DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.370e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.002656
In_3R_K	0.003944

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	9.3931	0.0091
In_3R_K	4.7629	0.0924
In_3R_Mo	5.6054	0.0606

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2167 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19602031	3R_19602031_SNP [dm3] 3R_23776309_SNP [dm6]	C	T	2.421e^-7	0.454	NON_SYNONYMOUS_CODING Nup98-96 DOWNSTREAM Nup98-96	TF binding site mE1_TFBS_HSA
3L	1199369	3L_1199369_INS [dm3] 3L_1199369_INS [dm6]	G	GTGAGAAAGGTGAGC...	2.097e^-6	0.835	DOWNSTREAM Aplip1 INTERGENIC
2R	2094018	2R_2094018_SNP [dm3] 2R_6206513_SNP [dm6]	T	C	2.264e^-6	0.835	DOWNSTREAM CG17994 INTERGENIC
3R	15982108	3R_15982108_SNP [dm3] 3R_20156386_SNP [dm6]	C	A	3.157e^-6	0.835	INTERGENIC
2R	18464748	2R_18464748_SNP [dm3] 2R_22577243_SNP [dm6]	C	T	4.060e^-6	0.835	INTRON dnr1
3R	21465759	3R_21465759_SNP [dm3] 3R_25640037_SNP [dm6]	T	A	4.568e^-6	0.835	INTRON jigr1
3L	1199407	3L_1199407_INS [dm3] 3L_1199407_INS [dm6]	C	CTTTCGAAAAATGTTGGTAT...	4.888e^-6	0.835	DOWNSTREAM Aplip1 INTERGENIC
2L	15748807	2L_15748807_SNP [dm3] 2L_15748807_SNP [dm6]	A	C	5.367e^-6	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3919520	3L_3919520_SNP [dm3] 3L_3919520_SNP [dm6]	C	T	5.613e^-6	0.835	INTRON Eip63F-1
2L	4010822	2L_4010822_DEL [dm3] 2L_4010822_DEL [dm6]	TT	T	5.631e^-6	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16749545	3R_16749545_SNP [dm3] 3R_20923823_SNP [dm6]	A	G	6.230e^-6	0.835	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
3L	1199403	3L_1199403_DEL [dm3] 3L_1199403_DEL [dm6]	AG	A	6.343e^-6	0.835	DOWNSTREAM Aplip1 INTERGENIC
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	7.882e^-6	0.835	INTRON jigr1
2L	20297357	2L_20297357_INS [dm3] 2L_20297357_INS [dm6]	A	AAAGAAACATTAAACA...	7.898e^-6	0.835	UPSTREAM CR43414 INTERGENIC
2R	15830158	2R_15830158_INS [dm3] 2R_19942653_INS [dm6]	T	TTTA	8.168e^-6	0.835	INTERGENIC
3R	10206259	3R_10206259_SNP [dm3] 3R_14380537_SNP [dm6]	G	C	8.640e^-6	0.835	DOWNSTREAM soti INTERGENIC
2L	4011004	2L_4011004_DEL [dm3] 2L_4011004_DEL [dm6]	AA	A	9.445e^-6	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10666396	3L_10666396_SNP [dm3] 3L_10673296_SNP [dm6]	T	G	9.801e^-6	0.835	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2859594	3L_2859594_SNP [dm3] 3L_2859594_SNP [dm6]	G	T	9.919e^-6	0.835	INTRON CG43444
X	18287360	X_18287360_SNP [dm3] X_18393327_SNP [dm6]	T	C	1.040e^-5	0.835	INTRON CG32549
2L	20297320	2L_20297320_DEL [dm3] 2L_20297320_DEL [dm6]	TTGACACC	T	1.122e^-5	0.835	UPSTREAM CR43414 INTERGENIC
3R	26020341	3R_26020341_SNP [dm3] 3R_30194619_SNP [dm6]	C	G	1.184e^-5	0.835	DOWNSTREAM CG15531 INTERGENIC
3R	19558992	3R_19558992_SNP [dm3] 3R_23733270_SNP [dm6]	G	A	1.220e^-5	0.835	START_GAINED Rpn9 UTR_5_PRIME Rpn9 UPSTREAM Hmgcr & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20013523	3R_20013523_SNP [dm3] 3R_24187801_SNP [dm6]	G	A	1.463e^-5	0.835	UTR_3_PRIME CG5515 DOWNSTREAM CHORD	TF binding site mE1_TFBS_sens
2L	11469356	2L_11469356_SNP [dm3] 2L_11469356_SNP [dm6]	C	T	1.511e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10288421	3R_10288421_SNP [dm3] 3R_14462699_SNP [dm6]	A	G	1.530e^-5	0.835	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7100304	X_7100304_SNP [dm3] X_7206271_SNP [dm6]	A	G	1.609e^-5	0.835	INTRON CR44357 & 1 other
3R	16750862	3R_16750862_SNP [dm3] 3R_20925140_SNP [dm6]	A	G	1.620e^-5	0.835	INTRON CG31191 & 1 other
2L	3870608	2L_3870608_SNP [dm3] 2L_3870608_SNP [dm6]	G	A	1.676e^-5	0.835	DOWNSTREAM CG31957 INTRON Cep97	TF binding site mE1_TFBS_sens
3L	3857133	3L_3857133_SNP [dm3] 3L_3857133_SNP [dm6]	C	T	1.733e^-5	0.835	INTRON Awh
3L	3857136	3L_3857136_SNP [dm3] 3L_3857136_SNP [dm6]	G	A	1.759e^-5	0.835	INTRON Awh
2R	17071497	2R_17071497_SNP [dm3] 2R_21183992_SNP [dm6]	T	A	1.763e^-5	0.835	INTRON tud	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15771544	2L_15771544_SNP [dm3] 2L_15771544_SNP [dm6]	G	C	1.765e^-5	0.835	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	10666425	3L_10666425_SNP [dm3] 3L_10673325_SNP [dm6]	A	G	1.779e^-5	0.835	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7102590	X_7102590_SNP [dm3] X_7208557_SNP [dm6]	A	G	1.786e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	15757462	2L_15757462_SNP [dm3] 2L_15757462_SNP [dm6]	G	A	1.829e^-5	0.835	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21548582	3R_21548582_SNP [dm3] 3R_25722860_SNP [dm6]	A	G	1.901e^-5	0.835	INTRON LpR2
2L	4010981	2L_4010981_DEL [dm3] 2L_4010981_DEL [dm6]	CAC	A	1.932e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15771568	2L_15771568_SNP [dm3] 2L_15771568_SNP [dm6]	T	G	1.983e^-5	0.835	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
3L	3918643	3L_3918643_SNP [dm3] 3L_3918643_SNP [dm6]	A	G	2.101e^-5	0.835	INTRON Eip63F-1
X	12285416	X_12285416_SNP [dm3] X_12391383_SNP [dm6]	A	T	2.110e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20297484	2L_20297484_SNP [dm3] 2L_20297484_SNP [dm6]	A	T	2.315e^-5	0.835	UPSTREAM CR43414 INTERGENIC
3L	5728280	3L_5728280_DEL [dm3] 3L_5735180_DEL [dm6]	CTGGTTTTCG	C	2.413e^-5	0.835	INTRON sif
2L	2923818	2L_2923818_SNP [dm3] 2L_2923818_SNP [dm6]	C	T	2.508e^-5	0.835	INTRON lilli
2L	4170174	2L_4170174_SNP [dm3] 2L_4170174_SNP [dm6]	C	T	2.555e^-5	0.835	INTERGENIC
2R	16274982	2R_16274982_SNP [dm3] 2R_20387477_SNP [dm6]	C	G	2.768e^-5	0.835	INTERGENIC
3L	3857091	3L_3857091_SNP [dm3] 3L_3857091_SNP [dm6]	G	C	2.844e^-5	0.835	INTRON Awh
X	7102363	X_7102363_SNP [dm3] X_7208330_SNP [dm6]	C	G	2.970e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	6715342	2L_6715342_SNP [dm3] 2L_6715342_SNP [dm6]	T	C	2.978e^-5	0.835	INTRON AkhR
2L	17034800	2L_17034800_SNP [dm3] 2L_17034800_SNP [dm6]	T	A	2.983e^-5	0.835	INTERGENIC
2R	18369417	2R_18369417_SNP [dm3] 2R_22481912_SNP [dm6]	G	A	3.006e^-5	0.835	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16620567	2L_16620567_SNP [dm3] 2L_16620567_SNP [dm6]	A	G	3.042e^-5	0.835	INTRON CG42389
2L	10307866	2L_10307866_SNP [dm3] 2L_10307866_SNP [dm6]	T	A	3.062e^-5	0.835	SYNONYMOUS_CODING CG4968 DOWNSTREAM Cdk5alpha
3L	3279578	3L_3279578_SNP [dm3] 3L_3279578_SNP [dm6]	A	G	3.149e^-5	0.835	UPSTREAM CG12017 INTERGENIC
3L	8251814	3L_8251814_SNP [dm3] 3L_8258714_SNP [dm6]	G	A	3.334e^-5	0.835	INTRON Dscam4
3L	3549992	3L_3549992_SNP [dm3] 3L_3549992_SNP [dm6]	T	G	3.342e^-5	0.835	INTRON Eip63E
2R	4943185	2R_4943185_SNP [dm3] 2R_9055680_SNP [dm6]	C	G	3.369e^-5	0.835	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15748384	2L_15748384_INS [dm3] 2L_15748384_INS [dm6]	A	ATAA	3.372e^-5	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6610686	3L_6610686_SNP [dm3] 3L_6617586_SNP [dm6]	G	T	3.477e^-5	0.835	INTRON CG8398
2L	10679205	2L_10679205_SNP [dm3] 2L_10679205_SNP [dm6]	T	C	3.490e^-5	0.835	SYNONYMOUS_CODING CG17104 DOWNSTREAM CR44180
2R	11741837	2R_11741837_SNP [dm3] 2R_15854332_SNP [dm6]	C	T	3.503e^-5	0.835	UTR_3_PRIME tun DOWNSTREAM tun
3R	16750446	3R_16750446_SNP [dm3] 3R_20924724_SNP [dm6]	T	C	3.525e^-5	0.835	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
2L	1277439	2L_1277439_SNP [dm3] 2L_1277439_SNP [dm6]	A	G	3.529e^-5	0.835	INTRON robo3
3R	26766613	3R_26766613_SNP [dm3] 3R_30940891_SNP [dm6]	C	T	3.574e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12136333	2L_12136333_INS [dm3] 2L_12136333_INS [dm6]	T	TTTGTAAGT	3.577e^-5	0.835	INTERGENIC
3R	20830577	3R_20830577_SNP [dm3] 3R_25004855_SNP [dm6]	A	T	3.586e^-5	0.835	INTRON tnc
2L	20297257	2L_20297257_SNP [dm3] 2L_20297257_SNP [dm6]	G	C	3.689e^-5	0.835	EXON CR43414
3L	8850809	3L_8850809_SNP [dm3] 3L_8857709_SNP [dm6]	G	T	3.777e^-5	0.835	INTRON dally
2L	16051181	2L_16051181_SNP [dm3] 2L_16051181_SNP [dm6]	A	T	3.790e^-5	0.835	INTRON beat-Ia	TF binding site mE1_TFBS_cad
2L	13682311	2L_13682311_SNP [dm3] 2L_13682311_SNP [dm6]	T	C	3.813e^-5	0.835	INTRON CG31814
2L	16620673	2L_16620673_SNP [dm3] 2L_16620673_SNP [dm6]	G	T	3.869e^-5	0.835	INTRON CG42389
3L	3518870	3L_3518870_SNP [dm3] 3L_3518870_SNP [dm6]	G	A	3.916e^-5	0.835	INTRON Eip63E
2L	18583948	2L_18583948_SNP [dm3] 2L_18583948_SNP [dm6]	G	C	3.972e^-5	0.835	INTRON Pde11	transposable element FlyBase
3L	1249364	3L_1249364_SNP [dm3] 3L_1249364_SNP [dm6]	C	G	4.034e^-5	0.835	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5231182	2R_5231182_SNP [dm3] 2R_9343677_SNP [dm6]	G	A	4.111e^-5	0.835	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_inv
3L	9777742	3L_9777742_SNP [dm3] 3L_9784642_SNP [dm6]	T	G	4.371e^-5	0.835	INTRON CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2123236	3L_2123236_SNP [dm3] 3L_2123236_SNP [dm6]	G	T	4.439e^-5	0.835	INTRON zormin
3L	9700402	3L_9700402_SNP [dm3] 3L_9707302_SNP [dm6]	T	G	4.459e^-5	0.835	NON_SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19876871	2L_19876871_SNP [dm3] 2L_19876871_SNP [dm6]	C	T	4.476e^-5	0.835	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3919516	3L_3919516_SNP [dm3] 3L_3919516_SNP [dm6]	T	G	4.525e^-5	0.835	INTRON Eip63F-1
2R	3772050	2R_3772050_SNP [dm3] 2R_7884545_SNP [dm6]	G	A	4.597e^-5	0.835	INTRON Dgk
2R	15152946	2R_15152946_SNP [dm3] 2R_19265441_SNP [dm6]	G	C	4.614e^-5	0.835	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	10982377	3R_10982377_DEL [dm3] 3R_15156655_DEL [dm6]	GTGAAAAGTGAAAACTTCTG...	G	4.768e^-5	0.835	INTRON Gyc88E
2L	16620588	2L_16620588_SNP [dm3] 2L_16620588_SNP [dm6]	C	T	4.785e^-5	0.835	INTRON CG42389
2L	15999380	2L_15999380_SNP [dm3] 2L_15999380_SNP [dm6]	A	T	4.799e^-5	0.835	UPSTREAM beat-Ic INTERGENIC
3L	3785856	3L_3785856_SNP [dm3] 3L_3785856_SNP [dm6]	G	T	4.808e^-5	0.835	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	7100166	X_7100166_DEL [dm3] X_7206133_DEL [dm6]	CC	C	4.812e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA
X	7102667	X_7102667_SNP [dm3] X_7208634_SNP [dm6]	T	C	4.830e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	15771536	2L_15771536_SNP [dm3] 2L_15771536_SNP [dm6]	T	A	4.885e^-5	0.835	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	9205123	X_9205123_SNP [dm3] X_9311090_SNP [dm6]	T	G	4.913e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	17626946	X_17626946_SNP [dm3] X_17732913_SNP [dm6]	T	C	4.940e^-5	0.835	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20470499	X_20470499_SNP [dm3] X_20599472_SNP [dm6]	C	T	5.005e^-5	0.835	INTRON RunxA
2L	2914838	2L_2914838_SNP [dm3] 2L_2914838_SNP [dm6]	G	C	5.039e^-5	0.835	INTRON lilli
X	19254183	X_19254183_SNP [dm3] X_19360150_SNP [dm6]	T	A	5.045e^-5	0.835	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10287381	3R_10287381_SNP [dm3] 3R_14461659_SNP [dm6]	G	T	5.060e^-5	0.835	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	13182505	3L_13182505_SNP [dm3] 3L_13189405_SNP [dm6]	A	C	5.111e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3889503	3L_3889503_SNP [dm3] 3L_3889503_SNP [dm6]	C	T	5.228e^-5	0.835	INTERGENIC
2L	15803532	2L_15803532_SNP [dm3] 2L_15803532_SNP [dm6]	C	T	5.236e^-5	0.835	INTERGENIC
2L	17538006	2L_17538006_SNP [dm3] 2L_17538006_SNP [dm6]	C	T	5.300e^-5	0.835	INTERGENIC
3R	9548286	3R_9548286_DEL [dm3] 3R_13722564_DEL [dm6]	GG	G	5.372e^-5	0.835	INTRON CG34383
X	18287336	X_18287336_SNP [dm3] X_18393303_SNP [dm6]	T	A	5.426e^-5	0.835	INTRON CG32549
2R	17328608	2R_17328608_INS [dm3] 2R_21441103_INS [dm6]	T	TT	5.433e^-5	0.835	INTRON Sdc
3L	3960854	3L_3960854_SNP [dm3] 3L_3960854_SNP [dm6]	G	A	5.435e^-5	0.835	UPSTREAM CG12605 INTRON CG12605
2L	15755675	2L_15755675_SNP [dm3] 2L_15755675_SNP [dm6]	T	C	5.475e^-5	0.835	UTR_3_PRIME l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
2L	3870590	2L_3870590_SNP [dm3] 2L_3870590_SNP [dm6]	C	T	5.477e^-5	0.835	DOWNSTREAM CG31957 INTRON Cep97	TF binding site mE1_TFBS_sens
3R	9670497	3R_9670497_SNP [dm3] 3R_13844775_SNP [dm6]	C	T	5.523e^-5	0.835	INTERGENIC
X	17626918	X_17626918_SNP [dm3] X_17732885_SNP [dm6]	G	T	5.540e^-5	0.835	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22279814	3R_22279814_SNP [dm3] 3R_26454092_SNP [dm6]	G	A	5.580e^-5	0.835	UTR_3_PRIME CG5447 UPSTREAM CG43117
2R	18274924	2R_18274924_SNP [dm3] 2R_22387419_SNP [dm6]	T	G	5.611e^-5	0.835	INTRON CG13506 EXON CR44757
2R	17531966	2R_17531966_SNP [dm3] 2R_21644461_SNP [dm6]	C	A	5.929e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3411369	2L_3411369_DEL [dm3] 2L_3411369_DEL [dm6]	TT	T	6.082e^-5	0.835	DOWNSTREAM CG8840 INTRON pgant2
2L	10869833	2L_10869833_SNP [dm3] 2L_10869833_SNP [dm6]	T	C	6.103e^-5	0.835	UPSTREAM CG12517 INTERGENIC	TF binding site mE1_TFBS_inv
3L	9347106	3L_9347106_SNP [dm3] 3L_9354006_SNP [dm6]	A	T	6.107e^-5	0.835	SYNONYMOUS_CODING UGP UPSTREAM CG32040
2L	15460697	2L_15460697_SNP [dm3] 2L_15460697_SNP [dm6]	G	T	6.126e^-5	0.835	INTERGENIC
3R	27783885	3R_27783885_DEL [dm3] 3R_31958163_DEL [dm6]	CC	C	6.162e^-5	0.835	INTRON heph
3R	14033081	3R_14033081_DEL [dm3] 3R_18207359_DEL [dm6]	TT	T	6.171e^-5	0.835	INTRON CG7985
2L	16051161	2L_16051161_SNP [dm3] 2L_16051161_SNP [dm6]	A	T	6.200e^-5	0.835	INTRON beat-Ia	TF binding site mE1_TFBS_cad
2L	13483497	2L_13483497_SNP [dm3] 2L_13483497_SNP [dm6]	C	T	6.347e^-5	0.835	UTR_5_PRIME CG42784 INTRON CG42784
2L	10093145	2L_10093145_SNP [dm3] 2L_10093145_SNP [dm6]	A	T	6.408e^-5	0.835	UPSTREAM CG13133 & 1 other INTRON CG44153
2L	15771836	2L_15771836_SNP [dm3] 2L_15771836_SNP [dm6]	A	C	6.485e^-5	0.835	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
2R	19971500	2R_19971500_SNP [dm3] 2R_24083977_SNP [dm6]	G	A	6.625e^-5	0.835	SYNONYMOUS_CODING CG16786
3L	15605755	3L_15605755_SNP [dm3] 3L_15612655_SNP [dm6]	G	A	6.629e^-5	0.835	UPSTREAM CG13449 DOWNSTREAM comm3 INTRON CG13449
X	20417550	X_20417550_SNP [dm3] X_20546523_SNP [dm6]	G	A	6.679e^-5	0.835	INTRON RunxB
3L	3917309	3L_3917309_SNP [dm3] 3L_3917309_SNP [dm6]	A	T	6.713e^-5	0.835	INTRON Eip63F-1	TF binding site mE1_TFBS_cad
2L	12136622	2L_12136622_DEL [dm3] 2L_12136622_DEL [dm6]	ACGAA	T	6.821e^-5	0.835	INTERGENIC
X	8523187	X_8523187_SNP [dm3] X_8629154_SNP [dm6]	A	T	6.871e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4261890	2L_4261890_SNP [dm3] 2L_4261890_SNP [dm6]	G	A	6.961e^-5	0.835	UPSTREAM CR44080 INTERGENIC
3L	15605512	3L_15605512_SNP [dm3] 3L_15612412_SNP [dm6]	G	C	6.964e^-5	0.835	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449 DOWNSTREAM comm3
2L	17031011	2L_17031011_SNP [dm3] 2L_17031011_SNP [dm6]	T	C	6.991e^-5	0.835	INTERGENIC
2L	8370980	2L_8370980_INS [dm3] 2L_8370980_INS [dm6]	C	CATAT	7.122e^-5	0.835	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
3R	19559094	3R_19559094_SNP [dm3] 3R_23733372_SNP [dm6]	C	T	7.189e^-5	0.835	UTR_5_PRIME Rpn9 & 1 other UPSTREAM Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17071492	2R_17071492_SNP [dm3] 2R_21183987_SNP [dm6]	G	T	7.268e^-5	0.835	INTRON tud	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11483025	2L_11483025_SNP [dm3] 2L_11483025_SNP [dm6]	A	T	7.330e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11289027	3R_11289027_SNP [dm3] 3R_15463305_SNP [dm6]	C	T	7.340e^-5	0.835	UTR_5_PRIME AdamTS-A INTRON AdamTS-A
2L	520004	2L_520004_SNP [dm3] 2L_520004_SNP [dm6]	T	C	7.369e^-5	0.835	INTRON ush	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2062022	3L_2062022_SNP [dm3] 3L_2062022_SNP [dm6]	A	T	7.425e^-5	0.835	INTRON sls
2L	15745265	2L_15745265_SNP [dm3] 2L_15745265_SNP [dm6]	A	T	7.454e^-5	0.835	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	14838852	2L_14838852_SNP [dm3] 2L_14838852_SNP [dm6]	T	C	7.489e^-5	0.835	INTERGENIC
2L	20297240	2L_20297240_DEL [dm3] 2L_20297240_DEL [dm6]	CCCTGTGCC	A	7.489e^-5	0.835	EXON CR43414
2L	4261877	2L_4261877_SNP [dm3] 2L_4261877_SNP [dm6]	C	T	7.492e^-5	0.835	UPSTREAM CR44080 INTERGENIC
X	9205260	X_9205260_SNP [dm3] X_9311227_SNP [dm6]	C	T	7.544e^-5	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9753990	3R_9753990_SNP [dm3] 3R_13928268_SNP [dm6]	T	G	7.595e^-5	0.835	INTERGENIC
2L	3908941	2L_3908941_SNP [dm3] 2L_3908941_SNP [dm6]	A	G	7.606e^-5	0.835	INTRON fred
3L	5728813	3L_5728813_SNP [dm3] 3L_5735713_SNP [dm6]	T	A	7.770e^-5	0.835	INTRON sif
3L	3857135	3L_3857135_SNP [dm3] 3L_3857135_SNP [dm6]	C	T	7.840e^-5	0.835	INTRON Awh
3L	15605718	3L_15605718_SNP [dm3] 3L_15612618_SNP [dm6]	C	T	7.853e^-5	0.835	UPSTREAM CG13449 DOWNSTREAM comm3 INTRON CG13449
2L	19188741	2L_19188741_SNP [dm3] 2L_19188741_SNP [dm6]	T	C	7.986e^-5	0.835	SYNONYMOUS_CODING pigeon
X	5765385	X_5765385_SNP [dm3] X_5871352_SNP [dm6]	A	G	7.997e^-5	0.835	SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad
3R	14842998	3R_14842998_SNP [dm3] 3R_19017276_SNP [dm6]	C	T	8.024e^-5	0.835	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14303127	3L_14303127_SNP [dm3] 3L_14310027_SNP [dm6]	G	A	8.026e^-5	0.835	INTRON fz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3619073	3L_3619073_SNP [dm3] 3L_3619073_SNP [dm6]	C	T	8.087e^-5	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	8283159	2L_8283159_SNP [dm3] 2L_8283159_SNP [dm6]	G	A	8.115e^-5	0.835	INTRON Btk29A
3L	14923667	3L_14923667_SNP [dm3] 3L_14930567_SNP [dm6]	G	A	8.173e^-5	0.835	INTRON DCX-EMAP
2R	16562932	2R_16562932_SNP [dm3] 2R_20675427_SNP [dm6]	T	A	8.240e^-5	0.835	INTERGENIC
X	7102550	X_7102550_SNP [dm3] X_7208517_SNP [dm6]	T	A	8.287e^-5	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3R	19601831	3R_19601831_SNP [dm3] 3R_23776109_SNP [dm6]	T	C	8.316e^-5	0.835	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20876812	3L_20876812_SNP [dm3] 3L_20883712_SNP [dm6]	G	T	8.370e^-5	0.835	INTRON CG32432
2L	12136659	2L_12136659_SNP [dm3] 2L_12136659_SNP [dm6]	T	A	8.410e^-5	0.835	INTERGENIC
X	19960526	X_19960526_SNP [dm3] X_20066493_SNP [dm6]	A	C	8.509e^-5	0.835	INTERGENIC
X	12761319	X_12761319_SNP [dm3] X_12867286_SNP [dm6]	A	C	8.543e^-5	0.835	INTRON Pde9
X	18801514	X_18801514_SNP [dm3] X_18907481_SNP [dm6]	T	C	8.546e^-5	0.835	INTRON CG7378
2L	12136404	2L_12136404_SNP [dm3] 2L_12136404_SNP [dm6]	T	C	8.589e^-5	0.835	INTERGENIC
X	17625840	X_17625840_INS [dm3] X_17731807_INS [dm6]	T	TATAATATATTATAATATAT...	8.636e^-5	0.835	INTRON CG42684
3R	14787871	3R_14787871_SNP [dm3] 3R_18962149_SNP [dm6]	A	C	8.645e^-5	0.835	INTRON CG42613 & 1 other
3L	8005086	3L_8005086_SNP [dm3] 3L_8011986_SNP [dm6]	A	G	8.708e^-5	0.835	INTRON nmo
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	8.827e^-5	0.835	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	19380842	3L_19380842_SNP [dm3] 3L_19387742_SNP [dm6]	C	A	8.940e^-5	0.835	NON_SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206
X	17589670	X_17589670_SNP [dm3] X_17695637_SNP [dm6]	G	A	8.988e^-5	0.835	INTRON chas	TF binding site mE1_TFBS_bab1
2L	10586732	2L_10586732_SNP [dm3] 2L_10586732_SNP [dm6]	G	A	9.028e^-5	0.835	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4895274	X_4895274_SNP [dm3] X_5001241_SNP [dm6]	T	A	9.132e^-5	0.835	INTRON CR44833	regulatory region REDfly_CRMs
2R	10312560	2R_10312560_DEL [dm3] 2R_14425055_DEL [dm6]	CC	C	9.136e^-5	0.835	DOWNSTREAM CG17386 INTERGENIC
2L	7968714	2L_7968714_SNP [dm3] 2L_7968714_SNP [dm6]	A	T	9.143e^-5	0.835	INTRON Snoo
2R	9141017	2R_9141017_SNP [dm3] 2R_13253512_SNP [dm6]	T	C	9.234e^-5	0.835	SYNONYMOUS_CODING CG4714 DOWNSTREAM CR44343	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9700420	3L_9700420_SNP [dm3] 3L_9707320_SNP [dm6]	A	G	9.262e^-5	0.835	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13265174	3L_13265174_SNP [dm3] 3L_13272074_SNP [dm6]	G	C	9.280e^-5	0.835	INTRON caps
2R	7544899	2R_7544899_SNP [dm3] 2R_11657394_SNP [dm6]	G	C	9.415e^-5	0.835	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13207485	3L_13207485_SNP [dm3] 3L_13214385_SNP [dm6]	T	C	9.483e^-5	0.835	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5119211	3L_5119211_SNP [dm3] 3L_5126111_SNP [dm6]	G	T	9.495e^-5	0.835	INTERGENIC
3L	3992957	3L_3992957_SNP [dm3] 3L_3992957_SNP [dm6]	C	G	9.560e^-5	0.835	UTR_3_PRIME scrt
2R	16087491	2R_16087491_INS [dm3] 2R_20199986_INS [dm6]	T	TAGCT	9.616e^-5	0.835	INTERGENIC
3L	9423011	3L_9423011_SNP [dm3] 3L_9429911_SNP [dm6]	A	G	9.623e^-5	0.835	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17032603	2L_17032603_SNP [dm3] 2L_17032603_SNP [dm6]	A	G	9.685e^-5	0.835	INTERGENIC
2L	19876692	2L_19876692_DEL [dm3] 2L_19876692_DEL [dm6]	CGTC	C	9.689e^-5	0.835	INTRON sick	TF binding site mE1_TFBS_HSA
2L	8024666	2L_8024666_SNP [dm3] 2L_8024666_SNP [dm6]	C	T	9.695e^-5	0.835	NON_SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_sens
2L	3879802	2L_3879802_SNP [dm3] 2L_3879802_SNP [dm6]	C	T	9.717e^-5	0.835	NON_SYNONYMOUS_CODING capu INTRON capu
X	7105159	X_7105159_SNP [dm3] X_7211126_SNP [dm6]	T	A	9.816e^-5	0.835	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3288375	2L_3288375_SNP [dm3] 2L_3288375_SNP [dm6]	G	A	9.838e^-5	0.835	EXON CR44485
3L	1195575	3L_1195575_SNP [dm3] 3L_1195575_SNP [dm6]	A	T	9.902e^-5	0.835	UPSTREAM LysX & 1 other INTERGENIC
3L	19623575	3L_19623575_SNP [dm3] 3L_19630475_SNP [dm6]	G	C	9.924e^-5	0.835	INTRON wnd
3L	6356832	3L_6356832_SNP [dm3] 3L_6363732_SNP [dm6]	A	G	9.952e^-5	0.835	INTERGENIC
3L	9700246	3L_9700246_SNP [dm3] 3L_9707146_SNP [dm6]	A	G	9.998e^-5	0.835	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18096462	3R_18096462_SNP [dm3] 3R_22270740_SNP [dm6]	A	C	1.003e^-4	0.835	INTRON SKIP
3L	14183025	3L_14183025_SNP [dm3] 3L_14189925_SNP [dm6]	A	T	1.005e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14183024	3L_14183024_SNP [dm3] 3L_14189924_SNP [dm6]	G	C	1.005e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15829918	2R_15829918_SNP [dm3] 2R_19942413_SNP [dm6]	T	C	1.010e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	1.013e^-4	0.835	INTRON CG44837 & 1 other
2R	15059520	2R_15059520_SNP [dm3] 2R_19172015_SNP [dm6]	C	T	1.030e^-4	0.835	INTRON CG10737
2R	19970951	2R_19970951_SNP [dm3] 2R_24083428_SNP [dm6]	A	G	1.030e^-4	0.835	INTRON CG16786
X	12158893	X_12158893_INS [dm3] X_12264860_INS [dm6]	C	CATTGC	1.044e^-4	0.835	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24923761	3R_24923761_SNP [dm3] 3R_29098039_SNP [dm6]	A	G	1.046e^-4	0.835	NON_SYNONYMOUS_CODING CG11873 UTR_5_PRIME CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15748943	2L_15748943_SNP [dm3] 2L_15748943_SNP [dm6]	C	G	1.047e^-4	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3L	6608103	3L_6608103_SNP [dm3] 3L_6615003_SNP [dm6]	A	G	1.062e^-4	0.835	INTRON CG8398
3L	13878235	3L_13878235_SNP [dm3] 3L_13885135_SNP [dm6]	T	A	1.064e^-4	0.835	DOWNSTREAM dysc INTRON dysc	TF binding site BDTNP1_TFBS_dl
2L	15748948	2L_15748948_SNP [dm3] 2L_15748948_SNP [dm6]	G	T	1.068e^-4	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	8279773	2L_8279773_SNP [dm3] 2L_8279773_SNP [dm6]	A	G	1.069e^-4	0.835	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
2R	9655986	2R_9655986_SNP [dm3] 2R_13768481_SNP [dm6]	G	A	1.084e^-4	0.835	INTERGENIC
2L	19911343	2L_19911343_DEL [dm3] 2L_19911343_DEL [dm6]	GTCATTTCACTCAGCTGGCT...	G	1.091e^-4	0.835	DOWNSTREAM TotF INTRON sick EXON CR43097
X	17589671	X_17589671_SNP [dm3] X_17695638_SNP [dm6]	T	G	1.093e^-4	0.835	INTRON chas	TF binding site mE1_TFBS_bab1
2L	20297293	2L_20297293_SNP [dm3] 2L_20297293_SNP [dm6]	C	T	1.096e^-4	0.835	EXON CR43414
3R	24091368	3R_24091368_INS [dm3] 3R_28265646_INS [dm6]	C	CCAAGCTTTTGC...	1.124e^-4	0.835	UPSTREAM CG43124 INTERGENIC
X	18611566	X_18611566_SNP [dm3] X_18717533_SNP [dm6]	G	T	1.125e^-4	0.835	INTRON CCKLR-17D1
3L	2458308	3L_2458308_SNP [dm3] 3L_2458308_SNP [dm6]	C	T	1.134e^-4	0.835	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15862740	3L_15862740_SNP [dm3] 3L_15869640_SNP [dm6]	G	A	1.145e^-4	0.835	INTRON pHCl
2L	19964218	2L_19964218_SNP [dm3] 2L_19964218_SNP [dm6]	C	T	1.145e^-4	0.835	START_GAINED CG10680 UTR_5_PRIME CG10680 DOWNSTREAM CG16772 EXON CR45701	TF binding site mE1_TFBS_HSA
X	7102552	X_7102552_DEL [dm3] X_7208519_DEL [dm6]	AGTATTTAT	A	1.157e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3R	14423547	3R_14423547_SNP [dm3] 3R_18597825_SNP [dm6]	G	A	1.162e^-4	0.835	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5642350	2R_5642350_SNP [dm3] 2R_9754845_SNP [dm6]	A	T	1.162e^-4	0.835	INTRON trpl
X	7100186	X_7100186_SNP [dm3] X_7206153_SNP [dm6]	T	A	1.164e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA
2L	9387970	2L_9387970_SNP [dm3] 2L_9387970_SNP [dm6]	G	A	1.167e^-4	0.835	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14282996	3R_14282996_SNP [dm3] 3R_18457274_SNP [dm6]	G	A	1.168e^-4	0.835	INTRON fru
2L	20297276	2L_20297276_SNP [dm3] 2L_20297276_SNP [dm6]	G	T	1.174e^-4	0.835	EXON CR43414
2R	19054585	2R_19054585_SNP [dm3] 2R_23167062_SNP [dm6]	T	A	1.191e^-4	0.835	INTRON CG34371	TF binding site mE1_TFBS_HSA
2R	14278384	2R_14278384_SNP [dm3] 2R_18390879_SNP [dm6]	T	C	1.196e^-4	0.835	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	6705078	3R_6705078_SNP [dm3] 3R_10879356_SNP [dm6]	C	T	1.197e^-4	0.835	UPSTREAM CG14695 DOWNSTREAM Tpc1 INTERGENIC	TF binding site mE1_TFBS_HSA
X	12763830	X_12763830_SNP [dm3] X_12869797_SNP [dm6]	C	T	1.204e^-4	0.835	INTRON Pde9	TF binding site mE1_TFBS_Trl
2L	2002052	2L_2002052_SNP [dm3] 2L_2002052_SNP [dm6]	C	T	1.227e^-4	0.835	INTRON CG33543 EXON CR43464
3L	11641197	3L_11641197_SNP [dm3] 3L_11648097_SNP [dm6]	A	G	1.248e^-4	0.835	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14423609	3R_14423609_SNP [dm3] 3R_18597887_SNP [dm6]	T	G	1.255e^-4	0.835	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8005084	3L_8005084_SNP [dm3] 3L_8011984_SNP [dm6]	C	A	1.261e^-4	0.835	INTRON nmo
2L	6011886	2L_6011886_SNP [dm3] 2L_6011886_SNP [dm6]	G	A	1.263e^-4	0.835	SYNONYMOUS_CODING CG9098 UTR_5_PRIME CG9098 UPSTREAM CG9098	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14423569	3R_14423569_SNP [dm3] 3R_18597847_SNP [dm6]	T	C	1.265e^-4	0.835	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14283044	3R_14283044_SNP [dm3] 3R_18457322_SNP [dm6]	G	A	1.267e^-4	0.835	INTRON fru
3R	17710808	3R_17710808_SNP [dm3] 3R_21885086_SNP [dm6]	A	T	1.281e^-4	0.835	SYNONYMOUS_CODING CG17819 UPSTREAM CR45046 & 1 other DOWNSTREAM dnd	TF binding site BDTNP1_TFBS_twi
2L	11468222	2L_11468222_SNP [dm3] 2L_11468222_SNP [dm6]	G	C	1.283e^-4	0.835	INTERGENIC
3L	14183325	3L_14183325_SNP [dm3] 3L_14190225_SNP [dm6]	C	G	1.283e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
2R	14278378	2R_14278378_SNP [dm3] 2R_18390873_SNP [dm6]	G	T	1.288e^-4	0.835	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3L	8062555	3L_8062555_SNP [dm3] 3L_8069455_SNP [dm6]	T	C	1.289e^-4	0.835	UTR_3_PRIME CG42591 UPSTREAM CG42590 INTRON Ect4
2R	16605655	2R_16605655_SNP [dm3] 2R_20718150_SNP [dm6]	C	G	1.302e^-4	0.835	INTRON dpr
3L	9303473	3L_9303473_SNP [dm3] 3L_9310373_SNP [dm6]	T	C	1.305e^-4	0.835	INTERGENIC
2R	10289524	2R_10289524_SNP [dm3] 2R_14402019_SNP [dm6]	A	G	1.306e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25759311	3R_25759311_SNP [dm3] 3R_29933589_SNP [dm6]	C	T	1.317e^-4	0.835	UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha INTRON CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3279471	3L_3279471_SNP [dm3] 3L_3279471_SNP [dm6]	G	A	1.322e^-4	0.835	UPSTREAM CG12017 INTERGENIC
X	18011652	X_18011652_SNP [dm3] X_18117619_SNP [dm6]	A	G	1.323e^-4	0.835	UPSTREAM wupA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5712788	X_5712788_SNP [dm3] X_5818755_SNP [dm6]	G	A	1.325e^-4	0.835	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7900455	3L_7900455_SNP [dm3] 3L_7907355_SNP [dm6]	G	A	1.328e^-4	0.835	INTRON pbl
3R	18033193	3R_18033193_SNP [dm3] 3R_22207471_SNP [dm6]	C	T	1.330e^-4	0.835	INTRON SKIP & 1 other
3L	9812223	3L_9812223_SNP [dm3] 3L_9819123_SNP [dm6]	C	T	1.339e^-4	0.835	UPSTREAM CG43897 INTRON CG43897
3L	5219143	3L_5219143_SNP [dm3] 3L_5226043_SNP [dm6]	T	A	1.347e^-4	0.835	INTRON shep
3L	16731615	3L_16731615_SNP [dm3] 3L_16738515_SNP [dm6]	G	A	1.348e^-4	0.835	INTRON CG9701	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3095689	2L_3095689_SNP [dm3] 2L_3095689_SNP [dm6]	C	T	1.349e^-4	0.835	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	3772109	2R_3772109_INS [dm3] 2R_7884604_INS [dm6]	G	GGG	1.360e^-4	0.835	INTRON Dgk
3L	4096026	3L_4096026_SNP [dm3] 3L_4096026_SNP [dm6]	G	A	1.365e^-4	0.835	SYNONYMOUS_CODING CG14995 UTR_3_PRIME CG14995 INTRON CG14995	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16731463	3L_16731463_INS [dm3] 3L_16738363_INS [dm6]	T	TC	1.368e^-4	0.835	INTRON CG9701	TF binding site mE1_TFBS_sens
2L	8346104	2L_8346104_SNP [dm3] 2L_8346104_SNP [dm6]	G	C	1.392e^-4	0.835	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5712222	3L_5712222_SNP [dm3] 3L_5719122_SNP [dm6]	A	C	1.394e^-4	0.835	INTRON sif
3L	14182957	3L_14182957_SNP [dm3] 3L_14189857_SNP [dm6]	A	G	1.396e^-4	0.835	UPSTREAM nan INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	8094070	X_8094070_SNP [dm3] X_8200037_SNP [dm6]	T	C	1.417e^-4	0.835	INTRON sdt
X	8224461	X_8224461_SNP [dm3] X_8330428_SNP [dm6]	A	T	1.421e^-4	0.835	INTRON nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11922826	3L_11922826_SNP [dm3] 3L_11929726_SNP [dm6]	G	A	1.422e^-4	0.835	INTRON CG44837 & 1 other
2L	14448576	2L_14448576_SNP [dm3] 2L_14448576_SNP [dm6]	A	G	1.424e^-4	0.835	EXON CR45726	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19512431	X_19512431_SNP [dm3] X_19618398_SNP [dm6]	T	C	1.427e^-4	0.835	DOWNSTREAM CG14221 INTRON CG12788 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9559035	3R_9559035_SNP [dm3] 3R_13733313_SNP [dm6]	C	T	1.432e^-4	0.835	INTRON CG34383	TF binding site BDTNP1_TFBS_dl
3R	19601839	3R_19601839_SNP [dm3] 3R_23776117_SNP [dm6]	G	A	1.437e^-4	0.835	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7056462	X_7056462_SNP [dm3] X_7162429_SNP [dm6]	T	G	1.438e^-4	0.835	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	2579506	2R_2579506_SNP [dm3] 2R_6692001_SNP [dm6]	C	G	1.463e^-4	0.835	SYNONYMOUS_CODING CG9422
3L	2848620	3L_2848620_SNP [dm3] 3L_2848620_SNP [dm6]	A	G	1.463e^-4	0.835	INTRON CG43444	TF binding site mE1_TFBS_cad
3R	26480656	3R_26480656_SNP [dm3] 3R_30654934_SNP [dm6]	A	G	1.464e^-4	0.835	INTERGENIC
3L	14172888	3L_14172888_SNP [dm3] 3L_14179788_SNP [dm6]	A	G	1.465e^-4	0.835	INTERGENIC	regulatory region REDfly_CRMs
X	5067570	X_5067570_SNP [dm3] X_5173537_SNP [dm6]	G	A	1.465e^-4	0.835	INTRON rg & 1 other
X	4895252	X_4895252_SNP [dm3] X_5001219_SNP [dm6]	G	A	1.469e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3R	21328404	3R_21328404_SNP [dm3] 3R_25502682_SNP [dm6]	G	A	1.491e^-4	0.835	UPSTREAM CR43457 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3993142	3L_3993142_SNP [dm3] 3L_3993142_SNP [dm6]	C	T	1.494e^-4	0.835	UTR_3_PRIME scrt
3L	14182976	3L_14182976_SNP [dm3] 3L_14189876_SNP [dm6]	T	G	1.502e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21054606	3R_21054606_SNP [dm3] 3R_25228884_SNP [dm6]	G	A	1.504e^-4	0.835	INTRON Cad96Cb
X	8523072	X_8523072_SNP [dm3] X_8629039_SNP [dm6]	T	G	1.508e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5725042	X_5725042_SNP [dm3] X_5831009_SNP [dm6]	T	A	1.509e^-4	0.835	DOWNSTREAM CR43264 INTRON CG15765
3L	3919407	3L_3919407_SNP [dm3] 3L_3919407_SNP [dm6]	A	T	1.510e^-4	0.835	INTRON Eip63F-1
3L	3673830	3L_3673830_SNP [dm3] 3L_3673830_SNP [dm6]	G	A	1.520e^-4	0.835	INTERGENIC
2R	6991304	2R_6991304_SNP [dm3] 2R_11103799_SNP [dm6]	G	T	1.525e^-4	0.835	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	8558980	2R_8558980_SNP [dm3] 2R_12671475_SNP [dm6]	C	T	1.529e^-4	0.835	NON_SYNONYMOUS_CODING CG42708 INTRON CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7100632	X_7100632_SNP [dm3] X_7206599_SNP [dm6]	C	A	1.539e^-4	0.835	INTRON CR44357 & 1 other
2R	10938141	2R_10938141_SNP [dm3] 2R_15050636_SNP [dm6]	C	T	1.540e^-4	0.835	UPSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	16193090	3R_16193090_SNP [dm3] 3R_20367368_SNP [dm6]	A	C	1.547e^-4	0.835	INTERGENIC
X	12918988	X_12918988_SNP [dm3] X_13024955_SNP [dm6]	G	T	1.549e^-4	0.835	INTRON rad
2L	3871297	2L_3871297_SNP [dm3] 2L_3871297_SNP [dm6]	C	T	1.552e^-4	0.835	UTR_3_PRIME Cep97 & 1 other DOWNSTREAM CG31957	TF binding site mE1_TFBS_sens
2L	5966335	2L_5966335_SNP [dm3] 2L_5966335_SNP [dm6]	A	G	1.553e^-4	0.835	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9697385	3L_9697385_SNP [dm3] 3L_9704285_SNP [dm6]	G	A	1.555e^-4	0.835	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19249883	2L_19249883_SNP [dm3] 2L_19249883_SNP [dm6]	T	C	1.555e^-4	0.835	INTERGENIC
3R	4721982	3R_4721982_SNP [dm3] 3R_8896260_SNP [dm6]	C	T	1.557e^-4	0.835	INTRON pyd	TF binding site mE1_TFBS_Trl
2L	10959289	2L_10959289_SNP [dm3] 2L_10959289_SNP [dm6]	A	T	1.558e^-4	0.835	INTRON dpr2
3L	8251820	3L_8251820_SNP [dm3] 3L_8258720_SNP [dm6]	T	C	1.571e^-4	0.835	INTRON Dscam4
3R	9855933	3R_9855933_SNP [dm3] 3R_14030211_SNP [dm6]	A	G	1.572e^-4	0.835	NON_SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl
2R	17532000	2R_17532000_SNP [dm3] 2R_21644495_SNP [dm6]	T	C	1.605e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22734132	3R_22734132_SNP [dm3] 3R_26908410_SNP [dm6]	A	G	1.613e^-4	0.835	INTRON T48
X	4895281	X_4895281_SNP [dm3] X_5001248_SNP [dm6]	C	T	1.615e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3L	9871899	3L_9871899_SNP [dm3] 3L_9878799_SNP [dm6]	G	A	1.632e^-4	0.835	UPSTREAM CG34382 INTERGENIC	TF binding site mE1_TFBS_inv
3L	15790917	3L_15790917_SNP [dm3] 3L_15797817_SNP [dm6]	G	C	1.636e^-4	0.835	INTERGENIC
3R	20812928	3R_20812928_SNP [dm3] 3R_24987206_SNP [dm6]	G	A	1.638e^-4	0.835	INTRON tnc
2L	20284156	2L_20284156_SNP [dm3] 2L_20284156_SNP [dm6]	A	G	1.653e^-4	0.835	INTERGENIC
2L	11481708	2L_11481708_SNP [dm3] 2L_11481708_SNP [dm6]	G	A	1.655e^-4	0.835	INTERGENIC
3L	12542087	3L_12542087_SNP [dm3] 3L_12548987_SNP [dm6]	C	T	1.660e^-4	0.835	INTRON sowah
3L	9866334	3L_9866334_SNP [dm3] 3L_9873234_SNP [dm6]	G	A	1.670e^-4	0.835	INTERGENIC
3R	12956061	3R_12956061_SNP [dm3] 3R_17130339_SNP [dm6]	A	G	1.670e^-4	0.835	SYNONYMOUS_CODING CG17475 DOWNSTREAM CG4053	TF binding site mE1_TFBS_cad
2L	3230739	2L_3230739_SNP [dm3] 2L_3230739_SNP [dm6]	A	C	1.671e^-4	0.835	INTERGENIC
X	7102357	X_7102357_INS [dm3] X_7208324_INS [dm6]	G	GG	1.678e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	4273703	2L_4273703_SNP [dm3] 2L_4273703_SNP [dm6]	G	C	1.685e^-4	0.835	INTERGENIC
3R	4455807	3R_4455807_SNP [dm3] 3R_8630085_SNP [dm6]	C	A	1.688e^-4	0.835	DOWNSTREAM 5-HT2B INTERGENIC
3L	5797249	3L_5797249_SNP [dm3] 3L_5804149_SNP [dm6]	A	G	1.693e^-4	0.835	UTR_5_PRIME CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9778262	3L_9778262_SNP [dm3] 3L_9785162_SNP [dm6]	G	A	1.701e^-4	0.835	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3279526	3L_3279526_SNP [dm3] 3L_3279526_SNP [dm6]	G	A	1.703e^-4	0.835	UPSTREAM CG12017 INTERGENIC
2L	9574405	2L_9574405_SNP [dm3] 2L_9574405_SNP [dm6]	G	A	1.711e^-4	0.835	SPLICE_SITE_REGION Mtpalpha SYNONYMOUS_CODING Mtpalpha DOWNSTREAM CG3838
X	8740982	X_8740982_SNP [dm3] X_8846949_SNP [dm6]	A	T	1.725e^-4	0.835	INTRON CG12075
2L	10969717	2L_10969717_SNP [dm3] 2L_10969717_SNP [dm6]	T	C	1.727e^-4	0.835	SYNONYMOUS_CODING CG33129 UPSTREAM YL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12093128	2R_12093128_SNP [dm3] 2R_16205623_SNP [dm6]	C	T	1.728e^-4	0.835	UPSTREAM mrj INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15260037	X_15260037_SNP [dm3] X_15366004_SNP [dm6]	A	T	1.730e^-4	0.835	INTRON acj6
3R	11517852	3R_11517852_SNP [dm3] 3R_15692130_SNP [dm6]	G	T	1.735e^-4	0.835	UPSTREAM CG31446 INTERGENIC
X	17248374	X_17248374_SNP [dm3] X_17354341_SNP [dm6]	C	T	1.740e^-4	0.835	INTERGENIC
X	13212183	X_13212183_SNP [dm3] X_13318150_SNP [dm6]	A	T	1.747e^-4	0.835	INTRON IP3K2
3L	2159699	3L_2159699_SNP [dm3] 3L_2159699_SNP [dm6]	C	A	1.753e^-4	0.835	INTRON CG15822	TF binding site mE1_TFBS_inv
2L	4273700	2L_4273700_SNP [dm3] 2L_4273700_SNP [dm6]	T	A	1.760e^-4	0.835	INTERGENIC
X	7101716	X_7101716_SNP [dm3] X_7207683_SNP [dm6]	C	T	1.761e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5601975	X_5601975_SNP [dm3] X_5707942_SNP [dm6]	G	A	1.762e^-4	0.835	SPLICE_SITE_REGION CG4096 DOWNSTREAM CG33080 INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	17589733	X_17589733_SNP [dm3] X_17695700_SNP [dm6]	T	C	1.765e^-4	0.835	INTRON chas	TF binding site mE1_TFBS_bab1
3L	13207473	3L_13207473_SNP [dm3] 3L_13214373_SNP [dm6]	C	A	1.781e^-4	0.835	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2792779	3L_2792779_SNP [dm3] 3L_2792779_SNP [dm6]	C	T	1.795e^-4	0.835	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7100172	X_7100172_SNP [dm3] X_7206139_SNP [dm6]	G	T	1.796e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA
2R	16731462	2R_16731462_SNP [dm3] 2R_20843957_SNP [dm6]	T	C	1.798e^-4	0.835	INTERGENIC
3L	3113437	3L_3113437_SNP [dm3] 3L_3113437_SNP [dm6]	G	A	1.799e^-4	0.835	INTRON CG45067
3R	22639931	3R_22639931_SNP [dm3] 3R_26814209_SNP [dm6]	G	T	1.799e^-4	0.835	INTRON Tl
X	21905013	X_21905013_SNP [dm3] X_22503177_SNP [dm6]	G	T	1.808e^-4	0.835	INTRON l_1_G0196
3L	8251797	3L_8251797_DEL [dm3] 3L_8258697_DEL [dm6]	TTT	T	1.810e^-4	0.835	INTRON Dscam4
2L	18805381	2L_18805381_SNP [dm3] 2L_18805381_SNP [dm6]	A	G	1.812e^-4	0.835	UPSTREAM CG43814 DOWNSTREAM CR43817 INTERGENIC
3R	19585028	3R_19585028_SNP [dm3] 3R_23759306_SNP [dm6]	T	C	1.818e^-4	0.835	UPSTREAM Hrd3 DOWNSTREAM CG10219 INTRON Plip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
X	7221625	X_7221625_SNP [dm3] X_7327592_SNP [dm6]	A	G	1.840e^-4	0.835	UTR_3_PRIME Dok INTRON CR44357 & 1 other
3L	12438621	3L_12438621_SNP [dm3] 3L_12445521_SNP [dm6]	C	T	1.855e^-4	0.835	INTERGENIC
2R	19132626	2R_19132626_SNP [dm3] 2R_23245103_SNP [dm6]	G	A	1.865e^-4	0.835	START_GAINED yip3 UTR_5_PRIME yip3 INTRON yip3
2L	13682324	2L_13682324_DEL [dm3] 2L_13682324_DEL [dm6]	AAC	A	1.871e^-4	0.835	INTRON CG31814
X	4895189	X_4895189_SNP [dm3] X_5001156_SNP [dm6]	C	A	1.876e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3R	19585082	3R_19585082_SNP [dm3] 3R_23759360_SNP [dm6]	G	A	1.876e^-4	0.835	SPLICE_SITE_REGION Plip SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11481715	2L_11481715_SNP [dm3] 2L_11481715_SNP [dm6]	C	A	1.878e^-4	0.835	INTERGENIC
2L	11500001	2L_11500001_SNP [dm3] 2L_11500001_SNP [dm6]	T	C	1.880e^-4	0.835	INTERGENIC
2L	15748981	2L_15748981_SNP [dm3] 2L_15748981_SNP [dm6]	G	T	1.888e^-4	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
X	5765427	X_5765427_SNP [dm3] X_5871394_SNP [dm6]	C	T	1.897e^-4	0.835	SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad
2L	14506143	2L_14506143_SNP [dm3] 2L_14506143_SNP [dm6]	A	C	1.902e^-4	0.835	INTERGENIC
2L	11478315	2L_11478315_SNP [dm3] 2L_11478315_SNP [dm6]	T	C	1.906e^-4	0.835	INTERGENIC
3R	14423564	3R_14423564_SNP [dm3] 3R_18597842_SNP [dm6]	G	A	1.916e^-4	0.835	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7900460	3L_7900460_SNP [dm3] 3L_7907360_SNP [dm6]	G	A	1.924e^-4	0.835	INTRON pbl
2R	2579493	2R_2579493_SNP [dm3] 2R_6691988_SNP [dm6]	T	G	1.933e^-4	0.835	NON_SYNONYMOUS_CODING CG9422
3L	11641023	3L_11641023_SNP [dm3] 3L_11647923_SNP [dm6]	G	T	1.946e^-4	0.835	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26771773	3R_26771773_SNP [dm3] 3R_30946051_SNP [dm6]	G	C	1.947e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	15748960	2L_15748960_SNP [dm3] 2L_15748960_SNP [dm6]	A	T	1.949e^-4	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	16051667	2L_16051667_SNP [dm3] 2L_16051667_SNP [dm6]	C	T	1.951e^-4	0.835	INTRON beat-Ia	TF binding site mE1_TFBS_cad
3R	1890479	3R_1890479_INS [dm3] 3R_6064757_INS [dm6]	A	AT	1.952e^-4	0.835	INTERGENIC
2R	14088081	2R_14088081_SNP [dm3] 2R_18200576_SNP [dm6]	T	A	1.953e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8224539	X_8224539_SNP [dm3] X_8330506_SNP [dm6]	G	C	1.965e^-4	0.835	INTRON nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18402820	2R_18402820_SNP [dm3] 2R_22515315_SNP [dm6]	T	A	1.966e^-4	0.835	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17725771	2R_17725771_SNP [dm3] 2R_21838266_SNP [dm6]	C	T	1.978e^-4	0.835	NON_SYNONYMOUS_CODING CG4372
2L	4717207	2L_4717207_SNP [dm3] 2L_4717207_SNP [dm6]	G	A	1.985e^-4	0.835	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20014008	3R_20014008_SNP [dm3] 3R_24188286_SNP [dm6]	A	G	1.988e^-4	0.835	SYNONYMOUS_CODING CG5515 DOWNSTREAM CHORD & 1 other	TF binding site mE1_TFBS_sens
2L	15770110	2L_15770110_SNP [dm3] 2L_15770110_SNP [dm6]	G	A	1.991e^-4	0.835	SYNONYMOUS_CODING Ku80
2R	8293428	2R_8293428_SNP [dm3] 2R_12405923_SNP [dm6]	G	A	1.997e^-4	0.835	UPSTREAM Cpr49Af DOWNSTREAM Cpr49Ae INTERGENIC
3L	14183294	3L_14183294_DEL [dm3] 3L_14190194_DEL [dm6]	GTCC	G	2.002e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
3L	14183302	3L_14183302_SNP [dm3] 3L_14190202_SNP [dm6]	C	T	2.002e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
3R	22958083	3R_22958083_SNP [dm3] 3R_27132361_SNP [dm6]	A	T	2.003e^-4	0.835	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8626995	X_8626995_SNP [dm3] X_8732962_SNP [dm6]	C	T	2.006e^-4	0.835	INTERGENIC
X	9500136	X_9500136_SNP [dm3] X_9606103_SNP [dm6]	G	A	2.008e^-4	0.835	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
3R	23405414	3R_23405414_SNP [dm3] 3R_27579692_SNP [dm6]	A	C	2.009e^-4	0.835	INTRON wdb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2922839	2L_2922839_DEL [dm3] 2L_2922839_DEL [dm6]	TT	T	2.011e^-4	0.835	INTRON lilli
3L	13207476	3L_13207476_SNP [dm3] 3L_13214376_SNP [dm6]	T	A	2.040e^-4	0.835	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13207492	3L_13207492_SNP [dm3] 3L_13214392_SNP [dm6]	C	T	2.040e^-4	0.835	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4172754	2L_4172754_SNP [dm3] 2L_4172754_SNP [dm6]	T	G	2.047e^-4	0.835	INTERGENIC
3L	14183327	3L_14183327_SNP [dm3] 3L_14190227_SNP [dm6]	G	A	2.047e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
2L	17004196	2L_17004196_SNP [dm3] 2L_17004196_SNP [dm6]	G	T	2.062e^-4	0.835	INTERGENIC
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	2.066e^-4	0.835	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
2L	10057340	2L_10057340_SNP [dm3] 2L_10057340_SNP [dm6]	G	A	2.066e^-4	0.835	INTRON Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14183954	3L_14183954_SNP [dm3] 3L_14190854_SNP [dm6]	A	T	2.076e^-4	0.835	UPSTREAM nuf INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	12178748	3L_12178748_DEL [dm3] 3L_12185648_DEL [dm6]	ATGTAA	A	2.079e^-4	0.835	UPSTREAM CG6910 INTRON CG6910
3R	1645087	3R_1645087_SNP [dm3] 3R_5819365_SNP [dm6]	C	A	2.083e^-4	0.835	SYNONYMOUS_CODING Hpr1 DOWNSTREAM CG42675	TF binding site mE1_TFBS_cad
3L	10608120	3L_10608120_SNP [dm3] 3L_10615020_SNP [dm6]	T	A	2.085e^-4	0.835	INTERGENIC
3L	14155609	3L_14155609_SNP [dm3] 3L_14162509_SNP [dm6]	T	C	2.087e^-4	0.835	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7102548	X_7102548_INS [dm3] X_7208515_INS [dm6]	A	AAAATAAAAATAAA...	2.092e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3R	25759011	3R_25759011_SNP [dm3] 3R_29933289_SNP [dm6]	G	T	2.092e^-4	0.835	UTR_5_PRIME CG42557 & 1 other UPSTREAM Cog7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20318803	3R_20318803_SNP [dm3] 3R_24493081_SNP [dm6]	G	A	2.097e^-4	0.835	INTERGENIC
2L	9608955	2L_9608955_SNP [dm3] 2L_9608955_SNP [dm6]	C	A	2.110e^-4	0.835	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14183015	3L_14183015_SNP [dm3] 3L_14189915_SNP [dm6]	A	T	2.112e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
X	18611624	X_18611624_DEL [dm3] X_18717591_DEL [dm6]	GG	G	2.113e^-4	0.835	INTRON CCKLR-17D1
3R	21329051	3R_21329051_DEL [dm3] 3R_25503329_DEL [dm6]	TTTT	T	2.116e^-4	0.835	UPSTREAM CR45651 & 1 other DOWNSTREAM CR43457 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3916604	2L_3916604_SNP [dm3] 2L_3916604_SNP [dm6]	G	T	2.123e^-4	0.835	INTRON fred
3L	10276020	3L_10276020_SNP [dm3] 3L_10282920_SNP [dm6]	T	C	2.125e^-4	0.835	INTERGENIC
3L	13207506	3L_13207506_SNP [dm3] 3L_13214406_SNP [dm6]	G	A	2.134e^-4	0.835	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26106610	3R_26106610_SNP [dm3] 3R_30280888_SNP [dm6]	C	T	2.136e^-4	0.835	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19668305	X_19668305_DEL [dm3] X_19774272_DEL [dm6]	GAAACCAAG	G	2.139e^-4	0.835	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15518770	3L_15518770_SNP [dm3] 3L_15525670_SNP [dm6]	C	T	2.141e^-4	0.835	UPSTREAM CG33986 DOWNSTREAM CG33985 INTERGENIC
2R	11836276	2R_11836276_SNP [dm3] 2R_15948771_SNP [dm6]	A	G	2.142e^-4	0.835	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10366573	3L_10366573_SNP [dm3] 3L_10373473_SNP [dm6]	T	C	2.149e^-4	0.835	INTERGENIC
3R	21465818	3R_21465818_SNP [dm3] 3R_25640096_SNP [dm6]	T	A	2.150e^-4	0.835	INTRON jigr1
3L	14155654	3L_14155654_SNP [dm3] 3L_14162554_SNP [dm6]	A	C	2.153e^-4	0.835	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17030092	2L_17030092_SNP [dm3] 2L_17030092_SNP [dm6]	A	C	2.157e^-4	0.835	INTERGENIC
2L	11476659	2L_11476659_SNP [dm3] 2L_11476659_SNP [dm6]	A	G	2.165e^-4	0.835	INTERGENIC
X	5725128	X_5725128_SNP [dm3] X_5831095_SNP [dm6]	G	C	2.165e^-4	0.835	DOWNSTREAM CR43264 INTRON CG15765
X	7056349	X_7056349_SNP [dm3] X_7162316_SNP [dm6]	T	A	2.175e^-4	0.835	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8251816	3L_8251816_SNP [dm3] 3L_8258716_SNP [dm6]	A	C	2.176e^-4	0.835	INTRON Dscam4
3L	13182492	3L_13182492_SNP [dm3] 3L_13189392_SNP [dm6]	C	A	2.176e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15377643	2L_15377643_SNP [dm3] 2L_15377643_SNP [dm6]	C	T	2.181e^-4	0.835	INTERGENIC
2L	11122747	2L_11122747_SNP [dm3] 2L_11122747_SNP [dm6]	A	C	2.189e^-4	0.835	UTR_3_PRIME Csl4	TF binding site BDTNP1_TFBS_twi
3L	2313009	3L_2313009_SNP [dm3] 3L_2313009_SNP [dm6]	G	T	2.193e^-4	0.835	INTERGENIC
3R	14832720	3R_14832720_SNP [dm3] 3R_19006998_SNP [dm6]	A	G	2.195e^-4	0.835	INTRON gukh
2R	9403278	2R_9403278_SNP [dm3] 2R_13515773_SNP [dm6]	G	A	2.196e^-4	0.835	NON_SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4717069	2R_4717069_SNP [dm3] 2R_8829564_SNP [dm6]	C	T	2.197e^-4	0.835	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16733947	3L_16733947_SNP [dm3] 3L_16740847_SNP [dm6]	G	T	2.202e^-4	0.835	INTERGENIC
3L	6224395	3L_6224395_SNP [dm3] 3L_6231295_SNP [dm6]	T	G	2.203e^-4	0.835	DOWNSTREAM CG13299 INTERGENIC
3L	14183921	3L_14183921_SNP [dm3] 3L_14190821_SNP [dm6]	A	G	2.209e^-4	0.835	UPSTREAM nuf INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2183747	2L_2183747_SNP [dm3] 2L_2183747_SNP [dm6]	T	G	2.213e^-4	0.835	EXON CR43751	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16049595	2L_16049595_SNP [dm3] 2L_16049595_SNP [dm6]	T	C	2.217e^-4	0.835	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21904999	X_21904999_MNP [dm3] X_22503163_MNP [dm6]	CGA	TTG	2.219e^-4	0.835	INTRON l_1_G0196
3L	9778095	3L_9778095_SNP [dm3] 3L_9784995_SNP [dm6]	T	C	2.222e^-4	0.835	NON_SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13207484	3L_13207484_SNP [dm3] 3L_13214384_SNP [dm6]	C	T	2.222e^-4	0.835	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11998279	X_11998279_SNP [dm3] X_12104246_SNP [dm6]	C	T	2.225e^-4	0.835	UPSTREAM CG11356 INTRON CR43960 & 1 other
3R	17158642	3R_17158642_SNP [dm3] 3R_21332920_SNP [dm6]	T	G	2.229e^-4	0.835	INTRON CG16791
2R	14808802	2R_14808802_SNP [dm3] 2R_18921297_SNP [dm6]	C	G	2.237e^-4	0.835	INTRON sano
3R	25433977	3R_25433977_SNP [dm3] 3R_29608255_SNP [dm6]	G	T	2.242e^-4	0.835	UPSTREAM Diedel2 INTRON alph
2L	5899834	2L_5899834_SNP [dm3] 2L_5899834_SNP [dm6]	G	A	2.242e^-4	0.835	DOWNSTREAM CR44579 INTERGENIC
2R	11477170	2R_11477170_SNP [dm3] 2R_15589665_SNP [dm6]	A	T	2.244e^-4	0.835	INTERGENIC
X	4895215	X_4895215_SNP [dm3] X_5001182_SNP [dm6]	A	G	2.257e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
X	5725046	X_5725046_SNP [dm3] X_5831013_SNP [dm6]	A	T	2.260e^-4	0.835	DOWNSTREAM CR43264 INTRON CG15765
3R	24870293	3R_24870293_SNP [dm3] 3R_29044571_SNP [dm6]	C	T	2.270e^-4	0.835	SYNONYMOUS_CODING Pkc98E	TF binding site mE1_TFBS_chinmo
X	4935896	X_4935896_SNP [dm3] X_5041863_SNP [dm6]	T	C	2.275e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26081751	3R_26081751_SNP [dm3] 3R_30256029_SNP [dm6]	G	T	2.278e^-4	0.835	INTERGENIC
X	7101127	X_7101127_SNP [dm3] X_7207094_SNP [dm6]	C	T	2.278e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	19907055	2L_19907055_SNP [dm3] 2L_19907055_SNP [dm6]	C	T	2.280e^-4	0.835	INTRON sick
3L	14929997	3L_14929997_DEL [dm3] 3L_14936897_DEL [dm6]	AGA	A	2.291e^-4	0.835	INTRON DCX-EMAP
2L	8283152	2L_8283152_SNP [dm3] 2L_8283152_SNP [dm6]	A	C	2.296e^-4	0.835	INTRON Btk29A
2L	4274176	2L_4274176_INS [dm3] 2L_4274176_INS [dm6]	T	TT	2.305e^-4	0.835	INTERGENIC
2L	6289739	2L_6289739_SNP [dm3] 2L_6289739_SNP [dm6]	A	G	2.308e^-4	0.835	INTRON Ddr
3L	13182496	3L_13182496_SNP [dm3] 3L_13189396_SNP [dm6]	C	A	2.309e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13182501	3L_13182501_MNP [dm3] 3L_13189401_MNP [dm6]	GAG	AGA	2.309e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11481689	2L_11481689_SNP [dm3] 2L_11481689_SNP [dm6]	A	G	2.310e^-4	0.835	INTERGENIC
3L	4200834	3L_4200834_SNP [dm3] 3L_4200834_SNP [dm6]	A	C	2.315e^-4	0.835	UTR_3_PRIME CG15005 INTRON CG43367
3L	3535752	3L_3535752_SNP [dm3] 3L_3535752_SNP [dm6]	C	A	2.321e^-4	0.835	INTRON Eip63E
3L	14183301	3L_14183301_SNP [dm3] 3L_14190201_SNP [dm6]	A	T	2.326e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
2L	15371058	2L_15371058_SNP [dm3] 2L_15371058_SNP [dm6]	C	T	2.326e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8003689	2L_8003689_SNP [dm3] 2L_8003689_SNP [dm6]	A	G	2.327e^-4	0.835	SYNONYMOUS_CODING Wwox DOWNSTREAM Spn28Dc
2L	20387621	2L_20387621_SNP [dm3] 2L_20387621_SNP [dm6]	A	C	2.330e^-4	0.835	INTRON CG10947	TF binding site mE1_TFBS_cad
3L	14183074	3L_14183074_SNP [dm3] 3L_14189974_SNP [dm6]	T	G	2.330e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	7056463	X_7056463_DEL [dm3] X_7162430_DEL [dm6]	TA	T	2.330e^-4	0.835	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12786341	3L_12786341_SNP [dm3] 3L_12793241_SNP [dm6]	G	C	2.332e^-4	0.835	INTRON Atg1 & 1 other	TF binding site mE1_TFBS_inv
2L	18919678	2L_18919678_SNP [dm3] 2L_18919678_SNP [dm6]	T	G	2.333e^-4	0.835	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
X	20686881	X_20686881_SNP [dm3] X_20815854_SNP [dm6]	T	A	2.333e^-4	0.835	INTRON shakB
3R	25760601	3R_25760601_SNP [dm3] 3R_29934879_SNP [dm6]	G	A	2.355e^-4	0.835	SYNONYMOUS_CODING eIF2B-alpha DOWNSTREAM CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17929414	2R_17929414_SNP [dm3] 2R_22041909_SNP [dm6]	C	G	2.358e^-4	0.835	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2R	16224217	2R_16224217_SNP [dm3] 2R_20336712_SNP [dm6]	G	T	2.359e^-4	0.835	INTERGENIC
3R	25876759	3R_25876759_SNP [dm3] 3R_30051037_SNP [dm6]	C	T	2.365e^-4	0.835	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18313686	2R_18313686_SNP [dm3] 2R_22426181_SNP [dm6]	G	T	2.370e^-4	0.835	SYNONYMOUS_CODING CG10344 UTR_3_PRIME CG10344 DOWNSTREAM rad50
X	6804649	X_6804649_SNP [dm3] X_6910616_SNP [dm6]	G	A	2.372e^-4	0.835	INTRON CG14431
2R	9920278	2R_9920278_SNP [dm3] 2R_14032773_SNP [dm6]	G	T	2.375e^-4	0.835	INTRON mam
3R	25876770	3R_25876770_SNP [dm3] 3R_30051048_SNP [dm6]	C	T	2.380e^-4	0.835	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5801703	3L_5801703_SNP [dm3] 3L_5808603_SNP [dm6]	C	T	2.384e^-4	0.835	INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11946333	3L_11946333_SNP [dm3] 3L_11953233_SNP [dm6]	C	A	2.385e^-4	0.835	NON_SYNONYMOUS_CODING obst-G UPSTREAM CG7248
3R	5098162	3R_5098162_SNP [dm3] 3R_9272440_SNP [dm6]	T	G	2.389e^-4	0.835	INTERGENIC
X	5605827	X_5605827_SNP [dm3] X_5711794_SNP [dm6]	A	G	2.392e^-4	0.835	SYNONYMOUS_CODING CG33080 UTR_5_PRIME CG33080
X	18285139	X_18285139_SNP [dm3] X_18391106_SNP [dm6]	A	G	2.401e^-4	0.835	SYNONYMOUS_CODING CG32549 DOWNSTREAM Tsf1	TF binding site mE1_TFBS_chinmo
3L	20914242	3L_20914242_SNP [dm3] 3L_20921142_SNP [dm6]	T	G	2.404e^-4	0.835	DOWNSTREAM CR43929 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21905016	X_21905016_SNP [dm3] X_22503180_SNP [dm6]	T	A	2.409e^-4	0.835	INTRON l_1_G0196
3R	18104808	3R_18104808_SNP [dm3] 3R_22279086_SNP [dm6]	C	T	2.410e^-4	0.835	INTRON SKIP
2L	16049596	2L_16049596_SNP [dm3] 2L_16049596_SNP [dm6]	A	T	2.419e^-4	0.835	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10329876	3L_10329876_SNP [dm3] 3L_10336776_SNP [dm6]	T	A	2.419e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
2L	7365461	2L_7365461_SNP [dm3] 2L_7365461_SNP [dm6]	G	T	2.419e^-4	0.835	INTRON Wnt10
2L	4273735	2L_4273735_SNP [dm3] 2L_4273735_SNP [dm6]	T	A	2.423e^-4	0.835	INTERGENIC
3L	16068321	3L_16068321_SNP [dm3] 3L_16075221_SNP [dm6]	A	G	2.425e^-4	0.835	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
3R	13197468	3R_13197468_SNP [dm3] 3R_17371746_SNP [dm6]	T	C	2.425e^-4	0.835	EXON CR44256
2L	10685066	2L_10685066_SNP [dm3] 2L_10685066_SNP [dm6]	G	T	2.436e^-4	0.835	UPSTREAM CG7299 INTERGENIC
2L	19906999	2L_19906999_SNP [dm3] 2L_19906999_SNP [dm6]	C	T	2.438e^-4	0.835	INTRON sick
X	7101244	X_7101244_SNP [dm3] X_7207211_SNP [dm6]	A	T	2.441e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3L	2687500	3L_2687500_SNP [dm3] 3L_2687500_SNP [dm6]	A	G	2.451e^-4	0.835	INTRON Fife
2R	12114374	2R_12114374_SNP [dm3] 2R_16226869_SNP [dm6]	A	T	2.461e^-4	0.835	UPSTREAM CG15706 INTRON CG15706 & 1 other
X	13212184	X_13212184_SNP [dm3] X_13318151_SNP [dm6]	T	G	2.463e^-4	0.835	INTRON IP3K2
3L	14923644	3L_14923644_SNP [dm3] 3L_14930544_SNP [dm6]	A	G	2.466e^-4	0.835	INTRON DCX-EMAP
2L	10643742	2L_10643742_SNP [dm3] 2L_10643742_SNP [dm6]	A	G	2.482e^-4	0.835	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3R	23163351	3R_23163351_SNP [dm3] 3R_27337629_SNP [dm6]	T	G	2.486e^-4	0.835	INTERGENIC
2R	13815693	2R_13815693_SNP [dm3] 2R_17928188_SNP [dm6]	A	C	2.486e^-4	0.835	INTERGENIC
3L	2159633	3L_2159633_SNP [dm3] 3L_2159633_SNP [dm6]	T	A	2.492e^-4	0.835	INTRON CG15822	TF binding site mE1_TFBS_inv
2L	5856267	2L_5856267_SNP [dm3] 2L_5856267_SNP [dm6]	G	A	2.493e^-4	0.835	SYNONYMOUS_CODING TrissinR
2R	18366427	2R_18366427_DEL [dm3] 2R_22478922_DEL [dm6]	ATCTACA	C	2.498e^-4	0.835	SPLICE_SITE_REGION CG4752 INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14183008	3L_14183008_SNP [dm3] 3L_14189908_SNP [dm6]	A	C	2.506e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10216810	2L_10216810_SNP [dm3] 2L_10216810_SNP [dm6]	A	G	2.508e^-4	0.835	INTRON Npc1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10504956	3R_10504956_SNP [dm3] 3R_14679234_SNP [dm6]	T	A	2.509e^-4	0.835	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3L	3278322	3L_3278322_SNP [dm3] 3L_3278322_SNP [dm6]	C	T	2.510e^-4	0.835	INTERGENIC
2L	7494272	2L_7494272_SNP [dm3] 2L_7494272_SNP [dm6]	G	A	2.512e^-4	0.835	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11478269	2L_11478269_SNP [dm3] 2L_11478269_SNP [dm6]	T	C	2.514e^-4	0.835	INTERGENIC
2L	2916497	2L_2916497_SNP [dm3] 2L_2916497_SNP [dm6]	C	T	2.521e^-4	0.835	INTRON lilli
3L	4200831	3L_4200831_SNP [dm3] 3L_4200831_SNP [dm6]	G	C	2.525e^-4	0.835	UTR_3_PRIME CG15005 INTRON CG43367
3L	2986470	3L_2986470_INS [dm3] 3L_2986470_INS [dm6]	A	AA	2.526e^-4	0.835	INTERGENIC
2R	19971527	2R_19971527_SNP [dm3] 2R_24084004_SNP [dm6]	A	G	2.526e^-4	0.835	SYNONYMOUS_CODING CG16786
2L	8346107	2L_8346107_SNP [dm3] 2L_8346107_SNP [dm6]	A	C	2.531e^-4	0.835	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12232156	2L_12232156_SNP [dm3] 2L_12232156_SNP [dm6]	C	T	2.533e^-4	0.835	INTRON aret
3L	11354952	3L_11354952_SNP [dm3] 3L_11361852_SNP [dm6]	C	T	2.533e^-4	0.835	DOWNSTREAM CG6163 INTERGENIC
3L	11641302	3L_11641302_SNP [dm3] 3L_11648202_SNP [dm6]	G	A	2.534e^-4	0.835	UPSTREAM CG7339 INTRON RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15894651	2R_15894651_DEL [dm3] 2R_20007146_DEL [dm6]	GTTTTCCG	G	2.546e^-4	0.835	EXON CR44628	TF binding site mE1_TFBS_Trl
X	4895203	X_4895203_SNP [dm3] X_5001170_SNP [dm6]	T	A	2.550e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3L	3489851	3L_3489851_SNP [dm3] 3L_3489851_SNP [dm6]	C	T	2.555e^-4	0.835	INTRON CG42324
3L	13182521	3L_13182521_SNP [dm3] 3L_13189421_SNP [dm6]	C	A	2.556e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1253389	3L_1253389_SNP [dm3] 3L_1253389_SNP [dm6]	A	T	2.558e^-4	0.835	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad
2R	17927592	2R_17927592_SNP [dm3] 2R_22040087_SNP [dm6]	C	T	2.560e^-4	0.835	UPSTREAM CG34370 INTERGENIC
3L	15605515	3L_15605515_SNP [dm3] 3L_15612415_SNP [dm6]	A	T	2.560e^-4	0.835	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449 DOWNSTREAM comm3
X	4895253	X_4895253_SNP [dm3] X_5001220_SNP [dm6]	C	T	2.565e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3R	8424949	3R_8424949_SNP [dm3] 3R_12599227_SNP [dm6]	C	T	2.566e^-4	0.835	INTERGENIC
3L	9715508	3L_9715508_SNP [dm3] 3L_9722408_SNP [dm6]	T	A	2.579e^-4	0.835	SYNONYMOUS_CODING nbs
3R	19601840	3R_19601840_SNP [dm3] 3R_23776118_SNP [dm6]	C	T	2.600e^-4	0.835	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8523138	X_8523138_SNP [dm3] X_8629105_SNP [dm6]	T	G	2.600e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	2.601e^-4	0.835	INTRON sano
2R	5381836	2R_5381836_SNP [dm3] 2R_9494331_SNP [dm6]	T	G	2.602e^-4	0.835	UTR_5_PRIME Wnt2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4671691	3R_4671691_SNP [dm3] 3R_8845969_SNP [dm6]	G	T	2.605e^-4	0.835	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	13532838	2R_13532838_SNP [dm3] 2R_17645333_SNP [dm6]	C	T	2.608e^-4	0.835	INTERGENIC
2L	14458402	2L_14458402_SNP [dm3] 2L_14458402_SNP [dm6]	G	A	2.610e^-4	0.835	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20284132	2L_20284132_SNP [dm3] 2L_20284132_SNP [dm6]	T	A	2.611e^-4	0.835	INTERGENIC
3L	5780164	3L_5780164_SNP [dm3] 3L_5787064_SNP [dm6]	C	G	2.612e^-4	0.835	UPSTREAM Cralbp INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1303845	2L_1303845_SNP [dm3] 2L_1303845_SNP [dm6]	T	C	2.615e^-4	0.835	INTERGENIC
2L	19868259	2L_19868259_SNP [dm3] 2L_19868259_SNP [dm6]	A	G	2.619e^-4	0.835	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3212917	2L_3212917_SNP [dm3] 2L_3212917_SNP [dm6]	C	A	2.619e^-4	0.835	INTERGENIC
2R	11479829	2R_11479829_SNP [dm3] 2R_15592324_SNP [dm6]	G	A	2.620e^-4	0.835	INTERGENIC
2R	17358702	2R_17358702_SNP [dm3] 2R_21471197_SNP [dm6]	C	A	2.621e^-4	0.835	INTRON Sdc
3L	13182520	3L_13182520_SNP [dm3] 3L_13189420_SNP [dm6]	C	T	2.641e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9715418	3L_9715418_SNP [dm3] 3L_9722318_SNP [dm6]	C	A	2.652e^-4	0.835	SYNONYMOUS_CODING nbs
3R	23181968	3R_23181968_SNP [dm3] 3R_27356246_SNP [dm6]	T	C	2.653e^-4	0.835	INTRON CG42534
2L	17651859	2L_17651859_SNP [dm3] 2L_17651859_SNP [dm6]	T	A	2.656e^-4	0.835	INTRON CadN
2L	11122769	2L_11122769_SNP [dm3] 2L_11122769_SNP [dm6]	G	A	2.660e^-4	0.835	UTR_3_PRIME Csl4	TF binding site BDTNP1_TFBS_twi
3L	18246173	3L_18246173_SNP [dm3] 3L_18253073_SNP [dm6]	A	C	2.667e^-4	0.835	DOWNSTREAM CheA75a INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17589724	X_17589724_SNP [dm3] X_17695691_SNP [dm6]	A	T	2.667e^-4	0.835	INTRON chas	TF binding site mE1_TFBS_bab1
2L	3598744	2L_3598744_SNP [dm3] 2L_3598744_SNP [dm6]	A	G	2.672e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4773096	3R_4773096_SNP [dm3] 3R_8947374_SNP [dm6]	C	T	2.673e^-4	0.835	INTERGENIC
3R	10504958	3R_10504958_SNP [dm3] 3R_14679236_SNP [dm6]	T	G	2.674e^-4	0.835	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
X	19254137	X_19254137_SNP [dm3] X_19360104_SNP [dm6]	T	C	2.676e^-4	0.835	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3847079	3L_3847079_SNP [dm3] 3L_3847079_SNP [dm6]	C	T	2.682e^-4	0.835	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	9423041	3L_9423041_SNP [dm3] 3L_9429941_SNP [dm6]	A	T	2.686e^-4	0.835	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11584509	2L_11584509_SNP [dm3] 2L_11584509_SNP [dm6]	G	T	2.687e^-4	0.835	DOWNSTREAM Mst33A INTRON kek2
3R	13644727	3R_13644727_SNP [dm3] 3R_17819005_SNP [dm6]	G	C	2.691e^-4	0.835	INTRON tinc
3L	8859714	3L_8859714_SNP [dm3] 3L_8866614_SNP [dm6]	T	C	2.694e^-4	0.835	INTRON dally
3L	15521714	3L_15521714_SNP [dm3] 3L_15528614_SNP [dm6]	G	T	2.702e^-4	0.835	UPSTREAM CG42728 INTRON obst-H
2R	15152931	2R_15152931_SNP [dm3] 2R_19265426_SNP [dm6]	A	G	2.708e^-4	0.835	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	5472095	X_5472095_SNP [dm3] X_5578062_SNP [dm6]	A	G	2.711e^-4	0.835	INTERGENIC
2L	11473046	2L_11473046_SNP [dm3] 2L_11473046_SNP [dm6]	T	G	2.712e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25775592	3R_25775592_SNP [dm3] 3R_29949870_SNP [dm6]	A	G	2.713e^-4	0.835	DOWNSTREAM TkR99D INTERGENIC
2L	15352577	2L_15352577_SNP [dm3] 2L_15352577_SNP [dm6]	G	A	2.719e^-4	0.835	INTERGENIC
X	19875888	X_19875888_DEL [dm3] X_19981855_DEL [dm6]	TA	T	2.720e^-4	0.835	INTERGENIC
3L	8081179	3L_8081179_SNP [dm3] 3L_8088079_SNP [dm6]	T	G	2.724e^-4	0.835	SYNONYMOUS_CODING CG7565 INTRON Ect4
2L	1128491	2L_1128491_SNP [dm3] 2L_1128491_SNP [dm6]	G	T	2.726e^-4	0.835	UPSTREAM CG4552 INTRON Pino	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8533441	X_8533441_SNP [dm3] X_8639408_SNP [dm6]	C	T	2.726e^-4	0.835	INTRON oc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	18285134	X_18285134_DEL [dm3] X_18391101_DEL [dm6]	GGAA	G	2.731e^-4	0.835	DOWNSTREAM Tsf1	TF binding site mE1_TFBS_chinmo
3L	2159692	3L_2159692_INS [dm3] 3L_2159692_INS [dm6]	C	GA	2.733e^-4	0.835	INTRON CG15822	TF binding site mE1_TFBS_inv
2L	14573395	2L_14573395_SNP [dm3] 2L_14573395_SNP [dm6]	A	T	2.744e^-4	0.835	INTERGENIC
3R	19584843	3R_19584843_SNP [dm3] 3R_23759121_SNP [dm6]	C	A	2.744e^-4	0.835	SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7943419	3L_7943419_SNP [dm3] 3L_7950319_SNP [dm6]	C	A	2.752e^-4	0.835	SYNONYMOUS_CODING exex
X	4895179	X_4895179_DEL [dm3] X_5001146_DEL [dm6]	ATTA	A	2.760e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3R	12956239	3R_12956239_SNP [dm3] 3R_17130517_SNP [dm6]	A	T	2.764e^-4	0.835	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3415668	2L_3415668_SNP [dm3] 2L_3415668_SNP [dm6]	C	A	2.765e^-4	0.835	INTRON pgant2
3L	5771500	3L_5771500_SNP [dm3] 3L_5778400_SNP [dm6]	C	T	2.766e^-4	0.835	SYNONYMOUS_CODING Myt1	TF binding site mE1_TFBS_sens
3L	4775842	3L_4775842_SNP [dm3] 3L_4775842_SNP [dm6]	A	G	2.767e^-4	0.835	INTRON RhoGEF64C
3L	8835607	3L_8835607_INS [dm3] 3L_8842507_INS [dm6]	C	TG	2.770e^-4	0.835	INTRON dally
X	5239431	X_5239431_SNP [dm3] X_5345398_SNP [dm6]	T	G	2.776e^-4	0.835	INTRON SK
2L	1162035	2L_1162035_SNP [dm3] 2L_1162035_SNP [dm6]	C	T	2.778e^-4	0.835	SYNONYMOUS_CODING CG5080	TF binding site mE1_TFBS_chinmo
X	6195576	X_6195576_SNP [dm3] X_6301543_SNP [dm6]	G	A	2.786e^-4	0.835	UPSTREAM CG12219 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	12633060	2R_12633060_SNP [dm3] 2R_16745555_SNP [dm6]	C	T	2.787e^-4	0.835	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3R	25758917	3R_25758917_SNP [dm3] 3R_29933195_SNP [dm6]	A	G	2.791e^-4	0.835	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14255653	3L_14255653_SNP [dm3] 3L_14262553_SNP [dm6]	C	G	2.791e^-4	0.835	INTERGENIC
3L	2792743	3L_2792743_SNP [dm3] 3L_2792743_SNP [dm6]	G	A	2.793e^-4	0.835	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11740837	2R_11740837_SNP [dm3] 2R_15853332_SNP [dm6]	C	A	2.794e^-4	0.835	UTR_3_PRIME tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	2.795e^-4	0.835	INTRON jigr1
X	5765616	X_5765616_SNP [dm3] X_5871583_SNP [dm6]	T	G	2.796e^-4	0.835	NON_SYNONYMOUS_CODING GAA1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13177624	3L_13177624_SNP [dm3] 3L_13184524_SNP [dm6]	C	T	2.805e^-4	0.835	INTERGENIC
3L	7937569	3L_7937569_SNP [dm3] 3L_7944469_SNP [dm6]	G	T	2.805e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14289920	2R_14289920_SNP [dm3] 2R_18402415_SNP [dm6]	A	T	2.809e^-4	0.835	UPSTREAM CR43688 & 1 other DOWNSTREAM GstE3 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14183299	3L_14183299_SNP [dm3] 3L_14190199_SNP [dm6]	G	A	2.825e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
2R	6991339	2R_6991339_INS [dm3] 2R_11103834_INS [dm6]	A	AA	2.829e^-4	0.835	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	1176965	3L_1176965_SNP [dm3] 3L_1176965_SNP [dm6]	A	T	2.832e^-4	0.835	INTRON bab2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13644722	3R_13644722_SNP [dm3] 3R_17819000_SNP [dm6]	A	T	2.841e^-4	0.835	INTRON tinc
2L	18823381	2L_18823381_SNP [dm3] 2L_18823381_SNP [dm6]	A	C	2.842e^-4	0.835	UPSTREAM CG17323 DOWNSTREAM CG17324 INTERGENIC
3L	10774083	3L_10774083_SNP [dm3] 3L_10780983_SNP [dm6]	T	C	2.842e^-4	0.835	INTERGENIC
3R	25759000	3R_25759000_SNP [dm3] 3R_29933278_SNP [dm6]	G	T	2.857e^-4	0.835	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16824827	2R_16824827_SNP [dm3] 2R_20937322_SNP [dm6]	G	A	2.859e^-4	0.835	DOWNSTREAM Rx INTERGENIC
2L	13868108	2L_13868108_SNP [dm3] 2L_13868108_SNP [dm6]	C	T	2.860e^-4	0.835	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3960697	3L_3960697_SNP [dm3] 3L_3960697_SNP [dm6]	T	C	2.863e^-4	0.835	UPSTREAM CG12605 INTRON CG12605
2L	10588935	2L_10588935_SNP [dm3] 2L_10588935_SNP [dm6]	C	A	2.867e^-4	0.835	INTRON Trim9
2R	13836550	2R_13836550_SNP [dm3] 2R_17949045_SNP [dm6]	G	A	2.891e^-4	0.835	INTERGENIC
3L	1343826	3L_1343826_SNP [dm3] 3L_1343826_SNP [dm6]	T	G	2.903e^-4	0.835	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	11356187	3R_11356187_SNP [dm3] 3R_15530465_SNP [dm6]	A	C	2.909e^-4	0.835	UTR_3_PRIME CG31296 DOWNSTREAM CG31296	TF binding site mE1_TFBS_cad
2R	11719278	2R_11719278_SNP [dm3] 2R_15831773_SNP [dm6]	G	C	2.910e^-4	0.835	INTRON tun & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	14182938	3L_14182938_DEL [dm3] 3L_14189838_DEL [dm6]	TATTTATAAAATACTTTA...	T	2.912e^-4	0.835	UPSTREAM nan INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3898962	3L_3898962_SNP [dm3] 3L_3898962_SNP [dm6]	G	A	2.914e^-4	0.835	SPLICE_SITE_REGION Ccz1 DOWNSTREAM Ubi-p63E INTRON Ccz1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	18528590	3R_18528590_SNP [dm3] 3R_22702868_SNP [dm6]	G	A	2.919e^-4	0.835	UPSTREAM CCAP INTRON CG6972
3L	14183607	3L_14183607_SNP [dm3] 3L_14190507_SNP [dm6]	A	C	2.928e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17030094	2L_17030094_SNP [dm3] 2L_17030094_SNP [dm6]	G	A	2.928e^-4	0.835	INTERGENIC
2L	19977973	2L_19977973_SNP [dm3] 2L_19977973_SNP [dm6]	A	C	2.934e^-4	0.835	UPSTREAM CR43620 INTRON CG43861
3L	14183016	3L_14183016_SNP [dm3] 3L_14189916_SNP [dm6]	A	T	2.934e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17361938	2R_17361938_SNP [dm3] 2R_21474433_SNP [dm6]	G	A	2.937e^-4	0.835	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	13670915	3R_13670915_SNP [dm3] 3R_17845193_SNP [dm6]	C	T	2.939e^-4	0.835	INTRON tinc
2L	4564234	2L_4564234_SNP [dm3] 2L_4564234_SNP [dm6]	C	T	2.941e^-4	0.835	INTRON dp	TF binding site mE1_TFBS_cad
2R	18501944	2R_18501944_SNP [dm3] 2R_22614439_SNP [dm6]	G	A	2.948e^-4	0.835	UTR_5_PRIME CG33143
3L	7937564	3L_7937564_SNP [dm3] 3L_7944464_SNP [dm6]	A	T	2.950e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_inv
3R	27833596	3R_27833596_DEL [dm3] 3R_32007874_DEL [dm6]	AA	A	2.952e^-4	0.835	INTRON heph
X	5765265	X_5765265_SNP [dm3] X_5871232_SNP [dm6]	A	G	2.956e^-4	0.835	SYNONYMOUS_CODING GAA1 DOWNSTREAM CG15764	TF binding site mE1_TFBS_cad
3R	9740676	3R_9740676_SNP [dm3] 3R_13914954_SNP [dm6]	A	T	2.961e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6272403	2L_6272403_SNP [dm3] 2L_6272403_SNP [dm6]	T	C	2.964e^-4	0.835	DOWNSTREAM CR42735 INTRON Ddr
3R	11443571	3R_11443571_SNP [dm3] 3R_15617849_SNP [dm6]	A	G	2.981e^-4	0.835	INTERGENIC
2L	17651858	2L_17651858_SNP [dm3] 2L_17651858_SNP [dm6]	T	G	2.987e^-4	0.835	INTRON CadN
2L	20283340	2L_20283340_SNP [dm3] 2L_20283340_SNP [dm6]	T	G	2.990e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10887133	2L_10887133_INS [dm3] 2L_10887133_INS [dm6]	A	ATTTTA	2.991e^-4	0.835	DOWNSTREAM CG14071 EXON CR44490	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14532886	3R_14532886_SNP [dm3] 3R_18707164_SNP [dm6]	A	G	3.001e^-4	0.835	INTRON VAChT & 1 other
3R	25858646	3R_25858646_SNP [dm3] 3R_30032924_SNP [dm6]	G	T	3.002e^-4	0.835	SPLICE_SITE_REGION Axn INTRON Axn	TF binding site mE1_TFBS_cad
2L	4261880	2L_4261880_SNP [dm3] 2L_4261880_SNP [dm6]	A	T	3.004e^-4	0.835	UPSTREAM CR44080 INTERGENIC
3R	16104266	3R_16104266_SNP [dm3] 3R_20278544_SNP [dm6]	C	G	3.008e^-4	0.835	INTRON cic	TF binding site mE1_TFBS_inv
3L	18098841	3L_18098841_INS [dm3] 3L_18105741_INS [dm6]	G	GAG	3.019e^-4	0.835	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9422995	3L_9422995_SNP [dm3] 3L_9429895_SNP [dm6]	G	T	3.019e^-4	0.835	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3713668	2L_3713668_SNP [dm3] 2L_3713668_SNP [dm6]	G	T	3.021e^-4	0.835	UTR_5_PRIME CG2818 UPSTREAM CG31955 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18033332	3R_18033332_SNP [dm3] 3R_22207610_SNP [dm6]	C	T	3.021e^-4	0.835	INTRON SKIP & 1 other
2L	20297828	2L_20297828_INS [dm3] 2L_20297828_INS [dm6]	A	AAACAATGTGGGGCAGGA...	3.027e^-4	0.835	UPSTREAM CR43414 INTERGENIC
3L	2062014	3L_2062014_SNP [dm3] 3L_2062014_SNP [dm6]	C	T	3.031e^-4	0.835	INTRON sls
3R	22405356	3R_22405356_SNP [dm3] 3R_26579634_SNP [dm6]	T	C	3.036e^-4	0.835	INTRON scrib	TF binding site mE1_TFBS_cad
3R	1011227	3R_1011227_SNP [dm3] 3R_5185505_SNP [dm6]	C	A	3.038e^-4	0.835	INTRON cno
3L	12177977	3L_12177977_SNP [dm3] 3L_12184877_SNP [dm6]	A	G	3.040e^-4	0.835	UPSTREAM CG6910 INTERGENIC
3R	25607039	3R_25607039_SNP [dm3] 3R_29781317_SNP [dm6]	G	A	3.041e^-4	0.835	UPSTREAM fig INTRON kay
X	12233358	X_12233358_SNP [dm3] X_12339325_SNP [dm6]	C	T	3.046e^-4	0.835	INTERGENIC
2L	11037880	2L_11037880_SNP [dm3] 2L_11037880_SNP [dm6]	G	C	3.050e^-4	0.835	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037883	2L_11037883_SNP [dm3] 2L_11037883_SNP [dm6]	A	G	3.050e^-4	0.835	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8094060	X_8094060_SNP [dm3] X_8200027_SNP [dm6]	C	A	3.056e^-4	0.835	INTRON sdt
2R	15431449	2R_15431449_SNP [dm3] 2R_19543944_SNP [dm6]	C	G	3.059e^-4	0.835	INTRON sm
3L	16636315	3L_16636315_SNP [dm3] 3L_16643215_SNP [dm6]	A	G	3.060e^-4	0.835	INTRON Abl
3L	8081060	3L_8081060_DEL [dm3] 3L_8087960_DEL [dm6]	ACA	A	3.060e^-4	0.835	UTR_3_PRIME CG7565 INTRON Ect4
2R	5711791	2R_5711791_SNP [dm3] 2R_9824286_SNP [dm6]	G	T	3.064e^-4	0.835	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14182930	3L_14182930_DEL [dm3] 3L_14189830_DEL [dm6]	GTGTT	G	3.093e^-4	0.835	UPSTREAM nan INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11352042	3L_11352042_DEL [dm3] 3L_11358942_DEL [dm6]	GATGGGTCGGTGGGTCG...	G	3.094e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19971533	2R_19971533_SNP [dm3] 2R_24084010_SNP [dm6]	T	G	3.095e^-4	0.835	SYNONYMOUS_CODING CG16786
3R	4671788	3R_4671788_SNP [dm3] 3R_8846066_SNP [dm6]	G	A	3.097e^-4	0.835	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	14448561	2L_14448561_DEL [dm3] 2L_14448561_DEL [dm6]	CCGTTATAAT	C	3.097e^-4	0.835	EXON CR45726	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15572075	2L_15572075_SNP [dm3] 2L_15572075_SNP [dm6]	C	G	3.100e^-4	0.835	INTRON kek3
X	22336751	X_22336751_SNP [dm3] X_22934915_SNP [dm6]	T	G	3.102e^-4	0.835	INTERGENIC
2R	18367000	2R_18367000_SNP [dm3] 2R_22479495_SNP [dm6]	A	G	3.105e^-4	0.835	INTRON CG4752
2L	10093116	2L_10093116_SNP [dm3] 2L_10093116_SNP [dm6]	G	T	3.112e^-4	0.835	UPSTREAM CG13133 & 1 other INTRON CG44153
3R	9643000	3R_9643000_SNP [dm3] 3R_13817278_SNP [dm6]	T	G	3.118e^-4	0.835	DOWNSTREAM CR43642 INTERGENIC
3R	23167257	3R_23167257_SNP [dm3] 3R_27341535_SNP [dm6]	G	T	3.126e^-4	0.835	INTRON CG42534
3R	22641190	3R_22641190_SNP [dm3] 3R_26815468_SNP [dm6]	A	G	3.132e^-4	0.835	INTRON Tl
2L	16887366	2L_16887366_SNP [dm3] 2L_16887366_SNP [dm6]	G	T	3.135e^-4	0.835	UTR_3_PRIME CG6115
3L	10639089	3L_10639089_SNP [dm3] 3L_10645989_SNP [dm6]	C	T	3.138e^-4	0.835	INTRON CG32066
2L	14448583	2L_14448583_SNP [dm3] 2L_14448583_SNP [dm6]	A	T	3.141e^-4	0.835	EXON CR45726	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5707936	3L_5707936_SNP [dm3] 3L_5714836_SNP [dm6]	T	G	3.142e^-4	0.835	DOWNSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4129711	2L_4129711_SNP [dm3] 2L_4129711_SNP [dm6]	T	C	3.149e^-4	0.835	INTERGENIC
2L	8059116	2L_8059116_SNP [dm3] 2L_8059116_SNP [dm6]	C	A	3.153e^-4	0.835	NON_SYNONYMOUS_CODING poe
X	2489010	X_2489010_SNP [dm3] X_2594977_SNP [dm6]	A	T	3.155e^-4	0.835	INTRON egh
3L	3489848	3L_3489848_SNP [dm3] 3L_3489848_SNP [dm6]	T	A	3.165e^-4	0.835	INTRON CG42324
2L	14573400	2L_14573400_SNP [dm3] 2L_14573400_SNP [dm6]	G	T	3.166e^-4	0.835	INTERGENIC
2L	14573417	2L_14573417_SNP [dm3] 2L_14573417_SNP [dm6]	T	A	3.175e^-4	0.835	INTERGENIC
2L	11553223	2L_11553223_SNP [dm3] 2L_11553223_SNP [dm6]	C	T	3.189e^-4	0.835	INTERGENIC
3R	20850098	3R_20850098_SNP [dm3] 3R_25024376_SNP [dm6]	C	T	3.195e^-4	0.835	SYNONYMOUS_CODING beta4GalT7 UPSTREAM Hr96 DOWNSTREAM CG11781	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11719281	2R_11719281_SNP [dm3] 2R_15831776_SNP [dm6]	C	G	3.195e^-4	0.835	INTRON tun & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	3726039	3L_3726039_SNP [dm3] 3L_3726039_SNP [dm6]	C	T	3.197e^-4	0.835	INTRON CG32264
3R	6714940	3R_6714940_SNP [dm3] 3R_10889218_SNP [dm6]	T	A	3.198e^-4	0.835	UTR_5_PRIME Adk3 DOWNSTREAM CG6621 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9740665	3R_9740665_SNP [dm3] 3R_13914943_SNP [dm6]	G	C	3.198e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11037893	2L_11037893_SNP [dm3] 2L_11037893_SNP [dm6]	G	A	3.199e^-4	0.835	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037896	2L_11037896_SNP [dm3] 2L_11037896_SNP [dm6]	A	G	3.202e^-4	0.835	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6985274	2R_6985274_SNP [dm3] 2R_11097769_SNP [dm6]	C	T	3.206e^-4	0.835	INTRON luna
2R	17071917	2R_17071917_SNP [dm3] 2R_21184412_SNP [dm6]	T	C	3.208e^-4	0.835	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3634717	2L_3634717_SNP [dm3] 2L_3634717_SNP [dm6]	G	A	3.210e^-4	0.835	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4306153	2L_4306153_SNP [dm3] 2L_4306153_SNP [dm6]	A	G	3.217e^-4	0.835	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	14255699	3L_14255699_SNP [dm3] 3L_14262599_SNP [dm6]	G	T	3.223e^-4	0.835	INTERGENIC
3L	14304900	3L_14304900_SNP [dm3] 3L_14311800_SNP [dm6]	A	T	3.230e^-4	0.835	INTRON fz
3L	13878374	3L_13878374_DEL [dm3] 3L_13885274_DEL [dm6]	TATGT	T	3.234e^-4	0.835	DOWNSTREAM dysc INTRON dysc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1421606	2R_1421606_SNP [dm3] 2R_5534101_SNP [dm6]	A	G	3.237e^-4	0.835	INTRON CG30438	transposable element FlyBase
2L	5948567	2L_5948567_INS [dm3] 2L_5948567_INS [dm6]	T	TGT	3.253e^-4	0.835	UTR_3_PRIME Gpdh UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13765105	2R_13765105_SNP [dm3] 2R_17877600_SNP [dm6]	C	T	3.253e^-4	0.835	UTR_3_PRIME CG30325 INTRON Elk
3R	4702805	3R_4702805_SNP [dm3] 3R_8877083_SNP [dm6]	G	A	3.260e^-4	0.835	INTRON pyd
2R	6726287	2R_6726287_SNP [dm3] 2R_10838782_SNP [dm6]	A	G	3.283e^-4	0.835	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9238468	X_9238468_SNP [dm3] X_9344435_SNP [dm6]	A	T	3.286e^-4	0.835	INTRON CG34449
2R	17924679	2R_17924679_SNP [dm3] 2R_22037174_SNP [dm6]	A	G	3.310e^-4	0.835	INTRON CG34370
X	4895205	X_4895205_SNP [dm3] X_5001172_SNP [dm6]	G	A	3.310e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3R	19600210	3R_19600210_SNP [dm3] 3R_23774488_SNP [dm6]	G	A	3.316e^-4	0.835	UTR_3_PRIME Nup98-96 UPSTREAM CG10208
3L	3904387	3L_3904387_SNP [dm3] 3L_3904387_SNP [dm6]	G	A	3.319e^-4	0.835	UPSTREAM ida INTRON Sc2
2L	6304373	2L_6304373_SNP [dm3] 2L_6304373_SNP [dm6]	C	A	3.320e^-4	0.835	INTRON Ddr
3L	14183312	3L_14183312_SNP [dm3] 3L_14190212_SNP [dm6]	A	G	3.326e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
3L	14183660	3L_14183660_SNP [dm3] 3L_14190560_SNP [dm6]	T	A	3.332e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25858639	3R_25858639_SNP [dm3] 3R_30032917_SNP [dm6]	A	T	3.342e^-4	0.835	INTRON Axn	TF binding site mE1_TFBS_cad
2R	12124163	2R_12124163_SNP [dm3] 2R_16236658_SNP [dm6]	T	G	3.342e^-4	0.835	UPSTREAM CG3687 INTERGENIC
3R	10899344	3R_10899344_SNP [dm3] 3R_15073622_SNP [dm6]	C	G	3.347e^-4	0.835	INTRON dpr9
3L	9697352	3L_9697352_SNP [dm3] 3L_9704252_SNP [dm6]	T	C	3.354e^-4	0.835	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23167246	3R_23167246_SNP [dm3] 3R_27341524_SNP [dm6]	A	G	3.362e^-4	0.835	INTRON CG42534
3R	21678110	3R_21678110_SNP [dm3] 3R_25852388_SNP [dm6]	G	A	3.365e^-4	0.835	INTRON CG5886	TF binding site mE1_TFBS_sens
2R	17294906	2R_17294906_SNP [dm3] 2R_21407401_SNP [dm6]	A	T	3.366e^-4	0.835	INTRON Sdc
2L	3101064	2L_3101064_SNP [dm3] 2L_3101064_SNP [dm6]	G	A	3.366e^-4	0.835	INTRON toc
2R	17361174	2R_17361174_SNP [dm3] 2R_21473669_SNP [dm6]	G	C	3.370e^-4	0.835	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25833677	3R_25833677_SNP [dm3] 3R_30007955_SNP [dm6]	T	G	3.376e^-4	0.835	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4333132	3R_4333132_SNP [dm3] 3R_8507410_SNP [dm6]	C	T	3.379e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8005089	3L_8005089_INS [dm3] 3L_8011989_INS [dm6]	A	ACTAATTCAAG...	3.392e^-4	0.835	INTRON nmo
2L	10824426	2L_10824426_SNP [dm3] 2L_10824426_SNP [dm6]	A	G	3.400e^-4	0.835	INTRON Nos
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	3.400e^-4	0.835	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15463196	3R_15463196_SNP [dm3] 3R_19637474_SNP [dm6]	A	G	3.400e^-4	0.835	SYNONYMOUS_CODING subdued
X	9822531	X_9822531_SNP [dm3] X_9928498_SNP [dm6]	A	G	3.403e^-4	0.835	SYNONYMOUS_CODING Idgf4
X	21905024	X_21905024_DEL [dm3] X_22503188_DEL [dm6]	CAAA	T	3.412e^-4	0.835	INTRON l_1_G0196
3L	13207526	3L_13207526_SNP [dm3] 3L_13214426_SNP [dm6]	T	C	3.416e^-4	0.835	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2209063	3L_2209063_SNP [dm3] 3L_2209063_SNP [dm6]	G	A	3.416e^-4	0.835	INTERGENIC
2L	13682442	2L_13682442_SNP [dm3] 2L_13682442_SNP [dm6]	A	T	3.432e^-4	0.835	INTRON CG31814
3R	25758963	3R_25758963_SNP [dm3] 3R_29933241_SNP [dm6]	T	C	3.439e^-4	0.835	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12033341	2R_12033341_SNP [dm3] 2R_16145836_SNP [dm6]	C	T	3.441e^-4	0.835	UTR_3_PRIME Aats-cys DOWNSTREAM Ext2
2R	14083929	2R_14083929_SNP [dm3] 2R_18196424_SNP [dm6]	C	G	3.444e^-4	0.835	INTERGENIC
X	6358559	X_6358559_INS [dm3] X_6464526_INS [dm6]	A	ATA	3.448e^-4	0.835	DOWNSTREAM CG42340 INTRON CG42340
3L	10671305	3L_10671305_SNP [dm3] 3L_10678205_SNP [dm6]	C	T	3.453e^-4	0.835	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5329430	X_5329430_SNP [dm3] X_5435397_SNP [dm6]	C	T	3.457e^-4	0.835	EXON CR44471
2R	17531937	2R_17531937_DEL [dm3] 2R_21644432_DEL [dm6]	GCTTCTGGGGGATTG...	G	3.463e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9631766	2R_9631766_SNP [dm3] 2R_13744261_SNP [dm6]	G	T	3.467e^-4	0.835	INTRON fas
X	5443518	X_5443518_SNP [dm3] X_5549485_SNP [dm6]	G	C	3.468e^-4	0.835	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10685062	2L_10685062_SNP [dm3] 2L_10685062_SNP [dm6]	C	T	3.477e^-4	0.835	UPSTREAM CG7299 INTERGENIC
X	2458351	X_2458351_SNP [dm3] X_2564318_SNP [dm6]	G	T	3.479e^-4	0.835	INTRON Pdfr
3R	13000380	3R_13000380_SNP [dm3] 3R_17174658_SNP [dm6]	G	A	3.481e^-4	0.835	INTRON Mur89F
2L	6601301	2L_6601301_SNP [dm3] 2L_6601301_SNP [dm6]	T	A	3.486e^-4	0.835	UPSTREAM CG11319 INTERGENIC
2R	3243772	2R_3243772_SNP [dm3] 2R_7356267_SNP [dm6]	T	C	3.490e^-4	0.835	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3758012	2L_3758012_SNP [dm3] 2L_3758012_SNP [dm6]	G	A	3.491e^-4	0.835	INTRON CG43707
3R	25833665	3R_25833665_SNP [dm3] 3R_30007943_SNP [dm6]	A	G	3.496e^-4	0.835	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	18011758	X_18011758_MNP [dm3] X_18117725_MNP [dm6]	ACA	TAC	3.502e^-4	0.835	UPSTREAM wupA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9819924	3L_9819924_SNP [dm3] 3L_9826824_SNP [dm6]	A	G	3.503e^-4	0.835	NON_SYNONYMOUS_CODING CG43897 INTRON CG43897
3R	27854582	3R_27854582_SNP [dm3] 3R_32028860_SNP [dm6]	G	A	3.505e^-4	0.835	INTERGENIC
X	12794509	X_12794509_SNP [dm3] X_12900476_SNP [dm6]	G	A	3.506e^-4	0.835	SYNONYMOUS_CODING CG32649 DOWNSTREAM CG4407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	22713512	3R_22713512_SNP [dm3] 3R_26887790_SNP [dm6]	C	G	3.510e^-4	0.835	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1844834	2L_1844834_SNP [dm3] 2L_1844834_SNP [dm6]	T	A	3.510e^-4	0.835	INTRON wry
X	20683366	X_20683366_SNP [dm3] X_20812339_SNP [dm6]	C	T	3.512e^-4	0.835	INTRON shakB
2R	17642719	2R_17642719_SNP [dm3] 2R_21755214_SNP [dm6]	T	C	3.513e^-4	0.835	INTERGENIC
X	7008020	X_7008020_SNP [dm3] X_7113987_SNP [dm6]	C	T	3.514e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7410446	2R_7410446_SNP [dm3] 2R_11522941_SNP [dm6]	T	A	3.524e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	14448584	2L_14448584_SNP [dm3] 2L_14448584_SNP [dm6]	A	G	3.526e^-4	0.835	EXON CR45726	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8032061	3L_8032061_SNP [dm3] 3L_8038961_SNP [dm6]	A	T	3.526e^-4	0.835	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10608038	3L_10608038_SNP [dm3] 3L_10614938_SNP [dm6]	T	C	3.527e^-4	0.835	INTERGENIC
X	9822534	X_9822534_SNP [dm3] X_9928501_SNP [dm6]	A	G	3.527e^-4	0.835	SYNONYMOUS_CODING Idgf4
3L	9795742	3L_9795742_SNP [dm3] 3L_9802642_SNP [dm6]	A	T	3.538e^-4	0.835	UPSTREAM Ilp3 DOWNSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9238470	X_9238470_SNP [dm3] X_9344437_SNP [dm6]	A	T	3.542e^-4	0.835	INTRON CG34449
X	20470519	X_20470519_DEL [dm3] X_20599492_DEL [dm6]	CC	C	3.544e^-4	0.835	INTRON RunxA
3L	7995386	3L_7995386_SNP [dm3] 3L_8002286_SNP [dm6]	T	C	3.559e^-4	0.835	INTRON nmo
X	17268953	X_17268953_SNP [dm3] X_17374920_SNP [dm6]	C	T	3.567e^-4	0.835	INTERGENIC
2L	13982367	2L_13982367_SNP [dm3] 2L_13982367_SNP [dm6]	A	T	3.574e^-4	0.835	NON_SYNONYMOUS_CODING NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18553298	2R_18553298_SNP [dm3] 2R_22665793_SNP [dm6]	G	C	3.574e^-4	0.835	UPSTREAM CR42868 DOWNSTREAM CR45269 INTRON CG42867
2R	17531970	2R_17531970_SNP [dm3] 2R_21644465_SNP [dm6]	C	G	3.575e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20288247	3R_20288247_SNP [dm3] 3R_24462525_SNP [dm6]	C	T	3.581e^-4	0.835	INTERGENIC
2L	5097863	2L_5097863_SNP [dm3] 2L_5097863_SNP [dm6]	C	T	3.582e^-4	0.835	SYNONYMOUS_CODING CG4230
X	7100187	X_7100187_SNP [dm3] X_7206154_SNP [dm6]	A	G	3.583e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA
3R	19584846	3R_19584846_SNP [dm3] 3R_23759124_SNP [dm6]	T	C	3.596e^-4	0.835	SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10462488	3L_10462488_SNP [dm3] 3L_10469388_SNP [dm6]	G	T	3.596e^-4	0.835	DOWNSTREAM S-Lap3 INTERGENIC
X	12743160	X_12743160_SNP [dm3] X_12849127_SNP [dm6]	C	A	3.611e^-4	0.835	INTRON Pde9
3R	13789531	3R_13789531_SNP [dm3] 3R_17963809_SNP [dm6]	C	T	3.613e^-4	0.835	INTRON cpo
2L	9618191	2L_9618191_INS [dm3] 2L_9618191_INS [dm6]	A	AA	3.614e^-4	0.835	INTRON GlcAT-S
2L	9618198	2L_9618198_SNP [dm3] 2L_9618198_SNP [dm6]	A	T	3.614e^-4	0.835	INTRON GlcAT-S
2L	8400857	2L_8400857_SNP [dm3] 2L_8400857_SNP [dm6]	C	A	3.616e^-4	0.835	NON_SYNONYMOUS_CODING CG31898 DOWNSTREAM CG13386 & 1 other	TF binding site mE1_TFBS_HSA
X	17268932	X_17268932_SNP [dm3] X_17374899_SNP [dm6]	C	T	3.616e^-4	0.835	INTERGENIC
3L	14183914	3L_14183914_SNP [dm3] 3L_14190814_SNP [dm6]	T	C	3.617e^-4	0.835	UPSTREAM nuf INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4218984	2L_4218984_SNP [dm3] 2L_4218984_SNP [dm6]	T	C	3.628e^-4	0.835	INTRON ft	TF binding site mE1_TFBS_HSA
2L	9335096	2L_9335096_SNP [dm3] 2L_9335096_SNP [dm6]	T	G	3.633e^-4	0.835	INTRON Eaat1
2L	17194193	2L_17194193_SNP [dm3] 2L_17194193_SNP [dm6]	A	T	3.640e^-4	0.835	INTRON beat-IIIc
3R	25758990	3R_25758990_SNP [dm3] 3R_29933268_SNP [dm6]	A	T	3.643e^-4	0.835	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17091043	3R_17091043_SNP [dm3] 3R_21265321_SNP [dm6]	T	G	3.644e^-4	0.835	DOWNSTREAM Rab1 & 1 other INTERGENIC
X	4895208	X_4895208_SNP [dm3] X_5001175_SNP [dm6]	G	T	3.653e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3L	9866398	3L_9866398_SNP [dm3] 3L_9873298_SNP [dm6]	A	C	3.661e^-4	0.835	INTERGENIC
X	18478014	X_18478014_SNP [dm3] X_18583981_SNP [dm6]	G	A	3.661e^-4	0.835	INTERGENIC
3R	14346728	3R_14346728_SNP [dm3] 3R_18521006_SNP [dm6]	T	A	3.662e^-4	0.835	INTRON fru
X	18380657	X_18380657_SNP [dm3] X_18486624_SNP [dm6]	G	A	3.666e^-4	0.835	DOWNSTREAM CG15046 INTRON psh
2L	20339762	2L_20339762_SNP [dm3] 2L_20339762_SNP [dm6]	C	T	3.685e^-4	0.835	SYNONYMOUS_CODING spir INTRON spir
3L	4775847	3L_4775847_SNP [dm3] 3L_4775847_SNP [dm6]	T	A	3.685e^-4	0.835	INTRON RhoGEF64C
X	17589352	X_17589352_SNP [dm3] X_17695319_SNP [dm6]	T	G	3.686e^-4	0.835	UPSTREAM chas INTRON chas
3L	14254673	3L_14254673_SNP [dm3] 3L_14261573_SNP [dm6]	A	G	3.688e^-4	0.835	INTERGENIC
2L	11037879	2L_11037879_SNP [dm3] 2L_11037879_SNP [dm6]	C	G	3.703e^-4	0.835	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14923610	3R_14923610_SNP [dm3] 3R_19097888_SNP [dm6]	A	G	3.709e^-4	0.835	INTRON CG6040
2L	1732685	2L_1732685_SNP [dm3] 2L_1732685_SNP [dm6]	T	C	3.711e^-4	0.835	UPSTREAM CG17652 INTRON CG17646	TF binding site BDTNP1_TFBS_dl
2L	1842661	2L_1842661_SNP [dm3] 2L_1842661_SNP [dm6]	T	G	3.712e^-4	0.835	INTRON wry
3L	14078381	3L_14078381_SNP [dm3] 3L_14085281_SNP [dm6]	G	A	3.715e^-4	0.835	NON_SYNONYMOUS_CODING CG8100
2L	19913435	2L_19913435_SNP [dm3] 2L_19913435_SNP [dm6]	G	T	3.719e^-4	0.835	INTRON sick & 1 other
2R	17924972	2R_17924972_SNP [dm3] 2R_22037467_SNP [dm6]	G	A	3.737e^-4	0.835	SYNONYMOUS_CODING CG34370
3R	16805121	3R_16805121_SNP [dm3] 3R_20979399_SNP [dm6]	A	T	3.755e^-4	0.835	INTRON Calx
X	7347487	X_7347487_DEL [dm3] X_7453454_DEL [dm6]	ACTCTGTGTCCCCGTTATAA...	A	3.763e^-4	0.835	UPSTREAM CG43198 DOWNSTREAM CG11368 INTERGENIC
2L	7365462	2L_7365462_SNP [dm3] 2L_7365462_SNP [dm6]	A	G	3.764e^-4	0.835	INTRON Wnt10
2L	13946972	2L_13946972_SNP [dm3] 2L_13946972_SNP [dm6]	T	G	3.764e^-4	0.835	INTRON Ance-3 & 1 other
3R	21675747	3R_21675747_SNP [dm3] 3R_25850025_SNP [dm6]	A	C	3.770e^-4	0.835	DOWNSTREAM CG14545 INTERGENIC
2L	19702975	2L_19702975_SNP [dm3] 2L_19702975_SNP [dm6]	T	G	3.778e^-4	0.835	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17163919	3L_17163919_SNP [dm3] 3L_17170819_SNP [dm6]	A	G	3.791e^-4	0.835	INTRON Rbp6
X	9712715	X_9712715_INS [dm3] X_9818682_INS [dm6]	A	AG	3.794e^-4	0.835	INTRON CG32698
2L	4809533	2L_4809533_SNP [dm3] 2L_4809533_SNP [dm6]	A	G	3.795e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2080452	2R_2080452_SNP [dm3] 2R_6192947_SNP [dm6]	C	G	3.807e^-4	0.835	INTRON Ptr	TF binding site BDTNP1_TFBS_dl
3R	11134972	3R_11134972_SNP [dm3] 3R_15309250_SNP [dm6]	G	T	3.814e^-4	0.835	UPSTREAM Tm2 DOWNSTREAM Tm1 INTERGENIC
2R	11984342	2R_11984342_SNP [dm3] 2R_16096837_SNP [dm6]	T	C	3.817e^-4	0.835	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22487082	3R_22487082_SNP [dm3] 3R_26661360_SNP [dm6]	C	G	3.819e^-4	0.835	INTRON beat-VII
2L	19911618	2L_19911618_SNP [dm3] 2L_19911618_SNP [dm6]	A	C	3.823e^-4	0.835	DOWNSTREAM TotF INTRON sick EXON CR43097	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13192854	3L_13192854_SNP [dm3] 3L_13199754_SNP [dm6]	A	T	3.826e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	1161255	2L_1161255_SNP [dm3] 2L_1161255_SNP [dm6]	G	C	3.831e^-4	0.835	INTRON CG5080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17532010	2R_17532010_SNP [dm3] 2R_21644505_SNP [dm6]	C	T	3.841e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7100901	X_7100901_SNP [dm3] X_7206868_SNP [dm6]	T	C	3.845e^-4	0.835	INTRON CR44357 & 1 other
2L	19995402	2L_19995402_SNP [dm3] 2L_19995402_SNP [dm6]	G	T	3.847e^-4	0.835	INTRON CG43861
2L	4759119	2L_4759119_SNP [dm3] 2L_4759119_SNP [dm6]	C	T	3.851e^-4	0.835	INTRON CG15630
3R	9635808	3R_9635808_SNP [dm3] 3R_13810086_SNP [dm6]	A	T	3.853e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16534299	3L_16534299_SNP [dm3] 3L_16541199_SNP [dm6]	G	A	3.855e^-4	0.835	INTRON CG43373
2L	20013354	2L_20013354_SNP [dm3] 2L_20013354_SNP [dm6]	A	T	3.858e^-4	0.835	INTRON CG43861
2R	18942398	2R_18942398_SNP [dm3] 2R_23054875_SNP [dm6]	G	A	3.863e^-4	0.835	UPSTREAM CG44252 INTERGENIC
2L	5815408	2L_5815408_SNP [dm3] 2L_5815408_SNP [dm6]	T	A	3.863e^-4	0.835	INTERGENIC
2R	8712814	2R_8712814_SNP [dm3] 2R_12825309_SNP [dm6]	A	G	3.878e^-4	0.835	INTERGENIC
3L	9370439	3L_9370439_SNP [dm3] 3L_9377339_SNP [dm6]	G	T	3.880e^-4	0.835	UTR_5_PRIME Hsp26 UPSTREAM CR43481 DOWNSTREAM Hsp67Ba	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20318811	3R_20318811_SNP [dm3] 3R_24493089_SNP [dm6]	A	T	3.880e^-4	0.835	INTERGENIC
3R	23022773	3R_23022773_SNP [dm3] 3R_27197051_SNP [dm6]	A	G	3.882e^-4	0.835	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	14934542	2R_14934542_SNP [dm3] 2R_19047037_SNP [dm6]	G	A	3.886e^-4	0.835	INTERGENIC
2L	4809532	2L_4809532_SNP [dm3] 2L_4809532_SNP [dm6]	A	C	3.896e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12869660	2R_12869660_SNP [dm3] 2R_16982155_SNP [dm6]	T	A	3.900e^-4	0.835	INTRON Cbp53E
3R	17310221	3R_17310221_SNP [dm3] 3R_21484499_SNP [dm6]	C	T	3.903e^-4	0.835	NON_SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16104308	3R_16104308_SNP [dm3] 3R_20278586_SNP [dm6]	A	T	3.925e^-4	0.835	INTRON cic	TF binding site mE1_TFBS_inv
3L	9682327	3L_9682327_SNP [dm3] 3L_9689227_SNP [dm6]	A	T	3.926e^-4	0.835	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24484014	3R_24484014_SNP [dm3] 3R_28658292_SNP [dm6]	G	C	3.930e^-4	0.835	INTERGENIC
3R	26181586	3R_26181586_SNP [dm3] 3R_30355864_SNP [dm6]	T	A	3.936e^-4	0.835	INTRON hdc
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	3.938e^-4	0.835	INTRON jigr1
3L	9423124	3L_9423124_SNP [dm3] 3L_9430024_SNP [dm6]	G	A	3.957e^-4	0.835	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	19512657	X_19512657_SNP [dm3] X_19618624_SNP [dm6]	T	G	3.963e^-4	0.835	UPSTREAM Tim9b & 1 other DOWNSTREAM CG14221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4800817	X_4800817_SNP [dm3] X_4906784_SNP [dm6]	G	T	3.979e^-4	0.835	UPSTREAM CG6927 DOWNSTREAM CG42594 INTERGENIC
2R	6196137	2R_6196137_SNP [dm3] 2R_10308632_SNP [dm6]	G	C	3.987e^-4	0.835	SYNONYMOUS_CODING JhI-1
3R	11402060	3R_11402060_SNP [dm3] 3R_15576338_SNP [dm6]	A	T	3.995e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	5263941	X_5263941_SNP [dm3] X_5369908_SNP [dm6]	G	T	4.000e^-4	0.835	INTRON SK
2R	16590382	2R_16590382_SNP [dm3] 2R_20702877_SNP [dm6]	A	G	4.005e^-4	0.835	INTRON dpr
2R	11399725	2R_11399725_SNP [dm3] 2R_15512220_SNP [dm6]	A	G	4.012e^-4	0.835	SYNONYMOUS_CODING GalNAc-T1
X	21905021	X_21905021_SNP [dm3] X_22503185_SNP [dm6]	T	G	4.013e^-4	0.835	INTRON l_1_G0196
3R	23117600	3R_23117600_SNP [dm3] 3R_27291878_SNP [dm6]	G	A	4.017e^-4	0.835	SYNONYMOUS_CODING CG3348 DOWNSTREAM Hmu
X	9185190	X_9185190_SNP [dm3] X_9291157_SNP [dm6]	G	T	4.018e^-4	0.835	INTRON lz	TF binding site mE1_TFBS_Kr
3R	4023574	3R_4023574_SNP [dm3] 3R_8197852_SNP [dm6]	G	A	4.019e^-4	0.835	UPSTREAM CR43302 INTERGENIC	TF binding site mE1_TFBS_sens
3R	19584789	3R_19584789_SNP [dm3] 3R_23759067_SNP [dm6]	A	T	4.022e^-4	0.835	SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	16636312	3L_16636312_SNP [dm3] 3L_16643212_SNP [dm6]	G	T	4.022e^-4	0.835	INTRON Abl
3L	8872018	3L_8872018_SNP [dm3] 3L_8878918_SNP [dm6]	C	T	4.033e^-4	0.835	INTRON dally	TF binding site mE1_TFBS_kn
3L	7897057	3L_7897057_DEL [dm3] 3L_7903957_DEL [dm6]	TA	T	4.037e^-4	0.835	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4809511	2L_4809511_SNP [dm3] 2L_4809511_SNP [dm6]	A	G	4.045e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4722867	2L_4722867_SNP [dm3] 2L_4722867_SNP [dm6]	C	T	4.049e^-4	0.835	DOWNSTREAM CG34351 INTERGENIC
2R	8293527	2R_8293527_SNP [dm3] 2R_12406022_SNP [dm6]	A	G	4.052e^-4	0.835	SYNONYMOUS_CODING Cpr49Af DOWNSTREAM Cpr49Ae
2L	19857252	2L_19857252_SNP [dm3] 2L_19857252_SNP [dm6]	G	A	4.062e^-4	0.835	INTRON sick
3R	9641574	3R_9641574_SNP [dm3] 3R_13815852_SNP [dm6]	C	T	4.070e^-4	0.835	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3243754	2R_3243754_SNP [dm3] 2R_7356249_SNP [dm6]	T	C	4.071e^-4	0.835	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9778014	3L_9778014_SNP [dm3] 3L_9784914_SNP [dm6]	G	T	4.073e^-4	0.835	INTRON CG8177	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26081792	3R_26081792_SNP [dm3] 3R_30256070_SNP [dm6]	A	C	4.078e^-4	0.835	INTERGENIC
3L	2122756	3L_2122756_INS [dm3] 3L_2122756_INS [dm6]	C	CT	4.080e^-4	0.835	UTR_3_PRIME zormin INTRON zormin
X	13416092	X_13416092_SNP [dm3] X_13522059_SNP [dm6]	T	C	4.085e^-4	0.835	INTRON Neto
3L	14183045	3L_14183045_INS [dm3] 3L_14189945_INS [dm6]	T	TCATTATTATCATTATTATA...	4.091e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6708576	3L_6708576_SNP [dm3] 3L_6715476_SNP [dm6]	A	G	4.091e^-4	0.835	INTRON ple	TF binding site mE1_TFBS_chinmo
2L	13327485	2L_13327485_SNP [dm3] 2L_13327485_SNP [dm6]	A	G	4.095e^-4	0.835	INTRON CG43778
2L	8370976	2L_8370976_SNP [dm3] 2L_8370976_SNP [dm6]	A	T	4.096e^-4	0.835	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
2L	8370978	2L_8370978_SNP [dm3] 2L_8370978_SNP [dm6]	A	T	4.096e^-4	0.835	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
2L	8370979	2L_8370979_SNP [dm3] 2L_8370979_SNP [dm6]	A	G	4.096e^-4	0.835	UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
3L	16721340	3L_16721340_DEL [dm3] 3L_16728240_DEL [dm6]	AA	A	4.103e^-4	0.835	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	26585721	3R_26585721_SNP [dm3] 3R_30759999_SNP [dm6]	T	A	4.106e^-4	0.835	INTERGENIC
2L	18413217	2L_18413217_SNP [dm3] 2L_18413217_SNP [dm6]	G	C	4.110e^-4	0.835	INTERGENIC
2L	15748975	2L_15748975_SNP [dm3] 2L_15748975_SNP [dm6]	G	T	4.110e^-4	0.835	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	3146797	2L_3146797_SNP [dm3] 2L_3146797_SNP [dm6]	G	T	4.112e^-4	0.835	UTR_3_PRIME Mad UPSTREAM CG12400
3L	7485366	3L_7485366_SNP [dm3] 3L_7492266_SNP [dm6]	A	T	4.124e^-4	0.835	NON_SYNONYMOUS_CODING Cyp316a1
3L	9423001	3L_9423001_SNP [dm3] 3L_9429901_SNP [dm6]	A	G	4.125e^-4	0.835	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2757681	2L_2757681_SNP [dm3] 2L_2757681_SNP [dm6]	A	G	4.135e^-4	0.835	UTR_3_PRIME Bacc DOWNSTREAM CR44772 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	9238472	X_9238472_SNP [dm3] X_9344439_SNP [dm6]	A	T	4.140e^-4	0.835	INTRON CG34449
X	17626269	X_17626269_DEL [dm3] X_17732236_DEL [dm6]	AAATTAAA	A	4.147e^-4	0.835	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18868086	3L_18868086_SNP [dm3] 3L_18874986_SNP [dm6]	C	T	4.149e^-4	0.835	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
2L	4560991	2L_4560991_SNP [dm3] 2L_4560991_SNP [dm6]	G	T	4.150e^-4	0.835	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10871931	3L_10871931_SNP [dm3] 3L_10878831_SNP [dm6]	A	T	4.153e^-4	0.835	NON_SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3916596	2L_3916596_SNP [dm3] 2L_3916596_SNP [dm6]	G	C	4.154e^-4	0.835	INTRON fred
2L	9182925	2L_9182925_SNP [dm3] 2L_9182925_SNP [dm6]	T	C	4.155e^-4	0.835	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9563307	2L_9563307_SNP [dm3] 2L_9563307_SNP [dm6]	C	G	4.158e^-4	0.835	INTRON jp
2R	8550730	2R_8550730_SNP [dm3] 2R_12663225_SNP [dm6]	G	A	4.160e^-4	0.835	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11641490	3L_11641490_SNP [dm3] 3L_11648390_SNP [dm6]	A	G	4.160e^-4	0.835	SPLICE_SITE_DONOR RIOK1 UTR_5_PRIME RIOK1 UPSTREAM CG7339 INTRON RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	723878	2L_723878_SNP [dm3] 2L_723878_SNP [dm6]	G	A	4.166e^-4	0.835	INTERGENIC
2R	9920279	2R_9920279_SNP [dm3] 2R_14032774_SNP [dm6]	T	C	4.168e^-4	0.835	INTRON mam
2L	14011224	2L_14011224_SNP [dm3] 2L_14011224_SNP [dm6]	T	C	4.169e^-4	0.835	UPSTREAM tRNA:Q:34E INTERGENIC
3R	20608189	3R_20608189_SNP [dm3] 3R_24782467_SNP [dm6]	C	T	4.176e^-4	0.835	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
3R	20094824	3R_20094824_SNP [dm3] 3R_24269102_SNP [dm6]	G	A	4.176e^-4	0.835	INTRON jar	TF binding site BDTNP1_TFBS_twi
3L	20461880	3L_20461880_SNP [dm3] 3L_20468780_SNP [dm6]	G	A	4.182e^-4	0.835	DOWNSTREAM CG32428 INTRON CG5955	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7319274	X_7319274_SNP [dm3] X_7425241_SNP [dm6]	A	C	4.184e^-4	0.835	UTR_3_PRIME CG32726 UPSTREAM CG15036 DOWNSTREAM CG32726
2L	11481704	2L_11481704_SNP [dm3] 2L_11481704_SNP [dm6]	A	G	4.200e^-4	0.835	INTERGENIC
3L	3532068	3L_3532068_SNP [dm3] 3L_3532068_SNP [dm6]	A	T	4.207e^-4	0.835	INTRON Eip63E
3L	7937581	3L_7937581_SNP [dm3] 3L_7944481_SNP [dm6]	G	A	4.210e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11833565	2R_11833565_SNP [dm3] 2R_15946060_SNP [dm6]	C	T	4.212e^-4	0.835	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
2L	849487	2L_849487_SNP [dm3] 2L_849487_SNP [dm6]	C	T	4.220e^-4	0.835	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3898566	3L_3898566_SNP [dm3] 3L_3898566_SNP [dm6]	A	G	4.226e^-4	0.835	SYNONYMOUS_CODING Ccz1 DOWNSTREAM Ubi-p63E	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	15855804	3L_15855804_SNP [dm3] 3L_15862704_SNP [dm6]	G	A	4.233e^-4	0.835	DOWNSTREAM pHCl INTRON pHCl
3R	25836784	3R_25836784_SNP [dm3] 3R_30011062_SNP [dm6]	G	T	4.242e^-4	0.835	SYNONYMOUS_CODING CG7920 DOWNSTREAM Nlp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	14173584	3R_14173584_SNP [dm3] 3R_18347862_SNP [dm6]	A	T	4.244e^-4	0.835	INTRON CG15803
X	4809398	X_4809398_SNP [dm3] X_4915365_SNP [dm6]	G	C	4.245e^-4	0.835	UTR_3_PRIME CG4041 DOWNSTREAM CG32772	TF binding site mE1_TFBS_cad
3R	22937637	3R_22937637_SNP [dm3] 3R_27111915_SNP [dm6]	C	A	4.246e^-4	0.835	UTR_5_PRIME gb UPSTREAM CG5815 & 1 other DOWNSTREAM CR45209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10131076	3R_10131076_SNP [dm3] 3R_14305354_SNP [dm6]	A	T	4.246e^-4	0.835	SYNONYMOUS_CODING su_Hw_ DOWNSTREAM CG3259
X	16702130	X_16702130_SNP [dm3] X_16808097_SNP [dm6]	C	T	4.248e^-4	0.835	SYNONYMOUS_CODING ppk28 EXON CR44053	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7102271	X_7102271_SNP [dm3] X_7208238_SNP [dm6]	C	T	4.248e^-4	0.835	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	3056210	2L_3056210_SNP [dm3] 2L_3056210_SNP [dm6]	T	C	4.248e^-4	0.835	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11447176	2L_11447176_SNP [dm3] 2L_11447176_SNP [dm6]	A	C	4.250e^-4	0.835	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8917698	X_8917698_SNP [dm3] X_9023665_SNP [dm6]	C	T	4.258e^-4	0.835	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17925292	2R_17925292_SNP [dm3] 2R_22037787_SNP [dm6]	T	C	4.266e^-4	0.835	INTRON CG34370
3R	10643738	3R_10643738_SNP [dm3] 3R_14818016_SNP [dm6]	G	A	4.281e^-4	0.835	NON_SYNONYMOUS_CODING btsz UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14799208	3L_14799208_SNP [dm3] 3L_14806108_SNP [dm6]	T	A	4.290e^-4	0.835	INTRON CG17839
3R	26480521	3R_26480521_SNP [dm3] 3R_30654799_SNP [dm6]	G	T	4.291e^-4	0.835	INTERGENIC
3L	5985574	3L_5985574_SNP [dm3] 3L_5992474_SNP [dm6]	G	T	4.297e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16496474	2R_16496474_SNP [dm3] 2R_20608969_SNP [dm6]	C	T	4.303e^-4	0.835	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11469070	2L_11469070_SNP [dm3] 2L_11469070_SNP [dm6]	T	C	4.315e^-4	0.835	INTERGENIC
2L	11812706	2L_11812706_SNP [dm3] 2L_11812706_SNP [dm6]	A	G	4.316e^-4	0.835	INTRON CycY
X	4800820	X_4800820_SNP [dm3] X_4906787_SNP [dm6]	A	T	4.325e^-4	0.835	UPSTREAM CG6927 DOWNSTREAM CG42594 INTERGENIC
2L	11038090	2L_11038090_SNP [dm3] 2L_11038090_SNP [dm6]	G	T	4.328e^-4	0.835	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	7105263	X_7105263_SNP [dm3] X_7211230_SNP [dm6]	C	A	4.329e^-4	0.835	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17949867	2L_17949867_SNP [dm3] 2L_17949867_SNP [dm6]	C	T	4.331e^-4	0.835	DOWNSTREAM CR44397 INTRON CR44398
3L	14183796	3L_14183796_DEL [dm3] 3L_14190696_DEL [dm6]	CT	C	4.331e^-4	0.835	UPSTREAM nuf INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10462486	3L_10462486_SNP [dm3] 3L_10469386_SNP [dm6]	A	T	4.336e^-4	0.835	DOWNSTREAM S-Lap3 INTERGENIC
3L	5119163	3L_5119163_SNP [dm3] 3L_5126063_SNP [dm6]	G	T	4.339e^-4	0.835	INTERGENIC
2R	17726258	2R_17726258_SNP [dm3] 2R_21838753_SNP [dm6]	G	A	4.344e^-4	0.835	SYNONYMOUS_CODING CG4372
3L	13701758	3L_13701758_SNP [dm3] 3L_13708658_SNP [dm6]	T	C	4.351e^-4	0.835	INTRON bru-3
3L	18849208	3L_18849208_SNP [dm3] 3L_18856108_SNP [dm6]	C	A	4.352e^-4	0.835	UPSTREAM CR45388 INTERGENIC
3R	18688952	3R_18688952_SNP [dm3] 3R_22863230_SNP [dm6]	A	T	4.353e^-4	0.835	INTERGENIC
3R	22750499	3R_22750499_SNP [dm3] 3R_26924777_SNP [dm6]	C	T	4.358e^-4	0.835	UTR_5_PRIME sda
2L	19632245	2L_19632245_SNP [dm3] 2L_19632245_SNP [dm6]	G	A	4.364e^-4	0.835	INTRON Lar
2L	11037867	2L_11037867_SNP [dm3] 2L_11037867_SNP [dm6]	G	A	4.367e^-4	0.835	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5781169	3L_5781169_SNP [dm3] 3L_5788069_SNP [dm6]	C	T	4.370e^-4	0.835	INTERGENIC
X	17667717	X_17667717_SNP [dm3] X_17773684_SNP [dm6]	A	G	4.372e^-4	0.835	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
X	4895202	X_4895202_SNP [dm3] X_5001169_SNP [dm6]	C	A	4.376e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3R	1617650	3R_1617650_SNP [dm3] 3R_5791928_SNP [dm6]	A	G	4.387e^-4	0.835	UTR_5_PRIME CG1218 DOWNSTREAM Rpn5	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3R	1949755	3R_1949755_SNP [dm3] 3R_6124033_SNP [dm6]	G	A	4.390e^-4	0.835	UTR_3_PRIME Vha14-2 DOWNSTREAM Vha14-2
3L	5991586	3L_5991586_SNP [dm3] 3L_5998486_SNP [dm6]	A	G	4.400e^-4	0.835	INTRON PVRAP
2R	16561897	2R_16561897_SNP [dm3] 2R_20674392_SNP [dm6]	T	C	4.402e^-4	0.835	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3897602	2L_3897602_SNP [dm3] 2L_3897602_SNP [dm6]	A	C	4.402e^-4	0.835	INTRON capu
2R	5281576	2R_5281576_SNP [dm3] 2R_9394071_SNP [dm6]	T	C	4.411e^-4	0.835	SYNONYMOUS_CODING l_2_03659	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8642891	3L_8642891_SNP [dm3] 3L_8649791_SNP [dm6]	G	A	4.412e^-4	0.835	SYNONYMOUS_CODING Pex7 UPSTREAM Arr2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	26772366	3R_26772366_SNP [dm3] 3R_30946644_SNP [dm6]	G	T	4.415e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3419771	3L_3419771_SNP [dm3] 3L_3419771_SNP [dm6]	T	G	4.424e^-4	0.835	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4565439	X_4565439_SNP [dm3] X_4671406_SNP [dm6]	A	G	4.430e^-4	0.835	INTRON rap
2R	12869624	2R_12869624_DEL [dm3] 2R_16982119_DEL [dm6]	ATTAT	A	4.432e^-4	0.835	INTRON Cbp53E
3R	16865783	3R_16865783_SNP [dm3] 3R_21040061_SNP [dm6]	G	A	4.437e^-4	0.835	SYNONYMOUS_CODING Dhc93AB
3L	3903392	3L_3903392_SNP [dm3] 3L_3903392_SNP [dm6]	A	T	4.452e^-4	0.835	UPSTREAM Sc2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	11307980	3L_11307980_SNP [dm3] 3L_11314880_SNP [dm6]	G	A	4.459e^-4	0.835	UPSTREAM CR44361 INTERGENIC
2L	1938249	2L_1938249_SNP [dm3] 2L_1938249_SNP [dm6]	A	C	4.463e^-4	0.835	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3078833	2L_3078833_SNP [dm3] 2L_3078833_SNP [dm6]	A	G	4.466e^-4	0.835	INTRON toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10462475	3L_10462475_SNP [dm3] 3L_10469375_SNP [dm6]	A	T	4.467e^-4	0.835	DOWNSTREAM S-Lap3 INTERGENIC
2L	13473696	2L_13473696_SNP [dm3] 2L_13473696_SNP [dm6]	T	G	4.467e^-4	0.835	INTRON CG42784
3L	11031387	3L_11031387_SNP [dm3] 3L_11038287_SNP [dm6]	A	G	4.468e^-4	0.835	SYNONYMOUS_CODING CG43693
2L	11342823	2L_11342823_DEL [dm3] 2L_11342823_DEL [dm6]	AA	T	4.478e^-4	0.835	INTRON CG14926	TF binding site mE1_TFBS_sens
3L	12022180	3L_12022180_SNP [dm3] 3L_12029080_SNP [dm6]	T	C	4.483e^-4	0.835	DOWNSTREAM CR43994 INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16609297	2R_16609297_SNP [dm3] 2R_20721792_SNP [dm6]	G	A	4.486e^-4	0.835	UPSTREAM CR44660 INTRON dpr
3R	25837871	3R_25837871_SNP [dm3] 3R_30012149_SNP [dm6]	T	G	4.490e^-4	0.835	INTRON CG7920	TF binding site mE1_TFBS_cad
3R	10326656	3R_10326656_SNP [dm3] 3R_14500934_SNP [dm6]	G	T	4.495e^-4	0.835	INTRON CR44177
X	14763121	X_14763121_SNP [dm3] X_14869088_SNP [dm6]	C	T	4.507e^-4	0.835	INTRON Flo2 & 1 other
3L	10474222	3L_10474222_SNP [dm3] 3L_10481122_SNP [dm6]	T	G	4.509e^-4	0.835	UPSTREAM A2bp1 INTERGENIC
2L	12555958	2L_12555958_INS [dm3] 2L_12555958_INS [dm6]	A	ACAATA	4.513e^-4	0.835	INTERGENIC
2R	11740729	2R_11740729_SNP [dm3] 2R_15853224_SNP [dm6]	A	G	4.517e^-4	0.835	UTR_3_PRIME tun	TF binding site mE1_TFBS_HSA
3L	3590652	3L_3590652_SNP [dm3] 3L_3590652_SNP [dm6]	T	C	4.518e^-4	0.835	INTRON Eip63E
3L	10555495	3L_10555495_SNP [dm3] 3L_10562395_SNP [dm6]	G	T	4.519e^-4	0.835	INTRON A2bp1
2R	6388363	2R_6388363_SNP [dm3] 2R_10500858_SNP [dm6]	G	A	4.522e^-4	0.835	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1514198	3L_1514198_SNP [dm3] 3L_1514198_SNP [dm6]	A	C	4.524e^-4	0.835	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15342444	2R_15342444_SNP [dm3] 2R_19454939_SNP [dm6]	A	G	4.526e^-4	0.835	SYNONYMOUS_CODING CG7744	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14068424	3L_14068424_SNP [dm3] 3L_14075324_SNP [dm6]	G	A	4.531e^-4	0.835	SYNONYMOUS_CODING Pex1 UPSTREAM btl
2R	17907364	2R_17907364_SNP [dm3] 2R_22019859_SNP [dm6]	G	A	4.531e^-4	0.835	INTRON CG34370
2L	1029933	2L_1029933_SNP [dm3] 2L_1029933_SNP [dm6]	T	C	4.533e^-4	0.835	INTRON IA-2
2R	13216533	2R_13216533_SNP [dm3] 2R_17329028_SNP [dm6]	T	A	4.534e^-4	0.835	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19911831	2L_19911831_SNP [dm3] 2L_19911831_SNP [dm6]	T	C	4.539e^-4	0.835	UTR_3_PRIME TotF UPSTREAM CR43097 INTRON sick	TF binding site mE1_TFBS_HSA
2L	13682433	2L_13682433_SNP [dm3] 2L_13682433_SNP [dm6]	G	T	4.540e^-4	0.835	INTRON CG31814
3R	23117598	3R_23117598_SNP [dm3] 3R_27291876_SNP [dm6]	T	C	4.543e^-4	0.835	SYNONYMOUS_CODING CG3348 DOWNSTREAM Hmu
2L	19913514	2L_19913514_SNP [dm3] 2L_19913514_SNP [dm6]	C	A	4.551e^-4	0.835	START_LOST Victoria INTRON sick
3R	15982260	3R_15982260_SNP [dm3] 3R_20156538_SNP [dm6]	T	A	4.553e^-4	0.835	INTERGENIC
3L	14182869	3L_14182869_SNP [dm3] 3L_14189769_SNP [dm6]	T	C	4.554e^-4	0.835	UPSTREAM nan INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5930475	2L_5930475_SNP [dm3] 2L_5930475_SNP [dm6]	A	G	4.555e^-4	0.835	INTRON dsf
X	16056469	X_16056469_SNP [dm3] X_16162436_SNP [dm6]	A	G	4.560e^-4	0.835	INTERGENIC
2R	20022330	2R_20022330_SNP [dm3] 2R_24134807_SNP [dm6]	G	A	4.567e^-4	0.835	SYNONYMOUS_CODING Zfrp8 DOWNSTREAM CG4065	TF binding site mE1_TFBS_sens
3L	3960562	3L_3960562_SNP [dm3] 3L_3960562_SNP [dm6]	A	G	4.576e^-4	0.835	UPSTREAM CG12605 INTRON CG12605
2L	15455077	2L_15455077_SNP [dm3] 2L_15455077_SNP [dm6]	T	C	4.579e^-4	0.835	INTERGENIC
3L	14183791	3L_14183791_SNP [dm3] 3L_14190691_SNP [dm6]	T	C	4.589e^-4	0.835	UPSTREAM nuf INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11594724	2L_11594724_SNP [dm3] 2L_11594724_SNP [dm6]	C	T	4.591e^-4	0.835	INTRON kek2
3L	1251952	3L_1251952_SNP [dm3] 3L_1251952_SNP [dm6]	A	T	4.593e^-4	0.835	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
2L	10886886	2L_10886886_SNP [dm3] 2L_10886886_SNP [dm6]	C	A	4.615e^-4	0.835	DOWNSTREAM CG14071 INTRON CR44490	TF binding site mE1_TFBS_inv
3L	9049660	3L_9049660_SNP [dm3] 3L_9056560_SNP [dm6]	T	A	4.616e^-4	0.835	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	8860199	3L_8860199_SNP [dm3] 3L_8867099_SNP [dm6]	G	T	4.620e^-4	0.835	INTRON dally
2L	1185535	2L_1185535_SNP [dm3] 2L_1185535_SNP [dm6]	C	T	4.630e^-4	0.835	UTR_3_PRIME Tgt UPSTREAM CG5001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10462492	3L_10462492_SNP [dm3] 3L_10469392_SNP [dm6]	A	G	4.643e^-4	0.835	DOWNSTREAM S-Lap3 INTERGENIC
2R	16748251	2R_16748251_SNP [dm3] 2R_20860746_SNP [dm6]	C	A	4.649e^-4	0.835	INTERGENIC
2R	18943066	2R_18943066_SNP [dm3] 2R_23055543_SNP [dm6]	T	C	4.655e^-4	0.835	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
2R	4223620	2R_4223620_SNP [dm3] 2R_8336115_SNP [dm6]	C	A	4.656e^-4	0.835	INTRON pdm3
3L	1197442	3L_1197442_SNP [dm3] 3L_1197442_SNP [dm6]	G	A	4.667e^-4	0.835	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14790794	3R_14790794_SNP [dm3] 3R_18965072_SNP [dm6]	T	G	4.667e^-4	0.835	INTRON CG42613 & 1 other
X	9500123	X_9500123_SNP [dm3] X_9606090_SNP [dm6]	C	T	4.678e^-4	0.835	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
3L	16406921	3L_16406921_SNP [dm3] 3L_16413821_SNP [dm6]	C	G	4.679e^-4	0.835	INTRON TMS1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13271578	3R_13271578_SNP [dm3] 3R_17445856_SNP [dm6]	G	A	4.685e^-4	0.835	DOWNSTREAM Eh INTRON CG5873
3L	12589600	3L_12589600_SNP [dm3] 3L_12596500_SNP [dm6]	G	A	4.692e^-4	0.835	DOWNSTREAM ara INTERGENIC
2R	18308333	2R_18308333_SNP [dm3] 2R_22420828_SNP [dm6]	T	C	4.704e^-4	0.835	UPSTREAM rad50 & 1 other INTERGENIC
2R	1397765	2R_1397765_SNP [dm3] 2R_5510260_SNP [dm6]	G	A	4.705e^-4	0.835	INTRON CG30438
2R	5711966	2R_5711966_SNP [dm3] 2R_9824461_SNP [dm6]	T	A	4.705e^-4	0.835	INTRON dila	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1254350	3L_1254350_SNP [dm3] 3L_1254350_SNP [dm6]	G	A	4.710e^-4	0.835	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	27805378	3R_27805378_DEL [dm3] 3R_31979656_DEL [dm6]	TGAC	T	4.713e^-4	0.835	INTRON heph & 1 other
2L	2914839	2L_2914839_SNP [dm3] 2L_2914839_SNP [dm6]	T	C	4.717e^-4	0.835	INTRON lilli
X	2292077	X_2292077_SNP [dm3] X_2398044_SNP [dm6]	A	G	4.725e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	13625205	2L_13625205_SNP [dm3] 2L_13625205_SNP [dm6]	G	T	4.737e^-4	0.835	INTRON kuz
3R	25804520	3R_25804520_SNP [dm3] 3R_29978798_SNP [dm6]	C	A	4.746e^-4	0.835	INTERGENIC
2R	17921343	2R_17921343_SNP [dm3] 2R_22033838_SNP [dm6]	G	A	4.754e^-4	0.835	INTRON CG34370
3L	17755380	3L_17755380_SNP [dm3] 3L_17762280_SNP [dm6]	A	G	4.755e^-4	0.835	NON_SYNONYMOUS_CODING CG32181 INTRON Adgf-A & 1 other
2L	7669728	2L_7669728_SNP [dm3] 2L_7669728_SNP [dm6]	G	A	4.755e^-4	0.835	INTRON Slob & 1 other
2L	9458769	2L_9458769_SNP [dm3] 2L_9458769_SNP [dm6]	G	A	4.756e^-4	0.835	INTRON numb
2R	18464700	2R_18464700_SNP [dm3] 2R_22577195_SNP [dm6]	C	T	4.772e^-4	0.835	INTRON dnr1
3L	4775825	3L_4775825_SNP [dm3] 3L_4775825_SNP [dm6]	A	T	4.781e^-4	0.835	INTRON RhoGEF64C
3R	21328957	3R_21328957_SNP [dm3] 3R_25503235_SNP [dm6]	C	T	4.781e^-4	0.835	UPSTREAM CR45651 & 1 other DOWNSTREAM CR43457 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15371007	2L_15371007_SNP [dm3] 2L_15371007_SNP [dm6]	C	T	4.785e^-4	0.835	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10666593	3L_10666593_DEL [dm3] 3L_10673493_DEL [dm6]	TGTAC	A	4.790e^-4	0.835	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9423032	3L_9423032_SNP [dm3] 3L_9429932_SNP [dm6]	G	T	4.799e^-4	0.835	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	902149	2L_902149_SNP [dm3] 2L_902149_SNP [dm6]	T	G	4.802e^-4	0.835	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3279671	3L_3279671_SNP [dm3] 3L_3279671_SNP [dm6]	G	A	4.803e^-4	0.835	UPSTREAM CG12017 INTERGENIC
X	4895218	X_4895218_DEL [dm3] X_5001185_DEL [dm6]	ATATAGAAATA...	A	4.811e^-4	0.835	INTRON CR44833	regulatory region REDfly_CRMs
3L	14183292	3L_14183292_SNP [dm3] 3L_14190192_SNP [dm6]	C	A	4.811e^-4	0.835	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
3R	1607437	3R_1607437_SNP [dm3] 3R_5781715_SNP [dm6]	C	T	4.811e^-4	0.835	UPSTREAM kat-60L1 & 1 other DOWNSTREAM jagn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14149244	2R_14149244_SNP [dm3] 2R_18261739_SNP [dm6]	A	G	4.815e^-4	0.835	INTERGENIC
2R	14149324	2R_14149324_SNP [dm3] 2R_18261819_SNP [dm6]	C	G	4.815e^-4	0.835	INTERGENIC
2L	1277417	2L_1277417_SNP [dm3] 2L_1277417_SNP [dm6]	G	A	4.819e^-4	0.835	INTRON robo3
X	10084472	X_10084472_SNP [dm3] X_10190439_SNP [dm6]	A	G	4.824e^-4	0.835	INTRON CR44894 & 1 other
3L	613806	3L_613806_SNP [dm3] 3L_613806_SNP [dm6]	A	C	4.832e^-4	0.835	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.479e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004846
In_3R_K	0.028305

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.5455	0.0139
In_3R_K	5.3753	0.068

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1855 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19512431	X_19512431_SNP [dm3] X_19618398_SNP [dm6]	T	C	2.839e^-7	0.367	DOWNSTREAM CG14221 INTRON CG12788 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19511236	X_19511236_SNP [dm3] X_19617203_SNP [dm6]	A	T	8.378e^-7	0.367	NON_SYNONYMOUS_CODING CG12788 UTR_3_PRIME Tim9b DOWNSTREAM CG14210	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13870328	2L_13870328_SNP [dm3] 2L_13870328_SNP [dm6]	A	G	9.186e^-7	0.367	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	19512499	X_19512499_SNP [dm3] X_19618466_SNP [dm6]	A	G	9.985e^-7	0.367	START_GAINED CG12788 & 1 other UTR_5_PRIME CG12788 & 1 other DOWNSTREAM CG14221	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15771568	2L_15771568_SNP [dm3] 2L_15771568_SNP [dm6]	T	G	1.108e^-6	0.367	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
3L	5274160	3L_5274160_SNP [dm3] 3L_5281060_SNP [dm6]	G	T	1.248e^-6	0.367	INTERGENIC
2R	3574351	2R_3574351_SNP [dm3] 2R_7686846_SNP [dm6]	G	A	1.371e^-6	0.367	INTRON CG1399
X	19512657	X_19512657_SNP [dm3] X_19618624_SNP [dm6]	T	G	2.001e^-6	0.469	UPSTREAM Tim9b & 1 other DOWNSTREAM CG14221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15771544	2L_15771544_SNP [dm3] 2L_15771544_SNP [dm6]	G	C	2.727e^-6	0.545	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	8524536	2L_8524536_SNP [dm3] 2L_8524536_SNP [dm6]	A	C	2.952e^-6	0.545	SYNONYMOUS_CODING Acer DOWNSTREAM lmgA & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18445238	2R_18445238_DEL [dm3] 2R_22557733_DEL [dm6]	ATA	A	3.304e^-6	0.545	INTRON px
2L	15771536	2L_15771536_SNP [dm3] 2L_15771536_SNP [dm6]	T	A	3.759e^-6	0.545	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	18391373	2R_18391373_SNP [dm3] 2R_22503868_SNP [dm6]	A	T	3.775e^-6	0.545	INTRON px
3R	10686201	3R_10686201_INS [dm3] 3R_14860479_INS [dm6]	C	CTG	4.784e^-6	0.641	INTRON btsz
X	19512632	X_19512632_SNP [dm3] X_19618599_SNP [dm6]	A	T	5.405e^-6	0.676	UPSTREAM Tim9b & 1 other DOWNSTREAM CG14221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10486518	2L_10486518_SNP [dm3] 2L_10486518_SNP [dm6]	C	T	6.019e^-6	0.702	SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23231713	3R_23231713_SNP [dm3] 3R_27405991_SNP [dm6]	C	T	6.532e^-6	0.702	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7068572	2L_7068572_SNP [dm3] 2L_7068572_SNP [dm6]	G	C	6.741e^-6	0.702	NON_SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11061038	2L_11061038_DEL [dm3] 2L_11061038_DEL [dm6]	ATCA	A	7.932e^-6	0.762	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	8740982	X_8740982_SNP [dm3] X_8846949_SNP [dm6]	A	T	8.639e^-6	0.762	INTRON CG12075
2L	10485654	2L_10485654_SNP [dm3] 2L_10485654_SNP [dm6]	T	C	8.874e^-6	0.762	SYNONYMOUS_CODING Grip75 UTR_3_PRIME CG7456
2R	18391363	2R_18391363_MNP [dm3] 2R_22503858_MNP [dm6]	GAA	TTT	9.343e^-6	0.762	INTRON px
3R	13970131	3R_13970131_SNP [dm3] 3R_18144409_SNP [dm6]	T	A	9.347e^-6	0.762	INTERGENIC
2L	15771836	2L_15771836_SNP [dm3] 2L_15771836_SNP [dm6]	A	C	1.001e^-5	0.782	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
2L	15755675	2L_15755675_SNP [dm3] 2L_15755675_SNP [dm6]	T	C	1.162e^-5	0.872	UTR_3_PRIME l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3L	9159906	3L_9159906_SNP [dm3] 3L_9166806_SNP [dm6]	G	T	1.274e^-5	0.919	INTRON Rdl
3R	16441782	3R_16441782_INS [dm3] 3R_20616060_INS [dm6]	T	TTTTAGTTTT	1.531e^-5	0.961	INTRON CG15923
3R	20830577	3R_20830577_SNP [dm3] 3R_25004855_SNP [dm6]	A	T	1.537e^-5	0.961	INTRON tnc
X	9042443	X_9042443_SNP [dm3] X_9148410_SNP [dm6]	T	C	1.580e^-5	0.961	NON_SYNONYMOUS_CODING fh SYNONYMOUS_CODING fh UPSTREAM dalao DOWNSTREAM CG7065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11227251	3L_11227251_INS [dm3] 3L_11234151_INS [dm6]	G	GG	1.602e^-5	0.961	INTRON Ir68a
2L	8283159	2L_8283159_SNP [dm3] 2L_8283159_SNP [dm6]	G	A	1.642e^-5	0.961	INTRON Btk29A
2L	15455077	2L_15455077_SNP [dm3] 2L_15455077_SNP [dm6]	T	C	1.680e^-5	0.961	INTERGENIC
2R	16414343	2R_16414343_SNP [dm3] 2R_20526838_SNP [dm6]	C	A	1.690e^-5	0.961	DOWNSTREAM CG13422 INTERGENIC
3L	8042634	3L_8042634_INS [dm3] 3L_8049534_INS [dm6]	T	TATT	1.829e^-5	0.963	INTRON nmo	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	3345137	2L_3345137_SNP [dm3] 2L_3345137_SNP [dm6]	A	T	1.888e^-5	0.963	INTRON E23
2R	1381336	2R_1381336_SNP [dm3] 2R_5493831_SNP [dm6]	G	A	1.893e^-5	0.963	INTRON CG30440
2L	12136404	2L_12136404_SNP [dm3] 2L_12136404_SNP [dm6]	T	C	1.905e^-5	0.963	INTERGENIC
3L	13604023	3L_13604023_SNP [dm3] 3L_13610923_SNP [dm6]	T	C	2.014e^-5	0.963	INTRON bru-3
2L	3348940	2L_3348940_SNP [dm3] 2L_3348940_SNP [dm6]	A	G	2.024e^-5	0.963	INTRON E23
3L	16726561	3L_16726561_SNP [dm3] 3L_16733461_SNP [dm6]	G	A	2.083e^-5	0.963	UPSTREAM CG9701 INTERGENIC
3R	24049886	3R_24049886_SNP [dm3] 3R_28224164_SNP [dm6]	G	A	2.134e^-5	0.963	INTRON CG34354
3L	2182595	3L_2182595_DEL [dm3] 3L_2182595_DEL [dm6]	CTTTTTA	C	2.163e^-5	0.963	INTERGENIC
3R	14029203	3R_14029203_SNP [dm3] 3R_18203481_SNP [dm6]	C	G	2.241e^-5	0.963	INTRON CG7985
3R	17754783	3R_17754783_SNP [dm3] 3R_21929061_SNP [dm6]	C	G	2.268e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	3764780	3L_3764780_SNP [dm3] 3L_3764780_SNP [dm6]	A	G	2.408e^-5	0.963	INTRON CG32264
3R	14888374	3R_14888374_SNP [dm3] 3R_19062652_SNP [dm6]	G	T	2.424e^-5	0.963	INTRON cdi
3R	16761953	3R_16761953_SNP [dm3] 3R_20936231_SNP [dm6]	A	G	2.653e^-5	0.963	INTRON CG31191
2L	13870199	2L_13870199_SNP [dm3] 2L_13870199_SNP [dm6]	A	G	2.712e^-5	0.963	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8875448	2R_8875448_SNP [dm3] 2R_12987943_SNP [dm6]	C	T	2.776e^-5	0.963	INTERGENIC
2L	12136200	2L_12136200_SNP [dm3] 2L_12136200_SNP [dm6]	G	A	3.010e^-5	0.963	INTERGENIC
3L	2123236	3L_2123236_SNP [dm3] 3L_2123236_SNP [dm6]	G	T	3.135e^-5	0.963	INTRON zormin
X	5275854	X_5275854_SNP [dm3] X_5381821_SNP [dm6]	G	A	3.207e^-5	0.963	INTRON SK
X	3184157	X_3184157_SNP [dm3] X_3290124_SNP [dm6]	A	C	3.234e^-5	0.963	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc
2R	16414339	2R_16414339_SNP [dm3] 2R_20526834_SNP [dm6]	C	A	3.286e^-5	0.963	DOWNSTREAM CG13422 INTERGENIC
2R	11045775	2R_11045775_SNP [dm3] 2R_15158270_SNP [dm6]	A	C	3.566e^-5	0.963	DOWNSTREAM CR43831 INTRON igl
2R	18391332	2R_18391332_DEL [dm3] 2R_22503827_DEL [dm6]	TTTCTAG	T	3.619e^-5	0.963	INTRON px
2L	15748943	2L_15748943_SNP [dm3] 2L_15748943_SNP [dm6]	C	G	3.979e^-5	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	7017289	2L_7017289_SNP [dm3] 2L_7017289_SNP [dm6]	A	T	4.096e^-5	0.963	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17444643	2L_17444643_SNP [dm3] 2L_17444643_SNP [dm6]	A	G	4.252e^-5	0.963	INTRON dl
2R	2479146	2R_2479146_SNP [dm3] 2R_6591641_SNP [dm6]	A	T	4.304e^-5	0.963	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15152946	2R_15152946_SNP [dm3] 2R_19265441_SNP [dm6]	G	C	4.322e^-5	0.963	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	13870198	2L_13870198_SNP [dm3] 2L_13870198_SNP [dm6]	G	T	4.332e^-5	0.963	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14341731	2R_14341731_SNP [dm3] 2R_18454226_SNP [dm6]	T	C	4.384e^-5	0.963	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
X	18380555	X_18380555_SNP [dm3] X_18486522_SNP [dm6]	C	T	4.404e^-5	0.963	DOWNSTREAM CG15046 INTRON psh
3L	8066656	3L_8066656_SNP [dm3] 3L_8073556_SNP [dm6]	A	G	4.414e^-5	0.963	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
2L	15757462	2L_15757462_SNP [dm3] 2L_15757462_SNP [dm6]	G	A	4.421e^-5	0.963	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15748948	2L_15748948_SNP [dm3] 2L_15748948_SNP [dm6]	G	T	4.538e^-5	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3R	10032704	3R_10032704_SNP [dm3] 3R_14206982_SNP [dm6]	T	C	4.666e^-5	0.963	INTRON Dop1R1
2L	4010822	2L_4010822_DEL [dm3] 2L_4010822_DEL [dm6]	TT	T	4.731e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18380564	X_18380564_SNP [dm3] X_18486531_SNP [dm6]	T	C	4.757e^-5	0.963	DOWNSTREAM CG15046 INTRON psh
2R	8641382	2R_8641382_SNP [dm3] 2R_12753877_SNP [dm6]	T	A	4.794e^-5	0.963	UPSTREAM mos INTRON Taz	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	3764759	3L_3764759_SNP [dm3] 3L_3764759_SNP [dm6]	C	T	4.807e^-5	0.963	INTRON CG32264
2L	15761019	2L_15761019_SNP [dm3] 2L_15761019_SNP [dm6]	T	C	4.808e^-5	0.963	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	13095108	3R_13095108_SNP [dm3] 3R_17269386_SNP [dm6]	T	A	4.876e^-5	0.963	DOWNSTREAM CR44258 INTERGENIC
2R	14278384	2R_14278384_SNP [dm3] 2R_18390879_SNP [dm6]	T	C	4.885e^-5	0.963	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	4.971e^-5	0.963	INTERGENIC
2R	18335199	2R_18335199_SNP [dm3] 2R_22447694_SNP [dm6]	C	T	5.021e^-5	0.963	INTERGENIC
2L	10982754	2L_10982754_SNP [dm3] 2L_10982754_SNP [dm6]	T	G	5.062e^-5	0.963	SYNONYMOUS_CODING piwi DOWNSTREAM SCAR
3R	10689487	3R_10689487_SNP [dm3] 3R_14863765_SNP [dm6]	A	G	5.097e^-5	0.963	INTRON btsz
2L	520004	2L_520004_SNP [dm3] 2L_520004_SNP [dm6]	T	C	5.124e^-5	0.963	INTRON ush	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16414333	2R_16414333_SNP [dm3] 2R_20526828_SNP [dm6]	C	A	5.142e^-5	0.963	DOWNSTREAM CG13422 INTERGENIC
3R	1946747	3R_1946747_SNP [dm3] 3R_6121025_SNP [dm6]	T	C	5.339e^-5	0.963	INTERGENIC
3R	13970249	3R_13970249_SNP [dm3] 3R_18144527_SNP [dm6]	C	G	5.500e^-5	0.963	INTERGENIC
3L	9724422	3L_9724422_SNP [dm3] 3L_9731322_SNP [dm6]	C	A	5.516e^-5	0.963	UTR_3_PRIME CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14341728	2R_14341728_SNP [dm3] 2R_18454223_SNP [dm6]	C	A	5.563e^-5	0.963	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
2L	11865973	2L_11865973_SNP [dm3] 2L_11865973_SNP [dm6]	T	G	5.565e^-5	0.963	INTRON Pde1c
2R	17531966	2R_17531966_SNP [dm3] 2R_21644461_SNP [dm6]	C	A	5.660e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1298917	2R_1298917_DEL [dm3] 2R_5411412_DEL [dm6]	TGGCAATAACT...	T	5.661e^-5	0.963	INTERGENIC	transposable element FlyBase
3R	16931267	3R_16931267_SNP [dm3] 3R_21105545_SNP [dm6]	A	G	5.690e^-5	0.963	SYNONYMOUS_CODING Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad
X	10497294	X_10497294_SNP [dm3] X_10603261_SNP [dm6]	C	A	5.747e^-5	0.963	UTR_3_PRIME CG43347 UPSTREAM CG1628 DOWNSTREAM CG43347	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4178492	3R_4178492_SNP [dm3] 3R_8352770_SNP [dm6]	A	G	5.757e^-5	0.963	UTR_3_PRIME Atg13
3R	26106219	3R_26106219_SNP [dm3] 3R_30280497_SNP [dm6]	G	A	5.757e^-5	0.963	INTRON hdc
2R	5665724	2R_5665724_SNP [dm3] 2R_9778219_SNP [dm6]	G	T	5.780e^-5	0.963	INTRON CG1688
3L	9872333	3L_9872333_SNP [dm3] 3L_9879233_SNP [dm6]	A	G	5.781e^-5	0.963	UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
3L	9872339	3L_9872339_SNP [dm3] 3L_9879239_SNP [dm6]	C	T	5.781e^-5	0.963	START_GAINED CG34382 UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
3L	5278128	3L_5278128_SNP [dm3] 3L_5285028_SNP [dm6]	A	T	5.798e^-5	0.963	INTERGENIC
X	16902175	X_16902175_SNP [dm3] X_17008142_SNP [dm6]	C	T	5.920e^-5	0.963	INTRON CG45002
3L	3862555	3L_3862555_SNP [dm3] 3L_3862555_SNP [dm6]	A	G	6.001e^-5	0.963	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	5665740	2R_5665740_SNP [dm3] 2R_9778235_SNP [dm6]	C	T	6.091e^-5	0.963	INTRON CG1688
2L	15748807	2L_15748807_SNP [dm3] 2L_15748807_SNP [dm6]	A	C	6.110e^-5	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15584092	X_15584092_SNP [dm3] X_15690059_SNP [dm6]	T	C	6.407e^-5	0.963	INTRON CG43132	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	18380657	X_18380657_SNP [dm3] X_18486624_SNP [dm6]	G	A	6.482e^-5	0.963	DOWNSTREAM CG15046 INTRON psh
2L	3454713	2L_3454713_SNP [dm3] 2L_3454713_SNP [dm6]	C	T	6.501e^-5	0.963	SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
3R	26181586	3R_26181586_SNP [dm3] 3R_30355864_SNP [dm6]	T	A	6.575e^-5	0.963	INTRON hdc
2R	16619346	2R_16619346_SNP [dm3] 2R_20731841_SNP [dm6]	G	T	6.613e^-5	0.963	INTRON dpr
2R	14918476	2R_14918476_SNP [dm3] 2R_19030971_SNP [dm6]	G	C	6.628e^-5	0.963	DOWNSTREAM CG43351 INTRON 5-HT1B
2L	4371314	2L_4371314_SNP [dm3] 2L_4371314_SNP [dm6]	A	C	6.636e^-5	0.963	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	10679563	3L_10679563_SNP [dm3] 3L_10686463_SNP [dm6]	C	A	6.713e^-5	0.963	INTRON simj
2R	9658017	2R_9658017_SNP [dm3] 2R_13770512_SNP [dm6]	G	A	6.768e^-5	0.963	INTRON Cpr50Ca
2L	15773584	2L_15773584_SNP [dm3] 2L_15773584_SNP [dm6]	A	G	6.822e^-5	0.963	UPSTREAM CG31826 INTERGENIC
2L	7208783	2L_7208783_SNP [dm3] 2L_7208783_SNP [dm6]	C	G	6.829e^-5	0.963	INTRON CG13784
3L	10080332	3L_10080332_SNP [dm3] 3L_10087232_SNP [dm6]	A	G	7.030e^-5	0.963	SYNONYMOUS_CODING CG14160 INTRON dpr6
3R	19300627	3R_19300627_SNP [dm3] 3R_23474905_SNP [dm6]	C	G	7.038e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	15431366	2R_15431366_SNP [dm3] 2R_19543861_SNP [dm6]	C	T	7.059e^-5	0.963	INTRON sm
3R	10689450	3R_10689450_SNP [dm3] 3R_14863728_SNP [dm6]	C	T	7.091e^-5	0.963	INTRON btsz
X	20730604	X_20730604_SNP [dm3] X_20859577_SNP [dm6]	A	G	7.230e^-5	0.963	INTRON shakB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23033248	3R_23033248_SNP [dm3] 3R_27207526_SNP [dm6]	C	T	7.255e^-5	0.963	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	7968921	3R_7968921_SNP [dm3] 3R_12143199_SNP [dm6]	A	G	7.261e^-5	0.963	INTRON dpr15
2L	6105647	2L_6105647_SNP [dm3] 2L_6105647_SNP [dm6]	A	G	7.364e^-5	0.963	INTRON stai
3R	20257065	3R_20257065_SNP [dm3] 3R_24431343_SNP [dm6]	C	A	7.402e^-5	0.963	INTRON nAChRalpha1
2L	15803532	2L_15803532_SNP [dm3] 2L_15803532_SNP [dm6]	C	T	7.435e^-5	0.963	INTERGENIC
3R	19301035	3R_19301035_SNP [dm3] 3R_23475313_SNP [dm6]	C	A	7.538e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12343488	3L_12343488_SNP [dm3] 3L_12350388_SNP [dm6]	T	C	7.557e^-5	0.963	INTRON CrzR
3L	14353093	3L_14353093_SNP [dm3] 3L_14359993_SNP [dm6]	A	G	7.662e^-5	0.963	INTRON fz
3R	12789997	3R_12789997_SNP [dm3] 3R_16964275_SNP [dm6]	G	C	7.710e^-5	0.963	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl
2L	12136333	2L_12136333_INS [dm3] 2L_12136333_INS [dm6]	T	TTTGTAAGT	7.715e^-5	0.963	INTERGENIC
3R	16670333	3R_16670333_SNP [dm3] 3R_20844611_SNP [dm6]	A	G	7.731e^-5	0.963	SYNONYMOUS_CODING CG15695	TF binding site mE1_TFBS_sens
3L	2859594	3L_2859594_SNP [dm3] 3L_2859594_SNP [dm6]	G	T	7.887e^-5	0.963	INTRON CG43444
3R	10590925	3R_10590925_SNP [dm3] 3R_14765203_SNP [dm6]	G	C	7.972e^-5	0.963	INTRON jvl
3R	20013523	3R_20013523_SNP [dm3] 3R_24187801_SNP [dm6]	G	A	8.073e^-5	0.963	UTR_3_PRIME CG5515 DOWNSTREAM CHORD	TF binding site mE1_TFBS_sens
3R	10701937	3R_10701937_SNP [dm3] 3R_14876215_SNP [dm6]	G	A	8.126e^-5	0.963	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14918315	2R_14918315_DEL [dm3] 2R_19030810_DEL [dm6]	CCTTAAAGTATGC...	C	8.257e^-5	0.963	DOWNSTREAM CG43351 INTRON 5-HT1B
3L	5442183	3L_5442183_SNP [dm3] 3L_5449083_SNP [dm6]	C	T	8.306e^-5	0.963	INTERGENIC
3L	3764737	3L_3764737_SNP [dm3] 3L_3764737_SNP [dm6]	C	T	8.322e^-5	0.963	INTRON CG32264
3R	26106216	3R_26106216_SNP [dm3] 3R_30280494_SNP [dm6]	T	A	8.453e^-5	0.963	INTRON hdc
2L	4371729	2L_4371729_SNP [dm3] 2L_4371729_SNP [dm6]	G	A	8.581e^-5	0.963	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	10689481	3R_10689481_SNP [dm3] 3R_14863759_SNP [dm6]	C	A	8.678e^-5	0.963	INTRON btsz
3L	3764728	3L_3764728_SNP [dm3] 3L_3764728_SNP [dm6]	C	T	8.720e^-5	0.963	INTRON CG32264
3L	1329562	3L_1329562_SNP [dm3] 3L_1329562_SNP [dm6]	C	T	8.727e^-5	0.963	UTR_3_PRIME Myo61F UPSTREAM mtacp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8646466	3L_8646466_SNP [dm3] 3L_8653366_SNP [dm6]	T	G	8.775e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13221139	3L_13221139_SNP [dm3] 3L_13228039_SNP [dm6]	C	T	8.813e^-5	0.963	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	16649546	3L_16649546_SNP [dm3] 3L_16656446_SNP [dm6]	T	G	8.838e^-5	0.963	INTRON Baldspot
3R	12790020	3R_12790020_SNP [dm3] 3R_16964298_SNP [dm6]	G	T	8.845e^-5	0.963	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl
2R	8641379	2R_8641379_SNP [dm3] 2R_12753874_SNP [dm6]	A	C	8.859e^-5	0.963	UPSTREAM mos INTRON Taz	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	10689491	3R_10689491_INS [dm3] 3R_14863769_INS [dm6]	A	AAAACACA	8.888e^-5	0.963	INTRON btsz
3L	18887406	3L_18887406_DEL [dm3] 3L_18894306_DEL [dm6]	AA	A	8.936e^-5	0.963	INTRON CG3902	TF binding site mE1_TFBS_cad
2L	15749014	2L_15749014_SNP [dm3] 2L_15749014_SNP [dm6]	T	C	8.983e^-5	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	18600085	2L_18600085_SNP [dm3] 2L_18600085_SNP [dm6]	G	A	9.017e^-5	0.963	UTR_3_PRIME CG10413	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	20621622	3L_20621622_SNP [dm3] 3L_20628522_SNP [dm6]	A	C	9.111e^-5	0.963	UPSTREAM CR44683 DOWNSTREAM CR44680 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	8741013	X_8741013_SNP [dm3] X_8846980_SNP [dm6]	C	T	9.159e^-5	0.963	INTRON CG12075
2R	13913115	2R_13913115_SNP [dm3] 2R_18025610_SNP [dm6]	C	T	9.203e^-5	0.963	INTERGENIC
3R	26344696	3R_26344696_SNP [dm3] 3R_30518974_SNP [dm6]	T	G	9.235e^-5	0.963	DOWNSTREAM jdp INTRON jdp
X	18380527	X_18380527_SNP [dm3] X_18486494_SNP [dm6]	A	G	9.247e^-5	0.963	DOWNSTREAM CG15046 INTRON psh
2R	10292278	2R_10292278_SNP [dm3] 2R_14404773_SNP [dm6]	A	G	9.392e^-5	0.963	INTERGENIC
X	18487537	X_18487537_SNP [dm3] X_18593504_SNP [dm6]	C	A	9.420e^-5	0.963	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14460844	3R_14460844_SNP [dm3] 3R_18635122_SNP [dm6]	T	C	9.456e^-5	0.963	INTRON qin & 1 other
3L	16731335	3L_16731335_SNP [dm3] 3L_16738235_SNP [dm6]	C	T	9.573e^-5	0.963	INTRON CG9701
3L	10679575	3L_10679575_SNP [dm3] 3L_10686475_SNP [dm6]	A	C	9.645e^-5	0.963	INTRON simj
3R	26344695	3R_26344695_SNP [dm3] 3R_30518973_SNP [dm6]	C	A	9.724e^-5	0.963	DOWNSTREAM jdp INTRON jdp
3R	10689479	3R_10689479_SNP [dm3] 3R_14863757_SNP [dm6]	A	C	9.854e^-5	0.963	INTRON btsz
3L	4096026	3L_4096026_SNP [dm3] 3L_4096026_SNP [dm6]	G	A	9.964e^-5	0.963	SYNONYMOUS_CODING CG14995 UTR_3_PRIME CG14995 INTRON CG14995	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18380526	X_18380526_SNP [dm3] X_18486493_SNP [dm6]	G	C	9.991e^-5	0.963	DOWNSTREAM CG15046 INTRON psh
2L	3348071	2L_3348071_SNP [dm3] 2L_3348071_SNP [dm6]	T	C	1.009e^-4	0.963	INTRON E23
3R	13793892	3R_13793892_SNP [dm3] 3R_17968170_SNP [dm6]	T	G	1.010e^-4	0.963	INTRON cpo
2L	15771494	2L_15771494_SNP [dm3] 2L_15771494_SNP [dm6]	C	T	1.015e^-4	0.963	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	17358608	3R_17358608_SNP [dm3] 3R_21532886_SNP [dm6]	G	C	1.018e^-4	0.963	EXON CR43372
3L	1250814	3L_1250814_SNP [dm3] 3L_1250814_SNP [dm6]	T	A	1.021e^-4	0.963	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
X	13990024	X_13990024_SNP [dm3] X_14095991_SNP [dm6]	A	G	1.023e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21054606	3R_21054606_SNP [dm3] 3R_25228884_SNP [dm6]	G	A	1.025e^-4	0.963	INTRON Cad96Cb
X	18380653	X_18380653_SNP [dm3] X_18486620_SNP [dm6]	C	T	1.031e^-4	0.963	DOWNSTREAM CG15046 INTRON psh
2L	10486566	2L_10486566_SNP [dm3] 2L_10486566_SNP [dm6]	C	T	1.036e^-4	0.963	SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15902313	2R_15902313_SNP [dm3] 2R_20014808_SNP [dm6]	C	T	1.037e^-4	0.963	DOWNSTREAM CR44629 INTERGENIC
3L	16539441	3L_16539441_SNP [dm3] 3L_16546341_SNP [dm6]	G	A	1.046e^-4	0.963	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	10586732	2L_10586732_SNP [dm3] 2L_10586732_SNP [dm6]	G	A	1.064e^-4	0.963	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1329522	3L_1329522_SNP [dm3] 3L_1329522_SNP [dm6]	A	G	1.070e^-4	0.963	UTR_3_PRIME Myo61F UPSTREAM mtacp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5107792	X_5107792_DEL [dm3] X_5213759_DEL [dm6]	GT	G	1.078e^-4	0.963	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6495349	2L_6495349_SNP [dm3] 2L_6495349_SNP [dm6]	C	T	1.079e^-4	0.963	SYNONYMOUS_CODING CG31638 UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2L	12136622	2L_12136622_DEL [dm3] 2L_12136622_DEL [dm6]	ACGAA	T	1.082e^-4	0.963	INTERGENIC
3L	10555502	3L_10555502_SNP [dm3] 3L_10562402_SNP [dm6]	T	G	1.087e^-4	0.963	INTRON A2bp1
2L	19400573	2L_19400573_SNP [dm3] 2L_19400573_SNP [dm6]	A	C	1.088e^-4	0.963	DOWNSTREAM Pax INTERGENIC
3L	3857091	3L_3857091_SNP [dm3] 3L_3857091_SNP [dm6]	G	C	1.095e^-4	0.963	INTRON Awh
3R	10590917	3R_10590917_SNP [dm3] 3R_14765195_SNP [dm6]	G	A	1.106e^-4	0.963	INTRON jvl
X	20894296	X_20894296_SNP [dm3] X_21023269_SNP [dm6]	C	G	1.115e^-4	0.963	DOWNSTREAM r-cup INTERGENIC
2R	12027794	2R_12027794_SNP [dm3] 2R_16140289_SNP [dm6]	A	G	1.120e^-4	0.963	INTRON Got1
3L	902724	3L_902724_SNP [dm3] 3L_902724_SNP [dm6]	A	T	1.138e^-4	0.963	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3L	3749846	3L_3749846_SNP [dm3] 3L_3749846_SNP [dm6]	T	G	1.145e^-4	0.963	INTRON CG32264
3L	3785856	3L_3785856_SNP [dm3] 3L_3785856_SNP [dm6]	G	T	1.146e^-4	0.963	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2122129	3L_2122129_SNP [dm3] 3L_2122129_SNP [dm6]	G	A	1.153e^-4	0.963	DOWNSTREAM zormin INTRON zormin
X	20213468	X_20213468_SNP [dm3] X_20342441_SNP [dm6]	A	C	1.159e^-4	0.963	INTERGENIC
3R	9548286	3R_9548286_DEL [dm3] 3R_13722564_DEL [dm6]	GG	G	1.161e^-4	0.963	INTRON CG34383
3R	19214579	3R_19214579_SNP [dm3] 3R_23388857_SNP [dm6]	G	A	1.164e^-4	0.963	SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15264288	2R_15264288_SNP [dm3] 2R_19376783_SNP [dm6]	C	T	1.165e^-4	0.963	SPLICE_SITE_REGION CG10062 UTR_5_PRIME CG10062 INTRON CG10062
2R	10290073	2R_10290073_SNP [dm3] 2R_14402568_SNP [dm6]	G	C	1.168e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12841377	2L_12841377_SNP [dm3] 2L_12841377_SNP [dm6]	A	C	1.171e^-4	0.963	UPSTREAM CR44971 DOWNSTREAM CR44970 INTERGENIC
3R	19214558	3R_19214558_SNP [dm3] 3R_23388836_SNP [dm6]	C	A	1.180e^-4	0.963	NON_SYNONYMOUS_CODING CG31515	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8646468	3L_8646468_SNP [dm3] 3L_8653368_SNP [dm6]	C	T	1.193e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4721738	3L_4721738_SNP [dm3] 3L_4721738_SNP [dm6]	C	A	1.193e^-4	0.963	INTRON RhoGEF64C
3R	24049896	3R_24049896_SNP [dm3] 3R_28224174_SNP [dm6]	A	G	1.196e^-4	0.963	INTRON CG34354
2L	10796559	2L_10796559_SNP [dm3] 2L_10796559_SNP [dm6]	G	A	1.212e^-4	0.963	INTRON CG31869
3L	17628366	3L_17628366_SNP [dm3] 3L_17635266_SNP [dm6]	T	C	1.215e^-4	0.963	INTRON CG7497
2R	5665771	2R_5665771_SNP [dm3] 2R_9778266_SNP [dm6]	T	G	1.216e^-4	0.963	INTRON CG1688
3L	3764743	3L_3764743_SNP [dm3] 3L_3764743_SNP [dm6]	A	C	1.221e^-4	0.963	INTRON CG32264
3R	10591833	3R_10591833_SNP [dm3] 3R_14766111_SNP [dm6]	T	C	1.223e^-4	0.963	INTRON jvl
2R	17531937	2R_17531937_DEL [dm3] 2R_21644432_DEL [dm6]	GCTTCTGGGGGATTG...	G	1.226e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18464748	2R_18464748_SNP [dm3] 2R_22577243_SNP [dm6]	C	T	1.227e^-4	0.963	INTRON dnr1
2R	17904605	2R_17904605_SNP [dm3] 2R_22017100_SNP [dm6]	G	A	1.236e^-4	0.963	INTRON CG34370
2L	415803	2L_415803_SNP [dm3] 2L_415803_SNP [dm6]	A	T	1.240e^-4	0.963	NON_SYNONYMOUS_CODING ebi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	10486572	2L_10486572_SNP [dm3] 2L_10486572_SNP [dm6]	C	T	1.240e^-4	0.963	SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6283518	2R_6283518_SNP [dm3] 2R_10396013_SNP [dm6]	G	A	1.242e^-4	0.963	UPSTREAM CG42732 INTRON CG42732
X	6087472	X_6087472_SNP [dm3] X_6193439_SNP [dm6]	T	A	1.244e^-4	0.963	UPSTREAM Ca-alpha1T INTERGENIC
X	5254242	X_5254242_SNP [dm3] X_5360209_SNP [dm6]	A	T	1.246e^-4	0.963	INTRON SK
2R	5108103	2R_5108103_SNP [dm3] 2R_9220598_SNP [dm6]	T	C	1.260e^-4	0.963	INTERGENIC
3R	19300699	3R_19300699_SNP [dm3] 3R_23474977_SNP [dm6]	T	A	1.260e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	9657987	2R_9657987_SNP [dm3] 2R_13770482_SNP [dm6]	C	A	1.260e^-4	0.963	INTRON Cpr50Ca
2R	3792823	2R_3792823_SNP [dm3] 2R_7905318_SNP [dm6]	A	C	1.261e^-4	0.963	INTRON CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13381591	3R_13381591_SNP [dm3] 3R_17555869_SNP [dm6]	C	A	1.275e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3626826	3L_3626826_SNP [dm3] 3L_3626826_SNP [dm6]	G	A	1.284e^-4	0.963	UTR_5_PRIME dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1251098	3L_1251098_SNP [dm3] 3L_1251098_SNP [dm6]	C	T	1.286e^-4	0.963	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	18920097	2L_18920097_SNP [dm3] 2L_18920097_SNP [dm6]	A	G	1.287e^-4	0.963	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14165293	3R_14165293_SNP [dm3] 3R_18339571_SNP [dm6]	T	C	1.293e^-4	0.963	INTRON CG15803
3L	10080401	3L_10080401_SNP [dm3] 3L_10087301_SNP [dm6]	C	T	1.293e^-4	0.963	SYNONYMOUS_CODING CG14160 INTRON dpr6	TF binding site mE1_TFBS_cad
2R	8851612	2R_8851612_SNP [dm3] 2R_12964107_SNP [dm6]	T	C	1.298e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7964712	2L_7964712_SNP [dm3] 2L_7964712_SNP [dm6]	A	G	1.300e^-4	0.963	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11228939	3L_11228939_SNP [dm3] 3L_11235839_SNP [dm6]	C	T	1.304e^-4	0.963	NON_SYNONYMOUS_CODING Ir68a DOWNSTREAM CR44718	TF binding site BDTNP1_TFBS_dl
2R	14296491	2R_14296491_SNP [dm3] 2R_18408986_SNP [dm6]	T	A	1.308e^-4	0.963	UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other INTERGENIC
2L	14430274	2L_14430274_SNP [dm3] 2L_14430274_SNP [dm6]	T	G	1.309e^-4	0.963	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15245807	3R_15245807_SNP [dm3] 3R_19420085_SNP [dm6]	C	A	1.312e^-4	0.963	INTRON CG31221
2R	11741837	2R_11741837_SNP [dm3] 2R_15854332_SNP [dm6]	C	T	1.320e^-4	0.963	UTR_3_PRIME tun DOWNSTREAM tun
2R	6184017	2R_6184017_SNP [dm3] 2R_10296512_SNP [dm6]	G	C	1.342e^-4	0.963	NON_SYNONYMOUS_CODING CAP INTRON CAP
3R	10689462	3R_10689462_SNP [dm3] 3R_14863740_SNP [dm6]	G	C	1.351e^-4	0.963	INTRON btsz
3L	12346886	3L_12346886_SNP [dm3] 3L_12353786_SNP [dm6]	C	T	1.353e^-4	0.963	INTERGENIC
2R	14296374	2R_14296374_SNP [dm3] 2R_18408869_SNP [dm6]	G	T	1.374e^-4	0.963	UTR_3_PRIME GstE8 UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other
2L	13598322	2L_13598322_SNP [dm3] 2L_13598322_SNP [dm6]	G	C	1.389e^-4	0.963	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10555499	3L_10555499_SNP [dm3] 3L_10562399_SNP [dm6]	A	T	1.408e^-4	0.963	INTRON A2bp1
2L	10350032	2L_10350032_SNP [dm3] 2L_10350032_SNP [dm6]	A	T	1.409e^-4	0.963	INTRON CG34367
X	20213518	X_20213518_SNP [dm3] X_20342491_SNP [dm6]	T	C	1.409e^-4	0.963	INTERGENIC
3L	7527272	3L_7527272_SNP [dm3] 3L_7534172_SNP [dm6]	A	G	1.410e^-4	0.963	SPLICE_SITE_REGION lqf INTRON lqf	TF binding site mE1_TFBS_chinmo
2L	8993597	2L_8993597_SNP [dm3] 2L_8993597_SNP [dm6]	T	A	1.417e^-4	0.963	UTR_3_PRIME CG9555 UPSTREAM CG17906 DOWNSTREAM alien
X	5443743	X_5443743_SNP [dm3] X_5549710_SNP [dm6]	A	G	1.426e^-4	0.963	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2182063	3L_2182063_DEL [dm3] 3L_2182063_DEL [dm6]	GATC	G	1.435e^-4	0.963	INTERGENIC
2R	8878843	2R_8878843_SNP [dm3] 2R_12991338_SNP [dm6]	A	T	1.438e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15245823	3R_15245823_SNP [dm3] 3R_19420101_SNP [dm6]	C	T	1.438e^-4	0.963	INTRON CG31221
3R	14520617	3R_14520617_SNP [dm3] 3R_18694895_SNP [dm6]	T	G	1.446e^-4	0.963	UPSTREAM CG34282 INTERGENIC
2L	4170174	2L_4170174_SNP [dm3] 2L_4170174_SNP [dm6]	C	T	1.461e^-4	0.963	INTERGENIC
2R	7273906	2R_7273906_SNP [dm3] 2R_11386401_SNP [dm6]	C	A	1.462e^-4	0.963	SYNONYMOUS_CODING sprt DOWNSTREAM CG30022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13166863	3R_13166863_SNP [dm3] 3R_17341141_SNP [dm6]	T	A	1.477e^-4	0.963	INTRON beat-IIa
3R	22334392	3R_22334392_SNP [dm3] 3R_26508670_SNP [dm6]	T	A	1.485e^-4	0.963	INTRON plum
3L	8066548	3L_8066548_SNP [dm3] 3L_8073448_SNP [dm6]	A	G	1.486e^-4	0.963	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17708351	3L_17708351_SNP [dm3] 3L_17715251_SNP [dm6]	T	C	1.495e^-4	0.963	INTRON Ccn
3R	19300787	3R_19300787_SNP [dm3] 3R_23475065_SNP [dm6]	T	G	1.505e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	5542352	3L_5542352_SNP [dm3] 3L_5549252_SNP [dm6]	A	G	1.506e^-4	0.963	INTRON CG10625
3L	10080404	3L_10080404_SNP [dm3] 3L_10087304_SNP [dm6]	A	G	1.507e^-4	0.963	SYNONYMOUS_CODING CG14160 INTRON dpr6	TF binding site mE1_TFBS_cad
3R	10689483	3R_10689483_INS [dm3] 3R_14863761_INS [dm6]	C	CT	1.509e^-4	0.963	INTRON btsz
3L	10555504	3L_10555504_DEL [dm3] 3L_10562404_DEL [dm6]	AAC	A	1.510e^-4	0.963	INTRON A2bp1
2L	6398618	2L_6398618_SNP [dm3] 2L_6398618_SNP [dm6]	C	A	1.512e^-4	0.963	INTRON CG42368
2R	14290170	2R_14290170_SNP [dm3] 2R_18402665_SNP [dm6]	G	C	1.515e^-4	0.963	UPSTREAM GstE4 DOWNSTREAM CR43687 EXON CR43688	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18391279	2R_18391279_DEL [dm3] 2R_22503774_DEL [dm6]	AA	A	1.521e^-4	0.963	INTRON px
2L	15748981	2L_15748981_SNP [dm3] 2L_15748981_SNP [dm6]	G	T	1.522e^-4	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	9386773	2L_9386773_SNP [dm3] 2L_9386773_SNP [dm6]	C	T	1.535e^-4	0.963	UPSTREAM Aldh INTRON Shawl
2R	8895410	2R_8895410_SNP [dm3] 2R_13007905_SNP [dm6]	G	T	1.536e^-4	0.963	UTR_3_PRIME Su_z_2 DOWNSTREAM Su_z_2	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	19057211	2R_19057211_SNP [dm3] 2R_23169688_SNP [dm6]	A	G	1.536e^-4	0.963	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13578011	2L_13578011_SNP [dm3] 2L_13578011_SNP [dm6]	G	A	1.542e^-4	0.963	INTRON kuz
2L	7067724	2L_7067724_SNP [dm3] 2L_7067724_SNP [dm6]	G	C	1.553e^-4	0.963	UPSTREAM CG11289 INTERGENIC
2R	11399725	2R_11399725_SNP [dm3] 2R_15512220_SNP [dm6]	A	G	1.555e^-4	0.963	SYNONYMOUS_CODING GalNAc-T1
2R	18391474	2R_18391474_SNP [dm3] 2R_22503969_SNP [dm6]	A	G	1.563e^-4	0.963	INTRON px
2L	11299202	2L_11299202_SNP [dm3] 2L_11299202_SNP [dm6]	A	T	1.587e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4286989	X_4286989_SNP [dm3] X_4392956_SNP [dm6]	C	G	1.596e^-4	0.963	INTRON CR32773
2L	4010981	2L_4010981_DEL [dm3] 2L_4010981_DEL [dm6]	CAC	A	1.600e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21054631	3R_21054631_SNP [dm3] 3R_25228909_SNP [dm6]	C	T	1.608e^-4	0.963	INTRON Cad96Cb
2L	5966335	2L_5966335_SNP [dm3] 2L_5966335_SNP [dm6]	A	G	1.639e^-4	0.963	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4085168	2L_4085168_SNP [dm3] 2L_4085168_SNP [dm6]	A	G	1.648e^-4	0.963	UPSTREAM snoRNA:Me28S-C437 INTRON ed
X	8094070	X_8094070_SNP [dm3] X_8200037_SNP [dm6]	T	C	1.649e^-4	0.963	INTRON sdt
3L	11178047	3L_11178047_SNP [dm3] 3L_11184947_SNP [dm6]	T	G	1.649e^-4	0.963	INTRON GlcAT-P
3L	13221134	3L_13221134_SNP [dm3] 3L_13228034_SNP [dm6]	A	G	1.658e^-4	0.963	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	13793867	3R_13793867_SNP [dm3] 3R_17968145_SNP [dm6]	C	A	1.662e^-4	0.963	INTRON cpo
2L	15359747	2L_15359747_SNP [dm3] 2L_15359747_SNP [dm6]	A	G	1.665e^-4	0.963	INTERGENIC
3R	17168408	3R_17168408_SNP [dm3] 3R_21342686_SNP [dm6]	T	G	1.677e^-4	0.963	SYNONYMOUS_CODING CG16791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12136178	2L_12136178_SNP [dm3] 2L_12136178_SNP [dm6]	G	A	1.678e^-4	0.963	INTERGENIC
2L	16361225	2L_16361225_INS [dm3] 2L_16361225_INS [dm6]	A	AA	1.690e^-4	0.963	INTERGENIC
2R	5102671	2R_5102671_SNP [dm3] 2R_9215166_SNP [dm6]	T	A	1.694e^-4	0.963	DOWNSTREAM CR44451 INTERGENIC
3L	5542342	3L_5542342_INS [dm3] 3L_5549242_INS [dm6]	G	GT	1.696e^-4	0.963	INTRON CG10625
2L	10019459	2L_10019459_SNP [dm3] 2L_10019459_SNP [dm6]	A	G	1.699e^-4	0.963	INTERGENIC
2R	15921589	2R_15921589_SNP [dm3] 2R_20034084_SNP [dm6]	T	A	1.704e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3R	11603555	3R_11603555_SNP [dm3] 3R_15777833_SNP [dm6]	C	T	1.711e^-4	0.963	DOWNSTREAM CG4525 INTERGENIC
3L	13221262	3L_13221262_SNP [dm3] 3L_13228162_SNP [dm6]	C	G	1.711e^-4	0.963	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	8427039	2R_8427039_SNP [dm3] 2R_12539534_SNP [dm6]	T	A	1.713e^-4	0.963	INTRON fra
3L	18891220	3L_18891220_SNP [dm3] 3L_18898120_SNP [dm6]	G	A	1.721e^-4	0.963	UPSTREAM RpL26 INTRON CG3902
2L	13870039	2L_13870039_SNP [dm3] 2L_13870039_SNP [dm6]	G	C	1.741e^-4	0.963	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	5107789	X_5107789_SNP [dm3] X_5213756_SNP [dm6]	A	G	1.743e^-4	0.963	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3749967	3L_3749967_SNP [dm3] 3L_3749967_SNP [dm6]	G	T	1.752e^-4	0.963	INTRON CG32264
2L	3348956	2L_3348956_SNP [dm3] 2L_3348956_SNP [dm6]	T	C	1.753e^-4	0.963	INTRON E23
2L	16375745	2L_16375745_SNP [dm3] 2L_16375745_SNP [dm6]	G	A	1.763e^-4	0.963	INTERGENIC
2L	12136659	2L_12136659_SNP [dm3] 2L_12136659_SNP [dm6]	T	A	1.764e^-4	0.963	INTERGENIC
2L	8168153	2L_8168153_SNP [dm3] 2L_8168153_SNP [dm6]	T	A	1.773e^-4	0.963	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12136407	2L_12136407_SNP [dm3] 2L_12136407_SNP [dm6]	C	A	1.784e^-4	0.963	INTERGENIC
3L	16721475	3L_16721475_SNP [dm3] 3L_16728375_SNP [dm6]	C	T	1.790e^-4	0.963	UPSTREAM PGRP-SB1 DOWNSTREAM Dbp73D INTERGENIC	regulatory region REDfly_CRMs
3L	14614795	3L_14614795_SNP [dm3] 3L_14621695_SNP [dm6]	A	G	1.795e^-4	0.963	UTR_3_PRIME shd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
2L	5899834	2L_5899834_SNP [dm3] 2L_5899834_SNP [dm6]	G	A	1.799e^-4	0.963	DOWNSTREAM CR44579 INTERGENIC
3R	19300605	3R_19300605_SNP [dm3] 3R_23474883_SNP [dm6]	G	A	1.801e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19719329	2R_19719329_SNP [dm3] 2R_23831806_SNP [dm6]	T	A	1.806e^-4	0.963	INTRON CG5549
2R	4531465	2R_4531465_SNP [dm3] 2R_8643960_SNP [dm6]	A	C	1.812e^-4	0.963	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9658046	2R_9658046_SNP [dm3] 2R_13770541_SNP [dm6]	T	A	1.814e^-4	0.963	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA
3L	8810253	3L_8810253_SNP [dm3] 3L_8817153_SNP [dm6]	T	A	1.819e^-4	0.963	INTERGENIC
2R	8878603	2R_8878603_SNP [dm3] 2R_12991098_SNP [dm6]	A	T	1.825e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	13689870	2R_13689870_SNP [dm3] 2R_17802365_SNP [dm6]	G	A	1.831e^-4	0.963	UTR_5_PRIME grh UPSTREAM CR45270 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	5877840	3L_5877840_DEL [dm3] 3L_5884740_DEL [dm6]	AAA	A	1.832e^-4	0.963	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	11981510	3R_11981510_SNP [dm3] 3R_16155788_SNP [dm6]	C	T	1.833e^-4	0.963	INTRON CG6006	TF binding site mE1_TFBS_cad
2L	8993759	2L_8993759_SNP [dm3] 2L_8993759_SNP [dm6]	C	T	1.843e^-4	0.963	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
2L	11532987	2L_11532987_SNP [dm3] 2L_11532987_SNP [dm6]	C	T	1.844e^-4	0.963	SYNONYMOUS_CODING CG34162 EXON CR42743
3L	10555500	3L_10555500_SNP [dm3] 3L_10562400_SNP [dm6]	T	A	1.847e^-4	0.963	INTRON A2bp1
X	8514961	X_8514961_INS [dm3] X_8620928_INS [dm6]	C	CC	1.852e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2182116	3L_2182116_SNP [dm3] 3L_2182116_SNP [dm6]	G	T	1.855e^-4	0.963	INTERGENIC
X	8440002	X_8440002_SNP [dm3] X_8545969_SNP [dm6]	A	G	1.858e^-4	0.963	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13852627	3R_13852627_SNP [dm3] 3R_18026905_SNP [dm6]	G	T	1.867e^-4	0.963	INTERGENIC
2R	19352739	2R_19352739_SNP [dm3] 2R_23465216_SNP [dm6]	A	T	1.869e^-4	0.963	INTRON CG43795
2R	9657939	2R_9657939_SNP [dm3] 2R_13770434_SNP [dm6]	T	A	1.871e^-4	0.963	INTRON Cpr50Ca
3L	9368179	3L_9368179_INS [dm3] 3L_9375079_INS [dm6]	T	TACCAT	1.886e^-4	0.963	UPSTREAM CG4461 DOWNSTREAM Hsp22 & 1 other INTERGENIC
3L	2122714	3L_2122714_SNP [dm3] 3L_2122714_SNP [dm6]	T	C	1.887e^-4	0.963	UTR_3_PRIME zormin INTRON zormin
2L	15748960	2L_15748960_SNP [dm3] 2L_15748960_SNP [dm6]	A	T	1.890e^-4	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	14175248	2L_14175248_DEL [dm3] 2L_14175248_DEL [dm6]	ACAGCC	A	1.912e^-4	0.963	INTRON CG43333
2R	14670087	2R_14670087_SNP [dm3] 2R_18782582_SNP [dm6]	A	C	1.914e^-4	0.963	UPSTREAM CG15080 INTERGENIC
2R	9141017	2R_9141017_SNP [dm3] 2R_13253512_SNP [dm6]	T	C	1.917e^-4	0.963	SYNONYMOUS_CODING CG4714 DOWNSTREAM CR44343	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14341770	2R_14341770_SNP [dm3] 2R_18454265_SNP [dm6]	C	T	1.924e^-4	0.963	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
2L	5457327	2L_5457327_SNP [dm3] 2L_5457327_SNP [dm6]	G	A	1.935e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
X	13991729	X_13991729_SNP [dm3] X_14097696_SNP [dm6]	G	A	1.937e^-4	0.963	INTERGENIC
3L	12655515	3L_12655515_SNP [dm3] 3L_12662415_SNP [dm6]	T	C	1.944e^-4	0.963	DOWNSTREAM CR44552 INTERGENIC
2L	3390805	2L_3390805_SNP [dm3] 2L_3390805_SNP [dm6]	C	G	1.947e^-4	0.963	INTERGENIC
2R	4208625	2R_4208625_SNP [dm3] 2R_8321120_SNP [dm6]	G	A	1.949e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	15770110	2L_15770110_SNP [dm3] 2L_15770110_SNP [dm6]	G	A	1.955e^-4	0.963	SYNONYMOUS_CODING Ku80
2L	3634717	2L_3634717_SNP [dm3] 2L_3634717_SNP [dm6]	G	A	1.961e^-4	0.963	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6058697	3L_6058697_SNP [dm3] 3L_6065597_SNP [dm6]	T	G	1.972e^-4	0.963	UPSTREAM CG42269 INTERGENIC
3R	14511809	3R_14511809_SNP [dm3] 3R_18686087_SNP [dm6]	G	A	1.976e^-4	0.963	UTR_3_PRIME CG7708 DOWNSTREAM CG7708
2R	13801917	2R_13801917_SNP [dm3] 2R_17914412_SNP [dm6]	C	T	1.978e^-4	0.963	INTRON Elk
2L	12136400	2L_12136400_SNP [dm3] 2L_12136400_SNP [dm6]	C	A	1.981e^-4	0.963	INTERGENIC
3L	14058013	3L_14058013_SNP [dm3] 3L_14064913_SNP [dm6]	C	T	1.990e^-4	0.963	INTRON CG32138
2R	8851769	2R_8851769_SNP [dm3] 2R_12964264_SNP [dm6]	G	C	1.992e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17532000	2R_17532000_SNP [dm3] 2R_21644495_SNP [dm6]	T	C	1.994e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18583948	2L_18583948_SNP [dm3] 2L_18583948_SNP [dm6]	G	C	1.994e^-4	0.963	INTRON Pde11	transposable element FlyBase
3L	10731397	3L_10731397_SNP [dm3] 3L_10738297_SNP [dm6]	A	C	1.995e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10233222	2R_10233222_SNP [dm3] 2R_14345717_SNP [dm6]	C	T	2.003e^-4	0.963	INTRON Shroom
3R	23960535	3R_23960535_SNP [dm3] 3R_28134813_SNP [dm6]	T	C	2.014e^-4	0.963	INTERGENIC
2L	3272700	2L_3272700_SNP [dm3] 2L_3272700_SNP [dm6]	G	T	2.016e^-4	0.963	DOWNSTREAM CG3347 INTERGENIC
3L	12346841	3L_12346841_SNP [dm3] 3L_12353741_SNP [dm6]	G	A	2.017e^-4	0.963	INTERGENIC
2L	16329299	2L_16329299_INS [dm3] 2L_16329299_INS [dm6]	T	TATTATAT	2.028e^-4	0.963	UPSTREAM CG4440 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1258398	3L_1258398_SNP [dm3] 3L_1258398_SNP [dm6]	T	A	2.031e^-4	0.963	INTRON CG9134
3L	2628959	3L_2628959_SNP [dm3] 3L_2628959_SNP [dm6]	A	T	2.036e^-4	0.963	DOWNSTREAM CR45660 INTRON Pxn
3R	25876759	3R_25876759_SNP [dm3] 3R_30051037_SNP [dm6]	C	T	2.036e^-4	0.963	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19906366	X_19906366_SNP [dm3] X_20012333_SNP [dm6]	T	C	2.040e^-4	0.963	INTRON Dop2R
2R	7545108	2R_7545108_SNP [dm3] 2R_11657603_SNP [dm6]	C	A	2.054e^-4	0.963	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13577988	2L_13577988_SNP [dm3] 2L_13577988_SNP [dm6]	T	C	2.057e^-4	0.963	INTRON kuz
3R	26456423	3R_26456423_SNP [dm3] 3R_30630701_SNP [dm6]	C	T	2.067e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9740676	3R_9740676_SNP [dm3] 3R_13914954_SNP [dm6]	A	T	2.072e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18852785	3L_18852785_SNP [dm3] 3L_18859685_SNP [dm6]	A	G	2.072e^-4	0.963	INTERGENIC
3L	9058523	3L_9058523_SNP [dm3] 3L_9065423_SNP [dm6]	G	T	2.084e^-4	0.963	INTRON Argk	TF binding site mE1_TFBS_bab1
2L	19235422	2L_19235422_SNP [dm3] 2L_19235422_SNP [dm6]	C	T	2.097e^-4	0.963	INTERGENIC
2R	10289524	2R_10289524_SNP [dm3] 2R_14402019_SNP [dm6]	A	G	2.101e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8890084	2R_8890084_SNP [dm3] 2R_13002579_SNP [dm6]	C	T	2.114e^-4	0.963	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16381467	2R_16381467_SNP [dm3] 2R_20493962_SNP [dm6]	C	T	2.118e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11227242	3L_11227242_SNP [dm3] 3L_11234142_SNP [dm6]	C	A	2.139e^-4	0.963	INTRON Ir68a
X	5107798	X_5107798_SNP [dm3] X_5213765_SNP [dm6]	A	C	2.143e^-4	0.963	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26338468	3R_26338468_SNP [dm3] 3R_30512746_SNP [dm6]	C	T	2.155e^-4	0.963	UPSTREAM PH4alphaNE2 INTRON CG31524	TF binding site mE1_TFBS_HSA
X	18380758	X_18380758_SNP [dm3] X_18486725_SNP [dm6]	G	C	2.161e^-4	0.963	UTR_5_PRIME psh DOWNSTREAM CG15046
3R	26181654	3R_26181654_SNP [dm3] 3R_30355932_SNP [dm6]	A	C	2.166e^-4	0.963	INTRON hdc
2R	18110131	2R_18110131_SNP [dm3] 2R_22222626_SNP [dm6]	A	G	2.188e^-4	0.963	INTRON Oatp58Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6314212	2R_6314212_SNP [dm3] 2R_10426707_SNP [dm6]	T	C	2.189e^-4	0.963	DOWNSTREAM CG12896 INTERGENIC	transposable element FlyBase
2R	19835412	2R_19835412_SNP [dm3] 2R_23947889_SNP [dm6]	T	C	2.190e^-4	0.963	UTR_3_PRIME CG13565 DOWNSTREAM Galphas INTRON CG13565
X	3141273	X_3141273_SNP [dm3] X_3247240_SNP [dm6]	A	G	2.191e^-4	0.963	INTRON dnc
3L	11037394	3L_11037394_SNP [dm3] 3L_11044294_SNP [dm6]	A	G	2.201e^-4	0.963	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2R	3676861	2R_3676861_SNP [dm3] 2R_7789356_SNP [dm6]	A	G	2.207e^-4	0.963	NON_SYNONYMOUS_CODING CG12825 SPLICE_SITE_REGION CG12825 DOWNSTREAM CanB2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11295725	2R_11295725_SNP [dm3] 2R_15408220_SNP [dm6]	C	T	2.210e^-4	0.963	UPSTREAM Mtk INTRON CG43729
2R	14292991	2R_14292991_SNP [dm3] 2R_18405486_SNP [dm6]	C	T	2.216e^-4	0.963	UPSTREAM GstE6 DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	14149244	2R_14149244_SNP [dm3] 2R_18261739_SNP [dm6]	A	G	2.218e^-4	0.963	INTERGENIC
2R	14149324	2R_14149324_SNP [dm3] 2R_18261819_SNP [dm6]	C	G	2.218e^-4	0.963	INTERGENIC
3L	1176279	3L_1176279_SNP [dm3] 3L_1176279_SNP [dm6]	A	T	2.220e^-4	0.963	INTRON bab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16359613	2L_16359613_SNP [dm3] 2L_16359613_SNP [dm6]	A	C	2.224e^-4	0.963	INTERGENIC
2L	10859173	2L_10859173_SNP [dm3] 2L_10859173_SNP [dm6]	C	G	2.226e^-4	0.963	INTRON Stam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20208515	2R_20208515_SNP [dm3] 2R_24320992_SNP [dm6]	G	T	2.231e^-4	0.963	INTERGENIC
2L	8993604	2L_8993604_SNP [dm3] 2L_8993604_SNP [dm6]	G	A	2.235e^-4	0.963	UTR_3_PRIME CG9555 UPSTREAM CG17906 DOWNSTREAM alien
3L	4665332	3L_4665332_SNP [dm3] 3L_4665332_SNP [dm6]	T	C	2.238e^-4	0.963	DOWNSTREAM CG32236 INTRON axo
3L	19902516	3L_19902516_SNP [dm3] 3L_19909416_SNP [dm6]	T	C	2.248e^-4	0.963	UPSTREAM Prp3 & 1 other INTRON Mi-2 EXON CR43889	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6314235	2R_6314235_DEL [dm3] 2R_10426730_DEL [dm6]	TGAACGCTGCTATGCGACTT...	T	2.249e^-4	0.963	DOWNSTREAM CG12896 INTERGENIC	transposable element FlyBase
2R	4603878	2R_4603878_SNP [dm3] 2R_8716373_SNP [dm6]	C	T	2.269e^-4	0.963	UPSTREAM PGRP-SC2 INTERGENIC
3L	15157693	3L_15157693_SNP [dm3] 3L_15164593_SNP [dm6]	G	A	2.270e^-4	0.963	UPSTREAM CG7011 INTERGENIC
X	2260273	X_2260273_SNP [dm3] X_2366240_SNP [dm6]	A	G	2.290e^-4	0.963	UTR_5_PRIME ptr DOWNSTREAM PsGEF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6011886	2L_6011886_SNP [dm3] 2L_6011886_SNP [dm6]	G	A	2.292e^-4	0.963	SYNONYMOUS_CODING CG9098 UTR_5_PRIME CG9098 UPSTREAM CG9098	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2183127	3L_2183127_SNP [dm3] 3L_2183127_SNP [dm6]	C	T	2.296e^-4	0.963	INTERGENIC
3R	26191188	3R_26191188_SNP [dm3] 3R_30365466_SNP [dm6]	C	A	2.304e^-4	0.963	UTR_3_PRIME hdc
3L	12217472	3L_12217472_SNP [dm3] 3L_12224372_SNP [dm6]	A	T	2.306e^-4	0.963	UPSTREAM app INTRON app	TF binding site mE1_TFBS_inv
3R	17754771	3R_17754771_SNP [dm3] 3R_21929049_SNP [dm6]	G	T	2.308e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	5348337	2R_5348337_SNP [dm3] 2R_9460832_SNP [dm6]	T	C	2.309e^-4	0.963	INTRON Camta
2R	19719447	2R_19719447_DEL [dm3] 2R_23831924_DEL [dm6]	TT	T	2.312e^-4	0.963	INTRON CG5549
2L	16416412	2L_16416412_SNP [dm3] 2L_16416412_SNP [dm6]	T	C	2.318e^-4	0.963	INTRON CG5888	TF binding site mE1_TFBS_cad
2R	12027753	2R_12027753_SNP [dm3] 2R_16140248_SNP [dm6]	T	A	2.331e^-4	0.963	INTRON Got1
2L	17355951	2L_17355951_SNP [dm3] 2L_17355951_SNP [dm6]	C	T	2.333e^-4	0.963	DOWNSTREAM CR44345 INTERGENIC
2L	5301925	2L_5301925_SNP [dm3] 2L_5301925_SNP [dm6]	A	G	2.343e^-4	0.963	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15894651	2R_15894651_DEL [dm3] 2R_20007146_DEL [dm6]	GTTTTCCG	G	2.350e^-4	0.963	EXON CR44628	TF binding site mE1_TFBS_Trl
2R	16476067	2R_16476067_INS [dm3] 2R_20588562_INS [dm6]	C	CC	2.352e^-4	0.963	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18887395	3L_18887395_DEL [dm3] 3L_18894295_DEL [dm6]	AAA	T	2.354e^-4	0.963	INTRON CG3902	TF binding site mE1_TFBS_cad
3L	10731758	3L_10731758_SNP [dm3] 3L_10738658_SNP [dm6]	T	C	2.359e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13264634	3L_13264634_SNP [dm3] 3L_13271534_SNP [dm6]	A	C	2.374e^-4	0.963	INTRON caps
3R	17385764	3R_17385764_SNP [dm3] 3R_21560042_SNP [dm6]	T	C	2.380e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1381214	2R_1381214_SNP [dm3] 2R_5493709_SNP [dm6]	G	A	2.387e^-4	0.963	INTRON CG30440
3R	9434000	3R_9434000_SNP [dm3] 3R_13608278_SNP [dm6]	G	A	2.392e^-4	0.963	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
3R	20777033	3R_20777033_SNP [dm3] 3R_24951311_SNP [dm6]	C	T	2.402e^-4	0.963	INTERGENIC
2L	19881731	2L_19881731_SNP [dm3] 2L_19881731_SNP [dm6]	G	A	2.403e^-4	0.963	INTRON sick
2L	7068576	2L_7068576_SNP [dm3] 2L_7068576_SNP [dm6]	C	T	2.408e^-4	0.963	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11118003	2L_11118003_SNP [dm3] 2L_11118003_SNP [dm6]	C	A	2.413e^-4	0.963	NON_SYNONYMOUS_CODING CG6230	TF binding site mE1_TFBS_cad
3L	1258014	3L_1258014_SNP [dm3] 3L_1258014_SNP [dm6]	A	G	2.416e^-4	0.963	INTRON CG9134
2L	8306503	2L_8306503_SNP [dm3] 2L_8306503_SNP [dm6]	C	T	2.416e^-4	0.963	SYNONYMOUS_CODING CG7840 DOWNSTREAM Ostgamma	TF binding site mE1_TFBS_sens
2L	8304889	2L_8304889_SNP [dm3] 2L_8304889_SNP [dm6]	T	C	2.416e^-4	0.963	SYNONYMOUS_CODING Scgalpha UPSTREAM CG7840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3058939	3R_3058939_SNP [dm3] 3R_7233217_SNP [dm6]	T	A	2.418e^-4	0.963	INTRON CG14608
2L	10132747	2L_10132747_SNP [dm3] 2L_10132747_SNP [dm6]	T	A	2.419e^-4	0.963	INTRON CG44153
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	2.426e^-4	0.963	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3R	1161347	3R_1161347_DEL [dm3] 3R_5335625_DEL [dm6]	AA	A	2.427e^-4	0.963	INTRON mtd
3R	10911283	3R_10911283_SNP [dm3] 3R_15085561_SNP [dm6]	G	C	2.436e^-4	0.963	INTRON CG6966
3R	26088319	3R_26088319_SNP [dm3] 3R_30262597_SNP [dm6]	T	C	2.437e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	15999380	2L_15999380_SNP [dm3] 2L_15999380_SNP [dm6]	A	T	2.443e^-4	0.963	UPSTREAM beat-Ic INTERGENIC
2L	8808217	2L_8808217_SNP [dm3] 2L_8808217_SNP [dm6]	G	T	2.447e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3817873	3L_3817873_SNP [dm3] 3L_3817873_SNP [dm6]	C	G	2.456e^-4	0.963	SYNONYMOUS_CODING Scsalpha UPSTREAM enc	TF binding site BDTNP1_TFBS_dl
2R	14920506	2R_14920506_INS [dm3] 2R_19033001_INS [dm6]	C	CTTGGTCCAGCTC...	2.463e^-4	0.963	UPSTREAM 5-HT1B INTERGENIC
2L	12173172	2L_12173172_SNP [dm3] 2L_12173172_SNP [dm6]	C	T	2.466e^-4	0.963	UPSTREAM CG6583 DOWNSTREAM CR43356 INTRON crok	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	18753261	2R_18753261_SNP [dm3] 2R_22865738_SNP [dm6]	A	T	2.470e^-4	0.963	INTERGENIC
2L	8279773	2L_8279773_SNP [dm3] 2L_8279773_SNP [dm6]	A	G	2.472e^-4	0.963	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
3L	13221136	3L_13221136_SNP [dm3] 3L_13228036_SNP [dm6]	G	A	2.472e^-4	0.963	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	10701935	3R_10701935_SNP [dm3] 3R_14876213_SNP [dm6]	G	A	2.475e^-4	0.963	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15399328	3R_15399328_SNP [dm3] 3R_19573606_SNP [dm6]	C	A	2.481e^-4	0.963	INTRON Dys
3L	4665329	3L_4665329_SNP [dm3] 3L_4665329_SNP [dm6]	C	A	2.490e^-4	0.963	DOWNSTREAM CG32236 INTRON axo
3R	11246287	3R_11246287_SNP [dm3] 3R_15420565_SNP [dm6]	G	C	2.496e^-4	0.963	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5704895	3L_5704895_SNP [dm3] 3L_5711795_SNP [dm6]	A	G	2.499e^-4	0.963	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	7049231	3L_7049231_INS [dm3] 3L_7056131_INS [dm6]	G	GAGG	2.501e^-4	0.963	INTERGENIC
3L	1823452	3L_1823452_SNP [dm3] 3L_1823452_SNP [dm6]	A	T	2.501e^-4	0.963	DOWNSTREAM GV1 & 1 other INTERGENIC
3L	13603858	3L_13603858_SNP [dm3] 3L_13610758_SNP [dm6]	G	T	2.503e^-4	0.963	INTRON bru-3
3L	9622723	3L_9622723_SNP [dm3] 3L_9629623_SNP [dm6]	C	T	2.519e^-4	0.963	UPSTREAM CG8336 & 1 other INTRON CG8336	TF binding site BDTNP1_TFBS_dl
3R	20909939	3R_20909939_SNP [dm3] 3R_25084217_SNP [dm6]	C	T	2.553e^-4	0.963	SYNONYMOUS_CODING fd96Ca	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11043873	2R_11043873_SNP [dm3] 2R_15156368_SNP [dm6]	T	A	2.569e^-4	0.963	INTRON igl
2L	10093145	2L_10093145_SNP [dm3] 2L_10093145_SNP [dm6]	A	T	2.573e^-4	0.963	UPSTREAM CG13133 & 1 other INTRON CG44153
2R	16043604	2R_16043604_SNP [dm3] 2R_20156099_SNP [dm6]	A	T	2.574e^-4	0.963	INTERGENIC
2L	9996831	2L_9996831_SNP [dm3] 2L_9996831_SNP [dm6]	T	A	2.579e^-4	0.963	UTR_3_PRIME SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	16621563	X_16621563_SNP [dm3] X_16727530_SNP [dm6]	G	A	2.587e^-4	0.963	UTR_3_PRIME CG9634 DOWNSTREAM CG32572
2L	7472163	2L_7472163_SNP [dm3] 2L_7472163_SNP [dm6]	G	A	2.588e^-4	0.963	SYNONYMOUS_CODING CG6055 DOWNSTREAM Ziz
3L	287027	3L_287027_SNP [dm3] 3L_287027_SNP [dm6]	A	G	2.589e^-4	0.963	SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15743593	2L_15743593_SNP [dm3] 2L_15743593_SNP [dm6]	A	C	2.589e^-4	0.963	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	16332514	2L_16332514_SNP [dm3] 2L_16332514_SNP [dm6]	T	C	2.596e^-4	0.963	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
2L	9996829	2L_9996829_SNP [dm3] 2L_9996829_SNP [dm6]	A	C	2.600e^-4	0.963	UTR_3_PRIME SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13975515	2L_13975515_SNP [dm3] 2L_13975515_SNP [dm6]	A	G	2.601e^-4	0.963	NON_SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5278090	3L_5278090_SNP [dm3] 3L_5284990_SNP [dm6]	C	T	2.608e^-4	0.963	INTERGENIC
2L	1242037	2L_1242037_SNP [dm3] 2L_1242037_SNP [dm6]	C	T	2.609e^-4	0.963	SYNONYMOUS_CODING CG5397
3L	18404404	3L_18404404_SNP [dm3] 3L_18411304_SNP [dm6]	A	G	2.612e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12841335	2L_12841335_SNP [dm3] 2L_12841335_SNP [dm6]	T	A	2.620e^-4	0.963	UPSTREAM CR44971 DOWNSTREAM CR44970 INTERGENIC
3L	2060356	3L_2060356_SNP [dm3] 3L_2060356_SNP [dm6]	A	T	2.620e^-4	0.963	NON_SYNONYMOUS_CODING sls INTRON sls
3L	5437577	3L_5437577_SNP [dm3] 3L_5444477_SNP [dm6]	C	T	2.631e^-4	0.963	INTERGENIC
2L	15745265	2L_15745265_SNP [dm3] 2L_15745265_SNP [dm6]	A	T	2.634e^-4	0.963	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	16381794	2L_16381794_SNP [dm3] 2L_16381794_SNP [dm6]	A	T	2.635e^-4	0.963	INTERGENIC
2R	2048541	2R_2048541_SNP [dm3] 2R_6161036_SNP [dm6]	T	A	2.636e^-4	0.963	UPSTREAM tRNA:R2:42Ac DOWNSTREAM tRNA:N5:42Ac INTRON EcR	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
X	20614399	X_20614399_SNP [dm3] X_20743372_SNP [dm6]	T	C	2.643e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_sens
2L	18919678	2L_18919678_SNP [dm3] 2L_18919678_SNP [dm6]	T	G	2.644e^-4	0.963	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
3L	17628316	3L_17628316_SNP [dm3] 3L_17635216_SNP [dm6]	G	A	2.647e^-4	0.963	INTRON CG7497
3R	14298322	3R_14298322_SNP [dm3] 3R_18472600_SNP [dm6]	C	T	2.650e^-4	0.963	INTRON fru
2R	17728939	2R_17728939_SNP [dm3] 2R_21841434_SNP [dm6]	C	T	2.650e^-4	0.963	INTERGENIC
2L	4713697	2L_4713697_SNP [dm3] 2L_4713697_SNP [dm6]	G	C	2.656e^-4	0.963	INTRON CG34351	TF binding site mE1_TFBS_inv
3L	2182607	3L_2182607_SNP [dm3] 3L_2182607_SNP [dm6]	A	C	2.673e^-4	0.963	INTERGENIC
2L	1356435	2L_1356435_SNP [dm3] 2L_1356435_SNP [dm6]	T	A	2.690e^-4	0.963	UPSTREAM CG5565 INTERGENIC
2L	5457348	2L_5457348_SNP [dm3] 2L_5457348_SNP [dm6]	A	G	2.690e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	24050307	3R_24050307_SNP [dm3] 3R_28224585_SNP [dm6]	T	C	2.698e^-4	0.963	INTRON CG34354
2L	18320264	2L_18320264_SNP [dm3] 2L_18320264_SNP [dm6]	C	G	2.704e^-4	0.963	UTR_5_PRIME Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13836636	2R_13836636_SNP [dm3] 2R_17949131_SNP [dm6]	T	G	2.706e^-4	0.963	INTERGENIC
2L	12841392	2L_12841392_SNP [dm3] 2L_12841392_SNP [dm6]	A	T	2.709e^-4	0.963	UPSTREAM CR44971 DOWNSTREAM CR44970 INTERGENIC
2L	10484771	2L_10484771_SNP [dm3] 2L_10484771_SNP [dm6]	C	A	2.710e^-4	0.963	DOWNSTREAM CG7456 INTRON Grip75	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5107773	X_5107773_SNP [dm3] X_5213740_SNP [dm6]	T	A	2.711e^-4	0.963	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26345851	3R_26345851_SNP [dm3] 3R_30520129_SNP [dm6]	T	C	2.721e^-4	0.963	INTRON jdp
3L	3562312	3L_3562312_SNP [dm3] 3L_3562312_SNP [dm6]	T	G	2.769e^-4	0.963	INTRON Eip63E
3R	25463895	3R_25463895_SNP [dm3] 3R_29638173_SNP [dm6]	G	A	2.774e^-4	0.963	INTRON Dop1R2
2R	18110040	2R_18110040_SNP [dm3] 2R_22222535_SNP [dm6]	G	A	2.779e^-4	0.963	SYNONYMOUS_CODING Oatp58Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5457328	2L_5457328_SNP [dm3] 2L_5457328_SNP [dm6]	G	A	2.789e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	25515640	3R_25515640_SNP [dm3] 3R_29689918_SNP [dm6]	A	T	2.792e^-4	0.963	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
X	10431400	X_10431400_SNP [dm3] X_10537367_SNP [dm6]	A	G	2.795e^-4	0.963	INTRON spri	TF binding site mE1_TFBS_inv
3R	21826629	3R_21826629_SNP [dm3] 3R_26000907_SNP [dm6]	A	G	2.796e^-4	0.963	UPSTREAM CR45037 DOWNSTREAM E_spl_mgamma-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	8878755	2R_8878755_SNP [dm3] 2R_12991250_SNP [dm6]	C	T	2.801e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3212917	2L_3212917_SNP [dm3] 2L_3212917_SNP [dm6]	C	A	2.803e^-4	0.963	INTERGENIC
3R	9740675	3R_9740675_SNP [dm3] 3R_13914953_SNP [dm6]	C	T	2.805e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17358561	3R_17358561_SNP [dm3] 3R_21532839_SNP [dm6]	C	A	2.812e^-4	0.963	INTRON CR43372
3L	2993434	3L_2993434_SNP [dm3] 3L_2993434_SNP [dm6]	G	T	2.816e^-4	0.963	INTERGENIC
3R	26694732	3R_26694732_SNP [dm3] 3R_30869010_SNP [dm6]	T	C	2.818e^-4	0.963	UTR_3_PRIME Cpr100A
2R	7268875	2R_7268875_SNP [dm3] 2R_11381370_SNP [dm6]	A	G	2.819e^-4	0.963	UTR_3_PRIME Sod3 INTRON Sod3
3L	6479194	3L_6479194_SNP [dm3] 3L_6486094_SNP [dm6]	A	G	2.823e^-4	0.963	DOWNSTREAM CG10147 & 1 other INTERGENIC
3L	10144937	3L_10144937_INS [dm3] 3L_10151837_INS [dm6]	A	AAGTCATATTTTGCATTTTG...	2.825e^-4	0.963	UTR_5_PRIME CG8072 UPSTREAM snoRNA:MeU2-A31 INTRON dpr10
2L	7465374	2L_7465374_SNP [dm3] 2L_7465374_SNP [dm6]	G	T	2.831e^-4	0.963	INTERGENIC
3L	5877852	3L_5877852_SNP [dm3] 3L_5884752_SNP [dm6]	T	A	2.831e^-4	0.963	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17466199	2R_17466199_SNP [dm3] 2R_21578694_SNP [dm6]	G	C	2.849e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8759637	X_8759637_SNP [dm3] X_8865604_SNP [dm6]	C	A	2.850e^-4	0.963	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	16343495	2L_16343495_SNP [dm3] 2L_16343495_SNP [dm6]	G	A	2.861e^-4	0.963	DOWNSTREAM chif INTRON chif & 1 other
X	8752727	X_8752727_SNP [dm3] X_8858694_SNP [dm6]	T	G	2.869e^-4	0.963	INTRON CG12075
2R	14289920	2R_14289920_SNP [dm3] 2R_18402415_SNP [dm6]	A	T	2.882e^-4	0.963	UPSTREAM CR43688 & 1 other DOWNSTREAM GstE3 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	9589259	2L_9589259_SNP [dm3] 2L_9589259_SNP [dm6]	T	C	2.883e^-4	0.963	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
3R	23012110	3R_23012110_SNP [dm3] 3R_27186388_SNP [dm6]	T	G	2.886e^-4	0.963	INTRON Ser	regulatory region REDfly_CRMs
2R	9101326	2R_9101326_SNP [dm3] 2R_13213821_SNP [dm6]	C	T	2.891e^-4	0.963	SYNONYMOUS_CODING AQP UPSTREAM CG4627
2L	10526746	2L_10526746_SNP [dm3] 2L_10526746_SNP [dm6]	G	A	2.895e^-4	0.963	UPSTREAM Lip4 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	9589135	2L_9589135_SNP [dm3] 2L_9589135_SNP [dm6]	G	A	2.899e^-4	0.963	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
3R	9877011	3R_9877011_SNP [dm3] 3R_14051289_SNP [dm6]	T	A	2.910e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10947345	X_10947345_SNP [dm3] X_11053312_SNP [dm6]	T	C	2.910e^-4	0.963	INTRON CG1552	TF binding site mE1_TFBS_chinmo
X	8751172	X_8751172_SNP [dm3] X_8857139_SNP [dm6]	T	A	2.920e^-4	0.963	INTRON CG12075
2R	19844598	2R_19844598_SNP [dm3] 2R_23957075_SNP [dm6]	C	T	2.937e^-4	0.963	SYNONYMOUS_CODING CG16787 UPSTREAM alpha-catenin-related DOWNSTREAM thoc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20777022	3R_20777022_SNP [dm3] 3R_24951300_SNP [dm6]	A	T	2.944e^-4	0.963	INTERGENIC
3L	16537469	3L_16537469_SNP [dm3] 3L_16544369_SNP [dm6]	G	T	2.947e^-4	0.963	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
X	6087464	X_6087464_SNP [dm3] X_6193431_SNP [dm6]	T	A	2.949e^-4	0.963	UPSTREAM Ca-alpha1T INTERGENIC
3L	2183053	3L_2183053_SNP [dm3] 3L_2183053_SNP [dm6]	A	T	2.952e^-4	0.963	INTERGENIC
3L	5875488	3L_5875488_SNP [dm3] 3L_5882388_SNP [dm6]	A	G	2.955e^-4	0.963	UTR_5_PRIME CG13287	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11119301	X_11119301_SNP [dm3] X_11225268_SNP [dm6]	T	C	2.962e^-4	0.963	INTRON CG44422
3R	26088334	3R_26088334_SNP [dm3] 3R_30262612_SNP [dm6]	G	T	2.964e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	8915390	2R_8915390_SNP [dm3] 2R_13027885_SNP [dm6]	T	C	2.976e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14810034	2R_14810034_SNP [dm3] 2R_18922529_SNP [dm6]	G	A	2.982e^-4	0.963	INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23012099	3R_23012099_DEL [dm3] 3R_27186377_DEL [dm6]	GCAAGTT	CGG	2.982e^-4	0.963	INTRON Ser	regulatory region REDfly_CRMs
3L	2182080	3L_2182080_SNP [dm3] 3L_2182080_SNP [dm6]	C	T	2.987e^-4	0.963	INTERGENIC
3L	11319762	3L_11319762_SNP [dm3] 3L_11326662_SNP [dm6]	T	A	2.993e^-4	0.963	INTERGENIC
2L	16332498	2L_16332498_SNP [dm3] 2L_16332498_SNP [dm6]	A	G	2.995e^-4	0.963	SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3L	3817891	3L_3817891_SNP [dm3] 3L_3817891_SNP [dm6]	C	G	2.995e^-4	0.963	SYNONYMOUS_CODING Scsalpha UPSTREAM enc	TF binding site BDTNP1_TFBS_dl
2L	16341772	2L_16341772_SNP [dm3] 2L_16341772_SNP [dm6]	C	T	2.998e^-4	0.963	NON_SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
3R	9592286	3R_9592286_SNP [dm3] 3R_13766564_SNP [dm6]	C	G	3.003e^-4	0.963	UPSTREAM Cht5 INTRON CG9312
2R	9657907	2R_9657907_SNP [dm3] 2R_13770402_SNP [dm6]	C	T	3.014e^-4	0.963	INTRON Cpr50Ca
2R	415219	2R_415219_DEL [dm3] 2R_4527714_DEL [dm6]	CAG	C	3.021e^-4	0.963	INTERGENIC	transposable element FlyBase
3R	25292766	3R_25292766_SNP [dm3] 3R_29467044_SNP [dm6]	C	T	3.021e^-4	0.963	INTRON Ptp99A
3L	6773120	3L_6773120_DEL [dm3] 3L_6780020_DEL [dm6]	CTTATA	C	3.039e^-4	0.963	INTERGENIC
2R	8851760	2R_8851760_SNP [dm3] 2R_12964255_SNP [dm6]	T	A	3.041e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17910648	3L_17910648_SNP [dm3] 3L_17917548_SNP [dm6]	A	G	3.045e^-4	0.963	INTERGENIC
3R	10674861	3R_10674861_SNP [dm3] 3R_14849139_SNP [dm6]	G	A	3.048e^-4	0.963	INTRON btsz
2R	17568968	2R_17568968_SNP [dm3] 2R_21681463_SNP [dm6]	T	C	3.062e^-4	0.963	INTRON CG30263
X	10879946	X_10879946_SNP [dm3] X_10985913_SNP [dm6]	G	A	3.065e^-4	0.963	INTRON CG42339
2R	5908403	2R_5908403_SNP [dm3] 2R_10020898_SNP [dm6]	T	A	3.070e^-4	0.963	INTRON Pka-R2
3R	11403952	3R_11403952_SNP [dm3] 3R_15578230_SNP [dm6]	A	C	3.091e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4079792	2L_4079792_SNP [dm3] 2L_4079792_SNP [dm6]	T	A	3.092e^-4	0.963	INTRON ed
2R	15431449	2R_15431449_SNP [dm3] 2R_19543944_SNP [dm6]	C	G	3.095e^-4	0.963	INTRON sm
2L	15773524	2L_15773524_SNP [dm3] 2L_15773524_SNP [dm6]	A	G	3.116e^-4	0.963	UPSTREAM CG31826 INTERGENIC
3L	3857136	3L_3857136_SNP [dm3] 3L_3857136_SNP [dm6]	G	A	3.124e^-4	0.963	INTRON Awh
2L	19880897	2L_19880897_SNP [dm3] 2L_19880897_SNP [dm6]	T	C	3.127e^-4	0.963	INTRON sick
3R	22560533	3R_22560533_SNP [dm3] 3R_26734811_SNP [dm6]	T	G	3.127e^-4	0.963	DOWNSTREAM CG6403 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2122131	3L_2122131_INS [dm3] 3L_2122131_INS [dm6]	C	TGAAGAGCAAA...	3.132e^-4	0.963	DOWNSTREAM zormin INTRON zormin
3L	11227236	3L_11227236_SNP [dm3] 3L_11234136_SNP [dm6]	A	T	3.132e^-4	0.963	INTRON Ir68a
3L	11227240	3L_11227240_SNP [dm3] 3L_11234140_SNP [dm6]	A	C	3.132e^-4	0.963	INTRON Ir68a
3L	11227244	3L_11227244_INS [dm3] 3L_11234144_INS [dm6]	T	TCTATCAATTTACCCTCTGA...	3.132e^-4	0.963	INTRON Ir68a
3R	22274624	3R_22274624_SNP [dm3] 3R_26448902_SNP [dm6]	T	A	3.139e^-4	0.963	UTR_3_PRIME tx UPSTREAM Hex-t1
2R	15900270	2R_15900270_SNP [dm3] 2R_20012765_SNP [dm6]	A	G	3.148e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	1311841	2L_1311841_SNP [dm3] 2L_1311841_SNP [dm6]	C	A	3.148e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	8484926	2R_8484926_SNP [dm3] 2R_12597421_SNP [dm6]	T	A	3.156e^-4	0.963	INTRON Amph
2L	852469	2L_852469_SNP [dm3] 2L_852469_SNP [dm6]	C	G	3.157e^-4	0.963	UPSTREAM kraken INTRON CG4291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3345391	2L_3345391_SNP [dm3] 2L_3345391_SNP [dm6]	A	C	3.157e^-4	0.963	INTRON E23
3L	15899463	3L_15899463_SNP [dm3] 3L_15906363_SNP [dm6]	T	A	3.162e^-4	0.963	INTRON sff
X	11119294	X_11119294_SNP [dm3] X_11225261_SNP [dm6]	A	T	3.167e^-4	0.963	INTRON CG44422
3L	6773160	3L_6773160_SNP [dm3] 3L_6780060_SNP [dm6]	C	T	3.171e^-4	0.963	INTERGENIC
2L	18982944	2L_18982944_SNP [dm3] 2L_18982944_SNP [dm6]	G	A	3.172e^-4	0.963	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25759000	3R_25759000_SNP [dm3] 3R_29933278_SNP [dm6]	G	T	3.178e^-4	0.963	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	3904417	3R_3904417_INS [dm3] 3R_8078695_INS [dm6]	G	GT	3.180e^-4	0.963	INTRON mAChR-B
2L	16381796	2L_16381796_SNP [dm3] 2L_16381796_SNP [dm6]	C	G	3.213e^-4	0.963	INTERGENIC
3R	13197468	3R_13197468_SNP [dm3] 3R_17371746_SNP [dm6]	T	C	3.214e^-4	0.963	EXON CR44256
2R	6190864	2R_6190864_SNP [dm3] 2R_10303359_SNP [dm6]	C	T	3.222e^-4	0.963	UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8562970	2R_8562970_SNP [dm3] 2R_12675465_SNP [dm6]	A	G	3.230e^-4	0.963	UPSTREAM CG42708 INTRON CG42708
2L	16359594	2L_16359594_SNP [dm3] 2L_16359594_SNP [dm6]	G	C	3.232e^-4	0.963	INTERGENIC
3R	4186150	3R_4186150_SNP [dm3] 3R_8360428_SNP [dm6]	C	T	3.234e^-4	0.963	SYNONYMOUS_CODING CG9684 DOWNSTREAM stck
2R	18109337	2R_18109337_SNP [dm3] 2R_22221832_SNP [dm6]	G	A	3.236e^-4	0.963	SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
3L	18887411	3L_18887411_SNP [dm3] 3L_18894311_SNP [dm6]	G	T	3.239e^-4	0.963	INTRON CG3902	TF binding site mE1_TFBS_cad
2R	9366083	2R_9366083_SNP [dm3] 2R_13478578_SNP [dm6]	T	C	3.245e^-4	0.963	DOWNSTREAM CG43192 INTRON arr
2L	520949	2L_520949_SNP [dm3] 2L_520949_SNP [dm6]	G	T	3.256e^-4	0.963	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14183008	3L_14183008_SNP [dm3] 3L_14189908_SNP [dm6]	A	C	3.258e^-4	0.963	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17710155	3R_17710155_SNP [dm3] 3R_21884433_SNP [dm6]	T	G	3.261e^-4	0.963	UTR_5_PRIME fit UPSTREAM CR45046 DOWNSTREAM CG17819 & 1 other	TF binding site mE1_TFBS_inv
3L	3589121	3L_3589121_SNP [dm3] 3L_3589121_SNP [dm6]	A	G	3.263e^-4	0.963	INTRON Eip63E
2L	7075702	2L_7075702_SNP [dm3] 2L_7075702_SNP [dm6]	G	A	3.268e^-4	0.963	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22279814	3R_22279814_SNP [dm3] 3R_26454092_SNP [dm6]	G	A	3.270e^-4	0.963	UTR_3_PRIME CG5447 UPSTREAM CG43117
2R	10100318	2R_10100318_SNP [dm3] 2R_14212813_SNP [dm6]	G	T	3.272e^-4	0.963	UPSTREAM Sox15 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9920278	2R_9920278_SNP [dm3] 2R_14032773_SNP [dm6]	G	T	3.274e^-4	0.963	INTRON mam
X	14441396	X_14441396_SNP [dm3] X_14547363_SNP [dm6]	G	A	3.286e^-4	0.963	INTERGENIC
2L	1276165	2L_1276165_SNP [dm3] 2L_1276165_SNP [dm6]	G	A	3.287e^-4	0.963	INTRON robo3
2R	16087491	2R_16087491_INS [dm3] 2R_20199986_INS [dm6]	T	TAGCT	3.292e^-4	0.963	INTERGENIC
3R	12790124	3R_12790124_DEL [dm3] 3R_16964402_DEL [dm6]	TATAT	T	3.296e^-4	0.963	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl
2L	16340047	2L_16340047_SNP [dm3] 2L_16340047_SNP [dm6]	G	A	3.306e^-4	0.963	SYNONYMOUS_CODING CG42266 DOWNSTREAM CG44405
3L	10555495	3L_10555495_SNP [dm3] 3L_10562395_SNP [dm6]	G	T	3.307e^-4	0.963	INTRON A2bp1
2L	13870030	2L_13870030_SNP [dm3] 2L_13870030_SNP [dm6]	G	T	3.308e^-4	0.963	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9273674	2R_9273674_SNP [dm3] 2R_13386169_SNP [dm6]	G	A	3.313e^-4	0.963	INTERGENIC
2L	15748975	2L_15748975_SNP [dm3] 2L_15748975_SNP [dm6]	G	T	3.319e^-4	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2R	6196266	2R_6196266_SNP [dm3] 2R_10308761_SNP [dm6]	T	C	3.330e^-4	0.963	NON_SYNONYMOUS_CODING JhI-1	TF binding site mE1_TFBS_inv
X	20213495	X_20213495_INS [dm3] X_20342468_INS [dm6]	A	AACTATTA	3.345e^-4	0.963	INTERGENIC
2R	18464700	2R_18464700_SNP [dm3] 2R_22577195_SNP [dm6]	C	T	3.347e^-4	0.963	INTRON dnr1
3L	2122420	3L_2122420_SNP [dm3] 3L_2122420_SNP [dm6]	C	G	3.348e^-4	0.963	DOWNSTREAM zormin INTRON zormin
3L	15304581	3L_15304581_SNP [dm3] 3L_15311481_SNP [dm6]	C	G	3.356e^-4	0.963	DOWNSTREAM CG7255 INTERGENIC
3L	14172888	3L_14172888_SNP [dm3] 3L_14179788_SNP [dm6]	A	G	3.358e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs
2L	13824515	2L_13824515_SNP [dm3] 2L_13824515_SNP [dm6]	C	G	3.363e^-4	0.963	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11465166	3L_11465166_SNP [dm3] 3L_11472066_SNP [dm6]	T	A	3.369e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	265246	2R_265246_SNP [dm3] 2R_4377741_SNP [dm6]	G	A	3.381e^-4	0.963	INTRON Gprk1
3L	19838438	3L_19838438_DEL [dm3] 3L_19845338_DEL [dm6]	AATTTAAAC	A	3.384e^-4	0.963	UTR_5_PRIME Papss DOWNSTREAM kto	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25048586	3R_25048586_INS [dm3] 3R_29222864_INS [dm6]	T	TGGTCGTT	3.386e^-4	0.963	UPSTREAM Brd8 DOWNSTREAM Ef1gamma INTRON CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	9589311	2L_9589311_SNP [dm3] 2L_9589311_SNP [dm6]	T	C	3.387e^-4	0.963	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
3L	15177608	3L_15177608_SNP [dm3] 3L_15184508_SNP [dm6]	C	T	3.396e^-4	0.963	INTERGENIC
X	16348244	X_16348244_SNP [dm3] X_16454211_SNP [dm6]	A	T	3.396e^-4	0.963	UTR_3_PRIME Rbp2 DOWNSTREAM Rbp2 & 1 other
2L	19400477	2L_19400477_SNP [dm3] 2L_19400477_SNP [dm6]	C	T	3.398e^-4	0.963	DOWNSTREAM Pax INTERGENIC	transposable element FlyBase
3L	9308542	3L_9308542_SNP [dm3] 3L_9315442_SNP [dm6]	A	T	3.400e^-4	0.963	INTERGENIC
3L	19386244	3L_19386244_SNP [dm3] 3L_19393144_SNP [dm6]	G	T	3.405e^-4	0.963	INTRON CG32206
3L	8646763	3L_8646763_SNP [dm3] 3L_8653663_SNP [dm6]	C	T	3.415e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6589418	2L_6589418_SNP [dm3] 2L_6589418_SNP [dm6]	C	T	3.421e^-4	0.963	INTRON CG11319
2L	16322011	2L_16322011_SNP [dm3] 2L_16322011_SNP [dm6]	T	A	3.428e^-4	0.963	INTRON cact
2R	410874	2R_410874_MNP [dm3] 2R_4523369_MNP [dm6]	CCG	TAC	3.429e^-4	0.963	INTERGENIC	transposable element FlyBase
2L	12136405	2L_12136405_SNP [dm3] 2L_12136405_SNP [dm6]	G	T	3.443e^-4	0.963	INTERGENIC
2R	6254137	2R_6254137_SNP [dm3] 2R_10366632_SNP [dm6]	A	T	3.450e^-4	0.963	INTRON CG42732
2L	15748931	2L_15748931_SNP [dm3] 2L_15748931_SNP [dm6]	G	C	3.451e^-4	0.963	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3L	16538877	3L_16538877_SNP [dm3] 3L_16545777_SNP [dm6]	A	G	3.464e^-4	0.963	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	2153586	3L_2153586_SNP [dm3] 3L_2153586_SNP [dm6]	A	C	3.466e^-4	0.963	UTR_3_PRIME CG15822
3R	9134586	3R_9134586_SNP [dm3] 3R_13308864_SNP [dm6]	C	T	3.468e^-4	0.963	SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 INTRON CG32473
2R	2094018	2R_2094018_SNP [dm3] 2R_6206513_SNP [dm6]	T	C	3.468e^-4	0.963	DOWNSTREAM CG17994 INTERGENIC
2R	19719450	2R_19719450_SNP [dm3] 2R_23831927_SNP [dm6]	A	T	3.478e^-4	0.963	INTRON CG5549
2R	1381094	2R_1381094_SNP [dm3] 2R_5493589_SNP [dm6]	T	G	3.505e^-4	0.963	INTRON CG30440
X	1440730	X_1440730_SNP [dm3] X_1546697_SNP [dm6]	T	G	3.512e^-4	0.963	INTRON Mur2B
3L	3769698	3L_3769698_SNP [dm3] 3L_3769698_SNP [dm6]	A	G	3.522e^-4	0.963	INTRON CG32264
2L	10352824	2L_10352824_SNP [dm3] 2L_10352824_SNP [dm6]	A	C	3.533e^-4	0.963	UPSTREAM CG34367 INTRON CG34367
3L	3857133	3L_3857133_SNP [dm3] 3L_3857133_SNP [dm6]	C	T	3.536e^-4	0.963	INTRON Awh
2R	16580600	2R_16580600_DEL [dm3] 2R_20693095_DEL [dm6]	ATTCTGC	A	3.536e^-4	0.963	DOWNSTREAM CR44659
2L	13868603	2L_13868603_SNP [dm3] 2L_13868603_SNP [dm6]	C	T	3.547e^-4	0.963	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9589342	2L_9589342_SNP [dm3] 2L_9589342_SNP [dm6]	T	C	3.550e^-4	0.963	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
2R	14060912	2R_14060912_SNP [dm3] 2R_18173407_SNP [dm6]	C	A	3.555e^-4	0.963	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	3.560e^-4	0.963	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3R	26088315	3R_26088315_INS [dm3] 3R_30262593_INS [dm6]	A	ATT	3.564e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	11526979	2L_11526979_SNP [dm3] 2L_11526979_SNP [dm6]	G	A	3.568e^-4	0.963	INTRON CG31705
X	5158166	X_5158166_SNP [dm3] X_5264133_SNP [dm6]	T	C	3.577e^-4	0.963	INTERGENIC
2R	4198316	2R_4198316_DEL [dm3] 2R_8310811_DEL [dm6]	AA	A	3.578e^-4	0.963	UPSTREAM CR44450 DOWNSTREAM CR44448 EXON CR44449
X	1458441	X_1458441_SNP [dm3] X_1564408_SNP [dm6]	A	G	3.581e^-4	0.963	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3R	13941600	3R_13941600_DEL [dm3] 3R_18115878_DEL [dm6]	TT	T	3.583e^-4	0.963	INTRON sr
3R	10689419	3R_10689419_INS [dm3] 3R_14863697_INS [dm6]	A	ACAGAGACCCTCT...	3.592e^-4	0.963	INTRON btsz
3L	287046	3L_287046_SNP [dm3] 3L_287046_SNP [dm6]	G	C	3.603e^-4	0.963	NON_SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2122320	3L_2122320_SNP [dm3] 3L_2122320_SNP [dm6]	T	A	3.610e^-4	0.963	DOWNSTREAM zormin INTRON zormin
2R	18591799	2R_18591799_SNP [dm3] 2R_22704294_SNP [dm6]	C	T	3.622e^-4	0.963	SYNONYMOUS_CODING CG30259 UPSTREAM Obp58b DOWNSTREAM Obp59a
2L	8568828	2L_8568828_SNP [dm3] 2L_8568828_SNP [dm6]	T	A	3.627e^-4	0.963	INTRON Sema-1a
3R	10011800	3R_10011800_SNP [dm3] 3R_14186078_SNP [dm6]	A	G	3.629e^-4	0.963	INTRON Dop1R1
3L	11227247	3L_11227247_SNP [dm3] 3L_11234147_SNP [dm6]	T	A	3.630e^-4	0.963	INTRON Ir68a
3L	14183016	3L_14183016_SNP [dm3] 3L_14189916_SNP [dm6]	A	T	3.631e^-4	0.963	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12136392	2L_12136392_SNP [dm3] 2L_12136392_SNP [dm6]	G	T	3.635e^-4	0.963	INTERGENIC
X	1458439	X_1458439_SNP [dm3] X_1564406_SNP [dm6]	G	A	3.638e^-4	0.963	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	1238541	2L_1238541_SNP [dm3] 2L_1238541_SNP [dm6]	C	A	3.638e^-4	0.963	INTERGENIC
3L	6773522	3L_6773522_SNP [dm3] 3L_6780422_SNP [dm6]	C	A	3.652e^-4	0.963	INTERGENIC
3R	9740665	3R_9740665_SNP [dm3] 3R_13914943_SNP [dm6]	G	C	3.652e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3562344	3L_3562344_SNP [dm3] 3L_3562344_SNP [dm6]	A	T	3.655e^-4	0.963	INTRON Eip63E
X	8671044	X_8671044_INS [dm3] X_8777011_INS [dm6]	A	ATA	3.663e^-4	0.963	INTRON Lim1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18716514	2L_18716514_SNP [dm3] 2L_18716514_SNP [dm6]	T	C	3.664e^-4	0.963	UTR_5_PRIME CG10348	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9029727	3L_9029727_SNP [dm3] 3L_9036627_SNP [dm6]	A	G	3.667e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13776798	3R_13776798_DEL [dm3] 3R_17951076_DEL [dm6]	TATATAA	C	3.670e^-4	0.963	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8851762	2R_8851762_SNP [dm3] 2R_12964257_SNP [dm6]	T	C	3.672e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10555470	3L_10555470_SNP [dm3] 3L_10562370_SNP [dm6]	A	T	3.681e^-4	0.963	INTRON A2bp1
3R	26088320	3R_26088320_SNP [dm3] 3R_30262598_SNP [dm6]	G	A	3.681e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
X	13047703	X_13047703_SNP [dm3] X_13153670_SNP [dm6]	A	T	3.681e^-4	0.963	UTR_3_PRIME CG4318 DOWNSTREAM CG32645
3R	12790110	3R_12790110_SNP [dm3] 3R_16964388_SNP [dm6]	A	C	3.687e^-4	0.963	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl
X	17659688	X_17659688_SNP [dm3] X_17765655_SNP [dm6]	G	A	3.689e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1058162	2L_1058162_DEL [dm3] 2L_1058162_DEL [dm6]	TGATTGCAAGCCGAT...	T	3.697e^-4	0.963	INTRON S	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	9754742	3R_9754742_SNP [dm3] 3R_13929020_SNP [dm6]	C	T	3.699e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15672983	2R_15672983_SNP [dm3] 2R_19785478_SNP [dm6]	A	G	3.705e^-4	0.963	EXON CR45231	regulatory region REDfly_CRMs
3L	3694218	3L_3694218_SNP [dm3] 3L_3694218_SNP [dm6]	C	T	3.705e^-4	0.963	EXON CR43485
X	7291583	X_7291583_SNP [dm3] X_7397550_SNP [dm6]	A	G	3.709e^-4	0.963	INTRON CG1677 & 1 other
2L	11321906	2L_11321906_SNP [dm3] 2L_11321906_SNP [dm6]	A	C	3.710e^-4	0.963	INTERGENIC
2R	9920279	2R_9920279_SNP [dm3] 2R_14032774_SNP [dm6]	T	C	3.714e^-4	0.963	INTRON mam
3R	19300711	3R_19300711_SNP [dm3] 3R_23474989_SNP [dm6]	A	C	3.718e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	26088330	3R_26088330_SNP [dm3] 3R_30262608_SNP [dm6]	G	T	3.719e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7465075	2L_7465075_SNP [dm3] 2L_7465075_SNP [dm6]	G	T	3.720e^-4	0.963	INTERGENIC
3R	17754848	3R_17754848_INS [dm3] 3R_21929126_INS [dm6]	T	TT	3.720e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	18287360	X_18287360_SNP [dm3] X_18393327_SNP [dm6]	T	C	3.731e^-4	0.963	INTRON CG32549
3R	22877554	3R_22877554_SNP [dm3] 3R_27051832_SNP [dm6]	A	G	3.732e^-4	0.963	DOWNSTREAM TwdlT INTRON RYa-R
2L	7494272	2L_7494272_SNP [dm3] 2L_7494272_SNP [dm6]	G	A	3.734e^-4	0.963	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1559329	3L_1559329_SNP [dm3] 3L_1559329_SNP [dm6]	C	T	3.739e^-4	0.963	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3817888	3L_3817888_SNP [dm3] 3L_3817888_SNP [dm6]	T	C	3.748e^-4	0.963	SYNONYMOUS_CODING Scsalpha UPSTREAM enc	TF binding site BDTNP1_TFBS_dl
2R	18108820	2R_18108820_SNP [dm3] 2R_22221315_SNP [dm6]	C	A	3.751e^-4	0.963	SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da
3L	3489848	3L_3489848_SNP [dm3] 3L_3489848_SNP [dm6]	T	A	3.757e^-4	0.963	INTRON CG42324
3R	13929769	3R_13929769_SNP [dm3] 3R_18104047_SNP [dm6]	C	T	3.758e^-4	0.963	INTRON sr
3R	19906104	3R_19906104_SNP [dm3] 3R_24080382_SNP [dm6]	G	C	3.763e^-4	0.963	INTRON 4EHP
3L	1438189	3L_1438189_SNP [dm3] 3L_1438189_SNP [dm6]	G	A	3.764e^-4	0.963	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	520748	2L_520748_SNP [dm3] 2L_520748_SNP [dm6]	G	A	3.764e^-4	0.963	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	13398559	2R_13398559_SNP [dm3] 2R_17511054_SNP [dm6]	C	A	3.771e^-4	0.963	UTR_3_PRIME CG34193 UPSTREAM CG4847 DOWNSTREAM CG34193
3L	3817313	3L_3817313_SNP [dm3] 3L_3817313_SNP [dm6]	G	T	3.774e^-4	0.963	UPSTREAM Acp63F INTRON Scsalpha
2R	8850432	2R_8850432_SNP [dm3] 2R_12962927_SNP [dm6]	C	T	3.774e^-4	0.963	INTERGENIC
2R	514474	2R_514474_SNP [dm3] 2R_4626969_SNP [dm6]	G	A	3.775e^-4	0.963	INTERGENIC
3R	14354140	3R_14354140_DEL [dm3] 3R_18528418_DEL [dm6]	ATGTTATTCAGACGAAAGTT...	A	3.780e^-4	0.963	INTRON fru
2L	11299189	2L_11299189_SNP [dm3] 2L_11299189_SNP [dm6]	A	G	3.781e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22316516	3R_22316516_SNP [dm3] 3R_26490794_SNP [dm6]	G	A	3.784e^-4	0.963	INTRON plum
2L	12841329	2L_12841329_SNP [dm3] 2L_12841329_SNP [dm6]	G	A	3.799e^-4	0.963	UPSTREAM CR44971 DOWNSTREAM CR44970 INTERGENIC
3L	2629643	3L_2629643_SNP [dm3] 3L_2629643_SNP [dm6]	A	C	3.803e^-4	0.963	UPSTREAM Pxn DOWNSTREAM CR45660 INTRON Pxn
2R	19663303	2R_19663303_SNP [dm3] 2R_23775780_SNP [dm6]	G	A	3.811e^-4	0.963	INTRON CG9850
2R	16231506	2R_16231506_SNP [dm3] 2R_20344001_SNP [dm6]	A	G	3.820e^-4	0.963	INTRON CG13870	TF binding site mE1_TFBS_inv
3L	4027366	3L_4027366_SNP [dm3] 3L_4027366_SNP [dm6]	G	C	3.826e^-4	0.963	SYNONYMOUS_CODING Gr64a
3L	12564309	3L_12564309_SNP [dm3] 3L_12571209_SNP [dm6]	C	A	3.826e^-4	0.963	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8993790	2L_8993790_SNP [dm3] 2L_8993790_SNP [dm6]	G	A	3.837e^-4	0.963	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
3L	9160494	3L_9160494_SNP [dm3] 3L_9167394_SNP [dm6]	C	T	3.847e^-4	0.963	INTRON Rdl
2L	4082497	2L_4082497_SNP [dm3] 2L_4082497_SNP [dm6]	A	T	3.849e^-4	0.963	INTRON ed
3R	25758990	3R_25758990_SNP [dm3] 3R_29933268_SNP [dm6]	A	T	3.851e^-4	0.963	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9622630	3L_9622630_SNP [dm3] 3L_9629530_SNP [dm6]	T	A	3.853e^-4	0.963	UPSTREAM CG8336 & 1 other INTRON CG8336	TF binding site BDTNP1_TFBS_dl
2L	4010943	2L_4010943_SNP [dm3] 2L_4010943_SNP [dm6]	G	A	3.871e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10408005	2L_10408005_SNP [dm3] 2L_10408005_SNP [dm6]	T	A	3.876e^-4	0.963	NON_SYNONYMOUS_CODING Ir31a UPSTREAM RpS27A & 1 other INTRON Ir31a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16231509	2R_16231509_SNP [dm3] 2R_20344004_SNP [dm6]	A	T	3.877e^-4	0.963	INTRON CG13870	TF binding site mE1_TFBS_inv
3L	13219064	3L_13219064_SNP [dm3] 3L_13225964_SNP [dm6]	G	A	3.885e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2R	14278378	2R_14278378_SNP [dm3] 2R_18390873_SNP [dm6]	G	T	3.886e^-4	0.963	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3L	3769024	3L_3769024_SNP [dm3] 3L_3769024_SNP [dm6]	T	C	3.888e^-4	0.963	INTRON CG32264
2L	8568832	2L_8568832_SNP [dm3] 2L_8568832_SNP [dm6]	T	G	3.890e^-4	0.963	INTRON Sema-1a
3L	10722974	3L_10722974_SNP [dm3] 3L_10729874_SNP [dm6]	T	A	3.891e^-4	0.963	INTERGENIC
2L	19400412	2L_19400412_SNP [dm3] 2L_19400412_SNP [dm6]	T	A	3.903e^-4	0.963	DOWNSTREAM Pax INTERGENIC	transposable element FlyBase
2R	19057208	2R_19057208_SNP [dm3] 2R_23169685_SNP [dm6]	C	A	3.904e^-4	0.963	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11037877	2L_11037877_SNP [dm3] 2L_11037877_SNP [dm6]	A	T	3.916e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10526749	2L_10526749_SNP [dm3] 2L_10526749_SNP [dm6]	T	A	3.919e^-4	0.963	UPSTREAM Lip4 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	12564764	3R_12564764_SNP [dm3] 3R_16739042_SNP [dm6]	T	C	3.931e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25407515	3R_25407515_SNP [dm3] 3R_29581793_SNP [dm6]	G	A	3.941e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2806934	X_2806934_SNP [dm3] X_2912901_SNP [dm6]	C	A	3.950e^-4	0.963	INTRON kirre
3R	14486554	3R_14486554_SNP [dm3] 3R_18660832_SNP [dm6]	G	A	3.956e^-4	0.963	SYNONYMOUS_CODING CstF-64 DOWNSTREAM Cpsf73	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	4026193	3L_4026193_SNP [dm3] 3L_4026193_SNP [dm6]	T	C	3.962e^-4	0.963	UPSTREAM CG11594 & 1 other INTERGENIC
3R	15245856	3R_15245856_SNP [dm3] 3R_19420134_SNP [dm6]	A	C	3.963e^-4	0.963	INTRON CG31221
3L	3186473	3L_3186473_SNP [dm3] 3L_3186473_SNP [dm6]	G	T	3.967e^-4	0.963	UTR_3_PRIME CG42494 UPSTREAM CG32284
2L	18935245	2L_18935245_SNP [dm3] 2L_18935245_SNP [dm6]	A	G	3.972e^-4	0.963	INTRON ssp3	TF binding site mE1_TFBS_HSA
X	12443457	X_12443457_SNP [dm3] X_12549424_SNP [dm6]	A	T	3.974e^-4	0.963	INTRON CG43921
X	14851718	X_14851718_SNP [dm3] X_14957685_SNP [dm6]	G	C	3.984e^-4	0.963	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	6096974	3L_6096974_SNP [dm3] 3L_6103874_SNP [dm6]	T	C	3.990e^-4	0.963	INTRON Ets65A
2R	4204554	2R_4204554_SNP [dm3] 2R_8317049_SNP [dm6]	G	T	3.991e^-4	0.963	INTERGENIC
2L	8993761	2L_8993761_SNP [dm3] 2L_8993761_SNP [dm6]	T	G	3.996e^-4	0.963	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
3R	13723501	3R_13723501_SNP [dm3] 3R_17897779_SNP [dm6]	C	A	3.996e^-4	0.963	INTRON Rim
2L	6060598	2L_6060598_SNP [dm3] 2L_6060598_SNP [dm6]	C	A	4.001e^-4	0.963	NON_SYNONYMOUS_CODING CG34180 DOWNSTREAM CG9140 & 1 other
2R	9102741	2R_9102741_SNP [dm3] 2R_13215236_SNP [dm6]	G	T	4.006e^-4	0.963	NON_SYNONYMOUS_CODING CG4627 UPSTREAM AQP DOWNSTREAM CG4630	TF binding site BDTNP1_TFBS_dl
3R	13682449	3R_13682449_SNP [dm3] 3R_17856727_SNP [dm6]	G	A	4.013e^-4	0.963	INTRON tinc
3R	10689410	3R_10689410_SNP [dm3] 3R_14863688_SNP [dm6]	A	T	4.016e^-4	0.963	INTRON btsz
3R	24085271	3R_24085271_SNP [dm3] 3R_28259549_SNP [dm6]	C	G	4.021e^-4	0.963	INTERGENIC
3L	14183327	3L_14183327_SNP [dm3] 3L_14190227_SNP [dm6]	G	A	4.022e^-4	0.963	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
2L	8995429	2L_8995429_SNP [dm3] 2L_8995429_SNP [dm6]	C	T	4.025e^-4	0.963	SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien
2R	2479281	2R_2479281_SNP [dm3] 2R_6591776_SNP [dm6]	G	C	4.026e^-4	0.963	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17840166	2R_17840166_SNP [dm3] 2R_21952661_SNP [dm6]	T	A	4.032e^-4	0.963	DOWNSTREAM CG13488 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	13975508	2L_13975508_SNP [dm3] 2L_13975508_SNP [dm6]	T	G	4.034e^-4	0.963	SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3922065	3L_3922065_SNP [dm3] 3L_3922065_SNP [dm6]	A	C	4.034e^-4	0.963	INTRON Eip63F-1
3L	7094045	3L_7094045_SNP [dm3] 3L_7100945_SNP [dm6]	C	T	4.042e^-4	0.963	INTRON form3
3L	2390132	3L_2390132_SNP [dm3] 3L_2390132_SNP [dm6]	A	G	4.051e^-4	0.963	SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186
3R	10631197	3R_10631197_SNP [dm3] 3R_14805475_SNP [dm6]	T	C	4.057e^-4	0.963	UTR_3_PRIME btsz
X	16700859	X_16700859_SNP [dm3] X_16806826_SNP [dm6]	C	G	4.061e^-4	0.963	SYNONYMOUS_CODING ppk28 EXON CR44053
3R	23119403	3R_23119403_SNP [dm3] 3R_27293681_SNP [dm6]	C	T	4.062e^-4	0.963	DOWNSTREAM CG3339 INTERGENIC
2R	1112534	2R_1112534_SNP [dm3] 2R_5225029_SNP [dm6]	G	A	4.063e^-4	0.963	INTRON Nipped-A	transposable element FlyBase
2R	5102662	2R_5102662_SNP [dm3] 2R_9215157_SNP [dm6]	A	C	4.087e^-4	0.963	DOWNSTREAM CR44451 INTERGENIC
2L	9589335	2L_9589335_SNP [dm3] 2L_9589335_SNP [dm6]	T	A	4.089e^-4	0.963	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
3L	5435849	3L_5435849_SNP [dm3] 3L_5442749_SNP [dm6]	G	A	4.090e^-4	0.963	DOWNSTREAM CG34391 INTERGENIC
3R	19300698	3R_19300698_SNP [dm3] 3R_23474976_SNP [dm6]	G	A	4.094e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	3184225	X_3184225_SNP [dm3] X_3290192_SNP [dm6]	A	C	4.095e^-4	0.963	UTR_5_PRIME dnc UPSTREAM dnc INTRON dnc
3R	11239762	3R_11239762_SNP [dm3] 3R_15414040_SNP [dm6]	G	A	4.098e^-4	0.963	SYNONYMOUS_CODING Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19211727	3R_19211727_SNP [dm3] 3R_23386005_SNP [dm6]	C	T	4.129e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19598989	2L_19598989_INS [dm3] 2L_19598989_INS [dm6]	A	AA	4.151e^-4	0.963	INTRON Lar
3L	4027268	3L_4027268_SNP [dm3] 3L_4027268_SNP [dm6]	C	T	4.155e^-4	0.963	SPLICE_SITE_REGION Gr64a INTRON Gr64a
2R	17783257	2R_17783257_SNP [dm3] 2R_21895752_SNP [dm6]	C	G	4.162e^-4	0.963	INTRON Fili
3R	26088323	3R_26088323_SNP [dm3] 3R_30262601_SNP [dm6]	G	A	4.164e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	10723426	3L_10723426_SNP [dm3] 3L_10730326_SNP [dm6]	G	T	4.164e^-4	0.963	INTERGENIC
3R	26088317	3R_26088317_SNP [dm3] 3R_30262595_SNP [dm6]	A	T	4.179e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	7075694	2L_7075694_MNP [dm3] 2L_7075694_MNP [dm6]	TGG	CTA	4.189e^-4	0.963	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7255811	3L_7255811_SNP [dm3] 3L_7262711_SNP [dm6]	T	A	4.190e^-4	0.963	INTRON CG14830
2L	11037879	2L_11037879_SNP [dm3] 2L_11037879_SNP [dm6]	C	G	4.190e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2962513	3L_2962513_SNP [dm3] 3L_2962513_SNP [dm6]	T	C	4.197e^-4	0.963	UTR_3_PRIME Or63a INTRON Or63a
3R	10417539	3R_10417539_SNP [dm3] 3R_14591817_SNP [dm6]	T	A	4.202e^-4	0.963	UTR_5_PRIME stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24085241	3R_24085241_SNP [dm3] 3R_28259519_SNP [dm6]	G	T	4.205e^-4	0.963	INTERGENIC
2L	7465140	2L_7465140_SNP [dm3] 2L_7465140_SNP [dm6]	A	C	4.207e^-4	0.963	INTERGENIC
3L	10711578	3L_10711578_SNP [dm3] 3L_10718478_SNP [dm6]	G	C	4.214e^-4	0.963	INTERGENIC
2L	7495115	2L_7495115_SNP [dm3] 2L_7495115_SNP [dm6]	G	T	4.221e^-4	0.963	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7014213	2L_7014213_SNP [dm3] 2L_7014213_SNP [dm6]	C	T	4.224e^-4	0.963	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
3L	17905197	3L_17905197_SNP [dm3] 3L_17912097_SNP [dm6]	A	C	4.229e^-4	0.963	NON_SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	12757521	2L_12757521_SNP [dm3] 2L_12757521_SNP [dm6]	C	T	4.232e^-4	0.963	INTERGENIC
3R	13790884	3R_13790884_DEL [dm3] 3R_17965162_DEL [dm6]	TTATCGCCTGCATATTTTGT...	G	4.242e^-4	0.963	INTRON cpo
3L	2962491	3L_2962491_SNP [dm3] 3L_2962491_SNP [dm6]	A	T	4.244e^-4	0.963	STOP_LOST Or63a SPLICE_SITE_REGION Or63a INTRON Or63a
3L	1251952	3L_1251952_SNP [dm3] 3L_1251952_SNP [dm6]	A	T	4.252e^-4	0.963	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
X	19610765	X_19610765_SNP [dm3] X_19716732_SNP [dm6]	T	A	4.255e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19906303	X_19906303_SNP [dm3] X_20012270_SNP [dm6]	C	T	4.260e^-4	0.963	INTRON Dop2R
X	5118953	X_5118953_SNP [dm3] X_5224920_SNP [dm6]	T	A	4.263e^-4	0.963	INTRON CG15465 & 1 other
2L	16338338	2L_16338338_SNP [dm3] 2L_16338338_SNP [dm6]	G	A	4.267e^-4	0.963	SYNONYMOUS_CODING CG42266 UPSTREAM CG31817	TF binding site mE1_TFBS_sens
2L	19400577	2L_19400577_SNP [dm3] 2L_19400577_SNP [dm6]	A	T	4.267e^-4	0.963	DOWNSTREAM Pax INTERGENIC
2R	18753246	2R_18753246_SNP [dm3] 2R_22865723_SNP [dm6]	G	A	4.277e^-4	0.963	INTERGENIC
X	14444210	X_14444210_SNP [dm3] X_14550177_SNP [dm6]	C	T	4.282e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17783023	2R_17783023_SNP [dm3] 2R_21895518_SNP [dm6]	C	A	4.288e^-4	0.963	INTRON Fili
3L	2628962	3L_2628962_SNP [dm3] 3L_2628962_SNP [dm6]	C	A	4.290e^-4	0.963	DOWNSTREAM CR45660 INTRON Pxn
3L	8540103	3L_8540103_DEL [dm3] 3L_8547003_DEL [dm6]	AC	A	4.305e^-4	0.963	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13274025	3L_13274025_SNP [dm3] 3L_13280925_SNP [dm6]	T	C	4.313e^-4	0.963	INTERGENIC
3R	23182188	3R_23182188_SNP [dm3] 3R_27356466_SNP [dm6]	G	A	4.317e^-4	0.963	INTRON CG42534
X	21182122	X_21182122_SNP [dm3] X_21311095_SNP [dm6]	G	T	4.321e^-4	0.963	SYNONYMOUS_CODING CG1801	TF binding site mE1_TFBS_sens
2R	18335835	2R_18335835_DEL [dm3] 2R_22448330_DEL [dm6]	CC	C	4.324e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15672988	2R_15672988_SNP [dm3] 2R_19785483_SNP [dm6]	C	T	4.326e^-4	0.963	EXON CR45231	regulatory region REDfly_CRMs
3L	13160795	3L_13160795_SNP [dm3] 3L_13167695_SNP [dm6]	G	T	4.336e^-4	0.963	INTERGENIC
2R	17731614	2R_17731614_SNP [dm3] 2R_21844109_SNP [dm6]	C	T	4.336e^-4	0.963	UPSTREAM tRNA:CR30407 INTERGENIC
X	12285416	X_12285416_SNP [dm3] X_12391383_SNP [dm6]	A	T	4.348e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16448795	2R_16448795_SNP [dm3] 2R_20561290_SNP [dm6]	C	T	4.371e^-4	0.963	UPSTREAM CR44653 INTRON Mgat1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10526750	2L_10526750_SNP [dm3] 2L_10526750_SNP [dm6]	T	C	4.373e^-4	0.963	UPSTREAM Lip4 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	12136429	2L_12136429_SNP [dm3] 2L_12136429_SNP [dm6]	C	T	4.379e^-4	0.963	INTERGENIC
2L	8568859	2L_8568859_SNP [dm3] 2L_8568859_SNP [dm6]	G	T	4.383e^-4	0.963	INTRON Sema-1a
3L	14923667	3L_14923667_SNP [dm3] 3L_14930567_SNP [dm6]	G	A	4.387e^-4	0.963	INTRON DCX-EMAP
2L	1979606	2L_1979606_SNP [dm3] 2L_1979606_SNP [dm6]	A	C	4.393e^-4	0.963	INTRON CG15356	TF binding site mE1_TFBS_HSA
2R	14993328	2R_14993328_SNP [dm3] 2R_19105823_SNP [dm6]	A	T	4.404e^-4	0.963	INTRON 5-HT1A
2L	8568856	2L_8568856_SNP [dm3] 2L_8568856_SNP [dm6]	A	C	4.407e^-4	0.963	INTRON Sema-1a
3L	18218241	3L_18218241_SNP [dm3] 3L_18225141_SNP [dm6]	A	T	4.416e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	5967994	X_5967994_SNP [dm3] X_6073961_SNP [dm6]	G	T	4.419e^-4	0.963	UPSTREAM Tsp5D INTRON Tsp5D
X	6950578	X_6950578_SNP [dm3] X_7056545_SNP [dm6]	A	G	4.427e^-4	0.963	INTRON CG12541	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1388696	2R_1388696_SNP [dm3] 2R_5501191_SNP [dm6]	A	G	4.427e^-4	0.963	INTRON CG30438	transposable element FlyBase
3R	13794550	3R_13794550_SNP [dm3] 3R_17968828_SNP [dm6]	A	G	4.437e^-4	0.963	INTRON cpo
2L	4011004	2L_4011004_DEL [dm3] 2L_4011004_DEL [dm6]	AA	A	4.443e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16798584	2L_16798584_SNP [dm3] 2L_16798584_SNP [dm6]	C	G	4.447e^-4	0.963	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
3L	6773118	3L_6773118_SNP [dm3] 3L_6780018_SNP [dm6]	A	G	4.447e^-4	0.963	INTERGENIC
3L	15237131	3L_15237131_SNP [dm3] 3L_15244031_SNP [dm6]	A	C	4.452e^-4	0.963	INTERGENIC
2R	7400309	2R_7400309_SNP [dm3] 2R_11512804_SNP [dm6]	A	T	4.453e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13411310	3R_13411310_SNP [dm3] 3R_17585588_SNP [dm6]	G	A	4.463e^-4	0.963	INTERGENIC
X	5158698	X_5158698_INS [dm3] X_5264665_INS [dm6]	T	TTCA	4.465e^-4	0.963	INTERGENIC
2R	9366082	2R_9366082_SNP [dm3] 2R_13478577_SNP [dm6]	T	A	4.468e^-4	0.963	DOWNSTREAM CG43192 INTRON arr
2R	6804155	2R_6804155_SNP [dm3] 2R_10916650_SNP [dm6]	C	G	4.469e^-4	0.963	INTERGENIC
2L	20361474	2L_20361474_DEL [dm3] 2L_20361474_DEL [dm6]	GT	G	4.475e^-4	0.963	DOWNSTREAM RtGEF INTRON RtGEF	TF binding site mE1_TFBS_HSA
2R	8425337	2R_8425337_SNP [dm3] 2R_12537832_SNP [dm6]	T	C	4.476e^-4	0.963	INTRON fra
2L	15739980	2L_15739980_SNP [dm3] 2L_15739980_SNP [dm6]	C	A	4.481e^-4	0.963	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19906071	3R_19906071_SNP [dm3] 3R_24080349_SNP [dm6]	C	T	4.496e^-4	0.963	INTRON 4EHP
3L	2182094	3L_2182094_INS [dm3] 3L_2182094_INS [dm6]	A	GCT	4.501e^-4	0.963	INTERGENIC
2L	18970276	2L_18970276_SNP [dm3] 2L_18970276_SNP [dm6]	T	C	4.516e^-4	0.963	SYNONYMOUS_CODING Tango6	TF binding site mE1_TFBS_hkb mE1_TFBS_sens
2L	11037880	2L_11037880_SNP [dm3] 2L_11037880_SNP [dm6]	G	C	4.523e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037883	2L_11037883_SNP [dm3] 2L_11037883_SNP [dm6]	A	G	4.523e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4244073	2L_4244073_SNP [dm3] 2L_4244073_SNP [dm6]	C	A	4.530e^-4	0.963	INTERGENIC
2L	2815406	2L_2815406_SNP [dm3] 2L_2815406_SNP [dm6]	A	G	4.534e^-4	0.963	SYNONYMOUS_CODING CG15400 DOWNSTREAM CG2964 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13913080	2R_13913080_SNP [dm3] 2R_18025575_SNP [dm6]	G	A	4.544e^-4	0.963	INTERGENIC
3L	1259829	3L_1259829_SNP [dm3] 3L_1259829_SNP [dm6]	T	G	4.552e^-4	0.963	INTRON CG9134
2R	8484964	2R_8484964_SNP [dm3] 2R_12597459_SNP [dm6]	G	A	4.552e^-4	0.963	INTRON Amph
3R	10691025	3R_10691025_SNP [dm3] 3R_14865303_SNP [dm6]	T	C	4.556e^-4	0.963	INTRON btsz
2R	16381558	2R_16381558_SNP [dm3] 2R_20494053_SNP [dm6]	C	A	4.558e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3717941	3L_3717941_SNP [dm3] 3L_3717941_SNP [dm6]	A	T	4.561e^-4	0.963	INTRON CG32264
X	6087518	X_6087518_SNP [dm3] X_6193485_SNP [dm6]	A	G	4.566e^-4	0.963	INTERGENIC
2L	16339787	2L_16339787_SNP [dm3] 2L_16339787_SNP [dm6]	C	A	4.574e^-4	0.963	NON_SYNONYMOUS_CODING CG42266 DOWNSTREAM CG44405
3R	15002677	3R_15002677_SNP [dm3] 3R_19176955_SNP [dm6]	A	C	4.579e^-4	0.963	UPSTREAM CG14282 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11801838	2R_11801838_SNP [dm3] 2R_15914333_SNP [dm6]	C	G	4.586e^-4	0.963	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5443832	3L_5443832_SNP [dm3] 3L_5450732_SNP [dm6]	A	G	4.595e^-4	0.963	INTERGENIC
2L	18969422	2L_18969422_SNP [dm3] 2L_18969422_SNP [dm6]	C	T	4.606e^-4	0.963	NON_SYNONYMOUS_CODING Tango6 UPSTREAM Nak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13577889	2L_13577889_SNP [dm3] 2L_13577889_SNP [dm6]	A	G	4.607e^-4	0.963	INTRON kuz
3R	12789877	3R_12789877_SNP [dm3] 3R_16964155_SNP [dm6]	G	A	4.609e^-4	0.963	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15672985	2R_15672985_SNP [dm3] 2R_19785480_SNP [dm6]	G	C	4.616e^-4	0.963	EXON CR45231	regulatory region REDfly_CRMs
2R	8915386	2R_8915386_SNP [dm3] 2R_13027881_SNP [dm6]	A	G	4.617e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17911017	3L_17911017_SNP [dm3] 3L_17917917_SNP [dm6]	C	T	4.627e^-4	0.963	INTERGENIC
3L	2122385	3L_2122385_DEL [dm3] 3L_2122385_DEL [dm6]	GGTG	G	4.632e^-4	0.963	DOWNSTREAM zormin INTRON zormin
X	16583376	X_16583376_SNP [dm3] X_16689343_SNP [dm6]	C	T	4.633e^-4	0.963	INTRON Sep4
3L	3627684	3L_3627684_SNP [dm3] 3L_3627684_SNP [dm6]	G	T	4.639e^-4	0.963	INTRON dar1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	3562317	3L_3562317_SNP [dm3] 3L_3562317_SNP [dm6]	T	A	4.644e^-4	0.963	INTRON Eip63E
2L	10293562	2L_10293562_SNP [dm3] 2L_10293562_SNP [dm6]	A	T	4.648e^-4	0.963	INTRON Hand	regulatory region REDfly_CRMs
3L	6773003	3L_6773003_SNP [dm3] 3L_6779903_SNP [dm6]	A	G	4.651e^-4	0.963	INTERGENIC
X	16621572	X_16621572_SNP [dm3] X_16727539_SNP [dm6]	G	A	4.669e^-4	0.963	UTR_3_PRIME CG9634 DOWNSTREAM CG32572
2R	15830158	2R_15830158_INS [dm3] 2R_19942653_INS [dm6]	T	TTTA	4.671e^-4	0.963	INTERGENIC
X	8759587	X_8759587_SNP [dm3] X_8865554_SNP [dm6]	T	C	4.671e^-4	0.963	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	19513744	2L_19513744_SNP [dm3] 2L_19513744_SNP [dm6]	A	G	4.674e^-4	0.963	SYNONYMOUS_CODING CG10186 DOWNSTREAM CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17414672	2L_17414672_SNP [dm3] 2L_17414672_SNP [dm6]	T	C	4.681e^-4	0.963	DOWNSTREAM Dif INTRON Dif
3R	23960534	3R_23960534_SNP [dm3] 3R_28134812_SNP [dm6]	C	G	4.683e^-4	0.963	INTERGENIC
3R	17879643	3R_17879643_SNP [dm3] 3R_22053921_SNP [dm6]	C	T	4.689e^-4	0.963	INTRON how	TF binding site BDTNP1_TFBS_dl
2R	12020872	2R_12020872_SNP [dm3] 2R_16133367_SNP [dm6]	T	A	4.693e^-4	0.963	INTRON spin	TF binding site mE1_TFBS_cad
2L	18922402	2L_18922402_SNP [dm3] 2L_18922402_SNP [dm6]	A	C	4.702e^-4	0.963	INTRON ssp3
2L	19194934	2L_19194934_SNP [dm3] 2L_19194934_SNP [dm6]	A	T	4.703e^-4	0.963	INTRON drl	regulatory region REDfly_CRMs
3L	17628288	3L_17628288_SNP [dm3] 3L_17635188_SNP [dm6]	A	G	4.713e^-4	0.963	INTRON CG7497
3L	7003222	3L_7003222_SNP [dm3] 3L_7010122_SNP [dm6]	C	G	4.721e^-4	0.963	INTRON Mp
2R	19701968	2R_19701968_SNP [dm3] 2R_23814445_SNP [dm6]	G	A	4.743e^-4	0.963	SYNONYMOUS_CODING CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
X	3229698	X_3229698_SNP [dm3] X_3335665_SNP [dm6]	G	C	4.747e^-4	0.963	INTRON CR44886 & 1 other
3L	9842236	3L_9842236_SNP [dm3] 3L_9849136_SNP [dm6]	T	C	4.757e^-4	0.963	INTRON RasGAP1
X	13343154	X_13343154_SNP [dm3] X_13449121_SNP [dm6]	G	C	4.763e^-4	0.963	INTRON Neto
3L	1361345	3L_1361345_DEL [dm3] 3L_1361345_DEL [dm6]	CCTCCGCTCTGGCCGGCGAA...	C	4.773e^-4	0.963	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3R	13970246	3R_13970246_SNP [dm3] 3R_18144524_SNP [dm6]	G	T	4.779e^-4	0.963	INTERGENIC
3L	13424813	3L_13424813_SNP [dm3] 3L_13431713_SNP [dm6]	T	G	4.783e^-4	0.963	INTRON CG10713
2R	14342615	2R_14342615_DEL [dm3] 2R_18455110_DEL [dm6]	CTC	C	4.790e^-4	0.963	UPSTREAM CG17669 INTERGENIC
3L	2175085	3L_2175085_SNP [dm3] 3L_2175085_SNP [dm6]	T	G	4.796e^-4	0.963	UPSTREAM CG15820 INTERGENIC
2L	10409559	2L_10409559_SNP [dm3] 2L_10409559_SNP [dm6]	C	T	4.798e^-4	0.963	UTR_3_PRIME Ip259 DOWNSTREAM CG5355 INTRON RpS27A	TF binding site mE1_TFBS_sens
2L	10409596	2L_10409596_SNP [dm3] 2L_10409596_SNP [dm6]	A	G	4.798e^-4	0.963	UTR_3_PRIME Ip259 DOWNSTREAM CG5355 INTRON RpS27A	TF binding site mE1_TFBS_sens
3L	2919878	3L_2919878_SNP [dm3] 3L_2919878_SNP [dm6]	A	G	4.802e^-4	0.963	INTRON Shab
2R	9631700	2R_9631700_SNP [dm3] 2R_13744195_SNP [dm6]	T	A	4.815e^-4	0.963	INTRON fas
3L	11178059	3L_11178059_SNP [dm3] 3L_11184959_SNP [dm6]	C	T	4.828e^-4	0.963	INTRON GlcAT-P
2L	15766289	2L_15766289_SNP [dm3] 2L_15766289_SNP [dm6]	T	G	4.828e^-4	0.963	UTR_3_PRIME wek DOWNSTREAM wek & 1 other
2R	5908200	2R_5908200_SNP [dm3] 2R_10020695_SNP [dm6]	G	A	4.832e^-4	0.963	INTRON Pka-R2
2L	17476666	2L_17476666_SNP [dm3] 2L_17476666_SNP [dm6]	T	A	4.833e^-4	0.963	INTRON Aac11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	9655986	2R_9655986_SNP [dm3] 2R_13768481_SNP [dm6]	G	A	4.835e^-4	0.963	INTERGENIC
2R	9657910	2R_9657910_SNP [dm3] 2R_13770405_SNP [dm6]	A	C	4.838e^-4	0.963	INTRON Cpr50Ca
2L	19228552	2L_19228552_SNP [dm3] 2L_19228552_SNP [dm6]	T	C	4.845e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sbb
X	8955474	X_8955474_DEL [dm3] X_9061441_DEL [dm6]	AGTC	A	4.848e^-4	0.963	UPSTREAM CG15365 INTRON CG15365
2L	15758854	2L_15758854_SNP [dm3] 2L_15758854_SNP [dm6]	G	A	4.849e^-4	0.963	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23022773	3R_23022773_SNP [dm3] 3R_27197051_SNP [dm6]	A	G	4.855e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	19057212	2R_19057212_SNP [dm3] 2R_23169689_SNP [dm6]	C	A	4.855e^-4	0.963	INTRON CG34371	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16329315	2L_16329315_SNP [dm3] 2L_16329315_SNP [dm6]	T	C	4.856e^-4	0.963	UPSTREAM CG4440 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8568848	2L_8568848_SNP [dm3] 2L_8568848_SNP [dm6]	G	C	4.868e^-4	0.963	INTRON Sema-1a
3L	14183914	3L_14183914_SNP [dm3] 3L_14190814_SNP [dm6]	T	C	4.880e^-4	0.963	UPSTREAM nuf INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10711593	3L_10711593_SNP [dm3] 3L_10718493_SNP [dm6]	T	G	4.889e^-4	0.963	INTERGENIC
3L	19829620	3L_19829620_DEL [dm3] 3L_19836520_DEL [dm6]	TA	T	4.894e^-4	0.963	UPSTREAM kto DOWNSTREAM CG32221 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14188828	3L_14188828_SNP [dm3] 3L_14195728_SNP [dm6]	T	G	4.896e^-4	0.963	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	18464649	2R_18464649_DEL [dm3] 2R_22577144_DEL [dm6]	TCCGCGCTCTCCACTGCTTT...	T	4.899e^-4	0.963	INTRON dnr1
2L	11526914	2L_11526914_SNP [dm3] 2L_11526914_SNP [dm6]	T	A	4.909e^-4	0.963	INTRON CG31705
2R	5117643	2R_5117643_SNP [dm3] 2R_9230138_SNP [dm6]	C	T	4.910e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19410758	2R_19410758_SNP [dm3] 2R_23523235_SNP [dm6]	G	T	4.910e^-4	0.963	SYNONYMOUS_CODING RabX1 UPSTREAM mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9877015	3R_9877015_SNP [dm3] 3R_14051293_SNP [dm6]	G	C	4.911e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8609264	2R_8609264_INS [dm3] 2R_12721759_INS [dm6]	T	TATGAA	4.925e^-4	0.963	INTRON CG42663
2R	8609267	2R_8609267_SNP [dm3] 2R_12721762_SNP [dm6]	G	T	4.925e^-4	0.963	INTRON CG42663
2R	8609268	2R_8609268_DEL [dm3] 2R_12721763_DEL [dm6]	GAAAAC	G	4.925e^-4	0.963	INTRON CG42663
3R	15002369	3R_15002369_DEL [dm3] 3R_19176647_DEL [dm6]	TT	T	4.930e^-4	0.963	UPSTREAM CG14282 INTERGENIC
X	20614400	X_20614400_SNP [dm3] X_20743373_SNP [dm6]	T	C	4.948e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_sens
2R	14346690	2R_14346690_DEL [dm3] 2R_18459185_DEL [dm6]	AGAGTTGGC	A	4.948e^-4	0.963	DOWNSTREAM CG30116 INTRON CG30116
2L	5457366	2L_5457366_MNP [dm3] 2L_5457366_MNP [dm6]	ACAATT	TGTTAC	4.951e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	17879472	3R_17879472_SNP [dm3] 3R_22053750_SNP [dm6]	T	C	4.957e^-4	0.963	INTRON how
2L	15610258	2L_15610258_SNP [dm3] 2L_15610258_SNP [dm6]	C	G	4.966e^-4	0.963	UTR_3_PRIME CG15255 DOWNSTREAM CG15255 EXON CR44865
3R	24605385	3R_24605385_SNP [dm3] 3R_28779663_SNP [dm6]	C	T	4.973e^-4	0.963	INTERGENIC
2L	10614164	2L_10614164_SNP [dm3] 2L_10614164_SNP [dm6]	A	G	4.979e^-4	0.963	INTRON Trim9
2R	15672976	2R_15672976_SNP [dm3] 2R_19785471_SNP [dm6]	T	C	4.980e^-4	0.963	EXON CR45231	regulatory region REDfly_CRMs
3L	10555494	3L_10555494_SNP [dm3] 3L_10562394_SNP [dm6]	T	A	4.981e^-4	0.963	INTRON A2bp1
2L	13824041	2L_13824041_SNP [dm3] 2L_13824041_SNP [dm6]	G	T	4.985e^-4	0.963	UTR_3_PRIME tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12761698	2L_12761698_SNP [dm3] 2L_12761698_SNP [dm6]	T	C	4.990e^-4	0.963	NON_SYNONYMOUS_CODING CG15483
2R	8872483	2R_8872483_SNP [dm3] 2R_12984978_SNP [dm6]	T	C	4.990e^-4	0.963	UPSTREAM CR44339 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	9994403	3R_9994403_SNP [dm3] 3R_14168681_SNP [dm6]	A	C	4.996e^-4	0.963	UTR_3_PRIME Dop1R1
3R	13776759	3R_13776759_SNP [dm3] 3R_17951037_SNP [dm6]	C	G	4.997e^-4	0.963	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8759584	X_8759584_SNP [dm3] X_8865551_SNP [dm6]	A	T	4.998e^-4	0.963	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	11037893	2L_11037893_SNP [dm3] 2L_11037893_SNP [dm6]	G	A	5.009e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10262449	3L_10262449_SNP [dm3] 3L_10269349_SNP [dm6]	G	T	5.009e^-4	0.963	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2L	10482166	2L_10482166_SNP [dm3] 2L_10482166_SNP [dm6]	T	C	5.013e^-4	0.963	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2	TF binding site mE1_TFBS_sens
2R	6184280	2R_6184280_SNP [dm3] 2R_10296775_SNP [dm6]	A	T	5.014e^-4	0.963	SYNONYMOUS_CODING CAP INTRON CAP
3R	16996988	3R_16996988_SNP [dm3] 3R_21171266_SNP [dm6]	A	T	5.014e^-4	0.963	INTRON SNF4Agamma
2L	19226353	2L_19226353_SNP [dm3] 2L_19226353_SNP [dm6]	C	G	5.023e^-4	0.963	INTERGENIC
3R	9877004	3R_9877004_SNP [dm3] 3R_14051282_SNP [dm6]	T	A	5.027e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5386447	3L_5386447_SNP [dm3] 3L_5393347_SNP [dm6]	A	G	5.037e^-4	0.963	INTERGENIC
3R	10689502	3R_10689502_SNP [dm3] 3R_14863780_SNP [dm6]	A	G	5.042e^-4	0.963	INTRON btsz
3R	25116701	3R_25116701_SNP [dm3] 3R_29290979_SNP [dm6]	A	G	5.044e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	15672982	2R_15672982_SNP [dm3] 2R_19785477_SNP [dm6]	A	G	5.044e^-4	0.963	EXON CR45231	regulatory region REDfly_CRMs
2R	2464467	2R_2464467_SNP [dm3] 2R_6576962_SNP [dm6]	C	G	5.053e^-4	0.963	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3880413	3L_3880413_SNP [dm3] 3L_3880413_SNP [dm6]	G	C	5.057e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	7467137	2L_7467137_SNP [dm3] 2L_7467137_SNP [dm6]	G	T	5.061e^-4	0.963	INTRON CG6055	TF binding site mE1_TFBS_inv
2L	8993785	2L_8993785_SNP [dm3] 2L_8993785_SNP [dm6]	C	G	5.068e^-4	0.963	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
X	19906223	X_19906223_SNP [dm3] X_20012190_SNP [dm6]	A	G	5.079e^-4	0.963	INTRON Dop2R
2R	17098661	2R_17098661_SNP [dm3] 2R_21211156_SNP [dm6]	C	T	5.081e^-4	0.963	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
X	19906147	X_19906147_SNP [dm3] X_20012114_SNP [dm6]	T	A	5.089e^-4	0.963	INTRON Dop2R
X	17026940	X_17026940_SNP [dm3] X_17132907_SNP [dm6]	C	A	5.096e^-4	0.963	UPSTREAM CG5004 INTRON CG5004
2L	12135992	2L_12135992_SNP [dm3] 2L_12135992_SNP [dm6]	C	A	5.103e^-4	0.963	INTERGENIC
3L	984386	3L_984386_SNP [dm3] 3L_984386_SNP [dm6]	C	G	5.104e^-4	0.963	UTR_3_PRIME Glut1 INTRON Glut1
2R	5121435	2R_5121435_SNP [dm3] 2R_9233930_SNP [dm6]	G	A	5.129e^-4	0.963	INTRON hig	TF binding site mE1_TFBS_cad
2R	19719460	2R_19719460_SNP [dm3] 2R_23831937_SNP [dm6]	G	C	5.152e^-4	0.963	INTRON CG5549
2R	15562884	2R_15562884_SNP [dm3] 2R_19675379_SNP [dm6]	T	A	5.155e^-4	0.963	INTERGENIC
3R	4851839	3R_4851839_SNP [dm3] 3R_9026117_SNP [dm6]	G	A	5.157e^-4	0.963	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11037867	2L_11037867_SNP [dm3] 2L_11037867_SNP [dm6]	G	A	5.160e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037919	2L_11037919_DEL [dm3] 2L_11037919_DEL [dm6]	AC	A	5.178e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	14564865	2L_14564865_SNP [dm3] 2L_14564865_SNP [dm6]	G	A	5.184e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	5440982	3L_5440982_SNP [dm3] 3L_5447882_SNP [dm6]	T	G	5.185e^-4	0.963	INTERGENIC
3R	13776771	3R_13776771_SNP [dm3] 3R_17951049_SNP [dm6]	G	T	5.187e^-4	0.963	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5404710	X_5404710_SNP [dm3] X_5510677_SNP [dm6]	G	A	5.189e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10312560	2R_10312560_DEL [dm3] 2R_14425055_DEL [dm6]	CC	C	5.194e^-4	0.963	DOWNSTREAM CG17386 INTERGENIC
3R	17836180	3R_17836180_SNP [dm3] 3R_22010458_SNP [dm6]	G	A	5.196e^-4	0.963	UTR_3_PRIME Eip93F
3R	15191471	3R_15191471_SNP [dm3] 3R_19365749_SNP [dm6]	C	T	5.197e^-4	0.963	INTERGENIC
2R	19041744	2R_19041744_SNP [dm3] 2R_23154221_SNP [dm6]	A	T	5.198e^-4	0.963	DOWNSTREAM CG43207 INTRON CG9899
2R	19041747	2R_19041747_SNP [dm3] 2R_23154224_SNP [dm6]	C	G	5.198e^-4	0.963	DOWNSTREAM CG43207 INTRON CG9899
2L	11536596	2L_11536596_SNP [dm3] 2L_11536596_SNP [dm6]	C	G	5.201e^-4	0.963	SYNONYMOUS_CODING CG43438
3R	11685400	3R_11685400_SNP [dm3] 3R_15859678_SNP [dm6]	G	A	5.215e^-4	0.963	SYNONYMOUS_CODING CG31183 UPSTREAM CG9632	TF binding site mE1_TFBS_chinmo
2L	3713668	2L_3713668_SNP [dm3] 2L_3713668_SNP [dm6]	G	T	5.215e^-4	0.963	UTR_5_PRIME CG2818 UPSTREAM CG31955 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2131268	3L_2131268_SNP [dm3] 3L_2131268_SNP [dm6]	G	A	5.218e^-4	0.963	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4809056	2L_4809056_SNP [dm3] 2L_4809056_SNP [dm6]	G	A	5.226e^-4	0.963	INTERGENIC
3L	10220458	3L_10220458_SNP [dm3] 3L_10227358_SNP [dm6]	T	A	5.227e^-4	0.963	INTERGENIC
3R	11257560	3R_11257560_SNP [dm3] 3R_15431838_SNP [dm6]	C	G	5.229e^-4	0.963	INTRON CG6118
2L	6734952	2L_6734952_SNP [dm3] 2L_6734952_SNP [dm6]	G	C	5.233e^-4	0.963	SYNONYMOUS_CODING TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8031644	3L_8031644_SNP [dm3] 3L_8038544_SNP [dm6]	C	T	5.238e^-4	0.963	INTRON nmo	TF binding site mE1_TFBS_inv
2L	18924065	2L_18924065_SNP [dm3] 2L_18924065_SNP [dm6]	A	G	5.238e^-4	0.963	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	5440835	3L_5440835_DEL [dm3] 3L_5447735_DEL [dm6]	AAAA	A	5.238e^-4	0.963	INTERGENIC
2L	11299187	2L_11299187_SNP [dm3] 2L_11299187_SNP [dm6]	G	A	5.241e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	280398	X_280398_SNP [dm3] X_386365_SNP [dm6]	T	G	5.251e^-4	0.963	DOWNSTREAM CR44752 INTRON CG32816
X	5457645	X_5457645_SNP [dm3] X_5563612_SNP [dm6]	C	T	5.257e^-4	0.963	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	8304798	2L_8304798_DEL [dm3] 2L_8304798_DEL [dm6]	TT	T	5.259e^-4	0.963	UPSTREAM CG7840 INTRON Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17616321	2R_17616321_SNP [dm3] 2R_21728816_SNP [dm6]	C	T	5.262e^-4	0.963	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5149396	3R_5149396_SNP [dm3] 3R_9323674_SNP [dm6]	A	G	5.270e^-4	0.963	INTRON CG8861
2R	4663154	2R_4663154_SNP [dm3] 2R_8775649_SNP [dm6]	A	T	5.277e^-4	0.963	INTERGENIC
2L	10364035	2L_10364035_DEL [dm3] 2L_10364035_DEL [dm6]	CAACAGGCAATTATATGTGT...	C	5.279e^-4	0.963	UTR_3_PRIME pim UPSTREAM lft DOWNSTREAM pim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	415223	2R_415223_SNP [dm3] 2R_4527718_SNP [dm6]	C	T	5.282e^-4	0.963	INTERGENIC	transposable element FlyBase
2L	12760474	2L_12760474_SNP [dm3] 2L_12760474_SNP [dm6]	C	T	5.283e^-4	0.963	SYNONYMOUS_CODING CG15483
2L	11037936	2L_11037936_DEL [dm3] 2L_11037936_DEL [dm6]	GTA	G	5.285e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	11037940	2L_11037940_DEL [dm3] 2L_11037940_DEL [dm6]	GTATCTTA	G	5.285e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	9755199	3R_9755199_SNP [dm3] 3R_13929477_SNP [dm6]	A	T	5.289e^-4	0.963	INTERGENIC
3R	22238694	3R_22238694_SNP [dm3] 3R_26412972_SNP [dm6]	T	C	5.290e^-4	0.963	INTERGENIC
2R	11789095	2R_11789095_SNP [dm3] 2R_15901590_SNP [dm6]	C	T	5.290e^-4	0.963	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8032907	3L_8032907_SNP [dm3] 3L_8039807_SNP [dm6]	A	C	5.290e^-4	0.963	INTRON nmo
2L	16341760	2L_16341760_SNP [dm3] 2L_16341760_SNP [dm6]	A	G	5.312e^-4	0.963	NON_SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
3R	15002685	3R_15002685_SNP [dm3] 3R_19176963_SNP [dm6]	A	G	5.317e^-4	0.963	UPSTREAM CG14282 INTERGENIC	TF binding site mE1_TFBS_cad
2L	7465380	2L_7465380_SNP [dm3] 2L_7465380_SNP [dm6]	C	T	5.319e^-4	0.963	INTERGENIC
X	4167850	X_4167850_SNP [dm3] X_4273817_SNP [dm6]	T	G	5.320e^-4	0.963	INTERGENIC
3L	17910857	3L_17910857_SNP [dm3] 3L_17917757_SNP [dm6]	T	C	5.320e^-4	0.963	INTERGENIC
3R	17836178	3R_17836178_INS [dm3] 3R_22010456_INS [dm6]	A	TAAT	5.321e^-4	0.963	UTR_3_PRIME Eip93F
2L	5097797	2L_5097797_SNP [dm3] 2L_5097797_SNP [dm6]	T	C	5.323e^-4	0.963	SYNONYMOUS_CODING CG4230
3L	17910849	3L_17910849_SNP [dm3] 3L_17917749_SNP [dm6]	G	T	5.323e^-4	0.963	INTERGENIC
3L	2122756	3L_2122756_INS [dm3] 3L_2122756_INS [dm6]	C	CT	5.336e^-4	0.963	UTR_3_PRIME zormin INTRON zormin
3R	20311645	3R_20311645_INS [dm3] 3R_24485923_INS [dm6]	T	TAT	5.338e^-4	0.963	UTR_5_PRIME nAChRalpha2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3922363	3L_3922363_INS [dm3] 3L_3922363_INS [dm6]	T	TT	5.340e^-4	0.963	INTRON Eip63F-1
3R	15002745	3R_15002745_DEL [dm3] 3R_19177023_DEL [dm6]	AAAATATTCTAC...	A	5.341e^-4	0.963	UTR_5_PRIME CG14282	TF binding site mE1_TFBS_cad
2L	12163177	2L_12163177_SNP [dm3] 2L_12163177_SNP [dm6]	T	C	5.345e^-4	0.963	DOWNSTREAM CG31861 INTRON CG31760
3L	11180322	3L_11180322_DEL [dm3] 3L_11187222_DEL [dm6]	AATGTTGGC	A	5.352e^-4	0.963	INTRON GlcAT-P
2R	14346865	2R_14346865_SNP [dm3] 2R_18459360_SNP [dm6]	G	T	5.355e^-4	0.963	DOWNSTREAM CG30116 INTRON CG30116
3L	9866398	3L_9866398_SNP [dm3] 3L_9873298_SNP [dm6]	A	C	5.363e^-4	0.963	INTERGENIC
X	19781951	X_19781951_SNP [dm3] X_19887918_SNP [dm6]	A	C	5.364e^-4	0.963	UTR_5_PRIME amn INTRON Hers	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19781953	X_19781953_DEL [dm3] X_19887920_DEL [dm6]	CACACACAA	C	5.364e^-4	0.963	UTR_5_PRIME amn INTRON Hers	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13921594	2R_13921594_SNP [dm3] 2R_18034089_SNP [dm6]	A	C	5.380e^-4	0.963	INTERGENIC
3L	14591418	3L_14591418_SNP [dm3] 3L_14598318_SNP [dm6]	G	A	5.386e^-4	0.963	SYNONYMOUS_CODING HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo
3R	14361680	3R_14361680_SNP [dm3] 3R_18535958_SNP [dm6]	A	T	5.406e^-4	0.963	INTRON fru
3R	26181664	3R_26181664_INS [dm3] 3R_30355942_INS [dm6]	T	TT	5.410e^-4	0.963	INTRON hdc
3L	8040289	3L_8040289_SNP [dm3] 3L_8047189_SNP [dm6]	T	C	5.432e^-4	0.963	INTRON nmo	TF binding site mE1_TFBS_cad
3L	17910673	3L_17910673_INS [dm3] 3L_17917573_INS [dm6]	C	AAGTA	5.433e^-4	0.963	INTERGENIC
2L	3341655	2L_3341655_SNP [dm3] 2L_3341655_SNP [dm6]	T	C	5.449e^-4	0.963	INTRON E23
2L	12826877	2L_12826877_SNP [dm3] 2L_12826877_SNP [dm6]	G	T	5.456e^-4	0.963	INTERGENIC
3R	17385547	3R_17385547_DEL [dm3] 3R_21559825_DEL [dm6]	TCATTTGAAAGTTTTATGGC...	T	5.461e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1581171	3L_1581171_SNP [dm3] 3L_1581171_SNP [dm6]	C	T	5.466e^-4	0.963	INTRON CG13917
3L	10553841	3L_10553841_SNP [dm3] 3L_10560741_SNP [dm6]	C	A	5.468e^-4	0.963	INTRON A2bp1
2R	9657938	2R_9657938_SNP [dm3] 2R_13770433_SNP [dm6]	A	C	5.470e^-4	0.963	INTRON Cpr50Ca
2R	9631766	2R_9631766_SNP [dm3] 2R_13744261_SNP [dm6]	G	T	5.470e^-4	0.963	INTRON fas
3R	15002689	3R_15002689_SNP [dm3] 3R_19176967_SNP [dm6]	A	C	5.471e^-4	0.963	UPSTREAM CG14282 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15011453	3R_15011453_SNP [dm3] 3R_19185731_SNP [dm6]	A	C	5.477e^-4	0.963	INTRON CG31475
2L	7495112	2L_7495112_INS [dm3] 2L_7495112_INS [dm6]	C	CCTAAACCTA	5.480e^-4	0.963	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18429747	2L_18429747_SNP [dm3] 2L_18429747_SNP [dm6]	T	C	5.483e^-4	0.963	INTERGENIC
2L	11037896	2L_11037896_SNP [dm3] 2L_11037896_SNP [dm6]	A	G	5.487e^-4	0.963	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4824431	2L_4824431_SNP [dm3] 2L_4824431_SNP [dm6]	A	T	5.488e^-4	0.963	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22438446	3R_22438446_SNP [dm3] 3R_26612724_SNP [dm6]	A	T	5.495e^-4	0.963	INTERGENIC
X	5395507	X_5395507_SNP [dm3] X_5501474_SNP [dm6]	C	G	5.495e^-4	0.963	UPSTREAM CG4151 & 1 other INTERGENIC
3L	13221378	3L_13221378_SNP [dm3] 3L_13228278_SNP [dm6]	C	G	5.498e^-4	0.963	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11932644	2R_11932644_SNP [dm3] 2R_16045139_SNP [dm6]	C	T	5.499e^-4	0.963	SYNONYMOUS_CODING SP2353

By genomic position
Variant impact
Gene name

mn_NegGeotaxis_MSB phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results