DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.537e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2569 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	19164428	2R_19164428_SNP [dm3] 2R_23276905_SNP [dm6]	T	G	1.698e^-7	0.318	INTERGENIC
3R	10766286	3R_10766286_SNP [dm3] 3R_14940564_SNP [dm6]	G	C	5.652e^-7	0.385	INTERGENIC
2R	19164453	2R_19164453_SNP [dm3] 2R_23276930_SNP [dm6]	C	T	7.194e^-7	0.385	INTERGENIC
2R	17299063	2R_17299063_SNP [dm3] 2R_21411558_SNP [dm6]	A	G	8.208e^-7	0.385	INTRON Sdc
2R	17809823	2R_17809823_SNP [dm3] 2R_21922318_SNP [dm6]	C	T	2.389e^-6	0.658	INTRON Fili
2L	9463006	2L_9463006_SNP [dm3] 2L_9463006_SNP [dm6]	T	G	2.669e^-6	0.658	UTR_3_PRIME numb
3L	23033953	3L_23033953_SNP [dm3] 3L_23040853_SNP [dm6]	T	A	2.947e^-6	0.658	DOWNSTREAM nrm INTERGENIC
3R	23990088	3R_23990088_DEL [dm3] 3R_28164366_DEL [dm6]	CGCC	C	3.175e^-6	0.658	INTRON CG34354
3L	7454914	3L_7454914_SNP [dm3] 3L_7461814_SNP [dm6]	G	A	3.494e^-6	0.658	INTERGENIC
3L	15284967	3L_15284967_SNP [dm3] 3L_15291867_SNP [dm6]	G	C	3.627e^-6	0.658	INTERGENIC
2L	9463981	2L_9463981_SNP [dm3] 2L_9463981_SNP [dm6]	A	G	4.222e^-6	0.658	UTR_3_PRIME numb DOWNSTREAM numb
3L	730003	3L_730003_SNP [dm3] 3L_730003_SNP [dm6]	C	G	4.566e^-6	0.658	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16098791	2R_16098791_SNP [dm3] 2R_20211286_SNP [dm6]	A	C	6.032e^-6	0.658	DOWNSTREAM CG16894 INTERGENIC
2R	9929328	2R_9929328_SNP [dm3] 2R_14041823_SNP [dm6]	A	T	6.154e^-6	0.658	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10171323	2R_10171323_SNP [dm3] 2R_14283818_SNP [dm6]	A	G	6.240e^-6	0.658	INTRON Ih
X	3293411	X_3293411_SNP [dm3] X_3399378_SNP [dm6]	G	C	6.289e^-6	0.658	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10171279	2R_10171279_SNP [dm3] 2R_14283774_SNP [dm6]	C	T	6.299e^-6	0.658	INTRON Ih
X	8618518	X_8618518_SNP [dm3] X_8724485_SNP [dm6]	A	T	6.346e^-6	0.658	UPSTREAM CR43297 INTERGENIC
X	8618588	X_8618588_SNP [dm3] X_8724555_SNP [dm6]	T	C	6.711e^-6	0.658	UPSTREAM CR43297 INTERGENIC
2R	16290821	2R_16290821_SNP [dm3] 2R_20403316_SNP [dm6]	C	T	7.957e^-6	0.658	INTERGENIC
X	8618591	X_8618591_SNP [dm3] X_8724558_SNP [dm6]	G	A	9.145e^-6	0.658	UPSTREAM CR43297 INTERGENIC
2R	12008938	2R_12008938_SNP [dm3] 2R_16121433_SNP [dm6]	G	A	9.362e^-6	0.658	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
3L	15608171	3L_15608171_SNP [dm3] 3L_15615071_SNP [dm6]	G	A	9.906e^-6	0.658	INTRON comm3
X	16153547	X_16153547_SNP [dm3] X_16259514_SNP [dm6]	G	A	1.055e^-5	0.658	INTERGENIC
2L	9463504	2L_9463504_SNP [dm3] 2L_9463504_SNP [dm6]	A	C	1.065e^-5	0.658	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	2392244	3L_2392244_SNP [dm3] 3L_2392244_SNP [dm6]	A	C	1.075e^-5	0.658	INTRON CG45186
3L	8875006	3L_8875006_DEL [dm3] 3L_8881906_DEL [dm6]	CC	C	1.087e^-5	0.658	INTRON dally
3R	15833329	3R_15833329_SNP [dm3] 3R_20007607_SNP [dm6]	T	C	1.115e^-5	0.658	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16099782	2R_16099782_SNP [dm3] 2R_20212277_SNP [dm6]	T	A	1.128e^-5	0.658	NON_SYNONYMOUS_CODING CG16894
2L	18478945	2L_18478945_SNP [dm3] 2L_18478945_SNP [dm6]	C	T	1.128e^-5	0.658	INTRON CG10283
3L	15883966	3L_15883966_SNP [dm3] 3L_15890866_SNP [dm6]	A	G	1.189e^-5	0.658	INTRON pHCl
3R	3098275	3R_3098275_SNP [dm3] 3R_7272553_SNP [dm6]	C	A	1.264e^-5	0.658	DOWNSTREAM rn & 1 other INTERGENIC
X	3293395	X_3293395_SNP [dm3] X_3399362_SNP [dm6]	A	C	1.471e^-5	0.658	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3293399	X_3293399_MNP [dm3] X_3399366_MNP [dm6]	TAA	CTT	1.471e^-5	0.658	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3293404	X_3293404_SNP [dm3] X_3399371_SNP [dm6]	A	G	1.471e^-5	0.658	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3293428	X_3293428_SNP [dm3] X_3399395_SNP [dm6]	A	T	1.486e^-5	0.658	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8351860	2L_8351860_SNP [dm3] 2L_8351860_SNP [dm6]	G	A	1.517e^-5	0.658	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2L	12280030	2L_12280030_SNP [dm3] 2L_12280030_SNP [dm6]	C	A	1.527e^-5	0.658	INTRON aret
X	11519769	X_11519769_SNP [dm3] X_11625736_SNP [dm6]	A	G	1.541e^-5	0.658	INTRON Ptp10D
2L	8700458	2L_8700458_SNP [dm3] 2L_8700458_SNP [dm6]	G	A	1.543e^-5	0.658	UPSTREAM Hnf4 INTRON Hnf4
3L	11587955	3L_11587955_SNP [dm3] 3L_11594855_SNP [dm6]	G	A	1.553e^-5	0.658	INTERGENIC
2R	10171349	2R_10171349_SNP [dm3] 2R_14283844_SNP [dm6]	G	C	1.580e^-5	0.658	INTRON Ih	TF binding site mE1_TFBS_cad
3L	15608156	3L_15608156_SNP [dm3] 3L_15615056_SNP [dm6]	T	C	1.594e^-5	0.658	INTRON comm3
X	8618759	X_8618759_SNP [dm3] X_8724726_SNP [dm6]	A	G	1.653e^-5	0.658	EXON CR43297
3L	11588003	3L_11588003_SNP [dm3] 3L_11594903_SNP [dm6]	T	A	1.679e^-5	0.658	INTERGENIC
3L	21288769	3L_21288769_SNP [dm3] 3L_21295669_SNP [dm6]	T	C	1.768e^-5	0.658	SYNONYMOUS_CODING Cpr78Cb
X	11519841	X_11519841_SNP [dm3] X_11625808_SNP [dm6]	A	T	1.809e^-5	0.658	INTRON Ptp10D
2L	17225478	2L_17225478_SNP [dm3] 2L_17225478_SNP [dm6]	A	G	1.831e^-5	0.658	INTRON beat-IIIc
2R	17427710	2R_17427710_SNP [dm3] 2R_21540205_SNP [dm6]	G	A	1.885e^-5	0.658	UPSTREAM CG33226 INTRON Egfr & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	11519937	X_11519937_SNP [dm3] X_11625904_SNP [dm6]	C	T	1.898e^-5	0.658	INTRON Ptp10D
3L	3824237	3L_3824237_SNP [dm3] 3L_3824237_SNP [dm6]	T	A	1.974e^-5	0.658	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16101472	2R_16101472_SNP [dm3] 2R_20213967_SNP [dm6]	A	G	1.978e^-5	0.658	INTERGENIC
3L	21995881	3L_21995881_SNP [dm3] 3L_22002781_SNP [dm6]	G	A	1.997e^-5	0.658	INTERGENIC
3L	19017086	3L_19017086_SNP [dm3] 3L_19023986_SNP [dm6]	C	T	2.048e^-5	0.658	INTRON nkd	TF binding site mE1_TFBS_sbb
2R	18579313	2R_18579313_SNP [dm3] 2R_22691808_SNP [dm6]	G	A	2.053e^-5	0.658	DOWNSTREAM robo EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11519750	X_11519750_SNP [dm3] X_11625717_SNP [dm6]	C	G	2.079e^-5	0.658	INTRON Ptp10D
3L	21292727	3L_21292727_SNP [dm3] 3L_21299627_SNP [dm6]	C	G	2.082e^-5	0.658	UPSTREAM Cpr78Cc DOWNSTREAM CG43702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3L	15284947	3L_15284947_SNP [dm3] 3L_15291847_SNP [dm6]	C	A	2.090e^-5	0.658	INTERGENIC
2L	18478949	2L_18478949_SNP [dm3] 2L_18478949_SNP [dm6]	T	A	2.301e^-5	0.658	INTRON CG10283
3L	12507342	3L_12507342_SNP [dm3] 3L_12514242_SNP [dm6]	G	T	2.320e^-5	0.658	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	9463848	2L_9463848_SNP [dm3] 2L_9463848_SNP [dm6]	T	A	2.433e^-5	0.658	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	15242745	3R_15242745_SNP [dm3] 3R_19417023_SNP [dm6]	A	C	2.476e^-5	0.658	INTRON CG31221
3R	15242808	3R_15242808_SNP [dm3] 3R_19417086_SNP [dm6]	T	C	2.518e^-5	0.658	INTRON CG31221
2L	16592080	2L_16592080_SNP [dm3] 2L_16592080_SNP [dm6]	A	G	2.524e^-5	0.658	INTRON CG42389	TF binding site mE1_TFBS_cad
2R	20910216	2R_20910216_DEL [dm3] 2R_25022693_DEL [dm6]	TCCGCAATTCATACGGAGTA...	T	2.586e^-5	0.658	INTRON uzip	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	996409	3L_996409_SNP [dm3] 3L_996409_SNP [dm6]	T	C	2.611e^-5	0.658	UTR_3_PRIME trio DOWNSTREAM CG12038 & 1 other
2R	21060294	2R_21060294_SNP [dm3] 2R_25172771_SNP [dm6]	A	T	2.621e^-5	0.658	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC
2R	17315103	2R_17315103_SNP [dm3] 2R_21427598_SNP [dm6]	G	C	2.698e^-5	0.658	INTRON Sdc
3R	5804235	3R_5804235_SNP [dm3] 3R_9978513_SNP [dm6]	C	T	2.722e^-5	0.658	INTRON Glut4EF
3L	1250879	3L_1250879_SNP [dm3] 3L_1250879_SNP [dm6]	G	A	2.766e^-5	0.658	START_LOST CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2R	10482470	2R_10482470_SNP [dm3] 2R_14594965_SNP [dm6]	C	T	2.834e^-5	0.658	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
X	17243819	X_17243819_SNP [dm3] X_17349786_SNP [dm6]	A	T	2.887e^-5	0.658	INTERGENIC
3R	11187358	3R_11187358_SNP [dm3] 3R_15361636_SNP [dm6]	T	A	2.892e^-5	0.658	UTR_5_PRIME ldlCp UPSTREAM Trax	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9464032	2L_9464032_SNP [dm3] 2L_9464032_SNP [dm6]	G	A	2.906e^-5	0.658	UTR_3_PRIME numb DOWNSTREAM numb
2L	15359234	2L_15359234_SNP [dm3] 2L_15359234_SNP [dm6]	C	G	2.952e^-5	0.658	INTERGENIC
3R	15240481	3R_15240481_SNP [dm3] 3R_19414759_SNP [dm6]	T	C	2.960e^-5	0.658	INTRON CG31221
X	11519899	X_11519899_DEL [dm3] X_11625866_DEL [dm6]	GG	G	2.984e^-5	0.658	INTRON Ptp10D
3L	11587976	3L_11587976_SNP [dm3] 3L_11594876_SNP [dm6]	C	G	2.984e^-5	0.658	INTERGENIC
3L	8462387	3L_8462387_SNP [dm3] 3L_8469287_SNP [dm6]	T	C	2.986e^-5	0.658	INTRON Gug	TF binding site BDTNP1_TFBS_twi
2R	17974312	2R_17974312_SNP [dm3] 2R_22086807_SNP [dm6]	G	A	3.034e^-5	0.658	SYNONYMOUS_CODING CG13502 INTRON CG13502
2R	15035166	2R_15035166_SNP [dm3] 2R_19147661_SNP [dm6]	T	G	3.112e^-5	0.658	INTRON ena	TF binding site mE1_TFBS_HSA
3L	1250838	3L_1250838_SNP [dm3] 3L_1250838_SNP [dm6]	A	G	3.187e^-5	0.658	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	3.193e^-5	0.658	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
2R	19940705	2R_19940705_SNP [dm3] 2R_24053182_SNP [dm6]	T	C	3.222e^-5	0.658	DOWNSTREAM sei INTRON ppk29
2R	3576103	2R_3576103_SNP [dm3] 2R_7688598_SNP [dm6]	G	T	3.273e^-5	0.658	INTRON CG1399
X	11519775	X_11519775_INS [dm3] X_11625742_INS [dm6]	C	CATAC	3.369e^-5	0.658	INTRON Ptp10D
3L	9424141	3L_9424141_SNP [dm3] 3L_9431041_SNP [dm6]	A	G	3.401e^-5	0.658	NON_SYNONYMOUS_CODING MTF-1 START_GAINED MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8618739	X_8618739_SNP [dm3] X_8724706_SNP [dm6]	A	G	3.487e^-5	0.658	EXON CR43297
2R	20905916	2R_20905916_DEL [dm3] 2R_25018393_DEL [dm6]	AGTGGCCTGGCCATTAATTA...	A	3.496e^-5	0.658	INTRON uzip	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11187373	3R_11187373_SNP [dm3] 3R_15361651_SNP [dm6]	C	A	3.550e^-5	0.658	UTR_5_PRIME ldlCp UPSTREAM Trax	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13838051	2R_13838051_SNP [dm3] 2R_17950546_SNP [dm6]	T	A	3.566e^-5	0.658	INTERGENIC
3L	2285397	3L_2285397_SNP [dm3] 3L_2285397_SNP [dm6]	G	C	3.598e^-5	0.658	INTRON MsR2
3R	15240427	3R_15240427_SNP [dm3] 3R_19414705_SNP [dm6]	C	G	3.629e^-5	0.658	INTRON CG31221
X	11519749	X_11519749_SNP [dm3] X_11625716_SNP [dm6]	T	C	3.672e^-5	0.658	INTRON Ptp10D
3R	14686520	3R_14686520_SNP [dm3] 3R_18860798_SNP [dm6]	C	G	3.713e^-5	0.658	INTERGENIC
3L	11588042	3L_11588042_SNP [dm3] 3L_11594942_SNP [dm6]	G	A	3.734e^-5	0.658	INTERGENIC
3L	2285238	3L_2285238_SNP [dm3] 3L_2285238_SNP [dm6]	G	T	3.752e^-5	0.658	INTRON MsR2
3L	8874976	3L_8874976_MNP [dm3] 3L_8881876_MNP [dm6]	CAT	TGA	3.775e^-5	0.658	INTRON dally
3L	8875004	3L_8875004_SNP [dm3] 3L_8881904_SNP [dm6]	T	C	3.775e^-5	0.658	INTRON dally
3L	13869735	3L_13869735_SNP [dm3] 3L_13876635_SNP [dm6]	A	G	3.835e^-5	0.658	INTRON dysc
2R	19544932	2R_19544932_SNP [dm3] 2R_23657409_SNP [dm6]	C	T	3.871e^-5	0.658	UPSTREAM Pde8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13946850	2R_13946850_SNP [dm3] 2R_18059345_SNP [dm6]	A	G	3.892e^-5	0.658	UPSTREAM CR45314 INTERGENIC
X	12990471	X_12990471_SNP [dm3] X_13096438_SNP [dm6]	A	T	3.981e^-5	0.658	UTR_3_PRIME CG43313 DOWNSTREAM CG2200	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3293403	X_3293403_SNP [dm3] X_3399370_SNP [dm6]	T	C	3.997e^-5	0.658	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9909045	3L_9909045_SNP [dm3] 3L_9915945_SNP [dm6]	T	G	3.998e^-5	0.658	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20849280	2L_20849280_SNP [dm3] 2L_20849280_SNP [dm6]	A	G	4.003e^-5	0.658	UPSTREAM CG14402 DOWNSTREAM CG31676 INTERGENIC
3L	9424149	3L_9424149_SNP [dm3] 3L_9431049_SNP [dm6]	G	A	4.019e^-5	0.658	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	995138	3L_995138_SNP [dm3] 3L_995138_SNP [dm6]	C	T	4.069e^-5	0.658	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	14072021	2R_14072021_SNP [dm3] 2R_18184516_SNP [dm6]	C	T	4.121e^-5	0.658	UTR_3_PRIME CG33958 UPSTREAM CG5721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14779682	2R_14779682_SNP [dm3] 2R_18892177_SNP [dm6]	T	G	4.182e^-5	0.658	INTRON sano
2L	9445625	2L_9445625_SNP [dm3] 2L_9445625_SNP [dm6]	C	T	4.268e^-5	0.658	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	17225327	2L_17225327_SNP [dm3] 2L_17225327_SNP [dm6]	A	G	4.287e^-5	0.658	INTRON beat-IIIc
3L	7454751	3L_7454751_SNP [dm3] 3L_7461651_SNP [dm6]	T	C	4.292e^-5	0.658	INTERGENIC
X	7801040	X_7801040_SNP [dm3] X_7907007_SNP [dm6]	T	A	4.331e^-5	0.658	INTRON dpr14
2L	8371847	2L_8371847_SNP [dm3] 2L_8371847_SNP [dm6]	T	A	4.335e^-5	0.658	UPSTREAM CG17292 INTRON CG17292
3L	7221362	3L_7221362_SNP [dm3] 3L_7228262_SNP [dm6]	A	G	4.347e^-5	0.658	INTERGENIC
2L	9464758	2L_9464758_SNP [dm3] 2L_9464758_SNP [dm6]	T	C	4.351e^-5	0.658	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9928127	2R_9928127_SNP [dm3] 2R_14040622_SNP [dm6]	C	G	4.373e^-5	0.658	NON_SYNONYMOUS_CODING mam INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	17238114	3R_17238114_SNP [dm3] 3R_21412392_SNP [dm6]	C	T	4.406e^-5	0.658	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	8875389	3L_8875389_SNP [dm3] 3L_8882289_SNP [dm6]	C	T	4.475e^-5	0.658	INTRON dally
X	7801306	X_7801306_SNP [dm3] X_7907273_SNP [dm6]	A	G	4.532e^-5	0.658	SYNONYMOUS_CODING dpr14
3L	11588041	3L_11588041_SNP [dm3] 3L_11594941_SNP [dm6]	A	G	4.658e^-5	0.658	INTERGENIC
3L	8462404	3L_8462404_SNP [dm3] 3L_8469304_SNP [dm6]	C	A	4.690e^-5	0.658	INTRON Gug	TF binding site BDTNP1_TFBS_twi
3R	7699207	3R_7699207_SNP [dm3] 3R_11873485_SNP [dm6]	G	A	4.696e^-5	0.658	INTERGENIC
3R	22414831	3R_22414831_SNP [dm3] 3R_26589109_SNP [dm6]	T	C	4.768e^-5	0.658	DOWNSTREAM scrib INTRON scrib
3L	995141	3L_995141_SNP [dm3] 3L_995141_SNP [dm6]	C	G	4.776e^-5	0.658	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
X	7799619	X_7799619_SNP [dm3] X_7905586_SNP [dm6]	T	C	4.798e^-5	0.658	UTR_3_PRIME dpr14 DOWNSTREAM dpr14
3R	11187366	3R_11187366_SNP [dm3] 3R_15361644_SNP [dm6]	G	C	4.838e^-5	0.658	UTR_5_PRIME ldlCp UPSTREAM Trax	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18478942	2L_18478942_SNP [dm3] 2L_18478942_SNP [dm6]	T	A	4.841e^-5	0.658	INTRON CG10283
3R	21411766	3R_21411766_SNP [dm3] 3R_25586044_SNP [dm6]	G	C	4.853e^-5	0.658	INTRON msi
2R	3836762	2R_3836762_SNP [dm3] 2R_7949257_SNP [dm6]	T	A	4.868e^-5	0.658	UPSTREAM CG11165 INTRON CG14764	TF binding site BDTNP1_TFBS_da
2L	7263278	2L_7263278_SNP [dm3] 2L_7263278_SNP [dm6]	A	T	4.875e^-5	0.658	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8699375	3L_8699375_SNP [dm3] 3L_8706275_SNP [dm6]	C	T	4.906e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7344187	3L_7344187_SNP [dm3] 3L_7351087_SNP [dm6]	C	A	4.906e^-5	0.658	INTRON qm
3R	27894396	3R_27894396_SNP [dm3] 3R_32068674_SNP [dm6]	C	A	4.914e^-5	0.658	UPSTREAM Map205	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	11299383	2L_11299383_SNP [dm3] 2L_11299383_SNP [dm6]	C	T	4.936e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	995303	3L_995303_SNP [dm3] 3L_995303_SNP [dm6]	C	T	4.946e^-5	0.658	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3R	14686568	3R_14686568_SNP [dm3] 3R_18860846_SNP [dm6]	A	C	4.992e^-5	0.658	INTERGENIC
2R	19786008	2R_19786008_SNP [dm3] 2R_23898485_SNP [dm6]	T	A	5.101e^-5	0.658	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17395560	2L_17395560_SNP [dm3] 2L_17395560_SNP [dm6]	T	C	5.105e^-5	0.658	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
2L	21014919	2L_21014919_SNP [dm3] 2L_21014919_SNP [dm6]	G	A	5.118e^-5	0.658	INTRON CG42238
X	11519745	X_11519745_SNP [dm3] X_11625712_SNP [dm6]	G	T	5.175e^-5	0.658	INTRON Ptp10D
3L	9424248	3L_9424248_SNP [dm3] 3L_9431148_SNP [dm6]	A	G	5.195e^-5	0.658	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11489404	2L_11489404_SNP [dm3] 2L_11489404_SNP [dm6]	A	G	5.198e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14686511	3R_14686511_SNP [dm3] 3R_18860789_SNP [dm6]	G	C	5.211e^-5	0.658	INTERGENIC
X	17244025	X_17244025_SNP [dm3] X_17349992_SNP [dm6]	A	T	5.291e^-5	0.658	INTERGENIC
2L	9392483	2L_9392483_SNP [dm3] 2L_9392483_SNP [dm6]	G	T	5.299e^-5	0.658	DOWNSTREAM Aldh INTRON Shawl
3L	21291410	3L_21291410_SNP [dm3] 3L_21298310_SNP [dm6]	G	A	5.316e^-5	0.658	UPSTREAM CG43702 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14686540	3R_14686540_SNP [dm3] 3R_18860818_SNP [dm6]	C	T	5.325e^-5	0.658	INTERGENIC
3L	2360785	3L_2360785_SNP [dm3] 3L_2360785_SNP [dm6]	G	A	5.363e^-5	0.658	NON_SYNONYMOUS_CODING CG13801
3R	15833221	3R_15833221_SNP [dm3] 3R_20007499_SNP [dm6]	G	T	5.455e^-5	0.658	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	8618551	X_8618551_SNP [dm3] X_8724518_SNP [dm6]	A	T	5.489e^-5	0.658	UPSTREAM CR43297 INTERGENIC
2R	9892970	2R_9892970_SNP [dm3] 2R_14005465_SNP [dm6]	A	G	5.502e^-5	0.658	DOWNSTREAM mir-4978 INTRON mam
2R	12008941	2R_12008941_SNP [dm3] 2R_16121436_SNP [dm6]	A	T	5.516e^-5	0.658	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
X	6208047	X_6208047_SNP [dm3] X_6314014_SNP [dm6]	T	C	5.520e^-5	0.658	INTRON CG15894
3L	2471145	3L_2471145_SNP [dm3] 3L_2471145_SNP [dm6]	A	T	5.567e^-5	0.658	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	8704257	2L_8704257_INS [dm3] 2L_8704257_INS [dm6]	TTAAA	GCGTTT	5.614e^-5	0.658	INTRON Hnf4 EXON CR44992
2L	10451653	2L_10451653_SNP [dm3] 2L_10451653_SNP [dm6]	C	T	5.717e^-5	0.658	SYNONYMOUS_CODING ppk10
3L	8875085	3L_8875085_INS [dm3] 3L_8881985_INS [dm6]	A	AG	5.732e^-5	0.658	INTRON dally
3L	8875101	3L_8875101_SNP [dm3] 3L_8882001_SNP [dm6]	C	T	5.732e^-5	0.658	INTRON dally
3L	8875102	3L_8875102_INS [dm3] 3L_8882002_INS [dm6]	G	GT	5.732e^-5	0.658	INTRON dally
2L	11372455	2L_11372455_SNP [dm3] 2L_11372455_SNP [dm6]	T	C	5.746e^-5	0.658	INTRON salr	TF binding site mE1_TFBS_chinmo
2R	5213857	2R_5213857_SNP [dm3] 2R_9326352_SNP [dm6]	C	T	5.780e^-5	0.658	INTRON CG13954 & 1 other
2R	16661523	2R_16661523_SNP [dm3] 2R_20774018_SNP [dm6]	C	T	5.827e^-5	0.658	SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_chinmo
2L	8700469	2L_8700469_SNP [dm3] 2L_8700469_SNP [dm6]	A	G	5.898e^-5	0.658	UPSTREAM Hnf4 INTRON Hnf4
3L	12460092	3L_12460092_SNP [dm3] 3L_12466992_SNP [dm6]	T	C	5.901e^-5	0.658	INTRON eyg	TF binding site BDTNP1_TFBS_z
3R	25930445	3R_25930445_SNP [dm3] 3R_30104723_SNP [dm6]	C	A	5.932e^-5	0.658	NON_SYNONYMOUS_CODING sima UTR_5_PRIME sima INTRON sima
3L	2471233	3L_2471233_SNP [dm3] 3L_2471233_SNP [dm6]	A	G	5.943e^-5	0.658	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	2470935	3L_2470935_SNP [dm3] 3L_2470935_SNP [dm6]	G	T	5.977e^-5	0.658	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	19602843	2R_19602843_SNP [dm3] 2R_23715320_SNP [dm6]	G	T	6.013e^-5	0.658	INTRON Sesn
3L	8875199	3L_8875199_SNP [dm3] 3L_8882099_SNP [dm6]	A	T	6.057e^-5	0.658	INTRON dally
3L	21995668	3L_21995668_SNP [dm3] 3L_22002568_SNP [dm6]	G	A	6.080e^-5	0.658	INTERGENIC
3R	23192304	3R_23192304_SNP [dm3] 3R_27366582_SNP [dm6]	G	A	6.099e^-5	0.658	DOWNSTREAM CR43476 INTRON CG42534
3L	2285235	3L_2285235_SNP [dm3] 3L_2285235_SNP [dm6]	A	G	6.151e^-5	0.658	INTRON MsR2
3L	2285263	3L_2285263_SNP [dm3] 3L_2285263_SNP [dm6]	C	G	6.151e^-5	0.658	INTRON MsR2
3L	2465503	3L_2465503_SNP [dm3] 3L_2465503_SNP [dm6]	A	T	6.172e^-5	0.658	SYNONYMOUS_CODING CG45186 DOWNSTREAM CG45186
2R	16660417	2R_16660417_SNP [dm3] 2R_20772912_SNP [dm6]	T	G	6.310e^-5	0.661	UPSTREAM CG13443 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9372978	3L_9372978_SNP [dm3] 3L_9379878_SNP [dm6]	C	A	6.314e^-5	0.661	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	5475926	2R_5475926_SNP [dm3] 2R_9588421_SNP [dm6]	G	A	6.348e^-5	0.661	NON_SYNONYMOUS_CODING clos UPSTREAM CG1827 DOWNSTREAM RpL31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11598617	3R_11598617_SNP [dm3] 3R_15772895_SNP [dm6]	A	T	6.353e^-5	0.661	INTERGENIC
3R	14686512	3R_14686512_SNP [dm3] 3R_18860790_SNP [dm6]	G	T	6.465e^-5	0.661	INTERGENIC
2R	17588139	2R_17588139_SNP [dm3] 2R_21700634_SNP [dm6]	T	G	6.487e^-5	0.661	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8617041	X_8617041_SNP [dm3] X_8723008_SNP [dm6]	C	T	6.515e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9146737	2R_9146737_SNP [dm3] 2R_13259232_SNP [dm6]	C	T	6.548e^-5	0.661	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
2L	11230628	2L_11230628_SNP [dm3] 2L_11230628_SNP [dm6]	C	G	6.550e^-5	0.661	INTRON ab
2R	3840024	2R_3840024_SNP [dm3] 2R_7952519_SNP [dm6]	C	T	6.553e^-5	0.661	INTRON CG14764
2R	3512030	2R_3512030_SNP [dm3] 2R_7624525_SNP [dm6]	A	C	6.594e^-5	0.661	INTRON CG43340
X	8173413	X_8173413_DEL [dm3] X_8279380_DEL [dm6]	GAAATGG	G	6.655e^-5	0.662	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA
2R	16773048	2R_16773048_SNP [dm3] 2R_20885543_SNP [dm6]	A	T	6.794e^-5	0.662	INTRON otp
X	11519834	X_11519834_SNP [dm3] X_11625801_SNP [dm6]	C	G	6.804e^-5	0.662	INTRON Ptp10D
2R	19601518	2R_19601518_SNP [dm3] 2R_23713995_SNP [dm6]	C	T	6.840e^-5	0.662	UTR_5_PRIME Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16773052	2R_16773052_SNP [dm3] 2R_20885547_SNP [dm6]	A	G	6.957e^-5	0.662	INTRON otp
3L	15283278	3L_15283278_SNP [dm3] 3L_15290178_SNP [dm6]	T	A	6.981e^-5	0.662	INTERGENIC
3R	3092002	3R_3092002_DEL [dm3] 3R_7266280_DEL [dm6]	TT	T	6.992e^-5	0.662	UPSTREAM Gld INTRON Syt4	TF binding site BDTNP1_TFBS_twi
3R	22668777	3R_22668777_SNP [dm3] 3R_26843055_SNP [dm6]	A	T	7.036e^-5	0.662	UTR_3_PRIME Lerp DOWNSTREAM Tl
2R	16773007	2R_16773007_SNP [dm3] 2R_20885502_SNP [dm6]	C	A	7.047e^-5	0.662	INTRON otp
2R	12278454	2R_12278454_SNP [dm3] 2R_16390949_SNP [dm6]	G	C	7.090e^-5	0.662	INTRON Sema-2b
X	8617048	X_8617048_SNP [dm3] X_8723015_SNP [dm6]	T	C	7.133e^-5	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9445602	2L_9445602_SNP [dm3] 2L_9445602_SNP [dm6]	A	C	7.209e^-5	0.662	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	5413763	2R_5413763_SNP [dm3] 2R_9526258_SNP [dm6]	A	G	7.317e^-5	0.662	INTRON brp
3L	21987271	3L_21987271_SNP [dm3] 3L_21994171_SNP [dm6]	C	T	7.346e^-5	0.662	INTERGENIC
3L	19017079	3L_19017079_SNP [dm3] 3L_19023979_SNP [dm6]	C	T	7.395e^-5	0.662	INTRON nkd	TF binding site mE1_TFBS_sbb
3R	5815951	3R_5815951_SNP [dm3] 3R_9990229_SNP [dm6]	T	C	7.412e^-5	0.662	UTR_3_PRIME Glut4EF
3R	17263951	3R_17263951_SNP [dm3] 3R_21438229_SNP [dm6]	G	A	7.469e^-5	0.662	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	10617675	2R_10617675_SNP [dm3] 2R_14730170_SNP [dm6]	G	A	7.497e^-5	0.662	INTERGENIC
3L	10751321	3L_10751321_SNP [dm3] 3L_10758221_SNP [dm6]	G	C	7.503e^-5	0.662	INTERGENIC
3L	7454754	3L_7454754_SNP [dm3] 3L_7461654_SNP [dm6]	T	C	7.602e^-5	0.662	INTERGENIC
3L	2285264	3L_2285264_SNP [dm3] 3L_2285264_SNP [dm6]	G	A	7.610e^-5	0.662	INTRON MsR2
2R	12846611	2R_12846611_SNP [dm3] 2R_16959106_SNP [dm6]	C	T	7.684e^-5	0.662	SYNONYMOUS_CODING CG9010 DOWNSTREAM CG6665	TF binding site mE1_TFBS_chinmo
3L	7330950	3L_7330950_SNP [dm3] 3L_7337850_SNP [dm6]	T	C	7.696e^-5	0.662	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2285232	3L_2285232_SNP [dm3] 3L_2285232_SNP [dm6]	T	G	7.707e^-5	0.662	INTRON MsR2
3L	7331186	3L_7331186_SNP [dm3] 3L_7338086_SNP [dm6]	C	T	7.777e^-5	0.662	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	21990214	3L_21990214_SNP [dm3] 3L_21997114_SNP [dm6]	G	A	7.782e^-5	0.662	INTERGENIC
X	14523650	X_14523650_SNP [dm3] X_14629617_SNP [dm6]	T	A	7.891e^-5	0.662	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2371288	3L_2371288_SNP [dm3] 3L_2371288_SNP [dm6]	G	A	7.892e^-5	0.662	SYNONYMOUS_CODING CG1317 UPSTREAM CG8993	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	563687	3L_563687_SNP [dm3] 3L_563687_SNP [dm6]	T	A	7.971e^-5	0.662	INTRON hipk
3R	11598592	3R_11598592_SNP [dm3] 3R_15772870_SNP [dm6]	A	G	7.975e^-5	0.662	INTERGENIC
2L	9392472	2L_9392472_SNP [dm3] 2L_9392472_SNP [dm6]	A	T	8.014e^-5	0.662	DOWNSTREAM Aldh INTRON Shawl
2L	17395681	2L_17395681_SNP [dm3] 2L_17395681_SNP [dm6]	G	T	8.115e^-5	0.662	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
3R	24205454	3R_24205454_SNP [dm3] 3R_28379732_SNP [dm6]	C	T	8.134e^-5	0.662	INTERGENIC
3R	26454197	3R_26454197_SNP [dm3] 3R_30628475_SNP [dm6]	T	C	8.182e^-5	0.662	SYNONYMOUS_CODING CG2267
3L	15284882	3L_15284882_SNP [dm3] 3L_15291782_SNP [dm6]	C	G	8.187e^-5	0.662	INTERGENIC
2R	5219895	2R_5219895_SNP [dm3] 2R_9332390_SNP [dm6]	G	A	8.258e^-5	0.662	INTRON CG13954 & 1 other
X	10818356	X_10818356_SNP [dm3] X_10924323_SNP [dm6]	A	T	8.291e^-5	0.662	DOWNSTREAM CG43901 INTRON v	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2470533	3L_2470533_SNP [dm3] 3L_2470533_SNP [dm6]	T	C	8.356e^-5	0.662	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	9551695	3L_9551695_SNP [dm3] 3L_9558595_SNP [dm6]	T	C	8.368e^-5	0.662	INTRON CG42673
3L	970792	3L_970792_SNP [dm3] 3L_970792_SNP [dm6]	G	A	8.469e^-5	0.662	INTRON Glut1
3L	2285017	3L_2285017_SNP [dm3] 3L_2285017_SNP [dm6]	T	C	8.474e^-5	0.662	INTRON MsR2
3L	9372973	3L_9372973_INS [dm3] 3L_9379873_INS [dm6]	A	AA	8.498e^-5	0.662	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	17923393	X_17923393_SNP [dm3] X_18029360_SNP [dm6]	G	T	8.499e^-5	0.662	INTRON Sh
3R	14686500	3R_14686500_DEL [dm3] 3R_18860778_DEL [dm6]	AA	A	8.503e^-5	0.662	INTERGENIC
X	17241885	X_17241885_SNP [dm3] X_17347852_SNP [dm6]	T	G	8.524e^-5	0.662	INTERGENIC
3R	14686559	3R_14686559_SNP [dm3] 3R_18860837_SNP [dm6]	T	C	8.549e^-5	0.662	INTERGENIC
3R	27019283	3R_27019283_SNP [dm3] 3R_31193561_SNP [dm6]	T	C	8.566e^-5	0.662	SYNONYMOUS_CODING bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17326214	X_17326214_SNP [dm3] X_17432181_SNP [dm6]	T	C	8.572e^-5	0.662	INTRON CG12994
3R	9230798	3R_9230798_SNP [dm3] 3R_13405076_SNP [dm6]	A	G	8.588e^-5	0.662	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11519763	X_11519763_SNP [dm3] X_11625730_SNP [dm6]	A	T	8.597e^-5	0.662	INTRON Ptp10D
2L	10180856	2L_10180856_SNP [dm3] 2L_10180856_SNP [dm6]	C	T	8.628e^-5	0.662	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7799637	X_7799637_SNP [dm3] X_7905604_SNP [dm6]	T	C	8.662e^-5	0.662	UTR_3_PRIME dpr14 DOWNSTREAM dpr14
3L	2285707	3L_2285707_SNP [dm3] 3L_2285707_SNP [dm6]	T	A	8.694e^-5	0.662	INTRON MsR2
3L	13870220	3L_13870220_SNP [dm3] 3L_13877120_SNP [dm6]	C	T	8.766e^-5	0.662	INTRON dysc
2L	21004487	2L_21004487_SNP [dm3] 2L_21004487_SNP [dm6]	C	G	8.776e^-5	0.662	INTRON CG42238	TF binding site mE1_TFBS_inv
2R	8129610	2R_8129610_SNP [dm3] 2R_12242105_SNP [dm6]	T	C	8.781e^-5	0.662	UPSTREAM CG43316 DOWNSTREAM CG43315 INTERGENIC
3L	2470520	3L_2470520_SNP [dm3] 3L_2470520_SNP [dm6]	T	C	8.810e^-5	0.662	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	14686048	X_14686048_SNP [dm3] X_14792015_SNP [dm6]	A	G	8.890e^-5	0.662	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2285260	3L_2285260_SNP [dm3] 3L_2285260_SNP [dm6]	G	A	8.913e^-5	0.662	INTRON MsR2
X	5555357	X_5555357_SNP [dm3] X_5661324_SNP [dm6]	G	A	8.923e^-5	0.662	SYNONYMOUS_CODING CG42265	TF binding site mE1_TFBS_chinmo
2L	18418014	2L_18418014_SNP [dm3] 2L_18418014_SNP [dm6]	G	A	8.946e^-5	0.662	INTERGENIC
3L	18085564	3L_18085564_SNP [dm3] 3L_18092464_SNP [dm6]	C	T	9.039e^-5	0.662	INTRON CG13698
3R	27019256	3R_27019256_SNP [dm3] 3R_31193534_SNP [dm6]	C	A	9.109e^-5	0.662	SYNONYMOUS_CODING bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11489491	2L_11489491_SNP [dm3] 2L_11489491_SNP [dm6]	C	T	9.152e^-5	0.662	INTERGENIC
3R	11598585	3R_11598585_SNP [dm3] 3R_15772863_SNP [dm6]	A	T	9.167e^-5	0.662	INTERGENIC
3L	21293167	3L_21293167_SNP [dm3] 3L_21300067_SNP [dm6]	T	A	9.209e^-5	0.662	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1838839	2R_1838839_DEL [dm3] 2R_5951334_DEL [dm6]	CTTCC	C	9.248e^-5	0.662	INTERGENIC
3R	25127538	3R_25127538_DEL [dm3] 3R_29301816_DEL [dm6]	TCTGTTTTCTGAATT...	T	9.270e^-5	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16465142	2L_16465142_SNP [dm3] 2L_16465142_SNP [dm6]	G	A	9.326e^-5	0.662	INTERGENIC	regulatory region REDfly_CRMs
2L	5708990	2L_5708990_SNP [dm3] 2L_5708990_SNP [dm6]	G	T	9.431e^-5	0.662	UPSTREAM CG7236 INTRON CG7236
2L	2249190	2L_2249190_SNP [dm3] 2L_2249190_SNP [dm6]	C	A	9.479e^-5	0.662	INTERGENIC
2R	15035075	2R_15035075_DEL [dm3] 2R_19147570_DEL [dm6]	TATAC	T	9.508e^-5	0.662	INTRON ena
2L	1563731	2L_1563731_SNP [dm3] 2L_1563731_SNP [dm6]	T	C	9.564e^-5	0.662	INTRON haf	TF binding site mE1_TFBS_inv
2R	20305463	2R_20305463_SNP [dm3] 2R_24417940_SNP [dm6]	C	G	9.598e^-5	0.662	INTRON prom	TF binding site mE1_TFBS_chinmo
3L	8875186	3L_8875186_INS [dm3] 3L_8882086_INS [dm6]	A	ATTTCAAATGA...	9.630e^-5	0.662	INTRON dally
3R	6764112	3R_6764112_SNP [dm3] 3R_10938390_SNP [dm6]	G	A	9.720e^-5	0.662	INTERGENIC
2R	9147190	2R_9147190_SNP [dm3] 2R_13259685_SNP [dm6]	G	A	9.730e^-5	0.662	UPSTREAM CG42319 INTERGENIC
2L	8397012	2L_8397012_SNP [dm3] 2L_8397012_SNP [dm6]	G	A	9.776e^-5	0.662	SYNONYMOUS_CODING CG13385 UPSTREAM Peritrophin-15a	TF binding site mE1_TFBS_cad
X	12045461	X_12045461_SNP [dm3] X_12151428_SNP [dm6]	A	G	9.793e^-5	0.662	INTRON Ten-a
3L	17138939	3L_17138939_INS [dm3] 3L_17145839_INS [dm6]	G	GG	9.804e^-5	0.662	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4008186	2R_4008186_SNP [dm3] 2R_8120681_SNP [dm6]	C	T	9.971e^-5	0.662	INTRON Asap
2L	17395319	2L_17395319_SNP [dm3] 2L_17395319_SNP [dm6]	G	A	1.001e^-4	0.662	INTRON CLIP-190
3L	13870127	3L_13870127_SNP [dm3] 3L_13877027_SNP [dm6]	G	A	1.006e^-4	0.662	INTRON dysc
X	8619807	X_8619807_SNP [dm3] X_8725774_SNP [dm6]	C	T	1.006e^-4	0.662	EXON CR43297
3L	8140589	3L_8140589_SNP [dm3] 3L_8147489_SNP [dm6]	G	A	1.007e^-4	0.662	INTRON CG13676
2L	7593182	2L_7593182_SNP [dm3] 2L_7593182_SNP [dm6]	C	A	1.010e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1266701	3L_1266701_SNP [dm3] 3L_1266701_SNP [dm6]	G	A	1.012e^-4	0.662	INTRON CG9134
3R	21241409	3R_21241409_SNP [dm3] 3R_25415687_SNP [dm6]	A	G	1.012e^-4	0.662	INTRON Fur1
3L	2285449	3L_2285449_SNP [dm3] 3L_2285449_SNP [dm6]	C	T	1.020e^-4	0.662	INTRON MsR2
3L	21288867	3L_21288867_SNP [dm3] 3L_21295767_SNP [dm6]	G	A	1.021e^-4	0.662	NON_SYNONYMOUS_CODING Cpr78Cb DOWNSTREAM Edg78E
3R	15242658	3R_15242658_SNP [dm3] 3R_19416936_SNP [dm6]	G	C	1.022e^-4	0.662	INTRON CG31221
2R	10199881	2R_10199881_SNP [dm3] 2R_14312376_SNP [dm6]	T	G	1.023e^-4	0.662	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9421797	3L_9421797_DEL [dm3] 3L_9428697_DEL [dm6]	TA	C	1.023e^-4	0.662	DOWNSTREAM RpS17 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	1.032e^-4	0.662	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19342037	2L_19342037_SNP [dm3] 2L_19342037_SNP [dm6]	C	G	1.040e^-4	0.662	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3742014	2L_3742014_SNP [dm3] 2L_3742014_SNP [dm6]	G	A	1.041e^-4	0.662	INTRON CG10019
3L	8679317	3L_8679317_SNP [dm3] 3L_8686217_SNP [dm6]	G	A	1.042e^-4	0.662	INTERGENIC
2L	9445624	2L_9445624_SNP [dm3] 2L_9445624_SNP [dm6]	G	T	1.046e^-4	0.662	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	10480476	2R_10480476_SNP [dm3] 2R_14592971_SNP [dm6]	G	A	1.046e^-4	0.662	SYNONYMOUS_CODING CG12869	TF binding site mE1_TFBS_cad
2R	14762345	2R_14762345_SNP [dm3] 2R_18874840_SNP [dm6]	C	A	1.050e^-4	0.662	INTERGENIC
2L	2626129	2L_2626129_SNP [dm3] 2L_2626129_SNP [dm6]	G	A	1.050e^-4	0.662	EXON CR45705
2R	17683495	2R_17683495_SNP [dm3] 2R_21795990_SNP [dm6]	G	A	1.052e^-4	0.662	UPSTREAM CG34204 INTERGENIC
2R	16772950	2R_16772950_SNP [dm3] 2R_20885445_SNP [dm6]	T	C	1.053e^-4	0.662	INTRON otp
3L	19153847	3L_19153847_SNP [dm3] 3L_19160747_SNP [dm6]	A	G	1.054e^-4	0.662	INTRON fz2
2R	3489149	2R_3489149_SNP [dm3] 2R_7601644_SNP [dm6]	C	T	1.061e^-4	0.662	INTRON CG1358
2R	9057956	2R_9057956_SNP [dm3] 2R_13170451_SNP [dm6]	C	T	1.065e^-4	0.662	SYNONYMOUS_CODING Spt-I UPSTREAM AGBE EXON CR45142
X	4679367	X_4679367_SNP [dm3] X_4785334_SNP [dm6]	A	G	1.074e^-4	0.662	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo
2L	2625703	2L_2625703_SNP [dm3] 2L_2625703_SNP [dm6]	G	C	1.076e^-4	0.662	EXON CR45705
3L	23020194	3L_23020194_SNP [dm3] 3L_23027094_SNP [dm6]	T	C	1.080e^-4	0.662	INTRON nrm
X	8617775	X_8617775_SNP [dm3] X_8723742_SNP [dm6]	A	G	1.084e^-4	0.662	UPSTREAM CR43297 INTERGENIC
3L	8875458	3L_8875458_SNP [dm3] 3L_8882358_SNP [dm6]	A	T	1.086e^-4	0.662	INTRON dally
3L	18085420	3L_18085420_SNP [dm3] 3L_18092320_SNP [dm6]	G	A	1.088e^-4	0.662	INTRON CG13698
3R	14686592	3R_14686592_SNP [dm3] 3R_18860870_SNP [dm6]	C	T	1.089e^-4	0.662	INTERGENIC
2R	17102795	2R_17102795_SNP [dm3] 2R_21215290_SNP [dm6]	C	G	1.095e^-4	0.662	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
3R	11598605	3R_11598605_SNP [dm3] 3R_15772883_SNP [dm6]	T	A	1.097e^-4	0.662	INTERGENIC
X	6806201	X_6806201_SNP [dm3] X_6912168_SNP [dm6]	C	T	1.097e^-4	0.662	INTRON CG14431
3R	11996573	3R_11996573_SNP [dm3] 3R_16170851_SNP [dm6]	A	G	1.099e^-4	0.662	UTR_3_PRIME CG6006 DOWNSTREAM CG6006
3L	995664	3L_995664_INS [dm3] 3L_995664_INS [dm6]	T	TTTAATTA	1.100e^-4	0.662	UTR_3_PRIME CG12038 DOWNSTREAM trio
2L	12285953	2L_12285953_SNP [dm3] 2L_12285953_SNP [dm6]	G	T	1.104e^-4	0.662	INTRON aret
2R	17173599	2R_17173599_SNP [dm3] 2R_21286094_SNP [dm6]	G	A	1.109e^-4	0.662	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2R	10174793	2R_10174793_SNP [dm3] 2R_14287288_SNP [dm6]	C	A	1.113e^-4	0.662	NON_SYNONYMOUS_CODING Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	11423537	3R_11423537_SNP [dm3] 3R_15597815_SNP [dm6]	A	T	1.115e^-4	0.662	INTERGENIC
2R	17315111	2R_17315111_SNP [dm3] 2R_21427606_SNP [dm6]	C	T	1.117e^-4	0.662	INTRON Sdc
2L	9396746	2L_9396746_INS [dm3] 2L_9396746_INS [dm6]	C	CC	1.118e^-4	0.662	DOWNSTREAM CG4438 INTRON Shawl
2R	17173605	2R_17173605_SNP [dm3] 2R_21286100_SNP [dm6]	G	A	1.123e^-4	0.662	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2R	17102870	2R_17102870_SNP [dm3] 2R_21215365_SNP [dm6]	T	C	1.125e^-4	0.662	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
2R	13688070	2R_13688070_INS [dm3] 2R_17800565_INS [dm6]	A	AA	1.131e^-4	0.662	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17007592	3R_17007592_SNP [dm3] 3R_21181870_SNP [dm6]	T	A	1.132e^-4	0.662	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
2L	13093846	2L_13093846_SNP [dm3] 2L_13093846_SNP [dm6]	G	A	1.133e^-4	0.662	INTERGENIC
2R	13559548	2R_13559548_SNP [dm3] 2R_17672043_SNP [dm6]	G	A	1.139e^-4	0.662	SYNONYMOUS_CODING P32 DOWNSTREAM CR44404 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10818791	3L_10818791_SNP [dm3] 3L_10825691_SNP [dm6]	A	T	1.153e^-4	0.662	DOWNSTREAM CR45246 INTERGENIC
3L	14944925	3L_14944925_SNP [dm3] 3L_14951825_SNP [dm6]	G	A	1.156e^-4	0.662	INTERGENIC	transposable element FlyBase
2L	9973180	2L_9973180_INS [dm3] 2L_9973180_INS [dm6]	T	TCGGGGCACTA...	1.160e^-4	0.662	INTERGENIC
3R	11598640	3R_11598640_SNP [dm3] 3R_15772918_SNP [dm6]	A	G	1.161e^-4	0.662	INTERGENIC
X	20742486	X_20742486_SNP [dm3] X_20871459_SNP [dm6]	G	A	1.161e^-4	0.662	INTRON shakB
3L	13400851	3L_13400851_SNP [dm3] 3L_13407751_SNP [dm6]	G	A	1.164e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	8619073	X_8619073_SNP [dm3] X_8725040_SNP [dm6]	G	C	1.170e^-4	0.662	EXON CR43297
2R	10482709	2R_10482709_SNP [dm3] 2R_14595204_SNP [dm6]	G	C	1.171e^-4	0.662	UTR_3_PRIME CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2R	10226883	2R_10226883_SNP [dm3] 2R_14339378_SNP [dm6]	T	A	1.175e^-4	0.662	INTRON Shroom
3R	2637304	3R_2637304_DEL [dm3] 3R_6811582_DEL [dm6]	TTAGAA	T	1.175e^-4	0.662	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	16343280	X_16343280_SNP [dm3] X_16449247_SNP [dm6]	A	C	1.177e^-4	0.662	UTR_5_PRIME Rbp2 UPSTREAM CG34015 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17536490	3R_17536490_SNP [dm3] 3R_21710768_SNP [dm6]	A	G	1.177e^-4	0.662	INTRON CG31176
X	8619913	X_8619913_SNP [dm3] X_8725880_SNP [dm6]	T	A	1.178e^-4	0.662	EXON CR43297
2R	18079140	2R_18079140_SNP [dm3] 2R_22191635_SNP [dm6]	A	G	1.179e^-4	0.662	INTRON Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17610616	2R_17610616_SNP [dm3] 2R_21723111_SNP [dm6]	T	C	1.180e^-4	0.662	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11598630	3R_11598630_SNP [dm3] 3R_15772908_SNP [dm6]	A	T	1.182e^-4	0.662	INTERGENIC
2R	15569309	2R_15569309_SNP [dm3] 2R_19681804_SNP [dm6]	T	C	1.183e^-4	0.662	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
3R	14529680	3R_14529680_SNP [dm3] 3R_18703958_SNP [dm6]	G	C	1.193e^-4	0.662	INTERGENIC
2L	9973184	2L_9973184_SNP [dm3] 2L_9973184_SNP [dm6]	A	T	1.196e^-4	0.662	INTERGENIC
3L	18086876	3L_18086876_SNP [dm3] 3L_18093776_SNP [dm6]	C	T	1.196e^-4	0.662	INTRON CG13698
X	14685801	X_14685801_SNP [dm3] X_14791768_SNP [dm6]	C	T	1.198e^-4	0.662	NON_SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
3L	21990281	3L_21990281_SNP [dm3] 3L_21997181_SNP [dm6]	T	A	1.200e^-4	0.662	INTERGENIC
2R	10226884	2R_10226884_SNP [dm3] 2R_14339379_SNP [dm6]	T	C	1.206e^-4	0.662	INTRON Shroom
X	21283478	X_21283478_SNP [dm3] X_21412451_SNP [dm6]	A	G	1.206e^-4	0.662	INTERGENIC
2R	13752206	2R_13752206_SNP [dm3] 2R_17864701_SNP [dm6]	A	C	1.206e^-4	0.662	NON_SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z
3L	21943921	3L_21943921_SNP [dm3] 3L_21950821_SNP [dm6]	A	G	1.214e^-4	0.662	NON_SYNONYMOUS_CODING CG7448 DOWNSTREAM CG14562 INTRON CG7448	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20758401	2R_20758401_SNP [dm3] 2R_24870878_SNP [dm6]	A	G	1.215e^-4	0.662	SYNONYMOUS_CODING Atf-2 DOWNSTREAM CG16896	TF binding site mE1_TFBS_sens
3R	20237579	3R_20237579_SNP [dm3] 3R_24411857_SNP [dm6]	C	T	1.224e^-4	0.664	INTRON nAChRalpha1
3R	23360847	3R_23360847_SNP [dm3] 3R_27535125_SNP [dm6]	G	T	1.227e^-4	0.664	DOWNSTREAM CR44289 INTERGENIC
3L	11416329	3L_11416329_SNP [dm3] 3L_11423229_SNP [dm6]	A	T	1.230e^-4	0.664	INTERGENIC
2R	19582934	2R_19582934_SNP [dm3] 2R_23695411_SNP [dm6]	A	C	1.234e^-4	0.664	NON_SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5469023	X_5469023_SNP [dm3] X_5574990_SNP [dm6]	A	T	1.238e^-4	0.664	INTERGENIC
2L	882092	2L_882092_SNP [dm3] 2L_882092_SNP [dm6]	T	C	1.243e^-4	0.664	NON_SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2R	16173290	2R_16173290_SNP [dm3] 2R_20285785_SNP [dm6]	T	C	1.246e^-4	0.664	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3159596	3R_3159596_SNP [dm3] 3R_7333874_SNP [dm6]	T	C	1.247e^-4	0.664	INTERGENIC
2R	18680228	2R_18680228_SNP [dm3] 2R_22792723_SNP [dm6]	A	T	1.253e^-4	0.664	INTRON CG42260
2R	18680229	2R_18680229_SNP [dm3] 2R_22792724_SNP [dm6]	G	A	1.253e^-4	0.664	INTRON CG42260
X	18332453	X_18332453_SNP [dm3] X_18438420_SNP [dm6]	T	C	1.265e^-4	0.667	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
2R	19582937	2R_19582937_SNP [dm3] 2R_23695414_SNP [dm6]	T	C	1.268e^-4	0.667	NON_SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11230732	2L_11230732_SNP [dm3] 2L_11230732_SNP [dm6]	C	T	1.274e^-4	0.667	INTRON ab
2R	10171225	2R_10171225_SNP [dm3] 2R_14283720_SNP [dm6]	A	T	1.275e^-4	0.667	INTRON Ih
2L	2626247	2L_2626247_SNP [dm3] 2L_2626247_SNP [dm6]	T	A	1.280e^-4	0.667	EXON CR45705
2L	11489408	2L_11489408_SNP [dm3] 2L_11489408_SNP [dm6]	C	A	1.282e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15125986	2R_15125986_SNP [dm3] 2R_19238481_SNP [dm6]	A	T	1.283e^-4	0.667	INTRON cora
2R	17593594	2R_17593594_SNP [dm3] 2R_21706089_SNP [dm6]	G	A	1.293e^-4	0.669	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	18108340	X_18108340_SNP [dm3] X_18214307_SNP [dm6]	C	A	1.295e^-4	0.669	INTRON CG33639
X	11627399	X_11627399_SNP [dm3] X_11733366_SNP [dm6]	T	A	1.300e^-4	0.67	UPSTREAM inaF-B INTRON CG15221 & 1 other
2R	19155874	2R_19155874_SNP [dm3] 2R_23268351_SNP [dm6]	C	G	1.314e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14952262	3L_14952262_SNP [dm3] 3L_14959162_SNP [dm6]	A	C	1.317e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	15569340	2R_15569340_SNP [dm3] 2R_19681835_SNP [dm6]	A	C	1.324e^-4	0.676	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
3R	6897437	3R_6897437_SNP [dm3] 3R_11071715_SNP [dm6]	C	G	1.326e^-4	0.676	INTERGENIC
2L	10340513	2L_10340513_SNP [dm3] 2L_10340513_SNP [dm6]	T	A	1.330e^-4	0.676	INTRON SamDC	TF binding site BDTNP1_TFBS_dl
3R	17246039	3R_17246039_SNP [dm3] 3R_21420317_SNP [dm6]	G	A	1.342e^-4	0.677	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11627405	X_11627405_SNP [dm3] X_11733372_SNP [dm6]	G	T	1.344e^-4	0.677	UPSTREAM inaF-B INTRON CG15221 & 1 other
2R	15994493	2R_15994493_SNP [dm3] 2R_20106988_SNP [dm6]	C	G	1.353e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16386107	2L_16386107_SNP [dm3] 2L_16386107_SNP [dm6]	G	C	1.356e^-4	0.677	INTERGENIC
3L	7454870	3L_7454870_SNP [dm3] 3L_7461770_SNP [dm6]	C	A	1.363e^-4	0.677	INTERGENIC
3R	11598628	3R_11598628_SNP [dm3] 3R_15772906_SNP [dm6]	T	A	1.364e^-4	0.677	INTERGENIC
X	11627415	X_11627415_SNP [dm3] X_11733382_SNP [dm6]	C	T	1.364e^-4	0.677	UPSTREAM inaF-B INTRON CG15221 & 1 other
2L	2625616	2L_2625616_SNP [dm3] 2L_2625616_SNP [dm6]	G	C	1.364e^-4	0.677	EXON CR45705
2R	15569305	2R_15569305_SNP [dm3] 2R_19681800_SNP [dm6]	C	T	1.366e^-4	0.677	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
3L	5142783	3L_5142783_SNP [dm3] 3L_5149683_SNP [dm6]	G	C	1.372e^-4	0.677	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
2R	19940685	2R_19940685_SNP [dm3] 2R_24053162_SNP [dm6]	T	C	1.375e^-4	0.677	DOWNSTREAM sei INTRON ppk29
3L	23176867	3L_23176867_INS [dm3] 3L_23183767_INS [dm6]	A	AGTTTGTCTCTACGGTTATC...	1.376e^-4	0.677	INTRON CG34031 EXON CR43967	TF binding site BDTNP1_TFBS_dl
3L	4373050	3L_4373050_INS [dm3] 3L_4373050_INS [dm6]	A	AA	1.390e^-4	0.68	INTRON DopEcR	TF binding site mE1_TFBS_cad
2L	5105154	2L_5105154_SNP [dm3] 2L_5105154_SNP [dm6]	A	G	1.401e^-4	0.68	INTRON Msp300
3R	27894718	3R_27894718_INS [dm3] 3R_32068996_INS [dm6]	T	TT	1.403e^-4	0.68	UPSTREAM Map205	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18501185	2L_18501185_SNP [dm3] 2L_18501185_SNP [dm6]	A	C	1.403e^-4	0.68	UTR_5_PRIME kon UPSTREAM kon	TF binding site BDTNP1_TFBS_da
2L	18580387	2L_18580387_SNP [dm3] 2L_18580387_SNP [dm6]	C	G	1.417e^-4	0.68	INTRON Pde11
3L	12851980	3L_12851980_SNP [dm3] 3L_12858880_SNP [dm6]	G	A	1.418e^-4	0.68	SYNONYMOUS_CODING CG32107
2R	10201183	2R_10201183_SNP [dm3] 2R_14313678_SNP [dm6]	T	C	1.420e^-4	0.68	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2470827	3L_2470827_SNP [dm3] 3L_2470827_SNP [dm6]	G	C	1.420e^-4	0.68	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	8619728	X_8619728_INS [dm3] X_8725695_INS [dm6]	A	ATGAGGATGCGGA...	1.423e^-4	0.68	EXON CR43297
2R	9146522	2R_9146522_SNP [dm3] 2R_13259017_SNP [dm6]	C	G	1.425e^-4	0.68	DOWNSTREAM CG10799 INTERGENIC
2R	20592453	2R_20592453_SNP [dm3] 2R_24704930_SNP [dm6]	T	C	1.425e^-4	0.68	INTRON Mid1
X	6722741	X_6722741_SNP [dm3] X_6828708_SNP [dm6]	G	A	1.430e^-4	0.68	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
2L	2928261	2L_2928261_SNP [dm3] 2L_2928261_SNP [dm6]	C	A	1.430e^-4	0.68	INTRON lilli
2R	10920954	2R_10920954_SNP [dm3] 2R_15033449_SNP [dm6]	A	T	1.434e^-4	0.68	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8930592	2R_8930592_SNP [dm3] 2R_13043087_SNP [dm6]	A	G	1.436e^-4	0.68	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2471129	3L_2471129_SNP [dm3] 3L_2471129_SNP [dm6]	T	G	1.439e^-4	0.68	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	12314968	2L_12314968_SNP [dm3] 2L_12314968_SNP [dm6]	A	T	1.451e^-4	0.684	DOWNSTREAM CR45282 INTERGENIC
2R	12846291	2R_12846291_DEL [dm3] 2R_16958786_DEL [dm6]	AA	A	1.465e^-4	0.687	UTR_3_PRIME CG6665 DOWNSTREAM CG9010	TF binding site mE1_TFBS_cad
2L	2796843	2L_2796843_SNP [dm3] 2L_2796843_SNP [dm6]	A	T	1.466e^-4	0.687	UPSTREAM CR43821 INTRON Syt1
3L	8874831	3L_8874831_SNP [dm3] 3L_8881731_SNP [dm6]	G	A	1.469e^-4	0.687	INTRON dally
3L	2284971	3L_2284971_SNP [dm3] 3L_2284971_SNP [dm6]	T	G	1.486e^-4	0.691	INTRON MsR2
2R	15569407	2R_15569407_DEL [dm3] 2R_19681902_DEL [dm6]	ATTAAACTT	G	1.489e^-4	0.691	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15569417	2R_15569417_SNP [dm3] 2R_19681912_SNP [dm6]	G	A	1.489e^-4	0.691	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11489409	2L_11489409_SNP [dm3] 2L_11489409_SNP [dm6]	T	A	1.498e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13327014	X_13327014_SNP [dm3] X_13432981_SNP [dm6]	C	T	1.506e^-4	0.693	INTERGENIC
3R	10280958	3R_10280958_SNP [dm3] 3R_14455236_SNP [dm6]	C	G	1.508e^-4	0.693	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11598622	3R_11598622_SNP [dm3] 3R_15772900_SNP [dm6]	C	T	1.514e^-4	0.693	INTERGENIC
2L	16381665	2L_16381665_SNP [dm3] 2L_16381665_SNP [dm6]	T	A	1.517e^-4	0.693	INTERGENIC
2R	15569439	2R_15569439_SNP [dm3] 2R_19681934_SNP [dm6]	A	G	1.519e^-4	0.693	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9464452	2L_9464452_INS [dm3] 2L_9464452_INS [dm6]	G	GG	1.525e^-4	0.693	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7775191	2L_7775191_SNP [dm3] 2L_7775191_SNP [dm6]	C	T	1.533e^-4	0.693	DOWNSTREAM CG7179 & 1 other INTERGENIC
2R	9178635	2R_9178635_SNP [dm3] 2R_13291130_SNP [dm6]	G	T	1.539e^-4	0.693	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11598597	3R_11598597_SNP [dm3] 3R_15772875_SNP [dm6]	C	T	1.540e^-4	0.693	INTERGENIC
2R	13752126	2R_13752126_SNP [dm3] 2R_17864621_SNP [dm6]	G	C	1.544e^-4	0.693	NON_SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z
2L	15359216	2L_15359216_SNP [dm3] 2L_15359216_SNP [dm6]	T	A	1.545e^-4	0.693	INTERGENIC
2R	14198993	2R_14198993_SNP [dm3] 2R_18311488_SNP [dm6]	G	A	1.553e^-4	0.693	UPSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12279995	2L_12279995_SNP [dm3] 2L_12279995_SNP [dm6]	T	G	1.553e^-4	0.693	INTRON aret
2L	12280010	2L_12280010_SNP [dm3] 2L_12280010_SNP [dm6]	T	C	1.553e^-4	0.693	INTRON aret
2R	14755578	2R_14755578_SNP [dm3] 2R_18868073_SNP [dm6]	A	G	1.562e^-4	0.693	SYNONYMOUS_CODING CG43109 DOWNSTREAM DptB
2R	15569323	2R_15569323_SNP [dm3] 2R_19681818_SNP [dm6]	C	A	1.566e^-4	0.693	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
2R	13835100	2R_13835100_SNP [dm3] 2R_17947595_SNP [dm6]	G	A	1.578e^-4	0.693	INTERGENIC
2R	20255301	2R_20255301_SNP [dm3] 2R_24367778_SNP [dm6]	T	A	1.579e^-4	0.693	INTRON bs & 1 other	TF binding site mE1_TFBS_inv
3R	15833062	3R_15833062_INS [dm3] 3R_20007340_INS [dm6]	T	TAT	1.585e^-4	0.693	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10238635	3R_10238635_SNP [dm3] 3R_14412913_SNP [dm6]	T	A	1.589e^-4	0.693	INTRON cv-c
3L	6681556	3L_6681556_SNP [dm3] 3L_6688456_SNP [dm6]	A	G	1.589e^-4	0.693	DOWNSTREAM SP1173 INTERGENIC
2L	4023666	2L_4023666_SNP [dm3] 2L_4023666_SNP [dm6]	G	A	1.598e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15354834	3R_15354834_SNP [dm3] 3R_19529112_SNP [dm6]	C	T	1.601e^-4	0.693	INTRON Dys
2L	14933398	2L_14933398_SNP [dm3] 2L_14933398_SNP [dm6]	A	G	1.602e^-4	0.693	INTRON CG42313
3L	13870203	3L_13870203_SNP [dm3] 3L_13877103_SNP [dm6]	C	T	1.607e^-4	0.693	INTRON dysc
2L	17225504	2L_17225504_SNP [dm3] 2L_17225504_SNP [dm6]	T	C	1.609e^-4	0.693	INTRON beat-IIIc
3R	7698414	3R_7698414_SNP [dm3] 3R_11872692_SNP [dm6]	A	C	1.613e^-4	0.693	INTERGENIC
3R	14463046	3R_14463046_SNP [dm3] 3R_18637324_SNP [dm6]	A	C	1.616e^-4	0.693	INTRON qin & 1 other
2R	11415377	2R_11415377_SNP [dm3] 2R_15527872_SNP [dm6]	G	C	1.619e^-4	0.693	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17173632	2R_17173632_SNP [dm3] 2R_21286127_SNP [dm6]	G	A	1.628e^-4	0.693	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
2L	12280033	2L_12280033_SNP [dm3] 2L_12280033_SNP [dm6]	A	G	1.632e^-4	0.693	INTRON aret
3R	4526924	3R_4526924_DEL [dm3] 3R_8701202_DEL [dm6]	CC	C	1.633e^-4	0.693	INTERGENIC	enhancer FlyBase regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	1006794	2L_1006794_SNP [dm3] 2L_1006794_SNP [dm6]	A	T	1.638e^-4	0.693	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	17610622	2R_17610622_SNP [dm3] 2R_21723117_SNP [dm6]	C	T	1.640e^-4	0.693	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8618499	X_8618499_INS [dm3] X_8724466_INS [dm6]	A	AA	1.643e^-4	0.693	UPSTREAM CR43297 INTERGENIC
2L	1094108	2L_1094108_SNP [dm3] 2L_1094108_SNP [dm6]	G	A	1.645e^-4	0.693	INTRON CG4629
3R	7652077	3R_7652077_SNP [dm3] 3R_11826355_SNP [dm6]	A	C	1.653e^-4	0.693	INTRON CG6959
3L	19016965	3L_19016965_SNP [dm3] 3L_19023865_SNP [dm6]	A	T	1.655e^-4	0.693	INTRON nkd
2R	19155781	2R_19155781_SNP [dm3] 2R_23268258_SNP [dm6]	A	G	1.657e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4886284	3R_4886284_SNP [dm3] 3R_9060562_SNP [dm6]	T	C	1.658e^-4	0.693	INTRON Kdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9057667	2R_9057667_SNP [dm3] 2R_13170162_SNP [dm6]	C	T	1.658e^-4	0.693	SYNONYMOUS_CODING Spt-I EXON CR45142
2R	15569312	2R_15569312_SNP [dm3] 2R_19681807_SNP [dm6]	T	C	1.658e^-4	0.693	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
2L	11489507	2L_11489507_SNP [dm3] 2L_11489507_SNP [dm6]	A	G	1.659e^-4	0.693	INTERGENIC
2R	14318570	2R_14318570_SNP [dm3] 2R_18431065_SNP [dm6]	C	T	1.662e^-4	0.693	UTR_3_PRIME CG30118 DOWNSTREAM CG12263 INTRON CG30118
3L	19016952	3L_19016952_SNP [dm3] 3L_19023852_SNP [dm6]	A	T	1.663e^-4	0.693	INTRON nkd
2L	9777432	2L_9777432_SNP [dm3] 2L_9777432_SNP [dm6]	G	T	1.672e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2470333	3L_2470333_SNP [dm3] 3L_2470333_SNP [dm6]	G	C	1.675e^-4	0.695	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	15315132	3R_15315132_SNP [dm3] 3R_19489410_SNP [dm6]	G	A	1.685e^-4	0.696	DOWNSTREAM CG15025 INTRON Dys
3L	7406705	3L_7406705_SNP [dm3] 3L_7413605_SNP [dm6]	G	T	1.692e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	15037891	2R_15037891_SNP [dm3] 2R_19150386_SNP [dm6]	G	T	1.695e^-4	0.696	INTRON ena	TF binding site mE1_TFBS_Trl
3L	13083549	3L_13083549_SNP [dm3] 3L_13090449_SNP [dm6]	T	C	1.697e^-4	0.696	UPSTREAM CG11251 INTERGENIC
2L	8079933	2L_8079933_SNP [dm3] 2L_8079933_SNP [dm6]	T	G	1.700e^-4	0.696	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
3R	11598642	3R_11598642_SNP [dm3] 3R_15772920_SNP [dm6]	T	A	1.702e^-4	0.696	INTERGENIC
2R	15395617	2R_15395617_SNP [dm3] 2R_19508112_SNP [dm6]	A	G	1.704e^-4	0.696	UPSTREAM Ir56b INTERGENIC
2L	12205140	2L_12205140_SNP [dm3] 2L_12205140_SNP [dm6]	T	C	1.723e^-4	0.701	UPSTREAM aret INTRON aret
2L	18388556	2L_18388556_SNP [dm3] 2L_18388556_SNP [dm6]	C	T	1.731e^-4	0.701	SYNONYMOUS_CODING Fas3 INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13752212	2R_13752212_SNP [dm3] 2R_17864707_SNP [dm6]	G	A	1.733e^-4	0.701	SYNONYMOUS_CODING thr	TF binding site BDTNP1_TFBS_z
2L	10454546	2L_10454546_SNP [dm3] 2L_10454546_SNP [dm6]	A	G	1.736e^-4	0.701	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6901385	X_6901385_SNP [dm3] X_7007352_SNP [dm6]	C	A	1.740e^-4	0.701	INTRON Inx7
2R	19499367	2R_19499367_SNP [dm3] 2R_23611844_SNP [dm6]	G	A	1.742e^-4	0.701	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10749547	X_10749547_SNP [dm3] X_10855514_SNP [dm6]	G	A	1.743e^-4	0.701	SYNONYMOUS_CODING sofe UPSTREAM feo	TF binding site mE1_TFBS_cad
3L	13870656	3L_13870656_SNP [dm3] 3L_13877556_SNP [dm6]	C	T	1.760e^-4	0.703	INTRON dysc
2R	11081343	2R_11081343_SNP [dm3] 2R_15193838_SNP [dm6]	T	A	1.761e^-4	0.703	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3R	25514989	3R_25514989_SNP [dm3] 3R_29689267_SNP [dm6]	T	G	1.762e^-4	0.703	UTR_5_PRIME Obp99c
3L	5142777	3L_5142777_SNP [dm3] 3L_5149677_SNP [dm6]	A	G	1.763e^-4	0.703	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
2R	15569322	2R_15569322_SNP [dm3] 2R_19681817_SNP [dm6]	C	A	1.775e^-4	0.703	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
2R	12278560	2R_12278560_SNP [dm3] 2R_16391055_SNP [dm6]	A	G	1.775e^-4	0.703	INTRON Sema-2b
2R	10172162	2R_10172162_SNP [dm3] 2R_14284657_SNP [dm6]	A	G	1.779e^-4	0.703	INTRON Ih	TF binding site mE1_TFBS_cad
2L	6523956	2L_6523956_SNP [dm3] 2L_6523956_SNP [dm6]	A	T	1.781e^-4	0.703	INTRON CG31637
3L	9425671	3L_9425671_SNP [dm3] 3L_9432571_SNP [dm6]	G	A	1.787e^-4	0.703	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17583879	2R_17583879_SNP [dm3] 2R_21696374_SNP [dm6]	G	A	1.788e^-4	0.703	UPSTREAM CngB INTRON CngB	TF binding site mE1_TFBS_cad
2R	16661419	2R_16661419_SNP [dm3] 2R_20773914_SNP [dm6]	G	A	1.794e^-4	0.703	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_chinmo
2L	19232925	2L_19232925_SNP [dm3] 2L_19232925_SNP [dm6]	T	A	1.799e^-4	0.703	INTERGENIC
3R	11598632	3R_11598632_SNP [dm3] 3R_15772910_SNP [dm6]	C	T	1.799e^-4	0.703	INTERGENIC
3L	997197	3L_997197_INS [dm3] 3L_997197_INS [dm6]	A	AA	1.810e^-4	0.703	UTR_3_PRIME trio DOWNSTREAM trio
2L	6523995	2L_6523995_SNP [dm3] 2L_6523995_SNP [dm6]	G	A	1.815e^-4	0.703	INTRON CG31637
3L	6384780	3L_6384780_MNP [dm3] 3L_6391680_MNP [dm6]	CGG	AAA	1.815e^-4	0.703	INTERGENIC
2R	15901191	2R_15901191_SNP [dm3] 2R_20013686_SNP [dm6]	T	A	1.815e^-4	0.703	UPSTREAM CR44629 INTERGENIC
2L	9447384	2L_9447384_SNP [dm3] 2L_9447384_SNP [dm6]	G	A	1.818e^-4	0.703	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	11732104	2R_11732104_SNP [dm3] 2R_15844599_SNP [dm6]	G	A	1.819e^-4	0.703	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_sens
2R	16666260	2R_16666260_SNP [dm3] 2R_20778755_SNP [dm6]	A	T	1.829e^-4	0.705	NON_SYNONYMOUS_CODING CG43711	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16171710	X_16171710_DEL [dm3] X_16277677_DEL [dm6]	AA	A	1.832e^-4	0.705	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12073525	3L_12073525_SNP [dm3] 3L_12080425_SNP [dm6]	A	G	1.834e^-4	0.705	INTRON Sema-5c	TF binding site BDTNP1_TFBS_Med
2R	18999312	2R_18999312_SNP [dm3] 2R_23111789_SNP [dm6]	A	G	1.837e^-4	0.705	UPSTREAM CR44781 INTERGENIC
2R	8930527	2R_8930527_SNP [dm3] 2R_13043022_SNP [dm6]	G	A	1.857e^-4	0.709	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	16019985	2R_16019985_SNP [dm3] 2R_20132480_SNP [dm6]	C	G	1.861e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19786024	2R_19786024_SNP [dm3] 2R_23898501_SNP [dm6]	T	C	1.864e^-4	0.709	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	20592433	2R_20592433_SNP [dm3] 2R_24704910_SNP [dm6]	G	A	1.869e^-4	0.709	INTRON Mid1
2R	19155861	2R_19155861_SNP [dm3] 2R_23268338_SNP [dm6]	C	G	1.869e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21011063	2L_21011063_SNP [dm3] 2L_21011063_SNP [dm6]	G	C	1.888e^-4	0.709	INTRON CG42238
2L	13925894	2L_13925894_SNP [dm3] 2L_13925894_SNP [dm6]	G	A	1.892e^-4	0.709	INTRON Ance-3
2L	11298215	2L_11298215_SNP [dm3] 2L_11298215_SNP [dm6]	C	A	1.895e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	17693774	2R_17693774_SNP [dm3] 2R_21806269_SNP [dm6]	G	A	1.899e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_kn
3L	11043959	3L_11043959_SNP [dm3] 3L_11050859_SNP [dm6]	G	C	1.903e^-4	0.709	UPSTREAM CG43693 INTRON CG43693 EXON CR45119
2R	18327514	2R_18327514_SNP [dm3] 2R_22440009_SNP [dm6]	A	C	1.903e^-4	0.709	INTERGENIC
3R	21402839	3R_21402839_SNP [dm3] 3R_25577117_SNP [dm6]	A	T	1.905e^-4	0.709	INTRON msi
2L	11864182	2L_11864182_SNP [dm3] 2L_11864182_SNP [dm6]	A	C	1.924e^-4	0.709	INTRON Pde1c
X	11159805	X_11159805_SNP [dm3] X_11265772_SNP [dm6]	T	C	1.925e^-4	0.709	INTRON CG44422	TF binding site mE1_TFBS_inv
2R	14755730	2R_14755730_SNP [dm3] 2R_18868225_SNP [dm6]	T	C	1.928e^-4	0.709	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2R	9930014	2R_9930014_SNP [dm3] 2R_14042509_SNP [dm6]	T	G	1.930e^-4	0.709	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	26693292	3R_26693292_SNP [dm3] 3R_30867570_SNP [dm6]	T	A	1.930e^-4	0.709	UTR_5_PRIME Cpr100A
2L	21014734	2L_21014734_SNP [dm3] 2L_21014734_SNP [dm6]	T	C	1.941e^-4	0.709	INTRON CG42238
X	17278316	X_17278316_SNP [dm3] X_17384283_SNP [dm6]	G	C	1.946e^-4	0.709	INTERGENIC
3L	18317048	3L_18317048_SNP [dm3] 3L_18323948_SNP [dm6]	A	G	1.947e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14765723	2R_14765723_SNP [dm3] 2R_18878218_SNP [dm6]	T	G	1.951e^-4	0.709	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11489513	2L_11489513_SNP [dm3] 2L_11489513_SNP [dm6]	A	T	1.957e^-4	0.709	INTERGENIC
2L	10340505	2L_10340505_SNP [dm3] 2L_10340505_SNP [dm6]	C	T	1.963e^-4	0.709	INTRON SamDC	TF binding site BDTNP1_TFBS_dl
2R	15598059	2R_15598059_SNP [dm3] 2R_19710554_SNP [dm6]	G	T	1.974e^-4	0.709	INTERGENIC	regulatory region REDfly_CRMs
2L	9464619	2L_9464619_SNP [dm3] 2L_9464619_SNP [dm6]	G	T	1.977e^-4	0.709	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26452205	3R_26452205_SNP [dm3] 3R_30626483_SNP [dm6]	C	T	1.991e^-4	0.709	UPSTREAM CR44136 DOWNSTREAM CG2267 INTERGENIC
2R	12830997	2R_12830997_SNP [dm3] 2R_16943492_SNP [dm6]	C	T	1.995e^-4	0.709	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E	TF binding site mE1_TFBS_inv
2L	8371827	2L_8371827_SNP [dm3] 2L_8371827_SNP [dm6]	G	A	2.003e^-4	0.709	UPSTREAM CG17292 INTRON CG17292
3L	9821112	3L_9821112_SNP [dm3] 3L_9828012_SNP [dm6]	A	G	2.003e^-4	0.709	INTRON CG43897	TF binding site mE1_TFBS_cad
3R	4660317	3R_4660317_SNP [dm3] 3R_8834595_SNP [dm6]	C	T	2.007e^-4	0.709	NON_SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	14808199	X_14808199_SNP [dm3] X_14914166_SNP [dm6]	C	T	2.009e^-4	0.709	UPSTREAM CG12398 INTRON Flo2
3R	19885091	3R_19885091_SNP [dm3] 3R_24059369_SNP [dm6]	A	G	2.010e^-4	0.709	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
3L	2143432	3L_2143432_SNP [dm3] 3L_2143432_SNP [dm6]	C	T	2.011e^-4	0.709	INTRON zormin
3R	17264112	3R_17264112_INS [dm3] 3R_21438390_INS [dm6]	T	TC	2.011e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	19028919	2R_19028919_DEL [dm3] 2R_23141396_DEL [dm6]	TG	T	2.019e^-4	0.709	UPSTREAM CG13544 & 1 other INTERGENIC
3L	2466614	3L_2466614_SNP [dm3] 3L_2466614_SNP [dm6]	T	C	2.033e^-4	0.709	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1249877	3L_1249877_SNP [dm3] 3L_1249877_SNP [dm6]	G	A	2.034e^-4	0.709	SYNONYMOUS_CODING Sac1 UPSTREAM CG9129	TF binding site mE1_TFBS_sens
3L	7981196	3L_7981196_SNP [dm3] 3L_7988096_SNP [dm6]	A	G	2.040e^-4	0.709	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	1672637	3L_1672637_SNP [dm3] 3L_1672637_SNP [dm6]	G	C	2.052e^-4	0.709	NON_SYNONYMOUS_CODING CG13930	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18468641	X_18468641_SNP [dm3] X_18574608_SNP [dm6]	A	T	2.063e^-4	0.709	INTERGENIC
3L	13437219	3L_13437219_SNP [dm3] 3L_13444119_SNP [dm6]	G	C	2.063e^-4	0.709	INTRON CG10732
2L	9460410	2L_9460410_SNP [dm3] 2L_9460410_SNP [dm6]	T	C	2.065e^-4	0.709	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16326295	2R_16326295_SNP [dm3] 2R_20438790_SNP [dm6]	A	T	2.068e^-4	0.709	INTRON CG12484
3R	10766469	3R_10766469_SNP [dm3] 3R_14940747_SNP [dm6]	A	T	2.071e^-4	0.709	INTERGENIC
3L	2470887	3L_2470887_SNP [dm3] 3L_2470887_SNP [dm6]	C	G	2.074e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	18578967	2R_18578967_SNP [dm3] 2R_22691462_SNP [dm6]	T	A	2.079e^-4	0.709	EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10749745	X_10749745_SNP [dm3] X_10855712_SNP [dm6]	T	C	2.083e^-4	0.709	SYNONYMOUS_CODING sofe UPSTREAM feo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5105175	2L_5105175_SNP [dm3] 2L_5105175_SNP [dm6]	G	T	2.085e^-4	0.709	INTRON Msp300
2L	14866127	2L_14866127_SNP [dm3] 2L_14866127_SNP [dm6]	C	T	2.089e^-4	0.709	INTERGENIC
3L	995306	3L_995306_SNP [dm3] 3L_995306_SNP [dm6]	A	C	2.094e^-4	0.709	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2R	18392673	2R_18392673_SNP [dm3] 2R_22505168_SNP [dm6]	G	A	2.104e^-4	0.709	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5309149	2R_5309149_SNP [dm3] 2R_9421644_SNP [dm6]	A	C	2.105e^-4	0.709	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	3133376	3R_3133376_SNP [dm3] 3R_7307654_SNP [dm6]	A	G	2.105e^-4	0.709	INTRON rn
2R	12024031	2R_12024031_SNP [dm3] 2R_16136526_SNP [dm6]	T	C	2.107e^-4	0.709	SYNONYMOUS_CODING spin UTR_3_PRIME spin
2L	10586152	2L_10586152_SNP [dm3] 2L_10586152_SNP [dm6]	G	C	2.110e^-4	0.709	INTRON Trim9	TF binding site mE1_TFBS_chinmo
3L	15285144	3L_15285144_SNP [dm3] 3L_15292044_SNP [dm6]	A	G	2.115e^-4	0.709	INTERGENIC
3L	13870082	3L_13870082_SNP [dm3] 3L_13876982_SNP [dm6]	A	C	2.116e^-4	0.709	INTRON dysc
3L	18150762	3L_18150762_SNP [dm3] 3L_18157662_SNP [dm6]	C	A	2.117e^-4	0.709	INTRON CG13699
3R	23990307	3R_23990307_SNP [dm3] 3R_28164585_SNP [dm6]	T	C	2.119e^-4	0.709	INTRON CG34354
X	12834969	X_12834969_SNP [dm3] X_12940936_SNP [dm6]	T	A	2.122e^-4	0.709	UPSTREAM fne INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15555325	2L_15555325_SNP [dm3] 2L_15555325_SNP [dm6]	G	A	2.123e^-4	0.709	INTRON kek3
2L	9462957	2L_9462957_SNP [dm3] 2L_9462957_SNP [dm6]	A	G	2.129e^-4	0.709	UTR_3_PRIME numb
2L	11298303	2L_11298303_SNP [dm3] 2L_11298303_SNP [dm6]	C	T	2.131e^-4	0.709	INTERGENIC
X	7799084	X_7799084_SNP [dm3] X_7905051_SNP [dm6]	T	G	2.137e^-4	0.709	UTR_3_PRIME dpr14 DOWNSTREAM dpr14
3L	2471106	3L_2471106_SNP [dm3] 3L_2471106_SNP [dm6]	T	C	2.141e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	2471111	3L_2471111_SNP [dm3] 3L_2471111_SNP [dm6]	T	G	2.141e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	2471158	3L_2471158_SNP [dm3] 3L_2471158_SNP [dm6]	T	A	2.141e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	9467339	2L_9467339_SNP [dm3] 2L_9467339_SNP [dm6]	T	A	2.144e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20849272	2L_20849272_SNP [dm3] 2L_20849272_SNP [dm6]	G	C	2.148e^-4	0.709	UPSTREAM CG14402 DOWNSTREAM CG31676 INTERGENIC
2R	3840102	2R_3840102_SNP [dm3] 2R_7952597_SNP [dm6]	C	A	2.149e^-4	0.709	INTRON CG14764
3L	10751318	3L_10751318_SNP [dm3] 3L_10758218_SNP [dm6]	C	A	2.159e^-4	0.709	INTERGENIC
X	18332565	X_18332565_SNP [dm3] X_18438532_SNP [dm6]	A	T	2.180e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
2L	12289865	2L_12289865_SNP [dm3] 2L_12289865_SNP [dm6]	C	T	2.182e^-4	0.709	INTRON aret	TF binding site BDTNP1_TFBS_twi
3R	21241328	3R_21241328_SNP [dm3] 3R_25415606_SNP [dm6]	T	A	2.194e^-4	0.709	INTRON Fur1
3L	12507442	3L_12507442_SNP [dm3] 3L_12514342_SNP [dm6]	C	G	2.198e^-4	0.709	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2L	8995235	2L_8995235_SNP [dm3] 2L_8995235_SNP [dm6]	A	G	2.200e^-4	0.709	NON_SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien
3L	3344406	3L_3344406_SNP [dm3] 3L_3344406_SNP [dm6]	A	G	2.201e^-4	0.709	INTRON kst
3L	12507322	3L_12507322_SNP [dm3] 3L_12514222_SNP [dm6]	A	C	2.204e^-4	0.709	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	16173546	X_16173546_SNP [dm3] X_16279513_SNP [dm6]	T	A	2.205e^-4	0.709	UTR_5_PRIME eas INTRON eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	15596705	2L_15596705_SNP [dm3] 2L_15596705_SNP [dm6]	A	G	2.210e^-4	0.709	INTERGENIC
3L	2466524	3L_2466524_DEL [dm3] 3L_2466524_DEL [dm6]	CTTT	C	2.226e^-4	0.709	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2626335	2L_2626335_INS [dm3] 2L_2626335_INS [dm6]	G	GG	2.231e^-4	0.709	EXON CR45705
3R	8650366	3R_8650366_SNP [dm3] 3R_12824644_SNP [dm6]	T	C	2.231e^-4	0.709	INTERGENIC
2R	15033860	2R_15033860_SNP [dm3] 2R_19146355_SNP [dm6]	A	G	2.242e^-4	0.709	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11296582	2L_11296582_SNP [dm3] 2L_11296582_SNP [dm6]	C	T	2.242e^-4	0.709	INTERGENIC
3R	18316246	3R_18316246_SNP [dm3] 3R_22490524_SNP [dm6]	T	G	2.246e^-4	0.709	SYNONYMOUS_CODING T-cp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17278321	X_17278321_SNP [dm3] X_17384288_SNP [dm6]	A	G	2.247e^-4	0.709	INTERGENIC
2R	13688272	2R_13688272_SNP [dm3] 2R_17800767_SNP [dm6]	C	T	2.256e^-4	0.709	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10481689	X_10481689_SNP [dm3] X_10587656_SNP [dm6]	A	G	2.257e^-4	0.709	INTERGENIC
2L	9647996	2L_9647996_SNP [dm3] 2L_9647996_SNP [dm6]	C	A	2.259e^-4	0.709	SYNONYMOUS_CODING Apoltp
2L	17225351	2L_17225351_SNP [dm3] 2L_17225351_SNP [dm6]	A	C	2.271e^-4	0.709	INTRON beat-IIIc
3R	15354846	3R_15354846_SNP [dm3] 3R_19529124_SNP [dm6]	A	C	2.274e^-4	0.709	INTRON Dys
3L	21285905	3L_21285905_SNP [dm3] 3L_21292805_SNP [dm6]	A	T	2.276e^-4	0.709	UPSTREAM Cpr78Ca INTERGENIC
2L	17395307	2L_17395307_SNP [dm3] 2L_17395307_SNP [dm6]	T	A	2.278e^-4	0.709	INTRON CLIP-190
3L	2467399	3L_2467399_DEL [dm3] 3L_2467399_DEL [dm6]	GA	G	2.283e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10087305	2L_10087305_SNP [dm3] 2L_10087305_SNP [dm6]	G	C	2.284e^-4	0.709	INTRON CG44153	TF binding site mE1_TFBS_chinmo
3L	19063674	3L_19063674_SNP [dm3] 3L_19070574_SNP [dm6]	A	C	2.293e^-4	0.709	INTRON Mkp3
3L	11795096	3L_11795096_SNP [dm3] 3L_11801996_SNP [dm6]	A	T	2.294e^-4	0.709	UTR_3_PRIME CG42255 UPSTREAM tRNA:CR32093
3L	18085460	3L_18085460_SNP [dm3] 3L_18092360_SNP [dm6]	T	C	2.300e^-4	0.709	INTRON CG13698
3L	14010330	3L_14010330_SNP [dm3] 3L_14017230_SNP [dm6]	G	T	2.316e^-4	0.709	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10827936	2R_10827936_SNP [dm3] 2R_14940431_SNP [dm6]	A	G	2.317e^-4	0.709	UTR_3_PRIME Lap1 DOWNSTREAM Lap1
3R	18302813	3R_18302813_SNP [dm3] 3R_22477091_SNP [dm6]	T	A	2.333e^-4	0.709	INTRON Nrx-1
2R	17613009	2R_17613009_SNP [dm3] 2R_21725504_SNP [dm6]	G	A	2.334e^-4	0.709	INTERGENIC
2R	12038770	2R_12038770_SNP [dm3] 2R_16151265_SNP [dm6]	C	T	2.336e^-4	0.709	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14085335	2R_14085335_SNP [dm3] 2R_18197830_SNP [dm6]	C	T	2.343e^-4	0.709	INTERGENIC
X	4665778	X_4665778_SNP [dm3] X_4771745_SNP [dm6]	G	C	2.344e^-4	0.709	UPSTREAM Bteb2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10442905	2L_10442905_DEL [dm3] 2L_10442905_DEL [dm6]	TG	T	2.345e^-4	0.709	UPSTREAM CR45375 INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9426785	3L_9426785_INS [dm3] 3L_9433685_INS [dm6]	T	TT	2.347e^-4	0.709	UTR_3_PRIME CG42526 INTRON MTF-1
2L	2626596	2L_2626596_SNP [dm3] 2L_2626596_SNP [dm6]	T	C	2.354e^-4	0.709	EXON CR45705
3L	7455101	3L_7455101_SNP [dm3] 3L_7462001_SNP [dm6]	A	T	2.356e^-4	0.709	INTERGENIC
3R	9292130	3R_9292130_SNP [dm3] 3R_13466408_SNP [dm6]	T	C	2.356e^-4	0.709	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8142652	3L_8142652_SNP [dm3] 3L_8149552_SNP [dm6]	G	C	2.358e^-4	0.709	INTRON CG13676
3L	995213	3L_995213_SNP [dm3] 3L_995213_SNP [dm6]	C	T	2.368e^-4	0.709	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
3R	22316793	3R_22316793_SNP [dm3] 3R_26491071_SNP [dm6]	A	T	2.370e^-4	0.709	INTRON plum
2L	9392497	2L_9392497_SNP [dm3] 2L_9392497_SNP [dm6]	T	G	2.373e^-4	0.709	DOWNSTREAM Aldh INTRON Shawl
3L	1355362	3L_1355362_SNP [dm3] 3L_1355362_SNP [dm6]	G	T	2.377e^-4	0.709	INTRON Ptp61F	TF binding site mE1_TFBS_inv
3R	14552869	3R_14552869_SNP [dm3] 3R_18727147_SNP [dm6]	T	A	2.378e^-4	0.709	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
3L	563583	3L_563583_SNP [dm3] 3L_563583_SNP [dm6]	G	A	2.383e^-4	0.709	INTRON hipk
3R	14876511	3R_14876511_SNP [dm3] 3R_19050789_SNP [dm6]	A	T	2.398e^-4	0.709	INTRON cdi
3R	24205494	3R_24205494_SNP [dm3] 3R_28379772_SNP [dm6]	T	G	2.398e^-4	0.709	INTERGENIC
3L	19150473	3L_19150473_SNP [dm3] 3L_19157373_SNP [dm6]	T	G	2.399e^-4	0.709	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14340005	2R_14340005_SNP [dm3] 2R_18452500_SNP [dm6]	A	G	2.402e^-4	0.709	SYNONYMOUS_CODING CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13868521	3L_13868521_INS [dm3] 3L_13875421_INS [dm6]	A	AA	2.407e^-4	0.709	INTRON dysc
2L	3888982	2L_3888982_SNP [dm3] 2L_3888982_SNP [dm6]	C	T	2.410e^-4	0.709	UPSTREAM capu INTRON capu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14061629	2R_14061629_SNP [dm3] 2R_18174124_SNP [dm6]	G	C	2.413e^-4	0.709	NON_SYNONYMOUS_CODING CG10916 DOWNSTREAM CR45315	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3293557	X_3293557_SNP [dm3] X_3399524_SNP [dm6]	G	C	2.415e^-4	0.709	INTRON CR44999 & 1 other
3L	8403641	3L_8403641_SNP [dm3] 3L_8410541_SNP [dm6]	A	G	2.417e^-4	0.709	SYNONYMOUS_CODING Oseg1
2R	8166826	2R_8166826_SNP [dm3] 2R_12279321_SNP [dm6]	T	C	2.424e^-4	0.709	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	15729947	2R_15729947_SNP [dm3] 2R_19842442_SNP [dm6]	C	A	2.431e^-4	0.709	DOWNSTREAM CG44569 INTERGENIC
2R	18626735	2R_18626735_SNP [dm3] 2R_22739230_SNP [dm6]	A	G	2.441e^-4	0.709	INTRON jbug
3R	21410612	3R_21410612_SNP [dm3] 3R_25584890_SNP [dm6]	T	C	2.447e^-4	0.709	INTRON msi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18500821	2L_18500821_SNP [dm3] 2L_18500821_SNP [dm6]	G	A	2.448e^-4	0.709	UTR_5_PRIME kon	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2466471	3L_2466471_SNP [dm3] 3L_2466471_SNP [dm6]	A	G	2.449e^-4	0.709	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14928896	2R_14928896_SNP [dm3] 2R_19041391_SNP [dm6]	T	C	2.450e^-4	0.709	INTERGENIC
2R	7576566	2R_7576566_SNP [dm3] 2R_11689061_SNP [dm6]	G	A	2.451e^-4	0.709	UTR_3_PRIME wal DOWNSTREAM Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	13003025	3L_13003025_SNP [dm3] 3L_13009925_SNP [dm6]	T	C	2.452e^-4	0.709	DOWNSTREAM CG14117 INTRON CG11261
3R	14081699	3R_14081699_SNP [dm3] 3R_18255977_SNP [dm6]	T	C	2.457e^-4	0.709	SYNONYMOUS_CODING moi UTR_5_PRIME Tgs1 UPSTREAM Rpb4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21014871	2L_21014871_SNP [dm3] 2L_21014871_SNP [dm6]	G	A	2.464e^-4	0.709	INTRON CG42238
3R	5803110	3R_5803110_SNP [dm3] 3R_9977388_SNP [dm6]	T	C	2.468e^-4	0.709	INTRON Glut4EF
3R	14530149	3R_14530149_SNP [dm3] 3R_18704427_SNP [dm6]	A	G	2.468e^-4	0.709	INTERGENIC
3R	15833384	3R_15833384_SNP [dm3] 3R_20007662_SNP [dm6]	T	C	2.479e^-4	0.709	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15569375	2R_15569375_SNP [dm3] 2R_19681870_SNP [dm6]	A	G	2.487e^-4	0.709	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
3L	23029426	3L_23029426_SNP [dm3] 3L_23036326_SNP [dm6]	T	C	2.493e^-4	0.709	INTRON nrm	transposable element FlyBase
2R	20582568	2R_20582568_SNP [dm3] 2R_24695045_SNP [dm6]	T	C	2.496e^-4	0.709	UPSTREAM ST6Gal DOWNSTREAM Mid1 INTERGENIC
2R	14061107	2R_14061107_SNP [dm3] 2R_18173602_SNP [dm6]	A	C	2.497e^-4	0.709	UPSTREAM Dgp-1 & 1 other DOWNSTREAM CR45315 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	21276512	3L_21276512_SNP [dm3] 3L_21283412_SNP [dm6]	T	C	2.498e^-4	0.709	NON_SYNONYMOUS_CODING CG12974	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18332470	X_18332470_DEL [dm3] X_18438437_DEL [dm6]	ACAAAT	G	2.502e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
X	18332477	X_18332477_DEL [dm3] X_18438444_DEL [dm6]	CTT	C	2.502e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
X	18332484	X_18332484_MNP [dm3] X_18438451_MNP [dm6]	GCT	CTA	2.502e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
X	18332496	X_18332496_SNP [dm3] X_18438463_SNP [dm6]	A	T	2.502e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
3R	7698499	3R_7698499_DEL [dm3] 3R_11872777_DEL [dm6]	GG	G	2.517e^-4	0.709	INTERGENIC
X	2343871	X_2343871_SNP [dm3] X_2449838_SNP [dm6]	T	A	2.519e^-4	0.709	SYNONYMOUS_CODING z INTRON boi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2285055	3L_2285055_SNP [dm3] 3L_2285055_SNP [dm6]	A	T	2.525e^-4	0.709	INTRON MsR2
2R	19168753	2R_19168753_SNP [dm3] 2R_23281230_SNP [dm6]	A	G	2.528e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9236844	3L_9236844_SNP [dm3] 3L_9243744_SNP [dm6]	C	T	2.534e^-4	0.709	INTERGENIC
3R	11423521	3R_11423521_SNP [dm3] 3R_15597799_SNP [dm6]	A	C	2.534e^-4	0.709	INTERGENIC
3L	15886584	3L_15886584_SNP [dm3] 3L_15893484_SNP [dm6]	G	A	2.541e^-4	0.709	INTRON pHCl
3L	2209241	3L_2209241_SNP [dm3] 3L_2209241_SNP [dm6]	T	G	2.543e^-4	0.709	INTERGENIC
3L	13083499	3L_13083499_SNP [dm3] 3L_13090399_SNP [dm6]	A	G	2.545e^-4	0.709	UPSTREAM CG11251 INTERGENIC
2L	8912485	2L_8912485_SNP [dm3] 2L_8912485_SNP [dm6]	G	T	2.550e^-4	0.709	INTRON CG34398
3L	995234	3L_995234_SNP [dm3] 3L_995234_SNP [dm6]	T	C	2.558e^-4	0.709	SYNONYMOUS_CODING CG12038 DOWNSTREAM trio	TF binding site mE1_TFBS_cad
2L	14866140	2L_14866140_DEL [dm3] 2L_14866140_DEL [dm6]	TA	T	2.559e^-4	0.709	INTERGENIC
3L	18477639	3L_18477639_SNP [dm3] 3L_18484539_SNP [dm6]	T	G	2.561e^-4	0.709	DOWNSTREAM AstC-R2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10222093	X_10222093_SNP [dm3] X_10328060_SNP [dm6]	T	C	2.564e^-4	0.709	SYNONYMOUS_CODING CG2909 DOWNSTREAM Gip	TF binding site mE1_TFBS_cad
3L	730121	3L_730121_SNP [dm3] 3L_730121_SNP [dm6]	A	C	2.564e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9458778	2L_9458778_SNP [dm3] 2L_9458778_SNP [dm6]	A	C	2.566e^-4	0.709	INTRON numb
3R	20237749	3R_20237749_SNP [dm3] 3R_24412027_SNP [dm6]	C	A	2.566e^-4	0.709	INTRON nAChRalpha1
2R	14625469	2R_14625469_SNP [dm3] 2R_18737964_SNP [dm6]	C	T	2.574e^-4	0.709	UPSTREAM CG33998 INTRON Hs3st-A
X	18332460	X_18332460_SNP [dm3] X_18438427_SNP [dm6]	T	A	2.577e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
3L	12587124	3L_12587124_SNP [dm3] 3L_12594024_SNP [dm6]	T	A	2.582e^-4	0.709	INTRON ara
3L	5600516	3L_5600516_SNP [dm3] 3L_5607416_SNP [dm6]	A	T	2.584e^-4	0.709	SYNONYMOUS_CODING Eaf6 DOWNSTREAM mthl2
2R	16175402	2R_16175402_SNP [dm3] 2R_20287897_SNP [dm6]	C	T	2.584e^-4	0.709	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2R	18915452	2R_18915452_SNP [dm3] 2R_23027929_SNP [dm6]	G	T	2.585e^-4	0.709	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
2L	20838372	2L_20838372_SNP [dm3] 2L_20838372_SNP [dm6]	C	A	2.589e^-4	0.709	UPSTREAM Spn38F INTERGENIC	transposable element FlyBase
2L	3889666	2L_3889666_SNP [dm3] 2L_3889666_SNP [dm6]	G	T	2.589e^-4	0.709	SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
3L	2471173	3L_2471173_SNP [dm3] 3L_2471173_SNP [dm6]	C	A	2.589e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	15569376	2R_15569376_SNP [dm3] 2R_19681871_SNP [dm6]	C	T	2.593e^-4	0.709	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9464460	2L_9464460_SNP [dm3] 2L_9464460_SNP [dm6]	A	T	2.594e^-4	0.709	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17607650	2R_17607650_SNP [dm3] 2R_21720145_SNP [dm6]	C	T	2.617e^-4	0.709	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	4333751	2L_4333751_SNP [dm3] 2L_4333751_SNP [dm6]	T	C	2.619e^-4	0.709	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11490748	2L_11490748_SNP [dm3] 2L_11490748_SNP [dm6]	C	T	2.626e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9425046	3L_9425046_SNP [dm3] 3L_9431946_SNP [dm6]	T	A	2.627e^-4	0.709	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10931790	2R_10931790_SNP [dm3] 2R_15044285_SNP [dm6]	A	G	2.629e^-4	0.709	INTERGENIC
3R	5601901	3R_5601901_SNP [dm3] 3R_9776179_SNP [dm6]	G	T	2.630e^-4	0.709	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
2L	14865125	2L_14865125_SNP [dm3] 2L_14865125_SNP [dm6]	A	C	2.634e^-4	0.709	INTERGENIC
3L	18544643	3L_18544643_SNP [dm3] 3L_18551543_SNP [dm6]	G	C	2.636e^-4	0.709	INTERGENIC
2R	10171890	2R_10171890_SNP [dm3] 2R_14284385_SNP [dm6]	G	T	2.637e^-4	0.709	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23799156	3R_23799156_SNP [dm3] 3R_27973434_SNP [dm6]	G	A	2.638e^-4	0.709	INTRON betaTub97EF
3L	19150620	3L_19150620_SNP [dm3] 3L_19157520_SNP [dm6]	A	G	2.639e^-4	0.709	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17114107	2R_17114107_SNP [dm3] 2R_21226602_SNP [dm6]	G	A	2.643e^-4	0.709	INTRON ASPP
3R	15262351	3R_15262351_SNP [dm3] 3R_19436629_SNP [dm6]	C	T	2.644e^-4	0.709	INTRON CG31221
3R	21241584	3R_21241584_SNP [dm3] 3R_25415862_SNP [dm6]	C	A	2.648e^-4	0.709	INTRON Fur1
3R	18393695	3R_18393695_SNP [dm3] 3R_22567973_SNP [dm6]	A	G	2.651e^-4	0.709	INTERGENIC
3R	12748249	3R_12748249_SNP [dm3] 3R_16922527_SNP [dm6]	A	G	2.654e^-4	0.709	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20935130	2R_20935130_SNP [dm3] 2R_25047607_SNP [dm6]	C	A	2.660e^-4	0.709	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	2626971	2L_2626971_SNP [dm3] 2L_2626971_SNP [dm6]	C	T	2.661e^-4	0.709	EXON CR45705
2L	2626972	2L_2626972_SNP [dm3] 2L_2626972_SNP [dm6]	C	T	2.661e^-4	0.709	EXON CR45705
3L	9424060	3L_9424060_SNP [dm3] 3L_9430960_SNP [dm6]	G	A	2.664e^-4	0.709	NON_SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6394779	2L_6394779_SNP [dm3] 2L_6394779_SNP [dm6]	G	A	2.664e^-4	0.709	INTRON CG42368
2L	6394800	2L_6394800_SNP [dm3] 2L_6394800_SNP [dm6]	A	G	2.664e^-4	0.709	INTRON CG42368
2L	6394801	2L_6394801_SNP [dm3] 2L_6394801_SNP [dm6]	A	T	2.664e^-4	0.709	INTRON CG42368
2L	4483026	2L_4483026_SNP [dm3] 2L_4483026_SNP [dm6]	A	G	2.669e^-4	0.709	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16102012	2R_16102012_SNP [dm3] 2R_20214507_SNP [dm6]	G	A	2.669e^-4	0.709	INTERGENIC
3L	13870223	3L_13870223_SNP [dm3] 3L_13877123_SNP [dm6]	T	C	2.675e^-4	0.709	INTRON dysc
X	14232367	X_14232367_SNP [dm3] X_14338334_SNP [dm6]	A	T	2.676e^-4	0.709	INTRON dpr8
3R	21403009	3R_21403009_SNP [dm3] 3R_25577287_SNP [dm6]	A	G	2.679e^-4	0.709	INTRON msi
X	8619930	X_8619930_SNP [dm3] X_8725897_SNP [dm6]	A	T	2.686e^-4	0.709	EXON CR43297
2L	8374440	2L_8374440_SNP [dm3] 2L_8374440_SNP [dm6]	G	T	2.686e^-4	0.709	UPSTREAM Wdr82 DOWNSTREAM CG17292 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	23042786	3L_23042786_SNP [dm3] 3L_23049686_SNP [dm6]	G	A	2.706e^-4	0.709	INTERGENIC	transposable element FlyBase
2L	2741296	2L_2741296_SNP [dm3] 2L_2741296_SNP [dm6]	A	G	2.713e^-4	0.709	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1769594	2R_1769594_SNP [dm3] 2R_5882089_SNP [dm6]	G	T	2.716e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8619901	X_8619901_DEL [dm3] X_8725868_DEL [dm6]	TGT	C	2.718e^-4	0.709	EXON CR43297
2R	17301550	2R_17301550_SNP [dm3] 2R_21414045_SNP [dm6]	T	A	2.719e^-4	0.709	INTRON Sdc
X	18332482	X_18332482_SNP [dm3] X_18438449_SNP [dm6]	G	A	2.721e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
3L	8637461	3L_8637461_SNP [dm3] 3L_8644361_SNP [dm6]	C	A	2.722e^-4	0.709	DOWNSTREAM Cpr66D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5474195	3L_5474195_SNP [dm3] 3L_5481095_SNP [dm6]	A	T	2.730e^-4	0.709	SYNONYMOUS_CODING CG4835
X	14232626	X_14232626_SNP [dm3] X_14338593_SNP [dm6]	T	G	2.732e^-4	0.709	INTRON dpr8
3L	16384969	3L_16384969_SNP [dm3] 3L_16391869_SNP [dm6]	A	G	2.733e^-4	0.709	UPSTREAM CG44836 INTRON CG44836
3R	5802792	3R_5802792_SNP [dm3] 3R_9977070_SNP [dm6]	G	T	2.735e^-4	0.709	INTRON Glut4EF
X	11628132	X_11628132_SNP [dm3] X_11734099_SNP [dm6]	G	T	2.735e^-4	0.709	UPSTREAM inaF-A INTRON CG15221
3L	10617978	3L_10617978_SNP [dm3] 3L_10624878_SNP [dm6]	C	T	2.737e^-4	0.709	SYNONYMOUS_CODING CG43127 UTR_3_PRIME CG43127
2R	15033953	2R_15033953_SNP [dm3] 2R_19146448_SNP [dm6]	T	G	2.738e^-4	0.709	INTRON ena	TF binding site mE1_TFBS_inv
3R	21402945	3R_21402945_SNP [dm3] 3R_25577223_SNP [dm6]	G	A	2.747e^-4	0.709	INTRON msi
3L	12317056	3L_12317056_SNP [dm3] 3L_12323956_SNP [dm6]	T	C	2.750e^-4	0.709	INTERGENIC
3R	5002527	3R_5002527_SNP [dm3] 3R_9176805_SNP [dm6]	A	T	2.754e^-4	0.709	UPSTREAM CG11997 INTRON pum
3R	20237776	3R_20237776_SNP [dm3] 3R_24412054_SNP [dm6]	T	C	2.756e^-4	0.709	INTRON nAChRalpha1
2L	9445497	2L_9445497_SNP [dm3] 2L_9445497_SNP [dm6]	C	T	2.759e^-4	0.709	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12873991	2R_12873991_SNP [dm3] 2R_16986486_SNP [dm6]	A	G	2.765e^-4	0.709	INTRON Cbp53E
X	18332438	X_18332438_SNP [dm3] X_18438405_SNP [dm6]	G	A	2.766e^-4	0.709	UPSTREAM CG32551 DOWNSTREAM CG6290 INTRON CG32548
3L	12507289	3L_12507289_DEL [dm3] 3L_12514189_DEL [dm6]	GG	G	2.776e^-4	0.709	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17395310	2L_17395310_SNP [dm3] 2L_17395310_SNP [dm6]	G	A	2.782e^-4	0.709	INTRON CLIP-190
2L	21003001	2L_21003001_SNP [dm3] 2L_21003001_SNP [dm6]	A	T	2.784e^-4	0.709	INTRON CG42238
2R	10914224	2R_10914224_DEL [dm3] 2R_15026719_DEL [dm6]	GAAG	G	2.786e^-4	0.709	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16772499	2R_16772499_SNP [dm3] 2R_20884994_SNP [dm6]	T	C	2.786e^-4	0.709	INTRON otp	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	23990361	3R_23990361_SNP [dm3] 3R_28164639_SNP [dm6]	G	A	2.789e^-4	0.709	INTRON CG34354
X	8616923	X_8616923_SNP [dm3] X_8722890_SNP [dm6]	A	G	2.796e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23382467	3R_23382467_SNP [dm3] 3R_27556745_SNP [dm6]	T	G	2.800e^-4	0.709	INTRON Klp98A	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	24137856	3L_24137856_SNP [dm3] 3L_24144756_SNP [dm6]	T	A	2.800e^-4	0.709	INTRON Snap25
2R	5317377	2R_5317377_SNP [dm3] 2R_9429872_SNP [dm6]	G	A	2.802e^-4	0.709	INTRON Pdk
X	11628115	X_11628115_SNP [dm3] X_11734082_SNP [dm6]	G	T	2.806e^-4	0.709	UPSTREAM inaF-A INTRON CG15221
2L	17563702	2L_17563702_SNP [dm3] 2L_17563702_SNP [dm6]	G	A	2.814e^-4	0.709	INTERGENIC
X	14237461	X_14237461_SNP [dm3] X_14343428_SNP [dm6]	G	A	2.820e^-4	0.709	INTRON dpr8
3R	12566331	3R_12566331_SNP [dm3] 3R_16740609_SNP [dm6]	C	T	2.827e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2L	20962130	2L_20962130_SNP [dm3] 2L_20962130_SNP [dm6]	C	T	2.827e^-4	0.709	INTERGENIC
2R	7949795	2R_7949795_SNP [dm3] 2R_12062290_SNP [dm6]	C	G	2.827e^-4	0.709	UTR_3_PRIME Drep-3
3L	18316739	3L_18316739_SNP [dm3] 3L_18323639_SNP [dm6]	G	C	2.832e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16054881	2L_16054881_SNP [dm3] 2L_16054881_SNP [dm6]	G	A	2.834e^-4	0.709	INTRON beat-Ia
2R	7576569	2R_7576569_SNP [dm3] 2R_11689064_SNP [dm6]	A	C	2.835e^-4	0.709	UTR_3_PRIME wal DOWNSTREAM Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	5220074	2R_5220074_SNP [dm3] 2R_9332569_SNP [dm6]	G	A	2.842e^-4	0.709	INTRON CG13954 & 1 other
3R	18478409	3R_18478409_SNP [dm3] 3R_22652687_SNP [dm6]	C	A	2.846e^-4	0.709	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2L	5160017	2L_5160017_SNP [dm3] 2L_5160017_SNP [dm6]	G	T	2.852e^-4	0.709	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	20592395	2R_20592395_SNP [dm3] 2R_24704872_SNP [dm6]	T	C	2.856e^-4	0.709	INTRON Mid1
3L	8029662	3L_8029662_SNP [dm3] 3L_8036562_SNP [dm6]	A	G	2.858e^-4	0.709	INTRON nmo	TF binding site BDTNP1_TFBS_twi
2L	20046298	2L_20046298_DEL [dm3] 2L_20046298_DEL [dm6]	ATAGATTTCGC...	A	2.859e^-4	0.709	INTRON sNPF
2R	9884474	2R_9884474_SNP [dm3] 2R_13996969_SNP [dm6]	C	T	2.865e^-4	0.709	INTRON mam	TF binding site BDTNP1_TFBS_twi
3R	12566314	3R_12566314_SNP [dm3] 3R_16740592_SNP [dm6]	A	G	2.865e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2R	14570239	2R_14570239_SNP [dm3] 2R_18682734_SNP [dm6]	A	G	2.866e^-4	0.709	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435
2R	10174821	2R_10174821_SNP [dm3] 2R_14287316_SNP [dm6]	C	T	2.871e^-4	0.709	SYNONYMOUS_CODING Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	9464441	2L_9464441_SNP [dm3] 2L_9464441_SNP [dm6]	G	T	2.873e^-4	0.709	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
3R	4884421	3R_4884421_SNP [dm3] 3R_9058699_SNP [dm6]	C	T	2.877e^-4	0.709	SYNONYMOUS_CODING Kdm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	18085264	3L_18085264_DEL [dm3] 3L_18092164_DEL [dm6]	AGGTATATGTTT...	A	2.886e^-4	0.709	INTRON CG13698
3L	18085279	3L_18085279_DEL [dm3] 3L_18092179_DEL [dm6]	GTTTTCCTAACT...	A	2.886e^-4	0.709	INTRON CG13698
3L	14710840	3L_14710840_SNP [dm3] 3L_14717740_SNP [dm6]	T	A	2.888e^-4	0.709	INTRON ome
2L	17395527	2L_17395527_SNP [dm3] 2L_17395527_SNP [dm6]	A	T	2.892e^-4	0.709	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
3R	5800621	3R_5800621_SNP [dm3] 3R_9974899_SNP [dm6]	G	C	2.892e^-4	0.709	INTRON Glut4EF
2L	10453867	2L_10453867_SNP [dm3] 2L_10453867_SNP [dm6]	T	C	2.901e^-4	0.709	NON_SYNONYMOUS_CODING CG5322
3L	19016959	3L_19016959_SNP [dm3] 3L_19023859_SNP [dm6]	G	A	2.902e^-4	0.709	INTRON nkd
3L	12572640	3L_12572640_SNP [dm3] 3L_12579540_SNP [dm6]	C	T	2.904e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21283475	X_21283475_SNP [dm3] X_21412448_SNP [dm6]	A	C	2.909e^-4	0.709	INTERGENIC
2R	20959972	2R_20959972_SNP [dm3] 2R_25072449_SNP [dm6]	A	C	2.911e^-4	0.709	DOWNSTREAM gol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14225430	3L_14225430_DEL [dm3] 3L_14232330_DEL [dm6]	AGA	A	2.918e^-4	0.709	UTR_3_PRIME nuf	TF binding site mE1_TFBS_bab1
3L	12237551	3L_12237551_SNP [dm3] 3L_12244451_SNP [dm6]	C	T	2.923e^-4	0.709	INTRON app
3R	8665273	3R_8665273_SNP [dm3] 3R_12839551_SNP [dm6]	G	A	2.924e^-4	0.709	INTERGENIC
2R	5317766	2R_5317766_SNP [dm3] 2R_9430261_SNP [dm6]	A	T	2.925e^-4	0.709	INTRON Pdk
2R	16099923	2R_16099923_SNP [dm3] 2R_20212418_SNP [dm6]	T	C	2.932e^-4	0.709	SYNONYMOUS_CODING CG16894
3L	7537987	3L_7537987_SNP [dm3] 3L_7544887_SNP [dm6]	A	T	2.933e^-4	0.709	INTERGENIC
2L	15733661	2L_15733661_SNP [dm3] 2L_15733661_SNP [dm6]	G	T	2.939e^-4	0.709	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10511999	2R_10511999_SNP [dm3] 2R_14624494_SNP [dm6]	G	A	2.947e^-4	0.709	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2208728	3L_2208728_SNP [dm3] 3L_2208728_SNP [dm6]	G	A	2.953e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18085344	3L_18085344_SNP [dm3] 3L_18092244_SNP [dm6]	A	T	2.955e^-4	0.709	INTRON CG13698
2R	18327513	2R_18327513_SNP [dm3] 2R_22440008_SNP [dm6]	C	A	2.955e^-4	0.709	INTERGENIC
3L	10947495	3L_10947495_SNP [dm3] 3L_10954395_SNP [dm6]	A	G	2.956e^-4	0.709	INTERGENIC
2L	9465355	2L_9465355_SNP [dm3] 2L_9465355_SNP [dm6]	A	C	2.970e^-4	0.709	INTERGENIC
3R	22584441	3R_22584441_SNP [dm3] 3R_26758719_SNP [dm6]	C	T	2.979e^-4	0.709	UPSTREAM CR45562 INTERGENIC
2L	11489423	2L_11489423_SNP [dm3] 2L_11489423_SNP [dm6]	A	C	2.982e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5214618	2R_5214618_SNP [dm3] 2R_9327113_SNP [dm6]	A	C	2.987e^-4	0.709	INTRON CG13954 & 1 other
3L	13870225	3L_13870225_SNP [dm3] 3L_13877125_SNP [dm6]	G	A	2.989e^-4	0.709	INTRON dysc
2R	16654237	2R_16654237_SNP [dm3] 2R_20766732_SNP [dm6]	T	G	2.992e^-4	0.709	EXON CR44665
2R	14340014	2R_14340014_SNP [dm3] 2R_18452509_SNP [dm6]	G	C	2.993e^-4	0.709	SYNONYMOUS_CODING CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6318144	2L_6318144_SNP [dm3] 2L_6318144_SNP [dm6]	G	T	2.998e^-4	0.709	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10920927	2R_10920927_SNP [dm3] 2R_15033422_SNP [dm6]	A	G	3.012e^-4	0.709	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9461571	2L_9461571_SNP [dm3] 2L_9461571_SNP [dm6]	A	G	3.015e^-4	0.709	NON_SYNONYMOUS_CODING numb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16427750	3R_16427750_SNP [dm3] 3R_20602028_SNP [dm6]	G	A	3.016e^-4	0.709	INTRON bon	transposable element FlyBase
X	9112249	X_9112249_SNP [dm3] X_9218216_SNP [dm6]	A	T	3.018e^-4	0.709	UTR_3_PRIME t DOWNSTREAM CG15369
3L	2325782	3L_2325782_SNP [dm3] 3L_2325782_SNP [dm6]	A	C	3.019e^-4	0.709	INTRON MsR1
2L	11489515	2L_11489515_SNP [dm3] 2L_11489515_SNP [dm6]	A	G	3.019e^-4	0.709	INTERGENIC
3L	13994032	3L_13994032_SNP [dm3] 3L_14000932_SNP [dm6]	T	C	3.022e^-4	0.709	SYNONYMOUS_CODING CG8783	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16326348	2R_16326348_SNP [dm3] 2R_20438843_SNP [dm6]	A	T	3.029e^-4	0.709	INTRON CG12484
3R	13970284	3R_13970284_SNP [dm3] 3R_18144562_SNP [dm6]	A	C	3.029e^-4	0.709	INTERGENIC
3L	18150792	3L_18150792_SNP [dm3] 3L_18157692_SNP [dm6]	A	C	3.031e^-4	0.709	INTRON CG13699
3R	16388690	3R_16388690_SNP [dm3] 3R_20562968_SNP [dm6]	T	C	3.031e^-4	0.709	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7318960	X_7318960_SNP [dm3] X_7424927_SNP [dm6]	G	A	3.035e^-4	0.709	UPSTREAM CG15036 DOWNSTREAM CG32726 INTERGENIC
2R	5419152	2R_5419152_SNP [dm3] 2R_9531647_SNP [dm6]	A	T	3.037e^-4	0.709	INTRON brp
2L	21003045	2L_21003045_SNP [dm3] 2L_21003045_SNP [dm6]	A	T	3.039e^-4	0.709	INTRON CG42238
2L	11305367	2L_11305367_SNP [dm3] 2L_11305367_SNP [dm6]	G	A	3.039e^-4	0.709	INTERGENIC
3R	11596080	3R_11596080_SNP [dm3] 3R_15770358_SNP [dm6]	A	T	3.040e^-4	0.709	INTERGENIC
2L	19283094	2L_19283094_SNP [dm3] 2L_19283094_SNP [dm6]	T	A	3.041e^-4	0.709	INTERGENIC
3R	11187488	3R_11187488_SNP [dm3] 3R_15361766_SNP [dm6]	A	T	3.042e^-4	0.709	UTR_5_PRIME Trax UPSTREAM ldlCp	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19079970	2R_19079970_SNP [dm3] 2R_23192447_SNP [dm6]	A	G	3.044e^-4	0.709	INTRON CG34371	TF binding site mE1_TFBS_cad
2R	17843154	2R_17843154_SNP [dm3] 2R_21955649_SNP [dm6]	G	A	3.045e^-4	0.709	UPSTREAM CG13494 INTERGENIC
2L	20498672	2L_20498672_SNP [dm3] 2L_20498672_SNP [dm6]	G	C	3.047e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3531788	X_3531788_DEL [dm3] X_3637755_DEL [dm6]	ATTGTA	A	3.049e^-4	0.709	INTRON AstA-R1
2R	17595657	2R_17595657_SNP [dm3] 2R_21708152_SNP [dm6]	C	A	3.053e^-4	0.709	UPSTREAM HmgZ DOWNSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16769638	2R_16769638_SNP [dm3] 2R_20882133_SNP [dm6]	C	T	3.056e^-4	0.709	INTRON Cib2	TF binding site mE1_TFBS_inv
2R	18957718	2R_18957718_SNP [dm3] 2R_23070195_SNP [dm6]	C	T	3.057e^-4	0.709	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21241687	3R_21241687_SNP [dm3] 3R_25415965_SNP [dm6]	G	T	3.059e^-4	0.709	INTRON Fur1
3R	15262157	3R_15262157_SNP [dm3] 3R_19436435_SNP [dm6]	A	G	3.060e^-4	0.709	INTRON CG31221
2R	16650844	2R_16650844_SNP [dm3] 2R_20763339_SNP [dm6]	T	A	3.062e^-4	0.709	INTERGENIC
3L	9424352	3L_9424352_SNP [dm3] 3L_9431252_SNP [dm6]	G	T	3.063e^-4	0.709	NON_SYNONYMOUS_CODING MTF-1 START_GAINED MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17315128	2R_17315128_DEL [dm3] 2R_21427623_DEL [dm6]	TT	T	3.066e^-4	0.709	INTRON Sdc
3L	13871251	3L_13871251_SNP [dm3] 3L_13878151_SNP [dm6]	G	T	3.069e^-4	0.709	UPSTREAM CG13737 INTRON dysc
2L	2713788	2L_2713788_SNP [dm3] 2L_2713788_SNP [dm6]	C	T	3.072e^-4	0.709	INTRON CG31690
2R	18626712	2R_18626712_SNP [dm3] 2R_22739207_SNP [dm6]	A	C	3.079e^-4	0.709	INTRON jbug
3L	18478116	3L_18478116_SNP [dm3] 3L_18485016_SNP [dm6]	G	A	3.083e^-4	0.709	DOWNSTREAM AstC-R2 INTERGENIC	TF binding site mE1_TFBS_kn
2R	13093069	2R_13093069_SNP [dm3] 2R_17205564_SNP [dm6]	A	T	3.083e^-4	0.709	NON_SYNONYMOUS_CODING CG43237
2R	11081354	2R_11081354_SNP [dm3] 2R_15193849_SNP [dm6]	T	C	3.085e^-4	0.709	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	14099940	3L_14099940_SNP [dm3] 3L_14106840_SNP [dm6]	C	T	3.087e^-4	0.709	NON_SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19544934	2R_19544934_SNP [dm3] 2R_23657411_SNP [dm6]	C	T	3.096e^-4	0.709	UPSTREAM Pde8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21188385	3R_21188385_SNP [dm3] 3R_25362663_SNP [dm6]	C	T	3.107e^-4	0.709	INTRON Fur1
2L	17225435	2L_17225435_SNP [dm3] 2L_17225435_SNP [dm6]	A	G	3.111e^-4	0.709	INTRON beat-IIIc
2R	18974812	2R_18974812_SNP [dm3] 2R_23087289_SNP [dm6]	A	T	3.113e^-4	0.709	NON_SYNONYMOUS_CODING CG13538
3R	10974279	3R_10974279_SNP [dm3] 3R_15148557_SNP [dm6]	C	T	3.117e^-4	0.709	INTERGENIC
X	14232609	X_14232609_SNP [dm3] X_14338576_SNP [dm6]	A	C	3.120e^-4	0.709	INTRON dpr8
2R	19265303	2R_19265303_SNP [dm3] 2R_23377780_SNP [dm6]	C	G	3.126e^-4	0.709	UPSTREAM Golgin245 & 1 other DOWNSTREAM CG13551 INTERGENIC
2R	18395134	2R_18395134_SNP [dm3] 2R_22507629_SNP [dm6]	G	A	3.129e^-4	0.709	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	8162788	2R_8162788_DEL [dm3] 2R_12275283_DEL [dm6]	ATTA	A	3.134e^-4	0.709	UTR_3_PRIME Cam DOWNSTREAM Cam
3L	21987555	3L_21987555_SNP [dm3] 3L_21994455_SNP [dm6]	A	G	3.139e^-4	0.709	INTERGENIC
3R	10059225	3R_10059225_SNP [dm3] 3R_14233503_SNP [dm6]	A	C	3.153e^-4	0.709	INTERGENIC
3L	2392304	3L_2392304_SNP [dm3] 3L_2392304_SNP [dm6]	A	G	3.170e^-4	0.709	INTRON CG45186
3R	24730495	3R_24730495_SNP [dm3] 3R_28904773_SNP [dm6]	A	T	3.172e^-4	0.709	INTRON Doa
3R	11187389	3R_11187389_SNP [dm3] 3R_15361667_SNP [dm6]	C	T	3.172e^-4	0.709	UPSTREAM Trax & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11583117	3R_11583117_INS [dm3] 3R_15757395_INS [dm6]	T	TGCCAACTT	3.175e^-4	0.709	INTERGENIC
3R	3196137	3R_3196137_SNP [dm3] 3R_7370415_SNP [dm6]	C	A	3.177e^-4	0.709	INTERGENIC
2R	17843111	2R_17843111_SNP [dm3] 2R_21955606_SNP [dm6]	A	C	3.179e^-4	0.709	UPSTREAM CG13494 INTERGENIC
2R	17843136	2R_17843136_SNP [dm3] 2R_21955631_SNP [dm6]	C	T	3.179e^-4	0.709	UPSTREAM CG13494 INTERGENIC
2R	17843163	2R_17843163_SNP [dm3] 2R_21955658_SNP [dm6]	G	T	3.179e^-4	0.709	UPSTREAM CG13494 INTERGENIC
2L	8470198	2L_8470198_SNP [dm3] 2L_8470198_SNP [dm6]	A	G	3.180e^-4	0.709	INTRON d	TF binding site mE1_TFBS_chinmo
2R	9147240	2R_9147240_SNP [dm3] 2R_13259735_SNP [dm6]	G	T	3.182e^-4	0.709	UPSTREAM CG42319 INTERGENIC
2L	18500843	2L_18500843_SNP [dm3] 2L_18500843_SNP [dm6]	G	A	3.184e^-4	0.709	UTR_5_PRIME kon	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17913386	2R_17913386_SNP [dm3] 2R_22025881_SNP [dm6]	G	A	3.187e^-4	0.709	INTRON CG34370
3R	15262511	3R_15262511_SNP [dm3] 3R_19436789_SNP [dm6]	A	C	3.187e^-4	0.709	INTRON CG31221
2R	15033712	2R_15033712_SNP [dm3] 2R_19146207_SNP [dm6]	C	T	3.187e^-4	0.709	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20274006	X_20274006_SNP [dm3] X_20402979_SNP [dm6]	C	T	3.188e^-4	0.709	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo
2L	19232914	2L_19232914_SNP [dm3] 2L_19232914_SNP [dm6]	G	C	3.191e^-4	0.709	INTERGENIC
2R	9056728	2R_9056728_SNP [dm3] 2R_13169223_SNP [dm6]	C	T	3.192e^-4	0.709	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17175703	2R_17175703_SNP [dm3] 2R_21288198_SNP [dm6]	G	A	3.198e^-4	0.709	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17232532	2R_17232532_SNP [dm3] 2R_21345027_SNP [dm6]	G	A	3.203e^-4	0.709	NON_SYNONYMOUS_CODING CG15666
3L	2364691	3L_2364691_SNP [dm3] 3L_2364691_SNP [dm6]	A	G	3.214e^-4	0.709	INTERGENIC
2L	11858673	2L_11858673_SNP [dm3] 2L_11858673_SNP [dm6]	A	C	3.235e^-4	0.709	INTRON Pde1c
X	17907980	X_17907980_INS [dm3] X_18013947_INS [dm6]	C	CC	3.241e^-4	0.709	INTRON Sh
2L	11305497	2L_11305497_SNP [dm3] 2L_11305497_SNP [dm6]	G	C	3.243e^-4	0.709	INTERGENIC
2R	17843141	2R_17843141_SNP [dm3] 2R_21955636_SNP [dm6]	A	T	3.244e^-4	0.709	UPSTREAM CG13494 INTERGENIC
2R	4864789	2R_4864789_SNP [dm3] 2R_8977284_SNP [dm6]	A	C	3.249e^-4	0.709	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18560143	3R_18560143_SNP [dm3] 3R_22734421_SNP [dm6]	A	G	3.249e^-4	0.709	SYNONYMOUS_CODING Dcr-1 UPSTREAM Takl2	TF binding site mE1_TFBS_cad
X	14134137	X_14134137_SNP [dm3] X_14240104_SNP [dm6]	A	G	3.249e^-4	0.709	UTR_3_PRIME CG1434 DOWNSTREAM mRNA-cap
2R	9056675	2R_9056675_SNP [dm3] 2R_13169170_SNP [dm6]	C	A	3.250e^-4	0.709	NON_SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6334672	X_6334672_DEL [dm3] X_6440639_DEL [dm6]	TT	T	3.253e^-4	0.709	INTRON CG42340
X	16834961	X_16834961_SNP [dm3] X_16940928_SNP [dm6]	T	C	3.264e^-4	0.709	UPSTREAM wus DOWNSTREAM CG13001 INTERGENIC
3R	3097232	3R_3097232_SNP [dm3] 3R_7271510_SNP [dm6]	C	T	3.265e^-4	0.709	UPSTREAM CG10032 DOWNSTREAM Syt4 INTERGENIC
3L	8875111	3L_8875111_SNP [dm3] 3L_8882011_SNP [dm6]	A	C	3.265e^-4	0.709	INTRON dally
2R	9151059	2R_9151059_SNP [dm3] 2R_13263554_SNP [dm6]	T	C	3.274e^-4	0.709	SYNONYMOUS_CODING CG42319 INTRON CG42319
2R	15729951	2R_15729951_INS [dm3] 2R_19842446_INS [dm6]	T	TG	3.279e^-4	0.709	DOWNSTREAM CG44569 INTERGENIC
3L	5057113	3L_5057113_SNP [dm3] 3L_5057113_SNP [dm6]	G	A	3.280e^-4	0.709	INTRON Con
2R	9057674	2R_9057674_SNP [dm3] 2R_13170169_SNP [dm6]	G	C	3.281e^-4	0.709	NON_SYNONYMOUS_CODING Spt-I EXON CR45142
3L	10873408	3L_10873408_SNP [dm3] 3L_10880308_SNP [dm6]	A	T	3.291e^-4	0.709	DOWNSTREAM CG6409 & 1 other INTERGENIC
2R	15151069	2R_15151069_SNP [dm3] 2R_19263564_SNP [dm6]	A	T	3.292e^-4	0.709	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8704267	2L_8704267_SNP [dm3] 2L_8704267_SNP [dm6]	A	G	3.297e^-4	0.709	INTRON Hnf4 EXON CR44992
3L	18975276	3L_18975276_SNP [dm3] 3L_18982176_SNP [dm6]	T	C	3.304e^-4	0.709	INTERGENIC
3R	12748044	3R_12748044_SNP [dm3] 3R_16922322_SNP [dm6]	T	C	3.307e^-4	0.709	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2434298	3L_2434298_SNP [dm3] 3L_2434298_SNP [dm6]	A	G	3.314e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19155792	2R_19155792_DEL [dm3] 2R_23268269_DEL [dm6]	TT	T	3.315e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13093826	2L_13093826_SNP [dm3] 2L_13093826_SNP [dm6]	G	C	3.321e^-4	0.709	INTERGENIC
2L	11299336	2L_11299336_SNP [dm3] 2L_11299336_SNP [dm6]	C	T	3.321e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2466576	3L_2466576_SNP [dm3] 3L_2466576_SNP [dm6]	C	T	3.323e^-4	0.709	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6972279	3R_6972279_SNP [dm3] 3R_11146557_SNP [dm6]	T	A	3.323e^-4	0.709	INTERGENIC
2R	19902800	2R_19902800_DEL [dm3] 2R_24015277_DEL [dm6]	TGGATT	T	3.329e^-4	0.709	INTRON CG4324	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9460876	2L_9460876_SNP [dm3] 2L_9460876_SNP [dm6]	C	A	3.329e^-4	0.709	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4048892	2L_4048892_SNP [dm3] 2L_4048892_SNP [dm6]	T	A	3.329e^-4	0.709	INTRON ed
X	17923383	X_17923383_SNP [dm3] X_18029350_SNP [dm6]	T	C	3.332e^-4	0.709	INTRON Sh
3L	18205263	3L_18205263_SNP [dm3] 3L_18212163_SNP [dm6]	C	T	3.334e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14649961	3R_14649961_SNP [dm3] 3R_18824239_SNP [dm6]	C	T	3.334e^-4	0.709	INTRON CG18208
3L	2471238	3L_2471238_SNP [dm3] 3L_2471238_SNP [dm6]	T	A	3.335e^-4	0.709	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	402373	3L_402373_SNP [dm3] 3L_402373_SNP [dm6]	A	T	3.335e^-4	0.709	INTERGENIC
X	3532404	X_3532404_SNP [dm3] X_3638371_SNP [dm6]	A	C	3.343e^-4	0.709	INTRON AstA-R1
2L	4863409	2L_4863409_SNP [dm3] 2L_4863409_SNP [dm6]	G	A	3.345e^-4	0.709	INTRON pog
2R	18638378	2R_18638378_SNP [dm3] 2R_22750873_SNP [dm6]	G	A	3.346e^-4	0.709	INTRON CG42260	TF binding site mE1_TFBS_inv
2L	11235482	2L_11235482_SNP [dm3] 2L_11235482_SNP [dm6]	G	A	3.350e^-4	0.709	UTR_5_PRIME ab DOWNSTREAM snoRNA:Me18S-G642
2R	16606065	2R_16606065_SNP [dm3] 2R_20718560_SNP [dm6]	C	A	3.362e^-4	0.71	INTRON dpr
2R	3835203	2R_3835203_SNP [dm3] 2R_7947698_SNP [dm6]	C	A	3.366e^-4	0.71	NON_SYNONYMOUS_CODING CG14764 DOWNSTREAM CG34431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18402917	2L_18402917_SNP [dm3] 2L_18402917_SNP [dm6]	C	A	3.366e^-4	0.71	INTERGENIC
2R	6873529	2R_6873529_SNP [dm3] 2R_10986024_SNP [dm6]	C	T	3.372e^-4	0.71	INTRON luna
2R	14060667	2R_14060667_SNP [dm3] 2R_18173162_SNP [dm6]	A	G	3.375e^-4	0.71	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
2L	3791152	2L_3791152_SNP [dm3] 2L_3791152_SNP [dm6]	C	T	3.384e^-4	0.71	SPLICE_SITE_REGION CG3921 INTRON CG3921
2L	14079154	2L_14079154_SNP [dm3] 2L_14079154_SNP [dm6]	A	G	3.386e^-4	0.71	INTRON nAChRalpha5
3L	3749255	3L_3749255_MNP [dm3] 3L_3749255_MNP [dm6]	AAAA	TCGG	3.388e^-4	0.71	INTRON CG32264
2R	16173632	2R_16173632_SNP [dm3] 2R_20286127_SNP [dm6]	T	C	3.389e^-4	0.71	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3L	995863	3L_995863_SNP [dm3] 3L_995863_SNP [dm6]	G	T	3.392e^-4	0.71	DOWNSTREAM trio & 1 other INTERGENIC
X	8619797	X_8619797_SNP [dm3] X_8725764_SNP [dm6]	C	T	3.406e^-4	0.712	EXON CR43297
3R	14210174	3R_14210174_SNP [dm3] 3R_18384452_SNP [dm6]	G	T	3.421e^-4	0.712	SYNONYMOUS_CODING CG14309
2R	10917107	2R_10917107_DEL [dm3] 2R_15029602_DEL [dm6]	ATGTTGATAGCGTCGACTAA...	A	3.421e^-4	0.712	INTRON hbs	TF binding site mE1_TFBS_cad
2L	9445837	2L_9445837_SNP [dm3] 2L_9445837_SNP [dm6]	A	C	3.426e^-4	0.712	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	4928643	3R_4928643_SNP [dm3] 3R_9102921_SNP [dm6]	T	G	3.431e^-4	0.712	INTRON pum
2R	19148105	2R_19148105_SNP [dm3] 2R_23260582_SNP [dm6]	T	G	3.434e^-4	0.712	INTERGENIC
3L	6899804	3L_6899804_SNP [dm3] 3L_6906704_SNP [dm6]	A	G	3.436e^-4	0.712	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21945420	3L_21945420_SNP [dm3] 3L_21952320_SNP [dm6]	A	G	3.440e^-4	0.712	DOWNSTREAM CG7448 INTERGENIC
3L	12572638	3L_12572638_SNP [dm3] 3L_12579538_SNP [dm6]	T	C	3.446e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13798050	2R_13798050_SNP [dm3] 2R_17910545_SNP [dm6]	G	A	3.452e^-4	0.712	INTRON Elk
2L	20046335	2L_20046335_SNP [dm3] 2L_20046335_SNP [dm6]	G	T	3.454e^-4	0.712	INTRON sNPF
2R	10171220	2R_10171220_SNP [dm3] 2R_14283715_SNP [dm6]	A	G	3.454e^-4	0.712	INTRON Ih
3L	4036572	3L_4036572_SNP [dm3] 3L_4036572_SNP [dm6]	T	A	3.457e^-4	0.712	DOWNSTREAM Gr64d & 2 others INTRON Gr64f
2R	2803110	2R_2803110_SNP [dm3] 2R_6915605_SNP [dm6]	A	C	3.458e^-4	0.712	INTRON CG30158
X	17923339	X_17923339_SNP [dm3] X_18029306_SNP [dm6]	A	T	3.470e^-4	0.712	INTRON Sh
3R	20237610	3R_20237610_SNP [dm3] 3R_24411888_SNP [dm6]	C	T	3.471e^-4	0.712	INTRON nAChRalpha1
3L	15987954	3L_15987954_SNP [dm3] 3L_15994854_SNP [dm6]	T	C	3.476e^-4	0.712	SYNONYMOUS_CODING CG5830
X	9093132	X_9093132_SNP [dm3] X_9199099_SNP [dm6]	A	G	3.485e^-4	0.712	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14429863	3R_14429863_SNP [dm3] 3R_18604141_SNP [dm6]	G	T	3.486e^-4	0.712	INTRON qin & 1 other
3L	23206867	3L_23206867_SNP [dm3] 3L_23213767_SNP [dm6]	G	A	3.489e^-4	0.712	INTRON nAChRalpha4
2R	21059022	2R_21059022_SNP [dm3] 2R_25171499_SNP [dm6]	T	G	3.491e^-4	0.712	DOWNSTREAM Sfp60F INTERGENIC
3L	7132084	3L_7132084_SNP [dm3] 3L_7138984_SNP [dm6]	G	A	3.508e^-4	0.712	INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9670527	3L_9670527_SNP [dm3] 3L_9677427_SNP [dm6]	G	A	3.513e^-4	0.712	INTRON fry	TF binding site BDTNP1_TFBS_dl
X	16835003	X_16835003_INS [dm3] X_16940970_INS [dm6]	A	AAAAATGTA	3.517e^-4	0.712	UPSTREAM wus DOWNSTREAM CG13001 INTERGENIC
2R	20933160	2R_20933160_SNP [dm3] 2R_25045637_SNP [dm6]	A	T	3.519e^-4	0.712	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14227966	3L_14227966_DEL [dm3] 3L_14234866_DEL [dm6]	AAGTGT	A	3.530e^-4	0.712	DOWNSTREAM CG34244 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14167488	2R_14167488_SNP [dm3] 2R_18279983_SNP [dm6]	C	G	3.531e^-4	0.712	UTR_3_PRIME sbb	TF binding site mE1_TFBS_cad
2R	17344842	2R_17344842_SNP [dm3] 2R_21457337_SNP [dm6]	G	A	3.532e^-4	0.712	INTRON Sdc
3R	9305412	3R_9305412_SNP [dm3] 3R_13479690_SNP [dm6]	C	T	3.534e^-4	0.712	DOWNSTREAM CR45589 INTERGENIC
3L	4036574	3L_4036574_DEL [dm3] 3L_4036574_DEL [dm6]	CC	C	3.536e^-4	0.712	DOWNSTREAM Gr64d & 2 others INTRON Gr64f
3L	9283673	3L_9283673_SNP [dm3] 3L_9290573_SNP [dm6]	G	C	3.539e^-4	0.712	INTERGENIC
2R	17804031	2R_17804031_SNP [dm3] 2R_21916526_SNP [dm6]	C	G	3.545e^-4	0.712	INTRON Fili
3L	563443	3L_563443_SNP [dm3] 3L_563443_SNP [dm6]	T	C	3.547e^-4	0.712	INTRON hipk
2R	12992913	2R_12992913_SNP [dm3] 2R_17105408_SNP [dm6]	G	T	3.549e^-4	0.712	INTRON CG30456
3R	15763320	3R_15763320_SNP [dm3] 3R_19937598_SNP [dm6]	A	G	3.553e^-4	0.712	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
3L	5603539	3L_5603539_DEL [dm3] 3L_5610439_DEL [dm6]	CA	C	3.554e^-4	0.712	INTERGENIC
2R	19583154	2R_19583154_SNP [dm3] 2R_23695631_SNP [dm6]	T	G	3.557e^-4	0.712	SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16768771	2R_16768771_SNP [dm3] 2R_20881266_SNP [dm6]	C	A	3.561e^-4	0.712	INTRON Cib2	TF binding site mE1_TFBS_inv
2L	9460935	2L_9460935_SNP [dm3] 2L_9460935_SNP [dm6]	T	C	3.562e^-4	0.712	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15205607	2R_15205607_SNP [dm3] 2R_19318102_SNP [dm6]	A	G	3.566e^-4	0.712	SYNONYMOUS_CODING Rgk1
2R	13976630	2R_13976630_SNP [dm3] 2R_18089125_SNP [dm6]	G	T	3.568e^-4	0.712	INTRON CG34386
2L	15555321	2L_15555321_SNP [dm3] 2L_15555321_SNP [dm6]	G	A	3.572e^-4	0.712	INTRON kek3
3L	8139448	3L_8139448_SNP [dm3] 3L_8146348_SNP [dm6]	C	T	3.572e^-4	0.712	INTRON CG13676
3L	1269381	3L_1269381_SNP [dm3] 3L_1269381_SNP [dm6]	G	A	3.590e^-4	0.712	INTRON CG9134
2R	12530033	2R_12530033_SNP [dm3] 2R_16642528_SNP [dm6]	T	G	3.591e^-4	0.712	INTRON gprs
2L	21057314	2L_21057314_SNP [dm3] 2L_21057314_SNP [dm6]	G	A	3.594e^-4	0.712	UTR_3_PRIME Itgbetanu DOWNSTREAM CG9265	transposable element FlyBase
2L	6523962	2L_6523962_SNP [dm3] 2L_6523962_SNP [dm6]	A	G	3.599e^-4	0.712	INTRON CG31637
3L	1445911	3L_1445911_SNP [dm3] 3L_1445911_SNP [dm6]	C	A	3.609e^-4	0.712	INTRON Ptp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22150791	3R_22150791_SNP [dm3] 3R_26325069_SNP [dm6]	A	G	3.611e^-4	0.712	INTRON CG33970 EXON CR42765
2R	16647594	2R_16647594_SNP [dm3] 2R_20760089_SNP [dm6]	G	T	3.611e^-4	0.712	INTERGENIC
3L	11452752	3L_11452752_SNP [dm3] 3L_11459652_SNP [dm6]	A	T	3.612e^-4	0.712	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_inv
2L	2626343	2L_2626343_SNP [dm3] 2L_2626343_SNP [dm6]	T	G	3.617e^-4	0.712	EXON CR45705
2R	17929909	2R_17929909_SNP [dm3] 2R_22042404_SNP [dm6]	C	A	3.620e^-4	0.712	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2L	9392523	2L_9392523_SNP [dm3] 2L_9392523_SNP [dm6]	T	C	3.625e^-4	0.712	DOWNSTREAM Aldh INTRON Shawl
2R	15569186	2R_15569186_SNP [dm3] 2R_19681681_SNP [dm6]	A	T	3.626e^-4	0.712	UPSTREAM CG15127 DOWNSTREAM CG34198 INTERGENIC
3L	6830711	3L_6830711_SNP [dm3] 3L_6837611_SNP [dm6]	G	A	3.637e^-4	0.712	INTERGENIC
3R	5798597	3R_5798597_SNP [dm3] 3R_9972875_SNP [dm6]	T	A	3.644e^-4	0.712	INTRON Glut4EF
3L	5058711	3L_5058711_SNP [dm3] 3L_5058711_SNP [dm6]	T	A	3.645e^-4	0.712	INTRON Con
3R	3148898	3R_3148898_SNP [dm3] 3R_7323176_SNP [dm6]	T	A	3.649e^-4	0.712	INTERGENIC
3R	24205238	3R_24205238_SNP [dm3] 3R_28379516_SNP [dm6]	C	A	3.650e^-4	0.712	INTERGENIC
2L	9460806	2L_9460806_DEL [dm3] 2L_9460806_DEL [dm6]	AGAA	A	3.653e^-4	0.712	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9460885	2L_9460885_DEL [dm3] 2L_9460885_DEL [dm6]	CCTTCATCTA	C	3.653e^-4	0.712	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10306417	3L_10306417_INS [dm3] 3L_10313317_INS [dm6]	A	AA	3.654e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18069434	2R_18069434_SNP [dm3] 2R_22181929_SNP [dm6]	G	C	3.661e^-4	0.712	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	4138322	3R_4138322_SNP [dm3] 3R_8312600_SNP [dm6]	T	C	3.663e^-4	0.712	SYNONYMOUS_CODING CG11698 UPSTREAM CG11694 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	729350	3L_729350_SNP [dm3] 3L_729350_SNP [dm6]	C	T	3.663e^-4	0.712	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2209237	3L_2209237_SNP [dm3] 3L_2209237_SNP [dm6]	C	T	3.663e^-4	0.712	INTERGENIC
X	16153354	X_16153354_SNP [dm3] X_16259321_SNP [dm6]	T	A	3.669e^-4	0.712	INTERGENIC
2R	11156265	2R_11156265_SNP [dm3] 2R_15268760_SNP [dm6]	G	T	3.672e^-4	0.712	INTRON Trpm
3L	11407108	3L_11407108_SNP [dm3] 3L_11414008_SNP [dm6]	C	T	3.680e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	17707091	2R_17707091_SNP [dm3] 2R_21819586_SNP [dm6]	T	C	3.684e^-4	0.712	INTERGENIC
3R	26978182	3R_26978182_SNP [dm3] 3R_31152460_SNP [dm6]	A	G	3.687e^-4	0.712	SYNONYMOUS_CODING Gycbeta100B
2L	6830086	2L_6830086_SNP [dm3] 2L_6830086_SNP [dm6]	C	T	3.690e^-4	0.712	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23801638	3R_23801638_SNP [dm3] 3R_27975916_SNP [dm6]	C	T	3.714e^-4	0.712	INTRON betaTub97EF
3L	21996413	3L_21996413_SNP [dm3] 3L_22003313_SNP [dm6]	A	G	3.715e^-4	0.712	INTERGENIC
3L	8137945	3L_8137945_SNP [dm3] 3L_8144845_SNP [dm6]	A	C	3.716e^-4	0.712	INTRON CG13676
X	16814059	X_16814059_SNP [dm3] X_16920026_SNP [dm6]	T	G	3.720e^-4	0.712	INTRON CG4928
2R	16921396	2R_16921396_SNP [dm3] 2R_21033891_SNP [dm6]	A	C	3.724e^-4	0.712	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8469910	2L_8469910_SNP [dm3] 2L_8469910_SNP [dm6]	T	C	3.725e^-4	0.712	INTRON d
2R	18199043	2R_18199043_SNP [dm3] 2R_22311538_SNP [dm6]	A	C	3.726e^-4	0.712	UPSTREAM wdp INTRON wdp	TF binding site mE1_TFBS_Trl
2L	16390343	2L_16390343_DEL [dm3] 2L_16390343_DEL [dm6]	AA	A	3.733e^-4	0.712	INTERGENIC
3R	4928188	3R_4928188_SNP [dm3] 3R_9102466_SNP [dm6]	C	G	3.734e^-4	0.712	INTRON pum
3R	12748073	3R_12748073_SNP [dm3] 3R_16922351_SNP [dm6]	G	A	3.746e^-4	0.712	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14686637	3R_14686637_SNP [dm3] 3R_18860915_SNP [dm6]	T	C	3.749e^-4	0.712	INTERGENIC
3R	5785123	3R_5785123_SNP [dm3] 3R_9959401_SNP [dm6]	G	A	3.751e^-4	0.712	INTRON Glut4EF	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	21935182	3L_21935182_SNP [dm3] 3L_21942082_SNP [dm6]	C	G	3.754e^-4	0.712	UPSTREAM CG14562 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	10752953	2L_10752953_SNP [dm3] 2L_10752953_SNP [dm6]	A	T	3.756e^-4	0.712	INTRON CG17124	TF binding site mE1_TFBS_cad
X	10481709	X_10481709_SNP [dm3] X_10587676_SNP [dm6]	C	T	3.759e^-4	0.712	INTERGENIC
2R	12008893	2R_12008893_SNP [dm3] 2R_16121388_SNP [dm6]	C	T	3.760e^-4	0.712	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
2R	8723773	2R_8723773_SNP [dm3] 2R_12836268_SNP [dm6]	T	G	3.763e^-4	0.712	INTERGENIC
X	19168196	X_19168196_SNP [dm3] X_19274163_SNP [dm6]	G	A	3.765e^-4	0.712	SYNONYMOUS_CODING CG32537 DOWNSTREAM Vav & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2140306	3L_2140306_SNP [dm3] 3L_2140306_SNP [dm6]	C	T	3.767e^-4	0.712	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3532408	X_3532408_SNP [dm3] X_3638375_SNP [dm6]	G	C	3.771e^-4	0.712	INTRON AstA-R1
2R	11081401	2R_11081401_SNP [dm3] 2R_15193896_SNP [dm6]	C	T	3.774e^-4	0.712	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3R	4621596	3R_4621596_SNP [dm3] 3R_8795874_SNP [dm6]	C	T	3.780e^-4	0.712	NON_SYNONYMOUS_CODING Ir85a INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21995858	3L_21995858_SNP [dm3] 3L_22002758_SNP [dm6]	C	T	3.782e^-4	0.712	INTERGENIC
3L	14227718	3L_14227718_SNP [dm3] 3L_14234618_SNP [dm6]	G	A	3.784e^-4	0.712	DOWNSTREAM CG34244 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	4874909	3R_4874909_SNP [dm3] 3R_9049187_SNP [dm6]	G	A	3.786e^-4	0.712	START_GAINED Nmdmc UTR_5_PRIME Nmdmc UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2624136	2L_2624136_SNP [dm3] 2L_2624136_SNP [dm6]	C	G	3.792e^-4	0.712	INTERGENIC
2L	11837032	2L_11837032_SNP [dm3] 2L_11837032_SNP [dm6]	C	T	3.793e^-4	0.712	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
2R	18393942	2R_18393942_SNP [dm3] 2R_22506437_SNP [dm6]	G	T	3.797e^-4	0.712	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19918390	2R_19918390_SNP [dm3] 2R_24030867_SNP [dm6]	A	T	3.800e^-4	0.712	DOWNSTREAM Chi & 1 other INTRON CG30172
2L	11837033	2L_11837033_SNP [dm3] 2L_11837033_SNP [dm6]	A	G	3.803e^-4	0.712	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c
3L	10862368	3L_10862368_SNP [dm3] 3L_10869268_SNP [dm6]	T	C	3.805e^-4	0.712	UPSTREAM tna INTRON tna

By genomic position
Variant impact
Gene name

idx_Surv_5MeHg phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results