DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.900e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06863

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.0777	0.079

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3021 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16935169	2R_16935169_SNP [dm3] 2R_21047664_SNP [dm6]	C	T	7.318e^-8	0.088	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	1.132e^-7	0.088	INTRON nwk
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	1.403e^-7	0.088	INTRON nwk
2R	10628938	2R_10628938_SNP [dm3] 2R_14741433_SNP [dm6]	C	A	2.335e^-7	0.109	INTRON CG12858	TF binding site mE1_TFBS_cad
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	9.516e^-7	0.277	INTRON nwk
2L	9606514	2L_9606514_SNP [dm3] 2L_9606514_SNP [dm6]	A	G	1.197e^-6	0.277	INTERGENIC	regulatory region REDfly_CRMs
2L	9606539	2L_9606539_SNP [dm3] 2L_9606539_SNP [dm6]	G	T	1.197e^-6	0.277	INTERGENIC	regulatory region REDfly_CRMs
3L	10846523	3L_10846523_SNP [dm3] 3L_10853423_SNP [dm6]	T	G	1.292e^-6	0.277	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23732111	3R_23732111_SNP [dm3] 3R_27906389_SNP [dm6]	G	C	1.663e^-6	0.277	UPSTREAM CG34353 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	9609399	2L_9609399_SNP [dm3] 2L_9609399_SNP [dm6]	C	A	1.733e^-6	0.277	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	9609227	2L_9609227_SNP [dm3] 2L_9609227_SNP [dm6]	C	A	1.776e^-6	0.277	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
2L	9609329	2L_9609329_SNP [dm3] 2L_9609329_SNP [dm6]	A	C	1.776e^-6	0.277	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	9613929	2L_9613929_SNP [dm3] 2L_9613929_SNP [dm6]	G	A	1.948e^-6	0.281	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	18066420	3L_18066420_SNP [dm3] 3L_18073320_SNP [dm6]	T	A	2.139e^-6	0.282	INTRON CG44004
3L	14172597	3L_14172597_SNP [dm3] 3L_14179497_SNP [dm6]	C	T	2.888e^-6	0.282	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3L	23765906	3L_23765906_SNP [dm3] 3L_23772806_SNP [dm6]	C	A	2.986e^-6	0.282	INTERGENIC
2L	9611383	2L_9611383_SNP [dm3] 2L_9611383_SNP [dm6]	T	A	3.099e^-6	0.282	INTRON gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9615480	2L_9615480_SNP [dm3] 2L_9615480_SNP [dm6]	A	T	3.099e^-6	0.282	UPSTREAM GlcAT-S INTRON Trx-2
3L	18066419	3L_18066419_SNP [dm3] 3L_18073319_SNP [dm6]	C	A	3.352e^-6	0.282	INTRON CG44004
3L	10846657	3L_10846657_SNP [dm3] 3L_10853557_SNP [dm6]	G	A	3.353e^-6	0.282	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	3.460e^-6	0.282	INTRON nwk
3L	18066412	3L_18066412_SNP [dm3] 3L_18073312_SNP [dm6]	T	C	3.538e^-6	0.282	INTRON CG44004
3L	8009720	3L_8009720_SNP [dm3] 3L_8016620_SNP [dm6]	T	C	3.553e^-6	0.282	INTRON nmo
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	3.800e^-6	0.282	INTRON nwk
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	3.800e^-6	0.282	INTRON nwk
2L	6867029	2L_6867029_SNP [dm3] 2L_6867029_SNP [dm6]	T	G	4.204e^-6	0.282	INTRON Nha1
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	4.234e^-6	0.282	INTRON nwk
3L	18122084	3L_18122084_SNP [dm3] 3L_18128984_SNP [dm6]	A	T	4.474e^-6	0.282	UTR_3_PRIME Cyp312a1
3L	23326140	3L_23326140_DEL [dm3] 3L_23333040_DEL [dm6]	GAGTATGG	G	4.484e^-6	0.282	INTRON alpha-Cat	transposable element FlyBase
3R	7681095	3R_7681095_SNP [dm3] 3R_11855373_SNP [dm6]	G	T	4.605e^-6	0.282	INTRON CG6959
2L	9609410	2L_9609410_SNP [dm3] 2L_9609410_SNP [dm6]	T	C	4.893e^-6	0.282	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	18122083	3L_18122083_SNP [dm3] 3L_18128983_SNP [dm6]	T	G	5.023e^-6	0.282	UTR_3_PRIME Cyp312a1
3L	18122093	3L_18122093_MNP [dm3] 3L_18128993_MNP [dm6]	AAC	TTT	5.023e^-6	0.282	UTR_3_PRIME Cyp312a1
3R	7681044	3R_7681044_SNP [dm3] 3R_11855322_SNP [dm6]	C	T	5.121e^-6	0.282	INTRON CG6959
2R	9412047	2R_9412047_SNP [dm3] 2R_13524542_SNP [dm6]	A	G	5.470e^-6	0.289	UPSTREAM CG13332 INTRON Vmat
2L	9609006	2L_9609006_INS [dm3] 2L_9609006_INS [dm6]	T	TTCTACGATT	5.554e^-6	0.289	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18122098	3L_18122098_DEL [dm3] 3L_18128998_DEL [dm6]	CTGGTG	C	5.908e^-6	0.299	UTR_3_PRIME Cyp312a1
2L	9608956	2L_9608956_SNP [dm3] 2L_9608956_SNP [dm6]	G	A	6.438e^-6	0.316	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6757197	3L_6757197_SNP [dm3] 3L_6764097_SNP [dm6]	A	T	6.627e^-6	0.316	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14172763	3L_14172763_SNP [dm3] 3L_14179663_SNP [dm6]	G	A	6.835e^-6	0.316	INTERGENIC	regulatory region REDfly_CRMs
3L	8157993	3L_8157993_SNP [dm3] 3L_8164893_SNP [dm6]	T	C	6.903e^-6	0.316	UPSTREAM CG13675 INTRON CG13675
3L	23323540	3L_23323540_SNP [dm3] 3L_23330440_SNP [dm6]	G	C	7.779e^-6	0.322	INTRON alpha-Cat
X	14324705	X_14324705_SNP [dm3] X_14430672_SNP [dm6]	A	G	7.831e^-6	0.322	INTRON dpr8
2L	9610506	2L_9610506_SNP [dm3] 2L_9610506_SNP [dm6]	A	T	8.030e^-6	0.322	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	23446863	3L_23446863_SNP [dm3] 3L_23453763_SNP [dm6]	G	C	8.140e^-6	0.322	INTERGENIC	transposable element FlyBase
3L	23689575	3L_23689575_SNP [dm3] 3L_23696475_SNP [dm6]	G	A	8.272e^-6	0.322	INTERGENIC	transposable element FlyBase
2R	16722778	2R_16722778_SNP [dm3] 2R_20835273_SNP [dm6]	A	G	8.533e^-6	0.322	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9625239	2L_9625239_SNP [dm3] 2L_9625239_SNP [dm6]	T	A	8.555e^-6	0.322	UTR_5_PRIME CG31882	TF binding site mE1_TFBS_chinmo
3L	23315613	3L_23315613_SNP [dm3] 3L_23322513_SNP [dm6]	G	A	8.664e^-6	0.322	INTRON alpha-Cat	transposable element FlyBase
2R	17614527	2R_17614527_SNP [dm3] 2R_21727022_SNP [dm6]	C	T	8.752e^-6	0.322	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3L	6307099	3L_6307099_SNP [dm3] 3L_6313999_SNP [dm6]	C	T	8.769e^-6	0.322	INTERGENIC
3L	18069504	3L_18069504_SNP [dm3] 3L_18076404_SNP [dm6]	C	T	9.029e^-6	0.324	INTERGENIC
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	9.325e^-6	0.324	INTRON Octbeta2R
3L	5590574	3L_5590574_SNP [dm3] 3L_5597474_SNP [dm6]	G	A	9.354e^-6	0.324	DOWNSTREAM CG5150 INTERGENIC
2L	9610339	2L_9610339_SNP [dm3] 2L_9610339_SNP [dm6]	C	T	9.681e^-6	0.324	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3L	6757216	3L_6757216_SNP [dm3] 3L_6764116_SNP [dm6]	A	T	9.952e^-6	0.324	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9619369	2L_9619369_SNP [dm3] 2L_9619369_SNP [dm6]	C	A	1.016e^-5	0.324	INTRON GlcAT-S
3L	18794982	3L_18794982_SNP [dm3] 3L_18801882_SNP [dm6]	A	G	1.017e^-5	0.324	UPSTREAM ftz-f1 DOWNSTREAM CG14073 INTERGENIC
3L	23689730	3L_23689730_SNP [dm3] 3L_23696630_SNP [dm6]	C	A	1.019e^-5	0.324	INTERGENIC	transposable element FlyBase
3L	23395554	3L_23395554_DEL [dm3] 3L_23402454_DEL [dm6]	TGGCGAGCAGCAT...	T	1.069e^-5	0.327	INTERGENIC
3L	22044615	3L_22044615_SNP [dm3] 3L_22051515_SNP [dm6]	C	T	1.086e^-5	0.327	INTRON Oct-TyrR
3R	25543006	3R_25543006_SNP [dm3] 3R_29717284_SNP [dm6]	A	G	1.149e^-5	0.327	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13503418	2L_13503418_SNP [dm3] 2L_13503418_SNP [dm6]	C	G	1.182e^-5	0.327	UTR_3_PRIME B4
3L	6757244	3L_6757244_DEL [dm3] 3L_6764144_DEL [dm6]	TT	T	1.205e^-5	0.327	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6757231	3L_6757231_SNP [dm3] 3L_6764131_SNP [dm6]	T	G	1.217e^-5	0.327	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9624099	2L_9624099_SNP [dm3] 2L_9624099_SNP [dm6]	G	C	1.245e^-5	0.327	DOWNSTREAM GlcAT-S & 1 other INTERGENIC
3L	6757364	3L_6757364_SNP [dm3] 3L_6764264_SNP [dm6]	A	G	1.247e^-5	0.327	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	25542987	3R_25542987_SNP [dm3] 3R_29717265_SNP [dm6]	G	T	1.270e^-5	0.327	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14172481	3L_14172481_INS [dm3] 3L_14179381_INS [dm6]	T	TCCAACAGA	1.275e^-5	0.327	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3L	22898809	3L_22898809_SNP [dm3] 3L_22905709_SNP [dm6]	C	T	1.279e^-5	0.327	DOWNSTREAM BoYb INTERGENIC
3L	12689414	3L_12689414_SNP [dm3] 3L_12696314_SNP [dm6]	T	A	1.280e^-5	0.327	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23632932	3R_23632932_SNP [dm3] 3R_27807210_SNP [dm6]	C	A	1.300e^-5	0.327	INTRON CG34353
2L	9626057	2L_9626057_SNP [dm3] 2L_9626057_SNP [dm6]	G	A	1.310e^-5	0.327	UPSTREAM CG31882 INTERGENIC
2L	9626082	2L_9626082_SNP [dm3] 2L_9626082_SNP [dm6]	T	G	1.310e^-5	0.327	UPSTREAM CG31882 INTERGENIC
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	1.318e^-5	0.327	INTRON sano
2R	16735376	2R_16735376_SNP [dm3] 2R_20847871_SNP [dm6]	G	A	1.324e^-5	0.327	DOWNSTREAM CG17999 INTERGENIC
2R	13657853	2R_13657853_SNP [dm3] 2R_17770348_SNP [dm6]	G	T	1.350e^-5	0.327	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	23394468	3L_23394468_SNP [dm3] 3L_23401368_SNP [dm6]	C	T	1.360e^-5	0.327	INTERGENIC
3L	22047001	3L_22047001_SNP [dm3] 3L_22053901_SNP [dm6]	T	C	1.392e^-5	0.33	INTRON Oct-TyrR
3R	11863394	3R_11863394_INS [dm3] 3R_16037672_INS [dm6]	T	TGT	1.421e^-5	0.333	INTRON pnr
3R	7644470	3R_7644470_SNP [dm3] 3R_11818748_SNP [dm6]	T	G	1.477e^-5	0.334	SYNONYMOUS_CODING glo UPSTREAM CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	23583808	3L_23583808_SNP [dm3] 3L_23590708_SNP [dm6]	C	T	1.539e^-5	0.334	INTRON AGO3
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	1.542e^-5	0.334	INTRON beat-VI
3L	23561494	3L_23561494_SNP [dm3] 3L_23568394_SNP [dm6]	G	A	1.570e^-5	0.334	INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9622731	2L_9622731_SNP [dm3] 2L_9622731_SNP [dm6]	T	A	1.573e^-5	0.334	UTR_3_PRIME GlcAT-S DOWNSTREAM GlcAT-S
3L	23438518	3L_23438518_SNP [dm3] 3L_23445418_SNP [dm6]	A	C	1.574e^-5	0.334	INTERGENIC
3R	25542990	3R_25542990_SNP [dm3] 3R_29717268_SNP [dm6]	A	T	1.598e^-5	0.334	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18789603	3L_18789603_SNP [dm3] 3L_18796503_SNP [dm6]	G	T	1.628e^-5	0.334	INTRON ftz-f1
3R	7681156	3R_7681156_SNP [dm3] 3R_11855434_SNP [dm6]	T	C	1.630e^-5	0.334	INTRON CG6959
3L	12689471	3L_12689471_SNP [dm3] 3L_12696371_SNP [dm6]	T	A	1.645e^-5	0.334	INTRON mirr	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	3302936	X_3302936_SNP [dm3] X_3408903_SNP [dm6]	T	A	1.649e^-5	0.334	INTRON CR44999 & 1 other
3R	25542992	3R_25542992_SNP [dm3] 3R_29717270_SNP [dm6]	C	T	1.651e^-5	0.334	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17341131	3R_17341131_SNP [dm3] 3R_21515409_SNP [dm6]	A	G	1.684e^-5	0.334	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9610340	2L_9610340_SNP [dm3] 2L_9610340_SNP [dm6]	T	C	1.699e^-5	0.334	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
2R	13657644	2R_13657644_SNP [dm3] 2R_17770139_SNP [dm6]	C	T	1.701e^-5	0.334	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	23390194	3L_23390194_SNP [dm3] 3L_23397094_SNP [dm6]	A	G	1.716e^-5	0.334	INTERGENIC	transposable element FlyBase
2L	9625953	2L_9625953_SNP [dm3] 2L_9625953_SNP [dm6]	A	G	1.725e^-5	0.334	UPSTREAM CG31882 INTERGENIC
3R	25543060	3R_25543060_SNP [dm3] 3R_29717338_SNP [dm6]	C	A	1.764e^-5	0.336	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	23322902	3L_23322902_SNP [dm3] 3L_23329802_SNP [dm6]	T	A	1.803e^-5	0.336	UTR_3_PRIME alpha-Cat INTRON alpha-Cat	transposable element FlyBase
3L	23335266	3L_23335266_SNP [dm3] 3L_23342166_SNP [dm6]	C	A	1.804e^-5	0.336	DOWNSTREAM CG32230 INTRON CG32230
3R	7644127	3R_7644127_SNP [dm3] 3R_11818405_SNP [dm6]	G	T	1.825e^-5	0.336	UPSTREAM CoVa INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2R	16735375	2R_16735375_SNP [dm3] 2R_20847870_SNP [dm6]	A	G	1.838e^-5	0.336	DOWNSTREAM CG17999 INTERGENIC
3L	15237131	3L_15237131_SNP [dm3] 3L_15244031_SNP [dm6]	A	C	1.846e^-5	0.336	INTERGENIC
2L	4928598	2L_4928598_SNP [dm3] 2L_4928598_SNP [dm6]	C	T	1.888e^-5	0.34	UPSTREAM hoe1 INTRON hoe1
3L	23497091	3L_23497091_SNP [dm3] 3L_23503991_SNP [dm6]	T	G	1.907e^-5	0.341	INTERGENIC
2L	12651687	2L_12651687_SNP [dm3] 2L_12651687_SNP [dm6]	G	C	1.959e^-5	0.347	INTERGENIC
3L	13377222	3L_13377222_INS [dm3] 3L_13384122_INS [dm6]	A	AAT	1.981e^-5	0.347	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	2.030e^-5	0.351	INTRON nwk
3R	5236888	3R_5236888_SNP [dm3] 3R_9411166_SNP [dm6]	C	T	2.041e^-5	0.351	SYNONYMOUS_CODING Task7 UPSTREAM betaTub85D
3R	23632933	3R_23632933_SNP [dm3] 3R_27807211_SNP [dm6]	C	T	2.115e^-5	0.357	INTRON CG34353
3R	677500	3R_677500_SNP [dm3] 3R_4851778_SNP [dm6]	A	G	2.207e^-5	0.357	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sbb
3L	8717237	3L_8717237_SNP [dm3] 3L_8724137_SNP [dm6]	C	A	2.227e^-5	0.357	SPLICE_SITE_REGION CG6511 INTRON CG6511
2L	10179297	2L_10179297_SNP [dm3] 2L_10179297_SNP [dm6]	C	T	2.234e^-5	0.357	INTRON CG44153
3R	23224552	3R_23224552_SNP [dm3] 3R_27398830_SNP [dm6]	T	A	2.249e^-5	0.357	INTRON side
2R	14011096	2R_14011096_SNP [dm3] 2R_18123591_SNP [dm6]	C	T	2.282e^-5	0.357	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6756934	3L_6756934_SNP [dm3] 3L_6763834_SNP [dm6]	G	T	2.324e^-5	0.357	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	24273577	3L_24273577_INS [dm3] 3L_24280477_INS [dm6]	T	TT	2.325e^-5	0.357	INTRON Snap25
3L	12689417	3L_12689417_SNP [dm3] 3L_12696317_SNP [dm6]	C	T	2.330e^-5	0.357	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23636473	3R_23636473_SNP [dm3] 3R_27810751_SNP [dm6]	A	T	2.341e^-5	0.357	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7930430	3L_7930430_SNP [dm3] 3L_7937330_SNP [dm6]	T	C	2.345e^-5	0.357	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12651099	2L_12651099_SNP [dm3] 2L_12651099_SNP [dm6]	C	G	2.345e^-5	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16515913	3R_16515913_SNP [dm3] 3R_20690191_SNP [dm6]	G	A	2.354e^-5	0.357	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_chinmo
2R	10621883	2R_10621883_SNP [dm3] 2R_14734378_SNP [dm6]	C	T	2.367e^-5	0.357	INTERGENIC
3R	11556293	3R_11556293_SNP [dm3] 3R_15730571_SNP [dm6]	T	C	2.389e^-5	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25543001	3R_25543001_SNP [dm3] 3R_29717279_SNP [dm6]	G	C	2.413e^-5	0.357	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	4142908	2R_4142908_SNP [dm3] 2R_8255403_SNP [dm6]	A	C	2.460e^-5	0.357	NON_SYNONYMOUS_CODING CG14760
3R	23632225	3R_23632225_SNP [dm3] 3R_27806503_SNP [dm6]	A	G	2.468e^-5	0.357	INTRON CG34353
3L	7930365	3L_7930365_SNP [dm3] 3L_7937265_SNP [dm6]	G	T	2.474e^-5	0.357	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9615373	2L_9615373_SNP [dm3] 2L_9615373_SNP [dm6]	C	T	2.498e^-5	0.357	SYNONYMOUS_CODING Trx-2
2R	14011097	2R_14011097_SNP [dm3] 2R_18123592_SNP [dm6]	G	T	2.517e^-5	0.357	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11777281	3L_11777281_SNP [dm3] 3L_11784181_SNP [dm6]	G	A	2.519e^-5	0.357	SYNONYMOUS_CODING Pi3K68D
2R	9276314	2R_9276314_SNP [dm3] 2R_13388809_SNP [dm6]	G	A	2.539e^-5	0.357	DOWNSTREAM CG43691 INTERGENIC
X	8235997	X_8235997_SNP [dm3] X_8341964_SNP [dm6]	G	A	2.547e^-5	0.357	INTRON nAChRalpha3
3L	18794980	3L_18794980_SNP [dm3] 3L_18801880_SNP [dm6]	A	G	2.559e^-5	0.357	UPSTREAM ftz-f1 DOWNSTREAM CG14073 INTERGENIC
X	4125981	X_4125981_DEL [dm3] X_4231948_DEL [dm6]	TAAACTT	T	2.591e^-5	0.357	INTERGENIC
3R	6369628	3R_6369628_SNP [dm3] 3R_10543906_SNP [dm6]	G	A	2.613e^-5	0.357	INTRON hth
X	8236001	X_8236001_SNP [dm3] X_8341968_SNP [dm6]	T	C	2.619e^-5	0.357	INTRON nAChRalpha3
3L	12689420	3L_12689420_SNP [dm3] 3L_12696320_SNP [dm6]	G	A	2.670e^-5	0.357	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14171909	3L_14171909_SNP [dm3] 3L_14178809_SNP [dm6]	G	A	2.712e^-5	0.357	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	14088081	2R_14088081_SNP [dm3] 2R_18200576_SNP [dm6]	T	A	2.727e^-5	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24605213	3R_24605213_SNP [dm3] 3R_28779491_SNP [dm6]	G	T	2.731e^-5	0.357	INTERGENIC
3R	20587758	3R_20587758_SNP [dm3] 3R_24762036_SNP [dm6]	A	G	2.733e^-5	0.357	INTRON AstA	TF binding site mE1_TFBS_cad
3R	8634682	3R_8634682_SNP [dm3] 3R_12808960_SNP [dm6]	C	T	2.743e^-5	0.357	INTERGENIC
2R	8176570	2R_8176570_SNP [dm3] 2R_12289065_SNP [dm6]	A	C	2.769e^-5	0.357	INTRON CG42700
3L	22031386	3L_22031386_SNP [dm3] 3L_22038286_SNP [dm6]	G	A	2.775e^-5	0.357	INTRON Oct-TyrR
2R	13709282	2R_13709282_DEL [dm3] 2R_17821777_DEL [dm6]	TAAAGAAAATGTGAAAAGAT...	T	2.784e^-5	0.357	INTRON grh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
3L	23272530	3L_23272530_SNP [dm3] 3L_23279430_SNP [dm6]	T	G	2.799e^-5	0.357	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd transposable element FlyBase
3R	7644539	3R_7644539_SNP [dm3] 3R_11818817_SNP [dm6]	T	C	2.818e^-5	0.357	SYNONYMOUS_CODING glo UPSTREAM CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2L	948957	2L_948957_SNP [dm3] 2L_948957_SNP [dm6]	T	C	2.880e^-5	0.361	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	9604980	2L_9604980_SNP [dm3] 2L_9604980_SNP [dm6]	G	A	2.884e^-5	0.361	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3L	23395672	3L_23395672_SNP [dm3] 3L_23402572_SNP [dm6]	G	T	2.939e^-5	0.362	INTERGENIC
2L	13354165	2L_13354165_SNP [dm3] 2L_13354165_SNP [dm6]	T	A	2.944e^-5	0.362	SYNONYMOUS_CODING CG9395
3R	23636036	3R_23636036_SNP [dm3] 3R_27810314_SNP [dm6]	C	A	2.953e^-5	0.362	INTRON CG34353
3L	23323732	3L_23323732_SNP [dm3] 3L_23330632_SNP [dm6]	C	A	2.987e^-5	0.364	INTRON alpha-Cat
3L	13006416	3L_13006416_SNP [dm3] 3L_13013316_SNP [dm6]	G	A	3.015e^-5	0.365	SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22033753	3L_22033753_SNP [dm3] 3L_22040653_SNP [dm6]	T	C	3.034e^-5	0.365	INTRON Oct-TyrR
3L	13377103	3L_13377103_DEL [dm3] 3L_13384003_DEL [dm6]	AA	A	3.076e^-5	0.367	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	14172702	3L_14172702_SNP [dm3] 3L_14179602_SNP [dm6]	A	C	3.108e^-5	0.369	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
2R	10549252	2R_10549252_SNP [dm3] 2R_14661747_SNP [dm6]	G	C	3.140e^-5	0.369	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12652191	2L_12652191_SNP [dm3] 2L_12652191_SNP [dm6]	G	A	3.152e^-5	0.369	INTERGENIC
3L	23447367	3L_23447367_SNP [dm3] 3L_23454267_SNP [dm6]	G	A	3.202e^-5	0.369	INTERGENIC
3L	23507917	3L_23507917_SNP [dm3] 3L_23514817_SNP [dm6]	T	G	3.233e^-5	0.369	INTERGENIC	transposable element FlyBase
3R	7644114	3R_7644114_SNP [dm3] 3R_11818392_SNP [dm6]	A	G	3.244e^-5	0.369	UPSTREAM CoVa INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3L	4107967	3L_4107967_SNP [dm3] 3L_4107967_SNP [dm6]	G	A	3.244e^-5	0.369	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4762231	3R_4762231_SNP [dm3] 3R_8936509_SNP [dm6]	C	T	3.248e^-5	0.369	NON_SYNONYMOUS_CODING osk
3L	18245382	3L_18245382_SNP [dm3] 3L_18252282_SNP [dm6]	G	A	3.336e^-5	0.376	SYNONYMOUS_CODING CheA75a
3L	21277048	3L_21277048_SNP [dm3] 3L_21283948_SNP [dm6]	G	T	3.403e^-5	0.376	INTRON CG12974
X	13184020	X_13184020_SNP [dm3] X_13289987_SNP [dm6]	T	G	3.417e^-5	0.376	SYNONYMOUS_CODING CG15744	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	23476346	3L_23476346_SNP [dm3] 3L_23483246_SNP [dm6]	T	A	3.454e^-5	0.376	INTERGENIC	transposable element FlyBase
2L	6238737	2L_6238737_SNP [dm3] 2L_6238737_SNP [dm6]	G	T	3.515e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	18069015	3L_18069015_SNP [dm3] 3L_18075915_SNP [dm6]	C	A	3.532e^-5	0.376	UPSTREAM CR45391 INTERGENIC
3R	20566318	3R_20566318_SNP [dm3] 3R_24740596_SNP [dm6]	G	C	3.543e^-5	0.376	INTRON tok
2R	9287031	2R_9287031_DEL [dm3] 2R_13399526_DEL [dm6]	TCA	T	3.581e^-5	0.376	UPSTREAM CG4744 INTERGENIC
3L	23329671	3L_23329671_SNP [dm3] 3L_23336571_SNP [dm6]	G	A	3.582e^-5	0.376	INTRON alpha-Cat	transposable element FlyBase
2R	16715533	2R_16715533_SNP [dm3] 2R_20828028_SNP [dm6]	G	A	3.585e^-5	0.376	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad
2R	8991557	2R_8991557_SNP [dm3] 2R_13104052_SNP [dm6]	C	T	3.609e^-5	0.376	UTR_5_PRIME CG44341
2L	4928578	2L_4928578_SNP [dm3] 2L_4928578_SNP [dm6]	C	T	3.643e^-5	0.376	UPSTREAM hoe1 INTRON hoe1
3R	17144938	3R_17144938_SNP [dm3] 3R_21319216_SNP [dm6]	C	T	3.663e^-5	0.376	UTR_3_PRIME CG16791	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12092300	3L_12092300_SNP [dm3] 3L_12099200_SNP [dm6]	G	T	3.670e^-5	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13184644	X_13184644_SNP [dm3] X_13290611_SNP [dm6]	G	C	3.687e^-5	0.376	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23455475	3L_23455475_DEL [dm3] 3L_23462375_DEL [dm6]	TT	T	3.711e^-5	0.376	INTERGENIC	transposable element FlyBase
X	3302911	X_3302911_DEL [dm3] X_3408878_DEL [dm6]	AC	G	3.726e^-5	0.376	INTRON CR44999 & 1 other
2R	16711729	2R_16711729_SNP [dm3] 2R_20824224_SNP [dm6]	G	A	3.733e^-5	0.376	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14067057	2L_14067057_SNP [dm3] 2L_14067057_SNP [dm6]	T	G	3.737e^-5	0.376	INTRON nAChRalpha5
3L	7474747	3L_7474747_SNP [dm3] 3L_7481647_SNP [dm6]	T	C	3.750e^-5	0.376	INTERGENIC
2R	16731302	2R_16731302_SNP [dm3] 2R_20843797_SNP [dm6]	T	C	3.765e^-5	0.376	INTERGENIC
3L	23447453	3L_23447453_SNP [dm3] 3L_23454353_SNP [dm6]	C	G	3.767e^-5	0.376	INTERGENIC
2L	9618763	2L_9618763_SNP [dm3] 2L_9618763_SNP [dm6]	C	T	3.772e^-5	0.376	INTRON GlcAT-S
3R	14826134	3R_14826134_SNP [dm3] 3R_19000412_SNP [dm6]	A	C	3.878e^-5	0.385	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8386305	3R_8386305_SNP [dm3] 3R_12560583_SNP [dm6]	G	C	3.964e^-5	0.388	NON_SYNONYMOUS_CODING Octbeta2R
3R	5224594	3R_5224594_SNP [dm3] 3R_9398872_SNP [dm6]	C	A	3.970e^-5	0.388	NON_SYNONYMOUS_CODING Or85f DOWNSTREAM CG34117	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11208532	3L_11208532_SNP [dm3] 3L_11215432_SNP [dm6]	A	T	3.977e^-5	0.388	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12622511	2L_12622511_SNP [dm3] 2L_12622511_SNP [dm6]	A	C	4.030e^-5	0.388	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23583809	3L_23583809_SNP [dm3] 3L_23590709_SNP [dm6]	C	A	4.044e^-5	0.388	INTRON AGO3
3L	18069323	3L_18069323_SNP [dm3] 3L_18076223_SNP [dm6]	C	A	4.065e^-5	0.388	INTERGENIC
2R	15892374	2R_15892374_SNP [dm3] 2R_20004869_SNP [dm6]	G	A	4.075e^-5	0.388	SYNONYMOUS_CODING CG16898	TF binding site mE1_TFBS_HSA
2R	13657696	2R_13657696_SNP [dm3] 2R_17770191_SNP [dm6]	C	T	4.114e^-5	0.388	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18938482	2R_18938482_INS [dm3] 2R_23050959_INS [dm6]	A	AA	4.132e^-5	0.388	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16754498	3L_16754498_SNP [dm3] 3L_16761398_SNP [dm6]	G	T	4.152e^-5	0.388	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	17614524	2R_17614524_SNP [dm3] 2R_21727019_SNP [dm6]	T	A	4.164e^-5	0.388	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3L	12337546	3L_12337546_SNP [dm3] 3L_12344446_SNP [dm6]	G	A	4.164e^-5	0.388	INTRON CrzR
3L	23420943	3L_23420943_SNP [dm3] 3L_23427843_SNP [dm6]	A	C	4.219e^-5	0.388	INTERGENIC
3R	10410769	3R_10410769_SNP [dm3] 3R_14585047_SNP [dm6]	A	T	4.232e^-5	0.388	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	9322350	3L_9322350_SNP [dm3] 3L_9329250_SNP [dm6]	A	G	4.237e^-5	0.388	INTERGENIC
2L	4886659	2L_4886659_SNP [dm3] 2L_4886659_SNP [dm6]	A	T	4.251e^-5	0.388	DOWNSTREAM CG3008 INTERGENIC
2L	18071280	2L_18071280_SNP [dm3] 2L_18071280_SNP [dm6]	A	G	4.273e^-5	0.388	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9618772	2L_9618772_SNP [dm3] 2L_9618772_SNP [dm6]	G	C	4.308e^-5	0.388	INTRON GlcAT-S
2L	9622172	2L_9622172_SNP [dm3] 2L_9622172_SNP [dm6]	T	C	4.308e^-5	0.388	SYNONYMOUS_CODING GlcAT-S
X	14393618	X_14393618_SNP [dm3] X_14499585_SNP [dm6]	A	T	4.350e^-5	0.388	INTERGENIC
3R	11897665	3R_11897665_SNP [dm3] 3R_16071943_SNP [dm6]	A	C	4.360e^-5	0.388	UTR_5_PRIME Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10897121	3R_10897121_SNP [dm3] 3R_15071399_SNP [dm6]	C	A	4.361e^-5	0.388	INTRON dpr9	TF binding site mE1_TFBS_cad
3L	14511662	3L_14511662_SNP [dm3] 3L_14518562_SNP [dm6]	G	C	4.395e^-5	0.389	DOWNSTREAM CG9592 INTRON bbg
3L	22001716	3L_22001716_SNP [dm3] 3L_22008616_SNP [dm6]	T	A	4.463e^-5	0.39	INTERGENIC
3L	7828877	3L_7828877_SNP [dm3] 3L_7835777_SNP [dm6]	A	C	4.466e^-5	0.39	INTRON Pdp1
3L	23780916	3L_23780916_SNP [dm3] 3L_23787816_SNP [dm6]	A	G	4.478e^-5	0.39	DOWNSTREAM CG43968 INTERGENIC	transposable element FlyBase
3L	23388036	3L_23388036_SNP [dm3] 3L_23394936_SNP [dm6]	A	T	4.487e^-5	0.39	INTERGENIC
2R	16720867	2R_16720867_SNP [dm3] 2R_20833362_SNP [dm6]	T	C	4.514e^-5	0.39	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	8898205	2R_8898205_SNP [dm3] 2R_13010700_SNP [dm6]	C	A	4.563e^-5	0.392	INTERGENIC
2R	16733570	2R_16733570_SNP [dm3] 2R_20846065_SNP [dm6]	A	T	4.600e^-5	0.392	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9614631	2L_9614631_DEL [dm3] 2L_9614631_DEL [dm6]	CTAGC	C	4.603e^-5	0.392	INTRON Trx-2
3L	13377087	3L_13377087_INS [dm3] 3L_13383987_INS [dm6]	T	TATATT	4.622e^-5	0.392	UTR_3_PRIME ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3L	12379676	3L_12379676_SNP [dm3] 3L_12386576_SNP [dm6]	G	T	4.641e^-5	0.392	INTRON Ncc69	TF binding site mE1_TFBS_cnc
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	4.675e^-5	0.393	INTERGENIC
3L	5590595	3L_5590595_SNP [dm3] 3L_5597495_SNP [dm6]	T	G	4.730e^-5	0.394	DOWNSTREAM CG5150 INTERGENIC
3R	13438776	3R_13438776_SNP [dm3] 3R_17613054_SNP [dm6]	A	C	4.744e^-5	0.394	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3R	13370501	3R_13370501_SNP [dm3] 3R_17544779_SNP [dm6]	C	T	4.752e^-5	0.394	SYNONYMOUS_CODING SF1 UTR_3_PRIME SF1 DOWNSTREAM Prx3
3L	16754495	3L_16754495_SNP [dm3] 3L_16761395_SNP [dm6]	C	T	4.776e^-5	0.395	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	11402060	3R_11402060_SNP [dm3] 3R_15576338_SNP [dm6]	A	T	4.808e^-5	0.395	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	9622514	2L_9622514_SNP [dm3] 2L_9622514_SNP [dm6]	G	T	4.869e^-5	0.397	UTR_3_PRIME GlcAT-S
2R	7355909	2R_7355909_SNP [dm3] 2R_11468404_SNP [dm6]	A	G	4.891e^-5	0.397	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10428449	X_10428449_SNP [dm3] X_10534416_SNP [dm6]	A	G	4.908e^-5	0.397	INTRON spri
2R	18212275	2R_18212275_SNP [dm3] 2R_22324770_SNP [dm6]	G	A	4.908e^-5	0.397	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
X	13184473	X_13184473_SNP [dm3] X_13290440_SNP [dm6]	T	C	4.972e^-5	0.399	SYNONYMOUS_CODING CG15744	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13124108	3R_13124108_SNP [dm3] 3R_17298386_SNP [dm6]	T	C	4.982e^-5	0.399	INTERGENIC
2L	9618615	2L_9618615_SNP [dm3] 2L_9618615_SNP [dm6]	T	C	5.031e^-5	0.401	INTRON GlcAT-S
2R	16307786	2R_16307786_SNP [dm3] 2R_20420281_SNP [dm6]	C	T	5.059e^-5	0.402	INTERGENIC
2R	17641407	2R_17641407_SNP [dm3] 2R_21753902_SNP [dm6]	C	A	5.119e^-5	0.403	INTERGENIC
3L	18069507	3L_18069507_DEL [dm3] 3L_18076407_DEL [dm6]	ACAGACTGGTG...	A	5.132e^-5	0.403	INTERGENIC
3L	7620131	3L_7620131_SNP [dm3] 3L_7627031_SNP [dm6]	G	A	5.142e^-5	0.403	INTRON CG33275
3L	18789584	3L_18789584_SNP [dm3] 3L_18796484_SNP [dm6]	A	C	5.193e^-5	0.406	INTRON ftz-f1
3R	5727473	3R_5727473_SNP [dm3] 3R_9901751_SNP [dm6]	A	G	5.260e^-5	0.409	INTRON Glut4EF
3L	22780600	3L_22780600_SNP [dm3] 3L_22787500_SNP [dm6]	G	A	5.277e^-5	0.409	UTR_3_PRIME SPoCk UPSTREAM CG14448
3R	20566317	3R_20566317_SNP [dm3] 3R_24740595_SNP [dm6]	T	C	5.314e^-5	0.41	INTRON tok
3L	18067312	3L_18067312_SNP [dm3] 3L_18074212_SNP [dm6]	G	A	5.355e^-5	0.412	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
3L	23438911	3L_23438911_SNP [dm3] 3L_23445811_SNP [dm6]	A	T	5.409e^-5	0.413	INTERGENIC
2R	15052883	2R_15052883_SNP [dm3] 2R_19165378_SNP [dm6]	G	A	5.420e^-5	0.413	UTR_5_PRIME CG10737 INTRON CG10737
2R	17614529	2R_17614529_SNP [dm3] 2R_21727024_SNP [dm6]	C	A	5.476e^-5	0.416	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3R	10859785	3R_10859785_SNP [dm3] 3R_15034063_SNP [dm6]	G	A	5.549e^-5	0.42	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10897123	3R_10897123_SNP [dm3] 3R_15071401_SNP [dm6]	A	T	5.586e^-5	0.42	INTRON dpr9	TF binding site mE1_TFBS_cad
3R	14042988	3R_14042988_SNP [dm3] 3R_18217266_SNP [dm6]	T	C	5.597e^-5	0.42	SYNONYMOUS_CODING CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	526471	3R_526471_SNP [dm3] 3R_4700749_SNP [dm6]	C	A	5.692e^-5	0.425	INTRON CG43427
3R	23635652	3R_23635652_SNP [dm3] 3R_27809930_SNP [dm6]	C	T	5.717e^-5	0.425	INTRON CG34353
3L	23761760	3L_23761760_DEL [dm3] 3L_23768660_DEL [dm6]	TT	T	5.791e^-5	0.428	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13206290	3R_13206290_SNP [dm3] 3R_17380568_SNP [dm6]	G	A	5.802e^-5	0.428	INTRON Brf & 1 other
3L	22031552	3L_22031552_SNP [dm3] 3L_22038452_SNP [dm6]	G	A	5.887e^-5	0.43	INTRON Oct-TyrR
3R	13941927	3R_13941927_SNP [dm3] 3R_18116205_SNP [dm6]	T	G	5.916e^-5	0.43	INTRON sr
3L	22032537	3L_22032537_SNP [dm3] 3L_22039437_SNP [dm6]	G	C	5.922e^-5	0.43	INTRON Oct-TyrR
3L	23762071	3L_23762071_SNP [dm3] 3L_23768971_SNP [dm6]	T	C	5.937e^-5	0.43	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18069312	3L_18069312_SNP [dm3] 3L_18076212_SNP [dm6]	A	G	5.945e^-5	0.43	INTERGENIC
3L	17994354	3L_17994354_DEL [dm3] 3L_18001254_DEL [dm6]	ATA	A	5.968e^-5	0.43	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20566374	3R_20566374_SNP [dm3] 3R_24740652_SNP [dm6]	T	C	5.987e^-5	0.43	INTRON tok
3L	7193790	3L_7193790_SNP [dm3] 3L_7200690_SNP [dm6]	T	A	6.041e^-5	0.431	INTERGENIC
2R	12093128	2R_12093128_SNP [dm3] 2R_16205623_SNP [dm6]	C	T	6.059e^-5	0.431	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13377159	3L_13377159_SNP [dm3] 3L_13384059_SNP [dm6]	C	A	6.105e^-5	0.431	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	22769515	3R_22769515_SNP [dm3] 3R_26943793_SNP [dm6]	A	G	6.113e^-5	0.431	INTRON sda
2R	16735043	2R_16735043_SNP [dm3] 2R_20847538_SNP [dm6]	A	C	6.131e^-5	0.431	DOWNSTREAM CG17999 INTERGENIC
3L	23603692	3L_23603692_DEL [dm3] 3L_23610592_DEL [dm6]	TA	G	6.131e^-5	0.431	INTRON AGO3	transposable element FlyBase
3R	12940656	3R_12940656_SNP [dm3] 3R_17114934_SNP [dm6]	C	T	6.175e^-5	0.432	INTRON cher
3R	12357815	3R_12357815_SNP [dm3] 3R_16532093_SNP [dm6]	T	G	6.190e^-5	0.432	INTRON CG42342
3L	3498973	3L_3498973_SNP [dm3] 3L_3498973_SNP [dm6]	G	T	6.223e^-5	0.432	INTRON CG42324
X	14393645	X_14393645_SNP [dm3] X_14499612_SNP [dm6]	C	A	6.241e^-5	0.432	INTERGENIC
X	21451632	X_21451632_DEL [dm3] X_21580605_DEL [dm6]	CCAAAGTCT	C	6.347e^-5	0.438	INTERGENIC
3L	11776362	3L_11776362_SNP [dm3] 3L_11783262_SNP [dm6]	G	A	6.403e^-5	0.438	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19386332	3L_19386332_DEL [dm3] 3L_19393232_DEL [dm6]	TTCAGT	T	6.406e^-5	0.438	INTRON CG32206
3L	23574910	3L_23574910_SNP [dm3] 3L_23581810_SNP [dm6]	C	A	6.461e^-5	0.438	INTRON AGO3	transposable element FlyBase
2R	8197099	2R_8197099_SNP [dm3] 2R_12309594_SNP [dm6]	C	T	6.550e^-5	0.438	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23306706	3L_23306706_SNP [dm3] 3L_23313606_SNP [dm6]	C	A	6.562e^-5	0.438	INTERGENIC	transposable element FlyBase
3L	23584397	3L_23584397_SNP [dm3] 3L_23591297_SNP [dm6]	C	T	6.578e^-5	0.438	INTRON AGO3
2R	8991682	2R_8991682_SNP [dm3] 2R_13104177_SNP [dm6]	A	C	6.589e^-5	0.438	NON_SYNONYMOUS_CODING CG44341
2L	9609559	2L_9609559_SNP [dm3] 2L_9609559_SNP [dm6]	T	G	6.590e^-5	0.438	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	7622376	X_7622376_INS [dm3] X_7728343_INS [dm6]	T	TT	6.591e^-5	0.438	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2406538	3L_2406538_SNP [dm3] 3L_2406538_SNP [dm6]	T	A	6.600e^-5	0.438	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	23449858	3L_23449858_SNP [dm3] 3L_23456758_SNP [dm6]	C	A	6.603e^-5	0.438	INTERGENIC
3R	14826203	3R_14826203_SNP [dm3] 3R_19000481_SNP [dm6]	T	C	6.654e^-5	0.438	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3735389	3R_3735389_DEL [dm3] 3R_7909667_DEL [dm6]	CAA	C	6.661e^-5	0.438	UTR_3_PRIME Taf7 & 1 other DOWNSTREAM Taf7
3L	6308201	3L_6308201_SNP [dm3] 3L_6315101_SNP [dm6]	G	A	6.745e^-5	0.441	INTERGENIC
2L	922375	2L_922375_SNP [dm3] 2L_922375_SNP [dm6]	T	A	6.761e^-5	0.441	UPSTREAM CG4341 INTERGENIC
X	7625848	X_7625848_INS [dm3] X_7731815_INS [dm6]	G	GGTC	6.765e^-5	0.441	UTR_3_PRIME Pdp DOWNSTREAM CG12155
2L	9614626	2L_9614626_DEL [dm3] 2L_9614626_DEL [dm6]	TT	T	6.818e^-5	0.442	INTRON Trx-2
3L	23387786	3L_23387786_SNP [dm3] 3L_23394686_SNP [dm6]	A	T	6.913e^-5	0.447	INTERGENIC
3L	23732960	3L_23732960_SNP [dm3] 3L_23739860_SNP [dm6]	A	T	6.950e^-5	0.448	INTRON CG17698
2R	16723112	2R_16723112_SNP [dm3] 2R_20835607_SNP [dm6]	T	A	7.038e^-5	0.451	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	16104661	3R_16104661_SNP [dm3] 3R_20278939_SNP [dm6]	C	T	7.062e^-5	0.451	INTRON cic
X	3608099	X_3608099_INS [dm3] X_3714066_INS [dm6]	T	TCT	7.089e^-5	0.451	INTRON Rala
3R	23634071	3R_23634071_SNP [dm3] 3R_27808349_SNP [dm6]	G	C	7.098e^-5	0.451	INTRON CG34353
3R	10897128	3R_10897128_SNP [dm3] 3R_15071406_SNP [dm6]	T	A	7.198e^-5	0.456	INTRON dpr9	TF binding site mE1_TFBS_cad
2L	9616758	2L_9616758_SNP [dm3] 2L_9616758_SNP [dm6]	A	C	7.314e^-5	0.46	UPSTREAM GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	23643378	3L_23643378_SNP [dm3] 3L_23650278_SNP [dm6]	G	A	7.328e^-5	0.46	DOWNSTREAM AGO3 INTRON AGO3
2R	14011115	2R_14011115_SNP [dm3] 2R_18123610_SNP [dm6]	T	A	7.355e^-5	0.46	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7987364	3L_7987364_SNP [dm3] 3L_7994264_SNP [dm6]	A	G	7.401e^-5	0.46	INTRON nmo	TF binding site mE1_TFBS_cad
2L	9872901	2L_9872901_SNP [dm3] 2L_9872901_SNP [dm6]	G	A	7.417e^-5	0.46	INTRON nAChRalpha6
2L	9873108	2L_9873108_SNP [dm3] 2L_9873108_SNP [dm6]	G	C	7.417e^-5	0.46	INTRON nAChRalpha6
2R	17311370	2R_17311370_SNP [dm3] 2R_21423865_SNP [dm6]	C	T	7.434e^-5	0.46	INTRON Sdc
X	21890768	X_21890768_DEL [dm3] X_22488932_DEL [dm6]	CG	C	7.455e^-5	0.46	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	18069505	3L_18069505_SNP [dm3] 3L_18076405_SNP [dm6]	C	A	7.580e^-5	0.465	INTERGENIC
X	21890756	X_21890756_SNP [dm3] X_22488920_SNP [dm6]	C	T	7.583e^-5	0.465	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	18069009	3L_18069009_SNP [dm3] 3L_18075909_SNP [dm6]	T	C	7.729e^-5	0.47	UPSTREAM CR45391 INTERGENIC
2R	8259853	2R_8259853_SNP [dm3] 2R_12372348_SNP [dm6]	C	T	7.800e^-5	0.47	NON_SYNONYMOUS_CODING CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10807704	3R_10807704_SNP [dm3] 3R_14981982_SNP [dm6]	G	C	7.831e^-5	0.47	INTERGENIC
2R	8898213	2R_8898213_SNP [dm3] 2R_13010708_SNP [dm6]	G	A	7.866e^-5	0.47	INTERGENIC
X	21451631	X_21451631_SNP [dm3] X_21580604_SNP [dm6]	A	C	7.885e^-5	0.47	INTERGENIC
3L	15066166	3L_15066166_SNP [dm3] 3L_15073066_SNP [dm6]	G	A	7.926e^-5	0.47	SYNONYMOUS_CODING cp309 UPSTREAM cp309
3L	10901572	3L_10901572_SNP [dm3] 3L_10908472_SNP [dm6]	C	T	7.963e^-5	0.47	INTERGENIC
X	8389644	X_8389644_SNP [dm3] X_8495611_SNP [dm6]	A	G	7.993e^-5	0.47	INTRON CG33181
3R	16104595	3R_16104595_SNP [dm3] 3R_20278873_SNP [dm6]	C	A	8.010e^-5	0.47	INTRON cic
X	21890766	X_21890766_SNP [dm3] X_22488930_SNP [dm6]	T	G	8.035e^-5	0.47	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	7193744	3L_7193744_SNP [dm3] 3L_7200644_SNP [dm6]	T	C	8.052e^-5	0.47	INTERGENIC
3L	18123643	3L_18123643_SNP [dm3] 3L_18130543_SNP [dm6]	C	A	8.059e^-5	0.47	INTRON Cyp312a1
3R	21471636	3R_21471636_SNP [dm3] 3R_25645914_SNP [dm6]	T	A	8.067e^-5	0.47	UPSTREAM mir-92a INTRON jigr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13278712	3R_13278712_SNP [dm3] 3R_17452990_SNP [dm6]	T	G	8.078e^-5	0.47	INTERGENIC
3L	2390421	3L_2390421_SNP [dm3] 3L_2390421_SNP [dm6]	G	T	8.091e^-5	0.47	SPLICE_SITE_REGION CG32298 & 1 other SYNONYMOUS_CODING CG32298 UTR_5_PRIME CG32299 UPSTREAM CG32299 DOWNSTREAM CG42787 INTRON CG45186
2L	9609578	2L_9609578_DEL [dm3] 2L_9609578_DEL [dm6]	CC	C	8.116e^-5	0.47	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	494795	3L_494795_SNP [dm3] 3L_494795_SNP [dm6]	C	G	8.120e^-5	0.47	INTRON klar
2L	14334153	2L_14334153_SNP [dm3] 2L_14334153_SNP [dm6]	T	A	8.170e^-5	0.47	UPSTREAM CG33090 DOWNSTREAM ms_2_34Fe INTERGENIC
X	21890728	X_21890728_SNP [dm3] X_22488892_SNP [dm6]	A	T	8.194e^-5	0.47	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3R	6508455	3R_6508455_SNP [dm3] 3R_10682733_SNP [dm6]	A	T	8.201e^-5	0.47	EXON CR44230	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21470991	3R_21470991_SNP [dm3] 3R_25645269_SNP [dm6]	G	A	8.223e^-5	0.47	INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	5668780	3L_5668780_SNP [dm3] 3L_5675680_SNP [dm6]	T	A	8.240e^-5	0.47	INTRON sif
X	17588279	X_17588279_DEL [dm3] X_17694246_DEL [dm6]	TT	T	8.281e^-5	0.47	INTRON chas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7574102	2R_7574102_SNP [dm3] 2R_11686597_SNP [dm6]	A	T	8.285e^-5	0.47	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	6285630	2L_6285630_SNP [dm3] 2L_6285630_SNP [dm6]	T	C	8.289e^-5	0.47	INTRON Ddr	TF binding site mE1_TFBS_cad
2L	7301351	2L_7301351_DEL [dm3] 2L_7301351_DEL [dm6]	ACCTACCAGATCATGGATCT...	A	8.344e^-5	0.471	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	1573717	X_1573717_SNP [dm3] X_1679684_SNP [dm6]	G	A	8.428e^-5	0.475	DOWNSTREAM CG32809 INTRON CG32809
3L	15391687	3L_15391687_SNP [dm3] 3L_15398587_SNP [dm6]	A	T	8.505e^-5	0.477	INTERGENIC
2R	11476806	2R_11476806_SNP [dm3] 2R_15589301_SNP [dm6]	G	A	8.523e^-5	0.477	INTERGENIC
3L	4107951	3L_4107951_SNP [dm3] 3L_4107951_SNP [dm6]	T	C	8.604e^-5	0.48	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10628914	2R_10628914_SNP [dm3] 2R_14741409_SNP [dm6]	C	A	8.701e^-5	0.481	INTRON CG12858	TF binding site mE1_TFBS_cad
2R	16723567	2R_16723567_SNP [dm3] 2R_20836062_SNP [dm6]	A	G	8.709e^-5	0.481	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	14763002	X_14763002_DEL [dm3] X_14868969_DEL [dm6]	TA	G	8.729e^-5	0.481	INTRON Flo2 & 1 other
3R	453234	3R_453234_SNP [dm3] 3R_4627512_SNP [dm6]	T	C	8.746e^-5	0.481	INTRON 5-HT2A
2L	11555693	2L_11555693_DEL [dm3] 2L_11555693_DEL [dm6]	CGTTTATC	C	8.750e^-5	0.481	INTERGENIC
X	21890726	X_21890726_INS [dm3] X_22488890_INS [dm6]	G	TTCGTTTGCCCAC...	8.833e^-5	0.482	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	9600557	3L_9600557_SNP [dm3] 3L_9607457_SNP [dm6]	A	C	8.836e^-5	0.482	SYNONYMOUS_CODING CG3280
3L	15244870	3L_15244870_SNP [dm3] 3L_15251770_SNP [dm6]	T	G	8.837e^-5	0.482	INTERGENIC
3L	22001701	3L_22001701_SNP [dm3] 3L_22008601_SNP [dm6]	C	T	8.902e^-5	0.483	INTERGENIC
2L	9621833	2L_9621833_SNP [dm3] 2L_9621833_SNP [dm6]	C	T	8.902e^-5	0.483	INTRON GlcAT-S
X	20193160	X_20193160_SNP [dm3] X_20322133_SNP [dm6]	C	T	8.941e^-5	0.483	INTRON CG1504
X	13181881	X_13181881_SNP [dm3] X_13287848_SNP [dm6]	G	T	8.957e^-5	0.483	UPSTREAM CG15744 DOWNSTREAM CG15743 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	6090960	2L_6090960_SNP [dm3] 2L_6090960_SNP [dm6]	A	G	8.985e^-5	0.483	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9605079	2L_9605079_SNP [dm3] 2L_9605079_SNP [dm6]	G	A	9.037e^-5	0.484	INTERGENIC	regulatory region REDfly_CRMs
3L	18796677	3L_18796677_SNP [dm3] 3L_18803577_SNP [dm6]	T	C	9.053e^-5	0.484	NON_SYNONYMOUS_CODING CG14073
2L	5968820	2L_5968820_SNP [dm3] 2L_5968820_SNP [dm6]	A	G	9.081e^-5	0.484	SYNONYMOUS_CODING Ucp4C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19417176	X_19417176_SNP [dm3] X_19523143_SNP [dm6]	C	T	9.108e^-5	0.484	SYNONYMOUS_CODING CoRest	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_zfh1
3L	16533818	3L_16533818_SNP [dm3] 3L_16540718_SNP [dm6]	T	A	9.166e^-5	0.486	INTRON CG43373
3L	2390880	3L_2390880_SNP [dm3] 3L_2390880_SNP [dm6]	A	G	9.200e^-5	0.486	NON_SYNONYMOUS_CODING CG32298 START_GAINED CG32299 UTR_5_PRIME CG32299 UPSTREAM CG32299 INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	14438135	2R_14438135_DEL [dm3] 2R_18550630_DEL [dm6]	ACCAATGTTCTGAAATTTAA...	A	9.247e^-5	0.486	INTERGENIC
3R	23644470	3R_23644470_SNP [dm3] 3R_27818748_SNP [dm6]	C	T	9.250e^-5	0.486	INTRON CG34353
2L	9616741	2L_9616741_SNP [dm3] 2L_9616741_SNP [dm6]	C	A	9.278e^-5	0.486	UPSTREAM GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6273763	2R_6273763_SNP [dm3] 2R_10386258_SNP [dm6]	T	A	9.345e^-5	0.487	INTRON CG42732
3L	12080458	3L_12080458_SNP [dm3] 3L_12087358_SNP [dm6]	C	G	9.356e^-5	0.487	INTERGENIC
2L	13354228	2L_13354228_SNP [dm3] 2L_13354228_SNP [dm6]	G	A	9.396e^-5	0.487	SYNONYMOUS_CODING CG9395
2L	4928671	2L_4928671_SNP [dm3] 2L_4928671_SNP [dm6]	C	T	9.396e^-5	0.487	UPSTREAM hoe1 INTRON hoe1
2R	17496791	2R_17496791_SNP [dm3] 2R_21609286_SNP [dm6]	A	G	9.445e^-5	0.488	DOWNSTREAM CR43243 INTRON CG15673
2R	18028008	2R_18028008_SNP [dm3] 2R_22140503_SNP [dm6]	C	T	9.515e^-5	0.49	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
3L	2800570	3L_2800570_SNP [dm3] 3L_2800570_SNP [dm6]	G	A	9.548e^-5	0.491	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	542689	3R_542689_DEL [dm3] 3R_4716967_DEL [dm6]	TTTTTT	T	9.600e^-5	0.492	INTERGENIC	transposable element FlyBase
3L	6564182	3L_6564182_SNP [dm3] 3L_6571082_SNP [dm6]	T	G	9.688e^-5	0.494	NON_SYNONYMOUS_CODING jv INTRON CG18769
2R	15892400	2R_15892400_SNP [dm3] 2R_20004895_SNP [dm6]	C	G	9.716e^-5	0.494	NON_SYNONYMOUS_CODING CG16898	TF binding site mE1_TFBS_HSA
2R	17780009	2R_17780009_SNP [dm3] 2R_21892504_SNP [dm6]	A	G	9.718e^-5	0.494	INTRON Fili
2R	18027999	2R_18027999_SNP [dm3] 2R_22140494_SNP [dm6]	T	C	9.764e^-5	0.494	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
2R	14821929	2R_14821929_SNP [dm3] 2R_18934424_SNP [dm6]	G	A	9.807e^-5	0.494	INTRON sano
3L	22924955	3L_22924955_SNP [dm3] 3L_22931855_SNP [dm6]	G	A	9.830e^-5	0.494	INTERGENIC
3L	18796679	3L_18796679_SNP [dm3] 3L_18803579_SNP [dm6]	C	A	9.906e^-5	0.494	SYNONYMOUS_CODING CG14073
2L	17509405	2L_17509405_SNP [dm3] 2L_17509405_SNP [dm6]	C	A	9.913e^-5	0.494	SYNONYMOUS_CODING Dhc36C
2R	16717444	2R_16717444_SNP [dm3] 2R_20829939_SNP [dm6]	C	T	9.919e^-5	0.494	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10357880	3L_10357880_SNP [dm3] 3L_10364780_SNP [dm6]	G	C	9.922e^-5	0.494	UPSTREAM mir-276a EXON CR44327
2L	9602556	2L_9602556_SNP [dm3] 2L_9602556_SNP [dm6]	G	C	9.941e^-5	0.494	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9602505	2L_9602505_SNP [dm3] 2L_9602505_SNP [dm6]	G	C	9.966e^-5	0.494	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9188127	3R_9188127_SNP [dm3] 3R_13362405_SNP [dm6]	C	T	1.001e^-4	0.494	SYNONYMOUS_CODING poly	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10929813	X_10929813_SNP [dm3] X_11035780_SNP [dm6]	A	T	1.003e^-4	0.494	DOWNSTREAM CG42339 INTRON CG42339
3L	12848201	3L_12848201_SNP [dm3] 3L_12855101_SNP [dm6]	G	A	1.007e^-4	0.494	INTRON Ent3
2L	4783338	2L_4783338_SNP [dm3] 2L_4783338_SNP [dm6]	A	T	1.009e^-4	0.494	INTRON CG15630
X	14763108	X_14763108_SNP [dm3] X_14869075_SNP [dm6]	T	G	1.010e^-4	0.494	INTRON Flo2 & 1 other
3R	20587585	3R_20587585_SNP [dm3] 3R_24761863_SNP [dm6]	A	G	1.012e^-4	0.494	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9620500	2L_9620500_SNP [dm3] 2L_9620500_SNP [dm6]	C	T	1.025e^-4	0.495	INTRON GlcAT-S
3L	14172511	3L_14172511_SNP [dm3] 3L_14179411_SNP [dm6]	A	C	1.026e^-4	0.495	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	16533780	3L_16533780_SNP [dm3] 3L_16540680_SNP [dm6]	T	A	1.026e^-4	0.495	INTRON CG43373
3R	6725262	3R_6725262_SNP [dm3] 3R_10899540_SNP [dm6]	G	A	1.028e^-4	0.495	UPSTREAM CR45578 INTERGENIC
3L	22031313	3L_22031313_SNP [dm3] 3L_22038213_SNP [dm6]	G	A	1.029e^-4	0.495	INTRON Oct-TyrR
2R	18028108	2R_18028108_SNP [dm3] 2R_22140603_SNP [dm6]	C	A	1.030e^-4	0.495	INTRON a & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4783339	2L_4783339_SNP [dm3] 2L_4783339_SNP [dm6]	T	A	1.034e^-4	0.496	INTRON CG15630
X	14762998	X_14762998_SNP [dm3] X_14868965_SNP [dm6]	G	T	1.036e^-4	0.496	INTRON Flo2 & 1 other
X	13307201	X_13307201_SNP [dm3] X_13413168_SNP [dm6]	C	T	1.050e^-4	0.497	UPSTREAM Set2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4124855	X_4124855_SNP [dm3] X_4230822_SNP [dm6]	C	T	1.053e^-4	0.497	INTERGENIC
3L	6805404	3L_6805404_SNP [dm3] 3L_6812304_SNP [dm6]	T	C	1.053e^-4	0.497	INTERGENIC
3L	15066180	3L_15066180_SNP [dm3] 3L_15073080_SNP [dm6]	G	A	1.054e^-4	0.497	SYNONYMOUS_CODING cp309 UPSTREAM cp309
2R	18888472	2R_18888472_SNP [dm3] 2R_23000949_SNP [dm6]	A	C	1.059e^-4	0.497	INTRON twi
2R	18888494	2R_18888494_DEL [dm3] 2R_23000971_DEL [dm6]	ACA	A	1.059e^-4	0.497	INTRON twi
3L	14172486	3L_14172486_INS [dm3] 3L_14179386_INS [dm6]	A	AGGGACAATC	1.062e^-4	0.497	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
2L	1009256	2L_1009256_SNP [dm3] 2L_1009256_SNP [dm6]	A	G	1.065e^-4	0.497	UTR_3_PRIME IA-2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19670824	3R_19670824_SNP [dm3] 3R_23845102_SNP [dm6]	T	A	1.065e^-4	0.497	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3L	10614333	3L_10614333_SNP [dm3] 3L_10621233_SNP [dm6]	G	T	1.069e^-4	0.497	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13252513	3L_13252513_SNP [dm3] 3L_13259413_SNP [dm6]	C	G	1.072e^-4	0.497	INTRON caps
2R	16722809	2R_16722809_DEL [dm3] 2R_20835304_DEL [dm6]	CGGTATCC	C	1.072e^-4	0.497	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7474745	3L_7474745_INS [dm3] 3L_7481645_INS [dm6]	A	AAATG	1.081e^-4	0.5	INTERGENIC
3L	14172485	3L_14172485_SNP [dm3] 3L_14179385_SNP [dm6]	A	C	1.082e^-4	0.5	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
2R	8992594	2R_8992594_SNP [dm3] 2R_13105089_SNP [dm6]	T	C	1.084e^-4	0.5	DOWNSTREAM CG44341 INTERGENIC
3L	10141853	3L_10141853_SNP [dm3] 3L_10148753_SNP [dm6]	A	T	1.091e^-4	0.501	UTR_3_PRIME dpr10
3R	15738197	3R_15738197_SNP [dm3] 3R_19912475_SNP [dm6]	A	G	1.094e^-4	0.501	SYNONYMOUS_CODING RhoGAP92B	TF binding site mE1_TFBS_cad
3L	20717846	3L_20717846_SNP [dm3] 3L_20724746_SNP [dm6]	A	C	1.094e^-4	0.501	INTERGENIC
2R	6143749	2R_6143749_SNP [dm3] 2R_10256244_SNP [dm6]	T	A	1.109e^-4	0.501	UPSTREAM CG12911 DOWNSTREAM CG12913 INTERGENIC
3L	18107917	3L_18107917_SNP [dm3] 3L_18114817_SNP [dm6]	T	A	1.111e^-4	0.501	SPLICE_SITE_REGION CG32195 INTRON CG7341 & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	16735039	2R_16735039_SNP [dm3] 2R_20847534_SNP [dm6]	G	A	1.115e^-4	0.501	DOWNSTREAM CG17999 INTERGENIC
3L	7930542	3L_7930542_SNP [dm3] 3L_7937442_SNP [dm6]	T	A	1.119e^-4	0.501	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	20558806	3L_20558806_DEL [dm3] 3L_20565706_DEL [dm6]	GT	G	1.123e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	13657867	2R_13657867_SNP [dm3] 2R_17770362_SNP [dm6]	C	A	1.125e^-4	0.501	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9353736	2R_9353736_SNP [dm3] 2R_13466231_SNP [dm6]	C	T	1.127e^-4	0.501	INTRON arr
3L	18067010	3L_18067010_SNP [dm3] 3L_18073910_SNP [dm6]	A	G	1.130e^-4	0.501	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
3L	10267045	3L_10267045_SNP [dm3] 3L_10273945_SNP [dm6]	C	T	1.132e^-4	0.501	SYNONYMOUS_CODING Or67d
3L	10754729	3L_10754729_SNP [dm3] 3L_10761629_SNP [dm6]	A	T	1.134e^-4	0.501	INTERGENIC
3L	14512789	3L_14512789_SNP [dm3] 3L_14519689_SNP [dm6]	G	T	1.135e^-4	0.501	DOWNSTREAM CG4613 INTRON bbg
X	4137985	X_4137985_SNP [dm3] X_4243952_SNP [dm6]	A	G	1.135e^-4	0.501	DOWNSTREAM Muc4B INTERGENIC
3R	25947740	3R_25947740_DEL [dm3] 3R_30122018_DEL [dm6]	ATTGTA	A	1.138e^-4	0.501	UTR_3_PRIME CG45072 DOWNSTREAM CG45072 & 1 other INTRAGENIC CG45072 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1
3L	23326727	3L_23326727_SNP [dm3] 3L_23333627_SNP [dm6]	C	G	1.138e^-4	0.501	INTRON alpha-Cat	transposable element FlyBase
3R	21427687	3R_21427687_SNP [dm3] 3R_25601965_SNP [dm6]	G	A	1.143e^-4	0.501	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
2R	18947334	2R_18947334_SNP [dm3] 2R_23059811_SNP [dm6]	G	A	1.144e^-4	0.501	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14763010	X_14763010_SNP [dm3] X_14868977_SNP [dm6]	A	G	1.149e^-4	0.501	INTRON Flo2 & 1 other
X	14762919	X_14762919_SNP [dm3] X_14868886_SNP [dm6]	C	G	1.149e^-4	0.501	INTRON Flo2 & 1 other
3L	4107852	3L_4107852_SNP [dm3] 3L_4107852_SNP [dm6]	G	T	1.153e^-4	0.501	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16731462	2R_16731462_SNP [dm3] 2R_20843957_SNP [dm6]	T	C	1.156e^-4	0.501	INTERGENIC
3L	10846631	3L_10846631_SNP [dm3] 3L_10853531_SNP [dm6]	T	C	1.159e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9617004	2L_9617004_SNP [dm3] 2L_9617004_SNP [dm6]	C	T	1.163e^-4	0.501	UTR_5_PRIME GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4107947	3L_4107947_SNP [dm3] 3L_4107947_SNP [dm6]	C	A	1.166e^-4	0.501	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3680547	2L_3680547_SNP [dm3] 2L_3680547_SNP [dm6]	G	A	1.167e^-4	0.501	INTRON CG34340
3L	18796859	3L_18796859_SNP [dm3] 3L_18803759_SNP [dm6]	C	T	1.168e^-4	0.501	INTRON CG14073
X	14763129	X_14763129_DEL [dm3] X_14869096_DEL [dm6]	AA	A	1.169e^-4	0.501	INTRON Flo2 & 1 other
X	10010361	X_10010361_SNP [dm3] X_10116328_SNP [dm6]	A	T	1.171e^-4	0.501	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	16643935	3L_16643935_SNP [dm3] 3L_16650835_SNP [dm6]	C	A	1.174e^-4	0.501	INTRON Baldspot
2R	16960099	2R_16960099_SNP [dm3] 2R_21072594_SNP [dm6]	A	G	1.180e^-4	0.501	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
2R	13657643	2R_13657643_SNP [dm3] 2R_17770138_SNP [dm6]	G	T	1.183e^-4	0.501	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11188377	3L_11188377_INS [dm3] 3L_11195277_INS [dm6]	T	TT	1.187e^-4	0.501	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	15218521	2R_15218521_SNP [dm3] 2R_19331016_SNP [dm6]	T	C	1.188e^-4	0.501	SYNONYMOUS_CODING CG34045 INTRON Rgk1
3R	11293036	3R_11293036_SNP [dm3] 3R_15467314_SNP [dm6]	C	T	1.190e^-4	0.501	INTRON AdamTS-A
3L	18796681	3L_18796681_SNP [dm3] 3L_18803581_SNP [dm6]	C	G	1.190e^-4	0.501	NON_SYNONYMOUS_CODING CG14073
3R	19670812	3R_19670812_INS [dm3] 3R_23845090_INS [dm6]	C	CT	1.191e^-4	0.501	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	18858789	3R_18858789_SNP [dm3] 3R_23033067_SNP [dm6]	G	A	1.194e^-4	0.501	DOWNSTREAM CG13833 INTERGENIC
X	6216164	X_6216164_SNP [dm3] X_6322131_SNP [dm6]	T	G	1.199e^-4	0.501	INTRON CG15894
2R	10995362	2R_10995362_SNP [dm3] 2R_15107857_SNP [dm6]	C	T	1.201e^-4	0.501	INTERGENIC
3R	13880626	3R_13880626_SNP [dm3] 3R_18054904_SNP [dm6]	G	A	1.207e^-4	0.501	INTERGENIC
3R	11861031	3R_11861031_SNP [dm3] 3R_16035309_SNP [dm6]	T	G	1.213e^-4	0.501	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	22031551	3L_22031551_SNP [dm3] 3L_22038451_SNP [dm6]	G	A	1.214e^-4	0.501	INTRON Oct-TyrR
2L	9615080	2L_9615080_SNP [dm3] 2L_9615080_SNP [dm6]	G	C	1.215e^-4	0.501	INTRON Trx-2
3R	728324	3R_728324_SNP [dm3] 3R_4902602_SNP [dm6]	C	T	1.216e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12487398	3L_12487398_SNP [dm3] 3L_12494298_SNP [dm6]	C	A	1.220e^-4	0.501	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12487401	3L_12487401_SNP [dm3] 3L_12494301_SNP [dm6]	A	G	1.220e^-4	0.501	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15871375	3L_15871375_SNP [dm3] 3L_15878275_SNP [dm6]	C	T	1.221e^-4	0.501	INTRON pHCl
3L	10354673	3L_10354673_SNP [dm3] 3L_10361573_SNP [dm6]	A	C	1.224e^-4	0.501	EXON CR44327	TF binding site mE1_TFBS_cad
3R	10807687	3R_10807687_SNP [dm3] 3R_14981965_SNP [dm6]	G	A	1.227e^-4	0.501	INTERGENIC
X	8911823	X_8911823_SNP [dm3] X_9017790_SNP [dm6]	T	A	1.229e^-4	0.501	INTRON CR43836 & 1 other
2L	3680819	2L_3680819_SNP [dm3] 2L_3680819_SNP [dm6]	C	T	1.231e^-4	0.501	INTRON CG34340
2L	2081978	2L_2081978_SNP [dm3] 2L_2081978_SNP [dm6]	C	T	1.232e^-4	0.501	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6981819	3L_6981819_SNP [dm3] 3L_6988719_SNP [dm6]	C	T	1.238e^-4	0.501	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25535667	3R_25535667_SNP [dm3] 3R_29709945_SNP [dm6]	G	T	1.242e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4021781	2L_4021781_SNP [dm3] 2L_4021781_SNP [dm6]	A	T	1.244e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	8542472	2L_8542472_SNP [dm3] 2L_8542472_SNP [dm6]	T	A	1.246e^-4	0.501	UPSTREAM tRNA:CR31604 & 1 other DOWNSTREAM tRNA:CR31603 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16967125	2R_16967125_SNP [dm3] 2R_21079620_SNP [dm6]	A	G	1.246e^-4	0.501	UPSTREAM Treh INTRON Treh
X	16883453	X_16883453_SNP [dm3] X_16989420_SNP [dm6]	T	A	1.248e^-4	0.501	INTRON CG45002
3L	14511676	3L_14511676_SNP [dm3] 3L_14518576_SNP [dm6]	T	C	1.253e^-4	0.501	DOWNSTREAM CG9592 INTRON bbg
3L	10846629	3L_10846629_SNP [dm3] 3L_10853529_SNP [dm6]	T	C	1.254e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1718911	2L_1718911_SNP [dm3] 2L_1718911_SNP [dm6]	G	A	1.264e^-4	0.501	SPLICE_SITE_REGION Rim2 INTRON Rim2
3R	15776479	3R_15776479_SNP [dm3] 3R_19950757_SNP [dm6]	A	C	1.266e^-4	0.501	INTRON Hs6st
3L	7474748	3L_7474748_SNP [dm3] 3L_7481648_SNP [dm6]	A	C	1.268e^-4	0.501	INTERGENIC
X	21890729	X_21890729_SNP [dm3] X_22488893_SNP [dm6]	A	C	1.271e^-4	0.501	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3R	25947749	3R_25947749_SNP [dm3] 3R_30122027_SNP [dm6]	A	T	1.272e^-4	0.501	UTR_3_PRIME CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	1.275e^-4	0.501	INTERGENIC
3L	23237683	3L_23237683_SNP [dm3] 3L_23244583_SNP [dm6]	T	A	1.279e^-4	0.501	INTRON nAChRalpha4
2L	2590424	2L_2590424_SNP [dm3] 2L_2590424_SNP [dm6]	T	C	1.279e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25986435	3R_25986435_SNP [dm3] 3R_30160713_SNP [dm6]	G	A	1.284e^-4	0.501	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10138671	3R_10138671_SNP [dm3] 3R_14312949_SNP [dm6]	T	C	1.284e^-4	0.501	SYNONYMOUS_CODING CG31321
3L	23627874	3L_23627874_SNP [dm3] 3L_23634774_SNP [dm6]	G	C	1.286e^-4	0.501	INTRON AGO3
3R	20497304	3R_20497304_SNP [dm3] 3R_24671582_SNP [dm6]	C	G	1.289e^-4	0.501	INTRON slo
3R	25901375	3R_25901375_SNP [dm3] 3R_30075653_SNP [dm6]	C	T	1.290e^-4	0.501	INTRON sima
3L	3926680	3L_3926680_SNP [dm3] 3L_3926680_SNP [dm6]	C	T	1.292e^-4	0.501	INTRON Eip63F-1
2R	16717480	2R_16717480_SNP [dm3] 2R_20829975_SNP [dm6]	C	G	1.295e^-4	0.501	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14395089	X_14395089_SNP [dm3] X_14501056_SNP [dm6]	A	G	1.304e^-4	0.501	INTERGENIC
3L	18069334	3L_18069334_DEL [dm3] 3L_18076234_DEL [dm6]	TGGGGAT	T	1.304e^-4	0.501	INTERGENIC
2L	9618525	2L_9618525_SNP [dm3] 2L_9618525_SNP [dm6]	G	C	1.306e^-4	0.501	INTRON GlcAT-S
3R	8484074	3R_8484074_SNP [dm3] 3R_12658352_SNP [dm6]	G	A	1.307e^-4	0.501	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
3L	11776718	3L_11776718_SNP [dm3] 3L_11783618_SNP [dm6]	T	C	1.312e^-4	0.501	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6383275	3R_6383275_SNP [dm3] 3R_10557553_SNP [dm6]	T	C	1.314e^-4	0.501	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	11298645	3R_11298645_SNP [dm3] 3R_15472923_SNP [dm6]	C	A	1.315e^-4	0.501	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
3L	14512793	3L_14512793_SNP [dm3] 3L_14519693_SNP [dm6]	T	C	1.318e^-4	0.501	DOWNSTREAM CG4613 INTRON bbg
3R	11294941	3R_11294941_SNP [dm3] 3R_15469219_SNP [dm6]	C	A	1.320e^-4	0.501	INTRON AdamTS-A
2L	4021826	2L_4021826_SNP [dm3] 2L_4021826_SNP [dm6]	T	A	1.321e^-4	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_jumu
2L	8542024	2L_8542024_INS [dm3] 2L_8542024_INS [dm6]	A	ATTATGTTCCTTATTA...	1.322e^-4	0.501	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	7653460	3R_7653460_SNP [dm3] 3R_11827738_SNP [dm6]	G	A	1.325e^-4	0.501	INTRON CG6959
2R	16711636	2R_16711636_SNP [dm3] 2R_20824131_SNP [dm6]	C	G	1.327e^-4	0.501	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5660827	2L_5660827_SNP [dm3] 2L_5660827_SNP [dm6]	C	G	1.330e^-4	0.501	INTERGENIC
3L	4107958	3L_4107958_SNP [dm3] 3L_4107958_SNP [dm6]	T	A	1.333e^-4	0.501	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9625870	2L_9625870_SNP [dm3] 2L_9625870_SNP [dm6]	G	A	1.338e^-4	0.502	UPSTREAM CG31882 INTERGENIC
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	1.346e^-4	0.503	INTRON Flo2 & 1 other
X	4126062	X_4126062_SNP [dm3] X_4232029_SNP [dm6]	A	T	1.352e^-4	0.503	INTERGENIC
3L	22016211	3L_22016211_SNP [dm3] 3L_22023111_SNP [dm6]	G	C	1.356e^-4	0.503	INTERGENIC
3R	526470	3R_526470_SNP [dm3] 3R_4700748_SNP [dm6]	A	C	1.359e^-4	0.503	INTRON CG43427
X	17219926	X_17219926_SNP [dm3] X_17325893_SNP [dm6]	G	T	1.361e^-4	0.503	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	16079708	X_16079708_DEL [dm3] X_16185675_DEL [dm6]	TA	T	1.365e^-4	0.503	INTERGENIC
2L	13991989	2L_13991989_SNP [dm3] 2L_13991989_SNP [dm6]	T	C	1.366e^-4	0.503	INTRON rk
3L	6309523	3L_6309523_SNP [dm3] 3L_6316423_SNP [dm6]	G	A	1.367e^-4	0.503	INTERGENIC	regulatory region REDfly_CRMs
3L	16136358	3L_16136358_SNP [dm3] 3L_16143258_SNP [dm6]	G	A	1.368e^-4	0.503	SYNONYMOUS_CODING CG32152 UTR_5_PRIME CG5151 INTRON CG5151	TF binding site mE1_TFBS_sens
2R	14821682	2R_14821682_SNP [dm3] 2R_18934177_SNP [dm6]	A	T	1.371e^-4	0.503	INTRON sano
3L	15066163	3L_15066163_SNP [dm3] 3L_15073063_SNP [dm6]	T	C	1.375e^-4	0.503	SYNONYMOUS_CODING cp309 UPSTREAM cp309
3R	23631567	3R_23631567_SNP [dm3] 3R_27805845_SNP [dm6]	A	T	1.377e^-4	0.503	INTRON CG34353
X	10354709	X_10354709_INS [dm3] X_10460676_INS [dm6]	C	CT	1.377e^-4	0.503	UPSTREAM Neb-cGP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14822307	3R_14822307_SNP [dm3] 3R_18996585_SNP [dm6]	A	G	1.383e^-4	0.504	INTRON gukh	TF binding site mE1_TFBS_cad
3R	16619663	3R_16619663_SNP [dm3] 3R_20793941_SNP [dm6]	T	C	1.384e^-4	0.504	INTRON Syp
3L	12302013	3L_12302013_SNP [dm3] 3L_12308913_SNP [dm6]	A	G	1.387e^-4	0.504	INTERGENIC
2L	4294524	2L_4294524_SNP [dm3] 2L_4294524_SNP [dm6]	C	G	1.390e^-4	0.504	INTRON tutl
3L	23315019	3L_23315019_SNP [dm3] 3L_23321919_SNP [dm6]	A	T	1.395e^-4	0.504	INTRON alpha-Cat	transposable element FlyBase
3L	8897175	3L_8897175_SNP [dm3] 3L_8904075_SNP [dm6]	A	T	1.396e^-4	0.504	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
3L	23237242	3L_23237242_SNP [dm3] 3L_23244142_SNP [dm6]	G	A	1.415e^-4	0.507	INTRON nAChRalpha4	TF binding site mE1_TFBS_sens
2R	19644683	2R_19644683_SNP [dm3] 2R_23757160_SNP [dm6]	G	A	1.421e^-4	0.507	SYNONYMOUS_CODING CG9850 INTRON CG9850
2R	8991364	2R_8991364_SNP [dm3] 2R_13103859_SNP [dm6]	C	T	1.422e^-4	0.507	UPSTREAM CG44341 INTERGENIC
X	15869229	X_15869229_SNP [dm3] X_15975196_SNP [dm6]	C	T	1.425e^-4	0.507	SYNONYMOUS_CODING Or13a
2L	9625420	2L_9625420_SNP [dm3] 2L_9625420_SNP [dm6]	A	G	1.425e^-4	0.507	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13377124	3L_13377124_SNP [dm3] 3L_13384024_SNP [dm6]	A	T	1.430e^-4	0.507	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	12651929	2L_12651929_INS [dm3] 2L_12651929_INS [dm6]	A	ACACACGGCACACG...	1.433e^-4	0.507	INTERGENIC
3R	10514589	3R_10514589_SNP [dm3] 3R_14688867_SNP [dm6]	C	A	1.435e^-4	0.507	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11603420	3R_11603420_SNP [dm3] 3R_15777698_SNP [dm6]	A	T	1.438e^-4	0.507	DOWNSTREAM CG4525 INTERGENIC
3R	14056479	3R_14056479_SNP [dm3] 3R_18230757_SNP [dm6]	G	A	1.439e^-4	0.507	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11776384	3L_11776384_SNP [dm3] 3L_11783284_SNP [dm6]	G	A	1.440e^-4	0.507	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8541908	2L_8541908_SNP [dm3] 2L_8541908_SNP [dm6]	A	G	1.444e^-4	0.507	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	12652541	2L_12652541_SNP [dm3] 2L_12652541_SNP [dm6]	C	A	1.445e^-4	0.507	INTERGENIC
2L	1025342	2L_1025342_SNP [dm3] 2L_1025342_SNP [dm6]	A	G	1.447e^-4	0.507	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3R	22614850	3R_22614850_SNP [dm3] 3R_26789128_SNP [dm6]	T	C	1.448e^-4	0.507	INTERGENIC
3R	22614925	3R_22614925_SNP [dm3] 3R_26789203_SNP [dm6]	C	A	1.448e^-4	0.507	INTERGENIC
2L	5080728	2L_5080728_SNP [dm3] 2L_5080728_SNP [dm6]	T	C	1.450e^-4	0.507	INTRON pgant5
3R	11298644	3R_11298644_SNP [dm3] 3R_15472922_SNP [dm6]	T	A	1.452e^-4	0.507	INTRON AdamTS-A	TF binding site mE1_TFBS_zfh1
X	3303071	X_3303071_DEL [dm3] X_3409038_DEL [dm6]	TTAATCGCAACAGGATATTA...	T	1.459e^-4	0.507	INTRON CR44999 & 1 other
2L	6458924	2L_6458924_SNP [dm3] 2L_6458924_SNP [dm6]	G	A	1.460e^-4	0.507	UTR_3_PRIME frj DOWNSTREAM CG16947
3R	5742584	3R_5742584_SNP [dm3] 3R_9916862_SNP [dm6]	C	T	1.463e^-4	0.507	INTRON Glut4EF
3L	19343063	3L_19343063_SNP [dm3] 3L_19349963_SNP [dm6]	C	G	1.471e^-4	0.507	INTRON CG32206
3R	8691546	3R_8691546_SNP [dm3] 3R_12865824_SNP [dm6]	T	A	1.472e^-4	0.507	INTERGENIC
3L	23237333	3L_23237333_SNP [dm3] 3L_23244233_SNP [dm6]	A	G	1.472e^-4	0.507	INTRON nAChRalpha4	TF binding site mE1_TFBS_sens
3R	10856748	3R_10856748_SNP [dm3] 3R_15031026_SNP [dm6]	G	C	1.477e^-4	0.507	INTERGENIC
X	6152586	X_6152586_SNP [dm3] X_6258553_SNP [dm6]	A	C	1.477e^-4	0.507	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
2R	16724762	2R_16724762_SNP [dm3] 2R_20837257_SNP [dm6]	G	C	1.478e^-4	0.507	UPSTREAM CR44667 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Trl
3L	8891499	3L_8891499_SNP [dm3] 3L_8898399_SNP [dm6]	C	T	1.479e^-4	0.507	INTRON TrpA1
2L	9605216	2L_9605216_INS [dm3] 2L_9605216_INS [dm6]	C	TT	1.484e^-4	0.508	INTERGENIC	regulatory region REDfly_CRMs
3L	23682327	3L_23682327_SNP [dm3] 3L_23689227_SNP [dm6]	C	T	1.490e^-4	0.509	INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	14762917	X_14762917_SNP [dm3] X_14868884_SNP [dm6]	G	T	1.493e^-4	0.509	INTRON Flo2 & 1 other
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	1.494e^-4	0.509	INTRON jigr1
3R	5847231	3R_5847231_SNP [dm3] 3R_10021509_SNP [dm6]	T	G	1.504e^-4	0.509	UPSTREAM Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	22032198	3L_22032198_SNP [dm3] 3L_22039098_SNP [dm6]	T	C	1.504e^-4	0.509	INTRON Oct-TyrR
3L	12487740	3L_12487740_SNP [dm3] 3L_12494640_SNP [dm6]	C	T	1.505e^-4	0.509	INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9617040	2L_9617040_SNP [dm3] 2L_9617040_SNP [dm6]	G	T	1.505e^-4	0.509	UTR_5_PRIME GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13129286	3R_13129286_SNP [dm3] 3R_17303564_SNP [dm6]	G	T	1.518e^-4	0.511	INTERGENIC
2R	10471158	2R_10471158_SNP [dm3] 2R_14583653_SNP [dm6]	T	G	1.520e^-4	0.511	INTRON ttv	TF binding site mE1_TFBS_cad
X	21890744	X_21890744_SNP [dm3] X_22488908_SNP [dm6]	G	A	1.527e^-4	0.511	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
X	11874343	X_11874343_SNP [dm3] X_11980310_SNP [dm6]	C	A	1.528e^-4	0.511	INTRON cac
2L	9850005	2L_9850005_DEL [dm3] 2L_9850005_DEL [dm6]	GAGTACGTGTGCA...	T	1.531e^-4	0.511	INTRON nAChRalpha6
X	8859130	X_8859130_DEL [dm3] X_8965097_DEL [dm6]	TT	T	1.533e^-4	0.511	UPSTREAM mir-4964 INTRON rdgA
2L	8541901	2L_8541901_SNP [dm3] 2L_8541901_SNP [dm6]	A	G	1.537e^-4	0.511	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	18796840	3L_18796840_INS [dm3] 3L_18803740_INS [dm6]	A	AGA	1.539e^-4	0.511	INTRON CG14073
3L	14512669	3L_14512669_SNP [dm3] 3L_14519569_SNP [dm6]	A	T	1.540e^-4	0.511	DOWNSTREAM CG4613 INTRON bbg
X	17230634	X_17230634_SNP [dm3] X_17336601_SNP [dm6]	C	T	1.541e^-4	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2230621	3L_2230621_SNP [dm3] 3L_2230621_SNP [dm6]	C	T	1.545e^-4	0.511	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14511673	3L_14511673_SNP [dm3] 3L_14518573_SNP [dm6]	A	T	1.547e^-4	0.511	DOWNSTREAM CG9592 INTRON bbg
X	21890762	X_21890762_SNP [dm3] X_22488926_SNP [dm6]	G	A	1.549e^-4	0.511	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
X	21890733	X_21890733_SNP [dm3] X_22488897_SNP [dm6]	A	T	1.552e^-4	0.512	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	2392241	3L_2392241_SNP [dm3] 3L_2392241_SNP [dm6]	A	T	1.555e^-4	0.512	INTRON CG45186
2R	14813145	2R_14813145_SNP [dm3] 2R_18925640_SNP [dm6]	T	A	1.559e^-4	0.512	INTRON sano
2L	11548816	2L_11548816_SNP [dm3] 2L_11548816_SNP [dm6]	T	A	1.566e^-4	0.513	EXON CR44494	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16998842	3R_16998842_SNP [dm3] 3R_21173120_SNP [dm6]	C	T	1.573e^-4	0.513	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
3L	10907272	3L_10907272_SNP [dm3] 3L_10914172_SNP [dm6]	C	G	1.576e^-4	0.513	INTERGENIC
3L	23199167	3L_23199167_SNP [dm3] 3L_23206067_SNP [dm6]	T	C	1.577e^-4	0.513	UPSTREAM nAChRalpha4 INTERGENIC	transposable element FlyBase
3L	17618560	3L_17618560_SNP [dm3] 3L_17625460_SNP [dm6]	C	T	1.578e^-4	0.513	INTRON CG7510	TF binding site mE1_TFBS_inv
3R	21465818	3R_21465818_SNP [dm3] 3R_25640096_SNP [dm6]	T	A	1.579e^-4	0.513	INTRON jigr1
X	4292901	X_4292901_SNP [dm3] X_4398868_SNP [dm6]	A	T	1.583e^-4	0.514	INTRON CR32773
3L	17622645	3L_17622645_SNP [dm3] 3L_17629545_SNP [dm6]	T	A	1.592e^-4	0.516	INTRON CG7510
3L	13252508	3L_13252508_SNP [dm3] 3L_13259408_SNP [dm6]	G	A	1.598e^-4	0.516	INTRON caps
3R	11862657	3R_11862657_SNP [dm3] 3R_16036935_SNP [dm6]	A	G	1.600e^-4	0.516	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16010943	3L_16010943_SNP [dm3] 3L_16017843_SNP [dm6]	C	T	1.602e^-4	0.516	EXON CR43950	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	10138448	3L_10138448_SNP [dm3] 3L_10145348_SNP [dm6]	C	T	1.603e^-4	0.516	INTERGENIC
X	9645368	X_9645368_SNP [dm3] X_9751335_SNP [dm6]	A	G	1.606e^-4	0.516	INTRON Sp1
3L	4108126	3L_4108126_SNP [dm3] 3L_4108126_SNP [dm6]	A	C	1.616e^-4	0.518	UPSTREAM Ack & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8898215	2R_8898215_SNP [dm3] 2R_13010710_SNP [dm6]	C	T	1.624e^-4	0.52	INTERGENIC
3R	8691523	3R_8691523_INS [dm3] 3R_12865801_INS [dm6]	T	TT	1.638e^-4	0.523	INTERGENIC
X	21890754	X_21890754_SNP [dm3] X_22488918_SNP [dm6]	A	T	1.639e^-4	0.523	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
X	7108784	X_7108784_SNP [dm3] X_7214751_SNP [dm6]	A	C	1.642e^-4	0.523	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	7622393	X_7622393_SNP [dm3] X_7728360_SNP [dm6]	C	G	1.647e^-4	0.524	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6382386	3R_6382386_SNP [dm3] 3R_10556664_SNP [dm6]	C	T	1.653e^-4	0.524	INTRON hth
3R	14562770	3R_14562770_SNP [dm3] 3R_18737048_SNP [dm6]	A	G	1.655e^-4	0.524	SPLICE_SITE_REGION Mekk1 INTRON Mekk1
3R	23227740	3R_23227740_SNP [dm3] 3R_27402018_SNP [dm6]	C	T	1.656e^-4	0.524	INTRON side
3R	21544856	3R_21544856_SNP [dm3] 3R_25719134_SNP [dm6]	C	A	1.661e^-4	0.524	INTRON LpR2
2L	9621794	2L_9621794_SNP [dm3] 2L_9621794_SNP [dm6]	C	A	1.665e^-4	0.524	INTRON GlcAT-S
2R	8111287	2R_8111287_SNP [dm3] 2R_12223782_SNP [dm6]	G	A	1.666e^-4	0.524	DOWNSTREAM CG8854 INTERGENIC
2L	7365756	2L_7365756_SNP [dm3] 2L_7365756_SNP [dm6]	G	T	1.669e^-4	0.524	INTRON Wnt10
X	8239042	X_8239042_SNP [dm3] X_8345009_SNP [dm6]	T	C	1.673e^-4	0.524	INTRON nAChRalpha3
X	21890736	X_21890736_SNP [dm3] X_22488900_SNP [dm6]	A	T	1.676e^-4	0.524	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
2L	16401862	2L_16401862_SNP [dm3] 2L_16401862_SNP [dm6]	T	G	1.677e^-4	0.524	INTRON CG5888
3L	22016368	3L_22016368_DEL [dm3] 3L_22023268_DEL [dm6]	CCGCATTTCCTTCTAGAGCA...	C	1.678e^-4	0.524	INTERGENIC
2R	17023751	2R_17023751_SNP [dm3] 2R_21136246_SNP [dm6]	G	A	1.697e^-4	0.526	INTRON Magi	TF binding site mE1_TFBS_sens
X	21890753	X_21890753_SNP [dm3] X_22488917_SNP [dm6]	A	T	1.697e^-4	0.526	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	21269082	3L_21269082_SNP [dm3] 3L_21275982_SNP [dm6]	T	A	1.706e^-4	0.526	INTRON AcCoAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
2R	12239796	2R_12239796_SNP [dm3] 2R_16352291_SNP [dm6]	C	T	1.712e^-4	0.526	INTERGENIC
2R	10471432	2R_10471432_SNP [dm3] 2R_14583927_SNP [dm6]	A	G	1.715e^-4	0.526	SYNONYMOUS_CODING ttv	TF binding site mE1_TFBS_cad
3R	6913835	3R_6913835_SNP [dm3] 3R_11088113_SNP [dm6]	G	T	1.716e^-4	0.526	UPSTREAM CG43449 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11550183	3L_11550183_DEL [dm3] 3L_11557083_DEL [dm6]	GTG	G	1.719e^-4	0.526	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18787631	3L_18787631_SNP [dm3] 3L_18794531_SNP [dm6]	A	T	1.728e^-4	0.526	INTRON ftz-f1
3R	5757326	3R_5757326_SNP [dm3] 3R_9931604_SNP [dm6]	C	T	1.731e^-4	0.526	INTRON Glut4EF
2L	4928538	2L_4928538_SNP [dm3] 2L_4928538_SNP [dm6]	A	G	1.731e^-4	0.526	UPSTREAM hoe1 INTRON hoe1
3R	10859939	3R_10859939_SNP [dm3] 3R_15034217_SNP [dm6]	A	T	1.736e^-4	0.526	INTERGENIC	TF binding site mE1_TFBS_HSA
X	10434227	X_10434227_SNP [dm3] X_10540194_SNP [dm6]	G	A	1.736e^-4	0.526	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14012490	X_14012490_SNP [dm3] X_14118457_SNP [dm6]	C	A	1.744e^-4	0.526	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6308490	3L_6308490_SNP [dm3] 3L_6315390_SNP [dm6]	T	G	1.745e^-4	0.526	INTERGENIC	transposable element FlyBase
3L	467294	3L_467294_SNP [dm3] 3L_467294_SNP [dm6]	T	A	1.756e^-4	0.526	INTRON klar
2R	19654842	2R_19654842_SNP [dm3] 2R_23767319_SNP [dm6]	C	T	1.758e^-4	0.526	INTRON CG9850
2R	6590233	2R_6590233_INS [dm3] 2R_10702728_INS [dm6]	T	TGTCT	1.759e^-4	0.526	INTRON stan
2R	18957314	2R_18957314_SNP [dm3] 2R_23069791_SNP [dm6]	A	T	1.762e^-4	0.526	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9620814	2L_9620814_DEL [dm3] 2L_9620814_DEL [dm6]	TTAAA	T	1.763e^-4	0.526	INTRON GlcAT-S
3R	7678301	3R_7678301_SNP [dm3] 3R_11852579_SNP [dm6]	A	T	1.767e^-4	0.526	INTRON CG6959
3R	21570615	3R_21570615_SNP [dm3] 3R_25744893_SNP [dm6]	A	C	1.770e^-4	0.526	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
2R	7366223	2R_7366223_SNP [dm3] 2R_11478718_SNP [dm6]	G	A	1.773e^-4	0.526	INTRON inv	TF binding site BDTNP1_TFBS_dl
3L	18024189	3L_18024189_SNP [dm3] 3L_18031089_SNP [dm6]	T	C	1.776e^-4	0.526	INTRON Eip75B
2R	12276055	2R_12276055_SNP [dm3] 2R_16388550_SNP [dm6]	A	T	1.776e^-4	0.526	INTRON Sema-2b
2L	4783331	2L_4783331_INS [dm3] 2L_4783331_INS [dm6]	A	ACATA	1.777e^-4	0.526	INTRON CG15630
3L	2392284	3L_2392284_SNP [dm3] 3L_2392284_SNP [dm6]	A	T	1.777e^-4	0.526	INTRON CG45186
3L	2392343	3L_2392343_SNP [dm3] 3L_2392343_SNP [dm6]	G	A	1.777e^-4	0.526	INTRON CG45186
3L	18840103	3L_18840103_SNP [dm3] 3L_18847003_SNP [dm6]	C	T	1.778e^-4	0.526	UPSTREAM Indy INTERGENIC
3L	6757284	3L_6757284_SNP [dm3] 3L_6764184_SNP [dm6]	A	G	1.782e^-4	0.526	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11866461	3R_11866461_DEL [dm3] 3R_16040739_DEL [dm6]	GGTCTT	A	1.785e^-4	0.526	UTR_3_PRIME pnr
2R	16967206	2R_16967206_SNP [dm3] 2R_21079701_SNP [dm6]	C	A	1.789e^-4	0.526	UPSTREAM Treh INTRON Treh
3L	23280494	3L_23280494_SNP [dm3] 3L_23287394_SNP [dm6]	A	T	1.793e^-4	0.526	UTR_3_PRIME nAChRalpha4
3L	11776390	3L_11776390_SNP [dm3] 3L_11783290_SNP [dm6]	C	A	1.797e^-4	0.526	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5500935	X_5500935_SNP [dm3] X_5606902_SNP [dm6]	G	C	1.805e^-4	0.526	INTRON Vsx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21890749	X_21890749_SNP [dm3] X_22488913_SNP [dm6]	A	T	1.806e^-4	0.526	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3R	11866459	3R_11866459_SNP [dm3] 3R_16040737_SNP [dm6]	T	A	1.807e^-4	0.526	UTR_3_PRIME pnr
2L	9601903	2L_9601903_SNP [dm3] 2L_9601903_SNP [dm6]	G	T	1.809e^-4	0.526	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12699873	3L_12699873_SNP [dm3] 3L_12706773_SNP [dm6]	G	A	1.810e^-4	0.526	INTRON mirr	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18911222	3R_18911222_SNP [dm3] 3R_23085500_SNP [dm6]	A	C	1.810e^-4	0.526	INTRON CG13830
3L	7853818	3L_7853818_SNP [dm3] 3L_7860718_SNP [dm6]	A	T	1.812e^-4	0.526	INTRON Pdp1
2R	6753461	2R_6753461_SNP [dm3] 2R_10865956_SNP [dm6]	A	G	1.813e^-4	0.526	INTRON CG30015
X	10354924	X_10354924_SNP [dm3] X_10460891_SNP [dm6]	A	T	1.813e^-4	0.526	DOWNSTREAM nocte INTRON Neb-cGP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13806541	3R_13806541_SNP [dm3] 3R_17980819_SNP [dm6]	A	G	1.816e^-4	0.526	INTRON cpo
3L	2392246	3L_2392246_SNP [dm3] 3L_2392246_SNP [dm6]	A	T	1.822e^-4	0.526	INTRON CG45186
3L	2392263	3L_2392263_SNP [dm3] 3L_2392263_SNP [dm6]	T	C	1.822e^-4	0.526	INTRON CG45186
X	14905595	X_14905595_SNP [dm3] X_15011562_SNP [dm6]	G	A	1.824e^-4	0.526	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	18172200	X_18172200_SNP [dm3] X_18278167_SNP [dm6]	C	G	1.828e^-4	0.526	INTRON upd3
3R	13926655	3R_13926655_DEL [dm3] 3R_18100933_DEL [dm6]	GCTGTCTAGAGTAATATG...	G	1.829e^-4	0.526	INTRON sr
X	6883885	X_6883885_SNP [dm3] X_6989852_SNP [dm6]	A	G	1.831e^-4	0.526	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	5137842	3R_5137842_SNP [dm3] 3R_9312120_SNP [dm6]	A	C	1.833e^-4	0.526	INTRON CG8861
3R	21465759	3R_21465759_SNP [dm3] 3R_25640037_SNP [dm6]	T	A	1.833e^-4	0.526	INTRON jigr1
3L	15125861	3L_15125861_SNP [dm3] 3L_15132761_SNP [dm6]	G	A	1.842e^-4	0.526	NON_SYNONYMOUS_CODING CG12316
3R	13125097	3R_13125097_SNP [dm3] 3R_17299375_SNP [dm6]	A	T	1.851e^-4	0.526	INTERGENIC
2R	12221962	2R_12221962_SNP [dm3] 2R_16334457_SNP [dm6]	T	C	1.852e^-4	0.526	UPSTREAM Vha44 INTRON Vha44
3R	14836587	3R_14836587_SNP [dm3] 3R_19010865_SNP [dm6]	T	A	1.854e^-4	0.526	INTRON gukh
3R	14836588	3R_14836588_SNP [dm3] 3R_19010866_SNP [dm6]	A	T	1.854e^-4	0.526	INTRON gukh
3L	10614397	3L_10614397_SNP [dm3] 3L_10621297_SNP [dm6]	T	C	1.855e^-4	0.526	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	2404606	3L_2404606_SNP [dm3] 3L_2404606_SNP [dm6]	G	A	1.856e^-4	0.526	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	6832586	2R_6832586_SNP [dm3] 2R_10945081_SNP [dm6]	C	T	1.860e^-4	0.526	INTERGENIC
X	6152605	X_6152605_SNP [dm3] X_6258572_SNP [dm6]	T	A	1.861e^-4	0.526	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
X	6152619	X_6152619_SNP [dm3] X_6258586_SNP [dm6]	A	C	1.861e^-4	0.526	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
3R	7681134	3R_7681134_SNP [dm3] 3R_11855412_SNP [dm6]	A	T	1.863e^-4	0.526	INTRON CG6959
3L	10453415	3L_10453415_SNP [dm3] 3L_10460315_SNP [dm6]	G	A	1.865e^-4	0.526	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
2L	11693182	2L_11693182_INS [dm3] 2L_11693182_INS [dm6]	A	AA	1.867e^-4	0.526	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9623372	2L_9623372_SNP [dm3] 2L_9623372_SNP [dm6]	T	C	1.869e^-4	0.526	DOWNSTREAM GlcAT-S INTERGENIC
X	7635590	X_7635590_SNP [dm3] X_7741557_SNP [dm6]	G	A	1.879e^-4	0.528	INTERGENIC
2R	9755376	2R_9755376_SNP [dm3] 2R_13867871_SNP [dm6]	A	G	1.880e^-4	0.528	INTRON shot
2L	9311788	2L_9311788_SNP [dm3] 2L_9311788_SNP [dm6]	A	G	1.889e^-4	0.529	INTERGENIC
3L	11776952	3L_11776952_SNP [dm3] 3L_11783852_SNP [dm6]	C	T	1.893e^-4	0.529	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20834534	3R_20834534_SNP [dm3] 3R_25008812_SNP [dm6]	A	G	1.894e^-4	0.529	INTRON tnc	TF binding site mE1_TFBS_chinmo
2L	11027946	2L_11027946_SNP [dm3] 2L_11027946_SNP [dm6]	A	G	1.897e^-4	0.529	DOWNSTREAM Samuel INTRON Samuel
2L	4453888	2L_4453888_SNP [dm3] 2L_4453888_SNP [dm6]	C	A	1.903e^-4	0.529	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19686413	X_19686413_SNP [dm3] X_19792380_SNP [dm6]	T	A	1.905e^-4	0.529	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17286759	3R_17286759_DEL [dm3] 3R_21461037_DEL [dm6]	TT	T	1.906e^-4	0.529	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9605123	2L_9605123_SNP [dm3] 2L_9605123_SNP [dm6]	G	A	1.907e^-4	0.529	INTERGENIC	regulatory region REDfly_CRMs
X	21890739	X_21890739_SNP [dm3] X_22488903_SNP [dm6]	A	T	1.909e^-4	0.529	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	22847164	3L_22847164_SNP [dm3] 3L_22854064_SNP [dm6]	T	G	1.914e^-4	0.529	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426
3L	7828869	3L_7828869_SNP [dm3] 3L_7835769_SNP [dm6]	T	A	1.917e^-4	0.529	INTRON Pdp1
2L	9605074	2L_9605074_SNP [dm3] 2L_9605074_SNP [dm6]	A	C	1.918e^-4	0.529	INTERGENIC	regulatory region REDfly_CRMs
3L	23144175	3L_23144175_SNP [dm3] 3L_23151075_SNP [dm6]	T	C	1.928e^-4	0.529	UPSTREAM CG32350 DOWNSTREAM CR45164 INTERGENIC
3R	23221926	3R_23221926_SNP [dm3] 3R_27396204_SNP [dm6]	C	T	1.932e^-4	0.529	INTRON side
3R	11862687	3R_11862687_SNP [dm3] 3R_16036965_SNP [dm6]	T	G	1.933e^-4	0.529	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10121323	3L_10121323_SNP [dm3] 3L_10128223_SNP [dm6]	A	G	1.933e^-4	0.529	INTRON dpr6
3L	13221064	3L_13221064_SNP [dm3] 3L_13227964_SNP [dm6]	A	T	1.935e^-4	0.529	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14052727	3L_14052727_SNP [dm3] 3L_14059627_SNP [dm6]	C	T	1.937e^-4	0.529	INTRON CG32138
3R	18116492	3R_18116492_SNP [dm3] 3R_22290770_SNP [dm6]	G	A	1.938e^-4	0.529	INTRON SKIP
2L	4021791	2L_4021791_SNP [dm3] 2L_4021791_SNP [dm6]	T	G	1.944e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_jumu
2R	11800500	2R_11800500_SNP [dm3] 2R_15912995_SNP [dm6]	A	T	1.947e^-4	0.53	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	22086834	3L_22086834_SNP [dm3] 3L_22093734_SNP [dm6]	A	G	1.951e^-4	0.53	INTERGENIC
2L	6761265	2L_6761265_SNP [dm3] 2L_6761265_SNP [dm6]	G	C	1.954e^-4	0.53	SYNONYMOUS_CODING CG11321	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22029777	3L_22029777_SNP [dm3] 3L_22036677_SNP [dm6]	C	A	1.955e^-4	0.53	INTRON Oct-TyrR
3L	18261085	3L_18261085_SNP [dm3] 3L_18267985_SNP [dm6]	G	A	1.962e^-4	0.53	INTERGENIC
X	18917998	X_18917998_SNP [dm3] X_19023965_SNP [dm6]	T	C	1.962e^-4	0.53	INTRON CG43759
3L	2400019	3L_2400019_SNP [dm3] 3L_2400019_SNP [dm6]	T	C	1.967e^-4	0.53	UPSTREAM CG45186 INTRON CG45186
3L	17681659	3L_17681659_SNP [dm3] 3L_17688559_SNP [dm6]	T	G	1.969e^-4	0.53	INTERGENIC
X	17865671	X_17865671_SNP [dm3] X_17971638_SNP [dm6]	C	T	1.976e^-4	0.53	INTRON Sh
3L	23506892	3L_23506892_SNP [dm3] 3L_23513792_SNP [dm6]	T	G	1.976e^-4	0.53	INTERGENIC	transposable element FlyBase
3L	6808738	3L_6808738_SNP [dm3] 3L_6815638_SNP [dm6]	A	G	1.978e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15860198	X_15860198_SNP [dm3] X_15966165_SNP [dm6]	G	C	1.989e^-4	0.53	UPSTREAM mir-927 INTRON mmd
3R	15775766	3R_15775766_SNP [dm3] 3R_19950044_SNP [dm6]	A	G	1.995e^-4	0.53	INTRON Hs6st
3L	22034825	3L_22034825_SNP [dm3] 3L_22041725_SNP [dm6]	C	T	1.995e^-4	0.53	INTRON Oct-TyrR
3R	8129642	3R_8129642_SNP [dm3] 3R_12303920_SNP [dm6]	C	T	2.000e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17292240	2R_17292240_SNP [dm3] 2R_21404735_SNP [dm6]	T	G	2.001e^-4	0.53	INTRON Sdc
3L	3922845	3L_3922845_SNP [dm3] 3L_3922845_SNP [dm6]	T	A	2.002e^-4	0.53	INTRON Eip63F-1
X	4137943	X_4137943_SNP [dm3] X_4243910_SNP [dm6]	T	A	2.002e^-4	0.53	DOWNSTREAM Muc4B INTERGENIC
3L	22030001	3L_22030001_SNP [dm3] 3L_22036901_SNP [dm6]	G	T	2.005e^-4	0.53	INTRON Oct-TyrR	transposable element FlyBase
2R	11605284	2R_11605284_SNP [dm3] 2R_15717779_SNP [dm6]	C	A	2.006e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	936040	2L_936040_SNP [dm3] 2L_936040_SNP [dm6]	G	A	2.013e^-4	0.53	INTRON CG4341	TF binding site mE1_TFBS_Trl
3L	17976774	3L_17976774_SNP [dm3] 3L_17983674_SNP [dm6]	A	T	2.015e^-4	0.53	INTRON Eip75B
2L	4021771	2L_4021771_SNP [dm3] 2L_4021771_SNP [dm6]	A	T	2.016e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	16796145	X_16796145_SNP [dm3] X_16902112_SNP [dm6]	T	G	2.016e^-4	0.53	EXON CR44754
2R	13603437	2R_13603437_SNP [dm3] 2R_17715932_SNP [dm6]	G	A	2.016e^-4	0.53	UTR_5_PRIME CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2R	10995364	2R_10995364_SNP [dm3] 2R_15107859_SNP [dm6]	G	C	2.019e^-4	0.53	INTERGENIC
X	13177632	X_13177632_SNP [dm3] X_13283599_SNP [dm6]	T	A	2.021e^-4	0.53	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	4021780	2L_4021780_SNP [dm3] 2L_4021780_SNP [dm6]	C	T	2.022e^-4	0.53	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	20955927	3L_20955927_SNP [dm3] 3L_20962827_SNP [dm6]	G	C	2.034e^-4	0.53	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
X	9094978	X_9094978_DEL [dm3] X_9200945_DEL [dm6]	AA	A	2.039e^-4	0.53	INTRON su_r_
2L	3903538	2L_3903538_SNP [dm3] 2L_3903538_SNP [dm6]	A	G	2.040e^-4	0.53	UTR_3_PRIME fred UPSTREAM capu
X	14763121	X_14763121_SNP [dm3] X_14869088_SNP [dm6]	C	T	2.040e^-4	0.53	INTRON Flo2 & 1 other
2L	16955558	2L_16955558_SNP [dm3] 2L_16955558_SNP [dm6]	G	A	2.041e^-4	0.53	INTERGENIC
2L	5887009	2L_5887009_SNP [dm3] 2L_5887009_SNP [dm6]	C	T	2.043e^-4	0.53	DOWNSTREAM CR44577 & 1 other INTERGENIC
3L	6757493	3L_6757493_SNP [dm3] 3L_6764393_SNP [dm6]	T	A	2.045e^-4	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	15052827	2R_15052827_SNP [dm3] 2R_19165322_SNP [dm6]	C	A	2.049e^-4	0.531	UTR_5_PRIME CG10737 INTRON CG10737
2R	12260988	2R_12260988_SNP [dm3] 2R_16373483_SNP [dm6]	T	G	2.052e^-4	0.531	INTERGENIC
2R	11800566	2R_11800566_SNP [dm3] 2R_15913061_SNP [dm6]	G	T	2.056e^-4	0.531	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18275940	2R_18275940_SNP [dm3] 2R_22388435_SNP [dm6]	T	C	2.057e^-4	0.531	DOWNSTREAM CR44757 INTRON CG13506
3L	9679633	3L_9679633_SNP [dm3] 3L_9686533_SNP [dm6]	T	C	2.075e^-4	0.534	DOWNSTREAM CG16719 INTRON CG6767
2R	4411150	2R_4411150_SNP [dm3] 2R_8523645_SNP [dm6]	C	T	2.076e^-4	0.534	INTRON mtt
X	4137910	X_4137910_SNP [dm3] X_4243877_SNP [dm6]	C	A	2.082e^-4	0.534	DOWNSTREAM Muc4B INTERGENIC
2R	12047038	2R_12047038_SNP [dm3] 2R_16159533_SNP [dm6]	G	C	2.086e^-4	0.534	UPSTREAM CG10734 INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9616954	2L_9616954_SNP [dm3] 2L_9616954_SNP [dm6]	C	A	2.086e^-4	0.534	UTR_5_PRIME GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	14056387	3R_14056387_SNP [dm3] 3R_18230665_SNP [dm6]	T	G	2.091e^-4	0.534	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8111172	2R_8111172_SNP [dm3] 2R_12223667_SNP [dm6]	C	T	2.093e^-4	0.534	DOWNSTREAM CG8854 INTERGENIC
X	8292370	X_8292370_SNP [dm3] X_8398337_SNP [dm6]	C	G	2.095e^-4	0.534	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11988679	3R_11988679_SNP [dm3] 3R_16162957_SNP [dm6]	G	A	2.097e^-4	0.534	INTRON CG6006
2R	19004045	2R_19004045_SNP [dm3] 2R_23116522_SNP [dm6]	T	C	2.107e^-4	0.534	INTERGENIC
3R	14796177	3R_14796177_SNP [dm3] 3R_18970455_SNP [dm6]	C	A	2.110e^-4	0.534	INTRON CG42613 & 1 other
3L	12302010	3L_12302010_SNP [dm3] 3L_12308910_SNP [dm6]	A	G	2.112e^-4	0.534	INTERGENIC
3L	9969973	3L_9969973_SNP [dm3] 3L_9976873_SNP [dm6]	T	C	2.112e^-4	0.534	INTRON dpr6
3L	10354662	3L_10354662_SNP [dm3] 3L_10361562_SNP [dm6]	A	T	2.113e^-4	0.534	EXON CR44327	TF binding site mE1_TFBS_cad
3L	9120005	3L_9120005_SNP [dm3] 3L_9126905_SNP [dm6]	G	A	2.114e^-4	0.534	INTRON bol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	19237871	3L_19237871_SNP [dm3] 3L_19244771_SNP [dm6]	C	A	2.114e^-4	0.534	INTERGENIC
2R	16722474	2R_16722474_INS [dm3] 2R_20834969_INS [dm6]	C	CAC	2.123e^-4	0.535	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9605043	2L_9605043_SNP [dm3] 2L_9605043_SNP [dm6]	T	C	2.128e^-4	0.536	INTERGENIC	regulatory region REDfly_CRMs
2R	14824574	2R_14824574_SNP [dm3] 2R_18937069_SNP [dm6]	A	G	2.131e^-4	0.536	INTRON sano
3L	6757262	3L_6757262_SNP [dm3] 3L_6764162_SNP [dm6]	C	T	2.151e^-4	0.54	UPSTREAM CG32392 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10628924	2R_10628924_DEL [dm3] 2R_14741419_DEL [dm6]	TAAT	T	2.153e^-4	0.54	INTRON CG12858	TF binding site mE1_TFBS_cad
3L	9107416	3L_9107416_SNP [dm3] 3L_9114316_SNP [dm6]	C	T	2.160e^-4	0.54	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12649308	2L_12649308_SNP [dm3] 2L_12649308_SNP [dm6]	G	A	2.165e^-4	0.54	INTERGENIC
X	12834085	X_12834085_SNP [dm3] X_12940052_SNP [dm6]	T	A	2.167e^-4	0.54	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	14935942	2R_14935942_SNP [dm3] 2R_19048437_SNP [dm6]	A	C	2.170e^-4	0.54	INTERGENIC
3L	2400021	3L_2400021_SNP [dm3] 3L_2400021_SNP [dm6]	G	T	2.170e^-4	0.54	UPSTREAM CG45186 INTRON CG45186
2R	16563554	2R_16563554_SNP [dm3] 2R_20676049_SNP [dm6]	A	T	2.173e^-4	0.54	INTERGENIC
3L	16273221	3L_16273221_DEL [dm3] 3L_16280121_DEL [dm6]	ACAAAAGCAACCAACCAACC...	A	2.175e^-4	0.54	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
3L	12691730	3L_12691730_SNP [dm3] 3L_12698630_SNP [dm6]	A	G	2.180e^-4	0.54	INTRON mirr	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	18067586	3L_18067586_SNP [dm3] 3L_18074486_SNP [dm6]	A	C	2.180e^-4	0.54	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
2L	9618021	2L_9618021_SNP [dm3] 2L_9618021_SNP [dm6]	G	A	2.195e^-4	0.543	INTRON GlcAT-S
3R	8384611	3R_8384611_SNP [dm3] 3R_12558889_SNP [dm6]	C	T	2.202e^-4	0.544	INTRON Octbeta2R
3L	16655330	3L_16655330_SNP [dm3] 3L_16662230_SNP [dm6]	T	G	2.206e^-4	0.544	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5742631	3R_5742631_SNP [dm3] 3R_9916909_SNP [dm6]	G	C	2.207e^-4	0.544	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25179236	3R_25179236_SNP [dm3] 3R_29353514_SNP [dm6]	G	A	2.213e^-4	0.545	INTERGENIC
2L	18589939	2L_18589939_SNP [dm3] 2L_18589939_SNP [dm6]	A	G	2.221e^-4	0.546	UPSTREAM CG15160 INTRON Pde11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7801582	3L_7801582_SNP [dm3] 3L_7808482_SNP [dm6]	G	C	2.227e^-4	0.547	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12694649	3L_12694649_SNP [dm3] 3L_12701549_SNP [dm6]	T	A	2.234e^-4	0.548	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13116639	2L_13116639_SNP [dm3] 2L_13116639_SNP [dm6]	C	A	2.249e^-4	0.548	INTERGENIC
2R	16834791	2R_16834791_INS [dm3] 2R_20947286_INS [dm6]	C	CCGAA	2.251e^-4	0.548	DOWNSTREAM Act57B INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4388998	2L_4388998_SNP [dm3] 2L_4388998_SNP [dm6]	A	C	2.251e^-4	0.548	INTRON Tps1
2R	6832582	2R_6832582_SNP [dm3] 2R_10945077_SNP [dm6]	C	A	2.255e^-4	0.548	INTERGENIC
X	3774258	X_3774258_SNP [dm3] X_3880225_SNP [dm6]	C	T	2.261e^-4	0.548	SYNONYMOUS_CODING CG2930 UPSTREAM VhaAC39-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18776136	3L_18776136_SNP [dm3] 3L_18783036_SNP [dm6]	G	A	2.262e^-4	0.548	INTRON ftz-f1
2R	9849817	2R_9849817_SNP [dm3] 2R_13962312_SNP [dm6]	C	T	2.264e^-4	0.548	SYNONYMOUS_CODING Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12437203	2R_12437203_SNP [dm3] 2R_16549698_SNP [dm6]	T	C	2.268e^-4	0.548	INTERGENIC
X	14393029	X_14393029_SNP [dm3] X_14498996_SNP [dm6]	G	A	2.268e^-4	0.548	INTERGENIC
3R	22490532	3R_22490532_SNP [dm3] 3R_26664810_SNP [dm6]	G	A	2.269e^-4	0.548	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
3L	23760572	3L_23760572_SNP [dm3] 3L_23767472_SNP [dm6]	A	G	2.271e^-4	0.548	INTERGENIC	transposable element FlyBase
3R	11308302	3R_11308302_SNP [dm3] 3R_15482580_SNP [dm6]	T	C	2.272e^-4	0.548	SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	TF binding site mE1_TFBS_chinmo
X	1567759	X_1567759_DEL [dm3] X_1673726_DEL [dm6]	CATAC	C	2.283e^-4	0.549	UTR_3_PRIME CG32809 DOWNSTREAM hfw
2R	18871361	2R_18871361_SNP [dm3] 2R_22983838_SNP [dm6]	G	A	2.284e^-4	0.549	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22057757	2L_22057757_SNP [dm3] 2L_22057757_SNP [dm6]	A	T	2.285e^-4	0.549	INTERGENIC
X	21453220	X_21453220_SNP [dm3] X_21582193_SNP [dm6]	C	T	2.286e^-4	0.549	INTERGENIC
2L	12075511	2L_12075511_SNP [dm3] 2L_12075511_SNP [dm6]	C	A	2.290e^-4	0.549	UPSTREAM CG14947 INTERGENIC
3L	9557521	3L_9557521_SNP [dm3] 3L_9564421_SNP [dm6]	G	T	2.294e^-4	0.549	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9616693	2L_9616693_SNP [dm3] 2L_9616693_SNP [dm6]	T	A	2.298e^-4	0.549	UPSTREAM GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	19724809	2R_19724809_SNP [dm3] 2R_23837286_SNP [dm6]	G	T	2.301e^-4	0.549	NON_SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12107335	X_12107335_SNP [dm3] X_12213302_SNP [dm6]	G	C	2.302e^-4	0.549	INTRON Ten-a
3L	23444944	3L_23444944_SNP [dm3] 3L_23451844_SNP [dm6]	G	C	2.303e^-4	0.549	INTERGENIC
3R	22769495	3R_22769495_SNP [dm3] 3R_26943773_SNP [dm6]	A	T	2.312e^-4	0.55	INTRON sda
3R	11861591	3R_11861591_SNP [dm3] 3R_16035869_SNP [dm6]	C	A	2.314e^-4	0.55	INTRON pnr
3R	2987929	3R_2987929_SNP [dm3] 3R_7162207_SNP [dm6]	G	C	2.319e^-4	0.55	UPSTREAM sas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	23233594	3L_23233594_SNP [dm3] 3L_23240494_SNP [dm6]	C	T	2.322e^-4	0.551	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
3R	18713228	3R_18713228_SNP [dm3] 3R_22887506_SNP [dm6]	C	T	2.342e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9618228	2L_9618228_SNP [dm3] 2L_9618228_SNP [dm6]	C	T	2.342e^-4	0.552	INTRON GlcAT-S
X	19897009	X_19897009_DEL [dm3] X_20002976_DEL [dm6]	GTGG	G	2.344e^-4	0.552	UPSTREAM CG17003 INTERGENIC
2R	8992592	2R_8992592_SNP [dm3] 2R_13105087_SNP [dm6]	C	T	2.346e^-4	0.552	DOWNSTREAM CG44341 INTERGENIC
3L	2782146	3L_2782146_SNP [dm3] 3L_2782146_SNP [dm6]	T	G	2.346e^-4	0.552	UPSTREAM pgant6 DOWNSTREAM mRpS35 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	26780582	3R_26780582_SNP [dm3] 3R_30954860_SNP [dm6]	G	A	2.347e^-4	0.552	INTERGENIC
2L	1652589	2L_1652589_SNP [dm3] 2L_1652589_SNP [dm6]	C	T	2.354e^-4	0.553	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16868581	2L_16868581_SNP [dm3] 2L_16868581_SNP [dm6]	C	A	2.360e^-4	0.554	UPSTREAM CR31781 INTERGENIC
3R	5428201	3R_5428201_SNP [dm3] 3R_9602479_SNP [dm6]	C	T	2.362e^-4	0.554	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16712570	2R_16712570_SNP [dm3] 2R_20825065_SNP [dm6]	A	G	2.373e^-4	0.556	INTRON insc	TF binding site mE1_TFBS_cad
X	10300423	X_10300423_SNP [dm3] X_10406390_SNP [dm6]	G	A	2.384e^-4	0.558	SYNONYMOUS_CODING flw
3L	6842608	3L_6842608_SNP [dm3] 3L_6849508_SNP [dm6]	C	T	2.393e^-4	0.559	INTERGENIC
3L	17936629	3L_17936629_SNP [dm3] 3L_17943529_SNP [dm6]	T	C	2.400e^-4	0.56	INTRON CG43174
3R	20002133	3R_20002133_SNP [dm3] 3R_24176411_SNP [dm6]	A	T	2.418e^-4	0.561	INTRON CG13606
3L	10004259	3L_10004259_SNP [dm3] 3L_10011159_SNP [dm6]	A	G	2.418e^-4	0.561	INTRON dpr6
3L	14512777	3L_14512777_SNP [dm3] 3L_14519677_SNP [dm6]	C	A	2.418e^-4	0.561	DOWNSTREAM CG4613 INTRON bbg
2R	8481382	2R_8481382_DEL [dm3] 2R_12593877_DEL [dm6]	CC	C	2.422e^-4	0.561	UTR_5_PRIME Amph UPSTREAM Sin3A & 1 other DOWNSTREAM CR43909	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	2.423e^-4	0.561	INTRON tok
X	6345987	X_6345987_SNP [dm3] X_6451954_SNP [dm6]	T	C	2.438e^-4	0.561	INTRON CG42340
3R	11441301	3R_11441301_SNP [dm3] 3R_15615579_SNP [dm6]	G	A	2.443e^-4	0.561	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	8364783	3L_8364783_SNP [dm3] 3L_8371683_SNP [dm6]	T	A	2.443e^-4	0.561	UPSTREAM ImpE1 INTERGENIC
2R	8109239	2R_8109239_SNP [dm3] 2R_12221734_SNP [dm6]	G	C	2.445e^-4	0.561	INTERGENIC
2R	8109241	2R_8109241_SNP [dm3] 2R_12221736_SNP [dm6]	G	C	2.445e^-4	0.561	INTERGENIC
2R	8109247	2R_8109247_SNP [dm3] 2R_12221742_SNP [dm6]	C	G	2.445e^-4	0.561	INTERGENIC
3R	13109171	3R_13109171_SNP [dm3] 3R_17283449_SNP [dm6]	C	G	2.445e^-4	0.561	UPSTREAM CG31418 INTERGENIC
X	20891586	X_20891586_SNP [dm3] X_21020559_SNP [dm6]	G	A	2.446e^-4	0.561	INTERGENIC
2L	4308074	2L_4308074_SNP [dm3] 2L_4308074_SNP [dm6]	T	C	2.450e^-4	0.562	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20587785	3R_20587785_SNP [dm3] 3R_24762063_SNP [dm6]	A	G	2.454e^-4	0.562	INTRON AstA
X	14763042	X_14763042_SNP [dm3] X_14869009_SNP [dm6]	C	T	2.458e^-4	0.562	INTRON Flo2 & 1 other
3L	3669224	3L_3669224_SNP [dm3] 3L_3669224_SNP [dm6]	A	T	2.459e^-4	0.562	INTERGENIC
2L	6684180	2L_6684180_SNP [dm3] 2L_6684180_SNP [dm6]	G	A	2.467e^-4	0.563	START_GAINED Nhe3 UTR_5_PRIME Nhe3 DOWNSTREAM CG11327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	10859954	3R_10859954_SNP [dm3] 3R_15034232_SNP [dm6]	T	G	2.472e^-4	0.563	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7359001	2R_7359001_SNP [dm3] 2R_11471496_SNP [dm6]	G	A	2.473e^-4	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7830162	3L_7830162_SNP [dm3] 3L_7837062_SNP [dm6]	C	T	2.482e^-4	0.564	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4021783	2L_4021783_SNP [dm3] 2L_4021783_SNP [dm6]	C	A	2.488e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	10852712	3L_10852712_SNP [dm3] 3L_10859612_SNP [dm6]	G	A	2.501e^-4	0.566	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	22066195	3L_22066195_SNP [dm3] 3L_22073095_SNP [dm6]	G	T	2.503e^-4	0.566	UTR_3_PRIME CG7133 DOWNSTREAM CR43995
2R	14439623	2R_14439623_SNP [dm3] 2R_18552118_SNP [dm6]	T	C	2.505e^-4	0.566	INTERGENIC
2L	9601864	2L_9601864_SNP [dm3] 2L_9601864_SNP [dm6]	A	G	2.508e^-4	0.566	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12260941	2R_12260941_SNP [dm3] 2R_16373436_SNP [dm6]	T	C	2.510e^-4	0.566	INTERGENIC
3R	9223382	3R_9223382_SNP [dm3] 3R_13397660_SNP [dm6]	A	T	2.514e^-4	0.566	UPSTREAM CG14377 & 1 other DOWNSTREAM CG9796 INTERGENIC
2R	13972970	2R_13972970_SNP [dm3] 2R_18085465_SNP [dm6]	T	A	2.515e^-4	0.566	INTRON CG34386
3L	12694640	3L_12694640_SNP [dm3] 3L_12701540_SNP [dm6]	C	T	2.517e^-4	0.566	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18185672	2R_18185672_INS [dm3] 2R_22298167_INS [dm6]	T	TT	2.528e^-4	0.567	DOWNSTREAM wdp INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6265900	2L_6265900_SNP [dm3] 2L_6265900_SNP [dm6]	A	G	2.529e^-4	0.567	INTRON Ddr
2L	4457139	2L_4457139_SNP [dm3] 2L_4457139_SNP [dm6]	G	A	2.531e^-4	0.567	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9412141	2R_9412141_SNP [dm3] 2R_13524636_SNP [dm6]	A	G	2.534e^-4	0.567	UPSTREAM CG13332 INTRON Vmat
3R	5224197	3R_5224197_SNP [dm3] 3R_9398475_SNP [dm6]	A	G	2.539e^-4	0.567	NON_SYNONYMOUS_CODING Or85f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13972979	2R_13972979_SNP [dm3] 2R_18085474_SNP [dm6]	C	T	2.549e^-4	0.569	INTRON CG34386
3R	8484053	3R_8484053_SNP [dm3] 3R_12658331_SNP [dm6]	T	A	2.550e^-4	0.569	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
3R	13372488	3R_13372488_SNP [dm3] 3R_17546766_SNP [dm6]	C	T	2.567e^-4	0.57	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10463975	3R_10463975_SNP [dm3] 3R_14638253_SNP [dm6]	T	C	2.570e^-4	0.57	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	8982466	2R_8982466_SNP [dm3] 2R_13094961_SNP [dm6]	T	A	2.577e^-4	0.57	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12549042	2L_12549042_SNP [dm3] 2L_12549042_SNP [dm6]	C	G	2.582e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17780178	2R_17780178_SNP [dm3] 2R_21892673_SNP [dm6]	A	G	2.583e^-4	0.57	INTRON Fili
2L	2772239	2L_2772239_SNP [dm3] 2L_2772239_SNP [dm6]	G	C	2.583e^-4	0.57	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
3R	6257443	3R_6257443_SNP [dm3] 3R_10431721_SNP [dm6]	A	C	2.585e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14439830	2R_14439830_SNP [dm3] 2R_18552325_SNP [dm6]	G	C	2.586e^-4	0.57	INTERGENIC
2R	14439880	2R_14439880_SNP [dm3] 2R_18552375_SNP [dm6]	A	G	2.586e^-4	0.57	INTERGENIC
X	19686410	X_19686410_SNP [dm3] X_19792377_SNP [dm6]	A	T	2.594e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6406490	2R_6406490_SNP [dm3] 2R_10518985_SNP [dm6]	G	C	2.595e^-4	0.57	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola
2L	9616667	2L_9616667_SNP [dm3] 2L_9616667_SNP [dm6]	A	G	2.596e^-4	0.57	UPSTREAM GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8111157	2R_8111157_SNP [dm3] 2R_12223652_SNP [dm6]	A	T	2.597e^-4	0.57	DOWNSTREAM CG8854 INTERGENIC
2R	13640972	2R_13640972_INS [dm3] 2R_17753467_INS [dm6]	T	TATAT	2.599e^-4	0.57	DOWNSTREAM CG6385 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9684680	2R_9684680_SNP [dm3] 2R_13797175_SNP [dm6]	A	T	2.600e^-4	0.57	INTRON Cpr50Cb
3R	11397701	3R_11397701_SNP [dm3] 3R_15571979_SNP [dm6]	T	A	2.605e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4004630	3L_4004630_SNP [dm3] 3L_4004630_SNP [dm6]	G	T	2.608e^-4	0.57	SYNONYMOUS_CODING CG14985 UTR_3_PRIME CG14985	TF binding site mE1_TFBS_cad
3R	8370481	3R_8370481_SNP [dm3] 3R_12544759_SNP [dm6]	G	C	2.622e^-4	0.571	INTRON Octbeta3R
3R	14006024	3R_14006024_SNP [dm3] 3R_18180302_SNP [dm6]	A	G	2.624e^-4	0.571	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
3L	6309127	3L_6309127_SNP [dm3] 3L_6316027_SNP [dm6]	G	A	2.624e^-4	0.571	INTERGENIC	regulatory region REDfly_CRMs
X	17156069	X_17156069_SNP [dm3] X_17262036_SNP [dm6]	G	A	2.624e^-4	0.571	UPSTREAM f INTRON f
3L	14100538	3L_14100538_SNP [dm3] 3L_14107438_SNP [dm6]	T	G	2.627e^-4	0.571	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	2.636e^-4	0.571	DOWNSTREAM CG4525 INTERGENIC
2L	4511886	2L_4511886_SNP [dm3] 2L_4511886_SNP [dm6]	T	A	2.642e^-4	0.571	SPLICE_SITE_REGION dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13041493	3R_13041493_INS [dm3] 3R_17215771_INS [dm6]	A	AC	2.642e^-4	0.571	INTERGENIC
3L	3565033	3L_3565033_SNP [dm3] 3L_3565033_SNP [dm6]	C	T	2.643e^-4	0.571	INTRON Eip63E
2R	12220591	2R_12220591_SNP [dm3] 2R_16333086_SNP [dm6]	C	T	2.646e^-4	0.571	SYNONYMOUS_CODING Vha44	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22727097	3R_22727097_SNP [dm3] 3R_26901375_SNP [dm6]	G	A	2.648e^-4	0.571	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	4714620	3R_4714620_SNP [dm3] 3R_8888898_SNP [dm6]	T	A	2.651e^-4	0.571	INTRON pyd
2L	6386757	2L_6386757_SNP [dm3] 2L_6386757_SNP [dm6]	C	T	2.666e^-4	0.573	INTRON CG42368
2L	16418299	2L_16418299_INS [dm3] 2L_16418299_INS [dm6]	A	ACTGA	2.674e^-4	0.573	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
3L	7548699	3L_7548699_SNP [dm3] 3L_7555599_SNP [dm6]	C	A	2.675e^-4	0.573	DOWNSTREAM CG14837 INTERGENIC
3L	17993701	3L_17993701_SNP [dm3] 3L_18000601_SNP [dm6]	T	C	2.680e^-4	0.573	UPSTREAM Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	21799199	3L_21799199_INS [dm3] 3L_21806099_INS [dm6]	T	TT	2.684e^-4	0.573	INTERGENIC
3L	22030065	3L_22030065_SNP [dm3] 3L_22036965_SNP [dm6]	T	A	2.685e^-4	0.573	INTRON Oct-TyrR	transposable element FlyBase
2L	4443523	2L_4443523_SNP [dm3] 2L_4443523_SNP [dm6]	A	G	2.687e^-4	0.573	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	9840450	3R_9840450_SNP [dm3] 3R_14014728_SNP [dm6]	A	C	2.692e^-4	0.573	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3L	23263036	3L_23263036_SNP [dm3] 3L_23269936_SNP [dm6]	A	G	2.693e^-4	0.573	INTRON nAChRalpha4
3R	18116537	3R_18116537_SNP [dm3] 3R_22290815_SNP [dm6]	C	G	2.693e^-4	0.573	INTRON SKIP
X	8910929	X_8910929_DEL [dm3] X_9016896_DEL [dm6]	TT	T	2.699e^-4	0.573	INTRON CR43836 & 1 other
3L	9741190	3L_9741190_SNP [dm3] 3L_9748090_SNP [dm6]	A	T	2.702e^-4	0.573	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7829897	3L_7829897_SNP [dm3] 3L_7836797_SNP [dm6]	C	G	2.711e^-4	0.573	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	8197105	2R_8197105_SNP [dm3] 2R_12309600_SNP [dm6]	C	T	2.715e^-4	0.573	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12260877	2R_12260877_SNP [dm3] 2R_16373372_SNP [dm6]	A	G	2.722e^-4	0.573	INTERGENIC
3L	18261090	3L_18261090_SNP [dm3] 3L_18267990_SNP [dm6]	T	C	2.723e^-4	0.573	INTERGENIC
2R	6859753	2R_6859753_INS [dm3] 2R_10972248_INS [dm6]	G	TGAA	2.724e^-4	0.573	INTERGENIC	TF binding site mE1_TFBS_inv
3L	23079336	3L_23079336_SNP [dm3] 3L_23086236_SNP [dm6]	C	T	2.728e^-4	0.573	INTERGENIC	transposable element FlyBase
3L	18270151	3L_18270151_DEL [dm3] 3L_18277051_DEL [dm6]	AT	A	2.731e^-4	0.573	INTERGENIC
3R	14040250	3R_14040250_SNP [dm3] 3R_18214528_SNP [dm6]	T	A	2.736e^-4	0.573	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6281762	2L_6281762_SNP [dm3] 2L_6281762_SNP [dm6]	C	T	2.739e^-4	0.573	INTRON Ddr
3L	10861207	3L_10861207_SNP [dm3] 3L_10868107_SNP [dm6]	T	G	2.748e^-4	0.573	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6130299	X_6130299_SNP [dm3] X_6236266_SNP [dm6]	A	G	2.749e^-4	0.573	DOWNSTREAM CG14446 INTERGENIC
2R	4406545	2R_4406545_SNP [dm3] 2R_8519040_SNP [dm6]	C	A	2.751e^-4	0.573	INTRON mtt
3L	18787146	3L_18787146_SNP [dm3] 3L_18794046_SNP [dm6]	C	A	2.755e^-4	0.573	INTRON ftz-f1
2R	14439825	2R_14439825_SNP [dm3] 2R_18552320_SNP [dm6]	T	C	2.758e^-4	0.573	INTERGENIC
X	13271134	X_13271134_INS [dm3] X_13377101_INS [dm6]	G	GG	2.764e^-4	0.573	INTRON CG1640
3L	4676177	3L_4676177_SNP [dm3] 3L_4676177_SNP [dm6]	G	A	2.768e^-4	0.573	INTRON axo
2R	16566258	2R_16566258_SNP [dm3] 2R_20678753_SNP [dm6]	C	T	2.774e^-4	0.573	INTERGENIC
2R	16712921	2R_16712921_SNP [dm3] 2R_20825416_SNP [dm6]	T	G	2.780e^-4	0.573	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad
2L	16868591	2L_16868591_SNP [dm3] 2L_16868591_SNP [dm6]	A	C	2.781e^-4	0.573	UPSTREAM CR31781 INTERGENIC
X	6269828	X_6269828_INS [dm3] X_6375795_INS [dm6]	A	ACAAT	2.783e^-4	0.573	INTERGENIC
X	6269834	X_6269834_DEL [dm3] X_6375801_DEL [dm6]	AAAA	A	2.783e^-4	0.573	INTERGENIC
X	6269859	X_6269859_SNP [dm3] X_6375826_SNP [dm6]	T	C	2.783e^-4	0.573	INTERGENIC
3L	6703265	3L_6703265_SNP [dm3] 3L_6710165_SNP [dm6]	T	A	2.786e^-4	0.573	INTERGENIC
2L	6867134	2L_6867134_SNP [dm3] 2L_6867134_SNP [dm6]	G	C	2.788e^-4	0.573	INTRON Nha1
3L	23237661	3L_23237661_SNP [dm3] 3L_23244561_SNP [dm6]	C	T	2.789e^-4	0.573	INTRON nAChRalpha4
3L	8158049	3L_8158049_SNP [dm3] 3L_8164949_SNP [dm6]	T	G	2.792e^-4	0.573	UPSTREAM CG13675 INTRON CG13675
3R	13091040	3R_13091040_SNP [dm3] 3R_17265318_SNP [dm6]	A	C	2.793e^-4	0.573	UTR_5_PRIME CG44257 UPSTREAM beat-IIb
3R	25542985	3R_25542985_SNP [dm3] 3R_29717263_SNP [dm6]	A	C	2.795e^-4	0.573	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12045735	3R_12045735_SNP [dm3] 3R_16220013_SNP [dm6]	T	C	2.797e^-4	0.573	INTERGENIC
2R	18947448	2R_18947448_SNP [dm3] 2R_23059925_SNP [dm6]	C	T	2.797e^-4	0.573	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11298779	3R_11298779_SNP [dm3] 3R_15473057_SNP [dm6]	G	C	2.800e^-4	0.573	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	1645835	3L_1645835_SNP [dm3] 3L_1645835_SNP [dm6]	G	A	2.803e^-4	0.573	SYNONYMOUS_CODING CG13919 UPSTREAM alphaCOP DOWNSTREAM CG17249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22600069	3R_22600069_SNP [dm3] 3R_26774347_SNP [dm6]	C	G	2.803e^-4	0.573	INTERGENIC
X	21890746	X_21890746_SNP [dm3] X_22488910_SNP [dm6]	A	T	2.806e^-4	0.573	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	14290336	3L_14290336_SNP [dm3] 3L_14297236_SNP [dm6]	T	C	2.811e^-4	0.573	INTRON fz
3L	1651530	3L_1651530_SNP [dm3] 3L_1651530_SNP [dm6]	C	A	2.813e^-4	0.573	UTR_3_PRIME CG7967 DOWNSTREAM CG13920	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3L	2394211	3L_2394211_SNP [dm3] 3L_2394211_SNP [dm6]	G	A	2.815e^-4	0.573	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9133491	3L_9133491_SNP [dm3] 3L_9140391_SNP [dm6]	A	T	2.816e^-4	0.573	NON_SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	458972	3R_458972_SNP [dm3] 3R_4633250_SNP [dm6]	A	C	2.819e^-4	0.573	UTR_3_PRIME 5-HT2A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13278713	3R_13278713_SNP [dm3] 3R_17452991_SNP [dm6]	C	T	2.820e^-4	0.573	INTERGENIC
3L	23882364	3L_23882364_SNP [dm3] 3L_23889264_SNP [dm6]	T	C	2.821e^-4	0.573	NON_SYNONYMOUS_CODING CG40470	TF binding site mE1_TFBS_kn
3R	11866922	3R_11866922_INS [dm3] 3R_16041200_INS [dm6]	T	TTCTT	2.828e^-4	0.574	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	17822573	3R_17822573_SNP [dm3] 3R_21996851_SNP [dm6]	T	C	2.836e^-4	0.575	INTRON Eip93F
3L	18367288	3L_18367288_SNP [dm3] 3L_18374188_SNP [dm6]	C	T	2.838e^-4	0.575	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19082429	2R_19082429_SNP [dm3] 2R_23194906_SNP [dm6]	C	A	2.841e^-4	0.575	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18427424	3R_18427424_SNP [dm3] 3R_22601702_SNP [dm6]	C	T	2.852e^-4	0.576	INTRON Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12139598	2L_12139598_SNP [dm3] 2L_12139598_SNP [dm6]	A	G	2.862e^-4	0.576	INTRON Gr33a
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	2.866e^-4	0.576	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	12549044	2L_12549044_SNP [dm3] 2L_12549044_SNP [dm6]	T	G	2.881e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9319585	2R_9319585_SNP [dm3] 2R_13432080_SNP [dm6]	G	A	2.891e^-4	0.576	UPSTREAM tRNA:I:49Fe & 2 others DOWNSTREAM tRNA:I:49Fc & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
2L	8758545	2L_8758545_SNP [dm3] 2L_8758545_SNP [dm6]	G	C	2.899e^-4	0.576	INTERGENIC
2L	8758719	2L_8758719_SNP [dm3] 2L_8758719_SNP [dm6]	G	A	2.899e^-4	0.576	INTERGENIC
3L	21322374	3L_21322374_INS [dm3] 3L_21329274_INS [dm6]	A	AACTCAA	2.900e^-4	0.576	INTRON Rab26
3R	416196	3R_416196_SNP [dm3] 3R_4590474_SNP [dm6]	T	C	2.903e^-4	0.576	INTERGENIC
2R	18766782	2R_18766782_SNP [dm3] 2R_22879259_SNP [dm6]	G	A	2.910e^-4	0.576	INTRON PIP5K59B	TF binding site mE1_TFBS_chinmo
3R	9865823	3R_9865823_SNP [dm3] 3R_14040101_SNP [dm6]	C	T	2.910e^-4	0.576	INTERGENIC
3R	23221498	3R_23221498_SNP [dm3] 3R_27395776_SNP [dm6]	C	A	2.913e^-4	0.576	INTRON side
X	13182229	X_13182229_SNP [dm3] X_13288196_SNP [dm6]	G	A	2.924e^-4	0.576	UTR_5_PRIME CG15744 DOWNSTREAM CG15743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	15864645	X_15864645_SNP [dm3] X_15970612_SNP [dm6]	C	T	2.926e^-4	0.576	INTRON mmd
3L	3501169	3L_3501169_SNP [dm3] 3L_3501169_SNP [dm6]	C	T	2.928e^-4	0.576	INTRON CG42324
3R	10897110	3R_10897110_SNP [dm3] 3R_15071388_SNP [dm6]	G	C	2.932e^-4	0.576	INTRON dpr9	TF binding site mE1_TFBS_cad
3R	10897112	3R_10897112_INS [dm3] 3R_15071390_INS [dm6]	T	TCTT	2.932e^-4	0.576	INTRON dpr9	TF binding site mE1_TFBS_cad
2L	18467137	2L_18467137_SNP [dm3] 2L_18467137_SNP [dm6]	C	G	2.934e^-4	0.576	INTRON let-7-C
3L	19285883	3L_19285883_SNP [dm3] 3L_19292783_SNP [dm6]	T	C	2.941e^-4	0.576	UPSTREAM Gbs-76A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	10859942	3R_10859942_SNP [dm3] 3R_15034220_SNP [dm6]	T	A	2.942e^-4	0.576	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17780198	2R_17780198_SNP [dm3] 2R_21892693_SNP [dm6]	C	T	2.943e^-4	0.576	INTRON Fili
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	2.944e^-4	0.576	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18985607	2R_18985607_SNP [dm3] 2R_23098084_SNP [dm6]	C	G	2.946e^-4	0.576	INTERGENIC
2L	12470467	2L_12470467_DEL [dm3] 2L_12470467_DEL [dm6]	AA	A	2.953e^-4	0.576	INTRON bun
3R	23221198	3R_23221198_SNP [dm3] 3R_27395476_SNP [dm6]	G	A	2.957e^-4	0.576	INTRON side
3L	15244803	3L_15244803_SNP [dm3] 3L_15251703_SNP [dm6]	T	C	2.962e^-4	0.576	INTERGENIC
2L	5382652	2L_5382652_SNP [dm3] 2L_5382652_SNP [dm6]	G	A	2.964e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4021797	2L_4021797_SNP [dm3] 2L_4021797_SNP [dm6]	G	A	2.965e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_jumu
2L	4871471	2L_4871471_SNP [dm3] 2L_4871471_SNP [dm6]	C	A	2.966e^-4	0.576	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	8541935	2L_8541935_SNP [dm3] 2L_8541935_SNP [dm6]	C	G	2.972e^-4	0.576	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	25986348	3R_25986348_SNP [dm3] 3R_30160626_SNP [dm6]	C	T	2.975e^-4	0.576	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8895152	2R_8895152_SNP [dm3] 2R_13007647_SNP [dm6]	C	A	2.984e^-4	0.576	UTR_3_PRIME Su_z_2
3L	3923763	3L_3923763_SNP [dm3] 3L_3923763_SNP [dm6]	C	T	2.986e^-4	0.576	INTRON Eip63F-1
2R	8992597	2R_8992597_INS [dm3] 2R_13105092_INS [dm6]	A	AGCCACCT	2.986e^-4	0.576	DOWNSTREAM CG44341 INTERGENIC
3L	5668498	3L_5668498_SNP [dm3] 3L_5675398_SNP [dm6]	A	T	2.992e^-4	0.576	INTRON sif
2R	9353680	2R_9353680_SNP [dm3] 2R_13466175_SNP [dm6]	G	A	2.993e^-4	0.576	INTRON arr
3L	14470756	3L_14470756_SNP [dm3] 3L_14477656_SNP [dm6]	A	T	2.997e^-4	0.576	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7365625	2L_7365625_SNP [dm3] 2L_7365625_SNP [dm6]	T	A	2.998e^-4	0.576	INTRON Wnt10
3L	22065489	3L_22065489_SNP [dm3] 3L_22072389_SNP [dm6]	G	A	3.004e^-4	0.576	UPSTREAM CG7139 DOWNSTREAM CG7133 EXON CR43995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15597781	2L_15597781_SNP [dm3] 2L_15597781_SNP [dm6]	C	A	3.004e^-4	0.576	INTERGENIC
X	14763046	X_14763046_SNP [dm3] X_14869013_SNP [dm6]	C	A	3.009e^-4	0.576	INTRON Flo2 & 1 other
3R	17822588	3R_17822588_SNP [dm3] 3R_21996866_SNP [dm6]	G	A	3.012e^-4	0.576	INTRON Eip93F
2R	17315310	2R_17315310_SNP [dm3] 2R_21427805_SNP [dm6]	G	T	3.013e^-4	0.576	INTRON Sdc
2R	16736506	2R_16736506_SNP [dm3] 2R_20849001_SNP [dm6]	A	T	3.015e^-4	0.576	INTRON CG17999
2L	6077103	2L_6077103_DEL [dm3] 2L_6077103_DEL [dm6]	TT	T	3.021e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6308520	3L_6308520_SNP [dm3] 3L_6315420_SNP [dm6]	A	T	3.023e^-4	0.576	INTERGENIC	transposable element FlyBase
X	17155876	X_17155876_SNP [dm3] X_17261843_SNP [dm6]	C	G	3.024e^-4	0.576	UPSTREAM f INTRON f
X	17164736	X_17164736_SNP [dm3] X_17270703_SNP [dm6]	C	T	3.024e^-4	0.576	INTRON f
2R	14439821	2R_14439821_SNP [dm3] 2R_18552316_SNP [dm6]	G	A	3.032e^-4	0.576	INTERGENIC
X	14762953	X_14762953_SNP [dm3] X_14868920_SNP [dm6]	A	C	3.034e^-4	0.576	INTRON Flo2 & 1 other
2L	9010706	2L_9010706_SNP [dm3] 2L_9010706_SNP [dm6]	T	C	3.035e^-4	0.576	NON_SYNONYMOUS_CODING CG9568
2R	11476859	2R_11476859_SNP [dm3] 2R_15589354_SNP [dm6]	C	T	3.037e^-4	0.576	INTERGENIC
3L	15599853	3L_15599853_SNP [dm3] 3L_15606753_SNP [dm6]	C	T	3.037e^-4	0.576	SYNONYMOUS_CODING RhoGAP71E UTR_3_PRIME RhoGAP71E
X	7622553	X_7622553_SNP [dm3] X_7728520_SNP [dm6]	C	T	3.038e^-4	0.576	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7867074	3L_7867074_SNP [dm3] 3L_7873974_SNP [dm6]	A	G	3.040e^-4	0.576	INTRON CG32365
2L	4211388	2L_4211388_SNP [dm3] 2L_4211388_SNP [dm6]	C	T	3.042e^-4	0.576	INTRON ft
3R	23358836	3R_23358836_SNP [dm3] 3R_27533114_SNP [dm6]	C	A	3.046e^-4	0.576	SYNONYMOUS_CODING CG12885	TF binding site mE1_TFBS_chinmo
3L	22970331	3L_22970331_SNP [dm3] 3L_22977231_SNP [dm6]	G	T	3.046e^-4	0.576	INTERGENIC	transposable element FlyBase
3L	2800560	3L_2800560_SNP [dm3] 3L_2800560_SNP [dm6]	G	A	3.047e^-4	0.576	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	23223096	3R_23223096_SNP [dm3] 3R_27397374_SNP [dm6]	G	C	3.049e^-4	0.576	INTRON side
3R	1196490	3R_1196490_SNP [dm3] 3R_5370768_SNP [dm6]	A	G	3.050e^-4	0.576	NON_SYNONYMOUS_CODING CG34277 UTR_3_PRIME CG31542 DOWNSTREAM CG31542	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16702647	3R_16702647_SNP [dm3] 3R_20876925_SNP [dm6]	A	T	3.051e^-4	0.576	UPSTREAM TotZ INTERGENIC
3R	25542972	3R_25542972_SNP [dm3] 3R_29717250_SNP [dm6]	C	T	3.059e^-4	0.576	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12847102	3L_12847102_SNP [dm3] 3L_12854002_SNP [dm6]	T	A	3.059e^-4	0.576	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2L	4457147	2L_4457147_SNP [dm3] 2L_4457147_SNP [dm6]	A	C	3.061e^-4	0.576	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10120492	3L_10120492_SNP [dm3] 3L_10127392_SNP [dm6]	C	G	3.067e^-4	0.576	INTRON dpr6
3R	23628711	3R_23628711_SNP [dm3] 3R_27802989_SNP [dm6]	G	A	3.074e^-4	0.576	INTRON CG34353
2R	8393469	2R_8393469_SNP [dm3] 2R_12505964_SNP [dm6]	A	C	3.074e^-4	0.576	INTRON fdl
2R	18758976	2R_18758976_SNP [dm3] 2R_22871453_SNP [dm6]	C	A	3.075e^-4	0.576	UTR_5_PRIME CG13532 DOWNSTREAM fd59A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15137396	3L_15137396_SNP [dm3] 3L_15144296_SNP [dm6]	C	G	3.076e^-4	0.576	UPSTREAM Pex3 & 1 other DOWNSTREAM CR45397 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2789615	3L_2789615_SNP [dm3] 3L_2789615_SNP [dm6]	C	T	3.080e^-4	0.576	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11874274	X_11874274_SNP [dm3] X_11980241_SNP [dm6]	C	T	3.083e^-4	0.576	INTRON cac
2L	16576869	2L_16576869_SNP [dm3] 2L_16576869_SNP [dm6]	A	T	3.086e^-4	0.576	INTRON CG42389

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.062e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06011

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2808 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	1.255e^-7	0.193	INTRON nwk
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	2.060e^-7	0.193	INTRON nwk
2R	16935169	2R_16935169_SNP [dm3] 2R_21047664_SNP [dm6]	C	T	7.232e^-7	0.43	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7828877	3L_7828877_SNP [dm3] 3L_7835777_SNP [dm6]	A	C	1.375e^-6	0.43	INTRON Pdp1
2R	10628938	2R_10628938_SNP [dm3] 2R_14741433_SNP [dm6]	C	A	1.573e^-6	0.43	INTRON CG12858	TF binding site mE1_TFBS_cad
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	1.717e^-6	0.43	INTRON beat-VI
3L	10846523	3L_10846523_SNP [dm3] 3L_10853423_SNP [dm6]	T	G	2.090e^-6	0.43	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13354165	2L_13354165_SNP [dm3] 2L_13354165_SNP [dm6]	T	A	2.115e^-6	0.43	SYNONYMOUS_CODING CG9395
3R	6369628	3R_6369628_SNP [dm3] 3R_10543906_SNP [dm6]	G	A	2.257e^-6	0.43	INTRON hth
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	2.712e^-6	0.43	INTRON nwk
2R	16735376	2R_16735376_SNP [dm3] 2R_20847871_SNP [dm6]	G	A	2.905e^-6	0.43	DOWNSTREAM CG17999 INTERGENIC
2R	16735375	2R_16735375_SNP [dm3] 2R_20847870_SNP [dm6]	A	G	2.943e^-6	0.43	DOWNSTREAM CG17999 INTERGENIC
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	3.549e^-6	0.43	INTRON Octbeta2R
3L	10846657	3L_10846657_SNP [dm3] 3L_10853557_SNP [dm6]	G	A	3.563e^-6	0.43	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7644127	3R_7644127_SNP [dm3] 3R_11818405_SNP [dm6]	G	T	4.121e^-6	0.43	UPSTREAM CoVa INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
X	4125981	X_4125981_DEL [dm3] X_4231948_DEL [dm6]	TAAACTT	T	4.143e^-6	0.43	INTERGENIC
3R	23732111	3R_23732111_SNP [dm3] 3R_27906389_SNP [dm6]	G	C	4.224e^-6	0.43	UPSTREAM CG34353 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	4.607e^-6	0.43	INTRON nwk
3R	20587758	3R_20587758_SNP [dm3] 3R_24762036_SNP [dm6]	A	G	5.272e^-6	0.43	INTRON AstA	TF binding site mE1_TFBS_cad
3R	7644470	3R_7644470_SNP [dm3] 3R_11818748_SNP [dm6]	T	G	5.401e^-6	0.43	SYNONYMOUS_CODING glo UPSTREAM CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2R	7574102	2R_7574102_SNP [dm3] 2R_11686597_SNP [dm6]	A	T	5.434e^-6	0.43	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	9610339	2L_9610339_SNP [dm3] 2L_9610339_SNP [dm6]	C	T	5.781e^-6	0.43	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
2L	4928598	2L_4928598_SNP [dm3] 2L_4928598_SNP [dm6]	C	T	5.792e^-6	0.43	UPSTREAM hoe1 INTRON hoe1
2L	13991989	2L_13991989_SNP [dm3] 2L_13991989_SNP [dm6]	T	C	5.974e^-6	0.43	INTRON rk
2L	9606514	2L_9606514_SNP [dm3] 2L_9606514_SNP [dm6]	A	G	6.490e^-6	0.43	INTERGENIC	regulatory region REDfly_CRMs
2L	9606539	2L_9606539_SNP [dm3] 2L_9606539_SNP [dm6]	G	T	6.490e^-6	0.43	INTERGENIC	regulatory region REDfly_CRMs
3R	12357815	3R_12357815_SNP [dm3] 3R_16532093_SNP [dm6]	T	G	6.604e^-6	0.43	INTRON CG42342
3R	7644539	3R_7644539_SNP [dm3] 3R_11818817_SNP [dm6]	T	C	6.618e^-6	0.43	SYNONYMOUS_CODING glo UPSTREAM CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	11776362	3L_11776362_SNP [dm3] 3L_11783262_SNP [dm6]	G	A	6.995e^-6	0.43	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13377222	3L_13377222_INS [dm3] 3L_13384122_INS [dm6]	A	AAT	7.353e^-6	0.43	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	22898809	3L_22898809_SNP [dm3] 3L_22905709_SNP [dm6]	C	T	7.571e^-6	0.43	DOWNSTREAM BoYb INTERGENIC
3R	7644114	3R_7644114_SNP [dm3] 3R_11818392_SNP [dm6]	A	G	8.338e^-6	0.43	UPSTREAM CoVa INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3L	8157993	3L_8157993_SNP [dm3] 3L_8164893_SNP [dm6]	T	C	8.446e^-6	0.43	UPSTREAM CG13675 INTRON CG13675
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	8.636e^-6	0.43	INTRON nwk
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	8.636e^-6	0.43	INTRON nwk
3L	18066420	3L_18066420_SNP [dm3] 3L_18073320_SNP [dm6]	T	A	8.656e^-6	0.43	INTRON CG44004
X	4124855	X_4124855_SNP [dm3] X_4230822_SNP [dm6]	C	T	9.570e^-6	0.43	INTERGENIC
2L	9610340	2L_9610340_SNP [dm3] 2L_9610340_SNP [dm6]	T	C	9.600e^-6	0.43	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
2L	9609399	2L_9609399_SNP [dm3] 2L_9609399_SNP [dm6]	C	A	9.624e^-6	0.43	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	9609227	2L_9609227_SNP [dm3] 2L_9609227_SNP [dm6]	C	A	9.731e^-6	0.43	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
2L	9609329	2L_9609329_SNP [dm3] 2L_9609329_SNP [dm6]	A	C	9.731e^-6	0.43	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	8009720	3L_8009720_SNP [dm3] 3L_8016620_SNP [dm6]	T	C	9.832e^-6	0.43	INTRON nmo
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	9.849e^-6	0.43	INTRON nwk
2L	9613929	2L_9613929_SNP [dm3] 2L_9613929_SNP [dm6]	G	A	1.079e^-5	0.46	INTRON Trx-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	14172597	3L_14172597_SNP [dm3] 3L_14179497_SNP [dm6]	C	T	1.175e^-5	0.481	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
X	14324705	X_14324705_SNP [dm3] X_14430672_SNP [dm6]	A	G	1.216e^-5	0.481	INTRON dpr8
3R	25543006	3R_25543006_SNP [dm3] 3R_29717284_SNP [dm6]	A	G	1.332e^-5	0.481	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10179297	2L_10179297_SNP [dm3] 2L_10179297_SNP [dm6]	C	T	1.341e^-5	0.481	INTRON CG44153
3R	11863394	3R_11863394_INS [dm3] 3R_16037672_INS [dm6]	T	TGT	1.375e^-5	0.481	INTRON pnr
2L	9872901	2L_9872901_SNP [dm3] 2L_9872901_SNP [dm6]	G	A	1.391e^-5	0.481	INTRON nAChRalpha6
2L	9873108	2L_9873108_SNP [dm3] 2L_9873108_SNP [dm6]	G	C	1.391e^-5	0.481	INTRON nAChRalpha6
2L	9609006	2L_9609006_INS [dm3] 2L_9609006_INS [dm6]	T	TTCTACGATT	1.391e^-5	0.481	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25542987	3R_25542987_SNP [dm3] 3R_29717265_SNP [dm6]	G	T	1.413e^-5	0.481	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14826134	3R_14826134_SNP [dm3] 3R_19000412_SNP [dm6]	A	C	1.423e^-5	0.481	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9611383	2L_9611383_SNP [dm3] 2L_9611383_SNP [dm6]	T	A	1.435e^-5	0.481	INTRON gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9615480	2L_9615480_SNP [dm3] 2L_9615480_SNP [dm6]	A	T	1.435e^-5	0.481	UPSTREAM GlcAT-S INTRON Trx-2
3R	4762231	3R_4762231_SNP [dm3] 3R_8936509_SNP [dm6]	C	T	1.544e^-5	0.488	NON_SYNONYMOUS_CODING osk
2L	6238737	2L_6238737_SNP [dm3] 2L_6238737_SNP [dm6]	G	T	1.557e^-5	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	9608956	2L_9608956_SNP [dm3] 2L_9608956_SNP [dm6]	G	A	1.568e^-5	0.488	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7828869	3L_7828869_SNP [dm3] 3L_7835769_SNP [dm6]	T	A	1.579e^-5	0.488	INTRON Pdp1
3L	7930430	3L_7930430_SNP [dm3] 3L_7937330_SNP [dm6]	T	C	1.622e^-5	0.488	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13377103	3L_13377103_DEL [dm3] 3L_13384003_DEL [dm6]	AA	A	1.624e^-5	0.488	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	9625953	2L_9625953_SNP [dm3] 2L_9625953_SNP [dm6]	A	G	1.714e^-5	0.488	UPSTREAM CG31882 INTERGENIC
2L	4928671	2L_4928671_SNP [dm3] 2L_4928671_SNP [dm6]	C	T	1.717e^-5	0.488	UPSTREAM hoe1 INTRON hoe1
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	1.772e^-5	0.488	INTRON nwk
2L	14067057	2L_14067057_SNP [dm3] 2L_14067057_SNP [dm6]	T	G	1.813e^-5	0.488	INTRON nAChRalpha5
3R	11861031	3R_11861031_SNP [dm3] 3R_16035309_SNP [dm6]	T	G	1.862e^-5	0.488	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	18066419	3L_18066419_SNP [dm3] 3L_18073319_SNP [dm6]	C	A	1.873e^-5	0.488	INTRON CG44004
3R	8386305	3R_8386305_SNP [dm3] 3R_12560583_SNP [dm6]	G	C	1.878e^-5	0.488	NON_SYNONYMOUS_CODING Octbeta2R
3L	7930365	3L_7930365_SNP [dm3] 3L_7937265_SNP [dm6]	G	T	1.897e^-5	0.488	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9615373	2L_9615373_SNP [dm3] 2L_9615373_SNP [dm6]	C	T	1.927e^-5	0.488	SYNONYMOUS_CODING Trx-2
3L	18066412	3L_18066412_SNP [dm3] 3L_18073312_SNP [dm6]	T	C	1.984e^-5	0.488	INTRON CG44004
3L	3926680	3L_3926680_SNP [dm3] 3L_3926680_SNP [dm6]	C	T	1.991e^-5	0.488	INTRON Eip63F-1
3L	494795	3L_494795_SNP [dm3] 3L_494795_SNP [dm6]	C	G	2.035e^-5	0.488	INTRON klar
2R	10621883	2R_10621883_SNP [dm3] 2R_14734378_SNP [dm6]	C	T	2.059e^-5	0.488	INTERGENIC
2L	4372752	2L_4372752_SNP [dm3] 2L_4372752_SNP [dm6]	G	A	2.186e^-5	0.488	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	12940656	3R_12940656_SNP [dm3] 3R_17114934_SNP [dm6]	C	T	2.198e^-5	0.488	INTRON cher
3R	25542990	3R_25542990_SNP [dm3] 3R_29717268_SNP [dm6]	A	T	2.219e^-5	0.488	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8991557	2R_8991557_SNP [dm3] 2R_13104052_SNP [dm6]	C	T	2.224e^-5	0.488	UTR_5_PRIME CG44341
3L	11776384	3L_11776384_SNP [dm3] 3L_11783284_SNP [dm6]	G	A	2.258e^-5	0.488	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9619369	2L_9619369_SNP [dm3] 2L_9619369_SNP [dm6]	C	A	2.289e^-5	0.488	INTRON GlcAT-S
X	4126062	X_4126062_SNP [dm3] X_4232029_SNP [dm6]	A	T	2.327e^-5	0.488	INTERGENIC
3L	14172763	3L_14172763_SNP [dm3] 3L_14179663_SNP [dm6]	G	A	2.338e^-5	0.488	INTERGENIC	regulatory region REDfly_CRMs
3L	18794982	3L_18794982_SNP [dm3] 3L_18801882_SNP [dm6]	A	G	2.351e^-5	0.488	UPSTREAM ftz-f1 DOWNSTREAM CG14073 INTERGENIC
3R	14786638	3R_14786638_SNP [dm3] 3R_18960916_SNP [dm6]	G	A	2.357e^-5	0.488	INTRON CG42613 & 1 other
2R	9851748	2R_9851748_SNP [dm3] 2R_13964243_SNP [dm6]	T	C	2.367e^-5	0.488	UPSTREAM CG42806 & 1 other INTRON Cp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25542992	3R_25542992_SNP [dm3] 3R_29717270_SNP [dm6]	C	T	2.386e^-5	0.488	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6564182	3L_6564182_SNP [dm3] 3L_6571082_SNP [dm6]	T	G	2.389e^-5	0.488	NON_SYNONYMOUS_CODING jv INTRON CG18769
3R	6508455	3R_6508455_SNP [dm3] 3R_10682733_SNP [dm6]	A	T	2.415e^-5	0.488	EXON CR44230	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25543060	3R_25543060_SNP [dm3] 3R_29717338_SNP [dm6]	C	A	2.497e^-5	0.488	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13124108	3R_13124108_SNP [dm3] 3R_17298386_SNP [dm6]	T	C	2.591e^-5	0.488	INTERGENIC
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	2.603e^-5	0.488	INTRON tok
2R	16722778	2R_16722778_SNP [dm3] 2R_20835273_SNP [dm6]	A	G	2.617e^-5	0.488	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13006416	3L_13006416_SNP [dm3] 3L_13013316_SNP [dm6]	G	A	2.624e^-5	0.488	SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23446863	3L_23446863_SNP [dm3] 3L_23453763_SNP [dm6]	G	C	2.630e^-5	0.488	INTERGENIC	transposable element FlyBase
3R	4760352	3R_4760352_DEL [dm3] 3R_8934630_DEL [dm6]	ATTGCTTATCAA...	A	2.681e^-5	0.488	UPSTREAM osk EXON CR44020	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21470991	3R_21470991_SNP [dm3] 3R_25645269_SNP [dm6]	G	A	2.745e^-5	0.488	INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	9602505	2L_9602505_SNP [dm3] 2L_9602505_SNP [dm6]	G	C	2.752e^-5	0.488	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5590574	3L_5590574_SNP [dm3] 3L_5597474_SNP [dm6]	G	A	2.754e^-5	0.488	DOWNSTREAM CG5150 INTERGENIC
3R	13926655	3R_13926655_DEL [dm3] 3R_18100933_DEL [dm6]	GCTGTCTAGAGTAATATG...	G	2.801e^-5	0.488	INTRON sr
2R	7604548	2R_7604548_SNP [dm3] 2R_11717043_SNP [dm6]	C	A	2.836e^-5	0.488	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7681095	3R_7681095_SNP [dm3] 3R_11855373_SNP [dm6]	G	T	2.864e^-5	0.488	INTRON CG6959
3L	9679633	3L_9679633_SNP [dm3] 3L_9686533_SNP [dm6]	T	C	2.949e^-5	0.488	DOWNSTREAM CG16719 INTRON CG6767
3L	23438518	3L_23438518_SNP [dm3] 3L_23445418_SNP [dm6]	A	C	2.986e^-5	0.488	INTERGENIC
3L	4107967	3L_4107967_SNP [dm3] 3L_4107967_SNP [dm6]	G	A	3.012e^-5	0.488	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4928578	2L_4928578_SNP [dm3] 2L_4928578_SNP [dm6]	C	T	3.058e^-5	0.488	UPSTREAM hoe1 INTRON hoe1
2L	9609410	2L_9609410_SNP [dm3] 2L_9609410_SNP [dm6]	T	C	3.063e^-5	0.488	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	4107852	3L_4107852_SNP [dm3] 3L_4107852_SNP [dm6]	G	T	3.070e^-5	0.488	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13377159	3L_13377159_SNP [dm3] 3L_13384059_SNP [dm6]	C	A	3.082e^-5	0.488	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	10354709	X_10354709_INS [dm3] X_10460676_INS [dm6]	C	CT	3.116e^-5	0.488	UPSTREAM Neb-cGP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6757197	3L_6757197_SNP [dm3] 3L_6764097_SNP [dm6]	A	T	3.169e^-5	0.488	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7125071	2R_7125071_SNP [dm3] 2R_11237566_SNP [dm6]	G	T	3.180e^-5	0.488	SYNONYMOUS_CODING CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13377087	3L_13377087_INS [dm3] 3L_13383987_INS [dm6]	T	TATATT	3.184e^-5	0.488	UTR_3_PRIME ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3R	11866459	3R_11866459_SNP [dm3] 3R_16040737_SNP [dm6]	T	A	3.191e^-5	0.488	UTR_3_PRIME pnr
3L	23326140	3L_23326140_DEL [dm3] 3L_23333040_DEL [dm6]	GAGTATGG	G	3.227e^-5	0.488	INTRON alpha-Cat	transposable element FlyBase
2L	9625870	2L_9625870_SNP [dm3] 2L_9625870_SNP [dm6]	G	A	3.231e^-5	0.488	UPSTREAM CG31882 INTERGENIC
2L	4886659	2L_4886659_SNP [dm3] 2L_4886659_SNP [dm6]	A	T	3.302e^-5	0.488	DOWNSTREAM CG3008 INTERGENIC
3L	22047001	3L_22047001_SNP [dm3] 3L_22053901_SNP [dm6]	T	C	3.318e^-5	0.488	INTRON Oct-TyrR
2R	4142908	2R_4142908_SNP [dm3] 2R_8255403_SNP [dm6]	A	C	3.327e^-5	0.488	NON_SYNONYMOUS_CODING CG14760
3R	14042988	3R_14042988_SNP [dm3] 3R_18217266_SNP [dm6]	T	C	3.333e^-5	0.488	SYNONYMOUS_CODING CG14314 DOWNSTREAM CG7183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11776390	3L_11776390_SNP [dm3] 3L_11783290_SNP [dm6]	C	A	3.379e^-5	0.488	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9625239	2L_9625239_SNP [dm3] 2L_9625239_SNP [dm6]	T	A	3.387e^-5	0.488	UTR_5_PRIME CG31882	TF binding site mE1_TFBS_chinmo
2L	9601903	2L_9601903_SNP [dm3] 2L_9601903_SNP [dm6]	G	T	3.392e^-5	0.488	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8717237	3L_8717237_SNP [dm3] 3L_8724137_SNP [dm6]	C	A	3.431e^-5	0.488	SPLICE_SITE_REGION CG6511 INTRON CG6511
3L	16754495	3L_16754495_SNP [dm3] 3L_16761395_SNP [dm6]	C	T	3.435e^-5	0.488	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	21471636	3R_21471636_SNP [dm3] 3R_25645914_SNP [dm6]	T	A	3.456e^-5	0.488	UPSTREAM mir-92a INTRON jigr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1777044	X_1777044_SNP [dm3] X_1883011_SNP [dm6]	G	A	3.511e^-5	0.488	SYNONYMOUS_CODING trr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18069504	3L_18069504_SNP [dm3] 3L_18076404_SNP [dm6]	C	T	3.549e^-5	0.488	INTERGENIC
2L	9610506	2L_9610506_SNP [dm3] 2L_9610506_SNP [dm6]	A	T	3.595e^-5	0.488	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	23561494	3L_23561494_SNP [dm3] 3L_23568394_SNP [dm6]	G	A	3.607e^-5	0.488	INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6867029	2L_6867029_SNP [dm3] 2L_6867029_SNP [dm6]	T	G	3.608e^-5	0.488	INTRON Nha1
3R	11866461	3R_11866461_DEL [dm3] 3R_16040739_DEL [dm6]	GGTCTT	A	3.641e^-5	0.488	UTR_3_PRIME pnr
3L	11777281	3L_11777281_SNP [dm3] 3L_11784181_SNP [dm6]	G	A	3.691e^-5	0.488	SYNONYMOUS_CODING Pi3K68D
3R	13109171	3R_13109171_SNP [dm3] 3R_17283449_SNP [dm6]	C	G	3.706e^-5	0.488	UPSTREAM CG31418 INTERGENIC
3L	18122084	3L_18122084_SNP [dm3] 3L_18128984_SNP [dm6]	A	T	3.716e^-5	0.488	UTR_3_PRIME Cyp312a1
2L	9601864	2L_9601864_SNP [dm3] 2L_9601864_SNP [dm6]	A	G	3.727e^-5	0.488	UPSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8129642	3R_8129642_SNP [dm3] 3R_12303920_SNP [dm6]	C	T	3.742e^-5	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7801582	3L_7801582_SNP [dm3] 3L_7808482_SNP [dm6]	G	C	3.769e^-5	0.488	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16960099	2R_16960099_SNP [dm3] 2R_21072594_SNP [dm6]	A	G	3.785e^-5	0.488	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
X	12834085	X_12834085_SNP [dm3] X_12940052_SNP [dm6]	T	A	3.796e^-5	0.488	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	16754498	3L_16754498_SNP [dm3] 3L_16761398_SNP [dm6]	G	T	3.851e^-5	0.488	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	10861207	3L_10861207_SNP [dm3] 3L_10868107_SNP [dm6]	T	G	3.860e^-5	0.488	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13926725	3R_13926725_SNP [dm3] 3R_18101003_SNP [dm6]	G	T	3.877e^-5	0.488	INTRON sr
3R	25901375	3R_25901375_SNP [dm3] 3R_30075653_SNP [dm6]	C	T	3.877e^-5	0.488	INTRON sima
3L	20558806	3L_20558806_DEL [dm3] 3L_20565706_DEL [dm6]	GT	G	3.904e^-5	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	18796677	3L_18796677_SNP [dm3] 3L_18803577_SNP [dm6]	T	C	3.909e^-5	0.488	NON_SYNONYMOUS_CODING CG14073
3L	24273577	3L_24273577_INS [dm3] 3L_24280477_INS [dm6]	T	TT	3.929e^-5	0.488	INTRON Snap25
3L	9600557	3L_9600557_SNP [dm3] 3L_9607457_SNP [dm6]	A	C	3.936e^-5	0.488	SYNONYMOUS_CODING CG3280
2R	8991682	2R_8991682_SNP [dm3] 2R_13104177_SNP [dm6]	A	C	3.945e^-5	0.488	NON_SYNONYMOUS_CODING CG44341
3L	14171909	3L_14171909_SNP [dm3] 3L_14178809_SNP [dm6]	G	A	3.946e^-5	0.488	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	18796679	3L_18796679_SNP [dm3] 3L_18803579_SNP [dm6]	C	A	3.968e^-5	0.488	SYNONYMOUS_CODING CG14073
3L	12689471	3L_12689471_SNP [dm3] 3L_12696371_SNP [dm6]	T	A	3.971e^-5	0.488	INTRON mirr	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	18245382	3L_18245382_SNP [dm3] 3L_18252282_SNP [dm6]	G	A	4.001e^-5	0.488	SYNONYMOUS_CODING CheA75a
3R	918436	3R_918436_SNP [dm3] 3R_5092714_SNP [dm6]	C	T	4.009e^-5	0.488	INTERGENIC
3R	7681044	3R_7681044_SNP [dm3] 3R_11855322_SNP [dm6]	C	T	4.047e^-5	0.49	INTRON CG6959
2R	17311370	2R_17311370_SNP [dm3] 2R_21423865_SNP [dm6]	C	T	4.082e^-5	0.491	INTRON Sdc
2R	18938482	2R_18938482_INS [dm3] 2R_23050959_INS [dm6]	A	AA	4.130e^-5	0.493	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8421062	3R_8421062_INS [dm3] 3R_12595340_INS [dm6]	G	AATGTC	4.151e^-5	0.493	INTRON Octbeta2R	TF binding site mE1_TFBS_chinmo
2L	9628118	2L_9628118_SNP [dm3] 2L_9628118_SNP [dm6]	G	T	4.238e^-5	0.498	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6757216	3L_6757216_SNP [dm3] 3L_6764116_SNP [dm6]	A	T	4.252e^-5	0.498	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16967206	2R_16967206_SNP [dm3] 2R_21079701_SNP [dm6]	C	A	4.278e^-5	0.498	UPSTREAM Treh INTRON Treh
3L	12065791	3L_12065791_SNP [dm3] 3L_12072691_SNP [dm6]	G	A	4.316e^-5	0.499	INTRON Sema-5c	TF binding site mE1_TFBS_HSA
2L	5883093	2L_5883093_SNP [dm3] 2L_5883093_SNP [dm6]	A	G	4.361e^-5	0.499	UPSTREAM CG44574 INTERGENIC
3R	25543001	3R_25543001_SNP [dm3] 3R_29717279_SNP [dm6]	G	C	4.371e^-5	0.499	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14798423	3R_14798423_SNP [dm3] 3R_18972701_SNP [dm6]	A	G	4.388e^-5	0.499	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14798429	3R_14798429_SNP [dm3] 3R_18972707_SNP [dm6]	T	G	4.477e^-5	0.505	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18122083	3L_18122083_SNP [dm3] 3L_18128983_SNP [dm6]	T	G	4.520e^-5	0.505	UTR_3_PRIME Cyp312a1
3L	18122093	3L_18122093_MNP [dm3] 3L_18128993_MNP [dm6]	AAC	TTT	4.520e^-5	0.505	UTR_3_PRIME Cyp312a1
3R	10859785	3R_10859785_SNP [dm3] 3R_15034063_SNP [dm6]	G	A	4.557e^-5	0.506	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15644634	3R_15644634_SNP [dm3] 3R_19818912_SNP [dm6]	A	T	4.591e^-5	0.507	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6307099	3L_6307099_SNP [dm3] 3L_6313999_SNP [dm6]	C	T	4.664e^-5	0.512	INTERGENIC
3R	21465818	3R_21465818_SNP [dm3] 3R_25640096_SNP [dm6]	T	A	4.750e^-5	0.517	INTRON jigr1
3R	7645098	3R_7645098_SNP [dm3] 3R_11819376_SNP [dm6]	A	G	4.773e^-5	0.517	UTR_5_PRIME CoVa UPSTREAM CoVa & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20566374	3R_20566374_SNP [dm3] 3R_24740652_SNP [dm6]	T	C	4.810e^-5	0.517	INTRON tok
2L	4928538	2L_4928538_SNP [dm3] 2L_4928538_SNP [dm6]	A	G	4.859e^-5	0.517	UPSTREAM hoe1 INTRON hoe1
2R	18985607	2R_18985607_SNP [dm3] 2R_23098084_SNP [dm6]	C	G	4.877e^-5	0.517	INTERGENIC
3L	7162457	3L_7162457_SNP [dm3] 3L_7169357_SNP [dm6]	C	T	4.895e^-5	0.517	INTRON Dscam2	TF binding site mE1_TFBS_HSA
3R	7653460	3R_7653460_SNP [dm3] 3R_11827738_SNP [dm6]	G	A	4.930e^-5	0.517	INTRON CG6959
3L	15871375	3L_15871375_SNP [dm3] 3L_15878275_SNP [dm6]	C	T	4.947e^-5	0.517	INTRON pHCl
2L	13503418	2L_13503418_SNP [dm3] 2L_13503418_SNP [dm6]	C	G	4.971e^-5	0.517	UTR_3_PRIME B4
2R	8991364	2R_8991364_SNP [dm3] 2R_13103859_SNP [dm6]	C	T	5.010e^-5	0.517	UPSTREAM CG44341 INTERGENIC
3L	7930542	3L_7930542_SNP [dm3] 3L_7937442_SNP [dm6]	T	A	5.035e^-5	0.517	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7604577	2R_7604577_INS [dm3] 2R_11717072_INS [dm6]	T	ATAAATATTTG...	5.047e^-5	0.517	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11861591	3R_11861591_SNP [dm3] 3R_16035869_SNP [dm6]	C	A	5.076e^-5	0.517	INTRON pnr
3L	18122098	3L_18122098_DEL [dm3] 3L_18128998_DEL [dm6]	CTGGTG	C	5.166e^-5	0.517	UTR_3_PRIME Cyp312a1
2L	8628550	2L_8628550_SNP [dm3] 2L_8628550_SNP [dm6]	C	T	5.190e^-5	0.517	INTRON Sema-1a
2R	9322921	2R_9322921_INS [dm3] 2R_13435416_INS [dm6]	A	ATC	5.218e^-5	0.517	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
3L	7828861	3L_7828861_SNP [dm3] 3L_7835761_SNP [dm6]	A	C	5.254e^-5	0.517	INTRON Pdp1
2L	9626057	2L_9626057_SNP [dm3] 2L_9626057_SNP [dm6]	G	A	5.267e^-5	0.517	UPSTREAM CG31882 INTERGENIC
2L	9626082	2L_9626082_SNP [dm3] 2L_9626082_SNP [dm6]	T	G	5.267e^-5	0.517	UPSTREAM CG31882 INTERGENIC
3R	7644038	3R_7644038_SNP [dm3] 3R_11818316_SNP [dm6]	C	T	5.315e^-5	0.517	INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2L	9872848	2L_9872848_SNP [dm3] 2L_9872848_SNP [dm6]	C	T	5.343e^-5	0.517	INTRON nAChRalpha6
3R	8436999	3R_8436999_INS [dm3] 3R_12611277_INS [dm6]	G	GT	5.356e^-5	0.517	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	16733570	2R_16733570_SNP [dm3] 2R_20846065_SNP [dm6]	A	T	5.381e^-5	0.517	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12689414	3L_12689414_SNP [dm3] 3L_12696314_SNP [dm6]	T	A	5.388e^-5	0.517	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23765906	3L_23765906_SNP [dm3] 3L_23772806_SNP [dm6]	C	A	5.434e^-5	0.517	INTERGENIC
3R	7645115	3R_7645115_SNP [dm3] 3R_11819393_SNP [dm6]	A	G	5.501e^-5	0.517	UTR_5_PRIME CoVa UPSTREAM CoVa & 1 other DOWNSTREAM CG6950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14826203	3R_14826203_SNP [dm3] 3R_19000481_SNP [dm6]	T	C	5.532e^-5	0.517	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9514207	X_9514207_SNP [dm3] X_9620174_SNP [dm6]	C	T	5.547e^-5	0.517	INTRON CG42797	TF binding site mE1_TFBS_chinmo
X	9589538	X_9589538_SNP [dm3] X_9695505_SNP [dm6]	T	C	5.563e^-5	0.517	INTRON btd	TF binding site BDTNP1_TFBS_dl
3R	11897665	3R_11897665_SNP [dm3] 3R_16071943_SNP [dm6]	A	C	5.591e^-5	0.517	UTR_5_PRIME Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12417317	3L_12417317_SNP [dm3] 3L_12424217_SNP [dm6]	C	T	5.603e^-5	0.517	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7828182	3L_7828182_SNP [dm3] 3L_7835082_SNP [dm6]	G	C	5.604e^-5	0.517	INTRON Pdp1
3L	14172481	3L_14172481_INS [dm3] 3L_14179381_INS [dm6]	T	TCCAACAGA	5.622e^-5	0.517	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3L	18794980	3L_18794980_SNP [dm3] 3L_18801880_SNP [dm6]	A	G	5.673e^-5	0.518	UPSTREAM ftz-f1 DOWNSTREAM CG14073 INTERGENIC
3L	11776718	3L_11776718_SNP [dm3] 3L_11783618_SNP [dm6]	T	C	5.693e^-5	0.518	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9322942	2R_9322942_SNP [dm3] 2R_13435437_SNP [dm6]	G	A	5.776e^-5	0.523	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
2R	7604587	2R_7604587_SNP [dm3] 2R_11717082_SNP [dm6]	A	G	5.815e^-5	0.524	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22044615	3L_22044615_SNP [dm3] 3L_22051515_SNP [dm6]	C	T	5.932e^-5	0.529	INTRON Oct-TyrR
2L	8542024	2L_8542024_INS [dm3] 2L_8542024_INS [dm6]	A	ATTATGTTCCTTATTA...	5.943e^-5	0.529	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	10354924	X_10354924_SNP [dm3] X_10460891_SNP [dm6]	A	T	5.951e^-5	0.529	DOWNSTREAM nocte INTRON Neb-cGP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	18175039	2R_18175039_SNP [dm3] 2R_22287534_SNP [dm6]	G	A	5.993e^-5	0.53	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10549252	2R_10549252_SNP [dm3] 2R_14661747_SNP [dm6]	G	C	6.068e^-5	0.531	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11606224	X_11606224_SNP [dm3] X_11712191_SNP [dm6]	G	A	6.076e^-5	0.531	SYNONYMOUS_CODING Amun	TF binding site mE1_TFBS_sens
2L	8541908	2L_8541908_SNP [dm3] 2L_8541908_SNP [dm6]	A	G	6.085e^-5	0.531	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	7853818	3L_7853818_SNP [dm3] 3L_7860718_SNP [dm6]	A	T	6.144e^-5	0.531	INTRON Pdp1
3R	26353227	3R_26353227_SNP [dm3] 3R_30527505_SNP [dm6]	C	T	6.168e^-5	0.531	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	7828860	3L_7828860_SNP [dm3] 3L_7835760_SNP [dm6]	T	C	6.172e^-5	0.531	INTRON Pdp1
2L	8541894	2L_8541894_SNP [dm3] 2L_8541894_SNP [dm6]	A	T	6.211e^-5	0.531	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	677500	3R_677500_SNP [dm3] 3R_4851778_SNP [dm6]	A	G	6.253e^-5	0.531	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sbb
3R	11865923	3R_11865923_SNP [dm3] 3R_16040201_SNP [dm6]	G	C	6.258e^-5	0.531	SYNONYMOUS_CODING pnr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16410924	3L_16410924_SNP [dm3] 3L_16417824_SNP [dm6]	G	C	6.315e^-5	0.534	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG4573	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18071280	2L_18071280_SNP [dm3] 2L_18071280_SNP [dm6]	A	G	6.401e^-5	0.538	INTERGENIC	TF binding site mE1_TFBS_inv
X	4292901	X_4292901_SNP [dm3] X_4398868_SNP [dm6]	A	T	6.492e^-5	0.544	INTRON CR32773
3L	14787368	3L_14787368_SNP [dm3] 3L_14794268_SNP [dm6]	C	T	6.741e^-5	0.55	NON_SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14395089	X_14395089_SNP [dm3] X_14501056_SNP [dm6]	A	G	6.749e^-5	0.55	INTERGENIC
X	8911823	X_8911823_SNP [dm3] X_9017790_SNP [dm6]	T	A	6.756e^-5	0.55	INTRON CR43836 & 1 other
2L	13354228	2L_13354228_SNP [dm3] 2L_13354228_SNP [dm6]	G	A	6.758e^-5	0.55	SYNONYMOUS_CODING CG9395
3R	10859939	3R_10859939_SNP [dm3] 3R_15034217_SNP [dm6]	A	T	6.764e^-5	0.55	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3302911	X_3302911_DEL [dm3] X_3408878_DEL [dm6]	AC	G	6.779e^-5	0.55	INTRON CR44999 & 1 other
2L	9622731	2L_9622731_SNP [dm3] 2L_9622731_SNP [dm6]	T	A	6.784e^-5	0.55	UTR_3_PRIME GlcAT-S DOWNSTREAM GlcAT-S
3R	11556293	3R_11556293_SNP [dm3] 3R_15730571_SNP [dm6]	T	C	6.815e^-5	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11607007	X_11607007_SNP [dm3] X_11712974_SNP [dm6]	A	C	6.875e^-5	0.55	SYNONYMOUS_CODING Amun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9624099	2L_9624099_SNP [dm3] 2L_9624099_SNP [dm6]	G	C	6.906e^-5	0.55	DOWNSTREAM GlcAT-S & 1 other INTERGENIC
3R	16515913	3R_16515913_SNP [dm3] 3R_20690191_SNP [dm6]	G	A	6.909e^-5	0.55	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_chinmo
3L	5668780	3L_5668780_SNP [dm3] 3L_5675680_SNP [dm6]	T	A	6.958e^-5	0.55	INTRON sif
3R	11862657	3R_11862657_SNP [dm3] 3R_16036935_SNP [dm6]	A	G	6.978e^-5	0.55	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13709282	2R_13709282_DEL [dm3] 2R_17821777_DEL [dm6]	TAAAGAAAATGTGAAAAGAT...	T	7.013e^-5	0.55	INTRON grh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
3L	6757244	3L_6757244_DEL [dm3] 3L_6764144_DEL [dm6]	TT	T	7.015e^-5	0.55	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10861913	3L_10861913_SNP [dm3] 3L_10868813_SNP [dm6]	G	A	7.065e^-5	0.552	INTRON tna
3L	21343485	3L_21343485_SNP [dm3] 3L_21350385_SNP [dm6]	A	G	7.153e^-5	0.552	SYNONYMOUS_CODING CG32436
3R	17341131	3R_17341131_SNP [dm3] 3R_21515409_SNP [dm6]	A	G	7.179e^-5	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8126432	3R_8126432_SNP [dm3] 3R_12300710_SNP [dm6]	C	A	7.193e^-5	0.552	INTRON svp	TF binding site mE1_TFBS_cad
X	4126368	X_4126368_INS [dm3] X_4232335_INS [dm6]	G	GG	7.205e^-5	0.552	INTERGENIC
3L	6757364	3L_6757364_SNP [dm3] 3L_6764264_SNP [dm6]	A	G	7.230e^-5	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	20587585	3R_20587585_SNP [dm3] 3R_24761863_SNP [dm6]	A	G	7.244e^-5	0.552	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16715533	2R_16715533_SNP [dm3] 2R_20828028_SNP [dm6]	G	A	7.308e^-5	0.553	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad
2L	10959847	2L_10959847_SNP [dm3] 2L_10959847_SNP [dm6]	C	G	7.332e^-5	0.553	INTRON dpr2
2R	15218521	2R_15218521_SNP [dm3] 2R_19331016_SNP [dm6]	T	C	7.340e^-5	0.553	SYNONYMOUS_CODING CG34045 INTRON Rgk1
X	7635590	X_7635590_SNP [dm3] X_7741557_SNP [dm6]	G	A	7.390e^-5	0.554	INTERGENIC
2R	16967125	2R_16967125_SNP [dm3] 2R_21079620_SNP [dm6]	A	G	7.439e^-5	0.556	UPSTREAM Treh INTRON Treh
3R	24605213	3R_24605213_SNP [dm3] 3R_28779491_SNP [dm6]	G	T	7.525e^-5	0.56	INTERGENIC
2L	8541901	2L_8541901_SNP [dm3] 2L_8541901_SNP [dm6]	A	G	7.587e^-5	0.56	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	18796681	3L_18796681_SNP [dm3] 3L_18803581_SNP [dm6]	C	G	7.589e^-5	0.56	NON_SYNONYMOUS_CODING CG14073
3R	11866922	3R_11866922_INS [dm3] 3R_16041200_INS [dm6]	T	TTCTT	7.662e^-5	0.561	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	23395554	3L_23395554_DEL [dm3] 3L_23402454_DEL [dm6]	TGGCGAGCAGCAT...	T	7.671e^-5	0.561	INTERGENIC
2L	9850005	2L_9850005_DEL [dm3] 2L_9850005_DEL [dm6]	GAGTACGTGTGCA...	T	7.724e^-5	0.561	INTRON nAChRalpha6
3L	23323540	3L_23323540_SNP [dm3] 3L_23330440_SNP [dm6]	G	C	7.750e^-5	0.561	INTRON alpha-Cat
3L	15237131	3L_15237131_SNP [dm3] 3L_15244031_SNP [dm6]	A	C	7.763e^-5	0.561	INTERGENIC
3L	16273221	3L_16273221_DEL [dm3] 3L_16280121_DEL [dm6]	ACAAAAGCAACCAACCAACC...	A	7.776e^-5	0.561	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
3R	8136672	3R_8136672_SNP [dm3] 3R_12310950_SNP [dm6]	C	G	7.811e^-5	0.561	UPSTREAM CG4066 INTERGENIC
3R	13370501	3R_13370501_SNP [dm3] 3R_17544779_SNP [dm6]	C	T	7.845e^-5	0.562	SYNONYMOUS_CODING SF1 UTR_3_PRIME SF1 DOWNSTREAM Prx3
3R	5754253	3R_5754253_SNP [dm3] 3R_9928531_SNP [dm6]	A	G	7.953e^-5	0.567	UPSTREAM Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14787151	3L_14787151_SNP [dm3] 3L_14794051_SNP [dm6]	C	G	8.040e^-5	0.568	NON_SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7801575	3L_7801575_SNP [dm3] 3L_7808475_SNP [dm6]	C	T	8.167e^-5	0.568	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6757231	3L_6757231_SNP [dm3] 3L_6764131_SNP [dm6]	T	G	8.178e^-5	0.568	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8443191	3R_8443191_SNP [dm3] 3R_12617469_SNP [dm6]	C	T	8.204e^-5	0.568	INTERGENIC
3R	13880626	3R_13880626_SNP [dm3] 3R_18054904_SNP [dm6]	G	A	8.265e^-5	0.568	INTERGENIC
2L	9616758	2L_9616758_SNP [dm3] 2L_9616758_SNP [dm6]	A	C	8.295e^-5	0.568	UPSTREAM GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6842608	3L_6842608_SNP [dm3] 3L_6849508_SNP [dm6]	C	T	8.361e^-5	0.568	INTERGENIC
3L	3489903	3L_3489903_SNP [dm3] 3L_3489903_SNP [dm6]	T	A	8.464e^-5	0.568	INTRON CG42324
3R	6779241	3R_6779241_SNP [dm3] 3R_10953519_SNP [dm6]	A	G	8.480e^-5	0.568	INTERGENIC
2L	9622514	2L_9622514_SNP [dm3] 2L_9622514_SNP [dm6]	G	T	8.487e^-5	0.568	UTR_3_PRIME GlcAT-S
3R	11959213	3R_11959213_SNP [dm3] 3R_16133491_SNP [dm6]	C	T	8.495e^-5	0.568	INTRON Sb
3R	8370481	3R_8370481_SNP [dm3] 3R_12544759_SNP [dm6]	G	C	8.503e^-5	0.568	INTRON Octbeta3R
3R	13206290	3R_13206290_SNP [dm3] 3R_17380568_SNP [dm6]	G	A	8.505e^-5	0.568	INTRON Brf & 1 other
2R	4544732	2R_4544732_SNP [dm3] 2R_8657227_SNP [dm6]	T	C	8.524e^-5	0.568	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6913835	3R_6913835_SNP [dm3] 3R_11088113_SNP [dm6]	G	T	8.532e^-5	0.568	UPSTREAM CG43449 INTERGENIC	TF binding site mE1_TFBS_inv
2L	6761265	2L_6761265_SNP [dm3] 2L_6761265_SNP [dm6]	G	C	8.533e^-5	0.568	SYNONYMOUS_CODING CG11321	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10995362	2R_10995362_SNP [dm3] 2R_15107857_SNP [dm6]	C	T	8.548e^-5	0.568	INTERGENIC
3L	21394651	3L_21394651_SNP [dm3] 3L_21401551_SNP [dm6]	G	A	8.567e^-5	0.568	INTRON rgn
3L	23394468	3L_23394468_SNP [dm3] 3L_23401368_SNP [dm6]	C	T	8.603e^-5	0.568	INTERGENIC
X	13184020	X_13184020_SNP [dm3] X_13289987_SNP [dm6]	T	G	8.683e^-5	0.568	SYNONYMOUS_CODING CG15744	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	5985247	3L_5985247_SNP [dm3] 3L_5992147_SNP [dm6]	C	A	8.739e^-5	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3302936	X_3302936_SNP [dm3] X_3408903_SNP [dm6]	T	A	8.754e^-5	0.568	INTRON CR44999 & 1 other
3R	13438776	3R_13438776_SNP [dm3] 3R_17613054_SNP [dm6]	A	C	8.818e^-5	0.568	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3L	18796859	3L_18796859_SNP [dm3] 3L_18803759_SNP [dm6]	C	T	8.842e^-5	0.568	INTRON CG14073
3R	11862687	3R_11862687_SNP [dm3] 3R_16036965_SNP [dm6]	T	G	8.842e^-5	0.568	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10856748	3R_10856748_SNP [dm3] 3R_15031026_SNP [dm6]	G	C	8.902e^-5	0.568	INTERGENIC
3R	11603420	3R_11603420_SNP [dm3] 3R_15777698_SNP [dm6]	A	T	8.917e^-5	0.568	DOWNSTREAM CG4525 INTERGENIC
2R	18947334	2R_18947334_SNP [dm3] 2R_23059811_SNP [dm6]	G	A	8.934e^-5	0.568	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14006024	3R_14006024_SNP [dm3] 3R_18180302_SNP [dm6]	A	G	8.955e^-5	0.568	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
2L	12651687	2L_12651687_SNP [dm3] 2L_12651687_SNP [dm6]	G	C	8.974e^-5	0.568	INTERGENIC
2L	9628232	2L_9628232_SNP [dm3] 2L_9628232_SNP [dm6]	A	C	8.996e^-5	0.568	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8744941	X_8744941_INS [dm3] X_8850908_INS [dm6]	G	GCTG	9.023e^-5	0.568	INTRON CG12075
2R	15814831	2R_15814831_SNP [dm3] 2R_19927326_SNP [dm6]	A	G	9.039e^-5	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9188127	3R_9188127_SNP [dm3] 3R_13362405_SNP [dm6]	C	T	9.066e^-5	0.568	SYNONYMOUS_CODING poly	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9618763	2L_9618763_SNP [dm3] 2L_9618763_SNP [dm6]	C	T	9.076e^-5	0.568	INTRON GlcAT-S
3R	7681156	3R_7681156_SNP [dm3] 3R_11855434_SNP [dm6]	T	C	9.084e^-5	0.568	INTRON CG6959
3R	8369730	3R_8369730_SNP [dm3] 3R_12544008_SNP [dm6]	G	A	9.119e^-5	0.568	INTRON Octbeta3R
2R	17614527	2R_17614527_SNP [dm3] 2R_21727022_SNP [dm6]	C	T	9.149e^-5	0.568	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3R	20587785	3R_20587785_SNP [dm3] 3R_24762063_SNP [dm6]	A	G	9.183e^-5	0.568	INTRON AstA
3R	728324	3R_728324_SNP [dm3] 3R_4902602_SNP [dm6]	C	T	9.206e^-5	0.568	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15864645	X_15864645_SNP [dm3] X_15970612_SNP [dm6]	C	T	9.210e^-5	0.568	INTRON mmd
X	4126093	X_4126093_SNP [dm3] X_4232060_SNP [dm6]	T	A	9.247e^-5	0.569	INTERGENIC
3L	5590595	3L_5590595_SNP [dm3] 3L_5597495_SNP [dm6]	T	G	9.279e^-5	0.569	DOWNSTREAM CG5150 INTERGENIC
X	13181881	X_13181881_SNP [dm3] X_13287848_SNP [dm6]	G	T	9.326e^-5	0.57	UPSTREAM CG15744 DOWNSTREAM CG15743 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	8542472	2L_8542472_SNP [dm3] 2L_8542472_SNP [dm6]	T	A	9.391e^-5	0.571	UPSTREAM tRNA:CR31604 & 1 other DOWNSTREAM tRNA:CR31603 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	23315613	3L_23315613_SNP [dm3] 3L_23322513_SNP [dm6]	G	A	9.414e^-5	0.571	INTRON alpha-Cat	transposable element FlyBase
3L	7828769	3L_7828769_SNP [dm3] 3L_7835669_SNP [dm6]	G	A	9.448e^-5	0.572	INTRON Pdp1
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	9.528e^-5	0.574	INTRON jigr1
3R	8372300	3R_8372300_SNP [dm3] 3R_12546578_SNP [dm6]	A	G	9.547e^-5	0.574	INTRON Octbeta3R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7678301	3R_7678301_SNP [dm3] 3R_11852579_SNP [dm6]	A	T	9.616e^-5	0.575	INTRON CG6959
3R	22769515	3R_22769515_SNP [dm3] 3R_26943793_SNP [dm6]	A	G	9.635e^-5	0.575	INTRON sda
2L	3926352	2L_3926352_INS [dm3] 2L_3926352_INS [dm6]	C	CA	9.688e^-5	0.577	INTRON fred	TF binding site mE1_TFBS_bab1
2L	17509405	2L_17509405_SNP [dm3] 2L_17509405_SNP [dm6]	C	A	9.744e^-5	0.578	SYNONYMOUS_CODING Dhc36C
3L	6309523	3L_6309523_SNP [dm3] 3L_6316423_SNP [dm6]	G	A	9.769e^-5	0.578	INTERGENIC	regulatory region REDfly_CRMs
3L	18789603	3L_18789603_SNP [dm3] 3L_18796503_SNP [dm6]	G	T	9.808e^-5	0.578	INTRON ftz-f1
2L	9621833	2L_9621833_SNP [dm3] 2L_9621833_SNP [dm6]	C	T	9.901e^-5	0.58	INTRON GlcAT-S
3L	11776952	3L_11776952_SNP [dm3] 3L_11783852_SNP [dm6]	C	T	9.932e^-5	0.58	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15244870	3L_15244870_SNP [dm3] 3L_15251770_SNP [dm6]	T	G	9.960e^-5	0.58	INTERGENIC
X	14133788	X_14133788_SNP [dm3] X_14239755_SNP [dm6]	T	C	9.961e^-5	0.58	SYNONYMOUS_CODING CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12689417	3L_12689417_SNP [dm3] 3L_12696317_SNP [dm6]	C	T	1.007e^-4	0.58	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9852819	X_9852819_SNP [dm3] X_9958786_SNP [dm6]	C	T	1.011e^-4	0.58	INTERGENIC
3R	7645183	3R_7645183_SNP [dm3] 3R_11819461_SNP [dm6]	G	A	1.012e^-4	0.58	UPSTREAM CoVa & 1 other DOWNSTREAM CG6950 INTRON CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21277048	3L_21277048_SNP [dm3] 3L_21283948_SNP [dm6]	G	T	1.016e^-4	0.58	INTRON CG12974
3L	7932719	3L_7932719_SNP [dm3] 3L_7939619_SNP [dm6]	G	T	1.016e^-4	0.58	INTERGENIC
2L	9605344	2L_9605344_SNP [dm3] 2L_9605344_SNP [dm6]	A	C	1.021e^-4	0.58	INTERGENIC	regulatory region REDfly_CRMs
3R	18858789	3R_18858789_SNP [dm3] 3R_23033067_SNP [dm6]	G	A	1.027e^-4	0.58	DOWNSTREAM CG13833 INTERGENIC
X	1573717	X_1573717_SNP [dm3] X_1679684_SNP [dm6]	G	A	1.029e^-4	0.58	DOWNSTREAM CG32809 INTRON CG32809
3R	20587728	3R_20587728_SNP [dm3] 3R_24762006_SNP [dm6]	C	T	1.041e^-4	0.58	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16709853	2R_16709853_SNP [dm3] 2R_20822348_SNP [dm6]	A	C	1.043e^-4	0.58	NON_SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_chinmo
3R	8376454	3R_8376454_SNP [dm3] 3R_12550732_SNP [dm6]	T	G	1.043e^-4	0.58	UTR_3_PRIME Octbeta2R DOWNSTREAM mir-284
2L	8271547	2L_8271547_DEL [dm3] 2L_8271547_DEL [dm6]	ATT	A	1.043e^-4	0.58	INTRON Btk29A
3L	12845227	3L_12845227_SNP [dm3] 3L_12852127_SNP [dm6]	A	G	1.044e^-4	0.58	DOWNSTREAM Wbp2 INTRON Wbp2
3R	16702647	3R_16702647_SNP [dm3] 3R_20876925_SNP [dm6]	A	T	1.046e^-4	0.58	UPSTREAM TotZ INTERGENIC
3L	23323732	3L_23323732_SNP [dm3] 3L_23330632_SNP [dm6]	C	A	1.049e^-4	0.58	INTRON alpha-Cat
2R	14438135	2R_14438135_DEL [dm3] 2R_18550630_DEL [dm6]	ACCAATGTTCTGAAATTTAA...	A	1.052e^-4	0.58	INTERGENIC
3L	3982044	3L_3982044_SNP [dm3] 3L_3982044_SNP [dm6]	A	G	1.053e^-4	0.58	INTERGENIC	regulatory region REDfly_CRMs
3L	21269082	3L_21269082_SNP [dm3] 3L_21275982_SNP [dm6]	T	A	1.058e^-4	0.58	INTRON AcCoAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3L	10140327	3L_10140327_SNP [dm3] 3L_10147227_SNP [dm6]	A	T	1.060e^-4	0.58	DOWNSTREAM dpr10 INTERGENIC
2R	12220591	2R_12220591_SNP [dm3] 2R_16333086_SNP [dm6]	C	T	1.065e^-4	0.58	SYNONYMOUS_CODING Vha44	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9601895	2L_9601895_DEL [dm3] 2L_9601895_DEL [dm6]	ACATA	A	1.071e^-4	0.58	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8541935	2L_8541935_SNP [dm3] 2L_8541935_SNP [dm6]	C	G	1.077e^-4	0.58	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	23447453	3L_23447453_SNP [dm3] 3L_23454353_SNP [dm6]	C	G	1.078e^-4	0.58	INTERGENIC
X	4124382	X_4124382_SNP [dm3] X_4230349_SNP [dm6]	G	A	1.078e^-4	0.58	INTERGENIC
3L	4107958	3L_4107958_SNP [dm3] 3L_4107958_SNP [dm6]	T	A	1.080e^-4	0.58	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21451631	X_21451631_SNP [dm3] X_21580604_SNP [dm6]	A	C	1.085e^-4	0.58	INTERGENIC
2L	9618772	2L_9618772_SNP [dm3] 2L_9618772_SNP [dm6]	G	C	1.088e^-4	0.58	INTRON GlcAT-S
2L	9622172	2L_9622172_SNP [dm3] 2L_9622172_SNP [dm6]	T	C	1.088e^-4	0.58	SYNONYMOUS_CODING GlcAT-S
2L	7184623	2L_7184623_SNP [dm3] 2L_7184623_SNP [dm6]	C	T	1.089e^-4	0.58	SYNONYMOUS_CODING CG4495 DOWNSTREAM CG4496
2L	2081978	2L_2081978_SNP [dm3] 2L_2081978_SNP [dm6]	C	T	1.090e^-4	0.58	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9557521	3L_9557521_SNP [dm3] 3L_9564421_SNP [dm6]	G	T	1.096e^-4	0.58	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10357880	3L_10357880_SNP [dm3] 3L_10364780_SNP [dm6]	G	C	1.097e^-4	0.58	UPSTREAM mir-276a EXON CR44327
3R	15672020	3R_15672020_SNP [dm3] 3R_19846298_SNP [dm6]	C	T	1.102e^-4	0.58	INTERGENIC
2L	6458924	2L_6458924_SNP [dm3] 2L_6458924_SNP [dm6]	G	A	1.104e^-4	0.58	UTR_3_PRIME frj DOWNSTREAM CG16947
3L	9540700	3L_9540700_SNP [dm3] 3L_9547600_SNP [dm6]	G	C	1.105e^-4	0.58	INTRON CG42673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6590233	2R_6590233_INS [dm3] 2R_10702728_INS [dm6]	T	TGTCT	1.110e^-4	0.58	INTRON stan
3L	7548699	3L_7548699_SNP [dm3] 3L_7555599_SNP [dm6]	C	A	1.111e^-4	0.58	DOWNSTREAM CG14837 INTERGENIC
3L	23689575	3L_23689575_SNP [dm3] 3L_23696475_SNP [dm6]	G	A	1.123e^-4	0.585	INTERGENIC	transposable element FlyBase
3R	14040250	3R_14040250_SNP [dm3] 3R_18214528_SNP [dm6]	T	A	1.126e^-4	0.585	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6253697	2L_6253697_SNP [dm3] 2L_6253697_SNP [dm6]	C	T	1.130e^-4	0.586	INTRON Ddr	TF binding site mE1_TFBS_Trl
2L	3276132	2L_3276132_SNP [dm3] 2L_3276132_SNP [dm6]	T	G	1.144e^-4	0.588	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3735389	3R_3735389_DEL [dm3] 3R_7909667_DEL [dm6]	CAA	C	1.150e^-4	0.588	UTR_3_PRIME Taf7 & 1 other DOWNSTREAM Taf7
3R	6257443	3R_6257443_SNP [dm3] 3R_10431721_SNP [dm6]	A	C	1.153e^-4	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8443766	3R_8443766_SNP [dm3] 3R_12618044_SNP [dm6]	C	A	1.156e^-4	0.588	DOWNSTREAM CR44942 INTERGENIC
3L	12689420	3L_12689420_SNP [dm3] 3L_12696320_SNP [dm6]	G	A	1.159e^-4	0.588	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23237683	3L_23237683_SNP [dm3] 3L_23244583_SNP [dm6]	T	A	1.160e^-4	0.588	INTRON nAChRalpha4
X	9312604	X_9312604_SNP [dm3] X_9418571_SNP [dm6]	T	C	1.164e^-4	0.588	INTRON mgl
3R	9822292	3R_9822292_SNP [dm3] 3R_13996570_SNP [dm6]	T	C	1.168e^-4	0.588	INTRON rdx
3L	7987364	3L_7987364_SNP [dm3] 3L_7994264_SNP [dm6]	A	G	1.170e^-4	0.588	INTRON nmo	TF binding site mE1_TFBS_cad
3R	8370217	3R_8370217_SNP [dm3] 3R_12544495_SNP [dm6]	T	G	1.174e^-4	0.588	INTRON Octbeta3R
3R	11294941	3R_11294941_SNP [dm3] 3R_15469219_SNP [dm6]	C	A	1.174e^-4	0.588	INTRON AdamTS-A
3R	6382386	3R_6382386_SNP [dm3] 3R_10556664_SNP [dm6]	C	T	1.181e^-4	0.588	INTRON hth
3L	2810106	3L_2810106_SNP [dm3] 3L_2810106_SNP [dm6]	G	T	1.189e^-4	0.588	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	23272530	3L_23272530_SNP [dm3] 3L_23279430_SNP [dm6]	T	G	1.193e^-4	0.588	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd transposable element FlyBase
2L	15597781	2L_15597781_SNP [dm3] 2L_15597781_SNP [dm6]	C	A	1.195e^-4	0.588	INTERGENIC
3L	6756934	3L_6756934_SNP [dm3] 3L_6763834_SNP [dm6]	G	T	1.197e^-4	0.588	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	13125097	3R_13125097_SNP [dm3] 3R_17299375_SNP [dm6]	A	T	1.197e^-4	0.588	INTERGENIC
X	7622376	X_7622376_INS [dm3] X_7728343_INS [dm6]	T	TT	1.198e^-4	0.588	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	6152586	X_6152586_SNP [dm3] X_6258553_SNP [dm6]	A	C	1.207e^-4	0.588	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
2R	16711729	2R_16711729_SNP [dm3] 2R_20824224_SNP [dm6]	G	A	1.208e^-4	0.588	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17542604	2L_17542604_SNP [dm3] 2L_17542604_SNP [dm6]	G	A	1.213e^-4	0.588	DOWNSTREAM CR43304 INTERGENIC
2R	10471432	2R_10471432_SNP [dm3] 2R_14583927_SNP [dm6]	A	G	1.214e^-4	0.588	SYNONYMOUS_CODING ttv	TF binding site mE1_TFBS_cad
3R	5757326	3R_5757326_SNP [dm3] 3R_9931604_SNP [dm6]	C	T	1.228e^-4	0.588	INTRON Glut4EF
3R	10854434	3R_10854434_SNP [dm3] 3R_15028712_SNP [dm6]	G	A	1.230e^-4	0.588	INTERGENIC
3R	743966	3R_743966_SNP [dm3] 3R_4918244_SNP [dm6]	C	G	1.236e^-4	0.588	INTRON Cdep
2R	8898205	2R_8898205_SNP [dm3] 2R_13010700_SNP [dm6]	C	A	1.238e^-4	0.588	INTERGENIC
3L	12379676	3L_12379676_SNP [dm3] 3L_12386576_SNP [dm6]	G	T	1.238e^-4	0.588	INTRON Ncc69	TF binding site mE1_TFBS_cnc
2R	15047156	2R_15047156_SNP [dm3] 2R_19159651_SNP [dm6]	T	C	1.242e^-4	0.588	INTRON ena
3L	16655330	3L_16655330_SNP [dm3] 3L_16662230_SNP [dm6]	T	G	1.242e^-4	0.588	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25086418	3R_25086418_SNP [dm3] 3R_29260696_SNP [dm6]	G	T	1.245e^-4	0.588	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	5236888	3R_5236888_SNP [dm3] 3R_9411166_SNP [dm6]	C	T	1.250e^-4	0.588	SYNONYMOUS_CODING Task7 UPSTREAM betaTub85D
3L	13252513	3L_13252513_SNP [dm3] 3L_13259413_SNP [dm6]	C	G	1.251e^-4	0.588	INTRON caps
3R	13235751	3R_13235751_SNP [dm3] 3R_17410029_SNP [dm6]	G	A	1.254e^-4	0.588	SYNONYMOUS_CODING CG5860 DOWNSTREAM CG17283
3R	13236417	3R_13236417_SNP [dm3] 3R_17410695_SNP [dm6]	T	C	1.254e^-4	0.588	SYNONYMOUS_CODING CG5860 UPSTREAM CG5863
3R	25535667	3R_25535667_SNP [dm3] 3R_29709945_SNP [dm6]	G	T	1.254e^-4	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9633607	3R_9633607_SNP [dm3] 3R_13807885_SNP [dm6]	A	T	1.254e^-4	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16756238	2R_16756238_SNP [dm3] 2R_20868733_SNP [dm6]	A	G	1.256e^-4	0.588	UTR_3_PRIME IM4 DOWNSTREAM IM4
2L	14334153	2L_14334153_SNP [dm3] 2L_14334153_SNP [dm6]	T	A	1.259e^-4	0.588	UPSTREAM CG33090 DOWNSTREAM ms_2_34Fe INTERGENIC
2R	16960330	2R_16960330_SNP [dm3] 2R_21072825_SNP [dm6]	T	A	1.261e^-4	0.588	UPSTREAM CG10527 DOWNSTREAM CR44704 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12276055	2R_12276055_SNP [dm3] 2R_16388550_SNP [dm6]	A	T	1.265e^-4	0.588	INTRON Sema-2b
2R	19654842	2R_19654842_SNP [dm3] 2R_23767319_SNP [dm6]	C	T	1.266e^-4	0.588	INTRON CG9850
3R	20566318	3R_20566318_SNP [dm3] 3R_24740596_SNP [dm6]	G	C	1.270e^-4	0.588	INTRON tok
2R	6859753	2R_6859753_INS [dm3] 2R_10972248_INS [dm6]	G	TGAA	1.271e^-4	0.588	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9903783	3R_9903783_SNP [dm3] 3R_14078061_SNP [dm6]	A	G	1.273e^-4	0.588	INTRON foxo
3L	16748316	3L_16748316_SNP [dm3] 3L_16755216_SNP [dm6]	C	A	1.289e^-4	0.593	UPSTREAM CG42852 INTERGENIC
3L	19555841	3L_19555841_SNP [dm3] 3L_19562741_SNP [dm6]	G	T	1.296e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16998842	3R_16998842_SNP [dm3] 3R_21173120_SNP [dm6]	C	T	1.297e^-4	0.593	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
X	16935282	X_16935282_SNP [dm3] X_17041249_SNP [dm6]	T	C	1.298e^-4	0.593	INTRON CG45002
2R	12221962	2R_12221962_SNP [dm3] 2R_16334457_SNP [dm6]	T	C	1.304e^-4	0.593	UPSTREAM Vha44 INTRON Vha44
X	9312585	X_9312585_DEL [dm3] X_9418552_DEL [dm6]	GTGGTGGGGGATGG...	G	1.306e^-4	0.593	INTRON mgl
2R	14438188	2R_14438188_SNP [dm3] 2R_18550683_SNP [dm6]	A	G	1.306e^-4	0.593	INTERGENIC
3L	14511662	3L_14511662_SNP [dm3] 3L_14518562_SNP [dm6]	G	C	1.309e^-4	0.593	DOWNSTREAM CG9592 INTRON bbg
3R	21465759	3R_21465759_SNP [dm3] 3R_25640037_SNP [dm6]	T	A	1.315e^-4	0.593	INTRON jigr1
3L	19213190	3L_19213190_DEL [dm3] 3L_19220090_DEL [dm6]	TCTTTCGCGCAACAGA...	T	1.320e^-4	0.593	INTRON fz2
2R	18027999	2R_18027999_SNP [dm3] 2R_22140494_SNP [dm6]	T	C	1.322e^-4	0.593	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
2L	16396486	2L_16396486_SNP [dm3] 2L_16396486_SNP [dm6]	G	A	1.325e^-4	0.593	INTERGENIC
2R	16735039	2R_16735039_SNP [dm3] 2R_20847534_SNP [dm6]	G	A	1.325e^-4	0.593	DOWNSTREAM CG17999 INTERGENIC
3L	18245727	3L_18245727_SNP [dm3] 3L_18252627_SNP [dm6]	T	C	1.331e^-4	0.594	SYNONYMOUS_CODING CheA75a
3L	7829897	3L_7829897_SNP [dm3] 3L_7836797_SNP [dm6]	C	G	1.337e^-4	0.596	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
X	11606912	X_11606912_INS [dm3] X_11712879_INS [dm6]	G	GCAG	1.348e^-4	0.596	CODON_INSERTION Amun	TF binding site BDTNP1_TFBS_dl
3R	14798430	3R_14798430_SNP [dm3] 3R_18972708_SNP [dm6]	G	T	1.348e^-4	0.596	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16563554	2R_16563554_SNP [dm3] 2R_20676049_SNP [dm6]	A	T	1.352e^-4	0.596	INTERGENIC
2R	12082069	2R_12082069_SNP [dm3] 2R_16194564_SNP [dm6]	G	A	1.355e^-4	0.596	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad
3L	22031386	3L_22031386_SNP [dm3] 3L_22038286_SNP [dm6]	G	A	1.356e^-4	0.596	INTRON Oct-TyrR
3L	8935922	3L_8935922_SNP [dm3] 3L_8942822_SNP [dm6]	T	C	1.357e^-4	0.596	UTR_3_PRIME orb2 INTRON CG43783	TF binding site mE1_TFBS_cad
2R	15047157	2R_15047157_SNP [dm3] 2R_19159652_SNP [dm6]	G	A	1.365e^-4	0.597	INTRON ena
3L	23497091	3L_23497091_SNP [dm3] 3L_23503991_SNP [dm6]	T	G	1.368e^-4	0.597	INTERGENIC
3L	18069015	3L_18069015_SNP [dm3] 3L_18075915_SNP [dm6]	C	A	1.369e^-4	0.597	UPSTREAM CR45391 INTERGENIC
3L	7444454	3L_7444454_DEL [dm3] 3L_7451354_DEL [dm6]	AGCA	A	1.378e^-4	0.598	CODON_DELETION CG33278 INTRON CG42458	TF binding site mE1_TFBS_chinmo
2R	15047121	2R_15047121_SNP [dm3] 2R_19159616_SNP [dm6]	T	C	1.380e^-4	0.598	INTRON ena
3R	8384611	3R_8384611_SNP [dm3] 3R_12558889_SNP [dm6]	C	T	1.382e^-4	0.598	INTRON Octbeta2R
2R	13657853	2R_13657853_SNP [dm3] 2R_17770348_SNP [dm6]	G	T	1.386e^-4	0.598	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	18069323	3L_18069323_SNP [dm3] 3L_18076223_SNP [dm6]	C	A	1.388e^-4	0.598	INTERGENIC
3L	18840103	3L_18840103_SNP [dm3] 3L_18847003_SNP [dm6]	C	T	1.392e^-4	0.598	UPSTREAM Indy INTERGENIC
2R	19961265	2R_19961265_SNP [dm3] 2R_24073742_SNP [dm6]	G	T	1.393e^-4	0.598	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
2L	9616741	2L_9616741_SNP [dm3] 2L_9616741_SNP [dm6]	C	A	1.400e^-4	0.598	UPSTREAM GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18685308	3L_18685308_SNP [dm3] 3L_18692208_SNP [dm6]	A	G	1.400e^-4	0.598	INTERGENIC
3L	9741190	3L_9741190_SNP [dm3] 3L_9748090_SNP [dm6]	A	T	1.405e^-4	0.599	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10859942	3R_10859942_SNP [dm3] 3R_15034220_SNP [dm6]	T	A	1.410e^-4	0.599	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8541840	2L_8541840_SNP [dm3] 2L_8541840_SNP [dm6]	A	T	1.411e^-4	0.599	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4107951	3L_4107951_SNP [dm3] 3L_4107951_SNP [dm6]	T	C	1.415e^-4	0.599	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12951339	3R_12951339_SNP [dm3] 3R_17125617_SNP [dm6]	G	A	1.419e^-4	0.599	UPSTREAM cher DOWNSTREAM CG45079 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	7832068	3L_7832068_SNP [dm3] 3L_7838968_SNP [dm6]	C	G	1.426e^-4	0.599	INTRON Pdp1	regulatory region REDfly_CRMs
3L	9741181	3L_9741181_SNP [dm3] 3L_9748081_SNP [dm6]	T	A	1.430e^-4	0.599	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1025342	2L_1025342_SNP [dm3] 2L_1025342_SNP [dm6]	A	G	1.442e^-4	0.599	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
X	8859130	X_8859130_DEL [dm3] X_8965097_DEL [dm6]	TT	T	1.447e^-4	0.599	UPSTREAM mir-4964 INTRON rdgA
2R	17292240	2R_17292240_SNP [dm3] 2R_21404735_SNP [dm6]	T	G	1.448e^-4	0.599	INTRON Sdc
3R	9903103	3R_9903103_SNP [dm3] 3R_14077381_SNP [dm6]	T	C	1.453e^-4	0.599	INTRON foxo
2L	779841	2L_779841_SNP [dm3] 2L_779841_SNP [dm6]	G	C	1.457e^-4	0.599	UPSTREAM Gr21a DOWNSTREAM CG13947 INTERGENIC
3R	14798461	3R_14798461_SNP [dm3] 3R_18972739_SNP [dm6]	T	G	1.462e^-4	0.599	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14011096	2R_14011096_SNP [dm3] 2R_18123591_SNP [dm6]	C	T	1.464e^-4	0.599	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16960522	2R_16960522_SNP [dm3] 2R_21073017_SNP [dm6]	A	T	1.467e^-4	0.599	UPSTREAM CG10527 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16960540	2R_16960540_SNP [dm3] 2R_21073035_SNP [dm6]	G	A	1.467e^-4	0.599	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16960593	2R_16960593_SNP [dm3] 2R_21073088_SNP [dm6]	C	A	1.467e^-4	0.599	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
X	21451632	X_21451632_DEL [dm3] X_21580605_DEL [dm6]	CCAAAGTCT	C	1.468e^-4	0.599	INTERGENIC
3R	6438133	3R_6438133_SNP [dm3] 3R_10612411_SNP [dm6]	C	T	1.472e^-4	0.599	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11585319	3R_11585319_SNP [dm3] 3R_15759597_SNP [dm6]	G	A	1.475e^-4	0.599	INTERGENIC
3R	9858743	3R_9858743_SNP [dm3] 3R_14033021_SNP [dm6]	C	A	1.478e^-4	0.599	UPSTREAM rdx INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	11188377	3L_11188377_INS [dm3] 3L_11195277_INS [dm6]	T	TT	1.478e^-4	0.599	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2L	16321525	2L_16321525_SNP [dm3] 2L_16321525_SNP [dm6]	A	G	1.479e^-4	0.599	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10354673	3L_10354673_SNP [dm3] 3L_10361573_SNP [dm6]	A	C	1.479e^-4	0.599	EXON CR44327	TF binding site mE1_TFBS_cad
3R	11571415	3R_11571415_SNP [dm3] 3R_15745693_SNP [dm6]	G	A	1.488e^-4	0.599	SYNONYMOUS_CODING CG4520
X	16883453	X_16883453_SNP [dm3] X_16989420_SNP [dm6]	T	A	1.489e^-4	0.599	INTRON CG45002
2R	16731302	2R_16731302_SNP [dm3] 2R_20843797_SNP [dm6]	T	C	1.506e^-4	0.599	INTERGENIC
2R	14088081	2R_14088081_SNP [dm3] 2R_18200576_SNP [dm6]	T	A	1.512e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11866875	3R_11866875_SNP [dm3] 3R_16041153_SNP [dm6]	A	G	1.514e^-4	0.599	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	13377124	3L_13377124_SNP [dm3] 3L_13384024_SNP [dm6]	A	T	1.514e^-4	0.599	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2R	12222052	2R_12222052_SNP [dm3] 2R_16334547_SNP [dm6]	G	A	1.515e^-4	0.599	UPSTREAM Vha44 INTRON Vha44
3R	14543027	3R_14543027_SNP [dm3] 3R_18717305_SNP [dm6]	G	A	1.515e^-4	0.599	UTR_3_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_HSA
2R	10995364	2R_10995364_SNP [dm3] 2R_15107859_SNP [dm6]	G	C	1.525e^-4	0.599	INTERGENIC
X	21890756	X_21890756_SNP [dm3] X_22488920_SNP [dm6]	C	T	1.535e^-4	0.599	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3R	10410769	3R_10410769_SNP [dm3] 3R_14585047_SNP [dm6]	A	T	1.538e^-4	0.599	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3R	25542985	3R_25542985_SNP [dm3] 3R_29717263_SNP [dm6]	A	C	1.545e^-4	0.599	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	13449113	2L_13449113_SNP [dm3] 2L_13449113_SNP [dm6]	A	G	1.545e^-4	0.599	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
2L	6382272	2L_6382272_SNP [dm3] 2L_6382272_SNP [dm6]	C	T	1.547e^-4	0.599	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8197099	2R_8197099_SNP [dm3] 2R_12309594_SNP [dm6]	C	T	1.547e^-4	0.599	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15994729	3L_15994729_SNP [dm3] 3L_16001629_SNP [dm6]	A	C	1.557e^-4	0.599	INTRON CG5830
3R	10859954	3R_10859954_SNP [dm3] 3R_15034232_SNP [dm6]	T	G	1.559e^-4	0.599	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8541958	2L_8541958_SNP [dm3] 2L_8541958_SNP [dm6]	C	A	1.561e^-4	0.599	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	9322350	3L_9322350_SNP [dm3] 3L_9329250_SNP [dm6]	A	G	1.562e^-4	0.599	INTERGENIC
3L	10861591	3L_10861591_SNP [dm3] 3L_10868491_SNP [dm6]	G	T	1.566e^-4	0.599	INTRON tna
3R	11866471	3R_11866471_SNP [dm3] 3R_16040749_SNP [dm6]	A	T	1.566e^-4	0.599	UTR_3_PRIME pnr
2R	17614529	2R_17614529_SNP [dm3] 2R_21727024_SNP [dm6]	C	A	1.569e^-4	0.599	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3R	4759879	3R_4759879_SNP [dm3] 3R_8934157_SNP [dm6]	T	A	1.570e^-4	0.599	UPSTREAM osk DOWNSTREAM CR44020 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13376237	3L_13376237_SNP [dm3] 3L_13383137_SNP [dm6]	G	A	1.577e^-4	0.599	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7574083	2R_7574083_SNP [dm3] 2R_11686578_SNP [dm6]	A	T	1.578e^-4	0.599	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10435123	3L_10435123_SNP [dm3] 3L_10442023_SNP [dm6]	A	G	1.581e^-4	0.599	INTERGENIC
3R	25542972	3R_25542972_SNP [dm3] 3R_29717250_SNP [dm6]	C	T	1.586e^-4	0.599	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7827964	3L_7827964_SNP [dm3] 3L_7834864_SNP [dm6]	A	G	1.590e^-4	0.599	INTRON Pdp1
2L	9610212	2L_9610212_SNP [dm3] 2L_9610212_SNP [dm6]	C	T	1.590e^-4	0.599	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3R	6383275	3R_6383275_SNP [dm3] 3R_10557553_SNP [dm6]	T	C	1.597e^-4	0.599	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	11603315	3R_11603315_DEL [dm3] 3R_15777593_DEL [dm6]	GG	G	1.599e^-4	0.599	UTR_3_PRIME CG4525
3L	23583808	3L_23583808_SNP [dm3] 3L_23590708_SNP [dm6]	C	T	1.599e^-4	0.599	INTRON AGO3
3L	10267045	3L_10267045_SNP [dm3] 3L_10273945_SNP [dm6]	C	T	1.600e^-4	0.599	SYNONYMOUS_CODING Or67d
3L	2230621	3L_2230621_SNP [dm3] 3L_2230621_SNP [dm6]	C	T	1.608e^-4	0.599	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9766605	2R_9766605_SNP [dm3] 2R_13879100_SNP [dm6]	A	G	1.619e^-4	0.599	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16722809	2R_16722809_DEL [dm3] 2R_20835304_DEL [dm6]	CGGTATCC	C	1.628e^-4	0.599	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9412047	2R_9412047_SNP [dm3] 2R_13524542_SNP [dm6]	A	G	1.628e^-4	0.599	UPSTREAM CG13332 INTRON Vmat
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	1.629e^-4	0.599	DOWNSTREAM CG4525 INTERGENIC
X	4124206	X_4124206_SNP [dm3] X_4230173_SNP [dm6]	A	G	1.630e^-4	0.599	INTERGENIC
2R	7563313	2R_7563313_SNP [dm3] 2R_11675808_SNP [dm6]	C	T	1.631e^-4	0.599	UPSTREAM Tret1-2 INTRON Roc2
2L	15026370	2L_15026370_SNP [dm3] 2L_15026370_SNP [dm6]	C	A	1.632e^-4	0.599	UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_inv
2R	12260988	2R_12260988_SNP [dm3] 2R_16373483_SNP [dm6]	T	G	1.635e^-4	0.599	INTERGENIC
2R	16717444	2R_16717444_SNP [dm3] 2R_20829939_SNP [dm6]	C	T	1.637e^-4	0.599	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14011097	2R_14011097_SNP [dm3] 2R_18123592_SNP [dm6]	G	T	1.637e^-4	0.599	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9872896	2L_9872896_SNP [dm3] 2L_9872896_SNP [dm6]	C	G	1.643e^-4	0.599	INTRON nAChRalpha6
3L	1651530	3L_1651530_SNP [dm3] 3L_1651530_SNP [dm6]	C	A	1.643e^-4	0.599	UTR_3_PRIME CG7967 DOWNSTREAM CG13920	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
3R	11866482	3R_11866482_SNP [dm3] 3R_16040760_SNP [dm6]	C	A	1.643e^-4	0.599	UTR_3_PRIME pnr
X	20891586	X_20891586_SNP [dm3] X_21020559_SNP [dm6]	G	A	1.646e^-4	0.599	INTERGENIC
2R	6753461	2R_6753461_SNP [dm3] 2R_10865956_SNP [dm6]	A	G	1.647e^-4	0.599	INTRON CG30015
3L	10544017	3L_10544017_SNP [dm3] 3L_10550917_SNP [dm6]	A	C	1.648e^-4	0.599	INTRON A2bp1
X	4137943	X_4137943_SNP [dm3] X_4243910_SNP [dm6]	T	A	1.652e^-4	0.599	DOWNSTREAM Muc4B INTERGENIC
3R	10897121	3R_10897121_SNP [dm3] 3R_15071399_SNP [dm6]	C	A	1.659e^-4	0.599	INTRON dpr9	TF binding site mE1_TFBS_cad
2L	12470467	2L_12470467_DEL [dm3] 2L_12470467_DEL [dm6]	AA	A	1.660e^-4	0.599	INTRON bun
2R	9287031	2R_9287031_DEL [dm3] 2R_13399526_DEL [dm6]	TCA	T	1.668e^-4	0.599	UPSTREAM CG4744 INTERGENIC
3R	9881604	3R_9881604_SNP [dm3] 3R_14055882_SNP [dm6]	A	T	1.668e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3926865	2L_3926865_SNP [dm3] 2L_3926865_SNP [dm6]	T	G	1.672e^-4	0.599	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	22970331	3L_22970331_SNP [dm3] 3L_22977231_SNP [dm6]	G	T	1.673e^-4	0.599	INTERGENIC	transposable element FlyBase
3R	11866265	3R_11866265_SNP [dm3] 3R_16040543_SNP [dm6]	A	G	1.673e^-4	0.599	UTR_3_PRIME pnr	TF binding site mE1_TFBS_cad
2R	8898213	2R_8898213_SNP [dm3] 2R_13010708_SNP [dm6]	G	A	1.680e^-4	0.599	INTERGENIC
2R	18028108	2R_18028108_SNP [dm3] 2R_22140603_SNP [dm6]	C	A	1.686e^-4	0.599	INTRON a & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6725262	3R_6725262_SNP [dm3] 3R_10899540_SNP [dm6]	G	A	1.687e^-4	0.599	UPSTREAM CR45578 INTERGENIC
X	10010361	X_10010361_SNP [dm3] X_10116328_SNP [dm6]	A	T	1.693e^-4	0.599	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	15053669	2R_15053669_SNP [dm3] 2R_19166164_SNP [dm6]	T	C	1.695e^-4	0.599	INTRON CG10737
3R	8443755	3R_8443755_INS [dm3] 3R_12618033_INS [dm6]	T	TCTAATCTATA...	1.697e^-4	0.599	DOWNSTREAM CR44942 INTERGENIC
2R	8992594	2R_8992594_SNP [dm3] 2R_13105089_SNP [dm6]	T	C	1.700e^-4	0.599	DOWNSTREAM CG44341 INTERGENIC
3R	9497033	3R_9497033_SNP [dm3] 3R_13671311_SNP [dm6]	A	G	1.702e^-4	0.599	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15869229	X_15869229_SNP [dm3] X_15975196_SNP [dm6]	C	T	1.703e^-4	0.599	SYNONYMOUS_CODING Or13a
3L	17993701	3L_17993701_SNP [dm3] 3L_18000601_SNP [dm6]	T	C	1.715e^-4	0.599	UPSTREAM Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13377119	3L_13377119_SNP [dm3] 3L_13384019_SNP [dm6]	T	G	1.716e^-4	0.599	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	2789615	3L_2789615_SNP [dm3] 3L_2789615_SNP [dm6]	C	T	1.728e^-4	0.599	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23322902	3L_23322902_SNP [dm3] 3L_23329802_SNP [dm6]	T	A	1.731e^-4	0.599	UTR_3_PRIME alpha-Cat INTRON alpha-Cat	transposable element FlyBase
3L	1229024	3L_1229024_SNP [dm3] 3L_1229024_SNP [dm6]	T	A	1.756e^-4	0.599	DOWNSTREAM LysS INTRON mwh
2R	6251275	2R_6251275_SNP [dm3] 2R_10363770_SNP [dm6]	C	T	1.756e^-4	0.599	DOWNSTREAM Gr47a INTRON CG42732
3L	10846631	3L_10846631_SNP [dm3] 3L_10853531_SNP [dm6]	T	C	1.756e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	7622393	X_7622393_SNP [dm3] X_7728360_SNP [dm6]	C	G	1.757e^-4	0.599	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9612017	3L_9612017_SNP [dm3] 3L_9618917_SNP [dm6]	A	T	1.759e^-4	0.599	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	779857	2L_779857_DEL [dm3] 2L_779857_DEL [dm6]	AGTGTAATAAA...	A	1.764e^-4	0.599	UPSTREAM Gr21a DOWNSTREAM CG13947 INTERGENIC
3L	14172702	3L_14172702_SNP [dm3] 3L_14179602_SNP [dm6]	A	C	1.767e^-4	0.599	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3L	10901572	3L_10901572_SNP [dm3] 3L_10908472_SNP [dm6]	C	T	1.769e^-4	0.599	INTERGENIC
3L	18630609	3L_18630609_INS [dm3] 3L_18637509_INS [dm6]	A	AA	1.770e^-4	0.599	INTRON MYPT-75D
3L	7723144	3L_7723144_SNP [dm3] 3L_7730044_SNP [dm6]	G	T	1.773e^-4	0.599	SYNONYMOUS_CODING CG8492 INTRON CG32373
3L	18069507	3L_18069507_DEL [dm3] 3L_18076407_DEL [dm6]	ACAGACTGGTG...	A	1.774e^-4	0.599	INTERGENIC
2L	8541730	2L_8541730_SNP [dm3] 2L_8541730_SNP [dm6]	G	A	1.777e^-4	0.599	UPSTREAM tRNA:CR31603 & 2 others DOWNSTREAM CG17834 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20566317	3R_20566317_SNP [dm3] 3R_24740595_SNP [dm6]	T	C	1.778e^-4	0.599	INTRON tok
2L	13484597	2L_13484597_SNP [dm3] 2L_13484597_SNP [dm6]	C	T	1.784e^-4	0.599	START_GAINED CG42784 UTR_5_PRIME CG42784 INTRON CG42784	TF binding site mE1_TFBS_cad
3L	9321067	3L_9321067_SNP [dm3] 3L_9327967_SNP [dm6]	A	G	1.784e^-4	0.599	INTERGENIC
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	1.788e^-4	0.599	INTRON Arr1	TF binding site mE1_TFBS_chinmo
3L	18069009	3L_18069009_SNP [dm3] 3L_18075909_SNP [dm6]	T	C	1.794e^-4	0.599	UPSTREAM CR45391 INTERGENIC
2R	9353736	2R_9353736_SNP [dm3] 2R_13466231_SNP [dm6]	C	T	1.797e^-4	0.599	INTRON arr
X	20891594	X_20891594_SNP [dm3] X_21020567_SNP [dm6]	G	C	1.798e^-4	0.599	INTERGENIC
X	4126376	X_4126376_SNP [dm3] X_4232343_SNP [dm6]	G	A	1.800e^-4	0.599	INTERGENIC
3L	14509424	3L_14509424_SNP [dm3] 3L_14516324_SNP [dm6]	T	C	1.801e^-4	0.599	INTRON bbg
3R	18911222	3R_18911222_SNP [dm3] 3R_23085500_SNP [dm6]	A	C	1.802e^-4	0.599	INTRON CG13830
2L	8541867	2L_8541867_SNP [dm3] 2L_8541867_SNP [dm6]	T	A	1.803e^-4	0.599	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20587776	3R_20587776_SNP [dm3] 3R_24762054_SNP [dm6]	C	A	1.806e^-4	0.599	INTRON AstA
3L	15474902	3L_15474902_SNP [dm3] 3L_15481802_SNP [dm6]	G	T	1.817e^-4	0.599	INTERGENIC
2R	12260877	2R_12260877_SNP [dm3] 2R_16373372_SNP [dm6]	A	G	1.821e^-4	0.599	INTERGENIC
2L	1598442	2L_1598442_SNP [dm3] 2L_1598442_SNP [dm6]	A	G	1.830e^-4	0.599	INTRON haf & 1 other
2L	8541872	2L_8541872_SNP [dm3] 2L_8541872_SNP [dm6]	T	C	1.832e^-4	0.599	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4137985	X_4137985_SNP [dm3] X_4243952_SNP [dm6]	A	G	1.834e^-4	0.599	DOWNSTREAM Muc4B INTERGENIC
3R	7645096	3R_7645096_SNP [dm3] 3R_11819374_SNP [dm6]	T	C	1.837e^-4	0.599	UTR_5_PRIME CoVa UPSTREAM CoVa & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	8382124	3R_8382124_SNP [dm3] 3R_12556402_SNP [dm6]	T	A	1.838e^-4	0.599	INTRON Octbeta2R
X	12834128	X_12834128_SNP [dm3] X_12940095_SNP [dm6]	A	T	1.838e^-4	0.599	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	17031995	3R_17031995_SNP [dm3] 3R_21206273_SNP [dm6]	T	A	1.838e^-4	0.599	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
3L	18796749	3L_18796749_SNP [dm3] 3L_18803649_SNP [dm6]	C	A	1.844e^-4	0.599	NON_SYNONYMOUS_CODING CG14073
2R	12328310	2R_12328310_DEL [dm3] 2R_16440805_DEL [dm6]	AG	A	1.847e^-4	0.599	INTERGENIC
X	5739359	X_5739359_SNP [dm3] X_5845326_SNP [dm6]	T	C	1.853e^-4	0.599	UTR_5_PRIME CG12729
2R	19724809	2R_19724809_SNP [dm3] 2R_23837286_SNP [dm6]	G	T	1.857e^-4	0.599	NON_SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17641407	2R_17641407_SNP [dm3] 2R_21753902_SNP [dm6]	C	A	1.860e^-4	0.599	INTERGENIC
3R	14931218	3R_14931218_SNP [dm3] 3R_19105496_SNP [dm6]	C	G	1.861e^-4	0.599	INTRON CG6040
3L	22032537	3L_22032537_SNP [dm3] 3L_22039437_SNP [dm6]	G	C	1.877e^-4	0.599	INTRON Oct-TyrR
2L	948957	2L_948957_SNP [dm3] 2L_948957_SNP [dm6]	T	C	1.882e^-4	0.599	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3R	13372488	3R_13372488_SNP [dm3] 3R_17546766_SNP [dm6]	C	T	1.883e^-4	0.599	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8172276	X_8172276_SNP [dm3] X_8278243_SNP [dm6]	G	C	1.892e^-4	0.599	UTR_3_PRIME nAChRalpha3
3R	7644100	3R_7644100_SNP [dm3] 3R_11818378_SNP [dm6]	A	G	1.897e^-4	0.599	UPSTREAM CoVa INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3R	10574044	3R_10574044_SNP [dm3] 3R_14748322_SNP [dm6]	A	G	1.897e^-4	0.599	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	22727097	3R_22727097_SNP [dm3] 3R_26901375_SNP [dm6]	G	A	1.899e^-4	0.599	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	16735043	2R_16735043_SNP [dm3] 2R_20847538_SNP [dm6]	A	C	1.900e^-4	0.599	DOWNSTREAM CG17999 INTERGENIC
2L	6368719	2L_6368719_SNP [dm3] 2L_6368719_SNP [dm6]	A	G	1.901e^-4	0.599	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10862051	3L_10862051_SNP [dm3] 3L_10868951_SNP [dm6]	T	G	1.902e^-4	0.599	UPSTREAM tna INTRON tna
2R	17614524	2R_17614524_SNP [dm3] 2R_21727019_SNP [dm6]	T	A	1.906e^-4	0.599	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3R	11866485	3R_11866485_SNP [dm3] 3R_16040763_SNP [dm6]	G	A	1.916e^-4	0.599	UTR_3_PRIME pnr
2L	13116639	2L_13116639_SNP [dm3] 2L_13116639_SNP [dm6]	C	A	1.919e^-4	0.599	INTERGENIC
3L	11228225	3L_11228225_SNP [dm3] 3L_11235125_SNP [dm6]	G	T	1.922e^-4	0.599	INTRON Ir68a
X	10010330	X_10010330_SNP [dm3] X_10116297_SNP [dm6]	A	T	1.923e^-4	0.599	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	10002402	3L_10002402_SNP [dm3] 3L_10009302_SNP [dm6]	T	C	1.929e^-4	0.599	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
2L	18865383	2L_18865383_SNP [dm3] 2L_18865383_SNP [dm6]	A	C	1.930e^-4	0.599	INTRON tup	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	6696454	3R_6696454_SNP [dm3] 3R_10870732_SNP [dm6]	T	A	1.933e^-4	0.599	DOWNSTREAM Fdh & 1 other INTERGENIC
3L	2390880	3L_2390880_SNP [dm3] 3L_2390880_SNP [dm6]	A	G	1.935e^-4	0.599	NON_SYNONYMOUS_CODING CG32298 START_GAINED CG32299 UTR_5_PRIME CG32299 UPSTREAM CG32299 INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	5521140	3L_5521140_SNP [dm3] 3L_5528040_SNP [dm6]	G	C	1.935e^-4	0.599	INTRON Lkr
3R	8431445	3R_8431445_SNP [dm3] 3R_12605723_SNP [dm6]	G	A	1.936e^-4	0.599	INTERGENIC
X	10354326	X_10354326_SNP [dm3] X_10460293_SNP [dm6]	C	G	1.940e^-4	0.599	UPSTREAM Or9a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8383905	3R_8383905_SNP [dm3] 3R_12558183_SNP [dm6]	T	C	1.941e^-4	0.599	INTRON Octbeta2R
3L	10846629	3L_10846629_SNP [dm3] 3L_10853529_SNP [dm6]	T	C	1.943e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17987012	2R_17987012_SNP [dm3] 2R_22099507_SNP [dm6]	G	T	1.948e^-4	0.599	UTR_5_PRIME CG11073	TF binding site BDTNP1_TFBS_dl
2L	14719056	2L_14719056_SNP [dm3] 2L_14719056_SNP [dm6]	C	G	1.948e^-4	0.599	INTERGENIC
2L	3276214	2L_3276214_SNP [dm3] 2L_3276214_SNP [dm6]	C	T	1.956e^-4	0.599	NON_SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12247700	3R_12247700_SNP [dm3] 3R_16421978_SNP [dm6]	A	T	1.957e^-4	0.599	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	4676177	3L_4676177_SNP [dm3] 3L_4676177_SNP [dm6]	G	A	1.961e^-4	0.599	INTRON axo
2R	8992597	2R_8992597_INS [dm3] 2R_13105092_INS [dm6]	A	AGCCACCT	1.967e^-4	0.599	DOWNSTREAM CG44341 INTERGENIC
X	4124581	X_4124581_DEL [dm3] X_4230548_DEL [dm6]	CG	C	1.969e^-4	0.599	INTERGENIC
X	4124047	X_4124047_DEL [dm3] X_4230014_DEL [dm6]	GGGACTGGATGGCAAGTTTT...	ATTGGACTGGATGGCAAGTT...	1.973e^-4	0.599	INTERGENIC
X	3608099	X_3608099_INS [dm3] X_3714066_INS [dm6]	T	TCT	1.978e^-4	0.599	INTRON Rala
2L	9486608	2L_9486608_SNP [dm3] 2L_9486608_SNP [dm6]	T	G	1.981e^-4	0.599	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7563170	2R_7563170_SNP [dm3] 2R_11675665_SNP [dm6]	A	T	1.982e^-4	0.599	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
3L	18067312	3L_18067312_SNP [dm3] 3L_18074212_SNP [dm6]	G	A	1.987e^-4	0.599	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
3L	22065489	3L_22065489_SNP [dm3] 3L_22072389_SNP [dm6]	G	A	1.990e^-4	0.599	UPSTREAM CG7139 DOWNSTREAM CG7133 EXON CR43995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8442352	3R_8442352_SNP [dm3] 3R_12616630_SNP [dm6]	G	A	1.990e^-4	0.599	INTERGENIC
3L	22780600	3L_22780600_SNP [dm3] 3L_22787500_SNP [dm6]	G	A	1.996e^-4	0.599	UTR_3_PRIME SPoCk UPSTREAM CG14448
2R	18028008	2R_18028008_SNP [dm3] 2R_22140503_SNP [dm6]	C	T	1.997e^-4	0.599	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
3R	7991183	3R_7991183_SNP [dm3] 3R_12165461_SNP [dm6]	T	A	1.999e^-4	0.599	SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15219034	2R_15219034_SNP [dm3] 2R_19331529_SNP [dm6]	A	G	2.009e^-4	0.599	INTRON Rgk1 & 1 other
2L	6265728	2L_6265728_SNP [dm3] 2L_6265728_SNP [dm6]	A	T	2.009e^-4	0.599	INTRON Ddr
3L	1139131	3L_1139131_SNP [dm3] 3L_1139131_SNP [dm6]	T	C	2.016e^-4	0.599	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15597747	3L_15597747_SNP [dm3] 3L_15604647_SNP [dm6]	A	T	2.017e^-4	0.599	INTRON RhoGAP71E
3L	843421	3L_843421_SNP [dm3] 3L_843421_SNP [dm6]	T	G	2.020e^-4	0.599	UTR_3_PRIME Gr61a UPSTREAM CG13889
2R	16960381	2R_16960381_SNP [dm3] 2R_21072876_SNP [dm6]	C	T	2.022e^-4	0.599	UPSTREAM CG10527 DOWNSTREAM CR44704 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6251989	2R_6251989_SNP [dm3] 2R_10364484_SNP [dm6]	T	C	2.027e^-4	0.599	NON_SYNONYMOUS_CODING CG42732 DOWNSTREAM Gr47a INTRON CG42732
3R	9633608	3R_9633608_SNP [dm3] 3R_13807886_SNP [dm6]	C	G	2.027e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6300264	2L_6300264_SNP [dm3] 2L_6300264_SNP [dm6]	A	G	2.028e^-4	0.599	INTRON Ddr
X	4124990	X_4124990_SNP [dm3] X_4230957_SNP [dm6]	C	T	2.029e^-4	0.599	INTERGENIC
3L	23233594	3L_23233594_SNP [dm3] 3L_23240494_SNP [dm6]	C	T	2.030e^-4	0.599	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
X	4137910	X_4137910_SNP [dm3] X_4243877_SNP [dm6]	C	A	2.031e^-4	0.599	DOWNSTREAM Muc4B INTERGENIC
X	13184473	X_13184473_SNP [dm3] X_13290440_SNP [dm6]	T	C	2.031e^-4	0.599	SYNONYMOUS_CODING CG15744	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10463975	3R_10463975_SNP [dm3] 3R_14638253_SNP [dm6]	T	C	2.031e^-4	0.599	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	4456718	2R_4456718_SNP [dm3] 2R_8569213_SNP [dm6]	C	T	2.033e^-4	0.599	EXON Cyp6a15Psi
3R	13806541	3R_13806541_SNP [dm3] 3R_17980819_SNP [dm6]	A	G	2.041e^-4	0.599	INTRON cpo
3L	22880857	3L_22880857_SNP [dm3] 3L_22887757_SNP [dm6]	C	G	2.042e^-4	0.599	INTRON slif
3R	11866474	3R_11866474_MNP [dm3] 3R_16040752_MNP [dm6]	AAC	TGG	2.044e^-4	0.599	UTR_3_PRIME pnr
2R	16960757	2R_16960757_SNP [dm3] 2R_21073252_SNP [dm6]	C	A	2.047e^-4	0.599	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1046306	2L_1046306_SNP [dm3] 2L_1046306_SNP [dm6]	C	A	2.048e^-4	0.599	INTRON IA-2
3L	2800570	3L_2800570_SNP [dm3] 3L_2800570_SNP [dm6]	G	A	2.066e^-4	0.599	INTRON CG43444	TF binding site mE1_TFBS_inv
X	20891561	X_20891561_SNP [dm3] X_21020534_SNP [dm6]	C	G	2.076e^-4	0.599	INTERGENIC
3L	15994721	3L_15994721_SNP [dm3] 3L_16001621_SNP [dm6]	A	T	2.076e^-4	0.599	INTRON CG5830
3L	2406538	3L_2406538_SNP [dm3] 3L_2406538_SNP [dm6]	T	A	2.084e^-4	0.599	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10133272	3L_10133272_SNP [dm3] 3L_10140172_SNP [dm6]	C	G	2.084e^-4	0.599	DOWNSTREAM dpr6 INTERGENIC
3L	7231716	3L_7231716_SNP [dm3] 3L_7238616_SNP [dm6]	A	T	2.090e^-4	0.599	START_GAINED BHD UTR_5_PRIME BHD UPSTREAM CG14829	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8541956	2L_8541956_SNP [dm3] 2L_8541956_SNP [dm6]	A	G	2.092e^-4	0.599	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	9609559	2L_9609559_SNP [dm3] 2L_9609559_SNP [dm6]	T	G	2.093e^-4	0.599	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10754729	3L_10754729_SNP [dm3] 3L_10761629_SNP [dm6]	A	T	2.098e^-4	0.599	INTERGENIC
3L	7620131	3L_7620131_SNP [dm3] 3L_7627031_SNP [dm6]	G	A	2.099e^-4	0.599	INTRON CG33275
3R	16104595	3R_16104595_SNP [dm3] 3R_20278873_SNP [dm6]	C	A	2.100e^-4	0.599	INTRON cic
2R	7355909	2R_7355909_SNP [dm3] 2R_11468404_SNP [dm6]	A	G	2.104e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15474897	3L_15474897_SNP [dm3] 3L_15481797_SNP [dm6]	A	T	2.104e^-4	0.599	INTERGENIC
2L	2081979	2L_2081979_SNP [dm3] 2L_2081979_SNP [dm6]	T	C	2.105e^-4	0.599	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18984802	2R_18984802_SNP [dm3] 2R_23097279_SNP [dm6]	C	T	2.113e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	3926659	2L_3926659_SNP [dm3] 2L_3926659_SNP [dm6]	C	T	2.114e^-4	0.599	INTRON fred	TF binding site mE1_TFBS_bab1
2L	10681786	2L_10681786_INS [dm3] 2L_10681786_INS [dm6]	A	AGTA	2.119e^-4	0.599	UPSTREAM CG17107 DOWNSTREAM CG17105 INTERGENIC
3R	11866470	3R_11866470_SNP [dm3] 3R_16040748_SNP [dm6]	C	A	2.120e^-4	0.599	UTR_3_PRIME pnr
3R	8634682	3R_8634682_SNP [dm3] 3R_12808960_SNP [dm6]	C	T	2.120e^-4	0.599	INTERGENIC
2L	4453888	2L_4453888_SNP [dm3] 2L_4453888_SNP [dm6]	C	A	2.120e^-4	0.599	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14171066	3L_14171066_SNP [dm3] 3L_14177966_SNP [dm6]	G	A	2.125e^-4	0.599	UTR_5_PRIME D UPSTREAM D	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6509331	2R_6509331_SNP [dm3] 2R_10621826_SNP [dm6]	G	T	2.126e^-4	0.599	UPSTREAM CG11883 INTRON CG11883
2R	14520666	2R_14520666_SNP [dm3] 2R_18633161_SNP [dm6]	C	G	2.129e^-4	0.599	INTRON CG30122
2R	13766403	2R_13766403_SNP [dm3] 2R_17878898_SNP [dm6]	A	G	2.129e^-4	0.599	SYNONYMOUS_CODING CG30325 INTRON Elk
2L	14719098	2L_14719098_SNP [dm3] 2L_14719098_SNP [dm6]	T	G	2.136e^-4	0.599	INTERGENIC
X	4189883	X_4189883_SNP [dm3] X_4295850_SNP [dm6]	C	T	2.138e^-4	0.599	INTERGENIC
4	472617	4_472617_SNP [dm3] 4_451991_SNP [dm6]	T	C	2.146e^-4	0.599	INTRON CaMKI
2R	12900995	2R_12900995_SNP [dm3] 2R_17013490_SNP [dm6]	G	A	2.147e^-4	0.599	INTRON Ehbp1
2R	13972979	2R_13972979_SNP [dm3] 2R_18085474_SNP [dm6]	C	T	2.153e^-4	0.599	INTRON CG34386
2R	7560168	2R_7560168_SNP [dm3] 2R_11672663_SNP [dm6]	C	T	2.153e^-4	0.599	INTRON Roc2 & 1 other
3L	2390421	3L_2390421_SNP [dm3] 3L_2390421_SNP [dm6]	G	T	2.156e^-4	0.599	SPLICE_SITE_REGION CG32298 & 1 other SYNONYMOUS_CODING CG32298 UTR_5_PRIME CG32299 UPSTREAM CG32299 DOWNSTREAM CG42787 INTRON CG45186
2R	7366223	2R_7366223_SNP [dm3] 2R_11478718_SNP [dm6]	G	A	2.158e^-4	0.599	INTRON inv	TF binding site BDTNP1_TFBS_dl
2L	13354210	2L_13354210_SNP [dm3] 2L_13354210_SNP [dm6]	G	T	2.159e^-4	0.599	SYNONYMOUS_CODING CG9395
2L	12651099	2L_12651099_SNP [dm3] 2L_12651099_SNP [dm6]	C	G	2.171e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16229025	2L_16229025_SNP [dm3] 2L_16229025_SNP [dm6]	T	A	2.177e^-4	0.599	INTERGENIC
2L	7301351	2L_7301351_DEL [dm3] 2L_7301351_DEL [dm6]	ACCTACCAGATCATGGATCT...	A	2.178e^-4	0.599	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3498973	3L_3498973_SNP [dm3] 3L_3498973_SNP [dm6]	G	T	2.182e^-4	0.599	INTRON CG42324
3R	10364011	3R_10364011_SNP [dm3] 3R_14538289_SNP [dm6]	G	C	2.183e^-4	0.599	INTRON Pde6
3L	11297118	3L_11297118_SNP [dm3] 3L_11304018_SNP [dm6]	C	T	2.184e^-4	0.599	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9604980	2L_9604980_SNP [dm3] 2L_9604980_SNP [dm6]	G	A	2.185e^-4	0.599	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3R	13031604	3R_13031604_SNP [dm3] 3R_17205882_SNP [dm6]	T	C	2.187e^-4	0.599	INTERGENIC
2L	8541960	2L_8541960_DEL [dm3] 2L_8541960_DEL [dm6]	TATAGCT	T	2.187e^-4	0.599	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	8484074	3R_8484074_SNP [dm3] 3R_12658352_SNP [dm6]	G	A	2.188e^-4	0.599	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
2L	15729163	2L_15729163_SNP [dm3] 2L_15729163_SNP [dm6]	G	A	2.193e^-4	0.599	INTRON CycE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16834791	2R_16834791_INS [dm3] 2R_20947286_INS [dm6]	C	CCGAA	2.196e^-4	0.599	DOWNSTREAM Act57B INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	6152605	X_6152605_SNP [dm3] X_6258572_SNP [dm6]	T	A	2.199e^-4	0.599	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
X	6152619	X_6152619_SNP [dm3] X_6258586_SNP [dm6]	A	C	2.199e^-4	0.599	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
2R	7563328	2R_7563328_SNP [dm3] 2R_11675823_SNP [dm6]	C	T	2.201e^-4	0.599	UPSTREAM Tret1-2 INTRON Roc2
X	1740899	X_1740899_SNP [dm3] X_1846866_SNP [dm6]	C	G	2.202e^-4	0.599	INTRON CG42666
3R	15738197	3R_15738197_SNP [dm3] 3R_19912475_SNP [dm6]	A	G	2.205e^-4	0.599	SYNONYMOUS_CODING RhoGAP92B	TF binding site mE1_TFBS_cad
X	4071461	X_4071461_DEL [dm3] X_4177428_DEL [dm6]	AA	A	2.207e^-4	0.599	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12487740	3L_12487740_SNP [dm3] 3L_12494640_SNP [dm6]	C	T	2.210e^-4	0.599	INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15239151	3L_15239151_SNP [dm3] 3L_15246051_SNP [dm6]	C	A	2.214e^-4	0.599	INTERGENIC
3L	8891777	3L_8891777_SNP [dm3] 3L_8898677_SNP [dm6]	C	T	2.215e^-4	0.599	INTRON TrpA1
3L	8041903	3L_8041903_DEL [dm3] 3L_8048803_DEL [dm6]	CATTATA	T	2.219e^-4	0.599	INTRON nmo
2L	13486249	2L_13486249_SNP [dm3] 2L_13486249_SNP [dm6]	C	T	2.222e^-4	0.599	INTRON CG42784
2L	6684180	2L_6684180_SNP [dm3] 2L_6684180_SNP [dm6]	G	A	2.226e^-4	0.599	START_GAINED Nhe3 UTR_5_PRIME Nhe3 DOWNSTREAM CG11327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
2L	8654706	2L_8654706_SNP [dm3] 2L_8654706_SNP [dm6]	G	A	2.230e^-4	0.599	INTRON Sema-1a
3R	19998489	3R_19998489_SNP [dm3] 3R_24172767_SNP [dm6]	G	C	2.234e^-4	0.599	INTRON CG13606	TF binding site BDTNP1_TFBS_z
3L	5428592	3L_5428592_SNP [dm3] 3L_5435492_SNP [dm6]	C	G	2.247e^-4	0.599	UPSTREAM CG34391 INTRON CG34391
2L	10720423	2L_10720423_SNP [dm3] 2L_10720423_SNP [dm6]	A	C	2.250e^-4	0.599	INTERGENIC
3L	17681659	3L_17681659_SNP [dm3] 3L_17688559_SNP [dm6]	T	G	2.250e^-4	0.599	INTERGENIC
3L	6697549	3L_6697549_SNP [dm3] 3L_6704449_SNP [dm6]	G	A	2.259e^-4	0.599	UPSTREAM SP1173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12048459	X_12048459_SNP [dm3] X_12154426_SNP [dm6]	A	G	2.260e^-4	0.599	INTRON Ten-a
3L	12302036	3L_12302036_SNP [dm3] 3L_12308936_SNP [dm6]	A	T	2.269e^-4	0.599	INTERGENIC
3R	21427687	3R_21427687_SNP [dm3] 3R_25601965_SNP [dm6]	G	A	2.270e^-4	0.599	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
2L	3091176	2L_3091176_SNP [dm3] 2L_3091176_SNP [dm6]	C	T	2.271e^-4	0.599	UPSTREAM toc INTRON toc
3R	7214533	3R_7214533_SNP [dm3] 3R_11388811_SNP [dm6]	T	C	2.275e^-4	0.599	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10004259	3L_10004259_SNP [dm3] 3L_10011159_SNP [dm6]	A	G	2.277e^-4	0.599	INTRON dpr6
3L	23237333	3L_23237333_SNP [dm3] 3L_23244233_SNP [dm6]	A	G	2.277e^-4	0.599	INTRON nAChRalpha4	TF binding site mE1_TFBS_sens
3L	22031552	3L_22031552_SNP [dm3] 3L_22038452_SNP [dm6]	G	A	2.280e^-4	0.599	INTRON Oct-TyrR
2L	803819	2L_803819_SNP [dm3] 2L_803819_SNP [dm6]	G	T	2.283e^-4	0.599	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4107906	3L_4107906_SNP [dm3] 3L_4107906_SNP [dm6]	A	G	2.289e^-4	0.599	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4886068	2L_4886068_SNP [dm3] 2L_4886068_SNP [dm6]	G	A	2.293e^-4	0.599	DOWNSTREAM CG3008 INTERGENIC
3L	14493362	3L_14493362_SNP [dm3] 3L_14500262_SNP [dm6]	A	C	2.293e^-4	0.599	INTRON bbg
2L	6976722	2L_6976722_SNP [dm3] 2L_6976722_SNP [dm6]	T	A	2.295e^-4	0.599	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	10141853	3L_10141853_SNP [dm3] 3L_10148753_SNP [dm6]	A	T	2.298e^-4	0.599	UTR_3_PRIME dpr10
3L	18367288	3L_18367288_SNP [dm3] 3L_18374188_SNP [dm6]	C	T	2.298e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8891499	3L_8891499_SNP [dm3] 3L_8898399_SNP [dm6]	C	T	2.301e^-4	0.599	INTRON TrpA1
3L	11208532	3L_11208532_SNP [dm3] 3L_11215432_SNP [dm6]	A	T	2.302e^-4	0.599	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	13111055	3R_13111055_SNP [dm3] 3R_17285333_SNP [dm6]	A	G	2.308e^-4	0.599	NON_SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418 & 1 other
2L	5734622	2L_5734622_SNP [dm3] 2L_5734622_SNP [dm6]	A	G	2.311e^-4	0.599	SYNONYMOUS_CODING CG11147 INTRON CG11030
3L	23237661	3L_23237661_SNP [dm3] 3L_23244561_SNP [dm6]	C	T	2.321e^-4	0.599	INTRON nAChRalpha4
3L	7828817	3L_7828817_INS [dm3] 3L_7835717_INS [dm6]	T	TA	2.321e^-4	0.599	INTRON Pdp1
2L	12652191	2L_12652191_SNP [dm3] 2L_12652191_SNP [dm6]	G	A	2.327e^-4	0.599	INTERGENIC
2R	7563242	2R_7563242_SNP [dm3] 2R_11675737_SNP [dm6]	C	T	2.333e^-4	0.599	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
2R	18957314	2R_18957314_SNP [dm3] 2R_23069791_SNP [dm6]	A	T	2.337e^-4	0.599	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9621794	2L_9621794_SNP [dm3] 2L_9621794_SNP [dm6]	C	A	2.339e^-4	0.599	INTRON GlcAT-S
2L	18589939	2L_18589939_SNP [dm3] 2L_18589939_SNP [dm6]	A	G	2.340e^-4	0.599	UPSTREAM CG15160 INTRON Pde11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11047710	3L_11047710_DEL [dm3] 3L_11054610_DEL [dm6]	AGACTCAACTCATTTCGA...	A	2.341e^-4	0.599	UPSTREAM CG7888 INTRON CG7888
3L	23390194	3L_23390194_SNP [dm3] 3L_23397094_SNP [dm6]	A	G	2.341e^-4	0.599	INTERGENIC	transposable element FlyBase
3R	8169826	3R_8169826_SNP [dm3] 3R_12344104_SNP [dm6]	G	T	2.344e^-4	0.599	INTERGENIC
3L	8776899	3L_8776899_SNP [dm3] 3L_8783799_SNP [dm6]	G	A	2.346e^-4	0.599	INTRON Fhos	TF binding site mE1_TFBS_cad
3L	9021413	3L_9021413_SNP [dm3] 3L_9028313_SNP [dm6]	T	A	2.348e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	467294	3L_467294_SNP [dm3] 3L_467294_SNP [dm6]	T	A	2.348e^-4	0.599	INTRON klar
3L	14511673	3L_14511673_SNP [dm3] 3L_14518573_SNP [dm6]	A	T	2.355e^-4	0.599	DOWNSTREAM CG9592 INTRON bbg
3L	23237242	3L_23237242_SNP [dm3] 3L_23244142_SNP [dm6]	G	A	2.358e^-4	0.599	INTRON nAChRalpha4	TF binding site mE1_TFBS_sens
3L	12149536	3L_12149536_SNP [dm3] 3L_12156436_SNP [dm6]	A	G	2.358e^-4	0.599	UTR_3_PRIME Nrx-IV DOWNSTREAM CG9760
3R	16104661	3R_16104661_SNP [dm3] 3R_20278939_SNP [dm6]	C	T	2.359e^-4	0.599	INTRON cic
3L	3922845	3L_3922845_SNP [dm3] 3L_3922845_SNP [dm6]	T	A	2.362e^-4	0.599	INTRON Eip63F-1
X	10428449	X_10428449_SNP [dm3] X_10534416_SNP [dm6]	A	G	2.367e^-4	0.599	INTRON spri
2L	5883138	2L_5883138_SNP [dm3] 2L_5883138_SNP [dm6]	C	G	2.368e^-4	0.599	UPSTREAM CG44574 INTERGENIC
2R	15052883	2R_15052883_SNP [dm3] 2R_19165378_SNP [dm6]	G	A	2.369e^-4	0.599	UTR_5_PRIME CG10737 INTRON CG10737
3L	12337546	3L_12337546_SNP [dm3] 3L_12344446_SNP [dm6]	G	A	2.372e^-4	0.599	INTRON CrzR
3L	10862696	3L_10862696_INS [dm3] 3L_10869596_INS [dm6]	C	CT	2.373e^-4	0.599	UPSTREAM tna INTRON tna
2L	8758545	2L_8758545_SNP [dm3] 2L_8758545_SNP [dm6]	G	C	2.376e^-4	0.599	INTERGENIC
2L	8758719	2L_8758719_SNP [dm3] 2L_8758719_SNP [dm6]	G	A	2.376e^-4	0.599	INTERGENIC
X	17230634	X_17230634_SNP [dm3] X_17336601_SNP [dm6]	C	T	2.381e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8542250	2L_8542250_SNP [dm3] 2L_8542250_SNP [dm6]	G	A	2.384e^-4	0.599	UPSTREAM tRNA:CR31604 DOWNSTREAM CG17834 & 1 other INTRON Sema-1a	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	13657644	2R_13657644_SNP [dm3] 2R_17770139_SNP [dm6]	C	T	2.388e^-4	0.599	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	21890728	X_21890728_SNP [dm3] X_22488892_SNP [dm6]	A	T	2.389e^-4	0.599	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
2L	12622511	2L_12622511_SNP [dm3] 2L_12622511_SNP [dm6]	A	C	2.392e^-4	0.599	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14504611	3L_14504611_SNP [dm3] 3L_14511511_SNP [dm6]	G	A	2.395e^-4	0.599	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
3L	12378611	3L_12378611_SNP [dm3] 3L_12385511_SNP [dm6]	G	T	2.396e^-4	0.599	INTRON Ncc69
3R	10897123	3R_10897123_SNP [dm3] 3R_15071401_SNP [dm6]	A	T	2.401e^-4	0.599	INTRON dpr9	TF binding site mE1_TFBS_cad
2R	9321397	2R_9321397_SNP [dm3] 2R_13433892_SNP [dm6]	A	C	2.401e^-4	0.599	UPSTREAM Ser8 DOWNSTREAM CG30065 INTRON CG42321
3L	8158049	3L_8158049_SNP [dm3] 3L_8164949_SNP [dm6]	T	G	2.402e^-4	0.599	UPSTREAM CG13675 INTRON CG13675
2R	9849817	2R_9849817_SNP [dm3] 2R_13962312_SNP [dm6]	C	T	2.403e^-4	0.599	SYNONYMOUS_CODING Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9493898	3L_9493898_INS [dm3] 3L_9500798_INS [dm6]	T	TGTAT	2.410e^-4	0.599	UTR_5_PRIME path INTRON path	TF binding site BDTNP1_TFBS_twi
3L	20881136	3L_20881136_SNP [dm3] 3L_20888036_SNP [dm6]	T	C	2.413e^-4	0.599	UPSTREAM CR44686 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10121323	3L_10121323_SNP [dm3] 3L_10128223_SNP [dm6]	A	G	2.418e^-4	0.599	INTRON dpr6
3L	23689730	3L_23689730_SNP [dm3] 3L_23696630_SNP [dm6]	C	A	2.419e^-4	0.599	INTERGENIC	transposable element FlyBase
2L	3056210	2L_3056210_SNP [dm3] 2L_3056210_SNP [dm6]	T	C	2.421e^-4	0.599	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8541979	2L_8541979_SNP [dm3] 2L_8541979_SNP [dm6]	A	T	2.424e^-4	0.599	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	5734524	2L_5734524_SNP [dm3] 2L_5734524_SNP [dm6]	C	T	2.425e^-4	0.599	INTRON CG11030 & 1 other
2R	19644683	2R_19644683_SNP [dm3] 2R_23757160_SNP [dm6]	G	A	2.433e^-4	0.599	SYNONYMOUS_CODING CG9850 INTRON CG9850
2R	6082872	2R_6082872_SNP [dm3] 2R_10195367_SNP [dm6]	C	G	2.435e^-4	0.599	INTERGENIC
2R	16736506	2R_16736506_SNP [dm3] 2R_20849001_SNP [dm6]	A	T	2.439e^-4	0.599	INTRON CG17999
2L	8654696	2L_8654696_SNP [dm3] 2L_8654696_SNP [dm6]	G	C	2.442e^-4	0.599	INTRON Sema-1a
3R	18872612	3R_18872612_SNP [dm3] 3R_23046890_SNP [dm6]	T	G	2.448e^-4	0.599	INTRON CG17121
3L	17063295	3L_17063295_SNP [dm3] 3L_17070195_SNP [dm6]	C	T	2.454e^-4	0.599	INTRON Rbp6
3L	10002400	3L_10002400_SNP [dm3] 3L_10009300_SNP [dm6]	T	C	2.455e^-4	0.599	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
3R	11865953	3R_11865953_SNP [dm3] 3R_16040231_SNP [dm6]	T	A	2.457e^-4	0.599	SYNONYMOUS_CODING pnr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16717480	2R_16717480_SNP [dm3] 2R_20829975_SNP [dm6]	C	G	2.457e^-4	0.599	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26293881	3R_26293881_SNP [dm3] 3R_30468159_SNP [dm6]	C	T	2.458e^-4	0.599	INTRON PH4alphaEFB
3L	7723132	3L_7723132_SNP [dm3] 3L_7730032_SNP [dm6]	T	G	2.469e^-4	0.601	SYNONYMOUS_CODING CG8492 INTRON CG32373
2R	16722474	2R_16722474_INS [dm3] 2R_20834969_INS [dm6]	C	CAC	2.473e^-4	0.601	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
3L	16136358	3L_16136358_SNP [dm3] 3L_16143258_SNP [dm6]	G	A	2.484e^-4	0.601	SYNONYMOUS_CODING CG32152 UTR_5_PRIME CG5151 INTRON CG5151	TF binding site mE1_TFBS_sens
2L	11027946	2L_11027946_SNP [dm3] 2L_11027946_SNP [dm6]	A	G	2.486e^-4	0.601	DOWNSTREAM Samuel INTRON Samuel
3R	10141057	3R_10141057_SNP [dm3] 3R_14315335_SNP [dm6]	G	T	2.489e^-4	0.601	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	20497304	3R_20497304_SNP [dm3] 3R_24671582_SNP [dm6]	C	G	2.502e^-4	0.601	INTRON slo
3R	11866439	3R_11866439_SNP [dm3] 3R_16040717_SNP [dm6]	G	T	2.513e^-4	0.601	UTR_3_PRIME pnr
2L	4294524	2L_4294524_SNP [dm3] 2L_4294524_SNP [dm6]	C	G	2.525e^-4	0.601	INTRON tutl
2R	18947448	2R_18947448_SNP [dm3] 2R_23059925_SNP [dm6]	C	T	2.529e^-4	0.601	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13129286	3R_13129286_SNP [dm3] 3R_17303564_SNP [dm6]	G	T	2.530e^-4	0.601	INTERGENIC
3R	10141052	3R_10141052_SNP [dm3] 3R_14315330_SNP [dm6]	T	G	2.532e^-4	0.601	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	7853587	3L_7853587_SNP [dm3] 3L_7860487_SNP [dm6]	A	G	2.533e^-4	0.601	INTRON Pdp1
X	6130299	X_6130299_SNP [dm3] X_6236266_SNP [dm6]	A	G	2.538e^-4	0.601	DOWNSTREAM CG14446 INTERGENIC
2L	9609578	2L_9609578_DEL [dm3] 2L_9609578_DEL [dm6]	CC	C	2.542e^-4	0.601	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	18625628	3L_18625628_SNP [dm3] 3L_18632528_SNP [dm6]	A	T	2.543e^-4	0.601	INTRON MYPT-75D
2L	4886139	2L_4886139_DEL [dm3] 2L_4886139_DEL [dm6]	ATA	A	2.545e^-4	0.601	DOWNSTREAM CG3008 INTERGENIC
2L	9982147	2L_9982147_SNP [dm3] 2L_9982147_SNP [dm6]	C	T	2.547e^-4	0.601	INTERGENIC
3L	23447367	3L_23447367_SNP [dm3] 3L_23454267_SNP [dm6]	G	A	2.547e^-4	0.601	INTERGENIC
3R	8384634	3R_8384634_SNP [dm3] 3R_12558912_SNP [dm6]	A	G	2.548e^-4	0.601	INTRON Octbeta2R
3L	18067010	3L_18067010_SNP [dm3] 3L_18073910_SNP [dm6]	A	G	2.550e^-4	0.601	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
2R	17689342	2R_17689342_SNP [dm3] 2R_21801837_SNP [dm6]	T	C	2.553e^-4	0.601	UPSTREAM CG4386 INTERGENIC
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	2.556e^-4	0.601	INTERGENIC
3L	9582377	3L_9582377_DEL [dm3] 3L_9589277_DEL [dm6]	TT	C	2.560e^-4	0.601	INTRON CG42673
3L	14509427	3L_14509427_SNP [dm3] 3L_14516327_SNP [dm6]	G	C	2.562e^-4	0.601	INTRON bbg
3R	26293883	3R_26293883_SNP [dm3] 3R_30468161_SNP [dm6]	T	A	2.562e^-4	0.601	INTRON PH4alphaEFB
2R	8111287	2R_8111287_SNP [dm3] 2R_12223782_SNP [dm6]	G	A	2.565e^-4	0.601	DOWNSTREAM CG8854 INTERGENIC
3L	2414226	3L_2414226_SNP [dm3] 3L_2414226_SNP [dm6]	T	A	2.571e^-4	0.601	INTRON CG45186
2L	13456951	2L_13456951_SNP [dm3] 2L_13456951_SNP [dm6]	G	C	2.573e^-4	0.601	UPSTREAM CG42809 INTRON CG42784	TF binding site BDTNP1_TFBS_dl
3L	23335266	3L_23335266_SNP [dm3] 3L_23342166_SNP [dm6]	C	A	2.581e^-4	0.601	DOWNSTREAM CG32230 INTRON CG32230
3R	19700947	3R_19700947_SNP [dm3] 3R_23875225_SNP [dm6]	G	A	2.582e^-4	0.601	INTRON Pli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9865823	3R_9865823_SNP [dm3] 3R_14040101_SNP [dm6]	C	T	2.583e^-4	0.601	INTERGENIC
3L	7875428	3L_7875428_SNP [dm3] 3L_7882328_SNP [dm6]	A	G	2.584e^-4	0.601	INTRON CG32365
2R	9363725	2R_9363725_SNP [dm3] 2R_13476220_SNP [dm6]	G	A	2.587e^-4	0.601	INTRON arr
3R	13469978	3R_13469978_SNP [dm3] 3R_17644256_SNP [dm6]	G	A	2.602e^-4	0.601	UPSTREAM CG43175 INTRON CG43175
2L	8541869	2L_8541869_DEL [dm3] 2L_8541869_DEL [dm6]	TA	T	2.607e^-4	0.601	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11476806	2R_11476806_SNP [dm3] 2R_15589301_SNP [dm6]	G	A	2.607e^-4	0.601	INTERGENIC
3R	14836587	3R_14836587_SNP [dm3] 3R_19010865_SNP [dm6]	T	A	2.611e^-4	0.601	INTRON gukh
3R	14836588	3R_14836588_SNP [dm3] 3R_19010866_SNP [dm6]	A	T	2.611e^-4	0.601	INTRON gukh
2L	3927429	2L_3927429_DEL [dm3] 2L_3927429_DEL [dm6]	TT	T	2.612e^-4	0.601	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16610851	2R_16610851_SNP [dm3] 2R_20723346_SNP [dm6]	A	G	2.614e^-4	0.601	DOWNSTREAM CR44660 INTRON dpr
2R	4518432	2R_4518432_SNP [dm3] 2R_8630927_SNP [dm6]	A	G	2.618e^-4	0.601	SYNONYMOUS_CODING CG8635 DOWNSTREAM CG14749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2404606	3L_2404606_SNP [dm3] 3L_2404606_SNP [dm6]	G	A	2.618e^-4	0.601	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9755376	2R_9755376_SNP [dm3] 2R_13867871_SNP [dm6]	A	G	2.631e^-4	0.601	INTRON shot
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	2.633e^-4	0.601	INTRON jigr1
2L	8541883	2L_8541883_INS [dm3] 2L_8541883_INS [dm6]	T	TAT	2.634e^-4	0.601	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	6406490	2R_6406490_SNP [dm3] 2R_10518985_SNP [dm6]	G	C	2.636e^-4	0.601	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola
2L	7124585	2L_7124585_SNP [dm3] 2L_7124585_SNP [dm6]	C	T	2.636e^-4	0.601	INTRON Pvf3
X	21451753	X_21451753_SNP [dm3] X_21580726_SNP [dm6]	G	A	2.638e^-4	0.601	INTERGENIC
2L	9212325	2L_9212325_SNP [dm3] 2L_9212325_SNP [dm6]	T	C	2.643e^-4	0.601	INTRON tai
2R	16723112	2R_16723112_SNP [dm3] 2R_20835607_SNP [dm6]	T	A	2.648e^-4	0.601	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	21890729	X_21890729_SNP [dm3] X_22488893_SNP [dm6]	A	C	2.649e^-4	0.601	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
X	1776718	X_1776718_SNP [dm3] X_1882685_SNP [dm6]	T	C	2.657e^-4	0.601	SPLICE_SITE_REGION trr SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad
3L	19386332	3L_19386332_DEL [dm3] 3L_19393232_DEL [dm6]	TTCAGT	T	2.661e^-4	0.601	INTRON CG32206
X	15860198	X_15860198_SNP [dm3] X_15966165_SNP [dm6]	G	C	2.667e^-4	0.601	UPSTREAM mir-927 INTRON mmd
3R	20587506	3R_20587506_SNP [dm3] 3R_24761784_SNP [dm6]	A	G	2.673e^-4	0.601	UTR_5_PRIME AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6981819	3L_6981819_SNP [dm3] 3L_6988719_SNP [dm6]	C	T	2.675e^-4	0.601	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16723567	2R_16723567_SNP [dm3] 2R_20836062_SNP [dm6]	A	G	2.678e^-4	0.601	UPSTREAM insc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6083437	2R_6083437_SNP [dm3] 2R_10195932_SNP [dm6]	C	A	2.687e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15238263	3L_15238263_SNP [dm3] 3L_15245163_SNP [dm6]	A	G	2.691e^-4	0.601	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6808738	3L_6808738_SNP [dm3] 3L_6815638_SNP [dm6]	A	G	2.696e^-4	0.601	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6308602	3L_6308602_SNP [dm3] 3L_6315502_SNP [dm6]	C	T	2.698e^-4	0.601	INTERGENIC	transposable element FlyBase
3R	26954853	3R_26954853_SNP [dm3] 3R_31129131_SNP [dm6]	A	G	2.705e^-4	0.601	SYNONYMOUS_CODING CG15556
2L	21821827	2L_21821827_SNP [dm3] 2L_21821827_SNP [dm6]	C	T	2.709e^-4	0.601	EXON CR44786
3R	25947740	3R_25947740_DEL [dm3] 3R_30122018_DEL [dm6]	ATTGTA	A	2.709e^-4	0.601	UTR_3_PRIME CG45072 DOWNSTREAM CG45072 & 1 other INTRAGENIC CG45072 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1
3R	20587711	3R_20587711_SNP [dm3] 3R_24761989_SNP [dm6]	G	A	2.711e^-4	0.601	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16576819	2L_16576819_SNP [dm3] 2L_16576819_SNP [dm6]	T	A	2.712e^-4	0.601	INTRON CG42389
3L	2400019	3L_2400019_SNP [dm3] 3L_2400019_SNP [dm6]	T	C	2.712e^-4	0.601	UPSTREAM CG45186 INTRON CG45186
2L	13449248	2L_13449248_SNP [dm3] 2L_13449248_SNP [dm6]	G	A	2.717e^-4	0.601	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
2L	6282199	2L_6282199_SNP [dm3] 2L_6282199_SNP [dm6]	A	C	2.738e^-4	0.601	INTRON Ddr	TF binding site mE1_TFBS_chinmo
3L	2402378	3L_2402378_SNP [dm3] 3L_2402378_SNP [dm6]	G	A	2.738e^-4	0.601	INTRON CG45186	TF binding site mE1_TFBS_cad
3R	9747974	3R_9747974_DEL [dm3] 3R_13922252_DEL [dm6]	CCCCGCACCACGCAT...	A	2.746e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11861202	3R_11861202_SNP [dm3] 3R_16035480_SNP [dm6]	A	G	2.747e^-4	0.601	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3L	14511676	3L_14511676_SNP [dm3] 3L_14518576_SNP [dm6]	T	C	2.747e^-4	0.601	DOWNSTREAM CG9592 INTRON bbg
3R	9256853	3R_9256853_SNP [dm3] 3R_13431131_SNP [dm6]	A	C	2.747e^-4	0.601	INTRON yrt
2L	9620500	2L_9620500_SNP [dm3] 2L_9620500_SNP [dm6]	C	T	2.751e^-4	0.601	INTRON GlcAT-S
2R	13972970	2R_13972970_SNP [dm3] 2R_18085465_SNP [dm6]	T	A	2.753e^-4	0.601	INTRON CG34386
2R	4456720	2R_4456720_SNP [dm3] 2R_8569215_SNP [dm6]	A	T	2.756e^-4	0.601	EXON Cyp6a15Psi
3R	11441365	3R_11441365_SNP [dm3] 3R_15615643_SNP [dm6]	G	A	2.760e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	8541878	2L_8541878_INS [dm3] 2L_8541878_INS [dm6]	A	AC	2.762e^-4	0.601	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	904452	X_904452_SNP [dm3] X_1010419_SNP [dm6]	T	C	2.765e^-4	0.601	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
X	13307201	X_13307201_SNP [dm3] X_13413168_SNP [dm6]	C	T	2.767e^-4	0.601	UPSTREAM Set2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	23388036	3L_23388036_SNP [dm3] 3L_23394936_SNP [dm6]	A	T	2.768e^-4	0.601	INTERGENIC
2R	14317830	2R_14317830_SNP [dm3] 2R_18430325_SNP [dm6]	C	A	2.779e^-4	0.601	UTR_3_PRIME CG12263 & 1 other DOWNSTREAM CG30118
3R	8374298	3R_8374298_SNP [dm3] 3R_12548576_SNP [dm6]	C	T	2.785e^-4	0.601	UPSTREAM Octbeta3R INTERGENIC
2R	9684680	2R_9684680_SNP [dm3] 2R_13797175_SNP [dm6]	A	T	2.790e^-4	0.601	INTRON Cpr50Cb
3R	10854590	3R_10854590_SNP [dm3] 3R_15028868_SNP [dm6]	C	T	2.791e^-4	0.601	INTERGENIC
2R	11005310	2R_11005310_SNP [dm3] 2R_15117805_SNP [dm6]	A	T	2.796e^-4	0.601	INTRON chn	TF binding site BDTNP1_TFBS_dl
3R	16195257	3R_16195257_SNP [dm3] 3R_20369535_SNP [dm6]	G	T	2.798e^-4	0.601	INTERGENIC
3R	25898843	3R_25898843_SNP [dm3] 3R_30073121_SNP [dm6]	C	T	2.803e^-4	0.601	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16736339	2R_16736339_SNP [dm3] 2R_20848834_SNP [dm6]	G	A	2.803e^-4	0.601	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
3L	23507917	3L_23507917_SNP [dm3] 3L_23514817_SNP [dm6]	T	G	2.806e^-4	0.601	INTERGENIC	transposable element FlyBase
3L	18069505	3L_18069505_SNP [dm3] 3L_18076405_SNP [dm6]	C	A	2.815e^-4	0.601	INTERGENIC
2L	803830	2L_803830_SNP [dm3] 2L_803830_SNP [dm6]	A	G	2.826e^-4	0.601	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8429092	3L_8429092_SNP [dm3] 3L_8435992_SNP [dm6]	T	A	2.834e^-4	0.601	INTRON Unr
3L	8429093	3L_8429093_SNP [dm3] 3L_8435993_SNP [dm6]	G	T	2.834e^-4	0.601	INTRON Unr
2R	19004045	2R_19004045_SNP [dm3] 2R_23116522_SNP [dm6]	T	C	2.838e^-4	0.601	INTERGENIC
2L	4928673	2L_4928673_SNP [dm3] 2L_4928673_SNP [dm6]	C	T	2.839e^-4	0.601	UPSTREAM hoe1 INTRON hoe1
X	21890766	X_21890766_SNP [dm3] X_22488930_SNP [dm6]	T	G	2.842e^-4	0.601	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
2L	9605238	2L_9605238_SNP [dm3] 2L_9605238_SNP [dm6]	T	A	2.844e^-4	0.601	INTERGENIC	regulatory region REDfly_CRMs
3L	8098954	3L_8098954_SNP [dm3] 3L_8105854_SNP [dm6]	C	A	2.854e^-4	0.601	UTR_3_PRIME Ect4 INTRON Ect4
2L	9609992	2L_9609992_SNP [dm3] 2L_9609992_SNP [dm6]	C	A	2.856e^-4	0.601	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5080728	2L_5080728_SNP [dm3] 2L_5080728_SNP [dm6]	T	C	2.856e^-4	0.601	INTRON pgant5
2L	4388998	2L_4388998_SNP [dm3] 2L_4388998_SNP [dm6]	A	C	2.861e^-4	0.601	INTRON Tps1
3L	23387786	3L_23387786_SNP [dm3] 3L_23394686_SNP [dm6]	A	T	2.863e^-4	0.601	INTERGENIC
3R	5696244	3R_5696244_SNP [dm3] 3R_9870522_SNP [dm6]	T	A	2.864e^-4	0.601	INTERGENIC
2L	9623372	2L_9623372_SNP [dm3] 2L_9623372_SNP [dm6]	T	C	2.867e^-4	0.601	DOWNSTREAM GlcAT-S INTERGENIC
X	4125092	X_4125092_SNP [dm3] X_4231059_SNP [dm6]	T	G	2.867e^-4	0.601	INTERGENIC
X	19897009	X_19897009_DEL [dm3] X_20002976_DEL [dm6]	GTGG	G	2.867e^-4	0.601	UPSTREAM CG17003 INTERGENIC
2R	20160094	2R_20160094_SNP [dm3] 2R_24272571_SNP [dm6]	G	C	2.870e^-4	0.601	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4565957	X_4565957_SNP [dm3] X_4671924_SNP [dm6]	T	C	2.873e^-4	0.601	INTRON rap
2R	6135133	2R_6135133_SNP [dm3] 2R_10247628_SNP [dm6]	A	T	2.880e^-4	0.601	UPSTREAM CG12914 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	14143433	3L_14143433_SNP [dm3] 3L_14150333_SNP [dm6]	G	T	2.881e^-4	0.601	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3R	8372463	3R_8372463_SNP [dm3] 3R_12546741_SNP [dm6]	C	T	2.884e^-4	0.601	INTRON Octbeta3R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11441301	3R_11441301_SNP [dm3] 3R_15615579_SNP [dm6]	G	A	2.893e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	8541868	2L_8541868_SNP [dm3] 2L_8541868_SNP [dm6]	T	G	2.905e^-4	0.601	UPSTREAM Sema-1a & 1 other DOWNSTREAM CG17834 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6308490	3L_6308490_SNP [dm3] 3L_6315390_SNP [dm6]	T	G	2.907e^-4	0.601	INTERGENIC	transposable element FlyBase
2R	15290741	2R_15290741_SNP [dm3] 2R_19403236_SNP [dm6]	C	A	2.910e^-4	0.601	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21890754	X_21890754_SNP [dm3] X_22488918_SNP [dm6]	A	T	2.912e^-4	0.601	INTRON l_1_G0196 EXON CR43493	transposable element FlyBase
3L	23780916	3L_23780916_SNP [dm3] 3L_23787816_SNP [dm6]	A	G	2.913e^-4	0.601	DOWNSTREAM CG43968 INTERGENIC	transposable element FlyBase
2R	9440383	2R_9440383_SNP [dm3] 2R_13552878_SNP [dm6]	T	C	2.914e^-4	0.601	UPSTREAM CG33156 INTRON CG33156
3L	12440955	3L_12440955_SNP [dm3] 3L_12447855_SNP [dm6]	C	T	2.917e^-4	0.601	INTERGENIC
3R	14542650	3R_14542650_SNP [dm3] 3R_18716928_SNP [dm6]	T	G	2.920e^-4	0.601	UTR_3_PRIME VAChT INTRON Cha
3L	18180863	3L_18180863_SNP [dm3] 3L_18187763_SNP [dm6]	T	G	2.923e^-4	0.601	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10854050	3R_10854050_SNP [dm3] 3R_15028328_SNP [dm6]	C	T	2.925e^-4	0.601	INTERGENIC
3L	12487398	3L_12487398_SNP [dm3] 3L_12494298_SNP [dm6]	C	A	2.935e^-4	0.601	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12487401	3L_12487401_SNP [dm3] 3L_12494301_SNP [dm6]	A	G	2.935e^-4	0.601	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10393082	2L_10393082_DEL [dm3] 2L_10393082_DEL [dm6]	AGAATCGTTAAGCCA...	A	2.941e^-4	0.601	UTR_3_PRIME da DOWNSTREAM da & 1 other
3R	5742584	3R_5742584_SNP [dm3] 3R_9916862_SNP [dm6]	C	T	2.953e^-4	0.601	INTRON Glut4EF
2R	10464458	2R_10464458_SNP [dm3] 2R_14576953_SNP [dm6]	G	A	2.954e^-4	0.601	INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7164917	2R_7164917_SNP [dm3] 2R_11277412_SNP [dm6]	A	G	2.955e^-4	0.601	DOWNSTREAM Cpr47Eg INTERGENIC
3R	9570793	3R_9570793_SNP [dm3] 3R_13745071_SNP [dm6]	G	T	2.956e^-4	0.601	INTRON CG34383
X	4139254	X_4139254_SNP [dm3] X_4245221_SNP [dm6]	A	G	2.958e^-4	0.601	NON_SYNONYMOUS_CODING Muc4B	TF binding site mE1_TFBS_sens
3R	7526660	3R_7526660_SNP [dm3] 3R_11700938_SNP [dm6]	G	C	2.964e^-4	0.601	NON_SYNONYMOUS_CODING CG14718	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8898215	2R_8898215_SNP [dm3] 2R_13010710_SNP [dm6]	C	T	2.965e^-4	0.601	INTERGENIC
3L	10220420	3L_10220420_SNP [dm3] 3L_10227320_SNP [dm6]	A	G	2.972e^-4	0.601	INTERGENIC
3L	10220422	3L_10220422_DEL [dm3] 3L_10227322_DEL [dm6]	TT	A	2.972e^-4	0.601	INTERGENIC
3L	10220426	3L_10220426_SNP [dm3] 3L_10227326_SNP [dm6]	T	C	2.972e^-4	0.601	INTERGENIC
3R	8382415	3R_8382415_SNP [dm3] 3R_12556693_SNP [dm6]	C	T	2.978e^-4	0.601	INTRON Octbeta2R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9586572	X_9586572_SNP [dm3] X_9692539_SNP [dm6]	C	G	2.981e^-4	0.601	UPSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	9760960	2L_9760960_SNP [dm3] 2L_9760960_SNP [dm6]	T	C	2.982e^-4	0.601	SYNONYMOUS_CODING zf30C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	2.982e^-4	0.601	UTR_3_PRIME lola INTRON lola
3R	18713228	3R_18713228_SNP [dm3] 3R_22887506_SNP [dm6]	C	T	2.987e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25313918	3R_25313918_SNP [dm3] 3R_29488196_SNP [dm6]	T	A	2.992e^-4	0.601	SYNONYMOUS_CODING CG2321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18797668	2R_18797668_SNP [dm3] 2R_22910145_SNP [dm6]	C	T	2.994e^-4	0.601	INTRON nahoda
3L	2400021	3L_2400021_SNP [dm3] 3L_2400021_SNP [dm6]	G	T	2.997e^-4	0.601	UPSTREAM CG45186 INTRON CG45186
3R	14821633	3R_14821633_SNP [dm3] 3R_18995911_SNP [dm6]	C	T	2.999e^-4	0.601	INTRON gukh
2R	8259853	2R_8259853_SNP [dm3] 2R_12372348_SNP [dm6]	C	T	3.000e^-4	0.601	NON_SYNONYMOUS_CODING CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13377457	3L_13377457_SNP [dm3] 3L_13384357_SNP [dm6]	C	A	3.006e^-4	0.601	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	22001716	3L_22001716_SNP [dm3] 3L_22008616_SNP [dm6]	T	A	3.015e^-4	0.601	INTERGENIC
2R	13766399	2R_13766399_SNP [dm3] 2R_17878894_SNP [dm6]	G	T	3.017e^-4	0.601	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
X	2886034	X_2886034_SNP [dm3] X_2992001_SNP [dm6]	C	A	3.025e^-4	0.601	INTRON kirre
2L	16428907	2L_16428907_SNP [dm3] 2L_16428907_SNP [dm6]	C	T	3.028e^-4	0.601	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10860276	3L_10860276_DEL [dm3] 3L_10867176_DEL [dm6]	TGCTCACCCGCCATCCA...	T	3.029e^-4	0.601	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9582384	3L_9582384_SNP [dm3] 3L_9589284_SNP [dm6]	A	C	3.029e^-4	0.601	INTRON CG42673
3L	6805404	3L_6805404_SNP [dm3] 3L_6812304_SNP [dm6]	T	C	3.031e^-4	0.601	INTERGENIC
3R	10138671	3R_10138671_SNP [dm3] 3R_14312949_SNP [dm6]	T	C	3.035e^-4	0.601	SYNONYMOUS_CODING CG31321
2R	14439830	2R_14439830_SNP [dm3] 2R_18552325_SNP [dm6]	G	C	3.038e^-4	0.601	INTERGENIC
2R	14439880	2R_14439880_SNP [dm3] 2R_18552375_SNP [dm6]	A	G	3.038e^-4	0.601	INTERGENIC
2L	13529846	2L_13529846_SNP [dm3] 2L_13529846_SNP [dm6]	C	A	3.041e^-4	0.601	UPSTREAM CG33642 DOWNSTREAM CG33641 INTRON B4
3R	10140983	3R_10140983_SNP [dm3] 3R_14315261_SNP [dm6]	A	T	3.051e^-4	0.601	UPSTREAM pr-set7 DOWNSTREAM CG31321 INTRON Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	8372414	3R_8372414_SNP [dm3] 3R_12546692_SNP [dm6]	G	A	3.053e^-4	0.601	INTRON Octbeta3R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10300423	X_10300423_SNP [dm3] X_10406390_SNP [dm6]	G	A	3.054e^-4	0.601	SYNONYMOUS_CODING flw
3R	1293667	3R_1293667_SNP [dm3] 3R_5467945_SNP [dm6]	C	T	3.056e^-4	0.601	UTR_5_PRIME CG12162 UPSTREAM RpL35A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10807704	3R_10807704_SNP [dm3] 3R_14981982_SNP [dm6]	G	C	3.061e^-4	0.601	INTERGENIC
2L	6265596	2L_6265596_SNP [dm3] 2L_6265596_SNP [dm6]	A	G	3.064e^-4	0.601	INTRON Ddr
2R	14439623	2R_14439623_SNP [dm3] 2R_18552118_SNP [dm6]	T	C	3.069e^-4	0.601	INTERGENIC
2L	16868591	2L_16868591_SNP [dm3] 2L_16868591_SNP [dm6]	A	C	3.070e^-4	0.601	UPSTREAM CR31781 INTERGENIC
3R	13236774	3R_13236774_SNP [dm3] 3R_17411052_SNP [dm6]	G	A	3.077e^-4	0.601	UPSTREAM CG5863 DOWNSTREAM CG5860 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3715753	2L_3715753_SNP [dm3] 2L_3715753_SNP [dm6]	C	T	3.079e^-4	0.601	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_sens
2R	17887927	2R_17887927_SNP [dm3] 2R_22000422_SNP [dm6]	C	T	3.079e^-4	0.601	INTRON CG34370
2L	6841503	2L_6841503_SNP [dm3] 2L_6841503_SNP [dm6]	T	A	3.083e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25986435	3R_25986435_SNP [dm3] 3R_30160713_SNP [dm6]	G	A	3.084e^-4	0.601	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8891584	3L_8891584_SNP [dm3] 3L_8898484_SNP [dm6]	C	T	3.090e^-4	0.601	INTRON TrpA1
3R	4617067	3R_4617067_SNP [dm3] 3R_8791345_SNP [dm6]	T	C	3.091e^-4	0.601	INTRON Pif1A & 1 other
3L	23440520	3L_23440520_SNP [dm3] 3L_23447420_SNP [dm6]	T	G	3.093e^-4	0.601	INTERGENIC	transposable element FlyBase
3L	16675012	3L_16675012_DEL [dm3] 3L_16681912_DEL [dm6]	CCTCAGTGGCTTACTCTTAA...	C	3.095e^-4	0.601	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
2L	3927061	2L_3927061_SNP [dm3] 2L_3927061_SNP [dm6]	C	T	3.096e^-4	0.601	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8896450	3L_8896450_SNP [dm3] 3L_8903350_SNP [dm6]	G	A	3.102e^-4	0.601	INTRON TrpA1 EXON tRNA:T:Psi
X	4125116	X_4125116_SNP [dm3] X_4231083_SNP [dm6]	A	T	3.102e^-4	0.601	INTERGENIC
2L	6905242	2L_6905242_SNP [dm3] 2L_6905242_SNP [dm6]	G	T	3.108e^-4	0.601	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad
3L	15938963	3L_15938963_SNP [dm3] 3L_15945863_SNP [dm6]	G	C	3.108e^-4	0.601	INTRON Pka-C3
2L	14719140	2L_14719140_SNP [dm3] 2L_14719140_SNP [dm6]	G	A	3.109e^-4	0.601	INTERGENIC
3R	10135854	3R_10135854_SNP [dm3] 3R_14310132_SNP [dm6]	C	G	3.111e^-4	0.601	UTR_3_PRIME RpII15 UPSTREAM CG31321 DOWNSTREAM RpII15
2R	19052230	2R_19052230_SNP [dm3] 2R_23164707_SNP [dm6]	C	G	3.115e^-4	0.601	SYNONYMOUS_CODING CG34371
3L	8892127	3L_8892127_SNP [dm3] 3L_8899027_SNP [dm6]	C	T	3.118e^-4	0.601	INTRON TrpA1
2L	13263583	2L_13263583_SNP [dm3] 2L_13263583_SNP [dm6]	C	T	3.120e^-4	0.601	INTRON CG44085
2R	16993661	2R_16993661_DEL [dm3] 2R_21106156_DEL [dm6]	GCTCA	G	3.131e^-4	0.601	INTRON ktub
3R	4717949	3R_4717949_SNP [dm3] 3R_8892227_SNP [dm6]	G	T	3.140e^-4	0.601	INTRON pyd
3L	14556011	3L_14556011_SNP [dm3] 3L_14562911_SNP [dm6]	C	T	3.145e^-4	0.601	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3L	16529501	3L_16529501_SNP [dm3] 3L_16536401_SNP [dm6]	G	T	3.146e^-4	0.601	INTRON CG43373
2L	921985	2L_921985_SNP [dm3] 2L_921985_SNP [dm6]	A	C	3.149e^-4	0.601	UPSTREAM CG4341 INTERGENIC
3R	15197020	3R_15197020_INS [dm3] 3R_19371298_INS [dm6]	A	AGGA	3.153e^-4	0.601	INTRON Ino80
2L	9877800	2L_9877800_SNP [dm3] 2L_9877800_SNP [dm6]	C	T	3.154e^-4	0.601	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
2L	3276126	2L_3276126_SNP [dm3] 2L_3276126_SNP [dm6]	G	C	3.157e^-4	0.601	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13657696	2R_13657696_SNP [dm3] 2R_17770191_SNP [dm6]	C	T	3.163e^-4	0.601	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13124271	3R_13124271_SNP [dm3] 3R_17298549_SNP [dm6]	G	T	3.171e^-4	0.601	INTERGENIC
3L	4107947	3L_4107947_SNP [dm3] 3L_4107947_SNP [dm6]	C	A	3.176e^-4	0.601	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18685271	3L_18685271_SNP [dm3] 3L_18692171_SNP [dm6]	T	C	3.177e^-4	0.601	INTERGENIC
3R	10854053	3R_10854053_SNP [dm3] 3R_15028331_SNP [dm6]	T	C	3.178e^-4	0.601	INTERGENIC
3L	5985252	3L_5985252_SNP [dm3] 3L_5992152_SNP [dm6]	A	G	3.178e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8383969	3R_8383969_SNP [dm3] 3R_12558247_SNP [dm6]	T	G	3.186e^-4	0.601	INTRON Octbeta2R
2R	15892374	2R_15892374_SNP [dm3] 2R_20004869_SNP [dm6]	G	A	3.186e^-4	0.601	SYNONYMOUS_CODING CG16898	TF binding site mE1_TFBS_HSA
X	6535912	X_6535912_SNP [dm3] X_6641879_SNP [dm6]	G	T	3.189e^-4	0.601	INTRON pigs
2R	13748880	2R_13748880_SNP [dm3] 2R_17861375_SNP [dm6]	G	A	3.192e^-4	0.601	SYNONYMOUS_CODING CG14490 UTR_3_PRIME thr DOWNSTREAM thr & 1 other	TF binding site mE1_TFBS_HSA
X	17210042	X_17210042_SNP [dm3] X_17316009_SNP [dm6]	A	T	3.192e^-4	0.601	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10143402	3L_10143402_SNP [dm3] 3L_10150302_SNP [dm6]	G	C	3.195e^-4	0.601	INTRON dpr10
2R	18955693	2R_18955693_SNP [dm3] 2R_23068170_SNP [dm6]	A	T	3.200e^-4	0.601	DOWNSTREAM PPO3 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4139333	X_4139333_SNP [dm3] X_4245300_SNP [dm6]	T	A	3.201e^-4	0.601	NON_SYNONYMOUS_CODING Muc4B	TF binding site mE1_TFBS_sens
3L	14501929	3L_14501929_SNP [dm3] 3L_14508829_SNP [dm6]	T	G	3.208e^-4	0.601	NON_SYNONYMOUS_CODING bbg
3L	23395672	3L_23395672_SNP [dm3] 3L_23402572_SNP [dm6]	G	T	3.208e^-4	0.601	INTERGENIC
3R	15737189	3R_15737189_SNP [dm3] 3R_19911467_SNP [dm6]	G	A	3.209e^-4	0.601	NON_SYNONYMOUS_CODING RhoGAP92B
2R	14439825	2R_14439825_SNP [dm3] 2R_18552320_SNP [dm6]	T	C	3.213e^-4	0.601	INTERGENIC
2R	13755189	2R_13755189_SNP [dm3] 2R_17867684_SNP [dm6]	G	A	3.213e^-4	0.601	INTRON Mapmodulin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11866709	3R_11866709_SNP [dm3] 3R_16040987_SNP [dm6]	T	C	3.213e^-4	0.601	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	16693877	2R_16693877_SNP [dm3] 2R_20806372_SNP [dm6]	C	G	3.216e^-4	0.601	INTERGENIC
3L	1901070	3L_1901070_SNP [dm3] 3L_1901070_SNP [dm6]	G	A	3.218e^-4	0.601	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	12759112	3R_12759112_SNP [dm3] 3R_16933390_SNP [dm6]	T	A	3.218e^-4	0.601	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	3028226	3L_3028226_SNP [dm3] 3L_3028226_SNP [dm6]	A	G	3.219e^-4	0.601	INTERGENIC
3R	8419416	3R_8419416_DEL [dm3] 3R_12593694_DEL [dm6]	AAT	GG	3.221e^-4	0.601	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3R	8419423	3R_8419423_DEL [dm3] 3R_12593701_DEL [dm6]	CAGT	G	3.221e^-4	0.601	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3R	8419429	3R_8419429_DEL [dm3] 3R_12593707_DEL [dm6]	ACAC	A	3.221e^-4	0.601	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3R	8419435	3R_8419435_MNP [dm3] 3R_12593713_MNP [dm6]	AACG	CCAA	3.221e^-4	0.601	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	13657867	2R_13657867_SNP [dm3] 2R_17770362_SNP [dm6]	C	A	3.227e^-4	0.601	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14211265	2L_14211265_SNP [dm3] 2L_14211265_SNP [dm6]	A	C	3.231e^-4	0.601	INTRON Dyrk2
3L	16533780	3L_16533780_SNP [dm3] 3L_16540680_SNP [dm6]	T	A	3.231e^-4	0.601	INTRON CG43373
3R	13941927	3R_13941927_SNP [dm3] 3R_18116205_SNP [dm6]	T	G	3.232e^-4	0.601	INTRON sr
3R	24169573	3R_24169573_SNP [dm3] 3R_28343851_SNP [dm6]	C	T	3.236e^-4	0.601	SYNONYMOUS_CODING Moca-cyp	TF binding site mE1_TFBS_cad
X	16796145	X_16796145_SNP [dm3] X_16902112_SNP [dm6]	T	G	3.238e^-4	0.601	EXON CR44754
2L	21962291	2L_21962291_SNP [dm3] 2L_21962291_SNP [dm6]	T	A	3.240e^-4	0.601	INTERGENIC
3L	14504600	3L_14504600_SNP [dm3] 3L_14511500_SNP [dm6]	G	A	3.246e^-4	0.601	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
2R	9177569	2R_9177569_SNP [dm3] 2R_13290064_SNP [dm6]	T	C	3.252e^-4	0.601	INTRON Dh31-R

Missing results

By genomic position
Variant impact
Gene name

mn_StartleRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results