNP [dm3] 3R_9548663_SNP [dm6]	C	A	3.741e^-4	0.832	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi
2L	3942143	2L_3942143_SNP [dm3] 2L_3942143_SNP [dm6]	T	C	3.745e^-4	0.832	INTRON fred
3L	7374872	3L_7374872_SNP [dm3] 3L_7381772_SNP [dm6]	C	A	3.746e^-4	0.832	UPSTREAM smid & 1 other INTRON smid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7375272	3L_7375272_SNP [dm3] 3L_7382172_SNP [dm6]	C	T	3.746e^-4	0.832	UPSTREAM SMSr INTRON smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	8979892	X_8979892_INS [dm3] X_9085859_INS [dm6]	T	TCAAAT	3.759e^-4	0.832	UTR_3_PRIME APC4 UPSTREAM CG32708	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	18426484	X_18426484_SNP [dm3] X_18532451_SNP [dm6]	T	C	3.770e^-4	0.832	INTRON Bx
3L	1593993	3L_1593993_SNP [dm3] 3L_1593993_SNP [dm6]	T	G	3.770e^-4	0.832	SYNONYMOUS_CODING CG13917	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3R	6933454	3R_6933454_SNP [dm3] 3R_11107732_SNP [dm6]	A	T	3.771e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13040033	3L_13040033_SNP [dm3] 3L_13046933_SNP [dm6]	T	G	3.774e^-4	0.832	UPSTREAM CG11279 DOWNSTREAM Syx13 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15351004	3R_15351004_SNP [dm3] 3R_19525282_SNP [dm6]	T	G	3.784e^-4	0.832	NON_SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24229893	3R_24229893_SNP [dm3] 3R_28404171_SNP [dm6]	T	G	3.790e^-4	0.832	INTERGENIC
3L	18536600	3L_18536600_SNP [dm3] 3L_18543500_SNP [dm6]	T	C	3.797e^-4	0.832	INTERGENIC
2L	15603226	2L_15603226_SNP [dm3] 2L_15603226_SNP [dm6]	T	G	3.805e^-4	0.832	INTERGENIC
3R	12918205	3R_12918205_SNP [dm3] 3R_17092483_SNP [dm6]	T	C	3.805e^-4	0.832	SYNONYMOUS_CODING cher DOWNSTREAM cal1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
4	210562	4_210562_SNP [dm3] 4_189936_SNP [dm6]	G	C	3.811e^-4	0.832	UPSTREAM CG2316 INTRON CG2316
3L	24524085	3L_24524085_SNP [dm3] 3L_24530986_SNP [dm6]	C	T	3.816e^-4	0.832	INTERGENIC
3L	3111837	3L_3111837_SNP [dm3] 3L_3111837_SNP [dm6]	G	A	3.821e^-4	0.832	SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
2R	12563469	2R_12563469_SNP [dm3] 2R_16675964_SNP [dm6]	T	C	3.823e^-4	0.832	INTRON CG30463
3R	21860124	3R_21860124_SNP [dm3] 3R_26034402_SNP [dm6]	T	A	3.823e^-4	0.832	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	5123507	3R_5123507_SNP [dm3] 3R_9297785_SNP [dm6]	C	T	3.826e^-4	0.832	INTRON CG8861
3L	15320820	3L_15320820_SNP [dm3] 3L_15327720_SNP [dm6]	C	T	3.833e^-4	0.832	INTERGENIC
2R	16211890	2R_16211890_SNP [dm3] 2R_20324385_SNP [dm6]	C	A	3.834e^-4	0.832	SYNONYMOUS_CODING CG8920
3L	10842341	3L_10842341_SNP [dm3] 3L_10849241_SNP [dm6]	T	C	3.834e^-4	0.832	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	10962098	2L_10962098_SNP [dm3] 2L_10962098_SNP [dm6]	C	A	3.834e^-4	0.832	INTRON dpr2
3L	17896352	3L_17896352_SNP [dm3] 3L_17903252_SNP [dm6]	T	A	3.834e^-4	0.832	INTRON Prestin
3L	13381440	3L_13381440_SNP [dm3] 3L_13388340_SNP [dm6]	G	T	3.834e^-4	0.832	UTR_3_PRIME Poc1 UPSTREAM CG10171
2L	15621490	2L_15621490_SNP [dm3] 2L_15621490_SNP [dm6]	G	A	3.840e^-4	0.832	DOWNSTREAM Or35a INTERGENIC
3R	5123504	3R_5123504_SNP [dm3] 3R_9297782_SNP [dm6]	A	G	3.842e^-4	0.832	INTRON CG8861
3L	23076052	3L_23076052_SNP [dm3] 3L_23082952_SNP [dm6]	C	G	3.843e^-4	0.832	INTERGENIC
2R	13598243	2R_13598243_SNP [dm3] 2R_17710738_SNP [dm6]	C	T	3.850e^-4	0.832	INTRON CG6424
2L	9844799	2L_9844799_SNP [dm3] 2L_9844799_SNP [dm6]	C	T	3.851e^-4	0.832	INTRON nAChRalpha6
2L	16782293	2L_16782293_SNP [dm3] 2L_16782293_SNP [dm6]	G	A	3.858e^-4	0.832	INTRON Mhc	TF binding site mE1_TFBS_chinmo
X	12099128	X_12099128_SNP [dm3] X_12205095_SNP [dm6]	T	G	3.861e^-4	0.832	INTRON Ten-a
3R	13421911	3R_13421911_SNP [dm3] 3R_17596189_SNP [dm6]	G	A	3.862e^-4	0.832	UPSTREAM CG7606 DOWNSTREAM Sgs5 INTERGENIC
2R	19847592	2R_19847592_SNP [dm3] 2R_23960069_SNP [dm6]	G	A	3.866e^-4	0.832	NON_SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
X	18468509	X_18468509_SNP [dm3] X_18574476_SNP [dm6]	A	G	3.874e^-4	0.832	INTERGENIC
3L	4710383	3L_4710383_DEL [dm3] 3L_4710383_DEL [dm6]	CAATTCAATTATTC...	C	3.875e^-4	0.832	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15608139	2L_15608139_SNP [dm3] 2L_15608139_SNP [dm6]	C	A	3.884e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13381418	3L_13381418_SNP [dm3] 3L_13388318_SNP [dm6]	T	C	3.889e^-4	0.832	UTR_3_PRIME Poc1 UPSTREAM CG10171
3L	7960350	3L_7960350_SNP [dm3] 3L_7967250_SNP [dm6]	C	T	3.890e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2764903	2R_2764903_SNP [dm3] 2R_6877398_SNP [dm6]	A	T	3.891e^-4	0.832	INTRON CR44169 & 1 other
2R	19779911	2R_19779911_SNP [dm3] 2R_23892388_SNP [dm6]	C	T	3.891e^-4	0.832	SYNONYMOUS_CODING DNA-ligI DOWNSTREAM Upf3	TF binding site mE1_TFBS_sens
3R	10178376	3R_10178376_SNP [dm3] 3R_14352654_SNP [dm6]	G	T	3.894e^-4	0.832	INTRON NK7.1
X	15292583	X_15292583_SNP [dm3] X_15398550_SNP [dm6]	G	A	3.897e^-4	0.832	SYNONYMOUS_CODING Cngl
3L	12468515	3L_12468515_SNP [dm3] 3L_12475415_SNP [dm6]	G	A	3.903e^-4	0.832	SYNONYMOUS_CODING CG10663 DOWNSTREAM CG10616	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16009810	2R_16009810_SNP [dm3] 2R_20122305_SNP [dm6]	T	C	3.904e^-4	0.832	INTERGENIC
3R	25801899	3R_25801899_SNP [dm3] 3R_29976177_SNP [dm6]	A	T	3.906e^-4	0.832	INTERGENIC
2R	12299365	2R_12299365_SNP [dm3] 2R_16411860_SNP [dm6]	C	G	3.907e^-4	0.832	INTRON Sema-2b
3L	12934161	3L_12934161_SNP [dm3] 3L_12941061_SNP [dm6]	C	A	3.911e^-4	0.832	INTERGENIC
3R	16915137	3R_16915137_SNP [dm3] 3R_21089415_SNP [dm6]	T	A	3.920e^-4	0.832	INTRON RhoGAP93B & 1 other
3L	5331231	3L_5331231_SNP [dm3] 3L_5338131_SNP [dm6]	G	T	3.920e^-4	0.832	INTERGENIC
X	6062347	X_6062347_SNP [dm3] X_6168314_SNP [dm6]	A	G	3.925e^-4	0.832	INTRON Ca-alpha1T
X	6062202	X_6062202_SNP [dm3] X_6168169_SNP [dm6]	G	C	3.929e^-4	0.832	INTRON Ca-alpha1T
3R	21751121	3R_21751121_SNP [dm3] 3R_25925399_SNP [dm6]	C	T	3.930e^-4	0.832	INTRON CCAP-R
3R	5727473	3R_5727473_SNP [dm3] 3R_9901751_SNP [dm6]	A	G	3.935e^-4	0.832	INTRON Glut4EF
3L	18389273	3L_18389273_SNP [dm3] 3L_18396173_SNP [dm6]	C	T	3.938e^-4	0.832	INTERGENIC
3L	8646555	3L_8646555_INS [dm3] 3L_8653455_INS [dm6]	T	TT	3.940e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	24531717	3L_24531717_SNP [dm3] 3L_24538618_SNP [dm6]	C	A	3.941e^-4	0.832	DOWNSTREAM mRpS5 INTRON mRpS5
2L	9251959	2L_9251959_SNP [dm3] 2L_9251959_SNP [dm6]	A	G	3.953e^-4	0.832	SYNONYMOUS_CODING borr UPSTREAM aust & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12830616	2R_12830616_SNP [dm3] 2R_16943111_SNP [dm6]	T	C	3.959e^-4	0.832	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E	TF binding site mE1_TFBS_inv
2R	12563467	2R_12563467_SNP [dm3] 2R_16675962_SNP [dm6]	T	G	3.959e^-4	0.832	INTRON CG30463
2R	10457264	2R_10457264_SNP [dm3] 2R_14569759_SNP [dm6]	G	A	3.960e^-4	0.832	INTRON ttv
X	7905787	X_7905787_SNP [dm3] X_8011754_SNP [dm6]	A	C	3.961e^-4	0.832	INTRON Tbh
3R	14168901	3R_14168901_SNP [dm3] 3R_18343179_SNP [dm6]	A	C	3.962e^-4	0.832	INTRON CG15803
2R	17074656	2R_17074656_SNP [dm3] 2R_21187151_SNP [dm6]	G	T	3.966e^-4	0.832	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	11315077	X_11315077_SNP [dm3] X_11421044_SNP [dm6]	C	G	3.973e^-4	0.832	INTERGENIC
3L	15889351	3L_15889351_SNP [dm3] 3L_15896251_SNP [dm6]	T	G	3.980e^-4	0.832	INTRON pHCl
3L	1465745	3L_1465745_SNP [dm3] 3L_1465745_SNP [dm6]	T	G	3.984e^-4	0.832	NON_SYNONYMOUS_CODING rho INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
3L	420809	3L_420809_SNP [dm3] 3L_420809_SNP [dm6]	C	T	3.985e^-4	0.832	INTERGENIC
X	5980849	X_5980849_SNP [dm3] X_6086816_SNP [dm6]	C	T	3.988e^-4	0.832	NON_SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2764900	2R_2764900_SNP [dm3] 2R_6877395_SNP [dm6]	A	T	4.000e^-4	0.832	INTRON CR44169 & 1 other
2R	2764953	2R_2764953_SNP [dm3] 2R_6877448_SNP [dm6]	T	C	4.000e^-4	0.832	SYNONYMOUS_CODING Spn42Da INTRON CR44169
2L	8798832	2L_8798832_SNP [dm3] 2L_8798832_SNP [dm6]	T	A	4.001e^-4	0.832	INTERGENIC
X	6208047	X_6208047_SNP [dm3] X_6314014_SNP [dm6]	T	C	4.006e^-4	0.832	INTRON CG15894
3L	15884204	3L_15884204_INS [dm3] 3L_15891104_INS [dm6]	C	CCAGACTGTCAAAAG...	4.007e^-4	0.832	INTRON pHCl
3L	14569125	3L_14569125_SNP [dm3] 3L_14576025_SNP [dm6]	T	G	4.008e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da
2L	19313962	2L_19313962_SNP [dm3] 2L_19313962_SNP [dm6]	T	A	4.022e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8612720	3L_8612720_SNP [dm3] 3L_8619620_SNP [dm6]	T	C	4.039e^-4	0.832	UPSTREAM S-Lap2 DOWNSTREAM S-Lap1 INTERGENIC
3L	16279325	3L_16279325_SNP [dm3] 3L_16286225_SNP [dm6]	T	G	4.042e^-4	0.832	UPSTREAM CG13047 INTERGENIC
3R	14059123	3R_14059123_SNP [dm3] 3R_18233401_SNP [dm6]	G	T	4.056e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
2R	9798926	2R_9798926_SNP [dm3] 2R_13911421_SNP [dm6]	C	G	4.058e^-4	0.832	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23042786	3L_23042786_SNP [dm3] 3L_23049686_SNP [dm6]	G	A	4.064e^-4	0.832	INTERGENIC	transposable element FlyBase
3R	16231815	3R_16231815_SNP [dm3] 3R_20406093_SNP [dm6]	T	A	4.065e^-4	0.832	DOWNSTREAM CG4335 INTRON Gfrl
X	3532494	X_3532494_SNP [dm3] X_3638461_SNP [dm6]	G	A	4.082e^-4	0.832	INTRON AstA-R1
3L	5774597	3L_5774597_DEL [dm3] 3L_5781497_DEL [dm6]	AA	A	4.083e^-4	0.832	UTR_5_PRIME PGRP-LD UTR_3_PRIME Pmi UPSTREAM PGRP-LD & 1 other INTRON PGRP-LD & 1 other
3L	12405867	3L_12405867_SNP [dm3] 3L_12412767_SNP [dm6]	C	A	4.086e^-4	0.832	INTRON CG32103
3L	23175690	3L_23175690_DEL [dm3] 3L_23182590_DEL [dm6]	TG	T	4.088e^-4	0.832	INTRON CG34031
3R	17618513	3R_17618513_SNP [dm3] 3R_21792791_SNP [dm6]	A	C	4.090e^-4	0.832	INTRON CASK	TF binding site mE1_TFBS_cad
3L	14569458	3L_14569458_SNP [dm3] 3L_14576358_SNP [dm6]	A	G	4.096e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9143623	2R_9143623_SNP [dm3] 2R_13256118_SNP [dm6]	T	A	4.102e^-4	0.832	UPSTREAM CR44343 & 1 other INTERGENIC
3L	11283497	3L_11283497_SNP [dm3] 3L_11290397_SNP [dm6]	A	G	4.105e^-4	0.832	INTRON CG6175
2R	9614952	2R_9614952_SNP [dm3] 2R_13727447_SNP [dm6]	C	T	4.106e^-4	0.832	INTRON fas
2L	16657019	2L_16657019_SNP [dm3] 2L_16657019_SNP [dm6]	T	A	4.108e^-4	0.832	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9211622	2L_9211622_SNP [dm3] 2L_9211622_SNP [dm6]	A	G	4.114e^-4	0.832	INTRON tai	TF binding site BDTNP1_TFBS_dl
3R	22567858	3R_22567858_SNP [dm3] 3R_26742136_SNP [dm6]	C	G	4.117e^-4	0.832	INTERGENIC
2L	16573613	2L_16573613_SNP [dm3] 2L_16573613_SNP [dm6]	C	T	4.134e^-4	0.832	INTRON CG42389
3L	14205415	3L_14205415_SNP [dm3] 3L_14212315_SNP [dm6]	C	A	4.134e^-4	0.832	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3L	15884208	3L_15884208_SNP [dm3] 3L_15891108_SNP [dm6]	C	T	4.139e^-4	0.832	INTRON pHCl
3L	22498957	3L_22498957_SNP [dm3] 3L_22505857_SNP [dm6]	G	A	4.145e^-4	0.832	UPSTREAM CG43329 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19495910	2R_19495910_SNP [dm3] 2R_23608387_SNP [dm6]	C	T	4.146e^-4	0.832	SYNONYMOUS_CODING CG4019 INTRON CG17664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19603305	2R_19603305_SNP [dm3] 2R_23715782_SNP [dm6]	C	T	4.147e^-4	0.832	INTRON Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6279531	X_6279531_SNP [dm3] X_6385498_SNP [dm6]	C	A	4.149e^-4	0.832	DOWNSTREAM CG33664 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24482123	3R_24482123_SNP [dm3] 3R_28656401_SNP [dm6]	A	G	4.151e^-4	0.832	INTERGENIC
3L	9344992	3L_9344992_SNP [dm3] 3L_9351892_SNP [dm6]	T	G	4.153e^-4	0.832	DOWNSTREAM PGRP-LF INTRON UGP
2R	18241476	2R_18241476_SNP [dm3] 2R_22353971_SNP [dm6]	T	G	4.154e^-4	0.832	INTRON Liprin-gamma
3L	17723143	3L_17723143_SNP [dm3] 3L_17730043_SNP [dm6]	C	T	4.163e^-4	0.832	UPSTREAM CG6052 INTRON Ccn
3R	18101884	3R_18101884_SNP [dm3] 3R_22276162_SNP [dm6]	G	C	4.164e^-4	0.832	INTRON SKIP
3L	15943604	3L_15943604_SNP [dm3] 3L_15950504_SNP [dm6]	C	A	4.167e^-4	0.832	INTRON Pka-C3
3L	12519071	3L_12519071_SNP [dm3] 3L_12525971_SNP [dm6]	A	T	4.173e^-4	0.832	DOWNSTREAM ver INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17766083	3R_17766083_SNP [dm3] 3R_21940361_SNP [dm6]	A	C	4.182e^-4	0.832	INTERGENIC
3L	7329397	3L_7329397_SNP [dm3] 3L_7336297_SNP [dm6]	C	T	4.188e^-4	0.832	SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6678498	3L_6678498_SNP [dm3] 3L_6685398_SNP [dm6]	G	C	4.189e^-4	0.832	INTERGENIC
2R	20225005	2R_20225005_SNP [dm3] 2R_24337482_SNP [dm6]	A	T	4.190e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14695816	3L_14695816_SNP [dm3] 3L_14702716_SNP [dm6]	T	A	4.192e^-4	0.832	INTRON ome
2L	18811826	2L_18811826_SNP [dm3] 2L_18811826_SNP [dm6]	C	T	4.192e^-4	0.832	UPSTREAM CG10570 & 3 others INTERGENIC
3L	995234	3L_995234_SNP [dm3] 3L_995234_SNP [dm6]	T	C	4.197e^-4	0.832	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	9691722	2R_9691722_SNP [dm3] 2R_13804217_SNP [dm6]	G	T	4.206e^-4	0.832	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
2L	11060441	2L_11060441_SNP [dm3] 2L_11060441_SNP [dm6]	G	A	4.213e^-4	0.832	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	5959014	3R_5959014_SNP [dm3] 3R_10133292_SNP [dm6]	C	A	4.214e^-4	0.832	UTR_5_PRIME tws INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16559107	2R_16559107_SNP [dm3] 2R_20671602_SNP [dm6]	C	T	4.218e^-4	0.832	SYNONYMOUS_CODING CG30152 UPSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2674173	3L_2674173_SNP [dm3] 3L_2674173_SNP [dm6]	G	A	4.223e^-4	0.832	INTRON Fife
2L	12293288	2L_12293288_SNP [dm3] 2L_12293288_SNP [dm6]	A	T	4.223e^-4	0.832	INTRON aret	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5035853	X_5035853_SNP [dm3] X_5141820_SNP [dm6]	T	G	4.226e^-4	0.832	INTRON rg & 1 other
3L	15943155	3L_15943155_DEL [dm3] 3L_15950055_DEL [dm6]	AGCCA	A	4.226e^-4	0.832	INTRON Pka-C3
2R	6790620	2R_6790620_SNP [dm3] 2R_10903115_SNP [dm6]	A	G	4.227e^-4	0.832	UPSTREAM CG12943 INTERGENIC
X	8437018	X_8437018_INS [dm3] X_8542985_INS [dm6]	G	GCGCAGT	4.232e^-4	0.832	INTRON Nrg
3R	14059169	3R_14059169_SNP [dm3] 3R_18233447_SNP [dm6]	A	C	4.233e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
2R	16299358	2R_16299358_DEL [dm3] 2R_20411853_DEL [dm6]	GCTG	G	4.235e^-4	0.832	INTERGENIC
3L	5910990	3L_5910990_SNP [dm3] 3L_5917890_SNP [dm6]	A	G	4.237e^-4	0.832	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
3R	27492812	3R_27492812_SNP [dm3] 3R_31667090_SNP [dm6]	C	T	4.243e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16012549	3L_16012549_SNP [dm3] 3L_16019449_SNP [dm6]	T	G	4.246e^-4	0.832	DOWNSTREAM CR43949 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5375582	3L_5375582_SNP [dm3] 3L_5382482_SNP [dm6]	T	A	4.258e^-4	0.832	NON_SYNONYMOUS_CODING Ir64a
3L	1720060	3L_1720060_SNP [dm3] 3L_1720060_SNP [dm6]	G	A	4.261e^-4	0.832	SYNONYMOUS_CODING drpr DOWNSTREAM CG18171 INTRON drpr	TF binding site mE1_TFBS_chinmo
3L	24533085	3L_24533085_SNP [dm3] 3L_24539985_SNP [dm6]	T	A	4.264e^-4	0.832	INTRON mRpS5
3L	9172590	3L_9172590_SNP [dm3] 3L_9179490_SNP [dm6]	C	T	4.268e^-4	0.832	UPSTREAM Rdl INTRON Rdl	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9326594	2R_9326594_SNP [dm3] 2R_13439089_SNP [dm6]	T	A	4.269e^-4	0.832	UPSTREAM CG42321 DOWNSTREAM cnn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3484347	2L_3484347_SNP [dm3] 2L_3484347_SNP [dm6]	A	C	4.273e^-4	0.832	INTRON CG15414
2L	13506755	2L_13506755_SNP [dm3] 2L_13506755_SNP [dm6]	T	G	4.281e^-4	0.832	INTRON B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17895998	3L_17895998_SNP [dm3] 3L_17902898_SNP [dm6]	A	C	4.284e^-4	0.832	INTRON Prestin
2L	19999297	2L_19999297_SNP [dm3] 2L_19999297_SNP [dm6]	T	C	4.292e^-4	0.832	DOWNSTREAM CR44908 INTRON CG43861
3L	14210674	3L_14210674_SNP [dm3] 3L_14217574_SNP [dm6]	C	T	4.295e^-4	0.832	UPSTREAM CG7768 INTRON nuf
3R	10708193	3R_10708193_SNP [dm3] 3R_14882471_SNP [dm6]	A	T	4.308e^-4	0.832	UTR_3_PRIME CG3631 DOWNSTREAM Rrp6
2R	7020357	2R_7020357_SNP [dm3] 2R_11132852_SNP [dm6]	T	A	4.309e^-4	0.832	INTERGENIC
X	20850296	X_20850296_SNP [dm3] X_20979269_SNP [dm6]	G	A	4.327e^-4	0.832	DOWNSTREAM CG44426 INTERGENIC
3L	14569238	3L_14569238_SNP [dm3] 3L_14576138_SNP [dm6]	T	G	4.331e^-4	0.832	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9010701	2R_9010701_SNP [dm3] 2R_13123196_SNP [dm6]	T	G	4.337e^-4	0.832	SYNONYMOUS_CODING CG13325
3L	9716238	3L_9716238_SNP [dm3] 3L_9723138_SNP [dm6]	A	C	4.338e^-4	0.832	UTR_5_PRIME nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5223530	3L_5223530_DEL [dm3] 3L_5230430_DEL [dm6]	CAGCAGC	C	4.343e^-4	0.832	INTRON shep
3R	24576075	3R_24576075_SNP [dm3] 3R_28750353_SNP [dm6]	G	A	4.344e^-4	0.832	INTRON CG10000	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13024912	3L_13024912_SNP [dm3] 3L_13031812_SNP [dm6]	C	T	4.348e^-4	0.832	DOWNSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3R	18019926	3R_18019926_SNP [dm3] 3R_22194204_SNP [dm6]	C	T	4.350e^-4	0.832	DOWNSTREAM CR45224 INTRON SKIP	TF binding site mE1_TFBS_cad
3L	14966150	3L_14966150_SNP [dm3] 3L_14973050_SNP [dm6]	T	A	4.353e^-4	0.832	UTR_3_PRIME Brd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5390782	3R_5390782_SNP [dm3] 3R_9565060_SNP [dm6]	A	G	4.373e^-4	0.832	SYNONYMOUS_CODING Vps45	TF binding site mE1_TFBS_sens
3L	423335	3L_423335_SNP [dm3] 3L_423335_SNP [dm6]	A	C	4.377e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15737389	3L_15737389_SNP [dm3] 3L_15744289_SNP [dm6]	G	A	4.377e^-4	0.832	INTERGENIC
3L	23048107	3L_23048107_SNP [dm3] 3L_23055007_SNP [dm6]	A	C	4.378e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5449864	3R_5449864_SNP [dm3] 3R_9624142_SNP [dm6]	T	A	4.379e^-4	0.832	NON_SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7697004	2R_7697004_SNP [dm3] 2R_11809499_SNP [dm6]	A	C	4.398e^-4	0.832	INTRON ths
2R	7697014	2R_7697014_DEL [dm3] 2R_11809509_DEL [dm6]	CATTAAATTTTCGCTTTA...	C	4.398e^-4	0.832	INTRON ths
2R	7697051	2R_7697051_SNP [dm3] 2R_11809546_SNP [dm6]	A	C	4.398e^-4	0.832	INTRON ths
2R	7697052	2R_7697052_INS [dm3] 2R_11809547_INS [dm6]	T	TTAC	4.398e^-4	0.832	INTRON ths
3L	7518611	3L_7518611_DEL [dm3] 3L_7525511_DEL [dm6]	TTAGAATTA	T	4.407e^-4	0.832	INTRON ltl
3L	7959030	3L_7959030_DEL [dm3] 3L_7965930_DEL [dm6]	CACCGCAAATTTTTGCTTTG...	C	4.422e^-4	0.832	INTERGENIC
2R	19402896	2R_19402896_SNP [dm3] 2R_23515373_SNP [dm6]	G	A	4.425e^-4	0.832	INTERGENIC
2L	9948307	2L_9948307_SNP [dm3] 2L_9948307_SNP [dm6]	G	C	4.425e^-4	0.832	UPSTREAM CG5853 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18538852	3L_18538852_SNP [dm3] 3L_18545752_SNP [dm6]	C	T	4.434e^-4	0.832	INTERGENIC
3L	4636097	3L_4636097_SNP [dm3] 3L_4636097_SNP [dm6]	G	A	4.455e^-4	0.832	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
2L	6464351	2L_6464351_SNP [dm3] 2L_6464351_SNP [dm6]	A	G	4.462e^-4	0.832	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16302698	3L_16302698_SNP [dm3] 3L_16309598_SNP [dm6]	T	C	4.467e^-4	0.832	INTRON CR32160
2L	2935954	2L_2935954_SNP [dm3] 2L_2935954_SNP [dm6]	A	T	4.469e^-4	0.832	INTRON lilli
3L	17768314	3L_17768314_SNP [dm3] 3L_17775214_SNP [dm6]	C	T	4.472e^-4	0.832	INTERGENIC
3L	15884211	3L_15884211_SNP [dm3] 3L_15891111_SNP [dm6]	T	G	4.475e^-4	0.832	INTRON pHCl
3R	2733654	3R_2733654_SNP [dm3] 3R_6907932_SNP [dm6]	G	T	4.478e^-4	0.832	UTR_3_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
X	22298807	X_22298807_SNP [dm3] X_22896971_SNP [dm6]	C	T	4.481e^-4	0.832	INTERGENIC	transposable element FlyBase
X	2874472	X_2874472_DEL [dm3] X_2980439_DEL [dm6]	AT	A	4.489e^-4	0.832	INTRON kirre	regulatory region REDfly_CRMs
2R	15550032	2R_15550032_SNP [dm3] 2R_19662527_SNP [dm6]	T	G	4.489e^-4	0.832	UTR_5_PRIME CG11018 UPSTREAM mir-3 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16822628	3R_16822628_SNP [dm3] 3R_20996906_SNP [dm6]	G	A	4.490e^-4	0.832	INTRON Calx
X	17243971	X_17243971_SNP [dm3] X_17349938_SNP [dm6]	C	T	4.503e^-4	0.832	INTERGENIC
2L	3587900	2L_3587900_SNP [dm3] 2L_3587900_SNP [dm6]	G	A	4.510e^-4	0.832	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9959091	2R_9959091_SNP [dm3] 2R_14071586_SNP [dm6]	G	A	4.520e^-4	0.832	INTRON Prosap
3L	9948936	3L_9948936_SNP [dm3] 3L_9955836_SNP [dm6]	C	T	4.524e^-4	0.832	INTRON CG34356
2L	6020821	2L_6020821_SNP [dm3] 2L_6020821_SNP [dm6]	C	G	4.530e^-4	0.832	UPSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8898160	2L_8898160_SNP [dm3] 2L_8898160_SNP [dm6]	T	C	4.534e^-4	0.832	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_Trl
4	387773	4_387773_SNP [dm3] 4_367147_SNP [dm6]	T	C	4.539e^-4	0.832	INTRON Hcf
X	3427591	X_3427591_SNP [dm3] X_3533558_SNP [dm6]	G	A	4.540e^-4	0.832	INTRON CG32791
3L	18816485	3L_18816485_SNP [dm3] 3L_18823385_SNP [dm6]	A	T	4.546e^-4	0.832	INTRON Cat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	23020706	3L_23020706_SNP [dm3] 3L_23027606_SNP [dm6]	T	A	4.548e^-4	0.832	INTRON nrm
X	3514235	X_3514235_DEL [dm3] X_3620202_DEL [dm6]	AC	A	4.578e^-4	0.832	INTRON AstA-R1
3R	5688122	3R_5688122_SNP [dm3] 3R_9862400_SNP [dm6]	T	G	4.578e^-4	0.832	INTRON Teh1

By genomic position
Variant impact
Gene name

idx_Surv_10MeHg_CAFF phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results