DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.340e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.027	0.0491

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1747 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7088396	2L_7088396_SNP [dm3] 2L_7088396_SNP [dm6]	A	T	1.711e^-7	0.169	INTERGENIC
2L	7087064	2L_7087064_SNP [dm3] 2L_7087064_SNP [dm6]	A	G	1.805e^-7	0.169	INTERGENIC
2L	4417618	2L_4417618_SNP [dm3] 2L_4417618_SNP [dm6]	T	A	6.362e^-7	0.301	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2L	8558451	2L_8558451_SNP [dm3] 2L_8558451_SNP [dm6]	G	A	8.393e^-7	0.301	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7087068	2L_7087068_SNP [dm3] 2L_7087068_SNP [dm6]	G	T	8.592e^-7	0.301	INTERGENIC
3R	6246488	3R_6246488_DEL [dm3] 3R_10420766_DEL [dm6]	AA	A	1.005e^-6	0.301	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5340396	X_5340396_SNP [dm3] X_5446363_SNP [dm6]	A	G	1.439e^-6	0.301	UPSTREAM SPR INTERGENIC
2L	13139091	2L_13139091_SNP [dm3] 2L_13139091_SNP [dm6]	C	G	1.475e^-6	0.301	INTERGENIC
2L	7087010	2L_7087010_SNP [dm3] 2L_7087010_SNP [dm6]	A	C	1.595e^-6	0.301	INTERGENIC
3L	17811196	3L_17811196_SNP [dm3] 3L_17818096_SNP [dm6]	G	A	1.603e^-6	0.301	NON_SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
3L	17811191	3L_17811191_SNP [dm3] 3L_17818091_SNP [dm6]	G	A	1.818e^-6	0.31	SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
2L	7088810	2L_7088810_SNP [dm3] 2L_7088810_SNP [dm6]	C	A	2.724e^-6	0.426	INTERGENIC
X	5619040	X_5619040_SNP [dm3] X_5725007_SNP [dm6]	A	G	3.207e^-6	0.438	INTRON CG32758
X	5340406	X_5340406_SNP [dm3] X_5446373_SNP [dm6]	A	G	3.267e^-6	0.438	UPSTREAM SPR INTERGENIC
X	5340409	X_5340409_DEL [dm3] X_5446376_DEL [dm6]	ACAAG	A	3.869e^-6	0.484	UPSTREAM SPR INTERGENIC
3L	4101331	3L_4101331_SNP [dm3] 3L_4101331_SNP [dm6]	T	A	5.223e^-6	0.566	UPSTREAM CG14995 INTRON CG14995
2L	16610426	2L_16610426_SNP [dm3] 2L_16610426_SNP [dm6]	C	T	6.536e^-6	0.566	DOWNSTREAM CG4631 INTRON CG42389
2L	4355538	2L_4355538_SNP [dm3] 2L_4355538_SNP [dm6]	A	C	6.674e^-6	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16610431	2L_16610431_SNP [dm3] 2L_16610431_SNP [dm6]	A	G	7.264e^-6	0.566	DOWNSTREAM CG4631 INTRON CG42389
X	5340404	X_5340404_SNP [dm3] X_5446371_SNP [dm6]	G	C	7.308e^-6	0.566	UPSTREAM SPR INTERGENIC
2L	13139191	2L_13139191_SNP [dm3] 2L_13139191_SNP [dm6]	T	C	7.446e^-6	0.566	INTERGENIC
2L	13139202	2L_13139202_SNP [dm3] 2L_13139202_SNP [dm6]	G	A	7.446e^-6	0.566	INTERGENIC
2R	15383714	2R_15383714_SNP [dm3] 2R_19496209_SNP [dm6]	G	A	7.765e^-6	0.566	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24787842	3R_24787842_SNP [dm3] 3R_28962120_SNP [dm6]	T	A	8.250e^-6	0.566	INTRON CG14521
2L	4418320	2L_4418320_SNP [dm3] 2L_4418320_SNP [dm6]	T	A	8.314e^-6	0.566	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	17980009	2L_17980009_SNP [dm3] 2L_17980009_SNP [dm6]	G	A	8.639e^-6	0.566	SYNONYMOUS_CODING btv
2L	12601442	2L_12601442_SNP [dm3] 2L_12601442_SNP [dm6]	C	T	9.094e^-6	0.566	INTRON nub
3R	23055674	3R_23055674_SNP [dm3] 3R_27229952_SNP [dm6]	T	C	9.304e^-6	0.566	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4402734	2L_4402734_SNP [dm3] 2L_4402734_SNP [dm6]	C	T	9.333e^-6	0.566	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad
2R	15383711	2R_15383711_SNP [dm3] 2R_19496206_SNP [dm6]	T	A	9.519e^-6	0.566	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3479500	2L_3479500_SNP [dm3] 2L_3479500_SNP [dm6]	G	T	9.639e^-6	0.566	UTR_3_PRIME Thor	TF binding site BDTNP1_TFBS_dl
2L	7088624	2L_7088624_SNP [dm3] 2L_7088624_SNP [dm6]	T	C	9.950e^-6	0.566	INTERGENIC
2L	10660153	2L_10660153_DEL [dm3] 2L_10660153_DEL [dm6]	TAAGT	T	9.964e^-6	0.566	INTERGENIC
3L	15693765	3L_15693765_SNP [dm3] 3L_15700665_SNP [dm6]	A	G	1.103e^-5	0.608	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	13139218	2L_13139218_SNP [dm3] 2L_13139218_SNP [dm6]	G	T	1.192e^-5	0.634	INTERGENIC
X	5340403	X_5340403_SNP [dm3] X_5446370_SNP [dm6]	A	C	1.217e^-5	0.634	UPSTREAM SPR INTERGENIC
3L	8365377	3L_8365377_SNP [dm3] 3L_8372277_SNP [dm6]	T	C	1.288e^-5	0.653	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4730324	X_4730324_SNP [dm3] X_4836291_SNP [dm6]	G	A	1.401e^-5	0.692	INTERGENIC
2L	13139173	2L_13139173_SNP [dm3] 2L_13139173_SNP [dm6]	G	T	1.572e^-5	0.737	INTERGENIC
2L	13139177	2L_13139177_SNP [dm3] 2L_13139177_SNP [dm6]	T	A	1.572e^-5	0.737	INTERGENIC
2L	7088012	2L_7088012_SNP [dm3] 2L_7088012_SNP [dm6]	G	C	1.792e^-5	0.8	INTERGENIC
2R	15383693	2R_15383693_SNP [dm3] 2R_19496188_SNP [dm6]	C	T	1.827e^-5	0.8	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9640698	2L_9640698_SNP [dm3] 2L_9640698_SNP [dm6]	A	T	1.834e^-5	0.8	INTRON Apoltp
2R	8370724	2R_8370724_SNP [dm3] 2R_12483219_SNP [dm6]	A	T	1.972e^-5	0.816	INTRON Dh44-R2
2L	2390867	2L_2390867_SNP [dm3] 2L_2390867_SNP [dm6]	G	A	1.974e^-5	0.816	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12991953	2L_12991953_SNP [dm3] 2L_12991953_SNP [dm6]	G	T	2.118e^-5	0.816	INTERGENIC
2L	11465117	2L_11465117_SNP [dm3] 2L_11465117_SNP [dm6]	G	C	2.128e^-5	0.816	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	20571198	3L_20571198_SNP [dm3] 3L_20578098_SNP [dm6]	G	T	2.172e^-5	0.816	INTERGENIC
2L	9545430	2L_9545430_SNP [dm3] 2L_9545430_SNP [dm6]	T	G	2.309e^-5	0.816	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3R	22688749	3R_22688749_SNP [dm3] 3R_26863027_SNP [dm6]	T	C	2.330e^-5	0.816	UPSTREAM IntS12 & 1 other INTRON Lerp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11765293	2R_11765293_SNP [dm3] 2R_15877788_SNP [dm6]	G	A	2.390e^-5	0.816	INTRON sli
2L	9547584	2L_9547584_SNP [dm3] 2L_9547584_SNP [dm6]	T	C	2.426e^-5	0.816	DOWNSTREAM jp & 1 other INTERGENIC	transposable element FlyBase
2L	5797038	2L_5797038_SNP [dm3] 2L_5797038_SNP [dm6]	A	G	2.473e^-5	0.816	INTRON CG9171
2L	2739055	2L_2739055_SNP [dm3] 2L_2739055_SNP [dm6]	G	A	2.496e^-5	0.816	UPSTREAM Hrs INTRON CG31689
2L	12601455	2L_12601455_INS [dm3] 2L_12601455_INS [dm6]	A	AA	2.514e^-5	0.816	INTRON nub
2L	9640777	2L_9640777_SNP [dm3] 2L_9640777_SNP [dm6]	A	C	2.519e^-5	0.816	INTRON Apoltp
X	4730572	X_4730572_SNP [dm3] X_4836539_SNP [dm6]	T	A	2.592e^-5	0.816	INTERGENIC
2R	16437052	2R_16437052_SNP [dm3] 2R_20549547_SNP [dm6]	G	A	2.696e^-5	0.816	SYNONYMOUS_CODING Cpr57A UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	17004153	2L_17004153_SNP [dm3] 2L_17004153_SNP [dm6]	G	A	2.725e^-5	0.816	INTERGENIC
3L	12837138	3L_12837138_SNP [dm3] 3L_12844038_SNP [dm6]	C	A	2.768e^-5	0.816	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	17980099	2L_17980099_SNP [dm3] 2L_17980099_SNP [dm6]	A	T	2.800e^-5	0.816	SYNONYMOUS_CODING btv
3L	12836994	3L_12836994_SNP [dm3] 3L_12843894_SNP [dm6]	A	T	2.836e^-5	0.816	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2R	13426813	2R_13426813_SNP [dm3] 2R_17539308_SNP [dm6]	A	G	2.837e^-5	0.816	UPSTREAM CG43370 DOWNSTREAM eIF3-S9 INTERGENIC	TF binding site mE1_TFBS_cad
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.845e^-5	0.816	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	12837074	3L_12837074_INS [dm3] 3L_12843974_INS [dm6]	T	AATGTA	2.887e^-5	0.816	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	12630966	3L_12630966_SNP [dm3] 3L_12637866_SNP [dm6]	C	T	2.901e^-5	0.816	INTRON CR32111
3L	10972275	3L_10972275_SNP [dm3] 3L_10979175_SNP [dm6]	G	C	2.933e^-5	0.816	UPSTREAM CR45745 INTERGENIC
2L	13139175	2L_13139175_SNP [dm3] 2L_13139175_SNP [dm6]	T	C	2.960e^-5	0.816	INTERGENIC
X	21458939	X_21458939_SNP [dm3] X_21587912_SNP [dm6]	T	A	3.034e^-5	0.823	INTERGENIC
3L	16280330	3L_16280330_INS [dm3] 3L_16287230_INS [dm6]	T	TTCT	3.274e^-5	0.823	DOWNSTREAM CG13046 INTERGENIC
2L	4414478	2L_4414478_SNP [dm3] 2L_4414478_SNP [dm6]	C	T	3.284e^-5	0.823	INTRON CG15431
3R	16035732	3R_16035732_SNP [dm3] 3R_20210010_SNP [dm6]	A	C	3.289e^-5	0.823	UPSTREAM CG17199 INTRON Nlg4
2L	5572833	2L_5572833_SNP [dm3] 2L_5572833_SNP [dm6]	C	A	3.313e^-5	0.823	INTERGENIC
3L	20571200	3L_20571200_SNP [dm3] 3L_20578100_SNP [dm6]	C	A	3.328e^-5	0.823	INTERGENIC
3R	23856487	3R_23856487_SNP [dm3] 3R_28030765_SNP [dm6]	C	T	3.397e^-5	0.823	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23856601	3R_23856601_SNP [dm3] 3R_28030879_SNP [dm6]	G	A	3.466e^-5	0.823	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4402695	2L_4402695_SNP [dm3] 2L_4402695_SNP [dm6]	C	T	3.493e^-5	0.823	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad
3R	16034172	3R_16034172_SNP [dm3] 3R_20208450_SNP [dm6]	G	A	3.503e^-5	0.823	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	3.554e^-5	0.823	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1342879	2R_1342879_SNP [dm3] 2R_5455374_SNP [dm6]	A	G	3.591e^-5	0.823	UTR_3_PRIME laccase2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4403220	2L_4403220_SNP [dm3] 2L_4403220_SNP [dm6]	T	A	3.623e^-5	0.823	UPSTREAM Dim1 DOWNSTREAM CG15431 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	12519384	3L_12519384_SNP [dm3] 3L_12526284_SNP [dm6]	G	A	3.751e^-5	0.823	SYNONYMOUS_CODING eIF-2beta DOWNSTREAM nst	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16437058	2R_16437058_SNP [dm3] 2R_20549553_SNP [dm6]	T	A	3.775e^-5	0.823	SYNONYMOUS_CODING Cpr57A UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	17006842	3R_17006842_SNP [dm3] 3R_21181120_SNP [dm6]	A	T	3.787e^-5	0.823	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2738232	2L_2738232_SNP [dm3] 2L_2738232_SNP [dm6]	A	G	3.804e^-5	0.823	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23898703	3L_23898703_SNP [dm3] 3L_23905603_SNP [dm6]	G	A	3.847e^-5	0.823	INTRON CG40470
2L	18639967	2L_18639967_SNP [dm3] 2L_18639967_SNP [dm6]	T	A	3.849e^-5	0.823	INTRON MESR3
2R	16437440	2R_16437440_SNP [dm3] 2R_20549935_SNP [dm6]	C	A	3.864e^-5	0.823	SYNONYMOUS_CODING Cpr57A START_GAINED Obp57d UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7648546	3R_7648546_INS [dm3] 3R_11822824_INS [dm6]	G	GCTTACA	3.920e^-5	0.826	UTR_3_PRIME CG6959 UPSTREAM CG6950
3L	15265709	3L_15265709_INS [dm3] 3L_15272609_INS [dm6]	C	CC	4.125e^-5	0.851	INTERGENIC
3R	23055686	3R_23055686_SNP [dm3] 3R_27229964_SNP [dm6]	G	A	4.130e^-5	0.851	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7138066	2L_7138066_SNP [dm3] 2L_7138066_SNP [dm6]	G	A	4.218e^-5	0.855	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6935823	2L_6935823_SNP [dm3] 2L_6935823_SNP [dm6]	C	T	4.359e^-5	0.855	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17980024	2L_17980024_SNP [dm3] 2L_17980024_SNP [dm6]	T	C	4.408e^-5	0.855	SYNONYMOUS_CODING btv
2L	6573085	2L_6573085_SNP [dm3] 2L_6573085_SNP [dm6]	A	G	4.471e^-5	0.855	INTRON CG11319
2L	2390909	2L_2390909_SNP [dm3] 2L_2390909_SNP [dm6]	A	C	4.490e^-5	0.855	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	20221129	X_20221129_SNP [dm3] X_20350102_SNP [dm6]	C	A	4.556e^-5	0.855	INTERGENIC
2R	1342845	2R_1342845_SNP [dm3] 2R_5455340_SNP [dm6]	C	A	4.570e^-5	0.855	UTR_3_PRIME laccase2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21388977	3R_21388977_SNP [dm3] 3R_25563255_SNP [dm6]	C	T	4.663e^-5	0.855	INTRON msi
X	21458759	X_21458759_DEL [dm3] X_21587732_DEL [dm6]	TTTATAAGGTTTA...	C	4.794e^-5	0.855	INTERGENIC
3R	22769096	3R_22769096_SNP [dm3] 3R_26943374_SNP [dm6]	G	T	4.865e^-5	0.855	INTRON sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2390848	2L_2390848_SNP [dm3] 2L_2390848_SNP [dm6]	A	T	4.899e^-5	0.855	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	5064467	2L_5064467_SNP [dm3] 2L_5064467_SNP [dm6]	G	T	4.914e^-5	0.855	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9346035	2L_9346035_SNP [dm3] 2L_9346035_SNP [dm6]	C	T	5.031e^-5	0.855	INTERGENIC
3R	499699	3R_499699_SNP [dm3] 3R_4673977_SNP [dm6]	A	T	5.051e^-5	0.855	INTRON CG43427 EXON CR44157
2L	7088003	2L_7088003_SNP [dm3] 2L_7088003_SNP [dm6]	G	T	5.090e^-5	0.855	INTERGENIC
2L	2390880	2L_2390880_SNP [dm3] 2L_2390880_SNP [dm6]	C	G	5.099e^-5	0.855	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4375192	2L_4375192_SNP [dm3] 2L_4375192_SNP [dm6]	G	A	5.164e^-5	0.855	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2390833	2L_2390833_SNP [dm3] 2L_2390833_SNP [dm6]	C	T	5.219e^-5	0.855	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2390850	2L_2390850_SNP [dm3] 2L_2390850_SNP [dm6]	C	T	5.219e^-5	0.855	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	6179940	2L_6179940_SNP [dm3] 2L_6179940_SNP [dm6]	C	T	5.243e^-5	0.855	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17976994	2L_17976994_SNP [dm3] 2L_17976994_SNP [dm6]	T	G	5.251e^-5	0.855	NON_SYNONYMOUS_CODING btv
2L	5796463	2L_5796463_SNP [dm3] 2L_5796463_SNP [dm6]	C	T	5.274e^-5	0.855	INTRON CG9171
2L	5903746	2L_5903746_SNP [dm3] 2L_5903746_SNP [dm6]	G	A	5.305e^-5	0.855	SYNONYMOUS_CODING CG9021	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4927280	3R_4927280_SNP [dm3] 3R_9101558_SNP [dm6]	C	T	5.419e^-5	0.855	INTRON pum
3R	19916814	3R_19916814_SNP [dm3] 3R_24091092_SNP [dm6]	G	A	5.452e^-5	0.855	INTRON 4EHP
3L	5868744	3L_5868744_DEL [dm3] 3L_5875644_DEL [dm6]	CC	C	5.474e^-5	0.855	DOWNSTREAM CG18586 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19878827	2R_19878827_SNP [dm3] 2R_23991304_SNP [dm6]	C	T	5.489e^-5	0.855	SYNONYMOUS_CODING Pask DOWNSTREAM CG3860
3R	22769091	3R_22769091_DEL [dm3] 3R_26943369_DEL [dm6]	AA	A	5.493e^-5	0.855	INTRON sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2390898	2L_2390898_SNP [dm3] 2L_2390898_SNP [dm6]	A	T	5.503e^-5	0.855	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	1458319	3L_1458319_SNP [dm3] 3L_1458319_SNP [dm6]	G	T	5.517e^-5	0.855	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20221103	X_20221103_SNP [dm3] X_20350076_SNP [dm6]	T	A	5.659e^-5	0.86	INTERGENIC
3L	12837043	3L_12837043_SNP [dm3] 3L_12843943_SNP [dm6]	C	G	5.736e^-5	0.86	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	12549583	2L_12549583_SNP [dm3] 2L_12549583_SNP [dm6]	C	A	5.762e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5425504	2L_5425504_SNP [dm3] 2L_5425504_SNP [dm6]	A	G	5.773e^-5	0.86	INTERGENIC
2R	15692293	2R_15692293_SNP [dm3] 2R_19804788_SNP [dm6]	G	A	5.818e^-5	0.86	INTERGENIC
2L	2738000	2L_2738000_SNP [dm3] 2L_2738000_SNP [dm6]	T	C	5.840e^-5	0.86	DOWNSTREAM mir-4914 INTRON CG31689
3R	21388965	3R_21388965_SNP [dm3] 3R_25563243_SNP [dm6]	T	A	5.871e^-5	0.86	INTRON msi
3L	12836907	3L_12836907_SNP [dm3] 3L_12843807_SNP [dm6]	T	C	5.941e^-5	0.864	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	3753356	2L_3753356_SNP [dm3] 2L_3753356_SNP [dm6]	G	A	6.064e^-5	0.864	UTR_3_PRIME CG10019
3L	8365383	3L_8365383_SNP [dm3] 3L_8372283_SNP [dm6]	C	T	6.094e^-5	0.864	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4611835	3R_4611835_SNP [dm3] 3R_8786113_SNP [dm6]	G	A	6.107e^-5	0.864	INTRON Pif1B & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2443302	3L_2443302_DEL [dm3] 3L_2443302_DEL [dm6]	GTTG	G	6.127e^-5	0.864	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17979751	2L_17979751_SNP [dm3] 2L_17979751_SNP [dm6]	C	T	6.226e^-5	0.87	NON_SYNONYMOUS_CODING btv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9744012	3R_9744012_SNP [dm3] 3R_13918290_SNP [dm6]	T	C	6.267e^-5	0.87	INTERGENIC
2L	3373880	2L_3373880_SNP [dm3] 2L_3373880_SNP [dm6]	G	A	6.383e^-5	0.87	SYNONYMOUS_CODING CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1342866	2R_1342866_SNP [dm3] 2R_5455361_SNP [dm6]	A	G	6.385e^-5	0.87	UTR_3_PRIME laccase2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25249904	3R_25249904_SNP [dm3] 3R_29424182_SNP [dm6]	A	G	6.419e^-5	0.87	INTRON Ptp99A
3R	21388966	3R_21388966_SNP [dm3] 3R_25563244_SNP [dm6]	T	A	6.449e^-5	0.87	INTRON msi
3L	10282833	3L_10282833_SNP [dm3] 3L_10289733_SNP [dm6]	C	G	6.539e^-5	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5218712	3R_5218712_INS [dm3] 3R_9392990_INS [dm6]	A	ACATA	6.567e^-5	0.874	INTRON FER	TF binding site BDTNP1_TFBS_twi
X	21458405	X_21458405_DEL [dm3] X_21587378_DEL [dm6]	ATGTA	A	6.764e^-5	0.89	INTERGENIC
2L	2684915	2L_2684915_SNP [dm3] 2L_2684915_SNP [dm6]	C	G	6.806e^-5	0.89	INTRON CG31690
3L	17815597	3L_17815597_SNP [dm3] 3L_17822497_SNP [dm6]	T	A	6.835e^-5	0.89	UPSTREAM Grd INTRON Ir75c
2L	2390906	2L_2390906_SNP [dm3] 2L_2390906_SNP [dm6]	T	G	6.890e^-5	0.891	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	11236602	3L_11236602_SNP [dm3] 3L_11243502_SNP [dm6]	A	C	7.010e^-5	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23856535	3R_23856535_SNP [dm3] 3R_28030813_SNP [dm6]	G	A	7.012e^-5	0.895	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21388960	3R_21388960_SNP [dm3] 3R_25563238_SNP [dm6]	C	T	7.077e^-5	0.897	INTRON msi
3L	9780660	3L_9780660_SNP [dm3] 3L_9787560_SNP [dm6]	G	A	7.186e^-5	0.905	DOWNSTREAM Zasp67 INTERGENIC	TF binding site mE1_TFBS_inv
3L	23881093	3L_23881093_SNP [dm3] 3L_23887993_SNP [dm6]	G	C	7.267e^-5	0.909	INTRON CG40470
X	18394766	X_18394766_SNP [dm3] X_18500733_SNP [dm6]	G	C	7.315e^-5	0.909	NON_SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	2865070	X_2865070_INS [dm3] X_2971037_INS [dm6]	C	CC	7.380e^-5	0.911	INTRON kirre & 1 other
2L	13139281	2L_13139281_SNP [dm3] 2L_13139281_SNP [dm6]	G	A	7.643e^-5	0.936	INTERGENIC
2L	7088362	2L_7088362_INS [dm3] 2L_7088362_INS [dm6]	A	AATTCA	7.819e^-5	0.936	INTERGENIC
2R	15381468	2R_15381468_SNP [dm3] 2R_19493963_SNP [dm6]	T	A	7.843e^-5	0.936	UTR_3_PRIME Rep DOWNSTREAM hpo
2L	4371850	2L_4371850_SNP [dm3] 2L_4371850_SNP [dm6]	A	C	7.864e^-5	0.936	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	2738390	2L_2738390_SNP [dm3] 2L_2738390_SNP [dm6]	G	A	7.883e^-5	0.936	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2390810	2L_2390810_SNP [dm3] 2L_2390810_SNP [dm6]	G	A	7.946e^-5	0.936	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	20223437	X_20223437_SNP [dm3] X_20352410_SNP [dm6]	T	G	8.014e^-5	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19178467	3L_19178467_SNP [dm3] 3L_19185367_SNP [dm6]	A	G	8.034e^-5	0.936	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	7131808	X_7131808_SNP [dm3] X_7237775_SNP [dm6]	G	A	8.065e^-5	0.936	SYNONYMOUS_CODING CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15306552	2L_15306552_SNP [dm3] 2L_15306552_SNP [dm6]	C	A	8.088e^-5	0.936	INTERGENIC
2L	5572832	2L_5572832_SNP [dm3] 2L_5572832_SNP [dm6]	G	C	8.214e^-5	0.94	INTERGENIC
2L	9544893	2L_9544893_SNP [dm3] 2L_9544893_SNP [dm6]	A	T	8.319e^-5	0.94	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2R	19876610	2R_19876610_SNP [dm3] 2R_23989087_SNP [dm6]	G	T	8.368e^-5	0.94	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	19887853	2R_19887853_SNP [dm3] 2R_24000330_SNP [dm6]	G	C	8.413e^-5	0.94	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19887870	2R_19887870_SNP [dm3] 2R_24000347_SNP [dm6]	G	A	8.413e^-5	0.94	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22173209	3R_22173209_SNP [dm3] 3R_26347487_SNP [dm6]	C	G	8.437e^-5	0.94	INTRON CG33970
2L	5797418	2L_5797418_SNP [dm3] 2L_5797418_SNP [dm6]	T	A	8.488e^-5	0.94	INTRON CG9171
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	8.632e^-5	0.94	INTERGENIC
3R	17621214	3R_17621214_SNP [dm3] 3R_21795492_SNP [dm6]	C	A	8.638e^-5	0.94	INTRON CASK	TF binding site BDTNP1_TFBS_twi
2L	2685316	2L_2685316_SNP [dm3] 2L_2685316_SNP [dm6]	A	C	8.764e^-5	0.94	INTRON CG31690
2L	5454424	2L_5454424_SNP [dm3] 2L_5454424_SNP [dm6]	A	G	8.765e^-5	0.94	INTERGENIC
2R	15380915	2R_15380915_SNP [dm3] 2R_19493410_SNP [dm6]	G	A	8.784e^-5	0.94	SYNONYMOUS_CODING Rep DOWNSTREAM hpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1130506	2R_1130506_SNP [dm3] 2R_5243001_SNP [dm6]	T	C	8.852e^-5	0.94	INTRON Nipped-A	TF binding site mE1_TFBS_HSA
2R	17382572	2R_17382572_SNP [dm3] 2R_21495067_SNP [dm6]	T	C	8.876e^-5	0.94	INTRON Fkbp14
3L	8047861	3L_8047861_SNP [dm3] 3L_8054761_SNP [dm6]	G	A	8.881e^-5	0.94	SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16610347	2L_16610347_SNP [dm3] 2L_16610347_SNP [dm6]	C	T	8.961e^-5	0.94	DOWNSTREAM CG4631 INTRON CG42389
3L	23880121	3L_23880121_SNP [dm3] 3L_23887021_SNP [dm6]	T	A	8.972e^-5	0.94	INTRON CG40470
3R	5144752	3R_5144752_SNP [dm3] 3R_9319030_SNP [dm6]	T	C	9.127e^-5	0.951	INTRON CG8861
2L	3673700	2L_3673700_SNP [dm3] 2L_3673700_SNP [dm6]	G	A	9.201e^-5	0.953	INTRON CG34340
3R	17109464	3R_17109464_SNP [dm3] 3R_21283742_SNP [dm6]	C	A	9.319e^-5	0.954	INTRON SIFaR & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23237512	3L_23237512_SNP [dm3] 3L_23244412_SNP [dm6]	G	A	9.356e^-5	0.954	INTRON nAChRalpha4
2L	4399961	2L_4399961_SNP [dm3] 2L_4399961_SNP [dm6]	C	T	9.389e^-5	0.954	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003
2L	15306551	2L_15306551_SNP [dm3] 2L_15306551_SNP [dm6]	T	A	9.466e^-5	0.954	INTERGENIC
3R	21180263	3R_21180263_SNP [dm3] 3R_25354541_SNP [dm6]	C	T	9.533e^-5	0.954	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	9346101	2L_9346101_SNP [dm3] 2L_9346101_SNP [dm6]	T	A	9.543e^-5	0.954	INTERGENIC
3L	23881066	3L_23881066_SNP [dm3] 3L_23887966_SNP [dm6]	A	T	9.564e^-5	0.954	INTRON CG40470
2R	8328238	2R_8328238_SNP [dm3] 2R_12440733_SNP [dm6]	T	C	9.904e^-5	0.966	UTR_3_PRIME CG30334 INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	15693674	3L_15693674_SNP [dm3] 3L_15700574_SNP [dm6]	C	T	9.964e^-5	0.966	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	839306	3L_839306_SNP [dm3] 3L_839306_SNP [dm6]	G	A	1.016e^-4	0.966	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
2L	9544826	2L_9544826_DEL [dm3] 2L_9544826_DEL [dm6]	TGGC	T	1.024e^-4	0.966	UTR_3_PRIME CG13113 UPSTREAM CG13114
X	7224127	X_7224127_SNP [dm3] X_7330094_SNP [dm6]	C	T	1.028e^-4	0.966	SYNONYMOUS_CODING CG18155 INTRON CR44357 & 1 other	TF binding site mE1_TFBS_sens
X	21458651	X_21458651_SNP [dm3] X_21587624_SNP [dm6]	C	A	1.041e^-4	0.966	INTERGENIC	transposable element FlyBase
3R	14254360	3R_14254360_SNP [dm3] 3R_18428638_SNP [dm6]	T	G	1.049e^-4	0.966	UTR_3_PRIME fru INTRON fru
3L	18346616	3L_18346616_SNP [dm3] 3L_18353516_SNP [dm6]	G	C	1.050e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20221788	X_20221788_SNP [dm3] X_20350761_SNP [dm6]	T	C	1.073e^-4	0.966	INTERGENIC
3R	6247051	3R_6247051_SNP [dm3] 3R_10421329_SNP [dm6]	A	G	1.081e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	1342668	2R_1342668_SNP [dm3] 2R_5455163_SNP [dm6]	C	G	1.084e^-4	0.966	UTR_3_PRIME laccase2 DOWNSTREAM laccase2
2R	8380112	2R_8380112_SNP [dm3] 2R_12492607_SNP [dm6]	C	A	1.098e^-4	0.966	INTRON fdl
2L	18785795	2L_18785795_SNP [dm3] 2L_18785795_SNP [dm6]	C	T	1.100e^-4	0.966	INTRON ham
X	6159600	X_6159600_DEL [dm3] X_6265567_DEL [dm6]	TTAGTT	T	1.101e^-4	0.966	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3386974	2L_3386974_SNP [dm3] 2L_3386974_SNP [dm6]	T	C	1.105e^-4	0.966	DOWNSTREAM Sfp23F & 1 other EXON CR45301
2L	1889386	2L_1889386_SNP [dm3] 2L_1889386_SNP [dm6]	A	G	1.108e^-4	0.966	INTRON CG7337
2L	9544815	2L_9544815_SNP [dm3] 2L_9544815_SNP [dm6]	A	T	1.111e^-4	0.966	UTR_3_PRIME CG13113 UPSTREAM CG13114
2L	18639885	2L_18639885_SNP [dm3] 2L_18639885_SNP [dm6]	G	C	1.124e^-4	0.966	INTRON MESR3
X	20220978	X_20220978_INS [dm3] X_20349951_INS [dm6]	A	AGCAGAA	1.141e^-4	0.966	INTERGENIC
2R	9086104	2R_9086104_SNP [dm3] 2R_13198599_SNP [dm6]	C	T	1.144e^-4	0.966	UPSTREAM Aats-val & 1 other INTERGENIC
3L	7446116	3L_7446116_SNP [dm3] 3L_7453016_SNP [dm6]	T	C	1.145e^-4	0.966	NON_SYNONYMOUS_CODING CG42458 DOWNSTREAM CG33278	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21458648	X_21458648_INS [dm3] X_21587621_INS [dm6]	A	ACATAGAGACA...	1.149e^-4	0.966	INTERGENIC	transposable element FlyBase
X	20220970	X_20220970_INS [dm3] X_20349943_INS [dm6]	A	ACCTCGACC	1.157e^-4	0.966	INTERGENIC	transposable element FlyBase
X	20220972	X_20220972_INS [dm3] X_20349945_INS [dm6]	A	ACTACTCGGTGC...	1.157e^-4	0.966	INTERGENIC
3R	21927665	3R_21927665_SNP [dm3] 3R_26101943_SNP [dm6]	G	T	1.161e^-4	0.966	INTERGENIC
2L	2863532	2L_2863532_SNP [dm3] 2L_2863532_SNP [dm6]	A	T	1.162e^-4	0.966	INTRON CG2991	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	8624504	2L_8624504_SNP [dm3] 2L_8624504_SNP [dm6]	T	C	1.164e^-4	0.966	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
2R	14120356	2R_14120356_SNP [dm3] 2R_18232851_SNP [dm6]	C	T	1.166e^-4	0.966	UTR_5_PRIME fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	12326203	3L_12326203_SNP [dm3] 3L_12333103_SNP [dm6]	A	G	1.180e^-4	0.966	INTRON CG32105	TF binding site mE1_TFBS_HSA
2L	4371246	2L_4371246_SNP [dm3] 2L_4371246_SNP [dm6]	T	G	1.182e^-4	0.966	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	4460152	2L_4460152_SNP [dm3] 2L_4460152_SNP [dm6]	A	C	1.184e^-4	0.966	UPSTREAM mRpL27 INTRON CG15435	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	5780103	2L_5780103_SNP [dm3] 2L_5780103_SNP [dm6]	C	G	1.192e^-4	0.966	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	5009284	X_5009284_SNP [dm3] X_5115251_SNP [dm6]	A	G	1.194e^-4	0.966	INTRON rg & 1 other
3L	13162244	3L_13162244_SNP [dm3] 3L_13169144_SNP [dm6]	T	A	1.200e^-4	0.966	INTERGENIC
3R	25529880	3R_25529880_SNP [dm3] 3R_29704158_SNP [dm6]	T	C	1.200e^-4	0.966	INTERGENIC
2L	2738328	2L_2738328_SNP [dm3] 2L_2738328_SNP [dm6]	C	T	1.201e^-4	0.966	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9759185	2R_9759185_SNP [dm3] 2R_13871680_SNP [dm6]	G	A	1.201e^-4	0.966	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	17815524	3L_17815524_INS [dm3] 3L_17822424_INS [dm6]	A	ATTTACAGAAA...	1.205e^-4	0.966	UPSTREAM Grd INTRON Ir75c
3L	2805669	3L_2805669_SNP [dm3] 3L_2805669_SNP [dm6]	C	T	1.218e^-4	0.966	INTRON CG43444
2L	1576888	2L_1576888_SNP [dm3] 2L_1576888_SNP [dm6]	T	G	1.223e^-4	0.966	INTRON haf
3R	17469903	3R_17469903_SNP [dm3] 3R_21644181_SNP [dm6]	A	T	1.224e^-4	0.966	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	1.227e^-4	0.966	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16361554	2L_16361554_SNP [dm3] 2L_16361554_SNP [dm6]	C	T	1.228e^-4	0.966	INTERGENIC
2L	9536377	2L_9536377_SNP [dm3] 2L_9536377_SNP [dm6]	C	T	1.232e^-4	0.966	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
2L	5789417	2L_5789417_SNP [dm3] 2L_5789417_SNP [dm6]	A	G	1.238e^-4	0.966	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6106420	2L_6106420_SNP [dm3] 2L_6106420_SNP [dm6]	A	T	1.249e^-4	0.966	INTRON stai
2L	17780234	2L_17780234_SNP [dm3] 2L_17780234_SNP [dm6]	A	T	1.251e^-4	0.966	INTERGENIC
3R	23856556	3R_23856556_SNP [dm3] 3R_28030834_SNP [dm6]	G	A	1.253e^-4	0.966	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3214624	X_3214624_SNP [dm3] X_3320591_SNP [dm6]	T	C	1.257e^-4	0.966	INTRON dnc & 1 other
2R	15779211	2R_15779211_SNP [dm3] 2R_19891706_SNP [dm6]	G	A	1.258e^-4	0.966	INTERGENIC
2R	14119912	2R_14119912_SNP [dm3] 2R_18232407_SNP [dm6]	T	A	1.262e^-4	0.966	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14119917	2R_14119917_SNP [dm3] 2R_18232412_SNP [dm6]	A	T	1.262e^-4	0.966	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11465122	2L_11465122_SNP [dm3] 2L_11465122_SNP [dm6]	T	C	1.264e^-4	0.966	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14120057	2R_14120057_SNP [dm3] 2R_18232552_SNP [dm6]	T	A	1.270e^-4	0.966	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	6198987	X_6198987_SNP [dm3] X_6304954_SNP [dm6]	G	T	1.272e^-4	0.966	INTRON CG3823	TF binding site mE1_TFBS_HSA
2R	3630339	2R_3630339_SNP [dm3] 2R_7742834_SNP [dm6]	G	A	1.272e^-4	0.966	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other
3L	3796047	3L_3796047_INS [dm3] 3L_3796047_INS [dm6]	T	GGGC	1.282e^-4	0.966	INTRON CG32264
2L	17004152	2L_17004152_SNP [dm3] 2L_17004152_SNP [dm6]	G	A	1.289e^-4	0.966	INTERGENIC
3L	6985039	3L_6985039_SNP [dm3] 3L_6991939_SNP [dm6]	G	T	1.303e^-4	0.966	INTRON bin
X	18814227	X_18814227_SNP [dm3] X_18920194_SNP [dm6]	T	C	1.314e^-4	0.966	INTERGENIC
2R	13648088	2R_13648088_SNP [dm3] 2R_17760583_SNP [dm6]	G	C	1.314e^-4	0.966	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	1.317e^-4	0.966	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8261123	2R_8261123_INS [dm3] 2R_12373618_INS [dm6]	T	TCAC	1.321e^-4	0.966	INTRON CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4371256	2L_4371256_SNP [dm3] 2L_4371256_SNP [dm6]	T	G	1.327e^-4	0.966	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	12837741	3L_12837741_SNP [dm3] 3L_12844641_SNP [dm6]	T	C	1.330e^-4	0.966	UTR_3_PRIME CG10948
2R	14634506	2R_14634506_SNP [dm3] 2R_18747001_SNP [dm6]	A	G	1.331e^-4	0.966	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
3R	16773119	3R_16773119_SNP [dm3] 3R_20947397_SNP [dm6]	T	G	1.339e^-4	0.966	INTERGENIC
2R	8380065	2R_8380065_INS [dm3] 2R_12492560_INS [dm6]	A	AT	1.346e^-4	0.966	INTRON fdl
3L	3796121	3L_3796121_SNP [dm3] 3L_3796121_SNP [dm6]	G	T	1.348e^-4	0.966	INTRON CG32264
2L	5955905	2L_5955905_SNP [dm3] 2L_5955905_SNP [dm6]	G	A	1.366e^-4	0.966	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
3L	7728698	3L_7728698_SNP [dm3] 3L_7735598_SNP [dm6]	T	A	1.374e^-4	0.966	INTRON CG32373 & 1 other
2R	8370727	2R_8370727_DEL [dm3] 2R_12483222_DEL [dm6]	AA	A	1.382e^-4	0.966	INTRON Dh44-R2
2L	7252412	2L_7252412_SNP [dm3] 2L_7252412_SNP [dm6]	C	T	1.386e^-4	0.966	SYNONYMOUS_CODING CG13786
2R	8380117	2R_8380117_SNP [dm3] 2R_12492612_SNP [dm6]	A	C	1.388e^-4	0.966	INTRON fdl
2L	6970539	2L_6970539_SNP [dm3] 2L_6970539_SNP [dm6]	C	A	1.404e^-4	0.966	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9544798	2L_9544798_DEL [dm3] 2L_9544798_DEL [dm6]	AATAAGTCACCTCA...	A	1.409e^-4	0.966	UTR_3_PRIME CG13113 UPSTREAM CG13114	TF binding site mE1_TFBS_cad
2L	12262137	2L_12262137_DEL [dm3] 2L_12262137_DEL [dm6]	TGT	T	1.409e^-4	0.966	INTRON aret
3L	23945762	3L_23945762_SNP [dm3] 3L_23952662_SNP [dm6]	G	A	1.411e^-4	0.966	INTRON CG40470
X	7532481	X_7532481_SNP [dm3] X_7638448_SNP [dm6]	A	C	1.413e^-4	0.966	INTRON ct
2R	19041423	2R_19041423_SNP [dm3] 2R_23153900_SNP [dm6]	T	G	1.417e^-4	0.966	UTR_5_PRIME CG9899 DOWNSTREAM CG43207
2L	20603455	2L_20603455_DEL [dm3] 2L_20603455_DEL [dm6]	ACTTCTTTAA	A	1.426e^-4	0.966	DOWNSTREAM CG31677 INTRON CR44909
X	19055737	X_19055737_SNP [dm3] X_19161704_SNP [dm6]	C	T	1.426e^-4	0.966	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
X	18254515	X_18254515_SNP [dm3] X_18360482_SNP [dm6]	C	T	1.426e^-4	0.966	INTRON CG6106	TF binding site mE1_TFBS_chinmo
2L	12600320	2L_12600320_SNP [dm3] 2L_12600320_SNP [dm6]	A	T	1.431e^-4	0.966	INTRON nub
2L	7363814	2L_7363814_INS [dm3] 2L_7363814_INS [dm6]	A	ATAGTTTATACTTGAA...	1.433e^-4	0.966	INTRON Wnt10
2L	5789717	2L_5789717_SNP [dm3] 2L_5789717_SNP [dm6]	C	T	1.444e^-4	0.966	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12982573	2L_12982573_INS [dm3] 2L_12982573_INS [dm6]	A	ATATCCCGA	1.450e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17374998	X_17374998_SNP [dm3] X_17480965_SNP [dm6]	C	T	1.457e^-4	0.966	INTRON CG43658
2L	5425491	2L_5425491_SNP [dm3] 2L_5425491_SNP [dm6]	G	T	1.459e^-4	0.966	INTERGENIC
2L	6935853	2L_6935853_SNP [dm3] 2L_6935853_SNP [dm6]	T	C	1.464e^-4	0.966	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2736573	2L_2736573_SNP [dm3] 2L_2736573_SNP [dm6]	C	G	1.469e^-4	0.966	UPSTREAM mir-4914 INTRON CG31689
3R	8901524	3R_8901524_SNP [dm3] 3R_13075802_SNP [dm6]	A	T	1.471e^-4	0.966	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	13487080	X_13487080_SNP [dm3] X_13593047_SNP [dm6]	C	T	1.477e^-4	0.966	UTR_3_PRIME Tango13 DOWNSTREAM up
2L	10435540	2L_10435540_SNP [dm3] 2L_10435540_SNP [dm6]	T	C	1.484e^-4	0.966	UTR_5_PRIME CG5337 UPSTREAM holn1
2L	4415181	2L_4415181_SNP [dm3] 2L_4415181_SNP [dm6]	G	T	1.492e^-4	0.966	INTRON CG15431
2L	11469356	2L_11469356_SNP [dm3] 2L_11469356_SNP [dm6]	C	T	1.504e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9640713	2L_9640713_SNP [dm3] 2L_9640713_SNP [dm6]	G	A	1.509e^-4	0.966	INTRON Apoltp
3R	22706164	3R_22706164_SNP [dm3] 3R_26880442_SNP [dm6]	A	C	1.509e^-4	0.966	UTR_3_PRIME CG5500 INTRON ro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8286438	3L_8286438_SNP [dm3] 3L_8293338_SNP [dm6]	C	T	1.511e^-4	0.966	INTRON CG7201
3L	15265655	3L_15265655_SNP [dm3] 3L_15272555_SNP [dm6]	C	A	1.521e^-4	0.966	INTERGENIC
2L	11341474	2L_11341474_SNP [dm3] 2L_11341474_SNP [dm6]	C	T	1.522e^-4	0.966	DOWNSTREAM CG14926 INTERGENIC
X	21458652	X_21458652_SNP [dm3] X_21587625_SNP [dm6]	T	G	1.523e^-4	0.966	INTERGENIC	transposable element FlyBase
3R	16992054	3R_16992054_SNP [dm3] 3R_21166332_SNP [dm6]	C	G	1.546e^-4	0.966	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
3L	3796116	3L_3796116_SNP [dm3] 3L_3796116_SNP [dm6]	G	A	1.548e^-4	0.966	INTRON CG32264
3R	25109466	3R_25109466_SNP [dm3] 3R_29283744_SNP [dm6]	C	G	1.576e^-4	0.966	INTERGENIC	regulatory region REDfly_CRMs
2R	16435552	2R_16435552_SNP [dm3] 2R_20548047_SNP [dm6]	T	A	1.576e^-4	0.966	SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
3L	15693658	3L_15693658_SNP [dm3] 3L_15700558_SNP [dm6]	T	A	1.579e^-4	0.966	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	23856568	3R_23856568_SNP [dm3] 3R_28030846_SNP [dm6]	T	G	1.587e^-4	0.966	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4971511	3L_4971511_SNP [dm3] 3L_4971511_SNP [dm6]	T	G	1.588e^-4	0.966	INTRON Con
2R	13426832	2R_13426832_SNP [dm3] 2R_17539327_SNP [dm6]	A	C	1.592e^-4	0.966	NON_SYNONYMOUS_CODING CG43370 DOWNSTREAM eIF3-S9	TF binding site mE1_TFBS_cad
2L	19516378	2L_19516378_SNP [dm3] 2L_19516378_SNP [dm6]	A	T	1.592e^-4	0.966	INTRON CG10186	TF binding site mE1_TFBS_chinmo
3R	15517509	3R_15517509_SNP [dm3] 3R_19691787_SNP [dm6]	A	G	1.596e^-4	0.966	INTRON Naam
3L	10282688	3L_10282688_SNP [dm3] 3L_10289588_SNP [dm6]	A	G	1.597e^-4	0.966	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17906967	2L_17906967_SNP [dm3] 2L_17906967_SNP [dm6]	T	A	1.597e^-4	0.966	INTERGENIC
2R	8380078	2R_8380078_SNP [dm3] 2R_12492573_SNP [dm6]	T	C	1.602e^-4	0.966	INTRON fdl
2L	12386656	2L_12386656_SNP [dm3] 2L_12386656_SNP [dm6]	C	G	1.602e^-4	0.966	INTRON bru-2
2R	14994122	2R_14994122_SNP [dm3] 2R_19106617_SNP [dm6]	A	C	1.607e^-4	0.966	INTRON 5-HT1A
2R	8380089	2R_8380089_SNP [dm3] 2R_12492584_SNP [dm6]	T	C	1.618e^-4	0.966	INTRON fdl
X	10628293	X_10628293_SNP [dm3] X_10734260_SNP [dm6]	G	C	1.621e^-4	0.966	INTRON CG32676
2R	18286530	2R_18286530_SNP [dm3] 2R_22399025_SNP [dm6]	A	G	1.623e^-4	0.966	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	18370058	2L_18370058_SNP [dm3] 2L_18370058_SNP [dm6]	A	G	1.623e^-4	0.966	INTRON Fas3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18111828	2L_18111828_SNP [dm3] 2L_18111828_SNP [dm6]	G	T	1.626e^-4	0.966	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17781752	2L_17781752_SNP [dm3] 2L_17781752_SNP [dm6]	T	A	1.639e^-4	0.966	INTERGENIC
3R	21180314	3R_21180314_SNP [dm3] 3R_25354592_SNP [dm6]	A	G	1.640e^-4	0.966	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	18381894	X_18381894_SNP [dm3] X_18487861_SNP [dm6]	G	A	1.641e^-4	0.966	SYNONYMOUS_CODING CG15046 UPSTREAM psh	TF binding site mE1_TFBS_chinmo
X	20221063	X_20221063_SNP [dm3] X_20350036_SNP [dm6]	T	G	1.646e^-4	0.966	INTERGENIC
X	20221138	X_20221138_SNP [dm3] X_20350111_SNP [dm6]	T	C	1.646e^-4	0.966	INTERGENIC
3R	16780291	3R_16780291_SNP [dm3] 3R_20954569_SNP [dm6]	C	G	1.647e^-4	0.966	INTRON Atpalpha
2L	4371304	2L_4371304_SNP [dm3] 2L_4371304_SNP [dm6]	C	G	1.656e^-4	0.966	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	917525	3L_917525_SNP [dm3] 3L_917525_SNP [dm6]	A	T	1.659e^-4	0.966	INTRON Glut1
2L	1561479	2L_1561479_SNP [dm3] 2L_1561479_SNP [dm6]	G	A	1.679e^-4	0.966	INTRON haf
2L	5449419	2L_5449419_SNP [dm3] 2L_5449419_SNP [dm6]	T	C	1.689e^-4	0.966	INTERGENIC
X	4335641	X_4335641_SNP [dm3] X_4441608_SNP [dm6]	T	A	1.691e^-4	0.966	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	13162251	3L_13162251_INS [dm3] 3L_13169151_INS [dm6]	T	TGTGGTTTGTTTTCCC...	1.696e^-4	0.966	INTERGENIC
2R	3623358	2R_3623358_SNP [dm3] 2R_7735853_SNP [dm6]	G	A	1.703e^-4	0.966	UPSTREAM CG18812 INTERGENIC
3L	2726083	3L_2726083_SNP [dm3] 3L_2726083_SNP [dm6]	G	T	1.704e^-4	0.966	INTRON Mrtf
2L	16955833	2L_16955833_SNP [dm3] 2L_16955833_SNP [dm6]	T	G	1.709e^-4	0.966	INTERGENIC
2L	4415317	2L_4415317_SNP [dm3] 2L_4415317_SNP [dm6]	T	C	1.716e^-4	0.966	INTRON CG15431
2L	6226953	2L_6226953_INS [dm3] 2L_6226953_INS [dm6]	A	AA	1.716e^-4	0.966	DOWNSTREAM Ugt37b1 INTERGENIC
2L	18640053	2L_18640053_SNP [dm3] 2L_18640053_SNP [dm6]	C	T	1.725e^-4	0.966	INTRON MESR3
X	13955851	X_13955851_INS [dm3] X_14061818_INS [dm6]	G	GGCTG	1.726e^-4	0.966	UPSTREAM Ste:CG33236 INTERGENIC
3R	4927311	3R_4927311_SNP [dm3] 3R_9101589_SNP [dm6]	C	T	1.730e^-4	0.966	INTRON pum
3L	910098	3L_910098_SNP [dm3] 3L_910098_SNP [dm6]	G	T	1.736e^-4	0.966	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	2736548	2L_2736548_SNP [dm3] 2L_2736548_SNP [dm6]	A	G	1.738e^-4	0.966	INTRON CG31689
3R	16143470	3R_16143470_DEL [dm3] 3R_20317748_DEL [dm6]	AAC	A	1.747e^-4	0.966	UPSTREAM CG42668 INTRON CG42668
2L	8625221	2L_8625221_SNP [dm3] 2L_8625221_SNP [dm6]	A	T	1.747e^-4	0.966	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
2L	5803956	2L_5803956_SNP [dm3] 2L_5803956_SNP [dm6]	A	T	1.752e^-4	0.966	UTR_3_PRIME CG7239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	1.754e^-4	0.966	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3402430	2L_3402430_SNP [dm3] 2L_3402430_SNP [dm6]	T	G	1.758e^-4	0.966	INTERGENIC
2L	5064447	2L_5064447_SNP [dm3] 2L_5064447_SNP [dm6]	C	T	1.759e^-4	0.966	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2736549	2L_2736549_SNP [dm3] 2L_2736549_SNP [dm6]	G	T	1.761e^-4	0.966	INTRON CG31689
3R	23265018	3R_23265018_SNP [dm3] 3R_27439296_SNP [dm6]	A	G	1.762e^-4	0.966	INTRON CG44290	TF binding site BDTNP1_TFBS_twi
2L	13429184	2L_13429184_SNP [dm3] 2L_13429184_SNP [dm6]	A	G	1.762e^-4	0.966	INTRON CG42784
2R	14579652	2R_14579652_SNP [dm3] 2R_18692147_SNP [dm6]	C	T	1.768e^-4	0.966	UTR_5_PRIME Sik3 INTRON Sik3
2R	14086294	2R_14086294_SNP [dm3] 2R_18198789_SNP [dm6]	G	A	1.771e^-4	0.966	INTERGENIC
2R	8368651	2R_8368651_SNP [dm3] 2R_12481146_SNP [dm6]	G	C	1.785e^-4	0.966	SYNONYMOUS_CODING Dh44-R2
2R	1596534	2R_1596534_SNP [dm3] 2R_5709029_SNP [dm6]	T	G	1.790e^-4	0.966	SYNONYMOUS_CODING ap	TF binding site mE1_TFBS_cad
2R	14086291	2R_14086291_SNP [dm3] 2R_18198786_SNP [dm6]	A	G	1.801e^-4	0.966	INTERGENIC
3L	2242110	3L_2242110_SNP [dm3] 3L_2242110_SNP [dm6]	G	T	1.801e^-4	0.966	NON_SYNONYMOUS_CODING ACXD UTR_3_PRIME ACXD
2L	2390555	2L_2390555_SNP [dm3] 2L_2390555_SNP [dm6]	C	G	1.806e^-4	0.966	SYNONYMOUS_CODING CG43750
2L	6964815	2L_6964815_SNP [dm3] 2L_6964815_SNP [dm6]	G	A	1.810e^-4	0.966	SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13973622	2L_13973622_SNP [dm3] 2L_13973622_SNP [dm6]	C	T	1.817e^-4	0.966	UTR_3_PRIME NimC1 UPSTREAM He DOWNSTREAM NimC1
3R	22751284	3R_22751284_SNP [dm3] 3R_26925562_SNP [dm6]	C	A	1.820e^-4	0.966	INTRON sda
2L	19793831	2L_19793831_SNP [dm3] 2L_19793831_SNP [dm6]	T	C	1.835e^-4	0.966	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
3R	8901716	3R_8901716_INS [dm3] 3R_13075994_INS [dm6]	T	TT	1.836e^-4	0.966	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19139122	2L_19139122_SNP [dm3] 2L_19139122_SNP [dm6]	C	G	1.839e^-4	0.966	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2L	17906969	2L_17906969_DEL [dm3] 2L_17906969_DEL [dm6]	TCATAATTTCTTCTTCT...	T	1.848e^-4	0.966	INTERGENIC
2L	2025935	2L_2025935_SNP [dm3] 2L_2025935_SNP [dm6]	A	C	1.859e^-4	0.966	INTRON CG4238
2L	4371314	2L_4371314_SNP [dm3] 2L_4371314_SNP [dm6]	A	C	1.868e^-4	0.966	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	12541399	3R_12541399_SNP [dm3] 3R_16715677_SNP [dm6]	C	T	1.874e^-4	0.966	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16751963	2L_16751963_DEL [dm3] 2L_16751963_DEL [dm6]	TT	T	1.888e^-4	0.966	UTR_3_PRIME CG17912
2R	8335019	2R_8335019_SNP [dm3] 2R_12447514_SNP [dm6]	A	T	1.888e^-4	0.966	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3R	4156471	3R_4156471_SNP [dm3] 3R_8330749_SNP [dm6]	T	C	1.889e^-4	0.966	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16706247	3L_16706247_SNP [dm3] 3L_16713147_SNP [dm6]	A	T	1.905e^-4	0.966	UPSTREAM Dab INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	18368858	2L_18368858_SNP [dm3] 2L_18368858_SNP [dm6]	T	A	1.906e^-4	0.966	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13221361	2L_13221361_SNP [dm3] 2L_13221361_SNP [dm6]	C	T	1.910e^-4	0.966	UTR_3_PRIME CG5705 DOWNSTREAM Ski6	TF binding site BDTNP1_TFBS_Med
2L	18576240	2L_18576240_SNP [dm3] 2L_18576240_SNP [dm6]	T	A	1.912e^-4	0.966	INTRON Pde11
3L	17815024	3L_17815024_SNP [dm3] 3L_17821924_SNP [dm6]	G	A	1.914e^-4	0.966	SYNONYMOUS_CODING Ir75c
2L	14777078	2L_14777078_SNP [dm3] 2L_14777078_SNP [dm6]	G	T	1.921e^-4	0.966	INTERGENIC
X	12664680	X_12664680_SNP [dm3] X_12770647_SNP [dm6]	A	G	1.926e^-4	0.966	UTR_3_PRIME CG3812	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3761314	X_3761314_SNP [dm3] X_3867281_SNP [dm6]	G	A	1.930e^-4	0.966	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
2R	9086105	2R_9086105_SNP [dm3] 2R_13198600_SNP [dm6]	G	A	1.932e^-4	0.966	UPSTREAM Aats-val & 1 other INTERGENIC
2L	19516594	2L_19516594_SNP [dm3] 2L_19516594_SNP [dm6]	T	C	1.937e^-4	0.966	UTR_5_PRIME CG10186	TF binding site mE1_TFBS_chinmo
X	20146257	X_20146257_INS [dm3] X_20275231_INS [dm6]	A	ACGTAAAC	1.940e^-4	0.966	INTERGENIC
2R	11443520	2R_11443520_SNP [dm3] 2R_15556015_SNP [dm6]	G	A	1.941e^-4	0.966	SPLICE_SITE_DONOR CG12963 UPSTREAM CG12963 INTRON CG12963
2R	1134703	2R_1134703_SNP [dm3] 2R_5247198_SNP [dm6]	C	T	1.942e^-4	0.966	INTRON Nipped-A	transposable element FlyBase
2L	17979955	2L_17979955_SNP [dm3] 2L_17979955_SNP [dm6]	T	C	1.944e^-4	0.966	SYNONYMOUS_CODING btv
X	16477887	X_16477887_SNP [dm3] X_16583854_SNP [dm6]	T	A	1.948e^-4	0.966	INTRON CanA-14F
3L	12698960	3L_12698960_SNP [dm3] 3L_12705860_SNP [dm6]	C	T	1.950e^-4	0.966	INTRON mirr	TF binding site BDTNP1_TFBS_da
3L	7302555	3L_7302555_SNP [dm3] 3L_7309455_SNP [dm6]	A	G	1.952e^-4	0.966	INTRON unc-13-4A
2R	16983344	2R_16983344_SNP [dm3] 2R_21095839_SNP [dm6]	A	T	1.957e^-4	0.966	DOWNSTREAM CG4038 INTRON CG34396
2R	3623356	2R_3623356_SNP [dm3] 2R_7735851_SNP [dm6]	C	T	1.957e^-4	0.966	UPSTREAM CG18812 INTERGENIC
3R	7963046	3R_7963046_SNP [dm3] 3R_12137324_SNP [dm6]	C	A	1.965e^-4	0.967	INTERGENIC
X	10621844	X_10621844_SNP [dm3] X_10727811_SNP [dm6]	G	C	1.970e^-4	0.967	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
X	4730473	X_4730473_SNP [dm3] X_4836440_SNP [dm6]	C	T	1.976e^-4	0.967	INTERGENIC
2L	14071115	2L_14071115_SNP [dm3] 2L_14071115_SNP [dm6]	A	G	1.981e^-4	0.967	INTRON nAChRalpha5
2L	2738800	2L_2738800_SNP [dm3] 2L_2738800_SNP [dm6]	G	T	1.987e^-4	0.967	INTRON CG31689
2L	2329039	2L_2329039_SNP [dm3] 2L_2329039_SNP [dm6]	T	A	1.990e^-4	0.967	INTRON CG9967 & 1 other
2R	7910158	2R_7910158_SNP [dm3] 2R_12022653_SNP [dm6]	G	C	1.998e^-4	0.968	DOWNSTREAM CG8964 INTERGENIC
X	16848545	X_16848545_DEL [dm3] X_16954512_DEL [dm6]	AAAA	A	2.007e^-4	0.97	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3533304	3L_3533304_SNP [dm3] 3L_3533304_SNP [dm6]	C	T	2.031e^-4	0.971	INTRON Eip63E
2L	2593347	2L_2593347_SNP [dm3] 2L_2593347_SNP [dm6]	T	G	2.042e^-4	0.971	DOWNSTREAM CG15394 INTERGENIC
3R	14350130	3R_14350130_SNP [dm3] 3R_18524408_SNP [dm6]	A	G	2.044e^-4	0.971	INTRON fru
X	9224651	X_9224651_INS [dm3] X_9330618_INS [dm6]	C	CATTCCTCAATTAC...	2.047e^-4	0.971	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2R	16983240	2R_16983240_SNP [dm3] 2R_21095735_SNP [dm6]	C	A	2.049e^-4	0.971	DOWNSTREAM CG4038 INTRON CG34396
X	18460067	X_18460067_SNP [dm3] X_18566034_SNP [dm6]	C	T	2.065e^-4	0.971	UPSTREAM Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	12837093	3L_12837093_SNP [dm3] 3L_12843993_SNP [dm6]	A	T	2.071e^-4	0.971	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	12837095	3L_12837095_INS [dm3] 3L_12843995_INS [dm6]	T	TAATGTT	2.071e^-4	0.971	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
X	21458518	X_21458518_SNP [dm3] X_21587491_SNP [dm6]	T	G	2.088e^-4	0.971	INTERGENIC	transposable element FlyBase
2L	13269279	2L_13269279_SNP [dm3] 2L_13269279_SNP [dm6]	A	G	2.093e^-4	0.971	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
3L	5390642	3L_5390642_SNP [dm3] 3L_5397542_SNP [dm6]	C	T	2.097e^-4	0.971	INTERGENIC
3L	8546441	3L_8546441_SNP [dm3] 3L_8553341_SNP [dm6]	G	C	2.099e^-4	0.971	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2R	19888434	2R_19888434_SNP [dm3] 2R_24000911_SNP [dm6]	T	G	2.099e^-4	0.971	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13620345	3L_13620345_SNP [dm3] 3L_13627245_SNP [dm6]	T	A	2.105e^-4	0.971	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8771153	3L_8771153_SNP [dm3] 3L_8778053_SNP [dm6]	C	T	2.106e^-4	0.971	INTRON Fhos
2L	8990182	2L_8990182_SNP [dm3] 2L_8990182_SNP [dm6]	C	T	2.108e^-4	0.971	UPSTREAM rost INTERGENIC
3L	10283033	3L_10283033_INS [dm3] 3L_10289933_INS [dm6]	T	TCATTTT	2.111e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18351191	2R_18351191_SNP [dm3] 2R_22463686_SNP [dm6]	C	T	2.116e^-4	0.971	INTRON CG10384	TF binding site mE1_TFBS_chinmo
3R	10291931	3R_10291931_SNP [dm3] 3R_14466209_SNP [dm6]	C	A	2.118e^-4	0.971	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9746673	2R_9746673_SNP [dm3] 2R_13859168_SNP [dm6]	T	C	2.122e^-4	0.971	SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14641706	2R_14641706_SNP [dm3] 2R_18754201_SNP [dm6]	A	T	2.135e^-4	0.971	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
2R	4631746	2R_4631746_SNP [dm3] 2R_8744241_SNP [dm6]	C	T	2.145e^-4	0.971	INTRON CG8740 EXON CR44277
3R	10257474	3R_10257474_SNP [dm3] 3R_14431752_SNP [dm6]	T	C	2.164e^-4	0.971	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
2R	8368311	2R_8368311_SNP [dm3] 2R_12480806_SNP [dm6]	G	A	2.165e^-4	0.971	UTR_5_PRIME Dh44-R2
2R	17383074	2R_17383074_DEL [dm3] 2R_21495569_DEL [dm6]	ATCATCA	A	2.168e^-4	0.971	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4307553	3R_4307553_SNP [dm3] 3R_8481831_SNP [dm6]	C	A	2.171e^-4	0.971	INTERGENIC
3R	16467739	3R_16467739_SNP [dm3] 3R_20642017_SNP [dm6]	C	A	2.180e^-4	0.971	SYNONYMOUS_CODING Lrrk
3R	10268364	3R_10268364_SNP [dm3] 3R_14442642_SNP [dm6]	G	C	2.186e^-4	0.971	INTRON cv-c
2L	6021663	2L_6021663_SNP [dm3] 2L_6021663_SNP [dm6]	T	C	2.187e^-4	0.971	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3214549	X_3214549_INS [dm3] X_3320516_INS [dm6]	G	GA	2.195e^-4	0.971	INTRON dnc & 1 other
3L	2040725	3L_2040725_DEL [dm3] 3L_2040725_DEL [dm6]	TGTT	T	2.196e^-4	0.971	INTRON sls
2L	5787348	2L_5787348_SNP [dm3] 2L_5787348_SNP [dm6]	A	G	2.202e^-4	0.971	INTRON CG9171
2L	9545425	2L_9545425_SNP [dm3] 2L_9545425_SNP [dm6]	T	A	2.208e^-4	0.971	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2L	5572842	2L_5572842_SNP [dm3] 2L_5572842_SNP [dm6]	C	T	2.215e^-4	0.971	INTERGENIC
3L	12834469	3L_12834469_INS [dm3] 3L_12841369_INS [dm6]	A	AA	2.228e^-4	0.971	INTRON CG10960
X	5636501	X_5636501_SNP [dm3] X_5742468_SNP [dm6]	G	A	2.234e^-4	0.971	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2619834	X_2619834_SNP [dm3] X_2725801_SNP [dm6]	A	G	2.235e^-4	0.971	SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1849006	3L_1849006_INS [dm3] 3L_1849006_INS [dm6]	T	TGAATTCAGTTTT...	2.238e^-4	0.971	INTERGENIC
3L	8811778	3L_8811778_SNP [dm3] 3L_8818678_SNP [dm6]	G	T	2.240e^-4	0.971	INTERGENIC
3R	27448719	3R_27448719_SNP [dm3] 3R_31622997_SNP [dm6]	C	A	2.243e^-4	0.971	DOWNSTREAM pasha INTRON kek6
3L	1009217	3L_1009217_SNP [dm3] 3L_1009217_SNP [dm6]	C	T	2.243e^-4	0.971	INTRON trio
3L	13162252	3L_13162252_INS [dm3] 3L_13169152_INS [dm6]	T	TGTGGTTTGTTTTCCCT...	2.248e^-4	0.971	INTERGENIC
2L	2274883	2L_2274883_SNP [dm3] 2L_2274883_SNP [dm6]	T	C	2.252e^-4	0.971	INTRON CR43753
3R	25448433	3R_25448433_SNP [dm3] 3R_29622711_SNP [dm6]	G	A	2.252e^-4	0.971	INTERGENIC
2R	8382522	2R_8382522_SNP [dm3] 2R_12495017_SNP [dm6]	C	A	2.254e^-4	0.971	UPSTREAM s-cup INTRON fdl	TF binding site mE1_TFBS_cad
X	6470238	X_6470238_DEL [dm3] X_6576205_DEL [dm6]	AA	A	2.256e^-4	0.971	INTRON CG34417
3L	16871863	3L_16871863_SNP [dm3] 3L_16878763_SNP [dm6]	G	A	2.257e^-4	0.971	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12624503	X_12624503_SNP [dm3] X_12730470_SNP [dm6]	T	C	2.258e^-4	0.971	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
3R	23055791	3R_23055791_SNP [dm3] 3R_27230069_SNP [dm6]	G	A	2.274e^-4	0.974	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4804840	2L_4804840_SNP [dm3] 2L_4804840_SNP [dm6]	T	C	2.275e^-4	0.974	INTERGENIC
2R	19883730	2R_19883730_SNP [dm3] 2R_23996207_SNP [dm6]	G	A	2.282e^-4	0.975	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4415536	2L_4415536_SNP [dm3] 2L_4415536_SNP [dm6]	T	C	2.288e^-4	0.975	INTRON CG15431
X	13608231	X_13608231_SNP [dm3] X_13714198_SNP [dm6]	T	C	2.293e^-4	0.975	UTR_3_PRIME NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	20232347	3R_20232347_SNP [dm3] 3R_24406625_SNP [dm6]	T	A	2.298e^-4	0.975	INTRON nAChRalpha1
3R	26400608	3R_26400608_SNP [dm3] 3R_30574886_SNP [dm6]	A	T	2.303e^-4	0.975	UTR_3_PRIME tmod INTRON tmod
3L	837495	3L_837495_SNP [dm3] 3L_837495_SNP [dm6]	A	G	2.325e^-4	0.977	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	1838698	2R_1838698_SNP [dm3] 2R_5951193_SNP [dm6]	G	A	2.326e^-4	0.977	INTERGENIC
2L	22423944	2L_22423944_SNP [dm3] 2L_22531212_SNP [dm6]	G	A	2.328e^-4	0.977	INTERGENIC
3L	16075370	3L_16075370_SNP [dm3] 3L_16082270_SNP [dm6]	C	T	2.330e^-4	0.977	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2L	7126701	2L_7126701_SNP [dm3] 2L_7126701_SNP [dm6]	C	T	2.339e^-4	0.978	INTRON Pvf3
3R	22801072	3R_22801072_SNP [dm3] 3R_26975350_SNP [dm6]	G	A	2.342e^-4	0.978	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_sens
X	3215050	X_3215050_SNP [dm3] X_3321017_SNP [dm6]	A	T	2.356e^-4	0.982	INTRON dnc & 1 other
2L	13267826	2L_13267826_SNP [dm3] 2L_13267826_SNP [dm6]	A	G	2.382e^-4	0.982	SYNONYMOUS_CODING CG44085 INTRON CG44085
2R	13674334	2R_13674334_SNP [dm3] 2R_17786829_SNP [dm6]	G	C	2.383e^-4	0.982	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2L	5062419	2L_5062419_SNP [dm3] 2L_5062419_SNP [dm6]	A	G	2.391e^-4	0.982	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc	TF binding site mE1_TFBS_HSA
2L	4209851	2L_4209851_SNP [dm3] 2L_4209851_SNP [dm6]	G	A	2.391e^-4	0.982	INTRON ft	TF binding site mE1_TFBS_inv
2L	13267814	2L_13267814_SNP [dm3] 2L_13267814_SNP [dm6]	A	C	2.397e^-4	0.982	SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	6981267	2L_6981267_SNP [dm3] 2L_6981267_SNP [dm6]	A	T	2.401e^-4	0.982	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15377749	2R_15377749_SNP [dm3] 2R_19490244_SNP [dm6]	T	A	2.401e^-4	0.982	SYNONYMOUS_CODING Oseg6
3R	19624254	3R_19624254_SNP [dm3] 3R_23798532_SNP [dm6]	T	C	2.403e^-4	0.982	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2040736	3L_2040736_SNP [dm3] 3L_2040736_SNP [dm6]	G	T	2.405e^-4	0.982	INTRON sls
2R	14598534	2R_14598534_SNP [dm3] 2R_18711029_SNP [dm6]	A	G	2.410e^-4	0.982	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10626028	X_10626028_SNP [dm3] X_10731995_SNP [dm6]	T	C	2.414e^-4	0.982	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2684777	2L_2684777_SNP [dm3] 2L_2684777_SNP [dm6]	T	G	2.425e^-4	0.984	INTRON CG31690
3L	10283023	3L_10283023_SNP [dm3] 3L_10289923_SNP [dm6]	A	T	2.435e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15950342	2R_15950342_SNP [dm3] 2R_20062837_SNP [dm6]	G	A	2.441e^-4	0.984	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	16416266	X_16416266_SNP [dm3] X_16522233_SNP [dm6]	T	G	2.444e^-4	0.984	DOWNSTREAM Cnx14D INTRON para
3R	19916855	3R_19916855_SNP [dm3] 3R_24091133_SNP [dm6]	G	A	2.446e^-4	0.984	INTRON 4EHP
3L	3796258	3L_3796258_SNP [dm3] 3L_3796258_SNP [dm6]	T	C	2.450e^-4	0.984	INTRON CG32264
3L	12521883	3L_12521883_SNP [dm3] 3L_12528783_SNP [dm6]	G	A	2.462e^-4	0.985	SYNONYMOUS_CODING nst	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	6528834	X_6528834_SNP [dm3] X_6634801_SNP [dm6]	C	A	2.472e^-4	0.985	NON_SYNONYMOUS_CODING CG14443 INTRON pigs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10870113	2L_10870113_SNP [dm3] 2L_10870113_SNP [dm6]	A	T	2.473e^-4	0.985	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21458786	X_21458786_SNP [dm3] X_21587759_SNP [dm6]	C	T	2.477e^-4	0.985	INTERGENIC
2R	9746793	2R_9746793_SNP [dm3] 2R_13859288_SNP [dm6]	A	C	2.479e^-4	0.985	SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10283028	3L_10283028_SNP [dm3] 3L_10289928_SNP [dm6]	T	G	2.497e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1135505	2L_1135505_INS [dm3] 2L_1135505_INS [dm6]	C	TTCTTACTTATAACGGTTGC...	2.500e^-4	0.988	INTRON CG4577	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15340341	3R_15340341_DEL [dm3] 3R_19514619_DEL [dm6]	ATTTTGT	A	2.503e^-4	0.988	INTRON Dys
3L	17423426	3L_17423426_SNP [dm3] 3L_17430326_SNP [dm6]	G	C	2.510e^-4	0.989	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc	TF binding site BDTNP1_TFBS_dl
2R	19883357	2R_19883357_DEL [dm3] 2R_23995834_DEL [dm6]	TAG	A	2.515e^-4	0.989	UPSTREAM CG3860 INTRON Unc-89	TF binding site mE1_TFBS_cad
2L	3929013	2L_3929013_SNP [dm3] 2L_3929013_SNP [dm6]	G	A	2.529e^-4	0.991	INTRON fred
2R	9746305	2R_9746305_SNP [dm3] 2R_13858800_SNP [dm6]	A	C	2.532e^-4	0.991	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	21927713	3R_21927713_SNP [dm3] 3R_26101991_SNP [dm6]	T	C	2.539e^-4	0.992	INTERGENIC
X	3214988	X_3214988_DEL [dm3] X_3320955_DEL [dm6]	ATAT	A	2.546e^-4	0.993	INTRON dnc & 1 other
3R	17000695	3R_17000695_SNP [dm3] 3R_21174973_SNP [dm6]	A	G	2.555e^-4	0.994	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3761310	X_3761310_SNP [dm3] X_3867277_SNP [dm6]	C	T	2.561e^-4	0.994	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
2L	8555233	2L_8555233_SNP [dm3] 2L_8555233_SNP [dm6]	A	C	2.572e^-4	0.996	INTRON Sema-1a
3R	23326749	3R_23326749_DEL [dm3] 3R_27501027_DEL [dm6]	ACCAA	A	2.582e^-4	0.996	DOWNSTREAM CG43139 INTERGENIC
2L	9359134	2L_9359134_SNP [dm3] 2L_9359134_SNP [dm6]	G	T	2.589e^-4	0.996	INTERGENIC
3R	18050637	3R_18050637_SNP [dm3] 3R_22224915_SNP [dm6]	T	A	2.589e^-4	0.996	INTRON SKIP
3L	7739485	3L_7739485_SNP [dm3] 3L_7746385_SNP [dm6]	G	A	2.594e^-4	0.996	UPSTREAM CG13685 INTRON CG32373
3R	14071070	3R_14071070_DEL [dm3] 3R_18245348_DEL [dm6]	CGTCCCAATATTTC...	C	2.598e^-4	0.996	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8705569	2R_8705569_SNP [dm3] 2R_12818064_SNP [dm6]	T	A	2.618e^-4	0.996	INTERGENIC
3L	5617448	3L_5617448_SNP [dm3] 3L_5624348_SNP [dm6]	A	G	2.626e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	17834431	2R_17834431_SNP [dm3] 2R_21946926_SNP [dm6]	T	C	2.626e^-4	0.996	DOWNSTREAM Fili INTERGENIC
3L	3006118	3L_3006118_SNP [dm3] 3L_3006118_SNP [dm6]	G	A	2.632e^-4	0.996	INTRON FMRFaR
2L	13429101	2L_13429101_SNP [dm3] 2L_13429101_SNP [dm6]	A	T	2.636e^-4	0.996	INTRON CG42784
3R	14105773	3R_14105773_SNP [dm3] 3R_18280051_SNP [dm6]	C	T	2.642e^-4	0.996	UPSTREAM CG7142 INTRON eIF-1A
2L	15329648	2L_15329648_SNP [dm3] 2L_15329648_SNP [dm6]	C	T	2.644e^-4	0.996	INTERGENIC
2R	11714607	2R_11714607_SNP [dm3] 2R_15827102_SNP [dm6]	C	A	2.645e^-4	0.996	SYNONYMOUS_CODING Poxn INTRON tun
3L	7903123	3L_7903123_SNP [dm3] 3L_7910023_SNP [dm6]	A	T	2.647e^-4	0.996	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6971567	2L_6971567_SNP [dm3] 2L_6971567_SNP [dm6]	A	G	2.650e^-4	0.996	UPSTREAM CR43142 INTRON snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2332302	2L_2332302_SNP [dm3] 2L_2332302_SNP [dm6]	A	G	2.661e^-4	0.998	INTRON CG9967 & 1 other
3R	16720898	3R_16720898_SNP [dm3] 3R_20895176_SNP [dm6]	A	G	2.668e^-4	0.999	UTR_3_PRIME CG10830
X	7651345	X_7651345_SNP [dm3] X_7757312_SNP [dm6]	C	T	2.673e^-4	0.999	INTERGENIC
3R	6670435	3R_6670435_SNP [dm3] 3R_10844713_SNP [dm6]	G	C	2.679e^-4	0.999	INTRON Cad86C
2R	19827402	2R_19827402_SNP [dm3] 2R_23939879_SNP [dm6]	T	C	2.693e^-4	1	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16983359	2R_16983359_SNP [dm3] 2R_21095854_SNP [dm6]	A	T	2.704e^-4	1	DOWNSTREAM CG4038 INTRON CG34396
2L	19516376	2L_19516376_SNP [dm3] 2L_19516376_SNP [dm6]	A	G	2.710e^-4	1	INTRON CG10186	TF binding site mE1_TFBS_chinmo
2L	7085305	2L_7085305_SNP [dm3] 2L_7085305_SNP [dm6]	G	T	2.726e^-4	1	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	16870827	3R_16870827_SNP [dm3] 3R_21045105_SNP [dm6]	G	A	2.731e^-4	1	NON_SYNONYMOUS_CODING CG31189 DOWNSTREAM CG12278 & 1 other
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	2.744e^-4	1	INTERGENIC
2L	13259282	2L_13259282_SNP [dm3] 2L_13259282_SNP [dm6]	C	A	2.745e^-4	1	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
3R	16033021	3R_16033021_SNP [dm3] 3R_20207299_SNP [dm6]	C	T	2.756e^-4	1	DOWNSTREAM CG17199 INTRON Nlg4
2R	14634568	2R_14634568_SNP [dm3] 2R_18747063_SNP [dm6]	G	A	2.763e^-4	1	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
2L	9346103	2L_9346103_SNP [dm3] 2L_9346103_SNP [dm6]	A	G	2.765e^-4	1	INTERGENIC
2L	11074203	2L_11074203_SNP [dm3] 2L_11074203_SNP [dm6]	C	T	2.772e^-4	1	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12173687	2L_12173687_SNP [dm3] 2L_12173687_SNP [dm6]	G	T	2.784e^-4	1	UTR_3_PRIME crok DOWNSTREAM CR43356	TF binding site BDTNP1_TFBS_hb
X	5925937	X_5925937_SNP [dm3] X_6031904_SNP [dm6]	C	A	2.786e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
X	11357097	X_11357097_SNP [dm3] X_11463064_SNP [dm6]	C	T	2.789e^-4	1	INTRON CG43155
X	18973784	X_18973784_SNP [dm3] X_19079751_SNP [dm6]	T	G	2.789e^-4	1	INTERGENIC
3L	2646025	3L_2646025_SNP [dm3] 3L_2646025_SNP [dm6]	A	G	2.794e^-4	1	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16848553	X_16848553_INS [dm3] X_16954520_INS [dm6]	C	TGACTTAAGA	2.807e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10913321	3L_10913321_SNP [dm3] 3L_10920221_SNP [dm6]	A	G	2.810e^-4	1	INTERGENIC
3R	22763400	3R_22763400_SNP [dm3] 3R_26937678_SNP [dm6]	C	A	2.814e^-4	1	INTRON sda
3R	16795723	3R_16795723_SNP [dm3] 3R_20970001_SNP [dm6]	A	G	2.817e^-4	1	INTRON Atpalpha
2L	20882999	2L_20882999_SNP [dm3] 2L_20882999_SNP [dm6]	A	T	2.817e^-4	1	INTRON sky & 1 other
2R	14572706	2R_14572706_SNP [dm3] 2R_18685201_SNP [dm6]	C	T	2.837e^-4	1	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16389978	2R_16389978_SNP [dm3] 2R_20502473_SNP [dm6]	G	T	2.838e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	3198986	X_3198986_SNP [dm3] X_3304953_SNP [dm6]	T	G	2.840e^-4	1	INTRON dnc	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	2996094	X_2996094_SNP [dm3] X_3102061_SNP [dm6]	G	A	2.848e^-4	1	INTRON kirre
3L	7877042	3L_7877042_SNP [dm3] 3L_7883942_SNP [dm6]	A	G	2.849e^-4	1	INTRON CG32365
3L	2801075	3L_2801075_SNP [dm3] 3L_2801075_SNP [dm6]	T	A	2.850e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16697570	2L_16697570_SNP [dm3] 2L_16697570_SNP [dm6]	A	C	2.857e^-4	1	SYNONYMOUS_CODING grp UPSTREAM mir-9c & 2 others EXON CR44975
3L	12242384	3L_12242384_SNP [dm3] 3L_12249284_SNP [dm6]	G	A	2.866e^-4	1	INTRON app	TF binding site mE1_TFBS_cad
3R	14030400	3R_14030400_SNP [dm3] 3R_18204678_SNP [dm6]	G	C	2.870e^-4	1	INTRON CG7985
3L	3077144	3L_3077144_SNP [dm3] 3L_3077144_SNP [dm6]	C	T	2.886e^-4	1	UPSTREAM CG11486 INTRON CG11486	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	3573441	2R_3573441_SNP [dm3] 2R_7685936_SNP [dm6]	A	C	2.887e^-4	1	INTRON CG1399
2R	15384751	2R_15384751_SNP [dm3] 2R_19497246_SNP [dm6]	G	A	2.891e^-4	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16981866	2R_16981866_SNP [dm3] 2R_21094361_SNP [dm6]	A	T	2.895e^-4	1	INTRON CG34396
2L	17980513	2L_17980513_SNP [dm3] 2L_17980513_SNP [dm6]	A	G	2.896e^-4	1	SYNONYMOUS_CODING btv
2R	8375091	2R_8375091_SNP [dm3] 2R_12487586_SNP [dm6]	A	G	2.898e^-4	1	UTR_3_PRIME Dh44-R2 & 1 other UPSTREAM CG34234 DOWNSTREAM Dh44-R2 & 1 other
3R	15340349	3R_15340349_INS [dm3] 3R_19514627_INS [dm6]	A	AACATATAA	2.898e^-4	1	INTRON Dys
2L	11457830	2L_11457830_SNP [dm3] 2L_11457830_SNP [dm6]	G	A	2.901e^-4	1	INTERGENIC
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	2.913e^-4	1	INTRON CG31690
2L	4394983	2L_4394983_SNP [dm3] 2L_4394983_SNP [dm6]	A	C	2.926e^-4	1	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11457833	2L_11457833_SNP [dm3] 2L_11457833_SNP [dm6]	C	T	2.936e^-4	1	INTERGENIC
2L	5783740	2L_5783740_DEL [dm3] 2L_5783740_DEL [dm6]	TGTGTTCT	T	2.948e^-4	1	UPSTREAM CG31913 INTRON CG9171
2R	20790904	2R_20790904_DEL [dm3] 2R_24903381_DEL [dm6]	CTC	C	2.968e^-4	1	UPSTREAM NaCP60E DOWNSTREAM RpL41 INTRON NaCP60E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	14634490	2R_14634490_SNP [dm3] 2R_18746985_SNP [dm6]	A	T	2.981e^-4	1	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
2L	6585965	2L_6585965_SNP [dm3] 2L_6585965_SNP [dm6]	A	G	2.981e^-4	1	INTRON CG11319
3R	16034613	3R_16034613_SNP [dm3] 3R_20208891_SNP [dm6]	C	T	2.985e^-4	1	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	7487992	3L_7487992_SNP [dm3] 3L_7494892_SNP [dm6]	T	G	2.986e^-4	1	SYNONYMOUS_CODING Cyp4d8	TF binding site mE1_TFBS_cad
2L	4417495	2L_4417495_SNP [dm3] 2L_4417495_SNP [dm6]	G	T	2.998e^-4	1	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	8380064	2R_8380064_SNP [dm3] 2R_12492559_SNP [dm6]	T	C	3.002e^-4	1	INTRON fdl
2R	8380068	2R_8380068_SNP [dm3] 2R_12492563_SNP [dm6]	G	A	3.006e^-4	1	INTRON fdl
2R	16118708	2R_16118708_SNP [dm3] 2R_20231203_SNP [dm6]	C	G	3.007e^-4	1	UPSTREAM CG11044 INTERGENIC
2L	6493889	2L_6493889_DEL [dm3] 2L_6493889_DEL [dm6]	AAA	A	3.011e^-4	1	INTRON CG31638 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18361593	3L_18361593_SNP [dm3] 3L_18368493_SNP [dm6]	T	A	3.016e^-4	1	INTERGENIC
X	18393133	X_18393133_SNP [dm3] X_18499100_SNP [dm6]	C	T	3.016e^-4	1	INTRON GalNAc-T2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	10500200	X_10500200_SNP [dm3] X_10606167_SNP [dm6]	T	C	3.052e^-4	1	INTRON CG43347
2L	4460149	2L_4460149_SNP [dm3] 2L_4460149_SNP [dm6]	C	G	3.059e^-4	1	UPSTREAM mRpL27 INTRON CG15435	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	18225549	2R_18225549_SNP [dm3] 2R_22338044_SNP [dm6]	C	A	3.061e^-4	1	INTRON Liprin-gamma
3L	8286344	3L_8286344_SNP [dm3] 3L_8293244_SNP [dm6]	T	G	3.062e^-4	1	INTRON CG7201
3L	17815027	3L_17815027_SNP [dm3] 3L_17821927_SNP [dm6]	A	G	3.072e^-4	1	SYNONYMOUS_CODING Ir75c
3L	19351754	3L_19351754_SNP [dm3] 3L_19358654_SNP [dm6]	T	C	3.076e^-4	1	INTRON CG32206	TF binding site BDTNP1_TFBS_twi
X	6159896	X_6159896_INS [dm3] X_6265863_INS [dm6]	T	TAT	3.089e^-4	1	INTRON schlank	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	19617989	X_19617989_SNP [dm3] X_19723956_SNP [dm6]	A	G	3.123e^-4	1	INTRON CG12531
2L	18538838	2L_18538838_SNP [dm3] 2L_18538838_SNP [dm6]	T	C	3.123e^-4	1	INTRON Pde11
2L	19271231	2L_19271231_SNP [dm3] 2L_19271231_SNP [dm6]	T	G	3.140e^-4	1	INTRON CR44190
2R	7281419	2R_7281419_SNP [dm3] 2R_11393914_SNP [dm6]	G	T	3.144e^-4	1	UPSTREAM tRNA:CR30257 INTRON sprt
2L	4460151	2L_4460151_SNP [dm3] 2L_4460151_SNP [dm6]	A	C	3.146e^-4	1	UPSTREAM mRpL27 INTRON CG15435	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	322853	3L_322853_SNP [dm3] 3L_322853_SNP [dm6]	C	A	3.150e^-4	1	INTRON CG32344	TF binding site mE1_TFBS_HSA
X	2764581	X_2764581_INS [dm3] X_2870548_INS [dm6]	T	TT	3.159e^-4	1	INTRON kirre
X	22222015	X_22222015_INS [dm3] X_22820179_INS [dm6]	C	CCGAAA	3.160e^-4	1	INTERGENIC
3R	17393625	3R_17393625_SNP [dm3] 3R_21567903_SNP [dm6]	A	T	3.165e^-4	1	INTRON CG15498
X	21458356	X_21458356_SNP [dm3] X_21587329_SNP [dm6]	A	T	3.165e^-4	1	INTERGENIC
3L	4983699	3L_4983699_SNP [dm3] 3L_4983699_SNP [dm6]	A	G	3.170e^-4	1	INTRON Con
2L	2738635	2L_2738635_SNP [dm3] 2L_2738635_SNP [dm6]	T	C	3.177e^-4	1	DOWNSTREAM mir-4914 INTRON CG31689
2R	15377752	2R_15377752_SNP [dm3] 2R_19490247_SNP [dm6]	T	C	3.178e^-4	1	SYNONYMOUS_CODING Oseg6
3R	21927731	3R_21927731_SNP [dm3] 3R_26102009_SNP [dm6]	C	A	3.187e^-4	1	INTERGENIC
2R	20114983	2R_20114983_SNP [dm3] 2R_24227460_SNP [dm6]	C	G	3.187e^-4	1	INTRON CG30419
3L	23835700	3L_23835700_SNP [dm3] 3L_23842600_SNP [dm6]	G	C	3.189e^-4	1	INTRON CG40470
3R	24359067	3R_24359067_SNP [dm3] 3R_28533345_SNP [dm6]	C	T	3.191e^-4	1	INTRON Ppn	TF binding site BDTNP1_TFBS_twi
2L	908023	2L_908023_SNP [dm3] 2L_908023_SNP [dm6]	C	A	3.196e^-4	1	INTERGENIC
3L	4595329	3L_4595329_SNP [dm3] 3L_4595329_SNP [dm6]	G	A	3.204e^-4	1	SYNONYMOUS_CODING Src64B	TF binding site mE1_TFBS_cad
2L	7252531	2L_7252531_SNP [dm3] 2L_7252531_SNP [dm6]	T	A	3.207e^-4	1	NON_SYNONYMOUS_CODING CG13786
3R	18836171	3R_18836171_SNP [dm3] 3R_23010449_SNP [dm6]	C	A	3.207e^-4	1	UTR_5_PRIME CG34375 UPSTREAM CG34375	TF binding site mE1_TFBS_chinmo
X	18970213	X_18970213_DEL [dm3] X_19076180_DEL [dm6]	AA	A	3.209e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18368868	2L_18368868_SNP [dm3] 2L_18368868_SNP [dm6]	T	G	3.210e^-4	1	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7085317	2L_7085317_SNP [dm3] 2L_7085317_SNP [dm6]	C	T	3.217e^-4	1	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	18576121	2L_18576121_SNP [dm3] 2L_18576121_SNP [dm6]	A	G	3.223e^-4	1	INTRON Pde11
3R	17469986	3R_17469986_DEL [dm3] 3R_21644264_DEL [dm6]	GA	G	3.225e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	2985542	3R_2985542_SNP [dm3] 3R_7159820_SNP [dm6]	G	A	3.225e^-4	1	INTERGENIC
2L	7214580	2L_7214580_SNP [dm3] 2L_7214580_SNP [dm6]	A	T	3.231e^-4	1	INTRON CG13784
2L	12386649	2L_12386649_SNP [dm3] 2L_12386649_SNP [dm6]	T	A	3.233e^-4	1	INTRON bru-2
3L	11663028	3L_11663028_SNP [dm3] 3L_11669928_SNP [dm6]	A	G	3.246e^-4	1	INTRON CG32085
2L	4738122	2L_4738122_SNP [dm3] 2L_4738122_SNP [dm6]	G	T	3.260e^-4	1	INTRON CG15630	TF binding site mE1_TFBS_inv
2L	11452026	2L_11452026_SNP [dm3] 2L_11452026_SNP [dm6]	T	A	3.270e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14071225	2L_14071225_SNP [dm3] 2L_14071225_SNP [dm6]	A	G	3.276e^-4	1	INTRON nAChRalpha5
2L	3673703	2L_3673703_INS [dm3] 2L_3673703_INS [dm6]	G	GG	3.281e^-4	1	INTRON CG34340
3R	24788922	3R_24788922_SNP [dm3] 3R_28963200_SNP [dm6]	A	C	3.289e^-4	1	INTRON CG14521
2R	18682670	2R_18682670_SNP [dm3] 2R_22795165_SNP [dm6]	C	A	3.290e^-4	1	INTRON CG42260
3L	731872	3L_731872_SNP [dm3] 3L_731872_SNP [dm6]	G	A	3.290e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2242088	3L_2242088_SNP [dm3] 3L_2242088_SNP [dm6]	T	C	3.291e^-4	1	SYNONYMOUS_CODING ACXD UTR_3_PRIME ACXD
3L	10283014	3L_10283014_SNP [dm3] 3L_10289914_SNP [dm6]	G	A	3.307e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16437398	2R_16437398_SNP [dm3] 2R_20549893_SNP [dm6]	T	C	3.312e^-4	1	SYNONYMOUS_CODING Cpr57A UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12837142	3L_12837142_DEL [dm3] 3L_12844042_DEL [dm6]	TAAAGCTTGT	T	3.318e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	2858582	2L_2858582_DEL [dm3] 2L_2858582_DEL [dm6]	ACGAGATTTGTT...	A	3.328e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20791277	3R_20791277_SNP [dm3] 3R_24965555_SNP [dm6]	C	G	3.331e^-4	1	INTERGENIC
3L	3916618	3L_3916618_SNP [dm3] 3L_3916618_SNP [dm6]	G	A	3.331e^-4	1	INTRON Eip63F-1	TF binding site mE1_TFBS_cad
2L	11457838	2L_11457838_SNP [dm3] 2L_11457838_SNP [dm6]	A	G	3.344e^-4	1	INTERGENIC
2R	13726573	2R_13726573_SNP [dm3] 2R_17839068_SNP [dm6]	A	G	3.348e^-4	1	SYNONYMOUS_CODING grh	TF binding site BDTNP1_TFBS_da
2R	14634565	2R_14634565_SNP [dm3] 2R_18747060_SNP [dm6]	T	A	3.351e^-4	1	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
2R	3914443	2R_3914443_SNP [dm3] 2R_8026938_SNP [dm6]	T	G	3.360e^-4	1	DOWNSTREAM CR45267 INTERGENIC
2L	3270273	2L_3270273_SNP [dm3] 2L_3270273_SNP [dm6]	T	C	3.361e^-4	1	NON_SYNONYMOUS_CODING CG3347
X	4762919	X_4762919_SNP [dm3] X_4868886_SNP [dm6]	G	A	3.363e^-4	1	INTRON CG42594
2R	16440932	2R_16440932_SNP [dm3] 2R_20553427_SNP [dm6]	T	C	3.366e^-4	1	INTERGENIC
2L	6255167	2L_6255167_SNP [dm3] 2L_6255167_SNP [dm6]	C	A	3.378e^-4	1	UPSTREAM CG9486 INTRON Ddr
X	19625293	X_19625293_SNP [dm3] X_19731260_SNP [dm6]	C	A	3.382e^-4	1	INTRON AP-1-2beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8352159	3R_8352159_SNP [dm3] 3R_12526437_SNP [dm6]	C	G	3.383e^-4	1	NON_SYNONYMOUS_CODING Hug SPLICE_SITE_REGION Hug INTRON Octbeta3R
X	5464193	X_5464193_SNP [dm3] X_5570160_SNP [dm6]	T	C	3.384e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26878268	3R_26878268_SNP [dm3] 3R_31052546_SNP [dm6]	A	G	3.387e^-4	1	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13977716	3L_13977716_SNP [dm3] 3L_13984616_SNP [dm6]	G	A	3.412e^-4	1	INTRON CG17364
2R	15950462	2R_15950462_SNP [dm3] 2R_20062957_SNP [dm6]	A	G	3.413e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	12603262	2L_12603262_SNP [dm3] 2L_12603262_SNP [dm6]	T	G	3.413e^-4	1	INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7903046	3L_7903046_SNP [dm3] 3L_7909946_SNP [dm6]	G	C	3.428e^-4	1	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1868218	2L_1868218_SNP [dm3] 2L_1868218_SNP [dm6]	C	G	3.429e^-4	1	INTRON CG31663
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	3.439e^-4	1	UTR_3_PRIME laccase2
2L	4745636	2L_4745636_SNP [dm3] 2L_4745636_SNP [dm6]	T	A	3.440e^-4	1	INTRON CG15630
2L	7087234	2L_7087234_DEL [dm3] 2L_7087234_DEL [dm6]	TGGCAAAACT	T	3.441e^-4	1	INTERGENIC
2R	13000086	2R_13000086_SNP [dm3] 2R_17112581_SNP [dm6]	G	A	3.450e^-4	1	INTRON CG15611
X	9410218	X_9410218_SNP [dm3] X_9516185_SNP [dm6]	T	C	3.459e^-4	1	INTRON CG32700
2R	1802468	2R_1802468_SNP [dm3] 2R_5914963_SNP [dm6]	G	T	3.460e^-4	1	INTRON CG43366
2L	16817282	2L_16817282_SNP [dm3] 2L_16817282_SNP [dm6]	G	A	3.467e^-4	1	UTR_5_PRIME mdy INTRON CG13280 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17508704	2L_17508704_SNP [dm3] 2L_17508704_SNP [dm6]	C	T	3.468e^-4	1	INTRON Dhc36C	TF binding site mE1_TFBS_cad
X	2619858	X_2619858_SNP [dm3] X_2725825_SNP [dm6]	C	A	3.471e^-4	1	SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18192913	2L_18192913_SNP [dm3] 2L_18192913_SNP [dm6]	G	C	3.495e^-4	1	INTRON CG42750
2L	6106431	2L_6106431_SNP [dm3] 2L_6106431_SNP [dm6]	T	A	3.500e^-4	1	INTRON stai
2L	2685312	2L_2685312_SNP [dm3] 2L_2685312_SNP [dm6]	A	T	3.502e^-4	1	INTRON CG31690
2L	5797310	2L_5797310_SNP [dm3] 2L_5797310_SNP [dm6]	A	C	3.504e^-4	1	INTRON CG9171
2L	5572792	2L_5572792_SNP [dm3] 2L_5572792_SNP [dm6]	A	C	3.510e^-4	1	INTERGENIC
2L	3082821	2L_3082821_SNP [dm3] 2L_3082821_SNP [dm6]	G	A	3.510e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13674631	2R_13674631_SNP [dm3] 2R_17787126_SNP [dm6]	A	G	3.512e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
X	19342959	X_19342959_SNP [dm3] X_19448926_SNP [dm6]	G	A	3.519e^-4	1	INTRON kek5
2R	1251941	2R_1251941_SNP [dm3] 2R_5364436_SNP [dm6]	A	T	3.522e^-4	1	INTRON CR42646
X	16861190	X_16861190_SNP [dm3] X_16967157_SNP [dm6]	G	A	3.529e^-4	1	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5662065	3L_5662065_SNP [dm3] 3L_5668965_SNP [dm6]	C	T	3.535e^-4	1	SPLICE_SITE_REGION sif SYNONYMOUS_CODING sif UTR_5_PRIME sif
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	3.539e^-4	1	INTRON CG31690
2L	1540044	2L_1540044_SNP [dm3] 2L_1540044_SNP [dm6]	A	G	3.546e^-4	1	INTERGENIC
2L	4382244	2L_4382244_SNP [dm3] 2L_4382244_SNP [dm6]	T	C	3.562e^-4	1	SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	837496	3L_837496_SNP [dm3] 3L_837496_SNP [dm6]	G	A	3.566e^-4	1	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	7363777	2L_7363777_SNP [dm3] 2L_7363777_SNP [dm6]	A	T	3.583e^-4	1	INTRON Wnt10
3L	16984600	3L_16984600_SNP [dm3] 3L_16991500_SNP [dm6]	G	T	3.593e^-4	1	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_chinmo
2L	7452226	2L_7452226_SNP [dm3] 2L_7452226_SNP [dm6]	C	T	3.598e^-4	1	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	2390908	2L_2390908_SNP [dm3] 2L_2390908_SNP [dm6]	G	A	3.607e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9058799	3R_9058799_SNP [dm3] 3R_13233077_SNP [dm6]	G	A	3.608e^-4	1	SYNONYMOUS_CODING Ace
2R	14589183	2R_14589183_SNP [dm3] 2R_18701678_SNP [dm6]	A	G	3.617e^-4	1	UTR_3_PRIME Sik3 INTRON Sik3
2L	9156382	2L_9156382_SNP [dm3] 2L_9156382_SNP [dm6]	G	T	3.622e^-4	1	INTRON CG32982
3L	1378772	3L_1378772_SNP [dm3] 3L_1378772_SNP [dm6]	T	A	3.643e^-4	1	INTRON Ptp61F & 1 other
2L	21761087	2L_21761087_SNP [dm3] 2L_21761087_SNP [dm6]	A	C	3.643e^-4	1	DOWNSTREAM CG1416 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9294506	X_9294506_SNP [dm3] X_9400473_SNP [dm6]	C	T	3.673e^-4	1	INTRON mgl
2L	2367445	2L_2367445_SNP [dm3] 2L_2367445_SNP [dm6]	G	A	3.679e^-4	1	SYNONYMOUS_CODING Axud1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8722380	3L_8722380_SNP [dm3] 3L_8729280_SNP [dm6]	A	C	3.679e^-4	1	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
3R	24382496	3R_24382496_SNP [dm3] 3R_28556774_SNP [dm6]	C	G	3.679e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12549515	2L_12549515_SNP [dm3] 2L_12549515_SNP [dm6]	C	G	3.680e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20881515	2L_20881515_SNP [dm3] 2L_20881515_SNP [dm6]	G	A	3.682e^-4	1	INTRON sky & 1 other
2R	16361612	2R_16361612_SNP [dm3] 2R_20474107_SNP [dm6]	A	G	3.685e^-4	1	INTRON CG12484
3R	15959772	3R_15959772_SNP [dm3] 3R_20134050_SNP [dm6]	C	T	3.688e^-4	1	INTERGENIC
2R	1251043	2R_1251043_DEL [dm3] 2R_5363538_DEL [dm6]	CCAATATAAGATATTCTCCA...	C	3.693e^-4	1	UPSTREAM CG10417 INTRON CR42646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	7651342	X_7651342_SNP [dm3] X_7757309_SNP [dm6]	T	C	3.695e^-4	1	INTERGENIC
X	3103627	X_3103627_SNP [dm3] X_3209594_SNP [dm6]	A	T	3.698e^-4	1	INTRON dnc
2L	5958659	2L_5958659_SNP [dm3] 2L_5958659_SNP [dm6]	T	C	3.714e^-4	1	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5988690	3L_5988690_DEL [dm3] 3L_5995590_DEL [dm6]	GCGAGTGGGAGGACTTAAAC...	G	3.717e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	13973025	2L_13973025_SNP [dm3] 2L_13973025_SNP [dm6]	A	T	3.721e^-4	1	UPSTREAM He DOWNSTREAM NimC1 & 1 other INTERGENIC
3L	15693803	3L_15693803_SNP [dm3] 3L_15700703_SNP [dm6]	C	T	3.728e^-4	1	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	7649735	X_7649735_SNP [dm3] X_7755702_SNP [dm6]	G	A	3.754e^-4	1	INTERGENIC
2R	17275482	2R_17275482_SNP [dm3] 2R_21387977_SNP [dm6]	T	C	3.768e^-4	1	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_sens
2R	8362435	2R_8362435_SNP [dm3] 2R_12474930_SNP [dm6]	G	C	3.773e^-4	1	DOWNSTREAM CG8550 INTRON Dh44-R2
3R	23856711	3R_23856711_SNP [dm3] 3R_28030989_SNP [dm6]	G	C	3.774e^-4	1	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5114045	3R_5114045_SNP [dm3] 3R_9288323_SNP [dm6]	A	T	3.777e^-4	1	INTERGENIC
2R	6894282	2R_6894282_SNP [dm3] 2R_11006777_SNP [dm6]	T	G	3.779e^-4	1	INTRON luna
2R	16648786	2R_16648786_MNP [dm3] 2R_20761281_MNP [dm6]	TTT	AAC	3.782e^-4	1	INTERGENIC
3R	21927721	3R_21927721_SNP [dm3] 3R_26101999_SNP [dm6]	C	A	3.788e^-4	1	INTERGENIC
2L	7252523	2L_7252523_SNP [dm3] 2L_7252523_SNP [dm6]	C	A	3.795e^-4	1	SYNONYMOUS_CODING CG13786
2R	14634514	2R_14634514_SNP [dm3] 2R_18747009_SNP [dm6]	T	A	3.805e^-4	1	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
X	10621309	X_10621309_SNP [dm3] X_10727276_SNP [dm6]	A	T	3.806e^-4	1	INTRON CG32676
X	12579985	X_12579985_SNP [dm3] X_12685952_SNP [dm6]	G	A	3.821e^-4	1	UTR_3_PRIME Smr DOWNSTREAM Smr
X	4153698	X_4153698_INS [dm3] X_4259665_INS [dm6]	A	AC	3.828e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2996142	X_2996142_SNP [dm3] X_3102109_SNP [dm6]	G	C	3.838e^-4	1	INTRON kirre
3L	3493763	3L_3493763_SNP [dm3] 3L_3493763_SNP [dm6]	G	A	3.857e^-4	1	INTRON CG42324	TF binding site mE1_TFBS_inv
2R	11172647	2R_11172647_SNP [dm3] 2R_15285142_SNP [dm6]	A	C	3.869e^-4	1	INTRON Trpm
3R	19791519	3R_19791519_SNP [dm3] 3R_23965797_SNP [dm6]	T	C	3.871e^-4	1	SPLICE_SITE_REGION CG31140 INTRON CG31140	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6736512	3L_6736512_SNP [dm3] 3L_6743412_SNP [dm6]	A	C	3.878e^-4	1	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	4575484	3R_4575484_SNP [dm3] 3R_8749762_SNP [dm6]	C	T	3.882e^-4	1	UTR_3_PRIME CG34135 & 1 other INTRON CG8223
2R	18474189	2R_18474189_SNP [dm3] 2R_22586684_SNP [dm6]	G	A	3.892e^-4	1	INTRON dnr1
3R	10254089	3R_10254089_SNP [dm3] 3R_14428367_SNP [dm6]	C	T	3.894e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
2L	3773359	2L_3773359_SNP [dm3] 2L_3773359_SNP [dm6]	A	T	3.904e^-4	1	INTRON bowl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12312950	3L_12312950_SNP [dm3] 3L_12319850_SNP [dm6]	G	A	3.914e^-4	1	INTERGENIC
2L	19732070	2L_19732070_SNP [dm3] 2L_19732070_SNP [dm6]	T	A	3.915e^-4	1	DOWNSTREAM CG10462 & 1 other INTERGENIC
3L	9593446	3L_9593446_SNP [dm3] 3L_9600346_SNP [dm6]	C	T	3.920e^-4	1	DOWNSTREAM CG3088 & 1 other INTERGENIC
2R	13674200	2R_13674200_SNP [dm3] 2R_17786695_SNP [dm6]	A	T	3.921e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3L	2181875	3L_2181875_SNP [dm3] 3L_2181875_SNP [dm6]	C	T	3.925e^-4	1	INTERGENIC
3L	15714973	3L_15714973_SNP [dm3] 3L_15721873_SNP [dm6]	A	T	3.928e^-4	1	UTR_3_PRIME comm DOWNSTREAM comm
3L	3928379	3L_3928379_DEL [dm3] 3L_3928379_DEL [dm6]	AA	A	3.945e^-4	1	INTRON Eip63F-1
3R	16143535	3R_16143535_SNP [dm3] 3R_20317813_SNP [dm6]	T	A	3.952e^-4	1	UPSTREAM CG42668 INTRON CG42668
2L	8660462	2L_8660462_SNP [dm3] 2L_8660462_SNP [dm6]	C	T	3.965e^-4	1	SYNONYMOUS_CODING Sema-1a
2R	8378972	2R_8378972_SNP [dm3] 2R_12491467_SNP [dm6]	T	A	3.965e^-4	1	UPSTREAM fdl INTRON fdl
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	3.967e^-4	1	INTRON Mob2
3R	16870903	3R_16870903_SNP [dm3] 3R_21045181_SNP [dm6]	T	C	3.969e^-4	1	DOWNSTREAM CG12278 & 1 other INTRON CG31189
3L	12488618	3L_12488618_SNP [dm3] 3L_12495518_SNP [dm6]	A	C	3.975e^-4	1	INTRON CG10657	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	3402411	2L_3402411_SNP [dm3] 2L_3402411_SNP [dm6]	C	G	3.980e^-4	1	INTERGENIC
3L	10980531	3L_10980531_SNP [dm3] 3L_10987431_SNP [dm6]	G	C	3.981e^-4	1	INTRON klu
3L	3059638	3L_3059638_INS [dm3] 3L_3059638_INS [dm6]	T	TG	3.981e^-4	1	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	14628581	X_14628581_SNP [dm3] X_14734548_SNP [dm6]	T	C	3.987e^-4	1	INTRON NetB
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	3.989e^-4	1	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	6630087	3L_6630087_SNP [dm3] 3L_6636987_SNP [dm6]	C	T	4.002e^-4	1	INTERGENIC
2R	12046060	2R_12046060_SNP [dm3] 2R_16158555_SNP [dm6]	T	C	4.008e^-4	1	SYNONYMOUS_CODING CG10734 INTRON lbk
3L	13065606	3L_13065606_SNP [dm3] 3L_13072506_SNP [dm6]	C	G	4.018e^-4	1	INTERGENIC
3L	12282821	3L_12282821_SNP [dm3] 3L_12289721_SNP [dm6]	C	A	4.018e^-4	1	EXON CR45658
3L	23166571	3L_23166571_SNP [dm3] 3L_23173471_SNP [dm6]	A	C	4.030e^-4	1	UPSTREAM CG34031 INTERGENIC
2L	6255377	2L_6255377_SNP [dm3] 2L_6255377_SNP [dm6]	T	C	4.042e^-4	1	UPSTREAM CG9486 INTRON Ddr
2L	6963562	2L_6963562_SNP [dm3] 2L_6963562_SNP [dm6]	A	G	4.045e^-4	1	SPLICE_SITE_REGION sip2 UTR_5_PRIME sip2 UPSTREAM Coprox INTRON sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10980553	3L_10980553_SNP [dm3] 3L_10987453_SNP [dm6]	A	T	4.047e^-4	1	INTRON klu
3R	14341309	3R_14341309_SNP [dm3] 3R_18515587_SNP [dm6]	T	C	4.056e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2L	19084813	2L_19084813_SNP [dm3] 2L_19084813_SNP [dm6]	T	C	4.060e^-4	1	INTRON Lim3
3R	16872971	3R_16872971_SNP [dm3] 3R_21047249_SNP [dm6]	A	C	4.062e^-4	1	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
2L	18377534	2L_18377534_SNP [dm3] 2L_18377534_SNP [dm6]	T	A	4.066e^-4	1	INTRON Fas3
3R	23288431	3R_23288431_SNP [dm3] 3R_27462709_SNP [dm6]	A	T	4.079e^-4	1	INTERGENIC
2R	8365212	2R_8365212_SNP [dm3] 2R_12477707_SNP [dm6]	A	C	4.082e^-4	1	INTRON Dh44-R2
2L	11452018	2L_11452018_SNP [dm3] 2L_11452018_SNP [dm6]	G	A	4.083e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2703029	2L_2703029_DEL [dm3] 2L_2703029_DEL [dm6]	CGGCCATTCATCCGACCCAT...	C	4.088e^-4	1	INTRON CG31690
2R	20115414	2R_20115414_SNP [dm3] 2R_24227891_SNP [dm6]	G	T	4.088e^-4	1	INTRON CG30419
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	4.094e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	19425673	3L_19425673_SNP [dm3] 3L_19432573_SNP [dm6]	A	T	4.096e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	4744737	2L_4744737_SNP [dm3] 2L_4744737_SNP [dm6]	C	T	4.106e^-4	1	INTRON CG15630
2R	16436024	2R_16436024_SNP [dm3] 2R_20548519_SNP [dm6]	C	T	4.109e^-4	1	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2L	3373508	2L_3373508_SNP [dm3] 2L_3373508_SNP [dm6]	C	A	4.111e^-4	1	UPSTREAM CG34394 DOWNSTREAM CG15412 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
2R	6052493	2R_6052493_SNP [dm3] 2R_10164988_SNP [dm6]	G	A	4.113e^-4	1	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10797758	X_10797758_SNP [dm3] X_10903725_SNP [dm6]	A	C	4.119e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	15327287	3R_15327287_INS [dm3] 3R_19501565_INS [dm6]	C	CC	4.121e^-4	1	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19888468	2R_19888468_SNP [dm3] 2R_24000945_SNP [dm6]	A	G	4.133e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8947840	X_8947840_SNP [dm3] X_9053807_SNP [dm6]	A	T	4.136e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
2R	15033953	2R_15033953_SNP [dm3] 2R_19146448_SNP [dm6]	T	G	4.143e^-4	1	INTRON ena	TF binding site mE1_TFBS_inv
X	10901688	X_10901688_INS [dm3] X_11007655_INS [dm6]	T	TGTGTAGGGAATCTT...	4.143e^-4	1	INTRON CG42339
2L	13241928	2L_13241928_DEL [dm3] 2L_13241928_DEL [dm6]	CAATTGAC	C	4.146e^-4	1	DOWNSTREAM CG5945 EXON CR45330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3415405	2L_3415405_SNP [dm3] 2L_3415405_SNP [dm6]	G	T	4.146e^-4	1	INTRON pgant2
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	4.166e^-4	1	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17109339	3R_17109339_SNP [dm3] 3R_21283617_SNP [dm6]	G	T	4.175e^-4	1	NON_SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
X	2996107	X_2996107_SNP [dm3] X_3102074_SNP [dm6]	A	G	4.175e^-4	1	INTRON kirre
3R	22515674	3R_22515674_SNP [dm3] 3R_26689952_SNP [dm6]	A	T	4.175e^-4	1	INTERGENIC
2R	10673029	2R_10673029_SNP [dm3] 2R_14785524_SNP [dm6]	T	G	4.179e^-4	1	INTRON kn
2R	15778970	2R_15778970_SNP [dm3] 2R_19891465_SNP [dm6]	T	G	4.196e^-4	1	INTERGENIC
X	16070141	X_16070141_SNP [dm3] X_16176108_SNP [dm6]	G	A	4.210e^-4	1	INTERGENIC
2L	6771405	2L_6771405_SNP [dm3] 2L_6771405_SNP [dm6]	G	T	4.214e^-4	1	UPSTREAM CG11321 INTRON CG11321
2R	13674601	2R_13674601_SNP [dm3] 2R_17787096_SNP [dm6]	A	G	4.215e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3R	25094496	3R_25094496_SNP [dm3] 3R_29268774_SNP [dm6]	C	T	4.227e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10303208	3R_10303208_SNP [dm3] 3R_14477486_SNP [dm6]	G	A	4.228e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6842051	2L_6842051_SNP [dm3] 2L_6842051_SNP [dm6]	A	T	4.236e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6736715	3L_6736715_SNP [dm3] 3L_6743615_SNP [dm6]	A	G	4.241e^-4	1	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3L	8722258	3L_8722258_SNP [dm3] 3L_8729158_SNP [dm6]	C	G	4.257e^-4	1	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
2R	12046428	2R_12046428_SNP [dm3] 2R_16158923_SNP [dm6]	A	T	4.264e^-4	1	UPSTREAM CG10734 INTRON lbk
2L	2735511	2L_2735511_SNP [dm3] 2L_2735511_SNP [dm6]	A	C	4.282e^-4	1	UPSTREAM CG31689 INTRON CG31689
2L	4713571	2L_4713571_SNP [dm3] 2L_4713571_SNP [dm6]	T	C	4.298e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_inv
3R	16304486	3R_16304486_SNP [dm3] 3R_20478764_SNP [dm6]	T	A	4.304e^-4	1	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10857634	3L_10857634_SNP [dm3] 3L_10864534_SNP [dm6]	C	T	4.318e^-4	1	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15779210	2R_15779210_SNP [dm3] 2R_19891705_SNP [dm6]	A	G	4.322e^-4	1	INTERGENIC
X	12665787	X_12665787_SNP [dm3] X_12771754_SNP [dm6]	T	C	4.323e^-4	1	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
2L	9545737	2L_9545737_SNP [dm3] 2L_9545737_SNP [dm6]	C	T	4.328e^-4	1	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3L	23257294	3L_23257294_SNP [dm3] 3L_23264194_SNP [dm6]	T	A	4.355e^-4	1	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
2R	1041811	2R_1041811_SNP [dm3] 2R_5154306_SNP [dm6]	C	T	4.367e^-4	1	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
X	21458880	X_21458880_SNP [dm3] X_21587853_SNP [dm6]	C	T	4.369e^-4	1	INTERGENIC
2R	17067921	2R_17067921_SNP [dm3] 2R_21180416_SNP [dm6]	G	A	4.373e^-4	1	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	4.374e^-4	1	INTRON Octbeta3R
2R	17315111	2R_17315111_SNP [dm3] 2R_21427606_SNP [dm6]	C	T	4.383e^-4	1	INTRON Sdc
2L	9346239	2L_9346239_SNP [dm3] 2L_9346239_SNP [dm6]	C	G	4.385e^-4	1	INTERGENIC
X	6349557	X_6349557_SNP [dm3] X_6455524_SNP [dm6]	G	T	4.389e^-4	1	INTRON CG42340
2R	20111779	2R_20111779_SNP [dm3] 2R_24224256_SNP [dm6]	A	T	4.390e^-4	1	INTRON CG30419	TF binding site mE1_TFBS_chinmo
2R	15382214	2R_15382214_SNP [dm3] 2R_19494709_SNP [dm6]	G	A	4.391e^-4	1	SYNONYMOUS_CODING hpo DOWNSTREAM Rep	TF binding site mE1_TFBS_cad
2L	10669834	2L_10669834_SNP [dm3] 2L_10669834_SNP [dm6]	C	T	4.396e^-4	1	INTRON CG31871
3R	7847590	3R_7847590_DEL [dm3] 3R_12021868_DEL [dm6]	AA	A	4.403e^-4	1	INTERGENIC
3L	9224977	3L_9224977_SNP [dm3] 3L_9231877_SNP [dm6]	C	T	4.408e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2443273	3L_2443273_SNP [dm3] 3L_2443273_SNP [dm6]	G	T	4.413e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5249712	2L_5249712_SNP [dm3] 2L_5249712_SNP [dm6]	T	C	4.413e^-4	1	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17064422	3L_17064422_SNP [dm3] 3L_17071322_SNP [dm6]	T	A	4.416e^-4	1	UTR_3_PRIME Rbp6 INTRON Rbp6
X	19236873	X_19236873_SNP [dm3] X_19342840_SNP [dm6]	A	G	4.427e^-4	1	SPLICE_SITE_REGION nAChRalpha7 INTRON nAChRalpha7
2L	5449460	2L_5449460_SNP [dm3] 2L_5449460_SNP [dm6]	G	A	4.443e^-4	1	INTERGENIC
3L	15628675	3L_15628675_SNP [dm3] 3L_15635575_SNP [dm6]	G	T	4.447e^-4	1	INTRON comm3
3R	5156880	3R_5156880_SNP [dm3] 3R_9331158_SNP [dm6]	C	T	4.448e^-4	1	SYNONYMOUS_CODING CG16749 UPSTREAM CG12951 DOWNSTREAM CG8866
3L	5648919	3L_5648919_SNP [dm3] 3L_5655819_SNP [dm6]	G	A	4.448e^-4	1	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7888679	2L_7888679_SNP [dm3] 2L_7888679_SNP [dm6]	A	T	4.471e^-4	1	SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	4.479e^-4	1	UTR_5_PRIME Sr-CIV
3L	15046523	3L_15046523_SNP [dm3] 3L_15053423_SNP [dm6]	T	C	4.484e^-4	1	UPSTREAM CG13461 & 1 other DOWNSTREAM CG18649 INTRON Sytbeta
2R	15384745	2R_15384745_SNP [dm3] 2R_19497240_SNP [dm6]	C	T	4.484e^-4	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23267126	3R_23267126_INS [dm3] 3R_27441404_INS [dm6]	T	CGTGTGTGC	4.488e^-4	1	UPSTREAM CG44290 DOWNSTREAM CG43447 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3378511	2L_3378511_SNP [dm3] 2L_3378511_SNP [dm6]	T	G	4.489e^-4	1	UTR_3_PRIME Ptpa
2L	5796457	2L_5796457_SNP [dm3] 2L_5796457_SNP [dm6]	G	A	4.508e^-4	1	INTRON CG9171
2R	10626142	2R_10626142_SNP [dm3] 2R_14738637_SNP [dm6]	T	A	4.514e^-4	1	DOWNSTREAM CG12858 EXON CR43428
2R	4465233	2R_4465233_SNP [dm3] 2R_8577728_SNP [dm6]	T	C	4.522e^-4	1	INTRON CG42326
3L	15047719	3L_15047719_SNP [dm3] 3L_15054619_SNP [dm6]	T	C	4.523e^-4	1	UPSTREAM CG13463 & 1 other INTRON Sytbeta
3L	4000541	3L_4000541_SNP [dm3] 3L_4000541_SNP [dm6]	C	G	4.523e^-4	1	INTERGENIC
X	18572083	X_18572083_SNP [dm3] X_18678050_SNP [dm6]	G	A	4.536e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10319980	2R_10319980_SNP [dm3] 2R_14432475_SNP [dm6]	G	A	4.542e^-4	1	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17811790	3L_17811790_SNP [dm3] 3L_17818690_SNP [dm6]	T	C	4.544e^-4	1	SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
3R	4582520	3R_4582520_SNP [dm3] 3R_8756798_SNP [dm6]	C	G	4.547e^-4	1	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
3R	16797037	3R_16797037_SNP [dm3] 3R_20971315_SNP [dm6]	T	C	4.559e^-4	1	INTRON Atpalpha
2L	16781012	2L_16781012_SNP [dm3] 2L_16781012_SNP [dm6]	G	A	4.563e^-4	1	INTRON Mhc
2L	17861987	2L_17861987_SNP [dm3] 2L_17861987_SNP [dm6]	A	C	4.567e^-4	1	INTRON CadN2
X	21458883	X_21458883_SNP [dm3] X_21587856_SNP [dm6]	T	C	4.568e^-4	1	INTERGENIC
3R	15366073	3R_15366073_SNP [dm3] 3R_19540351_SNP [dm6]	C	T	4.570e^-4	1	INTRON Dys
3R	16034108	3R_16034108_SNP [dm3] 3R_20208386_SNP [dm6]	T	C	4.575e^-4	1	NON_SYNONYMOUS_CODING CG17199 INTRON Nlg4
3R	9356521	3R_9356521_INS [dm3] 3R_13530799_INS [dm6]	C	CTC	4.580e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7138078	2L_7138078_SNP [dm3] 2L_7138078_SNP [dm6]	C	T	4.593e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	15624893	X_15624893_SNP [dm3] X_15730860_SNP [dm6]	A	G	4.594e^-4	1	SYNONYMOUS_CODING CG8184	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16861369	X_16861369_SNP [dm3] X_16967336_SNP [dm6]	C	T	4.602e^-4	1	INTRON CG9086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	2402940	2R_2402940_SNP [dm3] 2R_6515435_SNP [dm6]	A	G	4.610e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2616699	3L_2616699_SNP [dm3] 3L_2616699_SNP [dm6]	G	T	4.632e^-4	1	INTRON Pxn
3R	10257469	3R_10257469_SNP [dm3] 3R_14431747_SNP [dm6]	T	G	4.642e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
3L	10345760	3L_10345760_SNP [dm3] 3L_10352660_SNP [dm6]	C	A	4.653e^-4	1	INTRON CR44327
X	16320436	X_16320436_SNP [dm3] X_16426403_SNP [dm6]	T	G	4.654e^-4	1	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4730258	X_4730258_SNP [dm3] X_4836225_SNP [dm6]	A	G	4.660e^-4	1	INTERGENIC
3L	20604415	3L_20604415_SNP [dm3] 3L_20611315_SNP [dm6]	T	G	4.662e^-4	1	INTRON knrl
3L	5976381	3L_5976381_SNP [dm3] 3L_5983281_SNP [dm6]	G	A	4.666e^-4	1	DOWNSTREAM CR45439 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6589656	2L_6589656_SNP [dm3] 2L_6589656_SNP [dm6]	C	A	4.667e^-4	1	INTRON CG11319
2L	12386657	2L_12386657_SNP [dm3] 2L_12386657_SNP [dm6]	T	C	4.675e^-4	1	INTRON bru-2
2R	19407793	2R_19407793_SNP [dm3] 2R_23520270_SNP [dm6]	C	T	4.679e^-4	1	UTR_3_PRIME RabX1
2R	7972411	2R_7972411_SNP [dm3] 2R_12084906_SNP [dm6]	T	A	4.690e^-4	1	DOWNSTREAM jeb INTERGENIC
2R	13674679	2R_13674679_SNP [dm3] 2R_17787174_SNP [dm6]	T	C	4.694e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3L	731869	3L_731869_SNP [dm3] 3L_731869_SNP [dm6]	A	G	4.699e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	13320450	X_13320450_SNP [dm3] X_13426417_SNP [dm6]	A	G	4.720e^-4	1	INTERGENIC
3R	16872599	3R_16872599_SNP [dm3] 3R_21046877_SNP [dm6]	G	A	4.735e^-4	1	DOWNSTREAM CG7079 INTRON CG31207
3L	3796338	3L_3796338_DEL [dm3] 3L_3796338_DEL [dm6]	TTT	C	4.748e^-4	1	INTRON CG32264
2R	3573442	2R_3573442_SNP [dm3] 2R_7685937_SNP [dm6]	G	C	4.748e^-4	1	INTRON CG1399
3L	9593441	3L_9593441_SNP [dm3] 3L_9600341_SNP [dm6]	G	A	4.749e^-4	1	UTR_3_PRIME CG3222 DOWNSTREAM CG3088
3L	3983618	3L_3983618_SNP [dm3] 3L_3983618_SNP [dm6]	T	C	4.750e^-4	1	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5457052	3R_5457052_SNP [dm3] 3R_9631330_SNP [dm6]	T	A	4.755e^-4	1	UPSTREAM SpdS & 1 other DOWNSTREAM CR45053 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13352383	3L_13352383_SNP [dm3] 3L_13359283_SNP [dm6]	C	T	4.766e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2257313	2L_2257313_SNP [dm3] 2L_2257313_SNP [dm6]	C	T	4.767e^-4	1	DOWNSTREAM CR44787 INTERGENIC
3L	3308347	3L_3308347_SNP [dm3] 3L_3308347_SNP [dm6]	G	T	4.781e^-4	1	INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5949485	3R_5949485_SNP [dm3] 3R_10123763_SNP [dm6]	C	G	4.795e^-4	1	NON_SYNONYMOUS_CODING knk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4615980	3R_4615980_SNP [dm3] 3R_8790258_SNP [dm6]	A	C	4.799e^-4	1	INTRON Pif1B & 1 other
3L	20810164	3L_20810164_SNP [dm3] 3L_20817064_SNP [dm6]	G	C	4.802e^-4	1	UTR_3_PRIME Mst77F UPSTREAM CG3618 INTRON Pka-R1	TF binding site mE1_TFBS_sens
3R	20791311	3R_20791311_SNP [dm3] 3R_24965589_SNP [dm6]	T	C	4.807e^-4	1	INTERGENIC
3R	15694596	3R_15694596_SNP [dm3] 3R_19868874_SNP [dm6]	C	A	4.808e^-4	1	SYNONYMOUS_CODING CG4562	TF binding site mE1_TFBS_cad
3L	3916871	3L_3916871_SNP [dm3] 3L_3916871_SNP [dm6]	A	G	4.809e^-4	1	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4345727	X_4345727_SNP [dm3] X_4451694_SNP [dm6]	G	A	4.816e^-4	1	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_inv
2L	1540042	2L_1540042_SNP [dm3] 2L_1540042_SNP [dm6]	A	G	4.823e^-4	1	INTERGENIC
2L	7088804	2L_7088804_SNP [dm3] 2L_7088804_SNP [dm6]	A	G	4.827e^-4	1	INTERGENIC
2R	20029717	2R_20029717_SNP [dm3] 2R_24142194_SNP [dm6]	T	C	4.835e^-4	1	INTRON Dat
2R	8255695	2R_8255695_SNP [dm3] 2R_12368190_SNP [dm6]	A	T	4.837e^-4	1	SYNONYMOUS_CODING CG33012
X	18381462	X_18381462_SNP [dm3] X_18487429_SNP [dm6]	T	A	4.841e^-4	1	UPSTREAM psh DOWNSTREAM CG15046 INTERGENIC
2L	11860036	2L_11860036_SNP [dm3] 2L_11860036_SNP [dm6]	T	C	4.842e^-4	1	INTRON Pde1c
3R	12551944	3R_12551944_SNP [dm3] 3R_16726222_SNP [dm6]	A	G	4.842e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12352977	2L_12352977_SNP [dm3] 2L_12352977_SNP [dm6]	C	A	4.843e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3R	15339679	3R_15339679_SNP [dm3] 3R_19513957_SNP [dm6]	A	T	4.847e^-4	1	INTRON Dys
2R	13426925	2R_13426925_SNP [dm3] 2R_17539420_SNP [dm6]	A	G	4.859e^-4	1	NON_SYNONYMOUS_CODING CG43370 DOWNSTREAM eIF3-S9	TF binding site mE1_TFBS_cad
3L	23234150	3L_23234150_SNP [dm3] 3L_23241050_SNP [dm6]	A	C	4.864e^-4	1	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
3R	502841	3R_502841_SNP [dm3] 3R_4677119_SNP [dm6]	A	C	4.871e^-4	1	INTRON CG43427
3R	21389061	3R_21389061_SNP [dm3] 3R_25563339_SNP [dm6]	C	T	4.874e^-4	1	INTRON msi
2L	9857360	2L_9857360_SNP [dm3] 2L_9857360_SNP [dm6]	A	T	4.874e^-4	1	INTRON nAChRalpha6
X	3199398	X_3199398_SNP [dm3] X_3305365_SNP [dm6]	G	T	4.877e^-4	1	INTRON dnc	TF binding site mE1_TFBS_sbb
3R	17469919	3R_17469919_SNP [dm3] 3R_21644197_SNP [dm6]	A	T	4.878e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	21458451	X_21458451_SNP [dm3] X_21587424_SNP [dm6]	G	T	4.882e^-4	1	INTERGENIC	transposable element FlyBase
2L	3378508	2L_3378508_SNP [dm3] 2L_3378508_SNP [dm6]	A	T	4.883e^-4	1	UTR_3_PRIME Ptpa
3R	18192318	3R_18192318_SNP [dm3] 3R_22366596_SNP [dm6]	C	G	4.887e^-4	1	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	20168466	2R_20168466_INS [dm3] 2R_24280943_INS [dm6]	G	GTG	4.889e^-4	1	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	11293511	X_11293511_INS [dm3] X_11399478_INS [dm6]	T	TTT	4.897e^-4	1	INTRON dlg1	TF binding site mE1_TFBS_HSA
3L	8140589	3L_8140589_SNP [dm3] 3L_8147489_SNP [dm6]	G	A	4.898e^-4	1	INTRON CG13676
3R	4770859	3R_4770859_INS [dm3] 3R_8945137_INS [dm6]	G	GGTG	4.901e^-4	1	UPSTREAM CG11964 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13950597	2R_13950597_SNP [dm3] 2R_18063092_SNP [dm6]	G	A	4.903e^-4	1	INTRON CG34386
2R	11068891	2R_11068891_INS [dm3] 2R_15181386_INS [dm6]	C	CC	4.910e^-4	1	INTRON igl
2L	5796474	2L_5796474_SNP [dm3] 2L_5796474_SNP [dm6]	T	C	4.913e^-4	1	INTRON CG9171
2R	15381296	2R_15381296_SNP [dm3] 2R_19493791_SNP [dm6]	G	A	4.916e^-4	1	SYNONYMOUS_CODING Rep DOWNSTREAM hpo
3R	25845046	3R_25845046_SNP [dm3] 3R_30019324_SNP [dm6]	C	T	4.922e^-4	1	SYNONYMOUS_CODING Mgat2
3L	4118497	3L_4118497_SNP [dm3] 3L_4118497_SNP [dm6]	G	T	4.924e^-4	1	INTRON Chd64
2L	18354038	2L_18354038_SNP [dm3] 2L_18354038_SNP [dm6]	A	T	4.928e^-4	1	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
2R	16446420	2R_16446420_SNP [dm3] 2R_20558915_SNP [dm6]	G	T	4.928e^-4	1	NON_SYNONYMOUS_CODING lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5308221	3L_5308221_SNP [dm3] 3L_5315121_SNP [dm6]	G	C	4.934e^-4	1	INTERGENIC
2L	6771587	2L_6771587_SNP [dm3] 2L_6771587_SNP [dm6]	T	A	4.935e^-4	1	UPSTREAM CG11321 INTRON CG11321
3L	15046527	3L_15046527_SNP [dm3] 3L_15053427_SNP [dm6]	G	T	4.940e^-4	1	UPSTREAM CG13461 & 1 other DOWNSTREAM CG18649 INTRON Sytbeta
2R	8375436	2R_8375436_SNP [dm3] 2R_12487931_SNP [dm6]	A	G	4.945e^-4	1	UTR_3_PRIME Dh44-R2 & 1 other UPSTREAM CG34234 DOWNSTREAM fdl
2L	6842059	2L_6842059_SNP [dm3] 2L_6842059_SNP [dm6]	T	A	4.945e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	21258065	3L_21258065_INS [dm3] 3L_21264965_INS [dm6]	A	AA	4.945e^-4	1	UTR_3_PRIME Eip78C
3R	26567252	3R_26567252_SNP [dm3] 3R_30741530_SNP [dm6]	T	A	4.946e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4337153	2R_4337153_SNP [dm3] 2R_8449648_SNP [dm6]	C	T	4.955e^-4	1	UTR_3_PRIME Cyp4e1 DOWNSTREAM Mal-A1
3L	23236732	3L_23236732_SNP [dm3] 3L_23243632_SNP [dm6]	G	A	4.956e^-4	1	INTRON nAChRalpha4
3L	5876508	3L_5876508_SNP [dm3] 3L_5883408_SNP [dm6]	C	T	4.959e^-4	1	SYNONYMOUS_CODING CG13287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9857334	2L_9857334_DEL [dm3] 2L_9857334_DEL [dm6]	AT	A	4.967e^-4	1	INTRON nAChRalpha6
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	4.967e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	4588031	2L_4588031_SNP [dm3] 2L_4588031_SNP [dm6]	A	G	4.973e^-4	1	INTRON dp
X	7535069	X_7535069_SNP [dm3] X_7641036_SNP [dm6]	G	T	4.988e^-4	1	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18120294	2L_18120294_SNP [dm3] 2L_18120294_SNP [dm6]	G	A	4.988e^-4	1	INTRON CG5758
3R	5097271	3R_5097271_SNP [dm3] 3R_9271549_SNP [dm6]	T	C	5.000e^-4	1	INTERGENIC
3R	15979250	3R_15979250_SNP [dm3] 3R_20153528_SNP [dm6]	G	T	5.008e^-4	1	INTERGENIC
2R	1741909	2R_1741909_SNP [dm3] 2R_5854404_SNP [dm6]	G	A	5.008e^-4	1	INTRON dpr12
2L	2858580	2L_2858580_SNP [dm3] 2L_2858580_SNP [dm6]	C	A	5.012e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9360929	2L_9360929_SNP [dm3] 2L_9360929_SNP [dm6]	G	C	5.014e^-4	1	INTERGENIC
3R	15366062	3R_15366062_SNP [dm3] 3R_19540340_SNP [dm6]	G	A	5.016e^-4	1	INTRON Dys
3R	14341294	3R_14341294_SNP [dm3] 3R_18515572_SNP [dm6]	T	A	5.017e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	12582863	X_12582863_SNP [dm3] X_12688830_SNP [dm6]	C	G	5.021e^-4	1	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20484700	X_20484700_INS [dm3] X_20613673_INS [dm6]	T	TTTAAGGTTTAGATG...	5.022e^-4	1	INTRON RunxA
X	20484706	X_20484706_SNP [dm3] X_20613679_SNP [dm6]	T	C	5.022e^-4	1	INTRON RunxA
3R	4309404	3R_4309404_SNP [dm3] 3R_8483682_SNP [dm6]	T	A	5.024e^-4	1	INTERGENIC
2R	18578778	2R_18578778_SNP [dm3] 2R_22691273_SNP [dm6]	G	A	5.025e^-4	1	DOWNSTREAM CR44763 EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17519408	2L_17519408_SNP [dm3] 2L_17519408_SNP [dm6]	C	T	5.032e^-4	1	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3215303	X_3215303_SNP [dm3] X_3321270_SNP [dm6]	T	G	5.039e^-4	1	INTRON CR44886 & 1 other
3L	23243874	3L_23243874_SNP [dm3] 3L_23250774_SNP [dm6]	A	T	5.041e^-4	1	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
3L	4085201	3L_4085201_SNP [dm3] 3L_4085201_SNP [dm6]	G	T	5.052e^-4	1	INTRON Gad1
2R	17446137	2R_17446137_SNP [dm3] 2R_21558632_SNP [dm6]	C	T	5.054e^-4	1	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17508736	2L_17508736_SNP [dm3] 2L_17508736_SNP [dm6]	G	C	5.060e^-4	1	SPLICE_SITE_REGION Dhc36C INTRON Dhc36C	TF binding site mE1_TFBS_cad
3R	8901459	3R_8901459_SNP [dm3] 3R_13075737_SNP [dm6]	A	G	5.070e^-4	1	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	1567182	2L_1567182_DEL [dm3] 2L_1567182_DEL [dm6]	AA	A	5.073e^-4	1	INTRON haf
3L	8722422	3L_8722422_SNP [dm3] 3L_8729322_SNP [dm6]	T	G	5.075e^-4	1	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
X	20444644	X_20444644_SNP [dm3] X_20573617_SNP [dm6]	T	A	5.089e^-4	1	UPSTREAM CG42580 INTERGENIC
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	5.089e^-4	1	DOWNSTREAM CG42322 INTRON CG42322
2L	6841314	2L_6841314_SNP [dm3] 2L_6841314_SNP [dm6]	T	A	5.095e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	7137770	2L_7137770_SNP [dm3] 2L_7137770_SNP [dm6]	A	G	5.104e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	20484696	X_20484696_SNP [dm3] X_20613669_SNP [dm6]	T	A	5.105e^-4	1	INTRON RunxA
X	20674472	X_20674472_SNP [dm3] X_20803445_SNP [dm6]	T	C	5.110e^-4	1	UTR_5_PRIME shakB INTRON shakB
3L	12890223	3L_12890223_SNP [dm3] 3L_12897123_SNP [dm6]	T	C	5.111e^-4	1	INTERGENIC
3R	9601026	3R_9601026_SNP [dm3] 3R_13775304_SNP [dm6]	C	T	5.116e^-4	1	SPLICE_SITE_REGION CG9297 SYNONYMOUS_CODING CG9297
2L	21761073	2L_21761073_SNP [dm3] 2L_21761073_SNP [dm6]	G	A	5.121e^-4	1	DOWNSTREAM CG1416 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19548085	X_19548085_SNP [dm3] X_19654052_SNP [dm6]	C	A	5.124e^-4	1	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19732103	2L_19732103_SNP [dm3] 2L_19732103_SNP [dm6]	G	A	5.126e^-4	1	UTR_3_PRIME CG10462 DOWNSTREAM Lar
3L	18481795	3L_18481795_SNP [dm3] 3L_18488695_SNP [dm6]	T	C	5.127e^-4	1	NON_SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
X	5427108	X_5427108_SNP [dm3] X_5533075_SNP [dm6]	C	T	5.127e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5622413	2L_5622413_SNP [dm3] 2L_5622413_SNP [dm6]	A	G	5.131e^-4	1	INTRON Cyp6a16
3R	11799366	3R_11799366_SNP [dm3] 3R_15973644_SNP [dm6]	G	T	5.134e^-4	1	UTR_5_PRIME Hel89B UPSTREAM mor	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	9602365	2R_9602365_SNP [dm3] 2R_13714860_SNP [dm6]	T	C	5.137e^-4	1	SYNONYMOUS_CODING fas
2L	4347739	2L_4347739_SNP [dm3] 2L_4347739_SNP [dm6]	G	A	5.149e^-4	1	UPSTREAM CR44698 EXON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	5340317	X_5340317_SNP [dm3] X_5446284_SNP [dm6]	T	C	5.154e^-4	1	UPSTREAM SPR INTERGENIC
2L	6842058	2L_6842058_SNP [dm3] 2L_6842058_SNP [dm6]	A	G	5.156e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14327348	3R_14327348_SNP [dm3] 3R_18501626_SNP [dm6]	T	C	5.161e^-4	1	INTRON fru
3L	1557720	3L_1557720_SNP [dm3] 3L_1557720_SNP [dm6]	G	T	5.169e^-4	1	SPLICE_SITE_REGION CG12099 UPSTREAM Pex10 INTRON CG12099	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	23519097	3L_23519097_SNP [dm3] 3L_23525997_SNP [dm6]	C	T	5.172e^-4	1	INTERGENIC	transposable element FlyBase
3L	11048493	3L_11048493_SNP [dm3] 3L_11055393_SNP [dm6]	C	G	5.180e^-4	1	UPSTREAM CG7888 INTRON CG7888
3R	22847241	3R_22847241_DEL [dm3] 3R_27021519_DEL [dm6]	TG	T	5.184e^-4	1	UPSTREAM CG6283 DOWNSTREAM CG6277 INTRON RYa-R	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	3862843	X_3862843_SNP [dm3] X_3968810_SNP [dm6]	C	T	5.185e^-4	1	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	16075470	3L_16075470_SNP [dm3] 3L_16082370_SNP [dm6]	C	T	5.189e^-4	1	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
X	20146226	X_20146226_SNP [dm3] X_20275200_SNP [dm6]	C	T	5.189e^-4	1	INTERGENIC
2L	4213974	2L_4213974_SNP [dm3] 2L_4213974_SNP [dm6]	C	T	5.190e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10717587	2L_10717587_SNP [dm3] 2L_10717587_SNP [dm6]	T	C	5.190e^-4	1	INTERGENIC
X	17600021	X_17600021_SNP [dm3] X_17705988_SNP [dm6]	T	C	5.202e^-4	1	UTR_3_PRIME par-6
3L	12169396	3L_12169396_SNP [dm3] 3L_12176296_SNP [dm6]	C	T	5.204e^-4	1	UPSTREAM Rh7 INTERGENIC
2L	10435406	2L_10435406_SNP [dm3] 2L_10435406_SNP [dm6]	T	A	5.207e^-4	1	UTR_5_PRIME CG5337 UPSTREAM holn1	TF binding site mE1_TFBS_cad
2L	6965613	2L_6965613_SNP [dm3] 2L_6965613_SNP [dm6]	G	A	5.214e^-4	1	SYNONYMOUS_CODING Coprox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9360998	2L_9360998_SNP [dm3] 2L_9360998_SNP [dm6]	T	A	5.216e^-4	1	INTERGENIC
2L	10919580	2L_10919580_SNP [dm3] 2L_10919580_SNP [dm6]	A	G	5.217e^-4	1	INTRON dpr2
2L	3377528	2L_3377528_SNP [dm3] 2L_3377528_SNP [dm6]	G	A	5.228e^-4	1	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2L	6842062	2L_6842062_SNP [dm3] 2L_6842062_SNP [dm6]	C	G	5.231e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8466747	2L_8466747_SNP [dm3] 2L_8466747_SNP [dm6]	G	T	5.233e^-4	1	UPSTREAM d DOWNSTREAM fu2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4156634	3R_4156634_SNP [dm3] 3R_8330912_SNP [dm6]	A	C	5.236e^-4	1	INTRON Poxm	TF binding site BDTNP1_TFBS_twi
2R	14439839	2R_14439839_SNP [dm3] 2R_18552334_SNP [dm6]	T	C	5.248e^-4	1	INTERGENIC
X	5044557	X_5044557_SNP [dm3] X_5150524_SNP [dm6]	C	A	5.250e^-4	1	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_twi
3L	8286413	3L_8286413_SNP [dm3] 3L_8293313_SNP [dm6]	A	T	5.259e^-4	1	INTRON CG7201
2R	1140371	2R_1140371_SNP [dm3] 2R_5252866_SNP [dm6]	A	G	5.260e^-4	1	INTERGENIC
3L	6387950	3L_6387950_SNP [dm3] 3L_6394850_SNP [dm6]	C	G	5.270e^-4	1	INTERGENIC
2L	4416217	2L_4416217_SNP [dm3] 2L_4416217_SNP [dm6]	G	A	5.271e^-4	1	INTRON CG15431
2R	3614837	2R_3614837_SNP [dm3] 2R_7727332_SNP [dm6]	C	G	5.273e^-4	1	UPSTREAM CG18812 INTRON CG18812
3L	12071536	3L_12071536_SNP [dm3] 3L_12078436_SNP [dm6]	A	C	5.274e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14018028	X_14018028_SNP [dm3] X_14123995_SNP [dm6]	T	G	5.277e^-4	1	INTERGENIC
X	2996098	X_2996098_SNP [dm3] X_3102065_SNP [dm6]	T	C	5.278e^-4	1	INTRON kirre
X	20484693	X_20484693_SNP [dm3] X_20613666_SNP [dm6]	C	T	5.278e^-4	1	INTRON RunxA
3L	2960566	3L_2960566_SNP [dm3] 3L_2960566_SNP [dm6]	A	T	5.287e^-4	1	UPSTREAM Or63a DOWNSTREAM Shab INTRON CG34025
X	21458871	X_21458871_DEL [dm3] X_21587844_DEL [dm6]	CCGAAC	C	5.289e^-4	1	INTERGENIC
3L	23209992	3L_23209992_SNP [dm3] 3L_23216892_SNP [dm6]	T	A	5.293e^-4	1	INTRON nAChRalpha4
3L	10612352	3L_10612352_SNP [dm3] 3L_10619252_SNP [dm6]	T	C	5.302e^-4	1	INTERGENIC
2L	6842052	2L_6842052_SNP [dm3] 2L_6842052_SNP [dm6]	A	C	5.307e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8466606	2L_8466606_SNP [dm3] 2L_8466606_SNP [dm6]	T	C	5.315e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
2R	9602356	2R_9602356_SNP [dm3] 2R_13714851_SNP [dm6]	A	C	5.317e^-4	1	SYNONYMOUS_CODING fas
3R	10265603	3R_10265603_SNP [dm3] 3R_14439881_SNP [dm6]	C	A	5.320e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_sbb
X	9410249	X_9410249_SNP [dm3] X_9516216_SNP [dm6]	C	T	5.325e^-4	1	INTRON CG32700
3R	7644034	3R_7644034_SNP [dm3] 3R_11818312_SNP [dm6]	G	C	5.327e^-4	1	INTRON glo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2L	6255125	2L_6255125_SNP [dm3] 2L_6255125_SNP [dm6]	C	A	5.332e^-4	1	UPSTREAM CG9486 INTRON Ddr
3L	13175477	3L_13175477_SNP [dm3] 3L_13182377_SNP [dm6]	C	G	5.337e^-4	1	INTERGENIC
2L	5778958	2L_5778958_SNP [dm3] 2L_5778958_SNP [dm6]	T	A	5.347e^-4	1	INTRON CG9171
3L	2626748	3L_2626748_SNP [dm3] 3L_2626748_SNP [dm6]	C	T	5.352e^-4	1	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6120577	2L_6120577_SNP [dm3] 2L_6120577_SNP [dm6]	T	C	5.352e^-4	1	UPSTREAM stai DOWNSTREAM CG31642 INTRON stai
3L	13020423	3L_13020423_DEL [dm3] 3L_13027323_DEL [dm6]	GGCCGA	G	5.358e^-4	1	UPSTREAM Zmynd10 INTERGENIC
2L	19516723	2L_19516723_SNP [dm3] 2L_19516723_SNP [dm6]	G	T	5.362e^-4	1	UTR_5_PRIME CG10186 UPSTREAM CG10186
2L	4595276	2L_4595276_SNP [dm3] 2L_4595276_SNP [dm6]	C	A	5.363e^-4	1	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4730630	X_4730630_SNP [dm3] X_4836597_SNP [dm6]	A	C	5.365e^-4	1	INTERGENIC
2L	7125335	2L_7125335_SNP [dm3] 2L_7125335_SNP [dm6]	C	G	5.369e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5741265	3L_5741265_SNP [dm3] 3L_5748165_SNP [dm6]	C	A	5.378e^-4	1	UTR_3_PRIME sif
3R	7825143	3R_7825143_DEL [dm3] 3R_11999421_DEL [dm6]	TGT	T	5.391e^-4	1	UTR_5_PRIME Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5797335	2L_5797335_SNP [dm3] 2L_5797335_SNP [dm6]	T	C	5.393e^-4	1	INTRON CG9171
2R	1133439	2R_1133439_DEL [dm3] 2R_5245934_DEL [dm6]	TG	T	5.405e^-4	1	INTRON Nipped-A	transposable element FlyBase
X	11657330	X_11657330_SNP [dm3] X_11763297_SNP [dm6]	C	T	5.413e^-4	1	DOWNSTREAM CG9360 INTRON m
2L	10435610	2L_10435610_INS [dm3] 2L_10435610_INS [dm6]	C	CC	5.414e^-4	1	UTR_5_PRIME CG5337 UPSTREAM holn1
2R	1130473	2R_1130473_SNP [dm3] 2R_5242968_SNP [dm6]	G	T	5.415e^-4	1	INTRON Nipped-A	TF binding site mE1_TFBS_HSA
3L	3049887	3L_3049887_SNP [dm3] 3L_3049887_SNP [dm6]	G	A	5.420e^-4	1	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
3R	16922652	3R_16922652_SNP [dm3] 3R_21096930_SNP [dm6]	G	C	5.427e^-4	1	INTRON RhoGAP93B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5814166	2L_5814166_SNP [dm3] 2L_5814166_SNP [dm6]	C	A	5.437e^-4	1	INTERGENIC
2L	9156387	2L_9156387_SNP [dm3] 2L_9156387_SNP [dm6]	T	G	5.448e^-4	1	INTRON CG32982
X	3215026	X_3215026_SNP [dm3] X_3320993_SNP [dm6]	G	A	5.448e^-4	1	INTRON dnc & 1 other
2R	13682234	2R_13682234_SNP [dm3] 2R_17794729_SNP [dm6]	A	T	5.449e^-4	1	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21156109	3L_21156109_SNP [dm3] 3L_21163009_SNP [dm6]	G	A	5.466e^-4	1	INTRON Ac78C
2L	7363785	2L_7363785_SNP [dm3] 2L_7363785_SNP [dm6]	T	A	5.473e^-4	1	INTRON Wnt10
3R	16773576	3R_16773576_SNP [dm3] 3R_20947854_SNP [dm6]	G	A	5.494e^-4	1	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2R	17219150	2R_17219150_SNP [dm3] 2R_21331645_SNP [dm6]	G	A	5.509e^-4	1	DOWNSTREAM snoRNA:Psi18S-841c & 2 others INTRON dom EXON snoRNA:Me28S-A2589c
X	2996079	X_2996079_DEL [dm3] X_3102046_DEL [dm6]	AAA	A	5.512e^-4	1	INTRON kirre
3R	10511463	3R_10511463_SNP [dm3] 3R_14685741_SNP [dm6]	C	G	5.520e^-4	1	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4738177	2L_4738177_SNP [dm3] 2L_4738177_SNP [dm6]	C	A	5.527e^-4	1	INTRON CG15630	TF binding site mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.305e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1612 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	17811196	3L_17811196_SNP [dm3] 3L_17818096_SNP [dm6]	G	A	9.201e^-7	0.846	NON_SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
3L	17811191	3L_17811191_SNP [dm3] 3L_17818091_SNP [dm6]	G	A	1.105e^-6	0.846	SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
2R	15381468	2R_15381468_SNP [dm3] 2R_19493963_SNP [dm6]	T	A	1.353e^-6	0.846	UTR_3_PRIME Rep DOWNSTREAM hpo
2L	6573085	2L_6573085_SNP [dm3] 2L_6573085_SNP [dm6]	A	G	2.578e^-6	1	INTRON CG11319
2L	4513330	2L_4513330_SNP [dm3] 2L_4513330_SNP [dm6]	T	A	3.432e^-6	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7087064	2L_7087064_SNP [dm3] 2L_7087064_SNP [dm6]	A	G	6.201e^-6	1	INTERGENIC
3R	17006842	3R_17006842_SNP [dm3] 3R_21181120_SNP [dm6]	A	T	6.651e^-6	1	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17020888	3R_17020888_SNP [dm3] 3R_21195166_SNP [dm6]	C	A	7.408e^-6	1	INTRON SNF4Agamma
3L	12836994	3L_12836994_SNP [dm3] 3L_12843894_SNP [dm6]	A	T	8.355e^-6	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	12837138	3L_12837138_SNP [dm3] 3L_12844038_SNP [dm6]	C	A	8.795e^-6	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	931623	2L_931623_SNP [dm3] 2L_931623_SNP [dm6]	G	C	9.580e^-6	1	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	5780103	2L_5780103_SNP [dm3] 2L_5780103_SNP [dm6]	C	G	9.983e^-6	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
3L	12837074	3L_12837074_INS [dm3] 3L_12843974_INS [dm6]	T	AATGTA	1.053e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2R	15383714	2R_15383714_SNP [dm3] 2R_19496209_SNP [dm6]	G	A	1.103e^-5	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3006118	3L_3006118_SNP [dm3] 3L_3006118_SNP [dm6]	G	A	1.150e^-5	1	INTRON FMRFaR
2L	17012308	2L_17012308_SNP [dm3] 2L_17012308_SNP [dm6]	C	T	1.204e^-5	1	SYNONYMOUS_CODING CG6304	TF binding site mE1_TFBS_HSA
2L	10660153	2L_10660153_DEL [dm3] 2L_10660153_DEL [dm6]	TAAGT	T	1.270e^-5	1	INTERGENIC
2L	7088396	2L_7088396_SNP [dm3] 2L_7088396_SNP [dm6]	A	T	1.327e^-5	1	INTERGENIC
2R	15383711	2R_15383711_SNP [dm3] 2R_19496206_SNP [dm6]	T	A	1.412e^-5	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3479500	2L_3479500_SNP [dm3] 2L_3479500_SNP [dm6]	G	T	1.481e^-5	1	UTR_3_PRIME Thor	TF binding site BDTNP1_TFBS_dl
3R	23856487	3R_23856487_SNP [dm3] 3R_28030765_SNP [dm6]	C	T	1.594e^-5	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17834431	2R_17834431_SNP [dm3] 2R_21946926_SNP [dm6]	T	C	1.622e^-5	1	DOWNSTREAM Fili INTERGENIC
2R	15377752	2R_15377752_SNP [dm3] 2R_19490247_SNP [dm6]	T	C	1.707e^-5	1	SYNONYMOUS_CODING Oseg6
2L	4417618	2L_4417618_SNP [dm3] 2L_4417618_SNP [dm6]	T	A	1.833e^-5	1	INTRON CG15431	TF binding site mE1_TFBS_chinmo
X	20674472	X_20674472_SNP [dm3] X_20803445_SNP [dm6]	T	C	1.956e^-5	1	UTR_5_PRIME shakB INTRON shakB
2R	15383693	2R_15383693_SNP [dm3] 2R_19496188_SNP [dm6]	C	T	2.168e^-5	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12836907	3L_12836907_SNP [dm3] 3L_12843807_SNP [dm6]	T	C	2.184e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2R	15377749	2R_15377749_SNP [dm3] 2R_19490244_SNP [dm6]	T	A	2.226e^-5	1	SYNONYMOUS_CODING Oseg6
3R	7648546	3R_7648546_INS [dm3] 3R_11822824_INS [dm6]	G	GCTTACA	2.367e^-5	1	UTR_3_PRIME CG6959 UPSTREAM CG6950
3R	14429659	3R_14429659_INS [dm3] 3R_18603937_INS [dm6]	T	TT	2.750e^-5	1	INTRON qin & 1 other
2L	16610431	2L_16610431_SNP [dm3] 2L_16610431_SNP [dm6]	A	G	2.770e^-5	1	DOWNSTREAM CG4631 INTRON CG42389
2L	8558451	2L_8558451_SNP [dm3] 2L_8558451_SNP [dm6]	G	A	2.775e^-5	1	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16610426	2L_16610426_SNP [dm3] 2L_16610426_SNP [dm6]	C	T	2.839e^-5	1	DOWNSTREAM CG4631 INTRON CG42389
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.859e^-5	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	12837043	3L_12837043_SNP [dm3] 3L_12843943_SNP [dm6]	C	G	2.934e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	839225	3L_839225_SNP [dm3] 3L_839225_SNP [dm6]	C	T	3.031e^-5	1	UTR_3_PRIME CG13887 DOWNSTREAM CG13902 INTRON CG13887	TF binding site mE1_TFBS_inv
2L	2685316	2L_2685316_SNP [dm3] 2L_2685316_SNP [dm6]	A	C	3.065e^-5	1	INTRON CG31690
3L	4101331	3L_4101331_SNP [dm3] 3L_4101331_SNP [dm6]	T	A	3.114e^-5	1	UPSTREAM CG14995 INTRON CG14995
2L	20503806	2L_20503806_SNP [dm3] 2L_20503806_SNP [dm6]	G	A	3.132e^-5	1	INTERGENIC
3L	17815024	3L_17815024_SNP [dm3] 3L_17821924_SNP [dm6]	G	A	3.253e^-5	1	SYNONYMOUS_CODING Ir75c
X	4730324	X_4730324_SNP [dm3] X_4836291_SNP [dm6]	G	A	3.260e^-5	1	INTERGENIC
2L	19732070	2L_19732070_SNP [dm3] 2L_19732070_SNP [dm6]	T	A	3.298e^-5	1	DOWNSTREAM CG10462 & 1 other INTERGENIC
2L	7088810	2L_7088810_SNP [dm3] 2L_7088810_SNP [dm6]	C	A	3.304e^-5	1	INTERGENIC
2R	15381077	2R_15381077_SNP [dm3] 2R_19493572_SNP [dm6]	A	T	3.438e^-5	1	SYNONYMOUS_CODING Rep DOWNSTREAM hpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4085851	2L_4085851_SNP [dm3] 2L_4085851_SNP [dm6]	C	T	3.482e^-5	1	UPSTREAM snoRNA:Me28S-C437 INTRON ed
3L	12434956	3L_12434956_SNP [dm3] 3L_12441856_SNP [dm6]	G	A	3.487e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3441779	2L_3441779_SNP [dm3] 2L_3441779_SNP [dm6]	A	G	3.807e^-5	1	INTERGENIC
3R	6246488	3R_6246488_DEL [dm3] 3R_10420766_DEL [dm6]	AA	A	3.843e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5340406	X_5340406_SNP [dm3] X_5446373_SNP [dm6]	A	G	3.871e^-5	1	UPSTREAM SPR INTERGENIC
2L	17004153	2L_17004153_SNP [dm3] 2L_17004153_SNP [dm6]	G	A	4.025e^-5	1	INTERGENIC
2L	2684915	2L_2684915_SNP [dm3] 2L_2684915_SNP [dm6]	C	G	4.034e^-5	1	INTRON CG31690
2R	8261123	2R_8261123_INS [dm3] 2R_12373618_INS [dm6]	T	TCAC	4.045e^-5	1	INTRON CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3533304	3L_3533304_SNP [dm3] 3L_3533304_SNP [dm6]	C	T	4.048e^-5	1	INTRON Eip63E
3L	3049934	3L_3049934_SNP [dm3] 3L_3049934_SNP [dm6]	G	T	4.207e^-5	1	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
3L	15693765	3L_15693765_SNP [dm3] 3L_15700665_SNP [dm6]	A	G	4.210e^-5	1	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	16361554	2L_16361554_SNP [dm3] 2L_16361554_SNP [dm6]	C	T	4.248e^-5	1	INTERGENIC
2R	15383852	2R_15383852_SNP [dm3] 2R_19496347_SNP [dm6]	C	A	4.393e^-5	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7087010	2L_7087010_SNP [dm3] 2L_7087010_SNP [dm6]	A	C	4.407e^-5	1	INTERGENIC
X	18394766	X_18394766_SNP [dm3] X_18500733_SNP [dm6]	G	C	4.412e^-5	1	NON_SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	7363777	2L_7363777_SNP [dm3] 2L_7363777_SNP [dm6]	A	T	4.450e^-5	1	INTRON Wnt10
X	7545557	X_7545557_SNP [dm3] X_7651524_SNP [dm6]	T	A	4.571e^-5	1	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24787842	3R_24787842_SNP [dm3] 3R_28962120_SNP [dm6]	T	A	4.635e^-5	1	INTRON CG14521
2L	4355538	2L_4355538_SNP [dm3] 2L_4355538_SNP [dm6]	A	C	4.790e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18616573	2R_18616573_SNP [dm3] 2R_22729068_SNP [dm6]	T	C	5.004e^-5	1	INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23856601	3R_23856601_SNP [dm3] 3R_28030879_SNP [dm6]	G	A	5.021e^-5	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	839651	3L_839651_SNP [dm3] 3L_839651_SNP [dm6]	T	C	5.035e^-5	1	UTR_3_PRIME CG13887 DOWNSTREAM CG13902
2L	6771405	2L_6771405_SNP [dm3] 2L_6771405_SNP [dm6]	G	T	5.057e^-5	1	UPSTREAM CG11321 INTRON CG11321
2L	6106420	2L_6106420_SNP [dm3] 2L_6106420_SNP [dm6]	A	T	5.063e^-5	1	INTRON stai
2L	7087068	2L_7087068_SNP [dm3] 2L_7087068_SNP [dm6]	G	T	5.069e^-5	1	INTERGENIC
3L	16984600	3L_16984600_SNP [dm3] 3L_16991500_SNP [dm6]	G	T	5.094e^-5	1	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_chinmo
3L	16093381	3L_16093381_SNP [dm3] 3L_16100281_SNP [dm6]	T	A	5.197e^-5	1	UTR_5_PRIME CG5414 DOWNSTREAM ms_3_72Dt
X	5156996	X_5156996_SNP [dm3] X_5262963_SNP [dm6]	G	A	5.207e^-5	1	INTERGENIC
2L	4418320	2L_4418320_SNP [dm3] 2L_4418320_SNP [dm6]	T	A	5.289e^-5	1	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	5.363e^-5	1	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19732103	2L_19732103_SNP [dm3] 2L_19732103_SNP [dm6]	G	A	5.455e^-5	1	UTR_3_PRIME CG10462 DOWNSTREAM Lar
3L	669526	3L_669526_SNP [dm3] 3L_669526_SNP [dm6]	T	G	5.487e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5340396	X_5340396_SNP [dm3] X_5446363_SNP [dm6]	A	G	5.761e^-5	1	UPSTREAM SPR INTERGENIC
3R	5375932	3R_5375932_SNP [dm3] 3R_9550210_SNP [dm6]	A	G	5.772e^-5	1	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10980553	3L_10980553_SNP [dm3] 3L_10987453_SNP [dm6]	A	T	5.785e^-5	1	INTRON klu
X	13320450	X_13320450_SNP [dm3] X_13426417_SNP [dm6]	A	G	5.821e^-5	1	INTERGENIC
3R	14834862	3R_14834862_SNP [dm3] 3R_19009140_SNP [dm6]	C	T	5.908e^-5	1	INTRON gukh
3L	10344333	3L_10344333_SNP [dm3] 3L_10351233_SNP [dm6]	A	T	6.006e^-5	1	INTRON CR44327
2R	8370724	2R_8370724_SNP [dm3] 2R_12483219_SNP [dm6]	A	T	6.016e^-5	1	INTRON Dh44-R2
3R	4582520	3R_4582520_SNP [dm3] 3R_8756798_SNP [dm6]	C	G	6.104e^-5	1	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
3L	10980531	3L_10980531_SNP [dm3] 3L_10987431_SNP [dm6]	G	C	6.107e^-5	1	INTRON klu
X	5340409	X_5340409_DEL [dm3] X_5446376_DEL [dm6]	ACAAG	A	6.370e^-5	1	UPSTREAM SPR INTERGENIC
3L	17815027	3L_17815027_SNP [dm3] 3L_17821927_SNP [dm6]	A	G	6.424e^-5	1	SYNONYMOUS_CODING Ir75c
2R	19878827	2R_19878827_SNP [dm3] 2R_23991304_SNP [dm6]	C	T	6.673e^-5	1	SYNONYMOUS_CODING Pask DOWNSTREAM CG3860
X	14628581	X_14628581_SNP [dm3] X_14734548_SNP [dm6]	T	C	6.698e^-5	1	INTRON NetB
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	6.719e^-5	1	DOWNSTREAM CG42322 INTRON CG42322
2R	1751054	2R_1751054_DEL [dm3] 2R_5863549_DEL [dm6]	GACATACAATGG...	G	6.911e^-5	1	INTERGENIC
3L	8365377	3L_8365377_SNP [dm3] 3L_8372277_SNP [dm6]	T	C	6.911e^-5	1	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8267346	2R_8267346_SNP [dm3] 2R_12379841_SNP [dm6]	T	C	6.984e^-5	1	NON_SYNONYMOUS_CODING CG13155 DOWNSTREAM Cpr49Ab
X	5619040	X_5619040_SNP [dm3] X_5725007_SNP [dm6]	A	G	7.039e^-5	1	INTRON CG32758
3R	9659079	3R_9659079_SNP [dm3] 3R_13833357_SNP [dm6]	A	T	7.213e^-5	1	DOWNSTREAM Nsf2 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5789717	2L_5789717_SNP [dm3] 2L_5789717_SNP [dm6]	C	T	7.224e^-5	1	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15380853	2R_15380853_SNP [dm3] 2R_19493348_SNP [dm6]	A	G	7.463e^-5	1	NON_SYNONYMOUS_CODING Rep DOWNSTREAM hpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8255481	2R_8255481_SNP [dm3] 2R_12367976_SNP [dm6]	C	T	7.475e^-5	1	SYNONYMOUS_CODING CG33012
X	12675868	X_12675868_SNP [dm3] X_12781835_SNP [dm6]	G	A	7.478e^-5	1	INTRON CG32647
2L	2390867	2L_2390867_SNP [dm3] 2L_2390867_SNP [dm6]	G	A	7.478e^-5	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12211278	2L_12211278_SNP [dm3] 2L_12211278_SNP [dm6]	T	C	7.603e^-5	1	INTRON aret
2L	16392747	2L_16392747_SNP [dm3] 2L_16392747_SNP [dm6]	G	C	7.655e^-5	1	INTERGENIC
3R	9603490	3R_9603490_SNP [dm3] 3R_13777768_SNP [dm6]	A	T	7.692e^-5	1	INTRON CG9297	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	13139091	2L_13139091_SNP [dm3] 2L_13139091_SNP [dm6]	C	G	7.711e^-5	1	INTERGENIC
2R	11765293	2R_11765293_SNP [dm3] 2R_15877788_SNP [dm6]	G	A	7.731e^-5	1	INTRON sli
2R	17432463	2R_17432463_SNP [dm3] 2R_21544958_SNP [dm6]	G	C	7.833e^-5	1	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9780660	3L_9780660_SNP [dm3] 3L_9787560_SNP [dm6]	G	A	7.849e^-5	1	DOWNSTREAM Zasp67 INTERGENIC	TF binding site mE1_TFBS_inv
3L	12837093	3L_12837093_SNP [dm3] 3L_12843993_SNP [dm6]	A	T	7.855e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	12837095	3L_12837095_INS [dm3] 3L_12843995_INS [dm6]	T	TAATGTT	7.855e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	7363785	2L_7363785_SNP [dm3] 2L_7363785_SNP [dm6]	T	A	7.911e^-5	1	INTRON Wnt10
3R	15517509	3R_15517509_SNP [dm3] 3R_19691787_SNP [dm6]	A	G	7.911e^-5	1	INTRON Naam
2L	10475260	2L_10475260_SNP [dm3] 2L_10475260_SNP [dm6]	C	T	8.082e^-5	1	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7721784	3L_7721784_SNP [dm3] 3L_7728684_SNP [dm6]	G	T	8.115e^-5	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	7721787	3L_7721787_SNP [dm3] 3L_7728687_SNP [dm6]	A	G	8.115e^-5	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	5572833	2L_5572833_SNP [dm3] 2L_5572833_SNP [dm6]	C	A	8.127e^-5	1	INTERGENIC
2R	19835495	2R_19835495_SNP [dm3] 2R_23947972_SNP [dm6]	A	G	8.129e^-5	1	SYNONYMOUS_CODING CG13565 INTRON CG13565
2R	15378097	2R_15378097_SNP [dm3] 2R_19490592_SNP [dm6]	T	C	8.136e^-5	1	SYNONYMOUS_CODING Oseg6	TF binding site mE1_TFBS_inv
3L	837495	3L_837495_SNP [dm3] 3L_837495_SNP [dm6]	A	G	8.208e^-5	1	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	15382028	2R_15382028_SNP [dm3] 2R_19494523_SNP [dm6]	C	T	8.216e^-5	1	UTR_3_PRIME hpo DOWNSTREAM Rep
2R	15779211	2R_15779211_SNP [dm3] 2R_19891706_SNP [dm6]	G	A	8.242e^-5	1	INTERGENIC
3R	17109464	3R_17109464_SNP [dm3] 3R_21283742_SNP [dm6]	C	A	8.284e^-5	1	INTRON SIFaR & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16406672	2L_16406672_SNP [dm3] 2L_16406672_SNP [dm6]	A	T	8.400e^-5	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16406675	2L_16406675_INS [dm3] 2L_16406675_INS [dm6]	T	TT	8.400e^-5	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17007690	2L_17007690_SNP [dm3] 2L_17007690_SNP [dm6]	C	T	8.537e^-5	1	INTERGENIC
3L	16533617	3L_16533617_SNP [dm3] 3L_16540517_SNP [dm6]	A	G	8.643e^-5	1	INTRON CG43373
2R	18578778	2R_18578778_SNP [dm3] 2R_22691273_SNP [dm6]	G	A	8.667e^-5	1	DOWNSTREAM CR44763 EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13955851	X_13955851_INS [dm3] X_14061818_INS [dm6]	G	GGCTG	8.699e^-5	1	UPSTREAM Ste:CG33236 INTERGENIC
2R	8267492	2R_8267492_SNP [dm3] 2R_12379987_SNP [dm6]	G	A	8.709e^-5	1	SYNONYMOUS_CODING CG13155 DOWNSTREAM Cpr49Ab	TF binding site mE1_TFBS_chinmo
2L	9297416	2L_9297416_SNP [dm3] 2L_9297416_SNP [dm6]	G	A	8.771e^-5	1	UTR_3_PRIME Ggamma30A
3R	10303208	3R_10303208_SNP [dm3] 3R_14477486_SNP [dm6]	G	A	8.798e^-5	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10345760	3L_10345760_SNP [dm3] 3L_10352660_SNP [dm6]	C	A	8.881e^-5	1	INTRON CR44327
3R	17020875	3R_17020875_SNP [dm3] 3R_21195153_SNP [dm6]	A	T	8.921e^-5	1	INTRON SNF4Agamma
2L	4085812	2L_4085812_SNP [dm3] 2L_4085812_SNP [dm6]	G	C	8.955e^-5	1	UPSTREAM snoRNA:Me28S-C437 INTRON ed
2R	13674334	2R_13674334_SNP [dm3] 2R_17786829_SNP [dm6]	G	C	9.058e^-5	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2L	6771359	2L_6771359_SNP [dm3] 2L_6771359_SNP [dm6]	T	A	9.110e^-5	1	UPSTREAM CG11321 INTRON CG11321
3R	23856711	3R_23856711_SNP [dm3] 3R_28030989_SNP [dm6]	G	C	9.143e^-5	1	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20223437	X_20223437_SNP [dm3] X_20352410_SNP [dm6]	T	G	9.146e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	23945762	3L_23945762_SNP [dm3] 3L_23952662_SNP [dm6]	G	A	9.260e^-5	1	INTRON CG40470
2R	15381296	2R_15381296_SNP [dm3] 2R_19493791_SNP [dm6]	G	A	9.369e^-5	1	SYNONYMOUS_CODING Rep DOWNSTREAM hpo
X	10838353	X_10838353_SNP [dm3] X_10944320_SNP [dm6]	T	C	9.391e^-5	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
X	19749819	X_19749819_SNP [dm3] X_19855786_SNP [dm6]	T	C	9.523e^-5	1	SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6771474	2L_6771474_SNP [dm3] 2L_6771474_SNP [dm6]	C	T	9.603e^-5	1	UPSTREAM CG11321 INTRON CG11321
X	11335093	X_11335093_SNP [dm3] X_11441060_SNP [dm6]	C	A	9.608e^-5	1	INTRON Evi5
X	19055737	X_19055737_SNP [dm3] X_19161704_SNP [dm6]	C	T	9.609e^-5	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
2L	7190164	2L_7190164_SNP [dm3] 2L_7190164_SNP [dm6]	A	G	9.611e^-5	1	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
3L	15193115	3L_15193115_SNP [dm3] 3L_15200015_SNP [dm6]	T	A	9.624e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16477887	X_16477887_SNP [dm3] X_16583854_SNP [dm6]	T	A	9.642e^-5	1	INTRON CanA-14F
3R	14071070	3R_14071070_DEL [dm3] 3R_18245348_DEL [dm6]	CGTCCCAATATTTC...	C	1.010e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5340404	X_5340404_SNP [dm3] X_5446371_SNP [dm6]	G	C	1.015e^-4	1	UPSTREAM SPR INTERGENIC
3L	7715586	3L_7715586_SNP [dm3] 3L_7722486_SNP [dm6]	T	G	1.025e^-4	1	SYNONYMOUS_CODING CG7457 INTRON CG32373
X	17600021	X_17600021_SNP [dm3] X_17705988_SNP [dm6]	T	C	1.029e^-4	1	UTR_3_PRIME par-6
2L	17980009	2L_17980009_SNP [dm3] 2L_17980009_SNP [dm6]	G	A	1.043e^-4	1	SYNONYMOUS_CODING btv
2L	16955833	2L_16955833_SNP [dm3] 2L_16955833_SNP [dm6]	T	G	1.043e^-4	1	INTERGENIC
3R	5218712	3R_5218712_INS [dm3] 3R_9392990_INS [dm6]	A	ACATA	1.053e^-4	1	INTRON FER	TF binding site BDTNP1_TFBS_twi
3R	24382496	3R_24382496_SNP [dm3] 3R_28556774_SNP [dm6]	C	G	1.073e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7721793	3L_7721793_SNP [dm3] 3L_7728693_SNP [dm6]	A	T	1.082e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	6771263	2L_6771263_SNP [dm3] 2L_6771263_SNP [dm6]	G	A	1.086e^-4	1	UPSTREAM CG11321 INTRON CG11321
3R	4615980	3R_4615980_SNP [dm3] 3R_8790258_SNP [dm6]	A	C	1.087e^-4	1	INTRON Pif1B & 1 other
2L	19732109	2L_19732109_SNP [dm3] 2L_19732109_SNP [dm6]	A	C	1.097e^-4	1	UTR_3_PRIME CG10462 DOWNSTREAM Lar
2R	18286530	2R_18286530_SNP [dm3] 2R_22399025_SNP [dm6]	A	G	1.103e^-4	1	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	8090911	3R_8090911_SNP [dm3] 3R_12265189_SNP [dm6]	C	T	1.112e^-4	1	INTRON svp	TF binding site mE1_TFBS_chinmo
3R	17089606	3R_17089606_SNP [dm3] 3R_21263884_SNP [dm6]	C	T	1.118e^-4	1	DOWNSTREAM ETHR INTRON ETHR
3R	4927280	3R_4927280_SNP [dm3] 3R_9101558_SNP [dm6]	C	T	1.118e^-4	1	INTRON pum
3R	4611835	3R_4611835_SNP [dm3] 3R_8786113_SNP [dm6]	G	A	1.120e^-4	1	INTRON Pif1B & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18555990	2L_18555990_SNP [dm3] 2L_18555990_SNP [dm6]	A	T	1.120e^-4	1	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
3L	16280330	3L_16280330_INS [dm3] 3L_16287230_INS [dm6]	T	TTCT	1.123e^-4	1	DOWNSTREAM CG13046 INTERGENIC
2L	13139191	2L_13139191_SNP [dm3] 2L_13139191_SNP [dm6]	T	C	1.125e^-4	1	INTERGENIC
2L	13139202	2L_13139202_SNP [dm3] 2L_13139202_SNP [dm6]	G	A	1.125e^-4	1	INTERGENIC
2R	13269452	2R_13269452_SNP [dm3] 2R_17381947_SNP [dm6]	C	A	1.125e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9531809	3R_9531809_SNP [dm3] 3R_13706087_SNP [dm6]	A	C	1.129e^-4	1	UPSTREAM Adgf-D & 1 other INTERGENIC
3R	23856568	3R_23856568_SNP [dm3] 3R_28030846_SNP [dm6]	T	G	1.130e^-4	1	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5974807	2R_5974807_SNP [dm3] 2R_10087302_SNP [dm6]	T	C	1.133e^-4	1	UPSTREAM CG2269 & 1 other INTRON CG2269
2L	6274509	2L_6274509_SNP [dm3] 2L_6274509_SNP [dm6]	G	C	1.134e^-4	1	INTRON Ddr
X	7730170	X_7730170_SNP [dm3] X_7836137_SNP [dm6]	A	G	1.158e^-4	1	INTRON CG1402
3R	8087656	3R_8087656_SNP [dm3] 3R_12261934_SNP [dm6]	A	G	1.159e^-4	1	DOWNSTREAM CG44038 INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
X	8947764	X_8947764_SNP [dm3] X_9053731_SNP [dm6]	C	A	1.172e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
X	20684356	X_20684356_SNP [dm3] X_20813329_SNP [dm6]	T	A	1.183e^-4	1	INTRON shakB
2R	15380915	2R_15380915_SNP [dm3] 2R_19493410_SNP [dm6]	G	A	1.185e^-4	1	SYNONYMOUS_CODING Rep DOWNSTREAM hpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6971567	2L_6971567_SNP [dm3] 2L_6971567_SNP [dm6]	A	G	1.198e^-4	1	UPSTREAM CR43142 INTRON snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16780098	2L_16780098_SNP [dm3] 2L_16780098_SNP [dm6]	C	T	1.203e^-4	1	INTRON Mhc
2L	19732106	2L_19732106_SNP [dm3] 2L_19732106_SNP [dm6]	G	A	1.219e^-4	1	UTR_3_PRIME CG10462 DOWNSTREAM Lar
2R	1002599	2R_1002599_SNP [dm3] 2R_5115094_SNP [dm6]	G	C	1.232e^-4	1	INTERGENIC	transposable element FlyBase
2L	17004152	2L_17004152_SNP [dm3] 2L_17004152_SNP [dm6]	G	A	1.233e^-4	1	INTERGENIC
2R	8259091	2R_8259091_SNP [dm3] 2R_12371586_SNP [dm6]	C	A	1.242e^-4	1	UPSTREAM CG13160 DOWNSTREAM CG33012 INTERGENIC
2L	17980099	2L_17980099_SNP [dm3] 2L_17980099_SNP [dm6]	A	T	1.251e^-4	1	SYNONYMOUS_CODING btv
2L	9338286	2L_9338286_SNP [dm3] 2L_9338286_SNP [dm6]	G	A	1.253e^-4	1	SYNONYMOUS_CODING Eaat1
2L	20440732	2L_20440732_INS [dm3] 2L_20440732_INS [dm6]	T	TCT	1.257e^-4	1	INTRON CG31688
3L	2805669	3L_2805669_SNP [dm3] 3L_2805669_SNP [dm6]	C	T	1.265e^-4	1	INTRON CG43444
X	2459191	X_2459191_SNP [dm3] X_2565158_SNP [dm6]	C	A	1.267e^-4	1	INTRON Pdfr
2L	9312798	2L_9312798_SNP [dm3] 2L_9312798_SNP [dm6]	T	G	1.271e^-4	1	INTERGENIC
2L	3753356	2L_3753356_SNP [dm3] 2L_3753356_SNP [dm6]	G	A	1.272e^-4	1	UTR_3_PRIME CG10019
X	20683558	X_20683558_SNP [dm3] X_20812531_SNP [dm6]	C	T	1.274e^-4	1	INTRON shakB
2L	12991953	2L_12991953_SNP [dm3] 2L_12991953_SNP [dm6]	G	T	1.280e^-4	1	INTERGENIC
2L	5249712	2L_5249712_SNP [dm3] 2L_5249712_SNP [dm6]	T	C	1.289e^-4	1	INTRON tkv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10943532	2L_10943532_SNP [dm3] 2L_10943532_SNP [dm6]	A	G	1.295e^-4	1	UPSTREAM CR44492 INTRON dpr2 EXON CR44493
X	4730572	X_4730572_SNP [dm3] X_4836539_SNP [dm6]	T	A	1.298e^-4	1	INTERGENIC
2L	2025935	2L_2025935_SNP [dm3] 2L_2025935_SNP [dm6]	A	C	1.307e^-4	1	INTRON CG4238
2L	10474464	2L_10474464_SNP [dm3] 2L_10474464_SNP [dm6]	A	C	1.308e^-4	1	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9603487	3R_9603487_SNP [dm3] 3R_13777765_SNP [dm6]	T	C	1.323e^-4	1	INTRON CG9297	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	4513415	2L_4513415_SNP [dm3] 2L_4513415_SNP [dm6]	G	T	1.326e^-4	1	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20678461	X_20678461_SNP [dm3] X_20807434_SNP [dm6]	T	A	1.331e^-4	1	INTRON shakB
2L	16860162	2L_16860162_SNP [dm3] 2L_16860162_SNP [dm6]	C	T	1.336e^-4	1	NON_SYNONYMOUS_CODING CG6012	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2277684	3L_2277684_SNP [dm3] 3L_2277684_SNP [dm6]	T	C	1.343e^-4	1	SYNONYMOUS_CODING yellow-g2
2L	6021663	2L_6021663_SNP [dm3] 2L_6021663_SNP [dm6]	T	C	1.351e^-4	1	SYNONYMOUS_CODING CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15873854	3L_15873854_SNP [dm3] 3L_15880754_SNP [dm6]	A	T	1.352e^-4	1	INTRON pHCl
2L	5572832	2L_5572832_SNP [dm3] 2L_5572832_SNP [dm6]	G	C	1.357e^-4	1	INTERGENIC
2L	7363814	2L_7363814_INS [dm3] 2L_7363814_INS [dm6]	A	ATAGTTTATACTTGAA...	1.358e^-4	1	INTRON Wnt10
2L	16406613	2L_16406613_SNP [dm3] 2L_16406613_SNP [dm6]	G	A	1.361e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6387950	3L_6387950_SNP [dm3] 3L_6394850_SNP [dm6]	C	G	1.361e^-4	1	INTERGENIC
3R	22105750	3R_22105750_SNP [dm3] 3R_26280028_SNP [dm6]	A	C	1.370e^-4	1	INTERGENIC
2L	18785795	2L_18785795_SNP [dm3] 2L_18785795_SNP [dm6]	C	T	1.372e^-4	1	INTRON ham
2R	7558119	2R_7558119_SNP [dm3] 2R_11670614_SNP [dm6]	C	T	1.391e^-4	1	INTRON Roc2 & 1 other
2R	15382091	2R_15382091_SNP [dm3] 2R_19494586_SNP [dm6]	T	A	1.393e^-4	1	UTR_3_PRIME hpo DOWNSTREAM Rep	TF binding site mE1_TFBS_cad
X	20684373	X_20684373_SNP [dm3] X_20813346_SNP [dm6]	C	T	1.396e^-4	1	INTRON shakB
3L	12326203	3L_12326203_SNP [dm3] 3L_12333103_SNP [dm6]	A	G	1.398e^-4	1	INTRON CG32105	TF binding site mE1_TFBS_HSA
X	12717281	X_12717281_DEL [dm3] X_12823248_DEL [dm6]	TTGCCTTATTGCTTTCGCTT...	T	1.402e^-4	1	INTRON Pde9
2L	16860190	2L_16860190_SNP [dm3] 2L_16860190_SNP [dm6]	G	C	1.413e^-4	1	NON_SYNONYMOUS_CODING CG6012	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3673700	2L_3673700_SNP [dm3] 2L_3673700_SNP [dm6]	G	A	1.417e^-4	1	INTRON CG34340
3R	14350134	3R_14350134_SNP [dm3] 3R_18524412_SNP [dm6]	A	T	1.423e^-4	1	INTRON fru
2L	16406614	2L_16406614_SNP [dm3] 2L_16406614_SNP [dm6]	G	T	1.424e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4156471	3R_4156471_SNP [dm3] 3R_8330749_SNP [dm6]	T	C	1.437e^-4	1	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8642921	2R_8642921_SNP [dm3] 2R_12755416_SNP [dm6]	T	C	1.445e^-4	1	UPSTREAM Taz INTRON Taz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	4466963	3R_4466963_DEL [dm3] 3R_8641241_DEL [dm6]	ATA	A	1.479e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	3545253	2L_3545253_SNP [dm3] 2L_3545253_SNP [dm6]	A	T	1.488e^-4	1	START_GAINED drm UTR_5_PRIME drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2329039	2L_2329039_SNP [dm3] 2L_2329039_SNP [dm6]	T	A	1.496e^-4	1	INTRON CG9967 & 1 other
3L	837496	3L_837496_SNP [dm3] 3L_837496_SNP [dm6]	G	A	1.498e^-4	1	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	11773855	2R_11773855_SNP [dm3] 2R_15886350_SNP [dm6]	G	A	1.501e^-4	1	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12521883	3L_12521883_SNP [dm3] 3L_12528783_SNP [dm6]	G	A	1.501e^-4	1	SYNONYMOUS_CODING nst	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	2457128	2L_2457128_SNP [dm3] 2L_2457128_SNP [dm6]	G	A	1.502e^-4	1	INTRON dpp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20554551	3R_20554551_SNP [dm3] 3R_24728829_SNP [dm6]	T	C	1.528e^-4	1	INTRON tok
3L	10410693	3L_10410693_SNP [dm3] 3L_10417593_SNP [dm6]	G	A	1.534e^-4	1	INTERGENIC
2L	17977458	2L_17977458_SNP [dm3] 2L_17977458_SNP [dm6]	G	A	1.535e^-4	1	SYNONYMOUS_CODING btv
3R	12844918	3R_12844918_DEL [dm3] 3R_17019196_DEL [dm6]	GTG	G	1.539e^-4	1	UTR_3_PRIME AdSL INTRON Pxd
2L	12600320	2L_12600320_SNP [dm3] 2L_12600320_SNP [dm6]	A	T	1.544e^-4	1	INTRON nub
X	16416266	X_16416266_SNP [dm3] X_16522233_SNP [dm6]	T	G	1.552e^-4	1	DOWNSTREAM Cnx14D INTRON para
2L	18639967	2L_18639967_SNP [dm3] 2L_18639967_SNP [dm6]	T	A	1.559e^-4	1	INTRON MESR3
X	12363053	X_12363053_DEL [dm3] X_12469020_DEL [dm6]	CA	C	1.561e^-4	1	INTRON CG42258
2L	19732053	2L_19732053_SNP [dm3] 2L_19732053_SNP [dm6]	C	T	1.565e^-4	1	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
2R	8267267	2R_8267267_SNP [dm3] 2R_12379762_SNP [dm6]	C	T	1.565e^-4	1	DOWNSTREAM Cpr49Ab INTRON CG13155
2L	13139218	2L_13139218_SNP [dm3] 2L_13139218_SNP [dm6]	G	T	1.567e^-4	1	INTERGENIC
3L	11542381	3L_11542381_SNP [dm3] 3L_11549281_SNP [dm6]	T	A	1.568e^-4	1	INTRON Mob2
3L	8546441	3L_8546441_SNP [dm3] 3L_8553341_SNP [dm6]	G	C	1.581e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2L	2390909	2L_2390909_SNP [dm3] 2L_2390909_SNP [dm6]	A	C	1.594e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	15327287	3R_15327287_INS [dm3] 3R_19501565_INS [dm6]	C	CC	1.601e^-4	1	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18509218	2L_18509218_SNP [dm3] 2L_18509218_SNP [dm6]	G	T	1.603e^-4	1	UPSTREAM CG10178 INTERGENIC
3R	17020864	3R_17020864_SNP [dm3] 3R_21195142_SNP [dm6]	T	C	1.610e^-4	1	INTRON SNF4Agamma
2R	15384377	2R_15384377_SNP [dm3] 2R_19496872_SNP [dm6]	T	A	1.624e^-4	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12352977	2L_12352977_SNP [dm3] 2L_12352977_SNP [dm6]	C	A	1.628e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
2L	13498968	2L_13498968_SNP [dm3] 2L_13498968_SNP [dm6]	T	G	1.629e^-4	1	SYNONYMOUS_CODING CG42784	TF binding site mE1_TFBS_chinmo
2R	1128130	2R_1128130_SNP [dm3] 2R_5240625_SNP [dm6]	T	C	1.647e^-4	1	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	16410120	2L_16410120_SNP [dm3] 2L_16410120_SNP [dm6]	G	A	1.670e^-4	1	INTRON CG5888
3R	16580300	3R_16580300_SNP [dm3] 3R_20754578_SNP [dm6]	C	T	1.672e^-4	1	DOWNSTREAM CG42322 INTRON CG42322
2R	20790904	2R_20790904_DEL [dm3] 2R_24903381_DEL [dm6]	CTC	C	1.672e^-4	1	UPSTREAM NaCP60E DOWNSTREAM RpL41 INTRON NaCP60E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	4307553	3R_4307553_SNP [dm3] 3R_8481831_SNP [dm6]	C	A	1.678e^-4	1	INTERGENIC
X	3761314	X_3761314_SNP [dm3] X_3867281_SNP [dm6]	G	A	1.686e^-4	1	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
2R	11651833	2R_11651833_SNP [dm3] 2R_15764328_SNP [dm6]	G	T	1.691e^-4	1	NON_SYNONYMOUS_CODING Zasp52 INTRON Zasp52
3L	12837421	3L_12837421_SNP [dm3] 3L_12844321_SNP [dm6]	C	T	1.702e^-4	1	UTR_3_PRIME CG10948
2L	6630793	2L_6630793_SNP [dm3] 2L_6630793_SNP [dm6]	C	T	1.705e^-4	1	INTRON Oatp26F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9297472	2L_9297472_SNP [dm3] 2L_9297472_SNP [dm6]	T	A	1.717e^-4	1	UTR_3_PRIME Ggamma30A
2L	17350091	2L_17350091_SNP [dm3] 2L_17350091_SNP [dm6]	A	T	1.751e^-4	1	INTERGENIC
2R	19835585	2R_19835585_SNP [dm3] 2R_23948062_SNP [dm6]	T	A	1.757e^-4	1	SYNONYMOUS_CODING CG13565 INTRON CG13565
2R	14994122	2R_14994122_SNP [dm3] 2R_19106617_SNP [dm6]	A	C	1.764e^-4	1	INTRON 5-HT1A
2L	7138066	2L_7138066_SNP [dm3] 2L_7138066_SNP [dm6]	G	A	1.766e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18496688	2L_18496688_SNP [dm3] 2L_18496688_SNP [dm6]	A	T	1.773e^-4	1	INTRON kon
2L	5064447	2L_5064447_SNP [dm3] 2L_5064447_SNP [dm6]	C	T	1.779e^-4	1	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5779873	2L_5779873_SNP [dm3] 2L_5779873_SNP [dm6]	A	G	1.790e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	8947840	X_8947840_SNP [dm3] X_9053807_SNP [dm6]	A	T	1.806e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
2L	4402734	2L_4402734_SNP [dm3] 2L_4402734_SNP [dm6]	C	T	1.812e^-4	1	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad
3R	5658184	3R_5658184_SNP [dm3] 3R_9832462_SNP [dm6]	C	G	1.816e^-4	1	INTRON Teh1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1643741	2R_1643741_SNP [dm3] 2R_5756236_SNP [dm6]	T	G	1.817e^-4	1	UTR_3_PRIME l_2_09851 DOWNSTREAM l_2_09851
2L	2390810	2L_2390810_SNP [dm3] 2L_2390810_SNP [dm6]	G	A	1.819e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	15830977	3R_15830977_DEL [dm3] 3R_20005255_DEL [dm6]	GTATGTATT	G	1.819e^-4	1	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5780277	2L_5780277_SNP [dm3] 2L_5780277_SNP [dm6]	A	T	1.820e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2L	6771466	2L_6771466_SNP [dm3] 2L_6771466_SNP [dm6]	A	T	1.825e^-4	1	UPSTREAM CG11321 INTRON CG11321
3R	20232347	3R_20232347_SNP [dm3] 3R_24406625_SNP [dm6]	T	A	1.831e^-4	1	INTRON nAChRalpha1
2L	18504005	2L_18504005_SNP [dm3] 2L_18504005_SNP [dm6]	T	C	1.833e^-4	1	UPSTREAM kon INTERGENIC
2L	17012401	2L_17012401_SNP [dm3] 2L_17012401_SNP [dm6]	A	G	1.840e^-4	1	SYNONYMOUS_CODING CG6304
2L	16406812	2L_16406812_SNP [dm3] 2L_16406812_SNP [dm6]	T	C	1.841e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	1.845e^-4	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6949361	3R_6949361_DEL [dm3] 3R_11123639_DEL [dm6]	AGGTA	A	1.846e^-4	1	INTERGENIC
2L	3249266	2L_3249266_SNP [dm3] 2L_3249266_SNP [dm6]	G	A	1.854e^-4	1	INTERGENIC
3R	19624254	3R_19624254_SNP [dm3] 3R_23798532_SNP [dm6]	T	C	1.855e^-4	1	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2181875	3L_2181875_SNP [dm3] 3L_2181875_SNP [dm6]	C	T	1.858e^-4	1	INTERGENIC
2R	14439839	2R_14439839_SNP [dm3] 2R_18552334_SNP [dm6]	T	C	1.863e^-4	1	INTERGENIC
2L	18612963	2L_18612963_SNP [dm3] 2L_18612963_SNP [dm6]	A	G	1.887e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19918832	X_19918832_INS [dm3] X_20024799_INS [dm6]	G	GCG	1.895e^-4	1	UPSTREAM tRNA:CR32826 INTRON Dop2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23458546	3R_23458546_SNP [dm3] 3R_27632824_SNP [dm6]	G	T	1.902e^-4	1	SYNONYMOUS_CODING Tusp	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5780258	2L_5780258_DEL [dm3] 2L_5780258_DEL [dm6]	AA	A	1.909e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	15525376	X_15525376_DEL [dm3] X_15631343_DEL [dm6]	AAA	A	1.915e^-4	1	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18612986	2L_18612986_SNP [dm3] 2L_18612986_SNP [dm6]	C	T	1.918e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10475280	2L_10475280_SNP [dm3] 2L_10475280_SNP [dm6]	C	A	1.927e^-4	1	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18612953	2L_18612953_SNP [dm3] 2L_18612953_SNP [dm6]	A	C	1.928e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5868744	3L_5868744_DEL [dm3] 3L_5875644_DEL [dm6]	CC	C	1.931e^-4	1	DOWNSTREAM CG18586 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14641087	3R_14641087_SNP [dm3] 3R_18815365_SNP [dm6]	T	C	1.934e^-4	1	INTRON CG18208
3L	10437269	3L_10437269_SNP [dm3] 3L_10444169_SNP [dm6]	C	A	1.936e^-4	1	INTERGENIC
3L	14059948	3L_14059948_SNP [dm3] 3L_14066848_SNP [dm6]	G	A	1.938e^-4	1	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3R	18837426	3R_18837426_SNP [dm3] 3R_23011704_SNP [dm6]	C	A	1.944e^-4	1	UPSTREAM CG6688 DOWNSTREAM CR44225 INTERGENIC
3R	17066436	3R_17066436_SNP [dm3] 3R_21240714_SNP [dm6]	G	T	1.949e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	21945169	3R_21945169_INS [dm3] 3R_26119447_INS [dm6]	T	AA	1.953e^-4	1	INTRON CG31324
3R	14254360	3R_14254360_SNP [dm3] 3R_18428638_SNP [dm6]	T	G	1.966e^-4	1	UTR_3_PRIME fru INTRON fru
2L	9346035	2L_9346035_SNP [dm3] 2L_9346035_SNP [dm6]	C	T	1.967e^-4	1	INTERGENIC
2R	15382214	2R_15382214_SNP [dm3] 2R_19494709_SNP [dm6]	G	A	1.973e^-4	1	SYNONYMOUS_CODING hpo DOWNSTREAM Rep	TF binding site mE1_TFBS_cad
3R	14350130	3R_14350130_SNP [dm3] 3R_18524408_SNP [dm6]	A	G	1.977e^-4	1	INTRON fru
2L	18555989	2L_18555989_SNP [dm3] 2L_18555989_SNP [dm6]	G	A	1.978e^-4	1	INTRON Pde11	TF binding site BDTNP1_TFBS_twi
3R	12844916	3R_12844916_SNP [dm3] 3R_17019194_SNP [dm6]	C	G	1.986e^-4	1	UTR_3_PRIME AdSL INTRON Pxd
2R	1574894	2R_1574894_SNP [dm3] 2R_5687389_SNP [dm6]	G	A	1.987e^-4	1	INTRON scaf
2R	19223819	2R_19223819_SNP [dm3] 2R_23336296_SNP [dm6]	A	C	1.987e^-4	1	INTERGENIC
2L	4375192	2L_4375192_SNP [dm3] 2L_4375192_SNP [dm6]	G	A	1.992e^-4	1	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13139281	2L_13139281_SNP [dm3] 2L_13139281_SNP [dm6]	G	A	1.994e^-4	1	INTERGENIC
2L	7108024	2L_7108024_SNP [dm3] 2L_7108024_SNP [dm6]	C	T	2.000e^-4	1	INTRON Pvf3
3R	20602107	3R_20602107_SNP [dm3] 3R_24776385_SNP [dm6]	T	A	2.000e^-4	1	INTRON CG42331	TF binding site mE1_TFBS_cad
2L	18192913	2L_18192913_SNP [dm3] 2L_18192913_SNP [dm6]	G	C	2.000e^-4	1	INTRON CG42750
3R	12740879	3R_12740879_DEL [dm3] 3R_16915157_DEL [dm6]	CC	G	2.000e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16304486	3R_16304486_SNP [dm3] 3R_20478764_SNP [dm6]	T	A	2.001e^-4	1	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4576844	3R_4576844_SNP [dm3] 3R_8751122_SNP [dm6]	T	A	2.001e^-4	1	UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 INTRON CG8223
3L	20604415	3L_20604415_SNP [dm3] 3L_20611315_SNP [dm6]	T	G	2.007e^-4	1	INTRON knrl
2R	19194972	2R_19194972_SNP [dm3] 2R_23307449_SNP [dm6]	G	A	2.010e^-4	1	INTERGENIC
2L	12339554	2L_12339554_SNP [dm3] 2L_12339554_SNP [dm6]	C	A	2.015e^-4	1	DOWNSTREAM CG31862 INTERGENIC
2R	8268081	2R_8268081_SNP [dm3] 2R_12380576_SNP [dm6]	T	A	2.023e^-4	1	UPSTREAM CG13155 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21889694	X_21889694_SNP [dm3] X_22487858_SNP [dm6]	G	A	2.023e^-4	1	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493
3L	4218593	3L_4218593_SNP [dm3] 3L_4218593_SNP [dm6]	G	A	2.026e^-4	1	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6693714	X_6693714_SNP [dm3] X_6799681_SNP [dm6]	T	A	2.029e^-4	1	INTRON C3G
2L	10558264	2L_10558264_SNP [dm3] 2L_10558264_SNP [dm6]	A	T	2.033e^-4	1	INTRON Trim9	TF binding site mE1_TFBS_inv
2L	2739055	2L_2739055_SNP [dm3] 2L_2739055_SNP [dm6]	G	A	2.043e^-4	1	UPSTREAM Hrs INTRON CG31689
2L	5568433	2L_5568433_SNP [dm3] 2L_5568433_SNP [dm6]	A	T	2.048e^-4	1	INTERGENIC
2L	6274513	2L_6274513_SNP [dm3] 2L_6274513_SNP [dm6]	T	A	2.048e^-4	1	INTRON Ddr
2L	18932415	2L_18932415_SNP [dm3] 2L_18932415_SNP [dm6]	T	A	2.055e^-4	1	INTRON ssp3
X	4653191	X_4653191_SNP [dm3] X_4759158_SNP [dm6]	T	C	2.055e^-4	1	INTERGENIC
X	13701520	X_13701520_SNP [dm3] X_13807487_SNP [dm6]	A	G	2.076e^-4	1	UTR_3_PRIME inaE INTRON inaE
2L	6272264	2L_6272264_SNP [dm3] 2L_6272264_SNP [dm6]	A	G	2.076e^-4	1	DOWNSTREAM CR42735 INTRON Ddr
2R	18586714	2R_18586714_SNP [dm3] 2R_22699209_SNP [dm6]	C	G	2.087e^-4	1	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23651845	3R_23651845_SNP [dm3] 3R_27826123_SNP [dm6]	A	G	2.090e^-4	1	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8335019	2R_8335019_SNP [dm3] 2R_12447514_SNP [dm6]	A	T	2.093e^-4	1	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	4217663	3L_4217663_SNP [dm3] 3L_4217663_SNP [dm6]	C	T	2.093e^-4	1	NON_SYNONYMOUS_CODING CG43367
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	2.094e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	11553443	3R_11553443_SNP [dm3] 3R_15727721_SNP [dm6]	G	C	2.101e^-4	1	INTERGENIC
X	14893012	X_14893012_INS [dm3] X_14998979_INS [dm6]	C	CCTGGTGATGGATC...	2.105e^-4	1	UTR_3_PRIME eag INTRON eag
3L	3101745	3L_3101745_INS [dm3] 3L_3101745_INS [dm6]	T	TT	2.112e^-4	1	INTRON Cht7
3L	3101751	3L_3101751_INS [dm3] 3L_3101751_INS [dm6]	A	ATGTT	2.112e^-4	1	INTRON Cht7
3L	3101754	3L_3101754_INS [dm3] 3L_3101754_INS [dm6]	A	TTAATC	2.112e^-4	1	INTRON Cht7
3R	26400608	3R_26400608_SNP [dm3] 3R_30574886_SNP [dm6]	A	T	2.116e^-4	1	UTR_3_PRIME tmod INTRON tmod
X	9868187	X_9868187_SNP [dm3] X_9974154_SNP [dm6]	A	G	2.126e^-4	1	INTRON CG43386
3R	15740040	3R_15740040_SNP [dm3] 3R_19914318_SNP [dm6]	A	C	2.127e^-4	1	DOWNSTREAM CG42508 & 2 others INTERGENIC
2L	19793831	2L_19793831_SNP [dm3] 2L_19793831_SNP [dm6]	T	C	2.129e^-4	1	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
X	7224127	X_7224127_SNP [dm3] X_7330094_SNP [dm6]	C	T	2.130e^-4	1	SYNONYMOUS_CODING CG18155 INTRON CR44357 & 1 other	TF binding site mE1_TFBS_sens
2R	13426813	2R_13426813_SNP [dm3] 2R_17539308_SNP [dm6]	A	G	2.136e^-4	1	UPSTREAM CG43370 DOWNSTREAM eIF3-S9 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11362548	3L_11362548_SNP [dm3] 3L_11369448_SNP [dm6]	C	A	2.142e^-4	1	INTERGENIC
3R	23291156	3R_23291156_SNP [dm3] 3R_27465434_SNP [dm6]	C	T	2.146e^-4	1	SYNONYMOUS_CODING CG13978
3R	5910431	3R_5910431_SNP [dm3] 3R_10084709_SNP [dm6]	G	A	2.148e^-4	1	INTRON CR45054	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5340317	X_5340317_SNP [dm3] X_5446284_SNP [dm6]	T	C	2.162e^-4	1	UPSTREAM SPR INTERGENIC
2L	18612957	2L_18612957_SNP [dm3] 2L_18612957_SNP [dm6]	T	C	2.164e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15897811	2R_15897811_SNP [dm3] 2R_20010306_SNP [dm6]	C	A	2.165e^-4	1	INTERGENIC
2L	3676379	2L_3676379_SNP [dm3] 2L_3676379_SNP [dm6]	C	T	2.187e^-4	1	INTRON CG34340
2R	10272300	2R_10272300_SNP [dm3] 2R_14384795_SNP [dm6]	A	G	2.191e^-4	1	SYNONYMOUS_CODING Dh44-R1
X	20684870	X_20684870_SNP [dm3] X_20813843_SNP [dm6]	C	T	2.196e^-4	1	INTRON shakB
2L	12549583	2L_12549583_SNP [dm3] 2L_12549583_SNP [dm6]	C	A	2.201e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9680080	3R_9680080_SNP [dm3] 3R_13854358_SNP [dm6]	A	T	2.202e^-4	1	DOWNSTREAM CG14362 INTERGENIC
2R	19876610	2R_19876610_SNP [dm3] 2R_23989087_SNP [dm6]	G	T	2.205e^-4	1	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	14676023	2L_14676023_SNP [dm3] 2L_14676023_SNP [dm6]	A	G	2.207e^-4	1	INTRON osp
3L	15693674	3L_15693674_SNP [dm3] 3L_15700574_SNP [dm6]	C	T	2.210e^-4	1	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	13139173	2L_13139173_SNP [dm3] 2L_13139173_SNP [dm6]	G	T	2.214e^-4	1	INTERGENIC
2L	13139177	2L_13139177_SNP [dm3] 2L_13139177_SNP [dm6]	T	A	2.214e^-4	1	INTERGENIC
3R	23856535	3R_23856535_SNP [dm3] 3R_28030813_SNP [dm6]	G	A	2.218e^-4	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7651345	X_7651345_SNP [dm3] X_7757312_SNP [dm6]	C	T	2.223e^-4	1	INTERGENIC
3L	12837741	3L_12837741_SNP [dm3] 3L_12844641_SNP [dm6]	T	C	2.240e^-4	1	UTR_3_PRIME CG10948
2L	20603455	2L_20603455_DEL [dm3] 2L_20603455_DEL [dm6]	ACTTCTTTAA	A	2.243e^-4	1	DOWNSTREAM CG31677 INTRON CR44909
2L	5780261	2L_5780261_SNP [dm3] 2L_5780261_SNP [dm6]	G	A	2.246e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2L	5780268	2L_5780268_SNP [dm3] 2L_5780268_SNP [dm6]	G	C	2.246e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2L	22713854	2L_22713854_SNP [dm3] 2L_22821122_SNP [dm6]	G	C	2.250e^-4	1	INTERGENIC
2L	10912444	2L_10912444_SNP [dm3] 2L_10912444_SNP [dm6]	T	A	2.263e^-4	1	INTERGENIC
2L	5063324	2L_5063324_SNP [dm3] 2L_5063324_SNP [dm6]	T	G	2.270e^-4	1	INTRON qtc EXON CR43820	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8267474	2R_8267474_SNP [dm3] 2R_12379969_SNP [dm6]	T	C	2.272e^-4	1	SYNONYMOUS_CODING CG13155 DOWNSTREAM Cpr49Ab
2R	8261358	2R_8261358_SNP [dm3] 2R_12373853_SNP [dm6]	A	G	2.274e^-4	1	INTRON CG13160	TF binding site mE1_TFBS_sens
2L	5797038	2L_5797038_SNP [dm3] 2L_5797038_SNP [dm6]	A	G	2.276e^-4	1	INTRON CG9171
3R	11589729	3R_11589729_SNP [dm3] 3R_15764007_SNP [dm6]	A	G	2.279e^-4	1	DOWNSTREAM CG12784 INTERGENIC
3L	23898703	3L_23898703_SNP [dm3] 3L_23905603_SNP [dm6]	G	A	2.284e^-4	1	INTRON CG40470
2L	2390898	2L_2390898_SNP [dm3] 2L_2390898_SNP [dm6]	A	T	2.290e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	12624503	X_12624503_SNP [dm3] X_12730470_SNP [dm6]	T	C	2.291e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
X	17625919	X_17625919_SNP [dm3] X_17731886_SNP [dm6]	G	A	2.295e^-4	1	INTRON CG42684
2L	7088624	2L_7088624_SNP [dm3] 2L_7088624_SNP [dm6]	T	C	2.301e^-4	1	INTERGENIC
3L	12890223	3L_12890223_SNP [dm3] 3L_12897123_SNP [dm6]	T	C	2.302e^-4	1	INTERGENIC
2L	9307388	2L_9307388_SNP [dm3] 2L_9307388_SNP [dm6]	T	G	2.315e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22962981	2L_22962981_SNP [dm3] 2L_23070249_SNP [dm6]	C	T	2.318e^-4	1	EXON CR43242	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16410071	2L_16410071_SNP [dm3] 2L_16410071_SNP [dm6]	A	G	2.319e^-4	1	INTRON CG5888
X	7131808	X_7131808_SNP [dm3] X_7237775_SNP [dm6]	G	A	2.319e^-4	1	SYNONYMOUS_CODING CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17976994	2L_17976994_SNP [dm3] 2L_17976994_SNP [dm6]	T	G	2.334e^-4	1	NON_SYNONYMOUS_CODING btv
2L	12339547	2L_12339547_SNP [dm3] 2L_12339547_SNP [dm6]	G	A	2.340e^-4	1	DOWNSTREAM CG31862 INTERGENIC
2R	18570666	2R_18570666_SNP [dm3] 2R_22683161_SNP [dm6]	C	A	2.344e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
2L	13566163	2L_13566163_SNP [dm3] 2L_13566163_SNP [dm6]	T	A	2.347e^-4	1	INTRON kuz
3R	9744020	3R_9744020_SNP [dm3] 3R_13918298_SNP [dm6]	T	G	2.356e^-4	1	INTERGENIC
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	2.362e^-4	1	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	16962199	3R_16962199_SNP [dm3] 3R_21136477_SNP [dm6]	C	T	2.379e^-4	1	UPSTREAM Ubpy INTRON Ubpy
2L	18612969	2L_18612969_MNP [dm3] 2L_18612969_MNP [dm6]	CGAT	TAGA	2.379e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19827689	2R_19827689_INS [dm3] 2R_23940166_INS [dm6]	T	TTGGTACAAATAT...	2.379e^-4	1	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5643569	2L_5643569_SNP [dm3] 2L_5643569_SNP [dm6]	T	A	2.390e^-4	1	INTRON CG31646
3L	13162244	3L_13162244_SNP [dm3] 3L_13169144_SNP [dm6]	T	A	2.391e^-4	1	INTERGENIC
2R	8267223	2R_8267223_SNP [dm3] 2R_12379718_SNP [dm6]	A	G	2.392e^-4	1	SYNONYMOUS_CODING CG13155 DOWNSTREAM Cpr49Ab
X	2764581	X_2764581_INS [dm3] X_2870548_INS [dm6]	T	TT	2.400e^-4	1	INTRON kirre
3L	18730777	3L_18730777_SNP [dm3] 3L_18737677_SNP [dm6]	T	A	2.402e^-4	1	INTERGENIC
2R	13426832	2R_13426832_SNP [dm3] 2R_17539327_SNP [dm6]	A	C	2.405e^-4	1	NON_SYNONYMOUS_CODING CG43370 DOWNSTREAM eIF3-S9	TF binding site mE1_TFBS_cad
2L	8329952	2L_8329952_SNP [dm3] 2L_8329952_SNP [dm6]	A	G	2.406e^-4	1	INTRON CG14275
X	11327731	X_11327731_SNP [dm3] X_11433698_SNP [dm6]	A	C	2.406e^-4	1	DOWNSTREAM Evi5 INTRON Evi5
2R	8502734	2R_8502734_SNP [dm3] 2R_12615229_SNP [dm6]	C	G	2.407e^-4	1	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
3L	10972275	3L_10972275_SNP [dm3] 3L_10979175_SNP [dm6]	G	C	2.408e^-4	1	UPSTREAM CR45745 INTERGENIC
3L	10549950	3L_10549950_SNP [dm3] 3L_10556850_SNP [dm6]	G	T	2.426e^-4	1	DOWNSTREAM CG6527 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	2626748	3L_2626748_SNP [dm3] 3L_2626748_SNP [dm6]	C	T	2.429e^-4	1	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12046060	2R_12046060_SNP [dm3] 2R_16158555_SNP [dm6]	T	C	2.440e^-4	1	SYNONYMOUS_CODING CG10734 INTRON lbk
2R	15384387	2R_15384387_SNP [dm3] 2R_19496882_SNP [dm6]	G	A	2.442e^-4	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13674200	2R_13674200_SNP [dm3] 2R_17786695_SNP [dm6]	A	T	2.455e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3L	10282166	3L_10282166_SNP [dm3] 3L_10289066_SNP [dm6]	T	A	2.471e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14161279	X_14161279_INS [dm3] X_14267246_INS [dm6]	T	TTT	2.479e^-4	1	UPSTREAM CG13404 INTRON na
3R	25323016	3R_25323016_SNP [dm3] 3R_29497294_SNP [dm6]	T	C	2.479e^-4	1	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	2.480e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	11774552	2R_11774552_SNP [dm3] 2R_15887047_SNP [dm6]	C	T	2.496e^-4	1	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	9593739	3R_9593739_SNP [dm3] 3R_13768017_SNP [dm6]	T	G	2.501e^-4	1	DOWNSTREAM CG9312 INTRON Cht5
2R	18935001	2R_18935001_SNP [dm3] 2R_23047478_SNP [dm6]	A	T	2.504e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	9028023	3R_9028023_SNP [dm3] 3R_13202301_SNP [dm6]	T	C	2.507e^-4	1	INTERGENIC
2L	9307391	2L_9307391_SNP [dm3] 2L_9307391_SNP [dm6]	C	A	2.510e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	2.513e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	13977716	3L_13977716_SNP [dm3] 3L_13984616_SNP [dm6]	G	A	2.536e^-4	1	INTRON CG17364
3L	10280978	3L_10280978_SNP [dm3] 3L_10287878_SNP [dm6]	G	A	2.541e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4414478	2L_4414478_SNP [dm3] 2L_4414478_SNP [dm6]	C	T	2.553e^-4	1	INTRON CG15431
2L	17780234	2L_17780234_SNP [dm3] 2L_17780234_SNP [dm6]	A	T	2.555e^-4	1	INTERGENIC
2L	18508984	2L_18508984_SNP [dm3] 2L_18508984_SNP [dm6]	T	C	2.564e^-4	1	UPSTREAM CG10178 INTERGENIC
3L	10718684	3L_10718684_SNP [dm3] 3L_10725584_SNP [dm6]	C	T	2.565e^-4	1	INTERGENIC
2L	12259965	2L_12259965_SNP [dm3] 2L_12259965_SNP [dm6]	G	A	2.574e^-4	1	INTRON aret
2L	6106431	2L_6106431_SNP [dm3] 2L_6106431_SNP [dm6]	T	A	2.576e^-4	1	INTRON stai
2L	18640053	2L_18640053_SNP [dm3] 2L_18640053_SNP [dm6]	C	T	2.578e^-4	1	INTRON MESR3
X	17187664	X_17187664_SNP [dm3] X_17293631_SNP [dm6]	A	T	2.579e^-4	1	INTRON CG5445 & 1 other
X	3214988	X_3214988_DEL [dm3] X_3320955_DEL [dm6]	ATAT	A	2.580e^-4	1	INTRON dnc & 1 other
3R	14429580	3R_14429580_SNP [dm3] 3R_18603858_SNP [dm6]	A	G	2.582e^-4	1	INTRON qin & 1 other
2R	18616584	2R_18616584_SNP [dm3] 2R_22729079_SNP [dm6]	A	T	2.584e^-4	1	INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10282833	3L_10282833_SNP [dm3] 3L_10289733_SNP [dm6]	C	G	2.584e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14835032	3R_14835032_SNP [dm3] 3R_19009310_SNP [dm6]	C	T	2.594e^-4	1	INTRON gukh
3R	17003045	3R_17003045_INS [dm3] 3R_21177323_INS [dm6]	T	TAGCA	2.602e^-4	1	INTRON SNF4Agamma
3R	10242056	3R_10242056_SNP [dm3] 3R_14416334_SNP [dm6]	G	T	2.612e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4983699	3L_4983699_SNP [dm3] 3L_4983699_SNP [dm6]	A	G	2.612e^-4	1	INTRON Con
2R	18935521	2R_18935521_SNP [dm3] 2R_23047998_SNP [dm6]	C	T	2.622e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19491821	2R_19491821_SNP [dm3] 2R_23604298_SNP [dm6]	T	A	2.625e^-4	1	DOWNSTREAM CG5398 INTRON CG17664	TF binding site mE1_TFBS_cad
3L	13162251	3L_13162251_INS [dm3] 3L_13169151_INS [dm6]	T	TGTGGTTTGTTTTCCC...	2.629e^-4	1	INTERGENIC
2R	19827402	2R_19827402_SNP [dm3] 2R_23939879_SNP [dm6]	T	C	2.645e^-4	1	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4546464	2R_4546464_SNP [dm3] 2R_8658959_SNP [dm6]	A	G	2.665e^-4	1	INTRON ptc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2493141	3L_2493141_SNP [dm3] 3L_2493141_SNP [dm6]	T	C	2.669e^-4	1	DOWNSTREAM CG1146 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2390848	2L_2390848_SNP [dm3] 2L_2390848_SNP [dm6]	A	T	2.671e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	6947810	3R_6947810_SNP [dm3] 3R_11122088_SNP [dm6]	G	A	2.671e^-4	1	INTERGENIC
2L	13498794	2L_13498794_SNP [dm3] 2L_13498794_SNP [dm6]	C	T	2.676e^-4	1	SYNONYMOUS_CODING CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11068003	3L_11068003_SNP [dm3] 3L_11074903_SNP [dm6]	C	T	2.686e^-4	1	NON_SYNONYMOUS_CODING CG7839 UPSTREAM l_3_01239
3R	14924513	3R_14924513_SNP [dm3] 3R_19098791_SNP [dm6]	T	C	2.697e^-4	1	INTRON CG6040
2L	9346101	2L_9346101_SNP [dm3] 2L_9346101_SNP [dm6]	T	A	2.717e^-4	1	INTERGENIC
2R	20209713	2R_20209713_SNP [dm3] 2R_24322190_SNP [dm6]	A	G	2.720e^-4	1	INTERGENIC
3R	4156634	3R_4156634_SNP [dm3] 3R_8330912_SNP [dm6]	A	C	2.720e^-4	1	INTRON Poxm	TF binding site BDTNP1_TFBS_twi
3R	16720898	3R_16720898_SNP [dm3] 3R_20895176_SNP [dm6]	A	G	2.730e^-4	1	UTR_3_PRIME CG10830
3R	17109339	3R_17109339_SNP [dm3] 3R_21283617_SNP [dm6]	G	T	2.733e^-4	1	NON_SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
2R	1130506	2R_1130506_SNP [dm3] 2R_5243001_SNP [dm6]	T	C	2.746e^-4	1	INTRON Nipped-A	TF binding site mE1_TFBS_HSA
3R	10291931	3R_10291931_SNP [dm3] 3R_14466209_SNP [dm6]	C	A	2.752e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14059981	3L_14059981_SNP [dm3] 3L_14066881_SNP [dm6]	C	A	2.755e^-4	1	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
2R	19888434	2R_19888434_SNP [dm3] 2R_24000911_SNP [dm6]	T	G	2.756e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12046428	2R_12046428_SNP [dm3] 2R_16158923_SNP [dm6]	A	T	2.758e^-4	1	UPSTREAM CG10734 INTRON lbk
2R	14634524	2R_14634524_SNP [dm3] 2R_18747019_SNP [dm6]	T	C	2.759e^-4	1	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
2L	12581697	2L_12581697_SNP [dm3] 2L_12581697_SNP [dm6]	T	C	2.767e^-4	1	UPSTREAM CR44595 EXON CR44596
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	2.769e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	5136146	3L_5136146_SNP [dm3] 3L_5143046_SNP [dm6]	T	C	2.770e^-4	1	INTRON CG4623
2R	14572706	2R_14572706_SNP [dm3] 2R_18685201_SNP [dm6]	C	T	2.773e^-4	1	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8740476	3L_8740476_SNP [dm3] 3L_8747376_SNP [dm6]	C	T	2.782e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	6397118	2R_6397118_SNP [dm3] 2R_10509613_SNP [dm6]	A	T	2.784e^-4	1	DOWNSTREAM lola INTRON lola
2L	3165595	2L_3165595_SNP [dm3] 2L_3165595_SNP [dm6]	G	A	2.787e^-4	1	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7651342	X_7651342_SNP [dm3] X_7757309_SNP [dm6]	T	C	2.799e^-4	1	INTERGENIC
X	2996107	X_2996107_SNP [dm3] X_3102074_SNP [dm6]	A	G	2.802e^-4	1	INTRON kirre
3R	17089085	3R_17089085_SNP [dm3] 3R_21263363_SNP [dm6]	G	A	2.822e^-4	1	UTR_3_PRIME ETHR INTRON ETHR	TF binding site mE1_TFBS_cad
2R	20114983	2R_20114983_SNP [dm3] 2R_24227460_SNP [dm6]	C	G	2.824e^-4	1	INTRON CG30419
3L	917525	3L_917525_SNP [dm3] 3L_917525_SNP [dm6]	A	T	2.830e^-4	1	INTRON Glut1
3R	14081436	3R_14081436_SNP [dm3] 3R_18255714_SNP [dm6]	C	T	2.831e^-4	1	SYNONYMOUS_CODING moi UTR_5_PRIME Tgs1 UPSTREAM Rpb4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4812164	X_4812164_SNP [dm3] X_4918131_SNP [dm6]	G	A	2.843e^-4	1	SYNONYMOUS_CODING CG4041 UPSTREAM CG6903	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4415181	2L_4415181_SNP [dm3] 2L_4415181_SNP [dm6]	G	T	2.851e^-4	1	INTRON CG15431
3L	839306	3L_839306_SNP [dm3] 3L_839306_SNP [dm6]	G	A	2.855e^-4	1	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
3L	4118497	3L_4118497_SNP [dm3] 3L_4118497_SNP [dm6]	G	T	2.866e^-4	1	INTRON Chd64
2L	7211255	2L_7211255_SNP [dm3] 2L_7211255_SNP [dm6]	C	A	2.870e^-4	1	INTRON CG13784
2L	18612860	2L_18612860_SNP [dm3] 2L_18612860_SNP [dm6]	T	A	2.870e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	18612861	2L_18612861_INS [dm3] 2L_18612861_INS [dm6]	A	AT	2.870e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	6970539	2L_6970539_SNP [dm3] 2L_6970539_SNP [dm6]	C	A	2.878e^-4	1	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8260665	2R_8260665_SNP [dm3] 2R_12373160_SNP [dm6]	C	G	2.887e^-4	1	INTRON CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2996094	X_2996094_SNP [dm3] X_3102061_SNP [dm6]	G	A	2.891e^-4	1	INTRON kirre
3L	8722380	3L_8722380_SNP [dm3] 3L_8729280_SNP [dm6]	A	C	2.893e^-4	1	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
3R	21388977	3R_21388977_SNP [dm3] 3R_25563255_SNP [dm6]	C	T	2.894e^-4	1	INTRON msi
3R	10242832	3R_10242832_SNP [dm3] 3R_14417110_SNP [dm6]	A	T	2.894e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	2.895e^-4	1	INTRON CG31690
2L	17906967	2L_17906967_SNP [dm3] 2L_17906967_SNP [dm6]	T	A	2.900e^-4	1	INTERGENIC
2L	4455005	2L_4455005_SNP [dm3] 2L_4455005_SNP [dm6]	T	G	2.918e^-4	1	UPSTREAM CG15440 DOWNSTREAM Gs1l INTRON CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25335503	3R_25335503_SNP [dm3] 3R_29509781_SNP [dm6]	C	A	2.918e^-4	1	INTERGENIC
2R	3573441	2R_3573441_SNP [dm3] 2R_7685936_SNP [dm6]	A	C	2.923e^-4	1	INTRON CG1399
3R	23452763	3R_23452763_SNP [dm3] 3R_27627041_SNP [dm6]	G	T	2.933e^-4	1	INTRON Tusp
3R	12740857	3R_12740857_SNP [dm3] 3R_16915135_SNP [dm6]	A	G	2.934e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20221129	X_20221129_SNP [dm3] X_20350102_SNP [dm6]	C	A	2.937e^-4	1	INTERGENIC
3R	9531800	3R_9531800_SNP [dm3] 3R_13706078_SNP [dm6]	A	G	2.941e^-4	1	UPSTREAM Adgf-D & 1 other INTERGENIC
2R	18606931	2R_18606931_SNP [dm3] 2R_22719426_SNP [dm6]	C	T	2.941e^-4	1	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1133439	2R_1133439_DEL [dm3] 2R_5245934_DEL [dm6]	TG	T	2.945e^-4	1	INTRON Nipped-A	transposable element FlyBase
X	13487080	X_13487080_SNP [dm3] X_13593047_SNP [dm6]	C	T	2.948e^-4	1	UTR_3_PRIME Tango13 DOWNSTREAM up
2L	4259887	2L_4259887_SNP [dm3] 2L_4259887_SNP [dm6]	A	G	2.956e^-4	1	DOWNSTREAM CR44080 INTERGENIC
X	9224651	X_9224651_INS [dm3] X_9330618_INS [dm6]	C	CATTCCTCAATTAC...	2.957e^-4	1	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3R	16992054	3R_16992054_SNP [dm3] 3R_21166332_SNP [dm6]	C	G	2.960e^-4	1	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
2L	2738000	2L_2738000_SNP [dm3] 2L_2738000_SNP [dm6]	T	C	2.964e^-4	1	DOWNSTREAM mir-4914 INTRON CG31689
2L	5789417	2L_5789417_SNP [dm3] 2L_5789417_SNP [dm6]	A	G	2.974e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12908854	2L_12908854_SNP [dm3] 2L_12908854_SNP [dm6]	T	C	3.025e^-4	1	INTERGENIC
3L	8740468	3L_8740468_SNP [dm3] 3L_8747368_SNP [dm6]	A	T	3.030e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	2390833	2L_2390833_SNP [dm3] 2L_2390833_SNP [dm6]	C	T	3.032e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2390850	2L_2390850_SNP [dm3] 2L_2390850_SNP [dm6]	C	T	3.032e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2R	8267161	2R_8267161_SNP [dm3] 2R_12379656_SNP [dm6]	C	A	3.039e^-4	1	NON_SYNONYMOUS_CODING CG13155 DOWNSTREAM Cpr49Ab
3R	5433972	3R_5433972_SNP [dm3] 3R_9608250_SNP [dm6]	G	T	3.042e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	3.047e^-4	1	INTERGENIC
2L	5764099	2L_5764099_SNP [dm3] 2L_5764099_SNP [dm6]	C	T	3.050e^-4	1	SYNONYMOUS_CODING obst-E INTRON obst-E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17625937	X_17625937_SNP [dm3] X_17731904_SNP [dm6]	C	G	3.060e^-4	1	INTRON CG42684
3L	12837097	3L_12837097_SNP [dm3] 3L_12843997_SNP [dm6]	C	G	3.092e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	5904495	2L_5904495_DEL [dm3] 2L_5904495_DEL [dm6]	AGTGGAAAGATAACGAAAAA...	A	3.106e^-4	1	DOWNSTREAM CR43808 INTRON CG9021
X	10500322	X_10500322_DEL [dm3] X_10606289_DEL [dm6]	AGCAAGTTTTCGAATTTTCA...	A	3.108e^-4	1	INTRON CG43347
2L	12600870	2L_12600870_SNP [dm3] 2L_12600870_SNP [dm6]	C	G	3.110e^-4	1	INTRON nub
X	6700645	X_6700645_SNP [dm3] X_6806612_SNP [dm6]	C	T	3.118e^-4	1	SPLICE_SITE_REGION pod1 INTRON pod1
X	6701510	X_6701510_SNP [dm3] X_6807477_SNP [dm6]	T	A	3.118e^-4	1	INTRON pod1
3R	10544434	3R_10544434_SNP [dm3] 3R_14718712_SNP [dm6]	A	T	3.122e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13269415	2R_13269415_SNP [dm3] 2R_17381910_SNP [dm6]	A	C	3.130e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	6680235	X_6680235_SNP [dm3] X_6786202_SNP [dm6]	T	G	3.132e^-4	1	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
2R	17215904	2R_17215904_SNP [dm3] 2R_21328399_SNP [dm6]	G	C	3.132e^-4	1	DOWNSTREAM snoRNA:Me28S-A2589b INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8494394	X_8494394_SNP [dm3] X_8600361_SNP [dm6]	T	C	3.141e^-4	1	SYNONYMOUS_CODING Crag	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20168466	2R_20168466_INS [dm3] 2R_24280943_INS [dm6]	G	GTG	3.146e^-4	1	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8365383	3L_8365383_SNP [dm3] 3L_8372283_SNP [dm6]	C	T	3.146e^-4	1	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8090059	3R_8090059_SNP [dm3] 3R_12264337_SNP [dm6]	C	T	3.148e^-4	1	INTRON svp
3L	10980554	3L_10980554_SNP [dm3] 3L_10987454_SNP [dm6]	A	T	3.152e^-4	1	INTRON klu
X	16848553	X_16848553_INS [dm3] X_16954520_INS [dm6]	C	TGACTTAAGA	3.154e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18223255	X_18223255_SNP [dm3] X_18329222_SNP [dm6]	C	T	3.164e^-4	1	SYNONYMOUS_CODING CG6123
2R	12046439	2R_12046439_SNP [dm3] 2R_16158934_SNP [dm6]	C	T	3.170e^-4	1	UPSTREAM CG10734 INTRON lbk
2L	10479950	2L_10479950_SNP [dm3] 2L_10479950_SNP [dm6]	G	A	3.171e^-4	1	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3L	6879671	3L_6879671_INS [dm3] 3L_6886571_INS [dm6]	T	TCTGTCTACTTCTGAGCAAT...	3.171e^-4	1	INTERGENIC
2L	17979751	2L_17979751_SNP [dm3] 2L_17979751_SNP [dm6]	C	T	3.184e^-4	1	NON_SYNONYMOUS_CODING btv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10628293	X_10628293_SNP [dm3] X_10734260_SNP [dm6]	G	C	3.190e^-4	1	INTRON CG32676
2L	16831867	2L_16831867_SNP [dm3] 2L_16831867_SNP [dm6]	C	A	3.197e^-4	1	UTR_3_PRIME CG31739 DOWNSTREAM CG13282 & 1 other
3R	24383384	3R_24383384_SNP [dm3] 3R_28557662_SNP [dm6]	G	A	3.201e^-4	1	INTERGENIC
2L	16878414	2L_16878414_SNP [dm3] 2L_16878414_SNP [dm6]	T	C	3.207e^-4	1	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9868363	X_9868363_SNP [dm3] X_9974330_SNP [dm6]	A	T	3.209e^-4	1	INTRON CG43386
3R	24776448	3R_24776448_SNP [dm3] 3R_28950726_SNP [dm6]	A	G	3.210e^-4	1	INTRON CG14521	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13343792	3R_13343792_SNP [dm3] 3R_17518070_SNP [dm6]	A	C	3.222e^-4	1	DOWNSTREAM CR44349 INTERGENIC
X	5340403	X_5340403_SNP [dm3] X_5446370_SNP [dm6]	A	C	3.228e^-4	1	UPSTREAM SPR INTERGENIC
3L	16556337	3L_16556337_DEL [dm3] 3L_16563237_DEL [dm6]	ATGA	A	3.240e^-4	1	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	5384338	3R_5384338_SNP [dm3] 3R_9558616_SNP [dm6]	G	A	3.245e^-4	1	SYNONYMOUS_CODING AP-1mu DOWNSTREAM CG8199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	11860036	2L_11860036_SNP [dm3] 2L_11860036_SNP [dm6]	T	C	3.255e^-4	1	INTRON Pde1c
X	20221103	X_20221103_SNP [dm3] X_20350076_SNP [dm6]	T	A	3.257e^-4	1	INTERGENIC
2R	1782368	2R_1782368_SNP [dm3] 2R_5894863_SNP [dm6]	G	T	3.257e^-4	1	INTRON CG43366
3R	16570028	3R_16570028_SNP [dm3] 3R_20744306_SNP [dm6]	G	T	3.262e^-4	1	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad
2L	4520411	2L_4520411_SNP [dm3] 2L_4520411_SNP [dm6]	T	C	3.263e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12741188	3R_12741188_SNP [dm3] 3R_16915466_SNP [dm6]	G	A	3.264e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6771681	2L_6771681_SNP [dm3] 2L_6771681_SNP [dm6]	T	C	3.289e^-4	1	UPSTREAM CG11321 INTRON CG11321
3R	20527271	3R_20527271_SNP [dm3] 3R_24701549_SNP [dm6]	A	G	3.290e^-4	1	INTRON slo
2L	6021728	2L_6021728_SNP [dm3] 2L_6021728_SNP [dm6]	A	C	3.296e^-4	1	DOWNSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10562475	2L_10562475_SNP [dm3] 2L_10562475_SNP [dm6]	T	C	3.296e^-4	1	INTRON Trim9
2R	5188789	2R_5188789_SNP [dm3] 2R_9301284_SNP [dm6]	A	T	3.298e^-4	1	UTR_3_PRIME Drep-2
2L	18012454	2L_18012454_SNP [dm3] 2L_18012454_SNP [dm6]	T	G	3.304e^-4	1	UTR_5_PRIME rdo UPSTREAM elfless
3L	10689041	3L_10689041_SNP [dm3] 3L_10695941_SNP [dm6]	C	G	3.329e^-4	1	INTRON NijA
2L	10475423	2L_10475423_SNP [dm3] 2L_10475423_SNP [dm6]	T	C	3.337e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10240173	3R_10240173_SNP [dm3] 3R_14414451_SNP [dm6]	T	C	3.357e^-4	1	INTRON cv-c
3R	14329380	3R_14329380_SNP [dm3] 3R_18503658_SNP [dm6]	G	A	3.357e^-4	1	INTRON fru
2L	3674204	2L_3674204_SNP [dm3] 2L_3674204_SNP [dm6]	C	T	3.360e^-4	1	INTRON CG34340
2L	12339560	2L_12339560_DEL [dm3] 2L_12339560_DEL [dm6]	TTACTATT	T	3.367e^-4	1	DOWNSTREAM CG31862 INTERGENIC
X	15499022	X_15499022_DEL [dm3] X_15604989_DEL [dm6]	CTGTGTGTC	C	3.377e^-4	1	UTR_3_PRIME sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	8625221	2L_8625221_SNP [dm3] 2L_8625221_SNP [dm6]	A	T	3.381e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
2L	18700675	2L_18700675_SNP [dm3] 2L_18700675_SNP [dm6]	C	T	3.382e^-4	1	UTR_3_PRIME CG10376 DOWNSTREAM CG10341
2L	5978481	2L_5978481_INS [dm3] 2L_5978481_INS [dm6]	A	AGTCGGAGTTGGA...	3.391e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17872008	2R_17872008_SNP [dm3] 2R_21984503_SNP [dm6]	C	T	3.392e^-4	1	INTERGENIC
2L	18496909	2L_18496909_SNP [dm3] 2L_18496909_SNP [dm6]	C	T	3.394e^-4	1	INTRON kon
3L	837827	3L_837827_SNP [dm3] 3L_837827_SNP [dm6]	C	T	3.396e^-4	1	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	6179940	2L_6179940_SNP [dm3] 2L_6179940_SNP [dm6]	C	T	3.399e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6510194	X_6510194_SNP [dm3] X_6616161_SNP [dm6]	T	A	3.399e^-4	1	INTRON pigs
3R	26880631	3R_26880631_SNP [dm3] 3R_31054909_SNP [dm6]	G	C	3.404e^-4	1	UTR_3_PRIME dco UPSTREAM l_3_03670 DOWNSTREAM dco
X	18391303	X_18391303_SNP [dm3] X_18497270_SNP [dm6]	G	T	3.406e^-4	1	SYNONYMOUS_CODING GalNAc-T2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7119670	2L_7119670_SNP [dm3] 2L_7119670_SNP [dm6]	T	G	3.417e^-4	1	INTRON Pvf3
2L	7119972	2L_7119972_SNP [dm3] 2L_7119972_SNP [dm6]	T	A	3.417e^-4	1	INTRON Pvf3
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	3.424e^-4	1	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	3402430	2L_3402430_SNP [dm3] 2L_3402430_SNP [dm6]	T	G	3.425e^-4	1	INTERGENIC
2L	2390880	2L_2390880_SNP [dm3] 2L_2390880_SNP [dm6]	C	G	3.429e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	6518880	3R_6518880_SNP [dm3] 3R_10693158_SNP [dm6]	T	A	3.431e^-4	1	INTRON Skeletor
X	16829881	X_16829881_SNP [dm3] X_16935848_SNP [dm6]	G	A	3.440e^-4	1	NON_SYNONYMOUS_CODING CG4928 INTRON CG4928
2R	14679251	2R_14679251_SNP [dm3] 2R_18791746_SNP [dm6]	A	G	3.459e^-4	1	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22688749	3R_22688749_SNP [dm3] 3R_26863027_SNP [dm6]	T	C	3.463e^-4	1	UPSTREAM IntS12 & 1 other INTRON Lerp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13221361	2L_13221361_SNP [dm3] 2L_13221361_SNP [dm6]	C	T	3.471e^-4	1	UTR_3_PRIME CG5705 DOWNSTREAM Ski6	TF binding site BDTNP1_TFBS_Med
2L	18541895	2L_18541895_SNP [dm3] 2L_18541895_SNP [dm6]	A	G	3.477e^-4	1	SYNONYMOUS_CODING Pde11	TF binding site mE1_TFBS_cad
2L	17976553	2L_17976553_SNP [dm3] 2L_17976553_SNP [dm6]	C	T	3.483e^-4	1	INTRON btv
3L	2493139	3L_2493139_SNP [dm3] 3L_2493139_SNP [dm6]	T	A	3.509e^-4	1	DOWNSTREAM CG1146 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9597376	3R_9597376_SNP [dm3] 3R_13771654_SNP [dm6]	G	T	3.509e^-4	1	UPSTREAM CG9297 DOWNSTREAM Cht5 INTRON CG9297	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	17906969	2L_17906969_DEL [dm3] 2L_17906969_DEL [dm6]	TCATAATTTCTTCTTCT...	T	3.510e^-4	1	INTERGENIC
2L	14695557	2L_14695557_INS [dm3] 2L_14695557_INS [dm6]	T	TGCAATT	3.512e^-4	1	INTERGENIC
2L	10707645	2L_10707645_SNP [dm3] 2L_10707645_SNP [dm6]	T	G	3.525e^-4	1	INTRON Lip2
3R	22801072	3R_22801072_SNP [dm3] 3R_26975350_SNP [dm6]	G	A	3.537e^-4	1	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_sens
3R	21515614	3R_21515614_SNP [dm3] 3R_25689892_SNP [dm6]	C	A	3.544e^-4	1	INTERGENIC
X	19159399	X_19159399_DEL [dm3] X_19265366_DEL [dm6]	AA	A	3.560e^-4	1	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5874296	3L_5874296_SNP [dm3] 3L_5881196_SNP [dm6]	T	G	3.571e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3165750	2L_3165750_SNP [dm3] 2L_3165750_SNP [dm6]	A	G	3.578e^-4	1	INTRON Hydr2	TF binding site BDTNP1_TFBS_da
2L	2390906	2L_2390906_SNP [dm3] 2L_2390906_SNP [dm6]	T	G	3.582e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12519384	3L_12519384_SNP [dm3] 3L_12526284_SNP [dm6]	G	A	3.590e^-4	1	SYNONYMOUS_CODING eIF-2beta DOWNSTREAM nst	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4381436	3L_4381436_SNP [dm3] 3L_4381436_SNP [dm6]	C	T	3.593e^-4	1	SYNONYMOUS_CODING CG32240
2R	15383819	2R_15383819_SNP [dm3] 2R_19496314_SNP [dm6]	A	T	3.595e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16950768	2L_16950768_SNP [dm3] 2L_16950768_SNP [dm6]	C	A	3.595e^-4	1	UPSTREAM CR44393 INTERGENIC
2L	744272	2L_744272_SNP [dm3] 2L_744272_SNP [dm6]	C	T	3.627e^-4	1	UTR_5_PRIME Eaat2
2L	9545430	2L_9545430_SNP [dm3] 2L_9545430_SNP [dm6]	T	G	3.641e^-4	1	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3L	21752554	3L_21752554_SNP [dm3] 3L_21759454_SNP [dm6]	G	T	3.644e^-4	1	INTRON Syn1
2L	14229849	2L_14229849_SNP [dm3] 2L_14229849_SNP [dm6]	A	C	3.654e^-4	1	INTRON Dyrk2	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	23528469	3R_23528469_SNP [dm3] 3R_27702747_SNP [dm6]	G	C	3.659e^-4	1	SYNONYMOUS_CODING btz DOWNSTREAM CG12428	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10839490	X_10839490_SNP [dm3] X_10945457_SNP [dm6]	G	A	3.667e^-4	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3R	23474435	3R_23474435_SNP [dm3] 3R_27648713_SNP [dm6]	G	A	3.668e^-4	1	NON_SYNONYMOUS_CODING tau INTRON tau	TF binding site mE1_TFBS_chinmo
2L	18013702	2L_18013702_SNP [dm3] 2L_18013702_SNP [dm6]	T	G	3.688e^-4	1	INTRON rdo	regulatory region REDfly_CRMs
2L	5503192	2L_5503192_SNP [dm3] 2L_5503192_SNP [dm6]	C	T	3.709e^-4	1	INTERGENIC
2L	22868138	2L_22868138_SNP [dm3] 2L_22975406_SNP [dm6]	T	C	3.720e^-4	1	INTERGENIC
2L	18219714	2L_18219714_SNP [dm3] 2L_18219714_SNP [dm6]	G	A	3.730e^-4	1	INTRON CG42750
2R	18934410	2R_18934410_SNP [dm3] 2R_23046887_SNP [dm6]	C	T	3.732e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6879666	3L_6879666_SNP [dm3] 3L_6886566_SNP [dm6]	T	C	3.737e^-4	1	INTERGENIC
3R	4927311	3R_4927311_SNP [dm3] 3R_9101589_SNP [dm6]	C	T	3.739e^-4	1	INTRON pum
2R	8251385	2R_8251385_SNP [dm3] 2R_12363880_SNP [dm6]	G	T	3.744e^-4	1	DOWNSTREAM CG30043 EXON CR33013	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13354495	2R_13354495_SNP [dm3] 2R_17466990_SNP [dm6]	G	A	3.747e^-4	1	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19886501	2L_19886501_SNP [dm3] 2L_19886501_SNP [dm6]	G	T	3.758e^-4	1	INTRON sick	TF binding site mE1_TFBS_cad
3L	13162252	3L_13162252_INS [dm3] 3L_13169152_INS [dm6]	T	TGTGGTTTGTTTTCCCT...	3.767e^-4	1	INTERGENIC
X	7545377	X_7545377_SNP [dm3] X_7651344_SNP [dm6]	C	T	3.770e^-4	1	INTRON ct
3R	12960707	3R_12960707_SNP [dm3] 3R_17134985_SNP [dm6]	C	T	3.776e^-4	1	SYNONYMOUS_CODING CG31267
3R	21388966	3R_21388966_SNP [dm3] 3R_25563244_SNP [dm6]	T	A	3.778e^-4	1	INTRON msi
2R	8380112	2R_8380112_SNP [dm3] 2R_12492607_SNP [dm6]	C	A	3.780e^-4	1	INTRON fdl
2R	14579652	2R_14579652_SNP [dm3] 2R_18692147_SNP [dm6]	C	T	3.783e^-4	1	UTR_5_PRIME Sik3 INTRON Sik3
3R	15740054	3R_15740054_SNP [dm3] 3R_19914332_SNP [dm6]	G	A	3.788e^-4	1	UTR_3_PRIME CG42508 DOWNSTREAM Xport & 2 others
2L	9063688	2L_9063688_SNP [dm3] 2L_9063688_SNP [dm6]	C	T	3.790e^-4	1	INTRON CG31708	TF binding site mE1_TFBS_inv
2L	2701668	2L_2701668_SNP [dm3] 2L_2701668_SNP [dm6]	C	T	3.793e^-4	1	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2L	5803312	2L_5803312_SNP [dm3] 2L_5803312_SNP [dm6]	C	T	3.802e^-4	1	SYNONYMOUS_CODING CG7239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	10919580	2L_10919580_SNP [dm3] 2L_10919580_SNP [dm6]	A	G	3.803e^-4	1	INTRON dpr2
X	3761310	X_3761310_SNP [dm3] X_3867277_SNP [dm6]	C	T	3.805e^-4	1	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
X	2978063	X_2978063_SNP [dm3] X_3084030_SNP [dm6]	C	T	3.805e^-4	1	INTRON kirre
3R	4309404	3R_4309404_SNP [dm3] 3R_8483682_SNP [dm6]	T	A	3.809e^-4	1	INTERGENIC
2L	7214580	2L_7214580_SNP [dm3] 2L_7214580_SNP [dm6]	A	T	3.835e^-4	1	INTRON CG13784
2R	17219150	2R_17219150_SNP [dm3] 2R_21331645_SNP [dm6]	G	A	3.835e^-4	1	DOWNSTREAM snoRNA:Psi18S-841c & 2 others INTRON dom EXON snoRNA:Me28S-A2589c
2L	8936807	2L_8936807_SNP [dm3] 2L_8936807_SNP [dm6]	T	C	3.841e^-4	1	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6771587	2L_6771587_SNP [dm3] 2L_6771587_SNP [dm6]	T	A	3.846e^-4	1	UPSTREAM CG11321 INTRON CG11321
2L	16049507	2L_16049507_SNP [dm3] 2L_16049507_SNP [dm6]	T	A	3.850e^-4	1	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12943736	X_12943736_SNP [dm3] X_13049703_SNP [dm6]	A	T	3.860e^-4	1	INTRON rad
X	11357097	X_11357097_SNP [dm3] X_11463064_SNP [dm6]	C	T	3.861e^-4	1	INTRON CG43155
2R	17212720	2R_17212720_SNP [dm3] 2R_21325215_SNP [dm6]	T	A	3.864e^-4	1	UPSTREAM snoRNA:Me28S-A2589a INTRON dom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	5064467	2L_5064467_SNP [dm3] 2L_5064467_SNP [dm6]	G	T	3.864e^-4	1	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9640698	2L_9640698_SNP [dm3] 2L_9640698_SNP [dm6]	A	T	3.865e^-4	1	INTRON Apoltp
3L	10944284	3L_10944284_SNP [dm3] 3L_10951184_SNP [dm6]	G	A	3.868e^-4	1	INTERGENIC
3L	6879662	3L_6879662_SNP [dm3] 3L_6886562_SNP [dm6]	T	A	3.870e^-4	1	INTERGENIC
2R	14634506	2R_14634506_SNP [dm3] 2R_18747001_SNP [dm6]	A	G	3.870e^-4	1	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
3L	6879667	3L_6879667_INS [dm3] 3L_6886567_INS [dm6]	T	TC	3.883e^-4	1	INTERGENIC
2R	15776423	2R_15776423_SNP [dm3] 2R_19888918_SNP [dm6]	C	T	3.884e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13674631	2R_13674631_SNP [dm3] 2R_17787126_SNP [dm6]	A	G	3.891e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3L	17815597	3L_17815597_SNP [dm3] 3L_17822497_SNP [dm6]	T	A	3.905e^-4	1	UPSTREAM Grd INTRON Ir75c
2R	13726573	2R_13726573_SNP [dm3] 2R_17839068_SNP [dm6]	A	G	3.908e^-4	1	SYNONYMOUS_CODING grh	TF binding site BDTNP1_TFBS_da
2R	17920874	2R_17920874_SNP [dm3] 2R_22033369_SNP [dm6]	A	G	3.919e^-4	1	INTRON CG34370
3R	16872599	3R_16872599_SNP [dm3] 3R_21046877_SNP [dm6]	G	A	3.920e^-4	1	DOWNSTREAM CG7079 INTRON CG31207
2L	18219694	2L_18219694_SNP [dm3] 2L_18219694_SNP [dm6]	T	C	3.945e^-4	1	INTRON CG42750
2L	5661957	2L_5661957_SNP [dm3] 2L_5661957_SNP [dm6]	G	T	3.946e^-4	1	UPSTREAM Hsp60C EXON CR44821
X	3214624	X_3214624_SNP [dm3] X_3320591_SNP [dm6]	T	C	3.953e^-4	1	INTRON dnc & 1 other
2L	18932435	2L_18932435_SNP [dm3] 2L_18932435_SNP [dm6]	T	C	3.954e^-4	1	INTRON ssp3
2L	7363551	2L_7363551_SNP [dm3] 2L_7363551_SNP [dm6]	G	T	3.959e^-4	1	UTR_5_PRIME Wnt10	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17621214	3R_17621214_SNP [dm3] 3R_21795492_SNP [dm6]	C	A	3.979e^-4	1	INTRON CASK	TF binding site BDTNP1_TFBS_twi
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	3.982e^-4	1	INTRON CG31690
X	18394812	X_18394812_SNP [dm3] X_18500779_SNP [dm6]	T	C	3.992e^-4	1	SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	6584966	3L_6584966_SNP [dm3] 3L_6591866_SNP [dm6]	G	A	3.996e^-4	1	UTR_3_PRIME CG18769
2R	8249623	2R_8249623_SNP [dm3] 2R_12362118_SNP [dm6]	C	T	4.010e^-4	1	SPLICE_SITE_REGION CG30043 SYNONYMOUS_CODING CG30043
3L	6879650	3L_6879650_SNP [dm3] 3L_6886550_SNP [dm6]	G	A	4.022e^-4	1	INTERGENIC
X	6701269	X_6701269_SNP [dm3] X_6807236_SNP [dm6]	G	A	4.058e^-4	1	SYNONYMOUS_CODING pod1
2L	9799989	2L_9799989_INS [dm3] 2L_9799989_INS [dm6]	A	AG	4.065e^-4	1	INTRON nAChRalpha6
3L	12242384	3L_12242384_SNP [dm3] 3L_12249284_SNP [dm6]	G	A	4.074e^-4	1	INTRON app	TF binding site mE1_TFBS_cad
X	20220978	X_20220978_INS [dm3] X_20349951_INS [dm6]	A	AGCAGAA	4.081e^-4	1	INTERGENIC
2L	5449460	2L_5449460_SNP [dm3] 2L_5449460_SNP [dm6]	G	A	4.092e^-4	1	INTERGENIC
X	4345727	X_4345727_SNP [dm3] X_4451694_SNP [dm6]	G	A	4.092e^-4	1	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_inv
3L	6381146	3L_6381146_SNP [dm3] 3L_6388046_SNP [dm6]	T	A	4.110e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20220970	X_20220970_INS [dm3] X_20349943_INS [dm6]	A	ACCTCGACC	4.116e^-4	1	INTERGENIC	transposable element FlyBase
X	20220972	X_20220972_INS [dm3] X_20349945_INS [dm6]	A	ACTACTCGGTGC...	4.116e^-4	1	INTERGENIC
X	12484885	X_12484885_INS [dm3] X_12590852_INS [dm6]	T	TT	4.117e^-4	1	INTRON LIMK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23856556	3R_23856556_SNP [dm3] 3R_28030834_SNP [dm6]	G	A	4.125e^-4	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12259876	2L_12259876_SNP [dm3] 2L_12259876_SNP [dm6]	A	G	4.135e^-4	1	INTRON aret
2R	14684538	2R_14684538_SNP [dm3] 2R_18797033_SNP [dm6]	T	A	4.138e^-4	1	UTR_3_PRIME l_2_08717 UPSTREAM MFS15 DOWNSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8894487	2L_8894487_SNP [dm3] 2L_8894487_SNP [dm6]	C	A	4.140e^-4	1	INTERGENIC
3R	10242066	3R_10242066_SNP [dm3] 3R_14416344_SNP [dm6]	C	G	4.148e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19916814	3R_19916814_SNP [dm3] 3R_24091092_SNP [dm6]	G	A	4.148e^-4	1	INTRON 4EHP
3L	10343927	3L_10343927_SNP [dm3] 3L_10350827_SNP [dm6]	G	T	4.150e^-4	1	INTRON CR44327
2L	6394996	2L_6394996_SNP [dm3] 2L_6394996_SNP [dm6]	C	T	4.156e^-4	1	DOWNSTREAM CG42369 INTRON CG42368
X	20681011	X_20681011_SNP [dm3] X_20809984_SNP [dm6]	A	T	4.161e^-4	1	INTRON shakB
X	16757862	X_16757862_SNP [dm3] X_16863829_SNP [dm6]	T	G	4.171e^-4	1	INTRON CG13003
2R	15381887	2R_15381887_SNP [dm3] 2R_19494382_SNP [dm6]	G	A	4.175e^-4	1	UTR_3_PRIME hpo DOWNSTREAM Rep
2L	16956373	2L_16956373_SNP [dm3] 2L_16956373_SNP [dm6]	T	A	4.179e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19007094	X_19007094_SNP [dm3] X_19113061_SNP [dm6]	C	G	4.184e^-4	1	INTERGENIC
3L	13181535	3L_13181535_SNP [dm3] 3L_13188435_SNP [dm6]	A	T	4.192e^-4	1	INTERGENIC
2L	13129279	2L_13129279_SNP [dm3] 2L_13129279_SNP [dm6]	G	A	4.198e^-4	1	INTERGENIC
X	2488838	X_2488838_SNP [dm3] X_2594805_SNP [dm6]	G	A	4.206e^-4	1	INTRON egh
3R	8527507	3R_8527507_SNP [dm3] 3R_12701785_SNP [dm6]	G	T	4.208e^-4	1	INTRON Past1
2L	9315869	2L_9315869_SNP [dm3] 2L_9315869_SNP [dm6]	A	G	4.218e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6771645	2L_6771645_SNP [dm3] 2L_6771645_SNP [dm6]	T	A	4.240e^-4	1	UPSTREAM CG11321 INTRON CG11321
3R	22684457	3R_22684457_SNP [dm3] 3R_26858735_SNP [dm6]	A	T	4.272e^-4	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2R	3573442	2R_3573442_SNP [dm3] 2R_7685937_SNP [dm6]	G	C	4.275e^-4	1	INTRON CG1399
3R	11589586	3R_11589586_SNP [dm3] 3R_15763864_SNP [dm6]	G	A	4.285e^-4	1	DOWNSTREAM CG12784 INTERGENIC
2L	10475453	2L_10475453_SNP [dm3] 2L_10475453_SNP [dm6]	G	C	4.294e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19268761	2R_19268761_SNP [dm3] 2R_23381238_SNP [dm6]	C	G	4.301e^-4	1	UTR_5_PRIME yellow-d2 DOWNSTREAM yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3215026	X_3215026_SNP [dm3] X_3320993_SNP [dm6]	G	A	4.302e^-4	1	INTRON dnc & 1 other
2L	17462718	2L_17462718_SNP [dm3] 2L_17462718_SNP [dm6]	G	A	4.303e^-4	1	INTRON BicD
X	5080314	X_5080314_SNP [dm3] X_5186281_SNP [dm6]	T	G	4.304e^-4	1	INTRON rg & 1 other
2R	19194763	2R_19194763_SNP [dm3] 2R_23307240_SNP [dm6]	G	T	4.313e^-4	1	INTERGENIC
3L	1895262	3L_1895262_SNP [dm3] 3L_1895262_SNP [dm6]	C	T	4.316e^-4	1	SYNONYMOUS_CODING CG1887
2R	2403235	2R_2403235_SNP [dm3] 2R_6515730_SNP [dm6]	A	G	4.319e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3236343	2L_3236343_SNP [dm3] 2L_3236343_SNP [dm6]	A	T	4.328e^-4	1	INTERGENIC
2L	6771171	2L_6771171_SNP [dm3] 2L_6771171_SNP [dm6]	A	G	4.328e^-4	1	UPSTREAM CG11321 INTRON CG11321
X	8947722	X_8947722_SNP [dm3] X_9053689_SNP [dm6]	T	C	4.328e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7532481	X_7532481_SNP [dm3] X_7638448_SNP [dm6]	A	C	4.331e^-4	1	INTRON ct
2R	15384038	2R_15384038_SNP [dm3] 2R_19496533_SNP [dm6]	C	T	4.335e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7997375	2L_7997375_SNP [dm3] 2L_7997375_SNP [dm6]	T	C	4.338e^-4	1	UTR_5_PRIME CG7227 DOWNSTREAM CR44996
3R	23265872	3R_23265872_DEL [dm3] 3R_27440150_DEL [dm6]	CAC	C	4.362e^-4	1	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	20602111	3R_20602111_SNP [dm3] 3R_24776389_SNP [dm6]	C	T	4.364e^-4	1	INTRON CG42331	TF binding site mE1_TFBS_cad
3R	14834844	3R_14834844_SNP [dm3] 3R_19009122_SNP [dm6]	G	T	4.375e^-4	1	INTRON gukh
2R	16983240	2R_16983240_SNP [dm3] 2R_21095735_SNP [dm6]	C	A	4.397e^-4	1	DOWNSTREAM CG4038 INTRON CG34396
X	17449479	X_17449479_SNP [dm3] X_17555446_SNP [dm6]	C	A	4.400e^-4	1	INTRON CG43658
2R	19490239	2R_19490239_SNP [dm3] 2R_23602716_SNP [dm6]	G	A	4.405e^-4	1	UTR_5_PRIME CG5398 UPSTREAM CG10332 & 2 others
X	16848533	X_16848533_SNP [dm3] X_16954500_SNP [dm6]	T	A	4.405e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6378863	2L_6378863_SNP [dm3] 2L_6378863_SNP [dm6]	G	A	4.418e^-4	1	SYNONYMOUS_CODING CG42368
2L	16596226	2L_16596226_SNP [dm3] 2L_16596226_SNP [dm6]	A	T	4.419e^-4	1	INTRON CG42389
2L	18639885	2L_18639885_SNP [dm3] 2L_18639885_SNP [dm6]	G	C	4.419e^-4	1	INTRON MESR3
3R	8095197	3R_8095197_SNP [dm3] 3R_12269475_SNP [dm6]	G	C	4.425e^-4	1	INTRON svp EXON CR44039
3R	8096489	3R_8096489_SNP [dm3] 3R_12270767_SNP [dm6]	T	C	4.425e^-4	1	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp	TF binding site mE1_TFBS_inv
X	2996142	X_2996142_SNP [dm3] X_3102109_SNP [dm6]	G	C	4.427e^-4	1	INTRON kirre
2L	16832075	2L_16832075_SNP [dm3] 2L_16832075_SNP [dm6]	C	T	4.442e^-4	1	UTR_3_PRIME CG31739 & 1 other DOWNSTREAM CG31739
2L	13723363	2L_13723363_SNP [dm3] 2L_13723363_SNP [dm6]	C	A	4.461e^-4	1	SYNONYMOUS_CODING CG9014
2L	6769983	2L_6769983_SNP [dm3] 2L_6769983_SNP [dm6]	A	C	4.477e^-4	1	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4413826	2L_4413826_SNP [dm3] 2L_4413826_SNP [dm6]	A	T	4.478e^-4	1	INTRON CG15431
X	20683539	X_20683539_SNP [dm3] X_20812512_SNP [dm6]	G	T	4.495e^-4	1	INTRON shakB
3L	1137587	3L_1137587_SNP [dm3] 3L_1137587_SNP [dm6]	C	T	4.496e^-4	1	INTERGENIC
2R	8251388	2R_8251388_SNP [dm3] 2R_12363883_SNP [dm6]	T	C	4.497e^-4	1	DOWNSTREAM CG30043 EXON CR33013	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5984089	3L_5984089_SNP [dm3] 3L_5990989_SNP [dm6]	G	C	4.502e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9640777	2L_9640777_SNP [dm3] 2L_9640777_SNP [dm6]	A	C	4.503e^-4	1	INTRON Apoltp
2R	1733786	2R_1733786_SNP [dm3] 2R_5846281_SNP [dm6]	C	A	4.505e^-4	1	INTRON dpr12
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	4.509e^-4	1	INTRON CG31690
3R	22105728	3R_22105728_SNP [dm3] 3R_26280006_SNP [dm6]	A	G	4.510e^-4	1	INTERGENIC
X	12485733	X_12485733_SNP [dm3] X_12591700_SNP [dm6]	G	T	4.510e^-4	1	DOWNSTREAM CG1824 INTRON LIMK1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_zfh1
2L	9308222	2L_9308222_INS [dm3] 2L_9308222_INS [dm6]	T	TCTTACAA	4.511e^-4	1	INTERGENIC
2R	18757646	2R_18757646_SNP [dm3] 2R_22870123_SNP [dm6]	C	T	4.512e^-4	1	SYNONYMOUS_CODING fd59A	TF binding site mE1_TFBS_cad
X	16848545	X_16848545_DEL [dm3] X_16954512_DEL [dm6]	AAAA	A	4.512e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12113805	2L_12113805_SNP [dm3] 2L_12113805_SNP [dm6]	A	T	4.525e^-4	1	UPSTREAM CG17211 INTERGENIC	TF binding site mE1_TFBS_Trl
X	14161270	X_14161270_SNP [dm3] X_14267237_SNP [dm6]	A	T	4.541e^-4	1	UPSTREAM CG13404 INTRON na
3R	22171769	3R_22171769_SNP [dm3] 3R_26346047_SNP [dm6]	G	A	4.541e^-4	1	UPSTREAM CG6036 INTRON CG33970	TF binding site mE1_TFBS_inv
3L	2609812	3L_2609812_SNP [dm3] 3L_2609812_SNP [dm6]	A	C	4.542e^-4	1	UTR_3_PRIME Pxn INTRON Pxn
3R	4857772	3R_4857772_DEL [dm3] 3R_9032050_DEL [dm6]	TT	T	4.543e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	4236171	2L_4236171_SNP [dm3] 2L_4236171_SNP [dm6]	T	C	4.566e^-4	1	INTERGENIC
3L	3493763	3L_3493763_SNP [dm3] 3L_3493763_SNP [dm6]	G	A	4.570e^-4	1	INTRON CG42324	TF binding site mE1_TFBS_inv
2R	3396003	2R_3396003_SNP [dm3] 2R_7508498_SNP [dm6]	G	A	4.571e^-4	1	UTR_3_PRIME didum DOWNSTREAM CG12736 & 1 other
2L	7088804	2L_7088804_SNP [dm3] 2L_7088804_SNP [dm6]	A	G	4.576e^-4	1	INTERGENIC
X	20683538	X_20683538_SNP [dm3] X_20812511_SNP [dm6]	G	T	4.585e^-4	1	INTRON shakB
2L	2858582	2L_2858582_DEL [dm3] 2L_2858582_DEL [dm6]	ACGAGATTTGTT...	A	4.587e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12259454	2L_12259454_SNP [dm3] 2L_12259454_SNP [dm6]	C	G	4.592e^-4	1	INTRON aret
X	4554601	X_4554601_SNP [dm3] X_4660568_SNP [dm6]	A	G	4.592e^-4	1	INTRON CG3009
2R	15776357	2R_15776357_SNP [dm3] 2R_19888852_SNP [dm6]	C	T	4.600e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2438252	2R_2438252_INS [dm3] 2R_6550747_INS [dm6]	T	TCAT	4.603e^-4	1	INTRON jing
X	9868344	X_9868344_SNP [dm3] X_9974311_SNP [dm6]	G	A	4.613e^-4	1	INTRON CG43386
2L	3373880	2L_3373880_SNP [dm3] 2L_3373880_SNP [dm6]	G	A	4.613e^-4	1	SYNONYMOUS_CODING CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17980024	2L_17980024_SNP [dm3] 2L_17980024_SNP [dm6]	T	C	4.620e^-4	1	SYNONYMOUS_CODING btv
2L	9544798	2L_9544798_DEL [dm3] 2L_9544798_DEL [dm6]	AATAAGTCACCTCA...	A	4.621e^-4	1	UTR_3_PRIME CG13113 UPSTREAM CG13114	TF binding site mE1_TFBS_cad
2L	18705770	2L_18705770_SNP [dm3] 2L_18705770_SNP [dm6]	C	A	4.622e^-4	1	UPSTREAM Jwa DOWNSTREAM Faf INTERGENIC
3L	8302290	3L_8302290_SNP [dm3] 3L_8309190_SNP [dm6]	A	G	4.623e^-4	1	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5379286	3R_5379286_SNP [dm3] 3R_9553564_SNP [dm6]	C	T	4.630e^-4	1	SYNONYMOUS_CODING RnpS1 DOWNSTREAM CG9386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17462696	2L_17462696_SNP [dm3] 2L_17462696_SNP [dm6]	C	G	4.652e^-4	1	INTRON BicD
2L	4520598	2L_4520598_SNP [dm3] 2L_4520598_SNP [dm6]	A	G	4.656e^-4	1	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11223973	2L_11223973_SNP [dm3] 2L_11223973_SNP [dm6]	A	C	4.663e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_sens
3L	3544852	3L_3544852_SNP [dm3] 3L_3544852_SNP [dm6]	T	C	4.665e^-4	1	UPSTREAM Eip63E INTRON Eip63E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	16035732	3R_16035732_SNP [dm3] 3R_20210010_SNP [dm6]	A	C	4.684e^-4	1	UPSTREAM CG17199 INTRON Nlg4
3R	9601026	3R_9601026_SNP [dm3] 3R_13775304_SNP [dm6]	C	T	4.688e^-4	1	SPLICE_SITE_REGION CG9297 SYNONYMOUS_CODING CG9297
2L	2842302	2L_2842302_SNP [dm3] 2L_2842302_SNP [dm6]	G	T	4.690e^-4	1	NON_SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
3R	25452725	3R_25452725_SNP [dm3] 3R_29627003_SNP [dm6]	A	C	4.698e^-4	1	INTERGENIC
3L	10981132	3L_10981132_SNP [dm3] 3L_10988032_SNP [dm6]	C	G	4.704e^-4	1	INTRON klu
2L	9544826	2L_9544826_DEL [dm3] 2L_9544826_DEL [dm6]	TGGC	T	4.726e^-4	1	UTR_3_PRIME CG13113 UPSTREAM CG13114
3L	12834469	3L_12834469_INS [dm3] 3L_12841369_INS [dm6]	A	AA	4.740e^-4	1	INTRON CG10960
2L	1991696	2L_1991696_SNP [dm3] 2L_1991696_SNP [dm6]	T	G	4.742e^-4	1	UTR_3_PRIME Obp22a DOWNSTREAM Obp22a & 1 other
X	8947886	X_8947886_SNP [dm3] X_9053853_SNP [dm6]	C	A	4.748e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
2L	15102233	2L_15102233_SNP [dm3] 2L_15102233_SNP [dm6]	C	T	4.748e^-4	1	INTERGENIC
2L	6770107	2L_6770107_SNP [dm3] 2L_6770107_SNP [dm6]	A	C	4.752e^-4	1	INTRON CG11321	TF binding site mE1_TFBS_chinmo
2L	13139175	2L_13139175_SNP [dm3] 2L_13139175_SNP [dm6]	T	C	4.753e^-4	1	INTERGENIC
3R	25448433	3R_25448433_SNP [dm3] 3R_29622711_SNP [dm6]	G	A	4.754e^-4	1	INTERGENIC
3R	21014129	3R_21014129_SNP [dm3] 3R_25188407_SNP [dm6]	G	A	4.761e^-4	1	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_Med
2L	5804347	2L_5804347_SNP [dm3] 2L_5804347_SNP [dm6]	T	C	4.770e^-4	1	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16831432	2L_16831432_SNP [dm3] 2L_16831432_SNP [dm6]	C	A	4.772e^-4	1	UTR_3_PRIME CG31739 DOWNSTREAM CG13282	TF binding site mE1_TFBS_cad
2L	6381280	2L_6381280_SNP [dm3] 2L_6381280_SNP [dm6]	G	A	4.776e^-4	1	UTR_5_PRIME CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
3L	12837142	3L_12837142_DEL [dm3] 3L_12844042_DEL [dm6]	TAAAGCTTGT	T	4.782e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	5817039	2L_5817039_SNP [dm3] 2L_5817039_SNP [dm6]	C	T	4.794e^-4	1	DOWNSTREAM CG31644 INTERGENIC
3R	14924511	3R_14924511_SNP [dm3] 3R_19098789_SNP [dm6]	T	A	4.803e^-4	1	INTRON CG6040
3L	7933172	3L_7933172_INS [dm3] 3L_7940072_INS [dm6]	A	ATG	4.804e^-4	1	INTERGENIC
3R	25186388	3R_25186388_SNP [dm3] 3R_29360666_SNP [dm6]	A	T	4.810e^-4	1	INTERGENIC
2L	2736573	2L_2736573_SNP [dm3] 2L_2736573_SNP [dm6]	C	G	4.814e^-4	1	UPSTREAM mir-4914 INTRON CG31689
2L	18576240	2L_18576240_SNP [dm3] 2L_18576240_SNP [dm6]	T	A	4.825e^-4	1	INTRON Pde11
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	4.828e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	16833611	X_16833611_SNP [dm3] X_16939578_SNP [dm6]	T	C	4.837e^-4	1	SYNONYMOUS_CODING wus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6771514	2L_6771514_DEL [dm3] 2L_6771514_DEL [dm6]	TAA	C	4.841e^-4	1	UPSTREAM CG11321 INTRON CG11321
2L	18540957	2L_18540957_SNP [dm3] 2L_18540957_SNP [dm6]	T	C	4.842e^-4	1	INTRON Pde11
2L	4415317	2L_4415317_SNP [dm3] 2L_4415317_SNP [dm6]	T	C	4.853e^-4	1	INTRON CG15431
2L	3369699	2L_3369699_SNP [dm3] 2L_3369699_SNP [dm6]	A	T	4.857e^-4	1	UPSTREAM CG34394 INTRON CG34394
3R	15340349	3R_15340349_INS [dm3] 3R_19514627_INS [dm6]	A	AACATATAA	4.859e^-4	1	INTRON Dys
X	3198986	X_3198986_SNP [dm3] X_3304953_SNP [dm6]	T	G	4.862e^-4	1	INTRON dnc	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	21388965	3R_21388965_SNP [dm3] 3R_25563243_SNP [dm6]	T	A	4.871e^-4	1	INTRON msi
3L	6630087	3L_6630087_SNP [dm3] 3L_6636987_SNP [dm6]	C	T	4.873e^-4	1	INTERGENIC
X	2996098	X_2996098_SNP [dm3] X_3102065_SNP [dm6]	T	C	4.873e^-4	1	INTRON kirre
2R	19490193	2R_19490193_SNP [dm3] 2R_23602670_SNP [dm6]	T	C	4.876e^-4	1	UTR_5_PRIME CG5398 UPSTREAM CG10332 & 2 others
2R	13674601	2R_13674601_SNP [dm3] 2R_17787096_SNP [dm6]	A	G	4.877e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2L	12339536	2L_12339536_SNP [dm3] 2L_12339536_SNP [dm6]	T	C	4.881e^-4	1	DOWNSTREAM CG31862 INTERGENIC
3L	23237512	3L_23237512_SNP [dm3] 3L_23244412_SNP [dm6]	G	A	4.886e^-4	1	INTRON nAChRalpha4
2L	19271231	2L_19271231_SNP [dm3] 2L_19271231_SNP [dm6]	T	G	4.892e^-4	1	INTRON CR44190
3L	838324	3L_838324_SNP [dm3] 3L_838324_SNP [dm6]	C	T	4.895e^-4	1	SYNONYMOUS_CODING CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16898575	3R_16898575_SNP [dm3] 3R_21072853_SNP [dm6]	C	T	4.898e^-4	1	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17466112	2R_17466112_INS [dm3] 2R_21578607_INS [dm6]	A	AT	4.902e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22684478	3R_22684478_SNP [dm3] 3R_26858756_SNP [dm6]	A	T	4.919e^-4	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2R	9759185	2R_9759185_SNP [dm3] 2R_13871680_SNP [dm6]	G	A	4.923e^-4	1	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
X	20680874	X_20680874_SNP [dm3] X_20809847_SNP [dm6]	A	G	4.926e^-4	1	INTRON shakB
2L	7082339	2L_7082339_SNP [dm3] 2L_7082339_SNP [dm6]	G	T	4.927e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11774955	3R_11774955_SNP [dm3] 3R_15949233_SNP [dm6]	T	C	4.931e^-4	1	DOWNSTREAM CG31088 INTRON Sap47
3R	14924547	3R_14924547_SNP [dm3] 3R_19098825_SNP [dm6]	C	G	4.934e^-4	1	INTRON CG6040
2L	20558451	2L_20558451_INS [dm3] 2L_20558451_INS [dm6]	G	AAAAGGTGTGT...	4.945e^-4	1	INTERGENIC
2L	5959439	2L_5959439_SNP [dm3] 2L_5959439_SNP [dm6]	G	T	4.946e^-4	1	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
3L	8722424	3L_8722424_SNP [dm3] 3L_8729324_SNP [dm6]	C	T	4.951e^-4	1	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
2L	9796660	2L_9796660_SNP [dm3] 2L_9796660_SNP [dm6]	C	T	4.956e^-4	1	UTR_3_PRIME nAChRalpha6 DOWNSTREAM nAChRalpha6
2L	16289681	2L_16289681_SNP [dm3] 2L_16289681_SNP [dm6]	C	T	4.964e^-4	1	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
3L	9593446	3L_9593446_SNP [dm3] 3L_9600346_SNP [dm6]	C	T	4.969e^-4	1	DOWNSTREAM CG3088 & 1 other INTERGENIC
2L	3087389	2L_3087389_SNP [dm3] 2L_3087389_SNP [dm6]	A	G	4.981e^-4	1	UPSTREAM toc INTRON toc
2R	18459480	2R_18459480_SNP [dm3] 2R_22571975_SNP [dm6]	T	C	4.985e^-4	1	INTRON dnr1	TF binding site BDTNP1_TFBS_dl
3R	14429836	3R_14429836_SNP [dm3] 3R_18604114_SNP [dm6]	T	A	4.987e^-4	1	INTRON qin & 1 other
2L	18013670	2L_18013670_SNP [dm3] 2L_18013670_SNP [dm6]	G	A	4.998e^-4	1	INTRON rdo	regulatory region REDfly_CRMs
X	19236873	X_19236873_SNP [dm3] X_19342840_SNP [dm6]	A	G	5.010e^-4	1	SPLICE_SITE_REGION nAChRalpha7 INTRON nAChRalpha7
2L	4236838	2L_4236838_SNP [dm3] 2L_4236838_SNP [dm6]	T	A	5.023e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25529880	3R_25529880_SNP [dm3] 3R_29704158_SNP [dm6]	T	C	5.050e^-4	1	INTERGENIC
2L	2736549	2L_2736549_SNP [dm3] 2L_2736549_SNP [dm6]	G	T	5.053e^-4	1	INTRON CG31689
2L	16860807	2L_16860807_SNP [dm3] 2L_16860807_SNP [dm6]	T	A	5.061e^-4	1	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
2L	5791637	2L_5791637_SNP [dm3] 2L_5791637_SNP [dm6]	G	C	5.061e^-4	1	INTRON CG9171
2R	17900948	2R_17900948_SNP [dm3] 2R_22013443_SNP [dm6]	G	A	5.064e^-4	1	INTRON CG34370
2R	8264734	2R_8264734_SNP [dm3] 2R_12377229_SNP [dm6]	A	G	5.065e^-4	1	SYNONYMOUS_CODING Cpr49Aa	TF binding site mE1_TFBS_chinmo
3R	26878268	3R_26878268_SNP [dm3] 3R_31052546_SNP [dm6]	A	G	5.067e^-4	1	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2736548	2L_2736548_SNP [dm3] 2L_2736548_SNP [dm6]	A	G	5.073e^-4	1	INTRON CG31689
2L	5572842	2L_5572842_SNP [dm3] 2L_5572842_SNP [dm6]	C	T	5.082e^-4	1	INTERGENIC
2L	6771324	2L_6771324_SNP [dm3] 2L_6771324_SNP [dm6]	A	T	5.083e^-4	1	UPSTREAM CG11321 INTRON CG11321
3L	2194862	3L_2194862_SNP [dm3] 3L_2194862_SNP [dm6]	T	A	5.085e^-4	1	INTERGENIC
3L	1458319	3L_1458319_SNP [dm3] 3L_1458319_SNP [dm6]	G	T	5.094e^-4	1	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13608231	X_13608231_SNP [dm3] X_13714198_SNP [dm6]	T	C	5.094e^-4	1	UTR_3_PRIME NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	10320164	2R_10320164_SNP [dm3] 2R_14432659_SNP [dm6]	C	T	5.097e^-4	1	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8047861	3L_8047861_SNP [dm3] 3L_8054761_SNP [dm6]	G	A	5.100e^-4	1	SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14772708	X_14772708_DEL [dm3] X_14878675_DEL [dm6]	TACTGTATTGCTAAATATAA...	T	5.115e^-4	1	INTRON Flo2 & 2 others
2L	16860821	2L_16860821_SNP [dm3] 2L_16860821_SNP [dm6]	T	A	5.123e^-4	1	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
3R	8092016	3R_8092016_SNP [dm3] 3R_12266294_SNP [dm6]	T	A	5.123e^-4	1	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3623358	2R_3623358_SNP [dm3] 2R_7735853_SNP [dm6]	G	A	5.129e^-4	1	UPSTREAM CG18812 INTERGENIC
3L	18346616	3L_18346616_SNP [dm3] 3L_18353516_SNP [dm6]	G	C	5.143e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9680051	3R_9680051_SNP [dm3] 3R_13854329_SNP [dm6]	A	T	5.146e^-4	1	DOWNSTREAM CG14362 INTERGENIC
2L	6771685	2L_6771685_SNP [dm3] 2L_6771685_SNP [dm6]	C	T	5.168e^-4	1	UPSTREAM CG11321 INTRON CG11321
3L	17814246	3L_17814246_SNP [dm3] 3L_17821146_SNP [dm6]	G	A	5.171e^-4	1	UPSTREAM Ir75b INTRON Ir75c
2L	16610347	2L_16610347_SNP [dm3] 2L_16610347_SNP [dm6]	C	T	5.179e^-4	1	DOWNSTREAM CG4631 INTRON CG42389
3L	16871863	3L_16871863_SNP [dm3] 3L_16878763_SNP [dm6]	G	A	5.179e^-4	1	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4730473	X_4730473_SNP [dm3] X_4836440_SNP [dm6]	C	T	5.180e^-4	1	INTERGENIC
X	15331257	X_15331257_SNP [dm3] X_15437224_SNP [dm6]	G	A	5.188e^-4	1	INTRON Cngl
2R	8463311	2R_8463311_SNP [dm3] 2R_12575806_SNP [dm6]	C	G	5.190e^-4	1	UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
2L	16751963	2L_16751963_DEL [dm3] 2L_16751963_DEL [dm6]	TT	T	5.193e^-4	1	UTR_3_PRIME CG17912
2R	15776407	2R_15776407_SNP [dm3] 2R_19888902_SNP [dm6]	C	T	5.198e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23474606	3R_23474606_SNP [dm3] 3R_27648884_SNP [dm6]	A	T	5.203e^-4	1	NON_SYNONYMOUS_CODING tau INTRON tau
2R	15385890	2R_15385890_SNP [dm3] 2R_19498385_SNP [dm6]	C	T	5.205e^-4	1	INTRON CG15120	TF binding site mE1_TFBS_cad
3L	837599	3L_837599_SNP [dm3] 3L_837599_SNP [dm6]	C	T	5.211e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	23856730	3R_23856730_SNP [dm3] 3R_28031008_SNP [dm6]	T	A	5.213e^-4	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11369181	3L_11369181_SNP [dm3] 3L_11376081_SNP [dm6]	C	T	5.213e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9680079	3R_9680079_SNP [dm3] 3R_13854357_SNP [dm6]	T	A	5.220e^-4	1	DOWNSTREAM CG14362 INTERGENIC
2L	10070091	2L_10070091_SNP [dm3] 2L_10070091_SNP [dm6]	A	G	5.228e^-4	1	INTRON CG44153
3L	3058843	3L_3058843_DEL [dm3] 3L_3058843_DEL [dm6]	AA	A	5.231e^-4	1	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5144752	3R_5144752_SNP [dm3] 3R_9319030_SNP [dm6]	T	C	5.235e^-4	1	INTRON CG8861
3L	2831705	3L_2831705_SNP [dm3] 3L_2831705_SNP [dm6]	C	T	5.240e^-4	1	INTRON CG43444
3R	25370756	3R_25370756_SNP [dm3] 3R_29545034_SNP [dm6]	T	C	5.247e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10950394	3L_10950394_SNP [dm3] 3L_10957294_SNP [dm6]	T	C	5.260e^-4	1	INTERGENIC
2R	13674679	2R_13674679_SNP [dm3] 2R_17787174_SNP [dm6]	T	C	5.261e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
X	12664680	X_12664680_SNP [dm3] X_12770647_SNP [dm6]	A	G	5.265e^-4	1	UTR_3_PRIME CG3812	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13175477	3L_13175477_SNP [dm3] 3L_13182377_SNP [dm6]	C	G	5.272e^-4	1	INTERGENIC
3L	10343928	3L_10343928_SNP [dm3] 3L_10350828_SNP [dm6]	G	T	5.273e^-4	1	INTRON CR44327
2R	15384029	2R_15384029_SNP [dm3] 2R_19496524_SNP [dm6]	C	T	5.275e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16361612	2R_16361612_SNP [dm3] 2R_20474107_SNP [dm6]	A	G	5.291e^-4	1	INTRON CG12484
3R	13419465	3R_13419465_INS [dm3] 3R_17593743_INS [dm6]	A	AA	5.292e^-4	1	UPSTREAM CG7587 INTERGENIC
2L	10478991	2L_10478991_SNP [dm3] 2L_10478991_SNP [dm6]	A	T	5.295e^-4	1	INTRON RluA-2
2L	6771650	2L_6771650_SNP [dm3] 2L_6771650_SNP [dm6]	C	T	5.295e^-4	1	UPSTREAM CG11321 INTRON CG11321
3L	17813443	3L_17813443_SNP [dm3] 3L_17820343_SNP [dm6]	A	G	5.313e^-4	1	UPSTREAM Ir75b DOWNSTREAM Ir75c INTERGENIC
3R	15340341	3R_15340341_DEL [dm3] 3R_19514619_DEL [dm6]	ATTTTGT	A	5.322e^-4	1	INTRON Dys
3L	18685080	3L_18685080_SNP [dm3] 3L_18691980_SNP [dm6]	A	T	5.327e^-4	1	INTERGENIC
X	5156834	X_5156834_SNP [dm3] X_5262801_SNP [dm6]	C	T	5.329e^-4	1	INTERGENIC
X	7649735	X_7649735_SNP [dm3] X_7755702_SNP [dm6]	G	A	5.335e^-4	1	INTERGENIC
2L	3111095	2L_3111095_SNP [dm3] 2L_3111095_SNP [dm6]	C	G	5.341e^-4	1	DOWNSTREAM PpD6 INTRON toc
2R	18232088	2R_18232088_SNP [dm3] 2R_22344583_SNP [dm6]	T	C	5.343e^-4	1	INTRON Liprin-gamma
X	14566468	X_14566468_SNP [dm3] X_14672435_SNP [dm6]	C	T	5.347e^-4	1	INTERGENIC
3R	14349843	3R_14349843_SNP [dm3] 3R_18524121_SNP [dm6]	A	G	5.349e^-4	1	INTRON fru
2L	20504336	2L_20504336_SNP [dm3] 2L_20504336_SNP [dm6]	G	A	5.354e^-4	1	INTERGENIC
3R	23055674	3R_23055674_SNP [dm3] 3R_27229952_SNP [dm6]	T	C	5.355e^-4	1	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11311530	2L_11311530_SNP [dm3] 2L_11311530_SNP [dm6]	G	A	5.364e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3813670	2L_3813670_SNP [dm3] 2L_3813670_SNP [dm6]	C	A	5.367e^-4	1	UPSTREAM CG3407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8209861	3L_8209861_INS [dm3] 3L_8216761_INS [dm6]	A	ATGTACATA	5.369e^-4	1	DOWNSTREAM CG8012 INTERGENIC
X	6693040	X_6693040_DEL [dm3] X_6799007_DEL [dm6]	ACCAA	A	5.372e^-4	1	INTRON C3G
2L	3521155	2L_3521155_SNP [dm3] 2L_3521155_SNP [dm6]	G	A	5.374e^-4	1	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6771345	2L_6771345_SNP [dm3] 2L_6771345_SNP [dm6]	G	T	5.375e^-4	1	UPSTREAM CG11321 INTRON CG11321
X	6470238	X_6470238_DEL [dm3] X_6576205_DEL [dm6]	AA	A	5.383e^-4	1	INTRON CG34417
X	15804851	X_15804851_SNP [dm3] X_15910818_SNP [dm6]	C	T	5.397e^-4	1	UPSTREAM CG8909 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	8370900	2L_8370900_SNP [dm3] 2L_8370900_SNP [dm6]	C	G	5.397e^-4	1	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
3L	12837418	3L_12837418_SNP [dm3] 3L_12844318_SNP [dm6]	C	T	5.408e^-4	1	UTR_3_PRIME CG10948
2R	7558045	2R_7558045_SNP [dm3] 2R_11670540_SNP [dm6]	C	T	5.411e^-4	1	INTRON Roc2 & 1 other
3R	24122028	3R_24122028_SNP [dm3] 3R_28296306_SNP [dm6]	C	G	5.416e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21889661	X_21889661_SNP [dm3] X_22487825_SNP [dm6]	G	C	5.426e^-4	1	DOWNSTREAM CR43493 & 1 other INTRON l_1_G0196
2R	12376720	2R_12376720_SNP [dm3] 2R_16489215_SNP [dm6]	A	G	5.431e^-4	1	DOWNSTREAM CG33459 INTERGENIC	TF binding site mE1_TFBS_inv
3L	8632475	3L_8632475_INS [dm3] 3L_8639375_INS [dm6]	A	AA	5.433e^-4	1	DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12046405	2R_12046405_INS [dm3] 2R_16158900_INS [dm6]	G	GCTATTCGAAATTTCGAAAT...	5.459e^-4	1	UPSTREAM CG10734 INTRON lbk
3R	17952380	3R_17952380_SNP [dm3] 3R_22126658_SNP [dm6]	G	A	5.463e^-4	1	INTRON CG42390
3L	10282688	3L_10282688_SNP [dm3] 3L_10289588_SNP [dm6]	A	G	5.466e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3259374	2L_3259374_SNP [dm3] 2L_3259374_SNP [dm6]	G	A	5.475e^-4	1	INTERGENIC
3R	11228006	3R_11228006_SNP [dm3] 3R_15402284_SNP [dm6]	T	G	5.481e^-4	1	UTR_3_PRIME Rbp DOWNSTREAM CG6125
3R	4577720	3R_4577720_SNP [dm3] 3R_8751998_SNP [dm6]	C	A	5.491e^-4	1	UTR_5_PRIME CG34135 UTR_3_PRIME CG11768 INTRON CG8223
3R	4713803	3R_4713803_DEL [dm3] 3R_8888081_DEL [dm6]	AA	A	5.495e^-4	1	INTRON pyd
2R	13870463	2R_13870463_SNP [dm3] 2R_17982958_SNP [dm6]	G	T	5.507e^-4	1	INTRON dpr13
2R	12861426	2R_12861426_SNP [dm3] 2R_16973921_SNP [dm6]	T	C	5.508e^-4	1	UPSTREAM Cbp53E INTERGENIC
3L	5858543	3L_5858543_SNP [dm3] 3L_5865443_SNP [dm6]	T	A	5.526e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5910591	3R_5910591_SNP [dm3] 3R_10084869_SNP [dm6]	G	A	5.533e^-4	1	INTRON CR45054	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	2438246	2R_2438246_DEL [dm3] 2R_6550741_DEL [dm6]	CTATG	C	5.534e^-4	1	INTRON jing
2L	10912514	2L_10912514_DEL [dm3] 2L_10912514_DEL [dm6]	TCCTAAAGAACAG...	T	5.563e^-4	1	INTERGENIC
2L	12910731	2L_12910731_SNP [dm3] 2L_12910731_SNP [dm6]	G	A	5.569e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4707969	2L_4707969_SNP [dm3] 2L_4707969_SNP [dm6]	G	T	5.570e^-4	1	INTRON CG34351
X	14772732	X_14772732_SNP [dm3] X_14878699_SNP [dm6]	G	A	5.585e^-4	1	INTRON Flo2 & 2 others
3L	669896	3L_669896_SNP [dm3] 3L_669896_SNP [dm6]	G	T	5.585e^-4	1	INTERGENIC
X	20684053	X_20684053_SNP [dm3] X_20813026_SNP [dm6]	G	A	5.614e^-4	1	INTRON shakB
2R	10233159	2R_10233159_SNP [dm3] 2R_14345654_SNP [dm6]	C	A	5.615e^-4	1	INTRON Shroom
2L	6981186	2L_6981186_SNP [dm3] 2L_6981186_SNP [dm6]	G	T	5.615e^-4	1	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3218333	3L_3218333_SNP [dm3] 3L_3218333_SNP [dm6]	C	A	5.617e^-4	1	NON_SYNONYMOUS_CODING CG14967 UPSTREAM CG12034	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8261011	2R_8261011_SNP [dm3] 2R_12373506_SNP [dm6]	T	C	5.621e^-4	1	SYNONYMOUS_CODING CG13160	TF binding site mE1_TFBS_cad
3L	12257016	3L_12257016_SNP [dm3] 3L_12263916_SNP [dm6]	G	A	5.627e^-4	1	INTRON app
2L	2858581	2L_2858581_SNP [dm3] 2L_2858581_SNP [dm6]	G	A	5.641e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16831920	2L_16831920_INS [dm3] 2L_16831920_INS [dm6]	C	TA	5.648e^-4	1	UTR_3_PRIME CG31739 DOWNSTREAM CG13282 & 1 other
3L	3983565	3L_3983565_SNP [dm3] 3L_3983565_SNP [dm6]	G	C	5.660e^-4	1	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8302158	3L_8302158_SNP [dm3] 3L_8309058_SNP [dm6]	C	T	5.660e^-4	1	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18612817	2L_18612817_SNP [dm3] 2L_18612817_SNP [dm6]	T	G	5.663e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	22109998	3R_22109998_SNP [dm3] 3R_26284276_SNP [dm6]	T	A	5.668e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19792770	2L_19792770_SNP [dm3] 2L_19792770_SNP [dm6]	C	T	5.677e^-4	1	UTR_3_PRIME CG10466 UPSTREAM CdGAPr DOWNSTREAM fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	904542	2L_904542_SNP [dm3] 2L_904542_SNP [dm6]	G	T	5.687e^-4	1	DOWNSTREAM CR45261 INTERGENIC
2R	19887853	2R_19887853_SNP [dm3] 2R_24000330_SNP [dm6]	G	C	5.690e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19887870	2R_19887870_SNP [dm3] 2R_24000347_SNP [dm6]	G	A	5.690e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9566619	3L_9566619_SNP [dm3] 3L_9573519_SNP [dm6]	G	T	5.695e^-4	1	INTRON CG42673
2L	17980513	2L_17980513_SNP [dm3] 2L_17980513_SNP [dm6]	A	G	5.696e^-4	1	SYNONYMOUS_CODING btv
2R	15381895	2R_15381895_SNP [dm3] 2R_19494390_SNP [dm6]	T	G	5.698e^-4	1	UTR_3_PRIME hpo DOWNSTREAM Rep
2L	1574674	2L_1574674_SNP [dm3] 2L_1574674_SNP [dm6]	A	G	5.703e^-4	1	INTRON haf
3L	1371252	3L_1371252_SNP [dm3] 3L_1371252_SNP [dm6]	A	G	5.704e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3L	11067933	3L_11067933_SNP [dm3] 3L_11074833_SNP [dm6]	A	G	5.721e^-4	1	START_GAINED CG7839 UTR_5_PRIME CG7839 UPSTREAM l_3_01239
3L	3049887	3L_3049887_SNP [dm3] 3L_3049887_SNP [dm6]	G	A	5.722e^-4	1	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
2L	10247256	2L_10247256_SNP [dm3] 2L_10247256_SNP [dm6]	G	C	5.724e^-4	1	UPSTREAM chico DOWNSTREAM bsk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10944238	3L_10944238_SNP [dm3] 3L_10951138_SNP [dm6]	G	C	5.728e^-4	1	INTERGENIC
X	20146257	X_20146257_INS [dm3] X_20275231_INS [dm6]	A	ACGTAAAC	5.733e^-4	1	INTERGENIC
3L	12630966	3L_12630966_SNP [dm3] 3L_12637866_SNP [dm6]	C	T	5.736e^-4	1	INTRON CR32111
3R	25241375	3R_25241375_SNP [dm3] 3R_29415653_SNP [dm6]	A	T	5.738e^-4	1	INTRON Ptp99A
2L	18012215	2L_18012215_SNP [dm3] 2L_18012215_SNP [dm6]	A	T	5.740e^-4	1	UPSTREAM rdo & 1 other INTERGENIC
2L	8660495	2L_8660495_SNP [dm3] 2L_8660495_SNP [dm6]	T	C	5.758e^-4	1	SYNONYMOUS_CODING Sema-1a
3R	16905820	3R_16905820_SNP [dm3] 3R_21080098_SNP [dm6]	C	A	5.761e^-4	1	INTRON HHEX
X	18460067	X_18460067_SNP [dm3] X_18566034_SNP [dm6]	C	T	5.763e^-4	1	UPSTREAM Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	5780018	2L_5780018_SNP [dm3] 2L_5780018_SNP [dm6]	C	T	5.773e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
3L	21445604	3L_21445604_SNP [dm3] 3L_21452504_SNP [dm6]	G	T	5.783e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12665787	X_12665787_SNP [dm3] X_12771754_SNP [dm6]	T	C	5.795e^-4	1	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3R	21484469	3R_21484469_SNP [dm3] 3R_25658747_SNP [dm6]	G	T	5.795e^-4	1	INTRON Tnks	TF binding site mE1_TFBS_inv
3R	11589707	3R_11589707_DEL [dm3] 3R_15763985_DEL [dm6]	TTGCCATTTTTGCC...	T	5.800e^-4	1	DOWNSTREAM CG12784 INTERGENIC
3L	8722422	3L_8722422_SNP [dm3] 3L_8729322_SNP [dm6]	T	G	5.804e^-4	1	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
2R	3623356	2R_3623356_SNP [dm3] 2R_7735851_SNP [dm6]	C	T	5.805e^-4	1	UPSTREAM CG18812 INTERGENIC
2R	15384745	2R_15384745_SNP [dm3] 2R_19497240_SNP [dm6]	C	T	5.820e^-4	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
X	5009284	X_5009284_SNP [dm3] X_5115251_SNP [dm6]	A	G	5.822e^-4	1	INTRON rg & 1 other
2R	13870479	2R_13870479_DEL [dm3] 2R_17982974_DEL [dm6]	ATACACGACTCAAT...	A	5.838e^-4	1	INTRON dpr13
3R	23474363	3R_23474363_DEL [dm3] 3R_27648641_DEL [dm6]	GACGTTCATATGCAGAGTAA...	G	5.845e^-4	1	CODON_DELETION tau INTRON tau	TF binding site mE1_TFBS_chinmo
3R	18192318	3R_18192318_SNP [dm3] 3R_22366596_SNP [dm6]	C	G	5.847e^-4	1	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	1137606	3L_1137606_SNP [dm3] 3L_1137606_SNP [dm6]	C	T	5.848e^-4	1	INTERGENIC
2R	18934896	2R_18934896_SNP [dm3] 2R_23047373_SNP [dm6]	G	A	5.849e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8466591	2L_8466591_SNP [dm3] 2L_8466591_SNP [dm6]	G	A	5.849e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
X	5464193	X_5464193_SNP [dm3] X_5570160_SNP [dm6]	T	C	5.851e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16848748	X_16848748_DEL [dm3] X_16954715_DEL [dm6]	TT	T	5.853e^-4	1	INTRON RhoGAP15B
2L	4269308	2L_4269308_SNP [dm3] 2L_4269308_SNP [dm6]	T	G	5.868e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10618333	X_10618333_SNP [dm3] X_10724300_SNP [dm6]	C	G	5.873e^-4	1	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
2R	15377860	2R_15377860_SNP [dm3] 2R_19490355_SNP [dm6]	C	T	5.873e^-4	1	SYNONYMOUS_CODING Oseg6	TF binding site mE1_TFBS_inv
3L	5988470	3L_5988470_SNP [dm3] 3L_5995370_SNP [dm6]	A	C	5.891e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14430980	3L_14430980_SNP [dm3] 3L_14437880_SNP [dm6]	A	T	5.892e^-4	1	INTRON bbg
3L	14430993	3L_14430993_DEL [dm3] 3L_14437893_DEL [dm6]	GGG	G	5.892e^-4	1	INTRON bbg
2L	10912511	2L_10912511_SNP [dm3] 2L_10912511_SNP [dm6]	C	G	5.895e^-4	1	INTERGENIC
2L	4381346	2L_4381346_SNP [dm3] 2L_4381346_SNP [dm6]	C	T	5.896e^-4	1	NON_SYNONYMOUS_CODING CG17612 DOWNSTREAM Traf4	TF binding site mE1_TFBS_sens
2R	16128232	2R_16128232_SNP [dm3] 2R_20240727_SNP [dm6]	A	T	5.898e^-4	1	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_chinmo
3L	4213769	3L_4213769_SNP [dm3] 3L_4213769_SNP [dm6]	G	A	5.903e^-4	1	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3L	6011592	3L_6011592_SNP [dm3] 3L_6018492_SNP [dm6]	C	A	5.906e^-4	1	INTRON PVRAP
3R	16467739	3R_16467739_SNP [dm3] 3R_20642017_SNP [dm6]	C	A	5.912e^-4	1	SYNONYMOUS_CODING Lrrk
X	20679168	X_20679168_SNP [dm3] X_20808141_SNP [dm6]	G	A	5.923e^-4	1	INTRON shakB
3L	838699	3L_838699_SNP [dm3] 3L_838699_SNP [dm6]	G	T	5.924e^-4	1	UPSTREAM CG13901 INTRON CG13887	TF binding site mE1_TFBS_inv
2L	5904799	2L_5904799_INS [dm3] 2L_5904799_INS [dm6]	A	AA	5.932e^-4	1	UPSTREAM CG9021 DOWNSTREAM CR43808 INTERGENIC
2L	4371850	2L_4371850_SNP [dm3] 2L_4371850_SNP [dm6]	A	C	5.940e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	8926300	2R_8926300_SNP [dm3] 2R_13038795_SNP [dm6]	G	T	5.946e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15799429	2R_15799429_SNP [dm3] 2R_19911924_SNP [dm6]	C	G	5.968e^-4	1	UPSTREAM CR44573 INTERGENIC
2R	19883730	2R_19883730_SNP [dm3] 2R_23996207_SNP [dm6]	G	A	5.970e^-4	1	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12847068	3R_12847068_SNP [dm3] 3R_17021346_SNP [dm6]	T	A	5.972e^-4	1	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	3214980	X_3214980_SNP [dm3] X_3320947_SNP [dm6]	A	T	5.978e^-4	1	INTRON dnc & 1 other
2L	22423944	2L_22423944_SNP [dm3] 2L_22531212_SNP [dm6]	G	A	5.978e^-4	1	INTERGENIC
3R	9823443	3R_9823443_SNP [dm3] 3R_13997721_SNP [dm6]	A	G	5.983e^-4	1	INTRON rdx
2L	18353897	2L_18353897_SNP [dm3] 2L_18353897_SNP [dm6]	T	C	5.987e^-4	1	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
3L	7739485	3L_7739485_SNP [dm3] 3L_7746385_SNP [dm6]	G	A	5.994e^-4	1	UPSTREAM CG13685 INTRON CG32373
3L	5131550	3L_5131550_SNP [dm3] 3L_5138450_SNP [dm6]	G	A	6.008e^-4	1	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10308214	3L_10308214_SNP [dm3] 3L_10315114_SNP [dm6]	C	T	6.016e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1458722	3L_1458722_SNP [dm3] 3L_1458722_SNP [dm6]	G	A	6.048e^-4	1	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25350321	3R_25350321_SNP [dm3] 3R_29524599_SNP [dm6]	G	A	6.055e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14772789	X_14772789_DEL [dm3] X_14878756_DEL [dm6]	TC	T	6.066e^-4	1	INTRON Flo2 & 2 others
2R	8253041	2R_8253041_SNP [dm3] 2R_12365536_SNP [dm6]	C	T	6.067e^-4	1	EXON CR33013
3L	12337899	3L_12337899_SNP [dm3] 3L_12344799_SNP [dm6]	C	T	6.074e^-4	1	INTRON CrzR
3L	2505687	3L_2505687_SNP [dm3] 3L_2505687_SNP [dm6]	T	C	6.076e^-4	1	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18569383	2L_18569383_SNP [dm3] 2L_18569383_SNP [dm6]	A	T	6.076e^-4	1	INTRON Pde11
X	5002173	X_5002173_SNP [dm3] X_5108140_SNP [dm6]	G	T	6.078e^-4	1	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

mn_ChillComaRec phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results