DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.794e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2637 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2711053	3L_2711053_SNP [dm3] 3L_2711053_SNP [dm6]	T	G	6.294e^-8	0.101	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19030449	3R_19030449_INS [dm3] 3R_23204727_INS [dm6]	G	GTT	1.078e^-7	0.101	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	4.211e^-7	0.263	SYNONYMOUS_CODING CG16798
3L	1893928	3L_1893928_SNP [dm3] 3L_1893928_SNP [dm6]	T	C	7.483e^-7	0.33	SYNONYMOUS_CODING CG1887
X	16934242	X_16934242_SNP [dm3] X_17040209_SNP [dm6]	A	C	9.500e^-7	0.33	INTRON CG45002
2L	20141865	2L_20141865_INS [dm3] 2L_20141865_INS [dm6]	A	ACTTTCTAAGCCAGAAA...	1.054e^-6	0.33	INTERGENIC
2L	20145355	2L_20145355_SNP [dm3] 2L_20145355_SNP [dm6]	A	T	1.670e^-6	0.442	INTERGENIC
2R	8587286	2R_8587286_SNP [dm3] 2R_12699781_SNP [dm6]	C	T	1.886e^-6	0.442	UPSTREAM wuc INTERGENIC
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	2.390e^-6	0.461	DOWNSTREAM CG9928 INTERGENIC
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	2.458e^-6	0.461	INTRON CG17150
3L	19220699	3L_19220699_SNP [dm3] 3L_19227599_SNP [dm6]	C	T	3.255e^-6	0.51	INTRON fz2
4	527078	4_527078_SNP [dm3] 4_506452_SNP [dm6]	C	A	4.814e^-6	0.51	INTRON zfh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20137590	2L_20137590_SNP [dm3] 2L_20137590_SNP [dm6]	T	C	4.931e^-6	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9634476	2R_9634476_SNP [dm3] 2R_13746971_SNP [dm6]	A	T	5.301e^-6	0.51	UTR_3_PRIME fas
X	7918956	X_7918956_INS [dm3] X_8024923_INS [dm6]	C	CC	5.355e^-6	0.51	INTRON Tbh
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	6.121e^-6	0.51	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10381181	2L_10381181_SNP [dm3] 2L_10381181_SNP [dm6]	C	T	6.262e^-6	0.51	SYNONYMOUS_CODING gny
3L	18395930	3L_18395930_SNP [dm3] 3L_18402830_SNP [dm6]	T	C	6.349e^-6	0.51	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20141508	2L_20141508_SNP [dm3] 2L_20141508_SNP [dm6]	C	A	6.582e^-6	0.51	INTERGENIC
2L	20350998	2L_20350998_SNP [dm3] 2L_20350998_SNP [dm6]	C	A	6.683e^-6	0.51	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	6.849e^-6	0.51	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2L	20289085	2L_20289085_SNP [dm3] 2L_20289085_SNP [dm6]	G	A	7.048e^-6	0.51	INTERGENIC
2R	15824896	2R_15824896_SNP [dm3] 2R_19937391_SNP [dm6]	C	T	7.397e^-6	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	975816	2L_975816_SNP [dm3] 2L_975816_SNP [dm6]	T	C	7.522e^-6	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	14266213	X_14266213_DEL [dm3] X_14372180_DEL [dm6]	TT	T	7.592e^-6	0.51	INTRON dpr8
2R	8587287	2R_8587287_SNP [dm3] 2R_12699782_SNP [dm6]	A	T	7.703e^-6	0.51	UPSTREAM wuc INTERGENIC
2R	9634475	2R_9634475_SNP [dm3] 2R_13746970_SNP [dm6]	T	A	8.487e^-6	0.51	UTR_3_PRIME fas
X	8625700	X_8625700_SNP [dm3] X_8731667_SNP [dm6]	C	A	8.540e^-6	0.51	INTERGENIC
3L	2564275	3L_2564275_SNP [dm3] 3L_2564275_SNP [dm6]	T	C	8.812e^-6	0.51	INTRON msn
2L	20268713	2L_20268713_SNP [dm3] 2L_20268713_SNP [dm6]	T	C	9.332e^-6	0.51	INTERGENIC
3L	7144216	3L_7144216_SNP [dm3] 3L_7151116_SNP [dm6]	G	T	9.357e^-6	0.51	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19982478	2R_19982478_SNP [dm3] 2R_24094955_SNP [dm6]	C	A	9.390e^-6	0.51	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9632540	2R_9632540_SNP [dm3] 2R_13745035_SNP [dm6]	A	G	9.594e^-6	0.51	INTRON fas	TF binding site mE1_TFBS_chinmo
X	10943443	X_10943443_SNP [dm3] X_11049410_SNP [dm6]	C	A	9.745e^-6	0.51	UTR_3_PRIME CG11160
2L	20376524	2L_20376524_SNP [dm3] 2L_20376524_SNP [dm6]	C	T	1.007e^-5	0.51	DOWNSTREAM CG16798 INTERGENIC
3R	22295861	3R_22295861_SNP [dm3] 3R_26470139_SNP [dm6]	T	A	1.074e^-5	0.51	UTR_3_PRIME plum DOWNSTREAM CG5455 & 1 other
3L	9351341	3L_9351341_SNP [dm3] 3L_9358241_SNP [dm6]	C	A	1.097e^-5	0.51	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19581203	3R_19581203_SNP [dm3] 3R_23755481_SNP [dm6]	G	A	1.107e^-5	0.51	SPLICE_SITE_REGION Hrd3 DOWNSTREAM Rpt5 INTRON Hrd3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19581368	3R_19581368_SNP [dm3] 3R_23755646_SNP [dm6]	T	C	1.113e^-5	0.51	SYNONYMOUS_CODING Hrd3
3R	24818634	3R_24818634_SNP [dm3] 3R_28992912_SNP [dm6]	C	T	1.116e^-5	0.51	DOWNSTREAM wat INTERGENIC
2R	15824738	2R_15824738_SNP [dm3] 2R_19937233_SNP [dm6]	A	G	1.157e^-5	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13072510	2R_13072510_SNP [dm3] 2R_17185005_SNP [dm6]	C	T	1.159e^-5	0.51	UPSTREAM CR44387 INTERGENIC
2L	1833042	2L_1833042_SNP [dm3] 2L_1833042_SNP [dm6]	T	C	1.179e^-5	0.51	UPSTREAM c-cup INTERGENIC
2L	10381226	2L_10381226_SNP [dm3] 2L_10381226_SNP [dm6]	G	C	1.212e^-5	0.51	NON_SYNONYMOUS_CODING gny
3L	1392230	3L_1392230_SNP [dm3] 3L_1392230_SNP [dm6]	A	T	1.225e^-5	0.51	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5332184	X_5332184_SNP [dm3] X_5438151_SNP [dm6]	A	C	1.260e^-5	0.514	INTERGENIC
X	14266210	X_14266210_SNP [dm3] X_14372177_SNP [dm6]	T	C	1.287e^-5	0.514	INTRON dpr8
2L	20262953	2L_20262953_SNP [dm3] 2L_20262953_SNP [dm6]	T	A	1.401e^-5	0.524	DOWNSTREAM CG17570 INTERGENIC
3L	15842494	3L_15842494_SNP [dm3] 3L_15849394_SNP [dm6]	A	G	1.431e^-5	0.524	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	4815100	2R_4815100_SNP [dm3] 2R_8927595_SNP [dm6]	G	A	1.518e^-5	0.524	NON_SYNONYMOUS_CODING CG8235 UPSTREAM PAN2 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5360340	3L_5360340_SNP [dm3] 3L_5367240_SNP [dm6]	G	A	1.523e^-5	0.524	SYNONYMOUS_CODING Membrin DOWNSTREAM CG10635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	11232526	X_11232526_SNP [dm3] X_11338493_SNP [dm6]	C	T	1.530e^-5	0.524	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2L	20141079	2L_20141079_SNP [dm3] 2L_20141079_SNP [dm6]	T	A	1.540e^-5	0.524	INTERGENIC
3L	8144047	3L_8144047_SNP [dm3] 3L_8150947_SNP [dm6]	G	T	1.562e^-5	0.524	INTRON CG13676
2R	1329678	2R_1329678_SNP [dm3] 2R_5442173_SNP [dm6]	A	G	1.586e^-5	0.524	INTRON laccase2
2R	9629187	2R_9629187_SNP [dm3] 2R_13741682_SNP [dm6]	G	A	1.593e^-5	0.524	INTRON fas
2L	20135767	2L_20135767_SNP [dm3] 2L_20135767_SNP [dm6]	C	G	1.614e^-5	0.524	UPSTREAM CG10651 INTERGENIC
3L	5186720	3L_5186720_SNP [dm3] 3L_5193620_SNP [dm6]	A	G	1.659e^-5	0.524	INTRON shep
2L	20132606	2L_20132606_SNP [dm3] 2L_20132606_SNP [dm6]	C	A	1.660e^-5	0.524	INTERGENIC	TF binding site mE1_TFBS_inv
4	527079	4_527079_SNP [dm3] 4_506453_SNP [dm6]	C	A	1.676e^-5	0.524	INTRON zfh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	1.706e^-5	0.525	UTR_3_PRIME laccase2
3R	10157048	3R_10157048_SNP [dm3] 3R_14331326_SNP [dm6]	A	T	1.775e^-5	0.533	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10407335	2R_10407335_SNP [dm3] 2R_14519830_SNP [dm6]	T	C	1.797e^-5	0.533	INTERGENIC
3R	19030436	3R_19030436_SNP [dm3] 3R_23204714_SNP [dm6]	T	C	1.930e^-5	0.533	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2L	20243884	2L_20243884_SNP [dm3] 2L_20243884_SNP [dm6]	C	G	1.951e^-5	0.533	INTERGENIC
2L	20213753	2L_20213753_SNP [dm3] 2L_20213753_SNP [dm6]	A	G	1.957e^-5	0.533	INTERGENIC	transposable element FlyBase
3L	13882409	3L_13882409_SNP [dm3] 3L_13889309_SNP [dm6]	T	C	1.963e^-5	0.533	INTRON dysc
3L	18423295	3L_18423295_SNP [dm3] 3L_18430195_SNP [dm6]	T	A	1.977e^-5	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12145223	3R_12145223_SNP [dm3] 3R_16319501_SNP [dm6]	C	T	1.980e^-5	0.533	INTRON Sulf1
2R	4772596	2R_4772596_DEL [dm3] 2R_8885091_DEL [dm6]	TGGCCAAT	T	1.988e^-5	0.533	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6263524	X_6263524_SNP [dm3] X_6369491_SNP [dm6]	C	A	2.026e^-5	0.533	INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9625837	2R_9625837_SNP [dm3] 2R_13738332_SNP [dm6]	G	A	2.046e^-5	0.533	INTRON fas
3R	17333789	3R_17333789_SNP [dm3] 3R_21508067_SNP [dm6]	T	A	2.109e^-5	0.539	INTRON C15
3L	2711113	3L_2711113_SNP [dm3] 3L_2711113_SNP [dm6]	G	C	2.154e^-5	0.539	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19996423	2R_19996423_SNP [dm3] 2R_24108900_SNP [dm6]	G	T	2.154e^-5	0.539	SYNONYMOUS_CODING CG4049
2L	20481728	2L_20481728_DEL [dm3] 2L_20481728_DEL [dm6]	AA	A	2.251e^-5	0.556	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19976766	2R_19976766_SNP [dm3] 2R_24089243_SNP [dm6]	A	G	2.282e^-5	0.556	NON_SYNONYMOUS_CODING snama
2R	10470803	2R_10470803_INS [dm3] 2R_14583298_INS [dm6]	C	CC	2.339e^-5	0.562	SPLICE_SITE_REGION ttv INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15464535	3R_15464535_SNP [dm3] 3R_19638813_SNP [dm6]	T	G	2.464e^-5	0.581	INTRON subdued
X	14266222	X_14266222_SNP [dm3] X_14372189_SNP [dm6]	A	T	2.566e^-5	0.581	INTRON dpr8
X	18468759	X_18468759_DEL [dm3] X_18574726_DEL [dm6]	AAATAATAGAATAGAATAAA...	A	2.597e^-5	0.581	INTERGENIC
2L	8197316	2L_8197316_SNP [dm3] 2L_8197316_SNP [dm6]	G	A	2.617e^-5	0.581	SYNONYMOUS_CODING CG8460 UPSTREAM CG8475 DOWNSTREAM CR44116	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20379286	2L_20379286_SNP [dm3] 2L_20379286_SNP [dm6]	G	T	2.627e^-5	0.581	NON_SYNONYMOUS_CODING CG16798
2L	20483608	2L_20483608_SNP [dm3] 2L_20483608_SNP [dm6]	G	C	2.679e^-5	0.581	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2L	20141313	2L_20141313_SNP [dm3] 2L_20141313_SNP [dm6]	A	T	2.714e^-5	0.581	INTERGENIC
2L	11269671	2L_11269671_SNP [dm3] 2L_11269671_SNP [dm6]	G	C	2.768e^-5	0.581	UPSTREAM cana & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12846277	3L_12846277_SNP [dm3] 3L_12853177_SNP [dm6]	T	C	2.783e^-5	0.581	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3L	5372027	3L_5372027_DEL [dm3] 3L_5378927_DEL [dm6]	GG	G	2.819e^-5	0.581	DOWNSTREAM CR45743 INTRON Ir64a
2L	19690361	2L_19690361_SNP [dm3] 2L_19690361_SNP [dm6]	A	C	2.836e^-5	0.581	INTRON Lar
2L	20252350	2L_20252350_SNP [dm3] 2L_20252350_SNP [dm6]	G	T	2.842e^-5	0.581	INTERGENIC
2L	10381472	2L_10381472_SNP [dm3] 2L_10381472_SNP [dm6]	A	G	2.849e^-5	0.581	SYNONYMOUS_CODING gny UPSTREAM CG5096
2L	20134127	2L_20134127_SNP [dm3] 2L_20134127_SNP [dm6]	C	T	2.850e^-5	0.581	NON_SYNONYMOUS_CODING CG10651
3L	3633899	3L_3633899_DEL [dm3] 3L_3633899_DEL [dm6]	TCTTGGA	T	3.065e^-5	0.586	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2718736	3L_2718736_SNP [dm3] 3L_2718736_SNP [dm6]	T	A	3.071e^-5	0.586	UTR_3_PRIME Mrtf DOWNSTREAM Mrtf
2L	20322443	2L_20322443_SNP [dm3] 2L_20322443_SNP [dm6]	T	A	3.182e^-5	0.586	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19907144	3R_19907144_SNP [dm3] 3R_24081422_SNP [dm6]	G	A	3.208e^-5	0.586	INTRON 4EHP
3L	6760804	3L_6760804_SNP [dm3] 3L_6767704_SNP [dm6]	G	A	3.237e^-5	0.586	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	21211650	3R_21211650_SNP [dm3] 3R_25385928_SNP [dm6]	T	A	3.274e^-5	0.586	INTRON Fur1
3R	17789945	3R_17789945_SNP [dm3] 3R_21964223_SNP [dm6]	G	A	3.320e^-5	0.586	INTRON Eip93F
X	11232407	X_11232407_SNP [dm3] X_11338374_SNP [dm6]	C	T	3.372e^-5	0.586	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.915e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07615

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.1764	0.0229

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2397 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19030449	3R_19030449_INS [dm3] 3R_23204727_INS [dm6]	G	GTT	1.773e^-7	0.332	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	8.262e^-7	0.584	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2R	19982478	2R_19982478_SNP [dm3] 2R_24094955_SNP [dm6]	C	A	1.015e^-6	0.584	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19972748	2R_19972748_SNP [dm3] 2R_24085225_SNP [dm6]	G	A	1.246e^-6	0.584	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	1.584e^-6	0.594	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19030560	3R_19030560_SNP [dm3] 3R_23204838_SNP [dm6]	T	G	2.291e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	19030580	3R_19030580_INS [dm3] 3R_23204858_INS [dm6]	A	AT	2.498e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	19030611	3R_19030611_SNP [dm3] 3R_23204889_SNP [dm6]	T	C	3.733e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	19982493	2R_19982493_SNP [dm3] 2R_24094970_SNP [dm6]	T	C	4.164e^-6	0.601	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3987713	3L_3987713_SNP [dm3] 3L_3987713_SNP [dm6]	C	T	4.370e^-6	0.601	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21030752	3R_21030752_SNP [dm3] 3R_25205030_SNP [dm6]	A	T	5.307e^-6	0.601	INTRON CG13654 & 1 other
2L	20343221	2L_20343221_SNP [dm3] 2L_20343221_SNP [dm6]	A	T	5.354e^-6	0.601	INTRON spir
3R	19030584	3R_19030584_SNP [dm3] 3R_23204862_SNP [dm6]	C	T	5.512e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	19996423	2R_19996423_SNP [dm3] 2R_24108900_SNP [dm6]	G	T	5.846e^-6	0.601	SYNONYMOUS_CODING CG4049
2R	19975004	2R_19975004_SNP [dm3] 2R_24087481_SNP [dm6]	G	C	5.899e^-6	0.601	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6452220	X_6452220_SNP [dm3] X_6558187_SNP [dm6]	T	C	6.025e^-6	0.601	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	7392805	2R_7392805_SNP [dm3] 2R_11505300_SNP [dm6]	T	A	6.968e^-6	0.601	INTRON inv
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	7.062e^-6	0.601	INTRON CG17150
3L	15171675	3L_15171675_SNP [dm3] 3L_15178575_SNP [dm6]	G	A	7.219e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4871845	3L_4871845_SNP [dm3] 3L_4871845_SNP [dm6]	G	A	7.322e^-6	0.601	INTRON CG17150	TF binding site mE1_TFBS_HSA
X	18245824	X_18245824_INS [dm3] X_18351791_INS [dm6]	C	AGA	7.470e^-6	0.601	INTRON CG6123
3L	4871873	3L_4871873_DEL [dm3] 3L_4871873_DEL [dm6]	TC	T	7.673e^-6	0.601	INTRON CG17150	TF binding site mE1_TFBS_HSA
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	8.956e^-6	0.601	DOWNSTREAM CG9928 INTERGENIC
3R	4723832	3R_4723832_DEL [dm3] 3R_8898110_DEL [dm6]	TCTGCAAATCACAAT...	T	9.794e^-6	0.601	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	19030577	3R_19030577_SNP [dm3] 3R_23204855_SNP [dm6]	A	C	9.799e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	18972435	2R_18972435_SNP [dm3] 2R_23084912_SNP [dm6]	T	A	1.092e^-5	0.601	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19974129	2R_19974129_SNP [dm3] 2R_24086606_SNP [dm6]	G	T	1.108e^-5	0.601	UTR_5_PRIME snama DOWNSTREAM CG16786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974764	2R_19974764_SNP [dm3] 2R_24087241_SNP [dm6]	T	C	1.108e^-5	0.601	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17032067	3L_17032067_SNP [dm3] 3L_17038967_SNP [dm6]	T	C	1.117e^-5	0.601	INTRON scaf6	TF binding site mE1_TFBS_cad
3R	10371209	3R_10371209_SNP [dm3] 3R_14545487_SNP [dm6]	T	A	1.121e^-5	0.601	INTRON Pde6
3L	4871912	3L_4871912_SNP [dm3] 3L_4871912_SNP [dm6]	A	G	1.160e^-5	0.601	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	11515362	3R_11515362_SNP [dm3] 3R_15689640_SNP [dm6]	C	T	1.160e^-5	0.601	UTR_3_PRIME pxb
X	18245828	X_18245828_SNP [dm3] X_18351795_SNP [dm6]	T	C	1.178e^-5	0.601	INTRON CG6123
3R	21030790	3R_21030790_SNP [dm3] 3R_25205068_SNP [dm6]	G	A	1.286e^-5	0.601	INTRON CG13654 & 1 other
2R	19984116	2R_19984116_SNP [dm3] 2R_24096593_SNP [dm6]	G	T	1.295e^-5	0.601	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6307933	3L_6307933_SNP [dm3] 3L_6314833_SNP [dm6]	T	A	1.300e^-5	0.601	INTERGENIC
2L	20437146	2L_20437146_SNP [dm3] 2L_20437146_SNP [dm6]	G	A	1.398e^-5	0.601	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14338370	3R_14338370_SNP [dm3] 3R_18512648_SNP [dm6]	G	C	1.408e^-5	0.601	INTRON fru
3R	19030436	3R_19030436_SNP [dm3] 3R_23204714_SNP [dm6]	T	C	1.451e^-5	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
X	9858685	X_9858685_SNP [dm3] X_9964652_SNP [dm6]	C	T	1.626e^-5	0.601	SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
2R	18670641	2R_18670641_DEL [dm3] 2R_22783136_DEL [dm6]	AAG	A	1.689e^-5	0.601	INTRON CG42260
2L	4956395	2L_4956395_SNP [dm3] 2L_4956395_SNP [dm6]	A	G	1.707e^-5	0.601	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4880296	3L_4880296_SNP [dm3] 3L_4880296_SNP [dm6]	T	C	1.741e^-5	0.601	INTRON CG17150
3R	10156929	3R_10156929_SNP [dm3] 3R_14331207_SNP [dm6]	C	T	1.834e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156930	3R_10156930_SNP [dm3] 3R_14331208_SNP [dm6]	C	A	1.834e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13169991	3R_13169991_SNP [dm3] 3R_17344269_SNP [dm6]	G	A	1.870e^-5	0.601	INTRON beat-IIa
3L	11839461	3L_11839461_SNP [dm3] 3L_11846361_SNP [dm6]	C	G	1.880e^-5	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	10156944	3R_10156944_SNP [dm3] 3R_14331222_SNP [dm6]	G	C	1.990e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10454556	3L_10454556_SNP [dm3] 3L_10461456_SNP [dm6]	T	A	2.146e^-5	0.601	NON_SYNONYMOUS_CODING Gem3
2L	20268713	2L_20268713_SNP [dm3] 2L_20268713_SNP [dm6]	T	C	2.148e^-5	0.601	INTERGENIC
2L	20132606	2L_20132606_SNP [dm3] 2L_20132606_SNP [dm6]	C	A	2.152e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11487768	3R_11487768_SNP [dm3] 3R_15662046_SNP [dm6]	T	G	2.179e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	10156910	3R_10156910_INS [dm3] 3R_14331188_INS [dm6]	T	TGTAT	2.180e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4956360	2L_4956360_SNP [dm3] 2L_4956360_SNP [dm6]	C	T	2.190e^-5	0.601	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4956397	2L_4956397_DEL [dm3] 2L_4956397_DEL [dm6]	CAT	C	2.194e^-5	0.601	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15858356	2R_15858356_SNP [dm3] 2R_19970851_SNP [dm6]	C	A	2.203e^-5	0.601	INTERGENIC
2L	15386524	2L_15386524_SNP [dm3] 2L_15386524_SNP [dm6]	C	G	2.248e^-5	0.601	INTERGENIC
3R	10156937	3R_10156937_SNP [dm3] 3R_14331215_SNP [dm6]	G	A	2.257e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10697615	3R_10697615_SNP [dm3] 3R_14871893_SNP [dm6]	A	T	2.350e^-5	0.601	INTRON btsz
2R	19976766	2R_19976766_SNP [dm3] 2R_24089243_SNP [dm6]	A	G	2.353e^-5	0.601	NON_SYNONYMOUS_CODING snama
3L	7629777	3L_7629777_SNP [dm3] 3L_7636677_SNP [dm6]	C	G	2.402e^-5	0.601	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	2.447e^-5	0.601	SYNONYMOUS_CODING CG16798
3L	7629324	3L_7629324_SNP [dm3] 3L_7636224_SNP [dm6]	G	C	2.503e^-5	0.601	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20350998	2L_20350998_SNP [dm3] 2L_20350998_SNP [dm6]	C	A	2.536e^-5	0.601	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
2R	12633600	2R_12633600_SNP [dm3] 2R_16746095_SNP [dm6]	G	T	2.562e^-5	0.601	UPSTREAM Sfp53D INTRON CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10156932	3R_10156932_INS [dm3] 3R_14331210_INS [dm6]	G	GTAT	2.580e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20138957	2R_20138957_SNP [dm3] 2R_24251434_SNP [dm6]	A	C	2.605e^-5	0.601	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3L	10739474	3L_10739474_SNP [dm3] 3L_10746374_SNP [dm6]	A	T	2.605e^-5	0.601	INTERGENIC
3R	8099075	3R_8099075_SNP [dm3] 3R_12273353_SNP [dm6]	T	A	2.654e^-5	0.601	SYNONYMOUS_CODING Sfp87B INTRON svp
3R	10156939	3R_10156939_INS [dm3] 3R_14331217_INS [dm6]	A	ATGTACATATATCATTTTTT...	2.660e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156950	3R_10156950_SNP [dm3] 3R_14331228_SNP [dm6]	G	C	2.660e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156952	3R_10156952_INS [dm3] 3R_14331230_INS [dm6]	G	GATTAAAT	2.660e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4006930	2R_4006930_SNP [dm3] 2R_8119425_SNP [dm6]	T	C	2.688e^-5	0.601	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
3R	12396346	3R_12396346_SNP [dm3] 3R_16570624_SNP [dm6]	C	A	2.711e^-5	0.601	UTR_3_PRIME CG42342 UPSTREAM CG14891 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	22307250	2L_22307250_SNP [dm3] 2L_22307250_SNP [dm6]	T	G	2.712e^-5	0.601	INTERGENIC
2R	17927618	2R_17927618_DEL [dm3] 2R_22040113_DEL [dm6]	GACAGC	G	2.718e^-5	0.601	UPSTREAM CG34370 INTERGENIC
2R	7392807	2R_7392807_INS [dm3] 2R_11505302_INS [dm6]	T	TT	2.726e^-5	0.601	INTRON inv
3L	7630115	3L_7630115_SNP [dm3] 3L_7637015_SNP [dm6]	A	T	2.742e^-5	0.601	SYNONYMOUS_CODING CG33275
3R	18945930	3R_18945930_SNP [dm3] 3R_23120208_SNP [dm6]	C	T	2.742e^-5	0.601	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13263711	2L_13263711_SNP [dm3] 2L_13263711_SNP [dm6]	C	T	2.756e^-5	0.601	INTRON CG44085
3R	10156948	3R_10156948_SNP [dm3] 3R_14331226_SNP [dm6]	C	T	2.770e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20139544	2R_20139544_SNP [dm3] 2R_24252021_SNP [dm6]	A	C	2.815e^-5	0.601	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	11529801	3R_11529801_SNP [dm3] 3R_15704079_SNP [dm6]	T	C	2.830e^-5	0.601	UPSTREAM CG5404 INTERGENIC
3L	11897267	3L_11897267_SNP [dm3] 3L_11904167_SNP [dm6]	G	T	2.846e^-5	0.601	INTRON CG44837
3R	11508626	3R_11508626_SNP [dm3] 3R_15682904_SNP [dm6]	C	T	2.853e^-5	0.601	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	620938	3R_620938_DEL [dm3] 3R_4795216_DEL [dm6]	TT	T	2.878e^-5	0.601	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4723105	3R_4723105_SNP [dm3] 3R_8897383_SNP [dm6]	T	A	2.878e^-5	0.601	INTRON pyd
3R	26042222	3R_26042222_SNP [dm3] 3R_30216500_SNP [dm6]	T	C	2.898e^-5	0.601	UTR_5_PRIME CecC
2R	18670862	2R_18670862_SNP [dm3] 2R_22783357_SNP [dm6]	C	A	2.944e^-5	0.601	UPSTREAM CG30270 INTRON CG42260
2R	19984341	2R_19984341_SNP [dm3] 2R_24096818_SNP [dm6]	C	T	2.952e^-5	0.601	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3643803	X_3643803_SNP [dm3] X_3749770_SNP [dm6]	T	C	2.969e^-5	0.601	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13142029	2L_13142029_SNP [dm3] 2L_13142029_SNP [dm6]	T	C	2.978e^-5	0.601	DOWNSTREAM CG9928 INTERGENIC
3R	620935	3R_620935_SNP [dm3] 3R_4795213_SNP [dm6]	A	C	3.102e^-5	0.601	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20699174	3R_20699174_SNP [dm3] 3R_24873452_SNP [dm6]	T	C	3.116e^-5	0.601	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2R	12460216	2R_12460216_INS [dm3] 2R_16572711_INS [dm6]	A	AA	3.150e^-5	0.601	INTRON CG4927
2L	20403587	2L_20403587_SNP [dm3] 2L_20403587_SNP [dm6]	G	T	3.172e^-5	0.601	INTRON CG10947
2R	18972454	2R_18972454_SNP [dm3] 2R_23084931_SNP [dm6]	G	A	3.200e^-5	0.601	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	620936	3R_620936_SNP [dm3] 3R_4795214_SNP [dm6]	G	A	3.244e^-5	0.601	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19023588	3R_19023588_INS [dm3] 3R_23197866_INS [dm6]	T	TCTACGGTTCTACGG...	3.303e^-5	0.601	INTRON cnc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25531759	3R_25531759_SNP [dm3] 3R_29706037_SNP [dm6]	T	A	3.323e^-5	0.601	INTERGENIC

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Missing results

By genomic position
Variant impact
Gene name

mn_StarvationRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results