DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.204e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2536 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	17735436	3R_17735436_SNP [dm3] 3R_21909714_SNP [dm6]	T	A	1.207e^-6	0.522	INTERGENIC
3L	9735257	3L_9735257_SNP [dm3] 3L_9742157_SNP [dm6]	C	T	1.281e^-6	0.522	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19367803	3L_19367803_SNP [dm3] 3L_19374703_SNP [dm6]	C	A	1.520e^-6	0.522	INTRON CG32206
3L	8820796	3L_8820796_SNP [dm3] 3L_8827696_SNP [dm6]	A	G	1.587e^-6	0.522	UTR_5_PRIME dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19646551	2R_19646551_SNP [dm3] 2R_23759028_SNP [dm6]	G	A	2.160e^-6	0.522	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19425737	2L_19425737_SNP [dm3] 2L_19425737_SNP [dm6]	A	G	2.196e^-6	0.522	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8820797	3L_8820797_SNP [dm3] 3L_8827697_SNP [dm6]	G	A	2.197e^-6	0.522	UTR_5_PRIME dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14899269	3R_14899269_SNP [dm3] 3R_19073547_SNP [dm6]	G	A	2.738e^-6	0.522	INTRON cdi	TF binding site mE1_TFBS_chinmo
2L	7900584	2L_7900584_SNP [dm3] 2L_7900584_SNP [dm6]	G	A	2.781e^-6	0.522	INTRON Snoo
2R	12811296	2R_12811296_SNP [dm3] 2R_16923791_SNP [dm6]	C	T	2.928e^-6	0.522	UPSTREAM Pkc53E INTERGENIC
2L	7900587	2L_7900587_DEL [dm3] 2L_7900587_DEL [dm6]	GG	G	3.063e^-6	0.522	INTRON Snoo
2L	7900235	2L_7900235_SNP [dm3] 2L_7900235_SNP [dm6]	C	G	3.399e^-6	0.531	INTRON Snoo
3R	21296904	3R_21296904_SNP [dm3] 3R_25471182_SNP [dm6]	T	C	4.094e^-6	0.555	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9204647	2R_9204647_SNP [dm3] 2R_13317142_SNP [dm6]	C	T	4.140e^-6	0.555	INTERGENIC
2L	7900933	2L_7900933_DEL [dm3] 2L_7900933_DEL [dm6]	GTATG	G	5.161e^-6	0.582	INTRON Snoo
2L	8451881	2L_8451881_DEL [dm3] 2L_8451881_DEL [dm6]	ATGCTGGAGTGGGAGGAACT...	A	5.462e^-6	0.582	SPLICE_SITE_ACCEPTOR fu12 SPLICE_SITE_REGION fu12 UTR_5_PRIME fu12 UPSTREAM fu12 INTRON fu12
3R	5407984	3R_5407984_SNP [dm3] 3R_9582262_SNP [dm6]	T	C	5.556e^-6	0.582	DOWNSTREAM CG33654 INTRON CG8301
2L	10871446	2L_10871446_SNP [dm3] 2L_10871446_SNP [dm6]	G	T	5.585e^-6	0.582	UPSTREAM CR45454 DOWNSTREAM CG12517 & 1 other INTERGENIC
3R	17735429	3R_17735429_SNP [dm3] 3R_21909707_SNP [dm6]	A	G	6.073e^-6	0.6	INTERGENIC
3R	17735418	3R_17735418_SNP [dm3] 3R_21909696_SNP [dm6]	T	C	6.773e^-6	0.63	INTERGENIC
3L	16582366	3L_16582366_SNP [dm3] 3L_16589266_SNP [dm6]	G	A	7.385e^-6	0.63	SYNONYMOUS_CODING l_3_73Ah DOWNSTREAM tra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	21646506	3L_21646506_SNP [dm3] 3L_21653406_SNP [dm6]	C	T	7.589e^-6	0.63	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	8872899	3L_8872899_SNP [dm3] 3L_8879799_SNP [dm6]	A	T	8.215e^-6	0.63	INTRON dally
X	6207709	X_6207709_SNP [dm3] X_6313676_SNP [dm6]	A	C	8.576e^-6	0.63	INTRON CG15894	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12148435	3R_12148435_SNP [dm3] 3R_16322713_SNP [dm6]	G	C	1.023e^-5	0.63	UPSTREAM CG6901 DOWNSTREAM tRNA:V4:89BC & 1 other INTRON Sulf1
X	2308238	X_2308238_SNP [dm3] X_2414205_SNP [dm6]	G	A	1.048e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	27207706	3R_27207706_SNP [dm3] 3R_31381984_SNP [dm6]	G	A	1.056e^-5	0.63	UPSTREAM CG1607 INTERGENIC
3R	24293837	3R_24293837_SNP [dm3] 3R_28468115_SNP [dm6]	G	A	1.128e^-5	0.63	INTRON beat-VI
3R	20708151	3R_20708151_INS [dm3] 3R_24882429_INS [dm6]	T	TTATATTAT	1.172e^-5	0.63	DOWNSTREAM CG11089 INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17735414	3R_17735414_SNP [dm3] 3R_21909692_SNP [dm6]	A	G	1.183e^-5	0.63	INTERGENIC
2L	18807583	2L_18807583_SNP [dm3] 2L_18807583_SNP [dm6]	G	A	1.183e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11130834	X_11130834_SNP [dm3] X_11236801_SNP [dm6]	G	A	1.187e^-5	0.63	SYNONYMOUS_CODING CG44422
3R	6666930	3R_6666930_SNP [dm3] 3R_10841208_SNP [dm6]	T	C	1.211e^-5	0.63	INTRON Cad86C
3R	9319169	3R_9319169_SNP [dm3] 3R_13493447_SNP [dm6]	T	C	1.215e^-5	0.63	INTERGENIC
2L	13682402	2L_13682402_SNP [dm3] 2L_13682402_SNP [dm6]	T	C	1.218e^-5	0.63	INTRON CG31814
2R	16595342	2R_16595342_SNP [dm3] 2R_20707837_SNP [dm6]	C	A	1.231e^-5	0.63	INTRON dpr	TF binding site mE1_TFBS_HSA
2L	7900683	2L_7900683_DEL [dm3] 2L_7900683_DEL [dm6]	TT	T	1.246e^-5	0.63	INTRON Snoo
2L	6402589	2L_6402589_SNP [dm3] 2L_6402589_SNP [dm6]	G	A	1.276e^-5	0.63	INTRON CG42368	TF binding site mE1_TFBS_chinmo
3R	9824210	3R_9824210_SNP [dm3] 3R_13998488_SNP [dm6]	G	T	1.336e^-5	0.643	INTRON rdx	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	20047281	3L_20047281_SNP [dm3] 3L_20054181_SNP [dm6]	G	C	1.445e^-5	0.67	INTERGENIC
3L	815528	3L_815528_SNP [dm3] 3L_815528_SNP [dm6]	T	C	1.468e^-5	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5129674	3R_5129674_SNP [dm3] 3R_9303952_SNP [dm6]	G	A	1.500e^-5	0.67	INTRON CG8861
2R	11592595	2R_11592595_SNP [dm3] 2R_15705090_SNP [dm6]	C	G	1.578e^-5	0.671	INTERGENIC
2R	19646843	2R_19646843_SNP [dm3] 2R_23759320_SNP [dm6]	C	A	1.603e^-5	0.671	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1785570	3L_1785570_SNP [dm3] 3L_1785570_SNP [dm6]	C	T	1.621e^-5	0.671	SYNONYMOUS_CODING alpha-Spec	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22859884	3R_22859884_SNP [dm3] 3R_27034162_SNP [dm6]	T	G	1.703e^-5	0.671	INTRON RYa-R	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7901213	2L_7901213_SNP [dm3] 2L_7901213_SNP [dm6]	T	C	1.853e^-5	0.671	INTRON Snoo
2L	7900660	2L_7900660_SNP [dm3] 2L_7900660_SNP [dm6]	T	A	1.867e^-5	0.671	INTRON Snoo
X	11519287	X_11519287_SNP [dm3] X_11625254_SNP [dm6]	C	T	1.876e^-5	0.671	INTRON Ptp10D	TF binding site BDTNP1_TFBS_gt
2R	8721270	2R_8721270_SNP [dm3] 2R_12833765_SNP [dm6]	T	G	1.922e^-5	0.671	INTERGENIC
3L	11403076	3L_11403076_DEL [dm3] 3L_11409976_DEL [dm6]	TT	T	1.965e^-5	0.671	INTERGENIC
2L	7900200	2L_7900200_SNP [dm3] 2L_7900200_SNP [dm6]	T	C	1.998e^-5	0.671	INTRON Snoo
3R	13637933	3R_13637933_SNP [dm3] 3R_17812211_SNP [dm6]	A	T	2.002e^-5	0.671	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	18314716	3L_18314716_SNP [dm3] 3L_18321616_SNP [dm6]	A	T	2.008e^-5	0.671	INTERGENIC
2L	18820036	2L_18820036_SNP [dm3] 2L_18820036_SNP [dm6]	G	A	2.069e^-5	0.671	INTRON CG17324
3R	17735410	3R_17735410_SNP [dm3] 3R_21909688_SNP [dm6]	G	T	2.076e^-5	0.671	INTERGENIC
X	17663702	X_17663702_SNP [dm3] X_17769669_SNP [dm6]	A	G	2.092e^-5	0.671	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2L	5212005	2L_5212005_SNP [dm3] 2L_5212005_SNP [dm6]	G	C	2.135e^-5	0.671	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2L	7900233	2L_7900233_SNP [dm3] 2L_7900233_SNP [dm6]	C	T	2.149e^-5	0.671	INTRON Snoo
2L	1184527	2L_1184527_SNP [dm3] 2L_1184527_SNP [dm6]	A	T	2.159e^-5	0.671	SYNONYMOUS_CODING Tgt UPSTREAM CG5126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17663692	X_17663692_SNP [dm3] X_17769659_SNP [dm6]	A	T	2.195e^-5	0.671	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2L	7899252	2L_7899252_SNP [dm3] 2L_7899252_SNP [dm6]	T	A	2.231e^-5	0.671	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8872928	3L_8872928_SNP [dm3] 3L_8879828_SNP [dm6]	C	A	2.254e^-5	0.671	INTRON dally
3L	19326589	3L_19326589_SNP [dm3] 3L_19333489_SNP [dm6]	C	T	2.304e^-5	0.672	INTRON pip
2L	7898762	2L_7898762_SNP [dm3] 2L_7898762_SNP [dm6]	G	C	2.351e^-5	0.672	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	21906726	3L_21906726_SNP [dm3] 3L_21913626_SNP [dm6]	A	G	2.363e^-5	0.672	INTRON mub	TF binding site mE1_TFBS_inv
3L	11403049	3L_11403049_SNP [dm3] 3L_11409949_SNP [dm6]	A	T	2.434e^-5	0.674	INTERGENIC
3L	13468985	3L_13468985_SNP [dm3] 3L_13475885_SNP [dm6]	A	C	2.529e^-5	0.674	INTERGENIC
2R	11592583	2R_11592583_SNP [dm3] 2R_15705078_SNP [dm6]	C	T	2.551e^-5	0.674	INTERGENIC
2R	11592591	2R_11592591_SNP [dm3] 2R_15705086_SNP [dm6]	G	A	2.551e^-5	0.674	INTERGENIC
2L	15596922	2L_15596922_SNP [dm3] 2L_15596922_SNP [dm6]	C	A	2.553e^-5	0.674	INTERGENIC
2L	5118122	2L_5118122_SNP [dm3] 2L_5118122_SNP [dm6]	G	A	2.756e^-5	0.697	INTRON Msp300
X	8579641	X_8579641_DEL [dm3] X_8685608_DEL [dm6]	CGC	C	2.784e^-5	0.697	UPSTREAM CG11284 INTRON CG11284
3L	815385	3L_815385_SNP [dm3] 3L_815385_SNP [dm6]	G	C	2.866e^-5	0.697	DOWNSTREAM CR44537 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22918243	3R_22918243_SNP [dm3] 3R_27092521_SNP [dm6]	C	T	2.900e^-5	0.697	UPSTREAM CG14258 INTERGENIC
3L	21906766	3L_21906766_SNP [dm3] 3L_21913666_SNP [dm6]	A	T	2.911e^-5	0.697	INTRON mub	TF binding site mE1_TFBS_inv
2R	13766313	2R_13766313_SNP [dm3] 2R_17878808_SNP [dm6]	T	C	3.011e^-5	0.697	SYNONYMOUS_CODING CG30325 INTRON Elk
3L	19300290	3L_19300290_SNP [dm3] 3L_19307190_SNP [dm6]	T	C	3.026e^-5	0.697	DOWNSTREAM pip INTRON pip
2L	7899256	2L_7899256_SNP [dm3] 2L_7899256_SNP [dm6]	G	C	3.026e^-5	0.697	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20176569	2R_20176569_SNP [dm3] 2R_24289046_SNP [dm6]	C	A	3.047e^-5	0.697	SYNONYMOUS_CODING nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6651949	3R_6651949_SNP [dm3] 3R_10826227_SNP [dm6]	T	A	3.050e^-5	0.697	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19347926	3L_19347926_INS [dm3] 3L_19354826_INS [dm6]	C	TTCA	3.082e^-5	0.697	INTRON CG32206
2R	13653229	2R_13653229_SNP [dm3] 2R_17765724_SNP [dm6]	G	A	3.128e^-5	0.697	SYNONYMOUS_CODING OstDelta DOWNSTREAM mir-3643	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19397334	3L_19397334_SNP [dm3] 3L_19404234_SNP [dm6]	A	G	3.129e^-5	0.697	INTRON CG32206
3R	16545134	3R_16545134_SNP [dm3] 3R_20719412_SNP [dm6]	G	T	3.189e^-5	0.697	INTERGENIC
3R	13637910	3R_13637910_SNP [dm3] 3R_17812188_SNP [dm6]	T	C	3.324e^-5	0.697	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	16195788	3L_16195788_SNP [dm3] 3L_16202688_SNP [dm6]	T	G	3.438e^-5	0.697	DOWNSTREAM CG33690 INTERGENIC
3L	1278167	3L_1278167_SNP [dm3] 3L_1278167_SNP [dm6]	A	C	3.488e^-5	0.697	INTRON CG32333
3R	21299897	3R_21299897_SNP [dm3] 3R_25474175_SNP [dm6]	G	A	3.496e^-5	0.697	NON_SYNONYMOUS_CODING Vps33B
X	9665792	X_9665792_SNP [dm3] X_9771759_SNP [dm6]	T	C	3.504e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4119298	3L_4119298_SNP [dm3] 3L_4119298_SNP [dm6]	C	A	3.685e^-5	0.697	INTRON Chd64
3R	6286568	3R_6286568_SNP [dm3] 3R_10460846_SNP [dm6]	T	C	3.691e^-5	0.697	UPSTREAM CR44939 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20042308	3L_20042308_SNP [dm3] 3L_20049208_SNP [dm6]	G	T	3.732e^-5	0.697	INTERGENIC
X	8966396	X_8966396_SNP [dm3] X_9072363_SNP [dm6]	G	A	3.797e^-5	0.697	UTR_3_PRIME CG44325 UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
2L	7900636	2L_7900636_SNP [dm3] 2L_7900636_SNP [dm6]	G	T	3.921e^-5	0.697	INTRON Snoo
3R	24488401	3R_24488401_INS [dm3] 3R_28662679_INS [dm6]	T	TT	4.026e^-5	0.697	INTERGENIC
3L	19300024	3L_19300024_SNP [dm3] 3L_19306924_SNP [dm6]	C	T	4.047e^-5	0.697	INTRON pip	TF binding site mE1_TFBS_sens
2L	5111974	2L_5111974_SNP [dm3] 2L_5111974_SNP [dm6]	C	T	4.067e^-5	0.697	INTRON Msp300
3L	1255986	3L_1255986_SNP [dm3] 3L_1255986_SNP [dm6]	T	A	4.081e^-5	0.697	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
3L	19300291	3L_19300291_SNP [dm3] 3L_19307191_SNP [dm6]	A	T	4.171e^-5	0.697	DOWNSTREAM pip INTRON pip
3L	5092323	3L_5092323_SNP [dm3] 3L_5092323_SNP [dm6]	A	T	4.186e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5117995	2L_5117995_SNP [dm3] 2L_5117995_SNP [dm6]	C	T	4.226e^-5	0.697	INTRON Msp300
2R	19348980	2R_19348980_SNP [dm3] 2R_23461457_SNP [dm6]	T	G	4.246e^-5	0.697	INTRON CG43795
3L	16199172	3L_16199172_SNP [dm3] 3L_16206072_SNP [dm6]	C	T	4.253e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19238645	2R_19238645_SNP [dm3] 2R_23351122_SNP [dm6]	C	G	4.260e^-5	0.697	UPSTREAM CG34210 INTERGENIC
3L	21786928	3L_21786928_SNP [dm3] 3L_21793828_SNP [dm6]	G	A	4.266e^-5	0.697	INTERGENIC
3L	19299044	3L_19299044_SNP [dm3] 3L_19305944_SNP [dm6]	C	G	4.267e^-5	0.697	DOWNSTREAM pip INTRON pip
3L	19316259	3L_19316259_SNP [dm3] 3L_19323159_SNP [dm6]	G	A	4.267e^-5	0.697	INTRON pip
3L	12468057	3L_12468057_SNP [dm3] 3L_12474957_SNP [dm6]	A	T	4.306e^-5	0.697	UTR_3_PRIME CG10663 DOWNSTREAM CG10616	TF binding site mE1_TFBS_cad
3R	14899338	3R_14899338_SNP [dm3] 3R_19073616_SNP [dm6]	G	T	4.441e^-5	0.697	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	812192	3L_812192_SNP [dm3] 3L_812192_SNP [dm6]	A	G	4.455e^-5	0.697	INTERGENIC
2R	8625752	2R_8625752_SNP [dm3] 2R_12738247_SNP [dm6]	T	G	4.498e^-5	0.697	INTRON CG42663
X	17307368	X_17307368_SNP [dm3] X_17413335_SNP [dm6]	G	C	4.510e^-5	0.697	UTR_3_PRIME CG8611 DOWNSTREAM CG8611
3R	9190328	3R_9190328_SNP [dm3] 3R_13364606_SNP [dm6]	A	T	4.529e^-5	0.697	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	17841205	3R_17841205_SNP [dm3] 3R_22015483_SNP [dm6]	A	G	4.540e^-5	0.697	SPLICE_SITE_REGION CG6332 DOWNSTREAM Eip93F & 1 other INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	5211622	2L_5211622_SNP [dm3] 2L_5211622_SNP [dm6]	G	A	4.568e^-5	0.697	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
X	11310680	X_11310680_SNP [dm3] X_11416647_SNP [dm6]	G	A	4.570e^-5	0.697	SYNONYMOUS_CODING Or10a UPSTREAM Gr10a
3R	6341534	3R_6341534_SNP [dm3] 3R_10515812_SNP [dm6]	T	C	4.660e^-5	0.697	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13682319	2L_13682319_SNP [dm3] 2L_13682319_SNP [dm6]	C	A	4.676e^-5	0.697	INTRON CG31814
3L	19323490	3L_19323490_SNP [dm3] 3L_19330390_SNP [dm6]	A	T	4.682e^-5	0.697	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18193011	2R_18193011_SNP [dm3] 2R_22305506_SNP [dm6]	A	G	4.717e^-5	0.697	INTRON wdp
2R	15332285	2R_15332285_SNP [dm3] 2R_19444780_SNP [dm6]	C	A	4.749e^-5	0.697	DOWNSTREAM RpL11 & 1 other INTRON Arl6
2L	4938179	2L_4938179_SNP [dm3] 2L_4938179_SNP [dm6]	G	A	4.757e^-5	0.697	NON_SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9666149	X_9666149_SNP [dm3] X_9772116_SNP [dm6]	G	C	4.788e^-5	0.697	INTERGENIC
3L	1340574	3L_1340574_SNP [dm3] 3L_1340574_SNP [dm6]	G	A	4.824e^-5	0.697	SYNONYMOUS_CODING CG2199	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19895085	2R_19895085_SNP [dm3] 2R_24007562_SNP [dm6]	G	A	4.829e^-5	0.697	INTRON Unc-89	TF binding site mE1_TFBS_cad
3R	13637922	3R_13637922_SNP [dm3] 3R_17812200_SNP [dm6]	G	A	4.849e^-5	0.697	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	9310800	2R_9310800_SNP [dm3] 2R_13423295_SNP [dm6]	G	C	4.915e^-5	0.697	SYNONYMOUS_CODING CG30060 INTRON CG42321
3L	19315020	3L_19315020_SNP [dm3] 3L_19321920_SNP [dm6]	C	T	4.936e^-5	0.697	INTRON pip
2L	5212229	2L_5212229_SNP [dm3] 2L_5212229_SNP [dm6]	T	C	5.018e^-5	0.697	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
3R	4930292	3R_4930292_SNP [dm3] 3R_9104570_SNP [dm6]	C	T	5.061e^-5	0.697	INTRON pum
3R	10827543	3R_10827543_INS [dm3] 3R_15001821_INS [dm6]	T	TT	5.083e^-5	0.697	INTERGENIC
3L	4853978	3L_4853978_SNP [dm3] 3L_4853978_SNP [dm6]	T	A	5.086e^-5	0.697	INTERGENIC
2R	9135779	2R_9135779_SNP [dm3] 2R_13248274_SNP [dm6]	T	C	5.128e^-5	0.697	DOWNSTREAM Mp20 & 1 other INTRON Mp20
3L	814192	3L_814192_SNP [dm3] 3L_814192_SNP [dm6]	A	G	5.132e^-5	0.697	EXON CR44537	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10901161	3L_10901161_SNP [dm3] 3L_10908061_SNP [dm6]	G	T	5.143e^-5	0.697	INTERGENIC
2R	11592534	2R_11592534_SNP [dm3] 2R_15705029_SNP [dm6]	G	A	5.200e^-5	0.697	INTERGENIC
3L	22042498	3L_22042498_SNP [dm3] 3L_22049398_SNP [dm6]	A	G	5.239e^-5	0.697	INTRON Oct-TyrR
3L	5238322	3L_5238322_SNP [dm3] 3L_5245222_SNP [dm6]	A	G	5.274e^-5	0.697	INTRON shep
2R	13652737	2R_13652737_SNP [dm3] 2R_17765232_SNP [dm6]	T	G	5.290e^-5	0.697	SYNONYMOUS_CODING OstDelta DOWNSTREAM CG5009	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	22498602	3L_22498602_SNP [dm3] 3L_22505502_SNP [dm6]	C	A	5.339e^-5	0.697	UPSTREAM CG43329 INTERGENIC
2L	13682608	2L_13682608_SNP [dm3] 2L_13682608_SNP [dm6]	A	G	5.377e^-5	0.697	INTRON CG31814
3L	8913222	3L_8913222_SNP [dm3] 3L_8920122_SNP [dm6]	A	G	5.400e^-5	0.697	INTRON Tsp66E
2L	5112289	2L_5112289_SNP [dm3] 2L_5112289_SNP [dm6]	T	G	5.457e^-5	0.697	INTRON Msp300
3L	9283279	3L_9283279_SNP [dm3] 3L_9290179_SNP [dm6]	C	G	5.503e^-5	0.697	INTERGENIC
3L	5242288	3L_5242288_SNP [dm3] 3L_5249188_SNP [dm6]	G	A	5.520e^-5	0.697	UPSTREAM shep INTRON shep
3R	7420392	3R_7420392_SNP [dm3] 3R_11594670_SNP [dm6]	G	C	5.557e^-5	0.697	INTRON Jupiter
3R	14064686	3R_14064686_SNP [dm3] 3R_18238964_SNP [dm6]	A	T	5.603e^-5	0.697	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
3L	9283263	3L_9283263_SNP [dm3] 3L_9290163_SNP [dm6]	C	T	5.610e^-5	0.697	INTERGENIC
3R	6661243	3R_6661243_SNP [dm3] 3R_10835521_SNP [dm6]	C	T	5.618e^-5	0.697	INTRON Cad86C	TF binding site mE1_TFBS_chinmo
2L	10008429	2L_10008429_INS [dm3] 2L_10008429_INS [dm6]	T	AA	5.628e^-5	0.697	UTR_3_PRIME CG4747 UPSTREAM Trp1 DOWNSTREAM CG4747
2L	7898683	2L_7898683_SNP [dm3] 2L_7898683_SNP [dm6]	C	A	5.651e^-5	0.697	INTRON Snoo
3R	8179482	3R_8179482_DEL [dm3] 3R_12353760_DEL [dm6]	TGGCCGT	T	5.732e^-5	0.699	CODON_DELETION MBD-R2
3L	19304545	3L_19304545_SNP [dm3] 3L_19311445_SNP [dm6]	A	G	5.759e^-5	0.699	INTRON pip
X	9999311	X_9999311_SNP [dm3] X_10105278_SNP [dm6]	T	G	5.783e^-5	0.699	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6666671	3R_6666671_SNP [dm3] 3R_10840949_SNP [dm6]	T	C	5.812e^-5	0.699	INTRON Cad86C	TF binding site mE1_TFBS_chinmo
X	9666531	X_9666531_SNP [dm3] X_9772498_SNP [dm6]	G	A	5.903e^-5	0.705	INTERGENIC
3R	13681560	3R_13681560_SNP [dm3] 3R_17855838_SNP [dm6]	C	G	5.987e^-5	0.707	INTRON tinc
3L	1276478	3L_1276478_SNP [dm3] 3L_1276478_SNP [dm6]	C	A	5.990e^-5	0.707	INTRON CG32333
3L	8872937	3L_8872937_SNP [dm3] 3L_8879837_SNP [dm6]	A	T	6.174e^-5	0.707	INTRON dally
3L	22042477	3L_22042477_SNP [dm3] 3L_22049377_SNP [dm6]	C	G	6.189e^-5	0.707	INTRON Oct-TyrR
3L	6900383	3L_6900383_SNP [dm3] 3L_6907283_SNP [dm6]	G	T	6.240e^-5	0.707	INTERGENIC
X	10426280	X_10426280_SNP [dm3] X_10532247_SNP [dm6]	A	T	6.245e^-5	0.707	INTRON spri
3L	16121131	3L_16121131_SNP [dm3] 3L_16128031_SNP [dm6]	A	G	6.274e^-5	0.707	INTRON Pgm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	8619513	2L_8619513_SNP [dm3] 2L_8619513_SNP [dm6]	G	C	6.323e^-5	0.707	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	7901123	2L_7901123_SNP [dm3] 2L_7901123_SNP [dm6]	C	G	6.352e^-5	0.707	INTRON Snoo
2L	4594900	2L_4594900_SNP [dm3] 2L_4594900_SNP [dm6]	G	T	6.461e^-5	0.707	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9084839	2R_9084839_SNP [dm3] 2R_13197334_SNP [dm6]	C	A	6.571e^-5	0.707	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6962550	X_6962550_SNP [dm3] X_7068517_SNP [dm6]	T	A	6.574e^-5	0.707	UPSTREAM CG4607 INTERGENIC
X	13066134	X_13066134_SNP [dm3] X_13172101_SNP [dm6]	G	A	6.722e^-5	0.707	INTRON CG34411	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17663704	X_17663704_SNP [dm3] X_17769671_SNP [dm6]	T	A	6.730e^-5	0.707	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2L	7900801	2L_7900801_SNP [dm3] 2L_7900801_SNP [dm6]	G	C	6.757e^-5	0.707	INTRON Snoo
2L	8695914	2L_8695914_SNP [dm3] 2L_8695914_SNP [dm6]	A	G	6.808e^-5	0.707	INTRON Hnf4
2L	5287658	2L_5287658_SNP [dm3] 2L_5287658_SNP [dm6]	C	T	6.821e^-5	0.707	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
X	12133750	X_12133750_SNP [dm3] X_12239717_SNP [dm6]	A	C	6.877e^-5	0.707	INTRON Ten-a
2R	16193265	2R_16193265_SNP [dm3] 2R_20305760_SNP [dm6]	T	A	6.890e^-5	0.707	INTRON CG11200
3R	25416399	3R_25416399_DEL [dm3] 3R_29590677_DEL [dm6]	TCCTC	T	6.894e^-5	0.707	FRAME_SHIFT CG31041 UPSTREAM CG11470	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13766261	2R_13766261_SNP [dm3] 2R_17878756_SNP [dm6]	G	C	6.905e^-5	0.707	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
3L	22514092	3L_22514092_SNP [dm3] 3L_22520992_SNP [dm6]	G	T	7.009e^-5	0.707	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7901831	2L_7901831_INS [dm3] 2L_7901831_INS [dm6]	T	TT	7.062e^-5	0.707	INTRON Snoo
2R	18193030	2R_18193030_SNP [dm3] 2R_22305525_SNP [dm6]	C	T	7.066e^-5	0.707	INTRON wdp
3R	26887998	3R_26887998_SNP [dm3] 3R_31062276_SNP [dm6]	C	A	7.068e^-5	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16622865	2L_16622865_DEL [dm3] 2L_16622865_DEL [dm6]	AAA	A	7.156e^-5	0.707	INTRON CG42389	TF binding site mE1_TFBS_chinmo
3R	13784264	3R_13784264_SNP [dm3] 3R_17958542_SNP [dm6]	C	G	7.160e^-5	0.707	INTRON cpo
2R	13651885	2R_13651885_SNP [dm3] 2R_17764380_SNP [dm6]	C	T	7.160e^-5	0.707	UTR_3_PRIME CG5009 DOWNSTREAM OstDelta
3L	12024279	3L_12024279_SNP [dm3] 3L_12031179_SNP [dm6]	A	G	7.166e^-5	0.707	INTRON rols	TF binding site mE1_TFBS_cad
3R	20706594	3R_20706594_SNP [dm3] 3R_24880872_SNP [dm6]	C	T	7.254e^-5	0.707	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
2L	5212035	2L_5212035_SNP [dm3] 2L_5212035_SNP [dm6]	T	C	7.260e^-5	0.707	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2L	7900697	2L_7900697_SNP [dm3] 2L_7900697_SNP [dm6]	T	A	7.291e^-5	0.707	INTRON Snoo
3R	17841204	3R_17841204_SNP [dm3] 3R_22015482_SNP [dm6]	A	G	7.337e^-5	0.707	SPLICE_SITE_REGION CG6332 DOWNSTREAM Eip93F & 1 other INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1275504	3L_1275504_SNP [dm3] 3L_1275504_SNP [dm6]	A	T	7.358e^-5	0.707	UPSTREAM CG32333 INTERGENIC
2R	20148580	2R_20148580_SNP [dm3] 2R_24261057_SNP [dm6]	G	A	7.361e^-5	0.707	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16471465	3L_16471465_SNP [dm3] 3L_16478365_SNP [dm6]	G	C	7.388e^-5	0.707	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
2R	19901543	2R_19901543_DEL [dm3] 2R_24014020_DEL [dm6]	GATTTAAGG	G	7.421e^-5	0.707	UTR_5_PRIME Unc-89 DOWNSTREAM CG4324
2R	8887204	2R_8887204_SNP [dm3] 2R_12999699_SNP [dm6]	C	G	7.566e^-5	0.707	INTRON Su_z_2	TF binding site mE1_TFBS_HSA
2L	5118071	2L_5118071_SNP [dm3] 2L_5118071_SNP [dm6]	T	C	7.599e^-5	0.707	INTRON Msp300
3R	25415724	3R_25415724_SNP [dm3] 3R_29590002_SNP [dm6]	A	G	7.625e^-5	0.707	UPSTREAM CG11470 DOWNSTREAM CG31041 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3325187	X_3325187_SNP [dm3] X_3431154_SNP [dm6]	G	C	7.642e^-5	0.707	INTRON CR44999 & 1 other
3L	887665	3L_887665_SNP [dm3] 3L_887665_SNP [dm6]	C	T	7.649e^-5	0.707	UPSTREAM CG32479 INTRON CG32479
2R	19471422	2R_19471422_SNP [dm3] 2R_23583899_SNP [dm6]	A	G	7.665e^-5	0.707	START_GAINED apt UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19471560	2R_19471560_SNP [dm3] 2R_23584037_SNP [dm6]	C	T	7.665e^-5	0.707	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19472010	2R_19472010_SNP [dm3] 2R_23584487_SNP [dm6]	C	T	7.665e^-5	0.707	INTRON apt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14060256	2R_14060256_SNP [dm3] 2R_18172751_SNP [dm6]	T	C	7.670e^-5	0.707	UPSTREAM CR45315 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16141812	3L_16141812_SNP [dm3] 3L_16148712_SNP [dm6]	C	G	7.687e^-5	0.707	UTR_5_PRIME CG5151
3R	13681662	3R_13681662_SNP [dm3] 3R_17855940_SNP [dm6]	T	A	7.778e^-5	0.709	INTRON tinc
3R	8092016	3R_8092016_SNP [dm3] 3R_12266294_SNP [dm6]	T	A	7.799e^-5	0.709	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6753796	3R_6753796_SNP [dm3] 3R_10928074_SNP [dm6]	A	C	7.833e^-5	0.709	INTERGENIC
3R	16628701	3R_16628701_SNP [dm3] 3R_20802979_SNP [dm6]	C	A	7.859e^-5	0.709	INTRON Syp
3L	13211601	3L_13211601_SNP [dm3] 3L_13218501_SNP [dm6]	C	T	8.120e^-5	0.716	DOWNSTREAM CR43914 EXON CR45098
2R	11981254	2R_11981254_SNP [dm3] 2R_16093749_SNP [dm6]	C	A	8.172e^-5	0.716	INTRON Dg	TF binding site BDTNP1_TFBS_twi
3L	19298773	3L_19298773_SNP [dm3] 3L_19305673_SNP [dm6]	T	C	8.179e^-5	0.716	DOWNSTREAM pip INTRON pip
2R	8630382	2R_8630382_SNP [dm3] 2R_12742877_SNP [dm6]	G	A	8.205e^-5	0.716	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10921481	3R_10921481_SNP [dm3] 3R_15095759_SNP [dm6]	T	C	8.208e^-5	0.716	UPSTREAM CG6966 DOWNSTREAM CG42788 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	15850248	X_15850248_SNP [dm3] X_15956215_SNP [dm6]	T	C	8.222e^-5	0.716	INTRON mmd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7301584	3R_7301584_SNP [dm3] 3R_11475862_SNP [dm6]	C	T	8.245e^-5	0.716	INTERGENIC
2L	5117107	2L_5117107_SNP [dm3] 2L_5117107_SNP [dm6]	C	T	8.285e^-5	0.716	INTRON Msp300
2R	4556284	2R_4556284_SNP [dm3] 2R_8668779_SNP [dm6]	A	G	8.321e^-5	0.716	INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	8451921	2L_8451921_SNP [dm3] 2L_8451921_SNP [dm6]	G	A	8.374e^-5	0.716	UPSTREAM fu12 INTRON fu12
3L	22514203	3L_22514203_SNP [dm3] 3L_22521103_SNP [dm6]	T	A	8.453e^-5	0.716	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12030399	2R_12030399_SNP [dm3] 2R_16142894_SNP [dm6]	T	A	8.457e^-5	0.716	UTR_3_PRIME CG30094 UPSTREAM Aats-cys DOWNSTREAM Got1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11367881	3L_11367881_SNP [dm3] 3L_11374781_SNP [dm6]	A	G	8.464e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	811918	3L_811918_SNP [dm3] 3L_811918_SNP [dm6]	G	T	8.537e^-5	0.716	INTERGENIC
2L	7900509	2L_7900509_SNP [dm3] 2L_7900509_SNP [dm6]	A	C	8.596e^-5	0.716	INTRON Snoo
2R	17577764	2R_17577764_SNP [dm3] 2R_21690259_SNP [dm6]	G	T	8.629e^-5	0.716	UTR_3_PRIME Tim10 & 1 other DOWNSTREAM CG10307	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12228469	3L_12228469_SNP [dm3] 3L_12235369_SNP [dm6]	G	C	8.758e^-5	0.716	INTRON app
2L	5113996	2L_5113996_SNP [dm3] 2L_5113996_SNP [dm6]	G	T	8.804e^-5	0.716	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12123317	3R_12123317_SNP [dm3] 3R_16297595_SNP [dm6]	A	G	8.808e^-5	0.716	UTR_3_PRIME gish INTRON gish
2R	19894767	2R_19894767_SNP [dm3] 2R_24007244_SNP [dm6]	T	A	8.815e^-5	0.716	INTRON Unc-89
3R	18399918	3R_18399918_SNP [dm3] 3R_22574196_SNP [dm6]	A	G	8.818e^-5	0.716	INTRON CG33110
2R	11839395	2R_11839395_DEL [dm3] 2R_15951890_DEL [dm6]	CACAAACTACTGGTTACTTT...	C	8.837e^-5	0.716	SPLICE_SITE_DONOR Strn-Mlck SPLICE_SITE_REGION Strn-Mlck UTR_5_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
3L	22020682	3L_22020682_SNP [dm3] 3L_22027582_SNP [dm6]	G	A	8.919e^-5	0.716	SYNONYMOUS_CODING CG7140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	9135643	2R_9135643_SNP [dm3] 2R_13248138_SNP [dm6]	C	A	8.969e^-5	0.716	DOWNSTREAM Mp20 & 1 other INTRON Mp20
2R	16870628	2R_16870628_SNP [dm3] 2R_20983123_SNP [dm6]	A	T	8.998e^-5	0.716	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651	TF binding site mE1_TFBS_cad
3R	8375615	3R_8375615_SNP [dm3] 3R_12549893_SNP [dm6]	C	A	9.036e^-5	0.716	DOWNSTREAM Octbeta2R INTERGENIC
2L	13682405	2L_13682405_DEL [dm3] 2L_13682405_DEL [dm6]	GGTTAT	G	9.065e^-5	0.716	INTRON CG31814
3R	18438759	3R_18438759_SNP [dm3] 3R_22613037_SNP [dm6]	T	C	9.102e^-5	0.716	NON_SYNONYMOUS_CODING CG31156 UPSTREAM EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8023946	2L_8023946_SNP [dm3] 2L_8023946_SNP [dm6]	A	G	9.142e^-5	0.716	INTRON Tg	regulatory region REDfly_CRMs
3L	1275437	3L_1275437_SNP [dm3] 3L_1275437_SNP [dm6]	A	T	9.188e^-5	0.716	UPSTREAM CG32333 DOWNSTREAM CG9134 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1276613	3L_1276613_SNP [dm3] 3L_1276613_SNP [dm6]	T	A	9.188e^-5	0.716	INTRON CG32333
3R	9407392	3R_9407392_SNP [dm3] 3R_13581670_SNP [dm6]	G	C	9.252e^-5	0.716	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13682414	2L_13682414_SNP [dm3] 2L_13682414_SNP [dm6]	C	G	9.291e^-5	0.716	INTRON CG31814
3R	21299916	3R_21299916_SNP [dm3] 3R_25474194_SNP [dm6]	A	G	9.361e^-5	0.716	NON_SYNONYMOUS_CODING Vps33B
2L	5287697	2L_5287697_SNP [dm3] 2L_5287697_SNP [dm6]	T	A	9.500e^-5	0.716	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
3L	9557225	3L_9557225_SNP [dm3] 3L_9564125_SNP [dm6]	T	G	9.518e^-5	0.716	INTRON CG42673
3R	13681672	3R_13681672_SNP [dm3] 3R_17855950_SNP [dm6]	A	G	9.553e^-5	0.716	INTRON tinc
3R	7294084	3R_7294084_SNP [dm3] 3R_11468362_SNP [dm6]	C	T	9.575e^-5	0.716	DOWNSTREAM CG17230 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13385954	3R_13385954_SNP [dm3] 3R_17560232_SNP [dm6]	T	C	9.588e^-5	0.716	INTRON Hmx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20706601	3R_20706601_SNP [dm3] 3R_24880879_SNP [dm6]	T	C	9.647e^-5	0.716	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
3R	18836998	3R_18836998_SNP [dm3] 3R_23011276_SNP [dm6]	A	G	9.684e^-5	0.716	UPSTREAM CG34375 DOWNSTREAM CR44225 INTERGENIC
2R	18193010	2R_18193010_SNP [dm3] 2R_22305505_SNP [dm6]	G	A	9.728e^-5	0.716	INTRON wdp
3L	6372979	3L_6372979_SNP [dm3] 3L_6379879_SNP [dm6]	G	A	9.740e^-5	0.716	INTERGENIC
3R	20706588	3R_20706588_SNP [dm3] 3R_24880866_SNP [dm6]	G	A	9.746e^-5	0.716	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
3R	27172294	3R_27172294_SNP [dm3] 3R_31346572_SNP [dm6]	G	C	9.896e^-5	0.716	INTRON CG34347
3R	6651940	3R_6651940_SNP [dm3] 3R_10826218_SNP [dm6]	A	G	9.913e^-5	0.716	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13681554	3R_13681554_SNP [dm3] 3R_17855832_SNP [dm6]	C	A	9.918e^-5	0.716	INTRON tinc
3L	12071272	3L_12071272_SNP [dm3] 3L_12078172_SNP [dm6]	A	C	9.942e^-5	0.716	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5287698	2L_5287698_SNP [dm3] 2L_5287698_SNP [dm6]	C	T	9.952e^-5	0.716	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
2L	6810355	2L_6810355_SNP [dm3] 2L_6810355_SNP [dm6]	C	T	9.961e^-5	0.716	INTERGENIC
3L	12921304	3L_12921304_SNP [dm3] 3L_12928204_SNP [dm6]	G	A	9.997e^-5	0.716	INTERGENIC
3R	7221740	3R_7221740_SNP [dm3] 3R_11396018_SNP [dm6]	G	T	1.006e^-4	0.716	UTR_3_PRIME pros DOWNSTREAM pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19612252	3R_19612252_SNP [dm3] 3R_23786530_SNP [dm6]	G	A	1.009e^-4	0.716	INTRON mbc
3R	2352742	3R_2352742_SNP [dm3] 3R_6527020_SNP [dm6]	G	A	1.011e^-4	0.716	UPSTREAM CG15185 INTERGENIC
3R	13681664	3R_13681664_SNP [dm3] 3R_17855942_SNP [dm6]	G	A	1.014e^-4	0.716	INTRON tinc
3R	13681553	3R_13681553_SNP [dm3] 3R_17855831_SNP [dm6]	C	T	1.014e^-4	0.716	INTRON tinc
X	1002083	X_1002083_INS [dm3] X_1108050_INS [dm6]	T	TT	1.025e^-4	0.716	INTRON CG3655
3L	16017367	3L_16017367_SNP [dm3] 3L_16024267_SNP [dm6]	G	T	1.039e^-4	0.716	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5241215	3L_5241215_SNP [dm3] 3L_5248115_SNP [dm6]	G	T	1.039e^-4	0.716	INTRON shep	TF binding site mE1_TFBS_eve
2R	5012297	2R_5012297_SNP [dm3] 2R_9124792_SNP [dm6]	A	G	1.039e^-4	0.716	SYNONYMOUS_CODING CG18659 UTR_3_PRIME CG18659 INTRON CG18659	TF binding site mE1_TFBS_chinmo
3L	22971905	3L_22971905_SNP [dm3] 3L_22978805_SNP [dm6]	T	G	1.040e^-4	0.716	INTERGENIC
2R	6237679	2R_6237679_SNP [dm3] 2R_10350174_SNP [dm6]	G	C	1.041e^-4	0.716	INTRON CG42732
3L	18643437	3L_18643437_SNP [dm3] 3L_18650337_SNP [dm6]	T	C	1.042e^-4	0.716	INTRON MYPT-75D
2L	5118235	2L_5118235_SNP [dm3] 2L_5118235_SNP [dm6]	G	A	1.060e^-4	0.716	INTRON Msp300
3L	21283747	3L_21283747_SNP [dm3] 3L_21290647_SNP [dm6]	G	A	1.063e^-4	0.716	DOWNSTREAM pzg INTERGENIC
2L	6978759	2L_6978759_SNP [dm3] 2L_6978759_SNP [dm6]	G	A	1.063e^-4	0.716	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20112006	3R_20112006_SNP [dm3] 3R_24286284_SNP [dm6]	G	A	1.065e^-4	0.716	SYNONYMOUS_CODING CG6356	TF binding site mE1_TFBS_HSA
3L	7023068	3L_7023068_SNP [dm3] 3L_7029968_SNP [dm6]	G	A	1.071e^-4	0.716	INTRON Mp
2R	4368756	2R_4368756_SNP [dm3] 2R_8481251_SNP [dm6]	A	G	1.080e^-4	0.716	SYNONYMOUS_CODING mtt
3R	6662564	3R_6662564_SNP [dm3] 3R_10836842_SNP [dm6]	A	G	1.088e^-4	0.716	INTRON Cad86C
3L	2263489	3L_2263489_SNP [dm3] 3L_2263489_SNP [dm6]	A	C	1.088e^-4	0.716	NON_SYNONYMOUS_CODING CG13807 UPSTREAM oxt DOWNSTREAM ecd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	21228442	3R_21228442_SNP [dm3] 3R_25402720_SNP [dm6]	C	T	1.100e^-4	0.716	INTRON Fur1
2R	14060161	2R_14060161_SNP [dm3] 2R_18172656_SNP [dm6]	G	A	1.101e^-4	0.716	UPSTREAM CR45315 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl
3L	16739371	3L_16739371_INS [dm3] 3L_16746271_INS [dm6]	T	TATACCA	1.102e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5117382	2L_5117382_SNP [dm3] 2L_5117382_SNP [dm6]	T	C	1.105e^-4	0.716	INTRON Msp300
3R	25416492	3R_25416492_SNP [dm3] 3R_29590770_SNP [dm6]	C	T	1.105e^-4	0.716	NON_SYNONYMOUS_CODING CG31041	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19235371	2R_19235371_INS [dm3] 2R_23347848_INS [dm6]	A	AAGAAAACAAC...	1.106e^-4	0.716	UPSTREAM CG3502 DOWNSTREAM CG9863 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	7901431	2L_7901431_SNP [dm3] 2L_7901431_SNP [dm6]	T	A	1.109e^-4	0.716	INTRON Snoo
3R	25415599	3R_25415599_SNP [dm3] 3R_29589877_SNP [dm6]	G	A	1.117e^-4	0.716	UPSTREAM CG11470 DOWNSTREAM CG31041 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13707784	3R_13707784_SNP [dm3] 3R_17882062_SNP [dm6]	A	G	1.119e^-4	0.716	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22021454	3L_22021454_SNP [dm3] 3L_22028354_SNP [dm6]	T	C	1.120e^-4	0.716	UPSTREAM CG7140 INTERGENIC
2R	19546065	2R_19546065_SNP [dm3] 2R_23658542_SNP [dm6]	A	C	1.120e^-4	0.716	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18219144	2R_18219144_SNP [dm3] 2R_22331639_SNP [dm6]	A	T	1.123e^-4	0.716	SPLICE_SITE_REGION T3dh UPSTREAM pgc INTRON pgc & 1 other
2L	5117123	2L_5117123_INS [dm3] 2L_5117123_INS [dm6]	A	CG	1.126e^-4	0.716	INTRON Msp300
3R	4144730	3R_4144730_SNP [dm3] 3R_8319008_SNP [dm6]	A	T	1.139e^-4	0.716	UTR_3_PRIME Ctr1B DOWNSTREAM Poxm
3L	10901169	3L_10901169_SNP [dm3] 3L_10908069_SNP [dm6]	A	T	1.140e^-4	0.716	INTERGENIC
2R	19248718	2R_19248718_SNP [dm3] 2R_23361195_SNP [dm6]	G	A	1.142e^-4	0.716	SYNONYMOUS_CODING vir DOWNSTREAM CG34424	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	3555379	2L_3555379_SNP [dm3] 2L_3555379_SNP [dm6]	G	A	1.147e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	17663684	X_17663684_SNP [dm3] X_17769651_SNP [dm6]	T	A	1.148e^-4	0.716	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
3R	22641995	3R_22641995_DEL [dm3] 3R_26816273_DEL [dm6]	CT	A	1.149e^-4	0.716	INTRON Tl
3R	16545160	3R_16545160_SNP [dm3] 3R_20719438_SNP [dm6]	C	A	1.166e^-4	0.716	INTERGENIC
3R	6651983	3R_6651983_SNP [dm3] 3R_10826261_SNP [dm6]	T	C	1.166e^-4	0.716	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20112027	3R_20112027_SNP [dm3] 3R_24286305_SNP [dm6]	T	C	1.167e^-4	0.716	SYNONYMOUS_CODING CG6356	TF binding site mE1_TFBS_HSA
X	10426286	X_10426286_SNP [dm3] X_10532253_SNP [dm6]	G	A	1.169e^-4	0.716	INTRON spri
3R	5801952	3R_5801952_SNP [dm3] 3R_9976230_SNP [dm6]	G	A	1.170e^-4	0.716	INTRON Glut4EF
3R	25271778	3R_25271778_SNP [dm3] 3R_29446056_SNP [dm6]	G	A	1.172e^-4	0.716	INTRON Ptp99A
2L	5117509	2L_5117509_SNP [dm3] 2L_5117509_SNP [dm6]	C	A	1.173e^-4	0.716	INTRON Msp300
3R	25416396	3R_25416396_SNP [dm3] 3R_29590674_SNP [dm6]	A	T	1.179e^-4	0.716	NON_SYNONYMOUS_CODING CG31041 UPSTREAM CG11470	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16157477	3L_16157477_DEL [dm3] 3L_16164377_DEL [dm6]	GCT	G	1.180e^-4	0.716	UTR_5_PRIME CG5151	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12751850	2R_12751850_SNP [dm3] 2R_16864345_SNP [dm6]	G	C	1.184e^-4	0.716	INTRON Psi
2R	19236931	2R_19236931_SNP [dm3] 2R_23349408_SNP [dm6]	A	T	1.196e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10265963	3L_10265963_SNP [dm3] 3L_10272863_SNP [dm6]	G	A	1.200e^-4	0.716	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	8619515	2L_8619515_SNP [dm3] 2L_8619515_SNP [dm6]	A	G	1.211e^-4	0.716	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	8451924	2L_8451924_SNP [dm3] 2L_8451924_SNP [dm6]	A	G	1.219e^-4	0.716	UPSTREAM fu12 INTRON fu12
2L	19425909	2L_19425909_SNP [dm3] 2L_19425909_SNP [dm6]	A	G	1.219e^-4	0.716	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18728112	X_18728112_SNP [dm3] X_18834079_SNP [dm6]	G	A	1.221e^-4	0.716	INTRON Pvf1
X	13356499	X_13356499_SNP [dm3] X_13462466_SNP [dm6]	A	T	1.221e^-4	0.716	INTRON Neto
2L	12917285	2L_12917285_SNP [dm3] 2L_12917285_SNP [dm6]	G	A	1.223e^-4	0.716	NON_SYNONYMOUS_CODING ACXB DOWNSTREAM ACXC
3L	20644309	3L_20644309_SNP [dm3] 3L_20651209_SNP [dm6]	A	G	1.229e^-4	0.716	INTERGENIC
2R	17234165	2R_17234165_SNP [dm3] 2R_21346660_SNP [dm6]	A	G	1.229e^-4	0.716	DOWNSTREAM CG9822 INTERGENIC
3L	19308687	3L_19308687_SNP [dm3] 3L_19315587_SNP [dm6]	A	C	1.230e^-4	0.716	INTRON pip	TF binding site BDTNP1_TFBS_da
2R	18630108	2R_18630108_SNP [dm3] 2R_22742603_SNP [dm6]	A	T	1.243e^-4	0.716	UTR_3_PRIME CG42260 DOWNSTREAM CG42260
3L	11367891	3L_11367891_SNP [dm3] 3L_11374791_SNP [dm6]	T	A	1.247e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	4502995	2R_4502995_SNP [dm3] 2R_8615490_SNP [dm6]	T	C	1.253e^-4	0.716	UPSTREAM Cirl INTRON Cirl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13652585	2R_13652585_SNP [dm3] 2R_17765080_SNP [dm6]	A	G	1.258e^-4	0.716	DOWNSTREAM CG5009 INTRON OstDelta	TF binding site mE1_TFBS_sens
2L	15354825	2L_15354825_SNP [dm3] 2L_15354825_SNP [dm6]	C	T	1.260e^-4	0.716	INTERGENIC
3R	22227115	3R_22227115_SNP [dm3] 3R_26401393_SNP [dm6]	T	G	1.264e^-4	0.716	DOWNSTREAM ppk15 INTERGENIC
3R	10921118	3R_10921118_SNP [dm3] 3R_15095396_SNP [dm6]	C	T	1.265e^-4	0.716	UTR_5_PRIME CG6966 DOWNSTREAM CG42788	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9585619	3R_9585619_SNP [dm3] 3R_13759897_SNP [dm6]	G	A	1.265e^-4	0.716	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383	TF binding site mE1_TFBS_cad
3L	21788091	3L_21788091_SNP [dm3] 3L_21794991_SNP [dm6]	T	C	1.265e^-4	0.716	INTERGENIC
2L	7900734	2L_7900734_SNP [dm3] 2L_7900734_SNP [dm6]	T	C	1.267e^-4	0.716	INTRON Snoo
2R	6088606	2R_6088606_SNP [dm3] 2R_10201101_SNP [dm6]	G	T	1.275e^-4	0.716	INTERGENIC
2L	7900646	2L_7900646_SNP [dm3] 2L_7900646_SNP [dm6]	G	C	1.279e^-4	0.716	INTRON Snoo
3L	22026644	3L_22026644_DEL [dm3] 3L_22033544_DEL [dm6]	ATGTGTTGGA	A	1.280e^-4	0.716	INTERGENIC
2L	1545120	2L_1545120_SNP [dm3] 2L_1545120_SNP [dm6]	T	C	1.284e^-4	0.716	INTERGENIC
3R	16796900	3R_16796900_SNP [dm3] 3R_20971178_SNP [dm6]	G	A	1.287e^-4	0.716	INTRON Atpalpha
3L	16121274	3L_16121274_SNP [dm3] 3L_16128174_SNP [dm6]	G	A	1.304e^-4	0.716	SYNONYMOUS_CODING Pgm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	18093471	3L_18093471_SNP [dm3] 3L_18100371_SNP [dm6]	T	A	1.307e^-4	0.716	INTRON CG13698
3R	10949506	3R_10949506_SNP [dm3] 3R_15123784_SNP [dm6]	G	C	1.308e^-4	0.716	INTRON CG42788
3R	12146124	3R_12146124_INS [dm3] 3R_16320402_INS [dm6]	G	GCTCTG	1.311e^-4	0.716	UPSTREAM tRNA:F2:89BC INTRON Sulf1
2L	1184524	2L_1184524_SNP [dm3] 2L_1184524_SNP [dm6]	A	G	1.313e^-4	0.716	SYNONYMOUS_CODING Tgt UPSTREAM CG5126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3508025	2L_3508025_SNP [dm3] 2L_3508025_SNP [dm6]	C	T	1.329e^-4	0.716	UTR_5_PRIME tim UPSTREAM tim & 1 other INTRON tim
3R	6663278	3R_6663278_SNP [dm3] 3R_10837556_SNP [dm6]	T	G	1.332e^-4	0.716	INTRON Cad86C
3L	22786658	3L_22786658_INS [dm3] 3L_22793558_INS [dm6]	A	ACATCTTTACA...	1.340e^-4	0.716	UTR_3_PRIME jim
3R	25416398	3R_25416398_SNP [dm3] 3R_29590676_SNP [dm6]	G	C	1.342e^-4	0.716	NON_SYNONYMOUS_CODING CG31041 UPSTREAM CG11470	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7293460	3L_7293460_SNP [dm3] 3L_7300360_SNP [dm6]	C	T	1.349e^-4	0.716	INTRON unc-13-4A
3R	4436840	3R_4436840_SNP [dm3] 3R_8611118_SNP [dm6]	C	T	1.351e^-4	0.716	INTRON 5-HT2B
3R	9875627	3R_9875627_SNP [dm3] 3R_14049905_SNP [dm6]	G	C	1.353e^-4	0.716	INTERGENIC
2R	15332280	2R_15332280_SNP [dm3] 2R_19444775_SNP [dm6]	G	A	1.357e^-4	0.716	DOWNSTREAM RpL11 & 1 other INTRON Arl6
3R	13637929	3R_13637929_SNP [dm3] 3R_17812207_SNP [dm6]	C	T	1.359e^-4	0.716	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	11007022	2L_11007022_SNP [dm3] 2L_11007022_SNP [dm6]	C	T	1.360e^-4	0.716	NON_SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1185547	2L_1185547_SNP [dm3] 2L_1185547_SNP [dm6]	A	T	1.375e^-4	0.716	UTR_3_PRIME Tgt UPSTREAM CG5001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	13424674	2L_13424674_SNP [dm3] 2L_13424674_SNP [dm6]	A	T	1.381e^-4	0.716	INTRON CG42784
2L	5116436	2L_5116436_SNP [dm3] 2L_5116436_SNP [dm6]	C	T	1.383e^-4	0.716	INTRON Msp300
3L	2263487	3L_2263487_SNP [dm3] 3L_2263487_SNP [dm6]	G	A	1.397e^-4	0.716	NON_SYNONYMOUS_CODING CG13807 UPSTREAM oxt DOWNSTREAM ecd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	12445124	3L_12445124_SNP [dm3] 3L_12452024_SNP [dm6]	T	C	1.399e^-4	0.716	INTERGENIC
3R	14064737	3R_14064737_SNP [dm3] 3R_18239015_SNP [dm6]	T	G	1.399e^-4	0.716	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
3L	1340983	3L_1340983_SNP [dm3] 3L_1340983_SNP [dm6]	A	C	1.402e^-4	0.716	SYNONYMOUS_CODING CG2199	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1126401	2L_1126401_SNP [dm3] 2L_1126401_SNP [dm6]	G	T	1.402e^-4	0.716	INTRON Pino
2L	4938165	2L_4938165_SNP [dm3] 2L_4938165_SNP [dm6]	G	C	1.421e^-4	0.716	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17637693	3L_17637693_SNP [dm3] 3L_17644593_SNP [dm6]	G	A	1.422e^-4	0.716	DOWNSTREAM CG43085 INTRON Pep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	7901429	2L_7901429_SNP [dm3] 2L_7901429_SNP [dm6]	A	G	1.423e^-4	0.716	INTRON Snoo
2L	8619519	2L_8619519_SNP [dm3] 2L_8619519_SNP [dm6]	T	G	1.426e^-4	0.716	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	12972871	2L_12972871_SNP [dm3] 2L_12972871_SNP [dm6]	C	T	1.427e^-4	0.716	INTERGENIC
2L	15595945	2L_15595945_SNP [dm3] 2L_15595945_SNP [dm6]	A	G	1.432e^-4	0.716	INTERGENIC
3L	11403083	3L_11403083_SNP [dm3] 3L_11409983_SNP [dm6]	A	C	1.434e^-4	0.716	INTERGENIC
2L	18430301	2L_18430301_SNP [dm3] 2L_18430301_SNP [dm6]	C	T	1.435e^-4	0.716	INTERGENIC
2R	19894781	2R_19894781_SNP [dm3] 2R_24007258_SNP [dm6]	C	A	1.435e^-4	0.716	SPLICE_SITE_REGION Unc-89 INTRON Unc-89
3R	6044509	3R_6044509_DEL [dm3] 3R_10218787_DEL [dm6]	ATATATA	A	1.440e^-4	0.716	INTRON Syn
2L	665745	2L_665745_SNP [dm3] 2L_665745_SNP [dm6]	G	T	1.444e^-4	0.716	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19350505	2R_19350505_SNP [dm3] 2R_23462982_SNP [dm6]	A	C	1.452e^-4	0.716	INTRON CG43795
3R	6646360	3R_6646360_INS [dm3] 3R_10820638_INS [dm6]	A	ATGCAGAT	1.453e^-4	0.716	INTERGENIC
X	11069462	X_11069462_SNP [dm3] X_11175429_SNP [dm6]	T	G	1.453e^-4	0.716	INTERGENIC
2L	13682311	2L_13682311_SNP [dm3] 2L_13682311_SNP [dm6]	T	C	1.459e^-4	0.716	INTRON CG31814
2L	1192187	2L_1192187_SNP [dm3] 2L_1192187_SNP [dm6]	A	C	1.462e^-4	0.716	SYNONYMOUS_CODING CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7900689	2L_7900689_SNP [dm3] 2L_7900689_SNP [dm6]	A	G	1.464e^-4	0.716	INTRON Snoo
2R	19606345	2R_19606345_SNP [dm3] 2R_23718822_SNP [dm6]	A	T	1.468e^-4	0.716	UTR_3_PRIME CG18128 INTRON Sesn	TF binding site mE1_TFBS_chinmo
3L	11403095	3L_11403095_SNP [dm3] 3L_11409995_SNP [dm6]	T	C	1.468e^-4	0.716	INTERGENIC
3L	2275455	3L_2275455_SNP [dm3] 3L_2275455_SNP [dm6]	T	G	1.470e^-4	0.716	INTERGENIC
3R	22642783	3R_22642783_SNP [dm3] 3R_26817061_SNP [dm6]	C	T	1.478e^-4	0.716	INTRON Tl
2L	5155868	2L_5155868_SNP [dm3] 2L_5155868_SNP [dm6]	T	G	1.479e^-4	0.716	INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15947331	3R_15947331_SNP [dm3] 3R_20121609_SNP [dm6]	A	G	1.485e^-4	0.716	NON_SYNONYMOUS_CODING Gr92a
X	8471468	X_8471468_SNP [dm3] X_8577435_SNP [dm6]	T	G	1.486e^-4	0.716	INTRON CG12065
3R	21300556	3R_21300556_SNP [dm3] 3R_25474834_SNP [dm6]	G	T	1.494e^-4	0.716	SYNONYMOUS_CODING Vps33B DOWNSTREAM CG4553	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7899321	2L_7899321_SNP [dm3] 2L_7899321_SNP [dm6]	C	T	1.501e^-4	0.716	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17680524	2R_17680524_SNP [dm3] 2R_21793019_SNP [dm6]	T	C	1.515e^-4	0.716	INTERGENIC
3L	8491385	3L_8491385_INS [dm3] 3L_8498285_INS [dm6]	T	TGATACTTA	1.519e^-4	0.716	INTRON CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26887999	3R_26887999_SNP [dm3] 3R_31062277_SNP [dm6]	A	C	1.519e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9135852	2R_9135852_DEL [dm3] 2R_13248347_DEL [dm6]	AA	A	1.524e^-4	0.716	DOWNSTREAM Mp20 & 1 other INTRON Mp20
2R	19136166	2R_19136166_SNP [dm3] 2R_23248643_SNP [dm6]	C	T	1.527e^-4	0.716	UPSTREAM RpL22-like INTERGENIC
3R	25416438	3R_25416438_SNP [dm3] 3R_29590716_SNP [dm6]	C	G	1.530e^-4	0.716	NON_SYNONYMOUS_CODING CG31041 UPSTREAM CG11470	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13652596	2R_13652596_SNP [dm3] 2R_17765091_SNP [dm6]	C	T	1.530e^-4	0.716	DOWNSTREAM CG5009 INTRON OstDelta	TF binding site mE1_TFBS_sens
3L	1365505	3L_1365505_SNP [dm3] 3L_1365505_SNP [dm6]	C	A	1.540e^-4	0.716	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
3R	14899507	3R_14899507_SNP [dm3] 3R_19073785_SNP [dm6]	T	C	1.549e^-4	0.716	INTRON cdi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9671462	X_9671462_SNP [dm3] X_9777429_SNP [dm6]	C	G	1.549e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	17841340	3R_17841340_SNP [dm3] 3R_22015618_SNP [dm6]	A	G	1.553e^-4	0.716	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	3455643	2L_3455643_SNP [dm3] 2L_3455643_SNP [dm6]	A	G	1.557e^-4	0.716	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad
3R	10986636	3R_10986636_SNP [dm3] 3R_15160914_SNP [dm6]	C	T	1.558e^-4	0.716	INTRON Gyc88E	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	8896582	2R_8896582_SNP [dm3] 2R_13009077_SNP [dm6]	T	G	1.559e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6282316	2L_6282316_SNP [dm3] 2L_6282316_SNP [dm6]	C	T	1.562e^-4	0.716	INTRON Ddr	TF binding site mE1_TFBS_chinmo
3L	1035548	3L_1035548_SNP [dm3] 3L_1035548_SNP [dm6]	T	C	1.563e^-4	0.716	UPSTREAM trio DOWNSTREAM bab1 INTRON CG9205	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	12444253	3L_12444253_SNP [dm3] 3L_12451153_SNP [dm6]	G	T	1.565e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13978680	3R_13978680_SNP [dm3] 3R_18152958_SNP [dm6]	T	A	1.566e^-4	0.716	SYNONYMOUS_CODING CG14316	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21000188	3R_21000188_SNP [dm3] 3R_25174466_SNP [dm6]	T	C	1.571e^-4	0.716	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	9326891	2L_9326891_SNP [dm3] 2L_9326891_SNP [dm6]	A	G	1.578e^-4	0.716	UPSTREAM CR45457 & 1 other DOWNSTREAM CR45456 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18372015	3R_18372015_SNP [dm3] 3R_22546293_SNP [dm6]	C	A	1.579e^-4	0.716	UPSTREAM AdipoR INTRON AdipoR	TF binding site BDTNP1_TFBS_twi
3L	5068142	3L_5068142_SNP [dm3] 3L_5068142_SNP [dm6]	C	A	1.586e^-4	0.716	INTRON Con
2L	15419989	2L_15419989_SNP [dm3] 2L_15419989_SNP [dm6]	A	G	1.589e^-4	0.716	INTERGENIC
3R	23030416	3R_23030416_SNP [dm3] 3R_27204694_SNP [dm6]	G	A	1.592e^-4	0.716	INTERGENIC	regulatory region REDfly_CRMs
2L	3555294	2L_3555294_SNP [dm3] 2L_3555294_SNP [dm6]	A	C	1.597e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	6088622	2R_6088622_SNP [dm3] 2R_10201117_SNP [dm6]	C	A	1.599e^-4	0.716	INTERGENIC
3R	22859757	3R_22859757_SNP [dm3] 3R_27034035_SNP [dm6]	C	A	1.603e^-4	0.716	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
3R	10600498	3R_10600498_SNP [dm3] 3R_14774776_SNP [dm6]	C	T	1.610e^-4	0.716	INTRON jvl
2L	7902309	2L_7902309_SNP [dm3] 2L_7902309_SNP [dm6]	G	T	1.614e^-4	0.716	INTRON Snoo
2L	5116024	2L_5116024_SNP [dm3] 2L_5116024_SNP [dm6]	A	G	1.619e^-4	0.716	INTRON Msp300
3R	25416515	3R_25416515_SNP [dm3] 3R_29590793_SNP [dm6]	G	A	1.619e^-4	0.716	SYNONYMOUS_CODING CG31041	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17248649	3L_17248649_SNP [dm3] 3L_17255549_SNP [dm6]	A	C	1.624e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5015330	3R_5015330_SNP [dm3] 3R_9189608_SNP [dm6]	G	A	1.627e^-4	0.716	INTRON pum
3R	5907868	3R_5907868_SNP [dm3] 3R_10082146_SNP [dm6]	G	A	1.629e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12485238	2R_12485238_INS [dm3] 2R_16597733_INS [dm6]	C	CTCGCGGAGC	1.632e^-4	0.716	INTRON CG8303
2L	5686534	2L_5686534_DEL [dm3] 2L_5686534_DEL [dm6]	ATATGTACA	A	1.635e^-4	0.716	INTERGENIC
X	6214042	X_6214042_SNP [dm3] X_6320009_SNP [dm6]	A	T	1.639e^-4	0.716	INTRON CG15894
3L	17032591	3L_17032591_SNP [dm3] 3L_17039491_SNP [dm6]	T	A	1.644e^-4	0.716	INTRON scaf6	TF binding site mE1_TFBS_cad
3L	20738495	3L_20738495_SNP [dm3] 3L_20745395_SNP [dm6]	A	T	1.645e^-4	0.716	DOWNSTREAM CG13252 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11153884	3L_11153884_SNP [dm3] 3L_11160784_SNP [dm6]	T	A	1.647e^-4	0.716	NON_SYNONYMOUS_CODING CG32082
2L	5307531	2L_5307531_SNP [dm3] 2L_5307531_SNP [dm6]	C	T	1.647e^-4	0.716	INTRON vri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	1698167	3R_1698167_SNP [dm3] 3R_5872445_SNP [dm6]	C	T	1.649e^-4	0.716	INTRON CG34113
2R	13766284	2R_13766284_SNP [dm3] 2R_17878779_SNP [dm6]	A	G	1.654e^-4	0.716	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
3R	16902297	3R_16902297_SNP [dm3] 3R_21076575_SNP [dm6]	A	G	1.656e^-4	0.716	DOWNSTREAM HHEX INTRON dmrt93B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21552110	3L_21552110_DEL [dm3] 3L_21559010_DEL [dm6]	GTTG	G	1.658e^-4	0.716	UTR_3_PRIME CapaR UPSTREAM CG7173
2L	10870500	2L_10870500_SNP [dm3] 2L_10870500_SNP [dm6]	G	A	1.659e^-4	0.716	SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
3L	8872828	3L_8872828_SNP [dm3] 3L_8879728_SNP [dm6]	G	A	1.664e^-4	0.716	INTRON dally
2L	4942123	2L_4942123_SNP [dm3] 2L_4942123_SNP [dm6]	T	A	1.667e^-4	0.716	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
3R	22926107	3R_22926107_SNP [dm3] 3R_27100385_SNP [dm6]	A	T	1.670e^-4	0.716	UPSTREAM eater INTERGENIC	regulatory region REDfly_CRMs
2L	6689614	2L_6689614_SNP [dm3] 2L_6689614_SNP [dm6]	A	C	1.678e^-4	0.716	UPSTREAM Tsp DOWNSTREAM Tsp INTRON Tsp
2L	8622113	2L_8622113_SNP [dm3] 2L_8622113_SNP [dm6]	T	C	1.686e^-4	0.716	INTRON Sema-1a
X	3122553	X_3122553_SNP [dm3] X_3228520_SNP [dm6]	T	G	1.687e^-4	0.716	INTRON dnc
2L	14664909	2L_14664909_SNP [dm3] 2L_14664909_SNP [dm6]	G	C	1.687e^-4	0.716	INTRON osp
3L	6763131	3L_6763131_SNP [dm3] 3L_6770031_SNP [dm6]	T	A	1.695e^-4	0.716	INTERGENIC
2R	6289420	2R_6289420_SNP [dm3] 2R_10401915_SNP [dm6]	G	T	1.696e^-4	0.716	INTRON CG42732
3R	22926111	3R_22926111_DEL [dm3] 3R_27100389_DEL [dm6]	TAC	T	1.699e^-4	0.716	UPSTREAM eater INTERGENIC	regulatory region REDfly_CRMs
2R	8720515	2R_8720515_SNP [dm3] 2R_12833010_SNP [dm6]	G	A	1.700e^-4	0.716	INTERGENIC
3L	18628943	3L_18628943_SNP [dm3] 3L_18635843_SNP [dm6]	C	A	1.709e^-4	0.716	INTRON MYPT-75D
X	3279306	X_3279306_SNP [dm3] X_3385273_SNP [dm6]	C	T	1.710e^-4	0.716	SYNONYMOUS_CODING dm INTRON CR44999
3R	12255018	3R_12255018_SNP [dm3] 3R_16429296_SNP [dm6]	A	T	1.716e^-4	0.716	DOWNSTREAM CR45631 INTERGENIC
2L	15460739	2L_15460739_SNP [dm3] 2L_15460739_SNP [dm6]	G	T	1.739e^-4	0.716	INTERGENIC
2R	3020935	2R_3020935_SNP [dm3] 2R_7133430_SNP [dm6]	C	T	1.741e^-4	0.716	INTERGENIC
3R	21032012	3R_21032012_SNP [dm3] 3R_25206290_SNP [dm6]	G	A	1.742e^-4	0.716	INTRON CG13654 & 1 other
3R	10354861	3R_10354861_SNP [dm3] 3R_14529139_SNP [dm6]	A	T	1.750e^-4	0.716	INTRON Pde6
2L	7004267	2L_7004267_SNP [dm3] 2L_7004267_SNP [dm6]	A	T	1.751e^-4	0.716	INTRON uif	TF binding site BDTNP1_TFBS_dl
2R	11590076	2R_11590076_SNP [dm3] 2R_15702571_SNP [dm6]	T	G	1.751e^-4	0.716	UPSTREAM CG30080 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13652586	2R_13652586_SNP [dm3] 2R_17765081_SNP [dm6]	C	T	1.757e^-4	0.716	DOWNSTREAM CG5009 INTRON OstDelta	TF binding site mE1_TFBS_sens
3L	20969144	3L_20969144_SNP [dm3] 3L_20976044_SNP [dm6]	C	T	1.768e^-4	0.716	INTERGENIC
3R	25415524	3R_25415524_SNP [dm3] 3R_29589802_SNP [dm6]	G	A	1.774e^-4	0.716	UPSTREAM CG11470 DOWNSTREAM CG31041 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1650960	3L_1650960_SNP [dm3] 3L_1650960_SNP [dm6]	C	T	1.776e^-4	0.716	SYNONYMOUS_CODING CG13920 DOWNSTREAM CG7967
2R	5931205	2R_5931205_SNP [dm3] 2R_10043700_SNP [dm6]	C	A	1.790e^-4	0.716	UPSTREAM CR44295 & 1 other INTRON oys
3L	6900403	3L_6900403_SNP [dm3] 3L_6907303_SNP [dm6]	C	T	1.794e^-4	0.716	INTERGENIC
3L	17248616	3L_17248616_SNP [dm3] 3L_17255516_SNP [dm6]	T	C	1.810e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5997542	X_5997542_SNP [dm3] X_6103509_SNP [dm6]	A	G	1.812e^-4	0.716	SYNONYMOUS_CODING Nep1 DOWNSTREAM Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14899277	3R_14899277_SNP [dm3] 3R_19073555_SNP [dm6]	T	A	1.815e^-4	0.716	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	5241610	3L_5241610_SNP [dm3] 3L_5248510_SNP [dm6]	G	C	1.818e^-4	0.716	UPSTREAM shep INTRON shep
3R	12146172	3R_12146172_DEL [dm3] 3R_16320450_DEL [dm6]	AC	A	1.820e^-4	0.716	UPSTREAM tRNA:F2:89BC INTRON Sulf1
3R	9171384	3R_9171384_SNP [dm3] 3R_13345662_SNP [dm6]	G	A	1.820e^-4	0.716	DOWNSTREAM PK2-R1 INTERGENIC
3R	9488910	3R_9488910_SNP [dm3] 3R_13663188_SNP [dm6]	T	C	1.820e^-4	0.716	UTR_3_PRIME B52 INTRON B52
3R	13707790	3R_13707790_SNP [dm3] 3R_17882068_SNP [dm6]	C	T	1.826e^-4	0.716	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5694299	3R_5694299_SNP [dm3] 3R_9868577_SNP [dm6]	A	G	1.828e^-4	0.716	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3R	4436829	3R_4436829_SNP [dm3] 3R_8611107_SNP [dm6]	A	T	1.831e^-4	0.716	INTRON 5-HT2B
2R	15405030	2R_15405030_SNP [dm3] 2R_19517525_SNP [dm6]	C	T	1.834e^-4	0.716	DOWNSTREAM sm INTERGENIC
3L	20813574	3L_20813574_SNP [dm3] 3L_20820474_SNP [dm6]	A	G	1.836e^-4	0.716	UTR_5_PRIME Pka-R1 INTRON Pka-R1
3R	6425184	3R_6425184_SNP [dm3] 3R_10599462_SNP [dm6]	C	T	1.838e^-4	0.716	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4556477	2R_4556477_SNP [dm3] 2R_8668972_SNP [dm6]	T	C	1.842e^-4	0.716	INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	19348647	2R_19348647_INS [dm3] 2R_23461124_INS [dm6]	A	AAA	1.843e^-4	0.716	INTRON CG43795
3R	12136257	3R_12136257_SNP [dm3] 3R_16310535_SNP [dm6]	T	C	1.845e^-4	0.716	DOWNSTREAM Sulf1 INTERGENIC
3R	25525791	3R_25525791_SNP [dm3] 3R_29700069_SNP [dm6]	C	A	1.848e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19707123	2R_19707123_SNP [dm3] 2R_23819600_SNP [dm6]	C	T	1.854e^-4	0.716	UPSTREAM CG5549 INTERGENIC
3R	14123143	3R_14123143_SNP [dm3] 3R_18297421_SNP [dm6]	A	G	1.874e^-4	0.716	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	19920866	2R_19920866_SNP [dm3] 2R_24033343_SNP [dm6]	G	A	1.875e^-4	0.716	SYNONYMOUS_CODING Chi UPSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	21829876	3R_21829876_SNP [dm3] 3R_26004154_SNP [dm6]	T	C	1.881e^-4	0.716	UPSTREAM CR45038 DOWNSTREAM E_spl_mbeta-HLH INTERGENIC	TF binding site mE1_TFBS_sens
X	6214043	X_6214043_SNP [dm3] X_6320010_SNP [dm6]	G	C	1.890e^-4	0.716	INTRON CG15894
3L	17159017	3L_17159017_DEL [dm3] 3L_17165917_DEL [dm6]	CTGTTCAGCGAAACG...	C	1.895e^-4	0.716	UPSTREAM CR43433 INTRON Rbp6
2R	19236942	2R_19236942_SNP [dm3] 2R_23349419_SNP [dm6]	G	C	1.897e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	21264264	3L_21264264_SNP [dm3] 3L_21271164_SNP [dm6]	A	G	1.899e^-4	0.716	UTR_3_PRIME AcCoAS UPSTREAM CG9389 DOWNSTREAM AcCoAS
3L	18643523	3L_18643523_DEL [dm3] 3L_18650423_DEL [dm6]	GCAG	G	1.900e^-4	0.716	INTRON MYPT-75D
2R	15425202	2R_15425202_SNP [dm3] 2R_19537697_SNP [dm6]	G	A	1.900e^-4	0.716	INTRON sm
3L	8872949	3L_8872949_SNP [dm3] 3L_8879849_SNP [dm6]	T	G	1.900e^-4	0.716	INTRON dally
X	3981797	X_3981797_SNP [dm3] X_4087764_SNP [dm6]	C	A	1.903e^-4	0.716	DOWNSTREAM CG43689 INTRON CG43689
3L	20830759	3L_20830759_SNP [dm3] 3L_20837659_SNP [dm6]	C	G	1.908e^-4	0.716	UTR_5_PRIME CG13255 UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288
2R	9135781	2R_9135781_SNP [dm3] 2R_13248276_SNP [dm6]	G	T	1.909e^-4	0.716	DOWNSTREAM Mp20 & 1 other INTRON Mp20
2L	4941988	2L_4941988_SNP [dm3] 2L_4941988_SNP [dm6]	G	T	1.913e^-4	0.716	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
3L	15897438	3L_15897438_SNP [dm3] 3L_15904338_SNP [dm6]	G	A	1.914e^-4	0.716	SYNONYMOUS_CODING sff
2R	19790072	2R_19790072_SNP [dm3] 2R_23902549_SNP [dm6]	A	T	1.917e^-4	0.716	INTRON Lpt
2R	16950468	2R_16950468_SNP [dm3] 2R_21062963_SNP [dm6]	G	A	1.922e^-4	0.716	SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo
3R	25979416	3R_25979416_SNP [dm3] 3R_30153694_SNP [dm6]	A	T	1.923e^-4	0.716	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	6560977	2L_6560977_SNP [dm3] 2L_6560977_SNP [dm6]	T	C	1.923e^-4	0.716	SYNONYMOUS_CODING CG9596 DOWNSTREAM CG11043	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	4345372	3L_4345372_INS [dm3] 3L_4345372_INS [dm6]	A	ATACACT	1.925e^-4	0.716	UPSTREAM CR45156 INTRON Cip4
X	9748309	X_9748309_SNP [dm3] X_9854276_SNP [dm6]	G	T	1.928e^-4	0.716	UTR_3_PRIME CG32698
X	18764868	X_18764868_SNP [dm3] X_18870835_SNP [dm6]	A	G	1.930e^-4	0.716	INTRON CG34401
2L	8451844	2L_8451844_SNP [dm3] 2L_8451844_SNP [dm6]	T	A	1.932e^-4	0.716	UTR_5_PRIME fu12 UPSTREAM fu12 INTRON fu12
3R	9875622	3R_9875622_INS [dm3] 3R_14049900_INS [dm6]	A	AACCTAAA	1.947e^-4	0.716	INTERGENIC
3L	21001014	3L_21001014_SNP [dm3] 3L_21007914_SNP [dm6]	G	T	1.947e^-4	0.716	INTRON skd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17841421	3R_17841421_SNP [dm3] 3R_22015699_SNP [dm6]	C	G	1.948e^-4	0.716	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	3325231	X_3325231_INS [dm3] X_3431198_INS [dm6]	G	GCAAAATGTATGTTTTG...	1.953e^-4	0.716	INTRON CR44999 & 1 other
2R	17680483	2R_17680483_SNP [dm3] 2R_21792978_SNP [dm6]	T	C	1.959e^-4	0.716	INTERGENIC
2R	6239690	2R_6239690_SNP [dm3] 2R_10352185_SNP [dm6]	G	A	1.959e^-4	0.716	UPSTREAM CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
3L	10902167	3L_10902167_SNP [dm3] 3L_10909067_SNP [dm6]	C	G	1.964e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19425869	2L_19425869_SNP [dm3] 2L_19425869_SNP [dm6]	A	T	1.966e^-4	0.716	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14201032	3R_14201032_SNP [dm3] 3R_18375310_SNP [dm6]	G	A	1.969e^-4	0.716	EXON CR44946	TF binding site mE1_TFBS_HSA
3L	20189352	3L_20189352_SNP [dm3] 3L_20196252_SNP [dm6]	T	G	1.976e^-4	0.716	INTRON CG42674
3L	5361571	3L_5361571_INS [dm3] 3L_5368471_INS [dm6]	T	TG	1.976e^-4	0.716	UPSTREAM CG10635 & 1 other INTERGENIC
3L	21903143	3L_21903143_SNP [dm3] 3L_21910043_SNP [dm6]	G	C	1.977e^-4	0.716	INTRON mub
3R	20708170	3R_20708170_SNP [dm3] 3R_24882448_SNP [dm6]	G	T	1.984e^-4	0.716	DOWNSTREAM CG11089 INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5211969	2L_5211969_SNP [dm3] 2L_5211969_SNP [dm6]	G	T	1.989e^-4	0.716	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
2L	19425924	2L_19425924_SNP [dm3] 2L_19425924_SNP [dm6]	C	A	2.003e^-4	0.716	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17248654	3L_17248654_SNP [dm3] 3L_17255554_SNP [dm6]	A	T	2.005e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8766182	3L_8766182_SNP [dm3] 3L_8773082_SNP [dm6]	C	T	2.009e^-4	0.716	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	5305150	3L_5305150_SNP [dm3] 3L_5312050_SNP [dm6]	A	C	2.012e^-4	0.716	INTERGENIC
3R	6662085	3R_6662085_SNP [dm3] 3R_10836363_SNP [dm6]	C	A	2.014e^-4	0.716	INTRON Cad86C
X	14880693	X_14880693_SNP [dm3] X_14986660_SNP [dm6]	T	A	2.014e^-4	0.716	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6151988	3L_6151988_SNP [dm3] 3L_6158888_SNP [dm6]	T	C	2.015e^-4	0.716	UPSTREAM Cpr65Ay INTERGENIC
2L	5116087	2L_5116087_SNP [dm3] 2L_5116087_SNP [dm6]	C	A	2.019e^-4	0.716	INTRON Msp300
3R	13784283	3R_13784283_SNP [dm3] 3R_17958561_SNP [dm6]	A	C	2.023e^-4	0.716	INTRON cpo
2L	13668506	2L_13668506_SNP [dm3] 2L_13668506_SNP [dm6]	T	A	2.035e^-4	0.716	INTRON CG18507
2L	10049753	2L_10049753_SNP [dm3] 2L_10049753_SNP [dm6]	C	G	2.037e^-4	0.716	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5221453	X_5221453_SNP [dm3] X_5327420_SNP [dm6]	G	A	2.040e^-4	0.716	SYNONYMOUS_CODING CG3309 DOWNSTREAM Mcm3
3L	18196697	3L_18196697_SNP [dm3] 3L_18203597_SNP [dm6]	T	C	2.046e^-4	0.716	UTR_3_PRIME CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	14052948	3L_14052948_SNP [dm3] 3L_14059848_SNP [dm6]	A	G	2.055e^-4	0.716	INTRON CG32138
3L	1841620	3L_1841620_SNP [dm3] 3L_1841620_SNP [dm6]	A	G	2.060e^-4	0.716	INTRON Cpr62Bc
X	9666178	X_9666178_SNP [dm3] X_9772145_SNP [dm6]	T	G	2.063e^-4	0.716	INTERGENIC
X	17655819	X_17655819_SNP [dm3] X_17761786_SNP [dm6]	C	A	2.066e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12129615	3R_12129615_SNP [dm3] 3R_16303893_SNP [dm6]	A	T	2.067e^-4	0.716	UTR_3_PRIME gish
3L	12024281	3L_12024281_SNP [dm3] 3L_12031181_SNP [dm6]	T	A	2.068e^-4	0.716	INTRON rols	TF binding site mE1_TFBS_cad
3R	14201692	3R_14201692_SNP [dm3] 3R_18375970_SNP [dm6]	A	T	2.071e^-4	0.716	EXON CR44946
3R	16811401	3R_16811401_SNP [dm3] 3R_20985679_SNP [dm6]	C	T	2.085e^-4	0.716	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
2R	19620722	2R_19620722_SNP [dm3] 2R_23733199_SNP [dm6]	T	C	2.085e^-4	0.716	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5282617	2R_5282617_SNP [dm3] 2R_9395112_SNP [dm6]	C	G	2.086e^-4	0.716	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad
2L	7800690	2L_7800690_SNP [dm3] 2L_7800690_SNP [dm6]	T	A	2.092e^-4	0.716	UPSTREAM Herp DOWNSTREAM cdc14 INTRON r2d2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9387843	2R_9387843_SNP [dm3] 2R_13500338_SNP [dm6]	T	A	2.098e^-4	0.716	UPSTREAM mars INTRON drk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3608164	2L_3608164_SNP [dm3] 2L_3608164_SNP [dm6]	T	A	2.099e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19551588	2R_19551588_SNP [dm3] 2R_23664065_SNP [dm6]	A	T	2.118e^-4	0.716	INTRON Pde8
2R	19551589	2R_19551589_SNP [dm3] 2R_23664066_SNP [dm6]	A	C	2.118e^-4	0.716	INTRON Pde8
3L	18095289	3L_18095289_SNP [dm3] 3L_18102189_SNP [dm6]	T	C	2.126e^-4	0.716	INTRON CG13698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	5094223	3L_5094223_SNP [dm3] 3L_5094223_SNP [dm6]	G	T	2.131e^-4	0.716	INTERGENIC
2R	14288707	2R_14288707_SNP [dm3] 2R_18401202_SNP [dm6]	A	C	2.135e^-4	0.716	NON_SYNONYMOUS_CODING GstE3 UPSTREAM CR43687 DOWNSTREAM GstE2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13652571	2R_13652571_SNP [dm3] 2R_17765066_SNP [dm6]	G	T	2.136e^-4	0.716	DOWNSTREAM CG5009 INTRON OstDelta	TF binding site mE1_TFBS_sens
2R	5010086	2R_5010086_SNP [dm3] 2R_9122581_SNP [dm6]	G	C	2.138e^-4	0.716	DOWNSTREAM Su_var_2-10 & 1 other INTRON GstE13
2L	15144371	2L_15144371_SNP [dm3] 2L_15144371_SNP [dm6]	G	A	2.139e^-4	0.716	INTERGENIC
2R	17714850	2R_17714850_SNP [dm3] 2R_21827345_SNP [dm6]	G	A	2.144e^-4	0.716	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
2R	12023648	2R_12023648_SNP [dm3] 2R_16136143_SNP [dm6]	T	G	2.146e^-4	0.716	INTRON spin
2R	15031771	2R_15031771_DEL [dm3] 2R_19144266_DEL [dm6]	GT	G	2.146e^-4	0.716	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17515670	3R_17515670_SNP [dm3] 3R_21689948_SNP [dm6]	C	T	2.158e^-4	0.716	INTRON CG31176
3L	20374088	3L_20374088_INS [dm3] 3L_20380988_INS [dm6]	A	AA	2.164e^-4	0.716	INTRON RhoBTB	TF binding site mE1_TFBS_cad
3L	1278677	3L_1278677_SNP [dm3] 3L_1278677_SNP [dm6]	A	G	2.164e^-4	0.716	INTRON CG32333
3R	27473820	3R_27473820_SNP [dm3] 3R_31648098_SNP [dm6]	A	T	2.172e^-4	0.716	INTRON kek6
3L	14245245	3L_14245245_SNP [dm3] 3L_14252145_SNP [dm6]	C	T	2.174e^-4	0.716	INTERGENIC
3L	21813051	3L_21813051_SNP [dm3] 3L_21819951_SNP [dm6]	C	T	2.183e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19894793	2R_19894793_SNP [dm3] 2R_24007270_SNP [dm6]	C	T	2.185e^-4	0.716	SYNONYMOUS_CODING Unc-89
3R	4436826	3R_4436826_SNP [dm3] 3R_8611104_SNP [dm6]	G	A	2.186e^-4	0.716	INTRON 5-HT2B
3R	5025546	3R_5025546_SNP [dm3] 3R_9199824_SNP [dm6]	G	T	2.193e^-4	0.716	INTRON pum
X	15263186	X_15263186_SNP [dm3] X_15369153_SNP [dm6]	A	C	2.193e^-4	0.716	INTRON acj6
2R	9962589	2R_9962589_SNP [dm3] 2R_14075084_SNP [dm6]	T	G	2.197e^-4	0.716	INTRON Prosap
3R	13978588	3R_13978588_SNP [dm3] 3R_18152866_SNP [dm6]	T	C	2.198e^-4	0.716	NON_SYNONYMOUS_CODING CG14316	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7891086	3R_7891086_SNP [dm3] 3R_12065364_SNP [dm6]	A	G	2.202e^-4	0.716	INTERGENIC
X	10252888	X_10252888_SNP [dm3] X_10358855_SNP [dm6]	G	A	2.204e^-4	0.716	SPLICE_SITE_REGION l_1_G0289 INTRON l_1_G0289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17930814	2L_17930814_SNP [dm3] 2L_17930814_SNP [dm6]	G	A	2.209e^-4	0.716	INTERGENIC
3L	5361589	3L_5361589_SNP [dm3] 3L_5368489_SNP [dm6]	T	A	2.215e^-4	0.716	UPSTREAM CG10635 & 1 other INTERGENIC
3L	8656067	3L_8656067_SNP [dm3] 3L_8662967_SNP [dm6]	T	A	2.217e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15199577	2L_15199577_SNP [dm3] 2L_15199577_SNP [dm6]	C	G	2.229e^-4	0.716	INTRON CG4168
X	10208103	X_10208103_SNP [dm3] X_10314070_SNP [dm6]	T	C	2.230e^-4	0.716	INTRON alpha-Man-I
3L	18638767	3L_18638767_SNP [dm3] 3L_18645667_SNP [dm6]	A	G	2.234e^-4	0.716	INTRON MYPT-75D
3L	16739350	3L_16739350_SNP [dm3] 3L_16746250_SNP [dm6]	T	G	2.236e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	17248630	3L_17248630_SNP [dm3] 3L_17255530_SNP [dm6]	T	G	2.245e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17358223	2R_17358223_SNP [dm3] 2R_21470718_SNP [dm6]	T	A	2.247e^-4	0.716	INTRON Sdc
3L	22452427	3L_22452427_SNP [dm3] 3L_22459327_SNP [dm6]	A	G	2.248e^-4	0.716	UTR_3_PRIME laza	TF binding site mE1_TFBS_cad
X	5660001	X_5660001_SNP [dm3] X_5765968_SNP [dm6]	A	G	2.252e^-4	0.716	UTR_3_PRIME CG3097 INTRON CG42699	TF binding site mE1_TFBS_chinmo
3L	16471496	3L_16471496_SNP [dm3] 3L_16478396_SNP [dm6]	G	C	2.254e^-4	0.716	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3L	11403108	3L_11403108_SNP [dm3] 3L_11410008_SNP [dm6]	T	A	2.255e^-4	0.716	INTERGENIC
3L	7199896	3L_7199896_SNP [dm3] 3L_7206796_SNP [dm6]	T	G	2.259e^-4	0.716	INTERGENIC
3R	13707805	3R_13707805_SNP [dm3] 3R_17882083_SNP [dm6]	G	A	2.261e^-4	0.716	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25365084	3R_25365084_SNP [dm3] 3R_29539362_SNP [dm6]	T	C	2.263e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19895544	2R_19895544_SNP [dm3] 2R_24008021_SNP [dm6]	C	A	2.264e^-4	0.716	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
3R	4436791	3R_4436791_SNP [dm3] 3R_8611069_SNP [dm6]	A	G	2.264e^-4	0.716	INTRON 5-HT2B
3L	2796940	3L_2796940_SNP [dm3] 3L_2796940_SNP [dm6]	A	T	2.265e^-4	0.716	INTRON CG43444
3L	5361282	3L_5361282_SNP [dm3] 3L_5368182_SNP [dm6]	G	A	2.268e^-4	0.716	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
2L	7947487	2L_7947487_SNP [dm3] 2L_7947487_SNP [dm6]	G	A	2.274e^-4	0.716	INTRON Snoo
3R	10949461	3R_10949461_SNP [dm3] 3R_15123739_SNP [dm6]	G	A	2.286e^-4	0.716	INTRON CG42788
3L	20798024	3L_20798024_SNP [dm3] 3L_20804924_SNP [dm6]	G	A	2.288e^-4	0.716	SYNONYMOUS_CODING Spc105R
2R	15094179	2R_15094179_SNP [dm3] 2R_19206674_SNP [dm6]	G	A	2.306e^-4	0.716	INTRON hppy
3L	18638776	3L_18638776_SNP [dm3] 3L_18645676_SNP [dm6]	T	A	2.308e^-4	0.716	INTRON MYPT-75D
3R	5223424	3R_5223424_DEL [dm3] 3R_9397702_DEL [dm6]	TC	T	2.311e^-4	0.716	UPSTREAM Or85f INTERGENIC
3L	1841581	3L_1841581_SNP [dm3] 3L_1841581_SNP [dm6]	T	G	2.312e^-4	0.716	INTRON Cpr62Bc
3R	13696620	3R_13696620_SNP [dm3] 3R_17870898_SNP [dm6]	A	T	2.317e^-4	0.716	UTR_3_PRIME tinc
2L	2605671	2L_2605671_SNP [dm3] 2L_2605671_SNP [dm6]	T	C	2.321e^-4	0.716	INTERGENIC
2R	18278631	2R_18278631_SNP [dm3] 2R_22391126_SNP [dm6]	T	G	2.321e^-4	0.716	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5296969	2L_5296969_SNP [dm3] 2L_5296969_SNP [dm6]	G	C	2.337e^-4	0.716	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19790073	2R_19790073_SNP [dm3] 2R_23902550_SNP [dm6]	T	A	2.343e^-4	0.716	INTRON Lpt
3R	3601909	3R_3601909_SNP [dm3] 3R_7776187_SNP [dm6]	G	T	2.343e^-4	0.716	INTERGENIC
3L	17248602	3L_17248602_SNP [dm3] 3L_17255502_SNP [dm6]	G	T	2.347e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6214018	X_6214018_SNP [dm3] X_6319985_SNP [dm6]	A	G	2.349e^-4	0.716	INTRON CG15894
3L	1997906	3L_1997906_SNP [dm3] 3L_1997906_SNP [dm6]	A	G	2.352e^-4	0.716	INTERGENIC
2L	967368	2L_967368_SNP [dm3] 2L_967368_SNP [dm6]	G	A	2.352e^-4	0.716	INTERGENIC
3R	10177337	3R_10177337_SNP [dm3] 3R_14351615_SNP [dm6]	A	T	2.355e^-4	0.716	INTRON NK7.1
2L	4308062	2L_4308062_SNP [dm3] 2L_4308062_SNP [dm6]	C	T	2.362e^-4	0.716	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3475295	3R_3475295_SNP [dm3] 3R_7649573_SNP [dm6]	G	A	2.363e^-4	0.716	INTERGENIC
3R	24386957	3R_24386957_SNP [dm3] 3R_28561235_SNP [dm6]	T	A	2.366e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	812199	3R_812199_SNP [dm3] 3R_4986477_SNP [dm6]	T	C	2.367e^-4	0.716	UPSTREAM CR43424 DOWNSTREAM CG2022 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10428385	X_10428385_SNP [dm3] X_10534352_SNP [dm6]	G	C	2.370e^-4	0.716	INTRON spri
2R	6088366	2R_6088366_SNP [dm3] 2R_10200861_SNP [dm6]	G	A	2.371e^-4	0.716	INTERGENIC
2R	6088367	2R_6088367_SNP [dm3] 2R_10200862_SNP [dm6]	C	G	2.371e^-4	0.716	INTERGENIC
X	3325224	X_3325224_SNP [dm3] X_3431191_SNP [dm6]	A	T	2.374e^-4	0.716	INTRON CR44999 & 1 other
3R	4203478	3R_4203478_SNP [dm3] 3R_8377756_SNP [dm6]	G	T	2.389e^-4	0.716	INTRON CG45263
3R	5804369	3R_5804369_SNP [dm3] 3R_9978647_SNP [dm6]	T	C	2.390e^-4	0.716	INTRON Glut4EF	TF binding site mE1_TFBS_Trl
2R	8891260	2R_8891260_SNP [dm3] 2R_13003755_SNP [dm6]	C	T	2.395e^-4	0.716	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	8908623	X_8908623_SNP [dm3] X_9014590_SNP [dm6]	G	A	2.400e^-4	0.716	INTRON rdgA & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9905349	X_9905349_SNP [dm3] X_10011316_SNP [dm6]	T	G	2.402e^-4	0.716	NON_SYNONYMOUS_CODING CG2990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1035520	3L_1035520_DEL [dm3] 3L_1035520_DEL [dm6]	CGC	C	2.406e^-4	0.716	UPSTREAM trio DOWNSTREAM bab1 INTRON CG9205	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	15033423	2R_15033423_SNP [dm3] 2R_19145918_SNP [dm6]	A	G	2.409e^-4	0.716	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_inv
3L	13994032	3L_13994032_SNP [dm3] 3L_14000932_SNP [dm6]	T	C	2.412e^-4	0.716	SYNONYMOUS_CODING CG8783	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16388492	3R_16388492_SNP [dm3] 3R_20562770_SNP [dm6]	T	A	2.413e^-4	0.716	NON_SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7032489	2R_7032489_SNP [dm3] 2R_11144984_SNP [dm6]	A	G	2.415e^-4	0.716	INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20830760	3L_20830760_SNP [dm3] 3L_20837660_SNP [dm6]	G	A	2.418e^-4	0.716	UTR_5_PRIME CG13255 UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288
3R	19063655	3R_19063655_SNP [dm3] 3R_23237933_SNP [dm6]	C	T	2.430e^-4	0.716	INTRON CG4467
3R	13696584	3R_13696584_SNP [dm3] 3R_17870862_SNP [dm6]	G	T	2.432e^-4	0.716	UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3R	6848591	3R_6848591_SNP [dm3] 3R_11022869_SNP [dm6]	G	C	2.437e^-4	0.716	INTRON CG34114	TF binding site mE1_TFBS_ttk
3L	15000176	3L_15000176_SNP [dm3] 3L_15007076_SNP [dm6]	C	T	2.441e^-4	0.716	INTRON Reck
3R	10354864	3R_10354864_SNP [dm3] 3R_14529142_SNP [dm6]	T	G	2.446e^-4	0.716	INTRON Pde6
2L	17931014	2L_17931014_SNP [dm3] 2L_17931014_SNP [dm6]	T	G	2.449e^-4	0.716	INTERGENIC
3R	5723909	3R_5723909_SNP [dm3] 3R_9898187_SNP [dm6]	A	T	2.454e^-4	0.716	INTRON Glut4EF
3L	5361501	3L_5361501_SNP [dm3] 3L_5368401_SNP [dm6]	A	G	2.458e^-4	0.716	UPSTREAM CG10635 & 1 other INTERGENIC
3L	5361576	3L_5361576_SNP [dm3] 3L_5368476_SNP [dm6]	A	C	2.459e^-4	0.716	UPSTREAM CG10635 & 1 other INTERGENIC
3R	13845627	3R_13845627_SNP [dm3] 3R_18019905_SNP [dm6]	A	C	2.461e^-4	0.716	INTRON DNaseII
2R	19924702	2R_19924702_SNP [dm3] 2R_24037179_SNP [dm6]	T	C	2.464e^-4	0.716	UPSTREAM IntS1 DOWNSTREAM MAN1 INTRON Not11	TF binding site mE1_TFBS_sens
X	9796288	X_9796288_SNP [dm3] X_9902255_SNP [dm6]	T	A	2.466e^-4	0.716	INTERGENIC
3R	13696430	3R_13696430_SNP [dm3] 3R_17870708_SNP [dm6]	C	T	2.472e^-4	0.716	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
2R	4863999	2R_4863999_SNP [dm3] 2R_8976494_SNP [dm6]	T	C	2.474e^-4	0.716	INTRON CG8213
3L	20042314	3L_20042314_SNP [dm3] 3L_20049214_SNP [dm6]	T	C	2.477e^-4	0.716	INTERGENIC
3L	16471426	3L_16471426_SNP [dm3] 3L_16478326_SNP [dm6]	G	A	2.478e^-4	0.716	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3R	17841418	3R_17841418_SNP [dm3] 3R_22015696_SNP [dm6]	G	C	2.481e^-4	0.716	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	14246482	3L_14246482_SNP [dm3] 3L_14253382_SNP [dm6]	T	A	2.482e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	5692778	X_5692778_SNP [dm3] X_5798745_SNP [dm6]	T	C	2.484e^-4	0.716	INTERGENIC
3R	10354857	3R_10354857_SNP [dm3] 3R_14529135_SNP [dm6]	A	T	2.486e^-4	0.716	INTRON Pde6
3L	17248595	3L_17248595_SNP [dm3] 3L_17255495_SNP [dm6]	G	C	2.502e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16840747	2R_16840747_DEL [dm3] 2R_20953242_DEL [dm6]	TTGCTTTTAGG...	T	2.508e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5080656	2L_5080656_SNP [dm3] 2L_5080656_SNP [dm6]	T	A	2.509e^-4	0.716	INTRON pgant5
2L	12580599	2L_12580599_SNP [dm3] 2L_12580599_SNP [dm6]	C	T	2.510e^-4	0.716	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	1841621	3L_1841621_SNP [dm3] 3L_1841621_SNP [dm6]	A	G	2.511e^-4	0.716	INTRON Cpr62Bc
3R	25419888	3R_25419888_SNP [dm3] 3R_29594166_SNP [dm6]	G	C	2.515e^-4	0.716	SPLICE_SITE_REGION alph INTRON alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7479739	3L_7479739_SNP [dm3] 3L_7486639_SNP [dm6]	G	A	2.518e^-4	0.716	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2136566	3R_2136566_SNP [dm3] 3R_6310844_SNP [dm6]	T	C	2.519e^-4	0.716	NON_SYNONYMOUS_CODING CG31560 UPSTREAM Osi17	TF binding site mE1_TFBS_HSA
3R	16811279	3R_16811279_SNP [dm3] 3R_20985557_SNP [dm6]	T	C	2.526e^-4	0.716	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
3R	13696451	3R_13696451_SNP [dm3] 3R_17870729_SNP [dm6]	T	C	2.529e^-4	0.716	SYNONYMOUS_CODING tinc UTR_3_PRIME tinc	TF binding site mE1_TFBS_chinmo
3R	17515677	3R_17515677_SNP [dm3] 3R_21689955_SNP [dm6]	G	C	2.548e^-4	0.716	INTRON CG31176
3L	1168118	3L_1168118_SNP [dm3] 3L_1168118_SNP [dm6]	C	T	2.548e^-4	0.716	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10428386	X_10428386_SNP [dm3] X_10534353_SNP [dm6]	C	T	2.551e^-4	0.716	INTRON spri
2R	3020923	2R_3020923_SNP [dm3] 2R_7133418_SNP [dm6]	T	G	2.551e^-4	0.716	INTERGENIC
3L	21787173	3L_21787173_SNP [dm3] 3L_21794073_SNP [dm6]	C	A	2.553e^-4	0.716	INTERGENIC
3L	12020016	3L_12020016_SNP [dm3] 3L_12026916_SNP [dm6]	G	C	2.553e^-4	0.716	UPSTREAM CR43994 INTRON rols
3R	17225372	3R_17225372_SNP [dm3] 3R_21399650_SNP [dm6]	T	A	2.558e^-4	0.716	INTRON CG6475
3L	1252415	3L_1252415_SNP [dm3] 3L_1252415_SNP [dm6]	C	T	2.558e^-4	0.716	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
2R	19546229	2R_19546229_SNP [dm3] 2R_23658706_SNP [dm6]	T	C	2.558e^-4	0.716	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6305144	X_6305144_SNP [dm3] X_6411111_SNP [dm6]	C	T	2.560e^-4	0.716	INTERGENIC
2L	15888351	2L_15888351_SNP [dm3] 2L_15888351_SNP [dm6]	A	C	2.560e^-4	0.716	DOWNSTREAM Tep1 EXON CR31824
2R	5012161	2R_5012161_SNP [dm3] 2R_9124656_SNP [dm6]	C	A	2.563e^-4	0.716	INTRON CG18659
X	6837487	X_6837487_MNP [dm3] X_6943454_MNP [dm6]	AAAAG	TTTTT	2.564e^-4	0.716	INTRON CG14431
X	6837497	X_6837497_SNP [dm3] X_6943464_SNP [dm6]	G	T	2.564e^-4	0.716	INTRON CG14431
3L	12921292	3L_12921292_SNP [dm3] 3L_12928192_SNP [dm6]	T	A	2.565e^-4	0.716	INTERGENIC
3L	20042313	3L_20042313_SNP [dm3] 3L_20049213_SNP [dm6]	T	C	2.574e^-4	0.716	INTERGENIC
3L	14074538	3L_14074538_SNP [dm3] 3L_14081438_SNP [dm6]	G	T	2.576e^-4	0.716	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17904213	X_17904213_SNP [dm3] X_18010180_SNP [dm6]	C	T	2.612e^-4	0.716	INTRON Sh
3L	17049209	3L_17049209_SNP [dm3] 3L_17056109_SNP [dm6]	A	G	2.616e^-4	0.716	DOWNSTREAM rogdi INTRON CG7724
3R	25604256	3R_25604256_SNP [dm3] 3R_29778534_SNP [dm6]	T	C	2.617e^-4	0.716	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
3R	25182861	3R_25182861_SNP [dm3] 3R_29357139_SNP [dm6]	G	A	2.628e^-4	0.716	UPSTREAM CR45547 INTERGENIC
2R	19925854	2R_19925854_SNP [dm3] 2R_24038331_SNP [dm6]	T	C	2.636e^-4	0.716	SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20708159	3R_20708159_SNP [dm3] 3R_24882437_SNP [dm6]	C	T	2.637e^-4	0.716	DOWNSTREAM CG11089 INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12933129	2L_12933129_SNP [dm3] 2L_12933129_SNP [dm6]	A	G	2.638e^-4	0.716	DOWNSTREAM CR44183 INTERGENIC
3L	16739384	3L_16739384_SNP [dm3] 3L_16746284_SNP [dm6]	G	C	2.638e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	19473321	2R_19473321_SNP [dm3] 2R_23585798_SNP [dm6]	C	A	2.646e^-4	0.716	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2610310	3R_2610310_SNP [dm3] 3R_6784588_SNP [dm6]	T	A	2.652e^-4	0.716	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2R	15563747	2R_15563747_SNP [dm3] 2R_19676242_SNP [dm6]	A	G	2.653e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17248653	3L_17248653_SNP [dm3] 3L_17255553_SNP [dm6]	C	T	2.656e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19304631	3L_19304631_SNP [dm3] 3L_19311531_SNP [dm6]	C	A	2.657e^-4	0.716	INTRON pip
3R	13681654	3R_13681654_SNP [dm3] 3R_17855932_SNP [dm6]	C	T	2.664e^-4	0.716	INTRON tinc
2L	15142335	2L_15142335_SNP [dm3] 2L_15142335_SNP [dm6]	C	T	2.665e^-4	0.716	INTERGENIC
3L	7799294	3L_7799294_SNP [dm3] 3L_7806194_SNP [dm6]	A	T	2.667e^-4	0.716	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	12955165	3R_12955165_DEL [dm3] 3R_17129443_DEL [dm6]	CAC	C	2.667e^-4	0.716	UTR_3_PRIME CG17475 DOWNSTREAM CG31265	TF binding site mE1_TFBS_cad
2L	15142909	2L_15142909_SNP [dm3] 2L_15142909_SNP [dm6]	G	T	2.670e^-4	0.716	INTERGENIC
3R	10649047	3R_10649047_SNP [dm3] 3R_14823325_SNP [dm6]	C	T	2.672e^-4	0.716	INTRON btsz	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	2.675e^-4	0.716	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
3R	1640339	3R_1640339_SNP [dm3] 3R_5814617_SNP [dm6]	A	T	2.677e^-4	0.716	UPSTREAM CG42675 INTRON CG42675
X	5221450	X_5221450_SNP [dm3] X_5327417_SNP [dm6]	T	C	2.677e^-4	0.716	SYNONYMOUS_CODING CG3309 DOWNSTREAM Mcm3
2R	18005338	2R_18005338_SNP [dm3] 2R_22117833_SNP [dm6]	G	C	2.684e^-4	0.716	INTRON Vrp1
3R	6341465	3R_6341465_SNP [dm3] 3R_10515743_SNP [dm6]	C	A	2.685e^-4	0.716	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14153428	X_14153428_SNP [dm3] X_14259395_SNP [dm6]	A	T	2.693e^-4	0.716	DOWNSTREAM mud INTERGENIC
2L	2394690	2L_2394690_SNP [dm3] 2L_2394690_SNP [dm6]	T	C	2.694e^-4	0.716	INTRON VGlut
2R	6228833	2R_6228833_SNP [dm3] 2R_10341328_SNP [dm6]	G	C	2.697e^-4	0.716	INTRON CG42732
3L	5798805	3L_5798805_INS [dm3] 3L_5805705_INS [dm6]	T	TGTGAAAACC	2.706e^-4	0.716	UTR_3_PRIME CG42272 INTRON S6k
2L	10231932	2L_10231932_INS [dm3] 2L_10231932_INS [dm6]	T	TAGAAGTCAACTT...	2.710e^-4	0.716	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18480728	3R_18480728_SNP [dm3] 3R_22655006_SNP [dm6]	G	C	2.713e^-4	0.716	INTRON CG45058
2L	7900597	2L_7900597_SNP [dm3] 2L_7900597_SNP [dm6]	C	A	2.716e^-4	0.716	INTRON Snoo
2L	1451287	2L_1451287_SNP [dm3] 2L_1451287_SNP [dm6]	T	A	2.718e^-4	0.716	INTERGENIC
2R	7133731	2R_7133731_SNP [dm3] 2R_11246226_SNP [dm6]	C	A	2.722e^-4	0.716	DOWNSTREAM CG34225 EXON CR30029
3L	6149783	3L_6149783_SNP [dm3] 3L_6156683_SNP [dm6]	T	C	2.726e^-4	0.716	UTR_3_PRIME CG13297
3L	5361575	3L_5361575_SNP [dm3] 3L_5368475_SNP [dm6]	A	T	2.731e^-4	0.716	UPSTREAM CG10635 & 1 other INTERGENIC
2L	1182366	2L_1182366_SNP [dm3] 2L_1182366_SNP [dm6]	C	A	2.737e^-4	0.716	UTR_3_PRIME CG4896 & 1 other	TF binding site mE1_TFBS_cad
2R	19350488	2R_19350488_SNP [dm3] 2R_23462965_SNP [dm6]	G	C	2.742e^-4	0.716	INTRON CG43795
2R	16664008	2R_16664008_SNP [dm3] 2R_20776503_SNP [dm6]	G	C	2.745e^-4	0.716	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
3L	10496849	3L_10496849_SNP [dm3] 3L_10503749_SNP [dm6]	G	T	2.747e^-4	0.716	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15032038	2R_15032038_SNP [dm3] 2R_19144533_SNP [dm6]	T	A	2.749e^-4	0.716	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12483036	3L_12483036_SNP [dm3] 3L_12489936_SNP [dm6]	A	G	2.750e^-4	0.716	SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20857363	3L_20857363_SNP [dm3] 3L_20864263_SNP [dm6]	A	C	2.751e^-4	0.716	INTRON CG32432
3R	10617591	3R_10617591_SNP [dm3] 3R_14791869_SNP [dm6]	T	C	2.751e^-4	0.716	UTR_3_PRIME jvl INTRON jvl
X	6305143	X_6305143_SNP [dm3] X_6411110_SNP [dm6]	C	T	2.755e^-4	0.716	INTERGENIC
3R	6112736	3R_6112736_SNP [dm3] 3R_10287014_SNP [dm6]	T	A	2.760e^-4	0.716	INTRON CG43143
3L	13342811	3L_13342811_SNP [dm3] 3L_13349711_SNP [dm6]	A	T	2.761e^-4	0.716	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15320983	2L_15320983_SNP [dm3] 2L_15320983_SNP [dm6]	A	T	2.767e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1276218	3L_1276218_SNP [dm3] 3L_1276218_SNP [dm6]	G	A	2.770e^-4	0.716	UTR_5_PRIME CG32333 INTRON CG32333
3L	5361586	3L_5361586_SNP [dm3] 3L_5368486_SNP [dm6]	G	A	2.774e^-4	0.716	UPSTREAM CG10635 & 1 other INTERGENIC
3L	1255963	3L_1255963_SNP [dm3] 3L_1255963_SNP [dm6]	A	G	2.788e^-4	0.716	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
3R	12147908	3R_12147908_SNP [dm3] 3R_16322186_SNP [dm6]	A	G	2.791e^-4	0.716	UTR_3_PRIME CG44044 DOWNSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
3R	21365319	3R_21365319_SNP [dm3] 3R_25539597_SNP [dm6]	A	G	2.795e^-4	0.716	INTRON msi
3L	17248645	3L_17248645_SNP [dm3] 3L_17255545_SNP [dm6]	G	C	2.796e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4138546	2R_4138546_INS [dm3] 2R_8251041_INS [dm6]	T	TT	2.796e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	11211670	3R_11211670_SNP [dm3] 3R_15385948_SNP [dm6]	C	A	2.797e^-4	0.716	INTRON Rbp
3R	24997181	3R_24997181_SNP [dm3] 3R_29171459_SNP [dm6]	G	C	2.808e^-4	0.716	UTR_3_PRIME CG11898 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	25982568	3R_25982568_SNP [dm3] 3R_30156846_SNP [dm6]	A	G	2.811e^-4	0.716	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13652339	2R_13652339_SNP [dm3] 2R_17764834_SNP [dm6]	G	A	2.812e^-4	0.716	SYNONYMOUS_CODING OstDelta DOWNSTREAM CG5009
3L	7693385	3L_7693385_SNP [dm3] 3L_7700285_SNP [dm6]	C	T	2.818e^-4	0.716	SYNONYMOUS_CODING Ank2 INTRON CG32373
3L	5241604	3L_5241604_SNP [dm3] 3L_5248504_SNP [dm6]	C	A	2.819e^-4	0.716	UPSTREAM shep INTRON shep
2R	3020750	2R_3020750_SNP [dm3] 2R_7133245_SNP [dm6]	T	G	2.819e^-4	0.716	INTERGENIC
3L	13257149	3L_13257149_SNP [dm3] 3L_13264049_SNP [dm6]	C	T	2.823e^-4	0.716	INTRON caps	enhancer mE1_CBP_Enhancers
2L	10020702	2L_10020702_SNP [dm3] 2L_10020702_SNP [dm6]	T	A	2.823e^-4	0.716	INTERGENIC
3L	6900453	3L_6900453_SNP [dm3] 3L_6907353_SNP [dm6]	C	T	2.827e^-4	0.716	INTERGENIC
2L	5307548	2L_5307548_SNP [dm3] 2L_5307548_SNP [dm6]	C	A	2.830e^-4	0.716	INTRON vri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16139690	3L_16139690_SNP [dm3] 3L_16146590_SNP [dm6]	T	C	2.831e^-4	0.716	INTRON CG5151
2R	6289495	2R_6289495_SNP [dm3] 2R_10401990_SNP [dm6]	A	C	2.835e^-4	0.716	INTRON CG42732
3L	7312125	3L_7312125_INS [dm3] 3L_7319025_INS [dm6]	A	AG	2.835e^-4	0.716	INTERGENIC
2R	15435495	2R_15435495_SNP [dm3] 2R_19547990_SNP [dm6]	A	G	2.835e^-4	0.716	UPSTREAM sm INTRON sm
X	12663409	X_12663409_SNP [dm3] X_12769376_SNP [dm6]	G	A	2.841e^-4	0.716	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
3L	22916594	3L_22916594_SNP [dm3] 3L_22923494_SNP [dm6]	A	C	2.842e^-4	0.716	UTR_3_PRIME CG12768
3L	13899058	3L_13899058_SNP [dm3] 3L_13905958_SNP [dm6]	C	T	2.848e^-4	0.716	DOWNSTREAM Rgl INTERGENIC
X	7059587	X_7059587_SNP [dm3] X_7165554_SNP [dm6]	C	T	2.855e^-4	0.716	DOWNSTREAM CR44357 INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9905371	X_9905371_SNP [dm3] X_10011338_SNP [dm6]	T	C	2.857e^-4	0.716	SYNONYMOUS_CODING CG2990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17801943	3R_17801943_SNP [dm3] 3R_21976221_SNP [dm6]	C	G	2.860e^-4	0.716	INTRON Eip93F
X	19272582	X_19272582_SNP [dm3] X_19378549_SNP [dm6]	T	C	2.862e^-4	0.716	INTRON kek5
2R	11628286	2R_11628286_SNP [dm3] 2R_15740781_SNP [dm6]	A	G	2.862e^-4	0.716	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13279147	3L_13279147_SNP [dm3] 3L_13286047_SNP [dm6]	T	G	2.865e^-4	0.716	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2L	6152034	2L_6152034_SNP [dm3] 2L_6152034_SNP [dm6]	C	T	2.867e^-4	0.716	UTR_5_PRIME Muc26B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6706418	2L_6706418_SNP [dm3] 2L_6706418_SNP [dm6]	C	A	2.868e^-4	0.716	INTRON Tsp
3R	2045704	3R_2045704_SNP [dm3] 3R_6219982_SNP [dm6]	T	C	2.871e^-4	0.716	INTRON Osi4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10216422	3R_10216422_SNP [dm3] 3R_14390700_SNP [dm6]	A	C	2.879e^-4	0.716	DOWNSTREAM cv-c INTERGENIC
3R	6507265	3R_6507265_SNP [dm3] 3R_10681543_SNP [dm6]	C	T	2.892e^-4	0.716	UPSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10009222	3L_10009222_SNP [dm3] 3L_10016122_SNP [dm6]	T	C	2.893e^-4	0.716	INTRON dpr6
3L	17248620	3L_17248620_SNP [dm3] 3L_17255520_SNP [dm6]	G	A	2.904e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12233590	2R_12233590_SNP [dm3] 2R_16346085_SNP [dm6]	C	T	2.904e^-4	0.716	SYNONYMOUS_CODING wcd DOWNSTREAM Nup62	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17248667	3L_17248667_DEL [dm3] 3L_17255567_DEL [dm6]	TCAATACGCAT...	T	2.906e^-4	0.716	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15105650	X_15105650_DEL [dm3] X_15211617_DEL [dm6]	AA	T	2.913e^-4	0.716	DOWNSTREAM CG5662 INTERGENIC
2R	6952996	2R_6952996_SNP [dm3] 2R_11065491_SNP [dm6]	T	G	2.919e^-4	0.716	INTRON luna
3R	13845791	3R_13845791_SNP [dm3] 3R_18020069_SNP [dm6]	A	T	2.921e^-4	0.716	INTRON DNaseII	TF binding site mE1_TFBS_cad
3R	4918874	3R_4918874_SNP [dm3] 3R_9093152_SNP [dm6]	G	C	2.928e^-4	0.716	INTRON pum
3L	20087965	3L_20087965_SNP [dm3] 3L_20094865_SNP [dm6]	T	C	2.931e^-4	0.716	INTERGENIC
3R	9388119	3R_9388119_SNP [dm3] 3R_13562397_SNP [dm6]	A	T	2.932e^-4	0.716	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	13563546	2R_13563546_SNP [dm3] 2R_17676041_SNP [dm6]	C	G	2.933e^-4	0.716	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad
3L	14324885	3L_14324885_SNP [dm3] 3L_14331785_SNP [dm6]	A	T	2.934e^-4	0.716	INTRON fz
3L	16001818	3L_16001818_SNP [dm3] 3L_16008718_SNP [dm6]	C	T	2.934e^-4	0.716	SYNONYMOUS_CODING mib1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4381321	3L_4381321_SNP [dm3] 3L_4381321_SNP [dm6]	G	A	2.936e^-4	0.716	SYNONYMOUS_CODING CG32240 UPSTREAM DopEcR
3R	14705012	3R_14705012_DEL [dm3] 3R_18879290_DEL [dm6]	GGAGG	G	2.937e^-4	0.716	INTERGENIC
X	575158	X_575158_SNP [dm3] X_681125_SNP [dm6]	A	T	2.942e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
3R	16241133	3R_16241133_SNP [dm3] 3R_20415411_SNP [dm6]	G	T	2.948e^-4	0.716	INTRON Gfrl
3R	113414	3R_113414_SNP [dm3] 3R_4287692_SNP [dm6]	C	G	2.955e^-4	0.716	INTRON cpx
X	8966354	X_8966354_SNP [dm3] X_9072321_SNP [dm6]	C	T	2.957e^-4	0.716	UTR_3_PRIME CG44325 UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
2R	15927923	2R_15927923_SNP [dm3] 2R_20040418_SNP [dm6]	T	C	2.958e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19311012	3L_19311012_SNP [dm3] 3L_19317912_SNP [dm6]	C	G	2.959e^-4	0.716	INTRON pip
3L	1272931	3L_1272931_SNP [dm3] 3L_1272931_SNP [dm6]	C	T	2.970e^-4	0.716	INTRON CG9134	TF binding site mE1_TFBS_cad
3L	7126581	3L_7126581_SNP [dm3] 3L_7133481_SNP [dm6]	T	A	2.979e^-4	0.716	DOWNSTREAM Dbi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	888328	3L_888328_SNP [dm3] 3L_888328_SNP [dm6]	A	G	2.989e^-4	0.716	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	17515675	3R_17515675_SNP [dm3] 3R_21689953_SNP [dm6]	T	C	2.991e^-4	0.716	INTRON CG31176
2L	8622333	2L_8622333_SNP [dm3] 2L_8622333_SNP [dm6]	C	A	2.996e^-4	0.716	INTRON Sema-1a
3L	10901212	3L_10901212_SNP [dm3] 3L_10908112_SNP [dm6]	C	G	3.000e^-4	0.716	INTERGENIC
3L	12443448	3L_12443448_DEL [dm3] 3L_12450348_DEL [dm6]	AG	A	3.005e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12445767	3L_12445767_SNP [dm3] 3L_12452667_SNP [dm6]	C	T	3.005e^-4	0.716	INTERGENIC
3L	9064408	3L_9064408_SNP [dm3] 3L_9071308_SNP [dm6]	C	T	3.009e^-4	0.716	SYNONYMOUS_CODING CG4911	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6317450	2L_6317450_SNP [dm3] 2L_6317450_SNP [dm6]	A	G	3.012e^-4	0.716	INTRON Ddr
3L	16739385	3L_16739385_SNP [dm3] 3L_16746285_SNP [dm6]	A	T	3.018e^-4	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	12725007	2R_12725007_DEL [dm3] 2R_16837502_DEL [dm6]	CATAC	C	3.018e^-4	0.716	EXON CR43650
3L	8216719	3L_8216719_SNP [dm3] 3L_8223619_SNP [dm6]	C	A	3.018e^-4	0.716	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5111308	2L_5111308_SNP [dm3] 2L_5111308_SNP [dm6]	G	C	3.023e^-4	0.716	INTRON Msp300
2L	5111355	2L_5111355_SNP [dm3] 2L_5111355_SNP [dm6]	C	G	3.023e^-4	0.716	INTRON Msp300
3L	1357420	3L_1357420_SNP [dm3] 3L_1357420_SNP [dm6]	G	T	3.027e^-4	0.716	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
2R	17233539	2R_17233539_SNP [dm3] 2R_21346034_SNP [dm6]	T	A	3.027e^-4	0.716	DOWNSTREAM CG15666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10231111	3R_10231111_SNP [dm3] 3R_14405389_SNP [dm6]	C	T	3.035e^-4	0.716	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_inv
2L	5113252	2L_5113252_SNP [dm3] 2L_5113252_SNP [dm6]	G	A	3.037e^-4	0.716	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19418157	2L_19418157_SNP [dm3] 2L_19418157_SNP [dm6]	G	T	3.041e^-4	0.716	UTR_3_PRIME Lectin-galC1 UPSTREAM lectin-37Da & 1 other INTRON Pax
3R	27208150	3R_27208150_SNP [dm3] 3R_31382428_SNP [dm6]	C	T	3.046e^-4	0.716	INTRON CG1607
3R	27208190	3R_27208190_SNP [dm3] 3R_31382468_SNP [dm6]	G	A	3.046e^-4	0.716	INTRON CG1607
3R	10921607	3R_10921607_DEL [dm3] 3R_15095885_DEL [dm6]	CAACCAGCAAC...	C	3.049e^-4	0.716	UPSTREAM CG6966 DOWNSTREAM CG42788 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	14881081	X_14881081_INS [dm3] X_14987048_INS [dm6]	A	AA	3.053e^-4	0.716	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	6650214	3R_6650214_SNP [dm3] 3R_10824492_SNP [dm6]	T	C	3.054e^-4	0.716	INTERGENIC
3R	2056989	3R_2056989_SNP [dm3] 3R_6231267_SNP [dm6]	T	C	3.055e^-4	0.716	INTERGENIC
3R	23126152	3R_23126152_SNP [dm3] 3R_27300430_SNP [dm6]	A	T	3.056e^-4	0.716	INTRON CG3339
X	9796240	X_9796240_SNP [dm3] X_9902207_SNP [dm6]	A	C	3.056e^-4	0.716	INTERGENIC
3L	10636827	3L_10636827_SNP [dm3] 3L_10643727_SNP [dm6]	G	A	3.057e^-4	0.716	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
3R	1301883	3R_1301883_SNP [dm3] 3R_5476161_SNP [dm6]	T	G	3.060e^-4	0.716	INTRON Hcs
3L	18730150	3L_18730150_SNP [dm3] 3L_18737050_SNP [dm6]	C	G	3.063e^-4	0.716	INTERGENIC
3L	18730151	3L_18730151_DEL [dm3] 3L_18737051_DEL [dm6]	TACCAT	T	3.063e^-4	0.716	INTERGENIC
2L	3415970	2L_3415970_SNP [dm3] 2L_3415970_SNP [dm6]	C	G	3.064e^-4	0.716	UPSTREAM CG31952 INTRON pgant2
2L	8771328	2L_8771328_SNP [dm3] 2L_8771328_SNP [dm6]	A	C	3.071e^-4	0.716	SYNONYMOUS_CODING CG9465
3L	9566147	3L_9566147_SNP [dm3] 3L_9573047_SNP [dm6]	T	G	3.073e^-4	0.716	INTRON CG42673
3R	7420814	3R_7420814_SNP [dm3] 3R_11595092_SNP [dm6]	A	C	3.075e^-4	0.716	INTRON Jupiter
3R	5025377	3R_5025377_SNP [dm3] 3R_9199655_SNP [dm6]	A	G	3.088e^-4	0.717	INTRON pum
3L	888481	3L_888481_SNP [dm3] 3L_888481_SNP [dm6]	G	A	3.090e^-4	0.717	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	11403100	3L_11403100_SNP [dm3] 3L_11410000_SNP [dm6]	C	A	3.094e^-4	0.717	INTERGENIC
2R	3893434	2R_3893434_SNP [dm3] 2R_8005929_SNP [dm6]	G	A	3.094e^-4	0.717	SPLICE_SITE_REGION Odc1 INTRON Odc1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24294128	3R_24294128_DEL [dm3] 3R_28468406_DEL [dm6]	AGGGCTAATTTTCTA...	A	3.099e^-4	0.718	INTRON beat-VI
3L	21399503	3L_21399503_SNP [dm3] 3L_21406403_SNP [dm6]	C	T	3.114e^-4	0.718	SYNONYMOUS_CODING sa INTRON rgn
3R	27473828	3R_27473828_SNP [dm3] 3R_31648106_SNP [dm6]	G	C	3.114e^-4	0.718	INTRON kek6
2L	13991532	2L_13991532_SNP [dm3] 2L_13991532_SNP [dm6]	G	A	3.119e^-4	0.718	INTRON rk
3L	10901159	3L_10901159_SNP [dm3] 3L_10908059_SNP [dm6]	G	A	3.125e^-4	0.718	INTERGENIC
3R	6660063	3R_6660063_SNP [dm3] 3R_10834341_SNP [dm6]	T	G	3.131e^-4	0.718	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	604271	X_604271_SNP [dm3] X_710238_SNP [dm6]	C	G	3.134e^-4	0.718	INTRON sdk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5361590	3L_5361590_SNP [dm3] 3L_5368490_SNP [dm6]	T	G	3.139e^-4	0.718	UPSTREAM CG10635 & 1 other INTERGENIC
3R	23299799	3R_23299799_SNP [dm3] 3R_27474077_SNP [dm6]	A	T	3.150e^-4	0.718	INTERGENIC
3R	3836899	3R_3836899_SNP [dm3] 3R_8011177_SNP [dm6]	T	C	3.151e^-4	0.718	NON_SYNONYMOUS_CODING CG10435 DOWNSTREAM CG3223
3L	10260194	3L_10260194_SNP [dm3] 3L_10267094_SNP [dm6]	C	T	3.156e^-4	0.718	UTR_5_PRIME can	regulatory region REDfly_CRMs
3R	21228403	3R_21228403_SNP [dm3] 3R_25402681_SNP [dm6]	A	G	3.156e^-4	0.718	INTRON Fur1
2L	18213809	2L_18213809_SNP [dm3] 2L_18213809_SNP [dm6]	T	A	3.164e^-4	0.718	INTRON CG42750	insulator Insulator_Class_II.mE01
3R	13707878	3R_13707878_SNP [dm3] 3R_17882156_SNP [dm6]	G	A	3.165e^-4	0.718	SYNONYMOUS_CODING Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10607762	3R_10607762_SNP [dm3] 3R_14782040_SNP [dm6]	G	A	3.171e^-4	0.718	INTRON jvl
3L	8079666	3L_8079666_SNP [dm3] 3L_8086566_SNP [dm6]	G	C	3.174e^-4	0.718	INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	22971908	3L_22971908_SNP [dm3] 3L_22978808_SNP [dm6]	A	G	3.179e^-4	0.718	INTERGENIC
2L	7900729	2L_7900729_SNP [dm3] 2L_7900729_SNP [dm6]	T	C	3.180e^-4	0.718	INTRON Snoo
3R	23030971	3R_23030971_SNP [dm3] 3R_27205249_SNP [dm6]	A	C	3.194e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs
2L	6152028	2L_6152028_SNP [dm3] 2L_6152028_SNP [dm6]	G	A	3.203e^-4	0.718	UTR_5_PRIME Muc26B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12269923	X_12269923_SNP [dm3] X_12375890_SNP [dm6]	G	A	3.203e^-4	0.718	SYNONYMOUS_CODING Ir11a
X	13066223	X_13066223_SNP [dm3] X_13172190_SNP [dm6]	C	T	3.208e^-4	0.718	INTRON CG34411	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13066265	X_13066265_SNP [dm3] X_13172232_SNP [dm6]	A	G	3.208e^-4	0.718	INTRON CG34411	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3020977	2R_3020977_SNP [dm3] 2R_7133472_SNP [dm6]	G	A	3.210e^-4	0.718	INTERGENIC
2R	9662081	2R_9662081_SNP [dm3] 2R_13774576_SNP [dm6]	T	A	3.217e^-4	0.718	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5137670	3L_5137670_SNP [dm3] 3L_5144570_SNP [dm6]	G	A	3.217e^-4	0.718	SYNONYMOUS_CODING CG10671 DOWNSTREAM CG4623	TF binding site mE1_TFBS_chinmo
2L	7594738	2L_7594738_DEL [dm3] 2L_7594738_DEL [dm6]	TT	T	3.218e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19690579	3R_19690579_SNP [dm3] 3R_23864857_SNP [dm6]	A	G	3.222e^-4	0.718	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18932774	2R_18932774_SNP [dm3] 2R_23045251_SNP [dm6]	C	G	3.223e^-4	0.718	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	1342218	3L_1342218_SNP [dm3] 3L_1342218_SNP [dm6]	C	T	3.230e^-4	0.718	UTR_5_PRIME CG2199 UPSTREAM CG2199 DOWNSTREAM Ptp61F INTRON CG2199	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	9982033	3L_9982033_SNP [dm3] 3L_9988933_SNP [dm6]	T	G	3.238e^-4	0.718	INTRON dpr6
3L	16471417	3L_16471417_SNP [dm3] 3L_16478317_SNP [dm6]	A	G	3.241e^-4	0.718	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA
3L	14051707	3L_14051707_SNP [dm3] 3L_14058607_SNP [dm6]	A	G	3.242e^-4	0.718	INTRON CG32138
2R	16522454	2R_16522454_SNP [dm3] 2R_20634949_SNP [dm6]	G	A	3.246e^-4	0.718	SPLICE_SITE_REGION rig INTRON rig	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19895183	2R_19895183_SNP [dm3] 2R_24007660_SNP [dm6]	G	A	3.248e^-4	0.718	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
3L	4380809	3L_4380809_SNP [dm3] 3L_4380809_SNP [dm6]	A	G	3.254e^-4	0.718	UPSTREAM DopEcR DOWNSTREAM CG32240 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1255970	3L_1255970_DEL [dm3] 3L_1255970_DEL [dm6]	AG	A	3.259e^-4	0.718	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
3R	26879766	3R_26879766_SNP [dm3] 3R_31054044_SNP [dm6]	T	A	3.265e^-4	0.718	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	8501628	2L_8501628_SNP [dm3] 2L_8501628_SNP [dm6]	A	T	3.272e^-4	0.718	INTRON Dh31	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5304923	3L_5304923_SNP [dm3] 3L_5311823_SNP [dm6]	T	A	3.277e^-4	0.718	INTERGENIC
3L	1281918	3L_1281918_SNP [dm3] 3L_1281918_SNP [dm6]	C	T	3.278e^-4	0.718	INTRON CG32333
2R	17897298	2R_17897298_SNP [dm3] 2R_22009793_SNP [dm6]	C	T	3.284e^-4	0.718	INTRON CG34370
3R	13672622	3R_13672622_INS [dm3] 3R_17846900_INS [dm6]	T	TT	3.286e^-4	0.718	INTRON tinc
3L	17170871	3L_17170871_SNP [dm3] 3L_17177771_SNP [dm6]	A	G	3.291e^-4	0.718	INTRON Rbp6
3R	22926182	3R_22926182_SNP [dm3] 3R_27100460_SNP [dm6]	T	C	3.292e^-4	0.718	UPSTREAM eater & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	19857924	2L_19857924_SNP [dm3] 2L_19857924_SNP [dm6]	G	A	3.310e^-4	0.718	INTRON sick	TF binding site mE1_TFBS_inv
3R	14201695	3R_14201695_SNP [dm3] 3R_18375973_SNP [dm6]	A	G	3.315e^-4	0.718	EXON CR44946
3L	4373616	3L_4373616_SNP [dm3] 3L_4373616_SNP [dm6]	C	A	3.326e^-4	0.718	INTRON DopEcR
2L	8622126	2L_8622126_DEL [dm3] 2L_8622126_DEL [dm6]	GACTTCA	G	3.337e^-4	0.718	INTRON Sema-1a
2L	12933122	2L_12933122_SNP [dm3] 2L_12933122_SNP [dm6]	C	A	3.341e^-4	0.718	DOWNSTREAM CR44183 INTERGENIC
2L	7475641	2L_7475641_SNP [dm3] 2L_7475641_SNP [dm6]	C	T	3.343e^-4	0.718	SYNONYMOUS_CODING CG6441 INTRON Ziz
2L	5117796	2L_5117796_SNP [dm3] 2L_5117796_SNP [dm6]	G	C	3.347e^-4	0.718	INTRON Msp300
X	13430095	X_13430095_SNP [dm3] X_13536062_SNP [dm6]	A	G	3.359e^-4	0.718	UTR_3_PRIME CG15756
2L	3970498	2L_3970498_SNP [dm3] 2L_3970498_SNP [dm6]	T	A	3.368e^-4	0.718	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	23029909	3R_23029909_SNP [dm3] 3R_27204187_SNP [dm6]	G	A	3.370e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	19231849	2R_19231849_SNP [dm3] 2R_23344326_SNP [dm6]	G	A	3.373e^-4	0.718	SYNONYMOUS_CODING CG3502	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22926254	3R_22926254_SNP [dm3] 3R_27100532_SNP [dm6]	G	T	3.376e^-4	0.718	UPSTREAM eater & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	12222559	3L_12222559_SNP [dm3] 3L_12229459_SNP [dm6]	G	A	3.381e^-4	0.718	INTRON app
2R	19468667	2R_19468667_SNP [dm3] 2R_23581144_SNP [dm6]	C	T	3.381e^-4	0.718	UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25787399	3R_25787399_SNP [dm3] 3R_29961677_SNP [dm6]	A	G	3.383e^-4	0.718	INTRON TkR99D
2R	18456085	2R_18456085_SNP [dm3] 2R_22568580_SNP [dm6]	A	T	3.390e^-4	0.718	INTRON dnr1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5864073	X_5864073_SNP [dm3] X_5970040_SNP [dm6]	A	T	3.390e^-4	0.718	INTRON Grip	TF binding site BDTNP1_TFBS_da
2R	4698344	2R_4698344_SNP [dm3] 2R_8810839_SNP [dm6]	G	A	3.393e^-4	0.718	INTRON sns	TF binding site mE1_TFBS_inv
2L	3153832	2L_3153832_SNP [dm3] 2L_3153832_SNP [dm6]	T	A	3.393e^-4	0.718	INTRON Mad
2L	18767271	2L_18767271_SNP [dm3] 2L_18767271_SNP [dm6]	C	T	3.395e^-4	0.718	INTRON ham
2L	5111253	2L_5111253_SNP [dm3] 2L_5111253_SNP [dm6]	T	A	3.396e^-4	0.718	INTRON Msp300
2L	18811544	2L_18811544_SNP [dm3] 2L_18811544_SNP [dm6]	A	G	3.406e^-4	0.718	UPSTREAM CG10570 & 1 other INTERGENIC
3R	13681811	3R_13681811_SNP [dm3] 3R_17856089_SNP [dm6]	G	A	3.410e^-4	0.718	INTRON tinc
2R	19949282	2R_19949282_SNP [dm3] 2R_24061759_SNP [dm6]	C	T	3.413e^-4	0.718	UTR_3_PRIME RpL12 DOWNSTREAM RpL39 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	1914676	3L_1914676_SNP [dm3] 3L_1914676_SNP [dm6]	C	T	3.413e^-4	0.718	INTERGENIC
3L	21587120	3L_21587120_SNP [dm3] 3L_21594020_SNP [dm6]	A	C	3.415e^-4	0.718	UPSTREAM CR43940 INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23130932	3R_23130932_SNP [dm3] 3R_27305210_SNP [dm6]	G	C	3.427e^-4	0.718	INTRON CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8872825	3L_8872825_SNP [dm3] 3L_8879725_SNP [dm6]	A	G	3.429e^-4	0.718	INTRON dally
2L	13822996	2L_13822996_SNP [dm3] 2L_13822996_SNP [dm6]	T	C	3.430e^-4	0.718	SYNONYMOUS_CODING b DOWNSTREAM tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14981554	2L_14981554_SNP [dm3] 2L_14981554_SNP [dm6]	C	T	3.431e^-4	0.718	INTRON mol
2L	6729159	2L_6729159_SNP [dm3] 2L_6729159_SNP [dm6]	C	T	3.434e^-4	0.718	SYNONYMOUS_CODING Liprin-alpha	TF binding site mE1_TFBS_chinmo
3R	14064913	3R_14064913_SNP [dm3] 3R_18239191_SNP [dm6]	A	C	3.435e^-4	0.718	UTR_3_PRIME repo DOWNSTREAM CG7156
3L	1072985	3L_1072985_INS [dm3] 3L_1072985_INS [dm6]	A	ATA	3.439e^-4	0.718	INTRON bab1
X	15428839	X_15428839_SNP [dm3] X_15534806_SNP [dm6]	T	G	3.441e^-4	0.718	INTRON Ac13E
2L	5212110	2L_5212110_SNP [dm3] 2L_5212110_SNP [dm6]	T	C	3.443e^-4	0.718	SYNONYMOUS_CODING Cyp28d1 DOWNSTREAM CG7742
3R	7344229	3R_7344229_SNP [dm3] 3R_11518507_SNP [dm6]	G	A	3.445e^-4	0.718	INTERGENIC
3L	15773753	3L_15773753_SNP [dm3] 3L_15780653_SNP [dm6]	C	T	3.448e^-4	0.718	INTERGENIC
2L	6729562	2L_6729562_SNP [dm3] 2L_6729562_SNP [dm6]	T	C	3.456e^-4	0.718	SPLICE_SITE_REGION Liprin-alpha INTRON Liprin-alpha
3R	11008536	3R_11008536_SNP [dm3] 3R_15182814_SNP [dm6]	T	A	3.458e^-4	0.718	INTRON Gyc88E
2R	4551032	2R_4551032_SNP [dm3] 2R_8663527_SNP [dm6]	T	C	3.464e^-4	0.718	INTRON ptc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1152379	3L_1152379_SNP [dm3] 3L_1152379_SNP [dm6]	G	A	3.470e^-4	0.718	INTRON bab2
2R	10323801	2R_10323801_SNP [dm3] 2R_14436296_SNP [dm6]	C	G	3.472e^-4	0.718	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	26887542	3R_26887542_SNP [dm3] 3R_31061820_SNP [dm6]	G	C	3.482e^-4	0.718	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19949592	2R_19949592_SNP [dm3] 2R_24062069_SNP [dm6]	A	G	3.483e^-4	0.718	UPSTREAM Rap2l DOWNSTREAM RpL12 INTRON RpL39	TF binding site BDTNP1_TFBS_dl
2R	19949595	2R_19949595_INS [dm3] 2R_24062072_INS [dm6]	A	AACAACTAGATGAG...	3.483e^-4	0.718	UPSTREAM Rap2l DOWNSTREAM RpL12 INTRON RpL39	TF binding site BDTNP1_TFBS_dl
3R	13707801	3R_13707801_SNP [dm3] 3R_17882079_SNP [dm6]	C	A	3.490e^-4	0.718	INTRON Rim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19272719	2L_19272719_INS [dm3] 2L_19272719_INS [dm6]	A	ACATTGCCAGA...	3.492e^-4	0.718	INTRON CR44190
3R	9171560	3R_9171560_SNP [dm3] 3R_13345838_SNP [dm6]	C	A	3.493e^-4	0.718	DOWNSTREAM PK2-R1 INTERGENIC
2L	11336673	2L_11336673_SNP [dm3] 2L_11336673_SNP [dm6]	A	C	3.499e^-4	0.718	INTERGENIC
2R	19894859	2R_19894859_SNP [dm3] 2R_24007336_SNP [dm6]	A	G	3.501e^-4	0.718	SYNONYMOUS_CODING Unc-89
3R	9530149	3R_9530149_SNP [dm3] 3R_13704427_SNP [dm6]	C	T	3.501e^-4	0.718	SYNONYMOUS_CODING Adgf-D
X	10195895	X_10195895_SNP [dm3] X_10301862_SNP [dm6]	T	G	3.502e^-4	0.718	INTRON alpha-Man-I
3L	1997837	3L_1997837_SNP [dm3] 3L_1997837_SNP [dm6]	A	G	3.503e^-4	0.718	INTERGENIC
2L	5108826	2L_5108826_SNP [dm3] 2L_5108826_SNP [dm6]	G	T	3.510e^-4	0.718	UTR_5_PRIME Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3325189	X_3325189_SNP [dm3] X_3431156_SNP [dm6]	G	T	3.511e^-4	0.718	INTRON CR44999 & 1 other
2L	5987461	2L_5987461_SNP [dm3] 2L_5987461_SNP [dm6]	C	T	3.513e^-4	0.718	UTR_5_PRIME ifc INTRON ifc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20214295	3L_20214295_SNP [dm3] 3L_20221195_SNP [dm6]	T	A	3.521e^-4	0.718	UPSTREAM CG6933 & 1 other INTERGENIC
3R	24351071	3R_24351071_DEL [dm3] 3R_28525349_DEL [dm6]	GG	G	3.523e^-4	0.718	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8966414	X_8966414_SNP [dm3] X_9072381_SNP [dm6]	A	T	3.525e^-4	0.718	UTR_3_PRIME CG44325 UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
2R	19014326	2R_19014326_SNP [dm3] 2R_23126803_SNP [dm6]	C	T	3.525e^-4	0.718	UPSTREAM Klp59C DOWNSTREAM CR44455 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19014330	2R_19014330_SNP [dm3] 2R_23126807_SNP [dm6]	C	A	3.525e^-4	0.718	UPSTREAM Klp59C DOWNSTREAM CR44455 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12942542	3R_12942542_SNP [dm3] 3R_17116820_SNP [dm6]	T	C	3.526e^-4	0.718	INTRON cher	TF binding site mE1_TFBS_sens
3R	16440460	3R_16440460_SNP [dm3] 3R_20614738_SNP [dm6]	G	A	3.537e^-4	0.718	INTRON CG15923	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10330051	X_10330051_SNP [dm3] X_10436018_SNP [dm6]	A	G	3.540e^-4	0.718	INTRON CG32683
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	3.558e^-4	0.718	UPSTREAM Or85c INTERGENIC
2L	7183674	2L_7183674_SNP [dm3] 2L_7183674_SNP [dm6]	A	G	3.574e^-4	0.718	INTRON CG4495	TF binding site BDTNP1_TFBS_twi
3L	21796232	3L_21796232_SNP [dm3] 3L_21803132_SNP [dm6]	T	A	3.578e^-4	0.718	INTERGENIC
3R	4677447	3R_4677447_SNP [dm3] 3R_8851725_SNP [dm6]	A	C	3.580e^-4	0.718	INTRON pyd
2L	15474695	2L_15474695_SNP [dm3] 2L_15474695_SNP [dm6]	A	C	3.582e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4373618	3L_4373618_SNP [dm3] 3L_4373618_SNP [dm6]	A	C	3.582e^-4	0.718	INTRON DopEcR
3R	12834151	3R_12834151_SNP [dm3] 3R_17008429_SNP [dm6]	T	G	3.586e^-4	0.718	UPSTREAM CG8907 INTRON CG8907
3R	25528950	3R_25528950_SNP [dm3] 3R_29703228_SNP [dm6]	G	A	3.591e^-4	0.718	INTERGENIC
2L	5812140	2L_5812140_SNP [dm3] 2L_5812140_SNP [dm6]	T	A	3.591e^-4	0.718	DOWNSTREAM CG43307 INTERGENIC
3R	9940128	3R_9940128_SNP [dm3] 3R_14114406_SNP [dm6]	G	A	3.596e^-4	0.718	SYNONYMOUS_CODING Kif19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6660783	3R_6660783_SNP [dm3] 3R_10835061_SNP [dm6]	C	A	3.596e^-4	0.718	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17924866	3R_17924866_SNP [dm3] 3R_22099144_SNP [dm6]	C	A	3.597e^-4	0.718	INTRON CG5778
3L	8779650	3L_8779650_SNP [dm3] 3L_8786550_SNP [dm6]	T	C	3.598e^-4	0.718	INTRON Fhos
3L	22023137	3L_22023137_SNP [dm3] 3L_22030037_SNP [dm6]	A	G	3.603e^-4	0.718	UPSTREAM CG43392 EXON CR44687
3R	1270114	3R_1270114_SNP [dm3] 3R_5444392_SNP [dm6]	A	G	3.613e^-4	0.718	INTRON CG14669
2L	5297002	2L_5297002_SNP [dm3] 2L_5297002_SNP [dm6]	G	A	3.614e^-4	0.718	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1440799	3L_1440799_SNP [dm3] 3L_1440799_SNP [dm6]	T	C	3.617e^-4	0.718	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	21243740	3R_21243740_SNP [dm3] 3R_25418018_SNP [dm6]	A	G	3.625e^-4	0.718	INTRON Fur1
2R	16344466	2R_16344466_SNP [dm3] 2R_20456961_SNP [dm6]	T	G	3.630e^-4	0.718	INTRON CG12484	TF binding site mE1_TFBS_inv
3R	27208094	3R_27208094_SNP [dm3] 3R_31382372_SNP [dm6]	C	T	3.633e^-4	0.718	INTRON CG1607
X	9796241	X_9796241_SNP [dm3] X_9902208_SNP [dm6]	A	T	3.643e^-4	0.718	INTERGENIC
3R	14064770	3R_14064770_SNP [dm3] 3R_18239048_SNP [dm6]	T	C	3.650e^-4	0.718	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
3L	19306759	3L_19306759_SNP [dm3] 3L_19313659_SNP [dm6]	T	C	3.651e^-4	0.718	INTRON pip
2L	4941981	2L_4941981_SNP [dm3] 2L_4941981_SNP [dm6]	G	C	3.654e^-4	0.718	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
3R	8099406	3R_8099406_SNP [dm3] 3R_12273684_SNP [dm6]	C	G	3.662e^-4	0.718	DOWNSTREAM Sfp87B INTRON svp
3R	17998927	3R_17998927_SNP [dm3] 3R_22173205_SNP [dm6]	C	T	3.664e^-4	0.718	INTRON SKIP
X	11179634	X_11179634_MNP [dm3] X_11285601_MNP [dm6]	ATG	CGC	3.665e^-4	0.718	INTRON CG44422
X	15428778	X_15428778_DEL [dm3] X_15534745_DEL [dm6]	AT	A	3.665e^-4	0.718	INTRON Ac13E
3L	19316401	3L_19316401_DEL [dm3] 3L_19323301_DEL [dm6]	GA	G	3.666e^-4	0.718	INTRON pip	TF binding site mE1_TFBS_HSA
2R	3214560	2R_3214560_SNP [dm3] 2R_7327055_SNP [dm6]	T	G	3.669e^-4	0.718	INTRON CR45129 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15635096	2L_15635096_SNP [dm3] 2L_15635096_SNP [dm6]	A	G	3.674e^-4	0.718	DOWNSTREAM CG18480 INTERGENIC
3R	17515619	3R_17515619_SNP [dm3] 3R_21689897_SNP [dm6]	T	C	3.674e^-4	0.718	INTRON CG31176
2R	19947901	2R_19947901_SNP [dm3] 2R_24060378_SNP [dm6]	T	C	3.680e^-4	0.718	UTR_5_PRIME RpL12 UPSTREAM RpL12 & 1 other DOWNSTREAM eIF-5A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6151965	3L_6151965_SNP [dm3] 3L_6158865_SNP [dm6]	G	T	3.685e^-4	0.718	UPSTREAM Cpr65Ay INTERGENIC
3R	21228369	3R_21228369_SNP [dm3] 3R_25402647_SNP [dm6]	A	T	3.701e^-4	0.718	INTRON Fur1
3R	19571032	3R_19571032_SNP [dm3] 3R_23745310_SNP [dm6]	A	T	3.706e^-4	0.718	INTRON Hmgcr
3L	2309249	3L_2309249_SNP [dm3] 3L_2309249_SNP [dm6]	G	A	3.707e^-4	0.718	INTERGENIC
3L	5361221	3L_5361221_DEL [dm3] 3L_5368121_DEL [dm6]	CAATTTATT	C	3.713e^-4	0.718	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
3L	14245277	3L_14245277_SNP [dm3] 3L_14252177_SNP [dm6]	G	C	3.715e^-4	0.718	INTERGENIC
2R	14081120	2R_14081120_SNP [dm3] 2R_18193615_SNP [dm6]	C	G	3.721e^-4	0.718	UPSTREAM CG33958 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19646580	2R_19646580_SNP [dm3] 2R_23759057_SNP [dm6]	A	G	3.723e^-4	0.718	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16139760	3L_16139760_SNP [dm3] 3L_16146660_SNP [dm6]	T	C	3.732e^-4	0.718	INTRON CG5151
2L	1451315	2L_1451315_SNP [dm3] 2L_1451315_SNP [dm6]	T	A	3.734e^-4	0.718	INTERGENIC
2R	7277184	2R_7277184_INS [dm3] 2R_11389679_INS [dm6]	A	AA	3.736e^-4	0.718	UPSTREAM CG30022 INTRON sprt
2L	14780597	2L_14780597_SNP [dm3] 2L_14780597_SNP [dm6]	G	C	3.741e^-4	0.718	INTERGENIC
X	6741301	X_6741301_SNP [dm3] X_6847268_SNP [dm6]	G	A	3.741e^-4	0.718	SYNONYMOUS_CODING CG4557 DOWNSTREAM Cht11
2R	11004262	2R_11004262_SNP [dm3] 2R_15116757_SNP [dm6]	C	A	3.745e^-4	0.718	INTRON chn	TF binding site BDTNP1_TFBS_dl
3R	6659518	3R_6659518_SNP [dm3] 3R_10833796_SNP [dm6]	A	C	3.745e^-4	0.718	INTRON Cad86C
3R	21381704	3R_21381704_SNP [dm3] 3R_25555982_SNP [dm6]	G	T	3.747e^-4	0.718	INTRON msi
3R	9534897	3R_9534897_SNP [dm3] 3R_13709175_SNP [dm6]	T	A	3.747e^-4	0.718	UTR_3_PRIME CG31469 DOWNSTREAM primo-2 & 2 others
X	15896483	X_15896483_SNP [dm3] X_16002450_SNP [dm6]	C	T	3.749e^-4	0.718	SYNONYMOUS_CODING vap	TF binding site mE1_TFBS_sens
3R	13785002	3R_13785002_SNP [dm3] 3R_17959280_SNP [dm6]	C	A	3.750e^-4	0.718	INTRON cpo
2L	10870411	2L_10870411_SNP [dm3] 2L_10870411_SNP [dm6]	C	T	3.753e^-4	0.718	SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
X	19272585	X_19272585_INS [dm3] X_19378552_INS [dm6]	A	AA	3.754e^-4	0.718	INTRON kek5
3L	1997916	3L_1997916_SNP [dm3] 3L_1997916_SNP [dm6]	G	T	3.755e^-4	0.718	INTERGENIC
3L	14051127	3L_14051127_INS [dm3] 3L_14058027_INS [dm6]	T	TAGT	3.760e^-4	0.718	INTRON CG32138
2R	12439285	2R_12439285_INS [dm3] 2R_16551780_INS [dm6]	C	CC	3.760e^-4	0.718	UPSTREAM Syn2 INTERGENIC
2L	4938201	2L_4938201_SNP [dm3] 2L_4938201_SNP [dm6]	A	T	3.765e^-4	0.718	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6848618	3R_6848618_SNP [dm3] 3R_11022896_SNP [dm6]	T	A	3.772e^-4	0.718	INTRON CG34114	TF binding site mE1_TFBS_ttk
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	3.784e^-4	0.718	INTERGENIC
3L	13279150	3L_13279150_DEL [dm3] 3L_13286050_DEL [dm6]	TT	T	3.788e^-4	0.718	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
3L	7702539	3L_7702539_SNP [dm3] 3L_7709439_SNP [dm6]	C	T	3.793e^-4	0.718	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6955186	2R_6955186_SNP [dm3] 2R_11067681_SNP [dm6]	G	A	3.793e^-4	0.718	INTRON luna
2L	7161352	2L_7161352_SNP [dm3] 2L_7161352_SNP [dm6]	G	T	3.802e^-4	0.718	INTERGENIC
3R	22925334	3R_22925334_SNP [dm3] 3R_27099612_SNP [dm6]	A	T	3.802e^-4	0.718	NON_SYNONYMOUS_CODING eater
3L	5254988	3L_5254988_SNP [dm3] 3L_5261888_SNP [dm6]	A	G	3.805e^-4	0.718	INTRON shep
3R	13681722	3R_13681722_DEL [dm3] 3R_17856000_DEL [dm6]	CG	C	3.812e^-4	0.718	INTRON tinc
3R	22284512	3R_22284512_SNP [dm3] 3R_26458790_SNP [dm6]	G	A	3.815e^-4	0.718	INTRON CG14238
3L	8656064	3L_8656064_INS [dm3] 3L_8662964_INS [dm6]	T	TG	3.823e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3153794	2L_3153794_SNP [dm3] 2L_3153794_SNP [dm6]	G	A	3.832e^-4	0.718	INTRON Mad
3L	16470884	3L_16470884_SNP [dm3] 3L_16477784_SNP [dm6]	T	C	3.843e^-4	0.718	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10949474	3R_10949474_SNP [dm3] 3R_15123752_SNP [dm6]	A	G	3.844e^-4	0.718	INTRON CG42788
3L	3745463	3L_3745463_SNP [dm3] 3L_3745463_SNP [dm6]	T	A	3.844e^-4	0.718	INTRON CG32264
3R	6654468	3R_6654468_SNP [dm3] 3R_10828746_SNP [dm6]	A	C	3.845e^-4	0.718	INTRON Cad86C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8710449	3L_8710449_SNP [dm3] 3L_8717349_SNP [dm6]	C	T	3.848e^-4	0.718	INTERGENIC
3L	4155431	3L_4155431_SNP [dm3] 3L_4155431_SNP [dm6]	G	A	3.855e^-4	0.718	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14030915	3R_14030915_SNP [dm3] 3R_18205193_SNP [dm6]	T	C	3.857e^-4	0.718	INTRON CG7985
2R	13910834	2R_13910834_SNP [dm3] 2R_18023329_SNP [dm6]	T	G	3.859e^-4	0.718	DOWNSTREAM CG10910 INTERGENIC
3R	22926320	3R_22926320_SNP [dm3] 3R_27100598_SNP [dm6]	C	A	3.867e^-4	0.718	UPSTREAM eater & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	9388032	3R_9388032_SNP [dm3] 3R_13562310_SNP [dm6]	A	T	3.872e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	14881221	2R_14881221_SNP [dm3] 2R_18993716_SNP [dm6]	T	C	3.883e^-4	0.718	UPSTREAM snoRNA:abba-a INTRON tn
3R	9879359	3R_9879359_SNP [dm3] 3R_14053637_SNP [dm6]	A	T	3.885e^-4	0.718	INTERGENIC

By genomic position
Variant impact
Gene name

sd_MortalityInd phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results