DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.409e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07678
In_3R_K	0.01908

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.7837	0.0915
In_3R_K	8.2719	0.016

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2421 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16581122	2L_16581122_SNP [dm3] 2L_16581122_SNP [dm6]	T	G	2.693e^-8	0.051	INTRON CG42389
3R	16167064	3R_16167064_SNP [dm3] 3R_20341342_SNP [dm6]	A	G	1.418e^-6	0.711	INTRON Ir92a	TF binding site mE1_TFBS_cad
X	12295572	X_12295572_SNP [dm3] X_12401539_SNP [dm6]	T	C	1.879e^-6	0.711	INTERGENIC
2L	3303502	2L_3303502_SNP [dm3] 2L_3303502_SNP [dm6]	C	T	2.175e^-6	0.711	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9655986	2R_9655986_SNP [dm3] 2R_13768481_SNP [dm6]	G	A	2.479e^-6	0.711	INTERGENIC
2L	19848803	2L_19848803_SNP [dm3] 2L_19848803_SNP [dm6]	G	A	3.042e^-6	0.711	INTRON sick
3R	20830577	3R_20830577_SNP [dm3] 3R_25004855_SNP [dm6]	A	T	3.460e^-6	0.711	INTRON tnc
3R	1946747	3R_1946747_SNP [dm3] 3R_6121025_SNP [dm6]	T	C	3.736e^-6	0.711	INTERGENIC
3R	10244242	3R_10244242_SNP [dm3] 3R_14418520_SNP [dm6]	C	T	4.509e^-6	0.711	UPSTREAM natalisin INTRON cv-c	TF binding site mE1_TFBS_chinmo
3L	2002034	3L_2002034_SNP [dm3] 3L_2002034_SNP [dm6]	A	G	4.595e^-6	0.711	INTERGENIC
3R	20223588	3R_20223588_SNP [dm3] 3R_24397866_SNP [dm6]	G	A	5.903e^-6	0.711	UTR_3_PRIME nAChRalpha1
3L	6610686	3L_6610686_SNP [dm3] 3L_6617586_SNP [dm6]	G	T	6.768e^-6	0.711	INTRON CG8398
2L	6014323	2L_6014323_SNP [dm3] 2L_6014323_SNP [dm6]	G	A	6.835e^-6	0.711	INTRON H2.0
3L	7812474	3L_7812474_SNP [dm3] 3L_7819374_SNP [dm6]	T	G	6.927e^-6	0.711	INTRON Pdp1
3L	7208272	3L_7208272_SNP [dm3] 3L_7215172_SNP [dm6]	A	T	8.718e^-6	0.711	INTERGENIC
2R	1298917	2R_1298917_DEL [dm3] 2R_5411412_DEL [dm6]	TGGCAATAACT...	T	8.979e^-6	0.711	INTERGENIC	transposable element FlyBase
2L	15771494	2L_15771494_SNP [dm3] 2L_15771494_SNP [dm6]	C	T	9.680e^-6	0.711	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	10593021	3L_10593021_SNP [dm3] 3L_10599921_SNP [dm6]	A	G	1.032e^-5	0.711	INTERGENIC
3R	19566780	3R_19566780_SNP [dm3] 3R_23741058_SNP [dm6]	C	T	1.148e^-5	0.711	INTRON Hmgcr
2L	5103996	2L_5103996_SNP [dm3] 2L_5103996_SNP [dm6]	T	C	1.166e^-5	0.711	INTRON Msp300
2L	7968714	2L_7968714_SNP [dm3] 2L_7968714_SNP [dm6]	A	T	1.234e^-5	0.711	INTRON Snoo
3R	8667358	3R_8667358_SNP [dm3] 3R_12841636_SNP [dm6]	G	A	1.247e^-5	0.711	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
3R	10040195	3R_10040195_SNP [dm3] 3R_14214473_SNP [dm6]	A	G	1.302e^-5	0.711	UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
3R	5655544	3R_5655544_INS [dm3] 3R_9829822_INS [dm6]	T	TTGCTTT	1.336e^-5	0.711	INTRON Teh1
2L	9182925	2L_9182925_SNP [dm3] 2L_9182925_SNP [dm6]	T	C	1.482e^-5	0.711	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8660055	2L_8660055_SNP [dm3] 2L_8660055_SNP [dm6]	A	G	1.501e^-5	0.711	INTRON Sema-1a
2L	20297257	2L_20297257_SNP [dm3] 2L_20297257_SNP [dm6]	G	C	1.518e^-5	0.711	EXON CR43414
2R	1231034	2R_1231034_SNP [dm3] 2R_5343529_SNP [dm6]	T	A	1.552e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA transposable element FlyBase
3L	9159906	3L_9159906_SNP [dm3] 3L_9166806_SNP [dm6]	G	T	1.600e^-5	0.711	INTRON Rdl
2R	8916669	2R_8916669_SNP [dm3] 2R_13029164_SNP [dm6]	C	T	1.649e^-5	0.711	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	11750312	2L_11750312_SNP [dm3] 2L_11750312_SNP [dm6]	A	T	1.682e^-5	0.711	INTERGENIC
2R	4294818	2R_4294818_SNP [dm3] 2R_8407313_SNP [dm6]	C	T	1.687e^-5	0.711	INTRON CG2121
2L	4454364	2L_4454364_SNP [dm3] 2L_4454364_SNP [dm6]	A	T	1.721e^-5	0.711	UTR_5_PRIME CG15440 UPSTREAM CG15434 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	14369191	3R_14369191_SNP [dm3] 3R_18543469_SNP [dm6]	G	T	1.731e^-5	0.711	INTRON fru
3L	9769580	3L_9769580_SNP [dm3] 3L_9776480_SNP [dm6]	C	A	1.741e^-5	0.711	INTRON CG8177
3R	21624591	3R_21624591_SNP [dm3] 3R_25798869_SNP [dm6]	A	T	1.801e^-5	0.711	INTERGENIC
2L	2023006	2L_2023006_SNP [dm3] 2L_2023006_SNP [dm6]	C	A	1.816e^-5	0.711	INTRON CG4238
3R	16167252	3R_16167252_SNP [dm3] 3R_20341530_SNP [dm6]	T	G	1.861e^-5	0.711	INTRON Ir92a
2L	1058162	2L_1058162_DEL [dm3] 2L_1058162_DEL [dm6]	TGATTGCAAGCCGAT...	T	1.880e^-5	0.711	INTRON S	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	21624581	3R_21624581_SNP [dm3] 3R_25798859_SNP [dm6]	G	A	1.920e^-5	0.711	INTERGENIC
2R	2450114	2R_2450114_SNP [dm3] 2R_6562609_SNP [dm6]	G	T	1.943e^-5	0.711	INTRON jing	TF binding site mE1_TFBS_cad
2L	4273735	2L_4273735_SNP [dm3] 2L_4273735_SNP [dm6]	T	A	1.994e^-5	0.711	INTERGENIC
2R	1236422	2R_1236422_SNP [dm3] 2R_5348917_SNP [dm6]	G	T	2.010e^-5	0.711	INTERGENIC	transposable element FlyBase
3R	10643738	3R_10643738_SNP [dm3] 3R_14818016_SNP [dm6]	G	A	2.086e^-5	0.711	NON_SYNONYMOUS_CODING btsz UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9804343	2L_9804343_SNP [dm3] 2L_9804343_SNP [dm6]	T	C	2.087e^-5	0.711	INTRON nAChRalpha6
2L	15771544	2L_15771544_SNP [dm3] 2L_15771544_SNP [dm6]	G	C	2.108e^-5	0.711	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	16381118	2L_16381118_SNP [dm3] 2L_16381118_SNP [dm6]	T	A	2.145e^-5	0.711	INTERGENIC
2L	14430274	2L_14430274_SNP [dm3] 2L_14430274_SNP [dm6]	T	G	2.197e^-5	0.711	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	16329299	2L_16329299_INS [dm3] 2L_16329299_INS [dm6]	T	TATTATAT	2.254e^-5	0.711	UPSTREAM CG4440 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13266197	3L_13266197_SNP [dm3] 3L_13273097_SNP [dm6]	C	A	2.261e^-5	0.711	INTRON caps
2R	14289920	2R_14289920_SNP [dm3] 2R_18402415_SNP [dm6]	A	T	2.262e^-5	0.711	UPSTREAM CR43688 & 1 other DOWNSTREAM GstE3 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8538278	2L_8538278_SNP [dm3] 2L_8538278_SNP [dm6]	C	T	2.325e^-5	0.711	DOWNSTREAM CG17834 INTRON CG17834
3R	9822569	3R_9822569_INS [dm3] 3R_13996847_INS [dm6]	T	TAT	2.343e^-5	0.711	INTRON rdx
2L	20341371	2L_20341371_SNP [dm3] 2L_20341371_SNP [dm6]	T	C	2.381e^-5	0.711	UPSTREAM spir INTRON spir
3R	10244212	3R_10244212_SNP [dm3] 3R_14418490_SNP [dm6]	A	C	2.413e^-5	0.711	UPSTREAM natalisin INTRON cv-c
2L	14851961	2L_14851961_INS [dm3] 2L_14851961_INS [dm6]	A	AATGC	2.429e^-5	0.711	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14296509	2R_14296509_SNP [dm3] 2R_18409004_SNP [dm6]	G	A	2.439e^-5	0.711	UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other INTERGENIC
2L	14852148	2L_14852148_SNP [dm3] 2L_14852148_SNP [dm6]	T	A	2.497e^-5	0.711	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14609346	3R_14609346_SNP [dm3] 3R_18783624_SNP [dm6]	G	A	2.507e^-5	0.711	INTRON CG7720
2L	8001981	2L_8001981_SNP [dm3] 2L_8001981_SNP [dm6]	T	A	2.578e^-5	0.711	INTRON Wwox
2L	14852137	2L_14852137_SNP [dm3] 2L_14852137_SNP [dm6]	A	C	2.610e^-5	0.711	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	14296491	2R_14296491_SNP [dm3] 2R_18408986_SNP [dm6]	T	A	2.673e^-5	0.711	UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other INTERGENIC
2R	18474864	2R_18474864_SNP [dm3] 2R_22587359_SNP [dm6]	G	T	2.686e^-5	0.711	INTRON dnr1
2R	1224969	2R_1224969_DEL [dm3] 2R_5337464_DEL [dm6]	CC	C	2.704e^-5	0.711	INTERGENIC	transposable element FlyBase
3R	26134383	3R_26134383_SNP [dm3] 3R_30308661_SNP [dm6]	A	T	2.733e^-5	0.711	INTRON hdc
2L	14852138	2L_14852138_SNP [dm3] 2L_14852138_SNP [dm6]	C	A	2.794e^-5	0.711	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11032678	3L_11032678_SNP [dm3] 3L_11039578_SNP [dm6]	C	T	2.811e^-5	0.711	INTRON CG43693
3R	13789143	3R_13789143_SNP [dm3] 3R_17963421_SNP [dm6]	G	A	2.847e^-5	0.711	INTRON cpo
3R	24823343	3R_24823343_INS [dm3] 3R_28997621_INS [dm6]	G	GGT	2.870e^-5	0.711	INTRON wat
3L	18214850	3L_18214850_SNP [dm3] 3L_18221750_SNP [dm6]	C	A	2.932e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20297240	2L_20297240_DEL [dm3] 2L_20297240_DEL [dm6]	CCCTGTGCC	A	2.994e^-5	0.711	EXON CR43414
3L	21268313	3L_21268313_SNP [dm3] 3L_21275213_SNP [dm6]	G	T	3.208e^-5	0.711	INTRON AcCoAS
3R	5096048	3R_5096048_DEL [dm3] 3R_9270326_DEL [dm6]	CC	C	3.224e^-5	0.711	DOWNSTREAM Vps16A INTERGENIC
3L	18891220	3L_18891220_SNP [dm3] 3L_18898120_SNP [dm6]	G	A	3.258e^-5	0.711	UPSTREAM RpL26 INTRON CG3902
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	3.299e^-5	0.711	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3L	10678860	3L_10678860_SNP [dm3] 3L_10685760_SNP [dm6]	A	G	3.365e^-5	0.711	SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4454403	2L_4454403_SNP [dm3] 2L_4454403_SNP [dm6]	C	A	3.372e^-5	0.711	UTR_5_PRIME CG15440 UPSTREAM CG15434 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	13349208	2L_13349208_SNP [dm3] 2L_13349208_SNP [dm6]	C	T	3.456e^-5	0.711	DOWNSTREAM CG9395 & 1 other INTERGENIC
X	18736621	X_18736621_SNP [dm3] X_18842588_SNP [dm6]	T	A	3.551e^-5	0.711	UTR_3_PRIME Pvf1
3L	11445857	3L_11445857_SNP [dm3] 3L_11452757_SNP [dm6]	G	A	3.600e^-5	0.711	INTERGENIC
2L	15771536	2L_15771536_SNP [dm3] 2L_15771536_SNP [dm6]	T	A	3.617e^-5	0.711	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	8702557	2R_8702557_SNP [dm3] 2R_12815052_SNP [dm6]	G	A	3.636e^-5	0.711	INTERGENIC
3L	18214835	3L_18214835_DEL [dm3] 3L_18221735_DEL [dm6]	AAGATACAGA	A	3.667e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11594130	2R_11594130_SNP [dm3] 2R_15706625_SNP [dm6]	G	T	3.668e^-5	0.711	INTERGENIC
2R	2473529	2R_2473529_SNP [dm3] 2R_6586024_SNP [dm6]	A	G	3.725e^-5	0.711	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	20971364	3R_20971364_SNP [dm3] 3R_25145642_SNP [dm6]	T	C	3.869e^-5	0.711	INTERGENIC
2L	15100020	2L_15100020_SNP [dm3] 2L_15100020_SNP [dm6]	C	T	4.020e^-5	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5207434	3R_5207434_SNP [dm3] 3R_9381712_SNP [dm6]	A	G	4.066e^-5	0.711	INTRON FER
2L	13935214	2L_13935214_SNP [dm3] 2L_13935214_SNP [dm6]	C	G	4.166e^-5	0.711	UPSTREAM CG16885 INTRON Ance-3
3L	18214890	3L_18214890_SNP [dm3] 3L_18221790_SNP [dm6]	A	G	4.178e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	10244193	3R_10244193_SNP [dm3] 3R_14418471_SNP [dm6]	G	A	4.235e^-5	0.711	UPSTREAM natalisin INTRON cv-c
3L	21082051	3L_21082051_SNP [dm3] 3L_21088951_SNP [dm6]	T	G	4.237e^-5	0.711	UTR_5_PRIME CG33285 INTRON ko	regulatory region REDfly_CRMs
2L	14922814	2L_14922814_SNP [dm3] 2L_14922814_SNP [dm6]	G	A	4.417e^-5	0.711	INTRON CG42313
2R	609183	2R_609183_SNP [dm3] 2R_4721678_SNP [dm6]	C	T	4.469e^-5	0.711	INTRON Nipped-B	TF binding site mE1_TFBS_inv transposable element FlyBase
2R	6184017	2R_6184017_SNP [dm3] 2R_10296512_SNP [dm6]	G	C	4.490e^-5	0.711	NON_SYNONYMOUS_CODING CAP INTRON CAP
2R	1237424	2R_1237424_SNP [dm3] 2R_5349919_SNP [dm6]	A	T	4.506e^-5	0.711	UPSTREAM CG10395 INTERGENIC	transposable element FlyBase
2R	14296515	2R_14296515_SNP [dm3] 2R_18409010_SNP [dm6]	A	C	4.547e^-5	0.711	UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other INTERGENIC
2L	21868256	2L_21868256_SNP [dm3] 2L_21868256_SNP [dm6]	C	T	4.647e^-5	0.711	UPSTREAM CR44919 DOWNSTREAM CR44917 EXON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19300699	3R_19300699_SNP [dm3] 3R_23474977_SNP [dm6]	T	A	4.758e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	6575514	3L_6575514_DEL [dm3] 3L_6582414_DEL [dm6]	AA	A	4.845e^-5	0.711	INTRON CG18769 & 1 other
2L	16118118	2L_16118118_SNP [dm3] 2L_16118118_SNP [dm6]	C	T	4.862e^-5	0.711	INTERGENIC
3L	13349343	3L_13349343_SNP [dm3] 3L_13356243_SNP [dm6]	T	A	4.870e^-5	0.711	UPSTREAM Nplp2 INTERGENIC
2L	17013155	2L_17013155_SNP [dm3] 2L_17013155_SNP [dm6]	G	A	4.922e^-5	0.711	UPSTREAM CG6304 INTRON CG6304
2R	9363664	2R_9363664_SNP [dm3] 2R_13476159_SNP [dm6]	A	G	4.973e^-5	0.711	INTRON arr
2R	1232475	2R_1232475_SNP [dm3] 2R_5344970_SNP [dm6]	T	C	5.115e^-5	0.711	INTERGENIC
3R	15399328	3R_15399328_SNP [dm3] 3R_19573606_SNP [dm6]	C	A	5.144e^-5	0.711	INTRON Dys
3R	22856767	3R_22856767_SNP [dm3] 3R_27031045_SNP [dm6]	C	A	5.166e^-5	0.711	INTRON RYa-R
2L	19930639	2L_19930639_SNP [dm3] 2L_19930639_SNP [dm6]	G	A	5.211e^-5	0.711	INTRON sick
2R	9166447	2R_9166447_SNP [dm3] 2R_13278942_SNP [dm6]	A	G	5.236e^-5	0.711	INTRON Dh31-R
3L	18846041	3L_18846041_SNP [dm3] 3L_18852941_SNP [dm6]	C	T	5.276e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13935220	2L_13935220_SNP [dm3] 2L_13935220_SNP [dm6]	A	C	5.299e^-5	0.711	UPSTREAM CG16885 INTRON Ance-3
3R	21802091	3R_21802091_SNP [dm3] 3R_25976369_SNP [dm6]	C	T	5.317e^-5	0.711	INTRON CG42261
3R	16167096	3R_16167096_SNP [dm3] 3R_20341374_SNP [dm6]	A	T	5.439e^-5	0.711	INTRON Ir92a
X	17125766	X_17125766_SNP [dm3] X_17231733_SNP [dm6]	G	A	5.441e^-5	0.711	UPSTREAM CG10597 INTERGENIC
2L	16581680	2L_16581680_SNP [dm3] 2L_16581680_SNP [dm6]	T	A	5.466e^-5	0.711	INTRON CG42389
3R	22405356	3R_22405356_SNP [dm3] 3R_26579634_SNP [dm6]	T	C	5.472e^-5	0.711	INTRON scrib	TF binding site mE1_TFBS_cad
2L	7224272	2L_7224272_SNP [dm3] 2L_7224272_SNP [dm6]	A	G	5.492e^-5	0.711	UTR_3_PRIME Ndae1 INTRON Ndae1
3R	10047421	3R_10047421_SNP [dm3] 3R_14221699_SNP [dm6]	T	A	5.575e^-5	0.711	UPSTREAM CG33109 DOWNSTREAM Sp212 INTERGENIC
3R	15247753	3R_15247753_SNP [dm3] 3R_19422031_SNP [dm6]	C	G	5.654e^-5	0.711	INTRON CG31221
2L	5850190	2L_5850190_SNP [dm3] 2L_5850190_SNP [dm6]	T	C	5.773e^-5	0.711	SYNONYMOUS_CODING TrissinR
3R	14191380	3R_14191380_SNP [dm3] 3R_18365658_SNP [dm6]	A	C	5.801e^-5	0.711	UPSTREAM Nup43 INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	23818281	3R_23818281_SNP [dm3] 3R_27992559_SNP [dm6]	C	A	5.835e^-5	0.711	INTERGENIC
3L	15918281	3L_15918281_SNP [dm3] 3L_15925181_SNP [dm6]	A	C	5.869e^-5	0.711	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23927631	3R_23927631_SNP [dm3] 3R_28101909_SNP [dm6]	G	A	5.890e^-5	0.711	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8576755	3L_8576755_SNP [dm3] 3L_8583655_SNP [dm6]	T	C	5.895e^-5	0.711	UTR_5_PRIME CG43078 INTRON CG43078
2L	16118088	2L_16118088_SNP [dm3] 2L_16118088_SNP [dm6]	T	A	5.952e^-5	0.711	INTERGENIC
3R	14609400	3R_14609400_SNP [dm3] 3R_18783678_SNP [dm6]	T	G	5.974e^-5	0.711	INTRON CG7720
2L	17414672	2L_17414672_SNP [dm3] 2L_17414672_SNP [dm6]	T	C	6.020e^-5	0.711	DOWNSTREAM Dif INTRON Dif
2L	7198914	2L_7198914_SNP [dm3] 2L_7198914_SNP [dm6]	C	T	6.049e^-5	0.711	INTRON CG4502
3L	16508520	3L_16508520_SNP [dm3] 3L_16515420_SNP [dm6]	T	C	6.060e^-5	0.711	INTRON CG43373
3R	19168594	3R_19168594_SNP [dm3] 3R_23342872_SNP [dm6]	T	C	6.321e^-5	0.711	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15771568	2L_15771568_SNP [dm3] 2L_15771568_SNP [dm6]	T	G	6.337e^-5	0.711	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
3R	18971433	3R_18971433_SNP [dm3] 3R_23145711_SNP [dm6]	T	C	6.464e^-5	0.711	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
X	17125781	X_17125781_SNP [dm3] X_17231748_SNP [dm6]	A	T	6.522e^-5	0.711	UPSTREAM CG10597 INTERGENIC
2L	21868153	2L_21868153_SNP [dm3] 2L_21868153_SNP [dm6]	G	T	6.530e^-5	0.711	UPSTREAM CR44919 DOWNSTREAM CR44917 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5097340	2R_5097340_DEL [dm3] 2R_9209835_DEL [dm6]	AAGATAAAG	A	6.542e^-5	0.711	DOWNSTREAM VhaAC45 INTERGENIC
2L	8002017	2L_8002017_SNP [dm3] 2L_8002017_SNP [dm6]	C	T	6.569e^-5	0.711	INTRON Wwox
2L	4487435	2L_4487435_SNP [dm3] 2L_4487435_SNP [dm6]	C	T	6.596e^-5	0.711	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9773121	2L_9773121_SNP [dm3] 2L_9773121_SNP [dm6]	C	T	6.646e^-5	0.711	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2L	4273700	2L_4273700_SNP [dm3] 2L_4273700_SNP [dm6]	T	A	6.649e^-5	0.711	INTERGENIC
3L	13221139	3L_13221139_SNP [dm3] 3L_13228039_SNP [dm6]	C	T	6.651e^-5	0.711	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	17134692	X_17134692_SNP [dm3] X_17240659_SNP [dm6]	C	G	6.686e^-5	0.711	UTR_3_PRIME CG8915 DOWNSTREAM CG8915 INTRON f
3R	9332309	3R_9332309_SNP [dm3] 3R_13506587_SNP [dm6]	A	G	6.708e^-5	0.711	INTERGENIC
2R	14806812	2R_14806812_SNP [dm3] 2R_18919307_SNP [dm6]	G	A	6.709e^-5	0.711	INTRON sano
2L	4273703	2L_4273703_SNP [dm3] 2L_4273703_SNP [dm6]	G	C	6.711e^-5	0.711	INTERGENIC
2L	2278376	2L_2278376_SNP [dm3] 2L_2278376_SNP [dm6]	C	A	6.783e^-5	0.711	INTRON CR43753 EXON CR43753
2L	18814636	2L_18814636_SNP [dm3] 2L_18814636_SNP [dm6]	C	T	6.791e^-5	0.711	DOWNSTREAM CG17325 & 1 other INTERGENIC
X	8094070	X_8094070_SNP [dm3] X_8200037_SNP [dm6]	T	C	6.798e^-5	0.711	INTRON sdt
3R	13188440	3R_13188440_SNP [dm3] 3R_17362718_SNP [dm6]	G	A	6.869e^-5	0.711	INTRON beat-IIa
2L	15413229	2L_15413229_SNP [dm3] 2L_15413229_SNP [dm6]	C	A	6.885e^-5	0.711	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14852126	2L_14852126_SNP [dm3] 2L_14852126_SNP [dm6]	G	T	6.902e^-5	0.711	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	6.912e^-5	0.711	INTERGENIC
3L	8082544	3L_8082544_SNP [dm3] 3L_8089444_SNP [dm6]	A	G	6.924e^-5	0.711	INTRON Ect4 & 1 other	TF binding site mE1_TFBS_cad
3R	6753796	3R_6753796_SNP [dm3] 3R_10928074_SNP [dm6]	A	C	6.956e^-5	0.711	INTERGENIC
2L	10601952	2L_10601952_SNP [dm3] 2L_10601952_SNP [dm6]	C	T	6.989e^-5	0.711	INTRON Trim9
2L	13935105	2L_13935105_SNP [dm3] 2L_13935105_SNP [dm6]	G	T	7.003e^-5	0.711	UPSTREAM CG16885 INTRON Ance-3
2L	4487433	2L_4487433_SNP [dm3] 2L_4487433_SNP [dm6]	T	C	7.020e^-5	0.711	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11105996	3R_11105996_DEL [dm3] 3R_15280274_DEL [dm6]	TATGC	T	7.031e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18507776	2L_18507776_DEL [dm3] 2L_18507776_DEL [dm6]	TTCAATTAAATCTCTTTAAA...	T	7.052e^-5	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11445859	3L_11445859_SNP [dm3] 3L_11452759_SNP [dm6]	A	G	7.083e^-5	0.711	INTERGENIC
3R	21624469	3R_21624469_SNP [dm3] 3R_25798747_SNP [dm6]	T	C	7.258e^-5	0.711	UPSTREAM CR43847 INTERGENIC
X	6513855	X_6513855_SNP [dm3] X_6619822_SNP [dm6]	G	A	7.333e^-5	0.711	INTRON pigs
3R	19010024	3R_19010024_SNP [dm3] 3R_23184302_SNP [dm6]	T	C	7.359e^-5	0.711	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3071499	X_3071499_SNP [dm3] X_3177466_SNP [dm6]	C	T	7.377e^-5	0.711	INTRON dnc
3R	10226008	3R_10226008_SNP [dm3] 3R_14400286_SNP [dm6]	A	G	7.385e^-5	0.711	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	7.463e^-5	0.711	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2L	5458882	2L_5458882_SNP [dm3] 2L_5458882_SNP [dm6]	C	T	7.481e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	19185894	3R_19185894_SNP [dm3] 3R_23360172_SNP [dm6]	C	A	7.525e^-5	0.711	UTR_3_PRIME RpS3 DOWNSTREAM RpS3	TF binding site BDTNP1_TFBS_twi
2L	4274176	2L_4274176_INS [dm3] 2L_4274176_INS [dm6]	T	TT	7.622e^-5	0.711	INTERGENIC
2L	4454065	2L_4454065_SNP [dm3] 2L_4454065_SNP [dm6]	A	G	7.630e^-5	0.711	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16118183	2L_16118183_SNP [dm3] 2L_16118183_SNP [dm6]	G	T	7.668e^-5	0.711	INTERGENIC
X	6721805	X_6721805_SNP [dm3] X_6827772_SNP [dm6]	A	T	7.754e^-5	0.711	INTRON nonC	TF binding site mE1_TFBS_chinmo
2R	1225677	2R_1225677_SNP [dm3] 2R_5338172_SNP [dm6]	A	T	7.780e^-5	0.711	INTERGENIC	transposable element FlyBase
2R	14993328	2R_14993328_SNP [dm3] 2R_19105823_SNP [dm6]	A	T	7.800e^-5	0.711	INTRON 5-HT1A
2R	16060138	2R_16060138_SNP [dm3] 2R_20172633_SNP [dm6]	G	T	7.966e^-5	0.711	INTERGENIC
2L	1851798	2L_1851798_SNP [dm3] 2L_1851798_SNP [dm6]	C	G	7.992e^-5	0.711	SYNONYMOUS_CODING wry
2R	8824136	2R_8824136_SNP [dm3] 2R_12936631_SNP [dm6]	T	G	8.048e^-5	0.711	UPSTREAM Sans & 1 other DOWNSTREAM CG30487 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	1237406	2R_1237406_SNP [dm3] 2R_5349901_SNP [dm6]	A	G	8.121e^-5	0.711	UPSTREAM CG10395 INTERGENIC	transposable element FlyBase
2L	4082607	2L_4082607_SNP [dm3] 2L_4082607_SNP [dm6]	A	T	8.172e^-5	0.711	INTRON ed
2R	8609264	2R_8609264_INS [dm3] 2R_12721759_INS [dm6]	T	TATGAA	8.192e^-5	0.711	INTRON CG42663
2R	8609267	2R_8609267_SNP [dm3] 2R_12721762_SNP [dm6]	G	T	8.192e^-5	0.711	INTRON CG42663
2R	8609268	2R_8609268_DEL [dm3] 2R_12721763_DEL [dm6]	GAAAAC	G	8.192e^-5	0.711	INTRON CG42663
3L	7119339	3L_7119339_SNP [dm3] 3L_7126239_SNP [dm6]	T	G	8.219e^-5	0.711	UPSTREAM msl-3 INTRON BBS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9719653	3L_9719653_SNP [dm3] 3L_9726553_SNP [dm6]	C	T	8.234e^-5	0.711	SYNONYMOUS_CODING defl UPSTREAM Naa60	TF binding site mE1_TFBS_chinmo
3R	23318350	3R_23318350_INS [dm3] 3R_27492628_INS [dm6]	A	AATGCGTTGCAAAA...	8.239e^-5	0.711	INTERGENIC
2R	1227091	2R_1227091_SNP [dm3] 2R_5339586_SNP [dm6]	A	G	8.302e^-5	0.711	DOWNSTREAM CG10465 INTERGENIC	TF binding site mE1_TFBS_sbb
3L	8029480	3L_8029480_SNP [dm3] 3L_8036380_SNP [dm6]	T	G	8.343e^-5	0.711	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3R	16064160	3R_16064160_SNP [dm3] 3R_20238438_SNP [dm6]	T	C	8.345e^-5	0.711	INTRON Nlg4
2L	14846374	2L_14846374_SNP [dm3] 2L_14846374_SNP [dm6]	C	T	8.474e^-5	0.711	SYNONYMOUS_CODING CG15279
2L	16118165	2L_16118165_DEL [dm3] 2L_16118165_DEL [dm6]	AG	A	8.478e^-5	0.711	INTERGENIC
2R	6144486	2R_6144486_DEL [dm3] 2R_10256981_DEL [dm6]	ATTTTTA	A	8.508e^-5	0.711	INTRON CG12911
3R	13970131	3R_13970131_SNP [dm3] 3R_18144409_SNP [dm6]	T	A	8.508e^-5	0.711	INTERGENIC
3R	16167191	3R_16167191_SNP [dm3] 3R_20341469_SNP [dm6]	T	A	8.538e^-5	0.711	INTRON Ir92a
X	6508083	X_6508083_SNP [dm3] X_6614050_SNP [dm6]	T	C	8.586e^-5	0.711	INTRON pigs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1222224	2R_1222224_SNP [dm3] 2R_5334719_SNP [dm6]	T	A	8.597e^-5	0.711	INTERGENIC	transposable element FlyBase
2R	1232479	2R_1232479_SNP [dm3] 2R_5344974_SNP [dm6]	C	A	8.597e^-5	0.711	INTERGENIC
3R	19185821	3R_19185821_SNP [dm3] 3R_23360099_SNP [dm6]	C	G	8.714e^-5	0.711	UTR_3_PRIME RpS3 DOWNSTREAM RpS3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14191385	3R_14191385_SNP [dm3] 3R_18365663_SNP [dm6]	G	A	8.731e^-5	0.711	UPSTREAM Nup43 INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	16118173	2L_16118173_SNP [dm3] 2L_16118173_SNP [dm6]	A	G	8.734e^-5	0.711	INTERGENIC
2R	14191576	2R_14191576_SNP [dm3] 2R_18304071_SNP [dm6]	C	A	8.740e^-5	0.711	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9858924	3R_9858924_SNP [dm3] 3R_14033202_SNP [dm6]	C	T	8.765e^-5	0.711	INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	16581664	2L_16581664_SNP [dm3] 2L_16581664_SNP [dm6]	G	T	8.789e^-5	0.711	INTRON CG42389
2R	1221872	2R_1221872_SNP [dm3] 2R_5334367_SNP [dm6]	G	A	8.874e^-5	0.711	INTERGENIC	transposable element FlyBase
X	6678099	X_6678099_SNP [dm3] X_6784066_SNP [dm6]	A	G	8.893e^-5	0.711	NON_SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25431144	3R_25431144_INS [dm3] 3R_29605422_INS [dm6]	G	GTG	8.928e^-5	0.711	INTRON alph
3L	3918643	3L_3918643_SNP [dm3] 3L_3918643_SNP [dm6]	A	G	8.959e^-5	0.711	INTRON Eip63F-1
2L	13801503	2L_13801503_SNP [dm3] 2L_13801503_SNP [dm6]	G	A	9.001e^-5	0.711	INTERGENIC
2R	4268525	2R_4268525_SNP [dm3] 2R_8381020_SNP [dm6]	C	G	9.003e^-5	0.711	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18321426	2R_18321426_SNP [dm3] 2R_22433921_SNP [dm6]	A	T	9.005e^-5	0.711	INTERGENIC
2L	13349221	2L_13349221_SNP [dm3] 2L_13349221_SNP [dm6]	G	A	9.068e^-5	0.711	DOWNSTREAM CG9395 & 1 other INTERGENIC
3L	15467368	3L_15467368_SNP [dm3] 3L_15474268_SNP [dm6]	A	G	9.079e^-5	0.711	UPSTREAM CG7804 INTERGENIC
2L	17400969	2L_17400969_SNP [dm3] 2L_17400969_SNP [dm6]	G	A	9.109e^-5	0.711	SYNONYMOUS_CODING CLIP-190	TF binding site mE1_TFBS_HSA
3R	14191357	3R_14191357_SNP [dm3] 3R_18365635_SNP [dm6]	G	A	9.126e^-5	0.711	INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	15002369	3R_15002369_DEL [dm3] 3R_19176647_DEL [dm6]	TT	T	9.132e^-5	0.711	UPSTREAM CG14282 INTERGENIC
X	6513837	X_6513837_SNP [dm3] X_6619804_SNP [dm6]	G	C	9.204e^-5	0.711	INTRON pigs
3R	14191340	3R_14191340_SNP [dm3] 3R_18365618_SNP [dm6]	A	C	9.205e^-5	0.711	SPLICE_SITE_REGION WRNexo INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	3007614	2R_3007614_SNP [dm3] 2R_7120109_SNP [dm6]	T	A	9.218e^-5	0.711	INTRON esn
2R	14527463	2R_14527463_SNP [dm3] 2R_18639958_SNP [dm6]	T	G	9.219e^-5	0.711	UPSTREAM CheA56a & 2 others DOWNSTREAM tRNA:CR30227 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	8000815	2L_8000815_SNP [dm3] 2L_8000815_SNP [dm6]	C	A	9.233e^-5	0.711	INTRON Wwox
X	17133321	X_17133321_SNP [dm3] X_17239288_SNP [dm6]	T	C	9.261e^-5	0.711	INTRON f
3R	14191436	3R_14191436_SNP [dm3] 3R_18365714_SNP [dm6]	A	G	9.334e^-5	0.711	SYNONYMOUS_CODING WRNexo UPSTREAM Nup43	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
3L	9715418	3L_9715418_SNP [dm3] 3L_9722318_SNP [dm6]	C	A	9.342e^-5	0.711	SYNONYMOUS_CODING nbs
3R	19626781	3R_19626781_SNP [dm3] 3R_23801059_SNP [dm6]	T	G	9.376e^-5	0.711	UTR_3_PRIME mbc DOWNSTREAM CG33111
2L	9773091	2L_9773091_SNP [dm3] 2L_9773091_SNP [dm6]	G	A	9.390e^-5	0.711	UPSTREAM ppk16 DOWNSTREAM ppk11 INTERGENIC
3R	22443153	3R_22443153_SNP [dm3] 3R_26617431_SNP [dm6]	C	G	9.391e^-5	0.711	INTERGENIC
3L	18338828	3L_18338828_SNP [dm3] 3L_18345728_SNP [dm6]	G	T	9.436e^-5	0.711	INTERGENIC	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2R	4083170	2R_4083170_INS [dm3] 2R_8195665_INS [dm6]	G	GCA	9.478e^-5	0.711	INTRON LRP1
2L	13736369	2L_13736369_SNP [dm3] 2L_13736369_SNP [dm6]	G	C	9.543e^-5	0.711	SYNONYMOUS_CODING CG31813	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16798584	2L_16798584_SNP [dm3] 2L_16798584_SNP [dm6]	C	G	9.558e^-5	0.711	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
3L	18210648	3L_18210648_SNP [dm3] 3L_18217548_SNP [dm6]	C	A	9.662e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8071346	3R_8071346_SNP [dm3] 3R_12245624_SNP [dm6]	C	T	9.700e^-5	0.711	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	18891161	3L_18891161_SNP [dm3] 3L_18898061_SNP [dm6]	A	G	9.740e^-5	0.711	UPSTREAM RpL26 INTRON CG3902
2R	14290236	2R_14290236_SNP [dm3] 2R_18402731_SNP [dm6]	G	A	9.763e^-5	0.711	UPSTREAM GstE4 DOWNSTREAM CR43687 EXON CR43688	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15918353	3L_15918353_DEL [dm3] 3L_15925253_DEL [dm6]	AATA	A	9.845e^-5	0.711	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16731335	3L_16731335_SNP [dm3] 3L_16738235_SNP [dm6]	C	T	9.900e^-5	0.711	INTRON CG9701
3L	13266072	3L_13266072_SNP [dm3] 3L_13272972_SNP [dm6]	G	C	9.918e^-5	0.711	INTRON caps
3R	23112003	3R_23112003_SNP [dm3] 3R_27286281_SNP [dm6]	A	G	9.932e^-5	0.711	NON_SYNONYMOUS_CODING CG3368
2L	8264342	2L_8264342_SNP [dm3] 2L_8264342_SNP [dm6]	G	C	9.935e^-5	0.711	INTRON Btk29A
2R	14296374	2R_14296374_SNP [dm3] 2R_18408869_SNP [dm6]	G	T	9.968e^-5	0.711	UTR_3_PRIME GstE8 UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other
2R	14191561	2R_14191561_SNP [dm3] 2R_18304056_SNP [dm6]	T	C	9.974e^-5	0.711	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	2579493	2R_2579493_SNP [dm3] 2R_6691988_SNP [dm6]	T	G	9.986e^-5	0.711	NON_SYNONYMOUS_CODING CG9422
2L	5104010	2L_5104010_SNP [dm3] 2L_5104010_SNP [dm6]	C	T	9.986e^-5	0.711	INTRON Msp300	insulator Insulator_Class_II.mE01
2R	17103677	2R_17103677_SNP [dm3] 2R_21216172_SNP [dm6]	C	T	9.994e^-5	0.711	SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad
2R	18335199	2R_18335199_SNP [dm3] 2R_22447694_SNP [dm6]	C	T	9.996e^-5	0.711	INTERGENIC
X	14441396	X_14441396_SNP [dm3] X_14547363_SNP [dm6]	G	A	1.000e^-4	0.711	INTERGENIC
2R	19217322	2R_19217322_SNP [dm3] 2R_23329799_SNP [dm6]	T	C	1.003e^-4	0.711	NON_SYNONYMOUS_CODING CG30413	TF binding site BDTNP1_TFBS_dl
2R	1934867	2R_1934867_SNP [dm3] 2R_6047362_SNP [dm6]	C	A	1.003e^-4	0.711	NON_SYNONYMOUS_CODING CG34211 EXON CR44130
2L	3303340	2L_3303340_DEL [dm3] 2L_3303340_DEL [dm6]	TTTG	T	1.007e^-4	0.711	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20424484	3R_20424484_SNP [dm3] 3R_24598762_SNP [dm6]	A	T	1.013e^-4	0.711	INTRON mld
2L	8273778	2L_8273778_SNP [dm3] 2L_8273778_SNP [dm6]	A	G	1.015e^-4	0.711	UTR_5_PRIME Btk29A INTRON Btk29A
3R	19185884	3R_19185884_SNP [dm3] 3R_23360162_SNP [dm6]	G	A	1.019e^-4	0.711	UTR_3_PRIME RpS3 DOWNSTREAM RpS3	TF binding site BDTNP1_TFBS_twi
3R	23549464	3R_23549464_SNP [dm3] 3R_27723742_SNP [dm6]	A	T	1.024e^-4	0.711	INTERGENIC
2L	19069180	2L_19069180_SNP [dm3] 2L_19069180_SNP [dm6]	T	C	1.025e^-4	0.711	UTR_5_PRIME CG10702 INTRON CG17343
3R	14369186	3R_14369186_SNP [dm3] 3R_18543464_SNP [dm6]	C	T	1.027e^-4	0.711	INTRON fru
3R	19566514	3R_19566514_SNP [dm3] 3R_23740792_SNP [dm6]	C	G	1.035e^-4	0.711	INTRON Hmgcr
3R	22306073	3R_22306073_INS [dm3] 3R_26480351_INS [dm6]	G	GG	1.042e^-4	0.711	INTRON plum
2L	13935207	2L_13935207_SNP [dm3] 2L_13935207_SNP [dm6]	T	G	1.045e^-4	0.711	UPSTREAM CG16885 INTRON Ance-3
2L	2288416	2L_2288416_SNP [dm3] 2L_2288416_SNP [dm6]	C	T	1.048e^-4	0.711	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3R	15002185	3R_15002185_SNP [dm3] 3R_19176463_SNP [dm6]	A	C	1.050e^-4	0.711	UPSTREAM CG14282 INTERGENIC
3R	14373309	3R_14373309_SNP [dm3] 3R_18547587_SNP [dm6]	C	T	1.053e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1232478	2R_1232478_SNP [dm3] 2R_5344973_SNP [dm6]	T	C	1.079e^-4	0.711	INTERGENIC
X	17125761	X_17125761_SNP [dm3] X_17231728_SNP [dm6]	T	A	1.080e^-4	0.711	UPSTREAM CG10597 INTERGENIC
3R	22271628	3R_22271628_SNP [dm3] 3R_26445906_SNP [dm6]	G	A	1.082e^-4	0.711	INTRON tx
3R	23873613	3R_23873613_SNP [dm3] 3R_28047891_SNP [dm6]	C	A	1.093e^-4	0.711	INTRON CG34362
2R	17689260	2R_17689260_SNP [dm3] 2R_21801755_SNP [dm6]	A	T	1.093e^-4	0.711	UPSTREAM CG4386 INTERGENIC
2L	19947637	2L_19947637_SNP [dm3] 2L_19947637_SNP [dm6]	A	G	1.094e^-4	0.711	INTRON sick
2L	19947657	2L_19947657_SNP [dm3] 2L_19947657_SNP [dm6]	T	A	1.096e^-4	0.711	INTRON sick
2L	16581659	2L_16581659_SNP [dm3] 2L_16581659_SNP [dm6]	C	T	1.105e^-4	0.711	INTRON CG42389
2R	9712095	2R_9712095_SNP [dm3] 2R_13824590_SNP [dm6]	C	T	1.109e^-4	0.711	UPSTREAM CG13339 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	14441417	X_14441417_SNP [dm3] X_14547384_SNP [dm6]	A	C	1.109e^-4	0.711	INTERGENIC
2R	2107731	2R_2107731_SNP [dm3] 2R_6220226_SNP [dm6]	A	T	1.119e^-4	0.711	UPSTREAM bin3 INTRON bin3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26610537	3R_26610537_SNP [dm3] 3R_30784815_SNP [dm6]	T	G	1.119e^-4	0.711	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8029486	3L_8029486_SNP [dm3] 3L_8036386_SNP [dm6]	G	T	1.128e^-4	0.711	INTRON nmo	TF binding site BDTNP1_TFBS_twi
X	2365030	X_2365030_INS [dm3] X_2470997_INS [dm6]	T	TAGTTTT	1.129e^-4	0.711	UTR_3_PRIME trol UPSTREAM boi	TF binding site mE1_TFBS_Trl
3L	8880332	3L_8880332_SNP [dm3] 3L_8887232_SNP [dm6]	T	C	1.139e^-4	0.711	SYNONYMOUS_CODING dally DOWNSTREAM CG43169
2L	6916568	2L_6916568_SNP [dm3] 2L_6916568_SNP [dm6]	A	G	1.141e^-4	0.711	UPSTREAM CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
2R	18498784	2R_18498784_SNP [dm3] 2R_22611279_SNP [dm6]	G	A	1.145e^-4	0.711	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	3144327	2R_3144327_DEL [dm3] 2R_7256822_DEL [dm6]	ATTTA	A	1.148e^-4	0.711	DOWNSTREAM CR45280 INTERGENIC
2L	13349045	2L_13349045_SNP [dm3] 2L_13349045_SNP [dm6]	G	T	1.151e^-4	0.711	DOWNSTREAM CG9395 & 1 other INTERGENIC
3R	13313442	3R_13313442_DEL [dm3] 3R_17487720_DEL [dm6]	AGTGCTTGCTT...	A	1.154e^-4	0.711	INTRON Dscam3
2R	1930029	2R_1930029_INS [dm3] 2R_6042524_INS [dm6]	A	AA	1.160e^-4	0.711	UPSTREAM Tbce INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19936068	2L_19936068_SNP [dm3] 2L_19936068_SNP [dm6]	G	A	1.165e^-4	0.711	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23024695	3R_23024695_SNP [dm3] 3R_27198973_SNP [dm6]	A	C	1.166e^-4	0.711	INTERGENIC	regulatory region REDfly_CRMs
3L	9719692	3L_9719692_SNP [dm3] 3L_9726592_SNP [dm6]	G	A	1.167e^-4	0.711	SYNONYMOUS_CODING defl UPSTREAM Naa60	TF binding site mE1_TFBS_HSA
3L	13283361	3L_13283361_SNP [dm3] 3L_13290261_SNP [dm6]	G	A	1.169e^-4	0.711	DOWNSTREAM CR43912 INTERGENIC
3L	9931695	3L_9931695_SNP [dm3] 3L_9938595_SNP [dm6]	T	C	1.171e^-4	0.711	INTRON CG34356
3R	13102735	3R_13102735_DEL [dm3] 3R_17277013_DEL [dm6]	ATTT	A	1.180e^-4	0.711	INTERGENIC
3L	9320521	3L_9320521_SNP [dm3] 3L_9327421_SNP [dm6]	T	C	1.190e^-4	0.711	INTERGENIC
2L	12616492	2L_12616492_SNP [dm3] 2L_12616492_SNP [dm6]	C	A	1.194e^-4	0.711	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	3071518	X_3071518_SNP [dm3] X_3177485_SNP [dm6]	C	T	1.204e^-4	0.711	INTRON dnc
2L	19944501	2L_19944501_INS [dm3] 2L_19944501_INS [dm6]	T	TT	1.205e^-4	0.711	INTRON sick	TF binding site mE1_TFBS_cad
3R	17154281	3R_17154281_SNP [dm3] 3R_21328559_SNP [dm6]	G	A	1.212e^-4	0.711	INTRON CG16791
3R	20223589	3R_20223589_SNP [dm3] 3R_24397867_SNP [dm6]	A	T	1.212e^-4	0.711	UTR_3_PRIME nAChRalpha1
X	18736654	X_18736654_SNP [dm3] X_18842621_SNP [dm6]	G	A	1.215e^-4	0.711	UTR_3_PRIME Pvf1
3L	10595740	3L_10595740_SNP [dm3] 3L_10602640_SNP [dm6]	T	G	1.217e^-4	0.711	INTERGENIC
3R	26086129	3R_26086129_SNP [dm3] 3R_30260407_SNP [dm6]	A	C	1.222e^-4	0.711	INTERGENIC
X	8986871	X_8986871_SNP [dm3] X_9092838_SNP [dm6]	C	G	1.223e^-4	0.711	DOWNSTREAM CG7766 & 1 other INTERGENIC
2R	15133935	2R_15133935_SNP [dm3] 2R_19246430_SNP [dm6]	T	G	1.225e^-4	0.711	INTERGENIC
2L	14840296	2L_14840296_SNP [dm3] 2L_14840296_SNP [dm6]	C	T	1.228e^-4	0.711	DOWNSTREAM CR43805 INTERGENIC
2L	15803532	2L_15803532_SNP [dm3] 2L_15803532_SNP [dm6]	C	T	1.229e^-4	0.711	INTERGENIC
3R	20221332	3R_20221332_SNP [dm3] 3R_24395610_SNP [dm6]	C	T	1.230e^-4	0.711	UTR_3_PRIME nAChRalpha1
2R	1356990	2R_1356990_SNP [dm3] 2R_5469485_SNP [dm6]	G	A	1.234e^-4	0.711	INTRON CG30440	transposable element FlyBase
3L	5303331	3L_5303331_INS [dm3] 3L_5310231_INS [dm6]	C	CGCGCTG	1.239e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17125917	X_17125917_SNP [dm3] X_17231884_SNP [dm6]	T	A	1.241e^-4	0.711	UPSTREAM CG10597 INTERGENIC	transposable element FlyBase
3R	19010063	3R_19010063_SNP [dm3] 3R_23184341_SNP [dm6]	A	G	1.242e^-4	0.711	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9697027	3L_9697027_DEL [dm3] 3L_9703927_DEL [dm6]	TT	T	1.244e^-4	0.711	UPSTREAM CG16711 & 1 other INTERGENIC
3L	13277556	3L_13277556_SNP [dm3] 3L_13284456_SNP [dm6]	T	A	1.245e^-4	0.711	DOWNSTREAM CR45752 EXON CR43913
2L	2288388	2L_2288388_SNP [dm3] 2L_2288388_SNP [dm6]	T	A	1.245e^-4	0.711	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3R	23548975	3R_23548975_SNP [dm3] 3R_27723253_SNP [dm6]	G	T	1.246e^-4	0.711	INTERGENIC
2L	6896655	2L_6896655_SNP [dm3] 2L_6896655_SNP [dm6]	G	C	1.251e^-4	0.711	UPSTREAM Nlg2 INTRON Nlg2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16498313	3L_16498313_SNP [dm3] 3L_16505213_SNP [dm6]	T	C	1.264e^-4	0.711	SYNONYMOUS_CODING CG43373 UTR_3_PRIME CG43373
2L	16118057	2L_16118057_DEL [dm3] 2L_16118057_DEL [dm6]	CCA	C	1.268e^-4	0.711	INTERGENIC
2R	9636345	2R_9636345_SNP [dm3] 2R_13748840_SNP [dm6]	A	C	1.272e^-4	0.711	UTR_3_PRIME fas
3R	14191332	3R_14191332_SNP [dm3] 3R_18365610_SNP [dm6]	T	C	1.272e^-4	0.711	NON_SYNONYMOUS_CODING WRNexo SPLICE_SITE_REGION WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	2265904	3L_2265904_SNP [dm3] 3L_2265904_SNP [dm6]	G	A	1.279e^-4	0.711	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1230386	2R_1230386_DEL [dm3] 2R_5342881_DEL [dm6]	CCAAGGAAATGAATAGAACA...	C	1.281e^-4	0.711	INTERGENIC
3R	14191368	3R_14191368_SNP [dm3] 3R_18365646_SNP [dm6]	A	T	1.283e^-4	0.711	UPSTREAM Nup43 INTRON WRNexo	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	8149957	2L_8149957_SNP [dm3] 2L_8149957_SNP [dm6]	G	A	1.288e^-4	0.711	INTRON CG8552 & 1 other
2L	15774488	2L_15774488_SNP [dm3] 2L_15774488_SNP [dm6]	A	G	1.289e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	4948072	3R_4948072_SNP [dm3] 3R_9122350_SNP [dm6]	T	G	1.290e^-4	0.711	INTRON pum
3L	5824375	3L_5824375_SNP [dm3] 3L_5831275_SNP [dm6]	T	C	1.291e^-4	0.711	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5824379	3L_5824379_INS [dm3] 3L_5831279_INS [dm6]	C	CCT	1.291e^-4	0.711	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9822562	3R_9822562_SNP [dm3] 3R_13996840_SNP [dm6]	A	C	1.294e^-4	0.711	INTRON rdx
2L	8660032	2L_8660032_SNP [dm3] 2L_8660032_SNP [dm6]	G	A	1.296e^-4	0.711	INTRON Sema-1a
2L	15956011	2L_15956011_SNP [dm3] 2L_15956011_SNP [dm6]	C	T	1.302e^-4	0.711	INTRON beat-Ib	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	2023101	2L_2023101_SNP [dm3] 2L_2023101_SNP [dm6]	T	C	1.303e^-4	0.711	UPSTREAM CG4238 INTRON CG4238
2L	16428856	2L_16428856_SNP [dm3] 2L_16428856_SNP [dm6]	A	T	1.305e^-4	0.711	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12972237	X_12972237_SNP [dm3] X_13078204_SNP [dm6]	C	T	1.305e^-4	0.711	UTR_3_PRIME rad	TF binding site mE1_TFBS_kn
2L	1065390	2L_1065390_SNP [dm3] 2L_1065390_SNP [dm6]	G	T	1.308e^-4	0.711	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5486628	2L_5486628_SNP [dm3] 2L_5486628_SNP [dm6]	G	A	1.312e^-4	0.711	UPSTREAM CR45287 INTERGENIC
2L	12547139	2L_12547139_SNP [dm3] 2L_12547139_SNP [dm6]	T	C	1.314e^-4	0.711	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6965061	2L_6965061_SNP [dm3] 2L_6965061_SNP [dm6]	T	C	1.320e^-4	0.711	SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7118473	X_7118473_SNP [dm3] X_7224440_SNP [dm6]	C	G	1.320e^-4	0.711	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4267715	2L_4267715_SNP [dm3] 2L_4267715_SNP [dm6]	T	A	1.322e^-4	0.711	INTERGENIC
3L	15082732	3L_15082732_SNP [dm3] 3L_15089632_SNP [dm6]	T	C	1.330e^-4	0.711	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13574830	2L_13574830_SNP [dm3] 2L_13574830_SNP [dm6]	C	G	1.344e^-4	0.711	INTRON kuz
3R	10441251	3R_10441251_SNP [dm3] 3R_14615529_SNP [dm6]	G	A	1.344e^-4	0.711	INTRON CG14853
3L	10872776	3L_10872776_SNP [dm3] 3L_10879676_SNP [dm6]	C	T	1.345e^-4	0.711	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17387290	2L_17387290_SNP [dm3] 2L_17387290_SNP [dm6]	T	G	1.355e^-4	0.711	INTRON CLIP-190
2L	8705500	2L_8705500_SNP [dm3] 2L_8705500_SNP [dm6]	A	C	1.357e^-4	0.711	UPSTREAM CG9314 DOWNSTREAM CR44992 INTRON Hnf4
3L	2002059	3L_2002059_SNP [dm3] 3L_2002059_SNP [dm6]	T	C	1.367e^-4	0.711	INTERGENIC
3L	5956640	3L_5956640_SNP [dm3] 3L_5963540_SNP [dm6]	G	A	1.372e^-4	0.711	INTERGENIC
3R	9559035	3R_9559035_SNP [dm3] 3R_13733313_SNP [dm6]	C	T	1.373e^-4	0.711	INTRON CG34383	TF binding site BDTNP1_TFBS_dl
2L	7544084	2L_7544084_SNP [dm3] 2L_7544084_SNP [dm6]	T	C	1.374e^-4	0.711	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	18150437	3L_18150437_SNP [dm3] 3L_18157337_SNP [dm6]	G	T	1.381e^-4	0.711	INTRON CG13699
2R	2047804	2R_2047804_SNP [dm3] 2R_6160299_SNP [dm6]	C	A	1.381e^-4	0.711	DOWNSTREAM CR43904 INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12132397	2L_12132397_SNP [dm3] 2L_12132397_SNP [dm6]	T	G	1.381e^-4	0.711	INTRON rho-6
2R	6929907	2R_6929907_SNP [dm3] 2R_11042402_SNP [dm6]	A	T	1.384e^-4	0.711	INTRON luna	TF binding site mE1_TFBS_cad
2L	16118061	2L_16118061_SNP [dm3] 2L_16118061_SNP [dm6]	C	T	1.387e^-4	0.711	INTERGENIC
2R	8944268	2R_8944268_SNP [dm3] 2R_13056763_SNP [dm6]	G	T	1.392e^-4	0.711	UTR_3_PRIME Drl-2
2L	13870328	2L_13870328_SNP [dm3] 2L_13870328_SNP [dm6]	A	G	1.396e^-4	0.711	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	14553148	2R_14553148_SNP [dm3] 2R_18665643_SNP [dm6]	A	T	1.399e^-4	0.711	INTRON CG33136	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	18891231	3L_18891231_SNP [dm3] 3L_18898131_SNP [dm6]	C	T	1.405e^-4	0.711	UPSTREAM RpL26 INTRON CG3902
X	22225725	X_22225725_SNP [dm3] X_22823889_SNP [dm6]	C	T	1.414e^-4	0.711	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
2L	15749014	2L_15749014_SNP [dm3] 2L_15749014_SNP [dm6]	T	C	1.416e^-4	0.711	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
X	4864176	X_4864176_DEL [dm3] X_4970143_DEL [dm6]	TGC	T	1.416e^-4	0.711	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11750363	2L_11750363_DEL [dm3] 2L_11750363_DEL [dm6]	TATGCGC	T	1.417e^-4	0.711	INTERGENIC
2R	8915390	2R_8915390_SNP [dm3] 2R_13027885_SNP [dm6]	T	C	1.419e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9147784	3L_9147784_SNP [dm3] 3L_9154684_SNP [dm6]	C	T	1.430e^-4	0.711	INTRON Rdl	TF binding site BDTNP1_TFBS_dl
3R	13313458	3R_13313458_SNP [dm3] 3R_17487736_SNP [dm6]	T	A	1.434e^-4	0.711	INTRON Dscam3
3R	13794550	3R_13794550_SNP [dm3] 3R_17968828_SNP [dm6]	A	G	1.443e^-4	0.711	INTRON cpo
2L	14852125	2L_14852125_SNP [dm3] 2L_14852125_SNP [dm6]	C	A	1.454e^-4	0.711	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26106610	3R_26106610_SNP [dm3] 3R_30280888_SNP [dm6]	C	T	1.455e^-4	0.711	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14373306	3R_14373306_SNP [dm3] 3R_18547584_SNP [dm6]	T	A	1.459e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9769603	3L_9769603_SNP [dm3] 3L_9776503_SNP [dm6]	T	G	1.460e^-4	0.711	INTRON CG8177
X	17387293	X_17387293_SNP [dm3] X_17493260_SNP [dm6]	A	G	1.460e^-4	0.711	INTRON CG43658
3R	22487082	3R_22487082_SNP [dm3] 3R_26661360_SNP [dm6]	C	G	1.463e^-4	0.711	INTRON beat-VII
2L	19931936	2L_19931936_SNP [dm3] 2L_19931936_SNP [dm6]	T	C	1.464e^-4	0.711	INTRON sick
X	2654983	X_2654983_SNP [dm3] X_2760950_SNP [dm6]	C	A	1.469e^-4	0.711	INTRON kirre
2R	1225702	2R_1225702_SNP [dm3] 2R_5338197_SNP [dm6]	A	T	1.479e^-4	0.711	INTERGENIC	transposable element FlyBase
2R	2934294	2R_2934294_SNP [dm3] 2R_7046789_SNP [dm6]	T	G	1.482e^-4	0.711	INTRON Tsp42El
3R	11272927	3R_11272927_SNP [dm3] 3R_15447205_SNP [dm6]	A	T	1.484e^-4	0.711	INTRON AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21114804	3L_21114804_SNP [dm3] 3L_21121704_SNP [dm6]	G	C	1.495e^-4	0.711	UTR_5_PRIME CG43938 INTRON ko	TF binding site mE1_TFBS_cad
2L	16241979	2L_16241979_SNP [dm3] 2L_16241979_SNP [dm6]	C	A	1.496e^-4	0.711	UTR_5_PRIME CG42818 DOWNSTREAM CG42817
X	9335527	X_9335527_SNP [dm3] X_9441494_SNP [dm6]	G	A	1.500e^-4	0.711	INTRON mgl
2L	19424468	2L_19424468_SNP [dm3] 2L_19424468_SNP [dm6]	G	A	1.503e^-4	0.711	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
3L	21121264	3L_21121264_SNP [dm3] 3L_21128164_SNP [dm6]	G	A	1.505e^-4	0.711	INTRON ko
3R	21054606	3R_21054606_SNP [dm3] 3R_25228884_SNP [dm6]	G	A	1.506e^-4	0.711	INTRON Cad96Cb
3R	23795111	3R_23795111_SNP [dm3] 3R_27969389_SNP [dm6]	C	T	1.509e^-4	0.711	SYNONYMOUS_CODING betaTub97EF INTRON betaTub97EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10809323	X_10809323_SNP [dm3] X_10915290_SNP [dm6]	T	G	1.510e^-4	0.711	INTRON CG43901
3R	22738679	3R_22738679_SNP [dm3] 3R_26912957_SNP [dm6]	C	T	1.510e^-4	0.711	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	4284348	2R_4284348_SNP [dm3] 2R_8396843_SNP [dm6]	C	T	1.514e^-4	0.711	SYNONYMOUS_CODING CG2121 DOWNSTREAM pdm3	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11447504	3L_11447504_SNP [dm3] 3L_11454404_SNP [dm6]	G	T	1.514e^-4	0.711	INTERGENIC
2L	3943771	2L_3943771_SNP [dm3] 2L_3943771_SNP [dm6]	T	A	1.516e^-4	0.711	INTRON fred
2R	20932641	2R_20932641_SNP [dm3] 2R_25045118_SNP [dm6]	G	A	1.516e^-4	0.711	INTRON gsb-n	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	15039252	2L_15039252_INS [dm3] 2L_15039252_INS [dm6]	C	TCAGTTG	1.516e^-4	0.711	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	21705408	2L_21705408_SNP [dm3] 2L_21705408_SNP [dm6]	C	A	1.519e^-4	0.711	INTRON CG31619	transposable element FlyBase
3L	11447501	3L_11447501_INS [dm3] 3L_11454401_INS [dm6]	CT	TAAAA	1.519e^-4	0.711	INTERGENIC
2L	16118140	2L_16118140_SNP [dm3] 2L_16118140_SNP [dm6]	T	G	1.521e^-4	0.711	INTERGENIC
2R	12780257	2R_12780257_INS [dm3] 2R_16892752_INS [dm6]	A	TGCT	1.529e^-4	0.711	INTRON CG8910	TF binding site mE1_TFBS_inv
2L	8802838	2L_8802838_SNP [dm3] 2L_8802838_SNP [dm6]	T	G	1.533e^-4	0.711	INTERGENIC
2R	1221546	2R_1221546_SNP [dm3] 2R_5334041_SNP [dm6]	T	G	1.536e^-4	0.711	INTERGENIC	transposable element FlyBase
2R	14294819	2R_14294819_SNP [dm3] 2R_18407314_SNP [dm6]	C	T	1.537e^-4	0.711	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2002405	3L_2002405_SNP [dm3] 3L_2002405_SNP [dm6]	A	T	1.537e^-4	0.711	DOWNSTREAM CG42841 INTERGENIC
2L	17356221	2L_17356221_SNP [dm3] 2L_17356221_SNP [dm6]	T	G	1.538e^-4	0.711	DOWNSTREAM CR44345 INTERGENIC
3L	9791387	3L_9791387_SNP [dm3] 3L_9798287_SNP [dm6]	A	G	1.541e^-4	0.711	UPSTREAM Ilp1 & 2 others INTERGENIC
2L	15039259	2L_15039259_SNP [dm3] 2L_15039259_SNP [dm6]	C	T	1.541e^-4	0.711	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	7275940	3L_7275940_SNP [dm3] 3L_7282840_SNP [dm6]	G	A	1.544e^-4	0.711	INTRON unc-13-4A
3R	19576063	3R_19576063_SNP [dm3] 3R_23750341_SNP [dm6]	T	C	1.544e^-4	0.711	SYNONYMOUS_CODING Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
3R	11272801	3R_11272801_SNP [dm3] 3R_15447079_SNP [dm6]	G	A	1.552e^-4	0.711	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26106219	3R_26106219_SNP [dm3] 3R_30280497_SNP [dm6]	G	A	1.553e^-4	0.711	INTRON hdc
3R	22271608	3R_22271608_DEL [dm3] 3R_26445886_DEL [dm6]	GAAGGTTGG	G	1.558e^-4	0.711	INTRON tx
2L	13740426	2L_13740426_SNP [dm3] 2L_13740426_SNP [dm6]	A	G	1.564e^-4	0.711	INTERGENIC
3L	9141092	3L_9141092_INS [dm3] 3L_9147992_INS [dm6]	G	GG	1.565e^-4	0.711	UTR_3_PRIME Rdl
2L	15997966	2L_15997966_SNP [dm3] 2L_15997966_SNP [dm6]	G	A	1.567e^-4	0.711	INTERGENIC
3R	13669646	3R_13669646_SNP [dm3] 3R_17843924_SNP [dm6]	A	T	1.570e^-4	0.711	INTRON tinc
3R	14189776	3R_14189776_SNP [dm3] 3R_18364054_SNP [dm6]	A	G	1.570e^-4	0.711	SYNONYMOUS_CODING CG7669 DOWNSTREAM WRNexo
3R	14368987	3R_14368987_SNP [dm3] 3R_18543265_SNP [dm6]	T	G	1.573e^-4	0.711	INTRON fru
2L	12479172	2L_12479172_SNP [dm3] 2L_12479172_SNP [dm6]	A	G	1.578e^-4	0.711	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4454023	2L_4454023_SNP [dm3] 2L_4454023_SNP [dm6]	C	A	1.579e^-4	0.711	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3236642	2R_3236642_SNP [dm3] 2R_7349137_SNP [dm6]	G	A	1.580e^-4	0.711	INTRON Dscam1
3L	5816655	3L_5816655_SNP [dm3] 3L_5823555_SNP [dm6]	A	T	1.581e^-4	0.711	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14035503	2R_14035503_SNP [dm3] 2R_18147998_SNP [dm6]	C	T	1.585e^-4	0.711	UPSTREAM CG17680 DOWNSTREAM CG5742 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16385680	2L_16385680_SNP [dm3] 2L_16385680_SNP [dm6]	A	C	1.598e^-4	0.711	INTERGENIC
2R	8878843	2R_8878843_SNP [dm3] 2R_12991338_SNP [dm6]	A	T	1.599e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3862288	3R_3862288_SNP [dm3] 3R_8036566_SNP [dm6]	A	T	1.607e^-4	0.711	UTR_3_PRIME unc-45
2L	6014071	2L_6014071_SNP [dm3] 2L_6014071_SNP [dm6]	A	G	1.617e^-4	0.711	SYNONYMOUS_CODING H2.0
3R	19300627	3R_19300627_SNP [dm3] 3R_23474905_SNP [dm6]	C	G	1.626e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8356148	3L_8356148_SNP [dm3] 3L_8363048_SNP [dm6]	A	T	1.626e^-4	0.711	INTERGENIC
3L	15182195	3L_15182195_DEL [dm3] 3L_15189095_DEL [dm6]	GGT	AC	1.633e^-4	0.711	INTERGENIC
3R	22443163	3R_22443163_SNP [dm3] 3R_26617441_SNP [dm6]	A	T	1.641e^-4	0.711	INTERGENIC
3R	10630278	3R_10630278_INS [dm3] 3R_14804556_INS [dm6]	A	AGAAAGGTTCTCTA...	1.642e^-4	0.711	UTR_3_PRIME btsz DOWNSTREAM CG14857
2L	11750362	2L_11750362_SNP [dm3] 2L_11750362_SNP [dm6]	T	C	1.643e^-4	0.711	INTERGENIC
2R	8851673	2R_8851673_SNP [dm3] 2R_12964168_SNP [dm6]	T	A	1.648e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11772829	2R_11772829_SNP [dm3] 2R_15885324_SNP [dm6]	A	C	1.649e^-4	0.711	INTRON sli	TF binding site mE1_TFBS_sens
2R	11594127	2R_11594127_SNP [dm3] 2R_15706622_SNP [dm6]	C	T	1.649e^-4	0.711	INTERGENIC
3R	19566529	3R_19566529_SNP [dm3] 3R_23740807_SNP [dm6]	C	T	1.653e^-4	0.711	INTRON Hmgcr
3R	19300605	3R_19300605_SNP [dm3] 3R_23474883_SNP [dm6]	G	A	1.654e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	13730708	2L_13730708_SNP [dm3] 2L_13730708_SNP [dm6]	C	T	1.655e^-4	0.711	INTERGENIC
3R	16283805	3R_16283805_SNP [dm3] 3R_20458083_SNP [dm6]	T	C	1.656e^-4	0.711	INTRON Gfrl
2R	8920757	2R_8920757_SNP [dm3] 2R_13033252_SNP [dm6]	A	C	1.657e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7210958	3L_7210958_SNP [dm3] 3L_7217858_SNP [dm6]	T	C	1.658e^-4	0.711	INTERGENIC
3R	21624480	3R_21624480_SNP [dm3] 3R_25798758_SNP [dm6]	A	T	1.670e^-4	0.711	UPSTREAM CR43847 INTERGENIC
3L	16453968	3L_16453968_SNP [dm3] 3L_16460868_SNP [dm6]	A	T	1.677e^-4	0.711	INTRON CG33158
2R	14294579	2R_14294579_SNP [dm3] 2R_18407074_SNP [dm6]	A	G	1.682e^-4	0.711	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21802113	3R_21802113_INS [dm3] 3R_25976391_INS [dm6]	C	CCCCAATTCCTAT...	1.686e^-4	0.711	INTRON CG42261
2L	16368719	2L_16368719_SNP [dm3] 2L_16368719_SNP [dm6]	A	C	1.692e^-4	0.711	INTERGENIC
3L	9719722	3L_9719722_SNP [dm3] 3L_9726622_SNP [dm6]	C	T	1.693e^-4	0.711	UTR_3_PRIME defl UPSTREAM Naa60	TF binding site mE1_TFBS_HSA
X	4701548	X_4701548_SNP [dm3] X_4807515_SNP [dm6]	T	C	1.693e^-4	0.711	INTERGENIC
3R	22985300	3R_22985300_SNP [dm3] 3R_27159578_SNP [dm6]	C	T	1.695e^-4	0.711	SYNONYMOUS_CODING grass	TF binding site mE1_TFBS_cad
2L	8538315	2L_8538315_SNP [dm3] 2L_8538315_SNP [dm6]	G	A	1.698e^-4	0.711	DOWNSTREAM CG17834 INTRON CG17834
X	3112357	X_3112357_SNP [dm3] X_3218324_SNP [dm6]	A	G	1.700e^-4	0.711	INTRON dnc
2R	10988722	2R_10988722_SNP [dm3] 2R_15101217_SNP [dm6]	A	C	1.700e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	22279814	3R_22279814_SNP [dm3] 3R_26454092_SNP [dm6]	G	A	1.703e^-4	0.711	UTR_3_PRIME CG5447 UPSTREAM CG43117
3L	18868086	3L_18868086_SNP [dm3] 3L_18874986_SNP [dm6]	C	T	1.708e^-4	0.711	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3R	10637627	3R_10637627_SNP [dm3] 3R_14811905_SNP [dm6]	T	A	1.708e^-4	0.711	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
2L	2417736	2L_2417736_SNP [dm3] 2L_2417736_SNP [dm6]	A	T	1.709e^-4	0.711	NON_SYNONYMOUS_CODING CG34448 DOWNSTREAM CG34447
3R	20970004	3R_20970004_SNP [dm3] 3R_25144282_SNP [dm6]	A	T	1.710e^-4	0.711	INTERGENIC
3R	15014776	3R_15014776_SNP [dm3] 3R_19189054_SNP [dm6]	C	T	1.711e^-4	0.711	INTRON CG31475
3R	24812742	3R_24812742_SNP [dm3] 3R_28987020_SNP [dm6]	A	G	1.715e^-4	0.711	INTERGENIC
3R	23106534	3R_23106534_SNP [dm3] 3R_27280812_SNP [dm6]	A	G	1.715e^-4	0.711	UPSTREAM mrt INTRON mrt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	21970501	2L_21970501_SNP [dm3] 2L_21970501_SNP [dm6]	T	A	1.720e^-4	0.711	INTERGENIC
3R	18434029	3R_18434029_SNP [dm3] 3R_22608307_SNP [dm6]	G	A	1.726e^-4	0.711	UTR_3_PRIME Efa6 DOWNSTREAM CG31156
2R	14712643	2R_14712643_SNP [dm3] 2R_18825138_SNP [dm6]	A	G	1.734e^-4	0.711	INTRON CG15097	TF binding site mE1_TFBS_chinmo
2L	20301910	2L_20301910_SNP [dm3] 2L_20301910_SNP [dm6]	T	A	1.738e^-4	0.711	INTERGENIC
2L	2768744	2L_2768744_SNP [dm3] 2L_2768744_SNP [dm6]	C	T	1.738e^-4	0.711	SYNONYMOUS_CODING colt UPSTREAM Taf10b DOWNSTREAM Taf10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	16498349	3L_16498349_SNP [dm3] 3L_16505249_SNP [dm6]	C	A	1.740e^-4	0.711	INTRON CG43373
2L	1065228	2L_1065228_SNP [dm3] 2L_1065228_SNP [dm6]	T	G	1.749e^-4	0.711	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20971540	3R_20971540_SNP [dm3] 3R_25145818_SNP [dm6]	C	A	1.751e^-4	0.711	INTERGENIC
3L	8092877	3L_8092877_SNP [dm3] 3L_8099777_SNP [dm6]	C	G	1.751e^-4	0.711	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2R	1236977	2R_1236977_SNP [dm3] 2R_5349472_SNP [dm6]	G	C	1.752e^-4	0.711	INTERGENIC	transposable element FlyBase
2L	8937756	2L_8937756_SNP [dm3] 2L_8937756_SNP [dm6]	T	A	1.755e^-4	0.711	INTRON Tsp29Fb	TF binding site BDTNP1_TFBS_dl
3R	23114913	3R_23114913_SNP [dm3] 3R_27289191_SNP [dm6]	G	T	1.758e^-4	0.711	NON_SYNONYMOUS_CODING Hmu UPSTREAM bigmax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	2851873	2R_2851873_SNP [dm3] 2R_6964368_SNP [dm6]	T	A	1.763e^-4	0.711	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	8944249	2R_8944249_SNP [dm3] 2R_13056744_SNP [dm6]	G	T	1.765e^-4	0.711	UTR_3_PRIME Drl-2
3L	8037687	3L_8037687_SNP [dm3] 3L_8044587_SNP [dm6]	C	T	1.769e^-4	0.711	INTRON nmo
3R	1998687	3R_1998687_SNP [dm3] 3R_6172965_SNP [dm6]	C	T	1.774e^-4	0.711	UPSTREAM Osi1 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3452583	2L_3452583_SNP [dm3] 2L_3452583_SNP [dm6]	T	A	1.774e^-4	0.711	UTR_5_PRIME CG12795 DOWNSTREAM Snx1	TF binding site mE1_TFBS_cad
2L	19069403	2L_19069403_SNP [dm3] 2L_19069403_SNP [dm6]	A	T	1.783e^-4	0.712	UTR_5_PRIME CG10702 INTRON CG17343 & 1 other
3L	14051794	3L_14051794_SNP [dm3] 3L_14058694_SNP [dm6]	T	G	1.789e^-4	0.712	INTRON CG32138
2R	17103728	2R_17103728_SNP [dm3] 2R_21216223_SNP [dm6]	G	A	1.795e^-4	0.712	SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad
3R	19558992	3R_19558992_SNP [dm3] 3R_23733270_SNP [dm6]	G	A	1.796e^-4	0.712	START_GAINED Rpn9 UTR_5_PRIME Rpn9 UPSTREAM Hmgcr & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19069331	2L_19069331_SNP [dm3] 2L_19069331_SNP [dm6]	T	G	1.800e^-4	0.712	UTR_5_PRIME CG10702 INTRON CG17343 & 1 other
2L	6976254	2L_6976254_SNP [dm3] 2L_6976254_SNP [dm6]	A	C	1.802e^-4	0.712	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad
2L	17004196	2L_17004196_SNP [dm3] 2L_17004196_SNP [dm6]	G	T	1.806e^-4	0.712	INTERGENIC
3R	24060577	3R_24060577_SNP [dm3] 3R_28234855_SNP [dm6]	G	A	1.810e^-4	0.712	INTRON CG34354	TF binding site mE1_TFBS_chinmo
X	19512657	X_19512657_SNP [dm3] X_19618624_SNP [dm6]	T	G	1.810e^-4	0.712	UPSTREAM Tim9b & 1 other DOWNSTREAM CG14221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15245522	3R_15245522_INS [dm3] 3R_19419800_INS [dm6]	T	TATAAGTTAC	1.826e^-4	0.716	INTRON CG31221
2L	14900805	2L_14900805_SNP [dm3] 2L_14900805_SNP [dm6]	A	C	1.833e^-4	0.716	INTERGENIC
3R	14902992	3R_14902992_SNP [dm3] 3R_19077270_SNP [dm6]	C	T	1.834e^-4	0.716	INTRON cdi
3L	13181596	3L_13181596_SNP [dm3] 3L_13188496_SNP [dm6]	A	T	1.841e^-4	0.716	INTERGENIC
X	3467352	X_3467352_SNP [dm3] X_3573319_SNP [dm6]	A	T	1.843e^-4	0.716	INTRON CG2875	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	6014540	2L_6014540_SNP [dm3] 2L_6014540_SNP [dm6]	T	G	1.844e^-4	0.716	INTRON H2.0
2L	6937366	2L_6937366_SNP [dm3] 2L_6937366_SNP [dm6]	G	A	1.853e^-4	0.718	INTRON CG18304
2R	2590984	2R_2590984_SNP [dm3] 2R_6703479_SNP [dm6]	G	A	1.895e^-4	0.723	SYNONYMOUS_CODING CG3409 UTR_3_PRIME CG45092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12302140	2L_12302140_SNP [dm3] 2L_12302140_SNP [dm6]	A	T	1.896e^-4	0.723	INTRON aret
3R	16167027	3R_16167027_SNP [dm3] 3R_20341305_SNP [dm6]	T	A	1.901e^-4	0.723	INTRON Ir92a	TF binding site mE1_TFBS_cad
2L	9801443	2L_9801443_SNP [dm3] 2L_9801443_SNP [dm6]	G	A	1.905e^-4	0.723	INTRON nAChRalpha6
3R	24823319	3R_24823319_SNP [dm3] 3R_28997597_SNP [dm6]	G	A	1.909e^-4	0.723	INTRON wat
2R	15589991	2R_15589991_SNP [dm3] 2R_19702486_SNP [dm6]	G	T	1.913e^-4	0.723	DOWNSTREAM Obp56d INTERGENIC	regulatory region REDfly_CRMs
3R	5207445	3R_5207445_SNP [dm3] 3R_9381723_SNP [dm6]	A	G	1.915e^-4	0.723	INTRON FER
2L	11552298	2L_11552298_SNP [dm3] 2L_11552298_SNP [dm6]	C	A	1.923e^-4	0.723	INTERGENIC
2R	9665631	2R_9665631_INS [dm3] 2R_13778126_INS [dm6]	G	GATACTCG	1.926e^-4	0.723	UTR_3_PRIME S-Lap7 DOWNSTREAM S-Lap7 INTRON Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6975829	2L_6975829_SNP [dm3] 2L_6975829_SNP [dm6]	C	T	1.936e^-4	0.723	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4221892	2L_4221892_SNP [dm3] 2L_4221892_SNP [dm6]	T	C	1.938e^-4	0.723	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	13480553	2R_13480553_SNP [dm3] 2R_17593048_SNP [dm6]	G	A	1.941e^-4	0.723	UTR_5_PRIME lack UPSTREAM CG30105	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14851989	2L_14851989_SNP [dm3] 2L_14851989_SNP [dm6]	A	T	1.944e^-4	0.723	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	7210969	3L_7210969_SNP [dm3] 3L_7217869_SNP [dm6]	T	C	1.945e^-4	0.723	INTERGENIC
3L	10594576	3L_10594576_DEL [dm3] 3L_10601476_DEL [dm6]	AC	A	1.947e^-4	0.723	INTERGENIC
3L	13054248	3L_13054248_SNP [dm3] 3L_13061148_SNP [dm6]	G	A	1.949e^-4	0.723	SYNONYMOUS_CODING CG14115 UPSTREAM CG34428
X	4839219	X_4839219_DEL [dm3] X_4945186_DEL [dm6]	AA	A	1.956e^-4	0.723	INTRON Ptp4E
3R	3904429	3R_3904429_INS [dm3] 3R_8078707_INS [dm6]	T	TT	1.966e^-4	0.723	INTRON mAChR-B
2L	17013092	2L_17013092_SNP [dm3] 2L_17013092_SNP [dm6]	G	T	1.970e^-4	0.723	UTR_5_PRIME CG6304
2L	7964712	2L_7964712_SNP [dm3] 2L_7964712_SNP [dm6]	A	G	1.971e^-4	0.723	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12000585	2R_12000585_SNP [dm3] 2R_16113080_SNP [dm6]	G	C	1.972e^-4	0.723	INTRON Asph
2L	8538361	2L_8538361_SNP [dm3] 2L_8538361_SNP [dm6]	C	T	1.979e^-4	0.723	DOWNSTREAM CG17834 INTRON CG17834
2R	12063082	2R_12063082_SNP [dm3] 2R_16175577_SNP [dm6]	G	A	1.983e^-4	0.723	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
3R	16165788	3R_16165788_SNP [dm3] 3R_20340066_SNP [dm6]	G	T	1.984e^-4	0.723	INTRON Ir92a
2R	14296338	2R_14296338_SNP [dm3] 2R_18408833_SNP [dm6]	G	A	1.991e^-4	0.723	UTR_3_PRIME GstE8 UPSTREAM GstE9 DOWNSTREAM GstE8 & 1 other
2L	13891097	2L_13891097_SNP [dm3] 2L_13891097_SNP [dm6]	G	C	1.991e^-4	0.723	INTRON CenG1A
2R	5348337	2R_5348337_SNP [dm3] 2R_9460832_SNP [dm6]	T	C	1.995e^-4	0.723	INTRON Camta
2L	7962112	2L_7962112_INS [dm3] 2L_7962112_INS [dm6]	T	TT	1.996e^-4	0.723	INTRON Snoo
3L	14148564	3L_14148564_SNP [dm3] 3L_14155464_SNP [dm6]	A	G	1.999e^-4	0.723	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	9277757	X_9277757_SNP [dm3] X_9383724_SNP [dm6]	G	T	2.011e^-4	0.723	INTRON mgl
2L	15039304	2L_15039304_SNP [dm3] 2L_15039304_SNP [dm6]	A	C	2.011e^-4	0.723	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	7134673	3R_7134673_SNP [dm3] 3R_11308951_SNP [dm6]	C	T	2.017e^-4	0.723	INTERGENIC
3R	20975817	3R_20975817_SNP [dm3] 3R_25150095_SNP [dm6]	G	A	2.018e^-4	0.723	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9224177	2L_9224177_SNP [dm3] 2L_9224177_SNP [dm6]	C	T	2.019e^-4	0.723	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	13789160	3R_13789160_SNP [dm3] 3R_17963438_SNP [dm6]	G	A	2.021e^-4	0.723	INTRON cpo
X	4700914	X_4700914_SNP [dm3] X_4806881_SNP [dm6]	T	C	2.021e^-4	0.723	INTERGENIC
2L	6956432	2L_6956432_SNP [dm3] 2L_6956432_SNP [dm6]	A	T	2.030e^-4	0.723	UPSTREAM CG3430 & 1 other INTRON CG13775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	20971274	3R_20971274_SNP [dm3] 3R_25145552_SNP [dm6]	C	T	2.031e^-4	0.723	INTERGENIC
2L	6898352	2L_6898352_SNP [dm3] 2L_6898352_SNP [dm6]	T	A	2.033e^-4	0.723	INTRON Nlg2	TF binding site mE1_TFBS_chinmo
2L	6898353	2L_6898353_SNP [dm3] 2L_6898353_SNP [dm6]	A	T	2.033e^-4	0.723	INTRON Nlg2	TF binding site mE1_TFBS_chinmo
2L	6898361	2L_6898361_SNP [dm3] 2L_6898361_SNP [dm6]	C	A	2.033e^-4	0.723	INTRON Nlg2	TF binding site mE1_TFBS_chinmo
2L	6898366	2L_6898366_SNP [dm3] 2L_6898366_SNP [dm6]	T	C	2.033e^-4	0.723	INTRON Nlg2	TF binding site mE1_TFBS_chinmo
3R	9994403	3R_9994403_SNP [dm3] 3R_14168681_SNP [dm6]	A	C	2.042e^-4	0.723	UTR_3_PRIME Dop1R1
3L	18214875	3L_18214875_SNP [dm3] 3L_18221775_SNP [dm6]	T	A	2.047e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13130328	2L_13130328_SNP [dm3] 2L_13130328_SNP [dm6]	C	G	2.052e^-4	0.723	UPSTREAM CG5122 INTERGENIC
2R	1236580	2R_1236580_SNP [dm3] 2R_5349075_SNP [dm6]	T	C	2.055e^-4	0.723	INTERGENIC	transposable element FlyBase
2L	16095101	2L_16095101_SNP [dm3] 2L_16095101_SNP [dm6]	A	G	2.059e^-4	0.723	SYNONYMOUS_CODING CG4891
3L	5824374	3L_5824374_SNP [dm3] 3L_5831274_SNP [dm6]	G	A	2.060e^-4	0.723	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23818277	3R_23818277_SNP [dm3] 3R_27992555_SNP [dm6]	T	C	2.069e^-4	0.723	INTERGENIC
2R	4077286	2R_4077286_INS [dm3] 2R_8189781_INS [dm6]	TC	GGGT	2.073e^-4	0.723	INTRON LRP1
3L	16130337	3L_16130337_SNP [dm3] 3L_16137237_SNP [dm6]	A	T	2.076e^-4	0.723	UTR_5_PRIME CG5157 DOWNSTREAM CG16838 & 1 other	TF binding site mE1_TFBS_sens
2L	7998516	2L_7998516_SNP [dm3] 2L_7998516_SNP [dm6]	A	G	2.077e^-4	0.723	UPSTREAM CG7227 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	6393923	X_6393923_SNP [dm3] X_6499890_SNP [dm6]	T	C	2.093e^-4	0.723	INTRON CG42340
3L	8082567	3L_8082567_SNP [dm3] 3L_8089467_SNP [dm6]	C	A	2.096e^-4	0.723	INTRON Ect4 & 1 other	TF binding site mE1_TFBS_cad
2L	15038076	2L_15038076_SNP [dm3] 2L_15038076_SNP [dm6]	T	C	2.101e^-4	0.723	NON_SYNONYMOUS_CODING CIAPIN1 DOWNSTREAM yellow-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
2L	15040423	2L_15040423_SNP [dm3] 2L_15040423_SNP [dm6]	G	T	2.102e^-4	0.723	INTRON Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11551639	2L_11551639_SNP [dm3] 2L_11551639_SNP [dm6]	T	C	2.108e^-4	0.723	INTERGENIC
2L	4221899	2L_4221899_SNP [dm3] 2L_4221899_SNP [dm6]	G	C	2.108e^-4	0.723	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	22226263	X_22226263_SNP [dm3] X_22824427_SNP [dm6]	A	G	2.114e^-4	0.723	UTR_3_PRIME fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	16118172	2L_16118172_SNP [dm3] 2L_16118172_SNP [dm6]	C	A	2.118e^-4	0.723	INTERGENIC
2L	16037017	2L_16037017_SNP [dm3] 2L_16037017_SNP [dm6]	G	C	2.119e^-4	0.723	INTRON beat-Ic	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8407715	2L_8407715_SNP [dm3] 2L_8407715_SNP [dm6]	T	A	2.121e^-4	0.723	INTRON emb
2L	15039284	2L_15039284_SNP [dm3] 2L_15039284_SNP [dm6]	T	C	2.129e^-4	0.723	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23022773	3R_23022773_SNP [dm3] 3R_27197051_SNP [dm6]	A	G	2.130e^-4	0.723	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	14339544	3R_14339544_SNP [dm3] 3R_18513822_SNP [dm6]	T	C	2.132e^-4	0.723	UTR_5_PRIME fru INTRON fru
2R	8878603	2R_8878603_SNP [dm3] 2R_12991098_SNP [dm6]	A	T	2.133e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17645016	2R_17645016_SNP [dm3] 2R_21757511_SNP [dm6]	C	A	2.137e^-4	0.723	SYNONYMOUS_CODING Grx-1
3L	9719810	3L_9719810_SNP [dm3] 3L_9726710_SNP [dm6]	A	G	2.138e^-4	0.723	UPSTREAM Naa60 DOWNSTREAM defl INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4709195	2L_4709195_SNP [dm3] 2L_4709195_SNP [dm6]	G	T	2.140e^-4	0.723	INTRON CG34351
2R	14780117	2R_14780117_SNP [dm3] 2R_18892612_SNP [dm6]	T	A	2.143e^-4	0.723	INTRON sano
2R	4275993	2R_4275993_SNP [dm3] 2R_8388488_SNP [dm6]	C	A	2.151e^-4	0.723	INTRON pdm3
3R	15392212	3R_15392212_SNP [dm3] 3R_19566490_SNP [dm6]	G	A	2.152e^-4	0.723	INTRON Dys
2L	20297276	2L_20297276_SNP [dm3] 2L_20297276_SNP [dm6]	G	T	2.154e^-4	0.723	EXON CR43414
3L	15918257	3L_15918257_INS [dm3] 3L_15925157_INS [dm6]	A	AATTTGTATCGAG...	2.160e^-4	0.723	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4487612	2L_4487612_SNP [dm3] 2L_4487612_SNP [dm6]	C	T	2.163e^-4	0.723	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27398046	3R_27398046_SNP [dm3] 3R_31572324_SNP [dm6]	C	G	2.170e^-4	0.723	UTR_5_PRIME gammaCOP INTRON gammaCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	22463469	3R_22463469_SNP [dm3] 3R_26637747_SNP [dm6]	T	A	2.172e^-4	0.723	DOWNSTREAM TwdlS INTERGENIC
3L	19623575	3L_19623575_SNP [dm3] 3L_19630475_SNP [dm6]	G	C	2.175e^-4	0.723	INTRON wnd
3L	20161784	3L_20161784_SNP [dm3] 3L_20168684_SNP [dm6]	T	C	2.177e^-4	0.723	UTR_5_PRIME CG42674 INTRON CG42674
2L	4807806	2L_4807806_SNP [dm3] 2L_4807806_SNP [dm6]	T	A	2.178e^-4	0.723	INTERGENIC
2R	5817782	2R_5817782_SNP [dm3] 2R_9930277_SNP [dm6]	C	T	2.179e^-4	0.723	UPSTREAM Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10597774	3L_10597774_SNP [dm3] 3L_10604674_SNP [dm6]	G	A	2.189e^-4	0.723	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19947643	2L_19947643_SNP [dm3] 2L_19947643_SNP [dm6]	C	G	2.189e^-4	0.723	INTRON sick
2L	1699878	2L_1699878_SNP [dm3] 2L_1699878_SNP [dm6]	C	A	2.196e^-4	0.723	UTR_3_PRIME chinmo
2L	10601976	2L_10601976_SNP [dm3] 2L_10601976_SNP [dm6]	T	G	2.197e^-4	0.723	INTRON Trim9
2R	13714524	2R_13714524_SNP [dm3] 2R_17827019_SNP [dm6]	G	T	2.198e^-4	0.723	INTRON grh	transposable element FlyBase
3L	9791174	3L_9791174_SNP [dm3] 3L_9798074_SNP [dm6]	G	C	2.217e^-4	0.723	UPSTREAM Ilp1 & 2 others INTERGENIC
2L	3943777	2L_3943777_SNP [dm3] 2L_3943777_SNP [dm6]	C	T	2.219e^-4	0.723	INTRON fred
3L	10593360	3L_10593360_SNP [dm3] 3L_10600260_SNP [dm6]	A	G	2.219e^-4	0.723	INTERGENIC
3L	24220121	3L_24220121_SNP [dm3] 3L_24227021_SNP [dm6]	A	C	2.222e^-4	0.723	INTRON Snap25
2R	4290983	2R_4290983_SNP [dm3] 2R_8403478_SNP [dm6]	C	G	2.223e^-4	0.723	INTRON CG2121
2R	2075232	2R_2075232_SNP [dm3] 2R_6187727_SNP [dm6]	T	A	2.223e^-4	0.723	DOWNSTREAM Ptr INTRON Ptr
3R	25779472	3R_25779472_SNP [dm3] 3R_29953750_SNP [dm6]	G	A	2.225e^-4	0.723	INTRON TkR99D
2L	6937649	2L_6937649_SNP [dm3] 2L_6937649_SNP [dm6]	C	A	2.239e^-4	0.726	NON_SYNONYMOUS_CODING CG18304 INTRON CG18304
3R	16167421	3R_16167421_SNP [dm3] 3R_20341699_SNP [dm6]	A	G	2.248e^-4	0.726	INTRON Ir92a
3L	9719711	3L_9719711_SNP [dm3] 3L_9726611_SNP [dm6]	A	G	2.250e^-4	0.726	UTR_3_PRIME defl UPSTREAM Naa60	TF binding site mE1_TFBS_HSA
2L	6911226	2L_6911226_SNP [dm3] 2L_6911226_SNP [dm6]	T	G	2.252e^-4	0.726	UTR_3_PRIME Rat1 & 1 other DOWNSTREAM Wee1 & 1 other
X	12284902	X_12284902_SNP [dm3] X_12390869_SNP [dm6]	A	T	2.253e^-4	0.726	INTERGENIC
2L	8537996	2L_8537996_SNP [dm3] 2L_8537996_SNP [dm6]	A	C	2.260e^-4	0.727	DOWNSTREAM CG17834 INTRON CG17834
3L	3983458	3L_3983458_SNP [dm3] 3L_3983458_SNP [dm6]	T	C	2.276e^-4	0.73	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16505419	2L_16505419_SNP [dm3] 2L_16505419_SNP [dm6]	T	G	2.276e^-4	0.73	INTRON Tpr2	TF binding site mE1_TFBS_cad
3L	19882286	3L_19882286_SNP [dm3] 3L_19889186_SNP [dm6]	A	G	2.281e^-4	0.73	UTR_3_PRIME Su_Tpl_ UPSTREAM Mi-2 INTRON Mi-2
3L	14473807	3L_14473807_SNP [dm3] 3L_14480707_SNP [dm6]	C	A	2.301e^-4	0.731	INTRON bbg
2L	3951170	2L_3951170_INS [dm3] 2L_3951170_INS [dm6]	C	CCAAGAC	2.301e^-4	0.731	INTRON fred
3R	14189803	3R_14189803_SNP [dm3] 3R_18364081_SNP [dm6]	A	T	2.305e^-4	0.731	SYNONYMOUS_CODING CG7669 DOWNSTREAM WRNexo
2L	14840334	2L_14840334_SNP [dm3] 2L_14840334_SNP [dm6]	T	A	2.309e^-4	0.731	DOWNSTREAM CR43805 INTERGENIC
2L	18270670	2L_18270670_SNP [dm3] 2L_18270670_SNP [dm6]	A	C	2.325e^-4	0.731	INTRON CG42750
2L	19907055	2L_19907055_SNP [dm3] 2L_19907055_SNP [dm6]	C	T	2.338e^-4	0.731	INTRON sick
2R	5911778	2R_5911778_SNP [dm3] 2R_10024273_SNP [dm6]	A	G	2.345e^-4	0.731	UTR_5_PRIME Pka-R2 INTRON Pka-R2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	3861686	3R_3861686_SNP [dm3] 3R_8035964_SNP [dm6]	T	C	2.354e^-4	0.731	SYNONYMOUS_CODING unc-45
3L	9417823	3L_9417823_SNP [dm3] 3L_9424723_SNP [dm6]	A	C	2.354e^-4	0.731	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4264149	2R_4264149_INS [dm3] 2R_8376644_INS [dm6]	T	TCAAATTACTCATT...	2.356e^-4	0.731	INTRON pdm3
X	12437557	X_12437557_SNP [dm3] X_12543524_SNP [dm6]	G	C	2.365e^-4	0.731	INTRON CG43921
2R	5259817	2R_5259817_SNP [dm3] 2R_9372312_SNP [dm6]	G	T	2.366e^-4	0.731	SPLICE_SITE_REGION CG13954 INTRON CG13954	TF binding site mE1_TFBS_chinmo
3R	15744350	3R_15744350_SNP [dm3] 3R_19918628_SNP [dm6]	A	T	2.368e^-4	0.731	UPSTREAM CG4465 INTRON CG4770
3L	14355564	3L_14355564_SNP [dm3] 3L_14362464_SNP [dm6]	C	T	2.371e^-4	0.731	INTRON fz
2L	2465943	2L_2465943_INS [dm3] 2L_2465943_INS [dm6]	T	TT	2.373e^-4	0.731	INTERGENIC	enhancer FlyBase
X	18736620	X_18736620_SNP [dm3] X_18842587_SNP [dm6]	A	G	2.374e^-4	0.731	UTR_3_PRIME Pvf1
2L	12547129	2L_12547129_SNP [dm3] 2L_12547129_SNP [dm6]	G	A	2.377e^-4	0.731	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14527465	2R_14527465_SNP [dm3] 2R_18639960_SNP [dm6]	C	A	2.378e^-4	0.731	UPSTREAM CheA56a & 2 others DOWNSTREAM tRNA:CR30227 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9715634	3L_9715634_SNP [dm3] 3L_9722534_SNP [dm6]	T	A	2.380e^-4	0.731	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site mE1_TFBS_sens
2L	8002259	2L_8002259_SNP [dm3] 2L_8002259_SNP [dm6]	T	C	2.382e^-4	0.731	INTRON Wwox
X	6678080	X_6678080_SNP [dm3] X_6784047_SNP [dm6]	C	T	2.384e^-4	0.731	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20971566	3R_20971566_SNP [dm3] 3R_25145844_SNP [dm6]	G	T	2.389e^-4	0.731	INTERGENIC
2L	10602020	2L_10602020_INS [dm3] 2L_10602020_INS [dm6]	T	AAC	2.392e^-4	0.731	INTRON Trim9
3R	16167067	3R_16167067_SNP [dm3] 3R_20341345_SNP [dm6]	A	T	2.398e^-4	0.731	INTRON Ir92a	TF binding site mE1_TFBS_cad
X	19906303	X_19906303_SNP [dm3] X_20012270_SNP [dm6]	C	T	2.402e^-4	0.731	INTRON Dop2R
3L	8029479	3L_8029479_SNP [dm3] 3L_8036379_SNP [dm6]	A	G	2.405e^-4	0.731	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3L	19645098	3L_19645098_SNP [dm3] 3L_19651998_SNP [dm6]	C	A	2.405e^-4	0.731	INTRON tey	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11750372	2L_11750372_SNP [dm3] 2L_11750372_SNP [dm6]	G	A	2.406e^-4	0.731	INTERGENIC
X	19512431	X_19512431_SNP [dm3] X_19618398_SNP [dm6]	T	C	2.409e^-4	0.731	DOWNSTREAM CG14221 INTRON CG12788 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6721847	X_6721847_SNP [dm3] X_6827814_SNP [dm6]	G	C	2.409e^-4	0.731	SPLICE_SITE_REGION nonC INTRON nonC	TF binding site mE1_TFBS_chinmo
2R	20353389	2R_20353389_SNP [dm3] 2R_24465866_SNP [dm6]	A	T	2.415e^-4	0.731	INTRON CG13579
2R	1237813	2R_1237813_SNP [dm3] 2R_5350308_SNP [dm6]	T	G	2.417e^-4	0.731	UPSTREAM CG10395 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9292285	3L_9292285_SNP [dm3] 3L_9299185_SNP [dm6]	A	T	2.422e^-4	0.731	INTERGENIC
3L	18891157	3L_18891157_SNP [dm3] 3L_18898057_SNP [dm6]	G	A	2.422e^-4	0.731	SPLICE_SITE_REGION CG3902 UPSTREAM RpL26 INTRON CG3902
2L	12478836	2L_12478836_SNP [dm3] 2L_12478836_SNP [dm6]	G	A	2.432e^-4	0.731	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2L	4274120	2L_4274120_SNP [dm3] 2L_4274120_SNP [dm6]	G	A	2.433e^-4	0.731	INTERGENIC
2L	6452075	2L_6452075_SNP [dm3] 2L_6452075_SNP [dm6]	T	C	2.433e^-4	0.731	INTRON retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7558785	2R_7558785_SNP [dm3] 2R_11671280_SNP [dm6]	T	C	2.434e^-4	0.731	UPSTREAM Tret1-1 INTRON Roc2 & 1 other
3L	6574469	3L_6574469_SNP [dm3] 3L_6581369_SNP [dm6]	C	T	2.435e^-4	0.731	INTRON CG18769 & 1 other
3R	5757326	3R_5757326_SNP [dm3] 3R_9931604_SNP [dm6]	C	T	2.441e^-4	0.731	INTRON Glut4EF
X	13986751	X_13986751_SNP [dm3] X_14092718_SNP [dm6]	T	A	2.448e^-4	0.731	INTERGENIC
X	16295943	X_16295943_INS [dm3] X_16401910_INS [dm6]	A	AA	2.450e^-4	0.731	INTRON CG9981
2R	12014158	2R_12014158_SNP [dm3] 2R_16126653_SNP [dm6]	C	A	2.452e^-4	0.731	INTRON spin
2R	5817783	2R_5817783_SNP [dm3] 2R_9930278_SNP [dm6]	C	A	2.459e^-4	0.732	UPSTREAM Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7527272	3L_7527272_SNP [dm3] 3L_7534172_SNP [dm6]	A	G	2.471e^-4	0.734	SPLICE_SITE_REGION lqf INTRON lqf	TF binding site mE1_TFBS_chinmo
2R	12776411	2R_12776411_SNP [dm3] 2R_16888906_SNP [dm6]	A	G	2.472e^-4	0.734	INTRON CG8910
2R	12233060	2R_12233060_SNP [dm3] 2R_16345555_SNP [dm6]	G	A	2.487e^-4	0.735	SYNONYMOUS_CODING Nup62 DOWNSTREAM wcd	TF binding site mE1_TFBS_sens
3R	14175017	3R_14175017_SNP [dm3] 3R_18349295_SNP [dm6]	A	T	2.487e^-4	0.735	INTRON CG15803
3L	18411484	3L_18411484_SNP [dm3] 3L_18418384_SNP [dm6]	A	G	2.489e^-4	0.735	INTERGENIC
3R	13893861	3R_13893861_SNP [dm3] 3R_18068139_SNP [dm6]	G	A	2.498e^-4	0.736	INTERGENIC
2R	8609283	2R_8609283_DEL [dm3] 2R_12721778_DEL [dm6]	ATGCAAGTA	A	2.501e^-4	0.736	INTRON CG42663
X	17659688	X_17659688_SNP [dm3] X_17765655_SNP [dm6]	G	A	2.504e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8264236	2L_8264236_SNP [dm3] 2L_8264236_SNP [dm6]	T	A	2.512e^-4	0.736	INTRON Btk29A
2L	4009346	2L_4009346_SNP [dm3] 2L_4009346_SNP [dm6]	C	A	2.526e^-4	0.736	DOWNSTREAM CG43774 INTERGENIC
3R	21801990	3R_21801990_SNP [dm3] 3R_25976268_SNP [dm6]	T	C	2.532e^-4	0.736	INTRON CG42261
2L	10486980	2L_10486980_SNP [dm3] 2L_10486980_SNP [dm6]	T	C	2.534e^-4	0.736	SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_inv
2L	14849690	2L_14849690_SNP [dm3] 2L_14849690_SNP [dm6]	A	C	2.535e^-4	0.736	UPSTREAM CG15279 INTRON CG15279
3R	26106349	3R_26106349_INS [dm3] 3R_30280627_INS [dm6]	T	TGT	2.538e^-4	0.736	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11348092	2L_11348092_SNP [dm3] 2L_11348092_SNP [dm6]	T	C	2.541e^-4	0.736	INTERGENIC
2R	9704862	2R_9704862_SNP [dm3] 2R_13817357_SNP [dm6]	A	G	2.544e^-4	0.736	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi
X	2458502	X_2458502_SNP [dm3] X_2564469_SNP [dm6]	C	T	2.546e^-4	0.736	INTRON Pdfr
2R	4264148	2R_4264148_SNP [dm3] 2R_8376643_SNP [dm6]	G	T	2.547e^-4	0.736	INTRON pdm3
2R	2579506	2R_2579506_SNP [dm3] 2R_6692001_SNP [dm6]	C	G	2.552e^-4	0.736	SYNONYMOUS_CODING CG9422
3L	10593359	3L_10593359_SNP [dm3] 3L_10600259_SNP [dm6]	G	A	2.563e^-4	0.736	INTERGENIC
2L	10602018	2L_10602018_SNP [dm3] 2L_10602018_SNP [dm6]	G	T	2.565e^-4	0.736	INTRON Trim9
3L	9712842	3L_9712842_SNP [dm3] 3L_9719742_SNP [dm6]	A	T	2.574e^-4	0.736	SYNONYMOUS_CODING CG14174 UPSTREAM CG18178 DOWNSTREAM nbs	TF binding site mE1_TFBS_sens
2L	14852123	2L_14852123_SNP [dm3] 2L_14852123_SNP [dm6]	A	C	2.576e^-4	0.736	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16428852	2L_16428852_SNP [dm3] 2L_16428852_SNP [dm6]	A	G	2.576e^-4	0.736	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9413326	3L_9413326_SNP [dm3] 3L_9420226_SNP [dm6]	T	A	2.576e^-4	0.736	UPSTREAM CG3967 INTRON CG3967
2L	15768835	2L_15768835_SNP [dm3] 2L_15768835_SNP [dm6]	C	T	2.576e^-4	0.736	SYNONYMOUS_CODING Ku80 UPSTREAM wek	TF binding site BDTNP1_TFBS_dl
2R	5358051	2R_5358051_DEL [dm3] 2R_9470546_DEL [dm6]	CC	C	2.578e^-4	0.736	INTRON Camta
3L	20088125	3L_20088125_SNP [dm3] 3L_20095025_SNP [dm6]	A	T	2.582e^-4	0.736	INTERGENIC
2R	8944257	2R_8944257_SNP [dm3] 2R_13056752_SNP [dm6]	C	T	2.596e^-4	0.736	UTR_3_PRIME Drl-2
2R	4264147	2R_4264147_SNP [dm3] 2R_8376642_SNP [dm6]	T	A	2.604e^-4	0.736	INTRON pdm3
3L	16482947	3L_16482947_SNP [dm3] 3L_16489847_SNP [dm6]	G	A	2.610e^-4	0.736	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	10637602	3R_10637602_SNP [dm3] 3R_14811880_SNP [dm6]	A	G	2.613e^-4	0.736	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
2L	19925887	2L_19925887_SNP [dm3] 2L_19925887_SNP [dm6]	A	C	2.624e^-4	0.736	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12776889	2R_12776889_SNP [dm3] 2R_16889384_SNP [dm6]	G	T	2.625e^-4	0.736	INTRON CG8910
2R	11761987	2R_11761987_SNP [dm3] 2R_15874482_SNP [dm6]	T	C	2.630e^-4	0.736	INTRON sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	14189720	3R_14189720_SNP [dm3] 3R_18363998_SNP [dm6]	T	C	2.630e^-4	0.736	DOWNSTREAM WRNexo INTRON CG7669
3R	14520666	3R_14520666_SNP [dm3] 3R_18694944_SNP [dm6]	C	G	2.632e^-4	0.736	UPSTREAM CG34282 INTERGENIC
2L	14846448	2L_14846448_SNP [dm3] 2L_14846448_SNP [dm6]	G	A	2.633e^-4	0.736	SYNONYMOUS_CODING CG15279
X	5817784	X_5817784_SNP [dm3] X_5923751_SNP [dm6]	G	T	2.640e^-4	0.736	INTRON CG3726
3L	9842236	3L_9842236_SNP [dm3] 3L_9849136_SNP [dm6]	T	C	2.641e^-4	0.736	INTRON RasGAP1
2L	12132857	2L_12132857_SNP [dm3] 2L_12132857_SNP [dm6]	C	A	2.641e^-4	0.736	INTRON rho-6
3R	22762127	3R_22762127_SNP [dm3] 3R_26936405_SNP [dm6]	T	A	2.641e^-4	0.736	INTRON sda
3R	14918600	3R_14918600_DEL [dm3] 3R_19092878_DEL [dm6]	AA	A	2.641e^-4	0.736	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14217752	3L_14217752_SNP [dm3] 3L_14224652_SNP [dm6]	G	C	2.661e^-4	0.739	INTRON nuf
3R	4040573	3R_4040573_SNP [dm3] 3R_8214851_SNP [dm6]	A	T	2.662e^-4	0.739	INTERGENIC
3R	25876795	3R_25876795_SNP [dm3] 3R_30051073_SNP [dm6]	C	T	2.664e^-4	0.739	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15893851	3L_15893851_SNP [dm3] 3L_15900751_SNP [dm6]	G	T	2.667e^-4	0.739	UTR_3_PRIME sff
2L	13866074	2L_13866074_SNP [dm3] 2L_13866074_SNP [dm6]	A	T	2.675e^-4	0.739	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	16166280	3R_16166280_SNP [dm3] 3R_20340558_SNP [dm6]	G	T	2.675e^-4	0.739	INTRON Ir92a
3L	9715358	3L_9715358_SNP [dm3] 3L_9722258_SNP [dm6]	C	T	2.682e^-4	0.74	SYNONYMOUS_CODING nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13349274	2L_13349274_SNP [dm3] 2L_13349274_SNP [dm6]	G	A	2.687e^-4	0.74	DOWNSTREAM CG9395 & 1 other INTERGENIC
2R	9657987	2R_9657987_SNP [dm3] 2R_13770482_SNP [dm6]	C	A	2.708e^-4	0.744	INTRON Cpr50Ca
2L	17903450	2L_17903450_SNP [dm3] 2L_17903450_SNP [dm6]	C	G	2.710e^-4	0.744	UPSTREAM CR45332 & 1 other INTERGENIC
2L	1155975	2L_1155975_SNP [dm3] 2L_1155975_SNP [dm6]	G	A	2.714e^-4	0.744	START_GAINED capt UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	17117172	3L_17117172_DEL [dm3] 3L_17124072_DEL [dm6]	CGGATGGAT	C	2.717e^-4	0.744	INTRON Rbp6	TF binding site BDTNP1_TFBS_da
2L	9801470	2L_9801470_SNP [dm3] 2L_9801470_SNP [dm6]	G	A	2.732e^-4	0.746	INTRON nAChRalpha6
X	11184985	X_11184985_DEL [dm3] X_11290952_DEL [dm6]	TCT	T	2.741e^-4	0.746	INTRON CG44422
2R	1227001	2R_1227001_SNP [dm3] 2R_5339496_SNP [dm6]	G	T	2.755e^-4	0.746	DOWNSTREAM CG10465 INTERGENIC
3L	10653278	3L_10653278_SNP [dm3] 3L_10660178_SNP [dm6]	C	T	2.761e^-4	0.746	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4261603	2R_4261603_SNP [dm3] 2R_8374098_SNP [dm6]	A	T	2.773e^-4	0.746	INTRON pdm3
3L	10589485	3L_10589485_SNP [dm3] 3L_10596385_SNP [dm6]	T	G	2.775e^-4	0.746	INTERGENIC
3L	3500383	3L_3500383_SNP [dm3] 3L_3500383_SNP [dm6]	C	A	2.781e^-4	0.746	INTRON CG42324
3L	5461842	3L_5461842_SNP [dm3] 3L_5468742_SNP [dm6]	C	A	2.781e^-4	0.746	INTERGENIC
3R	4405673	3R_4405673_SNP [dm3] 3R_8579951_SNP [dm6]	T	C	2.783e^-4	0.746	INTRON 5-HT2B
2R	4068113	2R_4068113_DEL [dm3] 2R_8180608_DEL [dm6]	TGGGTGGT	T	2.789e^-4	0.746	INTRON LRP1
3L	12671109	3L_12671109_SNP [dm3] 3L_12678009_SNP [dm6]	A	C	2.793e^-4	0.746	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16605655	2R_16605655_SNP [dm3] 2R_20718150_SNP [dm6]	C	G	2.799e^-4	0.746	INTRON dpr
2R	5102662	2R_5102662_SNP [dm3] 2R_9215157_SNP [dm6]	A	C	2.802e^-4	0.746	DOWNSTREAM CR44451 INTERGENIC
2L	3826527	2L_3826527_SNP [dm3] 2L_3826527_SNP [dm6]	C	T	2.806e^-4	0.746	SYNONYMOUS_CODING slp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2036857	2R_2036857_SNP [dm3] 2R_6149352_SNP [dm6]	A	G	2.814e^-4	0.746	INTRON EcR
3R	20831751	3R_20831751_SNP [dm3] 3R_25006029_SNP [dm6]	C	T	2.814e^-4	0.746	INTRON tnc
2R	2579500	2R_2579500_SNP [dm3] 2R_6691995_SNP [dm6]	C	T	2.822e^-4	0.746	SYNONYMOUS_CODING CG9422
3R	18361174	3R_18361174_SNP [dm3] 3R_22535452_SNP [dm6]	G	A	2.824e^-4	0.746	INTRON CG5326
2L	11551636	2L_11551636_SNP [dm3] 2L_11551636_SNP [dm6]	G	T	2.836e^-4	0.746	INTERGENIC
3R	19169181	3R_19169181_SNP [dm3] 3R_23343459_SNP [dm6]	C	T	2.852e^-4	0.746	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3731358	2L_3731358_SNP [dm3] 2L_3731358_SNP [dm6]	T	C	2.860e^-4	0.746	INTRON CG10019
3R	20967630	3R_20967630_SNP [dm3] 3R_25141908_SNP [dm6]	C	T	2.861e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13379472	2R_13379472_SNP [dm3] 2R_17491967_SNP [dm6]	T	G	2.863e^-4	0.746	SYNONYMOUS_CODING NT5E-2
2R	15137986	2R_15137986_SNP [dm3] 2R_19250481_SNP [dm6]	A	G	2.864e^-4	0.746	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
2L	12283445	2L_12283445_INS [dm3] 2L_12283445_INS [dm6]	G	GAG	2.874e^-4	0.746	INTRON aret
2R	8685540	2R_8685540_SNP [dm3] 2R_12798035_SNP [dm6]	G	A	2.874e^-4	0.746	INTRON sca EXON CR45137
2R	2052137	2R_2052137_SNP [dm3] 2R_6164632_SNP [dm6]	G	A	2.874e^-4	0.746	DOWNSTREAM tRNA:K2:42Ab INTRON EcR	TF binding site BDTNP1_TFBS_dl
2L	6904696	2L_6904696_SNP [dm3] 2L_6904696_SNP [dm6]	C	A	2.878e^-4	0.746	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19558502	3R_19558502_SNP [dm3] 3R_23732780_SNP [dm6]	A	T	2.881e^-4	0.746	UPSTREAM Hmgcr INTRON Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17327962	3R_17327962_SNP [dm3] 3R_21502240_SNP [dm6]	G	T	2.891e^-4	0.746	INTRON C15	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	10595272	3L_10595272_SNP [dm3] 3L_10602172_SNP [dm6]	C	G	2.892e^-4	0.746	INTERGENIC
2R	14454996	2R_14454996_SNP [dm3] 2R_18567491_SNP [dm6]	G	A	2.892e^-4	0.746	INTRON GEFmeso	TF binding site mE1_TFBS_cad
2L	13125519	2L_13125519_SNP [dm3] 2L_13125519_SNP [dm6]	C	A	2.896e^-4	0.746	INTERGENIC
3L	16721475	3L_16721475_SNP [dm3] 3L_16728375_SNP [dm6]	C	T	2.896e^-4	0.746	UPSTREAM PGRP-SB1 DOWNSTREAM Dbp73D INTERGENIC	regulatory region REDfly_CRMs
2L	12148522	2L_12148522_SNP [dm3] 2L_12148522_SNP [dm6]	G	A	2.897e^-4	0.746	INTRON CG31760
2R	18051766	2R_18051766_SNP [dm3] 2R_22164261_SNP [dm6]	A	G	2.906e^-4	0.746	SYNONYMOUS_CODING CG34206 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1226950	2R_1226950_SNP [dm3] 2R_5339445_SNP [dm6]	C	A	2.914e^-4	0.746	DOWNSTREAM CG10465 INTERGENIC
2R	4290992	2R_4290992_SNP [dm3] 2R_8403487_SNP [dm6]	T	A	2.923e^-4	0.746	INTRON CG2121
2R	4290994	2R_4290994_SNP [dm3] 2R_8403489_SNP [dm6]	G	A	2.923e^-4	0.746	INTRON CG2121
2R	4254170	2R_4254170_SNP [dm3] 2R_8366665_SNP [dm6]	C	A	2.924e^-4	0.746	UTR_5_PRIME boly DOWNSTREAM CG18449 INTRON pdm3
3R	26633597	3R_26633597_SNP [dm3] 3R_30807875_SNP [dm6]	T	G	2.930e^-4	0.746	SYNONYMOUS_CODING dj-1beta UPSTREAM cindr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14350320	3L_14350320_SNP [dm3] 3L_14357220_SNP [dm6]	A	G	2.930e^-4	0.746	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	2047900	2R_2047900_SNP [dm3] 2R_6160395_SNP [dm6]	G	T	2.940e^-4	0.746	DOWNSTREAM CR43904 INTRON EcR	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16697627	2L_16697627_SNP [dm3] 2L_16697627_SNP [dm6]	G	C	2.941e^-4	0.746	SYNONYMOUS_CODING grp UPSTREAM mir-9c & 2 others EXON CR44975
3L	8029476	3L_8029476_SNP [dm3] 3L_8036376_SNP [dm6]	T	C	2.943e^-4	0.746	INTRON nmo	TF binding site BDTNP1_TFBS_twi
2L	8660072	2L_8660072_SNP [dm3] 2L_8660072_SNP [dm6]	C	A	2.944e^-4	0.746	INTRON Sema-1a
3L	9160076	3L_9160076_SNP [dm3] 3L_9166976_SNP [dm6]	T	C	2.945e^-4	0.746	INTRON Rdl
2L	14851920	2L_14851920_SNP [dm3] 2L_14851920_SNP [dm6]	A	G	2.947e^-4	0.746	UPSTREAM CG15279 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	4456081	3R_4456081_SNP [dm3] 3R_8630359_SNP [dm6]	A	C	2.948e^-4	0.746	DOWNSTREAM 5-HT2B INTERGENIC
3R	11000135	3R_11000135_SNP [dm3] 3R_15174413_SNP [dm6]	C	A	2.951e^-4	0.746	DOWNSTREAM Mf INTRON Mf & 1 other
2L	14844952	2L_14844952_SNP [dm3] 2L_14844952_SNP [dm6]	T	G	2.954e^-4	0.746	DOWNSTREAM CG15279 INTERGENIC
2R	9166481	2R_9166481_SNP [dm3] 2R_13278976_SNP [dm6]	G	A	2.960e^-4	0.746	INTRON Dh31-R
3L	18411478	3L_18411478_SNP [dm3] 3L_18418378_SNP [dm6]	T	A	2.961e^-4	0.746	INTERGENIC
X	9140070	X_9140070_SNP [dm3] X_9246037_SNP [dm6]	G	T	2.969e^-4	0.746	UTR_3_PRIME amx DOWNSTREAM Larp7	TF binding site BDTNP1_TFBS_dl
2L	8264474	2L_8264474_SNP [dm3] 2L_8264474_SNP [dm6]	C	T	2.982e^-4	0.746	INTRON Btk29A
2L	19103632	2L_19103632_SNP [dm3] 2L_19103632_SNP [dm6]	T	C	2.989e^-4	0.746	DOWNSTREAM CG17344 & 1 other INTRON Lim3	TF binding site mE1_TFBS_cad
2L	8546338	2L_8546338_SNP [dm3] 2L_8546338_SNP [dm6]	T	G	2.991e^-4	0.746	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	10032859	3R_10032859_SNP [dm3] 3R_14207137_SNP [dm6]	C	T	3.002e^-4	0.746	INTRON Dop1R1
2R	18502118	2R_18502118_SNP [dm3] 2R_22614613_SNP [dm6]	A	G	3.013e^-4	0.746	UTR_5_PRIME CG33143
3R	11393070	3R_11393070_INS [dm3] 3R_15567348_INS [dm6]	T	TT	3.014e^-4	0.746	INTERGENIC
3L	7466279	3L_7466279_SNP [dm3] 3L_7473179_SNP [dm6]	C	T	3.015e^-4	0.746	DOWNSTREAM CG8541 INTERGENIC
2L	11052418	2L_11052418_SNP [dm3] 2L_11052418_SNP [dm6]	G	A	3.015e^-4	0.746	INTRON Samuel
3R	19566793	3R_19566793_SNP [dm3] 3R_23741071_SNP [dm6]	G	C	3.023e^-4	0.746	INTRON Hmgcr
X	3154457	X_3154457_SNP [dm3] X_3260424_SNP [dm6]	C	A	3.028e^-4	0.746	INTRON dnc
3L	21107610	3L_21107610_SNP [dm3] 3L_21114510_SNP [dm6]	A	T	3.028e^-4	0.746	INTRON ko	regulatory region REDfly_CRMs
2R	11719281	2R_11719281_SNP [dm3] 2R_15831776_SNP [dm6]	C	G	3.032e^-4	0.746	INTRON tun & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	10589754	3L_10589754_SNP [dm3] 3L_10596654_SNP [dm6]	T	G	3.038e^-4	0.746	INTERGENIC
2L	16544010	2L_16544010_SNP [dm3] 2L_16544010_SNP [dm6]	G	T	3.043e^-4	0.746	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13583296	2R_13583296_SNP [dm3] 2R_17695791_SNP [dm6]	T	C	3.047e^-4	0.746	UTR_3_PRIME rdgBbeta UPSTREAM swi2
2R	12013949	2R_12013949_SNP [dm3] 2R_16126444_SNP [dm6]	C	T	3.052e^-4	0.746	INTRON spin	TF binding site BDTNP1_TFBS_dl
X	12608588	X_12608588_SNP [dm3] X_12714555_SNP [dm6]	G	A	3.054e^-4	0.746	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
2R	8816070	2R_8816070_SNP [dm3] 2R_12928565_SNP [dm6]	C	T	3.056e^-4	0.746	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17406392	2L_17406392_SNP [dm3] 2L_17406392_SNP [dm6]	T	A	3.058e^-4	0.746	NON_SYNONYMOUS_CODING CLIP-190
2L	4807824	2L_4807824_SNP [dm3] 2L_4807824_SNP [dm6]	A	T	3.059e^-4	0.746	INTERGENIC
3L	18341581	3L_18341581_SNP [dm3] 3L_18348481_SNP [dm6]	T	A	3.060e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	13102843	3R_13102843_DEL [dm3] 3R_17277121_DEL [dm6]	TATG	T	3.061e^-4	0.746	INTERGENIC
2L	18450653	2L_18450653_SNP [dm3] 2L_18450653_SNP [dm6]	G	A	3.063e^-4	0.746	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
3R	23124771	3R_23124771_SNP [dm3] 3R_27299049_SNP [dm6]	C	A	3.063e^-4	0.746	INTRON CG3339
X	2458503	X_2458503_SNP [dm3] X_2564470_SNP [dm6]	C	G	3.071e^-4	0.746	INTRON Pdfr
3L	13284002	3L_13284002_DEL [dm3] 3L_13290902_DEL [dm6]	CC	C	3.080e^-4	0.746	DOWNSTREAM CR43912 EXON CR43912
3L	7207637	3L_7207637_SNP [dm3] 3L_7214537_SNP [dm6]	A	G	3.087e^-4	0.746	INTERGENIC
X	9140267	X_9140267_SNP [dm3] X_9246234_SNP [dm6]	C	T	3.093e^-4	0.746	SYNONYMOUS_CODING amx DOWNSTREAM Larp7	TF binding site BDTNP1_TFBS_dl
3L	2002383	3L_2002383_SNP [dm3] 3L_2002383_SNP [dm6]	C	T	3.094e^-4	0.746	DOWNSTREAM CG42841 INTERGENIC
3L	19380842	3L_19380842_SNP [dm3] 3L_19387742_SNP [dm6]	C	A	3.095e^-4	0.746	NON_SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206
3L	15237131	3L_15237131_SNP [dm3] 3L_15244031_SNP [dm6]	A	C	3.098e^-4	0.746	INTERGENIC
3L	7207771	3L_7207771_SNP [dm3] 3L_7214671_SNP [dm6]	G	C	3.101e^-4	0.746	INTERGENIC
3L	15956755	3L_15956755_SNP [dm3] 3L_15963655_SNP [dm6]	C	T	3.102e^-4	0.746	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11227251	3L_11227251_INS [dm3] 3L_11234151_INS [dm6]	G	GG	3.107e^-4	0.746	INTRON Ir68a
2R	2108862	2R_2108862_SNP [dm3] 2R_6221357_SNP [dm6]	G	C	3.121e^-4	0.746	INTRON bin3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14191433	3R_14191433_SNP [dm3] 3R_18365711_SNP [dm6]	T	C	3.134e^-4	0.746	SYNONYMOUS_CODING WRNexo UPSTREAM Nup43	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Ubx
2L	14838852	2L_14838852_SNP [dm3] 2L_14838852_SNP [dm6]	T	C	3.138e^-4	0.746	INTERGENIC
2R	2089063	2R_2089063_SNP [dm3] 2R_6201558_SNP [dm6]	G	T	3.139e^-4	0.746	NON_SYNONYMOUS_CODING CG8335	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2002416	3L_2002416_SNP [dm3] 3L_2002416_SNP [dm6]	G	T	3.139e^-4	0.746	DOWNSTREAM CG42841 INTERGENIC
3L	14235321	3L_14235321_SNP [dm3] 3L_14242221_SNP [dm6]	A	C	3.140e^-4	0.746	INTERGENIC
2R	9843555	2R_9843555_INS [dm3] 2R_13956050_INS [dm6]	T	TTGAT	3.146e^-4	0.746	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	6933790	2L_6933790_SNP [dm3] 2L_6933790_SNP [dm6]	A	T	3.147e^-4	0.746	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6748024	X_6748024_SNP [dm3] X_6853991_SNP [dm6]	A	T	3.148e^-4	0.746	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	6963458	2L_6963458_SNP [dm3] 2L_6963458_SNP [dm6]	G	T	3.166e^-4	0.746	SYNONYMOUS_CODING sip2 UPSTREAM Coprox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4082513	2L_4082513_SNP [dm3] 2L_4082513_SNP [dm6]	A	G	3.167e^-4	0.746	INTRON ed
3R	26610369	3R_26610369_SNP [dm3] 3R_30784647_SNP [dm6]	A	G	3.175e^-4	0.746	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10872574	3L_10872574_SNP [dm3] 3L_10879474_SNP [dm6]	G	T	3.175e^-4	0.746	NON_SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16402429	2L_16402429_SNP [dm3] 2L_16402429_SNP [dm6]	C	A	3.177e^-4	0.746	INTRON CG5888
X	4700818	X_4700818_SNP [dm3] X_4806785_SNP [dm6]	C	G	3.191e^-4	0.746	INTERGENIC
X	6738998	X_6738998_SNP [dm3] X_6844965_SNP [dm6]	T	C	3.198e^-4	0.746	NON_SYNONYMOUS_CODING CG4557	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18064908	3R_18064908_SNP [dm3] 3R_22239186_SNP [dm6]	G	T	3.198e^-4	0.746	INTRON SKIP
3R	15245511	3R_15245511_SNP [dm3] 3R_19419789_SNP [dm6]	T	A	3.205e^-4	0.746	INTRON CG31221
2R	18502112	2R_18502112_SNP [dm3] 2R_22614607_SNP [dm6]	A	G	3.226e^-4	0.746	UTR_5_PRIME CG33143
2L	12302133	2L_12302133_SNP [dm3] 2L_12302133_SNP [dm6]	G	A	3.228e^-4	0.746	INTRON aret
2L	8538322	2L_8538322_SNP [dm3] 2L_8538322_SNP [dm6]	A	T	3.229e^-4	0.746	DOWNSTREAM CG17834 INTRON CG17834
3L	10872518	3L_10872518_SNP [dm3] 3L_10879418_SNP [dm6]	A	T	3.239e^-4	0.746	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11940784	3R_11940784_SNP [dm3] 3R_16115062_SNP [dm6]	G	A	3.246e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_cad
X	6992165	X_6992165_SNP [dm3] X_7098132_SNP [dm6]	A	T	3.251e^-4	0.746	UPSTREAM Sxl DOWNSTREAM CG4615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11770124	2R_11770124_SNP [dm3] 2R_15882619_SNP [dm6]	T	G	3.254e^-4	0.746	SYNONYMOUS_CODING sli
3R	5739943	3R_5739943_SNP [dm3] 3R_9914221_SNP [dm6]	G	T	3.257e^-4	0.746	INTRON Glut4EF
2L	1147296	2L_1147296_SNP [dm3] 2L_1147296_SNP [dm6]	T	A	3.259e^-4	0.746	UTR_3_PRIME MFS3 UPSTREAM CG4749	TF binding site mE1_TFBS_chinmo
2R	17936835	2R_17936835_SNP [dm3] 2R_22049330_SNP [dm6]	C	T	3.265e^-4	0.746	INTERGENIC
3R	9858911	3R_9858911_SNP [dm3] 3R_14033189_SNP [dm6]	A	T	3.265e^-4	0.746	INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	10482166	2L_10482166_SNP [dm3] 2L_10482166_SNP [dm6]	T	C	3.270e^-4	0.746	SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2	TF binding site mE1_TFBS_sens
3R	20424572	3R_20424572_SNP [dm3] 3R_24598850_SNP [dm6]	A	T	3.272e^-4	0.746	INTRON mld
2L	2461095	2L_2461095_SNP [dm3] 2L_2461095_SNP [dm6]	G	C	3.274e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
2L	600104	2L_600104_SNP [dm3] 2L_600104_SNP [dm6]	G	C	3.277e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17693061	2L_17693061_SNP [dm3] 2L_17693061_SNP [dm6]	A	G	3.280e^-4	0.746	INTRON CadN	TF binding site mE1_TFBS_inv
2R	3681214	2R_3681214_SNP [dm3] 2R_7793709_SNP [dm6]	G	C	3.287e^-4	0.746	NON_SYNONYMOUS_CODING mus205 UPSTREAM Gapdh1	TF binding site mE1_TFBS_HSA
3L	10594581	3L_10594581_SNP [dm3] 3L_10601481_SNP [dm6]	A	T	3.287e^-4	0.746	INTERGENIC
3L	2265951	3L_2265951_SNP [dm3] 3L_2265951_SNP [dm6]	G	T	3.290e^-4	0.746	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	19670477	3R_19670477_SNP [dm3] 3R_23844755_SNP [dm6]	A	G	3.293e^-4	0.746	INTRON CG34355	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
3R	22443152	3R_22443152_SNP [dm3] 3R_26617430_SNP [dm6]	T	C	3.296e^-4	0.746	INTERGENIC
X	19015303	X_19015303_SNP [dm3] X_19121270_SNP [dm6]	G	A	3.299e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14355550	3L_14355550_SNP [dm3] 3L_14362450_SNP [dm6]	G	A	3.302e^-4	0.746	INTRON fz
3R	10244139	3R_10244139_SNP [dm3] 3R_14418417_SNP [dm6]	A	C	3.304e^-4	0.746	UPSTREAM natalisin INTRON cv-c
3R	15245868	3R_15245868_SNP [dm3] 3R_19420146_SNP [dm6]	A	G	3.305e^-4	0.746	INTRON CG31221
2R	15543403	2R_15543403_SNP [dm3] 2R_19655898_SNP [dm6]	G	A	3.308e^-4	0.746	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	18273059	2L_18273059_SNP [dm3] 2L_18273059_SNP [dm6]	C	G	3.308e^-4	0.746	INTRON CG42750
3R	5082803	3R_5082803_SNP [dm3] 3R_9257081_SNP [dm6]	T	C	3.310e^-4	0.746	NON_SYNONYMOUS_CODING CG16736 DOWNSTREAM CG9740 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	18920849	2L_18920849_SNP [dm3] 2L_18920849_SNP [dm6]	C	G	3.311e^-4	0.746	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14527788	2R_14527788_SNP [dm3] 2R_18640283_SNP [dm6]	T	C	3.315e^-4	0.746	UPSTREAM tRNA:G3:55E DOWNSTREAM tRNA:CR30227 & 1 other INTRON CheA56a
X	14072073	X_14072073_SNP [dm3] X_14178040_SNP [dm6]	G	T	3.319e^-4	0.746	UTR_3_PRIME CG11581 DOWNSTREAM CG11581
2L	9264043	2L_9264043_SNP [dm3] 2L_9264043_SNP [dm6]	C	G	3.324e^-4	0.746	INTRON Ggamma30A	TF binding site mE1_TFBS_inv
3R	11898155	3R_11898155_SNP [dm3] 3R_16072433_SNP [dm6]	C	T	3.325e^-4	0.746	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19889368	3L_19889368_SNP [dm3] 3L_19896268_SNP [dm6]	A	T	3.326e^-4	0.746	INTRON Mi-2 & 1 other EXON CR32218	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11897665	3R_11897665_SNP [dm3] 3R_16071943_SNP [dm6]	A	C	3.327e^-4	0.746	UTR_5_PRIME Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9225310	2L_9225310_SNP [dm3] 2L_9225310_SNP [dm6]	G	T	3.330e^-4	0.746	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7573391	2L_7573391_SNP [dm3] 2L_7573391_SNP [dm6]	A	G	3.334e^-4	0.746	INTRON RapGAP1
2R	17927591	2R_17927591_SNP [dm3] 2R_22040086_SNP [dm6]	T	G	3.336e^-4	0.746	UPSTREAM CG34370 INTERGENIC
2L	20297293	2L_20297293_SNP [dm3] 2L_20297293_SNP [dm6]	C	T	3.339e^-4	0.746	EXON CR43414
3L	10115235	3L_10115235_DEL [dm3] 3L_10122135_DEL [dm6]	CAACAAC	C	3.341e^-4	0.746	INTRON dpr6
3L	18247265	3L_18247265_SNP [dm3] 3L_18254165_SNP [dm6]	A	C	3.345e^-4	0.746	INTERGENIC
3L	16721340	3L_16721340_DEL [dm3] 3L_16728240_DEL [dm6]	AA	A	3.346e^-4	0.746	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	7669626	2R_7669626_SNP [dm3] 2R_11782121_SNP [dm6]	C	T	3.350e^-4	0.746	INTRON ths
3R	19300711	3R_19300711_SNP [dm3] 3R_23474989_SNP [dm6]	A	C	3.351e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	14173732	3R_14173732_SNP [dm3] 3R_18348010_SNP [dm6]	C	T	3.352e^-4	0.746	INTRON CG15803
X	12272594	X_12272594_SNP [dm3] X_12378561_SNP [dm6]	C	A	3.353e^-4	0.746	UPSTREAM Ir11a INTERGENIC
3R	14549947	3R_14549947_SNP [dm3] 3R_18724225_SNP [dm6]	C	T	3.366e^-4	0.746	INTRON Cha
3L	7693346	3L_7693346_SNP [dm3] 3L_7700246_SNP [dm6]	T	C	3.367e^-4	0.746	SYNONYMOUS_CODING Ank2 INTRON CG32373
2L	12756632	2L_12756632_SNP [dm3] 2L_12756632_SNP [dm6]	A	G	3.368e^-4	0.746	INTERGENIC
3R	4966126	3R_4966126_SNP [dm3] 3R_9140404_SNP [dm6]	C	T	3.372e^-4	0.746	INTRON pum
2L	17310353	2L_17310353_INS [dm3] 2L_17310353_INS [dm6]	T	TGTGACATA	3.377e^-4	0.746	INTERGENIC
3R	9683118	3R_9683118_SNP [dm3] 3R_13857396_SNP [dm6]	G	T	3.378e^-4	0.746	INTERGENIC
2L	12416349	2L_12416349_SNP [dm3] 2L_12416349_SNP [dm6]	C	A	3.380e^-4	0.746	INTRON vir-1
2L	2461701	2L_2461701_SNP [dm3] 2L_2461701_SNP [dm6]	A	C	3.380e^-4	0.746	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	27397851	3R_27397851_SNP [dm3] 3R_31572129_SNP [dm6]	T	C	3.382e^-4	0.746	UPSTREAM gammaCOP INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	19579460	3R_19579460_SNP [dm3] 3R_23753738_SNP [dm6]	C	A	3.383e^-4	0.746	UPSTREAM RanBP3 DOWNSTREAM Hrd3 INTRON Rpt5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1863849	3L_1863849_SNP [dm3] 3L_1863849_SNP [dm6]	G	A	3.389e^-4	0.746	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17426515	X_17426515_SNP [dm3] X_17532482_SNP [dm6]	T	A	3.392e^-4	0.746	INTRON CG43658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	20284028	2L_20284028_SNP [dm3] 2L_20284028_SNP [dm6]	G	A	3.394e^-4	0.746	INTERGENIC
2L	11303080	2L_11303080_SNP [dm3] 2L_11303080_SNP [dm6]	C	T	3.395e^-4	0.746	INTERGENIC
2L	1688920	2L_1688920_SNP [dm3] 2L_1688920_SNP [dm6]	T	C	3.403e^-4	0.746	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4487265	2L_4487265_SNP [dm3] 2L_4487265_SNP [dm6]	A	T	3.407e^-4	0.746	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12043748	3R_12043748_SNP [dm3] 3R_16218026_SNP [dm6]	C	A	3.413e^-4	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	4167850	X_4167850_SNP [dm3] X_4273817_SNP [dm6]	T	G	3.425e^-4	0.746	INTERGENIC
3R	16165786	3R_16165786_SNP [dm3] 3R_20340064_SNP [dm6]	T	C	3.426e^-4	0.746	INTRON Ir92a
3L	8082742	3L_8082742_SNP [dm3] 3L_8089642_SNP [dm6]	A	T	3.426e^-4	0.746	INTRON Ect4 & 1 other	TF binding site mE1_TFBS_cad
2L	12547620	2L_12547620_SNP [dm3] 2L_12547620_SNP [dm6]	A	G	3.428e^-4	0.746	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14296091	2R_14296091_MNP [dm3] 2R_18408586_MNP [dm6]	ATT	CAC	3.429e^-4	0.746	UTR_3_PRIME GstE8 UPSTREAM GstE9 DOWNSTREAM GstE7
3L	17523190	3L_17523190_SNP [dm3] 3L_17530090_SNP [dm6]	G	A	3.433e^-4	0.746	UTR_5_PRIME Nedd4 UPSTREAM Edc3 EXON CR45165	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9822558	3R_9822558_SNP [dm3] 3R_13996836_SNP [dm6]	G	T	3.436e^-4	0.746	INTRON rdx
2R	13689870	2R_13689870_SNP [dm3] 2R_17802365_SNP [dm6]	G	A	3.441e^-4	0.746	UTR_5_PRIME grh UPSTREAM CR45270 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	8389566	3L_8389566_SNP [dm3] 3L_8396466_SNP [dm6]	C	T	3.444e^-4	0.746	INTRON CG7120	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20087347	3L_20087347_SNP [dm3] 3L_20094247_SNP [dm6]	T	C	3.446e^-4	0.746	INTERGENIC
2R	8685546	2R_8685546_SNP [dm3] 2R_12798041_SNP [dm6]	A	G	3.447e^-4	0.746	INTRON sca EXON CR45137
2R	9712358	2R_9712358_SNP [dm3] 2R_13824853_SNP [dm6]	A	C	3.454e^-4	0.746	UPSTREAM CG13339 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18459079	2R_18459079_INS [dm3] 2R_22571574_INS [dm6]	T	TAAT	3.465e^-4	0.746	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7295198	3L_7295198_SNP [dm3] 3L_7302098_SNP [dm6]	T	C	3.471e^-4	0.746	INTRON unc-13-4A
2R	19352739	2R_19352739_SNP [dm3] 2R_23465216_SNP [dm6]	A	T	3.473e^-4	0.746	INTRON CG43795
2L	4210896	2L_4210896_SNP [dm3] 2L_4210896_SNP [dm6]	C	A	3.478e^-4	0.746	INTRON ft
X	19780004	X_19780004_SNP [dm3] X_19885971_SNP [dm6]	A	T	3.478e^-4	0.746	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl
2R	14290170	2R_14290170_SNP [dm3] 2R_18402665_SNP [dm6]	G	C	3.484e^-4	0.746	UPSTREAM GstE4 DOWNSTREAM CR43687 EXON CR43688	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15152946	2R_15152946_SNP [dm3] 2R_19265441_SNP [dm6]	G	C	3.484e^-4	0.746	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	3904417	3R_3904417_INS [dm3] 3R_8078695_INS [dm6]	G	GT	3.484e^-4	0.746	INTRON mAChR-B
2R	7725095	2R_7725095_SNP [dm3] 2R_11837590_SNP [dm6]	C	T	3.489e^-4	0.746	INTRON Sobp
3L	8029471	3L_8029471_SNP [dm3] 3L_8036371_SNP [dm6]	T	C	3.490e^-4	0.746	INTRON nmo	TF binding site BDTNP1_TFBS_twi
2R	1220321	2R_1220321_SNP [dm3] 2R_5332816_SNP [dm6]	G	A	3.493e^-4	0.746	INTERGENIC	transposable element FlyBase
3L	10096000	3L_10096000_SNP [dm3] 3L_10102900_SNP [dm6]	C	T	3.496e^-4	0.746	INTRON dpr6
X	3629409	X_3629409_SNP [dm3] X_3735376_SNP [dm6]	A	T	3.499e^-4	0.746	INTRON tlk	TF binding site mE1_TFBS_HSA
X	17387189	X_17387189_SNP [dm3] X_17493156_SNP [dm6]	A	G	3.506e^-4	0.746	INTRON CG43658
3L	16707285	3L_16707285_SNP [dm3] 3L_16714185_SNP [dm6]	C	T	3.508e^-4	0.746	UTR_5_PRIME Dab INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
X	19511236	X_19511236_SNP [dm3] X_19617203_SNP [dm6]	A	T	3.508e^-4	0.746	NON_SYNONYMOUS_CODING CG12788 UTR_3_PRIME Tim9b DOWNSTREAM CG14210	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	8710064	X_8710064_SNP [dm3] X_8816031_SNP [dm6]	T	A	3.511e^-4	0.746	INTERGENIC
2R	7333311	2R_7333311_SNP [dm3] 2R_11445806_SNP [dm6]	G	A	3.515e^-4	0.746	INTRON qvr
X	11184998	X_11184998_INS [dm3] X_11290965_INS [dm6]	A	ACATA	3.521e^-4	0.746	INTRON CG44422
2L	7967772	2L_7967772_SNP [dm3] 2L_7967772_SNP [dm6]	T	A	3.529e^-4	0.747	INTRON Snoo
2L	9366104	2L_9366104_SNP [dm3] 2L_9366104_SNP [dm6]	A	G	3.536e^-4	0.747	INTERGENIC
3R	26106216	3R_26106216_SNP [dm3] 3R_30280494_SNP [dm6]	T	A	3.543e^-4	0.747	INTRON hdc
2L	3441478	2L_3441478_SNP [dm3] 2L_3441478_SNP [dm6]	T	A	3.553e^-4	0.747	INTERGENIC
2R	2458610	2R_2458610_SNP [dm3] 2R_6571105_SNP [dm6]	A	C	3.559e^-4	0.747	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13385678	2R_13385678_SNP [dm3] 2R_17498173_SNP [dm6]	G	A	3.561e^-4	0.747	INTERGENIC
3L	13427241	3L_13427241_SNP [dm3] 3L_13434141_SNP [dm6]	A	C	3.566e^-4	0.747	UPSTREAM tRNA:V4:70BCa INTRON CG10713	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7224373	2L_7224373_SNP [dm3] 2L_7224373_SNP [dm6]	C	A	3.570e^-4	0.747	UTR_3_PRIME Ndae1 INTRON Ndae1
3R	13970249	3R_13970249_SNP [dm3] 3R_18144527_SNP [dm6]	C	G	3.573e^-4	0.747	INTERGENIC
2R	5102659	2R_5102659_SNP [dm3] 2R_9215154_SNP [dm6]	A	G	3.573e^-4	0.747	DOWNSTREAM CR44451 INTERGENIC
3L	20088124	3L_20088124_SNP [dm3] 3L_20095024_SNP [dm6]	C	A	3.575e^-4	0.747	INTERGENIC
2L	6965040	2L_6965040_SNP [dm3] 2L_6965040_SNP [dm6]	G	T	3.576e^-4	0.747	SYNONYMOUS_CODING Coprox UPSTREAM sip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8094060	X_8094060_SNP [dm3] X_8200027_SNP [dm6]	C	A	3.579e^-4	0.747	INTRON sdt
2L	520004	2L_520004_SNP [dm3] 2L_520004_SNP [dm6]	T	C	3.581e^-4	0.747	INTRON ush	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16508508	3L_16508508_SNP [dm3] 3L_16515408_SNP [dm6]	A	C	3.598e^-4	0.748	INTRON CG43373
2L	3943801	2L_3943801_SNP [dm3] 2L_3943801_SNP [dm6]	T	A	3.599e^-4	0.748	INTRON fred
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	3.600e^-4	0.748	EXON CR43304
2L	16037031	2L_16037031_SNP [dm3] 2L_16037031_SNP [dm6]	T	G	3.610e^-4	0.748	INTRON beat-Ic	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21007903	3R_21007903_DEL [dm3] 3R_25182181_DEL [dm6]	GT	G	3.616e^-4	0.748	INTRON lobo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7246475	3L_7246475_SNP [dm3] 3L_7253375_SNP [dm6]	A	G	3.619e^-4	0.748	DOWNSTREAM CR43470 INTRON CG14830
3R	19558544	3R_19558544_SNP [dm3] 3R_23732822_SNP [dm6]	C	T	3.620e^-4	0.748	SYNONYMOUS_CODING Rpn9 UPSTREAM Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6916661	2L_6916661_SNP [dm3] 2L_6916661_SNP [dm6]	T	C	3.621e^-4	0.748	UPSTREAM CG32829 DOWNSTREAM nop5 & 1 other INTRON x16
2R	14292991	2R_14292991_SNP [dm3] 2R_18405486_SNP [dm6]	C	T	3.626e^-4	0.748	UPSTREAM GstE6 DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	3077078	2R_3077078_SNP [dm3] 2R_7189573_SNP [dm6]	A	C	3.631e^-4	0.748	INTRON pk
3R	26106746	3R_26106746_SNP [dm3] 3R_30281024_SNP [dm6]	T	C	3.634e^-4	0.748	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17658902	X_17658902_SNP [dm3] X_17764869_SNP [dm6]	A	G	3.637e^-4	0.748	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12835494	X_12835494_SNP [dm3] X_12941461_SNP [dm6]	C	A	3.638e^-4	0.748	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2L	10293562	2L_10293562_SNP [dm3] 2L_10293562_SNP [dm6]	A	T	3.644e^-4	0.748	INTRON Hand	regulatory region REDfly_CRMs
3R	12079245	3R_12079245_SNP [dm3] 3R_16253523_SNP [dm6]	G	T	3.650e^-4	0.748	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6376998	2R_6376998_SNP [dm3] 2R_10489493_SNP [dm6]	C	A	3.658e^-4	0.748	DOWNSTREAM lola INTRON lola	TF binding site mE1_TFBS_sens
3R	14918632	3R_14918632_SNP [dm3] 3R_19092910_SNP [dm6]	T	A	3.668e^-4	0.748	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15015286	3R_15015286_INS [dm3] 3R_19189564_INS [dm6]	G	GAGG	3.676e^-4	0.748	UTR_5_PRIME CG31475	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17292240	2R_17292240_SNP [dm3] 2R_21404735_SNP [dm6]	T	G	3.684e^-4	0.748	INTRON Sdc
2L	9324232	2L_9324232_SNP [dm3] 2L_9324232_SNP [dm6]	C	G	3.687e^-4	0.748	INTERGENIC
2R	11806050	2R_11806050_SNP [dm3] 2R_15918545_SNP [dm6]	T	C	3.693e^-4	0.748	INTRON sli	TF binding site mE1_TFBS_cad
2L	17903456	2L_17903456_SNP [dm3] 2L_17903456_SNP [dm6]	A	T	3.701e^-4	0.748	UPSTREAM CR45332 & 1 other INTERGENIC
3L	14206839	3L_14206839_SNP [dm3] 3L_14213739_SNP [dm6]	A	C	3.703e^-4	0.748	INTRON nuf
2L	15748981	2L_15748981_SNP [dm3] 2L_15748981_SNP [dm6]	G	T	3.707e^-4	0.748	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2R	18051978	2R_18051978_SNP [dm3] 2R_22164473_SNP [dm6]	G	C	3.710e^-4	0.748	NON_SYNONYMOUS_CODING CG34206 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5045032	3R_5045032_SNP [dm3] 3R_9219310_SNP [dm6]	T	G	3.713e^-4	0.748	INTRON pum
2R	19217161	2R_19217161_SNP [dm3] 2R_23329638_SNP [dm6]	G	T	3.713e^-4	0.748	UTR_3_PRIME CG30413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19106767	2L_19106767_DEL [dm3] 2L_19106767_DEL [dm6]	GAATATTTGATAGCAAATAT...	G	3.717e^-4	0.748	UPSTREAM Lim3 INTRON Lim3
3R	19584198	3R_19584198_SNP [dm3] 3R_23758476_SNP [dm6]	T	A	3.723e^-4	0.748	START_GAINED Hrd3 UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	14918631	3R_14918631_SNP [dm3] 3R_19092909_SNP [dm6]	A	G	3.729e^-4	0.748	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15587286	2R_15587286_SNP [dm3] 2R_19699781_SNP [dm6]	G	A	3.733e^-4	0.748	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
3R	16990498	3R_16990498_SNP [dm3] 3R_21164776_SNP [dm6]	C	A	3.743e^-4	0.748	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma
2L	1065226	2L_1065226_SNP [dm3] 2L_1065226_SNP [dm6]	T	A	3.745e^-4	0.748	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3213546	2L_3213546_DEL [dm3] 2L_3213546_DEL [dm6]	TACG	GC	3.745e^-4	0.748	INTERGENIC
2L	16505432	2L_16505432_INS [dm3] 2L_16505432_INS [dm6]	C	CCC	3.753e^-4	0.748	INTRON Tpr2	TF binding site mE1_TFBS_cad
3R	13102848	3R_13102848_SNP [dm3] 3R_17277126_SNP [dm6]	C	A	3.755e^-4	0.748	INTERGENIC
X	4839209	X_4839209_SNP [dm3] X_4945176_SNP [dm6]	G	A	3.762e^-4	0.748	INTRON Ptp4E
2R	2934381	2R_2934381_SNP [dm3] 2R_7046876_SNP [dm6]	T	A	3.763e^-4	0.748	INTRON Tsp42El	transposable element FlyBase
2L	12528017	2L_12528017_SNP [dm3] 2L_12528017_SNP [dm6]	C	A	3.764e^-4	0.748	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	3726039	3L_3726039_SNP [dm3] 3L_3726039_SNP [dm6]	C	T	3.771e^-4	0.748	INTRON CG32264
2L	8166131	2L_8166131_DEL [dm3] 2L_8166131_DEL [dm6]	TT	T	3.774e^-4	0.748	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3758012	2L_3758012_SNP [dm3] 2L_3758012_SNP [dm6]	G	A	3.779e^-4	0.748	INTRON CG43707
2L	8538335	2L_8538335_SNP [dm3] 2L_8538335_SNP [dm6]	G	C	3.794e^-4	0.748	DOWNSTREAM CG17834 INTRON CG17834
3R	23033241	3R_23033241_SNP [dm3] 3R_27207519_SNP [dm6]	A	T	3.795e^-4	0.748	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	20971755	3R_20971755_SNP [dm3] 3R_25146033_SNP [dm6]	G	T	3.798e^-4	0.748	INTERGENIC
2L	13935195	2L_13935195_SNP [dm3] 2L_13935195_SNP [dm6]	A	C	3.803e^-4	0.748	UPSTREAM CG16885 INTRON Ance-3
2L	4009341	2L_4009341_SNP [dm3] 2L_4009341_SNP [dm6]	G	T	3.805e^-4	0.748	DOWNSTREAM CG43774 INTERGENIC
3R	16813044	3R_16813044_SNP [dm3] 3R_20987322_SNP [dm6]	T	A	3.805e^-4	0.748	INTRON Calx & 1 other
3L	7822733	3L_7822733_SNP [dm3] 3L_7829633_SNP [dm6]	C	G	3.809e^-4	0.748	INTRON Pdp1
X	22225879	X_22225879_SNP [dm3] X_22824043_SNP [dm6]	G	A	3.815e^-4	0.748	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
2L	20559655	2L_20559655_SNP [dm3] 2L_20559655_SNP [dm6]	T	C	3.816e^-4	0.748	INTERGENIC
3L	9417794	3L_9417794_SNP [dm3] 3L_9424694_SNP [dm6]	T	C	3.819e^-4	0.748	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17285321	3R_17285321_SNP [dm3] 3R_21459599_SNP [dm6]	A	G	3.824e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	8945278	2L_8945278_SNP [dm3] 2L_8945278_SNP [dm6]	A	C	3.829e^-4	0.748	INTRON C1GalTA	TF binding site mE1_TFBS_cad
3R	14760046	3R_14760046_SNP [dm3] 3R_18934324_SNP [dm6]	A	T	3.836e^-4	0.748	INTRON CG42613
2L	6972765	2L_6972765_SNP [dm3] 2L_6972765_SNP [dm6]	G	A	3.841e^-4	0.748	DOWNSTREAM uif EXON CR43142
2L	18270833	2L_18270833_SNP [dm3] 2L_18270833_SNP [dm6]	G	A	3.844e^-4	0.748	INTRON CG42750
2R	14821505	2R_14821505_SNP [dm3] 2R_18934000_SNP [dm6]	C	T	3.847e^-4	0.748	INTRON sano
2R	9657939	2R_9657939_SNP [dm3] 2R_13770434_SNP [dm6]	T	A	3.849e^-4	0.748	INTRON Cpr50Ca
X	4701561	X_4701561_SNP [dm3] X_4807528_SNP [dm6]	G	A	3.853e^-4	0.748	INTERGENIC
2L	17406695	2L_17406695_SNP [dm3] 2L_17406695_SNP [dm6]	T	G	3.854e^-4	0.748	SYNONYMOUS_CODING CLIP-190
3L	10412364	3L_10412364_SNP [dm3] 3L_10419264_SNP [dm6]	C	A	3.858e^-4	0.748	INTERGENIC
3L	13181477	3L_13181477_DEL [dm3] 3L_13188377_DEL [dm6]	TGCCTAAAAATTCGAGCTTA...	T	3.860e^-4	0.748	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4709377	2L_4709377_SNP [dm3] 2L_4709377_SNP [dm6]	C	A	3.861e^-4	0.748	INTRON CG34351	TF binding site mE1_TFBS_chinmo
3R	17339970	3R_17339970_SNP [dm3] 3R_21514248_SNP [dm6]	C	T	3.862e^-4	0.748	INTERGENIC
2L	17693063	2L_17693063_SNP [dm3] 2L_17693063_SNP [dm6]	T	A	3.865e^-4	0.748	INTRON CadN	TF binding site mE1_TFBS_inv
2R	2073642	2R_2073642_SNP [dm3] 2R_6186137_SNP [dm6]	C	T	3.871e^-4	0.748	INTRON Ptr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8035215	2L_8035215_SNP [dm3] 2L_8035215_SNP [dm6]	A	G	3.873e^-4	0.748	INTRON CG7367 & 1 other
2R	17691353	2R_17691353_DEL [dm3] 2R_21803848_DEL [dm6]	GAAATCGCGTTGCTCTAAAA...	G	3.876e^-4	0.748	EXON CR9284
2R	9668794	2R_9668794_SNP [dm3] 2R_13781289_SNP [dm6]	T	A	3.876e^-4	0.748	INTRON Cpr50Ca
3L	4027268	3L_4027268_SNP [dm3] 3L_4027268_SNP [dm6]	C	T	3.878e^-4	0.748	SPLICE_SITE_REGION Gr64a INTRON Gr64a
3R	22271440	3R_22271440_INS [dm3] 3R_26445718_INS [dm6]	C	CGGC	3.881e^-4	0.748	INTRON tx
X	17125931	X_17125931_DEL [dm3] X_17231898_DEL [dm6]	CTTG	C	3.882e^-4	0.748	UPSTREAM CG10597 INTERGENIC	transposable element FlyBase
X	14246155	X_14246155_SNP [dm3] X_14352122_SNP [dm6]	T	C	3.886e^-4	0.748	INTRON dpr8
3R	23112002	3R_23112002_SNP [dm3] 3R_27286280_SNP [dm6]	C	G	3.888e^-4	0.748	NON_SYNONYMOUS_CODING CG3368
2R	5102671	2R_5102671_SNP [dm3] 2R_9215166_SNP [dm6]	T	A	3.889e^-4	0.748	DOWNSTREAM CR44451 INTERGENIC
2R	14683276	2R_14683276_SNP [dm3] 2R_18795771_SNP [dm6]	A	C	3.897e^-4	0.748	SYNONYMOUS_CODING MFS15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19257427	X_19257427_SNP [dm3] X_19363394_SNP [dm6]	G	A	3.898e^-4	0.748	INTRON kek5	TF binding site BDTNP1_TFBS_dl
3R	10637601	3R_10637601_SNP [dm3] 3R_14811879_SNP [dm6]	A	G	3.902e^-4	0.748	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
2L	12547190	2L_12547190_SNP [dm3] 2L_12547190_SNP [dm6]	T	C	3.903e^-4	0.748	UPSTREAM bun INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	19185865	3R_19185865_SNP [dm3] 3R_23360143_SNP [dm6]	C	T	3.912e^-4	0.748	UTR_3_PRIME RpS3 DOWNSTREAM RpS3	TF binding site BDTNP1_TFBS_twi
3R	19626655	3R_19626655_SNP [dm3] 3R_23800933_SNP [dm6]	C	T	3.925e^-4	0.748	UTR_3_PRIME mbc DOWNSTREAM CG33111	TF binding site mE1_TFBS_HSA
3R	18361137	3R_18361137_SNP [dm3] 3R_22535415_SNP [dm6]	T	A	3.932e^-4	0.748	INTRON CG5326
3L	14235314	3L_14235314_SNP [dm3] 3L_14242214_SNP [dm6]	A	G	3.934e^-4	0.748	INTERGENIC
2R	2048079	2R_2048079_SNP [dm3] 2R_6160574_SNP [dm6]	T	A	3.934e^-4	0.748	UPSTREAM tRNA:R2:42Ac DOWNSTREAM CR43904 INTRON EcR	TF binding site mE1_TFBS_HSA
2R	11217709	2R_11217709_SNP [dm3] 2R_15330204_SNP [dm6]	G	A	3.939e^-4	0.748	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9791132	3L_9791132_SNP [dm3] 3L_9798032_SNP [dm6]	C	T	3.942e^-4	0.748	UPSTREAM Ilp1 & 1 other INTERGENIC
2R	10342664	2R_10342664_SNP [dm3] 2R_14455159_SNP [dm6]	G	A	3.946e^-4	0.748	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15082571	3L_15082571_SNP [dm3] 3L_15089471_SNP [dm6]	C	T	3.948e^-4	0.748	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl
2L	1085719	2L_1085719_SNP [dm3] 2L_1085719_SNP [dm6]	G	C	3.953e^-4	0.748	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	9041644	2R_9041644_SNP [dm3] 2R_13154139_SNP [dm6]	C	T	3.954e^-4	0.748	SYNONYMOUS_CODING TppII
3R	9927409	3R_9927409_SNP [dm3] 3R_14101687_SNP [dm6]	A	T	3.956e^-4	0.748	INTRON PK1-R
3R	18529176	3R_18529176_SNP [dm3] 3R_22703454_SNP [dm6]	C	T	3.958e^-4	0.748	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8698679	2R_8698679_SNP [dm3] 2R_12811174_SNP [dm6]	A	G	3.960e^-4	0.748	INTERGENIC
2L	13975028	2L_13975028_SNP [dm3] 2L_13975028_SNP [dm6]	A	G	3.966e^-4	0.748	SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo
3R	3313029	3R_3313029_SNP [dm3] 3R_7487307_SNP [dm6]	G	A	3.984e^-4	0.751	SYNONYMOUS_CODING alpha-Est10
3L	14051810	3L_14051810_SNP [dm3] 3L_14058710_SNP [dm6]	C	A	3.990e^-4	0.751	INTRON CG32138
3L	2001824	3L_2001824_SNP [dm3] 3L_2001824_SNP [dm6]	A	G	4.005e^-4	0.752	INTERGENIC
2L	19103032	2L_19103032_SNP [dm3] 2L_19103032_SNP [dm6]	A	G	4.017e^-4	0.752	DOWNSTREAM CG17344 & 1 other INTRON Lim3	TF binding site mE1_TFBS_cad
2L	18271219	2L_18271219_SNP [dm3] 2L_18271219_SNP [dm6]	G	A	4.019e^-4	0.752	UTR_5_PRIME CG42750
3L	18291661	3L_18291661_INS [dm3] 3L_18298561_INS [dm6]	A	AA	4.021e^-4	0.752	DOWNSTREAM CG13700 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.681e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.024571
In_3R_K	0.001155
In_3R_Mo	0.069026

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	8.5714	0.0138
In_3R_K	8.3352	0.0155
In_3R_Mo	6.2072	0.0449

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2209 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6610686	3L_6610686_SNP [dm3] 3L_6617586_SNP [dm6]	G	T	3.647e^-7	0.498	INTRON CG8398
X	6513837	X_6513837_SNP [dm3] X_6619804_SNP [dm6]	G	C	8.494e^-7	0.498	INTRON pigs
2L	16620673	2L_16620673_SNP [dm3] 2L_16620673_SNP [dm6]	G	T	1.302e^-6	0.498	INTRON CG42389
X	17933478	X_17933478_SNP [dm3] X_18039445_SNP [dm6]	T	G	1.840e^-6	0.498	UTR_5_PRIME Sh
2L	16620567	2L_16620567_SNP [dm3] 2L_16620567_SNP [dm6]	A	G	2.091e^-6	0.498	INTRON CG42389
2R	5357791	2R_5357791_SNP [dm3] 2R_9470286_SNP [dm6]	G	A	2.477e^-6	0.498	INTRON Camta
X	12295572	X_12295572_SNP [dm3] X_12401539_SNP [dm6]	T	C	3.074e^-6	0.498	INTERGENIC
3L	9791124	3L_9791124_SNP [dm3] 3L_9798024_SNP [dm6]	G	A	3.490e^-6	0.498	UPSTREAM Ilp1 & 1 other INTERGENIC
2L	16620588	2L_16620588_SNP [dm3] 2L_16620588_SNP [dm6]	C	T	3.846e^-6	0.498	INTRON CG42389
X	17625919	X_17625919_SNP [dm3] X_17731886_SNP [dm6]	G	A	3.944e^-6	0.498	INTRON CG42684
3R	14173543	3R_14173543_SNP [dm3] 3R_18347821_SNP [dm6]	T	A	3.984e^-6	0.498	INTRON CG15803
2L	16581122	2L_16581122_SNP [dm3] 2L_16581122_SNP [dm6]	T	G	4.152e^-6	0.498	INTRON CG42389
3L	9791112	3L_9791112_SNP [dm3] 3L_9798012_SNP [dm6]	C	T	4.164e^-6	0.498	UPSTREAM Ilp1 & 1 other INTERGENIC
3R	26106746	3R_26106746_SNP [dm3] 3R_30281024_SNP [dm6]	T	C	4.256e^-6	0.498	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11766803	2R_11766803_SNP [dm3] 2R_15879298_SNP [dm6]	A	T	4.317e^-6	0.498	INTRON sli
3L	2123236	3L_2123236_SNP [dm3] 3L_2123236_SNP [dm6]	G	T	4.461e^-6	0.498	INTRON zormin
3R	1890479	3R_1890479_INS [dm3] 3R_6064757_INS [dm6]	A	AT	4.788e^-6	0.498	INTERGENIC
3L	9791116	3L_9791116_SNP [dm3] 3L_9798016_SNP [dm6]	A	T	4.922e^-6	0.498	UPSTREAM Ilp1 & 1 other INTERGENIC
3R	14173584	3R_14173584_SNP [dm3] 3R_18347862_SNP [dm6]	A	T	5.041e^-6	0.498	INTRON CG15803
X	17625840	X_17625840_INS [dm3] X_17731807_INS [dm6]	T	TATAATATATTATAATATAT...	5.524e^-6	0.518	INTRON CG42684
3L	9791142	3L_9791142_SNP [dm3] 3L_9798042_SNP [dm6]	T	C	6.167e^-6	0.527	UPSTREAM Ilp1 & 1 other INTERGENIC
3L	9791132	3L_9791132_SNP [dm3] 3L_9798032_SNP [dm6]	C	T	6.185e^-6	0.527	UPSTREAM Ilp1 & 1 other INTERGENIC
X	6513855	X_6513855_SNP [dm3] X_6619822_SNP [dm6]	G	A	7.573e^-6	0.618	INTRON pigs
2L	17400969	2L_17400969_SNP [dm3] 2L_17400969_SNP [dm6]	G	A	7.909e^-6	0.618	SYNONYMOUS_CODING CLIP-190	TF binding site mE1_TFBS_HSA
2R	9655986	2R_9655986_SNP [dm3] 2R_13768481_SNP [dm6]	G	A	8.850e^-6	0.639	INTERGENIC
3L	2002034	3L_2002034_SNP [dm3] 3L_2002034_SNP [dm6]	A	G	9.111e^-6	0.639	INTERGENIC
3L	9791120	3L_9791120_SNP [dm3] 3L_9798020_SNP [dm6]	A	G	9.393e^-6	0.639	UPSTREAM Ilp1 & 1 other INTERGENIC
3L	13052088	3L_13052088_DEL [dm3] 3L_13058988_DEL [dm6]	ACAAA	A	9.535e^-6	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4294765	2L_4294765_SNP [dm3] 2L_4294765_SNP [dm6]	G	A	1.054e^-5	0.643	INTRON tutl	TF binding site mE1_TFBS_chinmo
2L	9182925	2L_9182925_SNP [dm3] 2L_9182925_SNP [dm6]	T	C	1.077e^-5	0.643	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17268953	X_17268953_SNP [dm3] X_17374920_SNP [dm6]	C	T	1.092e^-5	0.643	INTERGENIC
3L	15918281	3L_15918281_SNP [dm3] 3L_15925181_SNP [dm6]	A	C	1.097e^-5	0.643	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14173589	3R_14173589_SNP [dm3] 3R_18347867_SNP [dm6]	T	C	1.163e^-5	0.643	INTRON CG15803
X	17268932	X_17268932_SNP [dm3] X_17374899_SNP [dm6]	C	T	1.165e^-5	0.643	INTERGENIC
3L	3919520	3L_3919520_SNP [dm3] 3L_3919520_SNP [dm6]	C	T	1.242e^-5	0.661	INTRON Eip63F-1
2R	16851692	2R_16851692_SNP [dm3] 2R_20964187_SNP [dm6]	G	A	1.302e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13789143	3R_13789143_SNP [dm3] 3R_17963421_SNP [dm6]	G	A	1.399e^-5	0.661	INTRON cpo
2R	11766821	2R_11766821_SNP [dm3] 2R_15879316_SNP [dm6]	A	T	1.426e^-5	0.661	INTRON sli
3R	26106610	3R_26106610_SNP [dm3] 3R_30280888_SNP [dm6]	C	T	1.486e^-5	0.661	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8425240	3L_8425240_SNP [dm3] 3L_8432140_SNP [dm6]	G	A	1.520e^-5	0.661	UTR_3_PRIME Cbl DOWNSTREAM Unr
X	17625778	X_17625778_SNP [dm3] X_17731745_SNP [dm6]	G	T	1.526e^-5	0.661	INTRON CG42684
3L	16731463	3L_16731463_INS [dm3] 3L_16738363_INS [dm6]	T	TC	1.550e^-5	0.661	INTRON CG9701	TF binding site mE1_TFBS_sens
2R	18101144	2R_18101144_INS [dm3] 2R_22213639_INS [dm6]	T	TAT	1.608e^-5	0.661	DOWNSTREAM CG11291 INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9242536	X_9242536_SNP [dm3] X_9348503_SNP [dm6]	C	T	1.612e^-5	0.661	INTRON CG34449
X	17625671	X_17625671_SNP [dm3] X_17731638_SNP [dm6]	A	G	1.615e^-5	0.661	INTRON CG42684
X	17626269	X_17626269_DEL [dm3] X_17732236_DEL [dm6]	AAATTAAA	A	1.658e^-5	0.661	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13427241	3L_13427241_SNP [dm3] 3L_13434141_SNP [dm6]	A	C	1.738e^-5	0.661	UPSTREAM tRNA:V4:70BCa INTRON CG10713	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15070666	3L_15070666_SNP [dm3] 3L_15077566_SNP [dm6]	A	G	1.753e^-5	0.661	NON_SYNONYMOUS_CODING Or71a INTRON cp309
X	19875880	X_19875880_SNP [dm3] X_19981847_SNP [dm6]	T	C	1.757e^-5	0.661	INTERGENIC
2R	16850837	2R_16850837_SNP [dm3] 2R_20963332_SNP [dm6]	T	G	1.761e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26083415	3R_26083415_SNP [dm3] 3R_30257693_SNP [dm6]	C	G	1.862e^-5	0.676	INTERGENIC
2R	11766805	2R_11766805_SNP [dm3] 2R_15879300_SNP [dm6]	C	G	1.919e^-5	0.676	INTRON sli
3L	8079688	3L_8079688_SNP [dm3] 3L_8086588_SNP [dm6]	G	A	1.924e^-5	0.676	INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	1945208	3R_1945208_SNP [dm3] 3R_6119486_SNP [dm6]	T	A	1.947e^-5	0.676	INTERGENIC
3L	13427240	3L_13427240_SNP [dm3] 3L_13434140_SNP [dm6]	G	C	1.985e^-5	0.677	UPSTREAM tRNA:V4:70BCa INTRON CG10713	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17625845	X_17625845_SNP [dm3] X_17731812_SNP [dm6]	G	A	2.090e^-5	0.7	INTRON CG42684
3R	14173629	3R_14173629_SNP [dm3] 3R_18347907_SNP [dm6]	A	T	2.146e^-5	0.706	INTRON CG15803
3L	2265904	3L_2265904_SNP [dm3] 3L_2265904_SNP [dm6]	G	A	2.235e^-5	0.708	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20332580	3R_20332580_SNP [dm3] 3R_24506858_SNP [dm6]	A	T	2.300e^-5	0.708	INTERGENIC
2R	16748251	2R_16748251_SNP [dm3] 2R_20860746_SNP [dm6]	C	A	2.376e^-5	0.708	INTERGENIC
3L	2265951	3L_2265951_SNP [dm3] 3L_2265951_SNP [dm6]	G	T	2.408e^-5	0.708	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	3518882	3L_3518882_SNP [dm3] 3L_3518882_SNP [dm6]	C	T	2.418e^-5	0.708	INTRON Eip63E
X	9242517	X_9242517_SNP [dm3] X_9348484_SNP [dm6]	T	A	2.436e^-5	0.708	INTRON CG34449
3L	18876986	3L_18876986_SNP [dm3] 3L_18883886_SNP [dm6]	T	C	2.607e^-5	0.708	INTRON CG3961
2L	7968714	2L_7968714_SNP [dm3] 2L_7968714_SNP [dm6]	A	T	2.707e^-5	0.708	INTRON Snoo
3L	2266067	3L_2266067_SNP [dm3] 3L_2266067_SNP [dm6]	A	T	2.724e^-5	0.708	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	7245369	X_7245369_SNP [dm3] X_7351336_SNP [dm6]	C	T	2.756e^-5	0.708	INTRON CR44357 & 1 other
3R	19584208	3R_19584208_SNP [dm3] 3R_23758486_SNP [dm6]	T	C	2.767e^-5	0.708	UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	14355550	3L_14355550_SNP [dm3] 3L_14362450_SNP [dm6]	G	A	2.773e^-5	0.708	INTRON fz
3L	14350320	3L_14350320_SNP [dm3] 3L_14357220_SNP [dm6]	A	G	2.861e^-5	0.708	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19216523	2R_19216523_SNP [dm3] 2R_23329000_SNP [dm6]	C	A	2.876e^-5	0.708	DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17034800	2L_17034800_SNP [dm3] 2L_17034800_SNP [dm6]	T	A	2.999e^-5	0.708	INTERGENIC
2L	520004	2L_520004_SNP [dm3] 2L_520004_SNP [dm6]	T	C	3.041e^-5	0.708	INTRON ush	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8547675	2R_8547675_SNP [dm3] 2R_12660170_SNP [dm6]	T	A	3.068e^-5	0.708	UTR_3_PRIME nemy DOWNSTREAM CG8646
3L	3918643	3L_3918643_SNP [dm3] 3L_3918643_SNP [dm6]	A	G	3.078e^-5	0.708	INTRON Eip63F-1
3R	3862288	3R_3862288_SNP [dm3] 3R_8036566_SNP [dm6]	A	T	3.143e^-5	0.708	UTR_3_PRIME unc-45
X	7245395	X_7245395_SNP [dm3] X_7351362_SNP [dm6]	G	A	3.156e^-5	0.708	INTRON CR44357 & 1 other
2L	16056187	2L_16056187_SNP [dm3] 2L_16056187_SNP [dm6]	G	T	3.243e^-5	0.708	INTRON beat-Ia
3L	5824375	3L_5824375_SNP [dm3] 3L_5831275_SNP [dm6]	T	C	3.306e^-5	0.708	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5824379	3L_5824379_INS [dm3] 3L_5831279_INS [dm6]	C	CCT	3.306e^-5	0.708	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2365030	X_2365030_INS [dm3] X_2470997_INS [dm6]	T	TAGTTTT	3.328e^-5	0.708	UTR_3_PRIME trol UPSTREAM boi	TF binding site mE1_TFBS_Trl
3R	21624469	3R_21624469_SNP [dm3] 3R_25798747_SNP [dm6]	T	C	3.334e^-5	0.708	UPSTREAM CR43847 INTERGENIC
X	5605827	X_5605827_SNP [dm3] X_5711794_SNP [dm6]	A	G	3.337e^-5	0.708	SYNONYMOUS_CODING CG33080 UTR_5_PRIME CG33080
2R	3677295	2R_3677295_SNP [dm3] 2R_7789790_SNP [dm6]	C	T	3.361e^-5	0.708	SYNONYMOUS_CODING CG12825 UPSTREAM CG12824 DOWNSTREAM CanB2
2R	14293879	2R_14293879_SNP [dm3] 2R_18406374_SNP [dm6]	C	T	3.379e^-5	0.708	SYNONYMOUS_CODING GstE6 UPSTREAM GstE7	TF binding site mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Trl
3R	22279814	3R_22279814_SNP [dm3] 3R_26454092_SNP [dm6]	G	A	3.386e^-5	0.708	UTR_3_PRIME CG5447 UPSTREAM CG43117
2L	15803532	2L_15803532_SNP [dm3] 2L_15803532_SNP [dm6]	C	T	3.414e^-5	0.708	INTERGENIC
X	17625854	X_17625854_INS [dm3] X_17731821_INS [dm6]	T	TTAT	3.445e^-5	0.708	INTRON CG42684
3L	18874113	3L_18874113_SNP [dm3] 3L_18881013_SNP [dm6]	G	T	3.481e^-5	0.708	INTRON CG3961	TF binding site mE1_TFBS_cad
3R	11568299	3R_11568299_SNP [dm3] 3R_15742577_SNP [dm6]	A	G	3.543e^-5	0.708	INTERGENIC
2L	14438169	2L_14438169_SNP [dm3] 2L_14438169_SNP [dm6]	T	C	3.544e^-5	0.708	INTERGENIC	TF binding site mE1_TFBS_cad
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	3.545e^-5	0.708	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8809439	2R_8809439_SNP [dm3] 2R_12921934_SNP [dm6]	C	A	3.571e^-5	0.708	NON_SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9500123	X_9500123_SNP [dm3] X_9606090_SNP [dm6]	C	T	3.619e^-5	0.708	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
2L	3535788	2L_3535788_SNP [dm3] 2L_3535788_SNP [dm6]	A	T	3.641e^-5	0.708	INTERGENIC
2R	9366154	2R_9366154_DEL [dm3] 2R_13478649_DEL [dm6]	TATACG	T	3.643e^-5	0.708	DOWNSTREAM CG43192 INTRON arr
3L	14015779	3L_14015779_SNP [dm3] 3L_14022679_SNP [dm6]	G	A	3.704e^-5	0.708	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
2L	16056191	2L_16056191_SNP [dm3] 2L_16056191_SNP [dm6]	T	A	3.740e^-5	0.708	INTRON beat-Ia
3R	22487082	3R_22487082_SNP [dm3] 3R_26661360_SNP [dm6]	C	G	3.767e^-5	0.708	INTRON beat-VII
3R	17358439	3R_17358439_SNP [dm3] 3R_21532717_SNP [dm6]	T	C	3.774e^-5	0.708	EXON CR43372
2L	13701191	2L_13701191_SNP [dm3] 2L_13701191_SNP [dm6]	T	C	3.907e^-5	0.717	INTRON CG31814
3R	17339970	3R_17339970_SNP [dm3] 3R_21514248_SNP [dm6]	C	T	3.924e^-5	0.717	INTERGENIC
3R	13970131	3R_13970131_SNP [dm3] 3R_18144409_SNP [dm6]	T	A	3.973e^-5	0.717	INTERGENIC
2R	14821929	2R_14821929_SNP [dm3] 2R_18934424_SNP [dm6]	G	A	4.001e^-5	0.717	INTRON sano
2R	18101027	2R_18101027_SNP [dm3] 2R_22213522_SNP [dm6]	A	G	4.012e^-5	0.717	DOWNSTREAM CG11291 INTRON ari-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6777645	2L_6777645_SNP [dm3] 2L_6777645_SNP [dm6]	C	A	4.066e^-5	0.717	DOWNSTREAM nrv1 INTRON CG17378	TF binding site mE1_TFBS_cad
2L	17140265	2L_17140265_SNP [dm3] 2L_17140265_SNP [dm6]	A	G	4.094e^-5	0.717	INTRON beat-IIIa & 1 other
2L	5036203	2L_5036203_SNP [dm3] 2L_5036203_SNP [dm6]	C	G	4.180e^-5	0.717	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10806318	2L_10806318_SNP [dm3] 2L_10806318_SNP [dm6]	G	C	4.181e^-5	0.717	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
3L	16183436	3L_16183436_SNP [dm3] 3L_16190336_SNP [dm6]	A	C	4.219e^-5	0.717	INTERGENIC
X	4842720	X_4842720_SNP [dm3] X_4948687_SNP [dm6]	A	T	4.241e^-5	0.717	INTRON Ptp4E
2L	19848803	2L_19848803_SNP [dm3] 2L_19848803_SNP [dm6]	G	A	4.331e^-5	0.723	INTRON sick
3L	13216532	3L_13216532_SNP [dm3] 3L_13223432_SNP [dm6]	T	C	4.356e^-5	0.723	INTERGENIC
2L	15771494	2L_15771494_SNP [dm3] 2L_15771494_SNP [dm6]	C	T	4.433e^-5	0.729	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	25463895	3R_25463895_SNP [dm3] 3R_29638173_SNP [dm6]	G	A	4.561e^-5	0.744	INTRON Dop1R2
3R	23112003	3R_23112003_SNP [dm3] 3R_27286281_SNP [dm6]	A	G	4.726e^-5	0.755	NON_SYNONYMOUS_CODING CG3368
2L	6777632	2L_6777632_SNP [dm3] 2L_6777632_SNP [dm6]	C	T	4.797e^-5	0.755	DOWNSTREAM nrv1 INTRON CG17378	TF binding site mE1_TFBS_cad
X	5605855	X_5605855_SNP [dm3] X_5711822_SNP [dm6]	G	A	4.834e^-5	0.755	INTRON CG33080
2L	16056179	2L_16056179_DEL [dm3] 2L_16056179_DEL [dm6]	TAA	T	4.863e^-5	0.755	INTRON beat-Ia
2L	17029849	2L_17029849_SNP [dm3] 2L_17029849_SNP [dm6]	A	T	4.912e^-5	0.755	INTERGENIC
2L	6777653	2L_6777653_SNP [dm3] 2L_6777653_SNP [dm6]	C	A	4.956e^-5	0.755	SPLICE_SITE_REGION CG17378 DOWNSTREAM nrv1 INTRON CG17378	TF binding site mE1_TFBS_cad
2R	9363664	2R_9363664_SNP [dm3] 2R_13476159_SNP [dm6]	A	G	5.023e^-5	0.755	INTRON arr
3L	5753939	3L_5753939_SNP [dm3] 3L_5760839_SNP [dm6]	T	C	5.024e^-5	0.755	INTRON Ubp64E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8702557	2R_8702557_SNP [dm3] 2R_12815052_SNP [dm6]	G	A	5.080e^-5	0.755	INTERGENIC
2L	4636468	2L_4636468_SNP [dm3] 2L_4636468_SNP [dm6]	A	T	5.121e^-5	0.755	INTERGENIC
X	13210621	X_13210621_SNP [dm3] X_13316588_SNP [dm6]	C	G	5.141e^-5	0.755	INTRON IP3K2
2L	15330368	2L_15330368_SNP [dm3] 2L_15330368_SNP [dm6]	C	A	5.157e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	852469	2L_852469_SNP [dm3] 2L_852469_SNP [dm6]	C	G	5.222e^-5	0.755	UPSTREAM kraken INTRON CG4291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	902724	3L_902724_SNP [dm3] 3L_902724_SNP [dm6]	A	T	5.305e^-5	0.755	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
X	19875888	X_19875888_DEL [dm3] X_19981855_DEL [dm6]	TA	T	5.349e^-5	0.755	INTERGENIC
3R	13796692	3R_13796692_SNP [dm3] 3R_17970970_SNP [dm6]	T	C	5.362e^-5	0.755	INTRON cpo
2L	13701208	2L_13701208_SNP [dm3] 2L_13701208_SNP [dm6]	A	T	5.380e^-5	0.755	INTRON CG31814
2L	3737115	2L_3737115_DEL [dm3] 2L_3737115_DEL [dm6]	AA	T	5.420e^-5	0.755	INTRON CG10019
3R	15247753	3R_15247753_SNP [dm3] 3R_19422031_SNP [dm6]	C	G	5.449e^-5	0.755	INTRON CG31221
3L	7940339	3L_7940339_SNP [dm3] 3L_7947239_SNP [dm6]	T	A	5.477e^-5	0.755	UPSTREAM CG43880 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14075847	3L_14075847_SNP [dm3] 3L_14082747_SNP [dm6]	G	C	5.505e^-5	0.755	SYNONYMOUS_CODING btl UPSTREAM CG8100	TF binding site mE1_TFBS_cad
X	7679958	X_7679958_SNP [dm3] X_7785925_SNP [dm6]	A	T	5.541e^-5	0.755	INTERGENIC
3R	25468117	3R_25468117_SNP [dm3] 3R_29642395_SNP [dm6]	T	C	5.559e^-5	0.755	INTRON Dop1R2	TF binding site mE1_TFBS_cad
3L	10403070	3L_10403070_SNP [dm3] 3L_10409970_SNP [dm6]	G	A	5.628e^-5	0.755	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25164519	3R_25164519_SNP [dm3] 3R_29338797_SNP [dm6]	G	T	5.668e^-5	0.755	INTERGENIC
X	8094060	X_8094060_SNP [dm3] X_8200027_SNP [dm6]	C	A	5.678e^-5	0.755	INTRON sdt
2L	17036038	2L_17036038_SNP [dm3] 2L_17036038_SNP [dm6]	A	T	5.800e^-5	0.758	INTERGENIC
2L	15771544	2L_15771544_SNP [dm3] 2L_15771544_SNP [dm6]	G	C	5.817e^-5	0.758	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	13659717	3R_13659717_SNP [dm3] 3R_17833995_SNP [dm6]	C	T	5.892e^-5	0.758	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	8024666	2L_8024666_SNP [dm3] 2L_8024666_SNP [dm6]	C	T	5.899e^-5	0.758	NON_SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_sens
3L	14355564	3L_14355564_SNP [dm3] 3L_14362464_SNP [dm6]	C	T	5.909e^-5	0.758	INTRON fz
3R	15982108	3R_15982108_SNP [dm3] 3R_20156386_SNP [dm6]	C	A	5.938e^-5	0.758	INTERGENIC
2L	16056176	2L_16056176_SNP [dm3] 2L_16056176_SNP [dm6]	A	T	6.027e^-5	0.764	INTRON beat-Ia
3R	17358561	3R_17358561_SNP [dm3] 3R_21532839_SNP [dm6]	C	A	6.249e^-5	0.775	INTRON CR43372
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	6.253e^-5	0.775	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	17004196	2L_17004196_SNP [dm3] 2L_17004196_SNP [dm6]	G	T	6.270e^-5	0.775	INTERGENIC
2R	8816070	2R_8816070_SNP [dm3] 2R_12928565_SNP [dm6]	C	T	6.277e^-5	0.775	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17773384	2L_17773384_SNP [dm3] 2L_17773384_SNP [dm6]	G	A	6.382e^-5	0.779	INTRON CadN
3L	13246895	3L_13246895_SNP [dm3] 3L_13253795_SNP [dm6]	A	G	6.426e^-5	0.779	INTRON caps	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8094070	X_8094070_SNP [dm3] X_8200037_SNP [dm6]	T	C	6.441e^-5	0.779	INTRON sdt
3L	15521714	3L_15521714_SNP [dm3] 3L_15528614_SNP [dm6]	G	T	6.478e^-5	0.779	UPSTREAM CG42728 INTRON obst-H
2R	19616946	2R_19616946_INS [dm3] 2R_23729423_INS [dm6]	A	AA	6.656e^-5	0.782	INTRON Sesn
3R	27119797	3R_27119797_DEL [dm3] 3R_31294075_DEL [dm6]	CAATCCTGCG	C	6.661e^-5	0.782	INTERGENIC
3R	21956164	3R_21956164_SNP [dm3] 3R_26130442_SNP [dm6]	T	G	6.712e^-5	0.782	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
X	9084092	X_9084092_SNP [dm3] X_9190059_SNP [dm6]	G	A	6.750e^-5	0.782	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
X	8050056	X_8050056_SNP [dm3] X_8156023_SNP [dm6]	T	C	6.779e^-5	0.782	SYNONYMOUS_CODING Traf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14603245	2R_14603245_SNP [dm3] 2R_18715740_SNP [dm6]	G	A	6.789e^-5	0.782	INTERGENIC
2L	13682324	2L_13682324_DEL [dm3] 2L_13682324_DEL [dm6]	AAC	A	6.828e^-5	0.782	INTRON CG31814
2L	8661015	2L_8661015_SNP [dm3] 2L_8661015_SNP [dm6]	A	T	6.874e^-5	0.782	INTRON Sema-1a
3L	2692958	3L_2692958_SNP [dm3] 3L_2692958_SNP [dm6]	A	T	6.920e^-5	0.782	INTRON Fife
2L	21996222	2L_21996222_SNP [dm3] 2L_21996222_SNP [dm6]	A	G	6.931e^-5	0.782	INTERGENIC
3L	9791174	3L_9791174_SNP [dm3] 3L_9798074_SNP [dm6]	G	C	6.975e^-5	0.782	UPSTREAM Ilp1 & 2 others INTERGENIC
3L	5824374	3L_5824374_SNP [dm3] 3L_5831274_SNP [dm6]	G	A	7.127e^-5	0.782	INTRON vn	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	7.147e^-5	0.782	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	18874114	3L_18874114_SNP [dm3] 3L_18881014_SNP [dm6]	T	A	7.167e^-5	0.782	INTRON CG3961	TF binding site mE1_TFBS_cad
2R	18103054	2R_18103054_SNP [dm3] 2R_22215549_SNP [dm6]	T	A	7.167e^-5	0.782	SYNONYMOUS_CODING ari-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14355563	3L_14355563_SNP [dm3] 3L_14362463_SNP [dm6]	A	T	7.173e^-5	0.782	INTRON fz
3L	13426961	3L_13426961_SNP [dm3] 3L_13433861_SNP [dm6]	T	A	7.366e^-5	0.793	UPSTREAM tRNA:V4:70BCa DOWNSTREAM tRNA:V4:70BCb INTRON CG10713
3L	8835607	3L_8835607_INS [dm3] 3L_8842507_INS [dm6]	C	TG	7.390e^-5	0.793	INTRON dally
2L	6777640	2L_6777640_SNP [dm3] 2L_6777640_SNP [dm6]	G	A	7.442e^-5	0.793	DOWNSTREAM nrv1 INTRON CG17378	TF binding site mE1_TFBS_cad
X	18611566	X_18611566_SNP [dm3] X_18717533_SNP [dm6]	G	T	7.443e^-5	0.793	INTRON CCKLR-17D1
3R	19541611	3R_19541611_SNP [dm3] 3R_23715889_SNP [dm6]	C	T	7.499e^-5	0.795	INTRON nau	regulatory region REDfly_CRMs
3L	18874118	3L_18874118_SNP [dm3] 3L_18881018_SNP [dm6]	T	C	7.613e^-5	0.796	INTRON CG3961	TF binding site mE1_TFBS_cad
3L	10403083	3L_10403083_SNP [dm3] 3L_10409983_SNP [dm6]	G	T	7.653e^-5	0.796	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16182566	3L_16182566_SNP [dm3] 3L_16189466_SNP [dm6]	G	A	7.665e^-5	0.796	INTERGENIC
2R	18100918	2R_18100918_SNP [dm3] 2R_22213413_SNP [dm6]	C	T	7.686e^-5	0.796	UTR_5_PRIME ari-2 DOWNSTREAM CG11291	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18840929	3R_18840929_DEL [dm3] 3R_23015207_DEL [dm6]	AA	A	7.825e^-5	0.806	UTR_3_PRIME CG6688	TF binding site mE1_TFBS_chinmo
3R	24066730	3R_24066730_INS [dm3] 3R_28241008_INS [dm6]	C	CGC	7.905e^-5	0.806	DOWNSTREAM CG34354 INTERGENIC
2L	10698249	2L_10698249_SNP [dm3] 2L_10698249_SNP [dm6]	G	T	7.906e^-5	0.806	UPSTREAM CG7300 DOWNSTREAM CR44181 INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	8266934	2L_8266934_SNP [dm3] 2L_8266934_SNP [dm6]	A	C	7.988e^-5	0.81	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3R	14923610	3R_14923610_SNP [dm3] 3R_19097888_SNP [dm6]	A	G	8.152e^-5	0.817	INTRON CG6040
X	7679966	X_7679966_SNP [dm3] X_7785933_SNP [dm6]	A	C	8.275e^-5	0.817	INTERGENIC
2L	11293500	2L_11293500_SNP [dm3] 2L_11293500_SNP [dm6]	G	A	8.278e^-5	0.817	INTERGENIC
3R	20296146	3R_20296146_SNP [dm3] 3R_24470424_SNP [dm6]	A	G	8.418e^-5	0.817	DOWNSTREAM CG31128 INTERGENIC
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	8.420e^-5	0.817	INTRON sano
2R	12049730	2R_12049730_INS [dm3] 2R_16162225_INS [dm6]	C	CTC	8.453e^-5	0.817	INTRON lbk
3R	17337440	3R_17337440_SNP [dm3] 3R_21511718_SNP [dm6]	C	A	8.535e^-5	0.817	INTRON C15
3R	17447986	3R_17447986_SNP [dm3] 3R_21622264_SNP [dm6]	C	A	8.573e^-5	0.817	UPSTREAM mir-998 DOWNSTREAM mir-11 INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13670915	3R_13670915_SNP [dm3] 3R_17845193_SNP [dm6]	C	T	8.592e^-5	0.817	INTRON tinc
2R	7435631	2R_7435631_SNP [dm3] 2R_11548126_SNP [dm6]	G	A	8.674e^-5	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2696407	3L_2696407_SNP [dm3] 3L_2696407_SNP [dm6]	T	A	8.678e^-5	0.817	INTRON Fife
2R	12119850	2R_12119850_DEL [dm3] 2R_16232345_DEL [dm6]	CCACGGC	AAAA	8.679e^-5	0.817		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13689870	2R_13689870_SNP [dm3] 2R_17802365_SNP [dm6]	G	A	8.723e^-5	0.817	UTR_5_PRIME grh UPSTREAM CR45270 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	1888165	3R_1888165_SNP [dm3] 3R_6062443_SNP [dm6]	G	T	8.730e^-5	0.817	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8174278	2R_8174278_SNP [dm3] 2R_12286773_SNP [dm6]	A	G	8.732e^-5	0.817	INTRON CG42700
2R	14603150	2R_14603150_SNP [dm3] 2R_18715645_SNP [dm6]	A	C	8.782e^-5	0.817	INTERGENIC
2L	16806258	2L_16806258_SNP [dm3] 2L_16806258_SNP [dm6]	A	T	8.855e^-5	0.817	INTRON CG13280 & 1 other
X	12732522	X_12732522_DEL [dm3] X_12838489_DEL [dm6]	TT	T	8.865e^-5	0.817	INTRON Pde9
2L	14768644	2L_14768644_SNP [dm3] 2L_14768644_SNP [dm6]	C	A	8.883e^-5	0.817	INTERGENIC
3R	25876759	3R_25876759_SNP [dm3] 3R_30051037_SNP [dm6]	C	T	9.013e^-5	0.825	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15822893	2R_15822893_SNP [dm3] 2R_19935388_SNP [dm6]	C	T	9.062e^-5	0.825	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	723878	2L_723878_SNP [dm3] 2L_723878_SNP [dm6]	G	A	9.159e^-5	0.827	INTERGENIC
2R	3134976	2R_3134976_DEL [dm3] 2R_7247471_DEL [dm6]	AAATATGC	A	9.184e^-5	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2903316	2L_2903316_SNP [dm3] 2L_2903316_SNP [dm6]	A	G	9.382e^-5	0.827	INTRON lilli	TF binding site mE1_TFBS_chinmo
2R	3681214	2R_3681214_SNP [dm3] 2R_7793709_SNP [dm6]	G	C	9.425e^-5	0.827	NON_SYNONYMOUS_CODING mus205 UPSTREAM Gapdh1	TF binding site mE1_TFBS_HSA
3R	25432737	3R_25432737_SNP [dm3] 3R_29607015_SNP [dm6]	G	T	9.511e^-5	0.827	INTRON alph
2R	2410510	2R_2410510_SNP [dm3] 2R_6523005_SNP [dm6]	G	T	9.534e^-5	0.827	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16056192	2L_16056192_SNP [dm3] 2L_16056192_SNP [dm6]	C	A	9.599e^-5	0.827	INTRON beat-Ia
2L	9801921	2L_9801921_SNP [dm3] 2L_9801921_SNP [dm6]	G	A	9.646e^-5	0.827	INTRON nAChRalpha6
2L	17773377	2L_17773377_DEL [dm3] 2L_17773377_DEL [dm6]	TT	T	9.759e^-5	0.827	INTRON CadN
3R	23112002	3R_23112002_SNP [dm3] 3R_27286280_SNP [dm6]	C	G	9.766e^-5	0.827	NON_SYNONYMOUS_CODING CG3368
2L	16056258	2L_16056258_SNP [dm3] 2L_16056258_SNP [dm6]	T	C	9.796e^-5	0.827	UTR_5_PRIME beat-Ia
2R	9319909	2R_9319909_SNP [dm3] 2R_13432404_SNP [dm6]	G	A	9.801e^-5	0.827	UPSTREAM tRNA:L3:49Fb & 1 other DOWNSTREAM tRNA:I:49Fd & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2L	8042156	2L_8042156_SNP [dm3] 2L_8042156_SNP [dm6]	G	A	9.815e^-5	0.827	DOWNSTREAM snoRNA:Psi28S-2648 & 1 other INTRON RpL36A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	9499442	X_9499442_SNP [dm3] X_9605409_SNP [dm6]	C	T	9.823e^-5	0.827	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4257678	2R_4257678_SNP [dm3] 2R_8370173_SNP [dm6]	T	G	9.897e^-5	0.827	UPSTREAM CG2127 & 1 other INTRON pdm3
3R	25529634	3R_25529634_SNP [dm3] 3R_29703912_SNP [dm6]	C	T	9.923e^-5	0.827	INTERGENIC
2L	15771568	2L_15771568_SNP [dm3] 2L_15771568_SNP [dm6]	T	G	1.008e^-4	0.827	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl
3L	15918327	3L_15918327_SNP [dm3] 3L_15925227_SNP [dm6]	A	G	1.011e^-4	0.827	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9977273	3R_9977273_SNP [dm3] 3R_14151551_SNP [dm6]	C	A	1.013e^-4	0.827	SYNONYMOUS_CODING CG14355 DOWNSTREAM CG42500
2R	14603238	2R_14603238_SNP [dm3] 2R_18715733_SNP [dm6]	T	C	1.017e^-4	0.827	INTERGENIC
3L	1622002	3L_1622002_SNP [dm3] 3L_1622002_SNP [dm6]	C	T	1.017e^-4	0.827	SYNONYMOUS_CODING ABCB7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9977291	3R_9977291_SNP [dm3] 3R_14151569_SNP [dm6]	A	G	1.026e^-4	0.827	SYNONYMOUS_CODING CG14355 DOWNSTREAM CG42500
3R	19583416	3R_19583416_SNP [dm3] 3R_23757694_SNP [dm6]	C	A	1.029e^-4	0.827	UTR_5_PRIME Hrd3 UPSTREAM Plip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	10543706	3L_10543706_SNP [dm3] 3L_10550606_SNP [dm6]	A	C	1.029e^-4	0.827	INTRON A2bp1
3L	15962715	3L_15962715_SNP [dm3] 3L_15969615_SNP [dm6]	T	A	1.038e^-4	0.827	DOWNSTREAM brm INTRON CG10516	TF binding site mE1_TFBS_cad
2L	15771536	2L_15771536_SNP [dm3] 2L_15771536_SNP [dm6]	T	A	1.051e^-4	0.827	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	19999151	3R_19999151_DEL [dm3] 3R_24173429_DEL [dm6]	TCTGAAT	T	1.051e^-4	0.827	INTRON CG13606	TF binding site BDTNP1_TFBS_z
2R	5231182	2R_5231182_SNP [dm3] 2R_9343677_SNP [dm6]	G	A	1.055e^-4	0.827	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_inv
3L	12458502	3L_12458502_SNP [dm3] 3L_12465402_SNP [dm6]	T	A	1.058e^-4	0.827	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	16851297	2R_16851297_SNP [dm3] 2R_20963792_SNP [dm6]	C	T	1.058e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16160207	X_16160207_SNP [dm3] X_16266174_SNP [dm6]	G	A	1.059e^-4	0.827	SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
X	20329590	X_20329590_SNP [dm3] X_20458563_SNP [dm6]	A	T	1.062e^-4	0.827	INTRON CG32506
3L	15938598	3L_15938598_SNP [dm3] 3L_15945498_SNP [dm6]	A	C	1.064e^-4	0.827	INTRON Pka-C3	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	16173759	3L_16173759_SNP [dm3] 3L_16180659_SNP [dm6]	T	C	1.068e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18099103	2R_18099103_SNP [dm3] 2R_22211598_SNP [dm6]	T	C	1.083e^-4	0.827	NON_SYNONYMOUS_CODING CG11291 UPSTREAM CG3264
2L	10630876	2L_10630876_SNP [dm3] 2L_10630876_SNP [dm6]	C	T	1.083e^-4	0.827	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_sens
2L	792700	2L_792700_SNP [dm3] 2L_792700_SNP [dm6]	A	G	1.085e^-4	0.827	INTERGENIC
3L	1363132	3L_1363132_SNP [dm3] 3L_1363132_SNP [dm6]	A	T	1.094e^-4	0.827	INTRON Ptp61F
3L	10678225	3L_10678225_SNP [dm3] 3L_10685125_SNP [dm6]	C	G	1.096e^-4	0.827	NON_SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11766042	2R_11766042_SNP [dm3] 2R_15878537_SNP [dm6]	C	T	1.101e^-4	0.827	INTRON sli
3R	11139550	3R_11139550_SNP [dm3] 3R_15313828_SNP [dm6]	T	C	1.101e^-4	0.827	UTR_3_PRIME Tm2 INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7245410	X_7245410_SNP [dm3] X_7351377_SNP [dm6]	T	A	1.125e^-4	0.827	INTRON CR44357 & 1 other
2L	17052693	2L_17052693_SNP [dm3] 2L_17052693_SNP [dm6]	A	T	1.129e^-4	0.827	INTERGENIC
X	6269678	X_6269678_SNP [dm3] X_6375645_SNP [dm6]	C	T	1.130e^-4	0.827	INTERGENIC
2L	3508285	2L_3508285_SNP [dm3] 2L_3508285_SNP [dm6]	G	A	1.133e^-4	0.827	UPSTREAM CR45299 & 2 others DOWNSTREAM CG31954 INTERGENIC
3R	26106230	3R_26106230_SNP [dm3] 3R_30280508_SNP [dm6]	C	T	1.139e^-4	0.827	INTRON hdc
2L	8279839	2L_8279839_SNP [dm3] 2L_8279839_SNP [dm6]	T	G	1.147e^-4	0.827	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	1340574	3L_1340574_SNP [dm3] 3L_1340574_SNP [dm6]	G	A	1.159e^-4	0.827	SYNONYMOUS_CODING CG2199	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17625749	X_17625749_SNP [dm3] X_17731716_SNP [dm6]	G	A	1.160e^-4	0.827	INTRON CG42684
2L	17773328	2L_17773328_SNP [dm3] 2L_17773328_SNP [dm6]	A	T	1.165e^-4	0.827	INTRON CadN
3R	14173732	3R_14173732_SNP [dm3] 3R_18348010_SNP [dm6]	C	T	1.165e^-4	0.827	INTRON CG15803
2R	7435632	2R_7435632_SNP [dm3] 2R_11548127_SNP [dm6]	T	A	1.166e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8371000	2R_8371000_SNP [dm3] 2R_12483495_SNP [dm6]	C	T	1.167e^-4	0.827	INTRON Dh44-R2
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	1.170e^-4	0.827	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14173591	3R_14173591_SNP [dm3] 3R_18347869_SNP [dm6]	A	G	1.176e^-4	0.827	INTRON CG15803
3L	19380842	3L_19380842_SNP [dm3] 3L_19387742_SNP [dm6]	C	A	1.194e^-4	0.827	NON_SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206
3L	10543697	3L_10543697_SNP [dm3] 3L_10550597_SNP [dm6]	C	T	1.196e^-4	0.827	INTRON A2bp1
2R	11477170	2R_11477170_SNP [dm3] 2R_15589665_SNP [dm6]	A	T	1.202e^-4	0.827	INTERGENIC
3L	11280965	3L_11280965_SNP [dm3] 3L_11287865_SNP [dm6]	C	T	1.204e^-4	0.827	DOWNSTREAM CG6175 INTERGENIC
3L	11029396	3L_11029396_SNP [dm3] 3L_11036296_SNP [dm6]	C	A	1.206e^-4	0.827	DOWNSTREAM CG43693 & 1 other INTERGENIC
3L	15790917	3L_15790917_SNP [dm3] 3L_15797817_SNP [dm6]	G	C	1.222e^-4	0.827	INTERGENIC
3L	11265523	3L_11265523_SNP [dm3] 3L_11272423_SNP [dm6]	T	C	1.224e^-4	0.827	INTERGENIC
2L	15748981	2L_15748981_SNP [dm3] 2L_15748981_SNP [dm6]	G	T	1.234e^-4	0.827	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3L	13246545	3L_13246545_SNP [dm3] 3L_13253445_SNP [dm6]	T	C	1.237e^-4	0.827	INTRON caps	TF binding site mE1_TFBS_inv
2R	8816060	2R_8816060_SNP [dm3] 2R_12928555_SNP [dm6]	G	A	1.246e^-4	0.827	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25199681	3R_25199681_SNP [dm3] 3R_29373959_SNP [dm6]	G	A	1.249e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19117886	3L_19117886_SNP [dm3] 3L_19124786_SNP [dm6]	A	C	1.251e^-4	0.827	INTRON CG14082
3R	25199689	3R_25199689_SNP [dm3] 3R_29373967_SNP [dm6]	C	T	1.254e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18102922	2R_18102922_SNP [dm3] 2R_22215417_SNP [dm6]	G	A	1.258e^-4	0.827	SYNONYMOUS_CODING ari-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16183684	3L_16183684_SNP [dm3] 3L_16190584_SNP [dm6]	G	T	1.272e^-4	0.827	INTERGENIC
3L	14075957	3L_14075957_SNP [dm3] 3L_14082857_SNP [dm6]	T	C	1.280e^-4	0.827	UTR_3_PRIME btl UPSTREAM CG8100
X	17934069	X_17934069_SNP [dm3] X_18040036_SNP [dm6]	T	C	1.294e^-4	0.827	UTR_5_PRIME Sh UPSTREAM Sh INTRON Sh
3R	22443163	3R_22443163_SNP [dm3] 3R_26617441_SNP [dm6]	A	T	1.297e^-4	0.827	INTERGENIC
X	20854720	X_20854720_INS [dm3] X_20983693_INS [dm6]	A	AG	1.300e^-4	0.827	UPSTREAM CG11666 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	1881334	3R_1881334_SNP [dm3] 3R_6055612_SNP [dm6]	A	G	1.304e^-4	0.827	SYNONYMOUS_CODING CG15580
3R	10417764	3R_10417764_SNP [dm3] 3R_14592042_SNP [dm6]	T	C	1.320e^-4	0.827	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9347663	2L_9347663_INS [dm3] 2L_9347663_INS [dm6]	T	TATGGAATT	1.329e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	1886387	2L_1886387_INS [dm3] 2L_1886387_INS [dm6]	G	GCTG	1.337e^-4	0.827	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18402833	X_18402833_SNP [dm3] X_18508800_SNP [dm6]	T	C	1.340e^-4	0.827	INTRON Ggt-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc
2L	4205745	2L_4205745_SNP [dm3] 2L_4205745_SNP [dm6]	C	T	1.343e^-4	0.827	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3R	19584198	3R_19584198_SNP [dm3] 3R_23758476_SNP [dm6]	T	A	1.343e^-4	0.827	START_GAINED Hrd3 UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	11914572	2R_11914572_SNP [dm3] 2R_16027067_SNP [dm6]	T	A	1.348e^-4	0.827	INTRON casp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	1.355e^-4	0.827	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3L	16245401	3L_16245401_SNP [dm3] 3L_16252301_SNP [dm6]	T	G	1.356e^-4	0.827	UTR_5_PRIME CG13055
3L	11029385	3L_11029385_SNP [dm3] 3L_11036285_SNP [dm6]	G	A	1.356e^-4	0.827	DOWNSTREAM CG43693 & 1 other INTERGENIC
3L	1611599	3L_1611599_SNP [dm3] 3L_1611599_SNP [dm6]	G	T	1.358e^-4	0.827	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
3L	15585602	3L_15585602_SNP [dm3] 3L_15592502_SNP [dm6]	C	T	1.369e^-4	0.827	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl
3L	1209655	3L_1209655_SNP [dm3] 3L_1209655_SNP [dm6]	T	A	1.383e^-4	0.827	UPSTREAM LysC INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	13789160	3R_13789160_SNP [dm3] 3R_17963438_SNP [dm6]	G	A	1.385e^-4	0.827	INTRON cpo
X	13210898	X_13210898_SNP [dm3] X_13316865_SNP [dm6]	G	C	1.386e^-4	0.827	INTRON IP3K2
X	3526584	X_3526584_DEL [dm3] X_3632551_DEL [dm6]	TCACTGAAT	T	1.411e^-4	0.827	INTRON AstA-R1
X	5395513	X_5395513_SNP [dm3] X_5501480_SNP [dm6]	T	A	1.417e^-4	0.827	UTR_5_PRIME CG4151 UPSTREAM CG4151 & 1 other
3L	2902369	3L_2902369_SNP [dm3] 3L_2902369_SNP [dm6]	C	G	1.418e^-4	0.827	INTRON Shab
3R	25534216	3R_25534216_SNP [dm3] 3R_29708494_SNP [dm6]	G	A	1.419e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13643781	2L_13643781_SNP [dm3] 2L_13643781_SNP [dm6]	G	C	1.425e^-4	0.827	DOWNSTREAM CR44726 INTERGENIC
3L	16182489	3L_16182489_SNP [dm3] 3L_16189389_SNP [dm6]	C	T	1.432e^-4	0.827	INTERGENIC
X	7679961	X_7679961_SNP [dm3] X_7785928_SNP [dm6]	A	C	1.433e^-4	0.827	INTERGENIC
3R	23112006	3R_23112006_SNP [dm3] 3R_27286284_SNP [dm6]	T	G	1.437e^-4	0.827	NON_SYNONYMOUS_CODING CG3368
X	5395494	X_5395494_SNP [dm3] X_5501461_SNP [dm6]	T	C	1.438e^-4	0.827	UPSTREAM CG4151 & 1 other INTERGENIC
2L	7494272	2L_7494272_SNP [dm3] 2L_7494272_SNP [dm6]	G	A	1.440e^-4	0.827	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14933040	2L_14933040_INS [dm3] 2L_14933040_INS [dm6]	C	CC	1.448e^-4	0.827	INTRON CG42313
2L	6777626	2L_6777626_SNP [dm3] 2L_6777626_SNP [dm6]	G	C	1.449e^-4	0.827	DOWNSTREAM nrv1 INTRON CG17378	TF binding site mE1_TFBS_cad
2R	15693529	2R_15693529_SNP [dm3] 2R_19806024_SNP [dm6]	G	A	1.450e^-4	0.827	INTERGENIC
2R	17071497	2R_17071497_SNP [dm3] 2R_21183992_SNP [dm6]	T	A	1.456e^-4	0.827	INTRON tud	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17358544	3R_17358544_SNP [dm3] 3R_21532822_SNP [dm6]	T	A	1.456e^-4	0.827	INTRON CR43372
2L	16103827	2L_16103827_SNP [dm3] 2L_16103827_SNP [dm6]	C	T	1.463e^-4	0.827	INTERGENIC
2R	19041744	2R_19041744_SNP [dm3] 2R_23154221_SNP [dm6]	A	T	1.467e^-4	0.827	DOWNSTREAM CG43207 INTRON CG9899
2R	19041747	2R_19041747_SNP [dm3] 2R_23154224_SNP [dm6]	C	G	1.467e^-4	0.827	DOWNSTREAM CG43207 INTRON CG9899
3R	25529635	3R_25529635_SNP [dm3] 3R_29703913_SNP [dm6]	G	A	1.471e^-4	0.827	INTERGENIC
2R	16851227	2R_16851227_DEL [dm3] 2R_20963722_DEL [dm6]	AA	A	1.472e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19911618	2L_19911618_SNP [dm3] 2L_19911618_SNP [dm6]	A	C	1.472e^-4	0.827	DOWNSTREAM TotF INTRON sick EXON CR43097	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14088158	2L_14088158_SNP [dm3] 2L_14088158_SNP [dm6]	T	A	1.477e^-4	0.827	INTRON nAChRalpha5
X	12430098	X_12430098_SNP [dm3] X_12536065_SNP [dm6]	A	T	1.483e^-4	0.827	INTRON CG43921
X	15129943	X_15129943_DEL [dm3] X_15235910_DEL [dm6]	ATGTCC	G	1.484e^-4	0.827	INTERGENIC
2R	15830158	2R_15830158_INS [dm3] 2R_19942653_INS [dm6]	T	TTTA	1.491e^-4	0.827	INTERGENIC
2L	15974401	2L_15974401_SNP [dm3] 2L_15974401_SNP [dm6]	T	G	1.491e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	519255	2L_519255_INS [dm3] 2L_519255_INS [dm6]	A	ACCA	1.492e^-4	0.827	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	17625729	X_17625729_SNP [dm3] X_17731696_SNP [dm6]	T	C	1.492e^-4	0.827	INTRON CG42684
2R	8799998	2R_8799998_SNP [dm3] 2R_12912493_SNP [dm6]	C	T	1.496e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3796304	2L_3796304_SNP [dm3] 2L_3796304_SNP [dm6]	A	G	1.498e^-4	0.827	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
3L	3919407	3L_3919407_SNP [dm3] 3L_3919407_SNP [dm6]	A	T	1.516e^-4	0.827	INTRON Eip63F-1
2R	8293428	2R_8293428_SNP [dm3] 2R_12405923_SNP [dm6]	G	A	1.532e^-4	0.827	UPSTREAM Cpr49Af DOWNSTREAM Cpr49Ae INTERGENIC
3L	13950600	3L_13950600_SNP [dm3] 3L_13957500_SNP [dm6]	T	C	1.535e^-4	0.827	INTRON CG32137	TF binding site mE1_TFBS_inv
3R	25529640	3R_25529640_SNP [dm3] 3R_29703918_SNP [dm6]	C	T	1.541e^-4	0.827	INTERGENIC
3R	23105957	3R_23105957_SNP [dm3] 3R_27280235_SNP [dm6]	T	C	1.543e^-4	0.827	INTRON mrt
3R	17386777	3R_17386777_SNP [dm3] 3R_21561055_SNP [dm6]	T	C	1.544e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	21235757	X_21235757_SNP [dm3] X_21364730_SNP [dm6]	C	G	1.549e^-4	0.827	NON_SYNONYMOUS_CODING waw UTR_5_PRIME bbx	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
2R	18102619	2R_18102619_SNP [dm3] 2R_22215114_SNP [dm6]	G	A	1.557e^-4	0.827	SYNONYMOUS_CODING ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8279779	2L_8279779_DEL [dm3] 2L_8279779_DEL [dm6]	AA	A	1.557e^-4	0.827	INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
2L	5104010	2L_5104010_SNP [dm3] 2L_5104010_SNP [dm6]	C	T	1.557e^-4	0.827	INTRON Msp300	insulator Insulator_Class_II.mE01
3L	2696408	3L_2696408_SNP [dm3] 3L_2696408_SNP [dm6]	C	A	1.559e^-4	0.827	INTRON Fife
2L	17406695	2L_17406695_SNP [dm3] 2L_17406695_SNP [dm6]	T	G	1.560e^-4	0.827	SYNONYMOUS_CODING CLIP-190
3R	10417891	3R_10417891_SNP [dm3] 3R_14592169_SNP [dm6]	A	T	1.562e^-4	0.827	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10417868	3R_10417868_SNP [dm3] 3R_14592146_SNP [dm6]	G	T	1.569e^-4	0.827	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16051667	2L_16051667_SNP [dm3] 2L_16051667_SNP [dm6]	C	T	1.572e^-4	0.827	INTRON beat-Ia	TF binding site mE1_TFBS_cad
X	4144306	X_4144306_SNP [dm3] X_4250273_SNP [dm6]	A	T	1.573e^-4	0.827	INTERGENIC
X	20401016	X_20401016_DEL [dm3] X_20529989_DEL [dm6]	TT	T	1.593e^-4	0.827	INTERGENIC
3L	8717305	3L_8717305_SNP [dm3] 3L_8724205_SNP [dm6]	G	A	1.594e^-4	0.827	SYNONYMOUS_CODING CG6511
3L	16453968	3L_16453968_SNP [dm3] 3L_16460868_SNP [dm6]	A	T	1.598e^-4	0.827	INTRON CG33158
3R	1922727	3R_1922727_SNP [dm3] 3R_6097005_SNP [dm6]	A	G	1.605e^-4	0.827	INTRON Gasp
3R	13793892	3R_13793892_SNP [dm3] 3R_17968170_SNP [dm6]	T	G	1.609e^-4	0.827	INTRON cpo
2R	12119956	2R_12119956_SNP [dm3] 2R_16232451_SNP [dm6]	A	C	1.610e^-4	0.827	NON_SYNONYMOUS_CODING CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19623575	3L_19623575_SNP [dm3] 3L_19630475_SNP [dm6]	G	C	1.610e^-4	0.827	INTRON wnd
2L	2696002	2L_2696002_SNP [dm3] 2L_2696002_SNP [dm6]	A	G	1.612e^-4	0.827	INTRON CG31690 & 1 other
X	9500168	X_9500168_SNP [dm3] X_9606135_SNP [dm6]	T	C	1.613e^-4	0.827	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14768632	2L_14768632_SNP [dm3] 2L_14768632_SNP [dm6]	A	G	1.616e^-4	0.827	INTERGENIC
3R	14923560	3R_14923560_SNP [dm3] 3R_19097838_SNP [dm6]	A	G	1.619e^-4	0.827	INTRON CG6040
2L	2821415	2L_2821415_SNP [dm3] 2L_2821415_SNP [dm6]	G	A	1.620e^-4	0.827	INTRON Duox
2L	14088240	2L_14088240_SNP [dm3] 2L_14088240_SNP [dm6]	T	G	1.625e^-4	0.827	INTRON nAChRalpha5
2R	8835349	2R_8835349_SNP [dm3] 2R_12947844_SNP [dm6]	T	C	1.625e^-4	0.827	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13089400	X_13089400_SNP [dm3] X_13195367_SNP [dm6]	T	C	1.640e^-4	0.827	UPSTREAM CG2453 DOWNSTREAM sno INTERGENIC
2L	4454023	2L_4454023_SNP [dm3] 2L_4454023_SNP [dm6]	C	A	1.645e^-4	0.827	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8824136	2R_8824136_SNP [dm3] 2R_12936631_SNP [dm6]	T	G	1.655e^-4	0.827	UPSTREAM Sans & 1 other DOWNSTREAM CG30487 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16103747	2L_16103747_SNP [dm3] 2L_16103747_SNP [dm6]	G	A	1.655e^-4	0.827	INTERGENIC
3L	10214307	3L_10214307_SNP [dm3] 3L_10221207_SNP [dm6]	C	A	1.656e^-4	0.827	INTRON scramb1	TF binding site mE1_TFBS_cad
2L	14441969	2L_14441969_SNP [dm3] 2L_14441969_SNP [dm6]	C	T	1.675e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	9256576	2R_9256576_SNP [dm3] 2R_13369071_SNP [dm6]	G	A	1.682e^-4	0.827	INTERGENIC
2L	5231305	2L_5231305_SNP [dm3] 2L_5231305_SNP [dm6]	T	C	1.682e^-4	0.827	INTRON tkv	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5096048	3R_5096048_DEL [dm3] 3R_9270326_DEL [dm6]	CC	C	1.696e^-4	0.827	DOWNSTREAM Vps16A INTERGENIC
3L	11647438	3L_11647438_INS [dm3] 3L_11654338_INS [dm6]	T	TT	1.704e^-4	0.827	INTRON CG32085
3R	20030487	3R_20030487_SNP [dm3] 3R_24204765_SNP [dm6]	T	A	1.705e^-4	0.827	INTRON twin
3L	1359067	3L_1359067_SNP [dm3] 3L_1359067_SNP [dm6]	T	C	1.708e^-4	0.827	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	7574108	2R_7574108_SNP [dm3] 2R_11686603_SNP [dm6]	T	C	1.713e^-4	0.827	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9366509	2R_9366509_SNP [dm3] 2R_13479004_SNP [dm6]	A	G	1.714e^-4	0.827	DOWNSTREAM CG43192 INTRON arr
2L	9347766	2L_9347766_SNP [dm3] 2L_9347766_SNP [dm6]	C	T	1.715e^-4	0.827	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	3861686	3R_3861686_SNP [dm3] 3R_8035964_SNP [dm6]	T	C	1.718e^-4	0.827	SYNONYMOUS_CODING unc-45
2L	13868108	2L_13868108_SNP [dm3] 2L_13868108_SNP [dm6]	C	T	1.720e^-4	0.827	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3466769	X_3466769_SNP [dm3] X_3572736_SNP [dm6]	C	T	1.721e^-4	0.827	NON_SYNONYMOUS_CODING CG2875 DOWNSTREAM ppk8	TF binding site BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	15749014	2L_15749014_SNP [dm3] 2L_15749014_SNP [dm6]	T	C	1.728e^-4	0.827	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	17029843	2L_17029843_SNP [dm3] 2L_17029843_SNP [dm6]	T	C	1.729e^-4	0.827	INTERGENIC
3L	16368700	3L_16368700_SNP [dm3] 3L_16375600_SNP [dm6]	A	G	1.739e^-4	0.827	NON_SYNONYMOUS_CODING roq	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12376504	2L_12376504_SNP [dm3] 2L_12376504_SNP [dm6]	C	A	1.749e^-4	0.827	INTRON bru-2
2L	12376506	2L_12376506_SNP [dm3] 2L_12376506_SNP [dm6]	C	T	1.749e^-4	0.827	INTRON bru-2
2L	12376509	2L_12376509_INS [dm3] 2L_12376509_INS [dm6]	T	TTCGCATA	1.749e^-4	0.827	INTRON bru-2
X	17268955	X_17268955_SNP [dm3] X_17374922_SNP [dm6]	C	G	1.754e^-4	0.827	INTERGENIC
2R	18553298	2R_18553298_SNP [dm3] 2R_22665793_SNP [dm6]	G	C	1.760e^-4	0.827	UPSTREAM CR42868 DOWNSTREAM CR45269 INTRON CG42867
3L	10403091	3L_10403091_SNP [dm3] 3L_10409991_SNP [dm6]	A	G	1.765e^-4	0.827	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	12167511	2L_12167511_SNP [dm3] 2L_12167511_SNP [dm6]	T	C	1.770e^-4	0.827	DOWNSTREAM ZnT33D INTRON CG31760
3L	3518467	3L_3518467_SNP [dm3] 3L_3518467_SNP [dm6]	C	G	1.773e^-4	0.827	INTRON Eip63E
X	19781779	X_19781779_INS [dm3] X_19887746_INS [dm6]	A	AA	1.773e^-4	0.827	UTR_5_PRIME amn INTRON Hers	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	5914842	X_5914842_SNP [dm3] X_6020809_SNP [dm6]	A	G	1.776e^-4	0.827	INTERGENIC
2R	7134641	2R_7134641_SNP [dm3] 2R_11247136_SNP [dm6]	A	G	1.789e^-4	0.827	UPSTREAM CG34227 DOWNSTREAM CR30029 INTERGENIC
2L	19412261	2L_19412261_SNP [dm3] 2L_19412261_SNP [dm6]	T	A	1.790e^-4	0.827	UPSTREAM Pax INTRON Pax
3R	1971661	3R_1971661_SNP [dm3] 3R_6145939_SNP [dm6]	T	A	1.794e^-4	0.827	INTERGENIC
2L	17032603	2L_17032603_SNP [dm3] 2L_17032603_SNP [dm6]	A	G	1.796e^-4	0.827	INTERGENIC
2L	4267715	2L_4267715_SNP [dm3] 2L_4267715_SNP [dm6]	T	A	1.802e^-4	0.827	INTERGENIC
2R	12812366	2R_12812366_SNP [dm3] 2R_16924861_SNP [dm6]	A	C	1.804e^-4	0.827	UPSTREAM Pkc53E INTRON Pkc53E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3518870	3L_3518870_SNP [dm3] 3L_3518870_SNP [dm6]	G	A	1.812e^-4	0.827	INTRON Eip63E
3R	3308894	3R_3308894_SNP [dm3] 3R_7483172_SNP [dm6]	A	C	1.819e^-4	0.827	INTERGENIC
3L	11146917	3L_11146917_SNP [dm3] 3L_11153817_SNP [dm6]	C	G	1.821e^-4	0.827	INTRON CG32082
2R	7135642	2R_7135642_DEL [dm3] 2R_11248137_DEL [dm6]	CGAGTCTG	C	1.821e^-4	0.827	UTR_5_PRIME CG34227
2L	3735421	2L_3735421_INS [dm3] 2L_3735421_INS [dm6]	T	TT	1.826e^-4	0.827	INTRON CG10019
3L	10774363	3L_10774363_SNP [dm3] 3L_10781263_SNP [dm6]	C	G	1.832e^-4	0.827	INTERGENIC
2L	8003689	2L_8003689_SNP [dm3] 2L_8003689_SNP [dm6]	A	G	1.833e^-4	0.827	SYNONYMOUS_CODING Wwox DOWNSTREAM Spn28Dc
3R	10242460	3R_10242460_INS [dm3] 3R_14416738_INS [dm6]	A	TTGG	1.842e^-4	0.827		TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4454065	2L_4454065_SNP [dm3] 2L_4454065_SNP [dm6]	A	G	1.843e^-4	0.827	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5231680	2L_5231680_SNP [dm3] 2L_5231680_SNP [dm6]	C	G	1.844e^-4	0.827	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv
2R	11686262	2R_11686262_DEL [dm3] 2R_15798757_DEL [dm6]	GTAGGATCACT...	G	1.846e^-4	0.827	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	15974396	2L_15974396_SNP [dm3] 2L_15974396_SNP [dm6]	T	A	1.849e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15938662	3L_15938662_SNP [dm3] 3L_15945562_SNP [dm6]	C	T	1.849e^-4	0.827	INTRON Pka-C3	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	9791172	3L_9791172_SNP [dm3] 3L_9798072_SNP [dm6]	C	T	1.852e^-4	0.827	UPSTREAM Ilp1 & 2 others INTERGENIC
2R	18103669	2R_18103669_SNP [dm3] 2R_22216164_SNP [dm6]	G	A	1.858e^-4	0.827	SYNONYMOUS_CODING ari-2
X	4706430	X_4706430_SNP [dm3] X_4812397_SNP [dm6]	G	A	1.859e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10606859	2R_10606859_DEL [dm3] 2R_14719354_DEL [dm6]	AGTACGGATTCCGTA...	A	1.859e^-4	0.827	INTERGENIC
2L	15748975	2L_15748975_SNP [dm3] 2L_15748975_SNP [dm6]	G	T	1.864e^-4	0.827	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3R	13312909	3R_13312909_SNP [dm3] 3R_17487187_SNP [dm6]	C	T	1.866e^-4	0.827	INTRON Dscam3
3L	6708576	3L_6708576_SNP [dm3] 3L_6715476_SNP [dm6]	A	G	1.869e^-4	0.827	INTRON ple	TF binding site mE1_TFBS_chinmo
3R	16715260	3R_16715260_SNP [dm3] 3R_20889538_SNP [dm6]	A	C	1.872e^-4	0.827	INTERGENIC
X	7245407	X_7245407_SNP [dm3] X_7351374_SNP [dm6]	C	T	1.876e^-4	0.827	INTRON CR44357 & 1 other
X	5395482	X_5395482_SNP [dm3] X_5501449_SNP [dm6]	G	A	1.878e^-4	0.827	UPSTREAM CG4151 & 1 other INTERGENIC
2L	12376443	2L_12376443_SNP [dm3] 2L_12376443_SNP [dm6]	G	A	1.885e^-4	0.827	INTRON bru-2
3L	16183918	3L_16183918_SNP [dm3] 3L_16190818_SNP [dm6]	A	G	1.913e^-4	0.827	INTERGENIC
2L	15823561	2L_15823561_SNP [dm3] 2L_15823561_SNP [dm6]	C	T	1.914e^-4	0.827	UPSTREAM CR44601 INTERGENIC
X	20211840	X_20211840_SNP [dm3] X_20340813_SNP [dm6]	C	T	1.914e^-4	0.827	INTERGENIC
2L	10826260	2L_10826260_SNP [dm3] 2L_10826260_SNP [dm6]	G	A	1.920e^-4	0.827	INTRON Nos
2L	13682329	2L_13682329_SNP [dm3] 2L_13682329_SNP [dm6]	A	T	1.924e^-4	0.827	INTRON CG31814
3L	1359013	3L_1359013_SNP [dm3] 3L_1359013_SNP [dm6]	T	G	1.942e^-4	0.827	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	14768110	2L_14768110_MNP [dm3] 2L_14768110_MNP [dm6]	AAA	TCG	1.952e^-4	0.827	DOWNSTREAM CG4701 INTERGENIC
2L	9175945	2L_9175945_SNP [dm3] 2L_9175945_SNP [dm6]	A	C	1.954e^-4	0.827	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	2696001	2L_2696001_SNP [dm3] 2L_2696001_SNP [dm6]	G	T	1.954e^-4	0.827	INTRON CG31690 & 1 other
2L	7188762	2L_7188762_SNP [dm3] 2L_7188762_SNP [dm6]	A	T	1.971e^-4	0.827	UPSTREAM CG4496 INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16702273	3R_16702273_SNP [dm3] 3R_20876551_SNP [dm6]	C	T	1.974e^-4	0.827	INTERGENIC
2L	9194106	2L_9194106_SNP [dm3] 2L_9194106_SNP [dm6]	G	T	1.977e^-4	0.827	INTRON tai
3L	15918257	3L_15918257_INS [dm3] 3L_15925157_INS [dm6]	A	AATTTGTATCGAG...	1.978e^-4	0.827	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2696410	3L_2696410_SNP [dm3] 3L_2696410_SNP [dm6]	A	G	1.980e^-4	0.827	INTRON Fife
3L	2696413	3L_2696413_SNP [dm3] 3L_2696413_SNP [dm6]	C	G	1.981e^-4	0.827	INTRON Fife
3R	22927170	3R_22927170_SNP [dm3] 3R_27101448_SNP [dm6]	C	G	1.982e^-4	0.827	UTR_5_PRIME CG17189	regulatory region REDfly_CRMs
3R	25290291	3R_25290291_SNP [dm3] 3R_29464569_SNP [dm6]	A	T	1.984e^-4	0.827	INTRON Ptp99A
2L	15773524	2L_15773524_SNP [dm3] 2L_15773524_SNP [dm6]	A	G	1.991e^-4	0.827	UPSTREAM CG31826 INTERGENIC
3L	2440088	3L_2440088_SNP [dm3] 3L_2440088_SNP [dm6]	A	T	2.006e^-4	0.827	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16570580	2R_16570580_INS [dm3] 2R_20683075_INS [dm6]	C	CAC	2.007e^-4	0.827	INTERGENIC
2R	12341963	2R_12341963_SNP [dm3] 2R_16454458_SNP [dm6]	C	A	2.014e^-4	0.827	INTERGENIC
X	19781812	X_19781812_SNP [dm3] X_19887779_SNP [dm6]	A	G	2.023e^-4	0.827	UTR_5_PRIME amn INTRON Hers	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	15773584	2L_15773584_SNP [dm3] 2L_15773584_SNP [dm6]	A	G	2.040e^-4	0.827	UPSTREAM CG31826 INTERGENIC
2R	9319396	2R_9319396_SNP [dm3] 2R_13431891_SNP [dm6]	T	C	2.040e^-4	0.827	UPSTREAM tRNA:I:49Fe & 1 other DOWNSTREAM tRNA:I:49Fb & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9319443	2R_9319443_SNP [dm3] 2R_13431938_SNP [dm6]	G	C	2.040e^-4	0.827	UPSTREAM tRNA:I:49Fe & 1 other DOWNSTREAM tRNA:I:49Fb & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20297257	2L_20297257_SNP [dm3] 2L_20297257_SNP [dm6]	G	C	2.044e^-4	0.827	EXON CR43414
3L	5369956	3L_5369956_SNP [dm3] 3L_5376856_SNP [dm6]	G	C	2.050e^-4	0.827	UPSTREAM CR45743 INTERGENIC
2L	19982245	2L_19982245_SNP [dm3] 2L_19982245_SNP [dm6]	A	T	2.050e^-4	0.827	INTRON CG43861
3L	1366287	3L_1366287_SNP [dm3] 3L_1366287_SNP [dm6]	G	T	2.074e^-4	0.827	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	3396175	2L_3396175_SNP [dm3] 2L_3396175_SNP [dm6]	C	T	2.075e^-4	0.827	INTERGENIC
2R	15551899	2R_15551899_SNP [dm3] 2R_19664394_SNP [dm6]	G	A	2.085e^-4	0.827	UTR_3_PRIME hrg DOWNSTREAM CG11018 & 1 other
3R	22443153	3R_22443153_SNP [dm3] 3R_26617431_SNP [dm6]	C	G	2.089e^-4	0.827	INTERGENIC
X	12605772	X_12605772_SNP [dm3] X_12711739_SNP [dm6]	G	C	2.091e^-4	0.827	NON_SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3952066	2L_3952066_SNP [dm3] 2L_3952066_SNP [dm6]	T	A	2.097e^-4	0.827	INTRON fred
3L	10510570	3L_10510570_SNP [dm3] 3L_10517470_SNP [dm6]	T	G	2.100e^-4	0.827	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3141273	X_3141273_SNP [dm3] X_3247240_SNP [dm6]	A	G	2.102e^-4	0.827	INTRON dnc
3R	17358555	3R_17358555_DEL [dm3] 3R_21532833_DEL [dm6]	TA	G	2.103e^-4	0.827	INTRON CR43372
2R	10601775	2R_10601775_SNP [dm3] 2R_14714270_SNP [dm6]	T	C	2.104e^-4	0.827	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17414672	2L_17414672_SNP [dm3] 2L_17414672_SNP [dm6]	T	C	2.111e^-4	0.827	DOWNSTREAM Dif INTRON Dif
2R	19628704	2R_19628704_SNP [dm3] 2R_23741181_SNP [dm6]	G	A	2.114e^-4	0.827	INTRON egl
3R	13970198	3R_13970198_SNP [dm3] 3R_18144476_SNP [dm6]	A	T	2.128e^-4	0.827	INTERGENIC
2L	1721787	2L_1721787_SNP [dm3] 2L_1721787_SNP [dm6]	C	A	2.139e^-4	0.827	INTRON Rim2
3R	10206259	3R_10206259_SNP [dm3] 3R_14380537_SNP [dm6]	G	C	2.147e^-4	0.827	DOWNSTREAM soti INTERGENIC
2L	20285983	2L_20285983_SNP [dm3] 2L_20285983_SNP [dm6]	C	A	2.149e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19880897	2L_19880897_SNP [dm3] 2L_19880897_SNP [dm6]	T	C	2.151e^-4	0.827	INTRON sick
2R	8807837	2R_8807837_SNP [dm3] 2R_12920332_SNP [dm6]	A	G	2.166e^-4	0.827	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24886555	3R_24886555_SNP [dm3] 3R_29060833_SNP [dm6]	G	A	2.166e^-4	0.827	SYNONYMOUS_CODING Cul5	TF binding site mE1_TFBS_sens
3L	1363033	3L_1363033_SNP [dm3] 3L_1363033_SNP [dm6]	C	A	2.169e^-4	0.827	INTRON Ptp61F
2L	5635156	2L_5635156_SNP [dm3] 2L_5635156_SNP [dm6]	C	T	2.169e^-4	0.827	INTRON CG31646	TF binding site BDTNP1_TFBS_hb
2L	19412859	2L_19412859_SNP [dm3] 2L_19412859_SNP [dm6]	G	A	2.183e^-4	0.827	INTRON Pax
3R	22954701	3R_22954701_SNP [dm3] 3R_27128979_SNP [dm6]	G	A	2.187e^-4	0.827	INTRON CG6051	TF binding site mE1_TFBS_cad
3R	16167252	3R_16167252_SNP [dm3] 3R_20341530_SNP [dm6]	T	G	2.187e^-4	0.827	INTRON Ir92a
3R	2828369	3R_2828369_INS [dm3] 3R_7002647_INS [dm6]	A	AA	2.195e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11686132	2R_11686132_SNP [dm3] 2R_15798627_SNP [dm6]	A	T	2.195e^-4	0.827	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19930639	2L_19930639_SNP [dm3] 2L_19930639_SNP [dm6]	G	A	2.196e^-4	0.827	INTRON sick
2L	1718377	2L_1718377_SNP [dm3] 2L_1718377_SNP [dm6]	G	A	2.196e^-4	0.827	INTRON Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8789137	2R_8789137_SNP [dm3] 2R_12901632_SNP [dm6]	G	A	2.196e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	1775647	3R_1775647_SNP [dm3] 3R_5949925_SNP [dm6]	A	G	2.206e^-4	0.827	INTRON CG34113
3L	1619706	3L_1619706_SNP [dm3] 3L_1619706_SNP [dm6]	T	A	2.209e^-4	0.827	SYNONYMOUS_CODING CG33230 INTRON ABCB7	TF binding site mE1_TFBS_sens
2L	19794170	2L_19794170_DEL [dm3] 2L_19794170_DEL [dm6]	TT	T	2.216e^-4	0.827	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
2R	17312707	2R_17312707_SNP [dm3] 2R_21425202_SNP [dm6]	T	A	2.224e^-4	0.827	INTRON Sdc
2R	12026492	2R_12026492_SNP [dm3] 2R_16138987_SNP [dm6]	A	G	2.226e^-4	0.827	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9332309	3R_9332309_SNP [dm3] 3R_13506587_SNP [dm6]	A	G	2.234e^-4	0.827	INTERGENIC
2L	4830538	2L_4830538_SNP [dm3] 2L_4830538_SNP [dm6]	C	T	2.235e^-4	0.827	NON_SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	26106401	3R_26106401_SNP [dm3] 3R_30280679_SNP [dm6]	A	G	2.247e^-4	0.827	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12035817	3R_12035817_SNP [dm3] 3R_16210095_SNP [dm6]	T	A	2.254e^-4	0.827	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
2L	15773634	2L_15773634_SNP [dm3] 2L_15773634_SNP [dm6]	G	T	2.266e^-4	0.827	UPSTREAM CG31826 INTERGENIC	transposable element FlyBase
3R	19576063	3R_19576063_SNP [dm3] 3R_23750341_SNP [dm6]	T	C	2.277e^-4	0.827	SYNONYMOUS_CODING Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
2R	9366498	2R_9366498_SNP [dm3] 2R_13478993_SNP [dm6]	T	C	2.277e^-4	0.827	DOWNSTREAM CG43192 INTRON arr
2R	19062801	2R_19062801_SNP [dm3] 2R_23175278_SNP [dm6]	C	T	2.278e^-4	0.827	INTRON CG34371	TF binding site BDTNP1_TFBS_da
2L	15974463	2L_15974463_SNP [dm3] 2L_15974463_SNP [dm6]	A	G	2.280e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15918388	3L_15918388_SNP [dm3] 3L_15925288_SNP [dm6]	C	T	2.285e^-4	0.827	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18694762	3L_18694762_SNP [dm3] 3L_18701662_SNP [dm6]	C	G	2.285e^-4	0.827	INTERGENIC
3R	15392212	3R_15392212_SNP [dm3] 3R_19566490_SNP [dm6]	G	A	2.297e^-4	0.827	INTRON Dys
X	10940847	X_10940847_SNP [dm3] X_11046814_SNP [dm6]	T	A	2.302e^-4	0.827	INTRON CG11160
3L	14585249	3L_14585249_SNP [dm3] 3L_14592149_SNP [dm6]	A	C	2.307e^-4	0.827	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13950592	3L_13950592_SNP [dm3] 3L_13957492_SNP [dm6]	A	C	2.314e^-4	0.827	INTRON CG32137	TF binding site mE1_TFBS_inv
2R	9440467	2R_9440467_SNP [dm3] 2R_13552962_SNP [dm6]	A	T	2.319e^-4	0.827	UPSTREAM CG33156 INTRON CG33156
2R	8610760	2R_8610760_SNP [dm3] 2R_12723255_SNP [dm6]	C	T	2.319e^-4	0.827	INTRON CG42663
3R	17358546	3R_17358546_SNP [dm3] 3R_21532824_SNP [dm6]	A	G	2.330e^-4	0.827	INTRON CR43372
3L	8373599	3L_8373599_DEL [dm3] 3L_8380499_DEL [dm6]	GAACGTTG	G	2.342e^-4	0.827	DOWNSTREAM ImpE1 INTRON ImpE1
3R	26672956	3R_26672956_SNP [dm3] 3R_30847234_SNP [dm6]	C	G	2.344e^-4	0.827	INTERGENIC
2R	5357295	2R_5357295_SNP [dm3] 2R_9469790_SNP [dm6]	C	T	2.346e^-4	0.827	INTRON Camta
2R	14603142	2R_14603142_SNP [dm3] 2R_18715637_SNP [dm6]	C	T	2.349e^-4	0.827	INTERGENIC
3L	14330069	3L_14330069_SNP [dm3] 3L_14336969_SNP [dm6]	A	G	2.359e^-4	0.827	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3368550	3L_3368550_SNP [dm3] 3L_3368550_SNP [dm6]	A	T	2.361e^-4	0.827	DOWNSTREAM kst INTERGENIC
3R	24058389	3R_24058389_SNP [dm3] 3R_28232667_SNP [dm6]	T	C	2.369e^-4	0.827	INTRON CG34354
2R	9440448	2R_9440448_DEL [dm3] 2R_13552943_DEL [dm6]	TTACTATGTTT...	T	2.371e^-4	0.827	UPSTREAM CG33156 INTRON CG33156
X	13201513	X_13201513_SNP [dm3] X_13307480_SNP [dm6]	C	T	2.372e^-4	0.827	DOWNSTREAM CR45018 INTRON IP3K2 EXON CR45018
3L	5219143	3L_5219143_SNP [dm3] 3L_5226043_SNP [dm6]	T	A	2.375e^-4	0.827	INTRON shep
3R	11863605	3R_11863605_SNP [dm3] 3R_16037883_SNP [dm6]	C	A	2.380e^-4	0.827	INTRON pnr	TF binding site BDTNP1_TFBS_dl
2L	4267737	2L_4267737_SNP [dm3] 2L_4267737_SNP [dm6]	T	A	2.385e^-4	0.827	INTERGENIC
3R	23887026	3R_23887026_SNP [dm3] 3R_28061304_SNP [dm6]	A	T	2.389e^-4	0.827	INTRON CG34362
3L	3919516	3L_3919516_SNP [dm3] 3L_3919516_SNP [dm6]	T	G	2.390e^-4	0.827	INTRON Eip63F-1
2L	7544084	2L_7544084_SNP [dm3] 2L_7544084_SNP [dm6]	T	C	2.392e^-4	0.827	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14294819	2R_14294819_SNP [dm3] 2R_18407314_SNP [dm6]	C	T	2.394e^-4	0.827	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4219035	2L_4219035_SNP [dm3] 2L_4219035_SNP [dm6]	A	T	2.409e^-4	0.827	INTRON ft	TF binding site mE1_TFBS_HSA
2R	5508910	2R_5508910_SNP [dm3] 2R_9621405_SNP [dm6]	C	A	2.411e^-4	0.827	UPSTREAM mir-307a DOWNSTREAM mir-307b INTRON Mmp2
X	10317901	X_10317901_SNP [dm3] X_10423868_SNP [dm6]	C	G	2.414e^-4	0.827	INTRON CG32683
3R	25683518	3R_25683518_SNP [dm3] 3R_29857796_SNP [dm6]	C	T	2.420e^-4	0.827	SYNONYMOUS_CODING CG7824 UPSTREAM dgt1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	3173930	X_3173930_SNP [dm3] X_3279897_SNP [dm6]	A	T	2.432e^-4	0.827	INTRON dnc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17029522	2L_17029522_SNP [dm3] 2L_17029522_SNP [dm6]	T	C	2.438e^-4	0.827	INTERGENIC
3R	12365045	3R_12365045_SNP [dm3] 3R_16539323_SNP [dm6]	T	C	2.440e^-4	0.827	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17938057	3R_17938057_SNP [dm3] 3R_22112335_SNP [dm6]	T	C	2.441e^-4	0.827	INTERGENIC
2L	20973011	2L_20973011_SNP [dm3] 2L_20973011_SNP [dm6]	T	C	2.442e^-4	0.827	INTRON CG42238
2L	14772834	2L_14772834_SNP [dm3] 2L_14772834_SNP [dm6]	G	T	2.444e^-4	0.827	DOWNSTREAM CG4650 INTERGENIC
2R	8787400	2R_8787400_SNP [dm3] 2R_12899895_SNP [dm6]	A	G	2.445e^-4	0.827	DOWNSTREAM vg INTERGENIC
3L	9557206	3L_9557206_SNP [dm3] 3L_9564106_SNP [dm6]	A	C	2.446e^-4	0.827	INTRON CG42673
2R	1622111	2R_1622111_SNP [dm3] 2R_5734606_SNP [dm6]	C	A	2.447e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	20848744	3R_20848744_SNP [dm3] 3R_25023022_SNP [dm6]	T	C	2.449e^-4	0.827	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	13102825	3R_13102825_SNP [dm3] 3R_17277103_SNP [dm6]	T	C	2.451e^-4	0.827	INTERGENIC
X	9498983	X_9498983_SNP [dm3] X_9604950_SNP [dm6]	C	G	2.454e^-4	0.827	SYNONYMOUS_CODING Lst8 DOWNSTREAM Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	16183723	2R_16183723_SNP [dm3] 2R_20296218_SNP [dm6]	A	G	2.461e^-4	0.827	INTERGENIC
3R	17285321	3R_17285321_SNP [dm3] 3R_21459599_SNP [dm6]	A	G	2.462e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6513772	X_6513772_SNP [dm3] X_6619739_SNP [dm6]	T	G	2.462e^-4	0.827	INTRON pigs
2R	13808578	2R_13808578_SNP [dm3] 2R_17921073_SNP [dm6]	C	T	2.465e^-4	0.827	INTRON Elk
3R	1946747	3R_1946747_SNP [dm3] 3R_6121025_SNP [dm6]	T	C	2.473e^-4	0.827	INTERGENIC
X	12605740	X_12605740_SNP [dm3] X_12711707_SNP [dm6]	A	G	2.474e^-4	0.827	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo
X	13202601	X_13202601_SNP [dm3] X_13308568_SNP [dm6]	A	T	2.477e^-4	0.827	DOWNSTREAM CR45018 INTRON IP3K2
2L	4865748	2L_4865748_SNP [dm3] 2L_4865748_SNP [dm6]	C	T	2.477e^-4	0.827	NON_SYNONYMOUS_CODING pog	TF binding site mE1_TFBS_inv
2R	15543403	2R_15543403_SNP [dm3] 2R_19655898_SNP [dm6]	G	A	2.478e^-4	0.827	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	14603259	2R_14603259_SNP [dm3] 2R_18715754_SNP [dm6]	A	G	2.478e^-4	0.827	INTERGENIC
2L	13947331	2L_13947331_SNP [dm3] 2L_13947331_SNP [dm6]	C	A	2.480e^-4	0.827	INTRON Ance-3 & 1 other
2L	20297240	2L_20297240_DEL [dm3] 2L_20297240_DEL [dm6]	CCCTGTGCC	A	2.482e^-4	0.827	EXON CR43414
X	17050193	X_17050193_SNP [dm3] X_17156160_SNP [dm6]	A	T	2.486e^-4	0.827	SYNONYMOUS_CODING xmas-2
3R	9434032	3R_9434032_SNP [dm3] 3R_13608310_SNP [dm6]	A	C	2.493e^-4	0.827	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
2R	18102964	2R_18102964_SNP [dm3] 2R_22215459_SNP [dm6]	T	G	2.495e^-4	0.827	SYNONYMOUS_CODING ari-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3619765	X_3619765_SNP [dm3] X_3725732_SNP [dm6]	T	A	2.496e^-4	0.827	INTRON tlk	TF binding site mE1_TFBS_bab1
2R	5449502	2R_5449502_INS [dm3] 2R_9561997_INS [dm6]	G	GGTAATG	2.499e^-4	0.827	DOWNSTREAM Or45b INTRON CG1809 EXON CR45281
3R	2462237	3R_2462237_SNP [dm3] 3R_6636515_SNP [dm6]	A	G	2.502e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12985314	2L_12985314_SNP [dm3] 2L_12985314_SNP [dm6]	A	G	2.505e^-4	0.827	INTERGENIC
2R	4261603	2R_4261603_SNP [dm3] 2R_8374098_SNP [dm6]	A	T	2.508e^-4	0.827	INTRON pdm3
2L	17313919	2L_17313919_SNP [dm3] 2L_17313919_SNP [dm6]	G	C	2.511e^-4	0.827	INTERGENIC
2L	14933047	2L_14933047_SNP [dm3] 2L_14933047_SNP [dm6]	C	A	2.516e^-4	0.827	INTRON CG42313
3R	13789170	3R_13789170_SNP [dm3] 3R_17963448_SNP [dm6]	A	G	2.519e^-4	0.827	INTRON cpo
2R	4233743	2R_4233743_SNP [dm3] 2R_8346238_SNP [dm6]	C	A	2.521e^-4	0.827	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	13669646	3R_13669646_SNP [dm3] 3R_17843924_SNP [dm6]	A	T	2.523e^-4	0.827	INTRON tinc
X	3482918	X_3482918_SNP [dm3] X_3588885_SNP [dm6]	T	C	2.525e^-4	0.827	INTRON AstA-R1
3L	1360335	3L_1360335_SNP [dm3] 3L_1360335_SNP [dm6]	G	T	2.530e^-4	0.827	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2654656	2L_2654656_SNP [dm3] 2L_2654656_SNP [dm6]	G	A	2.532e^-4	0.827	NON_SYNONYMOUS_CODING Or23a UPSTREAM Prosbeta4R2 DOWNSTREAM Prosbeta4R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2688528	3L_2688528_SNP [dm3] 3L_2688528_SNP [dm6]	C	T	2.538e^-4	0.827	INTRON Fife
2R	20932641	2R_20932641_SNP [dm3] 2R_25045118_SNP [dm6]	G	A	2.541e^-4	0.827	INTRON gsb-n	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	14088290	2L_14088290_SNP [dm3] 2L_14088290_SNP [dm6]	A	C	2.541e^-4	0.827	INTRON nAChRalpha5
2L	13682311	2L_13682311_SNP [dm3] 2L_13682311_SNP [dm6]	T	C	2.544e^-4	0.827	INTRON CG31814
3R	20030460	3R_20030460_SNP [dm3] 3R_24204738_SNP [dm6]	C	T	2.546e^-4	0.827	INTRON twin
2R	17071492	2R_17071492_SNP [dm3] 2R_21183987_SNP [dm6]	G	T	2.558e^-4	0.827	INTRON tud	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14772379	2L_14772379_INS [dm3] 2L_14772379_INS [dm6]	G	TT	2.566e^-4	0.827	INTERGENIC
3R	1532218	3R_1532218_SNP [dm3] 3R_5706496_SNP [dm6]	T	C	2.567e^-4	0.827	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22442521	3R_22442521_SNP [dm3] 3R_26616799_SNP [dm6]	C	T	2.567e^-4	0.827	INTERGENIC
3L	7527272	3L_7527272_SNP [dm3] 3L_7534172_SNP [dm6]	A	G	2.567e^-4	0.827	SPLICE_SITE_REGION lqf INTRON lqf	TF binding site mE1_TFBS_chinmo
2L	16023218	2L_16023218_SNP [dm3] 2L_16023218_SNP [dm6]	C	T	2.567e^-4	0.827	INTRON beat-Ic
3L	10202917	3L_10202917_SNP [dm3] 3L_10209817_SNP [dm6]	C	T	2.577e^-4	0.827	INTERGENIC
2L	8042138	2L_8042138_SNP [dm3] 2L_8042138_SNP [dm6]	T	A	2.577e^-4	0.827	DOWNSTREAM snoRNA:Psi28S-2648 & 1 other INTRON RpL36A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	19414867	2L_19414867_SNP [dm3] 2L_19414867_SNP [dm6]	A	C	2.582e^-4	0.827	UPSTREAM Pax INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3979995	2L_3979995_SNP [dm3] 2L_3979995_SNP [dm6]	A	G	2.583e^-4	0.827	INTRON fred
3L	3025864	3L_3025864_SNP [dm3] 3L_3025864_SNP [dm6]	G	C	2.593e^-4	0.827	SYNONYMOUS_CODING aly	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	14438160	2L_14438160_SNP [dm3] 2L_14438160_SNP [dm6]	C	T	2.601e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11686137	2R_11686137_SNP [dm3] 2R_15798632_SNP [dm6]	C	T	2.612e^-4	0.827	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20859526	X_20859526_SNP [dm3] X_20988499_SNP [dm6]	C	A	2.622e^-4	0.827	INTERGENIC
2L	12555958	2L_12555958_INS [dm3] 2L_12555958_INS [dm6]	A	ACAATA	2.624e^-4	0.827	INTERGENIC
3L	7718150	3L_7718150_SNP [dm3] 3L_7725050_SNP [dm6]	G	A	2.628e^-4	0.827	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15773630	2L_15773630_SNP [dm3] 2L_15773630_SNP [dm6]	A	C	2.631e^-4	0.827	UPSTREAM CG31826 INTERGENIC	transposable element FlyBase
2R	18098061	2R_18098061_SNP [dm3] 2R_22210556_SNP [dm6]	G	T	2.643e^-4	0.827	SYNONYMOUS_CODING CG3264 UPSTREAM CG11291
2L	15773632	2L_15773632_SNP [dm3] 2L_15773632_SNP [dm6]	T	A	2.645e^-4	0.827	UPSTREAM CG31826 INTERGENIC	transposable element FlyBase
X	9822534	X_9822534_SNP [dm3] X_9928501_SNP [dm6]	A	G	2.657e^-4	0.827	SYNONYMOUS_CODING Idgf4
2L	7207472	2L_7207472_SNP [dm3] 2L_7207472_SNP [dm6]	T	G	2.658e^-4	0.827	NON_SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
X	21292599	X_21292599_SNP [dm3] X_21421572_SNP [dm6]	C	T	2.661e^-4	0.827	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
2R	6508172	2R_6508172_SNP [dm3] 2R_10620667_SNP [dm6]	T	C	2.662e^-4	0.827	INTRON CG11883
2L	8024677	2L_8024677_SNP [dm3] 2L_8024677_SNP [dm6]	A	T	2.662e^-4	0.827	SYNONYMOUS_CODING Tg	TF binding site mE1_TFBS_sens
3L	2002059	3L_2002059_SNP [dm3] 3L_2002059_SNP [dm6]	T	C	2.663e^-4	0.827	INTERGENIC
3L	16266717	3L_16266717_SNP [dm3] 3L_16273617_SNP [dm6]	G	C	2.671e^-4	0.827	DOWNSTREAM CG13066 INTERGENIC
X	2292086	X_2292086_SNP [dm3] X_2398053_SNP [dm6]	A	G	2.672e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	6214377	2L_6214377_SNP [dm3] 2L_6214377_SNP [dm6]	T	C	2.676e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	16535496	3R_16535496_SNP [dm3] 3R_20709774_SNP [dm6]	G	T	2.677e^-4	0.827	INTRON Oamb
2L	4089708	2L_4089708_SNP [dm3] 2L_4089708_SNP [dm6]	G	A	2.681e^-4	0.827	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25674526	3R_25674526_DEL [dm3] 3R_29848804_DEL [dm6]	AA	A	2.681e^-4	0.827	INTRON Cad99C	TF binding site mE1_TFBS_cad
2R	16739764	2R_16739764_SNP [dm3] 2R_20852259_SNP [dm6]	A	G	2.684e^-4	0.827	UPSTREAM CG9993 INTERGENIC
2R	8609246	2R_8609246_INS [dm3] 2R_12721741_INS [dm6]	T	TT	2.689e^-4	0.827	INTRON CG42663
3R	13313442	3R_13313442_DEL [dm3] 3R_17487720_DEL [dm6]	AGTGCTTGCTT...	A	2.689e^-4	0.827	INTRON Dscam3
2R	9319406	2R_9319406_SNP [dm3] 2R_13431901_SNP [dm6]	T	G	2.697e^-4	0.827	UPSTREAM tRNA:I:49Fe & 1 other DOWNSTREAM tRNA:I:49Fb & 2 others INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4210881	2L_4210881_SNP [dm3] 2L_4210881_SNP [dm6]	C	T	2.699e^-4	0.827	INTRON ft
2L	7615262	2L_7615262_SNP [dm3] 2L_7615262_SNP [dm6]	A	T	2.702e^-4	0.827	NON_SYNONYMOUS_CODING CG6739
3R	23543555	3R_23543555_SNP [dm3] 3R_27717833_SNP [dm6]	T	G	2.704e^-4	0.827	INTERGENIC
2L	14067057	2L_14067057_SNP [dm3] 2L_14067057_SNP [dm6]	T	G	2.707e^-4	0.827	INTRON nAChRalpha5
3R	25432710	3R_25432710_DEL [dm3] 3R_29606988_DEL [dm6]	TCGGCATATCCCCGTGCCAG...	T	2.713e^-4	0.827	INTRON alph
3R	25512537	3R_25512537_SNP [dm3] 3R_29686815_SNP [dm6]	T	G	2.724e^-4	0.827	UPSTREAM Obp99c INTRON Obp99c
X	21225037	X_21225037_SNP [dm3] X_21354010_SNP [dm6]	C	A	2.729e^-4	0.827	INTRON sol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8273778	2L_8273778_SNP [dm3] 2L_8273778_SNP [dm6]	A	G	2.731e^-4	0.827	UTR_5_PRIME Btk29A INTRON Btk29A
3L	11265572	3L_11265572_SNP [dm3] 3L_11272472_SNP [dm6]	T	C	2.738e^-4	0.827	INTERGENIC
2R	8610793	2R_8610793_SNP [dm3] 2R_12723288_SNP [dm6]	A	T	2.746e^-4	0.827	INTRON CG42663
2R	18943171	2R_18943171_SNP [dm3] 2R_23055648_SNP [dm6]	C	A	2.750e^-4	0.827	UTR_5_PRIME CG44252 INTRON CG44252
3R	19185894	3R_19185894_SNP [dm3] 3R_23360172_SNP [dm6]	C	A	2.751e^-4	0.827	UTR_3_PRIME RpS3 DOWNSTREAM RpS3	TF binding site BDTNP1_TFBS_twi
2R	12063082	2R_12063082_SNP [dm3] 2R_16175577_SNP [dm6]	G	A	2.762e^-4	0.827	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
3R	26673717	3R_26673717_SNP [dm3] 3R_30847995_SNP [dm6]	G	A	2.764e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs
2L	8060043	2L_8060043_SNP [dm3] 2L_8060043_SNP [dm6]	C	T	2.767e^-4	0.827	SYNONYMOUS_CODING poe
2R	8370917	2R_8370917_SNP [dm3] 2R_12483412_SNP [dm6]	C	G	2.767e^-4	0.827	INTRON Dh44-R2
2L	13901290	2L_13901290_SNP [dm3] 2L_13901290_SNP [dm6]	G	A	2.771e^-4	0.827	SYNONYMOUS_CODING Smg5
3R	19511874	3R_19511874_SNP [dm3] 3R_23686152_SNP [dm6]	T	A	2.772e^-4	0.827	UTR_3_PRIME CG18754 UPSTREAM SPE DOWNSTREAM CG18754
3L	13056569	3L_13056569_SNP [dm3] 3L_13063469_SNP [dm6]	C	T	2.788e^-4	0.827	SYNONYMOUS_CODING CG34429 DOWNSTREAM CG34428
3R	1890925	3R_1890925_SNP [dm3] 3R_6065203_SNP [dm6]	C	G	2.801e^-4	0.827	INTERGENIC
3R	13313458	3R_13313458_SNP [dm3] 3R_17487736_SNP [dm6]	T	A	2.810e^-4	0.827	INTRON Dscam3
2L	13327485	2L_13327485_SNP [dm3] 2L_13327485_SNP [dm6]	A	G	2.812e^-4	0.827	INTRON CG43778
2R	7377961	2R_7377961_INS [dm3] 2R_11490456_INS [dm6]	G	GTGAG	2.815e^-4	0.827	INTRON inv
X	13088651	X_13088651_SNP [dm3] X_13194618_SNP [dm6]	C	T	2.815e^-4	0.827	UPSTREAM CG2453 DOWNSTREAM sno INTERGENIC
2L	18587355	2L_18587355_SNP [dm3] 2L_18587355_SNP [dm6]	G	A	2.823e^-4	0.827	INTRON Pde11
2L	4835158	2L_4835158_SNP [dm3] 2L_4835158_SNP [dm6]	T	C	2.825e^-4	0.827	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	3325331	2L_3325331_SNP [dm3] 2L_3325331_SNP [dm6]	G	A	2.825e^-4	0.827	SYNONYMOUS_CODING CG33281
3L	10402865	3L_10402865_SNP [dm3] 3L_10409765_SNP [dm6]	T	C	2.825e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6715342	2L_6715342_SNP [dm3] 2L_6715342_SNP [dm6]	T	C	2.831e^-4	0.827	INTRON AkhR
2R	8811305	2R_8811305_SNP [dm3] 2R_12923800_SNP [dm6]	T	A	2.832e^-4	0.827	UPSTREAM CG13319 & 1 other DOWNSTREAM NAT1 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11147936	2L_11147936_SNP [dm3] 2L_11147936_SNP [dm6]	A	T	2.844e^-4	0.827	INTRON Gyc32E
3L	10543806	3L_10543806_DEL [dm3] 3L_10550706_DEL [dm6]	AA	A	2.846e^-4	0.827	INTRON A2bp1
2L	4267738	2L_4267738_SNP [dm3] 2L_4267738_SNP [dm6]	T	G	2.858e^-4	0.827	INTERGENIC
3R	23012468	3R_23012468_INS [dm3] 3R_27186746_INS [dm6]	A	AA	2.872e^-4	0.827	INTRON Ser	regulatory region REDfly_CRMs
2R	11686176	2R_11686176_SNP [dm3] 2R_15798671_SNP [dm6]	A	C	2.874e^-4	0.827	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15938302	3L_15938302_SNP [dm3] 3L_15945202_SNP [dm6]	G	C	2.877e^-4	0.827	INTRON Pka-C3	TF binding site mE1_TFBS_ttk
3L	13406966	3L_13406966_SNP [dm3] 3L_13413866_SNP [dm6]	A	G	2.883e^-4	0.827	INTRON flr
2L	4323987	2L_4323987_SNP [dm3] 2L_4323987_SNP [dm6]	A	G	2.892e^-4	0.827	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC
2R	3772050	2R_3772050_SNP [dm3] 2R_7884545_SNP [dm6]	G	A	2.894e^-4	0.827	INTRON Dgk
2L	8081332	2L_8081332_DEL [dm3] 2L_8081332_DEL [dm6]	CAAACCAC	C	2.896e^-4	0.827	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20061398	3L_20061398_SNP [dm3] 3L_20068298_SNP [dm6]	G	T	2.896e^-4	0.827	INTRON sNPF-R
3R	6122617	3R_6122617_SNP [dm3] 3R_10296895_SNP [dm6]	C	G	2.897e^-4	0.827	NON_SYNONYMOUS_CODING CG43143
X	13212184	X_13212184_SNP [dm3] X_13318151_SNP [dm6]	T	G	2.914e^-4	0.827	INTRON IP3K2
3R	19581648	3R_19581648_SNP [dm3] 3R_23755926_SNP [dm6]	A	G	2.920e^-4	0.827	INTRON Hrd3
3R	19581651	3R_19581651_SNP [dm3] 3R_23755929_SNP [dm6]	A	T	2.931e^-4	0.827	INTRON Hrd3
2R	5584574	2R_5584574_SNP [dm3] 2R_9697069_SNP [dm6]	T	A	2.937e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	17773334	2L_17773334_INS [dm3] 2L_17773334_INS [dm6]	A	AAGCTGA	2.943e^-4	0.827	INTRON CadN
3R	14832720	3R_14832720_SNP [dm3] 3R_19006998_SNP [dm6]	A	G	2.943e^-4	0.827	INTRON gukh
3L	16421447	3L_16421447_SNP [dm3] 3L_16428347_SNP [dm6]	G	A	2.958e^-4	0.827	INTRON CG33158 & 1 other
2L	13964640	2L_13964640_SNP [dm3] 2L_13964640_SNP [dm6]	C	T	2.968e^-4	0.827	SYNONYMOUS_CODING NimB1 DOWNSTREAM NimB2	TF binding site mE1_TFBS_chinmo
2R	10861590	2R_10861590_SNP [dm3] 2R_14974085_SNP [dm6]	T	C	2.975e^-4	0.827	INTRON ckn	TF binding site BDTNP1_TFBS_dl
2R	14217081	2R_14217081_SNP [dm3] 2R_18329576_SNP [dm6]	C	T	2.975e^-4	0.827	INTRON sbb
3L	18030714	3L_18030714_SNP [dm3] 3L_18037614_SNP [dm6]	T	G	2.988e^-4	0.827	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13210507	X_13210507_SNP [dm3] X_13316474_SNP [dm6]	G	A	2.997e^-4	0.827	INTRON IP3K2
2R	9318160	2R_9318160_SNP [dm3] 2R_13430655_SNP [dm6]	C	T	2.998e^-4	0.827	UPSTREAM CG42321 & 3 others DOWNSTREAM tRNA:L3:49Fa INTRON CG42321	TF binding site BDTNP1_TFBS_dl
X	8432726	X_8432726_SNP [dm3] X_8538693_SNP [dm6]	C	T	3.002e^-4	0.827	INTRON Nrg
3R	22443152	3R_22443152_SNP [dm3] 3R_26617430_SNP [dm6]	T	C	3.010e^-4	0.827	INTERGENIC
2R	16224217	2R_16224217_SNP [dm3] 2R_20336712_SNP [dm6]	G	T	3.010e^-4	0.827	INTERGENIC
3L	16176309	3L_16176309_SNP [dm3] 3L_16183209_SNP [dm6]	A	G	3.024e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13793931	3R_13793931_SNP [dm3] 3R_17968209_SNP [dm6]	C	T	3.047e^-4	0.827	INTRON cpo
3R	19002136	3R_19002136_SNP [dm3] 3R_23176414_SNP [dm6]	G	T	3.051e^-4	0.827	INTRON Irk1
2L	16037017	2L_16037017_SNP [dm3] 2L_16037017_SNP [dm6]	G	C	3.051e^-4	0.827	INTRON beat-Ic	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15997966	2L_15997966_SNP [dm3] 2L_15997966_SNP [dm6]	G	A	3.055e^-4	0.827	INTERGENIC
2R	1729536	2R_1729536_SNP [dm3] 2R_5842031_SNP [dm6]	C	A	3.059e^-4	0.827	INTRON dpr12
2L	19912120	2L_19912120_SNP [dm3] 2L_19912120_SNP [dm6]	A	T	3.080e^-4	0.827	NON_SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick
2L	13149389	2L_13149389_SNP [dm3] 2L_13149389_SNP [dm6]	A	T	3.088e^-4	0.827	INTERGENIC
2R	6919181	2R_6919181_SNP [dm3] 2R_11031676_SNP [dm6]	C	T	3.089e^-4	0.827	INTRON luna
X	8050011	X_8050011_SNP [dm3] X_8155978_SNP [dm6]	C	T	3.091e^-4	0.827	SYNONYMOUS_CODING Traf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5903507	2L_5903507_INS [dm3] 2L_5903507_INS [dm6]	A	AAACTCAAAGGTTGCCTGAG...	3.092e^-4	0.827	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11076127	2L_11076127_INS [dm3] 2L_11076127_INS [dm6]	C	CTTTAAAGGAAT...	3.093e^-4	0.827	DOWNSTREAM AstC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	14772415	2L_14772415_DEL [dm3] 2L_14772415_DEL [dm6]	AACGTCCCA	A	3.098e^-4	0.827	INTERGENIC
2R	17929579	2R_17929579_SNP [dm3] 2R_22042074_SNP [dm6]	G	A	3.099e^-4	0.827	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16561897	2R_16561897_SNP [dm3] 2R_20674392_SNP [dm6]	T	C	3.103e^-4	0.827	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18402744	X_18402744_SNP [dm3] X_18508711_SNP [dm6]	A	T	3.105e^-4	0.827	INTRON Ggt-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc
3R	26610318	3R_26610318_SNP [dm3] 3R_30784596_SNP [dm6]	T	G	3.118e^-4	0.827	NON_SYNONYMOUS_CODING zfh1 UPSTREAM CR45189	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8101454	3L_8101454_SNP [dm3] 3L_8108354_SNP [dm6]	C	A	3.119e^-4	0.827	UTR_3_PRIME Ect4 UPSTREAM fan INTRON Ect4
3R	14842998	3R_14842998_SNP [dm3] 3R_19017276_SNP [dm6]	C	T	3.122e^-4	0.827	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22983336	3R_22983336_SNP [dm3] 3R_27157614_SNP [dm6]	G	C	3.122e^-4	0.827	UPSTREAM grass DOWNSTREAM Men-b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14763121	X_14763121_SNP [dm3] X_14869088_SNP [dm6]	C	T	3.127e^-4	0.827	INTRON Flo2 & 1 other
2L	10887511	2L_10887511_SNP [dm3] 2L_10887511_SNP [dm6]	G	C	3.138e^-4	0.827	DOWNSTREAM CG14071 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	22932809	3R_22932809_SNP [dm3] 3R_27107087_SNP [dm6]	T	C	3.140e^-4	0.827	UPSTREAM CG6074 INTERGENIC
3R	26746722	3R_26746722_SNP [dm3] 3R_30921000_SNP [dm6]	T	C	3.143e^-4	0.827	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	18014325	3R_18014325_SNP [dm3] 3R_22188603_SNP [dm6]	A	G	3.149e^-4	0.827	INTRON SKIP
2L	15748948	2L_15748948_SNP [dm3] 2L_15748948_SNP [dm6]	G	T	3.153e^-4	0.827	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
2L	9387970	2L_9387970_SNP [dm3] 2L_9387970_SNP [dm6]	G	A	3.160e^-4	0.827	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4267722	2L_4267722_DEL [dm3] 2L_4267722_DEL [dm6]	AGTATAACTTTATA...	A	3.165e^-4	0.827	INTERGENIC
3L	3804882	3L_3804882_SNP [dm3] 3L_3804882_SNP [dm6]	T	C	3.173e^-4	0.827	INTRON CG32264 & 1 other
2R	18100738	2R_18100738_SNP [dm3] 2R_22213233_SNP [dm6]	T	A	3.174e^-4	0.827	UTR_5_PRIME ari-2 DOWNSTREAM CG11291	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18874110	3L_18874110_SNP [dm3] 3L_18881010_SNP [dm6]	T	G	3.179e^-4	0.827	INTRON CG3961	TF binding site mE1_TFBS_cad
3L	10402986	3L_10402986_SNP [dm3] 3L_10409886_SNP [dm6]	G	C	3.181e^-4	0.827	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17620967	3L_17620967_SNP [dm3] 3L_17627867_SNP [dm6]	G	A	3.183e^-4	0.827	SPLICE_SITE_REGION CG7510 SYNONYMOUS_CODING CG7510 UPSTREAM scaRNA:MeU4-A65
X	8050050	X_8050050_SNP [dm3] X_8156017_SNP [dm6]	C	T	3.184e^-4	0.827	SYNONYMOUS_CODING Traf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2440110	3L_2440110_SNP [dm3] 3L_2440110_SNP [dm6]	A	T	3.187e^-4	0.827	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23106534	3R_23106534_SNP [dm3] 3R_27280812_SNP [dm6]	A	G	3.193e^-4	0.827	UPSTREAM mrt INTRON mrt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25402434	3R_25402434_SNP [dm3] 3R_29576712_SNP [dm6]	T	A	3.196e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	9338528	3R_9338528_SNP [dm3] 3R_13512806_SNP [dm6]	A	G	3.197e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9162022	2L_9162022_INS [dm3] 2L_9162022_INS [dm6]	AA	TCTT	3.198e^-4	0.827	INTRON CG32982
3R	9958113	3R_9958113_INS [dm3] 3R_14132391_INS [dm6]	T	TATAATATA	3.218e^-4	0.827	UPSTREAM CG14356 INTERGENIC
3R	23105999	3R_23105999_SNP [dm3] 3R_27280277_SNP [dm6]	C	A	3.219e^-4	0.827	INTRON mrt
3L	16176520	3L_16176520_SNP [dm3] 3L_16183420_SNP [dm6]	G	T	3.221e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4834150	2L_4834150_SNP [dm3] 2L_4834150_SNP [dm6]	C	T	3.222e^-4	0.827	SYNONYMOUS_CODING Ir25a
2L	4835148	2L_4835148_SNP [dm3] 2L_4835148_SNP [dm6]	A	T	3.222e^-4	0.827	UTR_5_PRIME Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
3L	16276301	3L_16276301_SNP [dm3] 3L_16283201_SNP [dm6]	A	G	3.224e^-4	0.827	NON_SYNONYMOUS_CODING CG13048
3R	21268751	3R_21268751_DEL [dm3] 3R_25443029_DEL [dm6]	TCCG	T	3.226e^-4	0.827	INTRON Fur1
3R	19583986	3R_19583986_SNP [dm3] 3R_23758264_SNP [dm6]	T	A	3.227e^-4	0.827	UPSTREAM Plip & 1 other INTRON Hrd3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	16104266	3R_16104266_SNP [dm3] 3R_20278544_SNP [dm6]	C	G	3.228e^-4	0.827	INTRON cic	TF binding site mE1_TFBS_inv
3R	21468782	3R_21468782_INS [dm3] 3R_25643060_INS [dm6]	T	TT	3.231e^-4	0.827	INTRON jigr1
2R	3643641	2R_3643641_SNP [dm3] 2R_7756136_SNP [dm6]	G	A	3.238e^-4	0.827	INTRON CG30497 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13102848	3R_13102848_SNP [dm3] 3R_17277126_SNP [dm6]	C	A	3.253e^-4	0.827	INTERGENIC
X	14763129	X_14763129_DEL [dm3] X_14869096_DEL [dm6]	AA	A	3.255e^-4	0.827	INTRON Flo2 & 1 other
3R	17939862	3R_17939862_SNP [dm3] 3R_22114140_SNP [dm6]	T	A	3.258e^-4	0.827	SYNONYMOUS_CODING Ir94a
X	10940840	X_10940840_INS [dm3] X_11046807_INS [dm6]	A	ACTTGGAAA	3.259e^-4	0.827	INTRON CG11160
2L	17004740	2L_17004740_SNP [dm3] 2L_17004740_SNP [dm6]	G	A	3.261e^-4	0.827	INTERGENIC
3R	17358551	3R_17358551_SNP [dm3] 3R_21532829_SNP [dm6]	A	C	3.263e^-4	0.827	INTRON CR43372
3R	11022815	3R_11022815_SNP [dm3] 3R_15197093_SNP [dm6]	G	A	3.274e^-4	0.827	UTR_5_PRIME CG42542 UPSTREAM CG6752 INTRON CG42542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
3R	19584653	3R_19584653_SNP [dm3] 3R_23758931_SNP [dm6]	A	G	3.275e^-4	0.827	UPSTREAM Hrd3 DOWNSTREAM CG10219 INTRON Plip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4831728	2L_4831728_SNP [dm3] 2L_4831728_SNP [dm6]	C	T	3.283e^-4	0.827	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9566266	2L_9566266_SNP [dm3] 2L_9566266_SNP [dm6]	T	A	3.307e^-4	0.827	UPSTREAM jp INTRON jp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	19035711	2R_19035711_SNP [dm3] 2R_23148188_SNP [dm6]	C	T	3.312e^-4	0.827	INTERGENIC
2L	4219040	2L_4219040_SNP [dm3] 2L_4219040_SNP [dm6]	A	C	3.320e^-4	0.827	INTRON ft	TF binding site mE1_TFBS_HSA
3R	25468068	3R_25468068_SNP [dm3] 3R_29642346_SNP [dm6]	C	T	3.323e^-4	0.827	INTRON Dop1R2	TF binding site mE1_TFBS_cad
3R	17339941	3R_17339941_SNP [dm3] 3R_21514219_SNP [dm6]	T	G	3.330e^-4	0.827	INTERGENIC
2L	16621011	2L_16621011_SNP [dm3] 2L_16621011_SNP [dm6]	A	C	3.334e^-4	0.827	INTRON CG42389
3L	2692999	3L_2692999_SNP [dm3] 3L_2692999_SNP [dm6]	A	G	3.339e^-4	0.827	INTRON Fife
2L	2145405	2L_2145405_SNP [dm3] 2L_2145405_SNP [dm6]	T	A	3.339e^-4	0.827	UTR_3_PRIME CG11723 UPSTREAM tho2 DOWNSTREAM CG11723	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14238195	3R_14238195_SNP [dm3] 3R_18412473_SNP [dm6]	G	C	3.341e^-4	0.827	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17016761	2L_17016761_SNP [dm3] 2L_17016761_SNP [dm6]	C	A	3.346e^-4	0.827	DOWNSTREAM CR45462 INTERGENIC
2L	17016765	2L_17016765_DEL [dm3] 2L_17016765_DEL [dm6]	ATT	G	3.346e^-4	0.827	DOWNSTREAM CR45462 INTERGENIC
3R	17372926	3R_17372926_SNP [dm3] 3R_21547204_SNP [dm6]	A	T	3.347e^-4	0.827	INTERGENIC
2L	4884168	2L_4884168_SNP [dm3] 2L_4884168_SNP [dm6]	G	A	3.347e^-4	0.827	SYNONYMOUS_CODING CG3008	TF binding site mE1_TFBS_sens
2R	15060635	2R_15060635_INS [dm3] 2R_19173130_INS [dm6]	C	CGATATTTAACTTTCAGCTC...	3.347e^-4	0.827	INTRON CG10737
3L	10520147	3L_10520147_SNP [dm3] 3L_10527047_SNP [dm6]	G	T	3.349e^-4	0.827	INTRON A2bp1
X	10809307	X_10809307_SNP [dm3] X_10915274_SNP [dm6]	A	T	3.354e^-4	0.827	INTRON CG43901
2L	3396440	2L_3396440_SNP [dm3] 2L_3396440_SNP [dm6]	G	A	3.356e^-4	0.827	DOWNSTREAM CR44792 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19401066	3L_19401066_SNP [dm3] 3L_19407966_SNP [dm6]	T	C	3.360e^-4	0.827	INTRON CG32206
3R	12244317	3R_12244317_SNP [dm3] 3R_16418595_SNP [dm6]	C	T	3.361e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3444677	2L_3444677_SNP [dm3] 2L_3444677_SNP [dm6]	C	A	3.364e^-4	0.827	INTERGENIC
X	9780417	X_9780417_SNP [dm3] X_9886384_SNP [dm6]	T	C	3.368e^-4	0.827	INTERGENIC
3R	21328173	3R_21328173_SNP [dm3] 3R_25502451_SNP [dm6]	T	A	3.372e^-4	0.827	UPSTREAM CR43457 & 1 other INTRON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	17623664	3L_17623664_SNP [dm3] 3L_17630564_SNP [dm6]	G	T	3.379e^-4	0.827	UTR_3_PRIME CG7510 UPSTREAM CR44566 DOWNSTREAM CG7510
2R	20998696	2R_20998696_SNP [dm3] 2R_25111173_SNP [dm6]	G	A	3.382e^-4	0.827	INTRON lov	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10861591	2R_10861591_SNP [dm3] 2R_14974086_SNP [dm6]	G	A	3.384e^-4	0.827	INTRON ckn	TF binding site BDTNP1_TFBS_dl
3R	16036541	3R_16036541_SNP [dm3] 3R_20210819_SNP [dm6]	C	A	3.398e^-4	0.827	INTRON Nlg4
2L	19980553	2L_19980553_SNP [dm3] 2L_19980553_SNP [dm6]	G	A	3.401e^-4	0.827	DOWNSTREAM CR43620 INTRON CG43861
2L	15748943	2L_15748943_SNP [dm3] 2L_15748943_SNP [dm6]	C	G	3.405e^-4	0.827	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
X	19781425	X_19781425_SNP [dm3] X_19887392_SNP [dm6]	C	A	3.410e^-4	0.827	NON_SYNONYMOUS_CODING amn UTR_5_PRIME Hers INTRON Hers	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16049595	2L_16049595_SNP [dm3] 2L_16049595_SNP [dm6]	T	C	3.423e^-4	0.827	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11867912	X_11867912_SNP [dm3] X_11973879_SNP [dm6]	T	C	3.429e^-4	0.827	INTRON cac
2R	18108182	2R_18108182_SNP [dm3] 2R_22220677_SNP [dm6]	G	T	3.439e^-4	0.827	DOWNSTREAM Oatp58Db INTRON Oatp58Da
X	13199030	X_13199030_SNP [dm3] X_13304997_SNP [dm6]	C	T	3.442e^-4	0.827	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018
X	5395507	X_5395507_SNP [dm3] X_5501474_SNP [dm6]	C	G	3.445e^-4	0.827	UPSTREAM CG4151 & 1 other INTERGENIC
3R	10350180	3R_10350180_SNP [dm3] 3R_14524458_SNP [dm6]	G	C	3.445e^-4	0.827	INTRON Pde6
3R	20830577	3R_20830577_SNP [dm3] 3R_25004855_SNP [dm6]	A	T	3.453e^-4	0.827	INTRON tnc
3R	21624591	3R_21624591_SNP [dm3] 3R_25798869_SNP [dm6]	A	T	3.456e^-4	0.827	INTERGENIC
X	13201583	X_13201583_SNP [dm3] X_13307550_SNP [dm6]	C	T	3.460e^-4	0.827	DOWNSTREAM CR45018 INTRON IP3K2 EXON CR45018
2R	18117018	2R_18117018_SNP [dm3] 2R_22229513_SNP [dm6]	G	C	3.469e^-4	0.827	UPSTREAM Oatp58Dc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6702388	3R_6702388_SNP [dm3] 3R_10876666_SNP [dm6]	T	A	3.470e^-4	0.827	DOWNSTREAM CR45195 INTRON Sodh-2
3R	19177650	3R_19177650_SNP [dm3] 3R_23351928_SNP [dm6]	C	T	3.474e^-4	0.827	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
2L	17016580	2L_17016580_SNP [dm3] 2L_17016580_SNP [dm6]	C	A	3.483e^-4	0.827	INTERGENIC
2R	9602353	2R_9602353_SNP [dm3] 2R_13714848_SNP [dm6]	T	C	3.483e^-4	0.827	SYNONYMOUS_CODING fas
2L	4454083	2L_4454083_SNP [dm3] 2L_4454083_SNP [dm6]	A	G	3.487e^-4	0.827	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10395323	X_10395323_INS [dm3] X_10501290_INS [dm6]	A	AA	3.490e^-4	0.827	INTRON spri
3R	25951255	3R_25951255_DEL [dm3] 3R_30125533_DEL [dm6]	ACGCGTGAAACGTATTA...	A	3.494e^-4	0.827	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_inv
3L	13137172	3L_13137172_SNP [dm3] 3L_13144072_SNP [dm6]	T	C	3.494e^-4	0.827	INTERGENIC
2L	14068721	2L_14068721_SNP [dm3] 2L_14068721_SNP [dm6]	T	C	3.494e^-4	0.827	INTRON nAChRalpha5
2R	4163113	2R_4163113_SNP [dm3] 2R_8275608_SNP [dm6]	A	T	3.507e^-4	0.827	INTERGENIC
2L	8276074	2L_8276074_SNP [dm3] 2L_8276074_SNP [dm6]	T	C	3.510e^-4	0.827	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
3L	14585847	3L_14585847_SNP [dm3] 3L_14592747_SNP [dm6]	C	T	3.514e^-4	0.827	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	952151	2L_952151_SNP [dm3] 2L_952151_SNP [dm6]	T	G	3.514e^-4	0.827	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13102843	3R_13102843_DEL [dm3] 3R_17277121_DEL [dm6]	TATG	T	3.517e^-4	0.827	INTERGENIC
2L	3274929	2L_3274929_SNP [dm3] 2L_3274929_SNP [dm6]	T	A	3.522e^-4	0.827	DOWNSTREAM CG3332 INTERGENIC
3R	10326656	3R_10326656_SNP [dm3] 3R_14500934_SNP [dm6]	G	T	3.531e^-4	0.827	INTRON CR44177
2R	8441787	2R_8441787_SNP [dm3] 2R_12554282_SNP [dm6]	T	C	3.533e^-4	0.827	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3L	8211375	3L_8211375_SNP [dm3] 3L_8218275_SNP [dm6]	A	C	3.543e^-4	0.827	UTR_3_PRIME CG13674 DOWNSTREAM CG13674
3R	26612735	3R_26612735_INS [dm3] 3R_30787013_INS [dm6]	C	CA	3.550e^-4	0.827	UTR_3_PRIME zfh1
2L	9800185	2L_9800185_SNP [dm3] 2L_9800185_SNP [dm6]	T	A	3.563e^-4	0.827	INTRON nAChRalpha6
2L	9800206	2L_9800206_SNP [dm3] 2L_9800206_SNP [dm6]	G	A	3.563e^-4	0.827	INTRON nAChRalpha6
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	3.565e^-4	0.827	INTERGENIC
2R	16197171	2R_16197171_SNP [dm3] 2R_20309666_SNP [dm6]	G	A	3.568e^-4	0.827	SYNONYMOUS_CODING CG13868 UPSTREAM CG11200	TF binding site mE1_TFBS_cad
2L	16049596	2L_16049596_SNP [dm3] 2L_16049596_SNP [dm6]	A	T	3.573e^-4	0.827	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8834688	2R_8834688_SNP [dm3] 2R_12947183_SNP [dm6]	C	T	3.578e^-4	0.827	UPSTREAM Mdr49 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12035849	3R_12035849_SNP [dm3] 3R_16210127_SNP [dm6]	C	T	3.579e^-4	0.827	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
2R	18101570	2R_18101570_SNP [dm3] 2R_22214065_SNP [dm6]	C	T	3.583e^-4	0.827	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8746340	3L_8746340_SNP [dm3] 3L_8753240_SNP [dm6]	T	C	3.591e^-4	0.827	UPSTREAM Fhos INTERGENIC
3R	19144837	3R_19144837_SNP [dm3] 3R_23319115_SNP [dm6]	T	A	3.593e^-4	0.827	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7639519	X_7639519_INS [dm3] X_7745486_INS [dm6]	T	TGT	3.595e^-4	0.827	INTERGENIC
3L	13231487	3L_13231487_SNP [dm3] 3L_13238387_SNP [dm6]	A	C	3.599e^-4	0.827	INTRON caps
2L	19935835	2L_19935835_SNP [dm3] 2L_19935835_SNP [dm6]	G	A	3.604e^-4	0.827	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4824256	2L_4824256_SNP [dm3] 2L_4824256_SNP [dm6]	G	T	3.605e^-4	0.827	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13601091	2R_13601091_INS [dm3] 2R_17713586_INS [dm6]	GA	CCGTCGTACC	3.608e^-4	0.827	INTRON CG6424	TF binding site mE1_TFBS_sbb
2R	19054585	2R_19054585_SNP [dm3] 2R_23167062_SNP [dm6]	T	A	3.613e^-4	0.827	INTRON CG34371	TF binding site mE1_TFBS_HSA
2L	12376148	2L_12376148_SNP [dm3] 2L_12376148_SNP [dm6]	C	T	3.620e^-4	0.827	INTRON bru-2
X	4143963	X_4143963_SNP [dm3] X_4249930_SNP [dm6]	C	T	3.630e^-4	0.827	INTERGENIC
2L	12985353	2L_12985353_SNP [dm3] 2L_12985353_SNP [dm6]	A	G	3.634e^-4	0.827	INTERGENIC
2R	11836227	2R_11836227_SNP [dm3] 2R_15948722_SNP [dm6]	G	A	3.636e^-4	0.827	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18098098	2R_18098098_SNP [dm3] 2R_22210593_SNP [dm6]	T	C	3.638e^-4	0.827	NON_SYNONYMOUS_CODING CG3264 UPSTREAM CG11291
2L	15974168	2L_15974168_SNP [dm3] 2L_15974168_SNP [dm6]	A	G	3.646e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10417748	3R_10417748_INS [dm3] 3R_14592026_INS [dm6]	A	AAA	3.646e^-4	0.827	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22951521	3R_22951521_SNP [dm3] 3R_27125799_SNP [dm6]	A	G	3.647e^-4	0.827	SYNONYMOUS_CODING CG6051	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	15315450	3L_15315450_SNP [dm3] 3L_15322350_SNP [dm6]	G	A	3.657e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	4824431	2L_4824431_SNP [dm3] 2L_4824431_SNP [dm6]	A	T	3.662e^-4	0.827	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9575068	3R_9575068_SNP [dm3] 3R_13749346_SNP [dm6]	C	T	3.664e^-4	0.827	INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7943440	3L_7943440_SNP [dm3] 3L_7950340_SNP [dm6]	A	G	3.670e^-4	0.827	SYNONYMOUS_CODING exex
2L	9773121	2L_9773121_SNP [dm3] 2L_9773121_SNP [dm6]	C	T	3.677e^-4	0.827	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2L	7823447	2L_7823447_SNP [dm3] 2L_7823447_SNP [dm6]	C	T	3.679e^-4	0.827	SPLICE_SITE_REGION CG7115 INTRON CG7115
2R	7574102	2R_7574102_SNP [dm3] 2R_11686597_SNP [dm6]	A	T	3.680e^-4	0.827	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	10348163	3R_10348163_SNP [dm3] 3R_14522441_SNP [dm6]	G	T	3.682e^-4	0.827	NON_SYNONYMOUS_CODING Cyp313a1 INTRON Pde6
3R	17358580	3R_17358580_SNP [dm3] 3R_21532858_SNP [dm6]	T	C	3.685e^-4	0.827	INTRON CR43372
3R	23793519	3R_23793519_SNP [dm3] 3R_27967797_SNP [dm6]	G	A	3.699e^-4	0.827	DOWNSTREAM CG4849 INTRON betaTub97EF
2R	12988601	2R_12988601_SNP [dm3] 2R_17101096_SNP [dm6]	A	C	3.700e^-4	0.827	INTRON CG30456
2R	17929414	2R_17929414_SNP [dm3] 2R_22041909_SNP [dm6]	C	G	3.700e^-4	0.827	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2L	1364790	2L_1364790_SNP [dm3] 2L_1364790_SNP [dm6]	T	G	3.710e^-4	0.827	INTERGENIC
3L	3805693	3L_3805693_SNP [dm3] 3L_3805693_SNP [dm6]	T	A	3.711e^-4	0.827	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	17004717	2L_17004717_SNP [dm3] 2L_17004717_SNP [dm6]	G	A	3.715e^-4	0.827	INTERGENIC
2R	18099026	2R_18099026_SNP [dm3] 2R_22211521_SNP [dm6]	T	C	3.722e^-4	0.827	SYNONYMOUS_CODING CG11291 UPSTREAM CG3264
X	17659688	X_17659688_SNP [dm3] X_17765655_SNP [dm6]	G	A	3.744e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3518512	3L_3518512_SNP [dm3] 3L_3518512_SNP [dm6]	A	T	3.747e^-4	0.827	INTRON Eip63E
2L	19978060	2L_19978060_SNP [dm3] 2L_19978060_SNP [dm6]	C	A	3.748e^-4	0.827	UPSTREAM CR43620 INTRON CG43861
3R	7880607	3R_7880607_SNP [dm3] 3R_12054885_SNP [dm6]	A	T	3.752e^-4	0.827	INTERGENIC
X	19704429	X_19704429_SNP [dm3] X_19810396_SNP [dm6]	C	T	3.754e^-4	0.827	INTERGENIC
2R	13601078	2R_13601078_SNP [dm3] 2R_17713573_SNP [dm6]	T	G	3.756e^-4	0.827	INTRON CG6424	TF binding site mE1_TFBS_sbb
2L	3837134	2L_3837134_SNP [dm3] 2L_3837134_SNP [dm6]	C	T	3.772e^-4	0.827	UTR_5_PRIME slp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8289291	2L_8289291_SNP [dm3] 2L_8289291_SNP [dm6]	A	C	3.774e^-4	0.827	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20331998	X_20331998_INS [dm3] X_20460971_INS [dm6]	A	ATAG	3.775e^-4	0.827	INTRON CG32506	transposable element FlyBase
2L	16792592	2L_16792592_SNP [dm3] 2L_16792592_SNP [dm6]	G	A	3.775e^-4	0.827	NON_SYNONYMOUS_CODING CG17928
3L	3806392	3L_3806392_SNP [dm3] 3L_3806392_SNP [dm6]	C	T	3.778e^-4	0.827	UTR_5_PRIME CG32264 & 1 other UPSTREAM IntS10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10682775	2R_10682775_SNP [dm3] 2R_14795270_SNP [dm6]	G	T	3.783e^-4	0.827	INTRON kn
3R	17358552	3R_17358552_SNP [dm3] 3R_21532830_SNP [dm6]	T	C	3.786e^-4	0.827	INTRON CR43372
3R	11803288	3R_11803288_SNP [dm3] 3R_15977566_SNP [dm6]	C	G	3.788e^-4	0.827	NON_SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
2L	7964712	2L_7964712_SNP [dm3] 2L_7964712_SNP [dm6]	A	G	3.790e^-4	0.827	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19935856	2L_19935856_SNP [dm3] 2L_19935856_SNP [dm6]	T	C	3.791e^-4	0.827	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5074039	2L_5074039_SNP [dm3] 2L_5074039_SNP [dm6]	A	T	3.791e^-4	0.827	INTRON pgant5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19676612	2L_19676612_SNP [dm3] 2L_19676612_SNP [dm6]	T	C	3.798e^-4	0.827	INTRON Lar
2L	8417226	2L_8417226_SNP [dm3] 2L_8417226_SNP [dm6]	C	A	3.800e^-4	0.827	INTRON Akap200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4233744	2R_4233744_SNP [dm3] 2R_8346239_SNP [dm6]	T	C	3.801e^-4	0.827	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	4233746	2R_4233746_INS [dm3] 2R_8346241_INS [dm6]	T	TTATATCTTATTAT...	3.801e^-4	0.827	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	26610369	3R_26610369_SNP [dm3] 3R_30784647_SNP [dm6]	A	G	3.805e^-4	0.827	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7574113	2R_7574113_SNP [dm3] 2R_11686608_SNP [dm6]	A	T	3.808e^-4	0.827	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	3717941	3L_3717941_SNP [dm3] 3L_3717941_SNP [dm6]	A	T	3.808e^-4	0.827	INTRON CG32264
3R	19558992	3R_19558992_SNP [dm3] 3R_23733270_SNP [dm6]	G	A	3.814e^-4	0.827	START_GAINED Rpn9 UTR_5_PRIME Rpn9 UPSTREAM Hmgcr & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9366162	2R_9366162_DEL [dm3] 2R_13478657_DEL [dm6]	ATACGCACAGCCGTATCA...	A	3.818e^-4	0.827	DOWNSTREAM CG43192 INTRON arr
2R	15343035	2R_15343035_SNP [dm3] 2R_19455530_SNP [dm6]	G	A	3.821e^-4	0.827	UPSTREAM par-1 & 1 other DOWNSTREAM CG7744 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5207434	3R_5207434_SNP [dm3] 3R_9381712_SNP [dm6]	A	G	3.822e^-4	0.827	INTRON FER
3L	6298654	3L_6298654_SNP [dm3] 3L_6305554_SNP [dm6]	G	A	3.823e^-4	0.827	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	22017023	2L_22017023_SNP [dm3] 2L_22017023_SNP [dm6]	G	A	3.826e^-4	0.827	SYNONYMOUS_CODING CG31693
3L	2687545	3L_2687545_SNP [dm3] 3L_2687545_SNP [dm6]	A	G	3.829e^-4	0.827	INTRON Fife
3R	19127364	3R_19127364_SNP [dm3] 3R_23301642_SNP [dm6]	C	T	3.837e^-4	0.827	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	3961375	2L_3961375_SNP [dm3] 2L_3961375_SNP [dm6]	C	A	3.846e^-4	0.827	INTRON fred
2R	18943284	2R_18943284_SNP [dm3] 2R_23055761_SNP [dm6]	G	A	3.848e^-4	0.827	INTRON CG44252
3L	18338828	3L_18338828_SNP [dm3] 3L_18345728_SNP [dm6]	G	T	3.854e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2L	14013929	2L_14013929_DEL [dm3] 2L_14013929_DEL [dm6]	AGCGAGAAA	A	3.858e^-4	0.827	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8314157	3L_8314157_SNP [dm3] 3L_8321057_SNP [dm6]	A	G	3.858e^-4	0.827	SYNONYMOUS_CODING CG13670	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14841974	3R_14841974_SNP [dm3] 3R_19016252_SNP [dm6]	G	C	3.860e^-4	0.827	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	3140901	X_3140901_DEL [dm3] X_3246868_DEL [dm6]	TT	T	3.869e^-4	0.827	INTRON dnc
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	3.876e^-4	0.827	INTERGENIC
2L	9417003	2L_9417003_SNP [dm3] 2L_9417003_SNP [dm6]	A	T	3.884e^-4	0.827	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	3.886e^-4	0.827	EXON CR43304
2L	10065122	2L_10065122_SNP [dm3] 2L_10065122_SNP [dm6]	A	T	3.903e^-4	0.827	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
2L	18808639	2L_18808639_SNP [dm3] 2L_18808639_SNP [dm6]	C	G	3.917e^-4	0.827	DOWNSTREAM CG42502 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9957062	3R_9957062_SNP [dm3] 3R_14131340_SNP [dm6]	G	T	3.917e^-4	0.827	INTRON CG14356
3L	2002416	3L_2002416_SNP [dm3] 3L_2002416_SNP [dm6]	G	T	3.924e^-4	0.827	DOWNSTREAM CG42841 INTERGENIC
3R	18105113	3R_18105113_SNP [dm3] 3R_22279391_SNP [dm6]	T	C	3.924e^-4	0.827	INTRON SKIP
2R	14993328	2R_14993328_SNP [dm3] 2R_19105823_SNP [dm6]	A	T	3.926e^-4	0.827	INTRON 5-HT1A
3L	16287461	3L_16287461_SNP [dm3] 3L_16294361_SNP [dm6]	G	A	3.926e^-4	0.827	DOWNSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_sbb
2L	4831737	2L_4831737_SNP [dm3] 2L_4831737_SNP [dm6]	C	T	3.930e^-4	0.827	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12476044	3L_12476044_DEL [dm3] 3L_12482944_DEL [dm6]	TAAAAGCC	A	3.934e^-4	0.827	INTRON CG10663 & 1 other
2R	10281365	2R_10281365_SNP [dm3] 2R_14393860_SNP [dm6]	C	G	3.938e^-4	0.827	INTERGENIC
2R	8789643	2R_8789643_SNP [dm3] 2R_12902138_SNP [dm6]	G	T	3.942e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17775741	3R_17775741_SNP [dm3] 3R_21950019_SNP [dm6]	A	T	3.952e^-4	0.827	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	13216517	3L_13216517_SNP [dm3] 3L_13223417_SNP [dm6]	A	G	3.955e^-4	0.827	INTERGENIC
3R	4708383	3R_4708383_SNP [dm3] 3R_8882661_SNP [dm6]	A	C	3.960e^-4	0.827	INTRON pyd
X	7860791	X_7860791_SNP [dm3] X_7966758_SNP [dm6]	G	A	3.967e^-4	0.827	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	7874626	X_7874626_DEL [dm3] X_7980593_DEL [dm6]	TA	T	3.972e^-4	0.827	INTRON sn
X	3071499	X_3071499_SNP [dm3] X_3177466_SNP [dm6]	C	T	3.975e^-4	0.827	INTRON dnc
2R	7134670	2R_7134670_SNP [dm3] 2R_11247165_SNP [dm6]	T	G	3.976e^-4	0.827	UPSTREAM CG34227 DOWNSTREAM CR30029 INTERGENIC
2L	11147952	2L_11147952_SNP [dm3] 2L_11147952_SNP [dm6]	A	C	3.977e^-4	0.827	INTRON Gyc32E
2R	6468657	2R_6468657_SNP [dm3] 2R_10581152_SNP [dm6]	C	T	3.978e^-4	0.827	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9147784	3L_9147784_SNP [dm3] 3L_9154684_SNP [dm6]	C	T	3.978e^-4	0.827	INTRON Rdl	TF binding site BDTNP1_TFBS_dl
2L	11407933	2L_11407933_SNP [dm3] 2L_11407933_SNP [dm6]	C	A	3.980e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs
2L	3796256	2L_3796256_SNP [dm3] 2L_3796256_SNP [dm6]	C	T	3.981e^-4	0.827	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11686321	2R_11686321_SNP [dm3] 2R_15798816_SNP [dm6]	G	C	3.985e^-4	0.827	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi
X	20332042	X_20332042_SNP [dm3] X_20461015_SNP [dm6]	A	T	4.002e^-4	0.827	INTRON CG32506
3L	2692683	3L_2692683_SNP [dm3] 3L_2692683_SNP [dm6]	A	G	4.006e^-4	0.827	INTRON Fife
3R	12759156	3R_12759156_SNP [dm3] 3R_16933434_SNP [dm6]	T	C	4.006e^-4	0.827	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	4883246	2L_4883246_SNP [dm3] 2L_4883246_SNP [dm6]	G	T	4.010e^-4	0.827	UPSTREAM CG3008 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3L	16262331	3L_16262331_SNP [dm3] 3L_16269231_SNP [dm6]	A	C	4.011e^-4	0.827	UPSTREAM CG13068 INTERGENIC
2L	9801443	2L_9801443_SNP [dm3] 2L_9801443_SNP [dm6]	G	A	4.013e^-4	0.827	INTRON nAChRalpha6
2L	16112346	2L_16112346_SNP [dm3] 2L_16112346_SNP [dm6]	A	G	4.020e^-4	0.827	INTERGENIC
X	16163366	X_16163366_SNP [dm3] X_16269333_SNP [dm6]	A	G	4.027e^-4	0.827	SYNONYMOUS_CODING kat80
2L	17052554	2L_17052554_SNP [dm3] 2L_17052554_SNP [dm6]	G	A	4.028e^-4	0.827	INTERGENIC
X	14441396	X_14441396_SNP [dm3] X_14547363_SNP [dm6]	G	A	4.029e^-4	0.827	INTERGENIC
3R	21624581	3R_21624581_SNP [dm3] 3R_25798859_SNP [dm6]	G	A	4.030e^-4	0.827	INTERGENIC
3R	13672874	3R_13672874_SNP [dm3] 3R_17847152_SNP [dm6]	G	C	4.031e^-4	0.827	INTRON tinc
3L	10792436	3L_10792436_SNP [dm3] 3L_10799336_SNP [dm6]	G	A	4.033e^-4	0.827	INTERGENIC
X	18611624	X_18611624_DEL [dm3] X_18717591_DEL [dm6]	GG	G	4.035e^-4	0.827	INTRON CCKLR-17D1
2R	14603156	2R_14603156_SNP [dm3] 2R_18715651_SNP [dm6]	T	G	4.036e^-4	0.827	INTERGENIC
2R	16605655	2R_16605655_SNP [dm3] 2R_20718150_SNP [dm6]	C	G	4.049e^-4	0.827	INTRON dpr
3L	10422008	3L_10422008_SNP [dm3] 3L_10428908_SNP [dm6]	A	T	4.065e^-4	0.827	DOWNSTREAM Ir67b INTERGENIC
2R	12032044	2R_12032044_SNP [dm3] 2R_16144539_SNP [dm6]	A	C	4.065e^-4	0.827	SYNONYMOUS_CODING Aats-cys
3L	12264577	3L_12264577_SNP [dm3] 3L_12271477_SNP [dm6]	A	G	4.070e^-4	0.827	UPSTREAM Pbgs DOWNSTREAM CG4300 INTERGENIC
2L	13891097	2L_13891097_SNP [dm3] 2L_13891097_SNP [dm6]	G	C	4.071e^-4	0.827	INTRON CenG1A
2L	13667960	2L_13667960_SNP [dm3] 2L_13667960_SNP [dm6]	T	C	4.072e^-4	0.827	INTRON CG18507
2L	13705228	2L_13705228_SNP [dm3] 2L_13705228_SNP [dm6]	A	T	4.073e^-4	0.827	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	4001578	2L_4001578_SNP [dm3] 2L_4001578_SNP [dm6]	A	G	4.073e^-4	0.827	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	6263923	2L_6263923_SNP [dm3] 2L_6263923_SNP [dm6]	G	A	4.075e^-4	0.827	SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10984851	3L_10984851_SNP [dm3] 3L_10991751_SNP [dm6]	C	A	4.079e^-4	0.827	INTRON klu	TF binding site BDTNP1_TFBS_dl
3L	1344612	3L_1344612_SNP [dm3] 3L_1344612_SNP [dm6]	G	A	4.090e^-4	0.827	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7669626	2R_7669626_SNP [dm3] 2R_11782121_SNP [dm6]	C	T	4.090e^-4	0.827	INTRON ths
3L	3943843	3L_3943843_SNP [dm3] 3L_3943843_SNP [dm6]	C	T	4.092e^-4	0.827	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	25432763	3R_25432763_SNP [dm3] 3R_29607041_SNP [dm6]	C	G	4.102e^-4	0.827	INTRON alph
2L	4834598	2L_4834598_SNP [dm3] 2L_4834598_SNP [dm6]	G	A	4.104e^-4	0.827	SYNONYMOUS_CODING Ir25a UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	1229613	2L_1229613_SNP [dm3] 2L_1229613_SNP [dm6]	C	T	4.114e^-4	0.827	UTR_3_PRIME CG42329
2R	16572855	2R_16572855_SNP [dm3] 2R_20685350_SNP [dm6]	C	T	4.119e^-4	0.827	DOWNSTREAM Gr57a INTERGENIC
3L	16421458	3L_16421458_SNP [dm3] 3L_16428358_SNP [dm6]	T	A	4.121e^-4	0.827	INTRON CG33158 & 1 other
3R	15280294	3R_15280294_SNP [dm3] 3R_19454572_SNP [dm6]	C	A	4.123e^-4	0.827	INTRON CG31221
3L	10220365	3L_10220365_SNP [dm3] 3L_10227265_SNP [dm6]	A	G	4.124e^-4	0.827	INTERGENIC
3R	12365050	3R_12365050_DEL [dm3] 3R_16539328_DEL [dm6]	GTGTG	G	4.129e^-4	0.827	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1114257	2L_1114257_SNP [dm3] 2L_1114257_SNP [dm6]	T	A	4.131e^-4	0.827	DOWNSTREAM Pino & 1 other INTERGENIC
3R	8897434	3R_8897434_SNP [dm3] 3R_13071712_SNP [dm6]	A	G	4.133e^-4	0.827	UPSTREAM sim INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	4800789	X_4800789_SNP [dm3] X_4906756_SNP [dm6]	A	T	4.133e^-4	0.827	UPSTREAM CG6927 DOWNSTREAM CG42594 INTERGENIC
2L	4178036	2L_4178036_SNP [dm3] 2L_4178036_SNP [dm6]	A	G	4.134e^-4	0.827	INTERGENIC
2L	19912128	2L_19912128_SNP [dm3] 2L_19912128_SNP [dm6]	A	T	4.138e^-4	0.827	NON_SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick
3R	15280806	3R_15280806_SNP [dm3] 3R_19455084_SNP [dm6]	C	A	4.146e^-4	0.827	INTRON CG31221
2R	19489380	2R_19489380_SNP [dm3] 2R_23601857_SNP [dm6]	A	T	4.149e^-4	0.827	UPSTREAM IM18 & 2 others DOWNSTREAM CG43209 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	4.150e^-4	0.827	INTERGENIC
2L	4331413	2L_4331413_SNP [dm3] 2L_4331413_SNP [dm6]	C	A	4.152e^-4	0.827	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
2L	7475887	2L_7475887_SNP [dm3] 2L_7475887_SNP [dm6]	G	T	4.157e^-4	0.827	INTRON Ziz & 1 other
3R	13659751	3R_13659751_SNP [dm3] 3R_17834029_SNP [dm6]	G	A	4.162e^-4	0.827	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13670509	3R_13670509_SNP [dm3] 3R_17844787_SNP [dm6]	T	C	4.164e^-4	0.827	INTRON tinc
2L	11138132	2L_11138132_SNP [dm3] 2L_11138132_SNP [dm6]	A	G	4.164e^-4	0.827	SYNONYMOUS_CODING hgo DOWNSTREAM Gyc32E
2L	20284132	2L_20284132_SNP [dm3] 2L_20284132_SNP [dm6]	T	A	4.166e^-4	0.827	INTERGENIC
2L	1718374	2L_1718374_SNP [dm3] 2L_1718374_SNP [dm6]	G	T	4.169e^-4	0.827	INTRON Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10113120	3L_10113120_SNP [dm3] 3L_10120020_SNP [dm6]	A	T	4.172e^-4	0.827	INTRON dpr6
2R	2744360	2R_2744360_SNP [dm3] 2R_6856855_SNP [dm6]	C	T	4.173e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	20155209	3L_20155209_SNP [dm3] 3L_20162109_SNP [dm6]	C	T	4.176e^-4	0.827	INTRON CG42674
2L	8145573	2L_8145573_SNP [dm3] 2L_8145573_SNP [dm6]	G	T	4.177e^-4	0.827	UPSTREAM CG43394 & 1 other INTRON CG8552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20402304	X_20402304_SNP [dm3] X_20531277_SNP [dm6]	T	A	4.179e^-4	0.827	INTERGENIC
3R	15392219	3R_15392219_SNP [dm3] 3R_19566497_SNP [dm6]	A	T	4.189e^-4	0.827	INTRON Dys
X	15138728	X_15138728_SNP [dm3] X_15244695_SNP [dm6]	A	G	4.189e^-4	0.827	NON_SYNONYMOUS_CODING PPYR1
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	4.196e^-4	0.827	INTRON nwk
2L	13933849	2L_13933849_SNP [dm3] 2L_13933849_SNP [dm6]	C	T	4.199e^-4	0.827	INTRON Ance-3 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	16037307	2L_16037307_SNP [dm3] 2L_16037307_SNP [dm6]	T	C	4.204e^-4	0.827	INTRON beat-Ic	TF binding site mE1_TFBS_cad
2L	7515007	2L_7515007_SNP [dm3] 2L_7515007_SNP [dm6]	C	G	4.209e^-4	0.827	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13124932	3R_13124932_SNP [dm3] 3R_17299210_SNP [dm6]	T	G	4.219e^-4	0.827	INTERGENIC
2R	11466716	2R_11466716_SNP [dm3] 2R_15579211_SNP [dm6]	A	G	4.226e^-4	0.827	INTERGENIC
X	21867241	X_21867241_SNP [dm3] X_22465405_SNP [dm6]	T	C	4.229e^-4	0.827	SYNONYMOUS_CODING CG14619 INTRON CG14619
2R	19846412	2R_19846412_SNP [dm3] 2R_23958889_SNP [dm6]	G	A	4.230e^-4	0.827	SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
3L	3027217	3L_3027217_SNP [dm3] 3L_3027217_SNP [dm6]	C	A	4.231e^-4	0.827	UPSTREAM aly INTERGENIC
3L	14045498	3L_14045498_SNP [dm3] 3L_14052398_SNP [dm6]	A	T	4.232e^-4	0.827	UTR_3_PRIME CG6833 UPSTREAM CG43986 DOWNSTREAM CG13484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	17453901	3L_17453901_SNP [dm3] 3L_17460801_SNP [dm6]	C	A	4.237e^-4	0.827	DOWNSTREAM CR44565 INTERGENIC
3L	2678144	3L_2678144_SNP [dm3] 3L_2678144_SNP [dm6]	G	A	4.240e^-4	0.827	INTRON Fife	TF binding site mE1_TFBS_chinmo
2L	15748960	2L_15748960_SNP [dm3] 2L_15748960_SNP [dm6]	A	T	4.242e^-4	0.827	UPSTREAM CycE DOWNSTREAM l_2_35Di & 1 other INTERGENIC
3R	2965251	3R_2965251_SNP [dm3] 3R_7139529_SNP [dm6]	G	A	4.252e^-4	0.827	INTRON Fer1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19911343	2L_19911343_DEL [dm3] 2L_19911343_DEL [dm6]	GTCATTTCACTCAGCTGGCT...	G	4.253e^-4	0.827	DOWNSTREAM TotF INTRON sick EXON CR43097
3R	12339900	3R_12339900_INS [dm3] 3R_16514178_INS [dm6]	T	TGAGCTAAA	4.253e^-4	0.827	SPLICE_SITE_REGION CG42342 INTRON CG42342
2L	3979929	2L_3979929_SNP [dm3] 2L_3979929_SNP [dm6]	A	C	4.259e^-4	0.827	INTRON fred
3L	8092877	3L_8092877_SNP [dm3] 3L_8099777_SNP [dm6]	C	G	4.267e^-4	0.827	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3L	5478766	3L_5478766_SNP [dm3] 3L_5485666_SNP [dm6]	C	A	4.267e^-4	0.827	INTERGENIC
3R	26083445	3R_26083445_SNP [dm3] 3R_30257723_SNP [dm6]	C	T	4.272e^-4	0.827	INTERGENIC
3R	10417954	3R_10417954_SNP [dm3] 3R_14592232_SNP [dm6]	A	C	4.274e^-4	0.827	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12365072	3R_12365072_SNP [dm3] 3R_16539350_SNP [dm6]	G	T	4.276e^-4	0.827	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7317527	2L_7317527_SNP [dm3] 2L_7317527_SNP [dm6]	C	A	4.277e^-4	0.827	INTERGENIC
X	13149550	X_13149550_SNP [dm3] X_13255517_SNP [dm6]	G	T	4.277e^-4	0.827	INTRON mew
3R	18168342	3R_18168342_SNP [dm3] 3R_22342620_SNP [dm6]	C	A	4.285e^-4	0.827	UPSTREAM CG5386 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	20718546	3L_20718546_SNP [dm3] 3L_20725446_SNP [dm6]	C	G	4.296e^-4	0.827	INTERGENIC
2R	5348337	2R_5348337_SNP [dm3] 2R_9460832_SNP [dm6]	T	C	4.298e^-4	0.827	INTRON Camta
3R	18529176	3R_18529176_SNP [dm3] 3R_22703454_SNP [dm6]	C	T	4.301e^-4	0.827	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15337443	2L_15337443_SNP [dm3] 2L_15337443_SNP [dm6]	T	A	4.302e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14539311	3R_14539311_SNP [dm3] 3R_18713589_SNP [dm6]	G	A	4.310e^-4	0.827	SYNONYMOUS_CODING VAChT INTRON Cha	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9897232	3L_9897232_SNP [dm3] 3L_9904132_SNP [dm6]	A	G	4.312e^-4	0.827	INTERGENIC
2L	5233260	2L_5233260_SNP [dm3] 2L_5233260_SNP [dm6]	A	T	4.313e^-4	0.827	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19846305	2R_19846305_SNP [dm3] 2R_23958782_SNP [dm6]	C	T	4.321e^-4	0.827	SYNONYMOUS_CODING alpha-catenin-related	TF binding site mE1_TFBS_chinmo
2R	11467404	2R_11467404_SNP [dm3] 2R_15579899_SNP [dm6]	C	G	4.324e^-4	0.827	INTERGENIC
3L	2690684	3L_2690684_SNP [dm3] 3L_2690684_SNP [dm6]	T	A	4.326e^-4	0.827	INTRON Fife
3R	24060577	3R_24060577_SNP [dm3] 3R_28234855_SNP [dm6]	G	A	4.326e^-4	0.827	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3R	23239475	3R_23239475_SNP [dm3] 3R_27413753_SNP [dm6]	C	T	4.328e^-4	0.827	INTRON side	TF binding site mE1_TFBS_chinmo
2L	9134218	2L_9134218_SNP [dm3] 2L_9134218_SNP [dm6]	T	C	4.332e^-4	0.827	INTRON CG32982
X	13212183	X_13212183_SNP [dm3] X_13318150_SNP [dm6]	A	T	4.335e^-4	0.827	INTRON IP3K2
2L	4295024	2L_4295024_SNP [dm3] 2L_4295024_SNP [dm6]	A	G	4.354e^-4	0.827	INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	18849208	3L_18849208_SNP [dm3] 3L_18856108_SNP [dm6]	C	A	4.356e^-4	0.827	UPSTREAM CR45388 INTERGENIC
3R	1533030	3R_1533030_SNP [dm3] 3R_5707308_SNP [dm6]	A	G	4.359e^-4	0.827	NON_SYNONYMOUS_CODING plx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17181116	2R_17181116_SNP [dm3] 2R_21293611_SNP [dm6]	C	T	4.362e^-4	0.827	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	2998245	2R_2998245_SNP [dm3] 2R_7110740_SNP [dm6]	G	A	4.363e^-4	0.827	INTRON esn
X	2367292	X_2367292_SNP [dm3] X_2473259_SNP [dm6]	G	A	4.367e^-4	0.827	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_HSA
2R	5361360	2R_5361360_SNP [dm3] 2R_9473855_SNP [dm6]	C	T	4.368e^-4	0.827	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12304893	2R_12304893_SNP [dm3] 2R_16417388_SNP [dm6]	A	T	4.369e^-4	0.827	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
3L	15259798	3L_15259798_SNP [dm3] 3L_15266698_SNP [dm6]	C	G	4.371e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9855933	3R_9855933_SNP [dm3] 3R_14030211_SNP [dm6]	A	G	4.385e^-4	0.827	NON_SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl
3L	15918353	3L_15918353_DEL [dm3] 3L_15925253_DEL [dm6]	AATA	A	4.392e^-4	0.827	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4790555	3L_4790555_SNP [dm3] 3L_4790555_SNP [dm6]	C	G	4.392e^-4	0.827	NON_SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	14585236	3L_14585236_SNP [dm3] 3L_14592136_SNP [dm6]	T	G	4.394e^-4	0.827	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19566780	3R_19566780_SNP [dm3] 3R_23741058_SNP [dm6]	C	T	4.394e^-4	0.827	INTRON Hmgcr
2R	19041758	2R_19041758_SNP [dm3] 2R_23154235_SNP [dm6]	T	A	4.395e^-4	0.827	DOWNSTREAM CG43207 INTRON CG9899
3L	9414115	3L_9414115_SNP [dm3] 3L_9421015_SNP [dm6]	A	G	4.404e^-4	0.827	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15788424	3R_15788424_SNP [dm3] 3R_19962702_SNP [dm6]	G	A	4.404e^-4	0.827	INTRON Hs6st
2L	18757394	2L_18757394_INS [dm3] 2L_18757394_INS [dm6]	C	CTTTATGTTAGTGAC...	4.413e^-4	0.827	INTERGENIC
3L	14074295	3L_14074295_SNP [dm3] 3L_14081195_SNP [dm6]	C	A	4.418e^-4	0.827	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3L	14565926	3L_14565926_SNP [dm3] 3L_14572826_SNP [dm6]	A	T	4.421e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8293593	2R_8293593_SNP [dm3] 2R_12406088_SNP [dm6]	T	C	4.425e^-4	0.827	SYNONYMOUS_CODING Cpr49Af DOWNSTREAM Cpr49Ae
3R	17549061	3R_17549061_SNP [dm3] 3R_21723339_SNP [dm6]	G	T	4.430e^-4	0.827	DOWNSTREAM CR44096 INTERGENIC
X	4138554	X_4138554_SNP [dm3] X_4244521_SNP [dm6]	G	A	4.431e^-4	0.827	SYNONYMOUS_CODING Muc4B
2R	5449376	2R_5449376_DEL [dm3] 2R_9561871_DEL [dm6]	TGTACGCCAGTTCAGGGAAT...	T	4.438e^-4	0.827	DOWNSTREAM Or45b INTRON CG1809 EXON CR45281
2R	5449403	2R_5449403_DEL [dm3] 2R_9561898_DEL [dm6]	ACAAGCAGCTTAACTA...	G	4.438e^-4	0.827	DOWNSTREAM Or45b INTRON CG1809 EXON CR45281

By genomic position
Variant impact
Gene name

mn_NegGeotaxis_CTRL phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results