DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.024e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02547

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.5097	0.0234

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1885 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	20706594	3R_20706594_SNP [dm3] 3R_24880872_SNP [dm6]	C	T	9.746e^-7	0.969	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
3R	17970244	3R_17970244_SNP [dm3] 3R_22144522_SNP [dm6]	G	A	1.259e^-6	0.969	INTRON SKIP
3L	22925422	3L_22925422_SNP [dm3] 3L_22932322_SNP [dm6]	G	T	2.291e^-6	0.969	INTERGENIC
2L	11431434	2L_11431434_SNP [dm3] 2L_11431434_SNP [dm6]	C	T	2.921e^-6	0.969	INTERGENIC
3R	11303457	3R_11303457_SNP [dm3] 3R_15477735_SNP [dm6]	A	T	3.911e^-6	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20706588	3R_20706588_SNP [dm3] 3R_24880866_SNP [dm6]	G	A	4.662e^-6	0.969	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
2R	5829099	2R_5829099_SNP [dm3] 2R_9941594_SNP [dm6]	C	T	5.048e^-6	0.969	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	5829077	2R_5829077_INS [dm3] 2R_9941572_INS [dm6]	A	AGA	5.835e^-6	0.969	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	12309107	3L_12309107_SNP [dm3] 3L_12316007_SNP [dm6]	A	C	5.958e^-6	0.969	INTERGENIC
3R	12105207	3R_12105207_SNP [dm3] 3R_16279485_SNP [dm6]	G	A	6.335e^-6	0.969	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_Trl
3R	17970232	3R_17970232_SNP [dm3] 3R_22144510_SNP [dm6]	A	T	6.834e^-6	0.969	INTRON SKIP
2R	15488863	2R_15488863_SNP [dm3] 2R_19601358_SNP [dm6]	A	T	8.160e^-6	0.969	INTRON sm
3R	18085901	3R_18085901_SNP [dm3] 3R_22260179_SNP [dm6]	T	C	8.843e^-6	0.969	INTRON SKIP
3L	18201532	3L_18201532_SNP [dm3] 3L_18208432_SNP [dm6]	C	A	9.252e^-6	0.969	INTERGENIC
3R	20706601	3R_20706601_SNP [dm3] 3R_24880879_SNP [dm6]	T	C	1.043e^-5	0.969	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
X	17961371	X_17961371_SNP [dm3] X_18067338_SNP [dm6]	A	T	1.127e^-5	0.969	SPLICE_SITE_REGION Dhc16F INTRON Dhc16F
2R	12308878	2R_12308878_SNP [dm3] 2R_16421373_SNP [dm6]	G	A	1.364e^-5	0.969	INTRON Sema-2b
3R	9714127	3R_9714127_SNP [dm3] 3R_13888405_SNP [dm6]	C	T	1.377e^-5	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15246936	3L_15246936_SNP [dm3] 3L_15253836_SNP [dm6]	A	G	1.486e^-5	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5091444	X_5091444_SNP [dm3] X_5197411_SNP [dm6]	T	C	1.553e^-5	0.969	INTRON rg & 1 other
3L	10009328	3L_10009328_SNP [dm3] 3L_10016228_SNP [dm6]	C	T	1.573e^-5	0.969	INTRON dpr6
3L	9732908	3L_9732908_SNP [dm3] 3L_9739808_SNP [dm6]	G	A	1.658e^-5	0.969	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	7382102	3L_7382102_SNP [dm3] 3L_7389002_SNP [dm6]	T	C	1.663e^-5	0.969	INTERGENIC
3R	16857467	3R_16857467_SNP [dm3] 3R_21031745_SNP [dm6]	G	A	1.703e^-5	0.969	SPLICE_SITE_REGION Dhc93AB INTRON Dhc93AB
3L	15246939	3L_15246939_SNP [dm3] 3L_15253839_SNP [dm6]	C	T	1.765e^-5	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8552804	3L_8552804_SNP [dm3] 3L_8559704_SNP [dm6]	T	A	1.850e^-5	0.969	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15285324	2L_15285324_SNP [dm3] 2L_15285324_SNP [dm6]	G	A	1.977e^-5	0.969	NON_SYNONYMOUS_CODING CG15263
3L	8552786	3L_8552786_DEL [dm3] 3L_8559686_DEL [dm6]	AAGTTTTTGTTTGGTGA...	T	2.028e^-5	0.969	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11623798	2L_11623798_SNP [dm3] 2L_11623798_SNP [dm6]	T	G	2.189e^-5	0.969	SYNONYMOUS_CODING kek2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10177649	2L_10177649_DEL [dm3] 2L_10177649_DEL [dm6]	TT	T	2.346e^-5	0.969	INTRON CG44153
3L	10825312	3L_10825312_SNP [dm3] 3L_10832212_SNP [dm6]	T	C	2.478e^-5	0.969	INTERGENIC
2R	19628144	2R_19628144_SNP [dm3] 2R_23740621_SNP [dm6]	C	G	2.512e^-5	0.969	INTRON egl
3L	3859487	3L_3859487_SNP [dm3] 3L_3859487_SNP [dm6]	A	G	2.646e^-5	0.969	INTRON Awh	TF binding site mE1_TFBS_cad
2R	17028143	2R_17028143_SNP [dm3] 2R_21140638_SNP [dm6]	A	G	2.791e^-5	0.969	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	20706579	3R_20706579_SNP [dm3] 3R_24880857_SNP [dm6]	A	G	2.801e^-5	0.969	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
2L	9932917	2L_9932917_SNP [dm3] 2L_9932917_SNP [dm6]	T	C	2.861e^-5	0.969	SYNONYMOUS_CODING Cpr30F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11507215	2L_11507215_SNP [dm3] 2L_11507215_SNP [dm6]	A	C	2.879e^-5	0.969	NON_SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad
2L	7680333	2L_7680333_DEL [dm3] 2L_7680333_DEL [dm6]	ATCTATATA	A	2.890e^-5	0.969	INTRON Myo28B1
3R	24598995	3R_24598995_SNP [dm3] 3R_28773273_SNP [dm6]	A	G	2.996e^-5	0.969	INTERGENIC
3R	9604613	3R_9604613_DEL [dm3] 3R_13778891_DEL [dm6]	AGCATAACCCTAA...	A	3.142e^-5	0.969	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11507729	2L_11507729_SNP [dm3] 2L_11507729_SNP [dm6]	A	G	3.206e^-5	0.969	SYNONYMOUS_CODING spz4 DOWNSTREAM CG6509	TF binding site mE1_TFBS_cad
2R	5829107	2R_5829107_SNP [dm3] 2R_9941602_SNP [dm6]	T	A	3.235e^-5	0.969	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	12102774	3R_12102774_SNP [dm3] 3R_16277052_SNP [dm6]	T	C	3.239e^-5	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15488872	2R_15488872_SNP [dm3] 2R_19601367_SNP [dm6]	C	T	3.243e^-5	0.969	INTRON sm
2R	15488868	2R_15488868_SNP [dm3] 2R_19601363_SNP [dm6]	T	A	3.421e^-5	0.969	INTRON sm
3R	10134223	3R_10134223_SNP [dm3] 3R_14308501_SNP [dm6]	T	G	3.433e^-5	0.969	UTR_5_PRIME su_Hw_ UPSTREAM RpII15 INTRON su_Hw_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	11508124	2L_11508124_SNP [dm3] 2L_11508124_SNP [dm6]	T	A	3.582e^-5	0.969	UTR_3_PRIME spz4 DOWNSTREAM CG6509
2R	5829526	2R_5829526_SNP [dm3] 2R_9942021_SNP [dm6]	C	A	3.616e^-5	0.969	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	10718344	3L_10718344_SNP [dm3] 3L_10725244_SNP [dm6]	T	A	3.685e^-5	0.969	INTERGENIC
2L	18867476	2L_18867476_SNP [dm3] 2L_18867476_SNP [dm6]	A	T	3.856e^-5	0.969	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1637781	2R_1637781_SNP [dm3] 2R_5750276_SNP [dm6]	G	T	3.931e^-5	0.969	INTERGENIC
X	16017447	X_16017447_SNP [dm3] X_16123414_SNP [dm6]	T	C	3.950e^-5	0.969	INTRON disco-r
2R	7029701	2R_7029701_SNP [dm3] 2R_11142196_SNP [dm6]	T	C	4.062e^-5	0.969	INTRON CG13229
3R	10130552	3R_10130552_SNP [dm3] 3R_14304830_SNP [dm6]	A	G	4.093e^-5	0.969	NON_SYNONYMOUS_CODING su_Hw_ DOWNSTREAM CG3259
3R	6053184	3R_6053184_SNP [dm3] 3R_10227462_SNP [dm6]	T	A	4.321e^-5	0.969	INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15848537	3L_15848537_SNP [dm3] 3L_15855437_SNP [dm6]	T	G	4.321e^-5	0.969	INTRON pHCl
X	13932160	X_13932160_SNP [dm3] X_14038127_SNP [dm6]	A	G	4.401e^-5	0.969	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6539202	2R_6539202_SNP [dm3] 2R_10651697_SNP [dm6]	T	G	4.422e^-5	0.969	INTERGENIC
3L	7109350	3L_7109350_SNP [dm3] 3L_7116250_SNP [dm6]	T	A	4.465e^-5	0.969	INTRON form3
3R	19382958	3R_19382958_SNP [dm3] 3R_23557236_SNP [dm6]	G	A	4.498e^-5	0.969	UPSTREAM beat-IV & 1 other INTERGENIC
2R	16818215	2R_16818215_SNP [dm3] 2R_20930710_SNP [dm6]	T	C	4.514e^-5	0.969	INTRON Rx
2R	5830088	2R_5830088_SNP [dm3] 2R_9942583_SNP [dm6]	T	A	4.553e^-5	0.969	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2R	6649894	2R_6649894_SNP [dm3] 2R_10762389_SNP [dm6]	G	A	4.575e^-5	0.969	DOWNSTREAM CR43605 INTRON CG33144
3R	20368884	3R_20368884_SNP [dm3] 3R_24543162_SNP [dm6]	C	G	4.608e^-5	0.969	INTRON CG5789
2R	19358354	2R_19358354_SNP [dm3] 2R_23470831_SNP [dm6]	G	A	4.638e^-5	0.969	SYNONYMOUS_CODING Or59b INTRON CG43795
3R	12104366	3R_12104366_SNP [dm3] 3R_16278644_SNP [dm6]	T	C	4.641e^-5	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6539339	2R_6539339_SNP [dm3] 2R_10651834_SNP [dm6]	C	A	4.687e^-5	0.969	INTERGENIC
2L	6734745	2L_6734745_SNP [dm3] 2L_6734745_SNP [dm6]	C	T	4.746e^-5	0.969	SYNONYMOUS_CODING TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15826494	3R_15826494_DEL [dm3] 3R_20000772_DEL [dm6]	GAAACAGATCTTAATGCTAG...	G	4.792e^-5	0.969	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3L	17815277	3L_17815277_SNP [dm3] 3L_17822177_SNP [dm6]	T	G	4.805e^-5	0.969	NON_SYNONYMOUS_CODING Ir75c
X	17962133	X_17962133_SNP [dm3] X_18068100_SNP [dm6]	T	A	4.857e^-5	0.969	SYNONYMOUS_CODING Dhc16F
3L	3532165	3L_3532165_SNP [dm3] 3L_3532165_SNP [dm6]	T	C	4.885e^-5	0.969	INTRON Eip63E
2R	19608279	2R_19608279_SNP [dm3] 2R_23720756_SNP [dm6]	G	A	4.952e^-5	0.969	UPSTREAM CG18128 INTRON Sesn EXON CR45325
X	14434973	X_14434973_SNP [dm3] X_14540940_SNP [dm6]	A	G	4.952e^-5	0.969	EXON CR45521
3R	12626076	3R_12626076_SNP [dm3] 3R_16800354_SNP [dm6]	A	G	4.979e^-5	0.969	UPSTREAM CR45750 & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers
2R	5829932	2R_5829932_SNP [dm3] 2R_9942427_SNP [dm6]	A	T	4.991e^-5	0.969	INTRON Mef2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	20368664	3R_20368664_SNP [dm3] 3R_24542942_SNP [dm6]	C	T	5.114e^-5	0.969	INTRON CG5789
3R	12722585	3R_12722585_SNP [dm3] 3R_16896863_SNP [dm6]	T	C	5.118e^-5	0.969	UPSTREAM iab-8 INTRON iab-8 & 1 other	TF binding site mE1_TFBS_cad
3L	12219209	3L_12219209_SNP [dm3] 3L_12226109_SNP [dm6]	C	A	5.204e^-5	0.969	INTRON app
3R	20706724	3R_20706724_SNP [dm3] 3R_24881002_SNP [dm6]	C	G	5.297e^-5	0.969	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
2R	13119399	2R_13119399_SNP [dm3] 2R_17231894_SNP [dm6]	T	C	5.315e^-5	0.969	INTRON mbl
3L	15246948	3L_15246948_SNP [dm3] 3L_15253848_SNP [dm6]	C	G	5.355e^-5	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10718334	3L_10718334_SNP [dm3] 3L_10725234_SNP [dm6]	C	A	5.495e^-5	0.969	INTERGENIC
2R	5847821	2R_5847821_SNP [dm3] 2R_9960316_SNP [dm6]	G	C	5.624e^-5	0.969	UPSTREAM CG15863 INTRON Pal1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10302088	3R_10302088_SNP [dm3] 3R_14476366_SNP [dm6]	C	T	5.693e^-5	0.969	INTRON cv-c
2R	10006736	2R_10006736_SNP [dm3] 2R_14119231_SNP [dm6]	C	T	5.724e^-5	0.969	INTRON Prosap
2L	5284689	2L_5284689_SNP [dm3] 2L_5284689_SNP [dm6]	C	T	5.795e^-5	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12722542	3R_12722542_SNP [dm3] 3R_16896820_SNP [dm6]	C	A	5.807e^-5	0.969	UPSTREAM iab-8 INTRON iab-8 & 1 other	TF binding site mE1_TFBS_cad
2R	4753063	2R_4753063_DEL [dm3] 2R_8865558_DEL [dm6]	GTTATTCG	G	5.852e^-5	0.969	INTRON RyR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	5.890e^-5	0.969	INTRON Exn
X	17961375	X_17961375_SNP [dm3] X_18067342_SNP [dm6]	C	T	5.893e^-5	0.969	SPLICE_SITE_REGION Dhc16F INTRON Dhc16F
3R	12132123	3R_12132123_SNP [dm3] 3R_16306401_SNP [dm6]	T	C	6.035e^-5	0.969	SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22965695	3L_22965695_SNP [dm3] 3L_22972595_SNP [dm6]	G	C	6.087e^-5	0.969	INTERGENIC
3L	2147547	3L_2147547_SNP [dm3] 3L_2147547_SNP [dm6]	T	A	6.088e^-5	0.969	INTRON zormin
2R	15488814	2R_15488814_SNP [dm3] 2R_19601309_SNP [dm6]	G	A	6.095e^-5	0.969	INTRON sm
3L	3532136	3L_3532136_SNP [dm3] 3L_3532136_SNP [dm6]	G	A	6.288e^-5	0.969	INTRON Eip63E
3R	10130549	3R_10130549_SNP [dm3] 3R_14304827_SNP [dm6]	C	A	6.350e^-5	0.969	NON_SYNONYMOUS_CODING su_Hw_ DOWNSTREAM CG3259
3L	16154344	3L_16154344_SNP [dm3] 3L_16161244_SNP [dm6]	C	T	6.406e^-5	0.969	INTRON CG5151
3R	10132151	3R_10132151_SNP [dm3] 3R_14306429_SNP [dm6]	T	A	6.425e^-5	0.969	SYNONYMOUS_CODING su_Hw_
3R	12104367	3R_12104367_SNP [dm3] 3R_16278645_SNP [dm6]	C	T	6.554e^-5	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17027902	2R_17027902_SNP [dm3] 2R_21140397_SNP [dm6]	G	A	6.562e^-5	0.969	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	22946407	3L_22946407_SNP [dm3] 3L_22953307_SNP [dm6]	C	G	6.602e^-5	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18311675	2R_18311675_SNP [dm3] 2R_22424170_SNP [dm6]	C	A	6.767e^-5	0.969	SYNONYMOUS_CODING rad50
3R	18479685	3R_18479685_SNP [dm3] 3R_22653963_SNP [dm6]	G	A	6.863e^-5	0.969	INTRON CG45058
3R	12673852	3R_12673852_SNP [dm3] 3R_16848130_SNP [dm6]	G	T	6.887e^-5	0.969	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	11426964	2L_11426964_SNP [dm3] 2L_11426964_SNP [dm6]	G	A	6.936e^-5	0.969	INTERGENIC
2R	19347910	2R_19347910_SNP [dm3] 2R_23460387_SNP [dm6]	T	A	6.974e^-5	0.969	INTRON CG43795
2R	13651038	2R_13651038_SNP [dm3] 2R_17763533_SNP [dm6]	G	T	7.014e^-5	0.969	SYNONYMOUS_CODING CG5009
X	10796725	X_10796725_SNP [dm3] X_10902692_SNP [dm6]	C	T	7.034e^-5	0.969	DOWNSTREAM CG15208 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	22916473	3L_22916473_SNP [dm3] 3L_22923373_SNP [dm6]	A	G	7.047e^-5	0.969	UTR_3_PRIME CG12768
3L	7011827	3L_7011827_SNP [dm3] 3L_7018727_SNP [dm6]	A	G	7.082e^-5	0.969	INTRON Mp
3L	14475390	3L_14475390_SNP [dm3] 3L_14482290_SNP [dm6]	G	A	7.147e^-5	0.969	INTRON bbg
X	17965550	X_17965550_MNP [dm3] X_18071517_MNP [dm6]	AGG	CAA	7.505e^-5	0.969	INTRON Dhc16F	TF binding site mE1_TFBS_chinmo
2R	8650195	2R_8650195_SNP [dm3] 2R_12762690_SNP [dm6]	C	T	7.579e^-5	0.969	SYNONYMOUS_CODING CG12374	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12309155	3L_12309155_SNP [dm3] 3L_12316055_SNP [dm6]	G	A	7.747e^-5	0.969	INTERGENIC
X	6534289	X_6534289_SNP [dm3] X_6640256_SNP [dm6]	A	T	7.856e^-5	0.969	INTRON pigs
3R	12105355	3R_12105355_SNP [dm3] 3R_16279633_SNP [dm6]	C	A	7.880e^-5	0.969	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_Trl
3L	10718299	3L_10718299_SNP [dm3] 3L_10725199_SNP [dm6]	G	A	8.045e^-5	0.969	INTERGENIC
2L	7680433	2L_7680433_SNP [dm3] 2L_7680433_SNP [dm6]	C	T	8.054e^-5	0.969	INTRON Myo28B1
2R	12302067	2R_12302067_SNP [dm3] 2R_16414562_SNP [dm6]	C	T	8.102e^-5	0.969	DOWNSTREAM Menl-2 & 1 other INTRON Sema-2b
2L	11507765	2L_11507765_SNP [dm3] 2L_11507765_SNP [dm6]	C	T	8.108e^-5	0.969	SYNONYMOUS_CODING spz4 DOWNSTREAM CG6509	TF binding site mE1_TFBS_cad
2R	15133259	2R_15133259_DEL [dm3] 2R_19245754_DEL [dm6]	TT	T	8.147e^-5	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12104214	3R_12104214_INS [dm3] 3R_16278492_INS [dm6]	A	AAA	8.205e^-5	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15762946	3R_15762946_SNP [dm3] 3R_19937224_SNP [dm6]	G	A	8.224e^-5	0.969	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12105372	3R_12105372_DEL [dm3] 3R_16279650_DEL [dm6]	GAG	G	8.228e^-5	0.969	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_Trl
3L	11282041	3L_11282041_SNP [dm3] 3L_11288941_SNP [dm6]	G	A	8.247e^-5	0.969	SYNONYMOUS_CODING CG6175
2R	1872808	2R_1872808_SNP [dm3] 2R_5985303_SNP [dm6]	A	C	8.329e^-5	0.969	INTRON Src42A
X	17961368	X_17961368_SNP [dm3] X_18067335_SNP [dm6]	A	T	8.368e^-5	0.969	INTRON Dhc16F
3L	12309151	3L_12309151_SNP [dm3] 3L_12316051_SNP [dm6]	T	A	8.527e^-5	0.969	INTERGENIC
3L	1033913	3L_1033913_SNP [dm3] 3L_1033913_SNP [dm6]	T	C	8.578e^-5	0.969	UTR_5_PRIME trio UPSTREAM CG9205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	26328058	3R_26328058_SNP [dm3] 3R_30502336_SNP [dm6]	A	G	8.643e^-5	0.969	INTRON CG31371
2L	5658051	2L_5658051_SNP [dm3] 2L_5658051_SNP [dm6]	G	A	8.690e^-5	0.969	INTRON CG31646	TF binding site BDTNP1_TFBS_dl
3R	18789376	3R_18789376_SNP [dm3] 3R_22963654_SNP [dm6]	A	T	8.707e^-5	0.969	DOWNSTREAM CR43655 INTERGENIC
2L	19183872	2L_19183872_SNP [dm3] 2L_19183872_SNP [dm6]	G	T	8.756e^-5	0.969	UTR_3_PRIME gammaTub37C UPSTREAM CR17567 DOWNSTREAM gammaTub37C
3R	22399522	3R_22399522_SNP [dm3] 3R_26573800_SNP [dm6]	A	T	8.818e^-5	0.969	INTRON scrib	TF binding site mE1_TFBS_chinmo
2L	10232039	2L_10232039_SNP [dm3] 2L_10232039_SNP [dm6]	T	A	8.834e^-5	0.969	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7439073	3L_7439073_SNP [dm3] 3L_7445973_SNP [dm6]	A	T	8.878e^-5	0.969	INTRON CG42458
3L	12309152	3L_12309152_SNP [dm3] 3L_12316052_SNP [dm6]	T	G	9.114e^-5	0.969	INTERGENIC
3L	13149707	3L_13149707_SNP [dm3] 3L_13156607_SNP [dm6]	T	G	9.118e^-5	0.969	INTERGENIC
2R	17636959	2R_17636959_SNP [dm3] 2R_21749454_SNP [dm6]	T	C	9.133e^-5	0.969	INTERGENIC
X	18065456	X_18065456_SNP [dm3] X_18171423_SNP [dm6]	T	G	9.224e^-5	0.969	UTR_3_PRIME Frq1
3R	9714137	3R_9714137_SNP [dm3] 3R_13888415_SNP [dm6]	T	C	9.244e^-5	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14730981	2L_14730981_SNP [dm3] 2L_14730981_SNP [dm6]	T	C	9.293e^-5	0.969	UPSTREAM CG42685 INTERGENIC
2L	22592183	2L_22592183_SNP [dm3] 2L_22699451_SNP [dm6]	C	T	9.327e^-5	0.969	INTRON CG40006
2L	16285845	2L_16285845_SNP [dm3] 2L_16285845_SNP [dm6]	T	A	9.349e^-5	0.969	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13696864	2L_13696864_SNP [dm3] 2L_13696864_SNP [dm6]	A	T	9.358e^-5	0.969	INTRON CG31814
3L	13186417	3L_13186417_SNP [dm3] 3L_13193317_SNP [dm6]	C	A	9.365e^-5	0.969	INTERGENIC
2R	10607804	2R_10607804_SNP [dm3] 2R_14720299_SNP [dm6]	A	G	9.384e^-5	0.969	INTERGENIC
2L	1886436	2L_1886436_SNP [dm3] 2L_1886436_SNP [dm6]	C	T	9.429e^-5	0.969	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10374278	3L_10374278_SNP [dm3] 3L_10381178_SNP [dm6]	C	T	9.525e^-5	0.969	INTERGENIC
3R	5328368	3R_5328368_SNP [dm3] 3R_9502646_SNP [dm6]	A	G	9.650e^-5	0.969	UPSTREAM RhoL INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17028056	2R_17028056_SNP [dm3] 2R_21140551_SNP [dm6]	T	C	9.795e^-5	0.969	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4122613	3L_4122613_SNP [dm3] 3L_4122613_SNP [dm6]	T	A	9.800e^-5	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
3R	2368484	3R_2368484_INS [dm3] 3R_6542762_INS [dm6]	A	AGAAGTGACTGCGTTTCA...	9.806e^-5	0.969	INTRON dpr11
2L	6065949	2L_6065949_SNP [dm3] 2L_6065949_SNP [dm6]	G	A	9.810e^-5	0.969	UTR_5_PRIME Fbw5 UPSTREAM CG9147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11507440	2L_11507440_SNP [dm3] 2L_11507440_SNP [dm6]	G	T	9.989e^-5	0.969	DOWNSTREAM CG6509 INTRON spz4	TF binding site mE1_TFBS_cad
3L	3131764	3L_3131764_SNP [dm3] 3L_3131764_SNP [dm6]	T	C	1.003e^-4	0.969	INTRON CG11537	TF binding site mE1_TFBS_Kr
3L	1478799	3L_1478799_SNP [dm3] 3L_1478799_SNP [dm6]	A	G	1.004e^-4	0.969	UTR_5_PRIME stet DOWNSTREAM robl62A INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11650677	3L_11650677_SNP [dm3] 3L_11657577_SNP [dm6]	G	T	1.010e^-4	0.969	DOWNSTREAM mir-274 INTRON CG32085
3L	15857904	3L_15857904_INS [dm3] 3L_15864804_INS [dm6]	T	TGGATTAGATT...	1.013e^-4	0.969	INTRON pHCl
2R	5847790	2R_5847790_SNP [dm3] 2R_9960285_SNP [dm6]	A	C	1.014e^-4	0.969	SYNONYMOUS_CODING Pal1 UPSTREAM CG15863	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	1.027e^-4	0.969	INTRON Exn
2R	10997755	2R_10997755_SNP [dm3] 2R_15110250_SNP [dm6]	T	C	1.031e^-4	0.969	INTERGENIC
2R	6932341	2R_6932341_SNP [dm3] 2R_11044836_SNP [dm6]	C	T	1.034e^-4	0.969	INTRON luna
3L	9556924	3L_9556924_SNP [dm3] 3L_9563824_SNP [dm6]	A	G	1.036e^-4	0.969	INTRON CG42673
3L	3005498	3L_3005498_SNP [dm3] 3L_3005498_SNP [dm6]	G	A	1.043e^-4	0.969	INTRON FMRFaR
3R	20369719	3R_20369719_SNP [dm3] 3R_24543997_SNP [dm6]	T	C	1.045e^-4	0.969	UPSTREAM CG5789 & 1 other INTERGENIC
3R	10600498	3R_10600498_SNP [dm3] 3R_14774776_SNP [dm6]	C	T	1.050e^-4	0.969	INTRON jvl
3R	16857517	3R_16857517_SNP [dm3] 3R_21031795_SNP [dm6]	C	A	1.054e^-4	0.969	SPLICE_SITE_REGION Dhc93AB INTRON Dhc93AB
X	8013242	X_8013242_DEL [dm3] X_8119209_DEL [dm6]	GGCCTTG	G	1.055e^-4	0.969	CODON_DELETION CG2260 DOWNSTREAM CG1575	TF binding site mE1_TFBS_chinmo
3L	10009349	3L_10009349_SNP [dm3] 3L_10016249_SNP [dm6]	A	G	1.063e^-4	0.969	INTRON dpr6
3L	1478755	3L_1478755_SNP [dm3] 3L_1478755_SNP [dm6]	C	T	1.073e^-4	0.969	DOWNSTREAM robl62A INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1136938	3L_1136938_SNP [dm3] 3L_1136938_SNP [dm6]	C	T	1.093e^-4	0.969	INTERGENIC
2L	13698570	2L_13698570_DEL [dm3] 2L_13698570_DEL [dm6]	CC	C	1.095e^-4	0.969	INTRON CG31814
3R	6354155	3R_6354155_SNP [dm3] 3R_10528433_SNP [dm6]	C	A	1.107e^-4	0.969	INTRON hth	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	17076304	X_17076304_INS [dm3] X_17182271_INS [dm6]	T	TACG	1.107e^-4	0.969	DOWNSTREAM CR44026 INTRON baz
X	17665018	X_17665018_SNP [dm3] X_17770985_SNP [dm6]	C	T	1.109e^-4	0.969	INTRON unc-4
2R	17290738	2R_17290738_SNP [dm3] 2R_21403233_SNP [dm6]	T	A	1.115e^-4	0.969	INTRON Sdc
2R	6784160	2R_6784160_INS [dm3] 2R_10896655_INS [dm6]	C	CTTAATCT	1.121e^-4	0.969	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19886639	2L_19886639_SNP [dm3] 2L_19886639_SNP [dm6]	C	A	1.134e^-4	0.969	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	11454410	3L_11454410_SNP [dm3] 3L_11461310_SNP [dm6]	A	T	1.135e^-4	0.969	INTERGENIC
3R	12667431	3R_12667431_SNP [dm3] 3R_16841709_SNP [dm6]	G	A	1.146e^-4	0.969	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7594851	2L_7594851_SNP [dm3] 2L_7594851_SNP [dm6]	C	T	1.151e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12219177	3L_12219177_SNP [dm3] 3L_12226077_SNP [dm6]	C	T	1.151e^-4	0.969	INTRON app
3L	8830790	3L_8830790_SNP [dm3] 3L_8837690_SNP [dm6]	A	T	1.176e^-4	0.969	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	13713017	3R_13713017_SNP [dm3] 3R_17887295_SNP [dm6]	C	T	1.184e^-4	0.969	INTRON Rim
3L	7638897	3L_7638897_SNP [dm3] 3L_7645797_SNP [dm6]	A	G	1.201e^-4	0.969	INTERGENIC
2R	19358210	2R_19358210_SNP [dm3] 2R_23470687_SNP [dm6]	G	A	1.202e^-4	0.969	SYNONYMOUS_CODING Or59b INTRON CG43795
2L	10177626	2L_10177626_SNP [dm3] 2L_10177626_SNP [dm6]	T	C	1.211e^-4	0.969	INTRON CG44153
3L	11276591	3L_11276591_SNP [dm3] 3L_11283491_SNP [dm6]	A	G	1.214e^-4	0.969	INTERGENIC
2L	16304058	2L_16304058_SNP [dm3] 2L_16304058_SNP [dm6]	A	C	1.222e^-4	0.969	NON_SYNONYMOUS_CODING c_2_M	TF binding site mE1_TFBS_sens
3L	12309105	3L_12309105_SNP [dm3] 3L_12316005_SNP [dm6]	T	A	1.230e^-4	0.969	INTERGENIC
3L	1412595	3L_1412595_SNP [dm3] 3L_1412595_SNP [dm6]	T	C	1.235e^-4	0.969	SYNONYMOUS_CODING CG9168 INTRON Ptp61F
2R	6784186	2R_6784186_SNP [dm3] 2R_10896681_SNP [dm6]	C	A	1.243e^-4	0.969	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13419413	2L_13419413_SNP [dm3] 2L_13419413_SNP [dm6]	T	C	1.243e^-4	0.969	UTR_5_PRIME CG43850 INTRON CG43850 & 1 other
3R	18971335	3R_18971335_SNP [dm3] 3R_23145613_SNP [dm6]	C	T	1.244e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	18809592	3L_18809592_SNP [dm3] 3L_18816492_SNP [dm6]	G	A	1.247e^-4	0.969	INTRON CG14073
3R	14117155	3R_14117155_SNP [dm3] 3R_18291433_SNP [dm6]	C	G	1.259e^-4	0.969	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
4	1115771	4_1115771_SNP [dm3] 4_1095145_SNP [dm6]	A	T	1.259e^-4	0.969	INTRON sv	transposable element FlyBase
3R	14733201	3R_14733201_SNP [dm3] 3R_18907479_SNP [dm6]	C	A	1.261e^-4	0.969	SYNONYMOUS_CODING EndoA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14117152	3R_14117152_SNP [dm3] 3R_18291430_SNP [dm6]	T	C	1.271e^-4	0.969	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1890872	3L_1890872_SNP [dm3] 3L_1890872_SNP [dm6]	G	A	1.275e^-4	0.969	INTRON Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	7729090	2R_7729090_DEL [dm3] 2R_11841585_DEL [dm6]	ATCA	A	1.280e^-4	0.969	UPSTREAM CG34229 DOWNSTREAM S2P INTERGENIC
3L	10088186	3L_10088186_SNP [dm3] 3L_10095086_SNP [dm6]	T	A	1.287e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
3R	12722558	3R_12722558_SNP [dm3] 3R_16896836_SNP [dm6]	T	C	1.306e^-4	0.969	UPSTREAM iab-8 INTRON iab-8 & 1 other	TF binding site mE1_TFBS_cad
3R	23298013	3R_23298013_SNP [dm3] 3R_27472291_SNP [dm6]	G	C	1.320e^-4	0.969	INTERGENIC
3R	12626096	3R_12626096_SNP [dm3] 3R_16800374_SNP [dm6]	A	T	1.323e^-4	0.969	UPSTREAM CR45750 & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers
X	5091383	X_5091383_SNP [dm3] X_5197350_SNP [dm6]	G	T	1.325e^-4	0.969	INTRON rg & 1 other
2L	16304312	2L_16304312_INS [dm3] 2L_16304312_INS [dm6]	A	AA	1.327e^-4	0.969	SPLICE_SITE_REGION c_2_M INTRON c_2_M	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10846832	X_10846832_SNP [dm3] X_10952799_SNP [dm6]	T	C	1.328e^-4	0.969	UPSTREAM Rab9Fb INTRON Myo10A
X	17963938	X_17963938_SNP [dm3] X_18069905_SNP [dm6]	C	T	1.335e^-4	0.969	SYNONYMOUS_CODING Dhc16F	TF binding site mE1_TFBS_chinmo
X	16810780	X_16810780_SNP [dm3] X_16916747_SNP [dm6]	T	C	1.338e^-4	0.969	INTRON CG4928	TF binding site mE1_TFBS_kn
3R	12103312	3R_12103312_SNP [dm3] 3R_16277590_SNP [dm6]	G	T	1.353e^-4	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15316389	2R_15316389_SNP [dm3] 2R_19428884_SNP [dm6]	G	A	1.355e^-4	0.969	UTR_3_PRIME CalpA INTRON CalpA
2R	16758023	2R_16758023_SNP [dm3] 2R_20870518_SNP [dm6]	A	C	1.358e^-4	0.969	UPSTREAM Ipk1 INTRON IM14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	13119393	2R_13119393_SNP [dm3] 2R_17231888_SNP [dm6]	C	G	1.365e^-4	0.969	INTRON mbl
3L	8736850	3L_8736850_SNP [dm3] 3L_8743750_SNP [dm6]	G	C	1.368e^-4	0.969	INTRON Prm	TF binding site BDTNP1_TFBS_twi
2L	12520330	2L_12520330_SNP [dm3] 2L_12520330_SNP [dm6]	T	G	1.381e^-4	0.969	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3L	5815025	3L_5815025_SNP [dm3] 3L_5821925_SNP [dm6]	C	T	1.382e^-4	0.969	INTRON vn
3R	14796830	3R_14796830_SNP [dm3] 3R_18971108_SNP [dm6]	A	C	1.382e^-4	0.969	INTRON CG42613 & 1 other
3R	9227798	3R_9227798_SNP [dm3] 3R_13402076_SNP [dm6]	T	C	1.382e^-4	0.969	UPSTREAM CG9796 DOWNSTREAM CG33977 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12102961	3R_12102961_SNP [dm3] 3R_16277239_SNP [dm6]	T	C	1.386e^-4	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4702340	2L_4702340_SNP [dm3] 2L_4702340_SNP [dm6]	A	C	1.397e^-4	0.969	UPSTREAM Taf12L INTRON CG34351
2R	15082043	2R_15082043_SNP [dm3] 2R_19194538_SNP [dm6]	G	C	1.404e^-4	0.969	INTRON hppy
3L	1900065	3L_1900065_SNP [dm3] 3L_1900065_SNP [dm6]	A	T	1.406e^-4	0.969	DOWNSTREAM CG1887 INTRON CG1887
3L	1412443	3L_1412443_SNP [dm3] 3L_1412443_SNP [dm6]	G	A	1.407e^-4	0.969	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
3R	23901868	3R_23901868_SNP [dm3] 3R_28076146_SNP [dm6]	C	T	1.413e^-4	0.969	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2981275	3L_2981275_SNP [dm3] 3L_2981275_SNP [dm6]	T	G	1.415e^-4	0.969	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7461600	2R_7461600_SNP [dm3] 2R_11574095_SNP [dm6]	G	A	1.430e^-4	0.969	INTERGENIC
3R	12627610	3R_12627610_SNP [dm3] 3R_16801888_SNP [dm6]	G	A	1.432e^-4	0.969	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12627677	3R_12627677_SNP [dm3] 3R_16801955_SNP [dm6]	T	A	1.432e^-4	0.969	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4122621	3L_4122621_INS [dm3] 3L_4122621_INS [dm6]	T	TT	1.437e^-4	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
3L	8028838	3L_8028838_SNP [dm3] 3L_8035738_SNP [dm6]	A	T	1.441e^-4	0.969	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2267305	3L_2267305_SNP [dm3] 3L_2267305_SNP [dm6]	G	A	1.459e^-4	0.969	SYNONYMOUS_CODING CG13806 UPSTREAM obst-I	TF binding site mE1_TFBS_cad
2R	15577892	2R_15577892_SNP [dm3] 2R_19690387_SNP [dm6]	A	T	1.467e^-4	0.969	UPSTREAM CG15126 INTERGENIC
2R	18939318	2R_18939318_SNP [dm3] 2R_23051795_SNP [dm6]	G	T	1.469e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10131884	3L_10131884_INS [dm3] 3L_10138784_INS [dm6]	G	GTCAGTCCGTTG...	1.471e^-4	0.969	INTRON dpr6
3L	11650766	3L_11650766_SNP [dm3] 3L_11657666_SNP [dm6]	C	T	1.480e^-4	0.969	DOWNSTREAM mir-274 INTRON CG32085
3L	10088139	3L_10088139_SNP [dm3] 3L_10095039_SNP [dm6]	A	G	1.480e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2R	5829693	2R_5829693_SNP [dm3] 2R_9942188_SNP [dm6]	A	C	1.497e^-4	0.969	INTRON Mef2	TF binding site mE1_TFBS_sbb
3L	15857924	3L_15857924_SNP [dm3] 3L_15864824_SNP [dm6]	C	T	1.498e^-4	0.969	INTRON pHCl
X	17965323	X_17965323_INS [dm3] X_18071290_INS [dm6]	G	GTTG	1.505e^-4	0.969	INTRON Dhc16F	TF binding site mE1_TFBS_chinmo
3L	2148204	3L_2148204_SNP [dm3] 3L_2148204_SNP [dm6]	A	G	1.508e^-4	0.969	INTRON zormin
2R	16566992	2R_16566992_SNP [dm3] 2R_20679487_SNP [dm6]	A	G	1.510e^-4	0.969	INTERGENIC
3R	20369121	3R_20369121_SNP [dm3] 3R_24543399_SNP [dm6]	C	G	1.512e^-4	0.969	UTR_5_PRIME CG5789 INTRON CG5789
2L	14723675	2L_14723675_DEL [dm3] 2L_14723675_DEL [dm6]	GCTATT	A	1.518e^-4	0.969	DOWNSTREAM CG42685 INTERGENIC
3R	10604199	3R_10604199_MNP [dm3] 3R_14778477_MNP [dm6]	ACGA	TAAG	1.531e^-4	0.969	INTRON jvl
2L	8013465	2L_8013465_SNP [dm3] 2L_8013465_SNP [dm6]	A	T	1.533e^-4	0.969	INTRON Tg
2R	19121472	2R_19121472_SNP [dm3] 2R_23233949_SNP [dm6]	T	A	1.535e^-4	0.969	DOWNSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18121767	3L_18121767_SNP [dm3] 3L_18128667_SNP [dm6]	G	A	1.547e^-4	0.969	DOWNSTREAM Cyp312a1 INTERGENIC
3R	20368947	3R_20368947_SNP [dm3] 3R_24543225_SNP [dm6]	A	C	1.550e^-4	0.969	INTRON CG5789
3R	5387453	3R_5387453_SNP [dm3] 3R_9561731_SNP [dm6]	C	T	1.551e^-4	0.969	UTR_3_PRIME CG9393 DOWNSTREAM MBD-like
X	6760881	X_6760881_DEL [dm3] X_6866848_DEL [dm6]	ATTACACACATA...	A	1.568e^-4	0.969	UTR_5_PRIME CG14434 INTRON CG43736	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	5284612	2L_5284612_SNP [dm3] 2L_5284612_SNP [dm6]	A	C	1.576e^-4	0.969	INTERGENIC
2L	8222016	2L_8222016_SNP [dm3] 2L_8222016_SNP [dm6]	A	T	1.577e^-4	0.969	NON_SYNONYMOUS_CODING Pvr INTRON Pvr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8658254	3L_8658254_SNP [dm3] 3L_8665154_SNP [dm6]	T	G	1.585e^-4	0.969	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23907095	3R_23907095_SNP [dm3] 3R_28081373_SNP [dm6]	C	G	1.594e^-4	0.969	INTRON CG34362
X	4914583	X_4914583_SNP [dm3] X_5020550_SNP [dm6]	A	G	1.599e^-4	0.969	INTRON CR44833	regulatory region REDfly_CRMs
3R	11302238	3R_11302238_SNP [dm3] 3R_15476516_SNP [dm6]	C	A	1.609e^-4	0.969	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10718328	3L_10718328_DEL [dm3] 3L_10725228_DEL [dm6]	CG	C	1.612e^-4	0.969	INTERGENIC
3L	17761467	3L_17761467_SNP [dm3] 3L_17768367_SNP [dm6]	C	T	1.616e^-4	0.969	INTERGENIC
X	6534282	X_6534282_SNP [dm3] X_6640249_SNP [dm6]	A	T	1.621e^-4	0.969	INTRON pigs
2L	16304318	2L_16304318_SNP [dm3] 2L_16304318_SNP [dm6]	A	G	1.625e^-4	0.969	INTRON c_2_M	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9178539	2L_9178539_SNP [dm3] 2L_9178539_SNP [dm6]	A	G	1.628e^-4	0.969	INTRON tai	TF binding site mE1_TFBS_Trl
3L	16752097	3L_16752097_SNP [dm3] 3L_16758997_SNP [dm6]	T	C	1.630e^-4	0.969	INTERGENIC
3L	4122581	3L_4122581_SNP [dm3] 3L_4122581_SNP [dm6]	A	G	1.633e^-4	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
3R	10739739	3R_10739739_SNP [dm3] 3R_14914017_SNP [dm6]	G	C	1.647e^-4	0.969	INTERGENIC
X	8281180	X_8281180_SNP [dm3] X_8387147_SNP [dm6]	G	A	1.651e^-4	0.969	SYNONYMOUS_CODING CG1387	TF binding site mE1_TFBS_chinmo
3L	18395479	3L_18395479_SNP [dm3] 3L_18402379_SNP [dm6]	C	T	1.655e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11163215	2R_11163215_DEL [dm3] 2R_15275710_DEL [dm6]	TTTGCGAGCAGCT...	AGAGAGAA	1.662e^-4	0.969	INTRON Trpm
3L	10009356	3L_10009356_SNP [dm3] 3L_10016256_SNP [dm6]	A	T	1.662e^-4	0.969	INTRON dpr6
3L	7613548	3L_7613548_SNP [dm3] 3L_7620448_SNP [dm6]	C	T	1.673e^-4	0.969	INTRON CG33275
2R	15488711	2R_15488711_SNP [dm3] 2R_19601206_SNP [dm6]	A	T	1.673e^-4	0.969	INTRON sm
2L	16314933	2L_16314933_SNP [dm3] 2L_16314933_SNP [dm6]	G	A	1.676e^-4	0.969	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5404519	2L_5404519_SNP [dm3] 2L_5404519_SNP [dm6]	G	T	1.687e^-4	0.969	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	15488751	2R_15488751_SNP [dm3] 2R_19601246_SNP [dm6]	A	G	1.690e^-4	0.969	INTRON sm
2R	957801	2R_957801_SNP [dm3] 2R_5070296_SNP [dm6]	G	C	1.697e^-4	0.969	UPSTREAM TpnC41C INTERGENIC
2L	9705764	2L_9705764_DEL [dm3] 2L_9705764_DEL [dm6]	GG	G	1.698e^-4	0.969	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	8870164	3L_8870164_SNP [dm3] 3L_8877064_SNP [dm6]	C	T	1.698e^-4	0.969	INTRON dally
3R	19373779	3R_19373779_SNP [dm3] 3R_23548057_SNP [dm6]	A	C	1.699e^-4	0.969	INTERGENIC
3R	12104142	3R_12104142_SNP [dm3] 3R_16278420_SNP [dm6]	A	G	1.699e^-4	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17962127	X_17962127_SNP [dm3] X_18068094_SNP [dm6]	A	G	1.703e^-4	0.969	SYNONYMOUS_CODING Dhc16F
3R	10132122	3R_10132122_SNP [dm3] 3R_14306400_SNP [dm6]	G	T	1.704e^-4	0.969	INTRON su_Hw_
2L	4702331	2L_4702331_SNP [dm3] 2L_4702331_SNP [dm6]	C	T	1.710e^-4	0.969	UPSTREAM Taf12L INTRON CG34351
3L	15857979	3L_15857979_SNP [dm3] 3L_15864879_SNP [dm6]	A	C	1.720e^-4	0.969	INTRON pHCl
3L	1391023	3L_1391023_SNP [dm3] 3L_1391023_SNP [dm6]	C	T	1.729e^-4	0.969	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13720263	2R_13720263_SNP [dm3] 2R_17832758_SNP [dm6]	G	A	1.735e^-4	0.969	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9604575	3R_9604575_SNP [dm3] 3R_13778853_SNP [dm6]	A	T	1.748e^-4	0.969	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_Trl
3L	5506545	3L_5506545_SNP [dm3] 3L_5513445_SNP [dm6]	A	G	1.764e^-4	0.969	NON_SYNONYMOUS_CODING Lkr
3R	10134158	3R_10134158_SNP [dm3] 3R_14308436_SNP [dm6]	G	T	1.764e^-4	0.969	UTR_5_PRIME su_Hw_ UPSTREAM RpII15 INTRON su_Hw_	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	5347149	X_5347149_SNP [dm3] X_5453116_SNP [dm6]	T	C	1.765e^-4	0.969	INTRON SPR
X	18694320	X_18694320_SNP [dm3] X_18800287_SNP [dm6]	G	T	1.776e^-4	0.969	INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6661432	3R_6661432_SNP [dm3] 3R_10835710_SNP [dm6]	A	T	1.778e^-4	0.969	INTRON Cad86C
2L	8345717	2L_8345717_SNP [dm3] 2L_8345717_SNP [dm6]	G	C	1.778e^-4	0.969	UPSTREAM CR45371 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24570627	3R_24570627_SNP [dm3] 3R_28744905_SNP [dm6]	A	T	1.786e^-4	0.969	UPSTREAM AstA-R2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10109339	X_10109339_SNP [dm3] X_10215306_SNP [dm6]	A	T	1.789e^-4	0.969	SYNONYMOUS_CODING CG2962 UTR_3_PRIME l_1_G0230 DOWNSTREAM l_1_G0230	TF binding site mE1_TFBS_chinmo
3L	7549854	3L_7549854_SNP [dm3] 3L_7556754_SNP [dm6]	T	G	1.808e^-4	0.969	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
3L	18069448	3L_18069448_DEL [dm3] 3L_18076348_DEL [dm6]	TTTG	GA	1.811e^-4	0.969	INTERGENIC
2R	19608292	2R_19608292_SNP [dm3] 2R_23720769_SNP [dm6]	T	A	1.813e^-4	0.969	UPSTREAM CG18128 INTRON Sesn EXON CR45325
3L	13149607	3L_13149607_SNP [dm3] 3L_13156507_SNP [dm6]	G	A	1.820e^-4	0.969	INTERGENIC
2L	10231932	2L_10231932_INS [dm3] 2L_10231932_INS [dm6]	T	TAGAAGTCAACTT...	1.832e^-4	0.969	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6672887	2R_6672887_SNP [dm3] 2R_10785382_SNP [dm6]	G	A	1.836e^-4	0.969	DOWNSTREAM CR44300 & 1 other INTRON CG33144 EXON CR44299
2R	19117293	2R_19117293_SNP [dm3] 2R_23229770_SNP [dm6]	C	A	1.839e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10797758	X_10797758_SNP [dm3] X_10903725_SNP [dm6]	A	C	1.840e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	12663648	3R_12663648_DEL [dm3] 3R_16837926_DEL [dm6]	AC	A	1.842e^-4	0.969	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1820135	2R_1820135_SNP [dm3] 2R_5932630_SNP [dm6]	G	A	1.850e^-4	0.969	INTERGENIC
2R	6539542	2R_6539542_SNP [dm3] 2R_10652037_SNP [dm6]	C	G	1.853e^-4	0.969	INTERGENIC
3R	10631978	3R_10631978_DEL [dm3] 3R_14806256_DEL [dm6]	CTC	C	1.857e^-4	0.969	UTR_3_PRIME btsz DOWNSTREAM btsz	TF binding site BDTNP1_TFBS_hb
2R	19902661	2R_19902661_SNP [dm3] 2R_24015138_SNP [dm6]	C	G	1.857e^-4	0.969	SYNONYMOUS_CODING CG4324 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo
2R	5866964	2R_5866964_SNP [dm3] 2R_9979459_SNP [dm6]	T	C	1.863e^-4	0.969	SYNONYMOUS_CODING eve EXON CR43948	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15488723	2R_15488723_SNP [dm3] 2R_19601218_SNP [dm6]	T	A	1.865e^-4	0.969	INTRON sm
3R	4905852	3R_4905852_SNP [dm3] 3R_9080130_SNP [dm6]	G	C	1.880e^-4	0.969	INTRON pum
2R	19944288	2R_19944288_SNP [dm3] 2R_24056765_SNP [dm6]	A	C	1.882e^-4	0.969	NON_SYNONYMOUS_CODING CG13563 INTRON ppk29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5287494	2R_5287494_SNP [dm3] 2R_9399989_SNP [dm6]	C	G	1.886e^-4	0.969	SYNONYMOUS_CODING CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	26110232	3R_26110232_SNP [dm3] 3R_30284510_SNP [dm6]	G	A	1.888e^-4	0.969	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16046144	3R_16046144_SNP [dm3] 3R_20220422_SNP [dm6]	C	A	1.889e^-4	0.969	INTRON Nlg4	TF binding site BDTNP1_TFBS_slp1
3L	2280027	3L_2280027_SNP [dm3] 3L_2280027_SNP [dm6]	C	G	1.891e^-4	0.969	INTERGENIC
2L	3406323	2L_3406323_SNP [dm3] 2L_3406323_SNP [dm6]	A	G	1.894e^-4	0.969	INTRON pgant2
2L	9705794	2L_9705794_SNP [dm3] 2L_9705794_SNP [dm6]	T	C	1.899e^-4	0.969	UTR_5_PRIME CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1478933	3L_1478933_DEL [dm3] 3L_1478933_DEL [dm6]	TG	T	1.901e^-4	0.969	UTR_5_PRIME stet DOWNSTREAM robl62A INTRON stet	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	16710856	X_16710856_SNP [dm3] X_16816823_SNP [dm6]	C	T	1.903e^-4	0.969	UPSTREAM CG4829 & 1 other INTRON CG4829
2R	9210041	2R_9210041_SNP [dm3] 2R_13322536_SNP [dm6]	A	T	1.904e^-4	0.969	INTERGENIC
3L	1574796	3L_1574796_INS [dm3] 3L_1574796_INS [dm6]	T	TAT	1.907e^-4	0.969	DOWNSTREAM CG12004 INTRON CG12004
3R	12104119	3R_12104119_SNP [dm3] 3R_16278397_SNP [dm6]	T	G	1.908e^-4	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1274837	2L_1274837_SNP [dm3] 2L_1274837_SNP [dm6]	A	G	1.912e^-4	0.969	INTRON robo3
2R	17028148	2R_17028148_SNP [dm3] 2R_21140643_SNP [dm6]	C	A	1.913e^-4	0.969	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	6784181	2R_6784181_SNP [dm3] 2R_10896676_SNP [dm6]	C	T	1.914e^-4	0.969	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5339386	3L_5339386_SNP [dm3] 3L_5346286_SNP [dm6]	A	T	1.915e^-4	0.969	UTR_5_PRIME lama
3L	13149601	3L_13149601_SNP [dm3] 3L_13156501_SNP [dm6]	G	A	1.919e^-4	0.969	INTERGENIC
2R	6828368	2R_6828368_SNP [dm3] 2R_10940863_SNP [dm6]	T	C	1.920e^-4	0.969	SYNONYMOUS_CODING Spn47C
3L	10088197	3L_10088197_SNP [dm3] 3L_10095097_SNP [dm6]	T	C	1.923e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2L	3778288	2L_3778288_SNP [dm3] 2L_3778288_SNP [dm6]	T	C	1.925e^-4	0.969	UPSTREAM bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4020830	2L_4020830_SNP [dm3] 2L_4020830_SNP [dm6]	A	C	1.926e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2742136	3L_2742136_SNP [dm3] 3L_2742136_SNP [dm6]	C	T	1.928e^-4	0.969	INTRON Mrtf
X	6567293	X_6567293_SNP [dm3] X_6673260_SNP [dm6]	G	T	1.929e^-4	0.969	SYNONYMOUS_CODING CG3198	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22696851	2L_22696851_SNP [dm3] 2L_22804119_SNP [dm6]	C	A	1.934e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14108433	X_14108433_SNP [dm3] X_14214400_SNP [dm6]	A	G	1.936e^-4	0.969	INTRON l_1_G0007
3L	14246482	3L_14246482_SNP [dm3] 3L_14253382_SNP [dm6]	T	A	1.942e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	1840348	2R_1840348_SNP [dm3] 2R_5952843_SNP [dm6]	A	T	1.943e^-4	0.969	INTERGENIC
3R	12631593	3R_12631593_SNP [dm3] 3R_16805871_SNP [dm6]	T	A	1.948e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6750554	X_6750554_SNP [dm3] X_6856521_SNP [dm6]	C	T	1.951e^-4	0.969	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13513885	2R_13513885_SNP [dm3] 2R_17626380_SNP [dm6]	T	G	1.957e^-4	0.969	INTRON CG10936
2L	18170715	2L_18170715_DEL [dm3] 2L_18170715_DEL [dm6]	AGCAAAAATCGA...	A	1.961e^-4	0.969	INTRON CG42750
2L	1885403	2L_1885403_SNP [dm3] 2L_1885403_SNP [dm6]	A	G	1.961e^-4	0.969	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	14108729	X_14108729_SNP [dm3] X_14214696_SNP [dm6]	G	A	1.962e^-4	0.969	INTRON l_1_G0007
2L	16367297	2L_16367297_DEL [dm3] 2L_16367297_DEL [dm6]	ATA	A	2.002e^-4	0.969	DOWNSTREAM jhamt INTERGENIC
2R	11299553	2R_11299553_SNP [dm3] 2R_15412048_SNP [dm6]	C	T	2.005e^-4	0.969	INTRON CG43729
2R	7636482	2R_7636482_SNP [dm3] 2R_11748977_SNP [dm6]	T	A	2.009e^-4	0.969	INTERGENIC
3R	9714105	3R_9714105_INS [dm3] 3R_13888383_INS [dm6]	T	TT	2.009e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7505483	2R_7505483_SNP [dm3] 2R_11617978_SNP [dm6]	G	A	2.032e^-4	0.969	SYNONYMOUS_CODING Egm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5287488	2R_5287488_SNP [dm3] 2R_9399983_SNP [dm6]	C	A	2.033e^-4	0.969	SYNONYMOUS_CODING CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3L	11961314	3L_11961314_SNP [dm3] 3L_11968214_SNP [dm6]	A	G	2.043e^-4	0.969	NON_SYNONYMOUS_CODING Muc68E	TF binding site mE1_TFBS_sens
2R	17290151	2R_17290151_SNP [dm3] 2R_21402646_SNP [dm6]	G	C	2.048e^-4	0.969	INTRON Sdc
3R	18789340	3R_18789340_SNP [dm3] 3R_22963618_SNP [dm6]	T	G	2.062e^-4	0.969	DOWNSTREAM CR43655 INTERGENIC
3L	3869726	3L_3869726_SNP [dm3] 3L_3869726_SNP [dm6]	T	G	2.064e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8766182	3L_8766182_SNP [dm3] 3L_8773082_SNP [dm6]	C	T	2.071e^-4	0.969	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	7109476	3L_7109476_SNP [dm3] 3L_7116376_SNP [dm6]	T	A	2.077e^-4	0.969	INTRON form3
2R	14601471	2R_14601471_SNP [dm3] 2R_18713966_SNP [dm6]	A	C	2.082e^-4	0.969	INTERGENIC
3L	10088207	3L_10088207_INS [dm3] 3L_10095107_INS [dm6]	C	CGAT	2.086e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2R	6603524	2R_6603524_SNP [dm3] 2R_10716019_SNP [dm6]	A	T	2.094e^-4	0.969	SYNONYMOUS_CODING stan
2L	15441302	2L_15441302_SNP [dm3] 2L_15441302_SNP [dm6]	T	C	2.097e^-4	0.969	UPSTREAM CR44862 INTERGENIC
2L	8798982	2L_8798982_SNP [dm3] 2L_8798982_SNP [dm6]	G	C	2.110e^-4	0.969	INTERGENIC
X	10119309	X_10119309_SNP [dm3] X_10225276_SNP [dm6]	T	C	2.120e^-4	0.969	SYNONYMOUS_CODING CG34408	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24153892	3R_24153892_SNP [dm3] 3R_28328170_SNP [dm6]	A	G	2.122e^-4	0.969	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_Trl
2L	16304517	2L_16304517_SNP [dm3] 2L_16304517_SNP [dm6]	A	G	2.123e^-4	0.969	SYNONYMOUS_CODING c_2_M	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3735581	3L_3735581_SNP [dm3] 3L_3735581_SNP [dm6]	G	A	2.147e^-4	0.969	INTRON CG32264
4	1064537	4_1064537_SNP [dm3] 4_1043911_SNP [dm6]	T	A	2.159e^-4	0.969	INTRON CaMKII
3L	15246981	3L_15246981_SNP [dm3] 3L_15253881_SNP [dm6]	C	A	2.164e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7461607	2R_7461607_SNP [dm3] 2R_11574102_SNP [dm6]	G	A	2.167e^-4	0.969	INTERGENIC
3L	15687247	3L_15687247_SNP [dm3] 3L_15694147_SNP [dm6]	A	C	2.182e^-4	0.969	INTERGENIC
2L	13696833	2L_13696833_SNP [dm3] 2L_13696833_SNP [dm6]	A	G	2.183e^-4	0.969	INTRON CG31814
3R	13261804	3R_13261804_SNP [dm3] 3R_17436082_SNP [dm6]	A	C	2.192e^-4	0.969	INTRON CG5873
3L	2152604	3L_2152604_SNP [dm3] 3L_2152604_SNP [dm6]	G	C	2.208e^-4	0.969	UPSTREAM zormin DOWNSTREAM CG15822 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10199549	2L_10199549_SNP [dm3] 2L_10199549_SNP [dm6]	G	C	2.215e^-4	0.969	UTR_3_PRIME Ripalpha UPSTREAM Sur	TF binding site mE1_TFBS_HSA
2R	8334703	2R_8334703_SNP [dm3] 2R_12447198_SNP [dm6]	T	C	2.227e^-4	0.969	INTRON Dyb
2L	5284758	2L_5284758_SNP [dm3] 2L_5284758_SNP [dm6]	C	G	2.228e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2221775	3L_2221775_SNP [dm3] 3L_2221775_SNP [dm6]	A	T	2.248e^-4	0.969	INTERGENIC
3R	20369323	3R_20369323_SNP [dm3] 3R_24543601_SNP [dm6]	A	C	2.256e^-4	0.969	UPSTREAM CG5789 INTRON CG5789
2L	11623265	2L_11623265_SNP [dm3] 2L_11623265_SNP [dm6]	T	C	2.264e^-4	0.969	SYNONYMOUS_CODING kek2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12146172	3R_12146172_DEL [dm3] 3R_16320450_DEL [dm6]	AC	A	2.273e^-4	0.969	UPSTREAM tRNA:F2:89BC INTRON Sulf1
3R	24285000	3R_24285000_SNP [dm3] 3R_28459278_SNP [dm6]	C	G	2.273e^-4	0.969	INTRON beat-VI
2R	5861284	2R_5861284_SNP [dm3] 2R_9973779_SNP [dm6]	C	G	2.279e^-4	0.969	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16302273	2L_16302273_SNP [dm3] 2L_16302273_SNP [dm6]	G	A	2.281e^-4	0.969	SYNONYMOUS_CODING CG5869 UPSTREAM c_2_M DOWNSTREAM CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24155407	3R_24155407_SNP [dm3] 3R_28329685_SNP [dm6]	G	C	2.289e^-4	0.969	INTRON larp
3R	12706488	3R_12706488_SNP [dm3] 3R_16880766_SNP [dm6]	A	C	2.297e^-4	0.969	INTRON iab-8
2L	11623312	2L_11623312_SNP [dm3] 2L_11623312_SNP [dm6]	C	T	2.298e^-4	0.969	SYNONYMOUS_CODING kek2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12106379	3R_12106379_DEL [dm3] 3R_16280657_DEL [dm6]	ATTAACGTA	A	2.299e^-4	0.969	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14161333	3L_14161333_SNP [dm3] 3L_14168233_SNP [dm6]	A	C	2.310e^-4	0.969	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
X	6765156	X_6765156_SNP [dm3] X_6871123_SNP [dm6]	C	A	2.312e^-4	0.969	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20155209	3L_20155209_SNP [dm3] 3L_20162109_SNP [dm6]	C	T	2.317e^-4	0.969	INTRON CG42674
2L	14657383	2L_14657383_SNP [dm3] 2L_14657383_SNP [dm6]	A	G	2.319e^-4	0.969	INTRON osp	TF binding site mE1_TFBS_inv
2R	16667689	2R_16667689_SNP [dm3] 2R_20780184_SNP [dm6]	G	T	2.326e^-4	0.969	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3L	7549468	3L_7549468_SNP [dm3] 3L_7556368_SNP [dm6]	G	T	2.355e^-4	0.969	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
2L	17596297	2L_17596297_SNP [dm3] 2L_17596297_SNP [dm6]	T	C	2.357e^-4	0.969	INTRON Sytalpha
2L	2184414	2L_2184414_SNP [dm3] 2L_2184414_SNP [dm6]	A	G	2.359e^-4	0.969	EXON CR43751	regulatory region REDfly_CRMs TF binding site mE1_TFBS_disco
2L	8302351	2L_8302351_SNP [dm3] 2L_8302351_SNP [dm6]	A	G	2.364e^-4	0.969	INTRON wol	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	12552310	3R_12552310_SNP [dm3] 3R_16726588_SNP [dm6]	T	C	2.376e^-4	0.969	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
4	1172538	4_1172538_SNP [dm3] 4_1151912_SNP [dm6]	G	A	2.380e^-4	0.969	INTRON CG32017 & 1 other
3L	9087349	3L_9087349_SNP [dm3] 3L_9094249_SNP [dm6]	A	T	2.381e^-4	0.969	INTRON CG32032
X	6269649	X_6269649_SNP [dm3] X_6375616_SNP [dm6]	C	A	2.381e^-4	0.969	INTERGENIC
3L	3953381	3L_3953381_SNP [dm3] 3L_3953381_SNP [dm6]	T	C	2.393e^-4	0.969	UPSTREAM CG14984 DOWNSTREAM CG12605 INTERGENIC
3R	19074891	3R_19074891_SNP [dm3] 3R_23249169_SNP [dm6]	C	A	2.419e^-4	0.969	UPSTREAM CG4467 DOWNSTREAM CG4449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10177836	2L_10177836_SNP [dm3] 2L_10177836_SNP [dm6]	A	T	2.431e^-4	0.969	INTRON CG44153
3R	14047144	3R_14047144_SNP [dm3] 3R_18221422_SNP [dm6]	C	T	2.432e^-4	0.969	NON_SYNONYMOUS_CODING CG7988 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site mE1_TFBS_sens
3R	18394806	3R_18394806_DEL [dm3] 3R_22569084_DEL [dm6]	CC	C	2.432e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16304529	2L_16304529_SNP [dm3] 2L_16304529_SNP [dm6]	A	C	2.436e^-4	0.969	SYNONYMOUS_CODING c_2_M	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12142860	3R_12142860_SNP [dm3] 3R_16317138_SNP [dm6]	A	T	2.436e^-4	0.969	INTRON Sulf1
2R	15273224	2R_15273224_SNP [dm3] 2R_19385719_SNP [dm6]	C	T	2.436e^-4	0.969	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	14590354	2L_14590354_SNP [dm3] 2L_14590354_SNP [dm6]	G	A	2.452e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	669475	4_669475_SNP [dm3] 4_648849_SNP [dm6]	G	C	2.454e^-4	0.969	DOWNSTREAM gw INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	7680258	2L_7680258_SNP [dm3] 2L_7680258_SNP [dm6]	G	A	2.467e^-4	0.969	INTRON Myo28B1
2R	9209234	2R_9209234_SNP [dm3] 2R_13321729_SNP [dm6]	A	T	2.469e^-4	0.969	INTERGENIC
2L	22844176	2L_22844176_SNP [dm3] 2L_22951444_SNP [dm6]	C	T	2.469e^-4	0.969	UPSTREAM CG40005 INTERGENIC
2R	7464476	2R_7464476_SNP [dm3] 2R_11576971_SNP [dm6]	A	G	2.471e^-4	0.969	DOWNSTREAM tou INTERGENIC
3L	4186661	3L_4186661_SNP [dm3] 3L_4186661_SNP [dm6]	G	A	2.474e^-4	0.969	SYNONYMOUS_CODING VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	661882	4_661882_SNP [dm3] 4_641256_SNP [dm6]	T	A	2.476e^-4	0.969	INTRON CG9935
X	20989313	X_20989313_SNP [dm3] X_21118286_SNP [dm6]	A	G	2.481e^-4	0.969	INTRON CG15445
3R	4341333	3R_4341333_SNP [dm3] 3R_8515611_SNP [dm6]	A	G	2.483e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	22693634	2L_22693634_SNP [dm3] 2L_22800902_SNP [dm6]	A	T	2.487e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6539321	2R_6539321_SNP [dm3] 2R_10651816_SNP [dm6]	T	C	2.489e^-4	0.969	INTERGENIC
2R	16818210	2R_16818210_DEL [dm3] 2R_20930705_DEL [dm6]	CT	G	2.490e^-4	0.969	INTRON Rx
3L	3831261	3L_3831261_SNP [dm3] 3L_3831261_SNP [dm6]	G	A	2.499e^-4	0.969	INTRON enc
3L	2266353	3L_2266353_SNP [dm3] 3L_2266353_SNP [dm6]	C	T	2.512e^-4	0.969	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17962055	X_17962055_SNP [dm3] X_18068022_SNP [dm6]	A	G	2.513e^-4	0.969	SYNONYMOUS_CODING Dhc16F
3R	6501135	3R_6501135_SNP [dm3] 3R_10675413_SNP [dm6]	T	A	2.515e^-4	0.969	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13119407	2R_13119407_DEL [dm3] 2R_17231902_DEL [dm6]	CTTGAACATTTTATCAGC...	C	2.515e^-4	0.969	INTRON mbl
2L	5560606	2L_5560606_INS [dm3] 2L_5560606_INS [dm6]	T	TTTCTAA	2.524e^-4	0.969	INTRON GluRIIB
X	7059382	X_7059382_SNP [dm3] X_7165349_SNP [dm6]	T	A	2.528e^-4	0.969	INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
2L	8946973	2L_8946973_SNP [dm3] 2L_8946973_SNP [dm6]	G	A	2.532e^-4	0.969	UPSTREAM C1GalTA INTRON C1GalTA
3L	8145901	3L_8145901_DEL [dm3] 3L_8152801_DEL [dm6]	TT	T	2.534e^-4	0.969	UPSTREAM CG13676 INTERGENIC
3R	24031818	3R_24031818_DEL [dm3] 3R_28206096_DEL [dm6]	TT	T	2.534e^-4	0.969	INTRON CG34354
2R	19353820	2R_19353820_SNP [dm3] 2R_23466297_SNP [dm6]	G	A	2.538e^-4	0.969	INTRON CG43795
X	16993628	X_16993628_SNP [dm3] X_17099595_SNP [dm6]	C	T	2.541e^-4	0.969	INTRON CG4991
2L	3445614	2L_3445614_SNP [dm3] 2L_3445614_SNP [dm6]	A	T	2.544e^-4	0.969	UPSTREAM CG2772 INTERGENIC
3L	7638854	3L_7638854_SNP [dm3] 3L_7645754_SNP [dm6]	A	G	2.549e^-4	0.969	INTERGENIC
2R	13644027	2R_13644027_SNP [dm3] 2R_17756522_SNP [dm6]	T	G	2.551e^-4	0.969	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	2.557e^-4	0.969	INTRON Exn
2R	20391864	2R_20391864_INS [dm3] 2R_24504341_INS [dm6]	A	AATGCGA	2.560e^-4	0.969	INTERGENIC
3R	10390587	3R_10390587_SNP [dm3] 3R_14564865_SNP [dm6]	A	G	2.563e^-4	0.969	UPSTREAM CG8087 INTERGENIC	TF binding site mE1_TFBS_cad
2L	7122507	2L_7122507_SNP [dm3] 2L_7122507_SNP [dm6]	G	A	2.572e^-4	0.969	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	15083500	2R_15083500_SNP [dm3] 2R_19195995_SNP [dm6]	G	A	2.575e^-4	0.969	INTRON hppy
2R	18291426	2R_18291426_SNP [dm3] 2R_22403921_SNP [dm6]	C	T	2.578e^-4	0.969	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16030472	3L_16030472_SNP [dm3] 3L_16037372_SNP [dm6]	A	G	2.584e^-4	0.969	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
4	911048	4_911048_SNP [dm3] 4_890422_SNP [dm6]	T	A	2.591e^-4	0.969	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13
3R	18789473	3R_18789473_SNP [dm3] 3R_22963751_SNP [dm6]	T	A	2.597e^-4	0.969	DOWNSTREAM CR43655 INTERGENIC
3L	18816737	3L_18816737_SNP [dm3] 3L_18823637_SNP [dm6]	G	C	2.606e^-4	0.969	INTRON Cat	TF binding site BDTNP1_TFBS_dl
2L	16306935	2L_16306935_SNP [dm3] 2L_16306935_SNP [dm6]	A	G	2.607e^-4	0.969	UPSTREAM Syx5 DOWNSTREAM c_2_M INTRON CG5861	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8146504	3L_8146504_SNP [dm3] 3L_8153404_SNP [dm6]	T	G	2.610e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9811647	2R_9811647_SNP [dm3] 2R_13924142_SNP [dm6]	C	G	2.623e^-4	0.969	INTRON shot	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3959278	2L_3959278_SNP [dm3] 2L_3959278_SNP [dm6]	G	T	2.629e^-4	0.969	INTRON fred
2R	12974725	2R_12974725_SNP [dm3] 2R_17087220_SNP [dm6]	T	C	2.635e^-4	0.969	INTRON CG30460
3L	10088196	3L_10088196_SNP [dm3] 3L_10095096_SNP [dm6]	C	G	2.639e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
3L	18396970	3L_18396970_SNP [dm3] 3L_18403870_SNP [dm6]	G	A	2.639e^-4	0.969	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	9609657	X_9609657_SNP [dm3] X_9715624_SNP [dm6]	G	T	2.641e^-4	0.969	INTERGENIC
2L	10177452	2L_10177452_SNP [dm3] 2L_10177452_SNP [dm6]	A	T	2.649e^-4	0.969	INTRON CG44153
2L	12314393	2L_12314393_SNP [dm3] 2L_12314393_SNP [dm6]	G	T	2.656e^-4	0.969	DOWNSTREAM aret INTERGENIC
3R	19623789	3R_19623789_SNP [dm3] 3R_23798067_SNP [dm6]	G	A	2.659e^-4	0.969	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8171244	2L_8171244_SNP [dm3] 2L_8171244_SNP [dm6]	G	T	2.660e^-4	0.969	INTRON Piezo
2R	15082093	2R_15082093_SNP [dm3] 2R_19194588_SNP [dm6]	C	T	2.667e^-4	0.969	INTRON hppy
3L	10009297	3L_10009297_SNP [dm3] 3L_10016197_SNP [dm6]	T	A	2.668e^-4	0.969	INTRON dpr6
X	17856344	X_17856344_SNP [dm3] X_17962311_SNP [dm6]	G	A	2.669e^-4	0.969	INTRON Sh	TF binding site mE1_TFBS_HSA
3L	18392337	3L_18392337_SNP [dm3] 3L_18399237_SNP [dm6]	G	C	2.671e^-4	0.969	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
X	7059383	X_7059383_SNP [dm3] X_7165350_SNP [dm6]	A	T	2.672e^-4	0.969	INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
X	9226439	X_9226439_SNP [dm3] X_9332406_SNP [dm6]	G	A	2.674e^-4	0.969	INTRON CG34449
X	10112010	X_10112010_SNP [dm3] X_10217977_SNP [dm6]	T	A	2.683e^-4	0.969	UTR_3_PRIME CG15308 UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3L	18247040	3L_18247040_SNP [dm3] 3L_18253940_SNP [dm6]	A	G	2.686e^-4	0.969	INTERGENIC
2R	17907306	2R_17907306_SNP [dm3] 2R_22019801_SNP [dm6]	A	C	2.689e^-4	0.969	INTRON CG34370
2L	1255845	2L_1255845_SNP [dm3] 2L_1255845_SNP [dm6]	A	T	2.695e^-4	0.969	UPSTREAM robo3 INTERGENIC
3R	27208114	3R_27208114_SNP [dm3] 3R_31382392_SNP [dm6]	C	G	2.699e^-4	0.969	INTRON CG1607
3R	14642795	3R_14642795_SNP [dm3] 3R_18817073_SNP [dm6]	G	A	2.720e^-4	0.969	INTRON CG18208
3L	12308957	3L_12308957_SNP [dm3] 3L_12315857_SNP [dm6]	A	C	2.721e^-4	0.969	INTERGENIC
3L	14421337	3L_14421337_SNP [dm3] 3L_14428237_SNP [dm6]	T	C	2.722e^-4	0.969	UPSTREAM bbg INTRON bbg
X	21462531	X_21462531_SNP [dm3] X_21591504_SNP [dm6]	T	A	2.726e^-4	0.969	INTERGENIC
2R	13638485	2R_13638485_SNP [dm3] 2R_17750980_SNP [dm6]	G	A	2.733e^-4	0.969	SYNONYMOUS_CODING CG5002 DOWNSTREAM CG10931	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10825331	3L_10825331_SNP [dm3] 3L_10832231_SNP [dm6]	C	T	2.737e^-4	0.969	INTERGENIC
3R	12644954	3R_12644954_SNP [dm3] 3R_16819232_SNP [dm6]	G	A	2.746e^-4	0.969	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
2R	5583895	2R_5583895_SNP [dm3] 2R_9696390_SNP [dm6]	G	A	2.753e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_sens
3L	10009306	3L_10009306_SNP [dm3] 3L_10016206_SNP [dm6]	A	G	2.760e^-4	0.969	INTRON dpr6
3L	22914520	3L_22914520_SNP [dm3] 3L_22921420_SNP [dm6]	C	T	2.760e^-4	0.969	INTRON CG12768	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22399524	3R_22399524_SNP [dm3] 3R_26573802_SNP [dm6]	T	A	2.760e^-4	0.969	INTRON scrib	TF binding site mE1_TFBS_chinmo
2R	8771258	2R_8771258_SNP [dm3] 2R_12883753_SNP [dm6]	T	G	2.764e^-4	0.969	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	14732500	2L_14732500_SNP [dm3] 2L_14732500_SNP [dm6]	G	C	2.779e^-4	0.969	DOWNSTREAM CR44857 INTERGENIC
2R	13651192	2R_13651192_DEL [dm3] 2R_17763687_DEL [dm6]	AA	A	2.780e^-4	0.969	DOWNSTREAM OstDelta INTRON CG5009
3L	18396978	3L_18396978_SNP [dm3] 3L_18403878_SNP [dm6]	C	T	2.788e^-4	0.969	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18479726	3R_18479726_SNP [dm3] 3R_22654004_SNP [dm6]	G	A	2.815e^-4	0.969	INTRON CG45058
X	19440734	X_19440734_SNP [dm3] X_19546701_SNP [dm6]	T	C	2.816e^-4	0.969	INTRON CG32532	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18065454	X_18065454_SNP [dm3] X_18171421_SNP [dm6]	A	T	2.818e^-4	0.969	UTR_3_PRIME Frq1
3R	12154706	3R_12154706_SNP [dm3] 3R_16328984_SNP [dm6]	C	T	2.820e^-4	0.969	SYNONYMOUS_CODING CG17930 INTRON Sulf1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3294649	3L_3294649_SNP [dm3] 3L_3294649_SNP [dm6]	G	C	2.825e^-4	0.969	UPSTREAM CG12009 INTRON CG12009
X	1521549	X_1521549_SNP [dm3] X_1627516_SNP [dm6]	T	C	2.835e^-4	0.969	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_chinmo
3R	9683272	3R_9683272_SNP [dm3] 3R_13857550_SNP [dm6]	G	A	2.838e^-4	0.969	INTERGENIC
3L	7613127	3L_7613127_SNP [dm3] 3L_7620027_SNP [dm6]	G	A	2.842e^-4	0.969	INTRON CG33275
X	2561876	X_2561876_SNP [dm3] X_2667843_SNP [dm6]	G	C	2.850e^-4	0.969	INTRON sgg
3R	19623772	3R_19623772_SNP [dm3] 3R_23798050_SNP [dm6]	C	A	2.856e^-4	0.969	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19623777	3R_19623777_SNP [dm3] 3R_23798055_SNP [dm6]	G	C	2.856e^-4	0.969	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19895085	2R_19895085_SNP [dm3] 2R_24007562_SNP [dm6]	G	A	2.859e^-4	0.969	INTRON Unc-89	TF binding site mE1_TFBS_cad
X	6346461	X_6346461_SNP [dm3] X_6452428_SNP [dm6]	C	G	2.866e^-4	0.969	INTRON CG42340
2R	8771245	2R_8771245_SNP [dm3] 2R_12883740_SNP [dm6]	T	G	2.868e^-4	0.969	UPSTREAM CR45141 & 1 other DOWNSTREAM Aats-asp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	7454002	2R_7454002_SNP [dm3] 2R_11566497_SNP [dm6]	G	A	2.880e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2R	17288873	2R_17288873_DEL [dm3] 2R_21401368_DEL [dm6]	AAACACGA	A	2.880e^-4	0.969	INTRON Sdc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1717463	2L_1717463_SNP [dm3] 2L_1717463_SNP [dm6]	A	C	2.882e^-4	0.969	INTRON Rim2
2R	13747050	2R_13747050_SNP [dm3] 2R_17859545_SNP [dm6]	G	A	2.885e^-4	0.969	SYNONYMOUS_CODING olf186-F
2R	9224020	2R_9224020_SNP [dm3] 2R_13336515_SNP [dm6]	T	C	2.895e^-4	0.969	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11569168	3L_11569168_DEL [dm3] 3L_11576068_DEL [dm6]	TACGAAAACATAAGCACATA...	T	2.895e^-4	0.969	DOWNSTREAM CG33271 INTRON CG33489
2R	11299603	2R_11299603_SNP [dm3] 2R_15412098_SNP [dm6]	T	A	2.914e^-4	0.969	INTRON CG43729
3L	15242799	3L_15242799_SNP [dm3] 3L_15249699_SNP [dm6]	G	C	2.920e^-4	0.969	INTERGENIC
3L	15695943	3L_15695943_SNP [dm3] 3L_15702843_SNP [dm6]	C	T	2.934e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11426788	2L_11426788_SNP [dm3] 2L_11426788_SNP [dm6]	G	T	2.941e^-4	0.969	INTERGENIC
X	17961851	X_17961851_SNP [dm3] X_18067818_SNP [dm6]	T	A	2.949e^-4	0.969	SPLICE_SITE_REGION Dhc16F INTRON Dhc16F
2L	18867474	2L_18867474_SNP [dm3] 2L_18867474_SNP [dm6]	G	A	2.950e^-4	0.969	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10919157	3L_10919157_SNP [dm3] 3L_10926057_SNP [dm6]	T	A	2.955e^-4	0.969	INTERGENIC
2L	7582946	2L_7582946_SNP [dm3] 2L_7582946_SNP [dm6]	C	A	2.955e^-4	0.969	SYNONYMOUS_CODING Spn28B
3R	25541394	3R_25541394_SNP [dm3] 3R_29715672_SNP [dm6]	T	C	2.957e^-4	0.969	UPSTREAM Dup99B DOWNSTREAM Obp99d & 1 other INTERGENIC
2R	1371564	2R_1371564_SNP [dm3] 2R_5484059_SNP [dm6]	T	C	2.960e^-4	0.969	INTRON CG30440
X	9814423	X_9814423_SNP [dm3] X_9920390_SNP [dm6]	G	A	2.963e^-4	0.969	INTERGENIC
2L	2702203	2L_2702203_SNP [dm3] 2L_2702203_SNP [dm6]	G	A	2.964e^-4	0.969	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2L	1886465	2L_1886465_SNP [dm3] 2L_1886465_SNP [dm6]	G	A	2.969e^-4	0.969	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15285494	2L_15285494_SNP [dm3] 2L_15285494_SNP [dm6]	A	G	2.970e^-4	0.969	SYNONYMOUS_CODING CG15263
3L	7117907	3L_7117907_SNP [dm3] 3L_7124807_SNP [dm6]	C	T	2.996e^-4	0.969	NON_SYNONYMOUS_CODING msl-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	22713211	2L_22713211_SNP [dm3] 2L_22820479_SNP [dm6]	T	G	2.996e^-4	0.969	INTERGENIC
3R	12899736	3R_12899736_SNP [dm3] 3R_17074014_SNP [dm6]	A	C	3.009e^-4	0.969	UTR_3_PRIME Keap1 DOWNSTREAM mRpS11
3L	16463053	3L_16463053_SNP [dm3] 3L_16469953_SNP [dm6]	C	G	3.022e^-4	0.969	DOWNSTREAM aos INTRON CG33158
3L	10680747	3L_10680747_SNP [dm3] 3L_10687647_SNP [dm6]	A	G	3.026e^-4	0.969	INTRON simj	TF binding site mE1_TFBS_cad
3L	16983457	3L_16983457_SNP [dm3] 3L_16990357_SNP [dm6]	A	T	3.030e^-4	0.969	INTRON Exn
X	5091613	X_5091613_SNP [dm3] X_5197580_SNP [dm6]	T	C	3.034e^-4	0.969	INTRON rg & 1 other
3R	15826518	3R_15826518_SNP [dm3] 3R_20000796_SNP [dm6]	A	C	3.037e^-4	0.969	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	3645187	2L_3645187_SNP [dm3] 2L_3645187_SNP [dm6]	T	A	3.040e^-4	0.969	INTRON for
3R	3121861	3R_3121861_INS [dm3] 3R_7296139_INS [dm6]	A	AATTAA	3.045e^-4	0.969	INTRON rn
X	7059372	X_7059372_SNP [dm3] X_7165339_SNP [dm6]	C	G	3.045e^-4	0.969	INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	9497842	3R_9497842_SNP [dm3] 3R_13672120_SNP [dm6]	A	T	3.053e^-4	0.969	UTR_5_PRIME Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9705787	2L_9705787_DEL [dm3] 2L_9705787_DEL [dm6]	TTAT	T	3.054e^-4	0.969	UTR_5_PRIME CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	14419717	2R_14419717_SNP [dm3] 2R_18532212_SNP [dm6]	T	A	3.054e^-4	0.969	UPSTREAM CG10924 INTRON CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4902387	X_4902387_SNP [dm3] X_5008354_SNP [dm6]	T	C	3.057e^-4	0.969	INTRON CR44833
X	13972350	X_13972350_SNP [dm3] X_14078317_SNP [dm6]	A	C	3.077e^-4	0.969	INTERGENIC
3R	18046594	3R_18046594_SNP [dm3] 3R_22220872_SNP [dm6]	A	C	3.090e^-4	0.969	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14387442	2R_14387442_SNP [dm3] 2R_18499937_SNP [dm6]	A	C	3.092e^-4	0.969	INTERGENIC
2R	19628373	2R_19628373_SNP [dm3] 2R_23740850_SNP [dm6]	C	T	3.093e^-4	0.969	INTRON egl
3L	15977639	3L_15977639_SNP [dm3] 3L_15984539_SNP [dm6]	T	C	3.094e^-4	0.969	SYNONYMOUS_CODING DNApol-delta DOWNSTREAM Arl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	17961869	X_17961869_SNP [dm3] X_18067836_SNP [dm6]	G	T	3.097e^-4	0.969	SYNONYMOUS_CODING Dhc16F
3L	17273518	3L_17273518_SNP [dm3] 3L_17280418_SNP [dm6]	A	G	3.105e^-4	0.969	INTERGENIC
3R	24547200	3R_24547200_SNP [dm3] 3R_28721478_SNP [dm6]	T	A	3.106e^-4	0.969	SYNONYMOUS_CODING htt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25315455	3R_25315455_SNP [dm3] 3R_29489733_SNP [dm6]	T	C	3.109e^-4	0.969	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5327709	3R_5327709_SNP [dm3] 3R_9501987_SNP [dm6]	T	A	3.111e^-4	0.969	INTRON RhoL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13651155	2R_13651155_SNP [dm3] 2R_17763650_SNP [dm6]	A	G	3.111e^-4	0.969	SYNONYMOUS_CODING CG5009 DOWNSTREAM OstDelta
X	5091554	X_5091554_SNP [dm3] X_5197521_SNP [dm6]	C	T	3.118e^-4	0.969	INTRON rg & 1 other
2L	22834034	2L_22834034_DEL [dm3] 2L_22941302_DEL [dm6]	GGAGCCCTCCATGTTTGTAG...	G	3.118e^-4	0.969	UTR_3_PRIME lt DOWNSTREAM lt
2R	19121474	2R_19121474_SNP [dm3] 2R_23233951_SNP [dm6]	G	A	3.130e^-4	0.969	DOWNSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad
2L	10082494	2L_10082494_SNP [dm3] 2L_10082494_SNP [dm6]	A	G	3.142e^-4	0.969	INTRON CG44153
2L	6855623	2L_6855623_SNP [dm3] 2L_6855623_SNP [dm6]	G	A	3.144e^-4	0.969	SYNONYMOUS_CODING l_2_k09022
3R	13951484	3R_13951484_DEL [dm3] 3R_18125762_DEL [dm6]	ATCTGCATCTGTA...	A	3.145e^-4	0.969	INTRON sr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	6828392	2R_6828392_SNP [dm3] 2R_10940887_SNP [dm6]	A	G	3.149e^-4	0.969	SYNONYMOUS_CODING Spn47C
2L	18575989	2L_18575989_SNP [dm3] 2L_18575989_SNP [dm6]	G	A	3.151e^-4	0.969	INTRON Pde11
2R	7458680	2R_7458680_SNP [dm3] 2R_11571175_SNP [dm6]	C	G	3.157e^-4	0.969	INTERGENIC
2L	10199538	2L_10199538_DEL [dm3] 2L_10199538_DEL [dm6]	TTTAATT	C	3.158e^-4	0.969	UTR_3_PRIME Ripalpha UPSTREAM Sur	TF binding site mE1_TFBS_HSA
2R	6784169	2R_6784169_SNP [dm3] 2R_10896664_SNP [dm6]	A	G	3.158e^-4	0.969	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1281044	3L_1281044_SNP [dm3] 3L_1281044_SNP [dm6]	C	T	3.162e^-4	0.969	INTRON CG32333
2L	11441288	2L_11441288_SNP [dm3] 2L_11441288_SNP [dm6]	C	T	3.164e^-4	0.969	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10009324	3L_10009324_SNP [dm3] 3L_10016224_SNP [dm6]	A	T	3.166e^-4	0.969	INTRON dpr6
3R	24449611	3R_24449611_SNP [dm3] 3R_28623889_SNP [dm6]	C	T	3.168e^-4	0.969	INTRON CG10011
2L	10177935	2L_10177935_SNP [dm3] 2L_10177935_SNP [dm6]	G	C	3.169e^-4	0.969	INTRON CG44153
3L	10697599	3L_10697599_INS [dm3] 3L_10704499_INS [dm6]	T	TT	3.171e^-4	0.969	INTERGENIC
X	9364740	X_9364740_DEL [dm3] X_9470707_DEL [dm6]	TA	T	3.172e^-4	0.969	INTRON mgl
2L	6901706	2L_6901706_SNP [dm3] 2L_6901706_SNP [dm6]	T	A	3.182e^-4	0.969	UPSTREAM mir-932 INTRON Nlg2
2L	8797029	2L_8797029_INS [dm3] 2L_8797029_INS [dm6]	T	TGCTTTCACCT...	3.183e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15362554	3R_15362554_SNP [dm3] 3R_19536832_SNP [dm6]	A	G	3.192e^-4	0.969	INTRON Dys
2L	732335	2L_732335_SNP [dm3] 2L_732335_SNP [dm6]	T	A	3.193e^-4	0.969	INTERGENIC
2R	6826898	2R_6826898_SNP [dm3] 2R_10939393_SNP [dm6]	T	C	3.194e^-4	0.969	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C	TF binding site mE1_TFBS_cad
2R	8757089	2R_8757089_SNP [dm3] 2R_12869584_SNP [dm6]	C	T	3.195e^-4	0.969	UPSTREAM bic & 1 other EXON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	1412585	3L_1412585_SNP [dm3] 3L_1412585_SNP [dm6]	G	A	3.202e^-4	0.969	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F
X	17961968	X_17961968_SNP [dm3] X_18067935_SNP [dm6]	T	C	3.211e^-4	0.969	SYNONYMOUS_CODING Dhc16F
3R	19373805	3R_19373805_SNP [dm3] 3R_23548083_SNP [dm6]	A	G	3.215e^-4	0.969	INTERGENIC
2R	1824850	2R_1824850_SNP [dm3] 2R_5937345_SNP [dm6]	C	T	3.215e^-4	0.969	UPSTREAM CR44126 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15083530	2R_15083530_SNP [dm3] 2R_19196025_SNP [dm6]	G	A	3.215e^-4	0.969	INTRON hppy
2L	16312245	2L_16312245_SNP [dm3] 2L_16312245_SNP [dm6]	C	T	3.221e^-4	0.969	SYNONYMOUS_CODING fzy DOWNSTREAM cact	TF binding site mE1_TFBS_sens
X	6914157	X_6914157_SNP [dm3] X_7020124_SNP [dm6]	T	C	3.222e^-4	0.969	INTERGENIC
2L	8013471	2L_8013471_SNP [dm3] 2L_8013471_SNP [dm6]	G	A	3.234e^-4	0.969	INTRON Tg
2L	3099311	2L_3099311_SNP [dm3] 2L_3099311_SNP [dm6]	C	T	3.242e^-4	0.969	INTRON toc
3L	15246986	3L_15246986_SNP [dm3] 3L_15253886_SNP [dm6]	A	T	3.255e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24016496	3R_24016496_SNP [dm3] 3R_28190774_SNP [dm6]	G	A	3.273e^-4	0.969	INTRON CG34354
2R	19121501	2R_19121501_DEL [dm3] 2R_23233978_DEL [dm6]	CAAGT	C	3.274e^-4	0.969	DOWNSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14857898	2R_14857898_SNP [dm3] 2R_18970393_SNP [dm6]	G	A	3.276e^-4	0.969	SYNONYMOUS_CODING prod DOWNSTREAM CG15107	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	903933	2L_903933_SNP [dm3] 2L_903933_SNP [dm6]	A	G	3.287e^-4	0.969	UPSTREAM CR45261 INTERGENIC
3L	17579453	3L_17579453_SNP [dm3] 3L_17586353_SNP [dm6]	G	A	3.287e^-4	0.969	INTRON Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12217355	3L_12217355_SNP [dm3] 3L_12224255_SNP [dm6]	C	G	3.292e^-4	0.969	UTR_5_PRIME app INTRON app
3R	9488780	3R_9488780_SNP [dm3] 3R_13663058_SNP [dm6]	G	A	3.294e^-4	0.969	NON_SYNONYMOUS_CODING B52 SPLICE_SITE_REGION B52 INTRON B52
2L	15463455	2L_15463455_SNP [dm3] 2L_15463455_SNP [dm6]	C	A	3.300e^-4	0.969	EXON CR44863
3R	13262052	3R_13262052_SNP [dm3] 3R_17436330_SNP [dm6]	A	T	3.308e^-4	0.969	INTRON CG5873
2L	17616977	2L_17616977_SNP [dm3] 2L_17616977_SNP [dm6]	C	T	3.309e^-4	0.969	INTERGENIC
2L	17617188	2L_17617188_SNP [dm3] 2L_17617188_SNP [dm6]	T	C	3.309e^-4	0.969	INTERGENIC
3L	9384138	3L_9384138_SNP [dm3] 3L_9391038_SNP [dm6]	A	G	3.314e^-4	0.969	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12054130	2R_12054130_SNP [dm3] 2R_16166625_SNP [dm6]	T	C	3.318e^-4	0.969	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21047995	X_21047995_SNP [dm3] X_21176968_SNP [dm6]	A	C	3.334e^-4	0.969	INTERGENIC
3R	23283377	3R_23283377_SNP [dm3] 3R_27457655_SNP [dm6]	T	G	3.360e^-4	0.969	INTERGENIC
3L	10088211	3L_10088211_SNP [dm3] 3L_10095111_SNP [dm6]	A	G	3.362e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2R	7461591	2R_7461591_SNP [dm3] 2R_11574086_SNP [dm6]	A	T	3.364e^-4	0.969	INTERGENIC
2L	18927537	2L_18927537_INS [dm3] 2L_18927537_INS [dm6]	T	TACACCGGTATCT...	3.371e^-4	0.969	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14635016	2R_14635016_DEL [dm3] 2R_18747511_DEL [dm6]	ACA	A	3.384e^-4	0.969	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
2L	10177054	2L_10177054_SNP [dm3] 2L_10177054_SNP [dm6]	C	A	3.388e^-4	0.969	INTRON CG44153
3L	10009318	3L_10009318_SNP [dm3] 3L_10016218_SNP [dm6]	C	T	3.389e^-4	0.969	INTRON dpr6
2R	12308928	2R_12308928_SNP [dm3] 2R_16421423_SNP [dm6]	A	C	3.391e^-4	0.969	INTRON Sema-2b
2R	12974716	2R_12974716_SNP [dm3] 2R_17087211_SNP [dm6]	C	A	3.398e^-4	0.969	INTRON CG30460
2L	15820851	2L_15820851_SNP [dm3] 2L_15820851_SNP [dm6]	T	A	3.399e^-4	0.969	INTERGENIC
3L	1283445	3L_1283445_SNP [dm3] 3L_1283445_SNP [dm6]	T	C	3.403e^-4	0.969	INTRON CG32333
2L	10232036	2L_10232036_SNP [dm3] 2L_10232036_SNP [dm6]	A	T	3.406e^-4	0.969	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8147247	3L_8147247_SNP [dm3] 3L_8154147_SNP [dm6]	A	G	3.408e^-4	0.969	DOWNSTREAM CG42445 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12473033	3L_12473033_SNP [dm3] 3L_12479933_SNP [dm6]	T	C	3.415e^-4	0.969	INTRON CG10663
3L	4122572	3L_4122572_SNP [dm3] 3L_4122572_SNP [dm6]	C	T	3.416e^-4	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
3R	13262016	3R_13262016_SNP [dm3] 3R_17436294_SNP [dm6]	T	C	3.416e^-4	0.969	INTRON CG5873
3L	10712065	3L_10712065_SNP [dm3] 3L_10718965_SNP [dm6]	A	C	3.417e^-4	0.969	INTERGENIC
2L	16312981	2L_16312981_SNP [dm3] 2L_16312981_SNP [dm6]	C	T	3.422e^-4	0.969	UTR_3_PRIME fzy DOWNSTREAM cact	TF binding site mE1_TFBS_HSA
X	14108659	X_14108659_SNP [dm3] X_14214626_SNP [dm6]	A	T	3.443e^-4	0.969	INTRON l_1_G0007
2R	18260214	2R_18260214_INS [dm3] 2R_22372709_INS [dm6]	A	ATGTATGTA	3.455e^-4	0.969	DOWNSTREAM CR44759 INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13935136	2R_13935136_SNP [dm3] 2R_18047631_SNP [dm6]	G	T	3.464e^-4	0.969	UPSTREAM CG34005 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18118527	3L_18118527_SNP [dm3] 3L_18125427_SNP [dm6]	A	T	3.474e^-4	0.969	INTERGENIC
3L	10718341	3L_10718341_SNP [dm3] 3L_10725241_SNP [dm6]	A	C	3.480e^-4	0.969	INTERGENIC
2R	5542956	2R_5542956_SNP [dm3] 2R_9655451_SNP [dm6]	A	G	3.481e^-4	0.969	INTRON Mmp2
2L	16286202	2L_16286202_SNP [dm3] 2L_16286202_SNP [dm6]	A	G	3.481e^-4	0.969	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	18292477	2R_18292477_SNP [dm3] 2R_22404972_SNP [dm6]	G	A	3.481e^-4	0.969	INTRON CG6044	TF binding site mE1_TFBS_Trl
3L	7439057	3L_7439057_SNP [dm3] 3L_7445957_SNP [dm6]	A	G	3.486e^-4	0.969	INTRON CG42458
3R	22399456	3R_22399456_SNP [dm3] 3R_26573734_SNP [dm6]	A	G	3.490e^-4	0.969	NON_SYNONYMOUS_CODING scrib INTRON scrib
2L	22439783	2L_22439783_SNP [dm3] 2L_22547051_SNP [dm6]	A	G	3.492e^-4	0.969	INTRON CG17490
3R	18086363	3R_18086363_SNP [dm3] 3R_22260641_SNP [dm6]	C	A	3.492e^-4	0.969	INTRON SKIP
2R	5814934	2R_5814934_SNP [dm3] 2R_9927429_SNP [dm6]	T	A	3.496e^-4	0.969	INTRON Mef2
2L	17616332	2L_17616332_SNP [dm3] 2L_17616332_SNP [dm6]	G	C	3.499e^-4	0.969	INTERGENIC
3L	1891074	3L_1891074_SNP [dm3] 3L_1891074_SNP [dm6]	C	A	3.501e^-4	0.969	UTR_3_PRIME Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	18291524	2R_18291524_SNP [dm3] 2R_22404019_SNP [dm6]	T	A	3.503e^-4	0.969	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10718293	3L_10718293_INS [dm3] 3L_10725193_INS [dm6]	C	CTTCTTCGTCAGCGCCAGCA...	3.505e^-4	0.969	INTERGENIC
3R	22399554	3R_22399554_SNP [dm3] 3R_26573832_SNP [dm6]	C	T	3.510e^-4	0.969	INTRON scrib	TF binding site mE1_TFBS_chinmo
2L	17609498	2L_17609498_INS [dm3] 2L_17609498_INS [dm6]	T	TGAA	3.512e^-4	0.969	INTERGENIC
3L	5071891	3L_5071891_SNP [dm3] 3L_5071891_SNP [dm6]	C	A	3.516e^-4	0.969	INTRON Con
2L	10177938	2L_10177938_SNP [dm3] 2L_10177938_SNP [dm6]	G	T	3.520e^-4	0.969	INTRON CG44153
3R	22399566	3R_22399566_SNP [dm3] 3R_26573844_SNP [dm6]	A	T	3.520e^-4	0.969	INTRON scrib	TF binding site mE1_TFBS_chinmo
3R	10600494	3R_10600494_SNP [dm3] 3R_14774772_SNP [dm6]	T	C	3.527e^-4	0.969	INTRON jvl
3R	19590104	3R_19590104_SNP [dm3] 3R_23764382_SNP [dm6]	C	T	3.527e^-4	0.969	SPLICE_SITE_REGION Lsd-1 UTR_5_PRIME Lsd-1 INTRON Lsd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6351089	2R_6351089_DEL [dm3] 2R_10463584_DEL [dm6]	TAT	T	3.528e^-4	0.969	UTR_3_PRIME Galphao DOWNSTREAM Galphao
2R	5823606	2R_5823606_SNP [dm3] 2R_9936101_SNP [dm6]	T	C	3.541e^-4	0.969	INTRON Mef2	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5862449	2R_5862449_DEL [dm3] 2R_9974944_DEL [dm6]	TC	T	3.544e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	12300218	2R_12300218_SNP [dm3] 2R_16412713_SNP [dm6]	A	C	3.547e^-4	0.969	INTRON Sema-2b
2R	5862327	2R_5862327_SNP [dm3] 2R_9974822_SNP [dm6]	G	A	3.555e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21773364	3L_21773364_SNP [dm3] 3L_21780264_SNP [dm6]	A	C	3.558e^-4	0.969	INTERGENIC
X	16140193	X_16140193_SNP [dm3] X_16246160_SNP [dm6]	C	A	3.560e^-4	0.969	INTERGENIC
2R	6932575	2R_6932575_SNP [dm3] 2R_11045070_SNP [dm6]	G	A	3.568e^-4	0.969	INTRON luna
3R	12707394	3R_12707394_SNP [dm3] 3R_16881672_SNP [dm6]	A	G	3.569e^-4	0.969	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3L	1891072	3L_1891072_SNP [dm3] 3L_1891072_SNP [dm6]	C	G	3.570e^-4	0.969	UTR_3_PRIME Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	15784886	3R_15784886_SNP [dm3] 3R_19959164_SNP [dm6]	A	T	3.571e^-4	0.969	INTRON Hs6st
2R	9901999	2R_9901999_SNP [dm3] 2R_14014494_SNP [dm6]	C	A	3.572e^-4	0.969	INTRON mam
X	9169942	X_9169942_SNP [dm3] X_9275909_SNP [dm6]	A	T	3.584e^-4	0.969	UTR_3_PRIME c11.1 DOWNSTREAM CG16892
2R	13119388	2R_13119388_SNP [dm3] 2R_17231883_SNP [dm6]	C	G	3.586e^-4	0.969	INTRON mbl
2L	1876665	2L_1876665_SNP [dm3] 2L_1876665_SNP [dm6]	C	T	3.589e^-4	0.969	INTRON CG31663
3R	20706564	3R_20706564_SNP [dm3] 3R_24880842_SNP [dm6]	A	G	3.590e^-4	0.969	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad
2R	1843786	2R_1843786_SNP [dm3] 2R_5956281_SNP [dm6]	C	G	3.595e^-4	0.969	INTERGENIC	transposable element FlyBase
2R	19609121	2R_19609121_SNP [dm3] 2R_23721598_SNP [dm6]	A	G	3.596e^-4	0.969	UPSTREAM CR45325 INTRON Sesn
3R	24234918	3R_24234918_INS [dm3] 3R_28409196_INS [dm6]	C	GCCCAATTCCCCCTAAGGGT...	3.596e^-4	0.969	INTERGENIC
3L	15246979	3L_15246979_SNP [dm3] 3L_15253879_SNP [dm6]	T	A	3.598e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10233955	3R_10233955_SNP [dm3] 3R_14408233_SNP [dm6]	G	A	3.599e^-4	0.969	INTRON cv-c
3L	4569919	3L_4569919_SNP [dm3] 3L_4569919_SNP [dm6]	G	T	3.605e^-4	0.969	INTRON CG42540
2L	1884973	2L_1884973_SNP [dm3] 2L_1884973_SNP [dm6]	G	A	3.607e^-4	0.969	UTR_5_PRIME CG7337 UPSTREAM CG15358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	6729678	2L_6729678_SNP [dm3] 2L_6729678_SNP [dm6]	C	T	3.618e^-4	0.969	SYNONYMOUS_CODING Liprin-alpha
X	12717098	X_12717098_SNP [dm3] X_12823065_SNP [dm6]	T	A	3.619e^-4	0.969	INTRON Pde9
3L	3964478	3L_3964478_SNP [dm3] 3L_3964478_SNP [dm6]	G	A	3.620e^-4	0.969	UPSTREAM CG12605 INTRON CG12605	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6784159	2R_6784159_SNP [dm3] 2R_10896654_SNP [dm6]	T	A	3.625e^-4	0.969	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6539096	2R_6539096_SNP [dm3] 2R_10651591_SNP [dm6]	C	A	3.642e^-4	0.969	INTERGENIC
2L	1582720	2L_1582720_SNP [dm3] 2L_1582720_SNP [dm6]	A	C	3.643e^-4	0.969	INTRON haf
3R	19590057	3R_19590057_SNP [dm3] 3R_23764335_SNP [dm6]	C	T	3.644e^-4	0.969	START_GAINED Lsd-1 UTR_5_PRIME Lsd-1 INTRON Lsd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7031681	3R_7031681_SNP [dm3] 3R_11205959_SNP [dm6]	C	T	3.653e^-4	0.969	INTRON cu
3R	13386600	3R_13386600_SNP [dm3] 3R_17560878_SNP [dm6]	G	A	3.657e^-4	0.969	INTRON Hmx
3R	15369490	3R_15369490_SNP [dm3] 3R_19543768_SNP [dm6]	A	G	3.660e^-4	0.969	INTRON Dys
2R	3401276	2R_3401276_SNP [dm3] 2R_7513771_SNP [dm6]	T	C	3.664e^-4	0.969	DOWNSTREAM CG1603 INTERGENIC	transposable element FlyBase
3L	12794214	3L_12794214_SNP [dm3] 3L_12801114_SNP [dm6]	G	T	3.668e^-4	0.969	INTRON Atg1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12343993	X_12343993_SNP [dm3] X_12449960_SNP [dm6]	T	G	3.674e^-4	0.969	INTRON Pkcdelta
2R	19619656	2R_19619656_SNP [dm3] 2R_23732133_SNP [dm6]	G	T	3.681e^-4	0.969	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	5639086	2L_5639086_SNP [dm3] 2L_5639086_SNP [dm6]	G	T	3.685e^-4	0.969	INTRON CG31646
3R	25210632	3R_25210632_SNP [dm3] 3R_29384910_SNP [dm6]	C	T	3.691e^-4	0.969	INTRON Ptp99A
3L	2648483	3L_2648483_SNP [dm3] 3L_2648483_SNP [dm6]	T	C	3.691e^-4	0.969	UTR_5_PRIME CG1246
2L	17621123	2L_17621123_SNP [dm3] 2L_17621123_SNP [dm6]	A	G	3.698e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_Trl
X	17963803	X_17963803_SNP [dm3] X_18069770_SNP [dm6]	T	G	3.702e^-4	0.969	INTRON Dhc16F	TF binding site mE1_TFBS_chinmo
3R	10600444	3R_10600444_SNP [dm3] 3R_14774722_SNP [dm6]	A	G	3.702e^-4	0.969	INTRON jvl
3R	16760829	3R_16760829_SNP [dm3] 3R_20935107_SNP [dm6]	C	T	3.704e^-4	0.969	INTRON CG31191
2R	18464040	2R_18464040_SNP [dm3] 2R_22576535_SNP [dm6]	T	A	3.742e^-4	0.969	INTRON dnr1
2R	11299545	2R_11299545_SNP [dm3] 2R_15412040_SNP [dm6]	C	T	3.755e^-4	0.969	INTRON CG43729
X	6765161	X_6765161_SNP [dm3] X_6871128_SNP [dm6]	C	T	3.762e^-4	0.969	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21433082	X_21433082_SNP [dm3] X_21562055_SNP [dm6]	G	A	3.776e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17284993	2R_17284993_SNP [dm3] 2R_21397488_SNP [dm6]	G	A	3.785e^-4	0.969	INTRON Sdc
2L	3644941	2L_3644941_DEL [dm3] 2L_3644941_DEL [dm6]	AA	G	3.799e^-4	0.969	INTRON for
3R	24131950	3R_24131950_SNP [dm3] 3R_28306228_SNP [dm6]	G	A	3.799e^-4	0.969	INTERGENIC
3R	12105616	3R_12105616_SNP [dm3] 3R_16279894_SNP [dm6]	A	C	3.804e^-4	0.969	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	3726053	2L_3726053_SNP [dm3] 2L_3726053_SNP [dm6]	A	T	3.818e^-4	0.969	INTRON Shaw
2L	11780997	2L_11780997_SNP [dm3] 2L_11780997_SNP [dm6]	C	A	3.820e^-4	0.969	INTERGENIC
3L	15246987	3L_15246987_SNP [dm3] 3L_15253887_SNP [dm6]	T	A	3.823e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19959118	2R_19959118_SNP [dm3] 2R_24071595_SNP [dm6]	T	C	3.830e^-4	0.969	INTRON CG3209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20367136	3R_20367136_SNP [dm3] 3R_24541414_SNP [dm6]	G	A	3.833e^-4	0.969	SYNONYMOUS_CODING CG5789
2R	13922302	2R_13922302_INS [dm3] 2R_18034797_INS [dm6]	G	GCGTGTGTGTG...	3.836e^-4	0.969	INTERGENIC
3L	2734623	3L_2734623_SNP [dm3] 3L_2734623_SNP [dm6]	G	C	3.840e^-4	0.969	UTR_5_PRIME Mrtf INTRON Mrtf
2L	6492242	2L_6492242_SNP [dm3] 2L_6492242_SNP [dm6]	T	A	3.842e^-4	0.969	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2L	4692611	2L_4692611_SNP [dm3] 2L_4692611_SNP [dm6]	T	G	3.844e^-4	0.969	INTERGENIC
3R	24153699	3R_24153699_SNP [dm3] 3R_28327977_SNP [dm6]	A	C	3.847e^-4	0.969	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18046287	3R_18046287_INS [dm3] 3R_22220565_INS [dm6]	A	AA	3.858e^-4	0.969	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	3292353	2R_3292353_SNP [dm3] 2R_7404848_SNP [dm6]	T	A	3.868e^-4	0.969	DOWNSTREAM CG43123 & 1 other INTRON Eaf
3L	6171404	3L_6171404_SNP [dm3] 3L_6178304_SNP [dm6]	T	C	3.871e^-4	0.969	NON_SYNONYMOUS_CODING CG7376 DOWNSTREAM CG10274
3R	27207119	3R_27207119_SNP [dm3] 3R_31381397_SNP [dm6]	G	A	3.871e^-4	0.969	UPSTREAM CG1607 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7549825	3L_7549825_SNP [dm3] 3L_7556725_SNP [dm6]	G	A	3.872e^-4	0.969	SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
2R	19645107	2R_19645107_SNP [dm3] 2R_23757584_SNP [dm6]	A	G	3.873e^-4	0.969	INTRON CG9850
3R	12672793	3R_12672793_SNP [dm3] 3R_16847071_SNP [dm6]	G	A	3.891e^-4	0.969	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10607815	2R_10607815_SNP [dm3] 2R_14720310_SNP [dm6]	G	A	3.901e^-4	0.969	INTERGENIC
2L	9203846	2L_9203846_SNP [dm3] 2L_9203846_SNP [dm6]	T	A	3.909e^-4	0.969	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9215778	2R_9215778_SNP [dm3] 2R_13328273_SNP [dm6]	G	T	3.916e^-4	0.969	INTERGENIC
3R	9747463	3R_9747463_SNP [dm3] 3R_13921741_SNP [dm6]	C	A	3.920e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1478996	3L_1478996_SNP [dm3] 3L_1478996_SNP [dm6]	C	T	3.923e^-4	0.969	UPSTREAM stet DOWNSTREAM robl62A INTRON stet	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	9659491	3R_9659491_INS [dm3] 3R_13833769_INS [dm6]	T	TAGT	3.937e^-4	0.969	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4122448	3L_4122448_SNP [dm3] 3L_4122448_SNP [dm6]	C	G	3.945e^-4	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
3L	4122464	3L_4122464_SNP [dm3] 3L_4122464_SNP [dm6]	G	A	3.945e^-4	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
3R	12649857	3R_12649857_SNP [dm3] 3R_16824135_SNP [dm6]	C	T	3.948e^-4	0.969	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	5647764	3R_5647764_SNP [dm3] 3R_9822042_SNP [dm6]	G	C	3.948e^-4	0.969	UPSTREAM CG42857 DOWNSTREAM CG34302 INTERGENIC
X	17856333	X_17856333_SNP [dm3] X_17962300_SNP [dm6]	T	A	3.950e^-4	0.969	INTRON Sh	TF binding site mE1_TFBS_HSA
X	9665039	X_9665039_INS [dm3] X_9771006_INS [dm6]	A	ATA	3.955e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11428797	2L_11428797_SNP [dm3] 2L_11428797_SNP [dm6]	T	A	3.958e^-4	0.969	INTERGENIC
3R	14727310	3R_14727310_SNP [dm3] 3R_18901588_SNP [dm6]	T	A	3.961e^-4	0.969	DOWNSTREAM CG14294 & 2 others INTERGENIC
2R	9212629	2R_9212629_SNP [dm3] 2R_13325124_SNP [dm6]	T	C	3.964e^-4	0.969	INTERGENIC
2R	9213421	2R_9213421_SNP [dm3] 2R_13325916_SNP [dm6]	T	G	3.964e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12546185	3L_12546185_SNP [dm3] 3L_12553085_SNP [dm6]	A	C	3.965e^-4	0.969	INTRON sowah
2R	11882748	2R_11882748_SNP [dm3] 2R_15995243_SNP [dm6]	A	T	3.969e^-4	0.969	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11623348	2L_11623348_SNP [dm3] 2L_11623348_SNP [dm6]	G	A	3.969e^-4	0.969	SYNONYMOUS_CODING kek2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11796094	2R_11796094_DEL [dm3] 2R_15908589_DEL [dm6]	GGATGG	G	3.977e^-4	0.969	INTRON sli	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15969623	2L_15969623_SNP [dm3] 2L_15969623_SNP [dm6]	T	C	3.985e^-4	0.969	INTERGENIC
2L	16284765	2L_16284765_SNP [dm3] 2L_16284765_SNP [dm6]	C	G	3.990e^-4	0.969	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21498390	3R_21498390_SNP [dm3] 3R_25672668_SNP [dm6]	C	T	3.996e^-4	0.969	INTRON Lgr3
3R	21630160	3R_21630160_SNP [dm3] 3R_25804438_SNP [dm6]	C	A	4.000e^-4	0.969	INTERGENIC
2L	10232030	2L_10232030_MNP [dm3] 2L_10232030_MNP [dm6]	AGC	TAT	4.004e^-4	0.969	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13946360	2L_13946360_SNP [dm3] 2L_13946360_SNP [dm6]	C	G	4.004e^-4	0.969	INTRON Ance-3 & 1 other
2R	14699343	2R_14699343_SNP [dm3] 2R_18811838_SNP [dm6]	A	G	4.015e^-4	0.969	UPSTREAM CG15096 INTRON CG15096	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16516106	2R_16516106_SNP [dm3] 2R_20628601_SNP [dm6]	G	T	4.024e^-4	0.969	UTR_3_PRIME Rcd6 DOWNSTREAM CG16742
3L	1467191	3L_1467191_SNP [dm3] 3L_1467191_SNP [dm6]	A	G	4.026e^-4	0.969	SYNONYMOUS_CODING rho INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5114939	2R_5114939_SNP [dm3] 2R_9227434_SNP [dm6]	A	G	4.027e^-4	0.969	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	15281028	3L_15281028_DEL [dm3] 3L_15287928_DEL [dm6]	TCAGCAAAAG	T	4.027e^-4	0.969	INTERGENIC
2R	1831317	2R_1831317_DEL [dm3] 2R_5943812_DEL [dm6]	CTGGTGGGCGTTAAAGTGGG...	C	4.034e^-4	0.969	INTERGENIC
2R	11191515	2R_11191515_SNP [dm3] 2R_15304010_SNP [dm6]	C	T	4.035e^-4	0.969	INTRON Trpm
3L	16461806	3L_16461806_INS [dm3] 3L_16468706_INS [dm6]	T	TGGCAGATAGAAC...	4.036e^-4	0.969	INTRON CG33158	TF binding site mE1_TFBS_inv
X	8357206	X_8357206_SNP [dm3] X_8463173_SNP [dm6]	G	T	4.042e^-4	0.969	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad
3L	6820712	3L_6820712_SNP [dm3] 3L_6827612_SNP [dm6]	A	T	4.049e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4110343	2R_4110343_SNP [dm3] 2R_8222838_SNP [dm6]	C	T	4.050e^-4	0.969	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_sens
3L	916334	3L_916334_SNP [dm3] 3L_916334_SNP [dm6]	G	T	4.051e^-4	0.969	INTRON Glut1
3R	24013436	3R_24013436_SNP [dm3] 3R_28187714_SNP [dm6]	G	A	4.057e^-4	0.969	INTRON CG34354	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1479518	3L_1479518_INS [dm3] 3L_1479518_INS [dm6]	G	AATTT	4.060e^-4	0.969	UPSTREAM stet INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
2L	3690640	2L_3690640_SNP [dm3] 2L_3690640_SNP [dm6]	A	T	4.062e^-4	0.969	INTRON CG34340
3L	11293452	3L_11293452_INS [dm3] 3L_11300352_INS [dm6]	T	TGT	4.063e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
2R	510355	2R_510355_SNP [dm3] 2R_4622850_SNP [dm6]	C	A	4.068e^-4	0.969	UPSTREAM CR44101 INTERGENIC
3R	24159122	3R_24159122_SNP [dm3] 3R_28333400_SNP [dm6]	T	A	4.072e^-4	0.969	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	5861927	2R_5861927_SNP [dm3] 2R_9974422_SNP [dm6]	A	C	4.073e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6828391	2R_6828391_SNP [dm3] 2R_10940886_SNP [dm6]	A	C	4.079e^-4	0.969	NON_SYNONYMOUS_CODING Spn47C
3R	24974889	3R_24974889_SNP [dm3] 3R_29149167_SNP [dm6]	C	T	4.086e^-4	0.969	SYNONYMOUS_CODING Pglym78 UPSTREAM CG11882 DOWNSTREAM ligatin	TF binding site mE1_TFBS_chinmo
2R	1830996	2R_1830996_SNP [dm3] 2R_5943491_SNP [dm6]	G	A	4.089e^-4	0.969	INTERGENIC
X	17961268	X_17961268_SNP [dm3] X_18067235_SNP [dm6]	G	A	4.089e^-4	0.969	SYNONYMOUS_CODING Dhc16F
3R	21642472	3R_21642472_SNP [dm3] 3R_25816750_SNP [dm6]	G	C	4.090e^-4	0.969	DOWNSTREAM CG14354 INTERGENIC
2R	9811645	2R_9811645_SNP [dm3] 2R_13924140_SNP [dm6]	A	G	4.093e^-4	0.969	INTRON shot	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12873988	2L_12873988_SNP [dm3] 2L_12873988_SNP [dm6]	T	C	4.100e^-4	0.969	INTERGENIC
2R	5840258	2R_5840258_SNP [dm3] 2R_9952753_SNP [dm6]	T	G	4.104e^-4	0.969	INTRON Mef2
2R	16758021	2R_16758021_SNP [dm3] 2R_20870516_SNP [dm6]	A	C	4.105e^-4	0.969	UPSTREAM Ipk1 INTRON IM14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	12104136	3R_12104136_SNP [dm3] 3R_16278414_SNP [dm6]	T	C	4.114e^-4	0.969	INTRON gish	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6082618	2R_6082618_SNP [dm3] 2R_10195113_SNP [dm6]	T	C	4.115e^-4	0.969	INTERGENIC
3L	4598478	3L_4598478_DEL [dm3] 3L_4598478_DEL [dm6]	TT	T	4.119e^-4	0.969	UTR_5_PRIME Src64B
X	14434841	X_14434841_SNP [dm3] X_14540808_SNP [dm6]	G	A	4.123e^-4	0.969	EXON CR45521
2R	4752446	2R_4752446_SNP [dm3] 2R_8864941_SNP [dm6]	A	C	4.131e^-4	0.969	INTRON RyR
3R	21584311	3R_21584311_SNP [dm3] 3R_25758589_SNP [dm6]	T	A	4.132e^-4	0.969	INTRON LpR1
3L	967390	3L_967390_SNP [dm3] 3L_967390_SNP [dm6]	G	A	4.134e^-4	0.969	UTR_5_PRIME Glut1
3L	1411616	3L_1411616_SNP [dm3] 3L_1411616_SNP [dm6]	T	C	4.138e^-4	0.969	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	17020971	2L_17020971_SNP [dm3] 2L_17020971_SNP [dm6]	C	A	4.138e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA
X	10796831	X_10796831_SNP [dm3] X_10902798_SNP [dm6]	A	C	4.142e^-4	0.969	DOWNSTREAM CG15208 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	13119304	2R_13119304_SNP [dm3] 2R_17231799_SNP [dm6]	T	G	4.147e^-4	0.969	INTRON mbl
3R	25315452	3R_25315452_SNP [dm3] 3R_29489730_SNP [dm6]	A	C	4.154e^-4	0.969	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18464811	2R_18464811_SNP [dm3] 2R_22577306_SNP [dm6]	T	C	4.179e^-4	0.969	INTRON dnr1
2R	20402119	2R_20402119_SNP [dm3] 2R_24514596_SNP [dm6]	G	A	4.185e^-4	0.969	SYNONYMOUS_CODING Letm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1821533	2L_1821533_SNP [dm3] 2L_1821533_SNP [dm6]	C	T	4.186e^-4	0.969	NON_SYNONYMOUS_CODING CG31933
X	19356325	X_19356325_SNP [dm3] X_19462292_SNP [dm6]	G	T	4.193e^-4	0.969	INTRON kek5
2R	12974695	2R_12974695_SNP [dm3] 2R_17087190_SNP [dm6]	G	A	4.194e^-4	0.969	INTRON CG30460
3L	2878485	3L_2878485_SNP [dm3] 3L_2878485_SNP [dm6]	T	A	4.197e^-4	0.969	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2R	19393537	2R_19393537_SNP [dm3] 2R_23506014_SNP [dm6]	T	C	4.204e^-4	0.969	INTERGENIC
X	14108733	X_14108733_SNP [dm3] X_14214700_SNP [dm6]	C	G	4.206e^-4	0.969	INTRON l_1_G0007
2R	4221948	2R_4221948_SNP [dm3] 2R_8334443_SNP [dm6]	T	A	4.212e^-4	0.969	INTRON pdm3
3L	4190882	3L_4190882_SNP [dm3] 3L_4190882_SNP [dm6]	T	C	4.214e^-4	0.969	SYNONYMOUS_CODING tipE INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9210708	2R_9210708_SNP [dm3] 2R_13323203_SNP [dm6]	C	A	4.216e^-4	0.969	INTERGENIC
2L	11113030	2L_11113030_SNP [dm3] 2L_11113030_SNP [dm6]	C	A	4.221e^-4	0.969	UTR_5_PRIME CG6201 UPSTREAM Gr32a	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	11882483	2R_11882483_SNP [dm3] 2R_15994978_SNP [dm6]	G	A	4.224e^-4	0.969	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo
2L	14731723	2L_14731723_SNP [dm3] 2L_14731723_SNP [dm6]	G	A	4.225e^-4	0.969	DOWNSTREAM CR44857 INTERGENIC
3R	15765322	3R_15765322_SNP [dm3] 3R_19939600_SNP [dm6]	T	A	4.227e^-4	0.969	INTRON Hs6st
3R	23060477	3R_23060477_SNP [dm3] 3R_27234755_SNP [dm6]	C	T	4.253e^-4	0.969	SYNONYMOUS_CODING CG31068 INTRON CG31064
3R	6671140	3R_6671140_SNP [dm3] 3R_10845418_SNP [dm6]	A	G	4.255e^-4	0.969	INTRON Cad86C
2R	6539417	2R_6539417_SNP [dm3] 2R_10651912_SNP [dm6]	A	C	4.263e^-4	0.969	INTERGENIC
2L	5955006	2L_5955006_SNP [dm3] 2L_5955006_SNP [dm6]	C	A	4.265e^-4	0.969	UTR_3_PRIME CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2L	13946297	2L_13946297_SNP [dm3] 2L_13946297_SNP [dm6]	C	T	4.267e^-4	0.969	INTRON Ance-3 & 1 other
3R	12626116	3R_12626116_SNP [dm3] 3R_16800394_SNP [dm6]	T	A	4.270e^-4	0.969	UPSTREAM CR45750 & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers
2R	18872539	2R_18872539_SNP [dm3] 2R_22985016_SNP [dm6]	C	T	4.271e^-4	0.969	NON_SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
2L	16314934	2L_16314934_SNP [dm3] 2L_16314934_SNP [dm6]	G	T	4.282e^-4	0.969	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14115785	3R_14115785_DEL [dm3] 3R_18290063_DEL [dm6]	GAG	G	4.287e^-4	0.969	INTRON l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11141512	2R_11141512_INS [dm3] 2R_15254007_INS [dm6]	A	ACA	4.302e^-4	0.969	INTRON scb	TF binding site mE1_TFBS_cad
2R	6781175	2R_6781175_SNP [dm3] 2R_10893670_SNP [dm6]	T	C	4.304e^-4	0.969	SYNONYMOUS_CODING cag UPSTREAM CG12942 DOWNSTREAM CG30020	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19169629	3R_19169629_DEL [dm3] 3R_23343907_DEL [dm6]	TGT	T	4.312e^-4	0.969	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22628593	2L_22628593_SNP [dm3] 2L_22735861_SNP [dm6]	C	T	4.321e^-4	0.969	INTRON CG40006
2R	19612610	2R_19612610_SNP [dm3] 2R_23725087_SNP [dm6]	T	C	4.325e^-4	0.969	INTRON Sesn
3R	15847903	3R_15847903_SNP [dm3] 3R_20022181_SNP [dm6]	A	G	4.326e^-4	0.969	UPSTREAM CG4433 INTRON psidin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	14737186	3R_14737186_SNP [dm3] 3R_18911464_SNP [dm6]	A	G	4.330e^-4	0.969	SYNONYMOUS_CODING CG14291 DOWNSTREAM EndoA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4122739	3L_4122739_SNP [dm3] 3L_4122739_SNP [dm6]	T	C	4.331e^-4	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
2L	22228189	2L_22228189_DEL [dm3] 2L_22228189_DEL [dm6]	TAATCGCATCTTTAGTGCAG...	T	4.339e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24451708	3R_24451708_SNP [dm3] 3R_28625986_SNP [dm6]	T	C	4.345e^-4	0.969	INTRON CG10011
X	3794630	X_3794630_SNP [dm3] X_3900597_SNP [dm6]	A	G	4.345e^-4	0.969	INTRON CG42541
2R	17803365	2R_17803365_DEL [dm3] 2R_21915860_DEL [dm6]	TGAT	T	4.348e^-4	0.969	INTRON Fili
2R	7029712	2R_7029712_SNP [dm3] 2R_11142207_SNP [dm6]	A	C	4.349e^-4	0.969	INTRON CG13229
2L	14731897	2L_14731897_SNP [dm3] 2L_14731897_SNP [dm6]	C	G	4.352e^-4	0.969	DOWNSTREAM CR44857 INTERGENIC
2L	14732476	2L_14732476_SNP [dm3] 2L_14732476_SNP [dm6]	C	A	4.352e^-4	0.969	DOWNSTREAM CR44857 INTERGENIC
2L	14733314	2L_14733314_SNP [dm3] 2L_14733314_SNP [dm6]	C	G	4.352e^-4	0.969	UPSTREAM CR44857 INTERGENIC
2R	9209604	2R_9209604_SNP [dm3] 2R_13322099_SNP [dm6]	A	T	4.355e^-4	0.969	INTERGENIC
2R	5644896	2R_5644896_SNP [dm3] 2R_9757391_SNP [dm6]	T	C	4.360e^-4	0.969	UTR_3_PRIME CG1690 INTRON trpl
2R	9811662	2R_9811662_SNP [dm3] 2R_13924157_SNP [dm6]	T	C	4.365e^-4	0.969	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11424463	2L_11424463_SNP [dm3] 2L_11424463_SNP [dm6]	T	C	4.365e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
2L	22869210	2L_22869210_SNP [dm3] 2L_22976478_SNP [dm6]	G	T	4.368e^-4	0.969	INTERGENIC
2R	16438015	2R_16438015_SNP [dm3] 2R_20550510_SNP [dm6]	C	A	4.375e^-4	0.969	SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065 UPSTREAM Cpr57A & 1 other	regulatory region REDfly_CRMs
2R	15031173	2R_15031173_SNP [dm3] 2R_19143668_SNP [dm6]	G	A	4.378e^-4	0.969	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15870550	3R_15870550_INS [dm3] 3R_20044828_INS [dm6]	T	TACTAGAT	4.384e^-4	0.969	UPSTREAM CG33934 INTRON CG17193 & 2 others
X	9172527	X_9172527_SNP [dm3] X_9278494_SNP [dm6]	G	A	4.393e^-4	0.969	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15577883	2R_15577883_INS [dm3] 2R_19690378_INS [dm6]	A	ATGGAATA	4.402e^-4	0.969	UPSTREAM CG15126 INTERGENIC
3L	10886604	3L_10886604_DEL [dm3] 3L_10893504_DEL [dm6]	CCATTCACTTATAAT...	A	4.406e^-4	0.969	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	6901672	2L_6901672_SNP [dm3] 2L_6901672_SNP [dm6]	G	A	4.421e^-4	0.969	UPSTREAM mir-932 INTRON Nlg2
4	1016070	4_1016070_SNP [dm3] 4_995444_SNP [dm6]	C	A	4.424e^-4	0.969	INTRON toy	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	7074357	3R_7074357_SNP [dm3] 3R_11248635_SNP [dm6]	A	C	4.431e^-4	0.969	EXON CR43283
2L	9849386	2L_9849386_SNP [dm3] 2L_9849386_SNP [dm6]	G	A	4.442e^-4	0.969	DOWNSTREAM CR43766 INTRON nAChRalpha6
3R	12624686	3R_12624686_INS [dm3] 3R_16798964_INS [dm6]	A	ATATT	4.445e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
X	13167366	X_13167366_SNP [dm3] X_13273333_SNP [dm6]	C	A	4.447e^-4	0.969	UPSTREAM HDAC4 INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10797900	X_10797900_SNP [dm3] X_10903867_SNP [dm6]	A	C	4.459e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	1255963	3L_1255963_SNP [dm3] 3L_1255963_SNP [dm6]	A	G	4.461e^-4	0.969	UTR_3_PRIME CG9130 & 1 other UPSTREAM CG9134
2R	6492406	2R_6492406_SNP [dm3] 2R_10604901_SNP [dm6]	C	G	4.461e^-4	0.969	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9237051	2R_9237051_SNP [dm3] 2R_13349546_SNP [dm6]	T	G	4.464e^-4	0.969	INTRON CR44206	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8171351	2L_8171351_SNP [dm3] 2L_8171351_SNP [dm6]	G	C	4.469e^-4	0.969	INTRON Piezo
2L	8171357	2L_8171357_SNP [dm3] 2L_8171357_SNP [dm6]	A	T	4.469e^-4	0.969	INTRON Piezo
2L	14726083	2L_14726083_SNP [dm3] 2L_14726083_SNP [dm6]	T	A	4.471e^-4	0.969	SYNONYMOUS_CODING CG42685
2R	6061155	2R_6061155_SNP [dm3] 2R_10173650_SNP [dm6]	C	G	4.487e^-4	0.969	INTRON KCNQ
X	8367551	X_8367551_SNP [dm3] X_8473518_SNP [dm6]	T	G	4.490e^-4	0.969	UPSTREAM Cp7Fb DOWNSTREAM Cp7Fa INTRON CG33223
2R	14857814	2R_14857814_SNP [dm3] 2R_18970309_SNP [dm6]	A	G	4.491e^-4	0.969	SYNONYMOUS_CODING prod DOWNSTREAM CG15107	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9824744	2L_9824744_SNP [dm3] 2L_9824744_SNP [dm6]	A	T	4.492e^-4	0.969	INTRON nAChRalpha6
2L	8171234	2L_8171234_SNP [dm3] 2L_8171234_SNP [dm6]	T	G	4.494e^-4	0.969	INTRON Piezo
3R	14355108	3R_14355108_SNP [dm3] 3R_18529386_SNP [dm6]	G	A	4.494e^-4	0.969	INTRON fru
2R	14835174	2R_14835174_SNP [dm3] 2R_18947669_SNP [dm6]	A	G	4.495e^-4	0.969	UTR_5_PRIME sano INTRON sano	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	2536354	3L_2536354_DEL [dm3] 3L_2536354_DEL [dm6]	ATA	A	4.499e^-4	0.969	INTRON Spn	TF binding site mE1_TFBS_chinmo
X	17075900	X_17075900_DEL [dm3] X_17181867_DEL [dm6]	CA	C	4.504e^-4	0.969	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	501204	3R_501204_SNP [dm3] 3R_4675482_SNP [dm6]	A	G	4.512e^-4	0.969	DOWNSTREAM CR44157 INTRON CG43427
3R	24131998	3R_24131998_SNP [dm3] 3R_28306276_SNP [dm6]	A	T	4.512e^-4	0.969	INTERGENIC
3R	8147983	3R_8147983_SNP [dm3] 3R_12322261_SNP [dm6]	G	A	4.526e^-4	0.969	DOWNSTREAM tRNA:CR31432 INTERGENIC
3L	14710167	3L_14710167_SNP [dm3] 3L_14717067_SNP [dm6]	G	A	4.527e^-4	0.969	INTRON ome	regulatory region REDfly_CRMs
2L	5145912	2L_5145912_SNP [dm3] 2L_5145912_SNP [dm6]	T	A	4.527e^-4	0.969	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10674669	3L_10674669_SNP [dm3] 3L_10681569_SNP [dm6]	G	T	4.528e^-4	0.969	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	14725864	2L_14725864_SNP [dm3] 2L_14725864_SNP [dm6]	C	T	4.530e^-4	0.969	SYNONYMOUS_CODING CG42685
3L	7117488	3L_7117488_SNP [dm3] 3L_7124388_SNP [dm6]	A	T	4.531e^-4	0.969	INTRON msl-3	TF binding site mE1_TFBS_sens
3L	7117490	3L_7117490_SNP [dm3] 3L_7124390_SNP [dm6]	T	G	4.531e^-4	0.969	INTRON msl-3	TF binding site mE1_TFBS_sens
2R	13719895	2R_13719895_SNP [dm3] 2R_17832390_SNP [dm6]	G	A	4.532e^-4	0.969	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5506693	3L_5506693_SNP [dm3] 3L_5513593_SNP [dm6]	T	C	4.536e^-4	0.969	NON_SYNONYMOUS_CODING Lkr
X	3862021	X_3862021_SNP [dm3] X_3967988_SNP [dm6]	T	A	4.537e^-4	0.969	UPSTREAM CR45481 INTRON CG6428	TF binding site BDTNP1_TFBS_dl
3R	24133732	3R_24133732_SNP [dm3] 3R_28308010_SNP [dm6]	C	T	4.551e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10129685	3R_10129685_SNP [dm3] 3R_14303963_SNP [dm6]	G	A	4.554e^-4	0.969	SYNONYMOUS_CODING CG3259 DOWNSTREAM su_Hw_	TF binding site mE1_TFBS_cad
2L	22446461	2L_22446461_INS [dm3] 2L_22553729_INS [dm6]	C	CA	4.566e^-4	0.969	UTR_3_PRIME CG17493	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16046082	3R_16046082_SNP [dm3] 3R_20220360_SNP [dm6]	G	A	4.570e^-4	0.969	INTRON Nlg4	TF binding site BDTNP1_TFBS_slp1
3L	10894840	3L_10894840_SNP [dm3] 3L_10901740_SNP [dm6]	A	C	4.573e^-4	0.969	INTERGENIC
2R	14417126	2R_14417126_SNP [dm3] 2R_18529621_SNP [dm6]	C	T	4.573e^-4	0.969	INTRON CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4408620	X_4408620_SNP [dm3] X_4514587_SNP [dm6]	T	A	4.595e^-4	0.969	INTRON CR32773
3R	12644192	3R_12644192_SNP [dm3] 3R_16818470_SNP [dm6]	T	C	4.599e^-4	0.969	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24494812	3R_24494812_SNP [dm3] 3R_28669090_SNP [dm6]	T	A	4.606e^-4	0.969	UPSTREAM CG33346 INTERGENIC
2R	19894767	2R_19894767_SNP [dm3] 2R_24007244_SNP [dm6]	T	A	4.613e^-4	0.969	INTRON Unc-89
2R	6822249	2R_6822249_SNP [dm3] 2R_10934744_SNP [dm6]	G	C	4.619e^-4	0.969	INTERGENIC
2L	22566761	2L_22566761_SNP [dm3] 2L_22674029_SNP [dm6]	A	C	4.623e^-4	0.969	INTRON CG40006
2L	18648431	2L_18648431_SNP [dm3] 2L_18648431_SNP [dm6]	A	G	4.624e^-4	0.969	INTRON MESR3
3L	13404388	3L_13404388_SNP [dm3] 3L_13411288_SNP [dm6]	T	G	4.630e^-4	0.969	UTR_3_PRIME CG10222 DOWNSTREAM CG10222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	7059361	X_7059361_SNP [dm3] X_7165328_SNP [dm6]	G	A	4.633e^-4	0.969	INTRON CG9650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	6653043	2R_6653043_SNP [dm3] 2R_10765538_SNP [dm6]	A	T	4.636e^-4	0.969	INTRON CG33144
3R	16336294	3R_16336294_SNP [dm3] 3R_20510572_SNP [dm6]	C	T	4.640e^-4	0.969	UPSTREAM CG4288 INTRON CG4288
X	6269828	X_6269828_INS [dm3] X_6375795_INS [dm6]	A	ACAAT	4.644e^-4	0.969	INTERGENIC
X	6269834	X_6269834_DEL [dm3] X_6375801_DEL [dm6]	AAAA	A	4.644e^-4	0.969	INTERGENIC
X	6269859	X_6269859_SNP [dm3] X_6375826_SNP [dm6]	T	C	4.644e^-4	0.969	INTERGENIC
2R	17300313	2R_17300313_SNP [dm3] 2R_21412808_SNP [dm6]	C	T	4.647e^-4	0.969	INTRON Sdc
3L	4191069	3L_4191069_SNP [dm3] 3L_4191069_SNP [dm6]	A	C	4.652e^-4	0.969	NON_SYNONYMOUS_CODING tipE INTRON CG18675	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9311728	3R_9311728_SNP [dm3] 3R_13486006_SNP [dm6]	A	C	4.652e^-4	0.969	INTERGENIC
3L	12217321	3L_12217321_SNP [dm3] 3L_12224221_SNP [dm6]	C	T	4.662e^-4	0.969	UTR_5_PRIME app INTRON app
3L	13987224	3L_13987224_SNP [dm3] 3L_13994124_SNP [dm6]	C	A	4.684e^-4	0.969	UPSTREAM 26-29-p & 1 other INTERGENIC
3L	14051707	3L_14051707_SNP [dm3] 3L_14058607_SNP [dm6]	A	G	4.693e^-4	0.969	INTRON CG32138
2L	10232035	2L_10232035_SNP [dm3] 2L_10232035_SNP [dm6]	T	A	4.694e^-4	0.969	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18303260	2R_18303260_SNP [dm3] 2R_22415755_SNP [dm6]	C	G	4.695e^-4	0.969	UTR_5_PRIME qkr58E-2 UPSTREAM qkr58E-2 & 1 other DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	12064260	2L_12064260_SNP [dm3] 2L_12064260_SNP [dm6]	G	A	4.695e^-4	0.969	NON_SYNONYMOUS_CODING CG14946
3R	14797172	3R_14797172_SNP [dm3] 3R_18971450_SNP [dm6]	G	A	4.705e^-4	0.969	INTRON CG42613 & 1 other
2L	15969362	2L_15969362_DEL [dm3] 2L_15969362_DEL [dm6]	GA	G	4.709e^-4	0.969	INTERGENIC
3R	5199046	3R_5199046_SNP [dm3] 3R_9373324_SNP [dm6]	A	T	4.711e^-4	0.969	SPLICE_SITE_REGION FER INTRON FER
3L	1891392	3L_1891392_SNP [dm3] 3L_1891392_SNP [dm6]	A	T	4.717e^-4	0.969	UTR_3_PRIME Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	13972348	X_13972348_SNP [dm3] X_14078315_SNP [dm6]	A	T	4.718e^-4	0.969	INTERGENIC
2R	11595970	2R_11595970_SNP [dm3] 2R_15708465_SNP [dm6]	G	A	4.742e^-4	0.969	INTERGENIC
2L	8796972	2L_8796972_SNP [dm3] 2L_8796972_SNP [dm6]	C	G	4.742e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6619674	2R_6619674_SNP [dm3] 2R_10732169_SNP [dm6]	G	A	4.749e^-4	0.969	UPSTREAM CG12338 & 1 other INTRON CG7220
3L	12217127	3L_12217127_SNP [dm3] 3L_12224027_SNP [dm6]	T	C	4.764e^-4	0.969	INTRON app
X	15422282	X_15422282_SNP [dm3] X_15528249_SNP [dm6]	T	C	4.775e^-4	0.969	INTRON Ac13E
3L	14421336	3L_14421336_SNP [dm3] 3L_14428236_SNP [dm6]	G	C	4.777e^-4	0.969	UPSTREAM bbg INTRON bbg
X	14435071	X_14435071_SNP [dm3] X_14541038_SNP [dm6]	C	T	4.786e^-4	0.969	EXON CR45521
2L	10232077	2L_10232077_SNP [dm3] 2L_10232077_SNP [dm6]	C	T	4.792e^-4	0.969	UPSTREAM eEF1delta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19964488	2R_19964488_DEL [dm3] 2R_24076965_DEL [dm6]	TTCCAA	T	4.796e^-4	0.969	INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	15971401	3L_15971401_SNP [dm3] 3L_15978301_SNP [dm6]	G	A	4.798e^-4	0.969	NON_SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
3R	18789536	3R_18789536_SNP [dm3] 3R_22963814_SNP [dm6]	G	A	4.815e^-4	0.969	DOWNSTREAM CR43655 INTERGENIC
2R	6822271	2R_6822271_DEL [dm3] 2R_10934766_DEL [dm6]	TACTTGT	T	4.815e^-4	0.969	INTERGENIC
X	17960616	X_17960616_SNP [dm3] X_18066583_SNP [dm6]	G	A	4.818e^-4	0.969	SYNONYMOUS_CODING Dhc16F
2R	20128500	2R_20128500_SNP [dm3] 2R_24240977_SNP [dm6]	A	T	4.825e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27208092	3R_27208092_SNP [dm3] 3R_31382370_SNP [dm6]	C	G	4.828e^-4	0.969	INTRON CG1607
3R	24154887	3R_24154887_SNP [dm3] 3R_28329165_SNP [dm6]	G	A	4.833e^-4	0.969	UPSTREAM larp INTRON larp
2L	1887268	2L_1887268_SNP [dm3] 2L_1887268_SNP [dm6]	G	A	4.842e^-4	0.969	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	21359181	X_21359181_SNP [dm3] X_21488154_SNP [dm6]	G	A	4.847e^-4	0.969	INTERGENIC
3R	7069476	3R_7069476_SNP [dm3] 3R_11243754_SNP [dm6]	T	C	4.848e^-4	0.969	NON_SYNONYMOUS_CODING CG17734 UPSTREAM CG5214 INTRON CG17734	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21528625	3R_21528625_DEL [dm3] 3R_25702903_DEL [dm6]	TA	T	4.852e^-4	0.969	INTRON LpR2
2R	15031214	2R_15031214_SNP [dm3] 2R_19143709_SNP [dm6]	T	A	4.856e^-4	0.969	UPSTREAM CR43399 INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5091553	X_5091553_SNP [dm3] X_5197520_SNP [dm6]	G	C	4.873e^-4	0.969	INTRON rg & 1 other
3L	13403826	3L_13403826_SNP [dm3] 3L_13410726_SNP [dm6]	A	G	4.880e^-4	0.969	DOWNSTREAM CG10222 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
3R	12707681	3R_12707681_SNP [dm3] 3R_16881959_SNP [dm6]	C	A	4.882e^-4	0.969	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9488910	3R_9488910_SNP [dm3] 3R_13663188_SNP [dm6]	T	C	4.883e^-4	0.969	UTR_3_PRIME B52 INTRON B52
3L	3137346	3L_3137346_SNP [dm3] 3L_3137346_SNP [dm6]	G	A	4.885e^-4	0.969	INTRON CG11537
2R	5334995	2R_5334995_SNP [dm3] 2R_9447490_SNP [dm6]	A	C	4.895e^-4	0.969	INTRON Camta	TF binding site mE1_TFBS_HSA
3R	24134626	3R_24134626_DEL [dm3] 3R_28308904_DEL [dm6]	ATTGCGTGTAA...	A	4.905e^-4	0.969	INTERGENIC
3R	10004304	3R_10004304_SNP [dm3] 3R_14178582_SNP [dm6]	A	C	4.906e^-4	0.969	INTRON Dop1R1
2R	13922273	2R_13922273_SNP [dm3] 2R_18034768_SNP [dm6]	A	T	4.914e^-4	0.969	INTERGENIC
2L	15026073	2L_15026073_DEL [dm3] 2L_15026073_DEL [dm6]	AATTATACTACTTAGATACC...	A	4.921e^-4	0.969	UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17044376	3L_17044376_DEL [dm3] 3L_17051276_DEL [dm6]	CC	C	4.921e^-4	0.969	UTR_5_PRIME rogdi INTRON rogdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	11424882	2L_11424882_SNP [dm3] 2L_11424882_SNP [dm6]	C	T	4.925e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7989538	3L_7989538_SNP [dm3] 3L_7996438_SNP [dm6]	A	G	4.930e^-4	0.969	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad
2R	17904125	2R_17904125_SNP [dm3] 2R_22016620_SNP [dm6]	C	T	4.933e^-4	0.969	INTRON CG34370
X	11579050	X_11579050_SNP [dm3] X_11685017_SNP [dm6]	C	T	4.933e^-4	0.969	INTRON bif
3R	12692999	3R_12692999_SNP [dm3] 3R_16867277_SNP [dm6]	A	G	4.943e^-4	0.969	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	12693138	3R_12693138_SNP [dm3] 3R_16867416_SNP [dm6]	C	T	4.943e^-4	0.969	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	12693149	3R_12693149_SNP [dm3] 3R_16867427_SNP [dm6]	G	A	4.943e^-4	0.969	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	12143481	3R_12143481_SNP [dm3] 3R_16317759_SNP [dm6]	G	A	4.951e^-4	0.969	INTRON Sulf1
2L	3445612	2L_3445612_SNP [dm3] 2L_3445612_SNP [dm6]	C	T	4.955e^-4	0.969	UPSTREAM CG2772 INTERGENIC
2R	9303609	2R_9303609_INS [dm3] 2R_13416104_INS [dm6]	G	GTGAAATCCG	4.960e^-4	0.969	INTRON CG42321	TF binding site mE1_TFBS_HSA
2R	18309261	2R_18309261_SNP [dm3] 2R_22421756_SNP [dm6]	C	G	4.962e^-4	0.969	INTRON rad50	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18311000	2R_18311000_SNP [dm3] 2R_22423495_SNP [dm6]	C	A	4.962e^-4	0.969	NON_SYNONYMOUS_CODING rad50
2R	13505694	2R_13505694_SNP [dm3] 2R_17618189_SNP [dm6]	T	C	4.964e^-4	0.969	UPSTREAM CG44403 INTRON CG10936
2L	11425586	2L_11425586_SNP [dm3] 2L_11425586_SNP [dm6]	C	G	4.965e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8171245	2L_8171245_SNP [dm3] 2L_8171245_SNP [dm6]	C	G	4.977e^-4	0.969	INTRON Piezo
2L	8171259	2L_8171259_SNP [dm3] 2L_8171259_SNP [dm6]	A	T	4.977e^-4	0.969	INTRON Piezo
2L	8171260	2L_8171260_SNP [dm3] 2L_8171260_SNP [dm6]	A	G	4.977e^-4	0.969	INTRON Piezo
3L	16453966	3L_16453966_SNP [dm3] 3L_16460866_SNP [dm6]	A	G	4.977e^-4	0.969	INTRON CG33158
3R	9376374	3R_9376374_SNP [dm3] 3R_13550652_SNP [dm6]	A	G	4.980e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12662156	3L_12662156_SNP [dm3] 3L_12669056_SNP [dm6]	A	G	4.994e^-4	0.969	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18018685	X_18018685_SNP [dm3] X_18124652_SNP [dm6]	G	T	5.003e^-4	0.969	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
X	18018686	X_18018686_SNP [dm3] X_18124653_SNP [dm6]	T	A	5.003e^-4	0.969	UTR_3_PRIME CG32553 DOWNSTREAM mir-969
2R	4434893	2R_4434893_SNP [dm3] 2R_8547388_SNP [dm6]	T	C	5.004e^-4	0.969	INTERGENIC
3L	22440307	3L_22440307_SNP [dm3] 3L_22447207_SNP [dm6]	A	T	5.005e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1305402	2L_1305402_SNP [dm3] 2L_1305402_SNP [dm6]	G	C	5.006e^-4	0.969	INTERGENIC
3R	12706456	3R_12706456_SNP [dm3] 3R_16880734_SNP [dm6]	T	A	5.025e^-4	0.969	INTRON iab-8
3L	10088212	3L_10088212_SNP [dm3] 3L_10095112_SNP [dm6]	G	T	5.025e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
3L	11104037	3L_11104037_SNP [dm3] 3L_11110937_SNP [dm6]	C	T	5.027e^-4	0.969	SYNONYMOUS_CODING CG7638	TF binding site mE1_TFBS_sens
X	13686699	X_13686699_SNP [dm3] X_13792666_SNP [dm6]	G	T	5.035e^-4	0.969	INTRON inaE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18392463	3L_18392463_SNP [dm3] 3L_18399363_SNP [dm6]	T	C	5.043e^-4	0.969	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3L	12217464	3L_12217464_SNP [dm3] 3L_12224364_SNP [dm6]	T	C	5.064e^-4	0.969	UPSTREAM app INTRON app	TF binding site mE1_TFBS_inv
3L	10623286	3L_10623286_SNP [dm3] 3L_10630186_SNP [dm6]	A	T	5.069e^-4	0.969	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_run
2R	13355475	2R_13355475_SNP [dm3] 2R_17467970_SNP [dm6]	C	T	5.072e^-4	0.969	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_sens
3L	22122458	3L_22122458_SNP [dm3] 3L_22129358_SNP [dm6]	G	T	5.074e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6672881	2R_6672881_DEL [dm3] 2R_10785376_DEL [dm6]	AA	A	5.075e^-4	0.969	DOWNSTREAM CR44300 & 1 other INTRON CG33144 EXON CR44299
2R	15792574	2R_15792574_DEL [dm3] 2R_19905069_DEL [dm6]	CT	C	5.076e^-4	0.969	INTERGENIC
3R	2855570	3R_2855570_SNP [dm3] 3R_7029848_SNP [dm6]	G	T	5.081e^-4	0.969	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3522722	2L_3522722_SNP [dm3] 2L_3522722_SNP [dm6]	T	C	5.082e^-4	0.969	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2R	17911989	2R_17911989_SNP [dm3] 2R_22024484_SNP [dm6]	T	C	5.086e^-4	0.969	INTRON CG34370
2R	18309532	2R_18309532_SNP [dm3] 2R_22422027_SNP [dm6]	A	G	5.088e^-4	0.969	INTRON rad50	TF binding site mE1_TFBS_sens
2R	5829365	2R_5829365_SNP [dm3] 2R_9941860_SNP [dm6]	C	T	5.100e^-4	0.969	INTRON Mef2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
X	14434922	X_14434922_SNP [dm3] X_14540889_SNP [dm6]	C	G	5.101e^-4	0.969	EXON CR45521
3L	9689522	3L_9689522_SNP [dm3] 3L_9696422_SNP [dm6]	T	G	5.102e^-4	0.969	UPSTREAM CG6767 DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6539131	2R_6539131_SNP [dm3] 2R_10651626_SNP [dm6]	C	T	5.103e^-4	0.969	INTERGENIC
3L	18392005	3L_18392005_SNP [dm3] 3L_18398905_SNP [dm6]	T	A	5.112e^-4	0.969	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	6220444	2R_6220444_SNP [dm3] 2R_10332939_SNP [dm6]	T	A	5.116e^-4	0.969	INTRON CG42732
2R	9914233	2R_9914233_SNP [dm3] 2R_14026728_SNP [dm6]	A	T	5.119e^-4	0.969	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	18312964	2R_18312964_SNP [dm3] 2R_22425459_SNP [dm6]	A	C	5.120e^-4	0.969	UTR_3_PRIME rad50 DOWNSTREAM CG10344	TF binding site mE1_TFBS_cad
2R	18313000	2R_18313000_SNP [dm3] 2R_22425495_SNP [dm6]	C	T	5.120e^-4	0.969	DOWNSTREAM CG10344 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	10088128	3L_10088128_SNP [dm3] 3L_10095028_SNP [dm6]	T	G	5.129e^-4	0.969	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2R	15340802	2R_15340802_SNP [dm3] 2R_19453297_SNP [dm6]	T	G	5.132e^-4	0.969	INTRON CG7744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1831008	2R_1831008_SNP [dm3] 2R_5943503_SNP [dm6]	T	G	5.144e^-4	0.969	INTERGENIC
3R	23247801	3R_23247801_INS [dm3] 3R_27422079_INS [dm6]	T	TT	5.163e^-4	0.969	INTRON side
3R	24171063	3R_24171063_INS [dm3] 3R_28345341_INS [dm6]	T	TTAT	5.164e^-4	0.969	DOWNSTREAM Moca-cyp INTERGENIC
2L	8171241	2L_8171241_SNP [dm3] 2L_8171241_SNP [dm6]	A	G	5.170e^-4	0.969	INTRON Piezo
2R	18028995	2R_18028995_SNP [dm3] 2R_22141490_SNP [dm6]	T	A	5.171e^-4	0.969	DOWNSTREAM gom INTRON a
3L	8400543	3L_8400543_SNP [dm3] 3L_8407443_SNP [dm6]	C	T	5.177e^-4	0.969	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
3R	14731753	3R_14731753_SNP [dm3] 3R_18906031_SNP [dm6]	A	T	5.180e^-4	0.969	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14731757	3R_14731757_SNP [dm3] 3R_18906035_SNP [dm6]	A	C	5.180e^-4	0.969	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16343280	X_16343280_SNP [dm3] X_16449247_SNP [dm6]	A	C	5.180e^-4	0.969	UTR_5_PRIME Rbp2 UPSTREAM CG34015 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2281570	3L_2281570_SNP [dm3] 3L_2281570_SNP [dm6]	G	A	5.188e^-4	0.969	INTERGENIC
3L	12461873	3L_12461873_SNP [dm3] 3L_12468773_SNP [dm6]	T	A	5.206e^-4	0.969	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	17133668	3L_17133668_SNP [dm3] 3L_17140568_SNP [dm6]	C	T	5.210e^-4	0.969	INTRON Rbp6
3L	12689089	3L_12689089_SNP [dm3] 3L_12695989_SNP [dm6]	T	G	5.220e^-4	0.969	INTRON mirr	TF binding site BDTNP1_TFBS_dl
2R	5869776	2R_5869776_SNP [dm3] 2R_9982271_SNP [dm6]	G	A	5.221e^-4	0.969	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13793987	X_13793987_SNP [dm3] X_13899954_SNP [dm6]	C	T	5.222e^-4	0.969	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1886371	2L_1886371_SNP [dm3] 2L_1886371_SNP [dm6]	T	G	5.226e^-4	0.969	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10700990	3L_10700990_SNP [dm3] 3L_10707890_SNP [dm6]	C	A	5.228e^-4	0.969	INTERGENIC
X	20948839	X_20948839_SNP [dm3] X_21077812_SNP [dm6]	C	A	5.235e^-4	0.969	UTR_3_PRIME bves INTRON bves
2R	3279731	2R_3279731_SNP [dm3] 2R_7392226_SNP [dm6]	G	C	5.240e^-4	0.969	NON_SYNONYMOUS_CODING Gr43a
2L	16232469	2L_16232469_DEL [dm3] 2L_16232469_DEL [dm6]	AA	A	5.244e^-4	0.969	INTRON CG42817	TF binding site BDTNP1_TFBS_slp1
3R	23247748	3R_23247748_SNP [dm3] 3R_27422026_SNP [dm6]	G	C	5.249e^-4	0.969	INTRON side
2L	1886276	2L_1886276_SNP [dm3] 2L_1886276_SNP [dm6]	A	C	5.255e^-4	0.969	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6082442	2R_6082442_SNP [dm3] 2R_10194937_SNP [dm6]	G	A	5.256e^-4	0.969	INTERGENIC
2L	1887201	2L_1887201_SNP [dm3] 2L_1887201_SNP [dm6]	A	G	5.256e^-4	0.969	INTRON CG7337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4122888	3L_4122888_SNP [dm3] 3L_4122888_SNP [dm6]	A	G	5.259e^-4	0.969	UPSTREAM Chd64 DOWNSTREAM ens INTERGENIC
2L	7441955	2L_7441955_SNP [dm3] 2L_7441955_SNP [dm6]	T	A	5.260e^-4	0.969	INTRON CG5973
3R	19944450	3R_19944450_SNP [dm3] 3R_24118728_SNP [dm6]	A	T	5.264e^-4	0.969	UTR_5_PRIME Rootletin INTRON Rootletin
2L	14657423	2L_14657423_SNP [dm3] 2L_14657423_SNP [dm6]	C	A	5.265e^-4	0.969	INTRON osp	TF binding site mE1_TFBS_inv
2R	12034476	2R_12034476_SNP [dm3] 2R_16146971_SNP [dm6]	T	A	5.270e^-4	0.969	SYNONYMOUS_CODING Ext2

By genomic position
Variant impact
Gene name

mn_MortalityInd phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results