DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.916e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2395 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19030449	3R_19030449_INS [dm3] 3R_23204727_INS [dm6]	G	GTT	3.002e^-7	0.521	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	8.303e^-7	0.521	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2R	19972748	2R_19972748_SNP [dm3] 2R_24085225_SNP [dm6]	G	A	1.545e^-6	0.521	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
3L	4871873	3L_4871873_DEL [dm3] 3L_4871873_DEL [dm6]	TC	T	1.596e^-6	0.521	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	1.634e^-6	0.521	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4871845	3L_4871845_SNP [dm3] 3L_4871845_SNP [dm6]	G	A	1.897e^-6	0.521	INTRON CG17150	TF binding site mE1_TFBS_HSA
2R	19982478	2R_19982478_SNP [dm3] 2R_24094955_SNP [dm6]	C	A	1.944e^-6	0.521	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19030580	3R_19030580_INS [dm3] 3R_23204858_INS [dm6]	A	AT	2.694e^-6	0.551	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	4871912	3L_4871912_SNP [dm3] 3L_4871912_SNP [dm6]	A	G	2.912e^-6	0.551	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	19030560	3R_19030560_SNP [dm3] 3R_23204838_SNP [dm6]	T	G	3.037e^-6	0.551	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	15171675	3L_15171675_SNP [dm3] 3L_15178575_SNP [dm6]	G	A	3.861e^-6	0.551	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21030752	3R_21030752_SNP [dm3] 3R_25205030_SNP [dm6]	A	T	4.245e^-6	0.551	INTRON CG13654 & 1 other
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	4.483e^-6	0.551	INTRON CG17150
3R	19030611	3R_19030611_SNP [dm3] 3R_23204889_SNP [dm6]	T	C	4.562e^-6	0.551	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	18972435	2R_18972435_SNP [dm3] 2R_23084912_SNP [dm6]	T	A	5.064e^-6	0.551	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19975004	2R_19975004_SNP [dm3] 2R_24087481_SNP [dm6]	G	C	5.362e^-6	0.551	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3987713	3L_3987713_SNP [dm3] 3L_3987713_SNP [dm6]	C	T	5.400e^-6	0.551	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19030584	3R_19030584_SNP [dm3] 3R_23204862_SNP [dm6]	C	T	6.062e^-6	0.551	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	19982493	2R_19982493_SNP [dm3] 2R_24094970_SNP [dm6]	T	C	6.257e^-6	0.551	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6452220	X_6452220_SNP [dm3] X_6558187_SNP [dm6]	T	C	7.511e^-6	0.551	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	4871887	3L_4871887_SNP [dm3] 3L_4871887_SNP [dm6]	T	C	7.840e^-6	0.551	INTRON CG17150	TF binding site mE1_TFBS_HSA
2L	20437146	2L_20437146_SNP [dm3] 2L_20437146_SNP [dm6]	G	A	8.257e^-6	0.551	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7392805	2R_7392805_SNP [dm3] 2R_11505300_SNP [dm6]	T	A	8.499e^-6	0.551	INTRON inv
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	9.131e^-6	0.551	DOWNSTREAM CG9928 INTERGENIC
3R	11515362	3R_11515362_SNP [dm3] 3R_15689640_SNP [dm6]	C	T	9.485e^-6	0.551	UTR_3_PRIME pxb
2R	18670641	2R_18670641_DEL [dm3] 2R_22783136_DEL [dm6]	AAG	A	1.000e^-5	0.551	INTRON CG42260
2L	4956395	2L_4956395_SNP [dm3] 2L_4956395_SNP [dm6]	A	G	1.020e^-5	0.551	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10371209	3R_10371209_SNP [dm3] 3R_14545487_SNP [dm6]	T	A	1.067e^-5	0.551	INTRON Pde6
2L	22307250	2L_22307250_SNP [dm3] 2L_22307250_SNP [dm6]	T	G	1.068e^-5	0.551	INTERGENIC
2L	20403587	2L_20403587_SNP [dm3] 2L_20403587_SNP [dm6]	G	T	1.072e^-5	0.551	INTRON CG10947
2L	20343221	2L_20343221_SNP [dm3] 2L_20343221_SNP [dm6]	A	T	1.107e^-5	0.551	INTRON spir
3R	4723832	3R_4723832_DEL [dm3] 3R_8898110_DEL [dm6]	TCTGCAAATCACAAT...	T	1.115e^-5	0.551	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3L	4880296	3L_4880296_SNP [dm3] 3L_4880296_SNP [dm6]	T	C	1.133e^-5	0.551	INTRON CG17150
X	18245824	X_18245824_INS [dm3] X_18351791_INS [dm6]	C	AGA	1.141e^-5	0.551	INTRON CG6123
3L	4871832	3L_4871832_SNP [dm3] 3L_4871832_SNP [dm6]	T	G	1.157e^-5	0.551	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	19030577	3R_19030577_SNP [dm3] 3R_23204855_SNP [dm6]	A	C	1.167e^-5	0.551	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	21030790	3R_21030790_SNP [dm3] 3R_25205068_SNP [dm6]	G	A	1.201e^-5	0.551	INTRON CG13654 & 1 other
3L	17032067	3L_17032067_SNP [dm3] 3L_17038967_SNP [dm6]	T	C	1.270e^-5	0.551	INTRON scaf6	TF binding site mE1_TFBS_cad
2L	4956360	2L_4956360_SNP [dm3] 2L_4956360_SNP [dm6]	C	T	1.272e^-5	0.551	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11487768	3R_11487768_SNP [dm3] 3R_15662046_SNP [dm6]	T	G	1.279e^-5	0.551	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	11839461	3L_11839461_SNP [dm3] 3L_11846361_SNP [dm6]	C	G	1.303e^-5	0.551	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	10454556	3L_10454556_SNP [dm3] 3L_10461456_SNP [dm6]	T	A	1.307e^-5	0.551	NON_SYNONYMOUS_CODING Gem3
3R	10156929	3R_10156929_SNP [dm3] 3R_14331207_SNP [dm6]	C	T	1.378e^-5	0.551	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156930	3R_10156930_SNP [dm3] 3R_14331208_SNP [dm6]	C	A	1.378e^-5	0.551	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4956397	2L_4956397_DEL [dm3] 2L_4956397_DEL [dm6]	CAT	C	1.379e^-5	0.551	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1935439	3L_1935439_SNP [dm3] 3L_1935439_SNP [dm6]	G	A	1.422e^-5	0.551	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_sens
3L	4872644	3L_4872644_SNP [dm3] 3L_4872644_SNP [dm6]	C	T	1.452e^-5	0.551	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18670862	2R_18670862_SNP [dm3] 2R_22783357_SNP [dm6]	C	A	1.530e^-5	0.551	UPSTREAM CG30270 INTRON CG42260
3L	7769852	3L_7769852_SNP [dm3] 3L_7776752_SNP [dm6]	A	G	1.551e^-5	0.551	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	10156944	3R_10156944_SNP [dm3] 3R_14331222_SNP [dm6]	G	C	1.560e^-5	0.551	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156910	3R_10156910_INS [dm3] 3R_14331188_INS [dm6]	T	TGTAT	1.593e^-5	0.551	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19984116	2R_19984116_SNP [dm3] 2R_24096593_SNP [dm6]	G	T	1.627e^-5	0.551	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18972454	2R_18972454_SNP [dm3] 2R_23084931_SNP [dm6]	G	A	1.630e^-5	0.551	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19974129	2R_19974129_SNP [dm3] 2R_24086606_SNP [dm6]	G	T	1.664e^-5	0.551	UTR_5_PRIME snama DOWNSTREAM CG16786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974764	2R_19974764_SNP [dm3] 2R_24087241_SNP [dm6]	T	C	1.664e^-5	0.551	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13169991	3R_13169991_SNP [dm3] 3R_17344269_SNP [dm6]	G	A	1.709e^-5	0.551	INTRON beat-IIa
X	18245828	X_18245828_SNP [dm3] X_18351795_SNP [dm6]	T	C	1.743e^-5	0.551	INTRON CG6123
3L	4871889	3L_4871889_SNP [dm3] 3L_4871889_SNP [dm6]	T	C	1.749e^-5	0.551	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	10156937	3R_10156937_SNP [dm3] 3R_14331215_SNP [dm6]	G	A	1.759e^-5	0.551	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9858685	X_9858685_SNP [dm3] X_9964652_SNP [dm6]	C	T	1.795e^-5	0.551	SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
2R	18972461	2R_18972461_SNP [dm3] 2R_23084938_SNP [dm6]	A	G	1.802e^-5	0.551	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13263711	2L_13263711_SNP [dm3] 2L_13263711_SNP [dm6]	C	T	1.821e^-5	0.551	INTRON CG44085
3R	14338370	3R_14338370_SNP [dm3] 3R_18512648_SNP [dm6]	G	C	1.860e^-5	0.554	INTRON fru
3R	10156932	3R_10156932_INS [dm3] 3R_14331210_INS [dm6]	G	GTAT	1.957e^-5	0.555	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156939	3R_10156939_INS [dm3] 3R_14331217_INS [dm6]	A	ATGTACATATATCATTTTTT...	2.063e^-5	0.555	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156950	3R_10156950_SNP [dm3] 3R_14331228_SNP [dm6]	G	C	2.063e^-5	0.555	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156952	3R_10156952_INS [dm3] 3R_14331230_INS [dm6]	G	GATTAAAT	2.063e^-5	0.555	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156948	3R_10156948_SNP [dm3] 3R_14331226_SNP [dm6]	C	T	2.084e^-5	0.555	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4872506	3L_4872506_SNP [dm3] 3L_4872506_SNP [dm6]	A	G	2.092e^-5	0.555	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20268713	2L_20268713_SNP [dm3] 2L_20268713_SNP [dm6]	T	C	2.098e^-5	0.555	INTERGENIC
2L	20132606	2L_20132606_SNP [dm3] 2L_20132606_SNP [dm6]	C	A	2.100e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20699174	3R_20699174_SNP [dm3] 3R_24873452_SNP [dm6]	T	C	2.209e^-5	0.57	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
3R	24978494	3R_24978494_SNP [dm3] 3R_29152772_SNP [dm6]	G	A	2.219e^-5	0.57	SYNONYMOUS_CODING Slbp UPSTREAM ligatin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	620938	3R_620938_DEL [dm3] 3R_4795216_DEL [dm6]	TT	T	2.283e^-5	0.577	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11487767	3R_11487767_SNP [dm3] 3R_15662045_SNP [dm6]	C	A	2.307e^-5	0.577	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	9251875	3L_9251875_SNP [dm3] 3L_9258775_SNP [dm6]	T	C	2.442e^-5	0.602	INTRON GluRIB
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	2.475e^-5	0.602	SYNONYMOUS_CODING CG16798
2R	19996423	2R_19996423_SNP [dm3] 2R_24108900_SNP [dm6]	G	T	2.515e^-5	0.602	SYNONYMOUS_CODING CG4049
3R	26042222	3R_26042222_SNP [dm3] 3R_30216500_SNP [dm6]	T	C	2.579e^-5	0.602	UTR_5_PRIME CecC
2L	20350998	2L_20350998_SNP [dm3] 2L_20350998_SNP [dm6]	C	A	2.581e^-5	0.602	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
3R	620936	3R_620936_SNP [dm3] 3R_4795214_SNP [dm6]	G	A	2.601e^-5	0.602	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20437153	2L_20437153_SNP [dm3] 2L_20437153_SNP [dm6]	C	G	2.666e^-5	0.608	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	620935	3R_620935_SNP [dm3] 3R_4795213_SNP [dm6]	A	C	2.699e^-5	0.608	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	2.768e^-5	0.608	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	19030436	3R_19030436_SNP [dm3] 3R_23204714_SNP [dm6]	T	C	2.778e^-5	0.608	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	6307933	3L_6307933_SNP [dm3] 3L_6314833_SNP [dm6]	T	A	2.899e^-5	0.608	INTERGENIC
2L	15386524	2L_15386524_SNP [dm3] 2L_15386524_SNP [dm6]	C	G	2.900e^-5	0.608	INTERGENIC
3R	18945930	3R_18945930_SNP [dm3] 3R_23120208_SNP [dm6]	C	T	2.915e^-5	0.608	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	10156955	3R_10156955_SNP [dm3] 3R_14331233_SNP [dm6]	G	A	2.917e^-5	0.608	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12460216	2R_12460216_INS [dm3] 2R_16572711_INS [dm6]	A	AA	2.930e^-5	0.608	INTRON CG4927
3L	3702945	3L_3702945_SNP [dm3] 3L_3702945_SNP [dm6]	C	T	3.049e^-5	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19976766	2R_19976766_SNP [dm3] 2R_24089243_SNP [dm6]	A	G	3.084e^-5	0.608	NON_SYNONYMOUS_CODING snama
2R	7392807	2R_7392807_INS [dm3] 2R_11505302_INS [dm6]	T	TT	3.102e^-5	0.608	INTRON inv
2L	13142029	2L_13142029_SNP [dm3] 2L_13142029_SNP [dm6]	T	C	3.127e^-5	0.608	DOWNSTREAM CG9928 INTERGENIC
3R	10156938	3R_10156938_SNP [dm3] 3R_14331216_SNP [dm6]	A	C	3.145e^-5	0.608	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6857972	3R_6857972_SNP [dm3] 3R_11032250_SNP [dm6]	A	G	3.155e^-5	0.608	INTRON CG34114
3L	11839688	3L_11839688_SNP [dm3] 3L_11846588_SNP [dm6]	G	A	3.172e^-5	0.608	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	3643803	X_3643803_SNP [dm3] X_3749770_SNP [dm6]	T	C	3.179e^-5	0.608	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17769455	3R_17769455_SNP [dm3] 3R_21943733_SNP [dm6]	A	C	3.315e^-5	0.612	INTERGENIC
3R	11529801	3R_11529801_SNP [dm3] 3R_15704079_SNP [dm6]	T	C	3.315e^-5	0.612	UPSTREAM CG5404 INTERGENIC
3R	6856604	3R_6856604_SNP [dm3] 3R_11030882_SNP [dm6]	T	A	3.325e^-5	0.612	INTRON CG34114
3L	11897267	3L_11897267_SNP [dm3] 3L_11904167_SNP [dm6]	G	T	3.327e^-5	0.612	INTRON CG44837
3L	2564275	3L_2564275_SNP [dm3] 3L_2564275_SNP [dm6]	T	C	3.411e^-5	0.619	INTRON msn
2R	4006930	2R_4006930_SNP [dm3] 2R_8119425_SNP [dm6]	T	C	3.461e^-5	0.619	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
3R	12396346	3R_12396346_SNP [dm3] 3R_16570624_SNP [dm6]	C	A	3.465e^-5	0.619	UTR_3_PRIME CG42342 UPSTREAM CG14891 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23997363	3R_23997363_SNP [dm3] 3R_28171641_SNP [dm6]	G	T	3.496e^-5	0.619	INTRON CG34354
3L	569471	3L_569471_SNP [dm3] 3L_569471_SNP [dm6]	G	A	3.567e^-5	0.625	INTRON hipk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10739474	3L_10739474_SNP [dm3] 3L_10746374_SNP [dm6]	A	T	3.789e^-5	0.633	INTERGENIC
2R	7693480	2R_7693480_SNP [dm3] 2R_11805975_SNP [dm6]	C	A	3.817e^-5	0.633	INTRON ths
3R	11508626	3R_11508626_SNP [dm3] 3R_15682904_SNP [dm6]	C	T	3.828e^-5	0.633	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25531759	3R_25531759_SNP [dm3] 3R_29706037_SNP [dm6]	T	A	3.876e^-5	0.633	INTERGENIC
3L	4873509	3L_4873509_SNP [dm3] 3L_4873509_SNP [dm6]	A	T	3.893e^-5	0.633	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12633600	2R_12633600_SNP [dm3] 2R_16746095_SNP [dm6]	G	T	3.927e^-5	0.633	UPSTREAM Sfp53D INTRON CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1532940	X_1532940_SNP [dm3] X_1638907_SNP [dm6]	C	T	3.942e^-5	0.633	INTRON Mur2B & 1 other
X	9858684	X_9858684_SNP [dm3] X_9964651_SNP [dm6]	C	T	4.022e^-5	0.633	NON_SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
3R	8099075	3R_8099075_SNP [dm3] 3R_12273353_SNP [dm6]	T	A	4.058e^-5	0.633	SYNONYMOUS_CODING Sfp87B INTRON svp
2R	4583549	2R_4583549_SNP [dm3] 2R_8696044_SNP [dm6]	A	G	4.096e^-5	0.633	UPSTREAM CG8738 & 1 other INTRON CG8586
2R	4006830	2R_4006830_SNP [dm3] 2R_8119325_SNP [dm6]	G	A	4.158e^-5	0.633	SPLICE_SITE_REGION Asap SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
3R	13913071	3R_13913071_SNP [dm3] 3R_18087349_SNP [dm6]	A	G	4.171e^-5	0.633	INTERGENIC
3R	10156943	3R_10156943_SNP [dm3] 3R_14331221_SNP [dm6]	C	A	4.193e^-5	0.633	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12633477	2R_12633477_SNP [dm3] 2R_16745972_SNP [dm6]	G	A	4.207e^-5	0.633	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11529809	3R_11529809_SNP [dm3] 3R_15704087_SNP [dm6]	C	T	4.228e^-5	0.633	UPSTREAM CG5404 INTERGENIC
2L	18936854	2L_18936854_DEL [dm3] 2L_18936854_DEL [dm6]	CC	C	4.234e^-5	0.633	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12313523	3L_12313523_SNP [dm3] 3L_12320423_SNP [dm6]	A	G	4.240e^-5	0.633	INTERGENIC
3R	4723105	3R_4723105_SNP [dm3] 3R_8897383_SNP [dm6]	T	A	4.270e^-5	0.633	INTRON pyd
2L	22249105	2L_22249105_DEL [dm3] 2L_22249105_DEL [dm6]	AGTTTCA	G	4.325e^-5	0.633	UPSTREAM Tif-IA INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19647533	2L_19647533_DEL [dm3] 2L_19647533_DEL [dm6]	TAT	T	4.336e^-5	0.633	INTRON Lar
2R	14322783	2R_14322783_SNP [dm3] 2R_18435278_SNP [dm6]	G	T	4.351e^-5	0.633	INTRON CG30118	TF binding site BDTNP1_TFBS_twi
3L	7630115	3L_7630115_SNP [dm3] 3L_7637015_SNP [dm6]	A	T	4.351e^-5	0.633	SYNONYMOUS_CODING CG33275
X	18246157	X_18246157_SNP [dm3] X_18352124_SNP [dm6]	A	T	4.476e^-5	0.633	INTRON CG6123
2R	17927618	2R_17927618_DEL [dm3] 2R_22040113_DEL [dm6]	GACAGC	G	4.507e^-5	0.633	UPSTREAM CG34370 INTERGENIC
3L	7629324	3L_7629324_SNP [dm3] 3L_7636224_SNP [dm6]	G	C	4.549e^-5	0.633	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7769793	3L_7769793_SNP [dm3] 3L_7776693_SNP [dm6]	G	T	4.596e^-5	0.633	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3L	7629777	3L_7629777_SNP [dm3] 3L_7636677_SNP [dm6]	C	G	4.616e^-5	0.633	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24931932	3R_24931932_SNP [dm3] 3R_29106210_SNP [dm6]	T	G	4.661e^-5	0.633	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7204750	2R_7204750_SNP [dm3] 2R_11317245_SNP [dm6]	T	C	4.678e^-5	0.633	INTRON nompA
3R	10156946	3R_10156946_SNP [dm3] 3R_14331224_SNP [dm6]	T	A	4.687e^-5	0.633	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18126974	2R_18126974_SNP [dm3] 2R_22239469_SNP [dm6]	G	A	4.718e^-5	0.633	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15858356	2R_15858356_SNP [dm3] 2R_19970851_SNP [dm6]	C	A	4.737e^-5	0.633	INTERGENIC
X	19787022	X_19787022_SNP [dm3] X_19892989_SNP [dm6]	A	C	4.757e^-5	0.633	UPSTREAM Hers INTRON Hers
2R	7219832	2R_7219832_SNP [dm3] 2R_11332327_SNP [dm6]	G	T	4.821e^-5	0.633	SYNONYMOUS_CODING sha
2L	20067542	2L_20067542_SNP [dm3] 2L_20067542_SNP [dm6]	G	A	4.861e^-5	0.633	INTRON bwa	TF binding site BDTNP1_TFBS_da
3L	4872620	3L_4872620_SNP [dm3] 3L_4872620_SNP [dm6]	T	C	4.888e^-5	0.633	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9858647	X_9858647_SNP [dm3] X_9964614_SNP [dm6]	T	A	4.931e^-5	0.633	UPSTREAM CG1889 INTRON CG1791
2R	19984341	2R_19984341_SNP [dm3] 2R_24096818_SNP [dm6]	C	T	4.961e^-5	0.633	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12313620	3L_12313620_INS [dm3] 3L_12320520_INS [dm6]	T	TTAA	4.978e^-5	0.633	INTERGENIC
3L	12313622	3L_12313622_SNP [dm3] 3L_12320522_SNP [dm6]	T	A	4.978e^-5	0.633	INTERGENIC
2L	20135767	2L_20135767_SNP [dm3] 2L_20135767_SNP [dm6]	C	G	5.014e^-5	0.633	UPSTREAM CG10651 INTERGENIC
3L	9251882	3L_9251882_SNP [dm3] 3L_9258782_SNP [dm6]	A	G	5.030e^-5	0.633	INTRON GluRIB
2R	7693521	2R_7693521_DEL [dm3] 2R_11806016_DEL [dm6]	CA	C	5.092e^-5	0.633	INTRON ths
3L	16339657	3L_16339657_SNP [dm3] 3L_16346557_SNP [dm6]	A	T	5.188e^-5	0.633	INTRON CG33257
3L	11839682	3L_11839682_SNP [dm3] 3L_11846582_SNP [dm6]	C	A	5.196e^-5	0.633	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	18409682	3L_18409682_SNP [dm3] 3L_18416582_SNP [dm6]	T	G	5.240e^-5	0.633	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22181142	X_22181142_SNP [dm3] X_22779306_SNP [dm6]	T	C	5.280e^-5	0.633	INTRON CR44997	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3702859	3L_3702859_SNP [dm3] 3L_3702859_SNP [dm6]	T	A	5.284e^-5	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14757111	2L_14757111_SNP [dm3] 2L_14757111_SNP [dm6]	T	C	5.286e^-5	0.633	INTERGENIC
3L	4871916	3L_4871916_SNP [dm3] 3L_4871916_SNP [dm6]	A	G	5.296e^-5	0.633	INTRON CG17150	TF binding site mE1_TFBS_HSA
2R	12060631	2R_12060631_SNP [dm3] 2R_16173126_SNP [dm6]	G	T	5.391e^-5	0.638	NON_SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	7693525	2R_7693525_SNP [dm3] 2R_11806020_SNP [dm6]	A	G	5.619e^-5	0.638	INTRON ths
3R	10697615	3R_10697615_SNP [dm3] 3R_14871893_SNP [dm6]	A	T	5.625e^-5	0.638	INTRON btsz
3L	12830610	3L_12830610_SNP [dm3] 3L_12837510_SNP [dm6]	A	T	5.679e^-5	0.638	INTRON CG10960
3R	19030623	3R_19030623_SNP [dm3] 3R_23204901_SNP [dm6]	C	A	5.713e^-5	0.638	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	5361216	3L_5361216_SNP [dm3] 3L_5368116_SNP [dm6]	T	C	5.732e^-5	0.638	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
2L	14757112	2L_14757112_SNP [dm3] 2L_14757112_SNP [dm6]	G	A	5.750e^-5	0.638	INTERGENIC
3R	19023588	3R_19023588_INS [dm3] 3R_23197866_INS [dm6]	T	TCTACGGTTCTACGG...	5.796e^-5	0.638	INTRON cnc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	14153993	2R_14153993_SNP [dm3] 2R_18266488_SNP [dm6]	G	C	5.797e^-5	0.638	INTERGENIC
2R	16952034	2R_16952034_SNP [dm3] 2R_21064529_SNP [dm6]	C	T	5.810e^-5	0.638	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht4
2L	4955814	2L_4955814_SNP [dm3] 2L_4955814_SNP [dm6]	A	T	5.836e^-5	0.638	NON_SYNONYMOUS_CODING Marcal1 UPSTREAM Jon25Bi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	5.880e^-5	0.638	INTRON rk
2R	19983960	2R_19983960_SNP [dm3] 2R_24096437_SNP [dm6]	G	A	5.888e^-5	0.638	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20139544	2R_20139544_SNP [dm3] 2R_24252021_SNP [dm6]	A	C	5.895e^-5	0.638	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	13805628	3R_13805628_SNP [dm3] 3R_17979906_SNP [dm6]	C	T	5.957e^-5	0.638	INTRON cpo
3L	22171534	3L_22171534_DEL [dm3] 3L_22178434_DEL [dm6]	GTT	G	5.976e^-5	0.638	INTRON olf413
3L	3439399	3L_3439399_SNP [dm3] 3L_3439399_SNP [dm6]	T	C	6.021e^-5	0.638	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	20628682	2L_20628682_SNP [dm3] 2L_20628682_SNP [dm6]	G	T	6.022e^-5	0.638	INTERGENIC
2R	20138957	2R_20138957_SNP [dm3] 2R_24251434_SNP [dm6]	A	C	6.034e^-5	0.638	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3L	4872896	3L_4872896_SNP [dm3] 3L_4872896_SNP [dm6]	C	T	6.044e^-5	0.638	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4869918	3L_4869918_SNP [dm3] 3L_4869918_SNP [dm6]	C	T	6.101e^-5	0.638	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	4872356	3L_4872356_SNP [dm3] 3L_4872356_SNP [dm6]	G	A	6.171e^-5	0.638	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22296953	2L_22296953_DEL [dm3] 2L_22296953_DEL [dm6]	TATTATTTATTATTTTATTG...	C	6.219e^-5	0.638	INTERGENIC	transposable element FlyBase
3L	14540543	3L_14540543_SNP [dm3] 3L_14547443_SNP [dm6]	C	G	6.267e^-5	0.638	SYNONYMOUS_CODING CG9238 UTR_5_PRIME CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16321573	2L_16321573_SNP [dm3] 2L_16321573_SNP [dm6]	G	A	6.340e^-5	0.638	INTRON cact	TF binding site BDTNP1_TFBS_dl
2R	14686962	2R_14686962_SNP [dm3] 2R_18799457_SNP [dm6]	G	C	6.378e^-5	0.638	INTRON l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16201577	3L_16201577_SNP [dm3] 3L_16208477_SNP [dm6]	A	G	6.399e^-5	0.638	INTERGENIC
2L	20262953	2L_20262953_SNP [dm3] 2L_20262953_SNP [dm6]	T	A	6.441e^-5	0.638	DOWNSTREAM CG17570 INTERGENIC
2L	22306565	2L_22306565_SNP [dm3] 2L_22306565_SNP [dm6]	T	A	6.448e^-5	0.638	INTERGENIC
3R	11529074	3R_11529074_SNP [dm3] 3R_15703352_SNP [dm6]	A	C	6.460e^-5	0.638	INTERGENIC
3R	6849559	3R_6849559_SNP [dm3] 3R_11023837_SNP [dm6]	T	C	6.477e^-5	0.638	INTRON CG34114
2R	7392814	2R_7392814_SNP [dm3] 2R_11505309_SNP [dm6]	C	T	6.567e^-5	0.638	INTRON inv
3L	14372680	3L_14372680_SNP [dm3] 3L_14379580_SNP [dm6]	T	C	6.576e^-5	0.638	INTERGENIC
3L	12822022	3L_12822022_SNP [dm3] 3L_12828922_SNP [dm6]	T	G	6.630e^-5	0.638	INTRON CG10960
3L	10289430	3L_10289430_SNP [dm3] 3L_10296330_SNP [dm6]	T	C	6.729e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19976832	2R_19976832_SNP [dm3] 2R_24089309_SNP [dm6]	G	A	6.792e^-5	0.638	UTR_3_PRIME snama INTRON snama
2L	20141079	2L_20141079_SNP [dm3] 2L_20141079_SNP [dm6]	T	A	6.822e^-5	0.638	INTERGENIC
3L	12821141	3L_12821141_SNP [dm3] 3L_12828041_SNP [dm6]	T	G	6.852e^-5	0.638	UPSTREAM CG10960 INTRON CG10960
3L	12824678	3L_12824678_SNP [dm3] 3L_12831578_SNP [dm6]	A	T	6.852e^-5	0.638	INTRON CG10960
2R	19500357	2R_19500357_SNP [dm3] 2R_23612834_SNP [dm6]	G	A	6.856e^-5	0.638	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12331677	X_12331677_SNP [dm3] X_12437644_SNP [dm6]	A	T	6.967e^-5	0.638	INTRON Pkcdelta
2R	5020785	2R_5020785_SNP [dm3] 2R_9133280_SNP [dm6]	C	T	7.024e^-5	0.638	NON_SYNONYMOUS_CODING Hydr1 UPSTREAM Hydr1 INTRON Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
X	18240946	X_18240946_SNP [dm3] X_18346913_SNP [dm6]	T	A	7.025e^-5	0.638	INTRON CG6123
3L	6874385	3L_6874385_SNP [dm3] 3L_6881285_SNP [dm6]	T	C	7.043e^-5	0.638	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	16599739	2L_16599739_SNP [dm3] 2L_16599739_SNP [dm6]	A	C	7.118e^-5	0.638	INTRON CG42389
3L	5917903	3L_5917903_SNP [dm3] 3L_5924803_SNP [dm6]	T	A	7.125e^-5	0.638	INTRON Vap-33B
2L	20341184	2L_20341184_DEL [dm3] 2L_20341184_DEL [dm6]	CAACTGGC	C	7.176e^-5	0.638	UPSTREAM spir INTRON spir
3L	569491	3L_569491_SNP [dm3] 3L_569491_SNP [dm6]	C	A	7.183e^-5	0.638	INTRON hipk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	8029126	X_8029126_SNP [dm3] X_8135093_SNP [dm6]	G	C	7.200e^-5	0.638	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
3R	19030437	3R_19030437_SNP [dm3] 3R_23204715_SNP [dm6]	C	T	7.247e^-5	0.638	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	13906882	3R_13906882_SNP [dm3] 3R_18081160_SNP [dm6]	C	T	7.297e^-5	0.638	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19635301	2L_19635301_INS [dm3] 2L_19635301_INS [dm6]	T	TAT	7.303e^-5	0.638	INTRON Lar
2L	20423036	2L_20423036_DEL [dm3] 2L_20423036_DEL [dm6]	GG	G	7.338e^-5	0.638	DOWNSTREAM snoRNA:Psi18S-525j & 2 others INTERGENIC
2L	20126742	2L_20126742_INS [dm3] 2L_20126742_INS [dm6]	A	AA	7.401e^-5	0.638	INTERGENIC
3L	3350287	3L_3350287_SNP [dm3] 3L_3350287_SNP [dm6]	C	T	7.531e^-5	0.638	SYNONYMOUS_CODING kst INTRON kst	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20289085	2L_20289085_SNP [dm3] 2L_20289085_SNP [dm6]	G	A	7.545e^-5	0.638	INTERGENIC
3L	12822093	3L_12822093_SNP [dm3] 3L_12828993_SNP [dm6]	T	C	7.551e^-5	0.638	INTRON CG10960
X	7576375	X_7576375_SNP [dm3] X_7682342_SNP [dm6]	G	A	7.599e^-5	0.638	UTR_3_PRIME CHES-1-like
3L	3866234	3L_3866234_SNP [dm3] 3L_3866234_SNP [dm6]	G	T	7.614e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4188374	3L_4188374_SNP [dm3] 3L_4188374_SNP [dm6]	T	A	7.637e^-5	0.638	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	575897	3L_575897_SNP [dm3] 3L_575897_SNP [dm6]	T	C	7.662e^-5	0.638	UTR_3_PRIME hipk
3R	11529941	3R_11529941_SNP [dm3] 3R_15704219_SNP [dm6]	T	A	7.698e^-5	0.638	UPSTREAM CG5404 INTERGENIC
2L	20243884	2L_20243884_SNP [dm3] 2L_20243884_SNP [dm6]	C	G	7.721e^-5	0.638	INTERGENIC
2R	15824896	2R_15824896_SNP [dm3] 2R_19937391_SNP [dm6]	C	T	7.827e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16900000	2R_16900000_SNP [dm3] 2R_21012495_SNP [dm6]	C	T	7.959e^-5	0.638	NON_SYNONYMOUS_CODING CG9346 UPSTREAM grau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	5078130	2R_5078130_SNP [dm3] 2R_9190625_SNP [dm6]	T	C	7.960e^-5	0.638	UPSTREAM CG8026 INTRON CG8026 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18241652	X_18241652_SNP [dm3] X_18347619_SNP [dm6]	A	T	7.983e^-5	0.638	INTRON CG6123
2L	20379286	2L_20379286_SNP [dm3] 2L_20379286_SNP [dm6]	G	T	7.987e^-5	0.638	NON_SYNONYMOUS_CODING CG16798
3L	9744744	3L_9744744_SNP [dm3] 3L_9751644_SNP [dm6]	C	T	7.995e^-5	0.638	UPSTREAM CG42268 INTRON CG42268	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	3790477	3R_3790477_SNP [dm3] 3R_7964755_SNP [dm6]	G	A	8.036e^-5	0.638	INTRON dsx
3R	3790480	3R_3790480_SNP [dm3] 3R_7964758_SNP [dm6]	G	A	8.036e^-5	0.638	INTRON dsx
2L	4275140	2L_4275140_SNP [dm3] 2L_4275140_SNP [dm6]	C	T	8.051e^-5	0.638	INTERGENIC
2L	20264644	2L_20264644_INS [dm3] 2L_20264644_INS [dm6]	T	TGTTGGAATATACTATTCAA...	8.085e^-5	0.638	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13142031	2L_13142031_SNP [dm3] 2L_13142031_SNP [dm6]	C	T	8.155e^-5	0.638	DOWNSTREAM CG9928 INTERGENIC
3R	18211568	3R_18211568_SNP [dm3] 3R_22385846_SNP [dm6]	A	G	8.156e^-5	0.638	NON_SYNONYMOUS_CODING CG43343 DOWNSTREAM CG5379	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13193868	3L_13193868_SNP [dm3] 3L_13200768_SNP [dm6]	G	C	8.163e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9250715	3L_9250715_SNP [dm3] 3L_9257615_SNP [dm6]	G	A	8.208e^-5	0.638	INTRON GluRIB
3L	12313611	3L_12313611_SNP [dm3] 3L_12320511_SNP [dm6]	A	C	8.241e^-5	0.638	INTERGENIC
X	18241689	X_18241689_SNP [dm3] X_18347656_SNP [dm6]	G	A	8.242e^-5	0.638	INTRON CG6123
3L	10656326	3L_10656326_SNP [dm3] 3L_10663226_SNP [dm6]	G	A	8.281e^-5	0.638	UPSTREAM CG32068 DOWNSTREAM CG8003 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	4188235	3L_4188235_SNP [dm3] 3L_4188235_SNP [dm6]	T	C	8.307e^-5	0.638	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4188315	3L_4188315_SNP [dm3] 3L_4188315_SNP [dm6]	G	A	8.307e^-5	0.638	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10656123	3L_10656123_SNP [dm3] 3L_10663023_SNP [dm6]	T	A	8.414e^-5	0.638	UTR_3_PRIME CG8003 UPSTREAM CG32068 DOWNSTREAM CG8003	TF binding site BDTNP1_TFBS_dl
2L	13142363	2L_13142363_SNP [dm3] 2L_13142363_SNP [dm6]	G	A	8.426e^-5	0.638	DOWNSTREAM CG9928 & 1 other INTERGENIC
X	9240805	X_9240805_SNP [dm3] X_9346772_SNP [dm6]	C	G	8.479e^-5	0.638	INTRON CG34449
2L	3391042	2L_3391042_SNP [dm3] 2L_3391042_SNP [dm6]	G	A	8.514e^-5	0.638	INTERGENIC
3L	11839670	3L_11839670_SNP [dm3] 3L_11846570_SNP [dm6]	C	T	8.609e^-5	0.638	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	25531736	3R_25531736_SNP [dm3] 3R_29706014_SNP [dm6]	A	T	8.619e^-5	0.638	INTERGENIC
3L	6694333	3L_6694333_SNP [dm3] 3L_6701233_SNP [dm6]	T	C	8.678e^-5	0.638	INTRON SP1173
2R	16940546	2R_16940546_SNP [dm3] 2R_21053041_SNP [dm6]	C	T	8.683e^-5	0.638	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9446758	X_9446758_SNP [dm3] X_9552725_SNP [dm6]	C	T	8.702e^-5	0.638	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	8773382	2L_8773382_SNP [dm3] 2L_8773382_SNP [dm6]	C	G	8.716e^-5	0.638	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad
3R	27245123	3R_27245123_SNP [dm3] 3R_31419401_SNP [dm6]	C	G	8.801e^-5	0.638	INTRON Gprk2
3R	25349095	3R_25349095_SNP [dm3] 3R_29523373_SNP [dm6]	G	A	8.840e^-5	0.638	INTERGENIC	TF binding site mE1_TFBS_sens
2R	19675839	2R_19675839_SNP [dm3] 2R_23788316_SNP [dm6]	C	A	8.866e^-5	0.638	INTRON CG9850
2R	15940968	2R_15940968_SNP [dm3] 2R_20053463_SNP [dm6]	C	T	8.964e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	26805775	3R_26805775_SNP [dm3] 3R_30980053_SNP [dm6]	G	A	8.992e^-5	0.638	INTRON 5-HT7
X	9858739	X_9858739_SNP [dm3] X_9964706_SNP [dm6]	C	A	9.013e^-5	0.638	NON_SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
3R	11534122	3R_11534122_SNP [dm3] 3R_15708400_SNP [dm6]	A	G	9.074e^-5	0.638	UTR_3_PRIME CG5404
2L	12390965	2L_12390965_SNP [dm3] 2L_12390965_SNP [dm6]	G	A	9.120e^-5	0.638	INTRON bru-2
3R	18500190	3R_18500190_SNP [dm3] 3R_22674468_SNP [dm6]	G	A	9.133e^-5	0.638	SYNONYMOUS_CODING CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	18366087	3L_18366087_SNP [dm3] 3L_18372987_SNP [dm6]	G	C	9.161e^-5	0.638	INTERGENIC
3L	4871822	3L_4871822_SNP [dm3] 3L_4871822_SNP [dm6]	C	T	9.172e^-5	0.638	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	10454563	3L_10454563_SNP [dm3] 3L_10461463_SNP [dm6]	C	A	9.188e^-5	0.638	NON_SYNONYMOUS_CODING Gem3
3R	11529070	3R_11529070_SNP [dm3] 3R_15703348_SNP [dm6]	T	G	9.196e^-5	0.638	INTERGENIC
3R	9866450	3R_9866450_DEL [dm3] 3R_14040728_DEL [dm6]	TATGTATGAA	CCAGAACGC	9.238e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4007007	2R_4007007_SNP [dm3] 2R_8119502_SNP [dm6]	G	T	9.321e^-5	0.638	INTRON Asap	TF binding site mE1_TFBS_cad
3L	4872414	3L_4872414_SNP [dm3] 3L_4872414_SNP [dm6]	A	G	9.370e^-5	0.638	NON_SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16900141	2R_16900141_SNP [dm3] 2R_21012636_SNP [dm6]	T	G	9.371e^-5	0.638	UPSTREAM grau INTRON CG9346	TF binding site mE1_TFBS_sens
2R	5212202	2R_5212202_SNP [dm3] 2R_9324697_SNP [dm6]	G	A	9.390e^-5	0.638	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11703508	2L_11703508_SNP [dm3] 2L_11703508_SNP [dm6]	G	A	9.408e^-5	0.638	INTERGENIC
2L	12385475	2L_12385475_SNP [dm3] 2L_12385475_SNP [dm6]	A	C	9.413e^-5	0.638	INTRON bru-2
2L	20292803	2L_20292803_SNP [dm3] 2L_20292803_SNP [dm6]	A	C	9.447e^-5	0.638	INTERGENIC
2R	20689422	2R_20689422_SNP [dm3] 2R_24801899_SNP [dm6]	A	G	9.483e^-5	0.638	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	3702862	3L_3702862_SNP [dm3] 3L_3702862_SNP [dm6]	T	G	9.516e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7098124	3L_7098124_SNP [dm3] 3L_7105024_SNP [dm6]	G	A	9.528e^-5	0.638	INTRON form3
2R	9793047	2R_9793047_SNP [dm3] 2R_13905542_SNP [dm6]	C	A	9.537e^-5	0.638	INTRON shot
2L	20422800	2L_20422800_INS [dm3] 2L_20422800_INS [dm6]	T	TT	9.577e^-5	0.638	UTR_3_PRIME Arpc2 DOWNSTREAM snoRNA:Psi18S-640g & 2 others
3R	13802855	3R_13802855_SNP [dm3] 3R_17977133_SNP [dm6]	A	G	9.608e^-5	0.638	INTRON cpo
3L	3702842	3L_3702842_SNP [dm3] 3L_3702842_SNP [dm6]	T	C	9.679e^-5	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11529901	3R_11529901_SNP [dm3] 3R_15704179_SNP [dm6]	G	A	9.743e^-5	0.638	UPSTREAM CG5404 INTERGENIC
3L	12823618	3L_12823618_SNP [dm3] 3L_12830518_SNP [dm6]	G	T	9.794e^-5	0.638	INTRON CG10960	TF binding site mE1_TFBS_cnc
3R	21030811	3R_21030811_SNP [dm3] 3R_25205089_SNP [dm6]	G	C	9.818e^-5	0.638	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	18246124	X_18246124_SNP [dm3] X_18352091_SNP [dm6]	G	A	9.840e^-5	0.638	INTRON CG6123
2R	6372638	2R_6372638_SNP [dm3] 2R_10485133_SNP [dm6]	T	G	9.849e^-5	0.638	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3700343	3L_3700343_SNP [dm3] 3L_3700343_SNP [dm6]	C	G	9.885e^-5	0.638	INTERGENIC
2L	22265021	2L_22265021_SNP [dm3] 2L_22265021_SNP [dm6]	T	G	9.889e^-5	0.638	INTERGENIC	transposable element FlyBase
2R	19978833	2R_19978833_SNP [dm3] 2R_24091310_SNP [dm6]	G	A	9.890e^-5	0.638	SYNONYMOUS_CODING snama DOWNSTREAM gek
3L	11839657	3L_11839657_SNP [dm3] 3L_11846557_SNP [dm6]	T	A	9.909e^-5	0.638	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	9858672	X_9858672_SNP [dm3] X_9964639_SNP [dm6]	T	C	9.912e^-5	0.638	UPSTREAM CG1889 INTRON CG1791
2L	20294000	2L_20294000_SNP [dm3] 2L_20294000_SNP [dm6]	G	A	9.916e^-5	0.638	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7635267	2R_7635267_SNP [dm3] 2R_11747762_SNP [dm6]	C	T	9.921e^-5	0.638	INTERGENIC
3R	11529959	3R_11529959_SNP [dm3] 3R_15704237_SNP [dm6]	C	T	9.954e^-5	0.638	UPSTREAM CG5404 INTERGENIC
3L	12822431	3L_12822431_SNP [dm3] 3L_12829331_SNP [dm6]	G	A	9.956e^-5	0.638	INTRON CG10960
3L	5917838	3L_5917838_SNP [dm3] 3L_5924738_SNP [dm6]	A	T	9.956e^-5	0.638	INTRON Vap-33B
X	3643779	X_3643779_SNP [dm3] X_3749746_SNP [dm6]	T	C	9.966e^-5	0.638	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11529940	3R_11529940_SNP [dm3] 3R_15704218_SNP [dm6]	T	A	1.008e^-4	0.639	UPSTREAM CG5404 INTERGENIC
2L	22636652	2L_22636652_SNP [dm3] 2L_22743920_SNP [dm6]	G	C	1.013e^-4	0.639	INTRON CG40006
3R	11508246	3R_11508246_SNP [dm3] 3R_15682524_SNP [dm6]	T	C	1.013e^-4	0.639	INTRON pxb	TF binding site mE1_TFBS_HSA
3L	8653500	3L_8653500_DEL [dm3] 3L_8660400_DEL [dm6]	TGT	T	1.024e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1984080	3R_1984080_SNP [dm3] 3R_6158358_SNP [dm6]	G	T	1.026e^-4	0.639	INTERGENIC
X	15812834	X_15812834_SNP [dm3] X_15918801_SNP [dm6]	A	C	1.030e^-4	0.639	SYNONYMOUS_CODING CG8909
3L	11839623	3L_11839623_SNP [dm3] 3L_11846523_SNP [dm6]	A	G	1.032e^-4	0.639	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	15920020	3R_15920020_SNP [dm3] 3R_20094298_SNP [dm6]	A	G	1.033e^-4	0.639	INTERGENIC
3R	11530448	3R_11530448_SNP [dm3] 3R_15704726_SNP [dm6]	A	C	1.035e^-4	0.639	UTR_5_PRIME CG5404
2L	20300346	2L_20300346_SNP [dm3] 2L_20300346_SNP [dm6]	A	C	1.041e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4917685	X_4917685_DEL [dm3] X_5023652_DEL [dm6]	AA	A	1.049e^-4	0.639	INTRON CR44833	regulatory region REDfly_CRMs
2L	20137590	2L_20137590_SNP [dm3] 2L_20137590_SNP [dm6]	T	C	1.051e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3776369	2R_3776369_SNP [dm3] 2R_7888864_SNP [dm6]	A	T	1.073e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	22180824	X_22180824_SNP [dm3] X_22778988_SNP [dm6]	A	T	1.074e^-4	0.639	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
3R	25727333	3R_25727333_SNP [dm3] 3R_29901611_SNP [dm6]	T	C	1.076e^-4	0.639	INTRON CG31038
3L	12823941	3L_12823941_SNP [dm3] 3L_12830841_SNP [dm6]	A	G	1.079e^-4	0.639	INTRON CG10960	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11530154	3R_11530154_SNP [dm3] 3R_15704432_SNP [dm6]	G	C	1.088e^-4	0.639	UPSTREAM CG5404 INTERGENIC
3L	9957514	3L_9957514_SNP [dm3] 3L_9964414_SNP [dm6]	T	A	1.090e^-4	0.639	INTRON CG34356
2R	5528117	2R_5528117_SNP [dm3] 2R_9640612_SNP [dm6]	G	T	1.094e^-4	0.639	INTRON Mmp2
2L	20083070	2L_20083070_SNP [dm3] 2L_20083070_SNP [dm6]	T	A	1.099e^-4	0.639	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20390016	2L_20390016_SNP [dm3] 2L_20390016_SNP [dm6]	C	A	1.100e^-4	0.639	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20553405	3R_20553405_SNP [dm3] 3R_24727683_SNP [dm6]	T	A	1.101e^-4	0.639	INTRON tok	TF binding site BDTNP1_TFBS_dl
3R	8099293	3R_8099293_SNP [dm3] 3R_12273571_SNP [dm6]	C	G	1.103e^-4	0.639	DOWNSTREAM Sfp87B INTRON svp
3R	11529133	3R_11529133_SNP [dm3] 3R_15703411_SNP [dm6]	T	G	1.106e^-4	0.639	INTERGENIC
X	20837544	X_20837544_SNP [dm3] X_20966517_SNP [dm6]	G	T	1.111e^-4	0.639	INTERGENIC
3L	10289423	3L_10289423_SNP [dm3] 3L_10296323_SNP [dm6]	G	T	1.118e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	1.122e^-4	0.639	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3R	25969677	3R_25969677_SNP [dm3] 3R_30143955_SNP [dm6]	G	C	1.126e^-4	0.639	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20552741	2L_20552741_SNP [dm3] 2L_20552741_SNP [dm6]	C	T	1.130e^-4	0.639	INTERGENIC
3L	4873060	3L_4873060_SNP [dm3] 3L_4873060_SNP [dm6]	T	G	1.132e^-4	0.639	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12436278	2R_12436278_SNP [dm3] 2R_16548773_SNP [dm6]	G	C	1.137e^-4	0.639	INTERGENIC
3R	19010724	3R_19010724_SNP [dm3] 3R_23185002_SNP [dm6]	G	T	1.138e^-4	0.639	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11439197	3R_11439197_SNP [dm3] 3R_15613475_SNP [dm6]	C	T	1.141e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	7769870	3L_7769870_SNP [dm3] 3L_7776770_SNP [dm6]	C	T	1.146e^-4	0.639	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	18991853	3R_18991853_SNP [dm3] 3R_23166131_SNP [dm6]	A	C	1.147e^-4	0.639	INTERGENIC
3R	11530028	3R_11530028_SNP [dm3] 3R_15704306_SNP [dm6]	G	A	1.147e^-4	0.639	UPSTREAM CG5404 INTERGENIC
2L	21110850	2L_21110850_SNP [dm3] 2L_21110850_SNP [dm6]	G	A	1.151e^-4	0.639	INTRON Nhe2
X	19971292	X_19971292_SNP [dm3] X_20077259_SNP [dm6]	G	A	1.152e^-4	0.639	INTERGENIC
3L	4871907	3L_4871907_SNP [dm3] 3L_4871907_SNP [dm6]	A	C	1.153e^-4	0.639	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	11534125	3R_11534125_SNP [dm3] 3R_15708403_SNP [dm6]	C	T	1.154e^-4	0.639	UTR_3_PRIME CG5404
2L	10940661	2L_10940661_SNP [dm3] 2L_10940661_SNP [dm6]	A	T	1.157e^-4	0.639	INTRON dpr2
3L	9746857	3L_9746857_SNP [dm3] 3L_9753757_SNP [dm6]	G	A	1.157e^-4	0.639	INTRON CG42268
2L	12617280	2L_12617280_SNP [dm3] 2L_12617280_SNP [dm6]	C	A	1.157e^-4	0.639	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20146910	2L_20146910_SNP [dm3] 2L_20146910_SNP [dm6]	T	C	1.158e^-4	0.639	INTERGENIC
3L	8201579	3L_8201579_SNP [dm3] 3L_8208479_SNP [dm6]	C	T	1.160e^-4	0.639	INTERGENIC
3L	15077955	3L_15077955_SNP [dm3] 3L_15084855_SNP [dm6]	A	G	1.160e^-4	0.639	INTRON cp309
3L	4872039	3L_4872039_SNP [dm3] 3L_4872039_SNP [dm6]	T	C	1.165e^-4	0.639	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14375818	X_14375818_SNP [dm3] X_14481785_SNP [dm6]	G	A	1.166e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8243384	3L_8243384_SNP [dm3] 3L_8250284_SNP [dm6]	T	G	1.166e^-4	0.639	INTRON Dscam4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12526907	2L_12526907_SNP [dm3] 2L_12526907_SNP [dm6]	G	C	1.176e^-4	0.64	INTRON bun
3L	18413166	3L_18413166_SNP [dm3] 3L_18420066_SNP [dm6]	T	A	1.176e^-4	0.64	INTERGENIC
X	22180950	X_22180950_SNP [dm3] X_22779114_SNP [dm6]	A	G	1.177e^-4	0.64	INTRON CR44997	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10418022	2R_10418022_SNP [dm3] 2R_14530517_SNP [dm6]	A	T	1.180e^-4	0.64	INTRON ttv
2R	4006885	2R_4006885_SNP [dm3] 2R_8119380_SNP [dm6]	G	A	1.193e^-4	0.643	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
2R	16918794	2R_16918794_SNP [dm3] 2R_21031289_SNP [dm6]	C	T	1.195e^-4	0.643	INTERGENIC
3R	11528714	3R_11528714_SNP [dm3] 3R_15702992_SNP [dm6]	C	T	1.198e^-4	0.643	INTERGENIC
3L	4872701	3L_4872701_SNP [dm3] 3L_4872701_SNP [dm6]	A	G	1.204e^-4	0.643	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16599745	2L_16599745_SNP [dm3] 2L_16599745_SNP [dm6]	T	G	1.211e^-4	0.643	INTRON CG42389
3L	17392043	3L_17392043_SNP [dm3] 3L_17398943_SNP [dm6]	T	C	1.213e^-4	0.643	INTRON blot
3R	22670385	3R_22670385_SNP [dm3] 3R_26844663_SNP [dm6]	C	G	1.218e^-4	0.643	INTRON Lerp
X	5095368	X_5095368_SNP [dm3] X_5201335_SNP [dm6]	C	A	1.225e^-4	0.643	INTRON rg & 1 other
3L	4188151	3L_4188151_SNP [dm3] 3L_4188151_SNP [dm6]	G	A	1.238e^-4	0.643	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11430010	2L_11430010_DEL [dm3] 2L_11430010_DEL [dm6]	TATAATCAT	T	1.238e^-4	0.643	INTERGENIC
2L	11430025	2L_11430025_SNP [dm3] 2L_11430025_SNP [dm6]	A	C	1.238e^-4	0.643	INTERGENIC
2R	20747504	2R_20747504_SNP [dm3] 2R_24859981_SNP [dm6]	T	C	1.238e^-4	0.643	EXON CR44829
X	22182202	X_22182202_SNP [dm3] X_22780366_SNP [dm6]	A	G	1.246e^-4	0.643	INTRON CR44997	transposable element FlyBase
X	3643857	X_3643857_SNP [dm3] X_3749824_SNP [dm6]	T	A	1.246e^-4	0.643	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8589320	2R_8589320_SNP [dm3] 2R_12701815_SNP [dm6]	A	G	1.253e^-4	0.643	DOWNSTREAM wuc INTERGENIC
2L	4957402	2L_4957402_SNP [dm3] 2L_4957402_SNP [dm6]	T	A	1.257e^-4	0.643	SPLICE_SITE_REGION Marcal1 INTRON Marcal1
2R	4236880	2R_4236880_SNP [dm3] 2R_8349375_SNP [dm6]	A	T	1.258e^-4	0.643	INTRON pdm3
3L	1419970	3L_1419970_SNP [dm3] 3L_1419970_SNP [dm6]	G	A	1.260e^-4	0.643	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	8096432	3R_8096432_SNP [dm3] 3R_12270710_SNP [dm6]	T	A	1.260e^-4	0.643	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
2R	4266130	2R_4266130_DEL [dm3] 2R_8378625_DEL [dm6]	TGTAGT	AAATA	1.261e^-4	0.643	INTRON pdm3
3R	26774081	3R_26774081_SNP [dm3] 3R_30948359_SNP [dm6]	A	G	1.264e^-4	0.643	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25433835	3R_25433835_DEL [dm3] 3R_29608113_DEL [dm6]	CCCCAC	C	1.264e^-4	0.643	UPSTREAM Diedel2 INTRON alph
2R	19447404	2R_19447404_SNP [dm3] 2R_23559881_SNP [dm6]	A	G	1.267e^-4	0.643	SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F
3L	5359189	3L_5359189_SNP [dm3] 3L_5366089_SNP [dm6]	T	A	1.272e^-4	0.643	UPSTREAM Membrin & 1 other INTRON Uev1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5917846	3L_5917846_MNP [dm3] 3L_5924746_MNP [dm6]	ACA	GTT	1.274e^-4	0.643	INTRON Vap-33B
2R	17417648	2R_17417648_INS [dm3] 2R_21530143_INS [dm6]	T	TT	1.284e^-4	0.643	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11531099	3R_11531099_SNP [dm3] 3R_15705377_SNP [dm6]	A	T	1.288e^-4	0.643	INTRON CG5404
2L	20374844	2L_20374844_SNP [dm3] 2L_20374844_SNP [dm6]	G	A	1.291e^-4	0.643	UPSTREAM Ugt37a1 INTERGENIC
2R	16899998	2R_16899998_SNP [dm3] 2R_21012493_SNP [dm6]	C	G	1.291e^-4	0.643	SYNONYMOUS_CODING CG9346 UPSTREAM grau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10418018	2R_10418018_SNP [dm3] 2R_14530513_SNP [dm6]	A	T	1.293e^-4	0.643	INTRON ttv
2L	10535421	2L_10535421_SNP [dm3] 2L_10535421_SNP [dm6]	T	C	1.296e^-4	0.643	SYNONYMOUS_CODING CG18302
3R	22670306	3R_22670306_DEL [dm3] 3R_26844584_DEL [dm6]	CC	C	1.296e^-4	0.643	INTRON Lerp
X	8297829	X_8297829_SNP [dm3] X_8403796_SNP [dm6]	C	G	1.317e^-4	0.652	UTR_3_PRIME CG10555 DOWNSTREAM CG11190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15940336	2R_15940336_SNP [dm3] 2R_20052831_SNP [dm6]	C	T	1.342e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11541220	3R_11541220_SNP [dm3] 3R_15715498_SNP [dm6]	A	G	1.343e^-4	0.654	DOWNSTREAM CG31294 INTERGENIC
2L	2427255	2L_2427255_SNP [dm3] 2L_2427255_SNP [dm6]	C	G	1.343e^-4	0.654	EXON CR44912
3R	10792401	3R_10792401_SNP [dm3] 3R_14966679_SNP [dm6]	G	A	1.345e^-4	0.654	INTERGENIC
2L	20552807	2L_20552807_DEL [dm3] 2L_20552807_DEL [dm6]	TT	T	1.349e^-4	0.654	INTERGENIC
3L	1392921	3L_1392921_SNP [dm3] 3L_1392921_SNP [dm6]	A	G	1.352e^-4	0.654	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	3702864	3L_3702864_SNP [dm3] 3L_3702864_SNP [dm6]	C	T	1.353e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11529139	3R_11529139_SNP [dm3] 3R_15703417_SNP [dm6]	G	T	1.354e^-4	0.654	INTERGENIC
3R	11469506	3R_11469506_DEL [dm3] 3R_15643784_DEL [dm6]	TTTTT	C	1.355e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26999182	3R_26999182_SNP [dm3] 3R_31173460_SNP [dm6]	G	T	1.362e^-4	0.654	INTRON Gycbeta100B
3R	26999183	3R_26999183_SNP [dm3] 3R_31173461_SNP [dm6]	G	A	1.362e^-4	0.654	INTRON Gycbeta100B
3L	4872335	3L_4872335_SNP [dm3] 3L_4872335_SNP [dm6]	T	C	1.373e^-4	0.654	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11530021	3R_11530021_SNP [dm3] 3R_15704299_SNP [dm6]	T	C	1.377e^-4	0.654	UPSTREAM CG5404 INTERGENIC
2R	7636031	2R_7636031_INS [dm3] 2R_11748526_INS [dm6]	C	TTT	1.380e^-4	0.654	INTERGENIC
X	3888668	X_3888668_SNP [dm3] X_3994635_SNP [dm6]	C	T	1.381e^-4	0.654	INTERGENIC
3R	4741784	3R_4741784_SNP [dm3] 3R_8916062_SNP [dm6]	A	T	1.387e^-4	0.654	INTRON pyd	TF binding site BDTNP1_TFBS_twi
2R	18647639	2R_18647639_SNP [dm3] 2R_22760134_SNP [dm6]	G	T	1.395e^-4	0.654	SYNONYMOUS_CODING CG42260 INTRON CG42260	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11534126	3R_11534126_SNP [dm3] 3R_15708404_SNP [dm6]	A	T	1.400e^-4	0.654	UTR_3_PRIME CG5404
3L	11839743	3L_11839743_SNP [dm3] 3L_11846643_SNP [dm6]	T	G	1.409e^-4	0.654	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	4743300	3R_4743300_DEL [dm3] 3R_8917578_DEL [dm6]	TCAGCT	T	1.413e^-4	0.654	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18178759	2R_18178759_DEL [dm3] 2R_22291254_DEL [dm6]	ATAAAAATATAA...	A	1.418e^-4	0.654	UPSTREAM CR43422 INTERGENIC
2R	12633704	2R_12633704_SNP [dm3] 2R_16746199_SNP [dm6]	G	T	1.421e^-4	0.654	SYNONYMOUS_CODING CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25129210	3R_25129210_SNP [dm3] 3R_29303488_SNP [dm6]	C	T	1.429e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3R	4741628	3R_4741628_SNP [dm3] 3R_8915906_SNP [dm6]	A	G	1.434e^-4	0.654	INTRON pyd	TF binding site BDTNP1_TFBS_twi
X	11839485	X_11839485_SNP [dm3] X_11945452_SNP [dm6]	T	C	1.437e^-4	0.654	INTRON cac
2L	20136012	2L_20136012_SNP [dm3] 2L_20136012_SNP [dm6]	C	G	1.438e^-4	0.654	INTERGENIC
2L	11315092	2L_11315092_SNP [dm3] 2L_11315092_SNP [dm6]	G	A	1.439e^-4	0.654	INTERGENIC
3L	4872983	3L_4872983_SNP [dm3] 3L_4872983_SNP [dm6]	G	A	1.447e^-4	0.654	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11520487	3R_11520487_SNP [dm3] 3R_15694765_SNP [dm6]	G	A	1.447e^-4	0.654	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
3R	13153951	3R_13153951_SNP [dm3] 3R_17328229_SNP [dm6]	T	C	1.448e^-4	0.654	INTRON beat-IIa
X	7226272	X_7226272_SNP [dm3] X_7332239_SNP [dm6]	T	C	1.452e^-4	0.654	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3L	11747312	3L_11747312_SNP [dm3] 3L_11754212_SNP [dm6]	C	T	1.454e^-4	0.654	INTRON CG6024
2R	4009325	2R_4009325_SNP [dm3] 2R_8121820_SNP [dm6]	A	T	1.458e^-4	0.654	INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19131018	2L_19131018_SNP [dm3] 2L_19131018_SNP [dm6]	T	C	1.467e^-4	0.654	SYNONYMOUS_CODING Aats-asn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21110620	2L_21110620_SNP [dm3] 2L_21110620_SNP [dm6]	G	T	1.468e^-4	0.654	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl
2R	4010903	2R_4010903_SNP [dm3] 2R_8123398_SNP [dm6]	T	C	1.468e^-4	0.654	UPSTREAM Asap INTRON Nup50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4013273	2R_4013273_SNP [dm3] 2R_8125768_SNP [dm6]	C	T	1.468e^-4	0.654	SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	4013579	2R_4013579_SNP [dm3] 2R_8126074_SNP [dm6]	C	T	1.468e^-4	0.654	SYNONYMOUS_CODING coil	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	6858009	3R_6858009_SNP [dm3] 3R_11032287_SNP [dm6]	T	C	1.469e^-4	0.654	INTRON CG34114
X	9212139	X_9212139_SNP [dm3] X_9318106_SNP [dm6]	T	C	1.470e^-4	0.654	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
3L	6981207	3L_6981207_SNP [dm3] 3L_6988107_SNP [dm6]	T	C	1.471e^-4	0.654	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	4192128	3L_4192128_SNP [dm3] 3L_4192128_SNP [dm6]	C	T	1.472e^-4	0.654	INTRON CG18675 & 1 other
3L	7413724	3L_7413724_SNP [dm3] 3L_7420624_SNP [dm6]	A	G	1.472e^-4	0.654	INTERGENIC
2L	2427250	2L_2427250_SNP [dm3] 2L_2427250_SNP [dm6]	A	G	1.482e^-4	0.654	EXON CR44912
3L	5521552	3L_5521552_SNP [dm3] 3L_5528452_SNP [dm6]	C	G	1.484e^-4	0.654	INTRON Lkr
3R	20699141	3R_20699141_SNP [dm3] 3R_24873419_SNP [dm6]	C	T	1.485e^-4	0.654	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2L	12578209	2L_12578209_SNP [dm3] 2L_12578209_SNP [dm6]	C	A	1.490e^-4	0.654	INTERGENIC
2R	19917770	2R_19917770_SNP [dm3] 2R_24030247_SNP [dm6]	C	T	1.496e^-4	0.654	SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	20133730	2L_20133730_SNP [dm3] 2L_20133730_SNP [dm6]	C	G	1.498e^-4	0.654	DOWNSTREAM CG10651 INTERGENIC
2R	7693620	2R_7693620_SNP [dm3] 2R_11806115_SNP [dm6]	G	T	1.509e^-4	0.654	INTRON ths
3R	6416244	3R_6416244_SNP [dm3] 3R_10590522_SNP [dm6]	C	T	1.514e^-4	0.654	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	19983763	2R_19983763_SNP [dm3] 2R_24096240_SNP [dm6]	G	T	1.524e^-4	0.654	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4872086	3L_4872086_SNP [dm3] 3L_4872086_SNP [dm6]	C	A	1.528e^-4	0.654	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14152597	2R_14152597_SNP [dm3] 2R_18265092_SNP [dm6]	T	A	1.530e^-4	0.654	INTERGENIC
3L	4188278	3L_4188278_SNP [dm3] 3L_4188278_SNP [dm6]	T	A	1.531e^-4	0.654	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	7226267	X_7226267_SNP [dm3] X_7332234_SNP [dm6]	A	G	1.532e^-4	0.654	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
2R	20138094	2R_20138094_SNP [dm3] 2R_24250571_SNP [dm6]	T	G	1.533e^-4	0.654	NON_SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
3R	11439200	3R_11439200_SNP [dm3] 3R_15613478_SNP [dm6]	A	G	1.535e^-4	0.654	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	17610164	2L_17610164_SNP [dm3] 2L_17610164_SNP [dm6]	T	G	1.535e^-4	0.654	INTERGENIC
2L	10618590	2L_10618590_SNP [dm3] 2L_10618590_SNP [dm6]	A	C	1.542e^-4	0.654	INTRON Trim9
2L	20145355	2L_20145355_SNP [dm3] 2L_20145355_SNP [dm6]	A	T	1.546e^-4	0.654	INTERGENIC
X	4334605	X_4334605_SNP [dm3] X_4440572_SNP [dm6]	C	T	1.546e^-4	0.654	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	10190611	X_10190611_SNP [dm3] X_10296578_SNP [dm6]	G	A	1.547e^-4	0.654	INTRON alpha-Man-I
2R	9755428	2R_9755428_SNP [dm3] 2R_13867923_SNP [dm6]	T	C	1.548e^-4	0.654	INTRON shot
3L	6395012	3L_6395012_SNP [dm3] 3L_6401912_SNP [dm6]	T	C	1.551e^-4	0.654	INTRON CG42747
3L	568817	3L_568817_SNP [dm3] 3L_568817_SNP [dm6]	A	T	1.552e^-4	0.654	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15824738	2R_15824738_SNP [dm3] 2R_19937233_SNP [dm6]	A	G	1.556e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20314380	2L_20314380_DEL [dm3] 2L_20314380_DEL [dm6]	ATTAGGTGAGATATCGA...	A	1.568e^-4	0.654	INTRON spir	TF binding site mE1_TFBS_cad
2R	18558233	2R_18558233_SNP [dm3] 2R_22670728_SNP [dm6]	G	A	1.569e^-4	0.654	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	3699920	3L_3699920_SNP [dm3] 3L_3699920_SNP [dm6]	T	C	1.573e^-4	0.654	INTERGENIC
3L	14534594	3L_14534594_SNP [dm3] 3L_14541494_SNP [dm6]	C	G	1.574e^-4	0.654	UTR_3_PRIME CG9238 DOWNSTREAM CG9238
2L	1833042	2L_1833042_SNP [dm3] 2L_1833042_SNP [dm6]	T	C	1.580e^-4	0.654	UPSTREAM c-cup INTERGENIC
2L	20433070	2L_20433070_SNP [dm3] 2L_20433070_SNP [dm6]	G	C	1.583e^-4	0.654	INTRON CG31688
X	3662236	X_3662236_SNP [dm3] X_3768203_SNP [dm6]	G	T	1.590e^-4	0.654	INTRON tlk
2L	20141865	2L_20141865_INS [dm3] 2L_20141865_INS [dm6]	A	ACTTTCTAAGCCAGAAA...	1.601e^-4	0.654	INTERGENIC
2L	20628722	2L_20628722_SNP [dm3] 2L_20628722_SNP [dm6]	A	C	1.613e^-4	0.654	INTERGENIC
3R	11508437	3R_11508437_SNP [dm3] 3R_15682715_SNP [dm6]	G	T	1.615e^-4	0.654	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19676387	2R_19676387_SNP [dm3] 2R_23788864_SNP [dm6]	G	A	1.616e^-4	0.654	INTRON CG9850	TF binding site mE1_TFBS_HSA
3L	6395013	3L_6395013_SNP [dm3] 3L_6401913_SNP [dm6]	G	A	1.620e^-4	0.654	INTRON CG42747
X	18245725	X_18245725_SNP [dm3] X_18351692_SNP [dm6]	C	T	1.620e^-4	0.654	INTRON CG6123
3L	12313604	3L_12313604_SNP [dm3] 3L_12320504_SNP [dm6]	G	T	1.624e^-4	0.654	INTERGENIC
3L	14665614	3L_14665614_SNP [dm3] 3L_14672514_SNP [dm6]	C	A	1.626e^-4	0.654	UPSTREAM ome & 1 other DOWNSTREAM dlp INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15940507	2R_15940507_SNP [dm3] 2R_20053002_SNP [dm6]	G	A	1.627e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	20979911	3L_20979911_DEL [dm3] 3L_20986811_DEL [dm6]	CGACACGCGGCCGACGAGAG...	C	1.631e^-4	0.654	INTERGENIC
2L	20504556	2L_20504556_SNP [dm3] 2L_20504556_SNP [dm6]	T	C	1.635e^-4	0.654	INTERGENIC
3R	10496188	3R_10496188_SNP [dm3] 3R_14670466_SNP [dm6]	C	T	1.636e^-4	0.654	INTRON Meltrin	TF binding site mE1_TFBS_cad
3R	18945971	3R_18945971_SNP [dm3] 3R_23120249_SNP [dm6]	G	T	1.640e^-4	0.654	UPSTREAM CenB1A INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13141397	2L_13141397_SNP [dm3] 2L_13141397_SNP [dm6]	A	G	1.643e^-4	0.654	INTERGENIC
3L	2331432	3L_2331432_SNP [dm3] 3L_2331432_SNP [dm6]	G	A	1.643e^-4	0.654	INTRON MsR1
2L	11921212	2L_11921212_SNP [dm3] 2L_11921212_SNP [dm6]	C	T	1.644e^-4	0.654	INTRON Pde1c
3R	20698930	3R_20698930_SNP [dm3] 3R_24873208_SNP [dm6]	C	T	1.649e^-4	0.654	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
X	18240829	X_18240829_SNP [dm3] X_18346796_SNP [dm6]	T	C	1.650e^-4	0.654	INTRON CG6123
3R	4741745	3R_4741745_SNP [dm3] 3R_8916023_SNP [dm6]	T	C	1.653e^-4	0.654	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	18591771	3R_18591771_SNP [dm3] 3R_22766049_SNP [dm6]	G	C	1.658e^-4	0.654	NON_SYNONYMOUS_CODING CG4721 DOWNSTREAM CG13841 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
2L	20293934	2L_20293934_SNP [dm3] 2L_20293934_SNP [dm6]	T	C	1.667e^-4	0.654	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	3888666	X_3888666_SNP [dm3] X_3994633_SNP [dm6]	A	C	1.671e^-4	0.654	INTERGENIC
2L	8169481	2L_8169481_SNP [dm3] 2L_8169481_SNP [dm6]	A	G	1.673e^-4	0.654	INTRON Piezo
2L	20351369	2L_20351369_SNP [dm3] 2L_20351369_SNP [dm6]	G	A	1.675e^-4	0.654	INTRON RtGEF
3L	7169398	3L_7169398_SNP [dm3] 3L_7176298_SNP [dm6]	G	A	1.676e^-4	0.654	INTRON Dscam2
3L	9043759	3L_9043759_SNP [dm3] 3L_9050659_SNP [dm6]	G	A	1.681e^-4	0.654	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_cad
2L	20376524	2L_20376524_SNP [dm3] 2L_20376524_SNP [dm6]	C	T	1.682e^-4	0.654	DOWNSTREAM CG16798 INTERGENIC
2R	17300176	2R_17300176_SNP [dm3] 2R_21412671_SNP [dm6]	A	G	1.683e^-4	0.654	INTRON Sdc
2R	4128528	2R_4128528_SNP [dm3] 2R_8241023_SNP [dm6]	T	C	1.683e^-4	0.654	DOWNSTREAM pnut & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15940803	2R_15940803_SNP [dm3] 2R_20053298_SNP [dm6]	C	T	1.689e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	20335057	2L_20335057_DEL [dm3] 2L_20335057_DEL [dm6]	GTGTGCCAAG	G	1.695e^-4	0.654	INTRON spir
3R	13061190	3R_13061190_SNP [dm3] 3R_17235468_SNP [dm6]	C	G	1.695e^-4	0.654	INTRON beat-IIb
3R	19653430	3R_19653430_SNP [dm3] 3R_23827708_SNP [dm6]	A	T	1.696e^-4	0.654	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8702802	X_8702802_SNP [dm3] X_8808769_SNP [dm6]	A	T	1.703e^-4	0.656	INTERGENIC
2R	1072733	2R_1072733_SNP [dm3] 2R_5185228_SNP [dm6]	G	A	1.723e^-4	0.662	INTRON Nipped-A	transposable element FlyBase
2R	19975285	2R_19975285_SNP [dm3] 2R_24087762_SNP [dm6]	C	T	1.725e^-4	0.662	INTRON snama
2R	18557856	2R_18557856_SNP [dm3] 2R_22670351_SNP [dm6]	T	C	1.733e^-4	0.663	UTR_3_PRIME CG13516 UPSTREAM RYBP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
2L	10940636	2L_10940636_SNP [dm3] 2L_10940636_SNP [dm6]	C	G	1.737e^-4	0.663	INTRON dpr2
3R	11531138	3R_11531138_INS [dm3] 3R_15705416_INS [dm6]	A	AA	1.740e^-4	0.663	INTRON CG5404
3R	11469621	3R_11469621_SNP [dm3] 3R_15643899_SNP [dm6]	T	A	1.745e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11498096	3R_11498096_SNP [dm3] 3R_15672374_SNP [dm6]	A	G	1.750e^-4	0.665	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	18991774	3R_18991774_DEL [dm3] 3R_23166052_DEL [dm6]	CAAATAAA	T	1.756e^-4	0.665	INTERGENIC
3R	13857740	3R_13857740_SNP [dm3] 3R_18032018_SNP [dm6]	T	A	1.761e^-4	0.665	INTERGENIC
3R	6849644	3R_6849644_SNP [dm3] 3R_11023922_SNP [dm6]	G	C	1.769e^-4	0.665	INTRON CG34114
2R	3920735	2R_3920735_SNP [dm3] 2R_8033230_SNP [dm6]	T	G	1.779e^-4	0.665	INTRON Optix
2R	14049653	2R_14049653_SNP [dm3] 2R_18162148_SNP [dm6]	G	A	1.786e^-4	0.665	INTRON CG10915
2R	14270930	2R_14270930_SNP [dm3] 2R_18383425_SNP [dm6]	A	T	1.786e^-4	0.665	UPSTREAM IM1 & 1 other INTERGENIC
2R	10367797	2R_10367797_SNP [dm3] 2R_14480292_SNP [dm6]	T	G	1.789e^-4	0.665	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
3R	11456891	3R_11456891_SNP [dm3] 3R_15631169_SNP [dm6]	C	G	1.790e^-4	0.665	INTERGENIC
3L	14540540	3L_14540540_SNP [dm3] 3L_14547440_SNP [dm6]	G	A	1.791e^-4	0.665	SYNONYMOUS_CODING CG9238 UTR_5_PRIME CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20137541	2L_20137541_SNP [dm3] 2L_20137541_SNP [dm6]	A	G	1.794e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5405018	2L_5405018_SNP [dm3] 2L_5405018_SNP [dm6]	A	G	1.795e^-4	0.665	NON_SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_z
3R	12308346	3R_12308346_SNP [dm3] 3R_16482624_SNP [dm6]	T	A	1.798e^-4	0.665	UPSTREAM CG14898 DOWNSTREAM Der-2 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	13785117	3R_13785117_SNP [dm3] 3R_17959395_SNP [dm6]	C	A	1.802e^-4	0.665	INTRON cpo
X	5095289	X_5095289_SNP [dm3] X_5201256_SNP [dm6]	C	T	1.802e^-4	0.665	INTRON rg & 1 other
3L	4872073	3L_4872073_SNP [dm3] 3L_4872073_SNP [dm6]	C	A	1.808e^-4	0.666	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3332661	3L_3332661_SNP [dm3] 3L_3332661_SNP [dm6]	C	T	1.810e^-4	0.666	SYNONYMOUS_CODING CG14961 DOWNSTREAM CG14969	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17849314	2R_17849314_SNP [dm3] 2R_21961809_SNP [dm6]	G	T	1.815e^-4	0.666	INTERGENIC
3R	11531237	3R_11531237_SNP [dm3] 3R_15705515_SNP [dm6]	C	T	1.818e^-4	0.666	INTRON CG5404
3R	11530589	3R_11530589_SNP [dm3] 3R_15704867_SNP [dm6]	G	A	1.827e^-4	0.668	NON_SYNONYMOUS_CODING CG5404
2R	19975263	2R_19975263_SNP [dm3] 2R_24087740_SNP [dm6]	T	A	1.841e^-4	0.669	INTRON snama
2R	19975264	2R_19975264_SNP [dm3] 2R_24087741_SNP [dm6]	T	G	1.841e^-4	0.669	INTRON snama
3R	5767757	3R_5767757_SNP [dm3] 3R_9942035_SNP [dm6]	T	C	1.849e^-4	0.669	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11002511	3R_11002511_SNP [dm3] 3R_15176789_SNP [dm6]	A	G	1.852e^-4	0.669	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
2R	20731823	2R_20731823_SNP [dm3] 2R_24844300_SNP [dm6]	A	T	1.857e^-4	0.669	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5679832	2L_5679832_DEL [dm3] 2L_5679832_DEL [dm6]	ATATATTCTGCT...	C	1.860e^-4	0.669	DOWNSTREAM CG12511 INTERGENIC
2L	20313551	2L_20313551_SNP [dm3] 2L_20313551_SNP [dm6]	G	T	1.862e^-4	0.669	INTRON spir
3L	5165002	3L_5165002_SNP [dm3] 3L_5171902_SNP [dm6]	A	G	1.866e^-4	0.669	INTRON shep
3R	21030781	3R_21030781_SNP [dm3] 3R_25205059_SNP [dm6]	G	A	1.866e^-4	0.669	INTRON CG13654 & 1 other
3R	11541221	3R_11541221_SNP [dm3] 3R_15715499_SNP [dm6]	G	C	1.869e^-4	0.669	DOWNSTREAM CG31294 INTERGENIC
2R	15941019	2R_15941019_SNP [dm3] 2R_20053514_SNP [dm6]	A	G	1.870e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	6849636	3R_6849636_SNP [dm3] 3R_11023914_SNP [dm6]	T	C	1.883e^-4	0.67	INTRON CG34114
2L	20298997	2L_20298997_SNP [dm3] 2L_20298997_SNP [dm6]	G	T	1.883e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11938476	2L_11938476_SNP [dm3] 2L_11938476_SNP [dm6]	T	C	1.894e^-4	0.67	NON_SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
3L	19431360	3L_19431360_SNP [dm3] 3L_19438260_SNP [dm6]	G	A	1.895e^-4	0.67	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21259435	3R_21259435_SNP [dm3] 3R_25433713_SNP [dm6]	A	C	1.902e^-4	0.67	INTRON Fur1
3R	11520914	3R_11520914_SNP [dm3] 3R_15695192_SNP [dm6]	A	C	1.902e^-4	0.67	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
2R	10437881	2R_10437881_SNP [dm3] 2R_14550376_SNP [dm6]	G	A	1.910e^-4	0.67	INTRON ttv
2L	20300390	2L_20300390_INS [dm3] 2L_20300390_INS [dm6]	T	TG	1.916e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14505242	3R_14505242_SNP [dm3] 3R_18679520_SNP [dm6]	G	A	1.925e^-4	0.67	SYNONYMOUS_CODING CG7706
2R	17237416	2R_17237416_SNP [dm3] 2R_21349911_SNP [dm6]	C	T	1.926e^-4	0.67	INTRON CG17974
2R	17237421	2R_17237421_DEL [dm3] 2R_21349916_DEL [dm6]	AA	A	1.926e^-4	0.67	INTRON CG17974
2R	4918794	2R_4918794_SNP [dm3] 2R_9031289_SNP [dm6]	T	A	1.940e^-4	0.67	UPSTREAM CG8170 INTERGENIC
3L	8068957	3L_8068957_SNP [dm3] 3L_8075857_SNP [dm6]	T	G	1.941e^-4	0.67	INTRON Ect4
3R	19010712	3R_19010712_SNP [dm3] 3R_23184990_SNP [dm6]	T	C	1.947e^-4	0.67	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6541267	2R_6541267_SNP [dm3] 2R_10653762_SNP [dm6]	T	C	1.948e^-4	0.67	INTERGENIC
X	10029205	X_10029205_SNP [dm3] X_10135172_SNP [dm6]	A	C	1.949e^-4	0.67	INTRON CR44894 & 1 other
2R	9755498	2R_9755498_SNP [dm3] 2R_13867993_SNP [dm6]	G	A	1.949e^-4	0.67	INTRON shot
3R	11508687	3R_11508687_SNP [dm3] 3R_15682965_SNP [dm6]	T	G	1.956e^-4	0.67	INTRON pxb	TF binding site mE1_TFBS_HSA
3L	4870685	3L_4870685_SNP [dm3] 3L_4870685_SNP [dm6]	C	A	1.957e^-4	0.67	SYNONYMOUS_CODING CG17150	TF binding site BDTNP1_TFBS_sna
2R	11847935	2R_11847935_SNP [dm3] 2R_15960430_SNP [dm6]	A	G	1.958e^-4	0.67	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4872770	3L_4872770_SNP [dm3] 3L_4872770_SNP [dm6]	C	G	1.961e^-4	0.67	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	530819	3L_530819_SNP [dm3] 3L_530819_SNP [dm6]	T	C	1.962e^-4	0.67	INTRON klar
3L	2344777	3L_2344777_SNP [dm3] 3L_2344777_SNP [dm6]	A	G	1.969e^-4	0.67	UTR_3_PRIME MsR1
3L	3702841	3L_3702841_SNP [dm3] 3L_3702841_SNP [dm6]	T	A	1.978e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19553249	3L_19553249_SNP [dm3] 3L_19560149_SNP [dm6]	A	C	1.979e^-4	0.67	DOWNSTREAM CR44676 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5898800	2R_5898800_SNP [dm3] 2R_10011295_SNP [dm6]	A	C	1.980e^-4	0.67	DOWNSTREAM mir-4967 INTRON Pka-R2
2R	19675611	2R_19675611_SNP [dm3] 2R_23788088_SNP [dm6]	A	G	1.981e^-4	0.67	INTRON CG9850
2R	3299398	2R_3299398_SNP [dm3] 2R_7411893_SNP [dm6]	A	C	1.981e^-4	0.67	INTERGENIC	TF binding site mE1_TFBS_cad
X	13128817	X_13128817_SNP [dm3] X_13234784_SNP [dm6]	A	T	1.982e^-4	0.67	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	10656120	3L_10656120_SNP [dm3] 3L_10663020_SNP [dm6]	A	C	1.983e^-4	0.67	UTR_3_PRIME CG8003 UPSTREAM CG32068 DOWNSTREAM CG8003	TF binding site BDTNP1_TFBS_dl
3L	5521724	3L_5521724_SNP [dm3] 3L_5528624_SNP [dm6]	G	A	1.989e^-4	0.67	INTRON Lkr
X	7226268	X_7226268_SNP [dm3] X_7332235_SNP [dm6]	T	G	1.989e^-4	0.67	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3L	14665683	3L_14665683_SNP [dm3] 3L_14672583_SNP [dm6]	A	T	1.990e^-4	0.67	UPSTREAM ome & 1 other DOWNSTREAM dlp INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13586186	2L_13586186_SNP [dm3] 2L_13586186_SNP [dm6]	G	A	1.995e^-4	0.671	INTRON kuz
2L	13873170	2L_13873170_SNP [dm3] 2L_13873170_SNP [dm6]	C	G	2.005e^-4	0.673	INTRON CenG1A
3R	13803388	3R_13803388_SNP [dm3] 3R_17977666_SNP [dm6]	A	T	2.016e^-4	0.675	INTRON cpo
2R	18558194	2R_18558194_DEL [dm3] 2R_22670689_DEL [dm6]	GC	G	2.024e^-4	0.675	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	10940654	2L_10940654_SNP [dm3] 2L_10940654_SNP [dm6]	T	A	2.025e^-4	0.675	INTRON dpr2
2R	19551021	2R_19551021_SNP [dm3] 2R_23663498_SNP [dm6]	T	A	2.025e^-4	0.675	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1108443	3L_1108443_SNP [dm3] 3L_1108443_SNP [dm6]	C	G	2.038e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17394700	3L_17394700_SNP [dm3] 3L_17401600_SNP [dm6]	T	A	2.040e^-4	0.676	UPSTREAM noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	13670025	3L_13670025_SNP [dm3] 3L_13676925_SNP [dm6]	C	T	2.043e^-4	0.676	INTRON bru-3
2L	22262576	2L_22262576_SNP [dm3] 2L_22262576_SNP [dm6]	G	C	2.050e^-4	0.676	INTERGENIC
3L	5309917	3L_5309917_SNP [dm3] 3L_5316817_SNP [dm6]	A	T	2.058e^-4	0.676	UPSTREAM CR45741 INTERGENIC
3R	3953605	3R_3953605_SNP [dm3] 3R_8127883_SNP [dm6]	T	G	2.066e^-4	0.676	INTRON Gie	TF binding site mE1_TFBS_HSA
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	2.071e^-4	0.676	INTRON spir & 1 other
2R	12895294	2R_12895294_SNP [dm3] 2R_17007789_SNP [dm6]	T	A	2.075e^-4	0.676	UTR_3_PRIME Ehbp1 DOWNSTREAM Ehbp1 & 1 other
X	4560960	X_4560960_SNP [dm3] X_4666927_SNP [dm6]	T	A	2.079e^-4	0.676	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	13061189	3R_13061189_SNP [dm3] 3R_17235467_SNP [dm6]	G	T	2.079e^-4	0.676	INTRON beat-IIb
2R	16962436	2R_16962436_SNP [dm3] 2R_21074931_SNP [dm6]	C	A	2.081e^-4	0.676	UPSTREAM Treh INTRON Treh
2R	20747249	2R_20747249_SNP [dm3] 2R_24859726_SNP [dm6]	C	T	2.082e^-4	0.676	EXON CR44829
2L	20393398	2L_20393398_SNP [dm3] 2L_20393398_SNP [dm6]	A	T	2.086e^-4	0.676	INTRON CG10947
3L	10405614	3L_10405614_SNP [dm3] 3L_10412514_SNP [dm6]	C	G	2.087e^-4	0.676	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	19023591	3R_19023591_DEL [dm3] 3R_23197869_DEL [dm6]	TCTATTTTTCT...	T	2.087e^-4	0.676	INTRON cnc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	13137620	3R_13137620_SNP [dm3] 3R_17311898_SNP [dm6]	G	T	2.089e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1109685	3L_1109685_SNP [dm3] 3L_1109685_SNP [dm6]	T	A	2.092e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	19997567	2R_19997567_SNP [dm3] 2R_24110044_SNP [dm6]	C	T	2.101e^-4	0.677	NON_SYNONYMOUS_CODING CG4049
3L	569463	3L_569463_SNP [dm3] 3L_569463_SNP [dm6]	C	T	2.106e^-4	0.677	INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26053383	3R_26053383_SNP [dm3] 3R_30227661_SNP [dm6]	T	A	2.106e^-4	0.677	INTERGENIC
2L	22265018	2L_22265018_SNP [dm3] 2L_22265018_SNP [dm6]	A	C	2.107e^-4	0.677	INTERGENIC	transposable element FlyBase
3L	14035013	3L_14035013_SNP [dm3] 3L_14041913_SNP [dm6]	T	C	2.115e^-4	0.677	INTRON Hsc70Cb
2R	19973309	2R_19973309_SNP [dm3] 2R_24085786_SNP [dm6]	A	C	2.122e^-4	0.677	SYNONYMOUS_CODING CG16786 UPSTREAM snama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18607624	3R_18607624_SNP [dm3] 3R_22781902_SNP [dm6]	A	G	2.123e^-4	0.677	UTR_5_PRIME CG7029 UPSTREAM CR43654 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7460137	2L_7460137_SNP [dm3] 2L_7460137_SNP [dm6]	C	T	2.124e^-4	0.677	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22493264	3R_22493264_SNP [dm3] 3R_26667542_SNP [dm6]	T	C	2.147e^-4	0.684	INTRON beat-VII
X	17561126	X_17561126_SNP [dm3] X_17667093_SNP [dm6]	G	A	2.159e^-4	0.685	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5490107	3L_5490107_DEL [dm3] 3L_5497007_DEL [dm6]	GG	G	2.169e^-4	0.685	DOWNSTREAM blanks INTERGENIC
3L	20943619	3L_20943619_SNP [dm3] 3L_20950519_SNP [dm6]	A	G	2.176e^-4	0.685	EXON CR45243	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4871962	3L_4871962_SNP [dm3] 3L_4871962_SNP [dm6]	A	T	2.177e^-4	0.685	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13984674	3R_13984674_SNP [dm3] 3R_18158952_SNP [dm6]	A	G	2.180e^-4	0.685	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3L	542184	3L_542184_SNP [dm3] 3L_542184_SNP [dm6]	A	G	2.181e^-4	0.685	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	542217	3L_542217_SNP [dm3] 3L_542217_SNP [dm6]	C	T	2.181e^-4	0.685	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7636044	2R_7636044_SNP [dm3] 2R_11748539_SNP [dm6]	A	T	2.193e^-4	0.685	INTERGENIC
2R	17309833	2R_17309833_SNP [dm3] 2R_21422328_SNP [dm6]	C	T	2.195e^-4	0.685	INTRON Sdc
2L	4018893	2L_4018893_SNP [dm3] 2L_4018893_SNP [dm6]	A	C	2.197e^-4	0.685	INTERGENIC
X	10051924	X_10051924_SNP [dm3] X_10157891_SNP [dm6]	A	G	2.198e^-4	0.685	UPSTREAM CG43902 INTRON CR44894
3L	1108809	3L_1108809_SNP [dm3] 3L_1108809_SNP [dm6]	T	A	2.200e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	14071021	X_14071021_SNP [dm3] X_14176988_SNP [dm6]	G	A	2.207e^-4	0.685	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
2L	5353523	2L_5353523_SNP [dm3] 2L_5353523_SNP [dm6]	A	G	2.223e^-4	0.685	INTRON nompC
3L	869272	3L_869272_SNP [dm3] 3L_869272_SNP [dm6]	C	A	2.235e^-4	0.685	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12829334	3L_12829334_SNP [dm3] 3L_12836234_SNP [dm6]	A	G	2.236e^-4	0.685	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8068951	3L_8068951_SNP [dm3] 3L_8075851_SNP [dm6]	A	T	2.242e^-4	0.685	INTRON Ect4
X	5916262	X_5916262_SNP [dm3] X_6022229_SNP [dm6]	T	A	2.257e^-4	0.685	INTERGENIC
2R	19997463	2R_19997463_SNP [dm3] 2R_24109940_SNP [dm6]	A	G	2.258e^-4	0.685	SYNONYMOUS_CODING CG4049
2R	19998106	2R_19998106_SNP [dm3] 2R_24110583_SNP [dm6]	C	T	2.258e^-4	0.685	SYNONYMOUS_CODING CG4049
2R	20002231	2R_20002231_SNP [dm3] 2R_24114708_SNP [dm6]	C	T	2.258e^-4	0.685	START_GAINED CG3253 UTR_5_PRIME CG3253 UPSTREAM CG4049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	20003420	2R_20003420_SNP [dm3] 2R_24115897_SNP [dm6]	T	G	2.258e^-4	0.685	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
2R	20003613	2R_20003613_SNP [dm3] 2R_24116090_SNP [dm6]	G	T	2.258e^-4	0.685	UPSTREAM CG3257 INTRON CG3253
2R	20003784	2R_20003784_SNP [dm3] 2R_24116261_SNP [dm6]	C	T	2.258e^-4	0.685	SYNONYMOUS_CODING CG3253 UPSTREAM CG3257
3R	10496438	3R_10496438_SNP [dm3] 3R_14670716_SNP [dm6]	G	A	2.270e^-4	0.685	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
3R	17235656	3R_17235656_SNP [dm3] 3R_21409934_SNP [dm6]	A	C	2.272e^-4	0.685	DOWNSTREAM lbl & 1 other INTERGENIC
2R	3776384	2R_3776384_DEL [dm3] 2R_7888879_DEL [dm6]	GAATTTTA	G	2.276e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6452462	X_6452462_SNP [dm3] X_6558429_SNP [dm6]	G	C	2.279e^-4	0.685	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	12207269	3R_12207269_SNP [dm3] 3R_16381547_SNP [dm6]	A	G	2.281e^-4	0.685	INTRON ss
2L	3552856	2L_3552856_SNP [dm3] 2L_3552856_SNP [dm6]	T	C	2.286e^-4	0.685	INTERGENIC
X	10051933	X_10051933_SNP [dm3] X_10157900_SNP [dm6]	T	A	2.296e^-4	0.685	UPSTREAM CG43902 INTRON CR44894
3R	4741652	3R_4741652_SNP [dm3] 3R_8915930_SNP [dm6]	G	A	2.297e^-4	0.685	INTRON pyd	TF binding site BDTNP1_TFBS_twi
2L	20476583	2L_20476583_SNP [dm3] 2L_20476583_SNP [dm6]	A	T	2.299e^-4	0.685	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12076637	2L_12076637_SNP [dm3] 2L_12076637_SNP [dm6]	A	T	2.301e^-4	0.685	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12313476	3L_12313476_SNP [dm3] 3L_12320376_SNP [dm6]	A	T	2.303e^-4	0.685	INTERGENIC
2L	1715374	2L_1715374_SNP [dm3] 2L_1715374_SNP [dm6]	C	T	2.304e^-4	0.685	SYNONYMOUS_CODING frtz DOWNSTREAM Rim2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4777251	3R_4777251_SNP [dm3] 3R_8951529_SNP [dm6]	A	C	2.306e^-4	0.685	UTR_3_PRIME CG11966
X	8702787	X_8702787_SNP [dm3] X_8808754_SNP [dm6]	G	A	2.310e^-4	0.685	INTERGENIC
2L	20038022	2L_20038022_INS [dm3] 2L_20038022_INS [dm6]	G	GGGT	2.316e^-4	0.685	INTRON sNPF
3L	5416519	3L_5416519_DEL [dm3] 3L_5423419_DEL [dm6]	ATT	A	2.316e^-4	0.685	UPSTREAM CG34391 INTERGENIC
2R	10073377	2R_10073377_SNP [dm3] 2R_14185872_SNP [dm6]	T	A	2.316e^-4	0.685	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_HSA
X	20836785	X_20836785_SNP [dm3] X_20965758_SNP [dm6]	T	G	2.318e^-4	0.685	UPSTREAM CG1304 INTERGENIC
3L	14540312	3L_14540312_SNP [dm3] 3L_14547212_SNP [dm6]	A	G	2.320e^-4	0.685	SYNONYMOUS_CODING CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15622155	3L_15622155_SNP [dm3] 3L_15629055_SNP [dm6]	C	G	2.325e^-4	0.685	INTRON comm3
3R	6416242	3R_6416242_SNP [dm3] 3R_10590520_SNP [dm6]	A	G	2.329e^-4	0.685	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	3643792	X_3643792_SNP [dm3] X_3749759_SNP [dm6]	G	A	2.330e^-4	0.685	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	22265020	2L_22265020_SNP [dm3] 2L_22265020_SNP [dm6]	A	T	2.333e^-4	0.685	INTERGENIC	transposable element FlyBase
2R	7392759	2R_7392759_SNP [dm3] 2R_11505254_SNP [dm6]	C	A	2.333e^-4	0.685	INTRON inv
3L	15638809	3L_15638809_SNP [dm3] 3L_15645709_SNP [dm6]	A	T	2.336e^-4	0.685	INTRON comm3
3L	10289636	3L_10289636_SNP [dm3] 3L_10296536_SNP [dm6]	C	A	2.337e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13874127	2L_13874127_SNP [dm3] 2L_13874127_SNP [dm6]	A	G	2.339e^-4	0.685	INTRON CenG1A
2L	18910259	2L_18910259_SNP [dm3] 2L_18910259_SNP [dm6]	C	A	2.354e^-4	0.687	INTERGENIC
3L	2669599	3L_2669599_SNP [dm3] 3L_2669599_SNP [dm6]	G	A	2.365e^-4	0.687	INTRON Fife
3R	11520043	3R_11520043_SNP [dm3] 3R_15694321_SNP [dm6]	G	T	2.366e^-4	0.687	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
3R	27235971	3R_27235971_SNP [dm3] 3R_31410249_SNP [dm6]	A	T	2.376e^-4	0.687	INTRON Gprk2
2R	17238014	2R_17238014_SNP [dm3] 2R_21350509_SNP [dm6]	C	A	2.377e^-4	0.687	UTR_5_PRIME CG17974
2L	17610150	2L_17610150_SNP [dm3] 2L_17610150_SNP [dm6]	T	C	2.379e^-4	0.687	INTERGENIC
3R	4722861	3R_4722861_SNP [dm3] 3R_8897139_SNP [dm6]	A	T	2.379e^-4	0.687	INTRON pyd
3L	3811904	3L_3811904_SNP [dm3] 3L_3811904_SNP [dm6]	A	C	2.380e^-4	0.687	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18223801	X_18223801_SNP [dm3] X_18329768_SNP [dm6]	A	G	2.390e^-4	0.687	INTRON CG6123
2R	20000332	2R_20000332_SNP [dm3] 2R_24112809_SNP [dm6]	A	C	2.394e^-4	0.687	NON_SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17164966	3R_17164966_SNP [dm3] 3R_21339244_SNP [dm6]	A	T	2.395e^-4	0.687	INTRON CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4872665	3L_4872665_SNP [dm3] 3L_4872665_SNP [dm6]	G	C	2.397e^-4	0.687	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18945899	3R_18945899_SNP [dm3] 3R_23120177_SNP [dm6]	G	A	2.401e^-4	0.687	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12378861	3L_12378861_SNP [dm3] 3L_12385761_SNP [dm6]	A	G	2.406e^-4	0.687	INTRON Ncc69
2R	18972401	2R_18972401_SNP [dm3] 2R_23084878_SNP [dm6]	G	A	2.407e^-4	0.687	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12331673	X_12331673_SNP [dm3] X_12437640_SNP [dm6]	T	C	2.410e^-4	0.687	INTRON Pkcdelta
2R	17027934	2R_17027934_SNP [dm3] 2R_21140429_SNP [dm6]	C	G	2.415e^-4	0.687	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3439158	3L_3439158_SNP [dm3] 3L_3439158_SNP [dm6]	C	A	2.420e^-4	0.687	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19994027	2R_19994027_SNP [dm3] 2R_24106504_SNP [dm6]	C	T	2.424e^-4	0.687	SYNONYMOUS_CODING enok DOWNSTREAM CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10591692	X_10591692_SNP [dm3] X_10697659_SNP [dm6]	A	C	2.426e^-4	0.687	INTRON X11Lbeta
2R	17237392	2R_17237392_SNP [dm3] 2R_21349887_SNP [dm6]	A	C	2.427e^-4	0.687	INTRON CG17974
3R	22480041	3R_22480041_SNP [dm3] 3R_26654319_SNP [dm6]	A	G	2.431e^-4	0.687	INTRON beat-VII
3L	16689249	3L_16689249_SNP [dm3] 3L_16696149_SNP [dm6]	C	A	2.433e^-4	0.687	INTRON CR45179 & 2 others
3R	11366922	3R_11366922_INS [dm3] 3R_15541200_INS [dm6]	A	AA	2.434e^-4	0.687	INTRON CG18519	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4305331	X_4305331_SNP [dm3] X_4411298_SNP [dm6]	C	A	2.436e^-4	0.687	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	17239186	3L_17239186_SNP [dm3] 3L_17246086_SNP [dm6]	T	A	2.440e^-4	0.687	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20965383	X_20965383_SNP [dm3] X_21094356_SNP [dm6]	T	C	2.447e^-4	0.687	SYNONYMOUS_CODING stg1 UTR_5_PRIME CG11566	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9951155	2R_9951155_SNP [dm3] 2R_14063650_SNP [dm6]	A	G	2.451e^-4	0.687	NON_SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13920891	2R_13920891_SNP [dm3] 2R_18033386_SNP [dm6]	T	C	2.451e^-4	0.687	INTERGENIC
3R	11526403	3R_11526403_SNP [dm3] 3R_15700681_SNP [dm6]	A	G	2.456e^-4	0.688	INTERGENIC
2R	3749013	2R_3749013_SNP [dm3] 2R_7861508_SNP [dm6]	A	C	2.466e^-4	0.689	INTRON Dgk
2R	3847748	2R_3847748_SNP [dm3] 2R_7960243_SNP [dm6]	C	T	2.468e^-4	0.689	UTR_3_PRIME Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21111512	2L_21111512_SNP [dm3] 2L_21111512_SNP [dm6]	A	T	2.481e^-4	0.689	INTRON Nhe2
3L	10656305	3L_10656305_SNP [dm3] 3L_10663205_SNP [dm6]	G	A	2.483e^-4	0.689	UPSTREAM CG32068 DOWNSTREAM CG8003 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3L	1549105	3L_1549105_SNP [dm3] 3L_1549105_SNP [dm6]	T	A	2.483e^-4	0.689	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22297041	2L_22297041_SNP [dm3] 2L_22297041_SNP [dm6]	A	T	2.485e^-4	0.689	INTERGENIC	transposable element FlyBase
2R	7947542	2R_7947542_SNP [dm3] 2R_12060037_SNP [dm6]	T	C	2.486e^-4	0.689	INTRON Drep-3
3L	569508	3L_569508_SNP [dm3] 3L_569508_SNP [dm6]	G	T	2.502e^-4	0.692	INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7977376	3L_7977376_SNP [dm3] 3L_7984276_SNP [dm6]	G	A	2.508e^-4	0.693	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14421334	3R_14421334_SNP [dm3] 3R_18595612_SNP [dm6]	A	T	2.519e^-4	0.695	NON_SYNONYMOUS_CODING CG14304 INTRON qin & 1 other
X	13128813	X_13128813_SNP [dm3] X_13234780_SNP [dm6]	A	T	2.533e^-4	0.695	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	8104080	3R_8104080_SNP [dm3] 3R_12278358_SNP [dm6]	A	T	2.540e^-4	0.695	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	21392543	3R_21392543_SNP [dm3] 3R_25566821_SNP [dm6]	C	T	2.540e^-4	0.695	INTRON msi
3L	5416388	3L_5416388_SNP [dm3] 3L_5423288_SNP [dm6]	T	A	2.542e^-4	0.695	UPSTREAM CG34391 INTERGENIC
2R	19670739	2R_19670739_SNP [dm3] 2R_23783216_SNP [dm6]	G	T	2.547e^-4	0.695	INTRON CG9850
2R	6564198	2R_6564198_SNP [dm3] 2R_10676693_SNP [dm6]	C	T	2.554e^-4	0.695	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9444004	X_9444004_SNP [dm3] X_9549971_SNP [dm6]	C	G	2.555e^-4	0.695	INTRON CG32700
3R	7296528	3R_7296528_SNP [dm3] 3R_11470806_SNP [dm6]	T	G	2.565e^-4	0.695	INTERGENIC
3L	19288739	3L_19288739_SNP [dm3] 3L_19295639_SNP [dm6]	T	G	2.566e^-4	0.695	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16110341	2L_16110341_INS [dm3] 2L_16110341_INS [dm6]	A	ACA	2.571e^-4	0.695	INTERGENIC
2L	11334539	2L_11334539_DEL [dm3] 2L_11334539_DEL [dm6]	GGG	G	2.576e^-4	0.695	INTERGENIC
3R	20553366	3R_20553366_SNP [dm3] 3R_24727644_SNP [dm6]	C	T	2.583e^-4	0.695	INTRON tok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27236086	3R_27236086_SNP [dm3] 3R_31410364_SNP [dm6]	A	T	2.583e^-4	0.695	UTR_5_PRIME Gprk2 INTRON Gprk2
X	12936736	X_12936736_SNP [dm3] X_13042703_SNP [dm6]	A	T	2.584e^-4	0.695	INTRON rad
3R	13160822	3R_13160822_SNP [dm3] 3R_17335100_SNP [dm6]	T	G	2.584e^-4	0.695	INTRON beat-IIa
2R	7604381	2R_7604381_SNP [dm3] 2R_11716876_SNP [dm6]	T	A	2.586e^-4	0.695	INTRON pyr	TF binding site BDTNP1_TFBS_dl
3L	16317970	3L_16317970_SNP [dm3] 3L_16324870_SNP [dm6]	T	C	2.588e^-4	0.695	DOWNSTREAM CG13040 & 1 other INTERGENIC
3L	5360340	3L_5360340_SNP [dm3] 3L_5367240_SNP [dm6]	G	A	2.590e^-4	0.695	SYNONYMOUS_CODING Membrin DOWNSTREAM CG10635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11534118	3R_11534118_MNP [dm3] 3R_15708396_MNP [dm6]	CAC	TTG	2.590e^-4	0.695	UTR_3_PRIME CG5404
3L	5933257	3L_5933257_SNP [dm3] 3L_5940157_SNP [dm6]	G	A	2.603e^-4	0.695	INTRON CG33993
3R	11534134	3R_11534134_SNP [dm3] 3R_15708412_SNP [dm6]	T	A	2.604e^-4	0.695	UTR_3_PRIME CG5404
3L	16122149	3L_16122149_SNP [dm3] 3L_16129049_SNP [dm6]	A	C	2.604e^-4	0.695	UPSTREAM Pgm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11534135	3R_11534135_SNP [dm3] 3R_15708413_SNP [dm6]	G	A	2.606e^-4	0.695	UTR_3_PRIME CG5404
2L	3521052	2L_3521052_SNP [dm3] 2L_3521052_SNP [dm6]	G	C	2.611e^-4	0.695	NON_SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7413586	3L_7413586_SNP [dm3] 3L_7420486_SNP [dm6]	T	A	2.614e^-4	0.695	INTERGENIC
3L	13903924	3L_13903924_SNP [dm3] 3L_13910824_SNP [dm6]	C	T	2.626e^-4	0.695	INTRON Rgl
3R	11534116	3R_11534116_SNP [dm3] 3R_15708394_SNP [dm6]	A	T	2.640e^-4	0.695	UTR_3_PRIME CG5404
3R	27238130	3R_27238130_SNP [dm3] 3R_31412408_SNP [dm6]	A	T	2.645e^-4	0.695	INTRON Gprk2
3L	11641103	3L_11641103_SNP [dm3] 3L_11648003_SNP [dm6]	T	C	2.650e^-4	0.695	NON_SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20325958	2L_20325958_SNP [dm3] 2L_20325958_SNP [dm6]	G	T	2.651e^-4	0.695	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3866285	3L_3866285_SNP [dm3] 3L_3866285_SNP [dm6]	G	A	2.652e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7918956	X_7918956_INS [dm3] X_8024923_INS [dm6]	C	CC	2.654e^-4	0.695	INTRON Tbh
2L	20359352	2L_20359352_INS [dm3] 2L_20359352_INS [dm6]	C	CTC	2.655e^-4	0.695	UTR_3_PRIME RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
2L	6106995	2L_6106995_SNP [dm3] 2L_6106995_SNP [dm6]	G	T	2.658e^-4	0.695	INTRON stai
3L	8243294	3L_8243294_SNP [dm3] 3L_8250194_SNP [dm6]	A	C	2.662e^-4	0.695	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
3L	12846277	3L_12846277_SNP [dm3] 3L_12853177_SNP [dm6]	T	C	2.669e^-4	0.695	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3L	3700269	3L_3700269_SNP [dm3] 3L_3700269_SNP [dm6]	A	C	2.669e^-4	0.695	INTERGENIC
3L	7437973	3L_7437973_SNP [dm3] 3L_7444873_SNP [dm6]	C	T	2.670e^-4	0.695	INTRON CG42458
2L	20044948	2L_20044948_SNP [dm3] 2L_20044948_SNP [dm6]	G	A	2.671e^-4	0.695	INTRON sNPF
2L	13871645	2L_13871645_SNP [dm3] 2L_13871645_SNP [dm6]	G	A	2.678e^-4	0.695	INTRON CenG1A
2L	4508804	2L_4508804_SNP [dm3] 2L_4508804_SNP [dm6]	T	C	2.678e^-4	0.695	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22719064	3R_22719064_INS [dm3] 3R_26893342_INS [dm6]	C	CC	2.680e^-4	0.695	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2253847	3L_2253847_SNP [dm3] 3L_2253847_SNP [dm6]	T	G	2.685e^-4	0.695	SYNONYMOUS_CODING CG1275	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18642440	2R_18642440_SNP [dm3] 2R_22754935_SNP [dm6]	C	T	2.686e^-4	0.695	UPSTREAM CG13526 INTRON CG42260
2L	20317235	2L_20317235_SNP [dm3] 2L_20317235_SNP [dm6]	A	G	2.686e^-4	0.695	INTRON spir & 1 other
2R	6372516	2R_6372516_SNP [dm3] 2R_10485011_SNP [dm6]	T	G	2.694e^-4	0.696	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4499543	2R_4499543_SNP [dm3] 2R_8612038_SNP [dm6]	G	A	2.697e^-4	0.696	STOP_GAINED CG8642 UTR_3_PRIME rgr DOWNSTREAM rgr
3R	2748131	3R_2748131_DEL [dm3] 3R_6922409_DEL [dm6]	AA	A	2.701e^-4	0.696	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9212129	X_9212129_SNP [dm3] X_9318096_SNP [dm6]	G	A	2.713e^-4	0.697	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
2L	22262113	2L_22262113_SNP [dm3] 2L_22262113_SNP [dm6]	A	T	2.714e^-4	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	23516107	3R_23516107_SNP [dm3] 3R_27690385_SNP [dm6]	T	C	2.717e^-4	0.697	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	14658079	3R_14658079_SNP [dm3] 3R_18832357_SNP [dm6]	C	A	2.726e^-4	0.698	INTRON CG18208
3R	13819010	3R_13819010_SNP [dm3] 3R_17993288_SNP [dm6]	G	A	2.733e^-4	0.698	INTRON cpo	TF binding site mE1_TFBS_inv
2R	15991498	2R_15991498_DEL [dm3] 2R_20103993_DEL [dm6]	AGAAACTGTA	A	2.738e^-4	0.698	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	20323856	2L_20323856_SNP [dm3] 2L_20323856_SNP [dm6]	G	A	2.742e^-4	0.698	INTRON spir	TF binding site BDTNP1_TFBS_twi
3R	27235972	3R_27235972_SNP [dm3] 3R_31410250_SNP [dm6]	T	G	2.745e^-4	0.698	INTRON Gprk2
3L	14056600	3L_14056600_SNP [dm3] 3L_14063500_SNP [dm6]	A	G	2.746e^-4	0.698	INTRON CG32138
2R	4009898	2R_4009898_SNP [dm3] 2R_8122393_SNP [dm6]	C	T	2.747e^-4	0.698	UTR_5_PRIME Asap UPSTREAM Nup50	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24978492	3R_24978492_SNP [dm3] 3R_29152770_SNP [dm6]	C	T	2.758e^-4	0.7	SYNONYMOUS_CODING Slbp UPSTREAM ligatin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3980028	3L_3980028_SNP [dm3] 3L_3980028_SNP [dm6]	C	T	2.762e^-4	0.7	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6374552	3L_6374552_SNP [dm3] 3L_6381452_SNP [dm6]	C	T	2.768e^-4	0.701	INTERGENIC
3L	5917882	3L_5917882_SNP [dm3] 3L_5924782_SNP [dm6]	A	G	2.777e^-4	0.701	INTRON Vap-33B
3R	18590573	3R_18590573_SNP [dm3] 3R_22764851_SNP [dm6]	G	A	2.779e^-4	0.701	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3227596	2L_3227596_SNP [dm3] 2L_3227596_SNP [dm6]	T	C	2.783e^-4	0.702	INTERGENIC
2R	1242480	2R_1242480_SNP [dm3] 2R_5354975_SNP [dm6]	T	C	2.801e^-4	0.703	DOWNSTREAM CG10396 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	20317313	2L_20317313_SNP [dm3] 2L_20317313_SNP [dm6]	T	A	2.808e^-4	0.703	INTRON spir EXON CR43606
3L	12313442	3L_12313442_SNP [dm3] 3L_12320342_SNP [dm6]	T	C	2.808e^-4	0.703	INTERGENIC
2L	3459770	2L_3459770_SNP [dm3] 2L_3459770_SNP [dm6]	C	T	2.811e^-4	0.703	SYNONYMOUS_CODING Sec5 DOWNSTREAM CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18991842	3R_18991842_SNP [dm3] 3R_23166120_SNP [dm6]	T	C	2.814e^-4	0.703	INTERGENIC
3R	18211552	3R_18211552_SNP [dm3] 3R_22385830_SNP [dm6]	T	A	2.820e^-4	0.703	SYNONYMOUS_CODING CG43343 DOWNSTREAM CG5379	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20000870	2R_20000870_SNP [dm3] 2R_24113347_SNP [dm6]	A	C	2.821e^-4	0.703	INTRON CG4049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10814693	3R_10814693_SNP [dm3] 3R_14988971_SNP [dm6]	G	C	2.821e^-4	0.703	INTERGENIC
X	3973432	X_3973432_SNP [dm3] X_4079399_SNP [dm6]	C	T	2.822e^-4	0.703	INTRON CG43689	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10155305	2R_10155305_SNP [dm3] 2R_14267800_SNP [dm6]	T	A	2.825e^-4	0.703	UTR_5_PRIME CG8547 UPSTREAM CG8547 DOWNSTREAM SelD	TF binding site mE1_TFBS_Trl
3L	12846375	3L_12846375_SNP [dm3] 3L_12853275_SNP [dm6]	G	T	2.836e^-4	0.704	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3L	17392247	3L_17392247_SNP [dm3] 3L_17399147_SNP [dm6]	A	G	2.839e^-4	0.704	INTRON blot
X	17371001	X_17371001_SNP [dm3] X_17476968_SNP [dm6]	G	C	2.840e^-4	0.704	INTRON CG43658
3R	9675879	3R_9675879_SNP [dm3] 3R_13850157_SNP [dm6]	C	T	2.851e^-4	0.705	INTERGENIC
3R	17963041	3R_17963041_DEL [dm3] 3R_22137319_DEL [dm6]	TAACCCTTGGTAT...	T	2.852e^-4	0.705	INTRON SKIP
2L	18936291	2L_18936291_SNP [dm3] 2L_18936291_SNP [dm6]	T	C	2.861e^-4	0.705	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3434707	2L_3434707_SNP [dm3] 2L_3434707_SNP [dm6]	A	C	2.869e^-4	0.705	INTERGENIC
3R	8099021	3R_8099021_SNP [dm3] 3R_12273299_SNP [dm6]	C	T	2.871e^-4	0.705	SYNONYMOUS_CODING Sfp87B INTRON svp
3L	12823025	3L_12823025_SNP [dm3] 3L_12829925_SNP [dm6]	A	T	2.871e^-4	0.705	INTRON CG10960
3R	15024138	3R_15024138_SNP [dm3] 3R_19198416_SNP [dm6]	C	A	2.872e^-4	0.705	INTRON CG31475
2L	20136566	2L_20136566_SNP [dm3] 2L_20136566_SNP [dm6]	G	T	2.876e^-4	0.705	INTERGENIC
3R	25965098	3R_25965098_SNP [dm3] 3R_30139376_SNP [dm6]	G	A	2.893e^-4	0.708	INTRON AdoR
2R	15940813	2R_15940813_SNP [dm3] 2R_20053308_SNP [dm6]	G	A	2.897e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	19740116	3R_19740116_SNP [dm3] 3R_23914394_SNP [dm6]	A	T	2.899e^-4	0.708	INTRON sba	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	21030776	3R_21030776_SNP [dm3] 3R_25205054_SNP [dm6]	T	C	2.909e^-4	0.709	INTRON CG13654 & 1 other
3R	17776174	3R_17776174_SNP [dm3] 3R_21950452_SNP [dm6]	T	A	2.909e^-4	0.709	INTRON Eip93F	TF binding site mE1_TFBS_zfh1
2L	17236029	2L_17236029_SNP [dm3] 2L_17236029_SNP [dm6]	C	A	2.917e^-4	0.709	INTRON beat-IIIc
3L	20949476	3L_20949476_SNP [dm3] 3L_20956376_SNP [dm6]	A	G	2.927e^-4	0.709	SYNONYMOUS_CODING Sems UPSTREAM CG10588
3R	6009061	3R_6009061_SNP [dm3] 3R_10183339_SNP [dm6]	T	C	2.927e^-4	0.709	INTRON CG12814
3R	13870210	3R_13870210_SNP [dm3] 3R_18044488_SNP [dm6]	C	A	2.928e^-4	0.709	DOWNSTREAM htl INTERGENIC
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	2.930e^-4	0.709	INTRON spir & 1 other
3R	4743637	3R_4743637_SNP [dm3] 3R_8917915_SNP [dm6]	T	C	2.940e^-4	0.709	INTRON pyd
2R	8249570	2R_8249570_SNP [dm3] 2R_12362065_SNP [dm6]	T	A	2.954e^-4	0.709	SPLICE_SITE_REGION CG30043 INTRON CG30043
3R	13138071	3R_13138071_INS [dm3] 3R_17312349_INS [dm6]	A	AA	2.954e^-4	0.709	INTERGENIC
2L	10790968	2L_10790968_SNP [dm3] 2L_10790968_SNP [dm6]	G	C	2.955e^-4	0.709	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
X	18972069	X_18972069_INS [dm3] X_19078036_INS [dm6]	G	GCGGCGG	2.959e^-4	0.709
3L	4871967	3L_4871967_SNP [dm3] 3L_4871967_SNP [dm6]	C	T	2.963e^-4	0.709	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2479734	3L_2479734_SNP [dm3] 3L_2479734_SNP [dm6]	C	G	2.968e^-4	0.709	INTRON CG45186
X	5916260	X_5916260_SNP [dm3] X_6022227_SNP [dm6]	T	A	2.974e^-4	0.709	INTERGENIC
2R	15588170	2R_15588170_SNP [dm3] 2R_19700665_SNP [dm6]	G	T	2.982e^-4	0.709	SYNONYMOUS_CODING Obp56c	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	20317206	2L_20317206_SNP [dm3] 2L_20317206_SNP [dm6]	T	G	2.984e^-4	0.709	INTRON spir & 1 other
3L	4871975	3L_4871975_SNP [dm3] 3L_4871975_SNP [dm6]	A	G	2.987e^-4	0.709	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5095290	X_5095290_SNP [dm3] X_5201257_SNP [dm6]	A	T	2.998e^-4	0.709	INTRON rg & 1 other
2L	10381883	2L_10381883_SNP [dm3] 2L_10381883_SNP [dm6]	A	C	3.007e^-4	0.709	UTR_3_PRIME gny UPSTREAM CG5096 DOWNSTREAM gny
3R	17227802	3R_17227802_SNP [dm3] 3R_21402080_SNP [dm6]	G	C	3.008e^-4	0.709	NON_SYNONYMOUS_CODING CG43311	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17392984	3L_17392984_SNP [dm3] 3L_17399884_SNP [dm6]	T	A	3.008e^-4	0.709	DOWNSTREAM noe INTRON blot
3L	3995377	3L_3995377_SNP [dm3] 3L_3995377_SNP [dm6]	T	G	3.008e^-4	0.709	INTERGENIC
2L	10455724	2L_10455724_SNP [dm3] 2L_10455724_SNP [dm6]	G	A	3.010e^-4	0.709	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20488968	2L_20488968_SNP [dm3] 2L_20488968_SNP [dm6]	A	G	3.011e^-4	0.709	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	517569	3L_517569_SNP [dm3] 3L_517569_SNP [dm6]	C	T	3.016e^-4	0.709	INTRON klar
3L	12313498	3L_12313498_SNP [dm3] 3L_12320398_SNP [dm6]	G	T	3.017e^-4	0.709	INTERGENIC
2R	8299665	2R_8299665_SNP [dm3] 2R_12412160_SNP [dm6]	T	A	3.022e^-4	0.709	DOWNSTREAM CG33627 INTERGENIC
3L	13004774	3L_13004774_SNP [dm3] 3L_13011674_SNP [dm6]	C	A	3.024e^-4	0.709	UTR_5_PRIME CG11261 DOWNSTREAM MICAL-like
2R	16738843	2R_16738843_SNP [dm3] 2R_20851338_SNP [dm6]	G	A	3.031e^-4	0.709	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_sens
3L	10555424	3L_10555424_SNP [dm3] 3L_10562324_SNP [dm6]	T	A	3.033e^-4	0.709	INTRON A2bp1
3R	20693010	3R_20693010_INS [dm3] 3R_24867288_INS [dm6]	C	CAC	3.034e^-4	0.709	UTR_3_PRIME Ela DOWNSTREAM Ela & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8068973	3L_8068973_SNP [dm3] 3L_8075873_SNP [dm6]	G	A	3.036e^-4	0.709	INTRON Ect4
X	16934242	X_16934242_SNP [dm3] X_17040209_SNP [dm6]	A	C	3.048e^-4	0.709	INTRON CG45002
2L	20322090	2L_20322090_SNP [dm3] 2L_20322090_SNP [dm6]	A	G	3.053e^-4	0.709	INTRON spir	TF binding site mE1_TFBS_cad
2L	22293738	2L_22293738_SNP [dm3] 2L_22293738_SNP [dm6]	G	T	3.053e^-4	0.709	INTERGENIC
2L	21111580	2L_21111580_DEL [dm3] 2L_21111580_DEL [dm6]	TCCAC	G	3.054e^-4	0.709	INTRON Nhe2
2L	21111586	2L_21111586_DEL [dm3] 2L_21111586_DEL [dm6]	TCCAC	T	3.054e^-4	0.709	INTRON Nhe2
2L	20500347	2L_20500347_SNP [dm3] 2L_20500347_SNP [dm6]	G	T	3.059e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4957404	2L_4957404_SNP [dm3] 2L_4957404_SNP [dm6]	A	T	3.064e^-4	0.709	SPLICE_SITE_REGION Marcal1 INTRON Marcal1
3R	6305892	3R_6305892_SNP [dm3] 3R_10480170_SNP [dm6]	T	A	3.068e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17390056	3L_17390056_SNP [dm3] 3L_17396956_SNP [dm6]	A	G	3.070e^-4	0.709	SYNONYMOUS_CODING blot	TF binding site mE1_TFBS_HSA
3R	24502782	3R_24502782_SNP [dm3] 3R_28677060_SNP [dm6]	A	G	3.071e^-4	0.709	INTRON CG9990
3R	4052977	3R_4052977_SNP [dm3] 3R_8227255_SNP [dm6]	A	T	3.074e^-4	0.709	UPSTREAM CR45550 EXON CR45551	TF binding site mE1_TFBS_cad
3L	11814789	3L_11814789_SNP [dm3] 3L_11821689_SNP [dm6]	T	C	3.075e^-4	0.709	UTR_5_PRIME CG11597 INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	3505732	2L_3505732_SNP [dm3] 2L_3505732_SNP [dm6]	C	G	3.079e^-4	0.709	INTRON tim	TF binding site BDTNP1_TFBS_twi
3L	517322	3L_517322_SNP [dm3] 3L_517322_SNP [dm6]	G	T	3.080e^-4	0.709	INTRON klar
2R	3105252	2R_3105252_SNP [dm3] 2R_7217747_SNP [dm6]	T	A	3.098e^-4	0.71	INTRON pk	TF binding site mE1_TFBS_cad
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	3.102e^-4	0.71	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10146940	3R_10146940_SNP [dm3] 3R_14321218_SNP [dm6]	C	T	3.102e^-4	0.71	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
3L	12305980	3L_12305980_SNP [dm3] 3L_12312880_SNP [dm6]	T	A	3.103e^-4	0.71	DOWNSTREAM CG44355 INTERGENIC
3L	3702946	3L_3702946_SNP [dm3] 3L_3702946_SNP [dm6]	G	A	3.108e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14112527	3R_14112527_SNP [dm3] 3R_18286805_SNP [dm6]	T	G	3.116e^-4	0.712	UTR_3_PRIME CG7131 DOWNSTREAM CG8064
2R	8898193	2R_8898193_SNP [dm3] 2R_13010688_SNP [dm6]	A	T	3.138e^-4	0.713	INTERGENIC
3L	18395930	3L_18395930_SNP [dm3] 3L_18402830_SNP [dm6]	T	C	3.139e^-4	0.713	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15361498	X_15361498_SNP [dm3] X_15467465_SNP [dm6]	G	A	3.142e^-4	0.713	NON_SYNONYMOUS_CODING CG15642 UPSTREAM CG15641 DOWNSTREAM CG6299 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	19030572	3R_19030572_SNP [dm3] 3R_23204850_SNP [dm6]	T	A	3.148e^-4	0.713	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
X	7575952	X_7575952_INS [dm3] X_7681919_INS [dm6]	G	TATAAAT	3.149e^-4	0.713	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	13984635	3R_13984635_SNP [dm3] 3R_18158913_SNP [dm6]	A	T	3.150e^-4	0.713	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
2R	20138974	2R_20138974_SNP [dm3] 2R_24251451_SNP [dm6]	T	G	3.154e^-4	0.713	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2R	16320411	2R_16320411_SNP [dm3] 2R_20432906_SNP [dm6]	C	A	3.160e^-4	0.713	INTRON CG12484
2L	15736187	2L_15736187_DEL [dm3] 2L_15736187_DEL [dm6]	GGG	A	3.160e^-4	0.713	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11839693	3L_11839693_SNP [dm3] 3L_11846593_SNP [dm6]	A	C	3.162e^-4	0.713	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	3783969	3R_3783969_SNP [dm3] 3R_7958247_SNP [dm6]	T	C	3.162e^-4	0.713	INTRON dsx
2L	11703405	2L_11703405_SNP [dm3] 2L_11703405_SNP [dm6]	T	A	3.169e^-4	0.713	INTERGENIC
2L	20317110	2L_20317110_INS [dm3] 2L_20317110_INS [dm6]	T	TAGTATTTATATTTAGATTA...	3.170e^-4	0.713	INTRON spir & 1 other
3R	8099276	3R_8099276_SNP [dm3] 3R_12273554_SNP [dm6]	A	T	3.175e^-4	0.713	DOWNSTREAM Sfp87B INTRON svp
3R	20787820	3R_20787820_MNP [dm3] 3R_24962098_MNP [dm6]	TTA	GAT	3.183e^-4	0.713	INTERGENIC
X	8702772	X_8702772_SNP [dm3] X_8808739_SNP [dm6]	A	T	3.188e^-4	0.713	INTERGENIC
3R	13331639	3R_13331639_SNP [dm3] 3R_17505917_SNP [dm6]	G	A	3.190e^-4	0.713	UPSTREAM Dscam3 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13669578	3L_13669578_SNP [dm3] 3L_13676478_SNP [dm6]	G	T	3.191e^-4	0.713	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	6329655	2R_6329655_INS [dm3] 2R_10442150_INS [dm6]	C	CC	3.206e^-4	0.716	INTRON Galphao
2R	10170147	2R_10170147_SNP [dm3] 2R_14282642_SNP [dm6]	T	A	3.214e^-4	0.716	INTRON Ih
X	7226227	X_7226227_SNP [dm3] X_7332194_SNP [dm6]	G	A	3.220e^-4	0.716	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3L	19199086	3L_19199086_SNP [dm3] 3L_19205986_SNP [dm6]	A	T	3.222e^-4	0.716	INTRON fz2
2L	857932	2L_857932_SNP [dm3] 2L_857932_SNP [dm6]	T	G	3.228e^-4	0.716	DOWNSTREAM mir-375 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	4875832	3L_4875832_SNP [dm3] 3L_4875832_SNP [dm6]	G	A	3.229e^-4	0.716	SYNONYMOUS_CODING CG17150
X	19974406	X_19974406_SNP [dm3] X_20080373_SNP [dm6]	G	T	3.230e^-4	0.716	INTERGENIC
3R	26256477	3R_26256477_SNP [dm3] 3R_30430755_SNP [dm6]	C	T	3.232e^-4	0.716	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3L	2411787	3L_2411787_SNP [dm3] 3L_2411787_SNP [dm6]	T	A	3.237e^-4	0.716	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12567729	X_12567729_SNP [dm3] X_12673696_SNP [dm6]	G	A	3.243e^-4	0.716	INTRON Tis11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	10051906	X_10051906_SNP [dm3] X_10157873_SNP [dm6]	T	A	3.245e^-4	0.716	UPSTREAM CG43902 INTRON CR44894
2L	20069650	2L_20069650_SNP [dm3] 2L_20069650_SNP [dm6]	C	A	3.249e^-4	0.716	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	5569504	X_5569504_INS [dm3] X_5675471_INS [dm6]	T	TTCCCATATCCATATCCAT...	3.252e^-4	0.716	CODON_INSERTION Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24942028	3R_24942028_SNP [dm3] 3R_29116306_SNP [dm6]	A	T	3.255e^-4	0.716	UPSTREAM Atg14 DOWNSTREAM CG11876 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3L	12822073	3L_12822073_DEL [dm3] 3L_12828973_DEL [dm6]	TTC	T	3.280e^-4	0.718	INTRON CG10960
2R	19972742	2R_19972742_SNP [dm3] 2R_24085219_SNP [dm6]	A	G	3.293e^-4	0.718	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
X	4331747	X_4331747_SNP [dm3] X_4437714_SNP [dm6]	C	T	3.293e^-4	0.718	INTRON CR32773 & 1 other
3L	12821681	3L_12821681_SNP [dm3] 3L_12828581_SNP [dm6]	G	A	3.307e^-4	0.718	UPSTREAM CG10960 INTRON CG10960
3R	7264921	3R_7264921_SNP [dm3] 3R_11439199_SNP [dm6]	T	A	3.308e^-4	0.718	INTRON CG17230 & 1 other
X	3643321	X_3643321_SNP [dm3] X_3749288_SNP [dm6]	G	T	3.309e^-4	0.718	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8622437	3L_8622437_SNP [dm3] 3L_8629337_SNP [dm6]	C	T	3.311e^-4	0.718	UPSTREAM Zasp66 INTRON Zasp66	TF binding site BDTNP1_TFBS_da
3L	14705065	3L_14705065_SNP [dm3] 3L_14711965_SNP [dm6]	G	A	3.317e^-4	0.718	INTRON ome
3L	16122178	3L_16122178_SNP [dm3] 3L_16129078_SNP [dm6]	T	A	3.322e^-4	0.718	UPSTREAM Pgm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3L	16122179	3L_16122179_DEL [dm3] 3L_16129079_DEL [dm6]	GTGCGCTATTCAGA...	G	3.322e^-4	0.718	UPSTREAM Pgm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
X	10051883	X_10051883_SNP [dm3] X_10157850_SNP [dm6]	G	C	3.322e^-4	0.718	UPSTREAM CG43902 INTRON CR44894
3L	14350696	3L_14350696_SNP [dm3] 3L_14357596_SNP [dm6]	T	G	3.324e^-4	0.718	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12567741	X_12567741_DEL [dm3] X_12673708_DEL [dm6]	AAGTTCAA	A	3.327e^-4	0.718	INTRON Tis11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25127538	3R_25127538_DEL [dm3] 3R_29301816_DEL [dm6]	TCTGTTTTCTGAATT...	T	3.328e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10175147	2R_10175147_SNP [dm3] 2R_14287642_SNP [dm6]	C	T	3.330e^-4	0.718	UPSTREAM Ih INTRON Ih
2R	10816489	2R_10816489_SNP [dm3] 2R_14928984_SNP [dm6]	C	T	3.330e^-4	0.718	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15484723	2R_15484723_SNP [dm3] 2R_19597218_SNP [dm6]	A	C	3.330e^-4	0.718	DOWNSTREAM CG16716 INTRON sm
X	11049303	X_11049303_SNP [dm3] X_11155270_SNP [dm6]	A	C	3.340e^-4	0.718	INTRON Dlic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22343632	2L_22343632_SNP [dm3] 2L_22343632_SNP [dm6]	A	C	3.342e^-4	0.718	INTRON CG17018
3R	20787829	3R_20787829_DEL [dm3] 3R_24962107_DEL [dm6]	TTCC	T	3.347e^-4	0.718	INTERGENIC
3R	13984641	3R_13984641_SNP [dm3] 3R_18158919_SNP [dm6]	A	G	3.356e^-4	0.718	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3R	18991829	3R_18991829_SNP [dm3] 3R_23166107_SNP [dm6]	A	T	3.363e^-4	0.718	INTERGENIC
3R	4723715	3R_4723715_SNP [dm3] 3R_8897993_SNP [dm6]	C	T	3.366e^-4	0.718	INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14152608	2R_14152608_SNP [dm3] 2R_18265103_SNP [dm6]	T	C	3.379e^-4	0.718	INTERGENIC
3R	7977541	3R_7977541_SNP [dm3] 3R_12151819_SNP [dm6]	G	A	3.386e^-4	0.718	INTRON dpr15
3R	3783782	3R_3783782_SNP [dm3] 3R_7958060_SNP [dm6]	T	C	3.387e^-4	0.718	INTRON dsx
2R	4531383	2R_4531383_SNP [dm3] 2R_8643878_SNP [dm6]	G	A	3.403e^-4	0.718	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11519825	3R_11519825_SNP [dm3] 3R_15694103_SNP [dm6]	C	A	3.403e^-4	0.718	UTR_3_PRIME CG31446
3R	11533986	3R_11533986_INS [dm3] 3R_15708264_INS [dm6]	A	ACATATGTAAGA...	3.405e^-4	0.718	UTR_3_PRIME CG5404
2L	2714348	2L_2714348_SNP [dm3] 2L_2714348_SNP [dm6]	G	A	3.407e^-4	0.718	INTRON CG31690
2L	20069651	2L_20069651_SNP [dm3] 2L_20069651_SNP [dm6]	C	A	3.410e^-4	0.718	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	19284263	3L_19284263_SNP [dm3] 3L_19291163_SNP [dm6]	G	T	3.412e^-4	0.718	INTRON Gbs-76A
2R	17086470	2R_17086470_SNP [dm3] 2R_21198965_SNP [dm6]	C	A	3.412e^-4	0.718	INTRON Lapsyn
3L	2995851	3L_2995851_SNP [dm3] 3L_2995851_SNP [dm6]	G	C	3.414e^-4	0.718	NON_SYNONYMOUS_CODING CG2113
3L	7827356	3L_7827356_SNP [dm3] 3L_7834256_SNP [dm6]	A	G	3.416e^-4	0.718	INTRON Pdp1	TF binding site mE1_TFBS_Trl
3L	18267558	3L_18267558_SNP [dm3] 3L_18274458_SNP [dm6]	T	C	3.418e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_Kr
X	10798960	X_10798960_SNP [dm3] X_10904927_SNP [dm6]	G	A	3.419e^-4	0.718	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4850581	3R_4850581_SNP [dm3] 3R_9024859_SNP [dm6]	T	C	3.432e^-4	0.718	DOWNSTREAM CR31429 INTRON neur	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25984789	3R_25984789_INS [dm3] 3R_30159067_INS [dm6]	T	TT	3.437e^-4	0.718	INTRON CG11498
2L	5661788	2L_5661788_SNP [dm3] 2L_5661788_SNP [dm6]	G	A	3.437e^-4	0.718	DOWNSTREAM CR44821 INTERGENIC
3R	13061200	3R_13061200_SNP [dm3] 3R_17235478_SNP [dm6]	A	C	3.437e^-4	0.718	INTRON beat-IIb
3L	4189644	3L_4189644_SNP [dm3] 3L_4189644_SNP [dm6]	G	T	3.438e^-4	0.718	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4190303	3L_4190303_SNP [dm3] 3L_4190303_SNP [dm6]	C	T	3.438e^-4	0.718	UTR_5_PRIME tipE INTRON CG18675	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7575845	X_7575845_SNP [dm3] X_7681812_SNP [dm6]	A	C	3.446e^-4	0.718	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
2L	2310834	2L_2310834_SNP [dm3] 2L_2310834_SNP [dm6]	G	A	3.448e^-4	0.718	UTR_5_PRIME CG9967 UPSTREAM eys
3R	19039672	3R_19039672_SNP [dm3] 3R_23213950_SNP [dm6]	T	G	3.449e^-4	0.718	INTRON cnc	TF binding site mE1_TFBS_HSA
3L	14217752	3L_14217752_SNP [dm3] 3L_14224652_SNP [dm6]	G	C	3.451e^-4	0.718	INTRON nuf
2R	4010657	2R_4010657_SNP [dm3] 2R_8123152_SNP [dm6]	A	T	3.452e^-4	0.718	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12331688	X_12331688_SNP [dm3] X_12437655_SNP [dm6]	A	C	3.453e^-4	0.718	INTRON Pkcdelta
3L	1931864	3L_1931864_SNP [dm3] 3L_1931864_SNP [dm6]	G	A	3.462e^-4	0.718	INTRON Dbx
3R	11455531	3R_11455531_SNP [dm3] 3R_15629809_SNP [dm6]	C	T	3.469e^-4	0.718	INTERGENIC
2L	3433452	2L_3433452_INS [dm3] 2L_3433452_INS [dm6]	T	TT	3.479e^-4	0.718	INTERGENIC
2R	19998366	2R_19998366_SNP [dm3] 2R_24110843_SNP [dm6]	A	G	3.487e^-4	0.718	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad
2R	14152532	2R_14152532_SNP [dm3] 2R_18265027_SNP [dm6]	G	C	3.491e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7226166	2R_7226166_SNP [dm3] 2R_11338661_SNP [dm6]	C	A	3.495e^-4	0.718	NON_SYNONYMOUS_CODING kappaTry DOWNSTREAM lambdaTry & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10940657	2L_10940657_SNP [dm3] 2L_10940657_SNP [dm6]	G	A	3.502e^-4	0.718	INTRON dpr2
3R	20787800	3R_20787800_INS [dm3] 3R_24962078_INS [dm6]	A	AGCA	3.504e^-4	0.718	INTERGENIC
3R	20787802	3R_20787802_MNP [dm3] 3R_24962080_MNP [dm6]	TGGG	ACCC	3.504e^-4	0.718	INTERGENIC
3R	20787808	3R_20787808_MNP [dm3] 3R_24962086_MNP [dm6]	ATT	TGG	3.504e^-4	0.718	INTERGENIC
2L	12076614	2L_12076614_SNP [dm3] 2L_12076614_SNP [dm6]	G	C	3.519e^-4	0.718	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12076618	2L_12076618_DEL [dm3] 2L_12076618_DEL [dm6]	AT	C	3.519e^-4	0.718	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19031760	3R_19031760_DEL [dm3] 3R_23206038_DEL [dm6]	AG	A	3.519e^-4	0.718	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	19469758	2R_19469758_SNP [dm3] 2R_23582235_SNP [dm6]	C	A	3.521e^-4	0.718	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19455204	2R_19455204_SNP [dm3] 2R_23567681_SNP [dm6]	C	A	3.527e^-4	0.718	UPSTREAM apt INTRON apt
3L	2882861	3L_2882861_SNP [dm3] 3L_2882861_SNP [dm6]	G	A	3.530e^-4	0.718	DOWNSTREAM spz5 EXON CR44531	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	5939364	3L_5939364_SNP [dm3] 3L_5946264_SNP [dm6]	C	T	3.535e^-4	0.718	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	14754926	2L_14754926_SNP [dm3] 2L_14754926_SNP [dm6]	A	G	3.545e^-4	0.718	INTERGENIC
3L	13994032	3L_13994032_SNP [dm3] 3L_14000932_SNP [dm6]	T	C	3.548e^-4	0.718	SYNONYMOUS_CODING CG8783	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4188648	3L_4188648_SNP [dm3] 3L_4188648_SNP [dm6]	G	A	3.548e^-4	0.718	UTR_5_PRIME tipE UPSTREAM Teh2 INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	11528524	3R_11528524_SNP [dm3] 3R_15702802_SNP [dm6]	A	C	3.550e^-4	0.718	INTERGENIC
2R	3848480	2R_3848480_SNP [dm3] 2R_7960975_SNP [dm6]	G	C	3.550e^-4	0.718	SYNONYMOUS_CODING Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	15506105	2L_15506105_SNP [dm3] 2L_15506105_SNP [dm6]	C	T	3.551e^-4	0.718	INTERGENIC
2L	20123089	2L_20123089_SNP [dm3] 2L_20123089_SNP [dm6]	G	C	3.553e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18362235	3L_18362235_SNP [dm3] 3L_18369135_SNP [dm6]	A	G	3.553e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	759452	3L_759452_SNP [dm3] 3L_759452_SNP [dm6]	G	A	3.555e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	21112099	2L_21112099_SNP [dm3] 2L_21112099_SNP [dm6]	A	G	3.558e^-4	0.718	INTRON Nhe2
3L	4192419	3L_4192419_DEL [dm3] 3L_4192419_DEL [dm6]	GCG	G	3.569e^-4	0.72	UTR_3_PRIME tipE & 1 other
2R	18129416	2R_18129416_SNP [dm3] 2R_22241911_SNP [dm6]	A	G	3.580e^-4	0.72	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3L	11839318	3L_11839318_SNP [dm3] 3L_11846218_SNP [dm6]	A	T	3.580e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	487237	3L_487237_SNP [dm3] 3L_487237_SNP [dm6]	C	A	3.584e^-4	0.721	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8080844	3L_8080844_SNP [dm3] 3L_8087744_SNP [dm6]	C	T	3.591e^-4	0.721	UTR_3_PRIME CG7565 INTRON Ect4
3R	18481985	3R_18481985_SNP [dm3] 3R_22656263_SNP [dm6]	G	A	3.597e^-4	0.721	INTRON CG45058
3L	16008031	3L_16008031_DEL [dm3] 3L_16014931_DEL [dm6]	AAA	A	3.602e^-4	0.721	INTERGENIC
2R	10417996	2R_10417996_DEL [dm3] 2R_14530491_DEL [dm6]	TCATATTCTTAA...	T	3.613e^-4	0.721	INTRON ttv
2R	10418031	2R_10418031_SNP [dm3] 2R_14530526_SNP [dm6]	G	T	3.613e^-4	0.721	INTRON ttv
3L	11431982	3L_11431982_SNP [dm3] 3L_11438882_SNP [dm6]	G	A	3.618e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3487249	2L_3487249_SNP [dm3] 2L_3487249_SNP [dm6]	G	A	3.618e^-4	0.721	INTRON CG15414
2L	20602495	2L_20602495_SNP [dm3] 2L_20602495_SNP [dm6]	A	C	3.621e^-4	0.721	INTRON CR44909
2L	4764518	2L_4764518_INS [dm3] 2L_4764518_INS [dm6]	G	GG	3.624e^-4	0.721	DOWNSTREAM CG42523 INTRON CG15630
X	7576379	X_7576379_SNP [dm3] X_7682346_SNP [dm6]	A	G	3.625e^-4	0.721	UTR_3_PRIME CHES-1-like
3R	11533976	3R_11533976_SNP [dm3] 3R_15708254_SNP [dm6]	G	A	3.627e^-4	0.721	UTR_3_PRIME CG5404
3R	11604750	3R_11604750_SNP [dm3] 3R_15779028_SNP [dm6]	T	C	3.640e^-4	0.721	UPSTREAM CG5614 INTERGENIC
3L	17243753	3L_17243753_DEL [dm3] 3L_17250653_DEL [dm6]	TG	C	3.653e^-4	0.721	INTRON CR43870
3L	5360957	3L_5360957_SNP [dm3] 3L_5367857_SNP [dm6]	T	C	3.659e^-4	0.721	DOWNSTREAM Membrin INTRON CG10635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6004865	3R_6004865_SNP [dm3] 3R_10179143_SNP [dm6]	T	G	3.661e^-4	0.721	INTRON CG12814
2R	17667621	2R_17667621_SNP [dm3] 2R_21780116_SNP [dm6]	G	A	3.663e^-4	0.721	INTERGENIC
2L	16193649	2L_16193649_SNP [dm3] 2L_16193649_SNP [dm6]	A	C	3.668e^-4	0.721	INTERGENIC
X	8893010	X_8893010_SNP [dm3] X_8998977_SNP [dm6]	A	C	3.674e^-4	0.721	INTRON rdgA & 1 other
3L	4873160	3L_4873160_SNP [dm3] 3L_4873160_SNP [dm6]	G	A	3.678e^-4	0.721	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20839092	X_20839092_SNP [dm3] X_20968065_SNP [dm6]	C	A	3.678e^-4	0.721	INTERGENIC
3L	19220699	3L_19220699_SNP [dm3] 3L_19227599_SNP [dm6]	C	T	3.689e^-4	0.721	INTRON fz2
3R	11366910	3R_11366910_SNP [dm3] 3R_15541188_SNP [dm6]	A	T	3.692e^-4	0.721	INTRON CG18519	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4743210	3R_4743210_SNP [dm3] 3R_8917488_SNP [dm6]	C	T	3.695e^-4	0.721	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14266210	X_14266210_SNP [dm3] X_14372177_SNP [dm6]	T	C	3.697e^-4	0.721	INTRON dpr8
2R	3322383	2R_3322383_SNP [dm3] 2R_7434878_SNP [dm6]	C	T	3.697e^-4	0.721	DOWNSTREAM so INTERGENIC
X	12936008	X_12936008_SNP [dm3] X_13041975_SNP [dm6]	G	T	3.701e^-4	0.721	INTRON rad
X	4139795	X_4139795_SNP [dm3] X_4245762_SNP [dm6]	G	A	3.705e^-4	0.721	NON_SYNONYMOUS_CODING Muc4B	TF binding site mE1_TFBS_sens
3R	808719	3R_808719_SNP [dm3] 3R_4982997_SNP [dm6]	G	C	3.709e^-4	0.721	NON_SYNONYMOUS_CODING CG14662 EXON CR43478	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7336950	2L_7336950_SNP [dm3] 2L_7336950_SNP [dm6]	A	T	3.710e^-4	0.721	INTRON Wnt6
2L	20421603	2L_20421603_SNP [dm3] 2L_20421603_SNP [dm6]	G	T	3.713e^-4	0.721	UPSTREAM snoRNA:Psi18S-525i & 2 others DOWNSTREAM snoRNA:Psi18S-640e & 2 others INTRON Arpc2
2R	16966482	2R_16966482_SNP [dm3] 2R_21078977_SNP [dm6]	A	T	3.716e^-4	0.721	INTRON Treh
2L	12076910	2L_12076910_SNP [dm3] 2L_12076910_SNP [dm6]	A	T	3.717e^-4	0.721	NON_SYNONYMOUS_CODING CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	11533966	3R_11533966_SNP [dm3] 3R_15708244_SNP [dm6]	A	T	3.723e^-4	0.721	UTR_3_PRIME CG5404
3R	11533984	3R_11533984_SNP [dm3] 3R_15708262_SNP [dm6]	G	C	3.723e^-4	0.721	UTR_3_PRIME CG5404
2R	19979079	2R_19979079_SNP [dm3] 2R_24091556_SNP [dm6]	G	C	3.727e^-4	0.721	SYNONYMOUS_CODING snama DOWNSTREAM gek
3R	11457004	3R_11457004_SNP [dm3] 3R_15631282_SNP [dm6]	C	G	3.728e^-4	0.721	INTERGENIC
2L	5593001	2L_5593001_SNP [dm3] 2L_5593001_SNP [dm6]	A	G	3.731e^-4	0.721	INTERGENIC
3R	13282868	3R_13282868_SNP [dm3] 3R_17457146_SNP [dm6]	T	C	3.742e^-4	0.722	UPSTREAM CG14330 INTERGENIC
3R	18590337	3R_18590337_SNP [dm3] 3R_22764615_SNP [dm6]	C	A	3.742e^-4	0.722	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8372946	3R_8372946_SNP [dm3] 3R_12547224_SNP [dm6]	G	C	3.743e^-4	0.722	INTRON Octbeta3R
2L	7162943	2L_7162943_SNP [dm3] 2L_7162943_SNP [dm6]	C	G	3.765e^-4	0.724	INTERGENIC
3R	10411462	3R_10411462_SNP [dm3] 3R_14585740_SNP [dm6]	G	C	3.767e^-4	0.724	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	14665625	3L_14665625_SNP [dm3] 3L_14672525_SNP [dm6]	A	T	3.768e^-4	0.724	UPSTREAM ome & 1 other DOWNSTREAM dlp INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11529937	3R_11529937_INS [dm3] 3R_15704215_INS [dm6]	GT	ACAAG	3.773e^-4	0.724	UPSTREAM CG5404 INTERGENIC
2L	19843558	2L_19843558_SNP [dm3] 2L_19843558_SNP [dm6]	G	A	3.784e^-4	0.725	INTRON sick
2L	10825100	2L_10825100_SNP [dm3] 2L_10825100_SNP [dm6]	G	C	3.792e^-4	0.725	INTRON Nos
3L	8243419	3L_8243419_SNP [dm3] 3L_8250319_SNP [dm6]	T	G	3.800e^-4	0.725	INTRON Dscam4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11622276	2R_11622276_SNP [dm3] 2R_15734771_SNP [dm6]	T	C	3.800e^-4	0.725	UPSTREAM CG30089 INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	4741426	3R_4741426_INS [dm3] 3R_8915704_INS [dm6]	A	AA	3.801e^-4	0.725	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5658198	3R_5658198_SNP [dm3] 3R_9832476_SNP [dm6]	A	G	3.808e^-4	0.725	INTRON Teh1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17996962	2L_17996962_SNP [dm3] 2L_17996962_SNP [dm6]	C	A	3.814e^-4	0.725	INTERGENIC
X	8714909	X_8714909_DEL [dm3] X_8820876_DEL [dm6]	CC	C	3.814e^-4	0.725	INTERGENIC
2R	10170172	2R_10170172_SNP [dm3] 2R_14282667_SNP [dm6]	T	A	3.816e^-4	0.725	INTRON Ih
2R	7654551	2R_7654551_SNP [dm3] 2R_11767046_SNP [dm6]	C	G	3.818e^-4	0.725	INTRON ths
3R	26985710	3R_26985710_SNP [dm3] 3R_31159988_SNP [dm6]	T	C	3.823e^-4	0.726	INTRON Gycbeta100B & 1 other
3L	1086910	3L_1086910_SNP [dm3] 3L_1086910_SNP [dm6]	T	C	3.828e^-4	0.726	INTRON bab1
3L	11926285	3L_11926285_SNP [dm3] 3L_11933185_SNP [dm6]	C	A	3.831e^-4	0.726	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10940614	2L_10940614_INS [dm3] 2L_10940614_INS [dm6]	T	TGAAGT	3.835e^-4	0.726	INTRON dpr2
3R	11366927	3R_11366927_INS [dm3] 3R_15541205_INS [dm6]	T	TAAGAAAAA	3.840e^-4	0.726	INTRON CG18519	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12460300	2R_12460300_SNP [dm3] 2R_16572795_SNP [dm6]	A	C	3.843e^-4	0.726	INTRON CG4927
2L	20317281	2L_20317281_SNP [dm3] 2L_20317281_SNP [dm6]	G	T	3.851e^-4	0.727	INTRON spir & 1 other
3L	13004683	3L_13004683_DEL [dm3] 3L_13011583_DEL [dm6]	AG	A	3.862e^-4	0.728	UTR_5_PRIME CG11261 DOWNSTREAM MICAL-like
3L	12313579	3L_12313579_SNP [dm3] 3L_12320479_SNP [dm6]	C	A	3.864e^-4	0.728	INTERGENIC
2L	13730630	2L_13730630_SNP [dm3] 2L_13730630_SNP [dm6]	G	A	3.875e^-4	0.728	INTERGENIC
3R	12396134	3R_12396134_SNP [dm3] 3R_16570412_SNP [dm6]	A	G	3.887e^-4	0.728	UTR_3_PRIME CG42342 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4870727	3L_4870727_SNP [dm3] 3L_4870727_SNP [dm6]	T	C	3.887e^-4	0.728	SYNONYMOUS_CODING CG17150
3R	10359296	3R_10359296_SNP [dm3] 3R_14533574_SNP [dm6]	T	G	3.890e^-4	0.728	INTRON Pde6

Missing results

By genomic position
Variant impact
Gene name

mn_StarvationRes_ADJ phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results