DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.822e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2516 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16290821	2R_16290821_SNP [dm3] 2R_20403316_SNP [dm6]	C	T	1.360e^-6	0.624	INTERGENIC
2R	14762500	2R_14762500_SNP [dm3] 2R_18874995_SNP [dm6]	A	C	1.380e^-6	0.624	INTERGENIC
3L	23033953	3L_23033953_SNP [dm3] 3L_23040853_SNP [dm6]	T	A	1.509e^-6	0.624	DOWNSTREAM nrm INTERGENIC
3R	10766286	3R_10766286_SNP [dm3] 3R_14940564_SNP [dm6]	G	C	1.984e^-6	0.624	INTERGENIC
2R	17299063	2R_17299063_SNP [dm3] 2R_21411558_SNP [dm6]	A	G	2.098e^-6	0.624	INTRON Sdc
2L	12285953	2L_12285953_SNP [dm3] 2L_12285953_SNP [dm6]	G	T	2.357e^-6	0.624	INTRON aret
2R	14762345	2R_14762345_SNP [dm3] 2R_18874840_SNP [dm6]	C	A	4.005e^-6	0.624	INTERGENIC
3L	8875006	3L_8875006_DEL [dm3] 3L_8881906_DEL [dm6]	CC	C	4.273e^-6	0.624	INTRON dally
3L	996409	3L_996409_SNP [dm3] 3L_996409_SNP [dm6]	T	C	5.442e^-6	0.624	UTR_3_PRIME trio DOWNSTREAM CG12038 & 1 other
2L	9463981	2L_9463981_SNP [dm3] 2L_9463981_SNP [dm6]	A	G	6.240e^-6	0.624	UTR_3_PRIME numb DOWNSTREAM numb
3L	15886584	3L_15886584_SNP [dm3] 3L_15893484_SNP [dm6]	G	A	6.346e^-6	0.624	INTRON pHCl
2L	7812417	2L_7812417_SNP [dm3] 2L_7812417_SNP [dm6]	C	A	6.440e^-6	0.624	INTRON LanB1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15284967	3L_15284967_SNP [dm3] 3L_15291867_SNP [dm6]	G	C	7.110e^-6	0.624	INTERGENIC
2L	4023666	2L_4023666_SNP [dm3] 2L_4023666_SNP [dm6]	G	A	7.272e^-6	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7330950	3L_7330950_SNP [dm3] 3L_7337850_SNP [dm6]	T	C	7.459e^-6	0.624	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15240481	3R_15240481_SNP [dm3] 3R_19414759_SNP [dm6]	T	C	7.498e^-6	0.624	INTRON CG31221
3L	4174670	3L_4174670_SNP [dm3] 3L_4174670_SNP [dm6]	G	C	7.806e^-6	0.624	SPLICE_SITE_REGION CG18675 DOWNSTREAM Ero1L & 1 other INTRON CG18675
3L	7221362	3L_7221362_SNP [dm3] 3L_7228262_SNP [dm6]	A	G	8.063e^-6	0.624	INTERGENIC
3R	15240427	3R_15240427_SNP [dm3] 3R_19414705_SNP [dm6]	C	G	8.114e^-6	0.624	INTRON CG31221
3L	15881100	3L_15881100_SNP [dm3] 3L_15888000_SNP [dm6]	A	G	8.367e^-6	0.624	INTRON pHCl
2R	15038134	2R_15038134_SNP [dm3] 2R_19150629_SNP [dm6]	T	A	8.522e^-6	0.624	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7331186	3L_7331186_SNP [dm3] 3L_7338086_SNP [dm6]	C	T	9.201e^-6	0.624	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8699375	3L_8699375_SNP [dm3] 3L_8706275_SNP [dm6]	C	T	9.770e^-6	0.624	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13946850	2R_13946850_SNP [dm3] 2R_18059345_SNP [dm6]	A	G	1.028e^-5	0.624	UPSTREAM CR45314 INTERGENIC
2R	16173632	2R_16173632_SNP [dm3] 2R_20286127_SNP [dm6]	T	C	1.042e^-5	0.624	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3L	2392244	3L_2392244_SNP [dm3] 3L_2392244_SNP [dm6]	A	C	1.055e^-5	0.624	INTRON CG45186
2L	12280030	2L_12280030_SNP [dm3] 2L_12280030_SNP [dm6]	C	A	1.151e^-5	0.624	INTRON aret
2L	9463006	2L_9463006_SNP [dm3] 2L_9463006_SNP [dm6]	T	G	1.216e^-5	0.624	UTR_3_PRIME numb
3L	995303	3L_995303_SNP [dm3] 3L_995303_SNP [dm6]	C	T	1.279e^-5	0.624	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3R	11596080	3R_11596080_SNP [dm3] 3R_15770358_SNP [dm6]	A	T	1.343e^-5	0.624	INTERGENIC
X	11627399	X_11627399_SNP [dm3] X_11733366_SNP [dm6]	T	A	1.396e^-5	0.624	UPSTREAM inaF-B INTRON CG15221 & 1 other
X	11627405	X_11627405_SNP [dm3] X_11733372_SNP [dm6]	G	T	1.431e^-5	0.624	UPSTREAM inaF-B INTRON CG15221 & 1 other
X	11627415	X_11627415_SNP [dm3] X_11733382_SNP [dm6]	C	T	1.483e^-5	0.624	UPSTREAM inaF-B INTRON CG15221 & 1 other
3L	4174699	3L_4174699_SNP [dm3] 3L_4174699_SNP [dm6]	T	C	1.509e^-5	0.624	DOWNSTREAM Ero1L & 1 other INTRON CG18675
2L	17563702	2L_17563702_SNP [dm3] 2L_17563702_SNP [dm6]	G	A	1.528e^-5	0.624	INTERGENIC
3L	7799372	3L_7799372_SNP [dm3] 3L_7806272_SNP [dm6]	T	G	1.546e^-5	0.624	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	14093531	3R_14093531_SNP [dm3] 3R_18267809_SNP [dm6]	G	C	1.551e^-5	0.624	UTR_5_PRIME CG18599	TF binding site mE1_TFBS_run
2L	9551241	2L_9551241_SNP [dm3] 2L_9551241_SNP [dm6]	C	G	1.780e^-5	0.624	UPSTREAM jp INTRON jp
X	6208047	X_6208047_SNP [dm3] X_6314014_SNP [dm6]	T	C	1.801e^-5	0.624	INTRON CG15894
3L	4709865	3L_4709865_SNP [dm3] 3L_4709865_SNP [dm6]	T	C	1.812e^-5	0.624	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4709870	3L_4709870_SNP [dm3] 3L_4709870_SNP [dm6]	A	C	1.812e^-5	0.624	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8874976	3L_8874976_MNP [dm3] 3L_8881876_MNP [dm6]	CAT	TGA	1.818e^-5	0.624	INTRON dally
3L	8875004	3L_8875004_SNP [dm3] 3L_8881904_SNP [dm6]	T	C	1.818e^-5	0.624	INTRON dally
X	12990471	X_12990471_SNP [dm3] X_13096438_SNP [dm6]	A	T	2.032e^-5	0.624	UTR_3_PRIME CG43313 DOWNSTREAM CG2200	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7484924	2L_7484924_SNP [dm3] 2L_7484924_SNP [dm6]	G	C	2.033e^-5	0.624	INTRON Ziz
2R	17092769	2R_17092769_SNP [dm3] 2R_21205264_SNP [dm6]	T	C	2.034e^-5	0.624	SYNONYMOUS_CODING Glycogenin INTRON CG44245
2R	16173290	2R_16173290_SNP [dm3] 2R_20285785_SNP [dm6]	T	C	2.037e^-5	0.624	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14072021	2R_14072021_SNP [dm3] 2R_18184516_SNP [dm6]	C	T	2.056e^-5	0.624	UTR_3_PRIME CG33958 UPSTREAM CG5721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17116102	2R_17116102_SNP [dm3] 2R_21228597_SNP [dm6]	A	G	2.091e^-5	0.624	INTRON ASPP
2R	16173650	2R_16173650_SNP [dm3] 2R_20286145_SNP [dm6]	T	C	2.215e^-5	0.624	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3R	9738642	3R_9738642_SNP [dm3] 3R_13912920_SNP [dm6]	T	G	2.238e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_inv
2L	18501185	2L_18501185_SNP [dm3] 2L_18501185_SNP [dm6]	A	C	2.267e^-5	0.624	UTR_5_PRIME kon UPSTREAM kon	TF binding site BDTNP1_TFBS_da
3L	14941736	3L_14941736_SNP [dm3] 3L_14948636_SNP [dm6]	G	A	2.289e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	15205607	2R_15205607_SNP [dm3] 2R_19318102_SNP [dm6]	A	G	2.306e^-5	0.624	SYNONYMOUS_CODING Rgk1
2L	10521817	2L_10521817_SNP [dm3] 2L_10521817_SNP [dm6]	A	T	2.339e^-5	0.624	INTERGENIC
2R	16020141	2R_16020141_SNP [dm3] 2R_20132636_SNP [dm6]	C	T	2.359e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5160017	2L_5160017_SNP [dm3] 2L_5160017_SNP [dm6]	G	T	2.398e^-5	0.624	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	9143623	2R_9143623_SNP [dm3] 2R_13256118_SNP [dm6]	T	A	2.417e^-5	0.624	UPSTREAM CR44343 & 1 other INTERGENIC
3L	8070513	3L_8070513_SNP [dm3] 3L_8077413_SNP [dm6]	T	A	2.420e^-5	0.624	UTR_5_PRIME Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
2R	12008938	2R_12008938_SNP [dm3] 2R_16121433_SNP [dm6]	G	A	2.475e^-5	0.624	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
2L	16381665	2L_16381665_SNP [dm3] 2L_16381665_SNP [dm6]	T	A	2.487e^-5	0.624	INTERGENIC
3L	15055734	3L_15055734_SNP [dm3] 3L_15062634_SNP [dm6]	T	C	2.490e^-5	0.624	UPSTREAM CG13460 & 1 other INTRON Sytbeta
3L	10757529	3L_10757529_SNP [dm3] 3L_10764429_SNP [dm6]	G	T	2.581e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9551242	2L_9551242_SNP [dm3] 2L_9551242_SNP [dm6]	G	T	2.656e^-5	0.624	UPSTREAM jp INTRON jp
X	14686048	X_14686048_SNP [dm3] X_14792015_SNP [dm6]	A	G	2.659e^-5	0.624	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147190	2R_9147190_SNP [dm3] 2R_13259685_SNP [dm6]	G	A	2.704e^-5	0.624	UPSTREAM CG42319 INTERGENIC
2R	16418053	2R_16418053_SNP [dm3] 2R_20530548_SNP [dm6]	G	T	2.727e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3532494	X_3532494_SNP [dm3] X_3638461_SNP [dm6]	G	A	2.738e^-5	0.624	INTRON AstA-R1
2L	9463504	2L_9463504_SNP [dm3] 2L_9463504_SNP [dm6]	A	C	2.746e^-5	0.624	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	3576103	2R_3576103_SNP [dm3] 2R_7688598_SNP [dm6]	G	T	2.786e^-5	0.624	INTRON CG1399
2R	10482470	2R_10482470_SNP [dm3] 2R_14594965_SNP [dm6]	C	T	2.835e^-5	0.624	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2R	16175402	2R_16175402_SNP [dm3] 2R_20287897_SNP [dm6]	C	T	2.836e^-5	0.624	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	8129610	2R_8129610_SNP [dm3] 2R_12242105_SNP [dm6]	T	C	2.857e^-5	0.624	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3R	1904450	3R_1904450_SNP [dm3] 3R_6078728_SNP [dm6]	C	T	2.861e^-5	0.624	UPSTREAM Or83c INTERGENIC
X	5449728	X_5449728_SNP [dm3] X_5555695_SNP [dm6]	C	A	2.865e^-5	0.624	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
X	14685801	X_14685801_SNP [dm3] X_14791768_SNP [dm6]	C	T	2.932e^-5	0.624	NON_SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
3L	7799375	3L_7799375_SNP [dm3] 3L_7806275_SNP [dm6]	C	T	2.991e^-5	0.624	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	17923393	X_17923393_SNP [dm3] X_18029360_SNP [dm6]	G	T	2.996e^-5	0.624	INTRON Sh
X	8957546	X_8957546_SNP [dm3] X_9063513_SNP [dm6]	A	T	3.002e^-5	0.624	INTRON CG15365
2L	9551237	2L_9551237_SNP [dm3] 2L_9551237_SNP [dm6]	A	C	3.028e^-5	0.624	UPSTREAM jp INTRON jp
3R	14196704	3R_14196704_SNP [dm3] 3R_18370982_SNP [dm6]	C	T	3.064e^-5	0.624	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13838051	2R_13838051_SNP [dm3] 2R_17950546_SNP [dm6]	T	A	3.185e^-5	0.624	INTERGENIC
3L	12851980	3L_12851980_SNP [dm3] 3L_12858880_SNP [dm6]	G	A	3.189e^-5	0.624	SYNONYMOUS_CODING CG32107
2R	17809823	2R_17809823_SNP [dm3] 2R_21922318_SNP [dm6]	C	T	3.191e^-5	0.624	INTRON Fili
X	16153547	X_16153547_SNP [dm3] X_16259514_SNP [dm6]	G	A	3.262e^-5	0.624	INTERGENIC
3L	9424248	3L_9424248_SNP [dm3] 3L_9431148_SNP [dm6]	A	G	3.265e^-5	0.624	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10766469	3R_10766469_SNP [dm3] 3R_14940747_SNP [dm6]	A	T	3.313e^-5	0.624	INTERGENIC
3R	10766223	3R_10766223_SNP [dm3] 3R_14940501_SNP [dm6]	C	A	3.317e^-5	0.624	INTERGENIC
2R	11764104	2R_11764104_SNP [dm3] 2R_15876599_SNP [dm6]	G	T	3.338e^-5	0.624	INTRON sli	TF binding site BDTNP1_TFBS_da
2R	16101472	2R_16101472_SNP [dm3] 2R_20213967_SNP [dm6]	A	G	3.389e^-5	0.624	INTERGENIC
2R	14340002	2R_14340002_SNP [dm3] 2R_18452497_SNP [dm6]	C	T	3.394e^-5	0.624	SYNONYMOUS_CODING CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2477618	X_2477618_SNP [dm3] X_2583585_SNP [dm6]	C	G	3.424e^-5	0.624	SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9460876	2L_9460876_SNP [dm3] 2L_9460876_SNP [dm6]	C	A	3.535e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	995306	3L_995306_SNP [dm3] 3L_995306_SNP [dm6]	A	C	3.663e^-5	0.624	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	9146522	2R_9146522_SNP [dm3] 2R_13259017_SNP [dm6]	C	G	3.698e^-5	0.624	DOWNSTREAM CG10799 INTERGENIC
2L	9464032	2L_9464032_SNP [dm3] 2L_9464032_SNP [dm6]	G	A	3.702e^-5	0.624	UTR_3_PRIME numb DOWNSTREAM numb
3L	2392197	3L_2392197_SNP [dm3] 3L_2392197_SNP [dm6]	C	A	3.719e^-5	0.624	INTRON CG45186
3L	15284947	3L_15284947_SNP [dm3] 3L_15291847_SNP [dm6]	C	A	3.724e^-5	0.624	INTERGENIC
2R	19164428	2R_19164428_SNP [dm3] 2R_23276905_SNP [dm6]	T	G	3.728e^-5	0.624	INTERGENIC
X	17243971	X_17243971_SNP [dm3] X_17349938_SNP [dm6]	C	T	3.730e^-5	0.624	INTERGENIC
X	8173413	X_8173413_DEL [dm3] X_8279380_DEL [dm6]	GAAATGG	G	3.794e^-5	0.624	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA
2R	10171349	2R_10171349_SNP [dm3] 2R_14283844_SNP [dm6]	G	C	3.801e^-5	0.624	INTRON Ih	TF binding site mE1_TFBS_cad
2R	16326348	2R_16326348_SNP [dm3] 2R_20438843_SNP [dm6]	A	T	3.825e^-5	0.624	INTRON CG12484
2R	19601518	2R_19601518_SNP [dm3] 2R_23713995_SNP [dm6]	C	T	3.861e^-5	0.624	UTR_5_PRIME Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9460806	2L_9460806_DEL [dm3] 2L_9460806_DEL [dm6]	AGAA	A	3.906e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9460885	2L_9460885_DEL [dm3] 2L_9460885_DEL [dm6]	CCTTCATCTA	C	3.906e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	21995881	3L_21995881_SNP [dm3] 3L_22002781_SNP [dm6]	G	A	3.909e^-5	0.624	INTERGENIC
2R	9147337	2R_9147337_SNP [dm3] 2R_13259832_SNP [dm6]	G	C	3.943e^-5	0.624	UPSTREAM CG42319 INTERGENIC
2R	16418057	2R_16418057_SNP [dm3] 2R_20530552_SNP [dm6]	T	A	3.988e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16175596	2R_16175596_SNP [dm3] 2R_20288091_SNP [dm6]	C	T	4.024e^-5	0.624	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	9146968	2R_9146968_SNP [dm3] 2R_13259463_SNP [dm6]	T	C	4.036e^-5	0.624	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
2R	16020062	2R_16020062_SNP [dm3] 2R_20132557_SNP [dm6]	G	A	4.052e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8675181	3L_8675181_SNP [dm3] 3L_8682081_SNP [dm6]	G	A	4.106e^-5	0.624	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	17315103	2R_17315103_SNP [dm3] 2R_21427598_SNP [dm6]	G	C	4.108e^-5	0.624	INTRON Sdc
2R	3836762	2R_3836762_SNP [dm3] 2R_7949257_SNP [dm6]	T	A	4.125e^-5	0.624	UPSTREAM CG11165 INTRON CG14764	TF binding site BDTNP1_TFBS_da
3L	21292727	3L_21292727_SNP [dm3] 3L_21299627_SNP [dm6]	C	G	4.227e^-5	0.624	UPSTREAM Cpr78Cc DOWNSTREAM CG43702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3L	995138	3L_995138_SNP [dm3] 3L_995138_SNP [dm6]	C	T	4.247e^-5	0.624	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3R	8049961	3R_8049961_DEL [dm3] 3R_12224239_DEL [dm6]	AATCTATGATC...	A	4.255e^-5	0.624	DOWNSTREAM CG10014 INTRON CG17404	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9445624	2L_9445624_SNP [dm3] 2L_9445624_SNP [dm6]	G	T	4.369e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	9738831	3R_9738831_SNP [dm3] 3R_13913109_SNP [dm6]	C	T	4.378e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11598592	3R_11598592_SNP [dm3] 3R_15772870_SNP [dm6]	A	G	4.403e^-5	0.624	INTERGENIC
2R	16418068	2R_16418068_SNP [dm3] 2R_20530563_SNP [dm6]	G	T	4.434e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25919979	3R_25919979_SNP [dm3] 3R_30094257_SNP [dm6]	T	G	4.483e^-5	0.624	INTRON sima	TF binding site mE1_TFBS_inv
2R	11586198	2R_11586198_SNP [dm3] 2R_15698693_SNP [dm6]	C	T	4.534e^-5	0.624	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	3840024	2R_3840024_SNP [dm3] 2R_7952519_SNP [dm6]	C	T	4.549e^-5	0.624	INTRON CG14764
3R	5798597	3R_5798597_SNP [dm3] 3R_9972875_SNP [dm6]	T	A	4.572e^-5	0.624	INTRON Glut4EF
3L	12507342	3L_12507342_SNP [dm3] 3L_12514242_SNP [dm6]	G	T	4.600e^-5	0.624	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	7799380	3L_7799380_SNP [dm3] 3L_7806280_SNP [dm6]	G	A	4.641e^-5	0.624	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	19786008	2R_19786008_SNP [dm3] 2R_23898485_SNP [dm6]	T	A	4.651e^-5	0.624	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3512030	2R_3512030_SNP [dm3] 2R_7624525_SNP [dm6]	A	C	4.675e^-5	0.624	INTRON CG43340
2R	17693774	2R_17693774_SNP [dm3] 2R_21806269_SNP [dm6]	G	A	4.777e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_kn
2L	8995235	2L_8995235_SNP [dm3] 2L_8995235_SNP [dm6]	A	G	4.806e^-5	0.624	NON_SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien
3L	12661327	3L_12661327_SNP [dm3] 3L_12668227_SNP [dm6]	G	A	4.821e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16019985	2R_16019985_SNP [dm3] 2R_20132480_SNP [dm6]	C	G	4.868e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	995863	3L_995863_SNP [dm3] 3L_995863_SNP [dm6]	G	T	4.941e^-5	0.624	DOWNSTREAM trio & 1 other INTERGENIC
2L	9445625	2L_9445625_SNP [dm3] 2L_9445625_SNP [dm6]	C	T	4.982e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	15760939	2L_15760939_SNP [dm3] 2L_15760939_SNP [dm6]	G	C	5.070e^-5	0.624	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	5475926	2R_5475926_SNP [dm3] 2R_9588421_SNP [dm6]	G	A	5.218e^-5	0.624	NON_SYNONYMOUS_CODING clos UPSTREAM CG1827 DOWNSTREAM RpL31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16418064	2R_16418064_SNP [dm3] 2R_20530559_SNP [dm6]	T	G	5.235e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5449785	X_5449785_SNP [dm3] X_5555752_SNP [dm6]	G	A	5.235e^-5	0.624	INTRON Vsx2	TF binding site mE1_TFBS_Kr
X	16162256	X_16162256_SNP [dm3] X_16268223_SNP [dm6]	T	A	5.287e^-5	0.624	INTRON kat80
2L	15359234	2L_15359234_SNP [dm3] 2L_15359234_SNP [dm6]	C	G	5.318e^-5	0.624	INTERGENIC
2L	7812421	2L_7812421_SNP [dm3] 2L_7812421_SNP [dm6]	A	G	5.388e^-5	0.624	INTRON LanB1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17158081	2R_17158081_SNP [dm3] 2R_21270576_SNP [dm6]	A	T	5.403e^-5	0.624	INTRON Rgk3
2L	15627128	2L_15627128_SNP [dm3] 2L_15627128_SNP [dm6]	G	C	5.412e^-5	0.624	INTERGENIC
3R	17263951	3R_17263951_SNP [dm3] 3R_21438229_SNP [dm6]	G	A	5.465e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	10442905	2L_10442905_DEL [dm3] 2L_10442905_DEL [dm6]	TG	T	5.473e^-5	0.624	UPSTREAM CR45375 INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9464758	2L_9464758_SNP [dm3] 2L_9464758_SNP [dm6]	T	C	5.516e^-5	0.624	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17102795	2R_17102795_SNP [dm3] 2R_21215290_SNP [dm6]	C	G	5.591e^-5	0.624	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
2R	15994493	2R_15994493_SNP [dm3] 2R_20106988_SNP [dm6]	C	G	5.627e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8351860	2L_8351860_SNP [dm3] 2L_8351860_SNP [dm6]	G	A	5.648e^-5	0.624	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2R	19488592	2R_19488592_SNP [dm3] 2R_23601069_SNP [dm6]	T	G	5.668e^-5	0.624	NON_SYNONYMOUS_CODING IM18 UTR_3_PRIME CG10332 UPSTREAM CG42559 & 1 other DOWNSTREAM CG43209	TF binding site mE1_TFBS_cad
3L	995871	3L_995871_SNP [dm3] 3L_995871_SNP [dm6]	C	G	5.711e^-5	0.624	DOWNSTREAM trio & 1 other INTERGENIC
X	17244025	X_17244025_SNP [dm3] X_17349992_SNP [dm6]	A	T	5.714e^-5	0.624	INTERGENIC
2R	9147240	2R_9147240_SNP [dm3] 2R_13259735_SNP [dm6]	G	T	5.810e^-5	0.624	UPSTREAM CG42319 INTERGENIC
2R	17102870	2R_17102870_SNP [dm3] 2R_21215365_SNP [dm6]	T	C	5.830e^-5	0.624	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
3R	9246270	3R_9246270_SNP [dm3] 3R_13420548_SNP [dm6]	A	G	5.894e^-5	0.624	SYNONYMOUS_CODING Ir87a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24205174	3R_24205174_SNP [dm3] 3R_28379452_SNP [dm6]	A	G	5.946e^-5	0.624	INTERGENIC
2L	4505507	2L_4505507_SNP [dm3] 2L_4505507_SNP [dm6]	G	A	5.978e^-5	0.624	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11490748	2L_11490748_SNP [dm3] 2L_11490748_SNP [dm6]	C	T	6.036e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7799586	3L_7799586_SNP [dm3] 3L_7806486_SNP [dm6]	G	C	6.059e^-5	0.624	INTRON CG32369	TF binding site mE1_TFBS_Trl
3L	995141	3L_995141_SNP [dm3] 3L_995141_SNP [dm6]	C	G	6.100e^-5	0.624	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2L	14865125	2L_14865125_SNP [dm3] 2L_14865125_SNP [dm6]	A	C	6.112e^-5	0.624	INTERGENIC
3R	24205494	3R_24205494_SNP [dm3] 3R_28379772_SNP [dm6]	T	G	6.153e^-5	0.624	INTERGENIC
3R	25514989	3R_25514989_SNP [dm3] 3R_29689267_SNP [dm6]	T	G	6.164e^-5	0.624	UTR_5_PRIME Obp99c
3R	11598617	3R_11598617_SNP [dm3] 3R_15772895_SNP [dm6]	A	T	6.199e^-5	0.624	INTERGENIC
2R	11732122	2R_11732122_SNP [dm3] 2R_15844617_SNP [dm6]	A	G	6.201e^-5	0.624	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_sens
2R	11587511	2R_11587511_SNP [dm3] 2R_15700006_SNP [dm6]	T	C	6.207e^-5	0.624	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18364980	3L_18364980_SNP [dm3] 3L_18371880_SNP [dm6]	C	T	6.220e^-5	0.624	INTERGENIC
X	14808045	X_14808045_SNP [dm3] X_14914012_SNP [dm6]	A	G	6.237e^-5	0.624	UPSTREAM CG12398 INTRON Flo2
3R	25930445	3R_25930445_SNP [dm3] 3R_30104723_SNP [dm6]	C	A	6.249e^-5	0.624	NON_SYNONYMOUS_CODING sima UTR_5_PRIME sima INTRON sima
3L	14944925	3L_14944925_SNP [dm3] 3L_14951825_SNP [dm6]	G	A	6.255e^-5	0.624	INTERGENIC	transposable element FlyBase
2L	3888982	2L_3888982_SNP [dm3] 2L_3888982_SNP [dm6]	C	T	6.258e^-5	0.624	UPSTREAM capu INTRON capu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11837033	2L_11837033_SNP [dm3] 2L_11837033_SNP [dm6]	A	G	6.284e^-5	0.624	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
3R	25795598	3R_25795598_SNP [dm3] 3R_29969876_SNP [dm6]	C	G	6.311e^-5	0.624	UPSTREAM TkR99D INTERGENIC
3R	3092002	3R_3092002_DEL [dm3] 3R_7266280_DEL [dm6]	TT	T	6.389e^-5	0.624	UPSTREAM Gld INTRON Syt4	TF binding site BDTNP1_TFBS_twi
2L	11837032	2L_11837032_SNP [dm3] 2L_11837032_SNP [dm6]	C	T	6.415e^-5	0.624	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
3R	9246268	3R_9246268_SNP [dm3] 3R_13420546_SNP [dm6]	G	A	6.484e^-5	0.624	NON_SYNONYMOUS_CODING Ir87a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14756887	2R_14756887_SNP [dm3] 2R_18869382_SNP [dm6]	T	G	6.498e^-5	0.624	INTERGENIC
2R	16921396	2R_16921396_SNP [dm3] 2R_21033891_SNP [dm6]	A	C	6.520e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11598630	3R_11598630_SNP [dm3] 3R_15772908_SNP [dm6]	A	T	6.595e^-5	0.624	INTERGENIC
3L	9424149	3L_9424149_SNP [dm3] 3L_9431049_SNP [dm6]	G	A	6.607e^-5	0.624	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17707091	2R_17707091_SNP [dm3] 2R_21819586_SNP [dm6]	T	C	6.621e^-5	0.624	INTERGENIC
3R	11600596	3R_11600596_SNP [dm3] 3R_15774874_SNP [dm6]	C	A	6.626e^-5	0.624	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207
2R	16418066	2R_16418066_INS [dm3] 2R_20530561_INS [dm6]	G	GGT	6.649e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10171323	2R_10171323_SNP [dm3] 2R_14283818_SNP [dm6]	A	G	6.779e^-5	0.624	INTRON Ih
3L	15884162	3L_15884162_SNP [dm3] 3L_15891062_SNP [dm6]	A	G	6.821e^-5	0.624	INTRON pHCl
2R	9143690	2R_9143690_SNP [dm3] 2R_13256185_SNP [dm6]	C	A	6.831e^-5	0.624	UPSTREAM CR44343 & 1 other INTERGENIC
2R	15033953	2R_15033953_SNP [dm3] 2R_19146448_SNP [dm6]	T	G	6.850e^-5	0.624	INTRON ena	TF binding site mE1_TFBS_inv
3L	7799176	3L_7799176_SNP [dm3] 3L_7806076_SNP [dm6]	T	C	6.859e^-5	0.624	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	1630737	2R_1630737_SNP [dm3] 2R_5743232_SNP [dm6]	A	T	6.956e^-5	0.624	INTERGENIC	regulatory region REDfly_CRMs
2R	8930592	2R_8930592_SNP [dm3] 2R_13043087_SNP [dm6]	A	G	6.960e^-5	0.624	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16661523	2R_16661523_SNP [dm3] 2R_20774018_SNP [dm6]	C	T	6.963e^-5	0.624	SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_chinmo
X	6062132	X_6062132_SNP [dm3] X_6168099_SNP [dm6]	C	G	7.019e^-5	0.624	INTRON Ca-alpha1T
3R	11598585	3R_11598585_SNP [dm3] 3R_15772863_SNP [dm6]	A	T	7.068e^-5	0.624	INTERGENIC
2R	18974812	2R_18974812_SNP [dm3] 2R_23087289_SNP [dm6]	A	T	7.094e^-5	0.624	NON_SYNONYMOUS_CODING CG13538
2R	10171279	2R_10171279_SNP [dm3] 2R_14283774_SNP [dm6]	C	T	7.117e^-5	0.624	INTRON Ih
3R	11598640	3R_11598640_SNP [dm3] 3R_15772918_SNP [dm6]	A	G	7.258e^-5	0.624	INTERGENIC
3R	17264112	3R_17264112_INS [dm3] 3R_21438390_INS [dm6]	T	TC	7.354e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	5212053	2L_5212053_SNP [dm3] 2L_5212053_SNP [dm6]	C	T	7.358e^-5	0.624	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2R	16418051	2R_16418051_INS [dm3] 2R_20530546_INS [dm6]	A	AATTAAGATGA...	7.363e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7799352	3L_7799352_SNP [dm3] 3L_7806252_SNP [dm6]	C	T	7.394e^-5	0.624	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	12851997	3L_12851997_SNP [dm3] 3L_12858897_SNP [dm6]	C	A	7.420e^-5	0.624	NON_SYNONYMOUS_CODING CG32107
2L	8397012	2L_8397012_SNP [dm3] 2L_8397012_SNP [dm6]	G	A	7.450e^-5	0.624	SYNONYMOUS_CODING CG13385 UPSTREAM Peritrophin-15a	TF binding site mE1_TFBS_cad
2L	7664189	2L_7664189_SNP [dm3] 2L_7664189_SNP [dm6]	G	A	7.459e^-5	0.624	INTRON Slob
3R	25919024	3R_25919024_SNP [dm3] 3R_30093302_SNP [dm6]	G	A	7.494e^-5	0.624	INTRON sima
2R	16660417	2R_16660417_SNP [dm3] 2R_20772912_SNP [dm6]	T	G	7.543e^-5	0.624	UPSTREAM CG13443 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4008186	2R_4008186_SNP [dm3] 2R_8120681_SNP [dm6]	C	T	7.560e^-5	0.624	INTRON Asap
3L	12851830	3L_12851830_SNP [dm3] 3L_12858730_SNP [dm6]	T	C	7.567e^-5	0.624	SYNONYMOUS_CODING CG32107
3L	7799451	3L_7799451_SNP [dm3] 3L_7806351_SNP [dm6]	T	G	7.627e^-5	0.624	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15035166	2R_15035166_SNP [dm3] 2R_19147661_SNP [dm6]	T	G	7.633e^-5	0.624	INTRON ena	TF binding site mE1_TFBS_HSA
3R	21411766	3R_21411766_SNP [dm3] 3R_25586044_SNP [dm6]	G	C	7.809e^-5	0.624	INTRON msi
2R	16418055	2R_16418055_SNP [dm3] 2R_20530550_SNP [dm6]	G	T	7.944e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11452722	3L_11452722_SNP [dm3] 3L_11459622_SNP [dm6]	T	C	7.989e^-5	0.624	UTR_3_PRIME CG7551	TF binding site mE1_TFBS_inv
3R	11598605	3R_11598605_SNP [dm3] 3R_15772883_SNP [dm6]	T	A	8.018e^-5	0.624	INTERGENIC
3R	25528976	3R_25528976_SNP [dm3] 3R_29703254_SNP [dm6]	T	C	8.054e^-5	0.624	INTERGENIC
3R	23990088	3R_23990088_DEL [dm3] 3R_28164366_DEL [dm6]	CGCC	C	8.090e^-5	0.624	INTRON CG34354
X	16153354	X_16153354_SNP [dm3] X_16259321_SNP [dm6]	T	A	8.100e^-5	0.624	INTERGENIC
X	6062180	X_6062180_SNP [dm3] X_6168147_SNP [dm6]	G	C	8.107e^-5	0.624	INTRON Ca-alpha1T
X	6062182	X_6062182_SNP [dm3] X_6168149_SNP [dm6]	G	T	8.107e^-5	0.624	INTRON Ca-alpha1T
3L	15283278	3L_15283278_SNP [dm3] 3L_15290178_SNP [dm6]	T	A	8.130e^-5	0.624	INTERGENIC
2R	16418063	2R_16418063_SNP [dm3] 2R_20530558_SNP [dm6]	A	T	8.161e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9146737	2R_9146737_SNP [dm3] 2R_13259232_SNP [dm6]	C	T	8.181e^-5	0.624	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
2L	6335458	2L_6335458_SNP [dm3] 2L_6335458_SNP [dm6]	C	G	8.226e^-5	0.624	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14755578	2R_14755578_SNP [dm3] 2R_18868073_SNP [dm6]	A	G	8.297e^-5	0.624	SYNONYMOUS_CODING CG43109 DOWNSTREAM DptB
2L	11489404	2L_11489404_SNP [dm3] 2L_11489404_SNP [dm6]	A	G	8.298e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10451653	2L_10451653_SNP [dm3] 2L_10451653_SNP [dm6]	C	T	8.311e^-5	0.624	SYNONYMOUS_CODING ppk10
X	13327014	X_13327014_SNP [dm3] X_13432981_SNP [dm6]	C	T	8.311e^-5	0.624	INTERGENIC
3L	11452752	3L_11452752_SNP [dm3] 3L_11459652_SNP [dm6]	A	T	8.320e^-5	0.624	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
X	6062202	X_6062202_SNP [dm3] X_6168169_SNP [dm6]	G	C	8.333e^-5	0.624	INTRON Ca-alpha1T
3R	24206117	3R_24206117_SNP [dm3] 3R_28380395_SNP [dm6]	T	G	8.333e^-5	0.624	INTERGENIC
2L	15596726	2L_15596726_SNP [dm3] 2L_15596726_SNP [dm6]	T	C	8.339e^-5	0.624	INTERGENIC
2R	16418060	2R_16418060_SNP [dm3] 2R_20530555_SNP [dm6]	A	T	8.383e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5774228	3L_5774228_SNP [dm3] 3L_5781128_SNP [dm6]	C	T	8.432e^-5	0.624	START_GAINED PGRP-LD UTR_5_PRIME PGRP-LD UTR_3_PRIME Pmi UPSTREAM PGRP-LD & 1 other INTRON PGRP-LD & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23477228	3R_23477228_SNP [dm3] 3R_27651506_SNP [dm6]	G	A	8.572e^-5	0.624	UTR_3_PRIME tau UPSTREAM tau INTRON tau
2L	19311366	2L_19311366_SNP [dm3] 2L_19311366_SNP [dm6]	T	C	8.610e^-5	0.624	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14952262	3L_14952262_SNP [dm3] 3L_14959162_SNP [dm6]	A	C	8.632e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	11598628	3R_11598628_SNP [dm3] 3R_15772906_SNP [dm6]	T	A	8.641e^-5	0.624	INTERGENIC
X	16162179	X_16162179_SNP [dm3] X_16268146_SNP [dm6]	C	T	8.660e^-5	0.624	SYNONYMOUS_CODING kat80
2L	9445547	2L_9445547_SNP [dm3] 2L_9445547_SNP [dm6]	A	T	8.739e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9445562	2L_9445562_SNP [dm3] 2L_9445562_SNP [dm6]	T	A	8.739e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	4864789	2R_4864789_SNP [dm3] 2R_8977284_SNP [dm6]	A	C	8.750e^-5	0.624	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5708990	2L_5708990_SNP [dm3] 2L_5708990_SNP [dm6]	G	T	8.765e^-5	0.624	UPSTREAM CG7236 INTRON CG7236
2R	9147232	2R_9147232_SNP [dm3] 2R_13259727_SNP [dm6]	C	A	8.793e^-5	0.624	UPSTREAM CG42319 INTERGENIC
X	6062127	X_6062127_SNP [dm3] X_6168094_SNP [dm6]	G	A	8.873e^-5	0.624	INTRON Ca-alpha1T
2R	14060667	2R_14060667_SNP [dm3] 2R_18173162_SNP [dm6]	A	G	8.923e^-5	0.624	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
3R	25515655	3R_25515655_SNP [dm3] 3R_29689933_SNP [dm6]	A	C	8.948e^-5	0.624	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
3R	22679219	3R_22679219_SNP [dm3] 3R_26853497_SNP [dm6]	G	A	8.966e^-5	0.624	INTRON Lerp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9445549	2L_9445549_SNP [dm3] 2L_9445549_SNP [dm6]	T	A	9.014e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19948582	3R_19948582_SNP [dm3] 3R_24122860_SNP [dm6]	T	A	9.051e^-5	0.624	INTRON Rootletin	TF binding site mE1_TFBS_cad
2R	16103672	2R_16103672_SNP [dm3] 2R_20216167_SNP [dm6]	T	C	9.059e^-5	0.624	INTERGENIC
2R	16103673	2R_16103673_SNP [dm3] 2R_20216168_SNP [dm6]	C	T	9.059e^-5	0.624	INTERGENIC
3L	10092919	3L_10092919_SNP [dm3] 3L_10099819_SNP [dm6]	C	T	9.074e^-5	0.624	SYNONYMOUS_CODING CG42826 INTRON dpr6
2R	13483829	2R_13483829_SNP [dm3] 2R_17596324_SNP [dm6]	T	G	9.243e^-5	0.624	SYNONYMOUS_CODING CG11423 INTRON lack
2L	9445539	2L_9445539_SNP [dm3] 2L_9445539_SNP [dm6]	C	G	9.387e^-5	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9329406	3R_9329406_SNP [dm3] 3R_13503684_SNP [dm6]	A	G	9.408e^-5	0.624	INTERGENIC
3R	26978076	3R_26978076_INS [dm3] 3R_31152354_INS [dm6]	T	TA	9.417e^-5	0.624	INTRON Gycbeta100B
3R	13013567	3R_13013567_SNP [dm3] 3R_17187845_SNP [dm6]	G	T	9.423e^-5	0.624	INTRON Mur89F
2L	9857685	2L_9857685_DEL [dm3] 2L_9857685_DEL [dm6]	AA	A	9.435e^-5	0.624	INTRON nAChRalpha6
3L	8637461	3L_8637461_SNP [dm3] 3L_8644361_SNP [dm6]	C	A	9.487e^-5	0.624	DOWNSTREAM Cpr66D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8532451	2L_8532451_SNP [dm3] 2L_8532451_SNP [dm6]	G	A	9.528e^-5	0.624	INTRON CG17834
3R	6463606	3R_6463606_SNP [dm3] 3R_10637884_SNP [dm6]	T	C	9.583e^-5	0.624	INTRON hth
X	22140568	X_22140568_SNP [dm3] X_22738732_SNP [dm6]	G	A	9.603e^-5	0.624	INTRON CR44997	transposable element FlyBase
X	5522538	X_5522538_SNP [dm3] X_5628505_SNP [dm6]	C	T	9.643e^-5	0.624	UTR_3_PRIME CG42492
3R	10038759	3R_10038759_SNP [dm3] 3R_14213037_SNP [dm6]	T	A	9.648e^-5	0.624	INTRON Dop1R1
3R	11598622	3R_11598622_SNP [dm3] 3R_15772900_SNP [dm6]	C	T	9.663e^-5	0.624	INTERGENIC
2R	19164453	2R_19164453_SNP [dm3] 2R_23276930_SNP [dm6]	C	T	9.666e^-5	0.624	INTERGENIC
2R	14144667	2R_14144667_SNP [dm3] 2R_18257162_SNP [dm6]	G	A	9.687e^-5	0.624	EXON CR44421	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9551695	3L_9551695_SNP [dm3] 3L_9558595_SNP [dm6]	T	C	9.695e^-5	0.624	INTRON CG42673
2L	10087305	2L_10087305_SNP [dm3] 2L_10087305_SNP [dm6]	G	C	9.723e^-5	0.624	INTRON CG44153	TF binding site mE1_TFBS_chinmo
3R	23382467	3R_23382467_SNP [dm3] 3R_27556745_SNP [dm6]	T	G	9.743e^-5	0.624	INTRON Klp98A	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	11519841	X_11519841_SNP [dm3] X_11625808_SNP [dm6]	A	T	9.786e^-5	0.624	INTRON Ptp10D
2R	5309149	2R_5309149_SNP [dm3] 2R_9421644_SNP [dm6]	A	C	9.792e^-5	0.624	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	21293167	3L_21293167_SNP [dm3] 3L_21300067_SNP [dm6]	T	A	9.861e^-5	0.624	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11600577	3R_11600577_SNP [dm3] 3R_15774855_SNP [dm6]	T	C	9.864e^-5	0.624	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207
3R	11598597	3R_11598597_SNP [dm3] 3R_15772875_SNP [dm6]	C	T	9.934e^-5	0.624	INTERGENIC
3R	5366433	3R_5366433_SNP [dm3] 3R_9540711_SNP [dm6]	A	T	1.002e^-4	0.624	SYNONYMOUS_CODING mura	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26978080	3R_26978080_SNP [dm3] 3R_31152358_SNP [dm6]	C	T	1.009e^-4	0.624	INTRON Gycbeta100B
3L	5142783	3L_5142783_SNP [dm3] 3L_5149683_SNP [dm6]	G	C	1.012e^-4	0.624	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
2R	6058050	2R_6058050_SNP [dm3] 2R_10170545_SNP [dm6]	C	T	1.019e^-4	0.624	INTRON KCNQ
X	11159805	X_11159805_SNP [dm3] X_11265772_SNP [dm6]	T	C	1.019e^-4	0.624	INTRON CG44422	TF binding site mE1_TFBS_inv
3R	7341010	3R_7341010_SNP [dm3] 3R_11515288_SNP [dm6]	T	C	1.022e^-4	0.624	INTERGENIC
3L	13060871	3L_13060871_SNP [dm3] 3L_13067771_SNP [dm6]	G	A	1.026e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	5361422	X_5361422_SNP [dm3] X_5467389_SNP [dm6]	G	A	1.026e^-4	0.624	INTRON SPR
3R	10249528	3R_10249528_SNP [dm3] 3R_14423806_SNP [dm6]	A	G	1.033e^-4	0.624	INTRON cv-c
3R	15496987	3R_15496987_SNP [dm3] 3R_19671265_SNP [dm6]	G	A	1.038e^-4	0.624	UPSTREAM Naam DOWNSTREAM CG7432 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	1630729	2R_1630729_SNP [dm3] 2R_5743224_SNP [dm6]	T	A	1.041e^-4	0.624	INTERGENIC	regulatory region REDfly_CRMs
3R	21745627	3R_21745627_SNP [dm3] 3R_25919905_SNP [dm6]	T	C	1.044e^-4	0.624	DOWNSTREAM CG42235 INTRON CG42235
2L	9445495	2L_9445495_SNP [dm3] 2L_9445495_SNP [dm6]	T	C	1.049e^-4	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11598642	3R_11598642_SNP [dm3] 3R_15772920_SNP [dm6]	T	A	1.061e^-4	0.624	INTERGENIC
3R	15833329	3R_15833329_SNP [dm3] 3R_20007607_SNP [dm6]	T	C	1.064e^-4	0.624	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	10437376	3L_10437376_SNP [dm3] 3L_10444276_SNP [dm6]	T	A	1.065e^-4	0.624	INTERGENIC
X	16162284	X_16162284_SNP [dm3] X_16268251_SNP [dm6]	A	T	1.068e^-4	0.624	INTRON kat80
2R	8930527	2R_8930527_SNP [dm3] 2R_13043022_SNP [dm6]	G	A	1.071e^-4	0.624	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	9460935	2L_9460935_SNP [dm3] 2L_9460935_SNP [dm6]	T	C	1.074e^-4	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	1.078e^-4	0.624	UPSTREAM CG42319 INTERGENIC
3R	10238635	3R_10238635_SNP [dm3] 3R_14412913_SNP [dm6]	T	A	1.081e^-4	0.624	INTRON cv-c
2L	9463848	2L_9463848_SNP [dm3] 2L_9463848_SNP [dm6]	T	A	1.083e^-4	0.624	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	7699207	3R_7699207_SNP [dm3] 3R_11873485_SNP [dm6]	G	A	1.085e^-4	0.624	INTERGENIC
2R	5317766	2R_5317766_SNP [dm3] 2R_9430261_SNP [dm6]	A	T	1.085e^-4	0.624	INTRON Pdk
2R	16175408	2R_16175408_SNP [dm3] 2R_20287903_SNP [dm6]	C	A	1.092e^-4	0.624	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
X	16785531	X_16785531_SNP [dm3] X_16891498_SNP [dm6]	T	G	1.094e^-4	0.624	DOWNSTREAM CG13002 INTERGENIC
2R	9147073	2R_9147073_MNP [dm3] 2R_13259568_MNP [dm6]	TCT	ATA	1.096e^-4	0.624	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	14196642	3R_14196642_SNP [dm3] 3R_18370920_SNP [dm6]	A	G	1.098e^-4	0.624	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	2637304	3R_2637304_DEL [dm3] 3R_6811582_DEL [dm6]	TTAGAA	T	1.101e^-4	0.624	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	11452759	3L_11452759_SNP [dm3] 3L_11459659_SNP [dm6]	C	T	1.106e^-4	0.624	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
3L	3263234	3L_3263234_SNP [dm3] 3L_3263234_SNP [dm6]	T	C	1.106e^-4	0.624	INTRON ckd
2L	8150892	2L_8150892_SNP [dm3] 2L_8150892_SNP [dm6]	C	A	1.108e^-4	0.624	INTRON CG8552 & 1 other
2L	18477858	2L_18477858_SNP [dm3] 2L_18477858_SNP [dm6]	A	T	1.113e^-4	0.624	INTRON CG10283
X	3142787	X_3142787_INS [dm3] X_3248754_INS [dm6]	G	GCTG	1.113e^-4	0.624	CODON_INSERTION Pig1 UPSTREAM Sgs4 INTRON dnc
3L	995664	3L_995664_INS [dm3] 3L_995664_INS [dm6]	T	TTTAATTA	1.113e^-4	0.624	UTR_3_PRIME CG12038 DOWNSTREAM trio
2R	11618430	2R_11618430_SNP [dm3] 2R_15730925_SNP [dm6]	T	G	1.115e^-4	0.624	INTRON CG30089	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11618438	2R_11618438_SNP [dm3] 2R_15730933_SNP [dm6]	T	A	1.115e^-4	0.624	INTRON CG30089	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10454546	2L_10454546_SNP [dm3] 2L_10454546_SNP [dm6]	A	G	1.118e^-4	0.624	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12859039	2R_12859039_SNP [dm3] 2R_16971534_SNP [dm6]	T	C	1.119e^-4	0.624	EXON CR44377
2L	12314968	2L_12314968_SNP [dm3] 2L_12314968_SNP [dm6]	A	T	1.120e^-4	0.624	DOWNSTREAM CR45282 INTERGENIC
2R	16803460	2R_16803460_SNP [dm3] 2R_20915955_SNP [dm6]	T	C	1.123e^-4	0.624	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_Trl
2L	9464452	2L_9464452_INS [dm3] 2L_9464452_INS [dm6]	G	GG	1.124e^-4	0.624	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2R	9147340	2R_9147340_DEL [dm3] 2R_13259835_DEL [dm6]	AA	C	1.124e^-4	0.624	UPSTREAM CG42319 INTERGENIC
2L	3574190	2L_3574190_SNP [dm3] 2L_3574190_SNP [dm6]	C	T	1.125e^-4	0.624	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	17767855	2R_17767855_SNP [dm3] 2R_21880350_SNP [dm6]	G	A	1.137e^-4	0.624	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9445602	2L_9445602_SNP [dm3] 2L_9445602_SNP [dm6]	A	C	1.139e^-4	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	10059225	3R_10059225_SNP [dm3] 3R_14233503_SNP [dm6]	A	C	1.143e^-4	0.624	INTERGENIC
3L	12852007	3L_12852007_SNP [dm3] 3L_12858907_SNP [dm6]	G	T	1.144e^-4	0.624	NON_SYNONYMOUS_CODING CG32107
2R	10956731	2R_10956731_SNP [dm3] 2R_15069226_SNP [dm6]	C	T	1.148e^-4	0.624	INTERGENIC
2R	17132448	2R_17132448_SNP [dm3] 2R_21244943_SNP [dm6]	C	G	1.151e^-4	0.624	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
3R	11269111	3R_11269111_SNP [dm3] 3R_15443389_SNP [dm6]	G	T	1.153e^-4	0.624	INTRON AdamTS-A	TF binding site mE1_TFBS_cad
2L	9392472	2L_9392472_SNP [dm3] 2L_9392472_SNP [dm6]	A	T	1.158e^-4	0.624	DOWNSTREAM Aldh INTRON Shawl
2R	14072588	2R_14072588_SNP [dm3] 2R_18185083_SNP [dm6]	C	A	1.159e^-4	0.624	UPSTREAM CG5721 INTRON CG33958
X	3532484	X_3532484_SNP [dm3] X_3638451_SNP [dm6]	G	A	1.159e^-4	0.624	INTRON AstA-R1
3L	18544643	3L_18544643_SNP [dm3] 3L_18551543_SNP [dm6]	G	C	1.160e^-4	0.624	INTERGENIC
3L	18953962	3L_18953962_SNP [dm3] 3L_18960862_SNP [dm6]	C	T	1.163e^-4	0.624	INTERGENIC
2R	6037966	2R_6037966_SNP [dm3] 2R_10150461_SNP [dm6]	G	A	1.165e^-4	0.624	INTRON KCNQ
2R	3840102	2R_3840102_SNP [dm3] 2R_7952597_SNP [dm6]	C	A	1.167e^-4	0.624	INTRON CG14764
2R	10511999	2R_10511999_SNP [dm3] 2R_14624494_SNP [dm6]	G	A	1.167e^-4	0.624	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15596705	2L_15596705_SNP [dm3] 2L_15596705_SNP [dm6]	A	G	1.168e^-4	0.624	INTERGENIC
X	6062347	X_6062347_SNP [dm3] X_6168314_SNP [dm6]	A	G	1.168e^-4	0.624	INTRON Ca-alpha1T
3R	4035212	3R_4035212_SNP [dm3] 3R_8209490_SNP [dm6]	G	A	1.174e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	9445552	2L_9445552_SNP [dm3] 2L_9445552_SNP [dm6]	A	C	1.174e^-4	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	9445566	2L_9445566_SNP [dm3] 2L_9445566_SNP [dm6]	C	T	1.174e^-4	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	997197	3L_997197_INS [dm3] 3L_997197_INS [dm6]	A	AA	1.186e^-4	0.624	UTR_3_PRIME trio DOWNSTREAM trio
2R	19786024	2R_19786024_SNP [dm3] 2R_23898501_SNP [dm6]	T	C	1.193e^-4	0.624	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9178635	2R_9178635_SNP [dm3] 2R_13291130_SNP [dm6]	G	T	1.195e^-4	0.624	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11598632	3R_11598632_SNP [dm3] 3R_15772910_SNP [dm6]	C	T	1.197e^-4	0.624	INTERGENIC
2L	9392483	2L_9392483_SNP [dm3] 2L_9392483_SNP [dm6]	G	T	1.197e^-4	0.624	DOWNSTREAM Aldh INTRON Shawl
3R	14196912	3R_14196912_SNP [dm3] 3R_18371190_SNP [dm6]	T	C	1.199e^-4	0.624	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24205346	3R_24205346_SNP [dm3] 3R_28379624_SNP [dm6]	A	T	1.203e^-4	0.624	INTERGENIC
X	8217123	X_8217123_SNP [dm3] X_8323090_SNP [dm6]	C	T	1.207e^-4	0.624	INTRON nAChRalpha3
3L	995222	3L_995222_SNP [dm3] 3L_995222_SNP [dm6]	C	T	1.207e^-4	0.624	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2L	1962622	2L_1962622_SNP [dm3] 2L_1962622_SNP [dm6]	G	A	1.210e^-4	0.624	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9670527	3L_9670527_SNP [dm3] 3L_9677427_SNP [dm6]	G	A	1.212e^-4	0.624	INTRON fry	TF binding site BDTNP1_TFBS_dl
2R	15037891	2R_15037891_SNP [dm3] 2R_19150386_SNP [dm6]	G	T	1.212e^-4	0.624	INTRON ena	TF binding site mE1_TFBS_Trl
X	14808008	X_14808008_SNP [dm3] X_14913975_SNP [dm6]	T	C	1.213e^-4	0.624	UPSTREAM CG12398 INTRON Flo2
2R	13093069	2R_13093069_SNP [dm3] 2R_17205564_SNP [dm6]	A	T	1.214e^-4	0.624	NON_SYNONYMOUS_CODING CG43237
3L	12031706	3L_12031706_SNP [dm3] 3L_12038606_SNP [dm6]	G	C	1.216e^-4	0.624	INTRON rols	TF binding site mE1_TFBS_inv
3L	970792	3L_970792_SNP [dm3] 3L_970792_SNP [dm6]	G	A	1.219e^-4	0.624	INTRON Glut1
2L	7813951	2L_7813951_SNP [dm3] 2L_7813951_SNP [dm6]	T	C	1.222e^-4	0.624	UPSTREAM LanB1 INTRON LanB1
2R	16326295	2R_16326295_SNP [dm3] 2R_20438790_SNP [dm6]	A	T	1.230e^-4	0.624	INTRON CG12484
3R	5802792	3R_5802792_SNP [dm3] 3R_9977070_SNP [dm6]	G	T	1.232e^-4	0.624	INTRON Glut4EF
3R	3098275	3R_3098275_SNP [dm3] 3R_7272553_SNP [dm6]	C	A	1.234e^-4	0.624	DOWNSTREAM rn & 1 other INTERGENIC
3R	10693823	3R_10693823_SNP [dm3] 3R_14868101_SNP [dm6]	A	T	1.235e^-4	0.624	INTRON btsz
3R	25127538	3R_25127538_DEL [dm3] 3R_29301816_DEL [dm6]	TCTGTTTTCTGAATT...	T	1.242e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17427710	2R_17427710_SNP [dm3] 2R_21540205_SNP [dm6]	G	A	1.245e^-4	0.624	UPSTREAM CG33226 INTRON Egfr & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	9445497	2L_9445497_SNP [dm3] 2L_9445497_SNP [dm6]	C	T	1.248e^-4	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11452758	3L_11452758_SNP [dm3] 3L_11459658_SNP [dm6]	A	C	1.249e^-4	0.624	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
2R	16666260	2R_16666260_SNP [dm3] 2R_20778755_SNP [dm6]	A	T	1.251e^-4	0.624	NON_SYNONYMOUS_CODING CG43711	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26409360	3R_26409360_SNP [dm3] 3R_30583638_SNP [dm6]	C	A	1.251e^-4	0.624	UTR_5_PRIME Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	5523009	3L_5523009_SNP [dm3] 3L_5529909_SNP [dm6]	A	T	1.253e^-4	0.624	UPSTREAM Lkr INTERGENIC
3R	5601901	3R_5601901_SNP [dm3] 3R_9776179_SNP [dm6]	G	T	1.255e^-4	0.624	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
X	15811723	X_15811723_SNP [dm3] X_15917690_SNP [dm6]	A	T	1.257e^-4	0.624	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11452749	3L_11452749_INS [dm3] 3L_11459649_INS [dm6]	A	AA	1.258e^-4	0.624	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
3R	23134456	3R_23134456_SNP [dm3] 3R_27308734_SNP [dm6]	C	T	1.258e^-4	0.624	SYNONYMOUS_CODING CG3339
2R	5317377	2R_5317377_SNP [dm3] 2R_9429872_SNP [dm6]	G	A	1.258e^-4	0.624	INTRON Pdk
3L	21291410	3L_21291410_SNP [dm3] 3L_21298310_SNP [dm6]	G	A	1.262e^-4	0.624	UPSTREAM CG43702 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9626596	3L_9626596_SNP [dm3] 3L_9633496_SNP [dm6]	C	T	1.265e^-4	0.624	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
2R	13598038	2R_13598038_SNP [dm3] 2R_17710533_SNP [dm6]	G	T	1.273e^-4	0.624	INTRON CG6424
3L	995441	3L_995441_SNP [dm3] 3L_995441_SNP [dm6]	G	C	1.277e^-4	0.624	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	14059677	2R_14059677_SNP [dm3] 2R_18172172_SNP [dm6]	A	G	1.279e^-4	0.624	UPSTREAM Dgp-1 & 1 other INTRON Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15242808	3R_15242808_SNP [dm3] 3R_19417086_SNP [dm6]	T	C	1.280e^-4	0.624	INTRON CG31221
2R	13131279	2R_13131279_SNP [dm3] 2R_17243774_SNP [dm6]	G	A	1.280e^-4	0.624	INTRON mbl
3L	6899804	3L_6899804_SNP [dm3] 3L_6906704_SNP [dm6]	A	G	1.280e^-4	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16082516	2L_16082516_SNP [dm3] 2L_16082516_SNP [dm6]	G	A	1.281e^-4	0.624	DOWNSTREAM beat-Ia INTERGENIC
2L	12244994	2L_12244994_SNP [dm3] 2L_12244994_SNP [dm6]	T	G	1.285e^-4	0.624	INTRON aret
X	2534152	X_2534152_SNP [dm3] X_2640119_SNP [dm6]	C	T	1.287e^-4	0.624	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2393411	3L_2393411_SNP [dm3] 3L_2393411_SNP [dm6]	G	A	1.294e^-4	0.624	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14196902	3R_14196902_SNP [dm3] 3R_18371180_SNP [dm6]	A	G	1.306e^-4	0.624	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17022312	2R_17022312_SNP [dm3] 2R_21134807_SNP [dm6]	C	T	1.309e^-4	0.624	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2000585	3L_2000585_DEL [dm3] 3L_2000585_DEL [dm6]	AA	A	1.313e^-4	0.624	INTERGENIC
3R	25514988	3R_25514988_SNP [dm3] 3R_29689266_SNP [dm6]	G	T	1.313e^-4	0.624	UTR_5_PRIME Obp99c
2R	16418071	2R_16418071_SNP [dm3] 2R_20530566_SNP [dm6]	G	T	1.320e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13371281	3R_13371281_SNP [dm3] 3R_17545559_SNP [dm6]	A	G	1.324e^-4	0.624	SYNONYMOUS_CODING Prx3 DOWNSTREAM SF1	TF binding site mE1_TFBS_sens
3L	4682078	3L_4682078_SNP [dm3] 3L_4682078_SNP [dm6]	A	G	1.325e^-4	0.624	UPSTREAM axo INTRON axo
2L	882092	2L_882092_SNP [dm3] 2L_882092_SNP [dm6]	T	C	1.326e^-4	0.624	NON_SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
3L	8875085	3L_8875085_INS [dm3] 3L_8881985_INS [dm6]	A	AG	1.328e^-4	0.624	INTRON dally
3L	8875101	3L_8875101_SNP [dm3] 3L_8882001_SNP [dm6]	C	T	1.328e^-4	0.624	INTRON dally
3L	8875102	3L_8875102_INS [dm3] 3L_8882002_INS [dm6]	G	GT	1.328e^-4	0.624	INTRON dally
2R	17189315	2R_17189315_SNP [dm3] 2R_21301810_SNP [dm6]	C	T	1.330e^-4	0.624	UPSTREAM CG42672 INTRON CG42672
X	3246903	X_3246903_SNP [dm3] X_3352870_SNP [dm6]	G	A	1.338e^-4	0.624	INTERGENIC	regulatory region REDfly_CRMs
3L	11452718	3L_11452718_SNP [dm3] 3L_11459618_SNP [dm6]	G	T	1.339e^-4	0.624	UTR_3_PRIME CG7551	TF binding site mE1_TFBS_inv
2L	16082558	2L_16082558_SNP [dm3] 2L_16082558_SNP [dm6]	C	T	1.344e^-4	0.624	DOWNSTREAM beat-Ia INTERGENIC
X	22245097	X_22245097_SNP [dm3] X_22843261_SNP [dm6]	T	C	1.351e^-4	0.624	INTRON fog & 1 other	transposable element FlyBase
3R	26978081	3R_26978081_INS [dm3] 3R_31152359_INS [dm6]	T	TATATTATA	1.352e^-4	0.624	INTRON Gycbeta100B
3L	2285397	3L_2285397_SNP [dm3] 3L_2285397_SNP [dm6]	G	C	1.356e^-4	0.624	INTRON MsR2
3L	11452719	3L_11452719_SNP [dm3] 3L_11459619_SNP [dm6]	G	C	1.360e^-4	0.624	UTR_3_PRIME CG7551	TF binding site mE1_TFBS_inv
3L	995867	3L_995867_SNP [dm3] 3L_995867_SNP [dm6]	G	A	1.360e^-4	0.624	DOWNSTREAM trio & 1 other INTERGENIC
X	21283478	X_21283478_SNP [dm3] X_21412451_SNP [dm6]	A	G	1.362e^-4	0.624	INTERGENIC
2L	9445837	2L_9445837_SNP [dm3] 2L_9445837_SNP [dm6]	A	C	1.365e^-4	0.624	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	17326214	X_17326214_SNP [dm3] X_17432181_SNP [dm6]	T	C	1.365e^-4	0.624	INTRON CG12994
2R	9269114	2R_9269114_SNP [dm3] 2R_13381609_SNP [dm6]	T	G	1.366e^-4	0.624	INTERGENIC
3R	14196633	3R_14196633_SNP [dm3] 3R_18370911_SNP [dm6]	G	A	1.367e^-4	0.624	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	14755730	2R_14755730_SNP [dm3] 2R_18868225_SNP [dm6]	T	C	1.368e^-4	0.624	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2R	14779682	2R_14779682_SNP [dm3] 2R_18892177_SNP [dm6]	T	G	1.376e^-4	0.626	INTRON sano
3R	14196634	3R_14196634_SNP [dm3] 3R_18370912_SNP [dm6]	A	C	1.383e^-4	0.628	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	21745631	3R_21745631_SNP [dm3] 3R_25919909_SNP [dm6]	C	A	1.391e^-4	0.629	DOWNSTREAM CG42235 INTRON CG42235
3L	8875199	3L_8875199_SNP [dm3] 3L_8882099_SNP [dm6]	A	T	1.396e^-4	0.629	INTRON dally
X	11513265	X_11513265_INS [dm3] X_11619232_INS [dm6]	A	AA	1.403e^-4	0.629	UTR_3_PRIME Met	TF binding site mE1_TFBS_cad
3R	14059429	3R_14059429_SNP [dm3] 3R_18233707_SNP [dm6]	T	C	1.404e^-4	0.629	INTERGENIC	regulatory region REDfly_CRMs
3L	15889722	3L_15889722_SNP [dm3] 3L_15896622_SNP [dm6]	A	G	1.404e^-4	0.629	INTRON pHCl
2L	13093919	2L_13093919_DEL [dm3] 2L_13093919_DEL [dm6]	TCTGTTAAGGATTAAATTT...	T	1.409e^-4	0.629	INTERGENIC
2L	3574168	2L_3574168_SNP [dm3] 2L_3574168_SNP [dm6]	T	C	1.412e^-4	0.629	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	15833221	3R_15833221_SNP [dm3] 3R_20007499_SNP [dm6]	G	T	1.414e^-4	0.629	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	12566314	3R_12566314_SNP [dm3] 3R_16740592_SNP [dm6]	A	G	1.419e^-4	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3R	14180579	3R_14180579_SNP [dm3] 3R_18354857_SNP [dm6]	G	A	1.419e^-4	0.629	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14196623	3R_14196623_SNP [dm3] 3R_18370901_SNP [dm6]	A	G	1.435e^-4	0.629	INTRON gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5802465	3R_5802465_SNP [dm3] 3R_9976743_SNP [dm6]	G	C	1.435e^-4	0.629	INTRON Glut4EF
2R	17232532	2R_17232532_SNP [dm3] 2R_21345027_SNP [dm6]	G	A	1.439e^-4	0.629	NON_SYNONYMOUS_CODING CG15666
X	14808199	X_14808199_SNP [dm3] X_14914166_SNP [dm6]	C	T	1.439e^-4	0.629	UPSTREAM CG12398 INTRON Flo2
2R	7020357	2R_7020357_SNP [dm3] 2R_11132852_SNP [dm6]	T	A	1.439e^-4	0.629	INTERGENIC
2R	14340014	2R_14340014_SNP [dm3] 2R_18452509_SNP [dm6]	G	C	1.444e^-4	0.629	SYNONYMOUS_CODING CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15235197	3R_15235197_SNP [dm3] 3R_19409475_SNP [dm6]	G	A	1.447e^-4	0.629	SYNONYMOUS_CODING CG11626
3L	5769237	3L_5769237_SNP [dm3] 3L_5776137_SNP [dm6]	T	A	1.448e^-4	0.629	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
3L	1200713	3L_1200713_SNP [dm3] 3L_1200713_SNP [dm6]	G	A	1.448e^-4	0.629	UPSTREAM mwh INTERGENIC
3R	10428647	3R_10428647_SNP [dm3] 3R_14602925_SNP [dm6]	T	C	1.460e^-4	0.632	UPSTREAM stumps INTRON stumps
3R	10693905	3R_10693905_SNP [dm3] 3R_14868183_SNP [dm6]	A	C	1.474e^-4	0.635	INTRON btsz
3R	10373679	3R_10373679_SNP [dm3] 3R_14547957_SNP [dm6]	C	G	1.477e^-4	0.635	INTRON Pde6
3L	4635988	3L_4635988_SNP [dm3] 3L_4635988_SNP [dm6]	A	G	1.479e^-4	0.635	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3R	4928188	3R_4928188_SNP [dm3] 3R_9102466_SNP [dm6]	C	G	1.479e^-4	0.635	INTRON pum
3L	21987271	3L_21987271_SNP [dm3] 3L_21994171_SNP [dm6]	C	T	1.486e^-4	0.635	INTERGENIC
3R	6072111	3R_6072111_SNP [dm3] 3R_10246389_SNP [dm6]	T	C	1.486e^-4	0.635	NON_SYNONYMOUS_CODING CG42795
3L	16415760	3L_16415760_SNP [dm3] 3L_16422660_SNP [dm6]	A	G	1.497e^-4	0.638	DOWNSTREAM dsx-c73A INTRON CG33158
X	8445284	X_8445284_SNP [dm3] X_8551251_SNP [dm6]	T	G	1.505e^-4	0.64	DOWNSTREAM Nrg INTRON Nrg	TF binding site mE1_TFBS_HSA
2R	14061107	2R_14061107_SNP [dm3] 2R_18173602_SNP [dm6]	A	C	1.509e^-4	0.64	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10482709	2R_10482709_SNP [dm3] 2R_14595204_SNP [dm6]	G	C	1.511e^-4	0.64	UTR_3_PRIME CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2L	14865075	2L_14865075_SNP [dm3] 2L_14865075_SNP [dm6]	T	C	1.527e^-4	0.641	INTERGENIC
X	16134640	X_16134640_SNP [dm3] X_16240607_SNP [dm6]	A	G	1.528e^-4	0.641	INTERGENIC
3L	13164866	3L_13164866_SNP [dm3] 3L_13171766_SNP [dm6]	T	C	1.532e^-4	0.641	INTERGENIC
3L	21995668	3L_21995668_SNP [dm3] 3L_22002568_SNP [dm6]	G	A	1.535e^-4	0.641	INTERGENIC
X	18468641	X_18468641_SNP [dm3] X_18574608_SNP [dm6]	A	T	1.539e^-4	0.641	INTERGENIC
3L	22126515	3L_22126515_SNP [dm3] 3L_22133415_SNP [dm6]	T	G	1.543e^-4	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11039161	3L_11039161_SNP [dm3] 3L_11046061_SNP [dm6]	A	T	1.545e^-4	0.641	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11039162	3L_11039162_SNP [dm3] 3L_11046062_SNP [dm6]	G	A	1.545e^-4	0.641	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5142777	3L_5142777_SNP [dm3] 3L_5149677_SNP [dm6]	A	G	1.546e^-4	0.641	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
2R	7022535	2R_7022535_SNP [dm3] 2R_11135030_SNP [dm6]	A	C	1.548e^-4	0.641	UPSTREAM BBS4 INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	8294112	2R_8294112_SNP [dm3] 2R_12406607_SNP [dm6]	T	C	1.553e^-4	0.641	UTR_3_PRIME Cpr49Af DOWNSTREAM Cpr49Af
2R	7020363	2R_7020363_SNP [dm3] 2R_11132858_SNP [dm6]	A	C	1.557e^-4	0.641	INTERGENIC
X	16835003	X_16835003_INS [dm3] X_16940970_INS [dm6]	A	AAAAATGTA	1.561e^-4	0.641	UPSTREAM wus DOWNSTREAM CG13001 INTERGENIC
3L	19153847	3L_19153847_SNP [dm3] 3L_19160747_SNP [dm6]	A	G	1.565e^-4	0.641	INTRON fz2
2R	11989431	2R_11989431_SNP [dm3] 2R_16101926_SNP [dm6]	T	G	1.569e^-4	0.641	SYNONYMOUS_CODING CG8414 UPSTREAM Rho1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15033712	2R_15033712_SNP [dm3] 2R_19146207_SNP [dm6]	C	T	1.569e^-4	0.641	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8418184	X_8418184_SNP [dm3] X_8524151_SNP [dm6]	T	A	1.572e^-4	0.641	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16162084	X_16162084_SNP [dm3] X_16268051_SNP [dm6]	G	T	1.582e^-4	0.642	INTRON kat80
3R	12566331	3R_12566331_SNP [dm3] 3R_16740609_SNP [dm6]	C	T	1.582e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2R	14747804	2R_14747804_SNP [dm3] 2R_18860299_SNP [dm6]	T	C	1.600e^-4	0.648	DOWNSTREAM Jheh3 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5648003	3R_5648003_SNP [dm3] 3R_9822281_SNP [dm6]	A	G	1.608e^-4	0.65	DOWNSTREAM CG34302 INTERGENIC
2L	3238535	2L_3238535_SNP [dm3] 2L_3238535_SNP [dm6]	G	T	1.617e^-4	0.65	INTERGENIC
3R	10373078	3R_10373078_SNP [dm3] 3R_14547356_SNP [dm6]	G	T	1.619e^-4	0.65	INTRON Pde6
3R	13371280	3R_13371280_SNP [dm3] 3R_17545558_SNP [dm6]	A	G	1.620e^-4	0.65	SYNONYMOUS_CODING Prx3 DOWNSTREAM SF1	TF binding site mE1_TFBS_sens
X	6722741	X_6722741_SNP [dm3] X_6828708_SNP [dm6]	G	A	1.627e^-4	0.65	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
2L	18926991	2L_18926991_SNP [dm3] 2L_18926991_SNP [dm6]	A	C	1.637e^-4	0.65	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25977464	3R_25977464_SNP [dm3] 3R_30151742_SNP [dm6]	G	T	1.641e^-4	0.65	UPSTREAM CG15529 INTERGENIC
2R	14061629	2R_14061629_SNP [dm3] 2R_18174124_SNP [dm6]	G	C	1.642e^-4	0.65	NON_SYNONYMOUS_CODING CG10916 DOWNSTREAM CR45315	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19028919	2R_19028919_DEL [dm3] 2R_23141396_DEL [dm6]	TG	T	1.647e^-4	0.65	UPSTREAM CG13544 & 1 other INTERGENIC
2L	8704257	2L_8704257_INS [dm3] 2L_8704257_INS [dm6]	TTAAA	GCGTTT	1.648e^-4	0.65	INTRON Hnf4 EXON CR44992
3R	5942189	3R_5942189_SNP [dm3] 3R_10116467_SNP [dm6]	C	G	1.653e^-4	0.65	INTRON CG3940
2L	13093891	2L_13093891_DEL [dm3] 2L_13093891_DEL [dm6]	TTTATA	T	1.655e^-4	0.65	INTERGENIC
2L	13093899	2L_13093899_DEL [dm3] 2L_13093899_DEL [dm6]	TAA	T	1.655e^-4	0.65	INTERGENIC
3R	10872931	3R_10872931_DEL [dm3] 3R_15047209_DEL [dm6]	AA	G	1.659e^-4	0.65	INTERGENIC
2R	8129364	2R_8129364_SNP [dm3] 2R_12241859_SNP [dm6]	A	T	1.659e^-4	0.65	UTR_3_PRIME CG43315 UPSTREAM CG43316 DOWNSTREAM CG43315
3R	15236277	3R_15236277_SNP [dm3] 3R_19410555_SNP [dm6]	T	C	1.661e^-4	0.65	SYNONYMOUS_CODING CG11626
3R	17365836	3R_17365836_SNP [dm3] 3R_21540114_SNP [dm6]	A	T	1.669e^-4	0.65	INTERGENIC
2R	14167488	2R_14167488_SNP [dm3] 2R_18279983_SNP [dm6]	C	G	1.670e^-4	0.65	UTR_3_PRIME sbb	TF binding site mE1_TFBS_cad
2R	15143960	2R_15143960_SNP [dm3] 2R_19256455_SNP [dm6]	G	A	1.671e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	11988553	2R_11988553_SNP [dm3] 2R_16101048_SNP [dm6]	C	T	1.674e^-4	0.65	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	16326414	2R_16326414_SNP [dm3] 2R_20438909_SNP [dm6]	A	C	1.681e^-4	0.65	INTRON CG12484
3R	24205454	3R_24205454_SNP [dm3] 3R_28379732_SNP [dm6]	C	T	1.688e^-4	0.65	INTERGENIC
2L	882129	2L_882129_SNP [dm3] 2L_882129_SNP [dm6]	T	A	1.693e^-4	0.65	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
3R	23952142	3R_23952142_SNP [dm3] 3R_28126420_SNP [dm6]	T	C	1.694e^-4	0.65	INTERGENIC
3R	17370221	3R_17370221_SNP [dm3] 3R_21544499_SNP [dm6]	C	A	1.698e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	4928643	3R_4928643_SNP [dm3] 3R_9102921_SNP [dm6]	T	G	1.699e^-4	0.65	INTRON pum
3R	11610835	3R_11610835_SNP [dm3] 3R_15785113_SNP [dm6]	A	T	1.701e^-4	0.65	INTERGENIC
3L	3344406	3L_3344406_SNP [dm3] 3L_3344406_SNP [dm6]	A	G	1.701e^-4	0.65	INTRON kst
X	5290052	X_5290052_SNP [dm3] X_5396019_SNP [dm6]	T	A	1.709e^-4	0.65	INTRON SK
2R	15033860	2R_15033860_SNP [dm3] 2R_19146355_SNP [dm6]	A	G	1.711e^-4	0.65	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8874831	3L_8874831_SNP [dm3] 3L_8881731_SNP [dm6]	G	A	1.715e^-4	0.65	INTRON dally
2L	16386107	2L_16386107_SNP [dm3] 2L_16386107_SNP [dm6]	G	C	1.722e^-4	0.65	INTERGENIC
X	5980847	X_5980847_SNP [dm3] X_6086814_SNP [dm6]	A	G	1.722e^-4	0.65	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6859385	3R_6859385_SNP [dm3] 3R_11033663_SNP [dm6]	T	G	1.724e^-4	0.65	INTRON CG34114
2R	15125986	2R_15125986_SNP [dm3] 2R_19238481_SNP [dm6]	A	T	1.730e^-4	0.65	INTRON cora
3R	13021717	3R_13021717_SNP [dm3] 3R_17195995_SNP [dm6]	T	C	1.731e^-4	0.65	INTRON Mur89F
2R	17116081	2R_17116081_SNP [dm3] 2R_21228576_SNP [dm6]	G	A	1.732e^-4	0.65	INTRON ASPP
2L	9647996	2L_9647996_SNP [dm3] 2L_9647996_SNP [dm6]	C	A	1.746e^-4	0.654	SYNONYMOUS_CODING Apoltp
X	19222990	X_19222990_SNP [dm3] X_19328957_SNP [dm6]	G	C	1.752e^-4	0.654	UTR_3_PRIME nAChRalpha7
2L	15787218	2L_15787218_SNP [dm3] 2L_15787218_SNP [dm6]	T	A	1.756e^-4	0.654	SYNONYMOUS_CODING CG18109
3L	14569458	3L_14569458_SNP [dm3] 3L_14576358_SNP [dm6]	A	G	1.758e^-4	0.654	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16520519	2L_16520519_SNP [dm3] 2L_16520519_SNP [dm6]	T	C	1.770e^-4	0.657	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3L	13437219	3L_13437219_SNP [dm3] 3L_13444119_SNP [dm6]	G	C	1.787e^-4	0.662	INTRON CG10732
3L	15883966	3L_15883966_SNP [dm3] 3L_15890866_SNP [dm6]	A	G	1.790e^-4	0.662	INTRON pHCl
3R	15315132	3R_15315132_SNP [dm3] 3R_19489410_SNP [dm6]	G	A	1.795e^-4	0.663	DOWNSTREAM CG15025 INTRON Dys
2L	15596702	2L_15596702_SNP [dm3] 2L_15596702_SNP [dm6]	G	A	1.806e^-4	0.664	INTERGENIC
2L	5159968	2L_5159968_SNP [dm3] 2L_5159968_SNP [dm6]	T	A	1.807e^-4	0.664	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	8874408	3L_8874408_SNP [dm3] 3L_8881308_SNP [dm6]	T	A	1.808e^-4	0.664	INTRON dally
3L	15884156	3L_15884156_INS [dm3] 3L_15891056_INS [dm6]	C	GCATACTATA	1.812e^-4	0.664	INTRON pHCl
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	1.819e^-4	0.664	DOWNSTREAM CG3982 INTRON CG3967
3L	15889772	3L_15889772_SNP [dm3] 3L_15896672_SNP [dm6]	G	A	1.825e^-4	0.664	INTRON pHCl
3R	3159596	3R_3159596_SNP [dm3] 3R_7333874_SNP [dm6]	T	C	1.827e^-4	0.664	INTERGENIC
3R	10280958	3R_10280958_SNP [dm3] 3R_14455236_SNP [dm6]	C	G	1.828e^-4	0.664	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15289723	3R_15289723_SNP [dm3] 3R_19464001_SNP [dm6]	C	T	1.835e^-4	0.664	UPSTREAM CG6255 INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	26412347	3R_26412347_SNP [dm3] 3R_30586625_SNP [dm6]	T	C	1.841e^-4	0.664	SYNONYMOUS_CODING CG9717
2L	10963824	2L_10963824_SNP [dm3] 2L_10963824_SNP [dm6]	G	T	1.841e^-4	0.664	UTR_5_PRIME dpr2 INTRON dpr2	TF binding site mE1_TFBS_bab1
2R	15598059	2R_15598059_SNP [dm3] 2R_19710554_SNP [dm6]	G	T	1.844e^-4	0.664	INTERGENIC	regulatory region REDfly_CRMs
3L	11452726	3L_11452726_SNP [dm3] 3L_11459626_SNP [dm6]	A	T	1.857e^-4	0.664	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
3L	9424141	3L_9424141_SNP [dm3] 3L_9431041_SNP [dm6]	A	G	1.857e^-4	0.664	NON_SYNONYMOUS_CODING MTF-1 START_GAINED MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16661419	2R_16661419_SNP [dm3] 2R_20773914_SNP [dm6]	G	A	1.859e^-4	0.664	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_chinmo
2R	14144718	2R_14144718_SNP [dm3] 2R_18257213_SNP [dm6]	A	G	1.859e^-4	0.664	EXON CR44421	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3840120	2R_3840120_SNP [dm3] 2R_7952615_SNP [dm6]	T	C	1.861e^-4	0.664	INTRON CG14764
2R	10482506	2R_10482506_SNP [dm3] 2R_14595001_SNP [dm6]	T	C	1.863e^-4	0.664	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2L	10442813	2L_10442813_SNP [dm3] 2L_10442813_SNP [dm6]	T	A	1.869e^-4	0.664	UPSTREAM CR45375 INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10751321	3L_10751321_SNP [dm3] 3L_10758221_SNP [dm6]	G	C	1.869e^-4	0.664	INTERGENIC
3L	8699114	3L_8699114_SNP [dm3] 3L_8706014_SNP [dm6]	G	C	1.881e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8263358	2L_8263358_DEL [dm3] 2L_8263358_DEL [dm6]	TT	T	1.881e^-4	0.665	INTRON Btk29A
3R	10428627	3R_10428627_SNP [dm3] 3R_14602905_SNP [dm6]	A	G	1.883e^-4	0.665	UPSTREAM stumps INTRON stumps
2R	14059909	2R_14059909_SNP [dm3] 2R_18172404_SNP [dm6]	A	G	1.886e^-4	0.665	UPSTREAM Dgp-1 & 1 other INTRON Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	5290043	X_5290043_SNP [dm3] X_5396010_SNP [dm6]	T	C	1.901e^-4	0.668	INTRON SK
2R	17076376	2R_17076376_SNP [dm3] 2R_21188871_SNP [dm6]	C	T	1.903e^-4	0.668	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3R	25015666	3R_25015666_SNP [dm3] 3R_29189944_SNP [dm6]	T	G	1.913e^-4	0.67	INTRON CG14509
2L	11489491	2L_11489491_SNP [dm3] 2L_11489491_SNP [dm6]	C	T	1.916e^-4	0.67	INTERGENIC
2R	18392673	2R_18392673_SNP [dm3] 2R_22505168_SNP [dm6]	G	A	1.921e^-4	0.67	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14340005	2R_14340005_SNP [dm3] 2R_18452500_SNP [dm6]	A	G	1.930e^-4	0.67	SYNONYMOUS_CODING CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7950431	2L_7950431_INS [dm3] 2L_7950431_INS [dm6]	C	CC	1.930e^-4	0.67	INTRON Snoo
3R	5799837	3R_5799837_SNP [dm3] 3R_9974115_SNP [dm6]	T	G	1.932e^-4	0.67	INTRON Glut4EF
3R	23477229	3R_23477229_SNP [dm3] 3R_27651507_SNP [dm6]	T	G	1.935e^-4	0.67	UTR_3_PRIME tau UPSTREAM tau INTRON tau
2R	17315111	2R_17315111_SNP [dm3] 2R_21427606_SNP [dm6]	C	T	1.937e^-4	0.67	INTRON Sdc
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	1.950e^-4	0.673	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8930441	2R_8930441_SNP [dm3] 2R_13042936_SNP [dm6]	A	G	1.953e^-4	0.673	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15527894	X_15527894_DEL [dm3] X_15633861_DEL [dm6]	TT	T	1.977e^-4	0.674	UPSTREAM sog INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12205140	2L_12205140_SNP [dm3] 2L_12205140_SNP [dm6]	T	C	1.980e^-4	0.674	UPSTREAM aret INTRON aret
2R	10511986	2R_10511986_SNP [dm3] 2R_14624481_SNP [dm6]	C	T	1.982e^-4	0.674	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	3840098	2R_3840098_SNP [dm3] 2R_7952593_SNP [dm6]	T	A	1.986e^-4	0.674	INTRON CG14764
2L	3889666	2L_3889666_SNP [dm3] 2L_3889666_SNP [dm6]	G	T	1.986e^-4	0.674	SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
3L	14994551	3L_14994551_SNP [dm3] 3L_15001451_SNP [dm6]	A	T	1.988e^-4	0.674	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3R	9226420	3R_9226420_SNP [dm3] 3R_13400698_SNP [dm6]	C	T	1.988e^-4	0.674	INTRON CG9796	TF binding site mE1_TFBS_Trl
X	16162088	X_16162088_SNP [dm3] X_16268055_SNP [dm6]	G	A	1.990e^-4	0.674	INTRON kat80
3L	4139328	3L_4139328_SNP [dm3] 3L_4139328_SNP [dm6]	T	C	1.992e^-4	0.674	UPSTREAM Rop INTRON Ras64B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16481619	2R_16481619_SNP [dm3] 2R_20594114_SNP [dm6]	A	C	1.998e^-4	0.674	INTRON bl
3L	1382066	3L_1382066_SNP [dm3] 3L_1382066_SNP [dm6]	G	A	1.999e^-4	0.674	INTRON Ptp61F & 1 other
2L	6585934	2L_6585934_SNP [dm3] 2L_6585934_SNP [dm6]	C	T	2.007e^-4	0.674	INTRON CG11319
3L	2000708	3L_2000708_SNP [dm3] 3L_2000708_SNP [dm6]	A	G	2.009e^-4	0.674	INTERGENIC
2R	18327513	2R_18327513_SNP [dm3] 2R_22440008_SNP [dm6]	C	A	2.013e^-4	0.674	INTERGENIC
3R	17841011	3R_17841011_SNP [dm3] 3R_22015289_SNP [dm6]	C	T	2.024e^-4	0.674	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	17173599	2R_17173599_SNP [dm3] 2R_21286094_SNP [dm6]	G	A	2.026e^-4	0.674	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
X	20742486	X_20742486_SNP [dm3] X_20871459_SNP [dm6]	G	A	2.035e^-4	0.674	INTRON shakB
3R	20941957	3R_20941957_SNP [dm3] 3R_25116235_SNP [dm6]	G	A	2.036e^-4	0.674	INTRON CG31108
2R	14754384	2R_14754384_SNP [dm3] 2R_18866879_SNP [dm6]	A	G	2.045e^-4	0.674	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
X	16834864	X_16834864_INS [dm3] X_16940831_INS [dm6]	A	AA	2.045e^-4	0.674	UTR_5_PRIME wus DOWNSTREAM CG13001
X	3017870	X_3017870_SNP [dm3] X_3123837_SNP [dm6]	T	A	2.051e^-4	0.674	INTRON kirre
3L	995726	3L_995726_SNP [dm3] 3L_995726_SNP [dm6]	T	G	2.051e^-4	0.674	DOWNSTREAM trio & 1 other INTERGENIC
3L	12612853	3L_12612853_SNP [dm3] 3L_12619753_SNP [dm6]	A	C	2.056e^-4	0.674	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12846291	2R_12846291_DEL [dm3] 2R_16958786_DEL [dm6]	AA	A	2.059e^-4	0.674	UTR_3_PRIME CG6665 DOWNSTREAM CG9010	TF binding site mE1_TFBS_cad
2R	11732104	2R_11732104_SNP [dm3] 2R_15844599_SNP [dm6]	G	A	2.060e^-4	0.674	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_sens
3R	4930963	3R_4930963_SNP [dm3] 3R_9105241_SNP [dm6]	T	C	2.070e^-4	0.674	INTRON pum
3R	23360847	3R_23360847_SNP [dm3] 3R_27535125_SNP [dm6]	G	T	2.071e^-4	0.674	DOWNSTREAM CR44289 INTERGENIC
3L	8875186	3L_8875186_INS [dm3] 3L_8882086_INS [dm6]	A	ATTTCAAATGA...	2.073e^-4	0.674	INTRON dally
3L	14983454	3L_14983454_SNP [dm3] 3L_14990354_SNP [dm6]	C	T	2.077e^-4	0.674	SYNONYMOUS_CODING mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_hkb mE1_TFBS_HSA
3R	24205238	3R_24205238_SNP [dm3] 3R_28379516_SNP [dm6]	C	A	2.077e^-4	0.674	INTERGENIC
3R	10736663	3R_10736663_SNP [dm3] 3R_14910941_SNP [dm6]	G	C	2.083e^-4	0.674	INTERGENIC
3R	14057321	3R_14057321_SNP [dm3] 3R_18231599_SNP [dm6]	T	C	2.089e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16112754	2L_16112754_SNP [dm3] 2L_16112754_SNP [dm6]	C	A	2.090e^-4	0.674	INTERGENIC
2L	9856788	2L_9856788_SNP [dm3] 2L_9856788_SNP [dm6]	C	A	2.091e^-4	0.674	INTRON nAChRalpha6
3L	18205263	3L_18205263_SNP [dm3] 3L_18212163_SNP [dm6]	C	T	2.095e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	4036574	3L_4036574_DEL [dm3] 3L_4036574_DEL [dm6]	CC	C	2.097e^-4	0.674	DOWNSTREAM Gr64d & 2 others INTRON Gr64f
2L	19229354	2L_19229354_SNP [dm3] 2L_19229354_SNP [dm6]	C	G	2.100e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	4177741	3L_4177741_SNP [dm3] 3L_4177741_SNP [dm6]	C	T	2.111e^-4	0.674	UTR_5_PRIME Teh4 INTRON CG18675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7493058	2L_7493058_SNP [dm3] 2L_7493058_SNP [dm6]	G	C	2.111e^-4	0.674	INTRON Ziz
3L	10694897	3L_10694897_SNP [dm3] 3L_10701797_SNP [dm6]	T	A	2.111e^-4	0.674	INTERGENIC
3R	9230798	3R_9230798_SNP [dm3] 3R_13405076_SNP [dm6]	A	G	2.114e^-4	0.674	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14654196	3R_14654196_SNP [dm3] 3R_18828474_SNP [dm6]	A	T	2.114e^-4	0.674	INTRON CG18208
2L	15597319	2L_15597319_SNP [dm3] 2L_15597319_SNP [dm6]	G	T	2.115e^-4	0.674	INTERGENIC
2R	10226884	2R_10226884_SNP [dm3] 2R_14339379_SNP [dm6]	T	C	2.118e^-4	0.674	INTRON Shroom
2L	11489408	2L_11489408_SNP [dm3] 2L_11489408_SNP [dm6]	C	A	2.119e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17618570	3R_17618570_SNP [dm3] 3R_21792848_SNP [dm6]	A	G	2.119e^-4	0.674	INTRON CASK	TF binding site mE1_TFBS_cad
2R	13752126	2R_13752126_SNP [dm3] 2R_17864621_SNP [dm6]	G	C	2.126e^-4	0.674	NON_SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z
3L	826135	3L_826135_SNP [dm3] 3L_826135_SNP [dm6]	T	C	2.127e^-4	0.674	DOWNSTREAM CG13900 & 2 others INTERGENIC
3L	7799054	3L_7799054_SNP [dm3] 3L_7805954_SNP [dm6]	A	G	2.134e^-4	0.675	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	11484920	2L_11484920_SNP [dm3] 2L_11484920_SNP [dm6]	T	A	2.146e^-4	0.675	UTR_5_PRIME sala & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8888646	3L_8888646_SNP [dm3] 3L_8895546_SNP [dm6]	G	A	2.153e^-4	0.675	SPLICE_SITE_REGION TrpA1 INTRON TrpA1
3L	10757578	3L_10757578_SNP [dm3] 3L_10764478_SNP [dm6]	C	T	2.154e^-4	0.675	INTERGENIC
3L	12237551	3L_12237551_SNP [dm3] 3L_12244451_SNP [dm6]	C	T	2.160e^-4	0.675	INTRON app
X	2540756	X_2540756_SNP [dm3] X_2646723_SNP [dm6]	C	G	2.161e^-4	0.675	UTR_5_PRIME sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7812811	2L_7812811_SNP [dm3] 2L_7812811_SNP [dm6]	A	T	2.162e^-4	0.675	INTRON LanB1	TF binding site BDTNP1_TFBS_twi
2R	14757151	2R_14757151_SNP [dm3] 2R_18869646_SNP [dm6]	A	G	2.162e^-4	0.675	INTERGENIC
3L	7344187	3L_7344187_SNP [dm3] 3L_7351087_SNP [dm6]	C	A	2.163e^-4	0.675	INTRON qm
2L	9677398	2L_9677398_SNP [dm3] 2L_9677398_SNP [dm6]	A	T	2.179e^-4	0.676	INTERGENIC
2L	2318258	2L_2318258_SNP [dm3] 2L_2318258_SNP [dm6]	T	A	2.182e^-4	0.676	INTRON CG9967 & 1 other
2L	1066911	2L_1066911_SNP [dm3] 2L_1066911_SNP [dm6]	G	T	2.184e^-4	0.676	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	5449780	X_5449780_SNP [dm3] X_5555747_SNP [dm6]	A	T	2.184e^-4	0.676	INTRON Vsx2	TF binding site mE1_TFBS_Kr
2L	16293805	2L_16293805_SNP [dm3] 2L_16293805_SNP [dm6]	C	T	2.191e^-4	0.676	UPSTREAM CG13258 & 2 others INTERGENIC
3L	14099940	3L_14099940_SNP [dm3] 3L_14106840_SNP [dm6]	C	T	2.203e^-4	0.676	NON_SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9232049	3R_9232049_SNP [dm3] 3R_13406327_SNP [dm6]	C	G	2.216e^-4	0.676	SYNONYMOUS_CODING yellow-e2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21311871	3R_21311871_SNP [dm3] 3R_25486149_SNP [dm6]	C	T	2.219e^-4	0.676	UTR_3_PRIME Dhap-at DOWNSTREAM CG42488 & 1 other	TF binding site mE1_TFBS_cad
3R	25413768	3R_25413768_SNP [dm3] 3R_29588046_SNP [dm6]	C	T	2.225e^-4	0.676	SYNONYMOUS_CODING CG7567 DOWNSTREAM CG11470
3L	6900026	3L_6900026_SNP [dm3] 3L_6906926_SNP [dm6]	C	T	2.227e^-4	0.676	INTERGENIC	silencer mE1_HDAC_PRE
3L	8425907	3L_8425907_SNP [dm3] 3L_8432807_SNP [dm6]	T	A	2.232e^-4	0.676	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
2R	17173605	2R_17173605_SNP [dm3] 2R_21286100_SNP [dm6]	G	A	2.233e^-4	0.676	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
3R	14654200	3R_14654200_SNP [dm3] 3R_18828478_SNP [dm6]	G	T	2.236e^-4	0.676	INTRON CG18208
X	16134661	X_16134661_SNP [dm3] X_16240628_SNP [dm6]	T	C	2.241e^-4	0.676	INTERGENIC
3L	16723767	3L_16723767_SNP [dm3] 3L_16730667_SNP [dm6]	A	T	2.250e^-4	0.676	INTRON Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19171560	2R_19171560_SNP [dm3] 2R_23284037_SNP [dm6]	T	G	2.251e^-4	0.676	UTR_5_PRIME CG3124 UPSTREAM CG13541
3R	16232671	3R_16232671_SNP [dm3] 3R_20406949_SNP [dm6]	A	T	2.251e^-4	0.676	SYNONYMOUS_CODING CG4335 INTRON Gfrl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14954367	3L_14954367_SNP [dm3] 3L_14961267_SNP [dm6]	G	C	2.251e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2513204	X_2513204_SNP [dm3] X_2619171_SNP [dm6]	T	A	2.254e^-4	0.676	SYNONYMOUS_CODING Tsp3A UPSTREAM Seipin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17923383	X_17923383_SNP [dm3] X_18029350_SNP [dm6]	T	C	2.257e^-4	0.676	INTRON Sh
2L	15095454	2L_15095454_SNP [dm3] 2L_15095454_SNP [dm6]	A	G	2.258e^-4	0.676	INTRON CG15270
2R	13131285	2R_13131285_INS [dm3] 2R_17243780_INS [dm6]	A	CCATTTAGAAGCTTCAAATT...	2.258e^-4	0.676	INTRON mbl
2L	17959779	2L_17959779_SNP [dm3] 2L_17959779_SNP [dm6]	A	G	2.262e^-4	0.676	INTERGENIC
3L	18976134	3L_18976134_SNP [dm3] 3L_18983034_SNP [dm6]	G	A	2.262e^-4	0.676	INTERGENIC
3R	10215088	3R_10215088_SNP [dm3] 3R_14389366_SNP [dm6]	A	T	2.265e^-4	0.676	INTERGENIC
3R	26603618	3R_26603618_SNP [dm3] 3R_30777896_SNP [dm6]	G	A	2.269e^-4	0.676	INTRON zfh1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10617505	2R_10617505_DEL [dm3] 2R_14730000_DEL [dm6]	AGTCGGCTTCTA...	A	2.276e^-4	0.676	INTERGENIC
3L	14569437	3L_14569437_SNP [dm3] 3L_14576337_SNP [dm6]	A	G	2.283e^-4	0.676	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9147237	2R_9147237_SNP [dm3] 2R_13259732_SNP [dm6]	C	A	2.284e^-4	0.676	UPSTREAM CG42319 INTERGENIC
2L	7493065	2L_7493065_SNP [dm3] 2L_7493065_SNP [dm6]	A	G	2.287e^-4	0.676	INTRON Ziz
X	22140606	X_22140606_SNP [dm3] X_22738770_SNP [dm6]	A	C	2.289e^-4	0.676	INTRON CR44997	transposable element FlyBase
3L	3348952	3L_3348952_SNP [dm3] 3L_3348952_SNP [dm6]	C	T	2.292e^-4	0.676	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12185274	2L_12185274_SNP [dm3] 2L_12185274_SNP [dm6]	C	A	2.300e^-4	0.676	INTRON aret
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	2.302e^-4	0.676	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3R	25930717	3R_25930717_INS [dm3] 3R_30104995_INS [dm6]	T	TGTATAAATAGT...	2.305e^-4	0.676	INTRON sima
3L	12794878	3L_12794878_SNP [dm3] 3L_12801778_SNP [dm6]	G	C	2.305e^-4	0.676	INTRON Atg1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15176373	3L_15176373_SNP [dm3] 3L_15183273_SNP [dm6]	G	A	2.306e^-4	0.676	INTERGENIC
2R	9147124	2R_9147124_SNP [dm3] 2R_13259619_SNP [dm6]	T	A	2.310e^-4	0.676	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	19017086	3L_19017086_SNP [dm3] 3L_19023986_SNP [dm6]	C	T	2.313e^-4	0.676	INTRON nkd	TF binding site mE1_TFBS_sbb
3R	15235592	3R_15235592_SNP [dm3] 3R_19409870_SNP [dm6]	C	A	2.317e^-4	0.676	SYNONYMOUS_CODING CG11626
3R	15254315	3R_15254315_INS [dm3] 3R_19428593_INS [dm6]	G	GA	2.318e^-4	0.676	INTRON CG31221
2L	7812400	2L_7812400_SNP [dm3] 2L_7812400_SNP [dm6]	T	C	2.321e^-4	0.676	INTRON LanB1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13270076	X_13270076_DEL [dm3] X_13376043_DEL [dm6]	TT	T	2.326e^-4	0.676	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16362194	2L_16362194_SNP [dm3] 2L_16362194_SNP [dm6]	A	C	2.326e^-4	0.676	INTERGENIC
3L	9381200	3L_9381200_SNP [dm3] 3L_9388100_SNP [dm6]	A	G	2.329e^-4	0.676	SYNONYMOUS_CODING CG4080	TF binding site mE1_TFBS_cad
3L	7799050	3L_7799050_SNP [dm3] 3L_7805950_SNP [dm6]	G	C	2.332e^-4	0.676	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	15359216	2L_15359216_SNP [dm3] 2L_15359216_SNP [dm6]	T	A	2.350e^-4	0.679	INTERGENIC
2L	4523353	2L_4523353_SNP [dm3] 2L_4523353_SNP [dm6]	T	C	2.356e^-4	0.679	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad
3L	2771834	3L_2771834_SNP [dm3] 3L_2771834_SNP [dm6]	A	T	2.357e^-4	0.679	UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	4551667	2L_4551667_SNP [dm3] 2L_4551667_SNP [dm6]	A	G	2.362e^-4	0.679	INTRON dp
X	5290044	X_5290044_SNP [dm3] X_5396011_SNP [dm6]	G	A	2.365e^-4	0.679	INTRON SK
X	5290049	X_5290049_SNP [dm3] X_5396016_SNP [dm6]	A	G	2.365e^-4	0.679	INTRON SK
3L	995006	3L_995006_SNP [dm3] 3L_995006_SNP [dm6]	T	C	2.375e^-4	0.679	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15597899	2R_15597899_SNP [dm3] 2R_19710394_SNP [dm6]	G	T	2.377e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs
X	2474861	X_2474861_INS [dm3] X_2580828_INS [dm6]	A	ACGTG	2.381e^-4	0.679	UPSTREAM CG13759 & 1 other INTERGENIC
3R	24730495	3R_24730495_SNP [dm3] 3R_28904773_SNP [dm6]	A	T	2.385e^-4	0.679	INTRON Doa
2R	11415377	2R_11415377_SNP [dm3] 2R_15527872_SNP [dm6]	G	C	2.386e^-4	0.679	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17380022	2R_17380022_SNP [dm3] 2R_21492517_SNP [dm6]	T	C	2.389e^-4	0.679	INTRON Fkbp14
3L	11444323	3L_11444323_SNP [dm3] 3L_11451223_SNP [dm6]	C	G	2.390e^-4	0.679	INTERGENIC
2R	14198993	2R_14198993_SNP [dm3] 2R_18311488_SNP [dm6]	G	A	2.398e^-4	0.679	UPSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21990281	3L_21990281_SNP [dm3] 3L_21997181_SNP [dm6]	T	A	2.399e^-4	0.679	INTERGENIC
2R	16326386	2R_16326386_SNP [dm3] 2R_20438881_SNP [dm6]	A	C	2.405e^-4	0.679	INTRON CG12484
2R	11585720	2R_11585720_SNP [dm3] 2R_15698215_SNP [dm6]	T	G	2.412e^-4	0.679	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5774065	3L_5774065_SNP [dm3] 3L_5780965_SNP [dm6]	C	T	2.413e^-4	0.679	SYNONYMOUS_CODING Pmi UTR_5_PRIME PGRP-LD UPSTREAM PGRP-LD & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26297454	3R_26297454_SNP [dm3] 3R_30471732_SNP [dm6]	T	A	2.413e^-4	0.679	INTRON PH4alphaEFB
3R	19307446	3R_19307446_SNP [dm3] 3R_23481724_SNP [dm6]	A	G	2.434e^-4	0.679	UPSTREAM Ir94f INTERGENIC
2R	16326431	2R_16326431_SNP [dm3] 2R_20438926_SNP [dm6]	T	A	2.442e^-4	0.679	INTRON CG12484
X	2474864	X_2474864_SNP [dm3] X_2580831_SNP [dm6]	T	C	2.444e^-4	0.679	UPSTREAM CG13759 & 1 other INTERGENIC
3L	4682031	3L_4682031_SNP [dm3] 3L_4682031_SNP [dm6]	C	A	2.455e^-4	0.679	UPSTREAM axo INTRON axo
2L	9648332	2L_9648332_SNP [dm3] 2L_9648332_SNP [dm6]	C	A	2.458e^-4	0.679	SYNONYMOUS_CODING Apoltp
3R	12566371	3R_12566371_SNP [dm3] 3R_16740649_SNP [dm6]	A	G	2.462e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3R	13371287	3R_13371287_SNP [dm3] 3R_17545565_SNP [dm6]	A	G	2.464e^-4	0.679	SYNONYMOUS_CODING Prx3 DOWNSTREAM SF1	TF binding site mE1_TFBS_sens
2L	11489409	2L_11489409_SNP [dm3] 2L_11489409_SNP [dm6]	T	A	2.469e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18957718	2R_18957718_SNP [dm3] 2R_23070195_SNP [dm6]	C	T	2.470e^-4	0.679	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15254280	3R_15254280_SNP [dm3] 3R_19428558_SNP [dm6]	A	T	2.470e^-4	0.679	INTRON CG31221
3R	25918811	3R_25918811_DEL [dm3] 3R_30093089_DEL [dm6]	CA	C	2.471e^-4	0.679	INTRON sima
X	17923339	X_17923339_SNP [dm3] X_18029306_SNP [dm6]	A	T	2.471e^-4	0.679	INTRON Sh
2R	14988863	2R_14988863_SNP [dm3] 2R_19101358_SNP [dm6]	A	C	2.475e^-4	0.679	INTRON 5-HT1A
2R	5213857	2R_5213857_SNP [dm3] 2R_9326352_SNP [dm6]	C	T	2.475e^-4	0.679	INTRON CG13954 & 1 other
X	11627301	X_11627301_SNP [dm3] X_11733268_SNP [dm6]	A	C	2.480e^-4	0.679	UPSTREAM inaF-B INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad
2R	14754439	2R_14754439_INS [dm3] 2R_18866934_INS [dm6]	T	TT	2.482e^-4	0.679	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	18638378	2R_18638378_SNP [dm3] 2R_22750873_SNP [dm6]	G	A	2.482e^-4	0.679	INTRON CG42260	TF binding site mE1_TFBS_inv
3L	5774224	3L_5774224_SNP [dm3] 3L_5781124_SNP [dm6]	C	T	2.482e^-4	0.679	START_GAINED PGRP-LD UTR_5_PRIME PGRP-LD UTR_3_PRIME Pmi UPSTREAM PGRP-LD & 1 other INTRON PGRP-LD & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5447236	X_5447236_SNP [dm3] X_5553203_SNP [dm6]	A	G	2.483e^-4	0.679	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	20204909	2R_20204909_SNP [dm3] 2R_24317386_SNP [dm6]	T	A	2.485e^-4	0.679	INTERGENIC
3L	8140589	3L_8140589_SNP [dm3] 3L_8147489_SNP [dm6]	G	A	2.503e^-4	0.679	INTRON CG13676
2L	3574750	2L_3574750_SNP [dm3] 2L_3574750_SNP [dm6]	C	G	2.504e^-4	0.679	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
3L	15608156	3L_15608156_SNP [dm3] 3L_15615056_SNP [dm6]	T	C	2.510e^-4	0.679	INTRON comm3
2R	15569392	2R_15569392_DEL [dm3] 2R_19681887_DEL [dm6]	TCTCAAGTAT	T	2.524e^-4	0.679	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18395134	2R_18395134_SNP [dm3] 2R_22507629_SNP [dm6]	G	A	2.524e^-4	0.679	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	27232436	3R_27232436_SNP [dm3] 3R_31406714_SNP [dm6]	C	T	2.547e^-4	0.679	INTRON Gprk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9247926	3L_9247926_SNP [dm3] 3L_9254826_SNP [dm6]	C	A	2.548e^-4	0.679	INTRON GluRIB
2R	9326594	2R_9326594_SNP [dm3] 2R_13439089_SNP [dm6]	T	A	2.553e^-4	0.679	UPSTREAM CG42321 DOWNSTREAM cnn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9148478	2R_9148478_SNP [dm3] 2R_13260973_SNP [dm6]	G	T	2.554e^-4	0.679	INTRON CG42319
2R	17132540	2R_17132540_SNP [dm3] 2R_21245035_SNP [dm6]	A	T	2.555e^-4	0.679	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
2L	15356806	2L_15356806_MNP [dm3] 2L_15356806_MNP [dm6]	AGAG	GTTA	2.557e^-4	0.679	INTERGENIC
3R	22668777	3R_22668777_SNP [dm3] 3R_26843055_SNP [dm6]	A	T	2.557e^-4	0.679	UTR_3_PRIME Lerp DOWNSTREAM Tl
2L	2430940	2L_2430940_SNP [dm3] 2L_2430940_SNP [dm6]	T	C	2.563e^-4	0.679	INTRON dpp
3R	14059169	3R_14059169_SNP [dm3] 3R_18233447_SNP [dm6]	A	C	2.566e^-4	0.679	INTERGENIC	regulatory region REDfly_CRMs
2R	17018976	2R_17018976_SNP [dm3] 2R_21131471_SNP [dm6]	C	T	2.573e^-4	0.679	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3835203	2R_3835203_SNP [dm3] 2R_7947698_SNP [dm6]	C	A	2.574e^-4	0.679	NON_SYNONYMOUS_CODING CG14764 DOWNSTREAM CG34431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12572640	3L_12572640_SNP [dm3] 3L_12579540_SNP [dm6]	C	T	2.575e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11334482	2L_11334482_INS [dm3] 2L_11334482_INS [dm6]	G	GG	2.581e^-4	0.679	INTERGENIC
2L	21011063	2L_21011063_SNP [dm3] 2L_21011063_SNP [dm6]	G	C	2.583e^-4	0.679	INTRON CG42238
3L	19176522	3L_19176522_SNP [dm3] 3L_19183422_SNP [dm6]	A	C	2.583e^-4	0.679	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3R	4884421	3R_4884421_SNP [dm3] 3R_9058699_SNP [dm6]	C	T	2.585e^-4	0.679	SYNONYMOUS_CODING Kdm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	11519937	X_11519937_SNP [dm3] X_11625904_SNP [dm6]	C	T	2.587e^-4	0.679	INTRON Ptp10D
3R	9292227	3R_9292227_SNP [dm3] 3R_13466505_SNP [dm6]	G	A	2.587e^-4	0.679	UPSTREAM CR17025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14271769	2R_14271769_DEL [dm3] 2R_18384264_DEL [dm6]	GTCTACAAACTAGAACACAA...	G	2.587e^-4	0.679	UTR_3_PRIME IM1 UPSTREAM CG18107 DOWNSTREAM CG15067
3L	23176867	3L_23176867_INS [dm3] 3L_23183767_INS [dm6]	A	AGTTTGTCTCTACGGTTATC...	2.591e^-4	0.679	INTRON CG34031 EXON CR43967	TF binding site BDTNP1_TFBS_dl
3L	21990214	3L_21990214_SNP [dm3] 3L_21997114_SNP [dm6]	G	A	2.595e^-4	0.679	INTERGENIC
3L	2000697	3L_2000697_SNP [dm3] 3L_2000697_SNP [dm6]	T	C	2.596e^-4	0.679	INTERGENIC
2L	20825567	2L_20825567_SNP [dm3] 2L_20825567_SNP [dm6]	T	C	2.600e^-4	0.679	UTR_5_PRIME CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11141003	2R_11141003_SNP [dm3] 2R_15253498_SNP [dm6]	T	C	2.603e^-4	0.679	INTRON scb
3R	26407412	3R_26407412_SNP [dm3] 3R_30581690_SNP [dm6]	T	C	2.615e^-4	0.679	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
3L	16012366	3L_16012366_DEL [dm3] 3L_16019266_DEL [dm6]	TTTATTG	T	2.617e^-4	0.679	UPSTREAM CR43950 INTERGENIC	insulator Insulator_Class_II.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	16012376	3L_16012376_SNP [dm3] 3L_16019276_SNP [dm6]	G	A	2.617e^-4	0.679	UPSTREAM CR43950 INTERGENIC	insulator Insulator_Class_II.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	16012401	3L_16012401_SNP [dm3] 3L_16019301_SNP [dm6]	A	G	2.617e^-4	0.679	UPSTREAM CR43950 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9292149	3R_9292149_SNP [dm3] 3R_13466427_SNP [dm6]	C	T	2.618e^-4	0.679	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12566329	3R_12566329_SNP [dm3] 3R_16740607_SNP [dm6]	G	C	2.623e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2L	11418669	2L_11418669_SNP [dm3] 2L_11418669_SNP [dm6]	G	A	2.624e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25919132	3R_25919132_SNP [dm3] 3R_30093410_SNP [dm6]	A	G	2.627e^-4	0.679	INTRON sima
3R	25919114	3R_25919114_SNP [dm3] 3R_30093392_SNP [dm6]	C	A	2.627e^-4	0.679	INTRON sima
2R	17173632	2R_17173632_SNP [dm3] 2R_21286127_SNP [dm6]	G	A	2.630e^-4	0.679	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2R	6300488	2R_6300488_SNP [dm3] 2R_10412983_SNP [dm6]	C	A	2.642e^-4	0.679	INTRON CG42732	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16450024	3L_16450024_SNP [dm3] 3L_16456924_SNP [dm6]	G	T	2.644e^-4	0.679	INTRON CG33158
2R	9147086	2R_9147086_MNP [dm3] 2R_13259581_MNP [dm6]	CAC	ATA	2.649e^-4	0.679	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	10226883	2R_10226883_SNP [dm3] 2R_14339378_SNP [dm6]	T	A	2.650e^-4	0.679	INTRON Shroom
2R	16988646	2R_16988646_SNP [dm3] 2R_21101141_SNP [dm6]	G	A	2.659e^-4	0.679	NON_SYNONYMOUS_CODING CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	3242594	2L_3242594_SNP [dm3] 2L_3242594_SNP [dm6]	G	T	2.664e^-4	0.679	INTERGENIC
3L	17909009	3L_17909009_SNP [dm3] 3L_17915909_SNP [dm6]	A	T	2.668e^-4	0.679	INTERGENIC	transposable element FlyBase
3L	17909057	3L_17909057_SNP [dm3] 3L_17915957_SNP [dm6]	G	A	2.668e^-4	0.679	INTERGENIC	transposable element FlyBase
2L	17588189	2L_17588189_SNP [dm3] 2L_17588189_SNP [dm6]	C	T	2.676e^-4	0.679	UPSTREAM Oli DOWNSTREAM CR44411 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13480658	2L_13480658_SNP [dm3] 2L_13480658_SNP [dm6]	T	C	2.676e^-4	0.679	INTRON CG42784
2L	7664199	2L_7664199_SNP [dm3] 2L_7664199_SNP [dm6]	G	T	2.680e^-4	0.679	INTRON Slob
3R	13915926	3R_13915926_SNP [dm3] 3R_18090204_SNP [dm6]	T	C	2.682e^-4	0.679	UPSTREAM sr INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7113595	2L_7113595_SNP [dm3] 2L_7113595_SNP [dm6]	A	G	2.684e^-4	0.679	INTRON Pvf3
2L	2624136	2L_2624136_SNP [dm3] 2L_2624136_SNP [dm6]	C	G	2.692e^-4	0.679	INTERGENIC
X	11512730	X_11512730_SNP [dm3] X_11618697_SNP [dm6]	C	G	2.697e^-4	0.679	SYNONYMOUS_CODING Met	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25930070	3R_25930070_SNP [dm3] 3R_30104348_SNP [dm6]	T	C	2.698e^-4	0.679	NON_SYNONYMOUS_CODING sima START_GAINED sima UTR_5_PRIME sima INTRON sima
X	11051264	X_11051264_SNP [dm3] X_11157231_SNP [dm6]	G	A	2.698e^-4	0.679	SYNONYMOUS_CODING CG32668 INTRON Dlic	TF binding site mE1_TFBS_sens
3L	16448530	3L_16448530_INS [dm3] 3L_16455430_INS [dm6]	A	AGTTT	2.700e^-4	0.679	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	995234	3L_995234_SNP [dm3] 3L_995234_SNP [dm6]	T	C	2.701e^-4	0.679	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2L	9460410	2L_9460410_SNP [dm3] 2L_9460410_SNP [dm6]	T	C	2.708e^-4	0.679	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3939669	2L_3939669_SNP [dm3] 2L_3939669_SNP [dm6]	C	A	2.719e^-4	0.679	INTRON fred
3R	13493653	3R_13493653_SNP [dm3] 3R_17667931_SNP [dm6]	T	C	2.721e^-4	0.679	UPSTREAM tRNA:CR31576 DOWNSTREAM CR45045 INTRON CG14322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	10862368	3L_10862368_SNP [dm3] 3L_10869268_SNP [dm6]	T	C	2.722e^-4	0.679	UPSTREAM tna INTRON tna
3R	26410917	3R_26410917_SNP [dm3] 3R_30585195_SNP [dm6]	A	G	2.722e^-4	0.679	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad
3R	11872935	3R_11872935_SNP [dm3] 3R_16047213_SNP [dm6]	G	T	2.724e^-4	0.679	SYNONYMOUS_CODING ird5
3L	3824237	3L_3824237_SNP [dm3] 3L_3824237_SNP [dm6]	T	A	2.727e^-4	0.679	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19283094	2L_19283094_SNP [dm3] 2L_19283094_SNP [dm6]	T	A	2.730e^-4	0.679	INTERGENIC
X	11519899	X_11519899_DEL [dm3] X_11625866_DEL [dm6]	GG	G	2.736e^-4	0.679	INTRON Ptp10D
2R	9147098	2R_9147098_SNP [dm3] 2R_13259593_SNP [dm6]	C	T	2.741e^-4	0.679	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	11691263	2R_11691263_SNP [dm3] 2R_15803758_SNP [dm6]	G	T	2.743e^-4	0.679	INTRON tun & 1 other
2L	11489507	2L_11489507_SNP [dm3] 2L_11489507_SNP [dm6]	A	G	2.745e^-4	0.679	INTERGENIC
2R	13381480	2R_13381480_SNP [dm3] 2R_17493975_SNP [dm6]	G	T	2.746e^-4	0.679	SYNONYMOUS_CODING CG30103 DOWNSTREAM NT5E-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7798990	3L_7798990_SNP [dm3] 3L_7805890_SNP [dm6]	A	C	2.752e^-4	0.679	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14093494	3R_14093494_SNP [dm3] 3R_18267772_SNP [dm6]	C	T	2.760e^-4	0.679	UPSTREAM CG18599 INTERGENIC	TF binding site mE1_TFBS_run
X	5980874	X_5980874_SNP [dm3] X_6086841_SNP [dm6]	A	G	2.761e^-4	0.679	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25918808	3R_25918808_SNP [dm3] 3R_30093086_SNP [dm6]	T	C	2.764e^-4	0.679	INTRON sima
X	8217198	X_8217198_SNP [dm3] X_8323165_SNP [dm6]	A	C	2.767e^-4	0.679	INTRON nAChRalpha3
3L	730003	3L_730003_SNP [dm3] 3L_730003_SNP [dm6]	C	G	2.772e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10238614	3R_10238614_SNP [dm3] 3R_14412892_SNP [dm6]	G	T	2.773e^-4	0.679	INTRON cv-c
2R	6037963	2R_6037963_SNP [dm3] 2R_10150458_SNP [dm6]	A	T	2.775e^-4	0.679	INTRON KCNQ
2R	12024031	2R_12024031_SNP [dm3] 2R_16136526_SNP [dm6]	T	C	2.776e^-4	0.679	SYNONYMOUS_CODING spin UTR_3_PRIME spin
2L	9458778	2L_9458778_SNP [dm3] 2L_9458778_SNP [dm6]	A	C	2.784e^-4	0.679	INTRON numb
3L	3986843	3L_3986843_SNP [dm3] 3L_3986843_SNP [dm6]	T	C	2.784e^-4	0.679	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	9677391	2L_9677391_SNP [dm3] 2L_9677391_SNP [dm6]	T	A	2.788e^-4	0.679	INTERGENIC
3R	24228738	3R_24228738_SNP [dm3] 3R_28403016_SNP [dm6]	C	T	2.792e^-4	0.679	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14983514	3L_14983514_SNP [dm3] 3L_14990414_SNP [dm6]	C	T	2.793e^-4	0.679	SYNONYMOUS_CODING mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_hkb mE1_TFBS_HSA
2R	15035075	2R_15035075_DEL [dm3] 2R_19147570_DEL [dm6]	TATAC	T	2.798e^-4	0.679	INTRON ena
3L	16948942	3L_16948942_SNP [dm3] 3L_16955842_SNP [dm6]	T	A	2.800e^-4	0.679	INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
2R	16175771	2R_16175771_SNP [dm3] 2R_20288266_SNP [dm6]	A	T	2.811e^-4	0.68	UTR_3_PRIME CG34199 DOWNSTREAM Cpr56F
2R	14141249	2R_14141249_SNP [dm3] 2R_18253744_SNP [dm6]	C	T	2.819e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5583647	3L_5583647_INS [dm3] 3L_5590547_INS [dm6]	T	TGAAACCGAAGTTCCGATAC...	2.821e^-4	0.68	UTR_3_PRIME spo DOWNSTREAM l_3_psg2
X	4271166	X_4271166_DEL [dm3] X_4377133_DEL [dm6]	TTC	T	2.821e^-4	0.68	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14196801	3R_14196801_SNP [dm3] 3R_18371079_SNP [dm6]	C	G	2.827e^-4	0.68	INTRON gl	TF binding site BDTNP1_TFBS_dl
3R	13416674	3R_13416674_SNP [dm3] 3R_17590952_SNP [dm6]	G	A	2.837e^-4	0.68	INTERGENIC
2L	7245809	2L_7245809_SNP [dm3] 2L_7245809_SNP [dm6]	T	C	2.838e^-4	0.68	UPSTREAM Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4681946	3L_4681946_SNP [dm3] 3L_4681946_SNP [dm6]	A	G	2.848e^-4	0.68	UPSTREAM axo INTRON axo
3L	13192935	3L_13192935_SNP [dm3] 3L_13199835_SNP [dm6]	C	T	2.851e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	15493856	2L_15493856_SNP [dm3] 2L_15493856_SNP [dm6]	A	T	2.855e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24204667	3R_24204667_SNP [dm3] 3R_28378945_SNP [dm6]	C	T	2.862e^-4	0.68	INTERGENIC
2L	3887588	2L_3887588_SNP [dm3] 2L_3887588_SNP [dm6]	C	T	2.863e^-4	0.68	SYNONYMOUS_CODING capu INTRON capu
2R	10214956	2R_10214956_SNP [dm3] 2R_14327451_SNP [dm6]	G	A	2.880e^-4	0.68	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13701765	2L_13701765_SNP [dm3] 2L_13701765_SNP [dm6]	A	C	2.885e^-4	0.68	INTRON CG31814
3L	2181875	3L_2181875_SNP [dm3] 3L_2181875_SNP [dm6]	C	T	2.887e^-4	0.68	INTERGENIC
2L	19232925	2L_19232925_SNP [dm3] 2L_19232925_SNP [dm6]	T	A	2.890e^-4	0.68	INTERGENIC
2R	10640391	2R_10640391_SNP [dm3] 2R_14752886_SNP [dm6]	A	C	2.890e^-4	0.68	START_GAINED Rpn6 UTR_5_PRIME Rpn6 UPSTREAM Rpn6 DOWNSTREAM CG10151 INTRON ave	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	14096102	3L_14096102_SNP [dm3] 3L_14103002_SNP [dm6]	A	C	2.901e^-4	0.68	DOWNSTREAM Sox21a INTERGENIC
3R	26454197	3R_26454197_SNP [dm3] 3R_30628475_SNP [dm6]	T	C	2.904e^-4	0.68	SYNONYMOUS_CODING CG2267
X	8618518	X_8618518_SNP [dm3] X_8724485_SNP [dm6]	A	T	2.904e^-4	0.68	UPSTREAM CR43297 INTERGENIC
3L	7449822	3L_7449822_SNP [dm3] 3L_7456722_SNP [dm6]	A	G	2.905e^-4	0.68	SYNONYMOUS_CODING ppk26
3L	2515414	3L_2515414_SNP [dm3] 3L_2515414_SNP [dm6]	C	A	2.908e^-4	0.68	INTRON Spn
3R	23379711	3R_23379711_SNP [dm3] 3R_27553989_SNP [dm6]	A	G	2.912e^-4	0.68	INTRON Klp98A
3R	14196891	3R_14196891_SNP [dm3] 3R_18371169_SNP [dm6]	T	G	2.920e^-4	0.68	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1290539	2R_1290539_SNP [dm3] 2R_5403034_SNP [dm6]	G	A	2.924e^-4	0.68	INTERGENIC	transposable element FlyBase
2R	15598041	2R_15598041_SNP [dm3] 2R_19710536_SNP [dm6]	G	A	2.924e^-4	0.68	INTERGENIC	regulatory region REDfly_CRMs
2R	12008941	2R_12008941_SNP [dm3] 2R_16121436_SNP [dm6]	A	T	2.925e^-4	0.68	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
3L	14894908	3L_14894908_SNP [dm3] 3L_14901808_SNP [dm6]	A	C	2.926e^-4	0.68	INTERGENIC
2R	12038770	2R_12038770_SNP [dm3] 2R_16151265_SNP [dm6]	C	T	2.929e^-4	0.68	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10875196	3L_10875196_SNP [dm3] 3L_10882096_SNP [dm6]	C	T	2.934e^-4	0.68	UTR_5_PRIME CG6409 UPSTREAM CG7949 & 1 other
2R	10167692	2R_10167692_SNP [dm3] 2R_14280187_SNP [dm6]	C	T	2.942e^-4	0.68	INTRON Ih
2L	9460872	2L_9460872_SNP [dm3] 2L_9460872_SNP [dm6]	C	A	2.943e^-4	0.68	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7335039	3L_7335039_SNP [dm3] 3L_7341939_SNP [dm6]	T	A	2.946e^-4	0.68	UTR_3_PRIME CG8596 DOWNSTREAM lark	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25930705	3R_25930705_DEL [dm3] 3R_30104983_DEL [dm6]	ATGGCAACGTA...	A	2.949e^-4	0.68	INTRON sima
3R	14180455	3R_14180455_SNP [dm3] 3R_18354733_SNP [dm6]	C	T	2.957e^-4	0.68	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7799243	3L_7799243_SNP [dm3] 3L_7806143_SNP [dm6]	T	G	2.962e^-4	0.68	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	16448501	3L_16448501_SNP [dm3] 3L_16455401_SNP [dm6]	T	A	2.973e^-4	0.68	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18638347	2R_18638347_SNP [dm3] 2R_22750842_SNP [dm6]	G	T	2.976e^-4	0.68	INTRON CG42260	TF binding site mE1_TFBS_inv
3L	13936409	3L_13936409_SNP [dm3] 3L_13943309_SNP [dm6]	G	A	2.976e^-4	0.68	INTRON CG32137
2R	19779911	2R_19779911_SNP [dm3] 2R_23892388_SNP [dm6]	C	T	2.987e^-4	0.68	SYNONYMOUS_CODING DNA-ligI DOWNSTREAM Upf3	TF binding site mE1_TFBS_sens
2L	11883587	2L_11883587_SNP [dm3] 2L_11883587_SNP [dm6]	A	G	2.991e^-4	0.68	INTRON Pde1c
2R	16326361	2R_16326361_SNP [dm3] 2R_20438856_SNP [dm6]	T	C	2.992e^-4	0.68	INTRON CG12484
2L	15493861	2L_15493861_SNP [dm3] 2L_15493861_SNP [dm6]	A	G	2.994e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8087631	3L_8087631_SNP [dm3] 3L_8094531_SNP [dm6]	T	C	2.994e^-4	0.68	INTRON Ect4
X	3532686	X_3532686_DEL [dm3] X_3638653_DEL [dm6]	TTGTTT	T	2.998e^-4	0.68	INTRON AstA-R1
3L	8401047	3L_8401047_SNP [dm3] 3L_8407947_SNP [dm6]	T	A	3.002e^-4	0.68	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
2L	7459706	2L_7459706_SNP [dm3] 2L_7459706_SNP [dm6]	A	T	3.010e^-4	0.68	UPSTREAM Gr28b INTRON Gr28b
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	3.012e^-4	0.68	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	21840084	3R_21840084_SNP [dm3] 3R_26014362_SNP [dm6]	C	T	3.013e^-4	0.68	UPSTREAM Kaz-m1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	995557	3L_995557_SNP [dm3] 3L_995557_SNP [dm6]	G	A	3.025e^-4	0.68	UTR_3_PRIME CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2L	18418014	2L_18418014_SNP [dm3] 2L_18418014_SNP [dm6]	G	A	3.025e^-4	0.68	INTERGENIC
2R	19091870	2R_19091870_SNP [dm3] 2R_23204347_SNP [dm6]	G	T	3.030e^-4	0.68	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	19091871	2R_19091871_SNP [dm3] 2R_23204348_SNP [dm6]	C	A	3.030e^-4	0.68	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8930567	2R_8930567_DEL [dm3] 2R_13043062_DEL [dm6]	GG	G	3.050e^-4	0.68	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	7107370	2R_7107370_SNP [dm3] 2R_11219865_SNP [dm6]	G	A	3.056e^-4	0.68	UPSTREAM Syx6 & 1 other INTRON Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	9093132	X_9093132_SNP [dm3] X_9199099_SNP [dm6]	A	G	3.060e^-4	0.68	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14196778	3R_14196778_DEL [dm3] 3R_18371056_DEL [dm6]	TGGGT	T	3.062e^-4	0.68	INTRON gl	TF binding site BDTNP1_TFBS_dl
2R	14754280	2R_14754280_SNP [dm3] 2R_18866775_SNP [dm6]	A	G	3.068e^-4	0.68	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
3L	18316739	3L_18316739_SNP [dm3] 3L_18323639_SNP [dm6]	G	C	3.068e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15569340	2R_15569340_SNP [dm3] 2R_19681835_SNP [dm6]	A	C	3.069e^-4	0.68	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
X	10818356	X_10818356_SNP [dm3] X_10924323_SNP [dm6]	A	T	3.072e^-4	0.68	DOWNSTREAM CG43901 INTRON v	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9147125	2R_9147125_SNP [dm3] 2R_13259620_SNP [dm6]	G	T	3.073e^-4	0.68	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	10215108	3R_10215108_SNP [dm3] 3R_14389386_SNP [dm6]	C	T	3.077e^-4	0.68	INTERGENIC
2L	15493857	2L_15493857_SNP [dm3] 2L_15493857_SNP [dm6]	T	G	3.078e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9147152	2R_9147152_SNP [dm3] 2R_13259647_SNP [dm6]	A	T	3.086e^-4	0.68	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	16082557	2L_16082557_SNP [dm3] 2L_16082557_SNP [dm6]	T	C	3.090e^-4	0.68	DOWNSTREAM beat-Ia INTERGENIC
2R	18393942	2R_18393942_SNP [dm3] 2R_22506437_SNP [dm6]	G	T	3.090e^-4	0.68	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17379085	3R_17379085_SNP [dm3] 3R_21553363_SNP [dm6]	A	G	3.091e^-4	0.68	INTRON slou
2L	5818876	2L_5818876_SNP [dm3] 2L_5818876_SNP [dm6]	C	T	3.093e^-4	0.68	UPSTREAM CG31644 INTERGENIC
3R	25929573	3R_25929573_SNP [dm3] 3R_30103851_SNP [dm6]	G	A	3.094e^-4	0.68	INTRON sima
X	2472983	X_2472983_SNP [dm3] X_2578950_SNP [dm6]	T	A	3.099e^-4	0.68	DOWNSTREAM Vha36-3 & 1 other INTERGENIC
3L	11039230	3L_11039230_SNP [dm3] 3L_11046130_SNP [dm6]	C	A	3.100e^-4	0.68	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16022511	2L_16022511_SNP [dm3] 2L_16022511_SNP [dm6]	C	A	3.107e^-4	0.68	INTRON beat-Ic
3L	24137856	3L_24137856_SNP [dm3] 3L_24144756_SNP [dm6]	T	A	3.114e^-4	0.68	INTRON Snap25
3L	589755	3L_589755_SNP [dm3] 3L_589755_SNP [dm6]	C	T	3.115e^-4	0.68	UPSTREAM Kah INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11142376	3L_11142376_SNP [dm3] 3L_11149276_SNP [dm6]	G	A	3.119e^-4	0.68	DOWNSTREAM CG6216 INTRON CG32082
2L	16176557	2L_16176557_INS [dm3] 2L_16176557_INS [dm6]	A	AA	3.121e^-4	0.68	INTRON Ca-alpha1D
2L	2249190	2L_2249190_SNP [dm3] 2L_2249190_SNP [dm6]	C	A	3.127e^-4	0.68	INTERGENIC
2L	12285936	2L_12285936_SNP [dm3] 2L_12285936_SNP [dm6]	T	C	3.127e^-4	0.68	INTRON aret
2L	10137806	2L_10137806_SNP [dm3] 2L_10137806_SNP [dm6]	G	T	3.129e^-4	0.68	INTRON CG44153
3R	26412140	3R_26412140_SNP [dm3] 3R_30586418_SNP [dm6]	T	G	3.132e^-4	0.68	SYNONYMOUS_CODING CG9717
2R	8930554	2R_8930554_SNP [dm3] 2R_13043049_SNP [dm6]	A	C	3.142e^-4	0.68	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	15990279	2L_15990279_INS [dm3] 2L_15990279_INS [dm6]	C	CAT	3.148e^-4	0.68	DOWNSTREAM CR43412 INTERGENIC
3R	15254317	3R_15254317_DEL [dm3] 3R_19428595_DEL [dm6]	GAT	G	3.150e^-4	0.68	INTRON CG31221
3L	4706223	3L_4706223_SNP [dm3] 3L_4706223_SNP [dm6]	G	A	3.155e^-4	0.68	INTRON RhoGEF64C
3R	26407772	3R_26407772_SNP [dm3] 3R_30582050_SNP [dm6]	A	G	3.159e^-4	0.68	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
2L	1881594	2L_1881594_SNP [dm3] 2L_1881594_SNP [dm6]	G	T	3.160e^-4	0.68	UPSTREAM CG31663 DOWNSTREAM CG15358 INTERGENIC
3R	25919178	3R_25919178_SNP [dm3] 3R_30093456_SNP [dm6]	A	G	3.168e^-4	0.68	INTRON sima
3L	20685769	3L_20685769_SNP [dm3] 3L_20692669_SNP [dm6]	C	A	3.168e^-4	0.68	UTR_3_PRIME kni	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8874458	3L_8874458_SNP [dm3] 3L_8881358_SNP [dm6]	C	T	3.171e^-4	0.68	INTRON dally
3R	17264096	3R_17264096_SNP [dm3] 3R_21438374_SNP [dm6]	G	A	3.175e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	10708193	3R_10708193_SNP [dm3] 3R_14882471_SNP [dm6]	A	T	3.183e^-4	0.68	UTR_3_PRIME CG3631 DOWNSTREAM Rrp6
2R	8930603	2R_8930603_SNP [dm3] 2R_13043098_SNP [dm6]	T	C	3.188e^-4	0.68	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	16978038	X_16978038_SNP [dm3] X_17084005_SNP [dm6]	G	C	3.188e^-4	0.68	DOWNSTREAM CG4955 INTRON CG8945
2R	16659628	2R_16659628_INS [dm3] 2R_20772123_INS [dm6]	A	TTCGG	3.195e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	992195	3L_992195_SNP [dm3] 3L_992195_SNP [dm6]	A	G	3.195e^-4	0.68	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2R	14318570	2R_14318570_SNP [dm3] 2R_18431065_SNP [dm6]	C	T	3.205e^-4	0.68	UTR_3_PRIME CG30118 DOWNSTREAM CG12263 INTRON CG30118
2R	15569309	2R_15569309_SNP [dm3] 2R_19681804_SNP [dm6]	T	C	3.207e^-4	0.68	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
2R	3840195	2R_3840195_SNP [dm3] 2R_7952690_SNP [dm6]	T	C	3.208e^-4	0.68	INTRON CG14764
3R	8049974	3R_8049974_INS [dm3] 3R_12224252_INS [dm6]	G	GATTGTGTTGG...	3.211e^-4	0.68	DOWNSTREAM CG10014 INTRON CG17404	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8217204	X_8217204_SNP [dm3] X_8323171_SNP [dm6]	A	C	3.215e^-4	0.68	INTRON nAChRalpha3
X	6323115	X_6323115_SNP [dm3] X_6429082_SNP [dm6]	T	G	3.220e^-4	0.68	INTRON CG42340
2R	18610843	2R_18610843_SNP [dm3] 2R_22723338_SNP [dm6]	G	T	3.225e^-4	0.68	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	10931938	2L_10931938_SNP [dm3] 2L_10931938_SNP [dm6]	T	C	3.233e^-4	0.68	INTRON dpr2
X	5290050	X_5290050_SNP [dm3] X_5396017_SNP [dm6]	A	C	3.236e^-4	0.68	INTRON SK
3L	4373050	3L_4373050_INS [dm3] 3L_4373050_INS [dm6]	A	AA	3.239e^-4	0.68	INTRON DopEcR	TF binding site mE1_TFBS_cad
2L	5210930	2L_5210930_SNP [dm3] 2L_5210930_SNP [dm6]	T	C	3.239e^-4	0.68	INTRON Cyp28d1
2R	18915452	2R_18915452_SNP [dm3] 2R_23027929_SNP [dm6]	G	T	3.247e^-4	0.68	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
2R	15569407	2R_15569407_DEL [dm3] 2R_19681902_DEL [dm6]	ATTAAACTT	G	3.247e^-4	0.68	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15569417	2R_15569417_SNP [dm3] 2R_19681912_SNP [dm6]	G	A	3.247e^-4	0.68	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
2R	13131301	2R_13131301_SNP [dm3] 2R_17243796_SNP [dm6]	A	C	3.249e^-4	0.68	INTRON mbl
2R	13131305	2R_13131305_SNP [dm3] 2R_17243800_SNP [dm6]	A	T	3.249e^-4	0.68	INTRON mbl	TF binding site mE1_TFBS_inv
2R	13666139	2R_13666139_SNP [dm3] 2R_17778634_SNP [dm6]	G	A	3.255e^-4	0.68	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22150791	3R_22150791_SNP [dm3] 3R_26325069_SNP [dm6]	A	G	3.260e^-4	0.68	INTRON CG33970 EXON CR42765
2R	15569439	2R_15569439_SNP [dm3] 2R_19681934_SNP [dm6]	A	G	3.265e^-4	0.68	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2363986	3L_2363986_INS [dm3] 3L_2363986_INS [dm6]	G	GG	3.266e^-4	0.68	INTERGENIC
2L	16554154	2L_16554154_INS [dm3] 2L_16554154_INS [dm6]	T	TT	3.267e^-4	0.68	INTRON CG42389
3R	23379685	3R_23379685_SNP [dm3] 3R_27553963_SNP [dm6]	T	A	3.268e^-4	0.68	INTRON Klp98A
3L	16721057	3L_16721057_SNP [dm3] 3L_16727957_SNP [dm6]	A	C	3.277e^-4	0.68	NON_SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad
X	13497473	X_13497473_SNP [dm3] X_13603440_SNP [dm6]	C	T	3.286e^-4	0.68	UPSTREAM up & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9515559	2L_9515559_SNP [dm3] 2L_9515559_SNP [dm6]	G	T	3.292e^-4	0.68	SPLICE_SITE_REGION CG33298 INTRON CG33298
2R	15597893	2R_15597893_SNP [dm3] 2R_19710388_SNP [dm6]	C	T	3.292e^-4	0.68	INTERGENIC	regulatory region REDfly_CRMs
2R	18392310	2R_18392310_SNP [dm3] 2R_22504805_SNP [dm6]	C	A	3.293e^-4	0.68	INTRON px	TF binding site mE1_TFBS_HSA
3L	19364076	3L_19364076_SNP [dm3] 3L_19370976_SNP [dm6]	T	A	3.293e^-4	0.68	INTRON CG32206
2L	11489513	2L_11489513_SNP [dm3] 2L_11489513_SNP [dm6]	A	T	3.293e^-4	0.68	INTERGENIC
3L	7327050	3L_7327050_DEL [dm3] 3L_7333950_DEL [dm6]	TG	C	3.293e^-4	0.68	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad
2L	11884004	2L_11884004_SNP [dm3] 2L_11884004_SNP [dm6]	G	A	3.302e^-4	0.68	INTRON Pde1c
2L	7745379	2L_7745379_SNP [dm3] 2L_7745379_SNP [dm6]	G	A	3.304e^-4	0.68	UPSTREAM CG7214 INTERGENIC
3L	12572638	3L_12572638_SNP [dm3] 3L_12579538_SNP [dm6]	T	C	3.305e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10428597	3R_10428597_SNP [dm3] 3R_14602875_SNP [dm6]	G	A	3.305e^-4	0.68	UPSTREAM stumps INTRON stumps
X	8130807	X_8130807_SNP [dm3] X_8236774_SNP [dm6]	A	G	3.306e^-4	0.68	SYNONYMOUS_CODING sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14099866	3L_14099866_SNP [dm3] 3L_14106766_SNP [dm6]	C	T	3.312e^-4	0.68	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13390769	2L_13390769_SNP [dm3] 2L_13390769_SNP [dm6]	A	T	3.314e^-4	0.68	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8733445	2R_8733445_SNP [dm3] 2R_12845940_SNP [dm6]	A	C	3.314e^-4	0.68	DOWNSTREAM antr INTRON CG17575	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23952118	3R_23952118_SNP [dm3] 3R_28126396_SNP [dm6]	G	C	3.316e^-4	0.68	INTERGENIC
3L	2471233	3L_2471233_SNP [dm3] 3L_2471233_SNP [dm6]	A	G	3.319e^-4	0.68	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	16162086	X_16162086_SNP [dm3] X_16268053_SNP [dm6]	C	A	3.322e^-4	0.68	INTRON kat80
3R	15833062	3R_15833062_INS [dm3] 3R_20007340_INS [dm6]	T	TAT	3.322e^-4	0.68	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16654237	2R_16654237_SNP [dm3] 2R_20766732_SNP [dm6]	T	G	3.328e^-4	0.68	EXON CR44665
3L	8874389	3L_8874389_SNP [dm3] 3L_8881289_SNP [dm6]	C	T	3.331e^-4	0.68	INTRON dally
X	13396772	X_13396772_DEL [dm3] X_13502739_DEL [dm6]	CC	C	3.333e^-4	0.68	INTRON Neto
3L	4410601	3L_4410601_SNP [dm3] 3L_4410601_SNP [dm6]	T	C	3.334e^-4	0.68	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	9627055	3L_9627055_SNP [dm3] 3L_9633955_SNP [dm6]	G	A	3.335e^-4	0.68	INTRON fry	TF binding site mE1_TFBS_cad
3L	7846138	3L_7846138_SNP [dm3] 3L_7853038_SNP [dm6]	C	T	3.335e^-4	0.68	INTRON Pdp1
3L	16448524	3L_16448524_SNP [dm3] 3L_16455424_SNP [dm6]	C	A	3.337e^-4	0.68	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24205244	3R_24205244_SNP [dm3] 3R_28379522_SNP [dm6]	C	A	3.338e^-4	0.68	INTERGENIC
3R	11598521	3R_11598521_SNP [dm3] 3R_15772799_SNP [dm6]	C	T	3.341e^-4	0.68	INTERGENIC
3R	4922394	3R_4922394_SNP [dm3] 3R_9096672_SNP [dm6]	G	T	3.350e^-4	0.68	INTRON pum
3L	17908996	3L_17908996_INS [dm3] 3L_17915896_INS [dm6]	A	AGGAATATA	3.351e^-4	0.68	INTERGENIC	transposable element FlyBase
3L	17909002	3L_17909002_SNP [dm3] 3L_17915902_SNP [dm6]	A	G	3.351e^-4	0.68	INTERGENIC	transposable element FlyBase
3L	17909013	3L_17909013_SNP [dm3] 3L_17915913_SNP [dm6]	A	G	3.351e^-4	0.68	INTERGENIC	transposable element FlyBase
2R	20228767	2R_20228767_SNP [dm3] 2R_24341244_SNP [dm6]	C	G	3.354e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9777329	3L_9777329_SNP [dm3] 3L_9784229_SNP [dm6]	T	G	3.362e^-4	0.68	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14373523	2R_14373523_SNP [dm3] 2R_18486018_SNP [dm6]	G	A	3.368e^-4	0.68	INTRON CG30116
3L	18317048	3L_18317048_SNP [dm3] 3L_18323948_SNP [dm6]	A	G	3.371e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15608171	3L_15608171_SNP [dm3] 3L_15615071_SNP [dm6]	G	A	3.372e^-4	0.68	INTRON comm3
2R	14993050	2R_14993050_SNP [dm3] 2R_19105545_SNP [dm6]	A	C	3.374e^-4	0.68	INTRON 5-HT1A
X	16791438	X_16791438_SNP [dm3] X_16897405_SNP [dm6]	C	T	3.378e^-4	0.68	UPSTREAM CG33252 INTERGENIC
3R	16915135	3R_16915135_SNP [dm3] 3R_21089413_SNP [dm6]	C	T	3.378e^-4	0.68	INTRON RhoGAP93B & 1 other
2L	16560420	2L_16560420_SNP [dm3] 2L_16560420_SNP [dm6]	G	T	3.381e^-4	0.68	INTRON CG42389
2L	14866127	2L_14866127_SNP [dm3] 2L_14866127_SNP [dm6]	C	T	3.388e^-4	0.68	INTERGENIC
2R	1349361	2R_1349361_SNP [dm3] 2R_5461856_SNP [dm6]	C	T	3.394e^-4	0.68	INTERGENIC	transposable element FlyBase
3L	3986847	3L_3986847_SNP [dm3] 3L_3986847_SNP [dm6]	T	C	3.395e^-4	0.68	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	26411574	3R_26411574_SNP [dm3] 3R_30585852_SNP [dm6]	T	C	3.399e^-4	0.68	INTRON CG9717
3R	26411576	3R_26411576_SNP [dm3] 3R_30585854_SNP [dm6]	A	T	3.399e^-4	0.68	INTRON CG9717
X	16155306	X_16155306_SNP [dm3] X_16261273_SNP [dm6]	T	C	3.420e^-4	0.683	INTERGENIC
3R	5798909	3R_5798909_SNP [dm3] 3R_9973187_SNP [dm6]	G	C	3.421e^-4	0.683	INTRON Glut4EF
2R	13094372	2R_13094372_SNP [dm3] 2R_17206867_SNP [dm6]	T	C	3.427e^-4	0.683	INTERGENIC
2L	10180856	2L_10180856_SNP [dm3] 2L_10180856_SNP [dm6]	C	T	3.433e^-4	0.683	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17076368	2R_17076368_SNP [dm3] 2R_21188863_SNP [dm6]	C	T	3.437e^-4	0.683	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3L	8874423	3L_8874423_SNP [dm3] 3L_8881323_SNP [dm6]	G	C	3.442e^-4	0.683	INTRON dally
3L	2000670	3L_2000670_SNP [dm3] 3L_2000670_SNP [dm6]	T	C	3.451e^-4	0.683	INTERGENIC
2R	20240991	2R_20240991_SNP [dm3] 2R_24353468_SNP [dm6]	G	A	3.454e^-4	0.683	INTRON bs & 1 other
3L	9627046	3L_9627046_SNP [dm3] 3L_9633946_SNP [dm6]	G	A	3.460e^-4	0.683	INTRON fry	TF binding site mE1_TFBS_cad
2L	6523956	2L_6523956_SNP [dm3] 2L_6523956_SNP [dm6]	A	T	3.460e^-4	0.683	INTRON CG31637
2R	10494625	2R_10494625_SNP [dm3] 2R_14607120_SNP [dm6]	G	A	3.462e^-4	0.683	UPSTREAM CG33469 & 1 other DOWNSTREAM Su_var_2-HP2 INTERGENIC
3R	17296004	3R_17296004_SNP [dm3] 3R_21470282_SNP [dm6]	A	G	3.466e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21282424	X_21282424_SNP [dm3] X_21411397_SNP [dm6]	C	A	3.469e^-4	0.683	UPSTREAM CR45003 INTERGENIC
3L	995740	3L_995740_SNP [dm3] 3L_995740_SNP [dm6]	A	G	3.471e^-4	0.683	DOWNSTREAM trio & 1 other INTERGENIC
2R	15410059	2R_15410059_SNP [dm3] 2R_19522554_SNP [dm6]	A	T	3.474e^-4	0.683	UTR_3_PRIME sm
3R	14059114	3R_14059114_SNP [dm3] 3R_18233392_SNP [dm6]	A	T	3.476e^-4	0.683	INTERGENIC	regulatory region REDfly_CRMs
2R	14366514	2R_14366514_SNP [dm3] 2R_18479009_SNP [dm6]	A	G	3.481e^-4	0.683	INTRON CG30116
2L	19310403	2L_19310403_SNP [dm3] 2L_19310403_SNP [dm6]	C	T	3.481e^-4	0.683	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7999155	3R_7999155_SNP [dm3] 3R_12173433_SNP [dm6]	T	C	3.500e^-4	0.684	INTERGENIC
2L	14142661	2L_14142661_SNP [dm3] 2L_14142661_SNP [dm6]	T	C	3.514e^-4	0.684	INTRON CG17341
3R	14202483	3R_14202483_SNP [dm3] 3R_18376761_SNP [dm6]	T	C	3.515e^-4	0.684	DOWNSTREAM CR44946 INTERGENIC
3R	20237579	3R_20237579_SNP [dm3] 3R_24411857_SNP [dm6]	C	T	3.516e^-4	0.684	INTRON nAChRalpha1
2R	14821929	2R_14821929_SNP [dm3] 2R_18934424_SNP [dm6]	G	A	3.518e^-4	0.684	INTRON sano
3R	5800621	3R_5800621_SNP [dm3] 3R_9974899_SNP [dm6]	G	C	3.525e^-4	0.684	INTRON Glut4EF
2L	19232914	2L_19232914_SNP [dm3] 2L_19232914_SNP [dm6]	G	C	3.528e^-4	0.684	INTERGENIC
3L	5774645	3L_5774645_SNP [dm3] 3L_5781545_SNP [dm6]	T	A	3.532e^-4	0.684	SPLICE_SITE_REGION PGRP-LD & 1 other UTR_5_PRIME PGRP-LD UTR_3_PRIME Pmi UPSTREAM CR45026 INTRON PGRP-LD & 1 other
X	15811757	X_15811757_SNP [dm3] X_15917724_SNP [dm6]	C	T	3.533e^-4	0.684	SYNONYMOUS_CODING CG8909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4547630	X_4547630_SNP [dm3] X_4653597_SNP [dm6]	T	G	3.541e^-4	0.684	NON_SYNONYMOUS_CODING CG15473 INTRON Cbp80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4410596	3L_4410596_SNP [dm3] 3L_4410596_SNP [dm6]	T	A	3.543e^-4	0.684	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	15596631	2L_15596631_SNP [dm3] 2L_15596631_SNP [dm6]	C	A	3.549e^-4	0.684	INTERGENIC
2R	14142331	2R_14142331_SNP [dm3] 2R_18254826_SNP [dm6]	C	A	3.556e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11052163	X_11052163_SNP [dm3] X_11158130_SNP [dm6]	T	G	3.561e^-4	0.684	INTRON Dlic & 1 other	TF binding site mE1_TFBS_inv
3L	995213	3L_995213_SNP [dm3] 3L_995213_SNP [dm6]	C	T	3.565e^-4	0.684	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	12530033	2R_12530033_SNP [dm3] 2R_16642528_SNP [dm6]	T	G	3.575e^-4	0.684	INTRON gprs
2R	9147061	2R_9147061_SNP [dm3] 2R_13259556_SNP [dm6]	T	A	3.576e^-4	0.684	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	9425046	3L_9425046_SNP [dm3] 3L_9431946_SNP [dm6]	T	A	3.578e^-4	0.684	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17007592	3R_17007592_SNP [dm3] 3R_21181870_SNP [dm6]	T	A	3.582e^-4	0.684	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
3L	8875389	3L_8875389_SNP [dm3] 3L_8882289_SNP [dm6]	C	T	3.588e^-4	0.684	INTRON dally
2R	14945756	2R_14945756_SNP [dm3] 2R_19058251_SNP [dm6]	A	T	3.589e^-4	0.684	INTERGENIC
3L	995066	3L_995066_SNP [dm3] 3L_995066_SNP [dm6]	G	A	3.589e^-4	0.684	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3L	7083141	3L_7083141_SNP [dm3] 3L_7090041_SNP [dm6]	A	G	3.591e^-4	0.684	INTERGENIC
3L	4410589	3L_4410589_SNP [dm3] 3L_4410589_SNP [dm6]	T	G	3.592e^-4	0.684	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15569323	2R_15569323_SNP [dm3] 2R_19681818_SNP [dm6]	C	A	3.593e^-4	0.684	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
X	3023333	X_3023333_SNP [dm3] X_3129300_SNP [dm6]	G	A	3.594e^-4	0.684	NON_SYNONYMOUS_CODING kirre
2L	8377363	2L_8377363_SNP [dm3] 2L_8377363_SNP [dm6]	C	A	3.597e^-4	0.684	SYNONYMOUS_CODING CG17294 UPSTREAM CG13390 DOWNSTREAM Aats-ala	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6384780	3L_6384780_MNP [dm3] 3L_6391680_MNP [dm6]	CGG	AAA	3.599e^-4	0.684	INTERGENIC
3R	26407430	3R_26407430_SNP [dm3] 3R_30581708_SNP [dm6]	A	G	3.600e^-4	0.684	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
2R	15569312	2R_15569312_SNP [dm3] 2R_19681807_SNP [dm6]	T	C	3.606e^-4	0.684	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
3L	9424060	3L_9424060_SNP [dm3] 3L_9430960_SNP [dm6]	G	A	3.612e^-4	0.684	NON_SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14337171	3L_14337171_SNP [dm3] 3L_14344071_SNP [dm6]	A	T	3.613e^-4	0.684	INTRON fz
2R	16098791	2R_16098791_SNP [dm3] 2R_20211286_SNP [dm6]	A	C	3.614e^-4	0.684	DOWNSTREAM CG16894 INTERGENIC
3R	18813750	3R_18813750_SNP [dm3] 3R_22988028_SNP [dm6]	A	G	3.616e^-4	0.684	INTRON Nha2 & 1 other
X	11513427	X_11513427_DEL [dm3] X_11619394_DEL [dm6]	TT	T	3.616e^-4	0.684	UTR_3_PRIME Met
2R	10226955	2R_10226955_DEL [dm3] 2R_14339450_DEL [dm6]	CC	C	3.622e^-4	0.684	INTRON Shroom
X	2874433	X_2874433_SNP [dm3] X_2980400_SNP [dm6]	T	G	3.629e^-4	0.684	INTRON kirre	regulatory region REDfly_CRMs
3L	23043782	3L_23043782_INS [dm3] 3L_23050682_INS [dm6]	C	CCCTCCAGAC	3.630e^-4	0.684	INTERGENIC	transposable element FlyBase
3L	13936340	3L_13936340_SNP [dm3] 3L_13943240_SNP [dm6]	G	A	3.630e^-4	0.684	INTRON CG32137
3L	5234164	3L_5234164_SNP [dm3] 3L_5241064_SNP [dm6]	T	A	3.640e^-4	0.684	INTRON shep
2R	14747817	2R_14747817_SNP [dm3] 2R_18860312_SNP [dm6]	C	T	3.642e^-4	0.684	DOWNSTREAM Jheh3 INTERGENIC	TF binding site mE1_TFBS_cad
2L	10087306	2L_10087306_INS [dm3] 2L_10087306_INS [dm6]	C	CACCGTCCC	3.643e^-4	0.684	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2R	6413171	2R_6413171_SNP [dm3] 2R_10525666_SNP [dm6]	C	G	3.666e^-4	0.684	SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola
3R	5881791	3R_5881791_SNP [dm3] 3R_10056069_SNP [dm6]	T	C	3.668e^-4	0.684	NON_SYNONYMOUS_CODING Npc2d

By genomic position
Variant impact
Gene name

idx_Surv_cum_MeHg phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results