DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.370e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.002656
In_3R_K	0.003944

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	9.3931	0.0091
In_3R_K	4.7629	0.0924
In_3R_Mo	5.6054	0.0606

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2167 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19602031	3R_19602031_SNP [dm3] 3R_23776309_SNP [dm6]	C	T	2.421e^-7	0.454	NON_SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA
3L	1199369	3L_1199369_INS [dm3] 3L_1199369_INS [dm6]	G	GTGAGAAAGGTGAGC...	2.097e^-6	0.835	DOWNSTREAM Aplip1 INTERGENIC
2R	2094018	2R_2094018_SNP [dm3] 2R_6206513_SNP [dm6]	T	C	2.264e^-6	0.835	DOWNSTREAM CG17994 INTERGENIC
3R	15982108	3R_15982108_SNP [dm3] 3R_20156386_SNP [dm6]	C	A	3.157e^-6	0.835	INTERGENIC
2R	18464748	2R_18464748_SNP [dm3] 2R_22577243_SNP [dm6]	C	T	4.060e^-6	0.835	INTRON dnr1
3R	21465759	3R_21465759_SNP [dm3] 3R_25640037_SNP [dm6]	T	A	4.568e^-6	0.835	INTRON jigr1
3L	1199407	3L_1199407_INS [dm3] 3L_1199407_INS [dm6]	C	CTTTCGAAAAATGTTGGTAT...	4.888e^-6	0.835	DOWNSTREAM Aplip1 INTERGENIC
2L	15748807	2L_15748807_SNP [dm3] 2L_15748807_SNP [dm6]	A	C	5.367e^-6	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3919520	3L_3919520_SNP [dm3] 3L_3919520_SNP [dm6]	C	T	5.613e^-6	0.835	INTRON Eip63F-1
2L	4010822	2L_4010822_DEL [dm3] 2L_4010822_DEL [dm6]	TT	T	5.631e^-6	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16749545	3R_16749545_SNP [dm3] 3R_20923823_SNP [dm6]	A	G	6.230e^-6	0.835	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
3L	1199403	3L_1199403_DEL [dm3] 3L_1199403_DEL [dm6]	AG	A	6.343e^-6	0.835	DOWNSTREAM Aplip1 INTERGENIC
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	7.882e^-6	0.835	INTRON jigr1
2L	20297357	2L_20297357_INS [dm3] 2L_20297357_INS [dm6]	A	AAAGAAACATTAAACA...	7.898e^-6	0.835	UPSTREAM CR43414 INTERGENIC
2R	15830158	2R_15830158_INS [dm3] 2R_19942653_INS [dm6]	T	TTTA	8.168e^-6	0.835	INTERGENIC
3R	10206259	3R_10206259_SNP [dm3] 3R_14380537_SNP [dm6]	G	C	8.640e^-6	0.835	DOWNSTREAM soti INTERGENIC
2L	4011004	2L_4011004_DEL [dm3] 2L_4011004_DEL [dm6]	AA	A	9.445e^-6	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10666396	3L_10666396_SNP [dm3] 3L_10673296_SNP [dm6]	T	G	9.801e^-6	0.835	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2859594	3L_2859594_SNP [dm3] 3L_2859594_SNP [dm6]	G	T	9.919e^-6	0.835	INTRON CG43444
X	18287360	X_18287360_SNP [dm3] X_18393327_SNP [dm6]	T	C	1.040e^-5	0.835	INTRON CG32549
2L	20297320	2L_20297320_DEL [dm3] 2L_20297320_DEL [dm6]	TTGACACC	T	1.122e^-5	0.835	UPSTREAM CR43414 INTERGENIC
3R	26020341	3R_26020341_SNP [dm3] 3R_30194619_SNP [dm6]	C	G	1.184e^-5	0.835	DOWNSTREAM CG15531 INTERGENIC
3R	19558992	3R_19558992_SNP [dm3] 3R_23733270_SNP [dm6]	G	A	1.220e^-5	0.835	START_GAINED Rpn9 UTR_5_PRIME Rpn9 UPSTREAM Hmgcr & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20013523	3R_20013523_SNP [dm3] 3R_24187801_SNP [dm6]	G	A	1.463e^-5	0.835	UTR_3_PRIME CG5515 DOWNSTREAM CHORD	TF binding site mE1_TFBS_sens
2L	11469356	2L_11469356_SNP [dm3] 2L_11469356_SNP [dm6]	C	T	1.511e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10288421	3R_10288421_SNP [dm3] 3R_14462699_SNP [dm6]	A	G	1.530e^-5	0.835	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7100304	X_7100304_SNP [dm3] X_7206271_SNP [dm6]	A	G	1.609e^-5	0.835	INTRON CR44357 & 1 other
3R	16750862	3R_16750862_SNP [dm3] 3R_20925140_SNP [dm6]	A	G	1.620e^-5	0.835	INTRON CG31191 & 1 other
2L	3870608	2L_3870608_SNP [dm3] 2L_3870608_SNP [dm6]	G	A	1.676e^-5	0.835	DOWNSTREAM CG31957 INTRON Cep97	TF binding site mE1_TFBS_sens
3L	3857133	3L_3857133_SNP [dm3] 3L_3857133_SNP [dm6]	C	T	1.733e^-5	0.835	INTRON Awh
3L	3857136	3L_3857136_SNP [dm3] 3L_3857136_SNP [dm6]	G	A	1.759e^-5	0.835	INTRON Awh
2R	17071497	2R_17071497_SNP [dm3] 2R_21183992_SNP [dm6]	T	A	1.763e^-5	0.835	INTRON tud	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15771544	2L_15771544_SNP [dm3] 2L_15771544_SNP [dm6]	G	C	1.765e^-5	0.835	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	10666425	3L_10666425_SNP [dm3] 3L_10673325_SNP [dm6]	A	G	1.779e^-5	0.835	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7102590	X_7102590_SNP [dm3] X_7208557_SNP [dm6]	A	G	1.786e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	15757462	2L_15757462_SNP [dm3] 2L_15757462_SNP [dm6]	G	A	1.829e^-5	0.835	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21548582	3R_21548582_SNP [dm3] 3R_25722860_SNP [dm6]	A	G	1.901e^-5	0.835	INTRON LpR2
2L	4010981	2L_4010981_DEL [dm3] 2L_4010981_DEL [dm6]	CAC	A	1.932e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15771568	2L_15771568_SNP [dm3] 2L_15771568_SNP [dm6]	T	G	1.983e^-5	0.835	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
3L	3918643	3L_3918643_SNP [dm3] 3L_3918643_SNP [dm6]	A	G	2.101e^-5	0.835	INTRON Eip63F-1
X	12285416	X_12285416_SNP [dm3] X_12391383_SNP [dm6]	A	T	2.110e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20297484	2L_20297484_SNP [dm3] 2L_20297484_SNP [dm6]	A	T	2.315e^-5	0.835	UPSTREAM CR43414 INTERGENIC
3L	5728280	3L_5728280_DEL [dm3] 3L_5735180_DEL [dm6]	CTGGTTTTCG	C	2.413e^-5	0.835	INTRON sif
2L	2923818	2L_2923818_SNP [dm3] 2L_2923818_SNP [dm6]	C	T	2.508e^-5	0.835	INTRON lilli
2L	4170174	2L_4170174_SNP [dm3] 2L_4170174_SNP [dm6]	C	T	2.555e^-5	0.835	INTERGENIC
2R	16274982	2R_16274982_SNP [dm3] 2R_20387477_SNP [dm6]	C	G	2.768e^-5	0.835	INTERGENIC
3L	3857091	3L_3857091_SNP [dm3] 3L_3857091_SNP [dm6]	G	C	2.844e^-5	0.835	INTRON Awh
X	7102363	X_7102363_SNP [dm3] X_7208330_SNP [dm6]	C	G	2.970e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	6715342	2L_6715342_SNP [dm3] 2L_6715342_SNP [dm6]	T	C	2.978e^-5	0.835	INTRON AkhR
2L	17034800	2L_17034800_SNP [dm3] 2L_17034800_SNP [dm6]	T	A	2.983e^-5	0.835	INTERGENIC
2R	18369417	2R_18369417_SNP [dm3] 2R_22481912_SNP [dm6]	G	A	3.006e^-5	0.835	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16620567	2L_16620567_SNP [dm3] 2L_16620567_SNP [dm6]	A	G	3.042e^-5	0.835	INTRON CG42389
2L	10307866	2L_10307866_SNP [dm3] 2L_10307866_SNP [dm6]	T	A	3.062e^-5	0.835	SYNONYMOUS_CODING CG4968 DOWNSTREAM Cdk5alpha
3L	3279578	3L_3279578_SNP [dm3] 3L_3279578_SNP [dm6]	A	G	3.149e^-5	0.835	UPSTREAM CG12017 INTERGENIC
3L	8251814	3L_8251814_SNP [dm3] 3L_8258714_SNP [dm6]	G	A	3.334e^-5	0.835	INTRON Dscam4
3L	3549992	3L_3549992_SNP [dm3] 3L_3549992_SNP [dm6]	T	G	3.342e^-5	0.835	INTRON Eip63E
2R	4943185	2R_4943185_SNP [dm3] 2R_9055680_SNP [dm6]	C	G	3.369e^-5	0.835	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15748384	2L_15748384_INS [dm3] 2L_15748384_INS [dm6]	A	ATAA	3.372e^-5	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6610686	3L_6610686_SNP [dm3] 3L_6617586_SNP [dm6]	G	T	3.477e^-5	0.835	INTRON CG8398
2L	10679205	2L_10679205_SNP [dm3] 2L_10679205_SNP [dm6]	T	C	3.490e^-5	0.835	SYNONYMOUS_CODING CG17104 DOWNSTREAM CR44180
2R	11741837	2R_11741837_SNP [dm3] 2R_15854332_SNP [dm6]	C	T	3.503e^-5	0.835	UTR_3_PRIME tun DOWNSTREAM tun
3R	16750446	3R_16750446_SNP [dm3] 3R_20924724_SNP [dm6]	T	C	3.525e^-5	0.835	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
2L	1277439	2L_1277439_SNP [dm3] 2L_1277439_SNP [dm6]	A	G	3.529e^-5	0.835	INTRON robo3
3R	26766613	3R_26766613_SNP [dm3] 3R_30940891_SNP [dm6]	C	T	3.574e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12136333	2L_12136333_INS [dm3] 2L_12136333_INS [dm6]	T	TTTGTAAGT	3.577e^-5	0.835	INTERGENIC
3R	20830577	3R_20830577_SNP [dm3] 3R_25004855_SNP [dm6]	A	T	3.586e^-5	0.835	INTRON tnc
2L	20297257	2L_20297257_SNP [dm3] 2L_20297257_SNP [dm6]	G	C	3.689e^-5	0.835	EXON CR43414
3L	8850809	3L_8850809_SNP [dm3] 3L_8857709_SNP [dm6]	G	T	3.777e^-5	0.835	INTRON dally
2L	16051181	2L_16051181_SNP [dm3] 2L_16051181_SNP [dm6]	A	T	3.790e^-5	0.835	INTRON beat-Ia	TF binding site mE1_TFBS_cad
2L	13682311	2L_13682311_SNP [dm3] 2L_13682311_SNP [dm6]	T	C	3.813e^-5	0.835	INTRON CG31814
2L	16620673	2L_16620673_SNP [dm3] 2L_16620673_SNP [dm6]	G	T	3.869e^-5	0.835	INTRON CG42389
3L	3518870	3L_3518870_SNP [dm3] 3L_3518870_SNP [dm6]	G	A	3.916e^-5	0.835	INTRON Eip63E
2L	18583948	2L_18583948_SNP [dm3] 2L_18583948_SNP [dm6]	G	C	3.972e^-5	0.835	INTRON Pde11	transposable element FlyBase
3L	1249364	3L_1249364_SNP [dm3] 3L_1249364_SNP [dm6]	C	G	4.034e^-5	0.835	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5231182	2R_5231182_SNP [dm3] 2R_9343677_SNP [dm6]	G	A	4.111e^-5	0.835	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_inv
3L	9777742	3L_9777742_SNP [dm3] 3L_9784642_SNP [dm6]	T	G	4.371e^-5	0.835	INTRON CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2123236	3L_2123236_SNP [dm3] 3L_2123236_SNP [dm6]	G	T	4.439e^-5	0.835	INTRON zormin
3L	9700402	3L_9700402_SNP [dm3] 3L_9707302_SNP [dm6]	T	G	4.459e^-5	0.835	NON_SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19876871	2L_19876871_SNP [dm3] 2L_19876871_SNP [dm6]	C	T	4.476e^-5	0.835	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3919516	3L_3919516_SNP [dm3] 3L_3919516_SNP [dm6]	T	G	4.525e^-5	0.835	INTRON Eip63F-1
2R	3772050	2R_3772050_SNP [dm3] 2R_7884545_SNP [dm6]	G	A	4.597e^-5	0.835	INTRON Dgk
2R	15152946	2R_15152946_SNP [dm3] 2R_19265441_SNP [dm6]	G	C	4.614e^-5	0.835	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	10982377	3R_10982377_DEL [dm3] 3R_15156655_DEL [dm6]	GTGAAAAGTGAAAACTTCTG...	G	4.768e^-5	0.835	INTRON Gyc88E
2L	16620588	2L_16620588_SNP [dm3] 2L_16620588_SNP [dm6]	C	T	4.785e^-5	0.835	INTRON CG42389
2L	15999380	2L_15999380_SNP [dm3] 2L_15999380_SNP [dm6]	A	T	4.799e^-5	0.835	UPSTREAM beat-Ic INTERGENIC
3L	3785856	3L_3785856_SNP [dm3] 3L_3785856_SNP [dm6]	G	T	4.808e^-5	0.835	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	7100166	X_7100166_DEL [dm3] X_7206133_DEL [dm6]	CC	C	4.812e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA
X	7102667	X_7102667_SNP [dm3] X_7208634_SNP [dm6]	T	C	4.830e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	15771536	2L_15771536_SNP [dm3] 2L_15771536_SNP [dm6]	T	A	4.885e^-5	0.835	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	9205123	X_9205123_SNP [dm3] X_9311090_SNP [dm6]	T	G	4.913e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17626946	X_17626946_SNP [dm3] X_17732913_SNP [dm6]	T	C	4.940e^-5	0.835	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20470499	X_20470499_SNP [dm3] X_20599472_SNP [dm6]	C	T	5.005e^-5	0.835	INTRON RunxA
2L	2914838	2L_2914838_SNP [dm3] 2L_2914838_SNP [dm6]	G	C	5.039e^-5	0.835	INTRON lilli
X	19254183	X_19254183_SNP [dm3] X_19360150_SNP [dm6]	T	A	5.045e^-5	0.835	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10287381	3R_10287381_SNP [dm3] 3R_14461659_SNP [dm6]	G	T	5.060e^-5	0.835	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	13182505	3L_13182505_SNP [dm3] 3L_13189405_SNP [dm6]	A	C	5.111e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3889503	3L_3889503_SNP [dm3] 3L_3889503_SNP [dm6]	C	T	5.228e^-5	0.835	INTERGENIC
2L	15803532	2L_15803532_SNP [dm3] 2L_15803532_SNP [dm6]	C	T	5.236e^-5	0.835	INTERGENIC
2L	17538006	2L_17538006_SNP [dm3] 2L_17538006_SNP [dm6]	C	T	5.300e^-5	0.835	INTERGENIC
3R	9548286	3R_9548286_DEL [dm3] 3R_13722564_DEL [dm6]	GG	G	5.372e^-5	0.835	INTRON CG34383

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.479e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004846
In_3R_K	0.028305

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.5455	0.0139
In_3R_K	5.3753	0.068

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1855 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19512431	X_19512431_SNP [dm3] X_19618398_SNP [dm6]	T	C	2.839e^-7	0.367	DOWNSTREAM CG14221 INTRON CG12788 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19511236	X_19511236_SNP [dm3] X_19617203_SNP [dm6]	A	T	8.378e^-7	0.367	NON_SYNONYMOUS_CODING CG12788 UTR_3_PRIME Tim9b DOWNSTREAM CG14210	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13870328	2L_13870328_SNP [dm3] 2L_13870328_SNP [dm6]	A	G	9.186e^-7	0.367	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	19512499	X_19512499_SNP [dm3] X_19618466_SNP [dm6]	A	G	9.985e^-7	0.367	START_GAINED CG12788 & 1 other UTR_5_PRIME CG12788 & 1 other DOWNSTREAM CG14221	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15771568	2L_15771568_SNP [dm3] 2L_15771568_SNP [dm6]	T	G	1.108e^-6	0.367	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
3L	5274160	3L_5274160_SNP [dm3] 3L_5281060_SNP [dm6]	G	T	1.248e^-6	0.367	INTERGENIC
2R	3574351	2R_3574351_SNP [dm3] 2R_7686846_SNP [dm6]	G	A	1.371e^-6	0.367	INTRON CG1399
X	19512657	X_19512657_SNP [dm3] X_19618624_SNP [dm6]	T	G	2.001e^-6	0.469	UPSTREAM Tim9b & 1 other DOWNSTREAM CG14221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15771544	2L_15771544_SNP [dm3] 2L_15771544_SNP [dm6]	G	C	2.727e^-6	0.545	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	8524536	2L_8524536_SNP [dm3] 2L_8524536_SNP [dm6]	A	C	2.952e^-6	0.545	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18445238	2R_18445238_DEL [dm3] 2R_22557733_DEL [dm6]	ATA	A	3.304e^-6	0.545	INTRON px
2L	15771536	2L_15771536_SNP [dm3] 2L_15771536_SNP [dm6]	T	A	3.759e^-6	0.545	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	18391373	2R_18391373_SNP [dm3] 2R_22503868_SNP [dm6]	A	T	3.775e^-6	0.545	INTRON px
3R	10686201	3R_10686201_INS [dm3] 3R_14860479_INS [dm6]	C	CTG	4.784e^-6	0.641	INTRON btsz
X	19512632	X_19512632_SNP [dm3] X_19618599_SNP [dm6]	A	T	5.405e^-6	0.676	UPSTREAM Tim9b & 1 other DOWNSTREAM CG14221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10486518	2L_10486518_SNP [dm3] 2L_10486518_SNP [dm6]	C	T	6.019e^-6	0.702	SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23231713	3R_23231713_SNP [dm3] 3R_27405991_SNP [dm6]	C	T	6.532e^-6	0.702	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7068572	2L_7068572_SNP [dm3] 2L_7068572_SNP [dm6]	G	C	6.741e^-6	0.702	NON_SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11061038	2L_11061038_DEL [dm3] 2L_11061038_DEL [dm6]	ATCA	A	7.932e^-6	0.762	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	8740982	X_8740982_SNP [dm3] X_8846949_SNP [dm6]	A	T	8.639e^-6	0.762	INTRON CG12075
2L	10485654	2L_10485654_SNP [dm3] 2L_10485654_SNP [dm6]	T	C	8.874e^-6	0.762	SYNONYMOUS_CODING Grip75 UTR_3_PRIME CG7456
2R	18391363	2R_18391363_MNP [dm3] 2R_22503858_MNP [dm6]	GAA	TTT	9.343e^-6	0.762	INTRON px
3R	13970131	3R_13970131_SNP [dm3] 3R_18144409_SNP [dm6]	T	A	9.347e^-6	0.762	INTERGENIC
2L	15771836	2L_15771836_SNP [dm3] 2L_15771836_SNP [dm6]	A	C	1.001e^-5	0.782	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
2L	15755675	2L_15755675_SNP [dm3] 2L_15755675_SNP [dm6]	T	C	1.162e^-5	0.872	UTR_3_PRIME l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3L	9159906	3L_9159906_SNP [dm3] 3L_9166806_SNP [dm6]	G	T	1.274e^-5	0.919	INTRON Rdl
3R	16441782	3R_16441782_INS [dm3] 3R_20616060_INS [dm6]	T	TTTTAGTTTT	1.531e^-5	0.961	INTRON CG15923
3R	20830577	3R_20830577_SNP [dm3] 3R_25004855_SNP [dm6]	A	T	1.537e^-5	0.961	INTRON tnc
X	9042443	X_9042443_SNP [dm3] X_9148410_SNP [dm6]	T	C	1.580e^-5	0.961	NON_SYNONYMOUS_CODING fh SYNONYMOUS_CODING fh UPSTREAM dalao DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11227251	3L_11227251_INS [dm3] 3L_11234151_INS [dm6]	G	GG	1.602e^-5	0.961	INTRON Ir68a
2L	8283159	2L_8283159_SNP [dm3] 2L_8283159_SNP [dm6]	G	A	1.642e^-5	0.961	INTRON Btk29A
2L	15455077	2L_15455077_SNP [dm3] 2L_15455077_SNP [dm6]	T	C	1.680e^-5	0.961	INTERGENIC
2R	16414343	2R_16414343_SNP [dm3] 2R_20526838_SNP [dm6]	C	A	1.690e^-5	0.961	DOWNSTREAM CG13422 INTERGENIC
3L	8042634	3L_8042634_INS [dm3] 3L_8049534_INS [dm6]	T	TATT	1.829e^-5	0.963	INTRON nmo	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	3345137	2L_3345137_SNP [dm3] 2L_3345137_SNP [dm6]	A	T	1.888e^-5	0.963	INTRON E23
2R	1381336	2R_1381336_SNP [dm3] 2R_5493831_SNP [dm6]	G	A	1.893e^-5	0.963	INTRON CG30440
2L	12136404	2L_12136404_SNP [dm3] 2L_12136404_SNP [dm6]	T	C	1.905e^-5	0.963	INTERGENIC
3L	13604023	3L_13604023_SNP [dm3] 3L_13610923_SNP [dm6]	T	C	2.014e^-5	0.963	INTRON bru-3
2L	3348940	2L_3348940_SNP [dm3] 2L_3348940_SNP [dm6]	A	G	2.024e^-5	0.963	INTRON E23
3L	16726561	3L_16726561_SNP [dm3] 3L_16733461_SNP [dm6]	G	A	2.083e^-5	0.963	UPSTREAM CG9701 INTERGENIC
3R	24049886	3R_24049886_SNP [dm3] 3R_28224164_SNP [dm6]	G	A	2.134e^-5	0.963	INTRON CG34354
3L	2182595	3L_2182595_DEL [dm3] 3L_2182595_DEL [dm6]	CTTTTTA	C	2.163e^-5	0.963	INTERGENIC
3R	14029203	3R_14029203_SNP [dm3] 3R_18203481_SNP [dm6]	C	G	2.241e^-5	0.963	INTRON CG7985
3R	17754783	3R_17754783_SNP [dm3] 3R_21929061_SNP [dm6]	C	G	2.268e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	3764780	3L_3764780_SNP [dm3] 3L_3764780_SNP [dm6]	A	G	2.408e^-5	0.963	INTRON CG32264
3R	14888374	3R_14888374_SNP [dm3] 3R_19062652_SNP [dm6]	G	T	2.424e^-5	0.963	INTRON cdi
3R	16761953	3R_16761953_SNP [dm3] 3R_20936231_SNP [dm6]	A	G	2.653e^-5	0.963	INTRON CG31191
2L	13870199	2L_13870199_SNP [dm3] 2L_13870199_SNP [dm6]	A	G	2.712e^-5	0.963	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8875448	2R_8875448_SNP [dm3] 2R_12987943_SNP [dm6]	C	T	2.776e^-5	0.963	INTERGENIC
2L	12136200	2L_12136200_SNP [dm3] 2L_12136200_SNP [dm6]	G	A	3.010e^-5	0.963	INTERGENIC
3L	2123236	3L_2123236_SNP [dm3] 3L_2123236_SNP [dm6]	G	T	3.135e^-5	0.963	INTRON zormin
X	5275854	X_5275854_SNP [dm3] X_5381821_SNP [dm6]	G	A	3.207e^-5	0.963	INTRON SK
X	3184157	X_3184157_SNP [dm3] X_3290124_SNP [dm6]	A	C	3.234e^-5	0.963	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc
2R	16414339	2R_16414339_SNP [dm3] 2R_20526834_SNP [dm6]	C	A	3.286e^-5	0.963	DOWNSTREAM CG13422 INTERGENIC
2R	11045775	2R_11045775_SNP [dm3] 2R_15158270_SNP [dm6]	A	C	3.566e^-5	0.963	DOWNSTREAM CR43831 INTRON igl
2R	18391332	2R_18391332_DEL [dm3] 2R_22503827_DEL [dm6]	TTTCTAG	T	3.619e^-5	0.963	INTRON px
2L	15748943	2L_15748943_SNP [dm3] 2L_15748943_SNP [dm6]	C	G	3.979e^-5	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	7017289	2L_7017289_SNP [dm3] 2L_7017289_SNP [dm6]	A	T	4.096e^-5	0.963	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17444643	2L_17444643_SNP [dm3] 2L_17444643_SNP [dm6]	A	G	4.252e^-5	0.963	INTRON dl
2R	2479146	2R_2479146_SNP [dm3] 2R_6591641_SNP [dm6]	A	T	4.304e^-5	0.963	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15152946	2R_15152946_SNP [dm3] 2R_19265441_SNP [dm6]	G	C	4.322e^-5	0.963	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	13870198	2L_13870198_SNP [dm3] 2L_13870198_SNP [dm6]	G	T	4.332e^-5	0.963	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14341731	2R_14341731_SNP [dm3] 2R_18454226_SNP [dm6]	T	C	4.384e^-5	0.963	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
X	18380555	X_18380555_SNP [dm3] X_18486522_SNP [dm6]	C	T	4.404e^-5	0.963	DOWNSTREAM CG15046 INTRON psh
3L	8066656	3L_8066656_SNP [dm3] 3L_8073556_SNP [dm6]	A	G	4.414e^-5	0.963	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
2L	15757462	2L_15757462_SNP [dm3] 2L_15757462_SNP [dm6]	G	A	4.421e^-5	0.963	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15748948	2L_15748948_SNP [dm3] 2L_15748948_SNP [dm6]	G	T	4.538e^-5	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3R	10032704	3R_10032704_SNP [dm3] 3R_14206982_SNP [dm6]	T	C	4.666e^-5	0.963	INTRON Dop1R1
2L	4010822	2L_4010822_DEL [dm3] 2L_4010822_DEL [dm6]	TT	T	4.731e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18380564	X_18380564_SNP [dm3] X_18486531_SNP [dm6]	T	C	4.757e^-5	0.963	DOWNSTREAM CG15046 INTRON psh
2R	8641382	2R_8641382_SNP [dm3] 2R_12753877_SNP [dm6]	T	A	4.794e^-5	0.963	UPSTREAM mos INTRON Taz	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	3764759	3L_3764759_SNP [dm3] 3L_3764759_SNP [dm6]	C	T	4.807e^-5	0.963	INTRON CG32264
2L	15761019	2L_15761019_SNP [dm3] 2L_15761019_SNP [dm6]	T	C	4.808e^-5	0.963	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13095108	3R_13095108_SNP [dm3] 3R_17269386_SNP [dm6]	T	A	4.876e^-5	0.963	DOWNSTREAM CR44258 INTERGENIC
2R	14278384	2R_14278384_SNP [dm3] 2R_18390879_SNP [dm6]	T	C	4.885e^-5	0.963	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	4.971e^-5	0.963	INTERGENIC
2R	18335199	2R_18335199_SNP [dm3] 2R_22447694_SNP [dm6]	C	T	5.021e^-5	0.963	INTERGENIC
2L	10982754	2L_10982754_SNP [dm3] 2L_10982754_SNP [dm6]	T	G	5.062e^-5	0.963	SYNONYMOUS_CODING piwi DOWNSTREAM SCAR
3R	10689487	3R_10689487_SNP [dm3] 3R_14863765_SNP [dm6]	A	G	5.097e^-5	0.963	INTRON btsz
2L	520004	2L_520004_SNP [dm3] 2L_520004_SNP [dm6]	T	C	5.124e^-5	0.963	INTRON ush	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16414333	2R_16414333_SNP [dm3] 2R_20526828_SNP [dm6]	C	A	5.142e^-5	0.963	DOWNSTREAM CG13422 INTERGENIC
3R	1946747	3R_1946747_SNP [dm3] 3R_6121025_SNP [dm6]	T	C	5.339e^-5	0.963	INTERGENIC
3R	13970249	3R_13970249_SNP [dm3] 3R_18144527_SNP [dm6]	C	G	5.500e^-5	0.963	INTERGENIC
3L	9724422	3L_9724422_SNP [dm3] 3L_9731322_SNP [dm6]	C	A	5.516e^-5	0.963	UTR_3_PRIME CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14341728	2R_14341728_SNP [dm3] 2R_18454223_SNP [dm6]	C	A	5.563e^-5	0.963	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
2L	11865973	2L_11865973_SNP [dm3] 2L_11865973_SNP [dm6]	T	G	5.565e^-5	0.963	INTRON Pde1c
2R	17531966	2R_17531966_SNP [dm3] 2R_21644461_SNP [dm6]	C	A	5.660e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1298917	2R_1298917_DEL [dm3] 2R_5411412_DEL [dm6]	TGGCAATAACT...	T	5.661e^-5	0.963	INTERGENIC	transposable element FlyBase
3R	16931267	3R_16931267_SNP [dm3] 3R_21105545_SNP [dm6]	A	G	5.690e^-5	0.963	SYNONYMOUS_CODING Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad
X	10497294	X_10497294_SNP [dm3] X_10603261_SNP [dm6]	C	A	5.747e^-5	0.963	UTR_3_PRIME CG43347 UPSTREAM CG1628 DOWNSTREAM CG43347	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4178492	3R_4178492_SNP [dm3] 3R_8352770_SNP [dm6]	A	G	5.757e^-5	0.963	UTR_3_PRIME Atg13
3R	26106219	3R_26106219_SNP [dm3] 3R_30280497_SNP [dm6]	G	A	5.757e^-5	0.963	INTRON hdc
2R	5665724	2R_5665724_SNP [dm3] 2R_9778219_SNP [dm6]	G	T	5.780e^-5	0.963	INTRON CG1688
3L	9872333	3L_9872333_SNP [dm3] 3L_9879233_SNP [dm6]	A	G	5.781e^-5	0.963	UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
3L	9872339	3L_9872339_SNP [dm3] 3L_9879239_SNP [dm6]	C	T	5.781e^-5	0.963	START_GAINED CG34382 UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
3L	5278128	3L_5278128_SNP [dm3] 3L_5285028_SNP [dm6]	A	T	5.798e^-5	0.963	INTERGENIC
X	16902175	X_16902175_SNP [dm3] X_17008142_SNP [dm6]	C	T	5.920e^-5	0.963	INTRON CG45002
3L	3862555	3L_3862555_SNP [dm3] 3L_3862555_SNP [dm6]	A	G	6.001e^-5	0.963	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	5665740	2R_5665740_SNP [dm3] 2R_9778235_SNP [dm6]	C	T	6.091e^-5	0.963	INTRON CG1688
2L	15748807	2L_15748807_SNP [dm3] 2L_15748807_SNP [dm6]	A	C	6.110e^-5	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl

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By genomic position
Variant impact
Gene name

mn_NegGeotaxis_MSB phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results