DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.794e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2637 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2711053	3L_2711053_SNP [dm3] 3L_2711053_SNP [dm6]	T	G	6.294e^-8	0.101	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19030449	3R_19030449_INS [dm3] 3R_23204727_INS [dm6]	G	GTT	1.078e^-7	0.101	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	4.211e^-7	0.263	SYNONYMOUS_CODING CG16798
3L	1893928	3L_1893928_SNP [dm3] 3L_1893928_SNP [dm6]	T	C	7.483e^-7	0.33	SYNONYMOUS_CODING CG1887
X	16934242	X_16934242_SNP [dm3] X_17040209_SNP [dm6]	A	C	9.500e^-7	0.33	INTRON CG45002
2L	20141865	2L_20141865_INS [dm3] 2L_20141865_INS [dm6]	A	ACTTTCTAAGCCAGAAA...	1.054e^-6	0.33	INTERGENIC
2L	20145355	2L_20145355_SNP [dm3] 2L_20145355_SNP [dm6]	A	T	1.670e^-6	0.442	INTERGENIC
2R	8587286	2R_8587286_SNP [dm3] 2R_12699781_SNP [dm6]	C	T	1.886e^-6	0.442	UPSTREAM wuc INTERGENIC
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	2.390e^-6	0.461	DOWNSTREAM CG9928 INTERGENIC
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	2.458e^-6	0.461	INTRON CG17150
3L	19220699	3L_19220699_SNP [dm3] 3L_19227599_SNP [dm6]	C	T	3.255e^-6	0.51	INTRON fz2
4	527078	4_527078_SNP [dm3] 4_506452_SNP [dm6]	C	A	4.814e^-6	0.51	INTRON zfh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20137590	2L_20137590_SNP [dm3] 2L_20137590_SNP [dm6]	T	C	4.931e^-6	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9634476	2R_9634476_SNP [dm3] 2R_13746971_SNP [dm6]	A	T	5.301e^-6	0.51	UTR_3_PRIME fas
X	7918956	X_7918956_INS [dm3] X_8024923_INS [dm6]	C	CC	5.355e^-6	0.51	INTRON Tbh
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	6.121e^-6	0.51	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10381181	2L_10381181_SNP [dm3] 2L_10381181_SNP [dm6]	C	T	6.262e^-6	0.51	SYNONYMOUS_CODING gny
3L	18395930	3L_18395930_SNP [dm3] 3L_18402830_SNP [dm6]	T	C	6.349e^-6	0.51	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20141508	2L_20141508_SNP [dm3] 2L_20141508_SNP [dm6]	C	A	6.582e^-6	0.51	INTERGENIC
2L	20350998	2L_20350998_SNP [dm3] 2L_20350998_SNP [dm6]	C	A	6.683e^-6	0.51	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	6.849e^-6	0.51	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2L	20289085	2L_20289085_SNP [dm3] 2L_20289085_SNP [dm6]	G	A	7.048e^-6	0.51	INTERGENIC
2R	15824896	2R_15824896_SNP [dm3] 2R_19937391_SNP [dm6]	C	T	7.397e^-6	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	975816	2L_975816_SNP [dm3] 2L_975816_SNP [dm6]	T	C	7.522e^-6	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	14266213	X_14266213_DEL [dm3] X_14372180_DEL [dm6]	TT	T	7.592e^-6	0.51	INTRON dpr8
2R	8587287	2R_8587287_SNP [dm3] 2R_12699782_SNP [dm6]	A	T	7.703e^-6	0.51	UPSTREAM wuc INTERGENIC
2R	9634475	2R_9634475_SNP [dm3] 2R_13746970_SNP [dm6]	T	A	8.487e^-6	0.51	UTR_3_PRIME fas
X	8625700	X_8625700_SNP [dm3] X_8731667_SNP [dm6]	C	A	8.540e^-6	0.51	INTERGENIC
3L	2564275	3L_2564275_SNP [dm3] 3L_2564275_SNP [dm6]	T	C	8.812e^-6	0.51	INTRON msn
2L	20268713	2L_20268713_SNP [dm3] 2L_20268713_SNP [dm6]	T	C	9.332e^-6	0.51	INTERGENIC
3L	7144216	3L_7144216_SNP [dm3] 3L_7151116_SNP [dm6]	G	T	9.357e^-6	0.51	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19982478	2R_19982478_SNP [dm3] 2R_24094955_SNP [dm6]	C	A	9.390e^-6	0.51	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9632540	2R_9632540_SNP [dm3] 2R_13745035_SNP [dm6]	A	G	9.594e^-6	0.51	INTRON fas	TF binding site mE1_TFBS_chinmo
X	10943443	X_10943443_SNP [dm3] X_11049410_SNP [dm6]	C	A	9.745e^-6	0.51	UTR_3_PRIME CG11160
2L	20376524	2L_20376524_SNP [dm3] 2L_20376524_SNP [dm6]	C	T	1.007e^-5	0.51	DOWNSTREAM CG16798 INTERGENIC
3R	22295861	3R_22295861_SNP [dm3] 3R_26470139_SNP [dm6]	T	A	1.074e^-5	0.51	UTR_3_PRIME plum DOWNSTREAM CG5455 & 1 other
3L	9351341	3L_9351341_SNP [dm3] 3L_9358241_SNP [dm6]	C	A	1.097e^-5	0.51	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19581203	3R_19581203_SNP [dm3] 3R_23755481_SNP [dm6]	G	A	1.107e^-5	0.51	SPLICE_SITE_REGION Hrd3 DOWNSTREAM Rpt5 INTRON Hrd3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19581368	3R_19581368_SNP [dm3] 3R_23755646_SNP [dm6]	T	C	1.113e^-5	0.51	SYNONYMOUS_CODING Hrd3
3R	24818634	3R_24818634_SNP [dm3] 3R_28992912_SNP [dm6]	C	T	1.116e^-5	0.51	DOWNSTREAM wat INTERGENIC
2R	15824738	2R_15824738_SNP [dm3] 2R_19937233_SNP [dm6]	A	G	1.157e^-5	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13072510	2R_13072510_SNP [dm3] 2R_17185005_SNP [dm6]	C	T	1.159e^-5	0.51	UPSTREAM CR44387 INTERGENIC
2L	1833042	2L_1833042_SNP [dm3] 2L_1833042_SNP [dm6]	T	C	1.179e^-5	0.51	UPSTREAM c-cup INTERGENIC
2L	10381226	2L_10381226_SNP [dm3] 2L_10381226_SNP [dm6]	G	C	1.212e^-5	0.51	NON_SYNONYMOUS_CODING gny
3L	1392230	3L_1392230_SNP [dm3] 3L_1392230_SNP [dm6]	A	T	1.225e^-5	0.51	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5332184	X_5332184_SNP [dm3] X_5438151_SNP [dm6]	A	C	1.260e^-5	0.514	INTERGENIC
X	14266210	X_14266210_SNP [dm3] X_14372177_SNP [dm6]	T	C	1.287e^-5	0.514	INTRON dpr8
2L	20262953	2L_20262953_SNP [dm3] 2L_20262953_SNP [dm6]	T	A	1.401e^-5	0.524	DOWNSTREAM CG17570 INTERGENIC
3L	15842494	3L_15842494_SNP [dm3] 3L_15849394_SNP [dm6]	A	G	1.431e^-5	0.524	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	4815100	2R_4815100_SNP [dm3] 2R_8927595_SNP [dm6]	G	A	1.518e^-5	0.524	NON_SYNONYMOUS_CODING CG8235 UPSTREAM PAN2 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5360340	3L_5360340_SNP [dm3] 3L_5367240_SNP [dm6]	G	A	1.523e^-5	0.524	SYNONYMOUS_CODING Membrin DOWNSTREAM CG10635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	11232526	X_11232526_SNP [dm3] X_11338493_SNP [dm6]	C	T	1.530e^-5	0.524	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2L	20141079	2L_20141079_SNP [dm3] 2L_20141079_SNP [dm6]	T	A	1.540e^-5	0.524	INTERGENIC
3L	8144047	3L_8144047_SNP [dm3] 3L_8150947_SNP [dm6]	G	T	1.562e^-5	0.524	INTRON CG13676
2R	1329678	2R_1329678_SNP [dm3] 2R_5442173_SNP [dm6]	A	G	1.586e^-5	0.524	INTRON laccase2
2R	9629187	2R_9629187_SNP [dm3] 2R_13741682_SNP [dm6]	G	A	1.593e^-5	0.524	INTRON fas
2L	20135767	2L_20135767_SNP [dm3] 2L_20135767_SNP [dm6]	C	G	1.614e^-5	0.524	UPSTREAM CG10651 INTERGENIC
3L	5186720	3L_5186720_SNP [dm3] 3L_5193620_SNP [dm6]	A	G	1.659e^-5	0.524	INTRON shep
2L	20132606	2L_20132606_SNP [dm3] 2L_20132606_SNP [dm6]	C	A	1.660e^-5	0.524	INTERGENIC	TF binding site mE1_TFBS_inv
4	527079	4_527079_SNP [dm3] 4_506453_SNP [dm6]	C	A	1.676e^-5	0.524	INTRON zfh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	1.706e^-5	0.525	UTR_3_PRIME laccase2
3R	10157048	3R_10157048_SNP [dm3] 3R_14331326_SNP [dm6]	A	T	1.775e^-5	0.533	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10407335	2R_10407335_SNP [dm3] 2R_14519830_SNP [dm6]	T	C	1.797e^-5	0.533	INTERGENIC
3R	19030436	3R_19030436_SNP [dm3] 3R_23204714_SNP [dm6]	T	C	1.930e^-5	0.533	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2L	20243884	2L_20243884_SNP [dm3] 2L_20243884_SNP [dm6]	C	G	1.951e^-5	0.533	INTERGENIC
2L	20213753	2L_20213753_SNP [dm3] 2L_20213753_SNP [dm6]	A	G	1.957e^-5	0.533	INTERGENIC	transposable element FlyBase
3L	13882409	3L_13882409_SNP [dm3] 3L_13889309_SNP [dm6]	T	C	1.963e^-5	0.533	INTRON dysc
3L	18423295	3L_18423295_SNP [dm3] 3L_18430195_SNP [dm6]	T	A	1.977e^-5	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12145223	3R_12145223_SNP [dm3] 3R_16319501_SNP [dm6]	C	T	1.980e^-5	0.533	INTRON Sulf1
2R	4772596	2R_4772596_DEL [dm3] 2R_8885091_DEL [dm6]	TGGCCAAT	T	1.988e^-5	0.533	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6263524	X_6263524_SNP [dm3] X_6369491_SNP [dm6]	C	A	2.026e^-5	0.533	INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9625837	2R_9625837_SNP [dm3] 2R_13738332_SNP [dm6]	G	A	2.046e^-5	0.533	INTRON fas
3R	17333789	3R_17333789_SNP [dm3] 3R_21508067_SNP [dm6]	T	A	2.109e^-5	0.539	INTRON C15
3L	2711113	3L_2711113_SNP [dm3] 3L_2711113_SNP [dm6]	G	C	2.154e^-5	0.539	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19996423	2R_19996423_SNP [dm3] 2R_24108900_SNP [dm6]	G	T	2.154e^-5	0.539	SYNONYMOUS_CODING CG4049
2L	20481728	2L_20481728_DEL [dm3] 2L_20481728_DEL [dm6]	AA	A	2.251e^-5	0.556	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19976766	2R_19976766_SNP [dm3] 2R_24089243_SNP [dm6]	A	G	2.282e^-5	0.556	NON_SYNONYMOUS_CODING snama
2R	10470803	2R_10470803_INS [dm3] 2R_14583298_INS [dm6]	C	CC	2.339e^-5	0.562	SPLICE_SITE_REGION ttv INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15464535	3R_15464535_SNP [dm3] 3R_19638813_SNP [dm6]	T	G	2.464e^-5	0.581	INTRON subdued
X	14266222	X_14266222_SNP [dm3] X_14372189_SNP [dm6]	A	T	2.566e^-5	0.581	INTRON dpr8
X	18468759	X_18468759_DEL [dm3] X_18574726_DEL [dm6]	AAATAATAGAATAGAATAAA...	A	2.597e^-5	0.581	INTERGENIC
2L	8197316	2L_8197316_SNP [dm3] 2L_8197316_SNP [dm6]	G	A	2.617e^-5	0.581	SYNONYMOUS_CODING CG8460 UPSTREAM CG8475 DOWNSTREAM CR44116	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20379286	2L_20379286_SNP [dm3] 2L_20379286_SNP [dm6]	G	T	2.627e^-5	0.581	NON_SYNONYMOUS_CODING CG16798
2L	20483608	2L_20483608_SNP [dm3] 2L_20483608_SNP [dm6]	G	C	2.679e^-5	0.581	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2L	20141313	2L_20141313_SNP [dm3] 2L_20141313_SNP [dm6]	A	T	2.714e^-5	0.581	INTERGENIC
2L	11269671	2L_11269671_SNP [dm3] 2L_11269671_SNP [dm6]	G	C	2.768e^-5	0.581	UPSTREAM cana & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12846277	3L_12846277_SNP [dm3] 3L_12853177_SNP [dm6]	T	C	2.783e^-5	0.581	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3L	5372027	3L_5372027_DEL [dm3] 3L_5378927_DEL [dm6]	GG	G	2.819e^-5	0.581	DOWNSTREAM CR45743 INTRON Ir64a
2L	19690361	2L_19690361_SNP [dm3] 2L_19690361_SNP [dm6]	A	C	2.836e^-5	0.581	INTRON Lar
2L	20252350	2L_20252350_SNP [dm3] 2L_20252350_SNP [dm6]	G	T	2.842e^-5	0.581	INTERGENIC
2L	10381472	2L_10381472_SNP [dm3] 2L_10381472_SNP [dm6]	A	G	2.849e^-5	0.581	SYNONYMOUS_CODING gny UPSTREAM CG5096
2L	20134127	2L_20134127_SNP [dm3] 2L_20134127_SNP [dm6]	C	T	2.850e^-5	0.581	NON_SYNONYMOUS_CODING CG10651
3L	3633899	3L_3633899_DEL [dm3] 3L_3633899_DEL [dm6]	TCTTGGA	T	3.065e^-5	0.586	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2718736	3L_2718736_SNP [dm3] 3L_2718736_SNP [dm6]	T	A	3.071e^-5	0.586	UTR_3_PRIME Mrtf DOWNSTREAM Mrtf
2L	20322443	2L_20322443_SNP [dm3] 2L_20322443_SNP [dm6]	T	A	3.182e^-5	0.586	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19907144	3R_19907144_SNP [dm3] 3R_24081422_SNP [dm6]	G	A	3.208e^-5	0.586	INTRON 4EHP
3L	6760804	3L_6760804_SNP [dm3] 3L_6767704_SNP [dm6]	G	A	3.237e^-5	0.586	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	21211650	3R_21211650_SNP [dm3] 3R_25385928_SNP [dm6]	T	A	3.274e^-5	0.586	INTRON Fur1
3R	17789945	3R_17789945_SNP [dm3] 3R_21964223_SNP [dm6]	G	A	3.320e^-5	0.586	INTRON Eip93F
X	11232407	X_11232407_SNP [dm3] X_11338374_SNP [dm6]	C	T	3.372e^-5	0.586	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	4831634	2R_4831634_SNP [dm3] 2R_8944129_SNP [dm6]	T	C	3.399e^-5	0.586	DOWNSTREAM CG8230 EXON CR44274
2R	4831635	2R_4831635_SNP [dm3] 2R_8944130_SNP [dm6]	C	T	3.399e^-5	0.586	DOWNSTREAM CG8230 EXON CR44274
2R	4821273	2R_4821273_SNP [dm3] 2R_8933768_SNP [dm6]	G	C	3.464e^-5	0.586	DOWNSTREAM PAN2 & 1 other INTRON CG13749
2L	5643136	2L_5643136_SNP [dm3] 2L_5643136_SNP [dm6]	T	C	3.535e^-5	0.586	DOWNSTREAM mir-964 INTRON CG31646
2L	10196817	2L_10196817_SNP [dm3] 2L_10196817_SNP [dm6]	G	A	3.550e^-5	0.586	NON_SYNONYMOUS_CODING Sur
3R	22372746	3R_22372746_SNP [dm3] 3R_26547024_SNP [dm6]	T	C	3.560e^-5	0.586	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10157800	3R_10157800_SNP [dm3] 3R_14332078_SNP [dm6]	C	G	3.562e^-5	0.586	INTRON NK7.1
2L	20351369	2L_20351369_SNP [dm3] 2L_20351369_SNP [dm6]	G	A	3.598e^-5	0.586	INTRON RtGEF
2L	20374844	2L_20374844_SNP [dm3] 2L_20374844_SNP [dm6]	G	A	3.617e^-5	0.586	UPSTREAM Ugt37a1 INTERGENIC
2R	3776369	2R_3776369_SNP [dm3] 2R_7888864_SNP [dm6]	A	T	3.651e^-5	0.586	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20481731	2L_20481731_SNP [dm3] 2L_20481731_SNP [dm6]	C	A	3.655e^-5	0.586	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
4	1106389	4_1106389_SNP [dm3] 4_1085763_SNP [dm6]	C	A	3.688e^-5	0.586	UPSTREAM Actbeta INTERGENIC	regulatory region REDfly_CRMs
3R	10697615	3R_10697615_SNP [dm3] 3R_14871893_SNP [dm6]	A	T	3.694e^-5	0.586	INTRON btsz
2L	20259695	2L_20259695_SNP [dm3] 2L_20259695_SNP [dm6]	G	T	3.695e^-5	0.586	INTERGENIC
2L	20126742	2L_20126742_INS [dm3] 2L_20126742_INS [dm6]	A	AA	3.757e^-5	0.586	INTERGENIC
3R	24886313	3R_24886313_SNP [dm3] 3R_29060591_SNP [dm6]	C	T	3.780e^-5	0.586	INTRON Cul5
X	18468653	X_18468653_SNP [dm3] X_18574620_SNP [dm6]	A	C	3.821e^-5	0.586	INTERGENIC
4	1010795	4_1010795_SNP [dm3] 4_990169_SNP [dm6]	T	C	3.877e^-5	0.586	UTR_5_PRIME toy	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24452910	3R_24452910_SNP [dm3] 3R_28627188_SNP [dm6]	C	T	3.896e^-5	0.586	INTRON CG10011
2R	9625876	2R_9625876_SNP [dm3] 2R_13738371_SNP [dm6]	C	A	3.934e^-5	0.586	INTRON fas
2R	9755630	2R_9755630_SNP [dm3] 2R_13868125_SNP [dm6]	C	T	3.934e^-5	0.586	INTRON shot
2L	3940349	2L_3940349_SNP [dm3] 2L_3940349_SNP [dm6]	C	T	3.945e^-5	0.586	INTRON fred
2R	4006830	2R_4006830_SNP [dm3] 2R_8119325_SNP [dm6]	G	A	3.964e^-5	0.586	SPLICE_SITE_REGION Asap SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
2R	10407370	2R_10407370_SNP [dm3] 2R_14519865_SNP [dm6]	A	T	3.971e^-5	0.586	INTERGENIC
4	637343	4_637343_SNP [dm3] 4_616717_SNP [dm6]	T	A	4.017e^-5	0.586	INTRON Eph	transposable element FlyBase
X	11232414	X_11232414_SNP [dm3] X_11338381_SNP [dm6]	G	T	4.034e^-5	0.586	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
4	995850	4_995850_SNP [dm3] 4_975224_SNP [dm6]	A	T	4.037e^-5	0.586	UTR_5_PRIME fuss INTRON fuss EXON sphinx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5360957	3L_5360957_SNP [dm3] 3L_5367857_SNP [dm6]	T	C	4.039e^-5	0.586	DOWNSTREAM Membrin INTRON CG10635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4538195	3L_4538195_SNP [dm3] 3L_4538195_SNP [dm6]	T	C	4.055e^-5	0.586	INTRON CG11353	TF binding site BDTNP1_TFBS_twi
3L	6656004	3L_6656004_SNP [dm3] 3L_6662904_SNP [dm6]	C	G	4.058e^-5	0.586	INTERGENIC
X	6263522	X_6263522_INS [dm3] X_6369489_INS [dm6]	T	TT	4.112e^-5	0.589	INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24818445	3R_24818445_SNP [dm3] 3R_28992723_SNP [dm6]	T	A	4.188e^-5	0.589	DOWNSTREAM wat INTERGENIC
3L	6395497	3L_6395497_SNP [dm3] 3L_6402397_SNP [dm6]	T	C	4.216e^-5	0.589	INTRON CG42747
2R	19390179	2R_19390179_SNP [dm3] 2R_23502656_SNP [dm6]	G	A	4.219e^-5	0.589	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14564735	3L_14564735_SNP [dm3] 3L_14571635_SNP [dm6]	A	C	4.253e^-5	0.589	INTERGENIC
2R	5122789	2R_5122789_SNP [dm3] 2R_9235284_SNP [dm6]	T	A	4.268e^-5	0.589	NON_SYNONYMOUS_CODING hig	TF binding site mE1_TFBS_chinmo
2R	5020785	2R_5020785_SNP [dm3] 2R_9133280_SNP [dm6]	C	T	4.372e^-5	0.594	NON_SYNONYMOUS_CODING Hydr1 UPSTREAM Hydr1 INTRON Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
X	8080551	X_8080551_DEL [dm3] X_8186518_DEL [dm6]	AGTTTA	A	4.391e^-5	0.594	INTRON sdt
3R	19504979	3R_19504979_SNP [dm3] 3R_23679257_SNP [dm6]	G	T	4.404e^-5	0.594	NON_SYNONYMOUS_CODING CG10157 SPLICE_SITE_REGION CG10157 UPSTREAM eIF-3p66 DOWNSTREAM CG13822	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20390016	2L_20390016_SNP [dm3] 2L_20390016_SNP [dm6]	C	A	4.441e^-5	0.595	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11271442	2L_11271442_SNP [dm3] 2L_11271442_SNP [dm6]	A	T	4.481e^-5	0.596	NON_SYNONYMOUS_CODING cana UPSTREAM cana	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	11508626	3R_11508626_SNP [dm3] 3R_15682904_SNP [dm6]	C	T	4.539e^-5	0.596	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12390965	2L_12390965_SNP [dm3] 2L_12390965_SNP [dm6]	G	A	4.601e^-5	0.596	INTRON bru-2
2R	10626384	2R_10626384_SNP [dm3] 2R_14738879_SNP [dm6]	T	G	4.611e^-5	0.596	DOWNSTREAM CG12858 EXON CR43428	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17275578	3L_17275578_SNP [dm3] 3L_17282478_SNP [dm6]	T	C	4.619e^-5	0.596	INTERGENIC
2L	19878202	2L_19878202_SNP [dm3] 2L_19878202_SNP [dm6]	G	A	4.640e^-5	0.596	INTRON sick
2R	9755850	2R_9755850_SNP [dm3] 2R_13868345_SNP [dm6]	T	C	4.757e^-5	0.602	SYNONYMOUS_CODING shot INTRON shot
X	11232662	X_11232662_SNP [dm3] X_11338629_SNP [dm6]	G	C	4.784e^-5	0.602	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
3R	19054437	3R_19054437_SNP [dm3] 3R_23228715_SNP [dm6]	C	T	4.799e^-5	0.602	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10468490	3L_10468490_SNP [dm3] 3L_10475390_SNP [dm6]	C	A	4.880e^-5	0.602	INTERGENIC
2R	1344272	2R_1344272_SNP [dm3] 2R_5456767_SNP [dm6]	A	G	4.910e^-5	0.602	DOWNSTREAM laccase2 INTERGENIC	transposable element FlyBase
3L	7850106	3L_7850106_SNP [dm3] 3L_7857006_SNP [dm6]	A	G	4.949e^-5	0.602	INTRON Pdp1	TF binding site BDTNP1_TFBS_dl
X	9083425	X_9083425_SNP [dm3] X_9189392_SNP [dm6]	G	T	4.950e^-5	0.602	NON_SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
2L	20421603	2L_20421603_SNP [dm3] 2L_20421603_SNP [dm6]	G	T	4.974e^-5	0.602	UPSTREAM snoRNA:Psi18S-525i & 2 others DOWNSTREAM snoRNA:Psi18S-640e & 2 others INTRON Arpc2
3R	19054441	3R_19054441_SNP [dm3] 3R_23228719_SNP [dm6]	G	C	4.990e^-5	0.602	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17791617	2L_17791617_SNP [dm3] 2L_17791617_SNP [dm6]	A	T	5.027e^-5	0.602	UPSTREAM CR43419 INTRON CadN2
2R	9755428	2R_9755428_SNP [dm3] 2R_13867923_SNP [dm6]	T	C	5.035e^-5	0.602	INTRON shot
2L	20141297	2L_20141297_SNP [dm3] 2L_20141297_SNP [dm6]	C	G	5.104e^-5	0.602	INTERGENIC
X	9240805	X_9240805_SNP [dm3] X_9346772_SNP [dm6]	C	G	5.120e^-5	0.602	INTRON CG34449
2R	19455204	2R_19455204_SNP [dm3] 2R_23567681_SNP [dm6]	C	A	5.150e^-5	0.602	UPSTREAM apt INTRON apt
2R	9630031	2R_9630031_SNP [dm3] 2R_13742526_SNP [dm6]	G	A	5.177e^-5	0.602	INTRON fas
X	5411898	X_5411898_SNP [dm3] X_5517865_SNP [dm6]	T	A	5.222e^-5	0.602	UPSTREAM CR45518 INTRON CG12730	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	13142363	2L_13142363_SNP [dm3] 2L_13142363_SNP [dm6]	G	A	5.234e^-5	0.602	DOWNSTREAM CG9928 & 1 other INTERGENIC
3L	3995377	3L_3995377_SNP [dm3] 3L_3995377_SNP [dm6]	T	G	5.314e^-5	0.603	INTERGENIC
3L	4873121	3L_4873121_SNP [dm3] 3L_4873121_SNP [dm6]	G	A	5.339e^-5	0.603	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27235971	3R_27235971_SNP [dm3] 3R_31410249_SNP [dm6]	A	T	5.365e^-5	0.603	INTRON Gprk2
2R	15539313	2R_15539313_SNP [dm3] 2R_19651808_SNP [dm6]	C	T	5.381e^-5	0.603	UPSTREAM Ir56e DOWNSTREAM CR44212 INTERGENIC
2R	4747355	2R_4747355_SNP [dm3] 2R_8859850_SNP [dm6]	T	A	5.400e^-5	0.603	UPSTREAM RyR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_sbb
3L	7629777	3L_7629777_SNP [dm3] 3L_7636677_SNP [dm6]	C	G	5.520e^-5	0.613	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21221268	3R_21221268_SNP [dm3] 3R_25395546_SNP [dm6]	C	G	5.574e^-5	0.615	INTRON Fur1
2R	16692395	2R_16692395_SNP [dm3] 2R_20804890_SNP [dm6]	G	A	5.640e^-5	0.616	INTERGENIC
3R	24886296	3R_24886296_SNP [dm3] 3R_29060574_SNP [dm6]	A	T	5.704e^-5	0.616	INTRON Cul5
4	854283	4_854283_SNP [dm3] 4_833657_SNP [dm6]	G	A	5.726e^-5	0.616	START_GAINED Sox102F UTR_5_PRIME Sox102F	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	17769455	3R_17769455_SNP [dm3] 3R_21943733_SNP [dm6]	A	C	5.743e^-5	0.616	INTERGENIC
3L	12846274	3L_12846274_SNP [dm3] 3L_12853174_SNP [dm6]	C	A	5.743e^-5	0.616	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3L	7415030	3L_7415030_SNP [dm3] 3L_7421930_SNP [dm6]	C	T	5.829e^-5	0.621	INTERGENIC
2R	9614049	2R_9614049_SNP [dm3] 2R_13726544_SNP [dm6]	A	G	5.952e^-5	0.629	INTRON fas
X	16937494	X_16937494_SNP [dm3] X_17043461_SNP [dm6]	A	G	5.970e^-5	0.629	INTRON CG45002
2R	9444901	2R_9444901_SNP [dm3] 2R_13557396_SNP [dm6]	T	G	6.046e^-5	0.633	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2344777	3L_2344777_SNP [dm3] 3L_2344777_SNP [dm6]	A	G	6.158e^-5	0.637	UTR_3_PRIME MsR1
3R	11382273	3R_11382273_SNP [dm3] 3R_15556551_SNP [dm6]	G	A	6.235e^-5	0.637	INTERGENIC
2L	20136012	2L_20136012_SNP [dm3] 2L_20136012_SNP [dm6]	C	G	6.252e^-5	0.637	INTERGENIC
2L	20264870	2L_20264870_SNP [dm3] 2L_20264870_SNP [dm6]	G	A	6.273e^-5	0.637	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9985443	3L_9985443_SNP [dm3] 3L_9992343_SNP [dm6]	G	T	6.326e^-5	0.637	INTRON dpr6
3R	24886285	3R_24886285_SNP [dm3] 3R_29060563_SNP [dm6]	T	A	6.441e^-5	0.637	INTRON Cul5
2L	12335006	2L_12335006_SNP [dm3] 2L_12335006_SNP [dm6]	C	A	6.491e^-5	0.637	INTERGENIC
2R	17169744	2R_17169744_SNP [dm3] 2R_21282239_SNP [dm6]	G	A	6.517e^-5	0.637	UPSTREAM MFS16 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	11271424	2L_11271424_SNP [dm3] 2L_11271424_SNP [dm6]	A	C	6.522e^-5	0.637	NON_SYNONYMOUS_CODING cana UPSTREAM cana	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	14056220	3L_14056220_SNP [dm3] 3L_14063120_SNP [dm6]	A	G	6.559e^-5	0.637	INTRON CG32138
2L	13142029	2L_13142029_SNP [dm3] 2L_13142029_SNP [dm6]	T	C	6.567e^-5	0.637	DOWNSTREAM CG9928 INTERGENIC
4	665826	4_665826_SNP [dm3] 4_645200_SNP [dm6]	G	T	6.598e^-5	0.637	INTRON CG9935	transposable element FlyBase
3L	2734022	3L_2734022_SNP [dm3] 3L_2734022_SNP [dm6]	T	C	6.630e^-5	0.637	INTRON Mrtf
2R	10407334	2R_10407334_SNP [dm3] 2R_14519829_SNP [dm6]	C	T	6.659e^-5	0.637	INTERGENIC
3L	6874385	3L_6874385_SNP [dm3] 3L_6881285_SNP [dm6]	T	C	6.679e^-5	0.637	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	9444864	2R_9444864_SNP [dm3] 2R_13557359_SNP [dm6]	A	T	6.718e^-5	0.637	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11082004	2L_11082004_SNP [dm3] 2L_11082004_SNP [dm6]	A	G	6.762e^-5	0.637	UPSTREAM AstC INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8299665	2R_8299665_SNP [dm3] 2R_12412160_SNP [dm6]	T	A	6.775e^-5	0.637	DOWNSTREAM CG33627 INTERGENIC
3R	19580316	3R_19580316_INS [dm3] 3R_23754594_INS [dm6]	A	AAA	6.782e^-5	0.637	UTR_3_PRIME Rpt5 DOWNSTREAM Hrd3
3L	1935439	3L_1935439_SNP [dm3] 3L_1935439_SNP [dm6]	G	A	6.853e^-5	0.637	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_sens
3L	13975363	3L_13975363_SNP [dm3] 3L_13982263_SNP [dm6]	C	T	6.885e^-5	0.637	SYNONYMOUS_CODING CG17364 INTRON CG17364
3R	14714699	3R_14714699_SNP [dm3] 3R_18888977_SNP [dm6]	A	G	6.903e^-5	0.637	INTERGENIC
2R	8333018	2R_8333018_SNP [dm3] 2R_12445513_SNP [dm6]	G	A	6.914e^-5	0.637	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2L	3695799	2L_3695799_SNP [dm3] 2L_3695799_SNP [dm6]	G	A	6.968e^-5	0.637	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
3L	2331432	3L_2331432_SNP [dm3] 3L_2331432_SNP [dm6]	G	A	6.973e^-5	0.637	INTRON MsR1
2R	19974129	2R_19974129_SNP [dm3] 2R_24086606_SNP [dm6]	G	T	7.056e^-5	0.637	UTR_5_PRIME snama DOWNSTREAM CG16786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974764	2R_19974764_SNP [dm3] 2R_24087241_SNP [dm6]	T	C	7.056e^-5	0.637	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8587302	2R_8587302_INS [dm3] 2R_12699797_INS [dm6]	A	ATGTATCATTATTCACTAAA...	7.060e^-5	0.637	UPSTREAM wuc INTERGENIC
2R	8344038	2R_8344038_SNP [dm3] 2R_12456533_SNP [dm6]	G	A	7.065e^-5	0.637	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7397207	3R_7397207_SNP [dm3] 3R_11571485_SNP [dm6]	T	C	7.163e^-5	0.637	SYNONYMOUS_CODING Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7636031	2R_7636031_INS [dm3] 2R_11748526_INS [dm6]	C	TTT	7.195e^-5	0.637	INTERGENIC
X	3811901	X_3811901_SNP [dm3] X_3917868_SNP [dm6]	G	C	7.202e^-5	0.637	INTRON CG42541
4	951940	4_951940_SNP [dm3] 4_931314_SNP [dm6]	C	A	7.303e^-5	0.637	UPSTREAM eIF4G INTERGENIC	transposable element FlyBase
2L	20261736	2L_20261736_SNP [dm3] 2L_20261736_SNP [dm6]	T	G	7.382e^-5	0.637	INTERGENIC
2L	5642548	2L_5642548_SNP [dm3] 2L_5642548_SNP [dm6]	C	A	7.385e^-5	0.637	DOWNSTREAM mir-963 & 1 other INTRON CG31646
3R	18523210	3R_18523210_SNP [dm3] 3R_22697488_SNP [dm6]	C	T	7.388e^-5	0.637	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
4	655975	4_655975_SNP [dm3] 4_635349_SNP [dm6]	A	G	7.410e^-5	0.637	UTR_3_PRIME CG1732 DOWNSTREAM CG9935
2R	9608662	2R_9608662_SNP [dm3] 2R_13721157_SNP [dm6]	G	A	7.464e^-5	0.637	INTRON fas
2L	12416860	2L_12416860_SNP [dm3] 2L_12416860_SNP [dm6]	A	G	7.533e^-5	0.637	INTRON vir-1
X	14359040	X_14359040_SNP [dm3] X_14465007_SNP [dm6]	G	A	7.577e^-5	0.637	INTERGENIC
2R	10407361	2R_10407361_SNP [dm3] 2R_14519856_SNP [dm6]	G	T	7.666e^-5	0.637	INTERGENIC
3R	7376757	3R_7376757_SNP [dm3] 3R_11551035_SNP [dm6]	C	T	7.713e^-5	0.637	INTERGENIC	TF binding site mE1_TFBS_inv
3R	27237997	3R_27237997_SNP [dm3] 3R_31412275_SNP [dm6]	G	C	7.716e^-5	0.637	INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	10226087	3L_10226087_SNP [dm3] 3L_10232987_SNP [dm6]	A	G	7.735e^-5	0.637	INTERGENIC
2R	8327186	2R_8327186_SNP [dm3] 2R_12439681_SNP [dm6]	A	G	7.756e^-5	0.637	DOWNSTREAM CG30334 INTRON Dyb
2R	9635485	2R_9635485_SNP [dm3] 2R_13747980_SNP [dm6]	C	T	7.834e^-5	0.637	UTR_3_PRIME fas
2R	3776384	2R_3776384_DEL [dm3] 2R_7888879_DEL [dm6]	GAATTTTA	G	7.926e^-5	0.637	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27237996	3R_27237996_SNP [dm3] 3R_31412274_SNP [dm6]	T	G	7.939e^-5	0.637	INTRON Gprk2	TF binding site mE1_TFBS_cad
3R	18523232	3R_18523232_SNP [dm3] 3R_22697510_SNP [dm6]	C	T	7.953e^-5	0.637	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
2R	6728792	2R_6728792_SNP [dm3] 2R_10841287_SNP [dm6]	T	G	7.983e^-5	0.637	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7598290	X_7598290_SNP [dm3] X_7704257_SNP [dm6]	A	T	8.005e^-5	0.637	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10500613	3R_10500613_SNP [dm3] 3R_14674891_SNP [dm6]	G	T	8.013e^-5	0.637	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	20293934	2L_20293934_SNP [dm3] 2L_20293934_SNP [dm6]	T	C	8.084e^-5	0.637	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20225667	2L_20225667_SNP [dm3] 2L_20225667_SNP [dm6]	G	A	8.117e^-5	0.637	INTERGENIC
3L	3652102	3L_3652102_SNP [dm3] 3L_3652102_SNP [dm6]	T	C	8.123e^-5	0.637	INTRON dar1
3R	19054436	3R_19054436_SNP [dm3] 3R_23228714_SNP [dm6]	T	C	8.142e^-5	0.637	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2412228	3L_2412228_SNP [dm3] 3L_2412228_SNP [dm6]	A	G	8.240e^-5	0.637	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA
3L	10110025	3L_10110025_SNP [dm3] 3L_10116925_SNP [dm6]	T	A	8.260e^-5	0.637	INTRON dpr6
3L	16635774	3L_16635774_SNP [dm3] 3L_16642674_SNP [dm6]	A	C	8.260e^-5	0.637	INTRON Abl
3L	9351646	3L_9351646_SNP [dm3] 3L_9358546_SNP [dm6]	A	G	8.280e^-5	0.637	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	27235972	3R_27235972_SNP [dm3] 3R_31410250_SNP [dm6]	T	G	8.294e^-5	0.637	INTRON Gprk2
2R	7661675	2R_7661675_SNP [dm3] 2R_11774170_SNP [dm6]	G	A	8.310e^-5	0.637	INTRON ths
3L	6676554	3L_6676554_SNP [dm3] 3L_6683454_SNP [dm6]	C	G	8.318e^-5	0.637	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	22566852	2L_22566852_DEL [dm3] 2L_22674120_DEL [dm6]	TGAAAAAAGAACAAACAATT...	T	8.335e^-5	0.637	INTRON CG40006
2L	19647533	2L_19647533_DEL [dm3] 2L_19647533_DEL [dm6]	TAT	T	8.354e^-5	0.637	INTRON Lar
3L	7098124	3L_7098124_SNP [dm3] 3L_7105024_SNP [dm6]	G	A	8.360e^-5	0.637	INTRON form3
2R	9444906	2R_9444906_SNP [dm3] 2R_13557401_SNP [dm6]	T	A	8.386e^-5	0.637	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17392043	3L_17392043_SNP [dm3] 3L_17398943_SNP [dm6]	T	C	8.403e^-5	0.637	INTRON blot
2R	14551541	2R_14551541_SNP [dm3] 2R_18664036_SNP [dm6]	C	T	8.450e^-5	0.637	DOWNSTREAM CG33136 INTERGENIC
3R	24886708	3R_24886708_SNP [dm3] 3R_29060986_SNP [dm6]	A	G	8.454e^-5	0.637	INTRON Cul5	TF binding site mE1_TFBS_sens
X	3811904	X_3811904_SNP [dm3] X_3917871_SNP [dm6]	C	T	8.517e^-5	0.639	INTRON CG42541
3R	17776174	3R_17776174_SNP [dm3] 3R_21950452_SNP [dm6]	T	A	8.551e^-5	0.639	INTRON Eip93F	TF binding site mE1_TFBS_zfh1
3L	1477298	3L_1477298_SNP [dm3] 3L_1477298_SNP [dm6]	G	T	8.605e^-5	0.64	UPSTREAM robl62A INTRON stet
2R	9755498	2R_9755498_SNP [dm3] 2R_13867993_SNP [dm6]	G	A	8.738e^-5	0.642	INTRON shot
3R	19504989	3R_19504989_SNP [dm3] 3R_23679267_SNP [dm6]	C	T	8.767e^-5	0.642	UPSTREAM eIF-3p66 DOWNSTREAM CG13822 INTRON CG10157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16752038	3L_16752038_SNP [dm3] 3L_16758938_SNP [dm6]	C	T	8.770e^-5	0.642	INTERGENIC
3L	2564301	3L_2564301_SNP [dm3] 3L_2564301_SNP [dm6]	G	T	8.805e^-5	0.642	INTRON msn
3L	15842359	3L_15842359_SNP [dm3] 3L_15849259_SNP [dm6]	G	T	8.818e^-5	0.642	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_kn
3L	19341983	3L_19341983_SNP [dm3] 3L_19348883_SNP [dm6]	T	C	8.906e^-5	0.642	INTRON CG32206
2R	8587393	2R_8587393_SNP [dm3] 2R_12699888_SNP [dm6]	C	T	9.047e^-5	0.642	UPSTREAM wuc INTERGENIC
3L	10725900	3L_10725900_INS [dm3] 3L_10732800_INS [dm6]	T	TGTTGCT	9.103e^-5	0.642	INTERGENIC
3L	10725902	3L_10725902_SNP [dm3] 3L_10732802_SNP [dm6]	C	G	9.103e^-5	0.642	INTERGENIC
3L	10725903	3L_10725903_SNP [dm3] 3L_10732803_SNP [dm6]	G	C	9.103e^-5	0.642	INTERGENIC
2R	8590006	2R_8590006_SNP [dm3] 2R_12702501_SNP [dm6]	C	A	9.109e^-5	0.642	INTERGENIC
4	1021785	4_1021785_SNP [dm3] 4_1001159_SNP [dm6]	C	T	9.186e^-5	0.642	INTRON toy	transposable element FlyBase
2L	10381662	2L_10381662_SNP [dm3] 2L_10381662_SNP [dm6]	C	T	9.217e^-5	0.642	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
3L	6093889	3L_6093889_SNP [dm3] 3L_6100789_SNP [dm6]	T	A	9.265e^-5	0.642	INTRON Ets65A
2R	19976832	2R_19976832_SNP [dm3] 2R_24089309_SNP [dm6]	G	A	9.283e^-5	0.642	UTR_3_PRIME snama INTRON snama
X	13239788	X_13239788_SNP [dm3] X_13345755_SNP [dm6]	T	A	9.285e^-5	0.642	UPSTREAM CR45708 EXON CR45709	TF binding site mE1_TFBS_cnc
X	11823125	X_11823125_SNP [dm3] X_11929092_SNP [dm6]	A	G	9.300e^-5	0.642	SYNONYMOUS_CODING CG10362
2R	4006930	2R_4006930_SNP [dm3] 2R_8119425_SNP [dm6]	T	C	9.303e^-5	0.642	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
3R	7397053	3R_7397053_SNP [dm3] 3R_11571331_SNP [dm6]	G	T	9.308e^-5	0.642	INTRON Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22293504	3R_22293504_SNP [dm3] 3R_26467782_SNP [dm6]	C	T	9.354e^-5	0.642	SYNONYMOUS_CODING CG5455
2R	9625875	2R_9625875_SNP [dm3] 2R_13738370_SNP [dm6]	C	T	9.404e^-5	0.642	INTRON fas
3L	10745003	3L_10745003_SNP [dm3] 3L_10751903_SNP [dm6]	T	G	9.444e^-5	0.642	INTERGENIC
3R	19030580	3R_19030580_INS [dm3] 3R_23204858_INS [dm6]	A	AT	9.518e^-5	0.642	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2L	3960310	2L_3960310_DEL [dm3] 2L_3960310_DEL [dm6]	TTATT	T	9.559e^-5	0.642	INTRON fred
2R	16934371	2R_16934371_SNP [dm3] 2R_21046866_SNP [dm6]	A	G	9.563e^-5	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	22125105	2L_22125105_SNP [dm3] 2L_22125105_SNP [dm6]	A	G	9.635e^-5	0.642	UTR_3_PRIME CycK & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10374437	3L_10374437_SNP [dm3] 3L_10381337_SNP [dm6]	G	A	9.676e^-5	0.642	INTERGENIC
3R	25821934	3R_25821934_SNP [dm3] 3R_29996212_SNP [dm6]	T	C	9.689e^-5	0.642	SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19994027	2R_19994027_SNP [dm3] 2R_24106504_SNP [dm6]	C	T	9.706e^-5	0.642	SYNONYMOUS_CODING enok DOWNSTREAM CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20141323	2L_20141323_SNP [dm3] 2L_20141323_SNP [dm6]	T	A	9.851e^-5	0.642	INTERGENIC
2R	5158692	2R_5158692_SNP [dm3] 2R_9271187_SNP [dm6]	T	C	9.886e^-5	0.642	UPSTREAM Pkn INTRON Pkn	TF binding site mE1_TFBS_HSA
2L	10806516	2L_10806516_SNP [dm3] 2L_10806516_SNP [dm6]	C	A	9.979e^-5	0.642	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
2L	11917911	2L_11917911_SNP [dm3] 2L_11917911_SNP [dm6]	T	A	9.983e^-5	0.642	INTRON Pde1c
3R	9685444	3R_9685444_SNP [dm3] 3R_13859722_SNP [dm6]	G	A	1.004e^-4	0.642	INTERGENIC
2L	13141397	2L_13141397_SNP [dm3] 2L_13141397_SNP [dm6]	A	G	1.006e^-4	0.642	INTERGENIC
3L	20979911	3L_20979911_DEL [dm3] 3L_20986811_DEL [dm6]	CGACACGCGGCCGACGAGAG...	C	1.007e^-4	0.642	INTERGENIC
3R	21389912	3R_21389912_SNP [dm3] 3R_25564190_SNP [dm6]	T	A	1.008e^-4	0.642	INTRON msi
3L	4873268	3L_4873268_SNP [dm3] 3L_4873268_SNP [dm6]	T	C	1.011e^-4	0.642	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10500617	3R_10500617_SNP [dm3] 3R_14674895_SNP [dm6]	A	G	1.014e^-4	0.642	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	7803619	3L_7803619_DEL [dm3] 3L_7810519_DEL [dm6]	ATA	A	1.014e^-4	0.642	UPSTREAM CG32369 DOWNSTREAM Pdp1 INTERGENIC
3L	10490610	3L_10490610_SNP [dm3] 3L_10497510_SNP [dm6]	A	G	1.017e^-4	0.642	INTRON A2bp1
3R	26757018	3R_26757018_SNP [dm3] 3R_30931296_SNP [dm6]	C	T	1.020e^-4	0.642	DOWNSTREAM Ptx1 INTERGENIC
3R	25961269	3R_25961269_SNP [dm3] 3R_30135547_SNP [dm6]	A	T	1.039e^-4	0.642	NON_SYNONYMOUS_CODING AdoR UPSTREAM Tpi	TF binding site mE1_TFBS_chinmo
3L	7731406	3L_7731406_DEL [dm3] 3L_7738306_DEL [dm6]	TG	T	1.039e^-4	0.642	INTRON CG32373 & 1 other
3R	6009157	3R_6009157_SNP [dm3] 3R_10183435_SNP [dm6]	T	C	1.039e^-4	0.642	INTRON CG12814
3R	19030437	3R_19030437_SNP [dm3] 3R_23204715_SNP [dm6]	C	T	1.055e^-4	0.642	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	16918794	2R_16918794_SNP [dm3] 2R_21031289_SNP [dm6]	C	T	1.056e^-4	0.642	INTERGENIC
2R	6279782	2R_6279782_SNP [dm3] 2R_10392277_SNP [dm6]	G	T	1.056e^-4	0.642	INTRON CG42732
3R	22832673	3R_22832673_SNP [dm3] 3R_27006951_SNP [dm6]	G	A	1.060e^-4	0.642	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
2L	11082527	2L_11082527_SNP [dm3] 2L_11082527_SNP [dm6]	T	G	1.070e^-4	0.642	DOWNSTREAM AstCC INTERGENIC
2R	9444916	2R_9444916_INS [dm3] 2R_13557411_INS [dm6]	T	TAT	1.086e^-4	0.642	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10407371	2R_10407371_SNP [dm3] 2R_14519866_SNP [dm6]	A	G	1.089e^-4	0.642	INTERGENIC
X	22040732	X_22040732_SNP [dm3] X_22638896_SNP [dm6]	C	T	1.089e^-4	0.642	INTERGENIC
2L	20313551	2L_20313551_SNP [dm3] 2L_20313551_SNP [dm6]	G	T	1.090e^-4	0.642	INTRON spir
3R	27217756	3R_27217756_SNP [dm3] 3R_31392034_SNP [dm6]	C	A	1.093e^-4	0.642	SYNONYMOUS_CODING CG31204 DOWNSTREAM CG1607
2L	20137541	2L_20137541_SNP [dm3] 2L_20137541_SNP [dm6]	A	G	1.096e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11417322	X_11417322_DEL [dm3] X_11523289_DEL [dm6]	AA	A	1.103e^-4	0.642	INTRON Drak
2L	5679563	2L_5679563_SNP [dm3] 2L_5679563_SNP [dm6]	A	C	1.107e^-4	0.642	DOWNSTREAM CG12511 INTERGENIC
2L	9440562	2L_9440562_SNP [dm3] 2L_9440562_SNP [dm6]	G	T	1.112e^-4	0.642	SYNONYMOUS_CODING CG33723 INTRON numb
2L	13263711	2L_13263711_SNP [dm3] 2L_13263711_SNP [dm6]	C	T	1.116e^-4	0.642	INTRON CG44085
3R	27235983	3R_27235983_SNP [dm3] 3R_31410261_SNP [dm6]	C	T	1.117e^-4	0.642	INTRON Gprk2
X	17605233	X_17605233_SNP [dm3] X_17711200_SNP [dm6]	T	A	1.126e^-4	0.642	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24817518	3R_24817518_SNP [dm3] 3R_28991796_SNP [dm6]	T	A	1.129e^-4	0.642	INTERGENIC
4	956145	4_956145_SNP [dm3] 4_935519_SNP [dm6]	C	G	1.130e^-4	0.642	INTERGENIC	transposable element FlyBase
3R	20901280	3R_20901280_SNP [dm3] 3R_25075558_SNP [dm6]	G	T	1.138e^-4	0.642	UPSTREAM CG9996 INTRON CG11920	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2751302	3R_2751302_SNP [dm3] 3R_6925580_SNP [dm6]	G	C	1.144e^-4	0.642	INTRON Antp
X	10918144	X_10918144_SNP [dm3] X_11024111_SNP [dm6]	A	G	1.158e^-4	0.642	INTRON CG42339
2R	9635460	2R_9635460_SNP [dm3] 2R_13747955_SNP [dm6]	C	A	1.158e^-4	0.642	UTR_3_PRIME fas
3L	2712452	3L_2712452_SNP [dm3] 3L_2712452_SNP [dm6]	T	A	1.163e^-4	0.642	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20000332	2R_20000332_SNP [dm3] 2R_24112809_SNP [dm6]	A	C	1.166e^-4	0.642	NON_SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17538055	3R_17538055_SNP [dm3] 3R_21712333_SNP [dm6]	T	A	1.169e^-4	0.642	INTRON CG31176
2L	3958473	2L_3958473_SNP [dm3] 2L_3958473_SNP [dm6]	C	G	1.175e^-4	0.642	INTRON fred
3L	12418526	3L_12418526_SNP [dm3] 3L_12425426_SNP [dm6]	C	T	1.178e^-4	0.642	SYNONYMOUS_CODING toe	TF binding site mE1_TFBS_cad
2R	19997463	2R_19997463_SNP [dm3] 2R_24109940_SNP [dm6]	A	G	1.179e^-4	0.642	SYNONYMOUS_CODING CG4049
2R	19998106	2R_19998106_SNP [dm3] 2R_24110583_SNP [dm6]	C	T	1.179e^-4	0.642	SYNONYMOUS_CODING CG4049
2R	20002231	2R_20002231_SNP [dm3] 2R_24114708_SNP [dm6]	C	T	1.179e^-4	0.642	START_GAINED CG3253 UTR_5_PRIME CG3253 UPSTREAM CG4049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	20003420	2R_20003420_SNP [dm3] 2R_24115897_SNP [dm6]	T	G	1.179e^-4	0.642	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
2R	20003613	2R_20003613_SNP [dm3] 2R_24116090_SNP [dm6]	G	T	1.179e^-4	0.642	UPSTREAM CG3257 INTRON CG3253
2R	20003784	2R_20003784_SNP [dm3] 2R_24116261_SNP [dm6]	C	T	1.179e^-4	0.642	SYNONYMOUS_CODING CG3253 UPSTREAM CG3257
2L	12415402	2L_12415402_SNP [dm3] 2L_12415402_SNP [dm6]	C	T	1.180e^-4	0.642	INTRON vir-1
X	11823108	X_11823108_SNP [dm3] X_11929075_SNP [dm6]	G	A	1.181e^-4	0.642	SYNONYMOUS_CODING CG10362
2R	4827844	2R_4827844_SNP [dm3] 2R_8940339_SNP [dm6]	C	A	1.186e^-4	0.642	UPSTREAM CG13748 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1778783	2R_1778783_SNP [dm3] 2R_5891278_SNP [dm6]	C	T	1.190e^-4	0.642	INTERGENIC
4	802666	4_802666_SNP [dm3] 4_782040_SNP [dm6]	A	G	1.190e^-4	0.642	INTRON MED26	transposable element FlyBase
3R	24886672	3R_24886672_SNP [dm3] 3R_29060950_SNP [dm6]	T	C	1.196e^-4	0.642	SYNONYMOUS_CODING Cul5	TF binding site mE1_TFBS_sens
2L	20480753	2L_20480753_SNP [dm3] 2L_20480753_SNP [dm6]	G	T	1.201e^-4	0.642	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	15842331	3L_15842331_SNP [dm3] 3L_15849231_SNP [dm6]	C	G	1.203e^-4	0.642	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_kn
2R	20003400	2R_20003400_SNP [dm3] 2R_24115877_SNP [dm6]	T	C	1.214e^-4	0.642	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
3L	5485094	3L_5485094_SNP [dm3] 3L_5491994_SNP [dm6]	C	A	1.215e^-4	0.642	INTERGENIC
2R	9502577	2R_9502577_SNP [dm3] 2R_13615072_SNP [dm6]	C	G	1.219e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3487249	2L_3487249_SNP [dm3] 2L_3487249_SNP [dm6]	G	A	1.221e^-4	0.642	INTRON CG15414
2L	13142031	2L_13142031_SNP [dm3] 2L_13142031_SNP [dm6]	C	T	1.222e^-4	0.642	DOWNSTREAM CG9928 INTERGENIC
3L	8830832	3L_8830832_SNP [dm3] 3L_8837732_SNP [dm6]	A	G	1.229e^-4	0.642	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	26256477	3R_26256477_SNP [dm3] 3R_30430755_SNP [dm6]	C	T	1.230e^-4	0.642	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
2R	6281628	2R_6281628_SNP [dm3] 2R_10394123_SNP [dm6]	A	C	1.231e^-4	0.642	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2R	4765289	2R_4765289_INS [dm3] 2R_8877784_INS [dm6]	A	AA	1.235e^-4	0.642	INTRON RyR	TF binding site mE1_TFBS_HSA
3R	17140148	3R_17140148_SNP [dm3] 3R_21314426_SNP [dm6]	A	G	1.236e^-4	0.642	EXON Hsromega
X	11232463	X_11232463_INS [dm3] X_11338430_INS [dm6]	A	AAACA	1.238e^-4	0.642	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	11649434	2R_11649434_INS [dm3] 2R_15761929_INS [dm6]	A	AA	1.239e^-4	0.642	UTR_3_PRIME CG30089 DOWNSTREAM CG30089 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	10062129	3R_10062129_SNP [dm3] 3R_14236407_SNP [dm6]	T	C	1.243e^-4	0.642	DOWNSTREAM CG43291 INTERGENIC
2R	7636044	2R_7636044_SNP [dm3] 2R_11748539_SNP [dm6]	A	T	1.245e^-4	0.642	INTERGENIC
3R	19030611	3R_19030611_SNP [dm3] 3R_23204889_SNP [dm6]	T	C	1.249e^-4	0.642	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	18474022	3L_18474022_SNP [dm3] 3L_18480922_SNP [dm6]	A	G	1.251e^-4	0.642	INTERGENIC
3R	22832691	3R_22832691_SNP [dm3] 3R_27006969_SNP [dm6]	G	T	1.255e^-4	0.642	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
2L	10831698	2L_10831698_SNP [dm3] 2L_10831698_SNP [dm6]	C	T	1.264e^-4	0.642	NON_SYNONYMOUS_CODING Nos	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10633734	2R_10633734_SNP [dm3] 2R_14746229_SNP [dm6]	T	C	1.266e^-4	0.642	UTR_3_PRIME Dro UPSTREAM CG12858
X	6414560	X_6414560_SNP [dm3] X_6520527_SNP [dm6]	T	C	1.272e^-4	0.642	INTRON CG42340
2L	20264644	2L_20264644_INS [dm3] 2L_20264644_INS [dm6]	T	TGTTGGAATATACTATTCAA...	1.273e^-4	0.642	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18865299	3R_18865299_SNP [dm3] 3R_23039577_SNP [dm6]	A	T	1.276e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5590869	3L_5590869_SNP [dm3] 3L_5597769_SNP [dm6]	C	A	1.277e^-4	0.642	DOWNSTREAM CG5150 & 1 other INTERGENIC
2R	4922648	2R_4922648_SNP [dm3] 2R_9035143_SNP [dm6]	G	A	1.284e^-4	0.642	INTERGENIC
X	12236326	X_12236326_INS [dm3] X_12342293_INS [dm6]	T	TACAA	1.289e^-4	0.642	INTERGENIC
2R	19997567	2R_19997567_SNP [dm3] 2R_24110044_SNP [dm6]	C	T	1.291e^-4	0.642	NON_SYNONYMOUS_CODING CG4049
3L	2710916	3L_2710916_SNP [dm3] 3L_2710916_SNP [dm6]	T	C	1.297e^-4	0.642	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14219511	3L_14219511_INS [dm3] 3L_14226411_INS [dm6]	G	GAG	1.297e^-4	0.642	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10407363	2R_10407363_INS [dm3] 2R_14519858_INS [dm6]	T	AA	1.298e^-4	0.642	INTERGENIC
2L	9360689	2L_9360689_SNP [dm3] 2L_9360689_SNP [dm6]	T	C	1.303e^-4	0.642	INTERGENIC
2R	18972454	2R_18972454_SNP [dm3] 2R_23084931_SNP [dm6]	G	A	1.304e^-4	0.642	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5307053	3L_5307053_SNP [dm3] 3L_5313953_SNP [dm6]	T	C	1.310e^-4	0.642	INTERGENIC
2L	9853732	2L_9853732_SNP [dm3] 2L_9853732_SNP [dm6]	A	T	1.310e^-4	0.642	INTRON nAChRalpha6
3R	22832672	3R_22832672_SNP [dm3] 3R_27006950_SNP [dm6]	G	T	1.311e^-4	0.642	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
3L	4633019	3L_4633019_SNP [dm3] 3L_4633019_SNP [dm6]	G	A	1.315e^-4	0.642	INTRON axo
3R	26470032	3R_26470032_SNP [dm3] 3R_30644310_SNP [dm6]	A	T	1.315e^-4	0.642	SYNONYMOUS_CODING CG31013
2L	10389218	2L_10389218_SNP [dm3] 2L_10389218_SNP [dm6]	G	A	1.317e^-4	0.642	INTRON da	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7728910	3L_7728910_SNP [dm3] 3L_7735810_SNP [dm6]	A	T	1.320e^-4	0.642	INTRON CG32373 & 1 other
3L	6093898	3L_6093898_SNP [dm3] 3L_6100798_SNP [dm6]	A	T	1.320e^-4	0.642	INTRON Ets65A
3L	14153833	3L_14153833_SNP [dm3] 3L_14160733_SNP [dm6]	T	G	1.325e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs
3R	2036760	3R_2036760_SNP [dm3] 3R_6211038_SNP [dm6]	G	T	1.326e^-4	0.642	START_GAINED Osi2 UTR_5_PRIME Osi2 UPSTREAM Osi2 INTRON Osi2
2R	4821180	2R_4821180_SNP [dm3] 2R_8933675_SNP [dm6]	C	T	1.329e^-4	0.642	NON_SYNONYMOUS_CODING CG13749 DOWNSTREAM PAN2 & 1 other
2L	16997143	2L_16997143_SNP [dm3] 2L_16997143_SNP [dm6]	T	G	1.330e^-4	0.642	INTERGENIC
X	12290967	X_12290967_SNP [dm3] X_12396934_SNP [dm6]	C	A	1.338e^-4	0.642	INTERGENIC
2R	4805943	2R_4805943_SNP [dm3] 2R_8918438_SNP [dm6]	G	A	1.338e^-4	0.642	SYNONYMOUS_CODING CG34219 DOWNSTREAM CG8248 & 1 other
3L	7144202	3L_7144202_SNP [dm3] 3L_7151102_SNP [dm6]	A	C	1.339e^-4	0.642	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9611291	2R_9611291_SNP [dm3] 2R_13723786_SNP [dm6]	G	A	1.346e^-4	0.642	INTRON fas
3R	19581685	3R_19581685_SNP [dm3] 3R_23755963_SNP [dm6]	C	T	1.355e^-4	0.642	SYNONYMOUS_CODING Hrd3
2L	19737165	2L_19737165_SNP [dm3] 2L_19737165_SNP [dm6]	A	G	1.355e^-4	0.642	DOWNSTREAM Nf-YB INTERGENIC
2L	20145317	2L_20145317_SNP [dm3] 2L_20145317_SNP [dm6]	C	T	1.361e^-4	0.642	INTERGENIC
3R	19148882	3R_19148882_SNP [dm3] 3R_23323160_SNP [dm6]	G	A	1.368e^-4	0.642	INTRON pnt
3L	7144194	3L_7144194_SNP [dm3] 3L_7151094_SNP [dm6]	G	T	1.370e^-4	0.642	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20000870	2R_20000870_SNP [dm3] 2R_24113347_SNP [dm6]	A	C	1.372e^-4	0.642	INTRON CG4049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10915191	3L_10915191_SNP [dm3] 3L_10922091_SNP [dm6]	A	G	1.372e^-4	0.642	INTERGENIC
3L	2712283	3L_2712283_SNP [dm3] 3L_2712283_SNP [dm6]	A	G	1.375e^-4	0.642	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1392353	3L_1392353_SNP [dm3] 3L_1392353_SNP [dm6]	A	G	1.375e^-4	0.642	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	19707285	2R_19707285_DEL [dm3] 2R_23819762_DEL [dm6]	CCAATCGC	C	1.381e^-4	0.642	UPSTREAM CG5549 INTERGENIC
3L	6395490	3L_6395490_DEL [dm3] 3L_6402390_DEL [dm6]	TA	T	1.383e^-4	0.642	INTRON CG42747
3R	5978317	3R_5978317_SNP [dm3] 3R_10152595_SNP [dm6]	T	A	1.387e^-4	0.642	UPSTREAM CG34303 INTRON Invadolysin
X	5397179	X_5397179_SNP [dm3] X_5503146_SNP [dm6]	T	A	1.387e^-4	0.642	DOWNSTREAM CG4151 INTERGENIC
2R	15174085	2R_15174085_SNP [dm3] 2R_19286580_SNP [dm6]	G	A	1.391e^-4	0.642	NON_SYNONYMOUS_CODING CG10474	TF binding site mE1_TFBS_cad
2R	3848480	2R_3848480_SNP [dm3] 2R_7960975_SNP [dm6]	G	C	1.391e^-4	0.642	SYNONYMOUS_CODING Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	11529941	3R_11529941_SNP [dm3] 3R_15704219_SNP [dm6]	T	A	1.395e^-4	0.642	UPSTREAM CG5404 INTERGENIC
X	11049303	X_11049303_SNP [dm3] X_11155270_SNP [dm6]	A	C	1.395e^-4	0.642	INTRON Dlic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9853728	2L_9853728_SNP [dm3] 2L_9853728_SNP [dm6]	A	T	1.404e^-4	0.642	INTRON nAChRalpha6
2L	20146910	2L_20146910_SNP [dm3] 2L_20146910_SNP [dm6]	T	C	1.405e^-4	0.642	INTERGENIC
X	3870160	X_3870160_SNP [dm3] X_3976127_SNP [dm6]	G	A	1.415e^-4	0.642	INTERGENIC
2R	4819600	2R_4819600_SNP [dm3] 2R_8932095_SNP [dm6]	G	A	1.419e^-4	0.642	SYNONYMOUS_CODING PAN2
2R	10471158	2R_10471158_SNP [dm3] 2R_14583653_SNP [dm6]	T	G	1.436e^-4	0.642	INTRON ttv	TF binding site mE1_TFBS_cad
X	2310627	X_2310627_SNP [dm3] X_2416594_SNP [dm6]	T	C	1.441e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2L	20511192	2L_20511192_SNP [dm3] 2L_20511192_SNP [dm6]	A	T	1.441e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19715834	X_19715834_DEL [dm3] X_19821801_DEL [dm6]	CTATACAAACTATCTA...	C	1.441e^-4	0.642	INTERGENIC
2L	10380928	2L_10380928_SNP [dm3] 2L_10380928_SNP [dm6]	C	T	1.442e^-4	0.642	SYNONYMOUS_CODING gny	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10236096	3R_10236096_SNP [dm3] 3R_14410374_SNP [dm6]	G	A	1.444e^-4	0.642	SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	13795439	X_13795439_SNP [dm3] X_13901406_SNP [dm6]	A	G	1.444e^-4	0.642	INTRON mamo
X	13795446	X_13795446_SNP [dm3] X_13901413_SNP [dm6]	A	G	1.449e^-4	0.642	INTRON mamo
2R	4836972	2R_4836972_SNP [dm3] 2R_8949467_SNP [dm6]	G	A	1.450e^-4	0.642	DOWNSTREAM CG8229 INTRON CG8229 & 1 other
3R	26155213	3R_26155213_SNP [dm3] 3R_30329491_SNP [dm6]	T	A	1.453e^-4	0.642	INTRON hdc
3R	22420618	3R_22420618_SNP [dm3] 3R_26594896_SNP [dm6]	C	T	1.454e^-4	0.642	UTR_3_PRIME scrib INTRON scrib
3L	3898641	3L_3898641_SNP [dm3] 3L_3898641_SNP [dm6]	A	G	1.460e^-4	0.642	SYNONYMOUS_CODING Ccz1 DOWNSTREAM Ubi-p63E	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16084402	2R_16084402_SNP [dm3] 2R_20196897_SNP [dm6]	T	A	1.462e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26757259	3R_26757259_SNP [dm3] 3R_30931537_SNP [dm6]	A	G	1.462e^-4	0.642	DOWNSTREAM Ptx1 INTERGENIC
3R	10824055	3R_10824055_SNP [dm3] 3R_14998333_SNP [dm6]	C	G	1.466e^-4	0.642	INTERGENIC
3L	9389488	3L_9389488_DEL [dm3] 3L_9396388_DEL [dm6]	TGAATGTTGTTTATAAT...	T	1.466e^-4	0.642	INTRON CG4080
3R	13649897	3R_13649897_SNP [dm3] 3R_17824175_SNP [dm6]	A	G	1.471e^-4	0.642	INTRON tinc
2R	10407359	2R_10407359_SNP [dm3] 2R_14519854_SNP [dm6]	A	C	1.477e^-4	0.642	INTERGENIC
X	19715832	X_19715832_SNP [dm3] X_19821799_SNP [dm6]	T	A	1.481e^-4	0.642	INTERGENIC
3R	23134913	3R_23134913_SNP [dm3] 3R_27309191_SNP [dm6]	C	T	1.482e^-4	0.642	INTRON CG3339
2R	8590007	2R_8590007_SNP [dm3] 2R_12702502_SNP [dm6]	A	C	1.483e^-4	0.642	INTERGENIC
3L	1744184	3L_1744184_SNP [dm3] 3L_1744184_SNP [dm6]	T	C	1.492e^-4	0.642	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8333022	2R_8333022_SNP [dm3] 2R_12445517_SNP [dm6]	A	G	1.495e^-4	0.642	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	19441268	2R_19441268_DEL [dm3] 2R_23553745_DEL [dm6]	AGTGATTAATTAAGA...	A	1.496e^-4	0.642	DOWNSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9630183	2R_9630183_SNP [dm3] 2R_13742678_SNP [dm6]	G	T	1.500e^-4	0.642	INTRON fas
2R	10592305	2R_10592305_SNP [dm3] 2R_14704800_SNP [dm6]	G	A	1.501e^-4	0.642	INTRON mspo
3R	24844541	3R_24844541_SNP [dm3] 3R_29018819_SNP [dm6]	A	C	1.507e^-4	0.642	INTRON wat
3L	18833811	3L_18833811_INS [dm3] 3L_18840711_INS [dm6]	A	AG	1.514e^-4	0.642	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	19715833	X_19715833_SNP [dm3] X_19821800_SNP [dm6]	A	G	1.516e^-4	0.642	INTERGENIC
3R	24606787	3R_24606787_SNP [dm3] 3R_28781065_SNP [dm6]	A	G	1.516e^-4	0.642	INTERGENIC
3R	25117448	3R_25117448_SNP [dm3] 3R_29291726_SNP [dm6]	C	G	1.516e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21977756	2L_21977756_DEL [dm3] 2L_21977756_DEL [dm6]	CTGACAC	C	1.518e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19153967	3R_19153967_SNP [dm3] 3R_23328245_SNP [dm6]	G	A	1.521e^-4	0.642	INTRON pnt
X	20445771	X_20445771_SNP [dm3] X_20574744_SNP [dm6]	C	T	1.522e^-4	0.642	DOWNSTREAM CG42580 INTERGENIC
X	5703145	X_5703145_SNP [dm3] X_5809112_SNP [dm6]	C	T	1.529e^-4	0.642	INTRON Prosbeta2R1	TF binding site mE1_TFBS_chinmo
3L	3987713	3L_3987713_SNP [dm3] 3L_3987713_SNP [dm6]	C	T	1.532e^-4	0.642	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11829986	3L_11829986_SNP [dm3] 3L_11836886_SNP [dm6]	T	A	1.540e^-4	0.642	UPSTREAM CG43064 INTERGENIC
2R	15542529	2R_15542529_SNP [dm3] 2R_19655024_SNP [dm6]	A	G	1.541e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18972461	2R_18972461_SNP [dm3] 2R_23084938_SNP [dm6]	A	G	1.543e^-4	0.642	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7224755	3L_7224755_SNP [dm3] 3L_7231655_SNP [dm6]	G	A	1.559e^-4	0.642	INTERGENIC
3R	13649896	3R_13649896_SNP [dm3] 3R_17824174_SNP [dm6]	T	G	1.564e^-4	0.642	INTRON tinc
3R	23952513	3R_23952513_SNP [dm3] 3R_28126791_SNP [dm6]	C	T	1.566e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9625944	2R_9625944_SNP [dm3] 2R_13738439_SNP [dm6]	T	C	1.574e^-4	0.642	INTRON fas
2R	6274738	2R_6274738_SNP [dm3] 2R_10387233_SNP [dm6]	A	G	1.575e^-4	0.642	INTRON CG42732
X	6452220	X_6452220_SNP [dm3] X_6558187_SNP [dm6]	T	C	1.589e^-4	0.642	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	8249570	2R_8249570_SNP [dm3] 2R_12362065_SNP [dm6]	T	A	1.592e^-4	0.642	SPLICE_SITE_REGION CG30043 INTRON CG30043
2L	9853701	2L_9853701_SNP [dm3] 2L_9853701_SNP [dm6]	C	A	1.612e^-4	0.642	INTRON nAChRalpha6
3R	15397895	3R_15397895_SNP [dm3] 3R_19572173_SNP [dm6]	G	A	1.625e^-4	0.642	INTRON Dys
2R	9487763	2R_9487763_SNP [dm3] 2R_13600258_SNP [dm6]	C	T	1.636e^-4	0.642	DOWNSTREAM CG43058 INTERGENIC
4	1031882	4_1031882_SNP [dm3] 4_1011256_SNP [dm6]	G	A	1.639e^-4	0.642	UTR_3_PRIME PlexA	transposable element FlyBase
2R	8589320	2R_8589320_SNP [dm3] 2R_12701815_SNP [dm6]	A	G	1.641e^-4	0.642	DOWNSTREAM wuc INTERGENIC
3L	4873169	3L_4873169_SNP [dm3] 3L_4873169_SNP [dm6]	C	T	1.642e^-4	0.642	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17232703	X_17232703_SNP [dm3] X_17338670_SNP [dm6]	C	T	1.649e^-4	0.642	INTERGENIC
3R	27237993	3R_27237993_SNP [dm3] 3R_31412271_SNP [dm6]	A	C	1.652e^-4	0.642	INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	10381527	2L_10381527_SNP [dm3] 2L_10381527_SNP [dm6]	G	A	1.655e^-4	0.642	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
3L	17213608	3L_17213608_SNP [dm3] 3L_17220508_SNP [dm6]	C	G	1.659e^-4	0.642	INTRON Rbp6
3L	11829970	3L_11829970_SNP [dm3] 3L_11836870_SNP [dm6]	T	A	1.666e^-4	0.642	UPSTREAM CG43064 INTERGENIC
2L	15480665	2L_15480665_SNP [dm3] 2L_15480665_SNP [dm6]	G	A	1.666e^-4	0.642	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	7728824	3L_7728824_SNP [dm3] 3L_7735724_SNP [dm6]	G	C	1.670e^-4	0.642	INTRON CG32373 & 1 other
2R	9609942	2R_9609942_SNP [dm3] 2R_13722437_SNP [dm6]	C	T	1.688e^-4	0.642	INTRON fas
3R	14338537	3R_14338537_SNP [dm3] 3R_18512815_SNP [dm6]	A	C	1.689e^-4	0.642	INTRON fru
3L	5917882	3L_5917882_SNP [dm3] 3L_5924782_SNP [dm6]	A	G	1.689e^-4	0.642	INTRON Vap-33B
3R	24886306	3R_24886306_SNP [dm3] 3R_29060584_SNP [dm6]	T	G	1.694e^-4	0.642	INTRON Cul5
3R	25185152	3R_25185152_SNP [dm3] 3R_29359430_SNP [dm6]	T	G	1.697e^-4	0.642	INTERGENIC
2R	19982493	2R_19982493_SNP [dm3] 2R_24094970_SNP [dm6]	T	C	1.699e^-4	0.642	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16934381	2R_16934381_SNP [dm3] 2R_21046876_SNP [dm6]	C	G	1.704e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	17707592	3R_17707592_SNP [dm3] 3R_21881870_SNP [dm6]	C	T	1.719e^-4	0.642	SYNONYMOUS_CODING CG31465 EXON CR45046
3L	3324978	3L_3324978_SNP [dm3] 3L_3324978_SNP [dm6]	A	C	1.722e^-4	0.642	SYNONYMOUS_CODING CG11526	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16584054	2R_16584054_SNP [dm3] 2R_20696549_SNP [dm6]	A	G	1.734e^-4	0.642	INTERGENIC
2R	3847748	2R_3847748_SNP [dm3] 2R_7960243_SNP [dm6]	C	T	1.739e^-4	0.642	UTR_3_PRIME Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25459134	3R_25459134_SNP [dm3] 3R_29633412_SNP [dm6]	C	T	1.743e^-4	0.642	INTRON Dop1R2
2R	19843183	2R_19843183_SNP [dm3] 2R_23955660_SNP [dm6]	G	T	1.743e^-4	0.642	NON_SYNONYMOUS_CODING thoc5 DOWNSTREAM CG16787	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19550802	2R_19550802_SNP [dm3] 2R_23663279_SNP [dm6]	G	A	1.751e^-4	0.642	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27192300	3R_27192300_SNP [dm3] 3R_31366578_SNP [dm6]	A	G	1.758e^-4	0.642	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13660862	3R_13660862_INS [dm3] 3R_17835140_INS [dm6]	T	TAGGT	1.760e^-4	0.642	INTRON tinc
2R	7371239	2R_7371239_SNP [dm3] 2R_11483734_SNP [dm6]	A	G	1.761e^-4	0.642	INTRON inv
3R	11529901	3R_11529901_SNP [dm3] 3R_15704179_SNP [dm6]	G	A	1.764e^-4	0.642	UPSTREAM CG5404 INTERGENIC
X	8563599	X_8563599_SNP [dm3] X_8669566_SNP [dm6]	G	T	1.767e^-4	0.642	INTERGENIC
3R	19030584	3R_19030584_SNP [dm3] 3R_23204862_SNP [dm6]	C	T	1.770e^-4	0.642	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2L	12416881	2L_12416881_SNP [dm3] 2L_12416881_SNP [dm6]	G	C	1.771e^-4	0.642	INTRON vir-1
X	11038540	X_11038540_SNP [dm3] X_11144507_SNP [dm6]	T	C	1.773e^-4	0.642	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12283764	X_12283764_SNP [dm3] X_12389731_SNP [dm6]	G	A	1.774e^-4	0.642	INTERGENIC
3L	4873509	3L_4873509_SNP [dm3] 3L_4873509_SNP [dm6]	A	T	1.782e^-4	0.642	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9041444	3L_9041444_SNP [dm3] 3L_9048344_SNP [dm6]	C	T	1.786e^-4	0.642	SYNONYMOUS_CODING CG5144 DOWNSTREAM Argk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20324093	3R_20324093_SNP [dm3] 3R_24498371_SNP [dm6]	G	A	1.790e^-4	0.642	INTERGENIC
2R	10686317	2R_10686317_SNP [dm3] 2R_14798812_SNP [dm6]	A	G	1.793e^-4	0.642	UTR_5_PRIME kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17791532	2L_17791532_SNP [dm3] 2L_17791532_SNP [dm6]	A	G	1.805e^-4	0.642	UPSTREAM CR43419 INTRON CadN2	TF binding site mE1_TFBS_sbb
3R	5979896	3R_5979896_SNP [dm3] 3R_10154174_SNP [dm6]	G	A	1.808e^-4	0.642	INTRON Invadolysin
2L	22126378	2L_22126378_INS [dm3] 2L_22126378_INS [dm6]	C	TGTCCATA	1.809e^-4	0.642	UTR_3_PRIME CycK & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12060631	2R_12060631_SNP [dm3] 2R_16173126_SNP [dm6]	G	T	1.811e^-4	0.642	NON_SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	19415074	2R_19415074_SNP [dm3] 2R_23527551_SNP [dm6]	C	T	1.813e^-4	0.642	SYNONYMOUS_CODING mi DOWNSTREAM bw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9487723	2R_9487723_SNP [dm3] 2R_13600218_SNP [dm6]	G	A	1.819e^-4	0.642	DOWNSTREAM CG43058 INTERGENIC
2L	14456100	2L_14456100_SNP [dm3] 2L_14456100_SNP [dm6]	T	C	1.820e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	14338370	3R_14338370_SNP [dm3] 3R_18512648_SNP [dm6]	G	C	1.820e^-4	0.642	INTRON fru
2R	10560855	2R_10560855_SNP [dm3] 2R_14673350_SNP [dm6]	C	T	1.821e^-4	0.642	INTRON mspo
3R	25950636	3R_25950636_SNP [dm3] 3R_30124914_SNP [dm6]	T	C	1.823e^-4	0.642	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5307811	3L_5307811_SNP [dm3] 3L_5314711_SNP [dm6]	C	T	1.824e^-4	0.642	INTERGENIC
2L	19896808	2L_19896808_SNP [dm3] 2L_19896808_SNP [dm6]	C	T	1.830e^-4	0.642	INTRON sick
3R	17229653	3R_17229653_SNP [dm3] 3R_21403931_SNP [dm6]	T	G	1.834e^-4	0.642	UTR_5_PRIME CG7907 INTRON CG7907
2R	20183461	2R_20183461_SNP [dm3] 2R_24295938_SNP [dm6]	C	A	1.835e^-4	0.642	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
4	1008099	4_1008099_SNP [dm3] 4_987473_SNP [dm6]	T	C	1.837e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3R	16295359	3R_16295359_INS [dm3] 3R_20469637_INS [dm6]	A	CACTT	1.841e^-4	0.642	INTRON Gfrl
2R	18631077	2R_18631077_DEL [dm3] 2R_22743572_DEL [dm6]	TT	T	1.849e^-4	0.642	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
4	529534	4_529534_SNP [dm3] 4_508908_SNP [dm6]	C	A	1.851e^-4	0.642	INTRON zfh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5917903	3L_5917903_SNP [dm3] 3L_5924803_SNP [dm6]	T	A	1.853e^-4	0.642	INTRON Vap-33B
2L	20238958	2L_20238958_SNP [dm3] 2L_20238958_SNP [dm6]	T	G	1.856e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13660817	3R_13660817_SNP [dm3] 3R_17835095_SNP [dm6]	A	T	1.861e^-4	0.642	INTRON tinc
3R	20699174	3R_20699174_SNP [dm3] 3R_24873452_SNP [dm6]	T	C	1.864e^-4	0.642	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
3R	19505027	3R_19505027_SNP [dm3] 3R_23679305_SNP [dm6]	A	G	1.868e^-4	0.642	UPSTREAM eIF-3p66 DOWNSTREAM CG13822 INTRON CG10157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9610573	2R_9610573_SNP [dm3] 2R_13723068_SNP [dm6]	C	A	1.870e^-4	0.642	INTRON fas
2R	8612766	2R_8612766_SNP [dm3] 2R_12725261_SNP [dm6]	C	G	1.871e^-4	0.642	INTRON CG42663
2R	4827223	2R_4827223_SNP [dm3] 2R_8939718_SNP [dm6]	C	T	1.874e^-4	0.642	SYNONYMOUS_CODING FANCI UPSTREAM CG13748
2R	10407427	2R_10407427_SNP [dm3] 2R_14519922_SNP [dm6]	T	A	1.875e^-4	0.642	INTERGENIC
3L	10671831	3L_10671831_SNP [dm3] 3L_10678731_SNP [dm6]	G	A	1.876e^-4	0.642	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20322090	2L_20322090_SNP [dm3] 2L_20322090_SNP [dm6]	A	G	1.877e^-4	0.642	INTRON spir	TF binding site mE1_TFBS_cad
4	1008073	4_1008073_SNP [dm3] 4_987447_SNP [dm6]	A	G	1.878e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs
3R	7029719	3R_7029719_SNP [dm3] 3R_11203997_SNP [dm6]	G	T	1.878e^-4	0.642	INTRON cu
X	13795429	X_13795429_INS [dm3] X_13901396_INS [dm6]	C	CA	1.880e^-4	0.642	INTRON mamo
X	18466980	X_18466980_SNP [dm3] X_18572947_SNP [dm6]	C	A	1.885e^-4	0.642	DOWNSTREAM Bx INTERGENIC
X	6263531	X_6263531_SNP [dm3] X_6369498_SNP [dm6]	T	C	1.885e^-4	0.642	INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19030560	3R_19030560_SNP [dm3] 3R_23204838_SNP [dm6]	T	G	1.885e^-4	0.642	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
4	802640	4_802640_SNP [dm3] 4_782014_SNP [dm6]	G	A	1.889e^-4	0.642	INTRON MED26	transposable element FlyBase
3L	6760604	3L_6760604_SNP [dm3] 3L_6767504_SNP [dm6]	C	T	1.890e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	20292803	2L_20292803_SNP [dm3] 2L_20292803_SNP [dm6]	A	C	1.903e^-4	0.642	INTERGENIC
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	1.908e^-4	0.642	INTRON CG30440
2R	9635629	2R_9635629_SNP [dm3] 2R_13748124_SNP [dm6]	C	T	1.916e^-4	0.642	UTR_3_PRIME fas
2R	10407374	2R_10407374_SNP [dm3] 2R_14519869_SNP [dm6]	G	T	1.919e^-4	0.642	INTERGENIC
3R	13559561	3R_13559561_SNP [dm3] 3R_17733839_SNP [dm6]	C	G	1.922e^-4	0.642	DOWNSTREAM Lgr1 INTRON CG14321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6563687	2R_6563687_SNP [dm3] 2R_10676182_SNP [dm6]	C	T	1.933e^-4	0.642	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11732032	3L_11732032_SNP [dm3] 3L_11738932_SNP [dm6]	C	A	1.935e^-4	0.642	INTRON CG6024	TF binding site mE1_TFBS_chinmo
3R	19505030	3R_19505030_SNP [dm3] 3R_23679308_SNP [dm6]	T	A	1.936e^-4	0.642	UPSTREAM eIF-3p66 DOWNSTREAM CG13822 INTRON CG10157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6093879	3L_6093879_SNP [dm3] 3L_6100779_SNP [dm6]	G	T	1.936e^-4	0.642	INTRON Ets65A
2R	10294897	2R_10294897_SNP [dm3] 2R_14407392_SNP [dm6]	A	G	1.939e^-4	0.642	INTERGENIC
2R	9775878	2R_9775878_SNP [dm3] 2R_13888373_SNP [dm6]	A	C	1.939e^-4	0.642	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
4	962757	4_962757_SNP [dm3] 4_942131_SNP [dm6]	G	A	1.953e^-4	0.642	INTRON mGluR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	8299645	2R_8299645_SNP [dm3] 2R_12412140_SNP [dm6]	A	G	1.953e^-4	0.642	DOWNSTREAM CG33627 INTERGENIC
X	11160091	X_11160091_SNP [dm3] X_11266058_SNP [dm6]	A	G	1.956e^-4	0.642	INTRON CG44422
3R	26472160	3R_26472160_SNP [dm3] 3R_30646438_SNP [dm6]	A	G	1.956e^-4	0.642	NON_SYNONYMOUS_CODING PH4alphaPV UPSTREAM CG31013	TF binding site mE1_TFBS_sens
3R	17248921	3R_17248921_SNP [dm3] 3R_21423199_SNP [dm6]	A	T	1.958e^-4	0.642	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	13174113	2L_13174113_SNP [dm3] 2L_13174113_SNP [dm6]	T	G	1.962e^-4	0.642	INTRON Sfmbt
3L	12649955	3L_12649955_SNP [dm3] 3L_12656855_SNP [dm6]	T	G	1.963e^-4	0.642	INTERGENIC
3L	5781185	3L_5781185_SNP [dm3] 3L_5788085_SNP [dm6]	T	A	1.965e^-4	0.642	INTERGENIC
X	16362211	X_16362211_SNP [dm3] X_16468178_SNP [dm6]	A	C	1.970e^-4	0.642	INTRON para	TF binding site mE1_TFBS_HSA
3R	11498649	3R_11498649_SNP [dm3] 3R_15672927_SNP [dm6]	T	G	1.978e^-4	0.642	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sbb
2L	10831505	2L_10831505_SNP [dm3] 2L_10831505_SNP [dm6]	G	A	1.978e^-4	0.642	SYNONYMOUS_CODING Nos	TF binding site mE1_TFBS_chinmo
3R	25826206	3R_25826206_SNP [dm3] 3R_30000484_SNP [dm6]	C	G	1.983e^-4	0.642	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	20901236	3R_20901236_SNP [dm3] 3R_25075514_SNP [dm6]	C	T	1.984e^-4	0.642	UPSTREAM CG9996 INTRON CG11920	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9334121	2R_9334121_SNP [dm3] 2R_13446616_SNP [dm6]	G	C	1.988e^-4	0.642	UPSTREAM CG30062 INTRON cnn
3L	6929195	3L_6929195_SNP [dm3] 3L_6936095_SNP [dm6]	G	C	1.988e^-4	0.642	UPSTREAM CR45414 & 1 other INTERGENIC
3R	16818550	3R_16818550_SNP [dm3] 3R_20992828_SNP [dm6]	G	C	1.993e^-4	0.642	SYNONYMOUS_CODING Calx	TF binding site mE1_TFBS_cad
X	18361274	X_18361274_SNP [dm3] X_18467241_SNP [dm6]	T	C	1.994e^-4	0.642	INTRON CG32547
2R	10631882	2R_10631882_SNP [dm3] 2R_14744377_SNP [dm6]	T	G	1.996e^-4	0.642	INTRON CG12858
2R	19450566	2R_19450566_SNP [dm3] 2R_23563043_SNP [dm6]	A	T	1.997e^-4	0.642	SYNONYMOUS_CODING Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10407422	2R_10407422_SNP [dm3] 2R_14519917_SNP [dm6]	A	C	1.998e^-4	0.642	INTERGENIC
3R	15978876	3R_15978876_SNP [dm3] 3R_20153154_SNP [dm6]	C	G	1.999e^-4	0.642	INTERGENIC
2R	11140627	2R_11140627_SNP [dm3] 2R_15253122_SNP [dm6]	G	T	2.009e^-4	0.642	INTRON scb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4249791	2R_4249791_SNP [dm3] 2R_8362286_SNP [dm6]	A	G	2.017e^-4	0.642	UPSTREAM hubl & 1 other DOWNSTREAM whip & 2 others INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8695218	2L_8695218_SNP [dm3] 2L_8695218_SNP [dm6]	G	A	2.018e^-4	0.642	INTRON Hnf4
3R	25155915	3R_25155915_SNP [dm3] 3R_29330193_SNP [dm6]	G	A	2.018e^-4	0.642	INTERGENIC
2R	19997659	2R_19997659_SNP [dm3] 2R_24110136_SNP [dm6]	G	A	2.020e^-4	0.642	INTRON CG4049
2R	19997660	2R_19997660_SNP [dm3] 2R_24110137_SNP [dm6]	T	C	2.020e^-4	0.642	INTRON CG4049
3L	7169913	3L_7169913_SNP [dm3] 3L_7176813_SNP [dm6]	T	A	2.024e^-4	0.642	INTRON Dscam2
2L	9853690	2L_9853690_SNP [dm3] 2L_9853690_SNP [dm6]	A	C	2.024e^-4	0.642	INTRON nAChRalpha6
X	20445766	X_20445766_INS [dm3] X_20574739_INS [dm6]	T	TTT	2.024e^-4	0.642	DOWNSTREAM CG42580 INTERGENIC
3L	13181136	3L_13181136_INS [dm3] 3L_13188036_INS [dm6]	T	TGTTT	2.028e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	9495377	2R_9495377_SNP [dm3] 2R_13607872_SNP [dm6]	A	T	2.028e^-4	0.642	DOWNSTREAM CG12464 INTERGENIC
2R	6155708	2R_6155708_SNP [dm3] 2R_10268203_SNP [dm6]	T	C	2.029e^-4	0.642	SYNONYMOUS_CODING CG12910 UPSTREAM CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3505732	2L_3505732_SNP [dm3] 2L_3505732_SNP [dm6]	C	G	2.030e^-4	0.642	INTRON tim	TF binding site BDTNP1_TFBS_twi
3L	18848651	3L_18848651_SNP [dm3] 3L_18855551_SNP [dm6]	G	A	2.035e^-4	0.642	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4006885	2R_4006885_SNP [dm3] 2R_8119380_SNP [dm6]	G	A	2.045e^-4	0.642	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
3R	13660919	3R_13660919_SNP [dm3] 3R_17835197_SNP [dm6]	G	T	2.046e^-4	0.642	INTRON tinc
3R	19117520	3R_19117520_SNP [dm3] 3R_23291798_SNP [dm6]	T	C	2.059e^-4	0.642	SYNONYMOUS_CODING pnt
3L	14565007	3L_14565007_SNP [dm3] 3L_14571907_SNP [dm6]	A	G	2.063e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13660865	3R_13660865_SNP [dm3] 3R_17835143_SNP [dm6]	A	G	2.084e^-4	0.642	INTRON tinc
3L	3682294	3L_3682294_SNP [dm3] 3L_3682294_SNP [dm6]	A	C	2.087e^-4	0.642	INTERGENIC
3R	9337801	3R_9337801_SNP [dm3] 3R_13512079_SNP [dm6]	G	C	2.087e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1343253	2R_1343253_INS [dm3] 2R_5455748_INS [dm6]	G	AC	2.087e^-4	0.642	UTR_3_PRIME laccase2
2L	19896822	2L_19896822_SNP [dm3] 2L_19896822_SNP [dm6]	G	C	2.093e^-4	0.642	INTRON sick
4	1008084	4_1008084_SNP [dm3] 4_987458_SNP [dm6]	A	G	2.096e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs
2L	10111931	2L_10111931_SNP [dm3] 2L_10111931_SNP [dm6]	C	A	2.096e^-4	0.642	INTRON CG44153 & 1 other
2R	15268200	2R_15268200_SNP [dm3] 2R_19380695_SNP [dm6]	C	A	2.097e^-4	0.642	UPSTREAM CG10073 DOWNSTREAM CG10062 INTRON CG10073
3L	19199086	3L_19199086_SNP [dm3] 3L_19205986_SNP [dm6]	A	T	2.103e^-4	0.642	INTRON fz2
2R	17681814	2R_17681814_DEL [dm3] 2R_21794309_DEL [dm6]	TT	T	2.106e^-4	0.642	INTERGENIC
2L	8652554	2L_8652554_SNP [dm3] 2L_8652554_SNP [dm6]	C	T	2.107e^-4	0.642	INTRON Sema-1a
3L	14325424	3L_14325424_SNP [dm3] 3L_14332324_SNP [dm6]	G	A	2.108e^-4	0.642	INTRON fz
3L	10293290	3L_10293290_SNP [dm3] 3L_10300190_SNP [dm6]	A	T	2.108e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8183255	X_8183255_SNP [dm3] X_8289222_SNP [dm6]	T	G	2.109e^-4	0.642	INTRON nAChRalpha3
2L	11269178	2L_11269178_SNP [dm3] 2L_11269178_SNP [dm6]	G	A	2.116e^-4	0.642	UPSTREAM cana & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13990957	3L_13990957_SNP [dm3] 3L_13997857_SNP [dm6]	A	C	2.118e^-4	0.642	UTR_3_PRIME CG17361 DOWNSTREAM CG17359
2L	7944013	2L_7944013_SNP [dm3] 2L_7944013_SNP [dm6]	T	C	2.120e^-4	0.642	INTRON Snoo
3R	21200083	3R_21200083_SNP [dm3] 3R_25374361_SNP [dm6]	A	G	2.129e^-4	0.642	INTRON Fur1
2R	10631880	2R_10631880_INS [dm3] 2R_14744375_INS [dm6]	T	TT	2.132e^-4	0.642	INTRON CG12858
3L	1752541	3L_1752541_SNP [dm3] 3L_1752541_SNP [dm6]	T	A	2.134e^-4	0.642	UTR_3_PRIME Cht2 DOWNSTREAM Cht2 & 1 other
2R	6760828	2R_6760828_SNP [dm3] 2R_10873323_SNP [dm6]	T	A	2.134e^-4	0.642	INTRON CG30015
X	5440136	X_5440136_SNP [dm3] X_5546103_SNP [dm6]	C	T	2.135e^-4	0.642	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	8565868	2L_8565868_SNP [dm3] 2L_8565868_SNP [dm6]	C	G	2.135e^-4	0.642	INTRON Sema-1a
3L	1683165	3L_1683165_SNP [dm3] 3L_1683165_SNP [dm6]	G	A	2.139e^-4	0.642	INTRON CG7991
3R	19580295	3R_19580295_SNP [dm3] 3R_23754573_SNP [dm6]	A	G	2.140e^-4	0.642	UTR_3_PRIME Rpt5 DOWNSTREAM Hrd3
X	14879019	X_14879019_SNP [dm3] X_14984986_SNP [dm6]	G	T	2.145e^-4	0.642	INTRON eag	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17213587	3L_17213587_SNP [dm3] 3L_17220487_SNP [dm6]	C	A	2.145e^-4	0.642	INTRON Rbp6
3R	8098585	3R_8098585_SNP [dm3] 3R_12272863_SNP [dm6]	G	T	2.145e^-4	0.642	UPSTREAM Sfp87B INTRON svp
3R	25247347	3R_25247347_SNP [dm3] 3R_29421625_SNP [dm6]	C	T	2.146e^-4	0.642	INTRON Ptp99A
2L	20223364	2L_20223364_SNP [dm3] 2L_20223364_SNP [dm6]	C	G	2.147e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14320429	3L_14320429_SNP [dm3] 3L_14327329_SNP [dm6]	C	A	2.147e^-4	0.642	INTRON fz
4	509697	4_509697_DEL [dm3] 4_489071_DEL [dm6]	TACAT	A	2.147e^-4	0.642	UPSTREAM Asator INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7460137	2L_7460137_SNP [dm3] 2L_7460137_SNP [dm6]	C	T	2.148e^-4	0.642	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	2.148e^-4	0.642	INTRON fas
3R	18523349	3R_18523349_SNP [dm3] 3R_22697627_SNP [dm6]	G	A	2.148e^-4	0.642	UPSTREAM Cyp6d4 INTRON cd
3R	17707067	3R_17707067_SNP [dm3] 3R_21881345_SNP [dm6]	G	T	2.151e^-4	0.642	SYNONYMOUS_CODING CG31465 DOWNSTREAM P5CDh2 EXON CR45046
2L	5642532	2L_5642532_SNP [dm3] 2L_5642532_SNP [dm6]	C	T	2.158e^-4	0.642	DOWNSTREAM mir-963 & 1 other INTRON CG31646
3R	2679991	3R_2679991_SNP [dm3] 3R_6854269_SNP [dm6]	C	A	2.159e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	14941292	2R_14941292_SNP [dm3] 2R_19053787_SNP [dm6]	G	A	2.159e^-4	0.642	INTERGENIC
2R	766364	2R_766364_SNP [dm3] 2R_4878859_SNP [dm6]	C	G	2.162e^-4	0.642	INTERGENIC
3L	17275323	3L_17275323_SNP [dm3] 3L_17282223_SNP [dm6]	C	A	2.164e^-4	0.642	INTERGENIC
2L	15173290	2L_15173290_SNP [dm3] 2L_15173290_SNP [dm6]	C	A	2.165e^-4	0.642	INTRON CG4168
2R	20320106	2R_20320106_SNP [dm3] 2R_24432583_SNP [dm6]	T	A	2.173e^-4	0.642	SYNONYMOUS_CODING Pgam5-2	TF binding site mE1_TFBS_chinmo
3L	14177225	3L_14177225_SNP [dm3] 3L_14184125_SNP [dm6]	C	G	2.175e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	904518	3L_904518_SNP [dm3] 3L_904518_SNP [dm6]	A	C	2.175e^-4	0.642	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17232678	X_17232678_SNP [dm3] X_17338645_SNP [dm6]	A	G	2.178e^-4	0.642	INTERGENIC
2R	8245721	2R_8245721_SNP [dm3] 2R_12358216_SNP [dm6]	T	A	2.183e^-4	0.642	INTRON CG30049
2R	3914487	2R_3914487_SNP [dm3] 2R_8026982_SNP [dm6]	T	C	2.185e^-4	0.642	DOWNSTREAM CR45267 INTERGENIC
3R	17662160	3R_17662160_SNP [dm3] 3R_21836438_SNP [dm6]	G	T	2.185e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10819101	3R_10819101_SNP [dm3] 3R_14993379_SNP [dm6]	T	C	2.192e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	10528417	3L_10528417_SNP [dm3] 3L_10535317_SNP [dm6]	T	G	2.198e^-4	0.642	INTRON A2bp1
2L	9853717	2L_9853717_SNP [dm3] 2L_9853717_SNP [dm6]	T	G	2.204e^-4	0.642	INTRON nAChRalpha6
2R	6601775	2R_6601775_SNP [dm3] 2R_10714270_SNP [dm6]	C	T	2.206e^-4	0.642	SYNONYMOUS_CODING stan
2R	16918828	2R_16918828_SNP [dm3] 2R_21031323_SNP [dm6]	T	C	2.208e^-4	0.642	INTERGENIC
2R	4956215	2R_4956215_SNP [dm3] 2R_9068710_SNP [dm6]	A	T	2.208e^-4	0.642	UPSTREAM ana INTRON ana
2L	19888191	2L_19888191_SNP [dm3] 2L_19888191_SNP [dm6]	C	A	2.212e^-4	0.642	INTRON sick	TF binding site mE1_TFBS_bab1
2L	975729	2L_975729_SNP [dm3] 2L_975729_SNP [dm6]	A	G	2.214e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	9360684	2L_9360684_SNP [dm3] 2L_9360684_SNP [dm6]	T	A	2.216e^-4	0.642	INTERGENIC
3L	2413299	3L_2413299_SNP [dm3] 3L_2413299_SNP [dm6]	G	C	2.220e^-4	0.642	UPSTREAM CG45186 INTRON CG45186
3R	19765065	3R_19765065_INS [dm3] 3R_23939343_INS [dm6]	T	TT	2.228e^-4	0.642	UPSTREAM Gdh INTRON Gdh
X	5703143	X_5703143_SNP [dm3] X_5809110_SNP [dm6]	A	T	2.231e^-4	0.642	INTRON Prosbeta2R1	TF binding site mE1_TFBS_chinmo
2R	9959744	2R_9959744_SNP [dm3] 2R_14072239_SNP [dm6]	A	T	2.235e^-4	0.642	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	15480438	2L_15480438_SNP [dm3] 2L_15480438_SNP [dm6]	A	G	2.236e^-4	0.642	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16084405	2R_16084405_SNP [dm3] 2R_20196900_SNP [dm6]	T	G	2.238e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20135326	2L_20135326_DEL [dm3] 2L_20135326_DEL [dm6]	TCTGCTT	T	2.246e^-4	0.642	UPSTREAM CG10651 INTERGENIC
4	1008096	4_1008096_INS [dm3] 4_987470_INS [dm6]	T	TGAAATTTCGCGTTCGCATC...	2.247e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2L	20142242	2L_20142242_SNP [dm3] 2L_20142242_SNP [dm6]	A	T	2.253e^-4	0.642	INTERGENIC
2R	19992097	2R_19992097_SNP [dm3] 2R_24104574_SNP [dm6]	G	A	2.255e^-4	0.642	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19909230	2L_19909230_SNP [dm3] 2L_19909230_SNP [dm6]	C	G	2.256e^-4	0.642	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo
3R	22832678	3R_22832678_SNP [dm3] 3R_27006956_SNP [dm6]	A	G	2.259e^-4	0.642	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
3L	19238997	3L_19238997_SNP [dm3] 3L_19245897_SNP [dm6]	T	C	2.259e^-4	0.642	INTERGENIC
3L	18409682	3L_18409682_SNP [dm3] 3L_18416582_SNP [dm6]	T	G	2.260e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
4	452559	4_452559_SNP [dm3] 4_431933_SNP [dm6]	T	C	2.261e^-4	0.642	DOWNSTREAM CR44024 INTERGENIC	transposable element FlyBase
2L	10825919	2L_10825919_SNP [dm3] 2L_10825919_SNP [dm6]	A	T	2.261e^-4	0.642	INTRON Nos
2R	19451886	2R_19451886_SNP [dm3] 2R_23564363_SNP [dm6]	T	C	2.266e^-4	0.642	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2996758	2L_2996758_SNP [dm3] 2L_2996758_SNP [dm6]	G	A	2.284e^-4	0.642	SYNONYMOUS_CODING CG3558
4	1008074	4_1008074_INS [dm3] 4_987448_INS [dm6]	G	GTCAAAACTGTCACGCCCAC...	2.284e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs
2R	11616130	2R_11616130_SNP [dm3] 2R_15728625_SNP [dm6]	T	C	2.286e^-4	0.642	INTRON CG30089
X	11042504	X_11042504_SNP [dm3] X_11148471_SNP [dm6]	T	A	2.294e^-4	0.642	UPSTREAM Lint-1 INTRON Ran	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14930431	3L_14930431_SNP [dm3] 3L_14937331_SNP [dm6]	G	T	2.295e^-4	0.642	INTRON DCX-EMAP
X	12236329	X_12236329_SNP [dm3] X_12342296_SNP [dm6]	T	A	2.297e^-4	0.642	INTERGENIC
2L	20322548	2L_20322548_SNP [dm3] 2L_20322548_SNP [dm6]	A	G	2.300e^-4	0.642	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7055287	3L_7055287_SNP [dm3] 3L_7062187_SNP [dm6]	A	G	2.302e^-4	0.642	INTRON CG8641
2R	11038945	2R_11038945_SNP [dm3] 2R_15151440_SNP [dm6]	A	G	2.311e^-4	0.642	INTERGENIC
3L	7178409	3L_7178409_SNP [dm3] 3L_7185309_SNP [dm6]	A	C	2.312e^-4	0.642	INTRON Dscam2
3R	8067244	3R_8067244_SNP [dm3] 3R_12241522_SNP [dm6]	C	T	2.313e^-4	0.642	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_inv
3L	5306804	3L_5306804_SNP [dm3] 3L_5313704_SNP [dm6]	T	C	2.318e^-4	0.642	INTERGENIC
2L	16997155	2L_16997155_SNP [dm3] 2L_16997155_SNP [dm6]	T	A	2.324e^-4	0.642	INTERGENIC
3R	11530021	3R_11530021_SNP [dm3] 3R_15704299_SNP [dm6]	T	C	2.331e^-4	0.642	UPSTREAM CG5404 INTERGENIC
2L	20300346	2L_20300346_SNP [dm3] 2L_20300346_SNP [dm6]	A	C	2.336e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25247318	3R_25247318_SNP [dm3] 3R_29421596_SNP [dm6]	T	C	2.342e^-4	0.642	INTRON Ptp99A
3R	24488141	3R_24488141_SNP [dm3] 3R_28662419_SNP [dm6]	G	T	2.353e^-4	0.642	INTERGENIC
2L	22222693	2L_22222693_SNP [dm3] 2L_22222693_SNP [dm6]	G	C	2.355e^-4	0.642	INTERGENIC	transposable element FlyBase
X	19641993	X_19641993_SNP [dm3] X_19747960_SNP [dm6]	C	T	2.365e^-4	0.642	UTR_3_PRIME parvin UPSTREAM Alr	TF binding site mE1_TFBS_cad
2R	9754848	2R_9754848_SNP [dm3] 2R_13867343_SNP [dm6]	T	A	2.369e^-4	0.642	INTRON shot
3R	13660897	3R_13660897_SNP [dm3] 3R_17835175_SNP [dm6]	A	T	2.370e^-4	0.642	INTRON tinc
2L	20290330	2L_20290330_SNP [dm3] 2L_20290330_SNP [dm6]	A	G	2.373e^-4	0.642	INTERGENIC
4	1231533	4_1231533_SNP [dm3] 4_1227807_SNP [dm6]	A	C	2.380e^-4	0.642	INTRON Dyrk3	transposable element FlyBase
2R	18463108	2R_18463108_SNP [dm3] 2R_22575603_SNP [dm6]	G	T	2.390e^-4	0.642	INTRON dnr1
3L	14982573	3L_14982573_SNP [dm3] 3L_14989473_SNP [dm6]	A	T	2.390e^-4	0.642	INTRON mnd	TF binding site BDTNP1_TFBS_da
2R	19968829	2R_19968829_SNP [dm3] 2R_24081306_SNP [dm6]	T	A	2.391e^-4	0.642	UTR_3_PRIME CG13564 UPSTREAM CG10339 & 1 other
X	12236324	X_12236324_INS [dm3] X_12342291_INS [dm6]	A	AAAAA	2.391e^-4	0.642	INTERGENIC
3R	1936359	3R_1936359_SNP [dm3] 3R_6110637_SNP [dm6]	A	T	2.393e^-4	0.642	DOWNSTREAM Obp83cd INTRON Obp83ef
3L	6928538	3L_6928538_SNP [dm3] 3L_6935438_SNP [dm6]	C	T	2.397e^-4	0.642	DOWNSTREAM CR45415 & 1 other INTERGENIC
2R	15174077	2R_15174077_SNP [dm3] 2R_19286572_SNP [dm6]	C	T	2.403e^-4	0.642	SYNONYMOUS_CODING CG10474	TF binding site mE1_TFBS_cad
4	955019	4_955019_SNP [dm3] 4_934393_SNP [dm6]	C	T	2.404e^-4	0.642	INTERGENIC	transposable element FlyBase
3R	17240103	3R_17240103_SNP [dm3] 3R_21414381_SNP [dm6]	C	T	2.406e^-4	0.642	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18553570	2R_18553570_SNP [dm3] 2R_22666065_SNP [dm6]	G	A	2.408e^-4	0.642	UTR_3_PRIME CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
3L	1392225	3L_1392225_SNP [dm3] 3L_1392225_SNP [dm6]	A	T	2.413e^-4	0.642	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20313896	2L_20313896_SNP [dm3] 2L_20313896_SNP [dm6]	C	A	2.416e^-4	0.642	INTRON spir
4	1008083	4_1008083_SNP [dm3] 4_987457_SNP [dm6]	G	C	2.417e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs
3L	8655620	3L_8655620_SNP [dm3] 3L_8662520_SNP [dm6]	G	T	2.421e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	984780	4_984780_SNP [dm3] 4_964154_SNP [dm6]	T	A	2.422e^-4	0.642	INTRON fuss	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3939899	2L_3939899_SNP [dm3] 2L_3939899_SNP [dm6]	C	A	2.425e^-4	0.642	INTRON fred
2R	17238601	2R_17238601_SNP [dm3] 2R_21351096_SNP [dm6]	C	A	2.426e^-4	0.642	UPSTREAM CG17974 INTERGENIC
4	950020	4_950020_SNP [dm3] 4_929394_SNP [dm6]	A	C	2.428e^-4	0.642	INTRON eIF4G
4	959421	4_959421_SNP [dm3] 4_938795_SNP [dm6]	A	T	2.429e^-4	0.642	SYNONYMOUS_CODING mGluR
2R	9334298	2R_9334298_SNP [dm3] 2R_13446793_SNP [dm6]	G	C	2.430e^-4	0.642	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	11082327	2L_11082327_SNP [dm3] 2L_11082327_SNP [dm6]	G	A	2.430e^-4	0.642	UPSTREAM AstC INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5360903	3L_5360903_SNP [dm3] 3L_5367803_SNP [dm6]	T	A	2.430e^-4	0.642	DOWNSTREAM Membrin INTRON CG10635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	21978139	2L_21978139_DEL [dm3] 2L_21978139_DEL [dm6]	CACTC	C	2.437e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11601160	3L_11601160_SNP [dm3] 3L_11608060_SNP [dm6]	A	C	2.444e^-4	0.642	SYNONYMOUS_CODING CG6091 UTR_5_PRIME CG6091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11296466	2R_11296466_SNP [dm3] 2R_15408961_SNP [dm6]	A	G	2.444e^-4	0.642	NON_SYNONYMOUS_CODING Mtk INTRON CG43729
X	18993114	X_18993114_SNP [dm3] X_19099081_SNP [dm6]	A	G	2.446e^-4	0.642	INTERGENIC
X	8427796	X_8427796_SNP [dm3] X_8533763_SNP [dm6]	A	C	2.448e^-4	0.642	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5773571	3L_5773571_SNP [dm3] 3L_5780471_SNP [dm6]	G	A	2.450e^-4	0.642	SYNONYMOUS_CODING Pmi UTR_5_PRIME PGRP-LD UPSTREAM Myt1 EXON CR45026	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13795391	X_13795391_SNP [dm3] X_13901358_SNP [dm6]	A	T	2.463e^-4	0.642	INTRON mamo
3R	10818710	3R_10818710_SNP [dm3] 3R_14992988_SNP [dm6]	A	T	2.463e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_Stat92E
3R	10818722	3R_10818722_SNP [dm3] 3R_14993000_SNP [dm6]	A	T	2.463e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_Stat92E
2L	3871976	2L_3871976_SNP [dm3] 2L_3871976_SNP [dm6]	A	G	2.473e^-4	0.642	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11957796	3L_11957796_SNP [dm3] 3L_11964696_SNP [dm6]	C	T	2.480e^-4	0.642	SYNONYMOUS_CODING prc
X	14879011	X_14879011_SNP [dm3] X_14984978_SNP [dm6]	G	C	2.483e^-4	0.642	INTRON eag	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11160046	X_11160046_SNP [dm3] X_11266013_SNP [dm6]	A	C	2.490e^-4	0.642	INTRON CG44422
2L	14574119	2L_14574119_SNP [dm3] 2L_14574119_SNP [dm6]	T	C	2.492e^-4	0.642	INTERGENIC
X	14878970	X_14878970_SNP [dm3] X_14984937_SNP [dm6]	C	T	2.496e^-4	0.642	INTRON eag	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17394270	3L_17394270_INS [dm3] 3L_17401170_INS [dm6]	G	GTG	2.504e^-4	0.642	FRAME_SHIFT noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24817419	3R_24817419_SNP [dm3] 3R_28991697_SNP [dm6]	A	G	2.505e^-4	0.642	INTERGENIC
2L	20508624	2L_20508624_SNP [dm3] 2L_20508624_SNP [dm6]	C	A	2.510e^-4	0.642	INTERGENIC
2R	16584128	2R_16584128_SNP [dm3] 2R_20696623_SNP [dm6]	G	T	2.513e^-4	0.642	INTERGENIC
3L	18423888	3L_18423888_SNP [dm3] 3L_18430788_SNP [dm6]	T	A	2.523e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9360702	2L_9360702_SNP [dm3] 2L_9360702_SNP [dm6]	G	A	2.523e^-4	0.642	INTERGENIC
X	15472007	X_15472007_SNP [dm3] X_15577974_SNP [dm6]	T	A	2.526e^-4	0.642	START_GAINED cerv UTR_5_PRIME cerv UPSTREAM CG7872	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	16295350	3R_16295350_SNP [dm3] 3R_20469628_SNP [dm6]	G	A	2.530e^-4	0.642	INTRON Gfrl
2L	2249914	2L_2249914_SNP [dm3] 2L_2249914_SNP [dm6]	T	G	2.531e^-4	0.642	DOWNSTREAM Ser12 INTERGENIC
X	20318587	X_20318587_SNP [dm3] X_20447560_SNP [dm6]	C	T	2.536e^-4	0.642	DOWNSTREAM CG42578 INTERGENIC
2L	19915451	2L_19915451_SNP [dm3] 2L_19915451_SNP [dm6]	A	T	2.537e^-4	0.642	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2679838	3R_2679838_SNP [dm3] 3R_6854116_SNP [dm6]	T	C	2.540e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	19580590	3R_19580590_SNP [dm3] 3R_23754868_SNP [dm6]	C	T	2.541e^-4	0.642	NON_SYNONYMOUS_CODING Hrd3 DOWNSTREAM Rpt5
3L	5521724	3L_5521724_SNP [dm3] 3L_5528624_SNP [dm6]	G	A	2.546e^-4	0.642	INTRON Lkr
3R	18982491	3R_18982491_SNP [dm3] 3R_23156769_SNP [dm6]	G	A	2.547e^-4	0.642	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3119009	2L_3119009_SNP [dm3] 2L_3119009_SNP [dm6]	G	A	2.547e^-4	0.642	INTRON toc
X	6651577	X_6651577_SNP [dm3] X_6757544_SNP [dm6]	C	A	2.552e^-4	0.642	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	14505242	3R_14505242_SNP [dm3] 3R_18679520_SNP [dm6]	G	A	2.559e^-4	0.642	SYNONYMOUS_CODING CG7706
3R	1866065	3R_1866065_INS [dm3] 3R_6040343_INS [dm6]	G	GT	2.562e^-4	0.642	INTERGENIC
3L	4873160	3L_4873160_SNP [dm3] 3L_4873160_SNP [dm6]	G	A	2.562e^-4	0.642	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15812834	X_15812834_SNP [dm3] X_15918801_SNP [dm6]	A	C	2.564e^-4	0.642	SYNONYMOUS_CODING CG8909
3R	19335184	3R_19335184_SNP [dm3] 3R_23509462_SNP [dm6]	C	T	2.571e^-4	0.642	INTERGENIC
3R	24812383	3R_24812383_SNP [dm3] 3R_28986661_SNP [dm6]	C	G	2.578e^-4	0.642	INTERGENIC
2R	6564198	2R_6564198_SNP [dm3] 2R_10676693_SNP [dm6]	C	T	2.581e^-4	0.642	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8098567	3R_8098567_SNP [dm3] 3R_12272845_SNP [dm6]	G	A	2.583e^-4	0.642	UPSTREAM Sfp87B INTRON svp
2R	4821923	2R_4821923_SNP [dm3] 2R_8934418_SNP [dm6]	C	T	2.583e^-4	0.642	UTR_3_PRIME CG13749 DOWNSTREAM FANCI
3R	25459149	3R_25459149_SNP [dm3] 3R_29633427_SNP [dm6]	G	C	2.592e^-4	0.642	INTRON Dop1R2
3R	27236086	3R_27236086_SNP [dm3] 3R_31410364_SNP [dm6]	A	T	2.595e^-4	0.642	UTR_5_PRIME Gprk2 INTRON Gprk2
3R	5978719	3R_5978719_SNP [dm3] 3R_10152997_SNP [dm6]	G	A	2.601e^-4	0.642	INTRON Invadolysin
4	1008089	4_1008089_INS [dm3] 4_987463_INS [dm6]	C	CCCAGA	2.602e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs
3L	7178392	3L_7178392_DEL [dm3] 3L_7185292_DEL [dm6]	TA	T	2.604e^-4	0.642	INTRON Dscam2
2R	4798626	2R_4798626_DEL [dm3] 2R_8911121_DEL [dm6]	AC	A	2.611e^-4	0.642	UTR_3_PRIME Pgi UPSTREAM CG8252 DOWNSTREAM CG30349	TF binding site mE1_TFBS_cad
3R	27697565	3R_27697565_SNP [dm3] 3R_31871843_SNP [dm6]	C	T	2.616e^-4	0.642	INTRON heph	TF binding site BDTNP1_TFBS_da
3R	27745495	3R_27745495_SNP [dm3] 3R_31919773_SNP [dm6]	C	T	2.616e^-4	0.642	INTRON heph
3R	27764031	3R_27764031_SNP [dm3] 3R_31938309_SNP [dm6]	C	G	2.616e^-4	0.642	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27792575	3R_27792575_SNP [dm3] 3R_31966853_SNP [dm6]	A	T	2.616e^-4	0.642	INTRON heph	TF binding site BDTNP1_TFBS_prd
2R	17667621	2R_17667621_SNP [dm3] 2R_21780116_SNP [dm6]	G	A	2.617e^-4	0.642	INTERGENIC
3R	20832371	3R_20832371_SNP [dm3] 3R_25006649_SNP [dm6]	C	T	2.627e^-4	0.642	INTRON tnc
3L	15842322	3L_15842322_SNP [dm3] 3L_15849222_SNP [dm6]	G	A	2.628e^-4	0.642	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_kn
3R	27691037	3R_27691037_SNP [dm3] 3R_31865315_SNP [dm6]	C	T	2.630e^-4	0.642	SYNONYMOUS_CODING heph
3R	10843937	3R_10843937_SNP [dm3] 3R_15018215_SNP [dm6]	C	T	2.637e^-4	0.642	INTERGENIC
2R	8249695	2R_8249695_SNP [dm3] 2R_12362190_SNP [dm6]	G	A	2.641e^-4	0.642	SYNONYMOUS_CODING CG30043
3R	17296717	3R_17296717_SNP [dm3] 3R_21470995_SNP [dm6]	C	T	2.641e^-4	0.642	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16584125	2R_16584125_SNP [dm3] 2R_20696620_SNP [dm6]	G	A	2.641e^-4	0.642	INTERGENIC
2R	8243827	2R_8243827_SNP [dm3] 2R_12356322_SNP [dm6]	T	C	2.647e^-4	0.642	DOWNSTREAM CG30047 INTRON CG30049	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	941612	4_941612_SNP [dm3] 4_920986_SNP [dm6]	G	T	2.650e^-4	0.642	NON_SYNONYMOUS_CODING eIF4G
2R	3849357	2R_3849357_SNP [dm3] 2R_7961852_SNP [dm6]	T	C	2.658e^-4	0.642	UTR_5_PRIME Sep5 UPSTREAM nito	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	9623798	2R_9623798_SNP [dm3] 2R_13736293_SNP [dm6]	C	G	2.662e^-4	0.642	INTRON fas
2L	20320329	2L_20320329_SNP [dm3] 2L_20320329_SNP [dm6]	G	A	2.668e^-4	0.642	INTRON spir
2L	22125219	2L_22125219_DEL [dm3] 2L_22125219_DEL [dm6]	ATATG	A	2.668e^-4	0.642	UTR_3_PRIME CycK & 1 other DOWNSTREAM CG3651	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7144205	3L_7144205_SNP [dm3] 3L_7151105_SNP [dm6]	T	C	2.669e^-4	0.642	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12313523	3L_12313523_SNP [dm3] 3L_12320423_SNP [dm6]	A	G	2.674e^-4	0.642	INTERGENIC
3R	7375413	3R_7375413_SNP [dm3] 3R_11549691_SNP [dm6]	T	A	2.675e^-4	0.642	INTERGENIC
4	997146	4_997146_SNP [dm3] 4_976520_SNP [dm6]	A	T	2.677e^-4	0.642	UPSTREAM sphinx & 1 other DOWNSTREAM sphinx INTRON fuss & 1 other	TF binding site BDTNP1_TFBS_dl
3R	24893196	3R_24893196_SNP [dm3] 3R_29067474_SNP [dm6]	G	A	2.680e^-4	0.642	INTRON CG11873	TF binding site BDTNP1_TFBS_dl
3L	10225019	3L_10225019_SNP [dm3] 3L_10231919_SNP [dm6]	T	G	2.682e^-4	0.642	INTERGENIC
3R	19030623	3R_19030623_SNP [dm3] 3R_23204901_SNP [dm6]	C	A	2.685e^-4	0.642	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	26649885	3R_26649885_SNP [dm3] 3R_30824163_SNP [dm6]	A	G	2.685e^-4	0.642	INTRON cindr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
4	1006448	4_1006448_SNP [dm3] 4_985822_SNP [dm6]	T	A	2.687e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	16818403	3R_16818403_SNP [dm3] 3R_20992681_SNP [dm6]	T	C	2.696e^-4	0.642	SYNONYMOUS_CODING Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25127538	3R_25127538_DEL [dm3] 3R_29301816_DEL [dm6]	TCTGTTTTCTGAATT...	T	2.708e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10454556	3L_10454556_SNP [dm3] 3L_10461456_SNP [dm6]	T	A	2.713e^-4	0.642	NON_SYNONYMOUS_CODING Gem3
3L	19176963	3L_19176963_SNP [dm3] 3L_19183863_SNP [dm6]	A	T	2.728e^-4	0.642	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20325958	2L_20325958_SNP [dm3] 2L_20325958_SNP [dm6]	G	T	2.738e^-4	0.642	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18523355	3R_18523355_SNP [dm3] 3R_22697633_SNP [dm6]	T	A	2.739e^-4	0.642	UPSTREAM Cyp6d4 INTRON cd
3R	17296727	3R_17296727_SNP [dm3] 3R_21471005_SNP [dm6]	C	A	2.744e^-4	0.642	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17296729	3R_17296729_SNP [dm3] 3R_21471007_SNP [dm6]	G	A	2.744e^-4	0.642	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16539107	3R_16539107_SNP [dm3] 3R_20713385_SNP [dm6]	C	G	2.747e^-4	0.642	UTR_5_PRIME Oamb
3R	12716140	3R_12716140_SNP [dm3] 3R_16890418_SNP [dm6]	T	C	2.749e^-4	0.642	INTRON iab-8	TF binding site mE1_TFBS_cad
2L	20318524	2L_20318524_INS [dm3] 2L_20318524_INS [dm6]	A	AT	2.754e^-4	0.642	UPSTREAM CR43606 INTRON spir
3L	12436383	3L_12436383_SNP [dm3] 3L_12443283_SNP [dm6]	C	T	2.762e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	904577	3L_904577_SNP [dm3] 3L_904577_SNP [dm6]	A	G	2.762e^-4	0.642	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7695203	2R_7695203_SNP [dm3] 2R_11807698_SNP [dm6]	G	A	2.762e^-4	0.642	INTRON ths
X	6651926	X_6651926_SNP [dm3] X_6757893_SNP [dm6]	C	T	2.766e^-4	0.642	DOWNSTREAM CR43496 INTRON CG14438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	8980824	2R_8980824_SNP [dm3] 2R_13093319_SNP [dm6]	C	T	2.767e^-4	0.642	INTERGENIC
2L	20290293	2L_20290293_SNP [dm3] 2L_20290293_SNP [dm6]	G	A	2.767e^-4	0.642	INTERGENIC
2L	4956888	2L_4956888_SNP [dm3] 2L_4956888_SNP [dm6]	C	T	2.770e^-4	0.642	SYNONYMOUS_CODING Marcal1
2R	6746057	2R_6746057_SNP [dm3] 2R_10858552_SNP [dm6]	G	T	2.772e^-4	0.642	INTRON CG30015
3R	10844057	3R_10844057_SNP [dm3] 3R_15018335_SNP [dm6]	T	G	2.774e^-4	0.642	INTERGENIC
3R	7019873	3R_7019873_SNP [dm3] 3R_11194151_SNP [dm6]	G	C	2.779e^-4	0.642	INTERGENIC
2L	12416818	2L_12416818_SNP [dm3] 2L_12416818_SNP [dm6]	T	G	2.782e^-4	0.642	INTRON vir-1
3R	24903056	3R_24903056_SNP [dm3] 3R_29077334_SNP [dm6]	C	T	2.791e^-4	0.642	INTRON CG11873
3R	16295210	3R_16295210_SNP [dm3] 3R_20469488_SNP [dm6]	A	T	2.793e^-4	0.642	INTRON Gfrl
X	8625744	X_8625744_SNP [dm3] X_8731711_SNP [dm6]	G	A	2.793e^-4	0.642	INTERGENIC
2L	12087428	2L_12087428_SNP [dm3] 2L_12087428_SNP [dm6]	T	C	2.794e^-4	0.642	EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	15813347	2R_15813347_SNP [dm3] 2R_19925842_SNP [dm6]	A	C	2.795e^-4	0.642	EXON CR44626	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	10501034	3R_10501034_SNP [dm3] 3R_14675312_SNP [dm6]	C	T	2.795e^-4	0.642	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	777715	4_777715_SNP [dm3] 4_757089_SNP [dm6]	A	T	2.797e^-4	0.642	INTRON bt
3R	19505042	3R_19505042_SNP [dm3] 3R_23679320_SNP [dm6]	A	T	2.797e^-4	0.642	UPSTREAM eIF-3p66 DOWNSTREAM CG13822 INTRON CG10157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22684925	3R_22684925_SNP [dm3] 3R_26859203_SNP [dm6]	G	T	2.798e^-4	0.642	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3L	6662556	3L_6662556_SNP [dm3] 3L_6669456_SNP [dm6]	A	G	2.809e^-4	0.642	INTERGENIC
3R	13989195	3R_13989195_SNP [dm3] 3R_18163473_SNP [dm6]	T	C	2.816e^-4	0.642	SYNONYMOUS_CODING CG7218	TF binding site mE1_TFBS_sens
3R	19578002	3R_19578002_SNP [dm3] 3R_23752280_SNP [dm6]	A	G	2.818e^-4	0.642	SYNONYMOUS_CODING RanBP3 UPSTREAM Rpt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7144191	3L_7144191_SNP [dm3] 3L_7151091_SNP [dm6]	T	A	2.819e^-4	0.642	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19891712	X_19891712_SNP [dm3] X_19997679_SNP [dm6]	T	A	2.822e^-4	0.642	INTERGENIC
2R	16584131	2R_16584131_SNP [dm3] 2R_20696626_SNP [dm6]	T	A	2.823e^-4	0.642	INTERGENIC
2R	16584135	2R_16584135_INS [dm3] 2R_20696630_INS [dm6]	T	TACTTAGCTGAACT...	2.823e^-4	0.642	INTERGENIC
3L	4869918	3L_4869918_SNP [dm3] 3L_4869918_SNP [dm6]	C	T	2.826e^-4	0.642	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	24234803	3R_24234803_SNP [dm3] 3R_28409081_SNP [dm6]	T	C	2.826e^-4	0.642	INTERGENIC
2L	3939894	2L_3939894_SNP [dm3] 2L_3939894_SNP [dm6]	A	T	2.827e^-4	0.642	INTRON fred
2L	19676569	2L_19676569_SNP [dm3] 2L_19676569_SNP [dm6]	T	G	2.828e^-4	0.642	INTRON Lar
2R	10620601	2R_10620601_SNP [dm3] 2R_14733096_SNP [dm6]	A	C	2.835e^-4	0.642	INTERGENIC
3L	14035013	3L_14035013_SNP [dm3] 3L_14041913_SNP [dm6]	T	C	2.836e^-4	0.642	INTRON Hsc70Cb
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	2.837e^-4	0.642	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2R	10633007	2R_10633007_SNP [dm3] 2R_14745502_SNP [dm6]	G	A	2.837e^-4	0.642	UPSTREAM Dro & 1 other INTERGENIC
3R	26301341	3R_26301341_SNP [dm3] 3R_30475619_SNP [dm6]	T	C	2.838e^-4	0.642	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	3939900	2L_3939900_SNP [dm3] 2L_3939900_SNP [dm6]	C	A	2.842e^-4	0.642	INTRON fred
3R	22295648	3R_22295648_SNP [dm3] 3R_26469926_SNP [dm6]	A	T	2.844e^-4	0.642	UTR_3_PRIME CG5455 DOWNSTREAM plum
2L	10922702	2L_10922702_SNP [dm3] 2L_10922702_SNP [dm6]	C	T	2.849e^-4	0.642	INTRON dpr2
X	7970522	X_7970522_SNP [dm3] X_8076489_SNP [dm6]	T	G	2.856e^-4	0.642	SYNONYMOUS_CODING CG1571	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14541567	3L_14541567_SNP [dm3] 3L_14548467_SNP [dm6]	A	G	2.859e^-4	0.642	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10471109	2R_10471109_SNP [dm3] 2R_14583604_SNP [dm6]	G	A	2.862e^-4	0.642	SYNONYMOUS_CODING ttv	TF binding site mE1_TFBS_cad
3R	13660816	3R_13660816_SNP [dm3] 3R_17835094_SNP [dm6]	A	T	2.863e^-4	0.642	INTRON tinc
4	948943	4_948943_SNP [dm3] 4_928317_SNP [dm6]	A	T	2.867e^-4	0.642	INTRON eIF4G
X	5397169	X_5397169_SNP [dm3] X_5503136_SNP [dm6]	C	T	2.873e^-4	0.642	DOWNSTREAM CG4151 INTERGENIC
3R	17220805	3R_17220805_SNP [dm3] 3R_21395083_SNP [dm6]	G	A	2.874e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	19148572	3R_19148572_SNP [dm3] 3R_23322850_SNP [dm6]	T	C	2.878e^-4	0.642	INTRON pnt
3L	17275347	3L_17275347_SNP [dm3] 3L_17282247_SNP [dm6]	T	C	2.880e^-4	0.642	INTERGENIC
2R	11140814	2R_11140814_SNP [dm3] 2R_15253309_SNP [dm6]	A	G	2.893e^-4	0.642	INTRON scb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11528714	3R_11528714_SNP [dm3] 3R_15702992_SNP [dm6]	C	T	2.898e^-4	0.642	INTERGENIC
2L	19676543	2L_19676543_SNP [dm3] 2L_19676543_SNP [dm6]	C	T	2.901e^-4	0.642	INTRON Lar
3L	5521552	3L_5521552_SNP [dm3] 3L_5528452_SNP [dm6]	C	G	2.903e^-4	0.642	INTRON Lkr
3R	27794322	3R_27794322_SNP [dm3] 3R_31968600_SNP [dm6]	G	C	2.903e^-4	0.642	INTRON heph
4	464446	4_464446_INS [dm3] 4_443820_INS [dm6]	G	GATTAG	2.903e^-4	0.642	UTR_5_PRIME lgs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4850168	2R_4850168_SNP [dm3] 2R_8962663_SNP [dm6]	A	G	2.905e^-4	0.642	UTR_3_PRIME babo DOWNSTREAM CG8216
2L	13627834	2L_13627834_SNP [dm3] 2L_13627834_SNP [dm6]	T	C	2.911e^-4	0.642	INTRON kuz
X	18468739	X_18468739_SNP [dm3] X_18574706_SNP [dm6]	C	T	2.915e^-4	0.642	INTERGENIC
2R	18561373	2R_18561373_SNP [dm3] 2R_22673868_SNP [dm6]	G	C	2.915e^-4	0.642	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC
3R	17788772	3R_17788772_SNP [dm3] 3R_21963050_SNP [dm6]	G	T	2.916e^-4	0.642	INTRON Eip93F
3L	17204290	3L_17204290_SNP [dm3] 3L_17211190_SNP [dm6]	A	T	2.918e^-4	0.642	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl
2R	7636042	2R_7636042_SNP [dm3] 2R_11748537_SNP [dm6]	T	G	2.919e^-4	0.642	INTERGENIC
3R	7021438	3R_7021438_SNP [dm3] 3R_11195716_SNP [dm6]	G	A	2.926e^-4	0.642	UPSTREAM CG18577 INTERGENIC
3L	17526987	3L_17526987_SNP [dm3] 3L_17533887_SNP [dm6]	T	C	2.929e^-4	0.642	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18787288	3L_18787288_SNP [dm3] 3L_18794188_SNP [dm6]	A	G	2.930e^-4	0.642	INTRON ftz-f1
2R	4693268	2R_4693268_SNP [dm3] 2R_8805763_SNP [dm6]	T	G	2.934e^-4	0.642	INTRON sns
2L	15384683	2L_15384683_SNP [dm3] 2L_15384683_SNP [dm6]	G	A	2.936e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
X	16786595	X_16786595_SNP [dm3] X_16892562_SNP [dm6]	A	T	2.936e^-4	0.642	INTERGENIC
2R	2466379	2R_2466379_INS [dm3] 2R_6578874_INS [dm6]	C	GAATGAA	2.939e^-4	0.642	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	11134364	3R_11134364_SNP [dm3] 3R_15308642_SNP [dm6]	A	G	2.941e^-4	0.642	UTR_3_PRIME Tm1 DOWNSTREAM Tm1
X	6781359	X_6781359_SNP [dm3] X_6887326_SNP [dm6]	G	T	2.941e^-4	0.642	INTERGENIC
2L	7537876	2L_7537876_SNP [dm3] 2L_7537876_SNP [dm6]	T	C	2.943e^-4	0.642	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17619934	2L_17619934_SNP [dm3] 2L_17619934_SNP [dm6]	A	T	2.945e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_inv
X	1339842	X_1339842_SNP [dm3] X_1445809_SNP [dm6]	C	T	2.946e^-4	0.642	NON_SYNONYMOUS_CODING futsch
3L	9033082	3L_9033082_SNP [dm3] 3L_9039982_SNP [dm6]	G	A	2.947e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	9609129	2R_9609129_SNP [dm3] 2R_13721624_SNP [dm6]	G	T	2.948e^-4	0.642	INTRON fas
3R	22268931	3R_22268931_SNP [dm3] 3R_26443209_SNP [dm6]	G	A	2.956e^-4	0.642	INTRON tx
3L	19237216	3L_19237216_SNP [dm3] 3L_19244116_SNP [dm6]	A	G	2.956e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_cad
X	10807354	X_10807354_SNP [dm3] X_10913321_SNP [dm6]	G	C	2.957e^-4	0.642	INTRON CG43901
3L	7728922	3L_7728922_SNP [dm3] 3L_7735822_SNP [dm6]	A	G	2.959e^-4	0.642	INTRON CG32373 & 1 other
4	972663	4_972663_SNP [dm3] 4_952037_SNP [dm6]	T	A	2.974e^-4	0.642	SYNONYMOUS_CODING 4E-T	TF binding site mE1_TFBS_cad
4	948848	4_948848_SNP [dm3] 4_928222_SNP [dm6]	G	T	2.995e^-4	0.642	INTRON eIF4G
2R	6601778	2R_6601778_SNP [dm3] 2R_10714273_SNP [dm6]	G	T	2.997e^-4	0.642	SYNONYMOUS_CODING stan
3R	13316533	3R_13316533_SNP [dm3] 3R_17490811_SNP [dm6]	T	G	3.006e^-4	0.642	INTRON Dscam3
3L	6100061	3L_6100061_SNP [dm3] 3L_6106961_SNP [dm6]	G	C	3.006e^-4	0.642	INTRON Ets65A	TF binding site mE1_TFBS_cad
4	539048	4_539048_SNP [dm3] 4_518422_SNP [dm6]	C	A	3.006e^-4	0.642	INTRON zfh2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1895365	3L_1895365_SNP [dm3] 3L_1895365_SNP [dm6]	A	G	3.008e^-4	0.642	INTRON CG1887
3L	1895370	3L_1895370_SNP [dm3] 3L_1895370_SNP [dm6]	A	G	3.008e^-4	0.642	INTRON CG1887
3L	1895375	3L_1895375_SNP [dm3] 3L_1895375_SNP [dm6]	T	A	3.008e^-4	0.642	INTRON CG1887
3L	1895376	3L_1895376_SNP [dm3] 3L_1895376_SNP [dm6]	G	A	3.008e^-4	0.642	INTRON CG1887
3L	1895402	3L_1895402_SNP [dm3] 3L_1895402_SNP [dm6]	G	A	3.008e^-4	0.642	INTRON CG1887
3L	11829745	3L_11829745_SNP [dm3] 3L_11836645_SNP [dm6]	T	C	3.011e^-4	0.642	SYNONYMOUS_CODING CG43064
3R	21829666	3R_21829666_SNP [dm3] 3R_26003944_SNP [dm6]	T	A	3.012e^-4	0.642	UPSTREAM CR45038 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19018915	2R_19018915_DEL [dm3] 2R_23131392_DEL [dm6]	GTACAAGTATTTAAAGCTGT...	G	3.015e^-4	0.642	INTERGENIC
2L	9265272	2L_9265272_SNP [dm3] 2L_9265272_SNP [dm6]	A	T	3.016e^-4	0.642	INTRON Ggamma30A
3R	10501035	3R_10501035_SNP [dm3] 3R_14675313_SNP [dm6]	A	G	3.016e^-4	0.642	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	1045262	4_1045262_SNP [dm3] 4_1024636_SNP [dm6]	A	T	3.016e^-4	0.642	INTRON PlexA	transposable element FlyBase
X	11840608	X_11840608_SNP [dm3] X_11946575_SNP [dm6]	A	C	3.023e^-4	0.642	INTRON cac
3L	2606289	3L_2606289_SNP [dm3] 3L_2606289_SNP [dm6]	A	C	3.039e^-4	0.642	INTRON Pxn
3R	16538986	3R_16538986_SNP [dm3] 3R_20713264_SNP [dm6]	C	A	3.042e^-4	0.642	INTRON Oamb
3L	2714778	3L_2714778_SNP [dm3] 3L_2714778_SNP [dm6]	T	C	3.043e^-4	0.642	INTERGENIC
3R	26969625	3R_26969625_SNP [dm3] 3R_31143903_SNP [dm6]	A	G	3.045e^-4	0.642	INTRON Gycbeta100B
2R	9601072	2R_9601072_SNP [dm3] 2R_13713567_SNP [dm6]	C	T	3.047e^-4	0.642	INTRON fas
3R	9365669	3R_9365669_SNP [dm3] 3R_13539947_SNP [dm6]	C	T	3.048e^-4	0.642	INTERGENIC
2L	7602901	2L_7602901_SNP [dm3] 2L_7602901_SNP [dm6]	A	G	3.052e^-4	0.642	INTERGENIC
2L	5679369	2L_5679369_DEL [dm3] 2L_5679369_DEL [dm6]	ACACA	A	3.052e^-4	0.642	UTR_3_PRIME CG12511 DOWNSTREAM CG12511
2L	10381351	2L_10381351_SNP [dm3] 2L_10381351_SNP [dm6]	T	C	3.058e^-4	0.642	UPSTREAM CG5096 INTRON gny
2R	16843019	2R_16843019_DEL [dm3] 2R_20955514_DEL [dm6]	GGGTGGTGGCGG...	G	3.059e^-4	0.642	INTRON hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8249704	2R_8249704_SNP [dm3] 2R_12362199_SNP [dm6]	A	G	3.062e^-4	0.642	SYNONYMOUS_CODING CG30043
3L	10289430	3L_10289430_SNP [dm3] 3L_10296330_SNP [dm6]	T	C	3.082e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
4	1000833	4_1000833_SNP [dm3] 4_980207_SNP [dm6]	T	G	3.083e^-4	0.642	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	6927575	3L_6927575_SNP [dm3] 3L_6934475_SNP [dm6]	T	A	3.085e^-4	0.642	INTRON CG14820
3L	1878981	3L_1878981_SNP [dm3] 3L_1878981_SNP [dm6]	C	T	3.091e^-4	0.642	INTRON CG13937
3L	9250726	3L_9250726_SNP [dm3] 3L_9257626_SNP [dm6]	T	A	3.095e^-4	0.642	INTRON GluRIB
3R	18016418	3R_18016418_SNP [dm3] 3R_22190696_SNP [dm6]	A	T	3.101e^-4	0.642	INTRON SKIP
3L	10552604	3L_10552604_SNP [dm3] 3L_10559504_SNP [dm6]	T	C	3.105e^-4	0.642	UPSTREAM CG6527 INTRON A2bp1
2L	20223530	2L_20223530_SNP [dm3] 2L_20223530_SNP [dm6]	T	C	3.109e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18561455	2R_18561455_SNP [dm3] 2R_22673950_SNP [dm6]	G	C	3.116e^-4	0.642	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
2L	3939907	2L_3939907_SNP [dm3] 2L_3939907_SNP [dm6]	G	T	3.118e^-4	0.642	INTRON fred
X	6652961	X_6652961_SNP [dm3] X_6758928_SNP [dm6]	T	C	3.122e^-4	0.642	UPSTREAM CG14438 INTRON CG14438 EXON CR43496	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sens
X	1335212	X_1335212_SNP [dm3] X_1441179_SNP [dm6]	A	G	3.124e^-4	0.642	NON_SYNONYMOUS_CODING futsch
2L	21977855	2L_21977855_SNP [dm3] 2L_21977855_SNP [dm6]	A	T	3.128e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18246625	3R_18246625_SNP [dm3] 3R_22420903_SNP [dm6]	G	T	3.131e^-4	0.642	UPSTREAM mats INTRON Nop56	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11265804	2L_11265804_SNP [dm3] 2L_11265804_SNP [dm6]	G	T	3.132e^-4	0.642	NON_SYNONYMOUS_CODING cmet	TF binding site mE1_TFBS_sens
4	1048011	4_1048011_SNP [dm3] 4_1027385_SNP [dm6]	T	A	3.145e^-4	0.642	UPSTREAM CR44031 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
X	21303440	X_21303440_SNP [dm3] X_21432413_SNP [dm6]	T	C	3.146e^-4	0.642	INTRON CG42343
4	951006	4_951006_SNP [dm3] 4_930380_SNP [dm6]	C	T	3.150e^-4	0.642	UTR_5_PRIME eIF4G INTRON eIF4G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	2710955	3L_2710955_SNP [dm3] 3L_2710955_SNP [dm6]	C	A	3.154e^-4	0.642	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26301342	3R_26301342_SNP [dm3] 3R_30475620_SNP [dm6]	A	C	3.157e^-4	0.642	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17670200	2L_17670200_SNP [dm3] 2L_17670200_SNP [dm6]	A	T	3.160e^-4	0.642	INTRON CadN
3L	9985488	3L_9985488_SNP [dm3] 3L_9992388_SNP [dm6]	C	A	3.160e^-4	0.642	INTRON dpr6
3R	26659702	3R_26659702_SNP [dm3] 3R_30833980_SNP [dm6]	C	T	3.161e^-4	0.642	INTRON CG15544
2L	13738483	2L_13738483_SNP [dm3] 2L_13738483_SNP [dm6]	C	T	3.161e^-4	0.642	INTERGENIC
2R	10407457	2R_10407457_SNP [dm3] 2R_14519952_SNP [dm6]	A	G	3.169e^-4	0.642	INTERGENIC
3L	2893528	3L_2893528_SNP [dm3] 3L_2893528_SNP [dm6]	A	C	3.182e^-4	0.642	INTERGENIC
3R	11529801	3R_11529801_SNP [dm3] 3R_15704079_SNP [dm6]	T	C	3.182e^-4	0.642	UPSTREAM CG5404 INTERGENIC
3L	10293278	3L_10293278_SNP [dm3] 3L_10300178_SNP [dm6]	A	T	3.183e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6374531	3L_6374531_SNP [dm3] 3L_6381431_SNP [dm6]	G	A	3.185e^-4	0.642	INTERGENIC
3L	19342184	3L_19342184_SNP [dm3] 3L_19349084_SNP [dm6]	C	T	3.197e^-4	0.642	INTRON CG32206
X	16140295	X_16140295_SNP [dm3] X_16246262_SNP [dm6]	A	T	3.197e^-4	0.642	INTERGENIC
3L	1895373	3L_1895373_SNP [dm3] 3L_1895373_SNP [dm6]	T	A	3.198e^-4	0.642	INTRON CG1887
X	10288281	X_10288281_SNP [dm3] X_10394248_SNP [dm6]	A	T	3.200e^-4	0.642	INTRON flw
2L	10825106	2L_10825106_SNP [dm3] 2L_10825106_SNP [dm6]	A	G	3.206e^-4	0.642	INTRON Nos
2L	11916990	2L_11916990_SNP [dm3] 2L_11916990_SNP [dm6]	A	G	3.207e^-4	0.642	INTRON Pde1c
2R	19997770	2R_19997770_SNP [dm3] 2R_24110247_SNP [dm6]	A	T	3.209e^-4	0.642	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18833891	3L_18833891_SNP [dm3] 3L_18840791_SNP [dm6]	G	C	3.210e^-4	0.642	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17619976	2L_17619976_SNP [dm3] 2L_17619976_SNP [dm6]	C	A	3.212e^-4	0.642	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2138939	3L_2138939_SNP [dm3] 3L_2138939_SNP [dm6]	C	G	3.215e^-4	0.642	INTRON zormin
2R	3791448	2R_3791448_SNP [dm3] 2R_7903943_SNP [dm6]	G	A	3.221e^-4	0.642	INTRON CG30377
3L	15842319	3L_15842319_SNP [dm3] 3L_15849219_SNP [dm6]	C	T	3.223e^-4	0.642	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_kn
X	11333260	X_11333260_SNP [dm3] X_11439227_SNP [dm6]	A	T	3.224e^-4	0.642	INTRON Evi5
2L	3491236	2L_3491236_SNP [dm3] 2L_3491236_SNP [dm6]	A	T	3.228e^-4	0.642	UPSTREAM CG15414 INTERGENIC
2L	16299763	2L_16299763_SNP [dm3] 2L_16299763_SNP [dm6]	C	A	3.237e^-4	0.642	UTR_5_PRIME heix UPSTREAM CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18830800	3L_18830800_SNP [dm3] 3L_18837700_SNP [dm6]	A	G	3.245e^-4	0.642	INTRON Indy
X	13012241	X_13012241_SNP [dm3] X_13118208_SNP [dm6]	T	A	3.246e^-4	0.642	INTRON CG42237
X	11038552	X_11038552_SNP [dm3] X_11144519_SNP [dm6]	T	C	3.246e^-4	0.642	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3024847	X_3024847_SNP [dm3] X_3130814_SNP [dm6]	T	G	3.248e^-4	0.642	SYNONYMOUS_CODING kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11151349	X_11151349_SNP [dm3] X_11257316_SNP [dm6]	A	T	3.252e^-4	0.642	INTRON CG44422
X	11151350	X_11151350_SNP [dm3] X_11257317_SNP [dm6]	T	G	3.252e^-4	0.642	INTRON CG44422
3R	16727415	3R_16727415_SNP [dm3] 3R_20901693_SNP [dm6]	T	G	3.255e^-4	0.642	UPSTREAM CG5621 INTERGENIC
2R	6264549	2R_6264549_SNP [dm3] 2R_10377044_SNP [dm6]	A	G	3.259e^-4	0.642	DOWNSTREAM Ir47a INTRON CG42732 EXON Ir47b	TF binding site mE1_TFBS_HSA
3L	17275338	3L_17275338_SNP [dm3] 3L_17282238_SNP [dm6]	C	G	3.261e^-4	0.642	INTERGENIC
3L	6660398	3L_6660398_SNP [dm3] 3L_6667298_SNP [dm6]	G	A	3.262e^-4	0.642	SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
2L	9853724	2L_9853724_SNP [dm3] 2L_9853724_SNP [dm6]	C	G	3.263e^-4	0.642	INTRON nAChRalpha6
3L	6374460	3L_6374460_SNP [dm3] 3L_6381360_SNP [dm6]	T	C	3.263e^-4	0.642	INTERGENIC
2R	18561440	2R_18561440_SNP [dm3] 2R_22673935_SNP [dm6]	C	A	3.270e^-4	0.642	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
X	5332889	X_5332889_SNP [dm3] X_5438856_SNP [dm6]	G	A	3.271e^-4	0.642	INTERGENIC
2R	15260027	2R_15260027_SNP [dm3] 2R_19372522_SNP [dm6]	T	C	3.274e^-4	0.642	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	1895347	3L_1895347_DEL [dm3] 3L_1895347_DEL [dm6]	GCTA	AT	3.275e^-4	0.642	INTRON CG1887
3L	1895353	3L_1895353_DEL [dm3] 3L_1895353_DEL [dm6]	GTTT	G	3.275e^-4	0.642	INTRON CG1887
3L	1895358	3L_1895358_SNP [dm3] 3L_1895358_SNP [dm6]	T	A	3.275e^-4	0.642	INTRON CG1887
3L	1895363	3L_1895363_SNP [dm3] 3L_1895363_SNP [dm6]	A	G	3.275e^-4	0.642	INTRON CG1887
2R	11649697	2R_11649697_SNP [dm3] 2R_15762192_SNP [dm6]	T	G	3.279e^-4	0.643	DOWNSTREAM CG30089 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	19716174	X_19716174_SNP [dm3] X_19822141_SNP [dm6]	A	G	3.289e^-4	0.643	INTERGENIC
2L	20243126	2L_20243126_SNP [dm3] 2L_20243126_SNP [dm6]	T	C	3.294e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20476583	2L_20476583_SNP [dm3] 2L_20476583_SNP [dm6]	A	T	3.295e^-4	0.643	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12060771	2R_12060771_SNP [dm3] 2R_16173266_SNP [dm6]	A	C	3.295e^-4	0.643	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3R	1941547	3R_1941547_INS [dm3] 3R_6115825_INS [dm6]	C	CT	3.300e^-4	0.643	INTERGENIC
2R	7636014	2R_7636014_INS [dm3] 2R_11748509_INS [dm6]	T	TTACT	3.304e^-4	0.644	INTERGENIC
4	974846	4_974846_SNP [dm3] 4_954220_SNP [dm6]	T	C	3.343e^-4	0.649	NON_SYNONYMOUS_CODING 4E-T
3R	20698930	3R_20698930_SNP [dm3] 3R_24873208_SNP [dm6]	C	T	3.349e^-4	0.649	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2L	12332767	2L_12332767_SNP [dm3] 2L_12332767_SNP [dm6]	C	T	3.351e^-4	0.649	INTERGENIC
2R	10407446	2R_10407446_SNP [dm3] 2R_14519941_SNP [dm6]	T	C	3.356e^-4	0.649	INTERGENIC
X	1333940	X_1333940_SNP [dm3] X_1439907_SNP [dm6]	T	C	3.357e^-4	0.649	NON_SYNONYMOUS_CODING futsch
3L	19226445	3L_19226445_SNP [dm3] 3L_19233345_SNP [dm6]	A	T	3.362e^-4	0.649	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7415029	3L_7415029_SNP [dm3] 3L_7421929_SNP [dm6]	G	T	3.364e^-4	0.649	INTERGENIC
X	11190874	X_11190874_SNP [dm3] X_11296841_SNP [dm6]	A	T	3.373e^-4	0.649	INTRON CG44422
3L	8070718	3L_8070718_SNP [dm3] 3L_8077618_SNP [dm6]	A	G	3.375e^-4	0.649	INTRON Ect4	TF binding site mE1_TFBS_Trl
2R	4894432	2R_4894432_SNP [dm3] 2R_9006927_SNP [dm6]	G	T	3.378e^-4	0.649	UPSTREAM Np DOWNSTREAM CG8172 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	21303533	X_21303533_SNP [dm3] X_21432506_SNP [dm6]	T	A	3.379e^-4	0.649	INTRON CG42343
3R	25185230	3R_25185230_DEL [dm3] 3R_29359508_DEL [dm6]	TTT	C	3.380e^-4	0.649	INTERGENIC
2R	10407424	2R_10407424_SNP [dm3] 2R_14519919_SNP [dm6]	T	C	3.385e^-4	0.649	INTERGENIC
2L	20301266	2L_20301266_SNP [dm3] 2L_20301266_SNP [dm6]	T	C	3.386e^-4	0.649	INTERGENIC
2L	11676258	2L_11676258_SNP [dm3] 2L_11676258_SNP [dm6]	A	G	3.388e^-4	0.649	INTERGENIC
2L	19676561	2L_19676561_SNP [dm3] 2L_19676561_SNP [dm6]	T	A	3.390e^-4	0.649	INTRON Lar
X	15446229	X_15446229_SNP [dm3] X_15552196_SNP [dm6]	T	A	3.394e^-4	0.649	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9440547	2L_9440547_SNP [dm3] 2L_9440547_SNP [dm6]	G	A	3.397e^-4	0.649	SYNONYMOUS_CODING CG33723 INTRON numb
3R	21698296	3R_21698296_SNP [dm3] 3R_25872574_SNP [dm6]	G	A	3.399e^-4	0.649	UTR_3_PRIME CG5890 DOWNSTREAM Tsp96F
3R	24488194	3R_24488194_SNP [dm3] 3R_28662472_SNP [dm6]	G	T	3.406e^-4	0.65	INTERGENIC
2L	10365933	2L_10365933_SNP [dm3] 2L_10365933_SNP [dm6]	C	T	3.417e^-4	0.65	SYNONYMOUS_CODING lft UPSTREAM CG5056	TF binding site BDTNP1_TFBS_dl
2R	2434431	2R_2434431_INS [dm3] 2R_6546926_INS [dm6]	T	TATGTATGTATAT...	3.421e^-4	0.65	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19832875	2R_19832875_SNP [dm3] 2R_23945352_SNP [dm6]	A	G	3.421e^-4	0.65	INTRON Galphas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6893009	X_6893009_SNP [dm3] X_6998976_SNP [dm6]	G	T	3.423e^-4	0.65	START_GAINED Inx2 UTR_5_PRIME Inx2 INTRON Inx7	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15427939	2R_15427939_SNP [dm3] 2R_19540434_SNP [dm6]	C	A	3.433e^-4	0.651	INTRON sm
2L	19903535	2L_19903535_SNP [dm3] 2L_19903535_SNP [dm6]	A	C	3.434e^-4	0.651	INTRON sick
2R	1343266	2R_1343266_SNP [dm3] 2R_5455761_SNP [dm6]	T	G	3.435e^-4	0.651	UTR_3_PRIME laccase2
4	511855	4_511855_SNP [dm3] 4_491229_SNP [dm6]	C	G	3.441e^-4	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18597376	2L_18597376_SNP [dm3] 2L_18597376_SNP [dm6]	G	C	3.447e^-4	0.652	UPSTREAM amos INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1262066	3L_1262066_SNP [dm3] 3L_1262066_SNP [dm6]	T	A	3.469e^-4	0.654	INTRON CG9134
3L	6926821	3L_6926821_SNP [dm3] 3L_6933721_SNP [dm6]	A	G	3.471e^-4	0.654	INTRON CG14820
3R	11106490	3R_11106490_SNP [dm3] 3R_15280768_SNP [dm6]	G	A	3.475e^-4	0.654	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	9985431	3L_9985431_SNP [dm3] 3L_9992331_SNP [dm6]	C	T	3.477e^-4	0.654	INTRON dpr6
3L	5782878	3L_5782878_SNP [dm3] 3L_5789778_SNP [dm6]	T	G	3.479e^-4	0.654	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16363268	X_16363268_SNP [dm3] X_16469235_SNP [dm6]	A	T	3.480e^-4	0.654	INTRON para
3L	2680581	3L_2680581_SNP [dm3] 3L_2680581_SNP [dm6]	A	G	3.490e^-4	0.655	INTRON Fife
3R	16057311	3R_16057311_INS [dm3] 3R_20231589_INS [dm6]	A	AATACA	3.495e^-4	0.655	INTRON Nlg4

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.915e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07615

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.1764	0.0229

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2397 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19030449	3R_19030449_INS [dm3] 3R_23204727_INS [dm6]	G	GTT	1.773e^-7	0.332	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	8.262e^-7	0.584	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2R	19982478	2R_19982478_SNP [dm3] 2R_24094955_SNP [dm6]	C	A	1.015e^-6	0.584	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19972748	2R_19972748_SNP [dm3] 2R_24085225_SNP [dm6]	G	A	1.246e^-6	0.584	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	1.584e^-6	0.594	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19030560	3R_19030560_SNP [dm3] 3R_23204838_SNP [dm6]	T	G	2.291e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	19030580	3R_19030580_INS [dm3] 3R_23204858_INS [dm6]	A	AT	2.498e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	19030611	3R_19030611_SNP [dm3] 3R_23204889_SNP [dm6]	T	C	3.733e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	19982493	2R_19982493_SNP [dm3] 2R_24094970_SNP [dm6]	T	C	4.164e^-6	0.601	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3987713	3L_3987713_SNP [dm3] 3L_3987713_SNP [dm6]	C	T	4.370e^-6	0.601	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21030752	3R_21030752_SNP [dm3] 3R_25205030_SNP [dm6]	A	T	5.307e^-6	0.601	INTRON CG13654 & 1 other
2L	20343221	2L_20343221_SNP [dm3] 2L_20343221_SNP [dm6]	A	T	5.354e^-6	0.601	INTRON spir
3R	19030584	3R_19030584_SNP [dm3] 3R_23204862_SNP [dm6]	C	T	5.512e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	19996423	2R_19996423_SNP [dm3] 2R_24108900_SNP [dm6]	G	T	5.846e^-6	0.601	SYNONYMOUS_CODING CG4049
2R	19975004	2R_19975004_SNP [dm3] 2R_24087481_SNP [dm6]	G	C	5.899e^-6	0.601	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6452220	X_6452220_SNP [dm3] X_6558187_SNP [dm6]	T	C	6.025e^-6	0.601	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	7392805	2R_7392805_SNP [dm3] 2R_11505300_SNP [dm6]	T	A	6.968e^-6	0.601	INTRON inv
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	7.062e^-6	0.601	INTRON CG17150
3L	15171675	3L_15171675_SNP [dm3] 3L_15178575_SNP [dm6]	G	A	7.219e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4871845	3L_4871845_SNP [dm3] 3L_4871845_SNP [dm6]	G	A	7.322e^-6	0.601	INTRON CG17150	TF binding site mE1_TFBS_HSA
X	18245824	X_18245824_INS [dm3] X_18351791_INS [dm6]	C	AGA	7.470e^-6	0.601	INTRON CG6123
3L	4871873	3L_4871873_DEL [dm3] 3L_4871873_DEL [dm6]	TC	T	7.673e^-6	0.601	INTRON CG17150	TF binding site mE1_TFBS_HSA
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	8.956e^-6	0.601	DOWNSTREAM CG9928 INTERGENIC
3R	4723832	3R_4723832_DEL [dm3] 3R_8898110_DEL [dm6]	TCTGCAAATCACAAT...	T	9.794e^-6	0.601	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	19030577	3R_19030577_SNP [dm3] 3R_23204855_SNP [dm6]	A	C	9.799e^-6	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	18972435	2R_18972435_SNP [dm3] 2R_23084912_SNP [dm6]	T	A	1.092e^-5	0.601	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19974129	2R_19974129_SNP [dm3] 2R_24086606_SNP [dm6]	G	T	1.108e^-5	0.601	UTR_5_PRIME snama DOWNSTREAM CG16786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974764	2R_19974764_SNP [dm3] 2R_24087241_SNP [dm6]	T	C	1.108e^-5	0.601	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17032067	3L_17032067_SNP [dm3] 3L_17038967_SNP [dm6]	T	C	1.117e^-5	0.601	INTRON scaf6	TF binding site mE1_TFBS_cad
3R	10371209	3R_10371209_SNP [dm3] 3R_14545487_SNP [dm6]	T	A	1.121e^-5	0.601	INTRON Pde6
3L	4871912	3L_4871912_SNP [dm3] 3L_4871912_SNP [dm6]	A	G	1.160e^-5	0.601	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	11515362	3R_11515362_SNP [dm3] 3R_15689640_SNP [dm6]	C	T	1.160e^-5	0.601	UTR_3_PRIME pxb
X	18245828	X_18245828_SNP [dm3] X_18351795_SNP [dm6]	T	C	1.178e^-5	0.601	INTRON CG6123
3R	21030790	3R_21030790_SNP [dm3] 3R_25205068_SNP [dm6]	G	A	1.286e^-5	0.601	INTRON CG13654 & 1 other
2R	19984116	2R_19984116_SNP [dm3] 2R_24096593_SNP [dm6]	G	T	1.295e^-5	0.601	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6307933	3L_6307933_SNP [dm3] 3L_6314833_SNP [dm6]	T	A	1.300e^-5	0.601	INTERGENIC
2L	20437146	2L_20437146_SNP [dm3] 2L_20437146_SNP [dm6]	G	A	1.398e^-5	0.601	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14338370	3R_14338370_SNP [dm3] 3R_18512648_SNP [dm6]	G	C	1.408e^-5	0.601	INTRON fru
3R	19030436	3R_19030436_SNP [dm3] 3R_23204714_SNP [dm6]	T	C	1.451e^-5	0.601	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
X	9858685	X_9858685_SNP [dm3] X_9964652_SNP [dm6]	C	T	1.626e^-5	0.601	SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
2R	18670641	2R_18670641_DEL [dm3] 2R_22783136_DEL [dm6]	AAG	A	1.689e^-5	0.601	INTRON CG42260
2L	4956395	2L_4956395_SNP [dm3] 2L_4956395_SNP [dm6]	A	G	1.707e^-5	0.601	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4880296	3L_4880296_SNP [dm3] 3L_4880296_SNP [dm6]	T	C	1.741e^-5	0.601	INTRON CG17150
3R	10156929	3R_10156929_SNP [dm3] 3R_14331207_SNP [dm6]	C	T	1.834e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156930	3R_10156930_SNP [dm3] 3R_14331208_SNP [dm6]	C	A	1.834e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13169991	3R_13169991_SNP [dm3] 3R_17344269_SNP [dm6]	G	A	1.870e^-5	0.601	INTRON beat-IIa
3L	11839461	3L_11839461_SNP [dm3] 3L_11846361_SNP [dm6]	C	G	1.880e^-5	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	10156944	3R_10156944_SNP [dm3] 3R_14331222_SNP [dm6]	G	C	1.990e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10454556	3L_10454556_SNP [dm3] 3L_10461456_SNP [dm6]	T	A	2.146e^-5	0.601	NON_SYNONYMOUS_CODING Gem3
2L	20268713	2L_20268713_SNP [dm3] 2L_20268713_SNP [dm6]	T	C	2.148e^-5	0.601	INTERGENIC
2L	20132606	2L_20132606_SNP [dm3] 2L_20132606_SNP [dm6]	C	A	2.152e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11487768	3R_11487768_SNP [dm3] 3R_15662046_SNP [dm6]	T	G	2.179e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	10156910	3R_10156910_INS [dm3] 3R_14331188_INS [dm6]	T	TGTAT	2.180e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4956360	2L_4956360_SNP [dm3] 2L_4956360_SNP [dm6]	C	T	2.190e^-5	0.601	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4956397	2L_4956397_DEL [dm3] 2L_4956397_DEL [dm6]	CAT	C	2.194e^-5	0.601	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15858356	2R_15858356_SNP [dm3] 2R_19970851_SNP [dm6]	C	A	2.203e^-5	0.601	INTERGENIC
2L	15386524	2L_15386524_SNP [dm3] 2L_15386524_SNP [dm6]	C	G	2.248e^-5	0.601	INTERGENIC
3R	10156937	3R_10156937_SNP [dm3] 3R_14331215_SNP [dm6]	G	A	2.257e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10697615	3R_10697615_SNP [dm3] 3R_14871893_SNP [dm6]	A	T	2.350e^-5	0.601	INTRON btsz
2R	19976766	2R_19976766_SNP [dm3] 2R_24089243_SNP [dm6]	A	G	2.353e^-5	0.601	NON_SYNONYMOUS_CODING snama
3L	7629777	3L_7629777_SNP [dm3] 3L_7636677_SNP [dm6]	C	G	2.402e^-5	0.601	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	2.447e^-5	0.601	SYNONYMOUS_CODING CG16798
3L	7629324	3L_7629324_SNP [dm3] 3L_7636224_SNP [dm6]	G	C	2.503e^-5	0.601	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20350998	2L_20350998_SNP [dm3] 2L_20350998_SNP [dm6]	C	A	2.536e^-5	0.601	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
2R	12633600	2R_12633600_SNP [dm3] 2R_16746095_SNP [dm6]	G	T	2.562e^-5	0.601	UPSTREAM Sfp53D INTRON CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10156932	3R_10156932_INS [dm3] 3R_14331210_INS [dm6]	G	GTAT	2.580e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20138957	2R_20138957_SNP [dm3] 2R_24251434_SNP [dm6]	A	C	2.605e^-5	0.601	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3L	10739474	3L_10739474_SNP [dm3] 3L_10746374_SNP [dm6]	A	T	2.605e^-5	0.601	INTERGENIC
3R	8099075	3R_8099075_SNP [dm3] 3R_12273353_SNP [dm6]	T	A	2.654e^-5	0.601	SYNONYMOUS_CODING Sfp87B INTRON svp
3R	10156939	3R_10156939_INS [dm3] 3R_14331217_INS [dm6]	A	ATGTACATATATCATTTTTT...	2.660e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156950	3R_10156950_SNP [dm3] 3R_14331228_SNP [dm6]	G	C	2.660e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156952	3R_10156952_INS [dm3] 3R_14331230_INS [dm6]	G	GATTAAAT	2.660e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4006930	2R_4006930_SNP [dm3] 2R_8119425_SNP [dm6]	T	C	2.688e^-5	0.601	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
3R	12396346	3R_12396346_SNP [dm3] 3R_16570624_SNP [dm6]	C	A	2.711e^-5	0.601	UTR_3_PRIME CG42342 UPSTREAM CG14891 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	22307250	2L_22307250_SNP [dm3] 2L_22307250_SNP [dm6]	T	G	2.712e^-5	0.601	INTERGENIC
2R	17927618	2R_17927618_DEL [dm3] 2R_22040113_DEL [dm6]	GACAGC	G	2.718e^-5	0.601	UPSTREAM CG34370 INTERGENIC
2R	7392807	2R_7392807_INS [dm3] 2R_11505302_INS [dm6]	T	TT	2.726e^-5	0.601	INTRON inv
3L	7630115	3L_7630115_SNP [dm3] 3L_7637015_SNP [dm6]	A	T	2.742e^-5	0.601	SYNONYMOUS_CODING CG33275
3R	18945930	3R_18945930_SNP [dm3] 3R_23120208_SNP [dm6]	C	T	2.742e^-5	0.601	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13263711	2L_13263711_SNP [dm3] 2L_13263711_SNP [dm6]	C	T	2.756e^-5	0.601	INTRON CG44085
3R	10156948	3R_10156948_SNP [dm3] 3R_14331226_SNP [dm6]	C	T	2.770e^-5	0.601	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20139544	2R_20139544_SNP [dm3] 2R_24252021_SNP [dm6]	A	C	2.815e^-5	0.601	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	11529801	3R_11529801_SNP [dm3] 3R_15704079_SNP [dm6]	T	C	2.830e^-5	0.601	UPSTREAM CG5404 INTERGENIC
3L	11897267	3L_11897267_SNP [dm3] 3L_11904167_SNP [dm6]	G	T	2.846e^-5	0.601	INTRON CG44837
3R	11508626	3R_11508626_SNP [dm3] 3R_15682904_SNP [dm6]	C	T	2.853e^-5	0.601	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	620938	3R_620938_DEL [dm3] 3R_4795216_DEL [dm6]	TT	T	2.878e^-5	0.601	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4723105	3R_4723105_SNP [dm3] 3R_8897383_SNP [dm6]	T	A	2.878e^-5	0.601	INTRON pyd
3R	26042222	3R_26042222_SNP [dm3] 3R_30216500_SNP [dm6]	T	C	2.898e^-5	0.601	UTR_5_PRIME CecC
2R	18670862	2R_18670862_SNP [dm3] 2R_22783357_SNP [dm6]	C	A	2.944e^-5	0.601	UPSTREAM CG30270 INTRON CG42260
2R	19984341	2R_19984341_SNP [dm3] 2R_24096818_SNP [dm6]	C	T	2.952e^-5	0.601	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3643803	X_3643803_SNP [dm3] X_3749770_SNP [dm6]	T	C	2.969e^-5	0.601	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13142029	2L_13142029_SNP [dm3] 2L_13142029_SNP [dm6]	T	C	2.978e^-5	0.601	DOWNSTREAM CG9928 INTERGENIC
3R	620935	3R_620935_SNP [dm3] 3R_4795213_SNP [dm6]	A	C	3.102e^-5	0.601	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20699174	3R_20699174_SNP [dm3] 3R_24873452_SNP [dm6]	T	C	3.116e^-5	0.601	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2R	12460216	2R_12460216_INS [dm3] 2R_16572711_INS [dm6]	A	AA	3.150e^-5	0.601	INTRON CG4927
2L	20403587	2L_20403587_SNP [dm3] 2L_20403587_SNP [dm6]	G	T	3.172e^-5	0.601	INTRON CG10947
2R	18972454	2R_18972454_SNP [dm3] 2R_23084931_SNP [dm6]	G	A	3.200e^-5	0.601	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	620936	3R_620936_SNP [dm3] 3R_4795214_SNP [dm6]	G	A	3.244e^-5	0.601	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19023588	3R_19023588_INS [dm3] 3R_23197866_INS [dm6]	T	TCTACGGTTCTACGG...	3.303e^-5	0.601	INTRON cnc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25531759	3R_25531759_SNP [dm3] 3R_29706037_SNP [dm6]	T	A	3.323e^-5	0.601	INTERGENIC
3R	24978494	3R_24978494_SNP [dm3] 3R_29152772_SNP [dm6]	G	A	3.329e^-5	0.601	SYNONYMOUS_CODING Slbp UPSTREAM ligatin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	9858684	X_9858684_SNP [dm3] X_9964651_SNP [dm6]	C	T	3.368e^-5	0.601	NON_SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
3L	4871887	3L_4871887_SNP [dm3] 3L_4871887_SNP [dm6]	T	C	3.408e^-5	0.601	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	6857972	3R_6857972_SNP [dm3] 3R_11032250_SNP [dm6]	A	G	3.431e^-5	0.601	INTRON CG34114
2R	18126974	2R_18126974_SNP [dm3] 2R_22239469_SNP [dm6]	G	A	3.443e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18246157	X_18246157_SNP [dm3] X_18352124_SNP [dm6]	A	T	3.451e^-5	0.601	INTRON CG6123
3L	12313523	3L_12313523_SNP [dm3] 3L_12320423_SNP [dm6]	A	G	3.504e^-5	0.601	INTERGENIC
2R	4006830	2R_4006830_SNP [dm3] 2R_8119325_SNP [dm6]	G	A	3.539e^-5	0.601	SPLICE_SITE_REGION Asap SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
2R	7204750	2R_7204750_SNP [dm3] 2R_11317245_SNP [dm6]	T	C	3.568e^-5	0.601	INTRON nompA
2R	4583549	2R_4583549_SNP [dm3] 2R_8696044_SNP [dm6]	A	G	3.570e^-5	0.601	UPSTREAM CG8738 & 1 other INTRON CG8586
2R	18972461	2R_18972461_SNP [dm3] 2R_23084938_SNP [dm6]	A	G	3.578e^-5	0.601	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23997363	3R_23997363_SNP [dm3] 3R_28171641_SNP [dm6]	G	T	3.587e^-5	0.601	INTRON CG34354
3R	11529809	3R_11529809_SNP [dm3] 3R_15704087_SNP [dm6]	C	T	3.651e^-5	0.604	UPSTREAM CG5404 INTERGENIC
2R	7693480	2R_7693480_SNP [dm3] 2R_11805975_SNP [dm6]	C	A	3.670e^-5	0.604	INTRON ths
3L	7769852	3L_7769852_SNP [dm3] 3L_7776752_SNP [dm6]	A	G	3.810e^-5	0.608	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	10156955	3R_10156955_SNP [dm3] 3R_14331233_SNP [dm6]	G	A	3.815e^-5	0.608	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	3.817e^-5	0.608	INTRON rk
3L	1935439	3L_1935439_SNP [dm3] 3L_1935439_SNP [dm6]	G	A	3.824e^-5	0.608	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_sens
2R	14322783	2R_14322783_SNP [dm3] 2R_18435278_SNP [dm6]	G	T	3.944e^-5	0.611	INTRON CG30118	TF binding site BDTNP1_TFBS_twi
3R	25727333	3R_25727333_SNP [dm3] 3R_29901611_SNP [dm6]	T	C	4.037e^-5	0.611	INTRON CG31038
2R	7693521	2R_7693521_DEL [dm3] 2R_11806016_DEL [dm6]	CA	C	4.073e^-5	0.611	INTRON ths
3R	10156938	3R_10156938_SNP [dm3] 3R_14331216_SNP [dm6]	A	C	4.074e^-5	0.611	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6856604	3R_6856604_SNP [dm3] 3R_11030882_SNP [dm6]	T	A	4.100e^-5	0.611	INTRON CG34114
2L	20437153	2L_20437153_SNP [dm3] 2L_20437153_SNP [dm6]	C	G	4.113e^-5	0.611	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12633477	2R_12633477_SNP [dm3] 2R_16745972_SNP [dm6]	G	A	4.123e^-5	0.611	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4871832	3L_4871832_SNP [dm3] 3L_4871832_SNP [dm6]	T	G	4.132e^-5	0.611	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	17769455	3R_17769455_SNP [dm3] 3R_21943733_SNP [dm6]	A	C	4.137e^-5	0.611	INTERGENIC
X	1532940	X_1532940_SNP [dm3] X_1638907_SNP [dm6]	C	T	4.222e^-5	0.619	INTRON Mur2B & 1 other
3R	19030623	3R_19030623_SNP [dm3] 3R_23204901_SNP [dm6]	C	A	4.266e^-5	0.62	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	11487767	3R_11487767_SNP [dm3] 3R_15662045_SNP [dm6]	C	A	4.371e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	569471	3L_569471_SNP [dm3] 3L_569471_SNP [dm6]	G	A	4.404e^-5	0.63	INTRON hipk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3702945	3L_3702945_SNP [dm3] 3L_3702945_SNP [dm6]	C	T	4.433e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7693525	2R_7693525_SNP [dm3] 2R_11806020_SNP [dm6]	A	G	4.528e^-5	0.638	INTRON ths
3R	19030437	3R_19030437_SNP [dm3] 3R_23204715_SNP [dm6]	C	T	4.609e^-5	0.645	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	13913071	3R_13913071_SNP [dm3] 3R_18087349_SNP [dm6]	A	G	4.685e^-5	0.649	INTERGENIC
X	9858647	X_9858647_SNP [dm3] X_9964614_SNP [dm6]	T	A	4.737e^-5	0.649	UPSTREAM CG1889 INTRON CG1791
2R	19976832	2R_19976832_SNP [dm3] 2R_24089309_SNP [dm6]	G	A	4.767e^-5	0.649	UTR_3_PRIME snama INTRON snama
3L	16339657	3L_16339657_SNP [dm3] 3L_16346557_SNP [dm6]	A	T	4.814e^-5	0.649	INTRON CG33257
2L	18936854	2L_18936854_DEL [dm3] 2L_18936854_DEL [dm6]	CC	C	4.908e^-5	0.649	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	22181142	X_22181142_SNP [dm3] X_22779306_SNP [dm6]	T	C	4.991e^-5	0.649	INTRON CR44997	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19983960	2R_19983960_SNP [dm3] 2R_24096437_SNP [dm6]	G	A	5.039e^-5	0.649	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20135767	2L_20135767_SNP [dm3] 2L_20135767_SNP [dm6]	C	G	5.144e^-5	0.649	UPSTREAM CG10651 INTERGENIC
X	19787022	X_19787022_SNP [dm3] X_19892989_SNP [dm6]	A	C	5.145e^-5	0.649	UPSTREAM Hers INTRON Hers
2R	7219832	2R_7219832_SNP [dm3] 2R_11332327_SNP [dm6]	G	T	5.165e^-5	0.649	SYNONYMOUS_CODING sha
2R	14686962	2R_14686962_SNP [dm3] 2R_18799457_SNP [dm6]	G	C	5.341e^-5	0.649	INTRON l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18409682	3L_18409682_SNP [dm3] 3L_18416582_SNP [dm6]	T	G	5.372e^-5	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10156943	3R_10156943_SNP [dm3] 3R_14331221_SNP [dm6]	C	A	5.395e^-5	0.649	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19675839	2R_19675839_SNP [dm3] 2R_23788316_SNP [dm6]	C	A	5.396e^-5	0.649	INTRON CG9850
3L	14372680	3L_14372680_SNP [dm3] 3L_14379580_SNP [dm6]	T	C	5.474e^-5	0.649	INTERGENIC
2L	20341184	2L_20341184_DEL [dm3] 2L_20341184_DEL [dm6]	CAACTGGC	C	5.514e^-5	0.649	UPSTREAM spir INTRON spir
2R	12060631	2R_12060631_SNP [dm3] 2R_16173126_SNP [dm6]	G	T	5.537e^-5	0.649	NON_SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
3R	11529074	3R_11529074_SNP [dm3] 3R_15703352_SNP [dm6]	A	C	5.574e^-5	0.649	INTERGENIC
2L	19647533	2L_19647533_DEL [dm3] 2L_19647533_DEL [dm6]	TAT	T	5.591e^-5	0.649	INTRON Lar
X	18240946	X_18240946_SNP [dm3] X_18346913_SNP [dm6]	T	A	5.594e^-5	0.649	INTRON CG6123
2R	7392814	2R_7392814_SNP [dm3] 2R_11505309_SNP [dm6]	C	T	5.640e^-5	0.649	INTRON inv
3L	12313620	3L_12313620_INS [dm3] 3L_12320520_INS [dm6]	T	TTAA	5.746e^-5	0.649	INTERGENIC
3L	12313622	3L_12313622_SNP [dm3] 3L_12320522_SNP [dm6]	T	A	5.746e^-5	0.649	INTERGENIC
3R	13906882	3R_13906882_SNP [dm3] 3R_18081160_SNP [dm6]	C	T	5.789e^-5	0.649	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15920020	3R_15920020_SNP [dm3] 3R_20094298_SNP [dm6]	A	G	5.897e^-5	0.649	INTERGENIC
3R	10156946	3R_10156946_SNP [dm3] 3R_14331224_SNP [dm6]	T	A	5.907e^-5	0.649	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16900000	2R_16900000_SNP [dm3] 2R_21012495_SNP [dm6]	C	T	5.911e^-5	0.649	NON_SYNONYMOUS_CODING CG9346 UPSTREAM grau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24931932	3R_24931932_SNP [dm3] 3R_29106210_SNP [dm6]	T	G	5.917e^-5	0.649	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22171534	3L_22171534_DEL [dm3] 3L_22178434_DEL [dm6]	GTT	G	5.976e^-5	0.649	INTRON olf413
2R	19500357	2R_19500357_SNP [dm3] 2R_23612834_SNP [dm6]	G	A	5.978e^-5	0.649	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	6694333	3L_6694333_SNP [dm3] 3L_6701233_SNP [dm6]	T	C	6.044e^-5	0.649	INTRON SP1173
2L	20126742	2L_20126742_INS [dm3] 2L_20126742_INS [dm6]	A	AA	6.072e^-5	0.649	INTERGENIC
2L	20262953	2L_20262953_SNP [dm3] 2L_20262953_SNP [dm6]	T	A	6.124e^-5	0.649	DOWNSTREAM CG17570 INTERGENIC
2R	9793047	2R_9793047_SNP [dm3] 2R_13905542_SNP [dm6]	C	A	6.174e^-5	0.649	INTRON shot
X	12331677	X_12331677_SNP [dm3] X_12437644_SNP [dm6]	A	T	6.190e^-5	0.649	INTRON Pkcdelta
3L	7769793	3L_7769793_SNP [dm3] 3L_7776693_SNP [dm6]	G	T	6.247e^-5	0.649	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3L	12830610	3L_12830610_SNP [dm3] 3L_12837510_SNP [dm6]	A	T	6.268e^-5	0.649	INTRON CG10960
3R	6849559	3R_6849559_SNP [dm3] 3R_11023837_SNP [dm6]	T	C	6.341e^-5	0.649	INTRON CG34114
3L	16201577	3L_16201577_SNP [dm3] 3L_16208477_SNP [dm6]	A	G	6.363e^-5	0.649	INTERGENIC
X	9240805	X_9240805_SNP [dm3] X_9346772_SNP [dm6]	C	G	6.382e^-5	0.649	INTRON CG34449
2L	20067542	2L_20067542_SNP [dm3] 2L_20067542_SNP [dm6]	G	A	6.406e^-5	0.649	INTRON bwa	TF binding site BDTNP1_TFBS_da
2R	16900141	2R_16900141_SNP [dm3] 2R_21012636_SNP [dm6]	T	G	6.409e^-5	0.649	UPSTREAM grau INTRON CG9346	TF binding site mE1_TFBS_sens
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	6.424e^-5	0.649	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	4266130	2R_4266130_DEL [dm3] 2R_8378625_DEL [dm6]	TGTAGT	AAATA	6.505e^-5	0.649	INTRON pdm3
3L	2564275	3L_2564275_SNP [dm3] 3L_2564275_SNP [dm6]	T	C	6.517e^-5	0.649	INTRON msn
2R	18647639	2R_18647639_SNP [dm3] 2R_22760134_SNP [dm6]	G	T	6.539e^-5	0.649	SYNONYMOUS_CODING CG42260 INTRON CG42260	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20141079	2L_20141079_SNP [dm3] 2L_20141079_SNP [dm6]	T	A	6.562e^-5	0.649	INTERGENIC
2L	16599739	2L_16599739_SNP [dm3] 2L_16599739_SNP [dm6]	A	C	6.568e^-5	0.649	INTRON CG42389
2R	20138094	2R_20138094_SNP [dm3] 2R_24250571_SNP [dm6]	T	G	6.611e^-5	0.649	NON_SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
3R	11529941	3R_11529941_SNP [dm3] 3R_15704219_SNP [dm6]	T	A	6.617e^-5	0.649	UPSTREAM CG5404 INTERGENIC
3R	13805628	3R_13805628_SNP [dm3] 3R_17979906_SNP [dm6]	C	T	6.661e^-5	0.649	INTRON cpo
3R	26999182	3R_26999182_SNP [dm3] 3R_31173460_SNP [dm6]	G	T	6.718e^-5	0.649	INTRON Gycbeta100B
3R	26999183	3R_26999183_SNP [dm3] 3R_31173461_SNP [dm6]	G	A	6.718e^-5	0.649	INTRON Gycbeta100B
3L	8201579	3L_8201579_SNP [dm3] 3L_8208479_SNP [dm6]	C	T	6.738e^-5	0.649	INTERGENIC
3R	26805775	3R_26805775_SNP [dm3] 3R_30980053_SNP [dm6]	G	A	6.739e^-5	0.649	INTRON 5-HT7
2L	16321573	2L_16321573_SNP [dm3] 2L_16321573_SNP [dm6]	G	A	6.739e^-5	0.649	INTRON cact	TF binding site BDTNP1_TFBS_dl
3L	3350287	3L_3350287_SNP [dm3] 3L_3350287_SNP [dm6]	C	T	6.816e^-5	0.649	SYNONYMOUS_CODING kst INTRON kst	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11839688	3L_11839688_SNP [dm3] 3L_11846588_SNP [dm6]	G	A	6.882e^-5	0.649	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	4871889	3L_4871889_SNP [dm3] 3L_4871889_SNP [dm6]	T	C	6.889e^-5	0.649	INTRON CG17150	TF binding site mE1_TFBS_HSA
2L	14757111	2L_14757111_SNP [dm3] 2L_14757111_SNP [dm6]	T	C	6.983e^-5	0.649	INTERGENIC
X	18241652	X_18241652_SNP [dm3] X_18347619_SNP [dm6]	A	T	7.024e^-5	0.649	INTRON CG6123
2L	20379286	2L_20379286_SNP [dm3] 2L_20379286_SNP [dm6]	G	T	7.044e^-5	0.649	NON_SYNONYMOUS_CODING CG16798
2L	14757112	2L_14757112_SNP [dm3] 2L_14757112_SNP [dm6]	G	A	7.088e^-5	0.649	INTERGENIC
3L	5917903	3L_5917903_SNP [dm3] 3L_5924803_SNP [dm6]	T	A	7.098e^-5	0.649	INTRON Vap-33B
X	14375818	X_14375818_SNP [dm3] X_14481785_SNP [dm6]	G	A	7.152e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4007007	2R_4007007_SNP [dm3] 2R_8119502_SNP [dm6]	G	T	7.158e^-5	0.649	INTRON Asap	TF binding site mE1_TFBS_cad
X	18241689	X_18241689_SNP [dm3] X_18347656_SNP [dm6]	G	A	7.190e^-5	0.649	INTRON CG6123
3L	14540543	3L_14540543_SNP [dm3] 3L_14547443_SNP [dm6]	C	G	7.236e^-5	0.649	SYNONYMOUS_CODING CG9238 UTR_5_PRIME CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10496188	3R_10496188_SNP [dm3] 3R_14670466_SNP [dm6]	C	T	7.367e^-5	0.649	INTRON Meltrin	TF binding site mE1_TFBS_cad
2L	20289085	2L_20289085_SNP [dm3] 2L_20289085_SNP [dm6]	G	A	7.379e^-5	0.649	INTERGENIC
3R	9866450	3R_9866450_DEL [dm3] 3R_14040728_DEL [dm6]	TATGTATGAA	CCAGAACGC	7.633e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6874385	3L_6874385_SNP [dm3] 3L_6881285_SNP [dm6]	T	C	7.678e^-5	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	5361216	3L_5361216_SNP [dm3] 3L_5368116_SNP [dm6]	T	C	7.695e^-5	0.649	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
2L	20243884	2L_20243884_SNP [dm3] 2L_20243884_SNP [dm6]	C	G	7.711e^-5	0.649	INTERGENIC
X	22180824	X_22180824_SNP [dm3] X_22778988_SNP [dm6]	A	T	7.719e^-5	0.649	INTRON CR44997	TF binding site BDTNP1_TFBS_twi
3R	3790477	3R_3790477_SNP [dm3] 3R_7964755_SNP [dm6]	G	A	7.751e^-5	0.649	INTRON dsx
3R	3790480	3R_3790480_SNP [dm3] 3R_7964758_SNP [dm6]	G	A	7.751e^-5	0.649	INTRON dsx
3L	12822093	3L_12822093_SNP [dm3] 3L_12828993_SNP [dm6]	T	C	7.828e^-5	0.649	INTRON CG10960
2R	14153993	2R_14153993_SNP [dm3] 2R_18266488_SNP [dm6]	G	C	7.925e^-5	0.649	INTERGENIC
3R	25531736	3R_25531736_SNP [dm3] 3R_29706014_SNP [dm6]	A	T	7.932e^-5	0.649	INTERGENIC
X	20837544	X_20837544_SNP [dm3] X_20966517_SNP [dm6]	G	T	8.046e^-5	0.649	INTERGENIC
X	19971292	X_19971292_SNP [dm3] X_20077259_SNP [dm6]	G	A	8.068e^-5	0.649	INTERGENIC
2R	15940968	2R_15940968_SNP [dm3] 2R_20053463_SNP [dm6]	C	T	8.098e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	18246124	X_18246124_SNP [dm3] X_18352091_SNP [dm6]	G	A	8.205e^-5	0.649	INTRON CG6123
3R	11529070	3R_11529070_SNP [dm3] 3R_15703348_SNP [dm6]	T	G	8.214e^-5	0.649	INTERGENIC
3R	18211568	3R_18211568_SNP [dm3] 3R_22385846_SNP [dm6]	A	G	8.217e^-5	0.649	NON_SYNONYMOUS_CODING CG43343 DOWNSTREAM CG5379	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13142031	2L_13142031_SNP [dm3] 2L_13142031_SNP [dm6]	C	T	8.230e^-5	0.649	DOWNSTREAM CG9928 INTERGENIC
3L	3702859	3L_3702859_SNP [dm3] 3L_3702859_SNP [dm6]	T	A	8.237e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7098124	3L_7098124_SNP [dm3] 3L_7105024_SNP [dm6]	G	A	8.291e^-5	0.649	INTRON form3
X	15812834	X_15812834_SNP [dm3] X_15918801_SNP [dm6]	A	C	8.391e^-5	0.649	SYNONYMOUS_CODING CG8909
3R	18991853	3R_18991853_SNP [dm3] 3R_23166131_SNP [dm6]	A	C	8.405e^-5	0.649	INTERGENIC
3R	19010724	3R_19010724_SNP [dm3] 3R_23185002_SNP [dm6]	G	T	8.433e^-5	0.649	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4917685	X_4917685_DEL [dm3] X_5023652_DEL [dm6]	AA	A	8.493e^-5	0.649	INTRON CR44833	regulatory region REDfly_CRMs
3R	18500190	3R_18500190_SNP [dm3] 3R_22674468_SNP [dm6]	G	A	8.529e^-5	0.649	SYNONYMOUS_CODING CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	11529901	3R_11529901_SNP [dm3] 3R_15704179_SNP [dm6]	G	A	8.548e^-5	0.649	UPSTREAM CG5404 INTERGENIC
3R	11530448	3R_11530448_SNP [dm3] 3R_15704726_SNP [dm6]	A	C	8.555e^-5	0.649	UTR_5_PRIME CG5404
2L	3391042	2L_3391042_SNP [dm3] 2L_3391042_SNP [dm6]	G	A	8.572e^-5	0.649	INTERGENIC
X	22180950	X_22180950_SNP [dm3] X_22779114_SNP [dm6]	A	G	8.661e^-5	0.649	INTRON CR44997	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11430010	2L_11430010_DEL [dm3] 2L_11430010_DEL [dm6]	TATAATCAT	T	8.672e^-5	0.649	INTERGENIC
2L	11430025	2L_11430025_SNP [dm3] 2L_11430025_SNP [dm6]	A	C	8.672e^-5	0.649	INTERGENIC
3L	3866234	3L_3866234_SNP [dm3] 3L_3866234_SNP [dm6]	G	T	8.679e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9858672	X_9858672_SNP [dm3] X_9964639_SNP [dm6]	T	C	8.707e^-5	0.649	UPSTREAM CG1889 INTRON CG1791
2R	19917770	2R_19917770_SNP [dm3] 2R_24030247_SNP [dm6]	C	T	8.752e^-5	0.649	SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	9858739	X_9858739_SNP [dm3] X_9964706_SNP [dm6]	C	A	8.754e^-5	0.649	NON_SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
3R	11534122	3R_11534122_SNP [dm3] 3R_15708400_SNP [dm6]	A	G	8.812e^-5	0.649	UTR_3_PRIME CG5404
2R	15824896	2R_15824896_SNP [dm3] 2R_19937391_SNP [dm6]	C	T	8.812e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21110850	2L_21110850_SNP [dm3] 2L_21110850_SNP [dm6]	G	A	8.833e^-5	0.649	INTRON Nhe2
3L	18413166	3L_18413166_SNP [dm3] 3L_18420066_SNP [dm6]	T	A	8.884e^-5	0.649	INTERGENIC
X	3888668	X_3888668_SNP [dm3] X_3994635_SNP [dm6]	C	T	8.891e^-5	0.649	INTERGENIC
2L	4955814	2L_4955814_SNP [dm3] 2L_4955814_SNP [dm6]	A	T	8.897e^-5	0.649	NON_SYNONYMOUS_CODING Marcal1 UPSTREAM Jon25Bi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	20628682	2L_20628682_SNP [dm3] 2L_20628682_SNP [dm6]	G	T	8.898e^-5	0.649	INTERGENIC
3R	11530154	3R_11530154_SNP [dm3] 3R_15704432_SNP [dm6]	G	C	8.906e^-5	0.649	UPSTREAM CG5404 INTERGENIC
2R	5020785	2R_5020785_SNP [dm3] 2R_9133280_SNP [dm6]	C	T	8.908e^-5	0.649	NON_SYNONYMOUS_CODING Hydr1 UPSTREAM Hydr1 INTRON Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3R	27245123	3R_27245123_SNP [dm3] 3R_31419401_SNP [dm6]	C	G	8.947e^-5	0.649	INTRON Gprk2
2R	19676387	2R_19676387_SNP [dm3] 2R_23788864_SNP [dm6]	G	A	8.972e^-5	0.649	INTRON CG9850	TF binding site mE1_TFBS_HSA
X	8029126	X_8029126_SNP [dm3] X_8135093_SNP [dm6]	G	C	9.011e^-5	0.649	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
2L	19635301	2L_19635301_INS [dm3] 2L_19635301_INS [dm6]	T	TAT	9.013e^-5	0.649	INTRON Lar
X	7226272	X_7226272_SNP [dm3] X_7332239_SNP [dm6]	T	C	9.022e^-5	0.649	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
X	3643779	X_3643779_SNP [dm3] X_3749746_SNP [dm6]	T	C	9.065e^-5	0.649	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11529959	3R_11529959_SNP [dm3] 3R_15704237_SNP [dm6]	C	T	9.072e^-5	0.649	UPSTREAM CG5404 INTERGENIC
3R	1984080	3R_1984080_SNP [dm3] 3R_6158358_SNP [dm6]	G	T	9.079e^-5	0.649	INTERGENIC
3R	11529940	3R_11529940_SNP [dm3] 3R_15704218_SNP [dm6]	T	A	9.087e^-5	0.649	UPSTREAM CG5404 INTERGENIC
3R	10792401	3R_10792401_SNP [dm3] 3R_14966679_SNP [dm6]	G	A	9.110e^-5	0.649	INTERGENIC
2L	20264644	2L_20264644_INS [dm3] 2L_20264644_INS [dm6]	T	TGTTGGAATATACTATTCAA...	9.126e^-5	0.649	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20552741	2L_20552741_SNP [dm3] 2L_20552741_SNP [dm6]	C	T	9.132e^-5	0.649	INTERGENIC
3R	10496438	3R_10496438_SNP [dm3] 3R_14670716_SNP [dm6]	G	A	9.150e^-5	0.649	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
2R	7635267	2R_7635267_SNP [dm3] 2R_11747762_SNP [dm6]	C	T	9.172e^-5	0.649	INTERGENIC
X	3662236	X_3662236_SNP [dm3] X_3768203_SNP [dm6]	G	T	9.237e^-5	0.649	INTRON tlk
3R	11508246	3R_11508246_SNP [dm3] 3R_15682524_SNP [dm6]	T	C	9.278e^-5	0.649	INTRON pxb	TF binding site mE1_TFBS_HSA
3L	12313611	3L_12313611_SNP [dm3] 3L_12320511_SNP [dm6]	A	C	9.332e^-5	0.649	INTERGENIC
2L	20390016	2L_20390016_SNP [dm3] 2L_20390016_SNP [dm6]	C	A	9.332e^-5	0.649	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9446758	X_9446758_SNP [dm3] X_9552725_SNP [dm6]	C	T	9.337e^-5	0.649	SYNONYMOUS_CODING l_1_G0320	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	22249105	2L_22249105_DEL [dm3] 2L_22249105_DEL [dm6]	AGTTTCA	G	9.361e^-5	0.649	UPSTREAM Tif-IA INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	569491	3L_569491_SNP [dm3] 3L_569491_SNP [dm6]	C	A	9.394e^-5	0.649	INTRON hipk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25349095	3R_25349095_SNP [dm3] 3R_29523373_SNP [dm6]	G	A	9.416e^-5	0.649	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14505242	3R_14505242_SNP [dm3] 3R_18679520_SNP [dm6]	G	A	9.443e^-5	0.649	SYNONYMOUS_CODING CG7706
3R	11530028	3R_11530028_SNP [dm3] 3R_15704306_SNP [dm6]	G	A	9.460e^-5	0.649	UPSTREAM CG5404 INTERGENIC
2L	8773382	2L_8773382_SNP [dm3] 2L_8773382_SNP [dm6]	C	G	9.461e^-5	0.649	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad
X	7226267	X_7226267_SNP [dm3] X_7332234_SNP [dm6]	A	G	9.473e^-5	0.649	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3L	575897	3L_575897_SNP [dm3] 3L_575897_SNP [dm6]	T	C	9.513e^-5	0.649	UTR_3_PRIME hipk
X	5095368	X_5095368_SNP [dm3] X_5201335_SNP [dm6]	C	A	9.518e^-5	0.649	INTRON rg & 1 other
3L	4872644	3L_4872644_SNP [dm3] 3L_4872644_SNP [dm6]	C	T	9.545e^-5	0.649	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10289430	3L_10289430_SNP [dm3] 3L_10296330_SNP [dm6]	T	C	9.679e^-5	0.652	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20292803	2L_20292803_SNP [dm3] 2L_20292803_SNP [dm6]	A	C	9.767e^-5	0.652	INTERGENIC
2R	16899998	2R_16899998_SNP [dm3] 2R_21012493_SNP [dm6]	C	G	9.802e^-5	0.652	SYNONYMOUS_CODING CG9346 UPSTREAM grau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20137590	2L_20137590_SNP [dm3] 2L_20137590_SNP [dm6]	T	C	9.817e^-5	0.652	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7576375	X_7576375_SNP [dm3] X_7682342_SNP [dm6]	G	A	9.931e^-5	0.652	UTR_3_PRIME CHES-1-like
2R	19997567	2R_19997567_SNP [dm3] 2R_24110044_SNP [dm6]	C	T	9.937e^-5	0.652	NON_SYNONYMOUS_CODING CG4049
3L	12822022	3L_12822022_SNP [dm3] 3L_12828922_SNP [dm6]	T	G	1.005e^-4	0.652	INTRON CG10960
2R	19978833	2R_19978833_SNP [dm3] 2R_24091310_SNP [dm6]	G	A	1.009e^-4	0.652	SYNONYMOUS_CODING snama DOWNSTREAM gek
3L	9746857	3L_9746857_SNP [dm3] 3L_9753757_SNP [dm6]	G	A	1.024e^-4	0.652	INTRON CG42268
2R	4006885	2R_4006885_SNP [dm3] 2R_8119380_SNP [dm6]	G	A	1.030e^-4	0.652	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
2R	19997463	2R_19997463_SNP [dm3] 2R_24109940_SNP [dm6]	A	G	1.039e^-4	0.652	SYNONYMOUS_CODING CG4049
2R	19998106	2R_19998106_SNP [dm3] 2R_24110583_SNP [dm6]	C	T	1.039e^-4	0.652	SYNONYMOUS_CODING CG4049
2R	20002231	2R_20002231_SNP [dm3] 2R_24114708_SNP [dm6]	C	T	1.039e^-4	0.652	START_GAINED CG3253 UTR_5_PRIME CG3253 UPSTREAM CG4049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	20003420	2R_20003420_SNP [dm3] 2R_24115897_SNP [dm6]	T	G	1.039e^-4	0.652	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
2R	20003613	2R_20003613_SNP [dm3] 2R_24116090_SNP [dm6]	G	T	1.039e^-4	0.652	UPSTREAM CG3257 INTRON CG3253
2R	20003784	2R_20003784_SNP [dm3] 2R_24116261_SNP [dm6]	C	T	1.039e^-4	0.652	SYNONYMOUS_CODING CG3253 UPSTREAM CG3257
2R	5078130	2R_5078130_SNP [dm3] 2R_9190625_SNP [dm6]	T	C	1.040e^-4	0.652	UPSTREAM CG8026 INTRON CG8026 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11529133	3R_11529133_SNP [dm3] 3R_15703411_SNP [dm6]	T	G	1.042e^-4	0.652	INTERGENIC
3R	11528714	3R_11528714_SNP [dm3] 3R_15702992_SNP [dm6]	C	T	1.044e^-4	0.652	INTERGENIC
3L	3439399	3L_3439399_SNP [dm3] 3L_3439399_SNP [dm6]	T	C	1.047e^-4	0.652	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	13802855	3R_13802855_SNP [dm3] 3R_17977133_SNP [dm6]	A	G	1.052e^-4	0.652	INTRON cpo
2L	22296953	2L_22296953_DEL [dm3] 2L_22296953_DEL [dm6]	TATTATTTATTATTTTATTG...	C	1.066e^-4	0.652	INTERGENIC	transposable element FlyBase
X	22182202	X_22182202_SNP [dm3] X_22780366_SNP [dm6]	A	G	1.069e^-4	0.652	INTRON CR44997	transposable element FlyBase
3L	4869918	3L_4869918_SNP [dm3] 3L_4869918_SNP [dm6]	C	T	1.075e^-4	0.652	INTRON CG17150	TF binding site mE1_TFBS_HSA
2L	4275140	2L_4275140_SNP [dm3] 2L_4275140_SNP [dm6]	C	T	1.078e^-4	0.652	INTERGENIC
2R	7693620	2R_7693620_SNP [dm3] 2R_11806115_SNP [dm6]	G	T	1.079e^-4	0.652	INTRON ths
3L	9250715	3L_9250715_SNP [dm3] 3L_9257615_SNP [dm6]	G	A	1.080e^-4	0.652	INTRON GluRIB
2R	4010903	2R_4010903_SNP [dm3] 2R_8123398_SNP [dm6]	T	C	1.080e^-4	0.652	UPSTREAM Asap INTRON Nup50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4013273	2R_4013273_SNP [dm3] 2R_8125768_SNP [dm6]	C	T	1.080e^-4	0.652	SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	4013579	2R_4013579_SNP [dm3] 2R_8126074_SNP [dm6]	C	T	1.080e^-4	0.652	SYNONYMOUS_CODING coil	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	4009325	2R_4009325_SNP [dm3] 2R_8121820_SNP [dm6]	A	T	1.081e^-4	0.652	INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	20374844	2L_20374844_SNP [dm3] 2L_20374844_SNP [dm6]	G	A	1.087e^-4	0.652	UPSTREAM Ugt37a1 INTERGENIC
3L	10656123	3L_10656123_SNP [dm3] 3L_10663023_SNP [dm6]	T	A	1.087e^-4	0.652	UTR_3_PRIME CG8003 UPSTREAM CG32068 DOWNSTREAM CG8003	TF binding site BDTNP1_TFBS_dl
3L	5917838	3L_5917838_SNP [dm3] 3L_5924738_SNP [dm6]	A	T	1.088e^-4	0.652	INTRON Vap-33B
2R	7636031	2R_7636031_INS [dm3] 2R_11748526_INS [dm6]	C	TTT	1.096e^-4	0.652	INTERGENIC
3R	20553405	3R_20553405_SNP [dm3] 3R_24727683_SNP [dm6]	T	A	1.097e^-4	0.652	INTRON tok	TF binding site BDTNP1_TFBS_dl
3L	11839682	3L_11839682_SNP [dm3] 3L_11846582_SNP [dm6]	C	A	1.101e^-4	0.652	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	3888666	X_3888666_SNP [dm3] X_3994633_SNP [dm6]	A	C	1.101e^-4	0.652	INTERGENIC
3R	11534125	3R_11534125_SNP [dm3] 3R_15708403_SNP [dm6]	C	T	1.105e^-4	0.652	UTR_3_PRIME CG5404
2R	20000332	2R_20000332_SNP [dm3] 2R_24112809_SNP [dm6]	A	C	1.107e^-4	0.652	NON_SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12578209	2L_12578209_SNP [dm3] 2L_12578209_SNP [dm6]	C	A	1.111e^-4	0.652	INTERGENIC
2L	20146910	2L_20146910_SNP [dm3] 2L_20146910_SNP [dm6]	T	C	1.117e^-4	0.652	INTERGENIC
2R	19675611	2R_19675611_SNP [dm3] 2R_23788088_SNP [dm6]	A	G	1.119e^-4	0.652	INTRON CG9850
2R	19994027	2R_19994027_SNP [dm3] 2R_24106504_SNP [dm6]	C	T	1.121e^-4	0.652	SYNONYMOUS_CODING enok DOWNSTREAM CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9251875	3L_9251875_SNP [dm3] 3L_9258775_SNP [dm6]	T	C	1.122e^-4	0.652	INTRON GluRIB
3L	7413724	3L_7413724_SNP [dm3] 3L_7420624_SNP [dm6]	A	G	1.125e^-4	0.652	INTERGENIC
X	10029205	X_10029205_SNP [dm3] X_10135172_SNP [dm6]	A	C	1.127e^-4	0.652	INTRON CR44894 & 1 other
3L	5521552	3L_5521552_SNP [dm3] 3L_5528452_SNP [dm6]	C	G	1.133e^-4	0.652	INTRON Lkr
3L	4872506	3L_4872506_SNP [dm3] 3L_4872506_SNP [dm6]	A	G	1.136e^-4	0.652	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25433835	3R_25433835_DEL [dm3] 3R_29608113_DEL [dm6]	CCCCAC	C	1.140e^-4	0.652	UPSTREAM Diedel2 INTRON alph
X	7226268	X_7226268_SNP [dm3] X_7332235_SNP [dm6]	T	G	1.142e^-4	0.652	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3R	8096432	3R_8096432_SNP [dm3] 3R_12270710_SNP [dm6]	T	A	1.154e^-4	0.652	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
3R	4743300	3R_4743300_DEL [dm3] 3R_8917578_DEL [dm6]	TCAGCT	T	1.154e^-4	0.652	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20294000	2L_20294000_SNP [dm3] 2L_20294000_SNP [dm6]	G	A	1.155e^-4	0.652	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16918794	2R_16918794_SNP [dm3] 2R_21031289_SNP [dm6]	C	T	1.155e^-4	0.652	INTERGENIC
3R	8099293	3R_8099293_SNP [dm3] 3R_12273571_SNP [dm6]	C	G	1.155e^-4	0.652	DOWNSTREAM Sfp87B INTRON svp
3R	11531099	3R_11531099_SNP [dm3] 3R_15705377_SNP [dm6]	A	T	1.158e^-4	0.652	INTRON CG5404
3R	4741784	3R_4741784_SNP [dm3] 3R_8916062_SNP [dm6]	A	T	1.162e^-4	0.652	INTRON pyd	TF binding site BDTNP1_TFBS_twi
2L	11703508	2L_11703508_SNP [dm3] 2L_11703508_SNP [dm6]	G	A	1.165e^-4	0.652	INTERGENIC
3R	4741628	3R_4741628_SNP [dm3] 3R_8915906_SNP [dm6]	A	G	1.169e^-4	0.652	INTRON pyd	TF binding site BDTNP1_TFBS_twi
2L	16599745	2L_16599745_SNP [dm3] 2L_16599745_SNP [dm6]	T	G	1.179e^-4	0.655	INTRON CG42389
2L	20314380	2L_20314380_DEL [dm3] 2L_20314380_DEL [dm6]	ATTAGGTGAGATATCGA...	A	1.182e^-4	0.655	INTRON spir	TF binding site mE1_TFBS_cad
3L	12821141	3L_12821141_SNP [dm3] 3L_12828041_SNP [dm6]	T	G	1.188e^-4	0.655	UPSTREAM CG10960 INTRON CG10960
3L	12824678	3L_12824678_SNP [dm3] 3L_12831578_SNP [dm6]	A	T	1.188e^-4	0.655	INTRON CG10960
3R	11520487	3R_11520487_SNP [dm3] 3R_15694765_SNP [dm6]	G	A	1.190e^-4	0.655	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
2R	5212202	2R_5212202_SNP [dm3] 2R_9324697_SNP [dm6]	G	A	1.194e^-4	0.655	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18366087	3L_18366087_SNP [dm3] 3L_18372987_SNP [dm6]	G	C	1.207e^-4	0.658	INTERGENIC
2R	12633704	2R_12633704_SNP [dm3] 2R_16746199_SNP [dm6]	G	T	1.210e^-4	0.658	SYNONYMOUS_CODING CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11530021	3R_11530021_SNP [dm3] 3R_15704299_SNP [dm6]	T	C	1.210e^-4	0.658	UPSTREAM CG5404 INTERGENIC
3L	2669599	3L_2669599_SNP [dm3] 3L_2669599_SNP [dm6]	G	A	1.219e^-4	0.658	INTRON Fife
3L	9043759	3L_9043759_SNP [dm3] 3L_9050659_SNP [dm6]	G	A	1.220e^-4	0.658	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_cad
3R	19039672	3R_19039672_SNP [dm3] 3R_23213950_SNP [dm6]	T	G	1.224e^-4	0.658	INTRON cnc	TF binding site mE1_TFBS_HSA
2R	10418022	2R_10418022_SNP [dm3] 2R_14530517_SNP [dm6]	A	T	1.225e^-4	0.658	INTRON ttv
X	5095289	X_5095289_SNP [dm3] X_5201256_SNP [dm6]	C	T	1.229e^-4	0.658	INTRON rg & 1 other
3R	11469506	3R_11469506_DEL [dm3] 3R_15643784_DEL [dm6]	TTTTT	C	1.231e^-4	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3776369	2R_3776369_SNP [dm3] 2R_7888864_SNP [dm6]	A	T	1.239e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3980028	3L_3980028_SNP [dm3] 3L_3980028_SNP [dm6]	C	T	1.245e^-4	0.659	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17417648	2R_17417648_INS [dm3] 2R_21530143_INS [dm6]	T	TT	1.250e^-4	0.659	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	869272	3L_869272_SNP [dm3] 3L_869272_SNP [dm6]	C	A	1.252e^-4	0.659	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20423036	2L_20423036_DEL [dm3] 2L_20423036_DEL [dm6]	GG	G	1.255e^-4	0.659	DOWNSTREAM snoRNA:Psi18S-525j & 2 others INTERGENIC
2L	20359352	2L_20359352_INS [dm3] 2L_20359352_INS [dm6]	C	CTC	1.261e^-4	0.659	UTR_3_PRIME RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
X	9212139	X_9212139_SNP [dm3] X_9318106_SNP [dm6]	T	C	1.265e^-4	0.659	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
2L	22306565	2L_22306565_SNP [dm3] 2L_22306565_SNP [dm6]	T	A	1.270e^-4	0.659	INTERGENIC
3L	7169398	3L_7169398_SNP [dm3] 3L_7176298_SNP [dm6]	G	A	1.273e^-4	0.659	INTRON Dscam2
3L	5309917	3L_5309917_SNP [dm3] 3L_5316817_SNP [dm6]	A	T	1.274e^-4	0.659	UPSTREAM CR45741 INTERGENIC
3L	1109685	3L_1109685_SNP [dm3] 3L_1109685_SNP [dm6]	T	A	1.276e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	10190611	X_10190611_SNP [dm3] X_10296578_SNP [dm6]	G	A	1.277e^-4	0.659	INTRON alpha-Man-I
3L	9957514	3L_9957514_SNP [dm3] 3L_9964414_SNP [dm6]	T	A	1.279e^-4	0.659	INTRON CG34356
3R	26774081	3R_26774081_SNP [dm3] 3R_30948359_SNP [dm6]	A	G	1.282e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14270930	2R_14270930_SNP [dm3] 2R_18383425_SNP [dm6]	A	T	1.287e^-4	0.659	UPSTREAM IM1 & 1 other INTERGENIC
2R	19447404	2R_19447404_SNP [dm3] 2R_23559881_SNP [dm6]	A	G	1.290e^-4	0.659	SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F
2L	11315092	2L_11315092_SNP [dm3] 2L_11315092_SNP [dm6]	G	A	1.296e^-4	0.66	INTERGENIC
3L	5521724	3L_5521724_SNP [dm3] 3L_5528624_SNP [dm6]	G	A	1.299e^-4	0.66	INTRON Lkr
3R	25129210	3R_25129210_SNP [dm3] 3R_29303488_SNP [dm6]	C	T	1.302e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3R	11529139	3R_11529139_SNP [dm3] 3R_15703417_SNP [dm6]	G	T	1.308e^-4	0.661	INTERGENIC
2R	20000870	2R_20000870_SNP [dm3] 2R_24113347_SNP [dm6]	A	C	1.317e^-4	0.662	INTRON CG4049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13586186	2L_13586186_SNP [dm3] 2L_13586186_SNP [dm6]	G	A	1.322e^-4	0.662	INTRON kuz
3L	9744744	3L_9744744_SNP [dm3] 3L_9751644_SNP [dm6]	C	T	1.324e^-4	0.662	UPSTREAM CG42268 INTRON CG42268	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	18240829	X_18240829_SNP [dm3] X_18346796_SNP [dm6]	T	C	1.324e^-4	0.662	INTRON CG6123
3R	19023591	3R_19023591_DEL [dm3] 3R_23197869_DEL [dm6]	TCTATTTTTCT...	T	1.330e^-4	0.662	INTRON cnc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	10418018	2R_10418018_SNP [dm3] 2R_14530513_SNP [dm6]	A	T	1.334e^-4	0.662	INTRON ttv
3L	4873509	3L_4873509_SNP [dm3] 3L_4873509_SNP [dm6]	A	T	1.339e^-4	0.662	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20433070	2L_20433070_SNP [dm3] 2L_20433070_SNP [dm6]	G	C	1.340e^-4	0.662	INTRON CG31688
3R	11534126	3R_11534126_SNP [dm3] 3R_15708404_SNP [dm6]	A	T	1.348e^-4	0.662	UTR_3_PRIME CG5404
X	3643857	X_3643857_SNP [dm3] X_3749824_SNP [dm6]	T	A	1.349e^-4	0.662	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10656326	3L_10656326_SNP [dm3] 3L_10663226_SNP [dm6]	G	A	1.350e^-4	0.662	UPSTREAM CG32068 DOWNSTREAM CG8003 INTERGENIC	TF binding site mE1_TFBS_sbb
X	18245725	X_18245725_SNP [dm3] X_18351692_SNP [dm6]	C	T	1.351e^-4	0.662	INTRON CG6123
3R	13984674	3R_13984674_SNP [dm3] 3R_18158952_SNP [dm6]	A	G	1.359e^-4	0.662	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3R	12308346	3R_12308346_SNP [dm3] 3R_16482624_SNP [dm6]	T	A	1.362e^-4	0.662	UPSTREAM CG14898 DOWNSTREAM Der-2 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	1833042	2L_1833042_SNP [dm3] 2L_1833042_SNP [dm6]	T	C	1.370e^-4	0.662	UPSTREAM c-cup INTERGENIC
3R	6416244	3R_6416244_SNP [dm3] 3R_10590522_SNP [dm6]	C	T	1.372e^-4	0.662	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	19983763	2R_19983763_SNP [dm3] 2R_24096240_SNP [dm6]	G	T	1.374e^-4	0.662	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8589320	2R_8589320_SNP [dm3] 2R_12701815_SNP [dm6]	A	G	1.380e^-4	0.662	DOWNSTREAM wuc INTERGENIC
2L	21110620	2L_21110620_SNP [dm3] 2L_21110620_SNP [dm6]	G	T	1.387e^-4	0.662	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl
2L	20141865	2L_20141865_INS [dm3] 2L_20141865_INS [dm6]	A	ACTTTCTAAGCCAGAAA...	1.397e^-4	0.662	INTERGENIC
2L	10940661	2L_10940661_SNP [dm3] 2L_10940661_SNP [dm6]	A	T	1.398e^-4	0.662	INTRON dpr2
3L	5917846	3L_5917846_MNP [dm3] 3L_5924746_MNP [dm6]	ACA	GTT	1.403e^-4	0.662	INTRON Vap-33B
2R	19975285	2R_19975285_SNP [dm3] 2R_24087762_SNP [dm6]	C	T	1.403e^-4	0.662	INTRON snama
3L	17392043	3L_17392043_SNP [dm3] 3L_17398943_SNP [dm6]	T	C	1.413e^-4	0.662	INTRON blot
2L	20136012	2L_20136012_SNP [dm3] 2L_20136012_SNP [dm6]	C	G	1.418e^-4	0.662	INTERGENIC
3L	12823941	3L_12823941_SNP [dm3] 3L_12830841_SNP [dm6]	A	G	1.422e^-4	0.662	INTRON CG10960	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14421334	3R_14421334_SNP [dm3] 3R_18595612_SNP [dm6]	A	T	1.424e^-4	0.662	NON_SYNONYMOUS_CODING CG14304 INTRON qin & 1 other
3R	4741745	3R_4741745_SNP [dm3] 3R_8916023_SNP [dm6]	T	C	1.425e^-4	0.662	INTRON pyd	TF binding site BDTNP1_TFBS_twi
2L	11938476	2L_11938476_SNP [dm3] 2L_11938476_SNP [dm6]	T	C	1.425e^-4	0.662	NON_SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
3R	11508437	3R_11508437_SNP [dm3] 3R_15682715_SNP [dm6]	G	T	1.435e^-4	0.662	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	1.436e^-4	0.662	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2L	13142363	2L_13142363_SNP [dm3] 2L_13142363_SNP [dm6]	G	A	1.437e^-4	0.662	DOWNSTREAM CG9928 & 1 other INTERGENIC
2L	20552807	2L_20552807_DEL [dm3] 2L_20552807_DEL [dm6]	TT	T	1.444e^-4	0.662	INTERGENIC
3R	18991774	3R_18991774_DEL [dm3] 3R_23166052_DEL [dm6]	CAAATAAA	T	1.451e^-4	0.662	INTERGENIC
2L	20145355	2L_20145355_SNP [dm3] 2L_20145355_SNP [dm6]	A	T	1.452e^-4	0.662	INTERGENIC
2R	14152597	2R_14152597_SNP [dm3] 2R_18265092_SNP [dm6]	T	A	1.455e^-4	0.662	INTERGENIC
2L	22265021	2L_22265021_SNP [dm3] 2L_22265021_SNP [dm6]	T	G	1.459e^-4	0.662	INTERGENIC	transposable element FlyBase
2R	1072733	2R_1072733_SNP [dm3] 2R_5185228_SNP [dm6]	G	A	1.460e^-4	0.662	INTRON Nipped-A	transposable element FlyBase
3L	19431360	3L_19431360_SNP [dm3] 3L_19438260_SNP [dm6]	G	A	1.460e^-4	0.662	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18558233	2R_18558233_SNP [dm3] 2R_22670728_SNP [dm6]	G	A	1.463e^-4	0.662	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	12526907	2L_12526907_SNP [dm3] 2L_12526907_SNP [dm6]	G	C	1.464e^-4	0.662	INTRON bun
3R	13153951	3R_13153951_SNP [dm3] 3R_17328229_SNP [dm6]	T	C	1.466e^-4	0.662	INTRON beat-IIa
2R	19975263	2R_19975263_SNP [dm3] 2R_24087740_SNP [dm6]	T	A	1.470e^-4	0.662	INTRON snama
2R	19975264	2R_19975264_SNP [dm3] 2R_24087741_SNP [dm6]	T	G	1.470e^-4	0.662	INTRON snama
3L	3702862	3L_3702862_SNP [dm3] 3L_3702862_SNP [dm6]	T	G	1.472e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20138974	2R_20138974_SNP [dm3] 2R_24251451_SNP [dm6]	T	G	1.473e^-4	0.662	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2L	12385475	2L_12385475_SNP [dm3] 2L_12385475_SNP [dm6]	A	C	1.479e^-4	0.664	INTRON bru-2
2R	17309833	2R_17309833_SNP [dm3] 2R_21422328_SNP [dm6]	C	T	1.492e^-4	0.668	INTRON Sdc
3L	5416519	3L_5416519_DEL [dm3] 3L_5423419_DEL [dm6]	ATT	A	1.509e^-4	0.671	UPSTREAM CG34391 INTERGENIC
3L	10454563	3L_10454563_SNP [dm3] 3L_10461463_SNP [dm6]	C	A	1.510e^-4	0.671	NON_SYNONYMOUS_CODING Gem3
2R	16940546	2R_16940546_SNP [dm3] 2R_21053041_SNP [dm6]	C	T	1.511e^-4	0.671	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19010712	3R_19010712_SNP [dm3] 3R_23184990_SNP [dm6]	T	C	1.516e^-4	0.672	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14534594	3L_14534594_SNP [dm3] 3L_14541494_SNP [dm6]	C	G	1.518e^-4	0.672	UTR_3_PRIME CG9238 DOWNSTREAM CG9238
2L	8169481	2L_8169481_SNP [dm3] 2L_8169481_SNP [dm6]	A	G	1.526e^-4	0.673	INTRON Piezo
2L	20300346	2L_20300346_SNP [dm3] 2L_20300346_SNP [dm6]	A	C	1.561e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11839485	X_11839485_SNP [dm3] X_11945452_SNP [dm6]	T	C	1.563e^-4	0.673	INTRON cac
3L	5359189	3L_5359189_SNP [dm3] 3L_5366089_SNP [dm6]	T	A	1.567e^-4	0.673	UPSTREAM Membrin & 1 other INTRON Uev1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11531138	3R_11531138_INS [dm3] 3R_15705416_INS [dm6]	A	AA	1.570e^-4	0.673	INTRON CG5404
2L	7460137	2L_7460137_SNP [dm3] 2L_7460137_SNP [dm6]	C	T	1.577e^-4	0.673	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11439197	3R_11439197_SNP [dm3] 3R_15613475_SNP [dm6]	C	T	1.586e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	12390965	2L_12390965_SNP [dm3] 2L_12390965_SNP [dm6]	G	A	1.594e^-4	0.673	INTRON bru-2
3L	12823618	3L_12823618_SNP [dm3] 3L_12830518_SNP [dm6]	G	T	1.596e^-4	0.673	INTRON CG10960	TF binding site mE1_TFBS_cnc
3L	6981207	3L_6981207_SNP [dm3] 3L_6988107_SNP [dm6]	T	C	1.600e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
2R	20003400	2R_20003400_SNP [dm3] 2R_24115877_SNP [dm6]	T	C	1.605e^-4	0.673	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
3L	4871916	3L_4871916_SNP [dm3] 3L_4871916_SNP [dm6]	A	G	1.607e^-4	0.673	INTRON CG17150	TF binding site mE1_TFBS_HSA
2R	18557856	2R_18557856_SNP [dm3] 2R_22670351_SNP [dm6]	T	C	1.610e^-4	0.673	UTR_3_PRIME CG13516 UPSTREAM RYBP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
3R	3953605	3R_3953605_SNP [dm3] 3R_8127883_SNP [dm6]	T	G	1.611e^-4	0.673	INTRON Gie	TF binding site mE1_TFBS_HSA
3L	3702842	3L_3702842_SNP [dm3] 3L_3702842_SNP [dm6]	T	C	1.617e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20083070	2L_20083070_SNP [dm3] 2L_20083070_SNP [dm6]	T	A	1.618e^-4	0.673	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15077955	3L_15077955_SNP [dm3] 3L_15084855_SNP [dm6]	A	G	1.624e^-4	0.673	INTRON cp309
3R	21259435	3R_21259435_SNP [dm3] 3R_25433713_SNP [dm6]	A	C	1.625e^-4	0.673	INTRON Fur1
2L	13141397	2L_13141397_SNP [dm3] 2L_13141397_SNP [dm6]	A	G	1.627e^-4	0.673	INTERGENIC
2R	18642440	2R_18642440_SNP [dm3] 2R_22754935_SNP [dm6]	C	T	1.629e^-4	0.673	UPSTREAM CG13526 INTRON CG42260
2R	5528117	2R_5528117_SNP [dm3] 2R_9640612_SNP [dm6]	G	T	1.631e^-4	0.673	INTRON Mmp2
3R	4777251	3R_4777251_SNP [dm3] 3R_8951529_SNP [dm6]	A	C	1.645e^-4	0.673	UTR_3_PRIME CG11966
2L	17610164	2L_17610164_SNP [dm3] 2L_17610164_SNP [dm6]	T	G	1.648e^-4	0.673	INTERGENIC
2R	15940336	2R_15940336_SNP [dm3] 2R_20052831_SNP [dm6]	C	T	1.649e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15824738	2R_15824738_SNP [dm3] 2R_19937233_SNP [dm6]	A	G	1.650e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11531237	3R_11531237_SNP [dm3] 3R_15705515_SNP [dm6]	C	T	1.651e^-4	0.673	INTRON CG5404
3R	11530589	3R_11530589_SNP [dm3] 3R_15704867_SNP [dm6]	G	A	1.652e^-4	0.673	NON_SYNONYMOUS_CODING CG5404
3R	22670385	3R_22670385_SNP [dm3] 3R_26844663_SNP [dm6]	C	G	1.653e^-4	0.673	INTRON Lerp
2L	20317206	2L_20317206_SNP [dm3] 2L_20317206_SNP [dm6]	T	G	1.665e^-4	0.673	INTRON spir & 1 other
3L	5933257	3L_5933257_SNP [dm3] 3L_5940157_SNP [dm6]	G	A	1.665e^-4	0.673	INTRON CG33993
3L	1392921	3L_1392921_SNP [dm3] 3L_1392921_SNP [dm6]	A	G	1.667e^-4	0.673	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	11520914	3R_11520914_SNP [dm3] 3R_15695192_SNP [dm6]	A	C	1.667e^-4	0.673	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
3L	5416388	3L_5416388_SNP [dm3] 3L_5423288_SNP [dm6]	T	A	1.667e^-4	0.673	UPSTREAM CG34391 INTERGENIC
3L	10289423	3L_10289423_SNP [dm3] 3L_10296323_SNP [dm6]	G	T	1.674e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25969677	3R_25969677_SNP [dm3] 3R_30143955_SNP [dm6]	G	C	1.679e^-4	0.673	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11508687	3R_11508687_SNP [dm3] 3R_15682965_SNP [dm6]	T	G	1.682e^-4	0.673	INTRON pxb	TF binding site mE1_TFBS_HSA
2L	11334539	2L_11334539_DEL [dm3] 2L_11334539_DEL [dm6]	GGG	G	1.688e^-4	0.673	INTERGENIC
2L	20317235	2L_20317235_SNP [dm3] 2L_20317235_SNP [dm6]	A	G	1.691e^-4	0.673	INTRON spir & 1 other
2L	20422800	2L_20422800_INS [dm3] 2L_20422800_INS [dm6]	T	TT	1.693e^-4	0.673	UTR_3_PRIME Arpc2 DOWNSTREAM snoRNA:Psi18S-640g & 2 others
3R	22670306	3R_22670306_DEL [dm3] 3R_26844584_DEL [dm6]	CC	C	1.693e^-4	0.673	INTRON Lerp
2R	15941019	2R_15941019_SNP [dm3] 2R_20053514_SNP [dm6]	A	G	1.693e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	16962436	2R_16962436_SNP [dm3] 2R_21074931_SNP [dm6]	C	A	1.700e^-4	0.673	UPSTREAM Treh INTRON Treh
3L	8653500	3L_8653500_DEL [dm3] 3L_8660400_DEL [dm6]	TGT	T	1.702e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21030811	3R_21030811_SNP [dm3] 3R_25205089_SNP [dm6]	G	C	1.704e^-4	0.673	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
2L	20351369	2L_20351369_SNP [dm3] 2L_20351369_SNP [dm6]	G	A	1.712e^-4	0.673	INTRON RtGEF
3L	1108809	3L_1108809_SNP [dm3] 3L_1108809_SNP [dm6]	T	A	1.715e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20317313	2L_20317313_SNP [dm3] 2L_20317313_SNP [dm6]	T	A	1.717e^-4	0.673	INTRON spir EXON CR43606
3R	18945971	3R_18945971_SNP [dm3] 3R_23120249_SNP [dm6]	G	T	1.730e^-4	0.673	UPSTREAM CenB1A INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3702864	3L_3702864_SNP [dm3] 3L_3702864_SNP [dm6]	C	T	1.730e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11469621	3R_11469621_SNP [dm3] 3R_15643899_SNP [dm6]	T	A	1.730e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11839670	3L_11839670_SNP [dm3] 3L_11846570_SNP [dm6]	C	T	1.732e^-4	0.673	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	20293934	2L_20293934_SNP [dm3] 2L_20293934_SNP [dm6]	T	C	1.736e^-4	0.673	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13160822	3R_13160822_SNP [dm3] 3R_17335100_SNP [dm6]	T	G	1.741e^-4	0.673	INTRON beat-IIa
2R	7636044	2R_7636044_SNP [dm3] 2R_11748539_SNP [dm6]	A	T	1.741e^-4	0.673	INTERGENIC
3L	6395012	3L_6395012_SNP [dm3] 3L_6401912_SNP [dm6]	T	C	1.742e^-4	0.673	INTRON CG42747
2L	20376524	2L_20376524_SNP [dm3] 2L_20376524_SNP [dm6]	C	T	1.742e^-4	0.673	DOWNSTREAM CG16798 INTERGENIC
3L	1108443	3L_1108443_SNP [dm3] 3L_1108443_SNP [dm6]	C	G	1.745e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19973309	2R_19973309_SNP [dm3] 2R_24085786_SNP [dm6]	A	C	1.746e^-4	0.673	SYNONYMOUS_CODING CG16786 UPSTREAM snama	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17849314	2R_17849314_SNP [dm3] 2R_21961809_SNP [dm6]	G	T	1.747e^-4	0.673	INTERGENIC
2L	4508804	2L_4508804_SNP [dm3] 2L_4508804_SNP [dm6]	T	C	1.751e^-4	0.673	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	568817	3L_568817_SNP [dm3] 3L_568817_SNP [dm6]	A	T	1.751e^-4	0.673	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20323856	2L_20323856_SNP [dm3] 2L_20323856_SNP [dm6]	G	A	1.754e^-4	0.673	INTRON spir	TF binding site BDTNP1_TFBS_twi
2R	10437881	2R_10437881_SNP [dm3] 2R_14550376_SNP [dm6]	G	A	1.755e^-4	0.673	INTRON ttv
X	5916262	X_5916262_SNP [dm3] X_6022229_SNP [dm6]	T	A	1.762e^-4	0.673	INTERGENIC
3L	12313604	3L_12313604_SNP [dm3] 3L_12320504_SNP [dm6]	G	T	1.768e^-4	0.673	INTERGENIC
X	14071021	X_14071021_SNP [dm3] X_14176988_SNP [dm6]	G	A	1.772e^-4	0.673	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
3L	869258	3L_869258_SNP [dm3] 3L_869258_SNP [dm6]	G	T	1.772e^-4	0.673	NON_SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24481156	3R_24481156_SNP [dm3] 3R_28655434_SNP [dm6]	G	T	1.773e^-4	0.673	INTERGENIC
2R	3299398	2R_3299398_SNP [dm3] 2R_7411893_SNP [dm6]	A	C	1.779e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17300176	2R_17300176_SNP [dm3] 2R_21412671_SNP [dm6]	A	G	1.781e^-4	0.673	INTRON Sdc
2L	20335057	2L_20335057_DEL [dm3] 2L_20335057_DEL [dm6]	GTGTGCCAAG	G	1.782e^-4	0.673	INTRON spir
3L	20943619	3L_20943619_SNP [dm3] 3L_20950519_SNP [dm6]	A	G	1.788e^-4	0.673	EXON CR45243	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15622155	3L_15622155_SNP [dm3] 3L_15629055_SNP [dm6]	C	G	1.788e^-4	0.673	INTRON comm3
3L	3700343	3L_3700343_SNP [dm3] 3L_3700343_SNP [dm6]	C	G	1.790e^-4	0.673	INTERGENIC
2R	19998366	2R_19998366_SNP [dm3] 2R_24110843_SNP [dm6]	A	G	1.791e^-4	0.673	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad
3L	7413586	3L_7413586_SNP [dm3] 3L_7420486_SNP [dm6]	T	A	1.805e^-4	0.674	INTERGENIC
3L	18657171	3L_18657171_SNP [dm3] 3L_18664071_SNP [dm6]	C	G	1.807e^-4	0.674	INTRON MYPT-75D
3R	10411462	3R_10411462_SNP [dm3] 3R_14585740_SNP [dm6]	G	C	1.807e^-4	0.674	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	19551021	2R_19551021_SNP [dm3] 2R_23663498_SNP [dm6]	T	A	1.815e^-4	0.674	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12822431	3L_12822431_SNP [dm3] 3L_12829331_SNP [dm6]	G	A	1.815e^-4	0.674	INTRON CG10960
3L	6395013	3L_6395013_SNP [dm3] 3L_6401913_SNP [dm6]	G	A	1.822e^-4	0.674	INTRON CG42747
3R	6849644	3R_6849644_SNP [dm3] 3R_11023922_SNP [dm6]	G	C	1.823e^-4	0.674	INTRON CG34114
2L	20137541	2L_20137541_SNP [dm3] 2L_20137541_SNP [dm6]	A	G	1.829e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12617280	2L_12617280_SNP [dm3] 2L_12617280_SNP [dm6]	C	A	1.835e^-4	0.674	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3811904	3L_3811904_SNP [dm3] 3L_3811904_SNP [dm6]	A	C	1.842e^-4	0.674	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6452462	X_6452462_SNP [dm3] X_6558429_SNP [dm6]	G	C	1.842e^-4	0.674	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	10814693	3R_10814693_SNP [dm3] 3R_14988971_SNP [dm6]	G	C	1.846e^-4	0.674	INTERGENIC
3R	7296528	3R_7296528_SNP [dm3] 3R_11470806_SNP [dm6]	T	G	1.848e^-4	0.674	INTERGENIC
2R	4128528	2R_4128528_SNP [dm3] 2R_8241023_SNP [dm6]	T	C	1.852e^-4	0.674	DOWNSTREAM pnut & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13137620	3R_13137620_SNP [dm3] 3R_17311898_SNP [dm6]	G	T	1.852e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5353523	2L_5353523_SNP [dm3] 2L_5353523_SNP [dm6]	A	G	1.854e^-4	0.674	INTRON nompC
3R	6416242	3R_6416242_SNP [dm3] 3R_10590520_SNP [dm6]	A	G	1.856e^-4	0.674	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	14540540	3L_14540540_SNP [dm3] 3L_14547440_SNP [dm6]	G	A	1.862e^-4	0.674	SYNONYMOUS_CODING CG9238 UTR_5_PRIME CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11921212	2L_11921212_SNP [dm3] 2L_11921212_SNP [dm6]	C	T	1.866e^-4	0.674	INTRON Pde1c
2L	3459770	2L_3459770_SNP [dm3] 2L_3459770_SNP [dm6]	C	T	1.869e^-4	0.674	SYNONYMOUS_CODING Sec5 DOWNSTREAM CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20317110	2L_20317110_INS [dm3] 2L_20317110_INS [dm6]	T	TAGTATTTATATTTAGATTA...	1.870e^-4	0.674	INTRON spir & 1 other
3L	14705065	3L_14705065_SNP [dm3] 3L_14711965_SNP [dm6]	G	A	1.875e^-4	0.674	INTRON ome
3L	8243384	3L_8243384_SNP [dm3] 3L_8250284_SNP [dm6]	T	G	1.878e^-4	0.674	INTRON Dscam4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6849636	3R_6849636_SNP [dm3] 3R_11023914_SNP [dm6]	T	C	1.883e^-4	0.674	INTRON CG34114
2L	4957402	2L_4957402_SNP [dm3] 2L_4957402_SNP [dm6]	T	A	1.884e^-4	0.674	SPLICE_SITE_REGION Marcal1 INTRON Marcal1
2L	6806404	2L_6806404_SNP [dm3] 2L_6806404_SNP [dm6]	G	C	1.888e^-4	0.674	UPSTREAM CG17375 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10535421	2L_10535421_SNP [dm3] 2L_10535421_SNP [dm6]	T	C	1.896e^-4	0.674	SYNONYMOUS_CODING CG18302
3R	20699141	3R_20699141_SNP [dm3] 3R_24873419_SNP [dm6]	C	T	1.899e^-4	0.674	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2R	10073377	2R_10073377_SNP [dm3] 2R_14185872_SNP [dm6]	T	A	1.902e^-4	0.674	SYNONYMOUS_CODING CG30069	TF binding site mE1_TFBS_HSA
3L	7769870	3L_7769870_SNP [dm3] 3L_7776770_SNP [dm6]	C	T	1.905e^-4	0.674	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	20698930	3R_20698930_SNP [dm3] 3R_24873208_SNP [dm6]	C	T	1.906e^-4	0.674	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
2R	9755428	2R_9755428_SNP [dm3] 2R_13867923_SNP [dm6]	T	C	1.908e^-4	0.674	INTRON shot
2R	15940803	2R_15940803_SNP [dm3] 2R_20053298_SNP [dm6]	C	T	1.918e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	12436278	2R_12436278_SNP [dm3] 2R_16548773_SNP [dm6]	G	C	1.921e^-4	0.676	INTERGENIC
3L	11839657	3L_11839657_SNP [dm3] 3L_11846557_SNP [dm6]	T	A	1.928e^-4	0.677	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	18558194	2R_18558194_DEL [dm3] 2R_22670689_DEL [dm6]	GC	G	1.932e^-4	0.677	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	3332661	3L_3332661_SNP [dm3] 3L_3332661_SNP [dm6]	C	T	1.942e^-4	0.678	SYNONYMOUS_CODING CG14961 DOWNSTREAM CG14969	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5939364	3L_5939364_SNP [dm3] 3L_5946264_SNP [dm6]	C	T	1.942e^-4	0.678	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	16110341	2L_16110341_INS [dm3] 2L_16110341_INS [dm6]	A	ACA	1.944e^-4	0.678	INTERGENIC
3L	2344777	3L_2344777_SNP [dm3] 3L_2344777_SNP [dm6]	A	G	1.959e^-4	0.681	UTR_3_PRIME MsR1
2R	7392759	2R_7392759_SNP [dm3] 2R_11505254_SNP [dm6]	C	A	1.960e^-4	0.681	INTRON inv
3R	19653430	3R_19653430_SNP [dm3] 3R_23827708_SNP [dm6]	A	T	1.975e^-4	0.682	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2427255	2L_2427255_SNP [dm3] 2L_2427255_SNP [dm6]	C	G	1.978e^-4	0.682	EXON CR44912
3R	17776174	3R_17776174_SNP [dm3] 3R_21950452_SNP [dm6]	T	A	1.987e^-4	0.682	INTRON Eip93F	TF binding site mE1_TFBS_zfh1
3R	24502782	3R_24502782_SNP [dm3] 3R_28677060_SNP [dm6]	A	G	1.988e^-4	0.682	INTRON CG9990
3R	4741652	3R_4741652_SNP [dm3] 3R_8915930_SNP [dm6]	G	A	1.991e^-4	0.682	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	18607624	3R_18607624_SNP [dm3] 3R_22781902_SNP [dm6]	A	G	1.993e^-4	0.682	UTR_5_PRIME CG7029 UPSTREAM CR43654 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7977376	3L_7977376_SNP [dm3] 3L_7984276_SNP [dm6]	G	A	1.995e^-4	0.682	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25127538	3R_25127538_DEL [dm3] 3R_29301816_DEL [dm6]	TCTGTTTTCTGAATT...	T	1.996e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3521052	2L_3521052_SNP [dm3] 2L_3521052_SNP [dm6]	G	C	1.999e^-4	0.682	NON_SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19131018	2L_19131018_SNP [dm3] 2L_19131018_SNP [dm6]	T	C	2.001e^-4	0.682	SYNONYMOUS_CODING Aats-asn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6372638	2R_6372638_SNP [dm3] 2R_10485133_SNP [dm6]	T	G	2.012e^-4	0.684	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5405018	2L_5405018_SNP [dm3] 2L_5405018_SNP [dm6]	A	G	2.014e^-4	0.684	NON_SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_z
3L	530819	3L_530819_SNP [dm3] 3L_530819_SNP [dm6]	T	C	2.020e^-4	0.684	INTRON klar
3R	18591771	3R_18591771_SNP [dm3] 3R_22766049_SNP [dm6]	G	C	2.022e^-4	0.684	NON_SYNONYMOUS_CODING CG4721 DOWNSTREAM CG13841 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
2L	20298997	2L_20298997_SNP [dm3] 2L_20298997_SNP [dm6]	G	T	2.024e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	2.036e^-4	0.684	INTRON spir & 1 other
2R	20142861	2R_20142861_SNP [dm3] 2R_24255338_SNP [dm6]	C	T	2.039e^-4	0.684	UTR_5_PRIME CG13575 DOWNSTREAM nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11839623	3L_11839623_SNP [dm3] 3L_11846523_SNP [dm6]	A	G	2.040e^-4	0.684	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	20504556	2L_20504556_SNP [dm3] 2L_20504556_SNP [dm6]	T	C	2.046e^-4	0.684	INTERGENIC
3L	19553249	3L_19553249_SNP [dm3] 3L_19560149_SNP [dm6]	A	C	2.047e^-4	0.684	DOWNSTREAM CR44676 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5767757	3R_5767757_SNP [dm3] 3R_9942035_SNP [dm6]	T	C	2.048e^-4	0.684	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	569463	3L_569463_SNP [dm3] 3L_569463_SNP [dm6]	C	T	2.055e^-4	0.684	INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12076637	2L_12076637_SNP [dm3] 2L_12076637_SNP [dm6]	A	T	2.060e^-4	0.684	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15736187	2L_15736187_DEL [dm3] 2L_15736187_DEL [dm6]	GGG	A	2.064e^-4	0.684	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18223801	X_18223801_SNP [dm3] X_18329768_SNP [dm6]	A	G	2.064e^-4	0.684	INTRON CG6123
2R	15940507	2R_15940507_SNP [dm3] 2R_20053002_SNP [dm6]	G	A	2.066e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	26053383	3R_26053383_SNP [dm3] 3R_30227661_SNP [dm6]	T	A	2.070e^-4	0.684	INTERGENIC
2R	19670739	2R_19670739_SNP [dm3] 2R_23783216_SNP [dm6]	G	T	2.071e^-4	0.684	INTRON CG9850
3R	11520043	3R_11520043_SNP [dm3] 3R_15694321_SNP [dm6]	G	T	2.080e^-4	0.685	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
3L	17239186	3L_17239186_SNP [dm3] 3L_17246086_SNP [dm6]	T	A	2.083e^-4	0.685	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13871645	2L_13871645_SNP [dm3] 2L_13871645_SNP [dm6]	G	A	2.085e^-4	0.685	INTRON CenG1A
3L	13193868	3L_13193868_SNP [dm3] 3L_13200768_SNP [dm6]	G	C	2.091e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	22719064	3R_22719064_INS [dm3] 3R_26893342_INS [dm6]	C	CC	2.095e^-4	0.686	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11439200	3R_11439200_SNP [dm3] 3R_15613478_SNP [dm6]	A	G	2.098e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_sbb
X	5095290	X_5095290_SNP [dm3] X_5201257_SNP [dm6]	A	T	2.104e^-4	0.686	INTRON rg & 1 other
2R	4236880	2R_4236880_SNP [dm3] 2R_8349375_SNP [dm6]	A	T	2.113e^-4	0.688	INTRON pdm3
X	7226227	X_7226227_SNP [dm3] X_7332194_SNP [dm6]	G	A	2.123e^-4	0.689	UPSTREAM CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
2R	16952034	2R_16952034_SNP [dm3] 2R_21064529_SNP [dm6]	C	T	2.123e^-4	0.689	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht4
2L	2427250	2L_2427250_SNP [dm3] 2L_2427250_SNP [dm6]	A	G	2.128e^-4	0.689	EXON CR44912
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	2.135e^-4	0.689	INTRON spir & 1 other
2R	20689422	2R_20689422_SNP [dm3] 2R_24801899_SNP [dm6]	A	G	2.142e^-4	0.689	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	5898800	2R_5898800_SNP [dm3] 2R_10011295_SNP [dm6]	A	C	2.145e^-4	0.689	DOWNSTREAM mir-4967 INTRON Pka-R2
3R	13803388	3R_13803388_SNP [dm3] 3R_17977666_SNP [dm6]	A	T	2.146e^-4	0.689	INTRON cpo
2R	12895294	2R_12895294_SNP [dm3] 2R_17007789_SNP [dm6]	T	A	2.149e^-4	0.689	UTR_3_PRIME Ehbp1 DOWNSTREAM Ehbp1 & 1 other
3R	27238130	3R_27238130_SNP [dm3] 3R_31412408_SNP [dm6]	A	T	2.150e^-4	0.689	INTRON Gprk2
3R	13857740	3R_13857740_SNP [dm3] 3R_18032018_SNP [dm6]	T	A	2.153e^-4	0.689	INTERGENIC
3R	27235971	3R_27235971_SNP [dm3] 3R_31410249_SNP [dm6]	A	T	2.160e^-4	0.689	INTRON Gprk2
3R	13138071	3R_13138071_INS [dm3] 3R_17312349_INS [dm6]	A	AA	2.165e^-4	0.689	INTERGENIC
2L	20133730	2L_20133730_SNP [dm3] 2L_20133730_SNP [dm6]	C	G	2.167e^-4	0.689	DOWNSTREAM CG10651 INTERGENIC
3L	14540312	3L_14540312_SNP [dm3] 3L_14547212_SNP [dm6]	A	G	2.167e^-4	0.689	SYNONYMOUS_CODING CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19031760	3R_19031760_DEL [dm3] 3R_23206038_DEL [dm6]	AG	A	2.178e^-4	0.691	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	4334605	X_4334605_SNP [dm3] X_4440572_SNP [dm6]	C	T	2.181e^-4	0.691	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	13785117	3R_13785117_SNP [dm3] 3R_17959395_SNP [dm6]	C	A	2.191e^-4	0.691	INTRON cpo
3R	17164966	3R_17164966_SNP [dm3] 3R_21339244_SNP [dm6]	A	T	2.192e^-4	0.691	INTRON CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13670025	3L_13670025_SNP [dm3] 3L_13676925_SNP [dm6]	C	T	2.193e^-4	0.691	INTRON bru-3
3L	2331432	3L_2331432_SNP [dm3] 3L_2331432_SNP [dm6]	G	A	2.201e^-4	0.691	INTRON MsR1
3R	7264921	3R_7264921_SNP [dm3] 3R_11439199_SNP [dm6]	T	A	2.212e^-4	0.691	INTRON CG17230 & 1 other
3R	6858009	3R_6858009_SNP [dm3] 3R_11032287_SNP [dm6]	T	C	2.214e^-4	0.691	INTRON CG34114
2R	9755498	2R_9755498_SNP [dm3] 2R_13867993_SNP [dm6]	G	A	2.225e^-4	0.691	INTRON shot
2L	4018893	2L_4018893_SNP [dm3] 2L_4018893_SNP [dm6]	A	C	2.227e^-4	0.691	INTERGENIC
2L	6106995	2L_6106995_SNP [dm3] 2L_6106995_SNP [dm6]	G	T	2.228e^-4	0.691	INTRON stai
3L	2253847	3L_2253847_SNP [dm3] 3L_2253847_SNP [dm6]	T	G	2.229e^-4	0.691	SYNONYMOUS_CODING CG1275	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11526403	3R_11526403_SNP [dm3] 3R_15700681_SNP [dm6]	A	G	2.230e^-4	0.691	INTERGENIC
3R	18945899	3R_18945899_SNP [dm3] 3R_23120177_SNP [dm6]	G	A	2.231e^-4	0.691	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	7947542	2R_7947542_SNP [dm3] 2R_12060037_SNP [dm6]	T	C	2.235e^-4	0.691	INTRON Drep-3
X	5916260	X_5916260_SNP [dm3] X_6022227_SNP [dm6]	T	A	2.236e^-4	0.691	INTERGENIC
3L	5165002	3L_5165002_SNP [dm3] 3L_5171902_SNP [dm6]	A	G	2.237e^-4	0.691	INTRON shep
X	11049303	X_11049303_SNP [dm3] X_11155270_SNP [dm6]	A	C	2.241e^-4	0.691	INTRON Dlic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12331673	X_12331673_SNP [dm3] X_12437640_SNP [dm6]	T	C	2.254e^-4	0.693	INTRON Pkcdelta
2R	14049653	2R_14049653_SNP [dm3] 2R_18162148_SNP [dm6]	G	A	2.255e^-4	0.693	INTRON CG10915
2R	17169326	2R_17169326_SNP [dm3] 2R_21281821_SNP [dm6]	G	A	2.263e^-4	0.694	UPSTREAM MFS16 & 1 other DOWNSTREAM Rgk3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	3920735	2R_3920735_SNP [dm3] 2R_8033230_SNP [dm6]	T	G	2.270e^-4	0.694	INTRON Optix
2L	20044948	2L_20044948_SNP [dm3] 2L_20044948_SNP [dm6]	G	A	2.280e^-4	0.694	INTRON sNPF
3R	18991842	3R_18991842_SNP [dm3] 3R_23166120_SNP [dm6]	T	C	2.281e^-4	0.694	INTERGENIC
3L	16008031	3L_16008031_DEL [dm3] 3L_16014931_DEL [dm6]	AAA	A	2.285e^-4	0.694	INTERGENIC
3R	4052977	3R_4052977_SNP [dm3] 3R_8227255_SNP [dm6]	A	T	2.291e^-4	0.694	UPSTREAM CR45550 EXON CR45551	TF binding site mE1_TFBS_cad
2L	20313551	2L_20313551_SNP [dm3] 2L_20313551_SNP [dm6]	G	T	2.291e^-4	0.694	INTRON spir
2L	22636652	2L_22636652_SNP [dm3] 2L_22743920_SNP [dm6]	G	C	2.293e^-4	0.694	INTRON CG40006
2R	13920891	2R_13920891_SNP [dm3] 2R_18033386_SNP [dm6]	T	C	2.299e^-4	0.694	INTERGENIC
3L	9251882	3L_9251882_SNP [dm3] 3L_9258782_SNP [dm6]	A	G	2.302e^-4	0.694	INTRON GluRIB
2R	17027934	2R_17027934_SNP [dm3] 2R_21140429_SNP [dm6]	C	G	2.302e^-4	0.694	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10618590	2L_10618590_SNP [dm3] 2L_10618590_SNP [dm6]	A	C	2.307e^-4	0.694	INTRON Trim9
3L	16689249	3L_16689249_SNP [dm3] 3L_16696149_SNP [dm6]	C	A	2.307e^-4	0.694	INTRON CR45179 & 2 others
2L	20136566	2L_20136566_SNP [dm3] 2L_20136566_SNP [dm6]	G	T	2.315e^-4	0.696	INTERGENIC
2L	11502987	2L_11502987_SNP [dm3] 2L_11502987_SNP [dm6]	G	A	2.319e^-4	0.696	INTRON spz4
2L	1715374	2L_1715374_SNP [dm3] 2L_1715374_SNP [dm6]	C	T	2.329e^-4	0.698	SYNONYMOUS_CODING frtz DOWNSTREAM Rim2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22480041	3R_22480041_SNP [dm3] 3R_26654319_SNP [dm6]	A	G	2.334e^-4	0.698	INTRON beat-VII
3L	10226087	3L_10226087_SNP [dm3] 3L_10232987_SNP [dm6]	A	G	2.340e^-4	0.699	INTERGENIC
2L	21111512	2L_21111512_SNP [dm3] 2L_21111512_SNP [dm6]	A	T	2.346e^-4	0.7	INTRON Nhe2
3R	11456891	3R_11456891_SNP [dm3] 3R_15631169_SNP [dm6]	C	G	2.358e^-4	0.702	INTERGENIC
3L	1549105	3L_1549105_SNP [dm3] 3L_1549105_SNP [dm6]	T	A	2.375e^-4	0.704	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4722861	3R_4722861_SNP [dm3] 3R_8897139_SNP [dm6]	A	T	2.377e^-4	0.704	INTRON pyd
3R	26663454	3R_26663454_DEL [dm3] 3R_30837732_DEL [dm6]	ACA	A	2.378e^-4	0.704	INTRON CG15544
2R	4009898	2R_4009898_SNP [dm3] 2R_8122393_SNP [dm6]	C	T	2.383e^-4	0.704	UTR_5_PRIME Asap UPSTREAM Nup50	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11498096	3R_11498096_SNP [dm3] 3R_15672374_SNP [dm6]	A	G	2.386e^-4	0.704	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	19220699	3L_19220699_SNP [dm3] 3L_19227599_SNP [dm6]	C	T	2.392e^-4	0.704	INTRON fz2
X	9212129	X_9212129_SNP [dm3] X_9318096_SNP [dm6]	G	A	2.392e^-4	0.704	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
X	10051924	X_10051924_SNP [dm3] X_10157891_SNP [dm6]	A	G	2.412e^-4	0.708	UPSTREAM CG43902 INTRON CR44894
3L	12313476	3L_12313476_SNP [dm3] 3L_12320376_SNP [dm6]	A	T	2.415e^-4	0.708	INTERGENIC
3R	17227802	3R_17227802_SNP [dm3] 3R_21402080_SNP [dm6]	G	C	2.417e^-4	0.708	NON_SYNONYMOUS_CODING CG43311	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13984635	3R_13984635_SNP [dm3] 3R_18158913_SNP [dm6]	A	T	2.432e^-4	0.711	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
2R	15991498	2R_15991498_DEL [dm3] 2R_20103993_DEL [dm6]	AGAAACTGTA	A	2.434e^-4	0.711	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
X	10051933	X_10051933_SNP [dm3] X_10157900_SNP [dm6]	T	A	2.446e^-4	0.712	UPSTREAM CG43902 INTRON CR44894
2L	10940654	2L_10940654_SNP [dm3] 2L_10940654_SNP [dm6]	T	A	2.450e^-4	0.712	INTRON dpr2
3L	8068957	3L_8068957_SNP [dm3] 3L_8075857_SNP [dm6]	T	G	2.452e^-4	0.712	INTRON Ect4
3L	14035013	3L_14035013_SNP [dm3] 3L_14041913_SNP [dm6]	T	C	2.452e^-4	0.712	INTRON Hsc70Cb
3L	14217752	3L_14217752_SNP [dm3] 3L_14224652_SNP [dm6]	G	C	2.458e^-4	0.713	INTRON nuf
2L	20488968	2L_20488968_SNP [dm3] 2L_20488968_SNP [dm6]	A	G	2.467e^-4	0.713	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17996962	2L_17996962_SNP [dm3] 2L_17996962_SNP [dm6]	C	A	2.477e^-4	0.713	INTERGENIC
3L	11747312	3L_11747312_SNP [dm3] 3L_11754212_SNP [dm6]	C	T	2.480e^-4	0.713	INTRON CG6024
2R	14268709	2R_14268709_SNP [dm3] 2R_18381204_SNP [dm6]	C	A	2.482e^-4	0.713	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17236029	2L_17236029_SNP [dm3] 2L_17236029_SNP [dm6]	C	A	2.484e^-4	0.713	INTRON beat-IIIc
X	3643792	X_3643792_SNP [dm3] X_3749759_SNP [dm6]	G	A	2.488e^-4	0.713	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4010657	2R_4010657_SNP [dm3] 2R_8123152_SNP [dm6]	A	T	2.490e^-4	0.713	SYNONYMOUS_CODING Nup50 UPSTREAM Asap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18991829	3R_18991829_SNP [dm3] 3R_23166107_SNP [dm6]	A	T	2.493e^-4	0.713	INTERGENIC
2L	857932	2L_857932_SNP [dm3] 2L_857932_SNP [dm6]	T	G	2.495e^-4	0.713	DOWNSTREAM mir-375 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14665614	3L_14665614_SNP [dm3] 3L_14672514_SNP [dm6]	C	A	2.503e^-4	0.713	UPSTREAM ome & 1 other DOWNSTREAM dlp INTERGENIC	TF binding site mE1_TFBS_Trl
3R	13061190	3R_13061190_SNP [dm3] 3R_17235468_SNP [dm6]	C	G	2.505e^-4	0.713	INTRON beat-IIb
3R	27236086	3R_27236086_SNP [dm3] 3R_31410364_SNP [dm6]	A	T	2.508e^-4	0.713	UTR_5_PRIME Gprk2 INTRON Gprk2
3L	4188374	3L_4188374_SNP [dm3] 3L_4188374_SNP [dm6]	T	A	2.517e^-4	0.713	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	2.517e^-4	0.713	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17235656	3R_17235656_SNP [dm3] 3R_21409934_SNP [dm6]	A	C	2.519e^-4	0.713	DOWNSTREAM lbl & 1 other INTERGENIC
3L	10656120	3L_10656120_SNP [dm3] 3L_10663020_SNP [dm6]	A	C	2.522e^-4	0.713	UTR_3_PRIME CG8003 UPSTREAM CG32068 DOWNSTREAM CG8003	TF binding site BDTNP1_TFBS_dl
3R	13894407	3R_13894407_SNP [dm3] 3R_18068685_SNP [dm6]	C	T	2.525e^-4	0.713	INTERGENIC
3R	4743637	3R_4743637_SNP [dm3] 3R_8917915_SNP [dm6]	T	C	2.531e^-4	0.713	INTRON pyd
3R	27235972	3R_27235972_SNP [dm3] 3R_31410250_SNP [dm6]	T	G	2.534e^-4	0.713	INTRON Gprk2
3L	542184	3L_542184_SNP [dm3] 3L_542184_SNP [dm6]	A	G	2.544e^-4	0.713	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	542217	3L_542217_SNP [dm3] 3L_542217_SNP [dm6]	C	T	2.544e^-4	0.713	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4872620	3L_4872620_SNP [dm3] 3L_4872620_SNP [dm6]	T	C	2.545e^-4	0.713	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8299665	2R_8299665_SNP [dm3] 2R_12412160_SNP [dm6]	T	A	2.555e^-4	0.713	DOWNSTREAM CG33627 INTERGENIC
2L	20300390	2L_20300390_INS [dm3] 2L_20300390_INS [dm6]	T	TG	2.558e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20839092	X_20839092_SNP [dm3] X_20968065_SNP [dm6]	C	A	2.564e^-4	0.713	INTERGENIC
3L	17243753	3L_17243753_DEL [dm3] 3L_17250653_DEL [dm6]	TG	C	2.578e^-4	0.713	INTRON CR43870
3L	4872896	3L_4872896_SNP [dm3] 3L_4872896_SNP [dm6]	C	T	2.581e^-4	0.713	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5679832	2L_5679832_DEL [dm3] 2L_5679832_DEL [dm6]	ATATATTCTGCT...	C	2.582e^-4	0.713	DOWNSTREAM CG12511 INTERGENIC
2R	6541267	2R_6541267_SNP [dm3] 2R_10653762_SNP [dm6]	T	C	2.583e^-4	0.713	INTERGENIC
X	20836785	X_20836785_SNP [dm3] X_20965758_SNP [dm6]	T	G	2.583e^-4	0.713	UPSTREAM CG1304 INTERGENIC
X	8893010	X_8893010_SNP [dm3] X_8998977_SNP [dm6]	A	C	2.584e^-4	0.713	INTRON rdgA & 1 other
2L	22262576	2L_22262576_SNP [dm3] 2L_22262576_SNP [dm6]	G	C	2.585e^-4	0.713	INTERGENIC
2R	3847748	2R_3847748_SNP [dm3] 2R_7960243_SNP [dm6]	C	T	2.585e^-4	0.713	UTR_3_PRIME Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11839743	3L_11839743_SNP [dm3] 3L_11846643_SNP [dm6]	T	G	2.590e^-4	0.713	DOWNSTREAM CG12521 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	8898193	2R_8898193_SNP [dm3] 2R_13010688_SNP [dm6]	A	T	2.594e^-4	0.713	INTERGENIC
2R	3749013	2R_3749013_SNP [dm3] 2R_7861508_SNP [dm6]	A	C	2.598e^-4	0.713	INTRON Dgk
3L	17394700	3L_17394700_SNP [dm3] 3L_17401600_SNP [dm6]	T	A	2.615e^-4	0.714	UPSTREAM noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	1532094	X_1532094_SNP [dm3] X_1638061_SNP [dm6]	T	G	2.619e^-4	0.714	INTRON Mur2B & 1 other
3L	4188235	3L_4188235_SNP [dm3] 3L_4188235_SNP [dm6]	T	C	2.622e^-4	0.714	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4188315	3L_4188315_SNP [dm3] 3L_4188315_SNP [dm6]	G	A	2.622e^-4	0.714	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21109695	2L_21109695_SNP [dm3] 2L_21109695_SNP [dm6]	A	G	2.624e^-4	0.714	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19199086	3L_19199086_SNP [dm3] 3L_19205986_SNP [dm6]	A	T	2.625e^-4	0.714	INTRON fz2
3R	26256477	3R_26256477_SNP [dm3] 3R_30430755_SNP [dm6]	C	T	2.633e^-4	0.715	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3L	12846277	3L_12846277_SNP [dm3] 3L_12853177_SNP [dm6]	T	C	2.640e^-4	0.715	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
2L	13873170	2L_13873170_SNP [dm3] 2L_13873170_SNP [dm6]	C	G	2.641e^-4	0.715	INTRON CenG1A
2L	22265018	2L_22265018_SNP [dm3] 2L_22265018_SNP [dm6]	A	C	2.642e^-4	0.715	INTERGENIC	transposable element FlyBase
3L	1419970	3L_1419970_SNP [dm3] 3L_1419970_SNP [dm6]	G	A	2.650e^-4	0.715	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	20317281	2L_20317281_SNP [dm3] 2L_20317281_SNP [dm6]	G	T	2.659e^-4	0.715	INTRON spir & 1 other
3L	18267558	3L_18267558_SNP [dm3] 3L_18274458_SNP [dm6]	T	C	2.669e^-4	0.715	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10940636	2L_10940636_SNP [dm3] 2L_10940636_SNP [dm6]	C	G	2.671e^-4	0.715	INTRON dpr2
3R	18590573	3R_18590573_SNP [dm3] 3R_22764851_SNP [dm6]	G	A	2.673e^-4	0.715	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5781185	3L_5781185_SNP [dm3] 3L_5788085_SNP [dm6]	T	A	2.685e^-4	0.715	INTERGENIC
2R	15536789	2R_15536789_SNP [dm3] 2R_19649284_SNP [dm6]	G	A	2.687e^-4	0.715	INTERGENIC
3R	11534118	3R_11534118_MNP [dm3] 3R_15708396_MNP [dm6]	CAC	TTG	2.687e^-4	0.715	UTR_3_PRIME CG5404
2R	3776384	2R_3776384_DEL [dm3] 2R_7888879_DEL [dm6]	GAATTTTA	G	2.692e^-4	0.715	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18936291	2L_18936291_SNP [dm3] 2L_18936291_SNP [dm6]	T	C	2.692e^-4	0.715	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17371001	X_17371001_SNP [dm3] X_17476968_SNP [dm6]	G	C	2.696e^-4	0.715	INTRON CG43658
3R	26985873	3R_26985873_SNP [dm3] 3R_31160151_SNP [dm6]	G	A	2.705e^-4	0.715	INTRON Gycbeta100B & 1 other
3L	2479734	3L_2479734_SNP [dm3] 3L_2479734_SNP [dm6]	C	G	2.707e^-4	0.715	INTRON CG45186
2L	13874127	2L_13874127_SNP [dm3] 2L_13874127_SNP [dm6]	A	G	2.709e^-4	0.715	INTRON CenG1A
3R	11534116	3R_11534116_SNP [dm3] 3R_15708394_SNP [dm6]	A	T	2.717e^-4	0.715	UTR_3_PRIME CG5404
3L	3439158	3L_3439158_SNP [dm3] 3L_3439158_SNP [dm6]	C	A	2.717e^-4	0.715	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16934242	X_16934242_SNP [dm3] X_17040209_SNP [dm6]	A	C	2.718e^-4	0.715	INTRON CG45002
2L	17610150	2L_17610150_SNP [dm3] 2L_17610150_SNP [dm6]	T	C	2.718e^-4	0.715	INTERGENIC
3L	12378861	3L_12378861_SNP [dm3] 3L_12385761_SNP [dm6]	A	G	2.721e^-4	0.715	INTRON Ncc69
3R	11541220	3R_11541220_SNP [dm3] 3R_15715498_SNP [dm6]	A	G	2.723e^-4	0.715	DOWNSTREAM CG31294 INTERGENIC
3R	4723715	3R_4723715_SNP [dm3] 3R_8897993_SNP [dm6]	C	T	2.728e^-4	0.715	INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20628722	2L_20628722_SNP [dm3] 2L_20628722_SNP [dm6]	A	C	2.729e^-4	0.715	INTERGENIC
3R	19030572	3R_19030572_SNP [dm3] 3R_23204850_SNP [dm6]	T	A	2.731e^-4	0.715	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	20886620	3R_20886620_SNP [dm3] 3R_25060898_SNP [dm6]	G	A	2.735e^-4	0.715	INTRON Unc-13-4B	TF binding site mE1_TFBS_cad
3R	25727296	3R_25727296_SNP [dm3] 3R_29901574_SNP [dm6]	T	C	2.756e^-4	0.719	INTRON CG31038
3R	11534135	3R_11534135_SNP [dm3] 3R_15708413_SNP [dm6]	G	A	2.756e^-4	0.719	UTR_3_PRIME CG5404
3L	16317970	3L_16317970_SNP [dm3] 3L_16324870_SNP [dm6]	T	C	2.759e^-4	0.719	DOWNSTREAM CG13040 & 1 other INTERGENIC
2R	3116410	2R_3116410_SNP [dm3] 2R_7228905_SNP [dm6]	C	T	2.770e^-4	0.72	INTERGENIC
3R	17963041	3R_17963041_DEL [dm3] 3R_22137319_DEL [dm6]	TAACCCTTGGTAT...	T	2.772e^-4	0.72	INTRON SKIP
X	20965383	X_20965383_SNP [dm3] X_21094356_SNP [dm6]	T	C	2.785e^-4	0.722	SYNONYMOUS_CODING stg1 UTR_5_PRIME CG11566	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11534134	3R_11534134_SNP [dm3] 3R_15708412_SNP [dm6]	T	A	2.786e^-4	0.722	UTR_3_PRIME CG5404
2L	20476583	2L_20476583_SNP [dm3] 2L_20476583_SNP [dm6]	A	T	2.797e^-4	0.724	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13984641	3R_13984641_SNP [dm3] 3R_18158919_SNP [dm6]	A	G	2.808e^-4	0.725	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
X	4305331	X_4305331_SNP [dm3] X_4411298_SNP [dm6]	C	A	2.821e^-4	0.725	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	5569504	X_5569504_INS [dm3] X_5675471_INS [dm6]	T	TTCCCATATCCATATCCAT...	2.823e^-4	0.725	CODON_INSERTION Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17667621	2R_17667621_SNP [dm3] 2R_21780116_SNP [dm6]	G	A	2.824e^-4	0.725	INTERGENIC
2R	15588170	2R_15588170_SNP [dm3] 2R_19700665_SNP [dm6]	G	T	2.828e^-4	0.725	SYNONYMOUS_CODING Obp56c	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	3433452	2L_3433452_INS [dm3] 2L_3433452_INS [dm6]	T	TT	2.831e^-4	0.725	INTERGENIC
2L	20500347	2L_20500347_SNP [dm3] 2L_20500347_SNP [dm6]	G	T	2.836e^-4	0.725	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20322090	2L_20322090_SNP [dm3] 2L_20322090_SNP [dm6]	A	G	2.842e^-4	0.725	INTRON spir	TF binding site mE1_TFBS_cad
2R	16534187	2R_16534187_DEL [dm3] 2R_20646682_DEL [dm6]	TATAT	G	2.847e^-4	0.725	UTR_5_PRIME Lrt DOWNSTREAM DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4331747	X_4331747_SNP [dm3] X_4437714_SNP [dm6]	C	T	2.849e^-4	0.725	INTRON CR32773 & 1 other
2R	18851687	2R_18851687_SNP [dm3] 2R_22964164_SNP [dm6]	T	G	2.850e^-4	0.725	INTERGENIC
3L	5416468	3L_5416468_SNP [dm3] 3L_5423368_SNP [dm6]	A	T	2.853e^-4	0.725	UPSTREAM CG34391 INTERGENIC
X	4560960	X_4560960_SNP [dm3] X_4666927_SNP [dm6]	T	A	2.854e^-4	0.725	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3L	5307053	3L_5307053_SNP [dm3] 3L_5313953_SNP [dm6]	T	C	2.856e^-4	0.725	INTERGENIC
X	10591692	X_10591692_SNP [dm3] X_10697659_SNP [dm6]	A	C	2.867e^-4	0.725	INTRON X11Lbeta
3R	11604750	3R_11604750_SNP [dm3] 3R_15779028_SNP [dm6]	T	C	2.868e^-4	0.725	UPSTREAM CG5614 INTERGENIC
2R	18178759	2R_18178759_DEL [dm3] 2R_22291254_DEL [dm6]	ATAAAAATATAA...	A	2.868e^-4	0.725	UPSTREAM CR43422 INTERGENIC
X	3973432	X_3973432_SNP [dm3] X_4079399_SNP [dm6]	C	T	2.871e^-4	0.725	INTRON CG43689	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3699920	3L_3699920_SNP [dm3] 3L_3699920_SNP [dm6]	T	C	2.875e^-4	0.725	INTERGENIC
X	13128817	X_13128817_SNP [dm3] X_13234784_SNP [dm6]	A	T	2.878e^-4	0.725	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	10405614	3L_10405614_SNP [dm3] 3L_10412514_SNP [dm6]	C	G	2.885e^-4	0.725	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	5306804	3L_5306804_SNP [dm3] 3L_5313704_SNP [dm6]	T	C	2.900e^-4	0.726	INTERGENIC
2L	20317242	2L_20317242_SNP [dm3] 2L_20317242_SNP [dm6]	A	G	2.900e^-4	0.726	INTRON spir & 1 other
3R	13803032	3R_13803032_SNP [dm3] 3R_17977310_SNP [dm6]	C	T	2.906e^-4	0.726	INTRON cpo
3R	8104080	3R_8104080_SNP [dm3] 3R_12278358_SNP [dm6]	A	T	2.907e^-4	0.726	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	759452	3L_759452_SNP [dm3] 3L_759452_SNP [dm6]	G	A	2.909e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26985710	3R_26985710_SNP [dm3] 3R_31159988_SNP [dm6]	T	C	2.910e^-4	0.726	INTRON Gycbeta100B & 1 other
2L	22265020	2L_22265020_SNP [dm3] 2L_22265020_SNP [dm6]	A	T	2.914e^-4	0.726	INTERGENIC	transposable element FlyBase
3L	8243294	3L_8243294_SNP [dm3] 3L_8250194_SNP [dm6]	A	C	2.922e^-4	0.727	INTRON Dscam4	TF binding site mE1_TFBS_chinmo
3L	11641103	3L_11641103_SNP [dm3] 3L_11648003_SNP [dm6]	T	C	2.929e^-4	0.727	NON_SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18972401	2R_18972401_SNP [dm3] 2R_23084878_SNP [dm6]	G	A	2.933e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11002511	3R_11002511_SNP [dm3] 3R_15176789_SNP [dm6]	A	G	2.935e^-4	0.727	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	18211552	3R_18211552_SNP [dm3] 3R_22385830_SNP [dm6]	T	A	2.945e^-4	0.729	SYNONYMOUS_CODING CG43343 DOWNSTREAM CG5379	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12313498	3L_12313498_SNP [dm3] 3L_12320398_SNP [dm6]	G	T	2.952e^-4	0.729	INTERGENIC
X	18972069	X_18972069_INS [dm3] X_19078036_INS [dm6]	G	GCGGCGG	2.969e^-4	0.731
3L	1086910	3L_1086910_SNP [dm3] 3L_1086910_SNP [dm6]	T	C	2.970e^-4	0.731	INTRON bab1
X	3662923	X_3662923_SNP [dm3] X_3768890_SNP [dm6]	T	C	2.972e^-4	0.731	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7735059	3L_7735059_SNP [dm3] 3L_7741959_SNP [dm6]	G	A	2.975e^-4	0.731	INTRON CG32373 & 1 other
3R	3783969	3R_3783969_SNP [dm3] 3R_7958247_SNP [dm6]	T	C	2.984e^-4	0.731	INTRON dsx
3R	21259496	3R_21259496_SNP [dm3] 3R_25433774_SNP [dm6]	A	G	3.000e^-4	0.731	INTRON Fur1
2L	7162943	2L_7162943_SNP [dm3] 2L_7162943_SNP [dm6]	C	G	3.004e^-4	0.731	INTERGENIC
2R	4918794	2R_4918794_SNP [dm3] 2R_9031289_SNP [dm6]	T	A	3.005e^-4	0.731	UPSTREAM CG8170 INTERGENIC
2R	6564198	2R_6564198_SNP [dm3] 2R_10676693_SNP [dm6]	C	T	3.008e^-4	0.731	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20553366	3R_20553366_SNP [dm3] 3R_24727644_SNP [dm6]	C	T	3.018e^-4	0.731	INTRON tok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21111580	2L_21111580_DEL [dm3] 2L_21111580_DEL [dm6]	TCCAC	G	3.024e^-4	0.731	INTRON Nhe2
2L	21111586	2L_21111586_DEL [dm3] 2L_21111586_DEL [dm6]	TCCAC	T	3.024e^-4	0.731	INTRON Nhe2
X	14266210	X_14266210_SNP [dm3] X_14372177_SNP [dm6]	T	C	3.024e^-4	0.731	INTRON dpr8
3R	13061189	3R_13061189_SNP [dm3] 3R_17235467_SNP [dm6]	G	T	3.026e^-4	0.731	INTRON beat-IIb
3L	20979911	3L_20979911_DEL [dm3] 3L_20986811_DEL [dm6]	CGACACGCGGCCGACGAGAG...	C	3.030e^-4	0.731	INTERGENIC
3L	17204336	3L_17204336_DEL [dm3] 3L_17211236_DEL [dm6]	CCTGATTTC	C	3.035e^-4	0.731	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12313442	3L_12313442_SNP [dm3] 3L_12320342_SNP [dm6]	T	C	3.039e^-4	0.731	INTERGENIC
2L	18910259	2L_18910259_SNP [dm3] 2L_18910259_SNP [dm6]	C	A	3.042e^-4	0.731	INTERGENIC
X	12936008	X_12936008_SNP [dm3] X_13041975_SNP [dm6]	G	T	3.047e^-4	0.731	INTRON rad
3L	7437973	3L_7437973_SNP [dm3] 3L_7444873_SNP [dm6]	C	T	3.055e^-4	0.731	INTRON CG42458
2R	19999759	2R_19999759_SNP [dm3] 2R_24112236_SNP [dm6]	G	A	3.059e^-4	0.731	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15638809	3L_15638809_SNP [dm3] 3L_15645709_SNP [dm6]	A	T	3.064e^-4	0.731	INTRON comm3
2L	20325958	2L_20325958_SNP [dm3] 2L_20325958_SNP [dm6]	G	T	3.074e^-4	0.731	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4872414	3L_4872414_SNP [dm3] 3L_4872414_SNP [dm6]	A	G	3.074e^-4	0.731	NON_SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7640580	3L_7640580_SNP [dm3] 3L_7647480_SNP [dm6]	G	A	3.080e^-4	0.731	INTERGENIC
3L	7641233	3L_7641233_INS [dm3] 3L_7648133_INS [dm6]	T	ACA	3.080e^-4	0.731	INTERGENIC
3R	14421337	3R_14421337_SNP [dm3] 3R_18595615_SNP [dm6]	A	C	3.081e^-4	0.731	SYNONYMOUS_CODING CG14304 INTRON qin & 1 other
3R	11519825	3R_11519825_SNP [dm3] 3R_15694103_SNP [dm6]	C	A	3.084e^-4	0.731	UTR_3_PRIME CG31446
3L	1931864	3L_1931864_SNP [dm3] 3L_1931864_SNP [dm6]	G	A	3.088e^-4	0.731	INTRON Dbx
3L	821262	3L_821262_SNP [dm3] 3L_821262_SNP [dm6]	C	A	3.090e^-4	0.731	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	569508	3L_569508_SNP [dm3] 3L_569508_SNP [dm6]	G	T	3.095e^-4	0.731	INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	19974406	X_19974406_SNP [dm3] X_20080373_SNP [dm6]	G	T	3.095e^-4	0.731	INTERGENIC
2R	4499543	2R_4499543_SNP [dm3] 2R_8612038_SNP [dm6]	G	A	3.095e^-4	0.731	STOP_GAINED CG8642 UTR_3_PRIME rgr DOWNSTREAM rgr
2R	10365464	2R_10365464_SNP [dm3] 2R_14477959_SNP [dm6]	G	A	3.098e^-4	0.731	DOWNSTREAM CR44462 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6626983	2R_6626983_SNP [dm3] 2R_10739478_SNP [dm6]	G	A	3.099e^-4	0.731	SYNONYMOUS_CODING Mat1 DOWNSTREAM CG33144	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2523234	3L_2523234_SNP [dm3] 3L_2523234_SNP [dm6]	T	G	3.100e^-4	0.731	INTRON Spn
3R	4741426	3R_4741426_INS [dm3] 3R_8915704_INS [dm6]	A	AA	3.109e^-4	0.732	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8297829	X_8297829_SNP [dm3] X_8403796_SNP [dm6]	C	G	3.115e^-4	0.732	UTR_3_PRIME CG10555 DOWNSTREAM CG11190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8068951	3L_8068951_SNP [dm3] 3L_8075851_SNP [dm6]	A	T	3.115e^-4	0.732	INTRON Ect4
3R	21030781	3R_21030781_SNP [dm3] 3R_25205059_SNP [dm6]	G	A	3.122e^-4	0.732	INTRON CG13654 & 1 other
2L	12076614	2L_12076614_SNP [dm3] 2L_12076614_SNP [dm6]	G	C	3.131e^-4	0.732	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12076618	2L_12076618_DEL [dm3] 2L_12076618_DEL [dm6]	AT	C	3.131e^-4	0.732	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13395058	3R_13395058_SNP [dm3] 3R_17569336_SNP [dm6]	G	C	3.134e^-4	0.732	DOWNSTREAM Hmx INTERGENIC
3L	4871907	3L_4871907_SNP [dm3] 3L_4871907_SNP [dm6]	A	C	3.144e^-4	0.732	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	5521648	3L_5521648_SNP [dm3] 3L_5528548_SNP [dm6]	T	C	3.144e^-4	0.732	INTRON Lkr
2R	10170147	2R_10170147_SNP [dm3] 2R_14282642_SNP [dm6]	T	A	3.147e^-4	0.732	INTRON Ih
X	14266222	X_14266222_SNP [dm3] X_14372189_SNP [dm6]	A	T	3.148e^-4	0.732	INTRON dpr8
3L	21968394	3L_21968394_SNP [dm3] 3L_21975294_SNP [dm6]	C	A	3.149e^-4	0.732	INTRON CG7470
3R	10498683	3R_10498683_SNP [dm3] 3R_14672961_SNP [dm6]	G	C	3.160e^-4	0.732	INTRON Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	18590217	3R_18590217_SNP [dm3] 3R_22764495_SNP [dm6]	G	C	3.161e^-4	0.732	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14665683	3L_14665683_SNP [dm3] 3L_14672583_SNP [dm6]	A	T	3.162e^-4	0.732	UPSTREAM ome & 1 other DOWNSTREAM dlp INTERGENIC	TF binding site mE1_TFBS_Trl
2R	3105252	2R_3105252_SNP [dm3] 2R_7217747_SNP [dm6]	T	A	3.166e^-4	0.732	INTRON pk	TF binding site mE1_TFBS_cad
2R	7604381	2R_7604381_SNP [dm3] 2R_11716876_SNP [dm6]	T	A	3.183e^-4	0.734	INTRON pyr	TF binding site BDTNP1_TFBS_dl
3L	4872356	3L_4872356_SNP [dm3] 3L_4872356_SNP [dm6]	G	A	3.184e^-4	0.734	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14754926	2L_14754926_SNP [dm3] 2L_14754926_SNP [dm6]	A	G	3.186e^-4	0.734	INTERGENIC
2L	12076910	2L_12076910_SNP [dm3] 2L_12076910_SNP [dm6]	A	T	3.191e^-4	0.734	NON_SYNONYMOUS_CODING CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5917882	3L_5917882_SNP [dm3] 3L_5924782_SNP [dm6]	A	G	3.194e^-4	0.734	INTRON Vap-33B
2L	20393398	2L_20393398_SNP [dm3] 2L_20393398_SNP [dm6]	A	T	3.196e^-4	0.734	INTRON CG10947
2R	20747504	2R_20747504_SNP [dm3] 2R_24859981_SNP [dm6]	T	C	3.209e^-4	0.735	EXON CR44829
X	10798960	X_10798960_SNP [dm3] X_10904927_SNP [dm6]	G	A	3.216e^-4	0.735	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20038022	2L_20038022_INS [dm3] 2L_20038022_INS [dm6]	G	GGGT	3.218e^-4	0.735	INTRON sNPF
3L	2857227	3L_2857227_SNP [dm3] 3L_2857227_SNP [dm6]	A	G	3.232e^-4	0.735	INTRON CG43444
3R	8099021	3R_8099021_SNP [dm3] 3R_12273299_SNP [dm6]	C	T	3.243e^-4	0.735	SYNONYMOUS_CODING Sfp87B INTRON svp
3L	12305980	3L_12305980_SNP [dm3] 3L_12312880_SNP [dm6]	T	A	3.246e^-4	0.735	DOWNSTREAM CG44355 INTERGENIC
2L	2714348	2L_2714348_SNP [dm3] 2L_2714348_SNP [dm6]	G	A	3.256e^-4	0.735	INTRON CG31690
3L	4872039	3L_4872039_SNP [dm3] 3L_4872039_SNP [dm6]	T	C	3.259e^-4	0.735	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7636042	2R_7636042_SNP [dm3] 2R_11748537_SNP [dm6]	T	G	3.264e^-4	0.735	INTERGENIC
X	17561126	X_17561126_SNP [dm3] X_17667093_SNP [dm6]	G	A	3.264e^-4	0.735	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25523257	3R_25523257_SNP [dm3] 3R_29697535_SNP [dm6]	G	A	3.266e^-4	0.735	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3552856	2L_3552856_SNP [dm3] 2L_3552856_SNP [dm6]	T	C	3.269e^-4	0.735	INTERGENIC
X	10051883	X_10051883_SNP [dm3] X_10157850_SNP [dm6]	G	C	3.270e^-4	0.735	UPSTREAM CG43902 INTRON CR44894
2R	3327576	2R_3327576_SNP [dm3] 2R_7440071_SNP [dm6]	A	T	3.272e^-4	0.735	UPSTREAM CG11123 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12705316	3L_12705316_SNP [dm3] 3L_12712216_SNP [dm6]	T	A	3.273e^-4	0.735	INTERGENIC
3L	3866285	3L_3866285_SNP [dm3] 3L_3866285_SNP [dm6]	G	A	3.275e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15669881	2R_15669881_SNP [dm3] 2R_19782376_SNP [dm6]	A	G	3.275e^-4	0.735	INTERGENIC
X	10863167	X_10863167_SNP [dm3] X_10969134_SNP [dm6]	C	A	3.287e^-4	0.735	NON_SYNONYMOUS_CODING CG42339
3L	10659767	3L_10659767_SNP [dm3] 3L_10666667_SNP [dm6]	C	G	3.291e^-4	0.735	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20949476	3L_20949476_SNP [dm3] 3L_20956376_SNP [dm6]	A	G	3.300e^-4	0.735	SYNONYMOUS_CODING Sems UPSTREAM CG10588
3R	14112527	3R_14112527_SNP [dm3] 3R_18286805_SNP [dm6]	T	G	3.307e^-4	0.735	UTR_3_PRIME CG7131 DOWNSTREAM CG8064
3L	2711053	3L_2711053_SNP [dm3] 3L_2711053_SNP [dm6]	T	G	3.309e^-4	0.735	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11533986	3R_11533986_INS [dm3] 3R_15708264_INS [dm6]	A	ACATATGTAAGA...	3.316e^-4	0.735	UTR_3_PRIME CG5404
X	4689574	X_4689574_SNP [dm3] X_4795541_SNP [dm6]	C	A	3.318e^-4	0.735	INTERGENIC
X	12331688	X_12331688_SNP [dm3] X_12437655_SNP [dm6]	A	C	3.326e^-4	0.735	INTRON Pkcdelta
3R	4743210	3R_4743210_SNP [dm3] 3R_8917488_SNP [dm6]	C	T	3.338e^-4	0.735	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14152532	2R_14152532_SNP [dm3] 2R_18265027_SNP [dm6]	G	C	3.338e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_cad
X	18239861	X_18239861_SNP [dm3] X_18345828_SNP [dm6]	C	T	3.345e^-4	0.735	INTRON CG6123
3R	12396134	3R_12396134_SNP [dm3] 3R_16570412_SNP [dm6]	A	G	3.348e^-4	0.735	UTR_3_PRIME CG42342 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15940813	2R_15940813_SNP [dm3] 2R_20053308_SNP [dm6]	G	A	3.354e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	10155305	2R_10155305_SNP [dm3] 2R_14267800_SNP [dm6]	T	A	3.360e^-4	0.735	UTR_5_PRIME CG8547 UPSTREAM CG8547 DOWNSTREAM SelD	TF binding site mE1_TFBS_Trl
3L	15112397	3L_15112397_SNP [dm3] 3L_15119297_SNP [dm6]	A	G	3.364e^-4	0.735	NON_SYNONYMOUS_CODING Cep135 DOWNSTREAM CG16959	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11883718	2L_11883718_SNP [dm3] 2L_11883718_SNP [dm6]	C	T	3.369e^-4	0.735	INTRON Pde1c
X	10051906	X_10051906_SNP [dm3] X_10157873_SNP [dm6]	T	A	3.370e^-4	0.735	UPSTREAM CG43902 INTRON CR44894
2L	21112099	2L_21112099_SNP [dm3] 2L_21112099_SNP [dm6]	A	G	3.371e^-4	0.735	INTRON Nhe2
3R	18590337	3R_18590337_SNP [dm3] 3R_22764615_SNP [dm6]	C	A	3.378e^-4	0.735	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3434707	2L_3434707_SNP [dm3] 2L_3434707_SNP [dm6]	A	C	3.409e^-4	0.735	INTERGENIC
3L	3702841	3L_3702841_SNP [dm3] 3L_3702841_SNP [dm6]	T	A	3.412e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6864027	2R_6864027_SNP [dm3] 2R_10976522_SNP [dm6]	C	T	3.414e^-4	0.735	INTERGENIC
2L	20123089	2L_20123089_SNP [dm3] 2L_20123089_SNP [dm6]	G	C	3.416e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4850581	3R_4850581_SNP [dm3] 3R_9024859_SNP [dm6]	T	C	3.420e^-4	0.735	DOWNSTREAM CR31429 INTRON neur	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18830914	2R_18830914_SNP [dm3] 2R_22943391_SNP [dm6]	A	C	3.421e^-4	0.735	SYNONYMOUS_CODING CG42694
2R	10816489	2R_10816489_SNP [dm3] 2R_14928984_SNP [dm6]	C	T	3.421e^-4	0.735	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10555424	3L_10555424_SNP [dm3] 3L_10562324_SNP [dm6]	T	A	3.425e^-4	0.735	INTRON A2bp1
2L	19843558	2L_19843558_SNP [dm3] 2L_19843558_SNP [dm6]	G	A	3.429e^-4	0.735	INTRON sick
2R	7226166	2R_7226166_SNP [dm3] 2R_11338661_SNP [dm6]	C	A	3.434e^-4	0.735	NON_SYNONYMOUS_CODING kappaTry DOWNSTREAM lambdaTry & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18630232	3R_18630232_SNP [dm3] 3R_22804510_SNP [dm6]	A	G	3.441e^-4	0.735	INTRON CG7031
2R	19678862	2R_19678862_SNP [dm3] 2R_23791339_SNP [dm6]	A	G	3.443e^-4	0.735	UPSTREAM CG15800 INTRON CG9850
2R	4011635	2R_4011635_SNP [dm3] 2R_8124130_SNP [dm6]	C	T	3.444e^-4	0.735	SYNONYMOUS_CODING Nup50 DOWNSTREAM coil	TF binding site mE1_TFBS_sens
2R	4011911	2R_4011911_SNP [dm3] 2R_8124406_SNP [dm6]	G	T	3.444e^-4	0.735	NON_SYNONYMOUS_CODING Nup50 DOWNSTREAM coil
2R	4021779	2R_4021779_SNP [dm3] 2R_8134274_SNP [dm6]	G	T	3.444e^-4	0.735	UTR_3_PRIME Pabp2 & 1 other DOWNSTREAM Obp44a & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18536425	2R_18536425_INS [dm3] 2R_22648920_INS [dm6]	T	TTTATTGAAATGTACT...	3.448e^-4	0.735	UPSTREAM CG34445 DOWNSTREAM CG3746 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7575952	X_7575952_INS [dm3] X_7681919_INS [dm6]	G	TATAAAT	3.449e^-4	0.735	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
X	18242877	X_18242877_SNP [dm3] X_18348844_SNP [dm6]	C	G	3.451e^-4	0.735	INTRON CG6123
X	18243266	X_18243266_SNP [dm3] X_18349233_SNP [dm6]	T	C	3.451e^-4	0.735	INTRON CG6123
3L	5360340	3L_5360340_SNP [dm3] 3L_5367240_SNP [dm6]	G	A	3.456e^-4	0.735	SYNONYMOUS_CODING Membrin DOWNSTREAM CG10635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	20787820	3R_20787820_MNP [dm3] 3R_24962098_MNP [dm6]	TTA	GAT	3.458e^-4	0.735	INTERGENIC
3L	12846375	3L_12846375_SNP [dm3] 3L_12853275_SNP [dm6]	G	T	3.458e^-4	0.735	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
2R	18129416	2R_18129416_SNP [dm3] 2R_22241911_SNP [dm6]	A	G	3.461e^-4	0.735	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
2R	19972742	2R_19972742_SNP [dm3] 2R_24085219_SNP [dm6]	A	G	3.462e^-4	0.735	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
3L	13669578	3L_13669578_SNP [dm3] 3L_13676478_SNP [dm6]	G	T	3.468e^-4	0.735	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	5937260	3L_5937260_SNP [dm3] 3L_5944160_SNP [dm6]	C	G	3.475e^-4	0.735	INTRON CG33993
3R	6901393	3R_6901393_SNP [dm3] 3R_11075671_SNP [dm6]	G	A	3.492e^-4	0.735	INTERGENIC
3L	9988171	3L_9988171_SNP [dm3] 3L_9995071_SNP [dm6]	G	A	3.503e^-4	0.735	INTRON dpr6
3R	20886275	3R_20886275_DEL [dm3] 3R_25060553_DEL [dm6]	AGTCTTGA	A	3.511e^-4	0.735	SPLICE_SITE_REGION Unc-13-4B INTRON Unc-13-4B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18644137	2R_18644137_SNP [dm3] 2R_22756632_SNP [dm6]	T	G	3.512e^-4	0.735	DOWNSTREAM CG13526 INTRON CG42260 & 1 other
3R	11528524	3R_11528524_SNP [dm3] 3R_15702802_SNP [dm6]	A	C	3.538e^-4	0.735	INTERGENIC
2R	3848480	2R_3848480_SNP [dm3] 2R_7960975_SNP [dm6]	G	C	3.539e^-4	0.735	SYNONYMOUS_CODING Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	4831458	2R_4831458_SNP [dm3] 2R_8943953_SNP [dm6]	G	C	3.541e^-4	0.735	DOWNSTREAM CG8230 EXON CR44274
X	18243978	X_18243978_SNP [dm3] X_18349945_SNP [dm6]	A	C	3.546e^-4	0.735	INTRON CG6123
2R	3327530	2R_3327530_SNP [dm3] 2R_7440025_SNP [dm6]	A	G	3.549e^-4	0.735	UPSTREAM CG11123 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7654551	2R_7654551_SNP [dm3] 2R_11767046_SNP [dm6]	C	G	3.552e^-4	0.735	INTRON ths
3R	8099276	3R_8099276_SNP [dm3] 3R_12273554_SNP [dm6]	A	T	3.554e^-4	0.735	DOWNSTREAM Sfp87B INTRON svp
3L	19288739	3L_19288739_SNP [dm3] 3L_19295639_SNP [dm6]	T	G	3.560e^-4	0.735	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22262113	2L_22262113_SNP [dm3] 2L_22262113_SNP [dm6]	A	T	3.563e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	9675879	3R_9675879_SNP [dm3] 3R_13850157_SNP [dm6]	C	T	3.564e^-4	0.735	INTERGENIC
2L	20421603	2L_20421603_SNP [dm3] 2L_20421603_SNP [dm6]	G	T	3.571e^-4	0.735	UPSTREAM snoRNA:Psi18S-525i & 2 others DOWNSTREAM snoRNA:Psi18S-640e & 2 others INTRON Arpc2
2L	3463115	2L_3463115_SNP [dm3] 2L_3463115_SNP [dm6]	A	C	3.572e^-4	0.735	UTR_3_PRIME msl-2 DOWNSTREAM mir-4971
2R	19668156	2R_19668156_SNP [dm3] 2R_23780633_SNP [dm6]	C	G	3.572e^-4	0.735	INTRON CG9850
3R	11457004	3R_11457004_SNP [dm3] 3R_15631282_SNP [dm6]	C	G	3.574e^-4	0.735	INTERGENIC
X	7918956	X_7918956_INS [dm3] X_8024923_INS [dm6]	C	CC	3.579e^-4	0.735	INTRON Tbh
X	13128813	X_13128813_SNP [dm3] X_13234780_SNP [dm6]	A	T	3.585e^-4	0.735	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	5658198	3R_5658198_SNP [dm3] 3R_9832476_SNP [dm6]	A	G	3.591e^-4	0.735	INTRON Teh1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18481985	3R_18481985_SNP [dm3] 3R_22656263_SNP [dm6]	G	A	3.592e^-4	0.735	INTRON CG45058
X	2522462	X_2522462_SNP [dm3] X_2628429_SNP [dm6]	G	A	3.595e^-4	0.735	SYNONYMOUS_CODING PI4KIIIalpha
2R	16738843	2R_16738843_SNP [dm3] 2R_20851338_SNP [dm6]	G	A	3.595e^-4	0.735	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_sens
3R	11541221	3R_11541221_SNP [dm3] 3R_15715499_SNP [dm6]	G	C	3.597e^-4	0.735	DOWNSTREAM CG31294 INTERGENIC
3R	808719	3R_808719_SNP [dm3] 3R_4982997_SNP [dm6]	G	C	3.598e^-4	0.735	NON_SYNONYMOUS_CODING CG14662 EXON CR43478	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10417996	2R_10417996_DEL [dm3] 2R_14530491_DEL [dm6]	TCATATTCTTAA...	T	3.604e^-4	0.735	INTRON ttv
2R	10418031	2R_10418031_SNP [dm3] 2R_14530526_SNP [dm6]	G	T	3.604e^-4	0.735	INTRON ttv
X	6539242	X_6539242_SNP [dm3] X_6645209_SNP [dm6]	A	T	3.605e^-4	0.735	SYNONYMOUS_CODING pigs
3R	11533976	3R_11533976_SNP [dm3] 3R_15708254_SNP [dm6]	G	A	3.609e^-4	0.735	UTR_3_PRIME CG5404
3L	14350696	3L_14350696_SNP [dm3] 3L_14357596_SNP [dm6]	T	G	3.609e^-4	0.735	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11042504	X_11042504_SNP [dm3] X_11148471_SNP [dm6]	T	A	3.612e^-4	0.735	UPSTREAM Lint-1 INTRON Ran	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6231292	2R_6231292_SNP [dm3] 2R_10343787_SNP [dm6]	C	A	3.613e^-4	0.735	INTRON CG42732
3L	13903924	3L_13903924_SNP [dm3] 3L_13910824_SNP [dm6]	C	T	3.614e^-4	0.735	INTRON Rgl
3L	12829334	3L_12829334_SNP [dm3] 3L_12836234_SNP [dm6]	A	G	3.620e^-4	0.735	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11350151	3R_11350151_SNP [dm3] 3R_15524429_SNP [dm6]	T	C	3.622e^-4	0.735	INTERGENIC
3R	21392543	3R_21392543_SNP [dm3] 3R_25566821_SNP [dm6]	C	T	3.625e^-4	0.735	INTRON msi
3L	5490107	3L_5490107_DEL [dm3] 3L_5497007_DEL [dm6]	GG	G	3.628e^-4	0.735	DOWNSTREAM blanks INTERGENIC
3R	21259498	3R_21259498_INS [dm3] 3R_25433776_INS [dm6]	A	AA	3.630e^-4	0.735	INTRON Fur1
2R	13574157	2R_13574157_SNP [dm3] 2R_17686652_SNP [dm6]	T	C	3.632e^-4	0.735	UPSTREAM HPS4 DOWNSTREAM CG42562 INTRON HPS4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22186031	3R_22186031_SNP [dm3] 3R_26360309_SNP [dm6]	C	A	3.633e^-4	0.735	INTRON CG33970
3L	10656305	3L_10656305_SNP [dm3] 3L_10663205_SNP [dm6]	G	A	3.633e^-4	0.735	UPSTREAM CG32068 DOWNSTREAM CG8003 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3R	20787829	3R_20787829_DEL [dm3] 3R_24962107_DEL [dm6]	TTCC	T	3.633e^-4	0.735	INTERGENIC
X	8702802	X_8702802_SNP [dm3] X_8808769_SNP [dm6]	A	T	3.635e^-4	0.735	INTERGENIC
2L	11703405	2L_11703405_SNP [dm3] 2L_11703405_SNP [dm6]	T	A	3.636e^-4	0.735	INTERGENIC
2R	4007060	2R_4007060_SNP [dm3] 2R_8119555_SNP [dm6]	T	C	3.638e^-4	0.735	SYNONYMOUS_CODING Asap
2R	18127337	2R_18127337_SNP [dm3] 2R_22239832_SNP [dm6]	C	T	3.642e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10147104	X_10147104_SNP [dm3] X_10253071_SNP [dm6]	G	A	3.656e^-4	0.735	INTRON Hk
2R	14152608	2R_14152608_SNP [dm3] 2R_18265103_SNP [dm6]	T	C	3.665e^-4	0.735	INTERGENIC
X	3872380	X_3872380_SNP [dm3] X_3978347_SNP [dm6]	A	T	3.666e^-4	0.735	INTERGENIC
2L	20317077	2L_20317077_SNP [dm3] 2L_20317077_SNP [dm6]	A	T	3.668e^-4	0.735	INTRON spir & 1 other
3R	11533966	3R_11533966_SNP [dm3] 3R_15708244_SNP [dm6]	A	T	3.672e^-4	0.735	UTR_3_PRIME CG5404
3R	11533984	3R_11533984_SNP [dm3] 3R_15708262_SNP [dm6]	G	C	3.672e^-4	0.735	UTR_3_PRIME CG5404
2R	10367797	2R_10367797_SNP [dm3] 2R_14480292_SNP [dm6]	T	G	3.673e^-4	0.735	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
3R	19705496	3R_19705496_SNP [dm3] 3R_23879774_SNP [dm6]	T	A	3.675e^-4	0.735	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4188151	3L_4188151_SNP [dm3] 3L_4188151_SNP [dm6]	G	A	3.676e^-4	0.735	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5880851	2R_5880851_SNP [dm3] 2R_9993346_SNP [dm6]	G	T	3.683e^-4	0.735	UTR_3_PRIME TER94 DOWNSTREAM Pka-R2	TF binding site mE1_TFBS_cad
3L	8243419	3L_8243419_SNP [dm3] 3L_8250319_SNP [dm6]	T	G	3.685e^-4	0.735	INTRON Dscam4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12822073	3L_12822073_DEL [dm3] 3L_12828973_DEL [dm6]	TTC	T	3.694e^-4	0.735	INTRON CG10960
3R	19740116	3R_19740116_SNP [dm3] 3R_23914394_SNP [dm6]	A	T	3.698e^-4	0.735	INTRON sba	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	24978492	3R_24978492_SNP [dm3] 3R_29152770_SNP [dm6]	C	T	3.700e^-4	0.735	SYNONYMOUS_CODING Slbp UPSTREAM ligatin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	9858036	X_9858036_SNP [dm3] X_9964003_SNP [dm6]	G	A	3.704e^-4	0.735	SYNONYMOUS_CODING CG1791
X	5440136	X_5440136_SNP [dm3] X_5546103_SNP [dm6]	C	T	3.705e^-4	0.735	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	14658079	3R_14658079_SNP [dm3] 3R_18832357_SNP [dm6]	C	A	3.710e^-4	0.735	INTRON CG18208
2R	19979079	2R_19979079_SNP [dm3] 2R_24091556_SNP [dm6]	G	C	3.712e^-4	0.735	SYNONYMOUS_CODING snama DOWNSTREAM gek
3R	8097461	3R_8097461_SNP [dm3] 3R_12271739_SNP [dm6]	G	A	3.714e^-4	0.735	DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_inv
3L	11814789	3L_11814789_SNP [dm3] 3L_11821689_SNP [dm6]	T	C	3.717e^-4	0.735	UTR_5_PRIME CG11597 INTRON CG5946 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	5931106	2R_5931106_SNP [dm3] 2R_10043601_SNP [dm6]	C	T	3.722e^-4	0.735	UPSTREAM CR44295 & 1 other INTRON oys
3R	18955715	3R_18955715_SNP [dm3] 3R_23129993_SNP [dm6]	C	T	3.728e^-4	0.735	INTRON hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11847935	2R_11847935_SNP [dm3] 2R_15960430_SNP [dm6]	A	G	3.740e^-4	0.735	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18630235	3R_18630235_SNP [dm3] 3R_22804513_SNP [dm6]	A	T	3.740e^-4	0.735	INTRON CG7031
3R	6009061	3R_6009061_SNP [dm3] 3R_10183339_SNP [dm6]	T	C	3.740e^-4	0.735	INTRON CG12814
3L	7144216	3L_7144216_SNP [dm3] 3L_7151116_SNP [dm6]	G	T	3.742e^-4	0.735	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21675985	3R_21675985_SNP [dm3] 3R_25850263_SNP [dm6]	C	T	3.749e^-4	0.735	DOWNSTREAM CG14545 INTERGENIC
X	22182384	X_22182384_SNP [dm3] X_22780548_SNP [dm6]	A	C	3.756e^-4	0.735	INTRON CR44997	transposable element FlyBase
3L	13004774	3L_13004774_SNP [dm3] 3L_13011674_SNP [dm6]	C	A	3.757e^-4	0.735	UTR_5_PRIME CG11261 DOWNSTREAM MICAL-like
3R	4719924	3R_4719924_SNP [dm3] 3R_8894202_SNP [dm6]	A	T	3.763e^-4	0.735	INTRON pyd	TF binding site mE1_TFBS_Trl
2R	20747249	2R_20747249_SNP [dm3] 2R_24859726_SNP [dm6]	C	T	3.763e^-4	0.735	EXON CR44829
3L	515275	3L_515275_SNP [dm3] 3L_515275_SNP [dm6]	T	C	3.767e^-4	0.735	INTRON klar
2R	10170172	2R_10170172_SNP [dm3] 2R_14282667_SNP [dm6]	T	A	3.774e^-4	0.735	INTRON Ih
2L	10790968	2L_10790968_SNP [dm3] 2L_10790968_SNP [dm6]	G	C	3.776e^-4	0.735	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
2L	10381883	2L_10381883_SNP [dm3] 2L_10381883_SNP [dm6]	A	C	3.777e^-4	0.735	UTR_3_PRIME gny UPSTREAM CG5096 DOWNSTREAM gny
X	12567729	X_12567729_SNP [dm3] X_12673696_SNP [dm6]	G	A	3.778e^-4	0.735	INTRON Tis11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	8267495	3L_8267495_INS [dm3] 3L_8274395_INS [dm6]	T	TCCACATCCACATCCACAT...	3.779e^-4	0.735	INTRON Dscam4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	7575845	X_7575845_SNP [dm3] X_7681812_SNP [dm6]	A	C	3.779e^-4	0.735	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
2R	19984272	2R_19984272_SNP [dm3] 2R_24096749_SNP [dm6]	T	A	3.783e^-4	0.735	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18467941	2R_18467941_SNP [dm3] 2R_22580436_SNP [dm6]	G	A	3.796e^-4	0.736	INTRON dnr1
3L	14705950	3L_14705950_SNP [dm3] 3L_14712850_SNP [dm6]	G	A	3.797e^-4	0.736	INTRON ome	TF binding site mE1_TFBS_HSA
2L	13976705	2L_13976705_SNP [dm3] 2L_13976705_SNP [dm6]	A	C	3.799e^-4	0.736	START_GAINED NimC1 UTR_5_PRIME NimC1 UPSTREAM NimC1 & 1 other
2L	13339688	2L_13339688_SNP [dm3] 2L_13339688_SNP [dm6]	A	T	3.815e^-4	0.737	INTERGENIC
2R	3322383	2R_3322383_SNP [dm3] 2R_7434878_SNP [dm6]	C	T	3.824e^-4	0.737	DOWNSTREAM so INTERGENIC
2L	20223364	2L_20223364_SNP [dm3] 2L_20223364_SNP [dm6]	C	G	3.825e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11529937	3R_11529937_INS [dm3] 3R_15704215_INS [dm6]	GT	ACAAG	3.826e^-4	0.737	UPSTREAM CG5404 INTERGENIC
2L	5353528	2L_5353528_SNP [dm3] 2L_5353528_SNP [dm6]	G	A	3.830e^-4	0.737	INTRON nompC
2R	5910451	2R_5910451_SNP [dm3] 2R_10022946_SNP [dm6]	C	T	3.834e^-4	0.737	INTRON Pka-R2	transposable element FlyBase
2R	16918937	2R_16918937_SNP [dm3] 2R_21031432_SNP [dm6]	G	T	3.835e^-4	0.737	INTERGENIC
X	9444004	X_9444004_SNP [dm3] X_9549971_SNP [dm6]	C	G	3.835e^-4	0.737	INTRON CG32700
2R	19982286	2R_19982286_SNP [dm3] 2R_24094763_SNP [dm6]	G	A	3.853e^-4	0.739	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10816446	2R_10816446_SNP [dm3] 2R_14928941_SNP [dm6]	A	G	3.871e^-4	0.739	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5939564	3L_5939564_SNP [dm3] 3L_5946464_SNP [dm6]	G	C	3.871e^-4	0.739	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2R	6329655	2R_6329655_INS [dm3] 2R_10442150_INS [dm6]	C	CC	3.871e^-4	0.739	INTRON Galphao
2L	17357386	2L_17357386_SNP [dm3] 2L_17357386_SNP [dm6]	G	C	3.876e^-4	0.739	INTERGENIC
2L	10825100	2L_10825100_SNP [dm3] 2L_10825100_SNP [dm6]	G	C	3.877e^-4	0.739	INTRON Nos
3L	1392230	3L_1392230_SNP [dm3] 3L_1392230_SNP [dm6]	A	T	3.878e^-4	0.739	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8068973	3L_8068973_SNP [dm3] 3L_8075873_SNP [dm6]	G	A	3.894e^-4	0.739	INTRON Ect4
X	18242550	X_18242550_INS [dm3] X_18348517_INS [dm6]	C	AA	3.904e^-4	0.739	INTRON CG6123
3R	22295861	3R_22295861_SNP [dm3] 3R_26470139_SNP [dm6]	T	A	3.917e^-4	0.739	UTR_3_PRIME plum DOWNSTREAM CG5455 & 1 other
2L	13730630	2L_13730630_SNP [dm3] 2L_13730630_SNP [dm6]	G	A	3.927e^-4	0.739	INTERGENIC
3R	20787800	3R_20787800_INS [dm3] 3R_24962078_INS [dm6]	A	AGCA	3.944e^-4	0.739	INTERGENIC
3R	20787802	3R_20787802_MNP [dm3] 3R_24962080_MNP [dm6]	TGGG	ACCC	3.944e^-4	0.739	INTERGENIC
3R	20787808	3R_20787808_MNP [dm3] 3R_24962086_MNP [dm6]	ATT	TGG	3.944e^-4	0.739	INTERGENIC
2L	13339652	2L_13339652_INS [dm3] 2L_13339652_INS [dm6]	T	TTCTAT	3.954e^-4	0.739	INTERGENIC
3R	4717976	3R_4717976_SNP [dm3] 3R_8892254_SNP [dm6]	T	C	3.957e^-4	0.739	INTRON pyd
3R	11425306	3R_11425306_SNP [dm3] 3R_15599584_SNP [dm6]	G	C	3.957e^-4	0.739	INTERGENIC
3L	17392984	3L_17392984_SNP [dm3] 3L_17399884_SNP [dm6]	T	A	3.965e^-4	0.739	DOWNSTREAM noe INTRON blot
3R	24942028	3R_24942028_SNP [dm3] 3R_29116306_SNP [dm6]	A	T	3.966e^-4	0.739	UPSTREAM Atg14 DOWNSTREAM CG11876 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	2748131	3R_2748131_DEL [dm3] 3R_6922409_DEL [dm6]	AA	A	3.968e^-4	0.739	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11861817	2L_11861817_SNP [dm3] 2L_11861817_SNP [dm6]	A	G	3.970e^-4	0.739	INTRON Pde1c
X	14798232	X_14798232_SNP [dm3] X_14904199_SNP [dm6]	G	A	3.971e^-4	0.739	SYNONYMOUS_CODING CG9512 INTRON Flo2
3L	12846274	3L_12846274_SNP [dm3] 3L_12853174_SNP [dm6]	C	A	3.972e^-4	0.739	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3R	11529067	3R_11529067_SNP [dm3] 3R_15703345_SNP [dm6]	C	T	3.977e^-4	0.739	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

mn_StarvationRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results