DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.386e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02504
In_3R_Mo	0.06880

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	13.4889	0.0012
In_3R_P	5.5906	0.0611
In_3R_K	4.855	0.0883

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2487 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11480965	3L_11480965_SNP [dm3] 3L_11487865_SNP [dm6]	T	G	1.341e^-6	0.601	UTR_5_PRIME chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9614355	3R_9614355_SNP [dm3] 3R_13788633_SNP [dm6]	G	A	1.870e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19761612	X_19761612_SNP [dm3] X_19867579_SNP [dm6]	C	T	2.569e^-6	0.601	INTRON Hers	TF binding site BDTNP1_TFBS_dl
3R	15897709	3R_15897709_SNP [dm3] 3R_20071987_SNP [dm6]	C	A	3.120e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	3.433e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8324200	3L_8324200_SNP [dm3] 3L_8331100_SNP [dm6]	A	G	3.458e^-6	0.601	DOWNSTREAM CG34462 INTERGENIC
2L	4960317	2L_4960317_SNP [dm3] 2L_4960317_SNP [dm6]	C	T	4.004e^-6	0.601	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26460819	3R_26460819_SNP [dm3] 3R_30635097_SNP [dm6]	G	T	4.007e^-6	0.601	INTERGENIC
3L	10653214	3L_10653214_DEL [dm3] 3L_10660114_DEL [dm6]	ATTTTCATTTG...	A	4.019e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26460536	3R_26460536_SNP [dm3] 3R_30634814_SNP [dm6]	T	C	4.835e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16371177	2L_16371177_SNP [dm3] 2L_16371177_SNP [dm6]	T	C	5.184e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	5.222e^-6	0.601	INTRON beat-VI
2L	14772203	2L_14772203_SNP [dm3] 2L_14772203_SNP [dm6]	A	G	5.789e^-6	0.601	INTERGENIC
X	19761382	X_19761382_SNP [dm3] X_19867349_SNP [dm6]	G	A	6.212e^-6	0.601	INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	6788349	X_6788349_SNP [dm3] X_6894316_SNP [dm6]	G	A	6.408e^-6	0.601	INTERGENIC
3R	15245807	3R_15245807_SNP [dm3] 3R_19420085_SNP [dm6]	C	A	6.489e^-6	0.601	INTRON CG31221
3L	10653161	3L_10653161_SNP [dm3] 3L_10660061_SNP [dm6]	C	A	6.768e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4029375	3L_4029375_SNP [dm3] 3L_4029375_SNP [dm6]	C	T	6.996e^-6	0.601	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
3R	15897630	3R_15897630_SNP [dm3] 3R_20071908_SNP [dm6]	A	T	7.532e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3606253	2L_3606253_SNP [dm3] 2L_3606253_SNP [dm6]	G	C	7.574e^-6	0.601	INTRON odd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13736815	3R_13736815_SNP [dm3] 3R_17911093_SNP [dm6]	C	T	7.857e^-6	0.601	UPSTREAM CG43445 INTRON Rim
3L	8216931	3L_8216931_SNP [dm3] 3L_8223831_SNP [dm6]	G	A	7.896e^-6	0.601	DOWNSTREAM CG13678 INTERGENIC
3R	15897629	3R_15897629_SNP [dm3] 3R_20071907_SNP [dm6]	G	T	8.140e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10653291	3L_10653291_SNP [dm3] 3L_10660191_SNP [dm6]	A	T	8.221e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10653293	3L_10653293_SNP [dm3] 3L_10660193_SNP [dm6]	T	A	8.522e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9277841	2R_9277841_SNP [dm3] 2R_13390336_SNP [dm6]	A	G	9.009e^-6	0.601	SYNONYMOUS_CODING CG43691
3L	13264634	3L_13264634_SNP [dm3] 3L_13271534_SNP [dm6]	A	C	9.605e^-6	0.601	INTRON caps
3R	13736835	3R_13736835_SNP [dm3] 3R_17911113_SNP [dm6]	A	G	9.685e^-6	0.601	UPSTREAM CG43445 INTRON Rim
3R	15245823	3R_15245823_SNP [dm3] 3R_19420101_SNP [dm6]	C	T	9.748e^-6	0.601	INTRON CG31221
3R	20099919	3R_20099919_SNP [dm3] 3R_24274197_SNP [dm6]	T	C	9.853e^-6	0.601	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13919847	X_13919847_DEL [dm3] X_14025814_DEL [dm6]	TT	T	1.008e^-5	0.601	UPSTREAM tRNA:S774:12Ec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	5064393	2L_5064393_SNP [dm3] 2L_5064393_SNP [dm6]	T	C	1.026e^-5	0.601	UTR_5_PRIME qtc UPSTREAM CR43820 INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10653268	3L_10653268_SNP [dm3] 3L_10660168_SNP [dm6]	T	A	1.105e^-5	0.602	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13736891	3R_13736891_SNP [dm3] 3R_17911169_SNP [dm6]	T	A	1.116e^-5	0.602	UPSTREAM CG43445 INTRON Rim
3L	20787917	3L_20787917_SNP [dm3] 3L_20794817_SNP [dm6]	G	A	1.151e^-5	0.602	DOWNSTREAM CR43705 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8441693	2R_8441693_SNP [dm3] 2R_12554188_SNP [dm6]	A	T	1.169e^-5	0.602	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3L	6750993	3L_6750993_SNP [dm3] 3L_6757893_SNP [dm6]	A	G	1.187e^-5	0.602	SYNONYMOUS_CODING CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10653278	3L_10653278_SNP [dm3] 3L_10660178_SNP [dm6]	C	T	1.272e^-5	0.626	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15584092	X_15584092_SNP [dm3] X_15690059_SNP [dm6]	T	C	1.302e^-5	0.626	INTRON CG43132	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16358228	3L_16358228_SNP [dm3] 3L_16365128_SNP [dm6]	G	A	1.376e^-5	0.626	SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	1.392e^-5	0.626	INTERGENIC
3R	15245856	3R_15245856_SNP [dm3] 3R_19420134_SNP [dm6]	A	C	1.402e^-5	0.626	INTRON CG31221
3R	20100081	3R_20100081_SNP [dm3] 3R_24274359_SNP [dm6]	G	C	1.535e^-5	0.661	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15245511	3R_15245511_SNP [dm3] 3R_19419789_SNP [dm6]	T	A	1.554e^-5	0.661	INTRON CG31221
2L	18513994	2L_18513994_SNP [dm3] 2L_18513994_SNP [dm6]	T	A	1.585e^-5	0.661	DOWNSTREAM CG10178 INTERGENIC
2L	14904374	2L_14904374_SNP [dm3] 2L_14904374_SNP [dm6]	G	A	1.651e^-5	0.671	INTERGENIC
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	1.681e^-5	0.671	INTERGENIC
3R	12243844	3R_12243844_SNP [dm3] 3R_16418122_SNP [dm6]	A	G	1.879e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	14846044	2L_14846044_SNP [dm3] 2L_14846044_SNP [dm6]	G	T	1.882e^-5	0.674	SYNONYMOUS_CODING CG15279
3L	1252000	3L_1252000_SNP [dm3] 3L_1252000_SNP [dm6]	G	A	1.958e^-5	0.674	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	10653170	3L_10653170_DEL [dm3] 3L_10660070_DEL [dm6]	AGATTAAATTTAA...	A	2.028e^-5	0.674	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	960797	2L_960797_SNP [dm3] 2L_960797_SNP [dm6]	C	A	2.150e^-5	0.674	INTERGENIC
3L	8974968	3L_8974968_SNP [dm3] 3L_8981868_SNP [dm6]	T	C	2.160e^-5	0.674	START_GAINED CG13314 UTR_5_PRIME CG13314 UPSTREAM CG13314 DOWNSTREAM Galk
2L	19271009	2L_19271009_SNP [dm3] 2L_19271009_SNP [dm6]	C	T	2.202e^-5	0.674	INTRON CR44190
2L	19271015	2L_19271015_SNP [dm3] 2L_19271015_SNP [dm6]	C	T	2.202e^-5	0.674	INTRON CR44190
3L	10653284	3L_10653284_SNP [dm3] 3L_10660184_SNP [dm6]	A	G	2.215e^-5	0.674	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13866074	2L_13866074_SNP [dm3] 2L_13866074_SNP [dm6]	A	T	2.234e^-5	0.674	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	16823106	3R_16823106_SNP [dm3] 3R_20997384_SNP [dm6]	C	T	2.301e^-5	0.674	INTRON Calx
3R	14701643	3R_14701643_SNP [dm3] 3R_18875921_SNP [dm6]	C	T	2.320e^-5	0.674	NON_SYNONYMOUS_CODING CG14298
2L	13726762	2L_13726762_SNP [dm3] 2L_13726762_SNP [dm6]	T	C	2.324e^-5	0.674	INTERGENIC
3R	15393934	3R_15393934_SNP [dm3] 3R_19568212_SNP [dm6]	A	G	2.422e^-5	0.674	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
2L	13726764	2L_13726764_SNP [dm3] 2L_13726764_SNP [dm6]	G	T	2.439e^-5	0.674	INTERGENIC
3L	12031926	3L_12031926_SNP [dm3] 3L_12038826_SNP [dm6]	T	G	2.518e^-5	0.674	INTRON rols	TF binding site mE1_TFBS_inv
3R	26456354	3R_26456354_SNP [dm3] 3R_30630632_SNP [dm6]	C	T	2.525e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_cad
X	6166345	X_6166345_SNP [dm3] X_6272312_SNP [dm6]	A	C	2.557e^-5	0.674	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	17244422	X_17244422_SNP [dm3] X_17350389_SNP [dm6]	A	T	2.561e^-5	0.674	INTERGENIC
3L	5472512	3L_5472512_SNP [dm3] 3L_5479412_SNP [dm6]	G	C	2.579e^-5	0.674	UPSTREAM CG4835 INTERGENIC
2L	14846035	2L_14846035_SNP [dm3] 2L_14846035_SNP [dm6]	G	A	2.616e^-5	0.674	SYNONYMOUS_CODING CG15279
3R	13736899	3R_13736899_SNP [dm3] 3R_17911177_SNP [dm6]	T	C	2.655e^-5	0.674	UPSTREAM CG43445 INTRON Rim
3L	10653279	3L_10653279_SNP [dm3] 3L_10660179_SNP [dm6]	C	T	2.718e^-5	0.674	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5228235	3R_5228235_SNP [dm3] 3R_9402513_SNP [dm6]	T	G	2.779e^-5	0.674	UTR_3_PRIME CG8132 DOWNSTREAM CG9356	TF binding site mE1_TFBS_chinmo
3L	15995416	3L_15995416_SNP [dm3] 3L_16002316_SNP [dm6]	C	T	2.797e^-5	0.674	INTRON CG5830	TF binding site BDTNP1_TFBS_hb
3L	18806096	3L_18806096_SNP [dm3] 3L_18812996_SNP [dm6]	C	T	2.828e^-5	0.674	INTRON CG14073
2L	4215269	2L_4215269_SNP [dm3] 2L_4215269_SNP [dm6]	T	C	2.872e^-5	0.674	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17244432	X_17244432_DEL [dm3] X_17350399_DEL [dm6]	CGC	C	2.882e^-5	0.674	INTERGENIC
3R	19388517	3R_19388517_SNP [dm3] 3R_23562795_SNP [dm6]	G	A	2.950e^-5	0.674	INTRON beat-IV	TF binding site mE1_TFBS_HSA
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	2.989e^-5	0.674	DOWNSTREAM CG4525 INTERGENIC
2L	16371128	2L_16371128_SNP [dm3] 2L_16371128_SNP [dm6]	T	C	3.065e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	8423990	2L_8423990_SNP [dm3] 2L_8423990_SNP [dm6]	T	C	3.107e^-5	0.674	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	3919520	3L_3919520_SNP [dm3] 3L_3919520_SNP [dm6]	C	T	3.166e^-5	0.674	INTRON Eip63F-1
3R	20100228	3R_20100228_SNP [dm3] 3R_24274506_SNP [dm6]	T	C	3.197e^-5	0.674	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11284756	3R_11284756_SNP [dm3] 3R_15459034_SNP [dm6]	C	T	3.199e^-5	0.674	INTRON AdamTS-A
X	6653348	X_6653348_SNP [dm3] X_6759315_SNP [dm6]	G	T	3.368e^-5	0.674	UPSTREAM CG14438 INTRON CG14438 & 1 other EXON CR43496	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	22878085	3R_22878085_SNP [dm3] 3R_27052363_SNP [dm6]	C	G	3.377e^-5	0.674	INTRON RYa-R
2R	19038910	2R_19038910_SNP [dm3] 2R_23151387_SNP [dm6]	A	G	3.425e^-5	0.674	INTERGENIC
2R	8188473	2R_8188473_SNP [dm3] 2R_12300968_SNP [dm6]	T	C	3.454e^-5	0.674	DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	17293395	X_17293395_SNP [dm3] X_17399362_SNP [dm6]	A	G	3.528e^-5	0.674	INTRON B-H1
2R	19365668	2R_19365668_SNP [dm3] 2R_23478145_SNP [dm6]	G	A	3.655e^-5	0.674	UPSTREAM CR43793 INTRON CG43795
2L	16371125	2L_16371125_SNP [dm3] 2L_16371125_SNP [dm6]	T	C	3.671e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	5904560	2L_5904560_SNP [dm3] 2L_5904560_SNP [dm6]	G	A	3.675e^-5	0.674	DOWNSTREAM CR43808 INTRON CG9021
X	17610235	X_17610235_SNP [dm3] X_17716202_SNP [dm6]	G	A	3.741e^-5	0.674	INTRON CG42684
2L	957232	2L_957232_SNP [dm3] 2L_957232_SNP [dm6]	A	C	3.756e^-5	0.674	INTRON CG4341
2L	18513693	2L_18513693_SNP [dm3] 2L_18513693_SNP [dm6]	T	G	3.769e^-5	0.674	DOWNSTREAM CG10178 INTERGENIC
3L	8685352	3L_8685352_SNP [dm3] 3L_8692252_SNP [dm6]	T	A	3.776e^-5	0.674	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6965762	2R_6965762_SNP [dm3] 2R_11078257_SNP [dm6]	G	T	3.781e^-5	0.674	INTRON luna
X	13447316	X_13447316_SNP [dm3] X_13553283_SNP [dm6]	C	T	3.816e^-5	0.674	INTRON CG11816
3R	11603420	3R_11603420_SNP [dm3] 3R_15777698_SNP [dm6]	A	T	3.833e^-5	0.674	DOWNSTREAM CG4525 INTERGENIC
2R	17023751	2R_17023751_SNP [dm3] 2R_21136246_SNP [dm6]	G	A	3.843e^-5	0.674	INTRON Magi	TF binding site mE1_TFBS_sens
3R	13736897	3R_13736897_SNP [dm3] 3R_17911175_SNP [dm6]	T	C	3.853e^-5	0.674	UPSTREAM CG43445 INTRON Rim
X	16375305	X_16375305_SNP [dm3] X_16481272_SNP [dm6]	A	T	3.897e^-5	0.674	INTRON para
X	6653349	X_6653349_SNP [dm3] X_6759316_SNP [dm6]	C	T	3.955e^-5	0.674	UPSTREAM CG14438 INTRON CG14438 & 1 other EXON CR43496	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16463850	2R_16463850_SNP [dm3] 2R_20576345_SNP [dm6]	C	G	3.992e^-5	0.674	INTRON qsm
3R	17872318	3R_17872318_SNP [dm3] 3R_22046596_SNP [dm6]	G	A	3.998e^-5	0.674	INTRON how	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11485169	3R_11485169_SNP [dm3] 3R_15659447_SNP [dm6]	T	C	4.048e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11284803	3R_11284803_SNP [dm3] 3R_15459081_SNP [dm6]	C	A	4.097e^-5	0.674	INTRON AdamTS-A
2R	16481142	2R_16481142_SNP [dm3] 2R_20593637_SNP [dm6]	T	C	4.098e^-5	0.674	UPSTREAM bl INTRON bl
3R	13736865	3R_13736865_SNP [dm3] 3R_17911143_SNP [dm6]	G	C	4.109e^-5	0.674	UPSTREAM CG43445 INTRON Rim
3R	16388253	3R_16388253_SNP [dm3] 3R_20562531_SNP [dm6]	G	T	4.180e^-5	0.674	UTR_3_PRIME CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12193338	2R_12193338_SNP [dm3] 2R_16305833_SNP [dm6]	C	A	4.226e^-5	0.674	EXON CR45232
2L	14042128	2L_14042128_SNP [dm3] 2L_14042128_SNP [dm6]	A	T	4.362e^-5	0.674	UTR_5_PRIME nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3L	7257111	3L_7257111_SNP [dm3] 3L_7264011_SNP [dm6]	C	T	4.384e^-5	0.674	UPSTREAM CG14830 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24049625	3R_24049625_SNP [dm3] 3R_28223903_SNP [dm6]	T	C	4.385e^-5	0.674	INTRON CG34354
2R	4552999	2R_4552999_SNP [dm3] 2R_8665494_SNP [dm6]	T	A	4.424e^-5	0.674	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	16868049	X_16868049_SNP [dm3] X_16974016_SNP [dm6]	T	C	4.427e^-5	0.674	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	17390443	X_17390443_SNP [dm3] X_17496410_SNP [dm6]	A	C	4.460e^-5	0.674	UPSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_Kr
3L	13156104	3L_13156104_SNP [dm3] 3L_13163004_SNP [dm6]	G	A	4.472e^-5	0.674	INTERGENIC
3R	10529719	3R_10529719_SNP [dm3] 3R_14703997_SNP [dm6]	G	A	4.492e^-5	0.674	INTRON kibra	TF binding site mE1_TFBS_HSA
2R	8188465	2R_8188465_SNP [dm3] 2R_12300960_SNP [dm6]	A	T	4.503e^-5	0.674	DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	4010857	2L_4010857_SNP [dm3] 2L_4010857_SNP [dm6]	A	G	4.506e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	4.524e^-5	0.674	INTRON nwk
X	16566918	X_16566918_SNP [dm3] X_16672885_SNP [dm6]	A	T	4.602e^-5	0.674	INTRON CG13012
3R	13736747	3R_13736747_SNP [dm3] 3R_17911025_SNP [dm6]	T	A	4.603e^-5	0.674	UPSTREAM CG43445 INTRON Rim
2L	18415885	2L_18415885_SNP [dm3] 2L_18415885_SNP [dm6]	C	G	4.629e^-5	0.674	INTERGENIC
X	3141273	X_3141273_SNP [dm3] X_3247240_SNP [dm6]	A	G	4.669e^-5	0.674	INTRON dnc
2L	4216452	2L_4216452_SNP [dm3] 2L_4216452_SNP [dm6]	G	A	4.793e^-5	0.674	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19233320	2L_19233320_SNP [dm3] 2L_19233320_SNP [dm6]	T	A	4.803e^-5	0.674	INTERGENIC
2R	8441692	2R_8441692_SNP [dm3] 2R_12554187_SNP [dm6]	C	A	4.851e^-5	0.674	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2R	7121199	2R_7121199_SNP [dm3] 2R_11233694_SNP [dm6]	T	C	4.861e^-5	0.674	NON_SYNONYMOUS_CODING CG13218 UPSTREAM CG13228	TF binding site BDTNP1_TFBS_dl
2R	16497527	2R_16497527_DEL [dm3] 2R_20610022_DEL [dm6]	CC	C	4.892e^-5	0.674	INTRON Hil	TF binding site mE1_TFBS_cad
3R	19600567	3R_19600567_SNP [dm3] 3R_23774845_SNP [dm6]	C	T	4.904e^-5	0.674	SYNONYMOUS_CODING Nup98-96 UPSTREAM CG10208	TF binding site mE1_TFBS_HSA
3R	26456423	3R_26456423_SNP [dm3] 3R_30630701_SNP [dm6]	C	T	4.917e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8759760	2L_8759760_SNP [dm3] 2L_8759760_SNP [dm6]	G	C	4.941e^-5	0.674	INTERGENIC
3L	9846167	3L_9846167_SNP [dm3] 3L_9853067_SNP [dm6]	G	A	4.963e^-5	0.674	INTRON RasGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	3158872	X_3158872_SNP [dm3] X_3264839_SNP [dm6]	T	A	5.016e^-5	0.674	INTRON dnc
X	4948568	X_4948568_SNP [dm3] X_5054535_SNP [dm6]	G	A	5.051e^-5	0.674	INTRON CR44833 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12642723	2L_12642723_SNP [dm3] 2L_12642723_SNP [dm6]	A	C	5.105e^-5	0.674	INTRON Ref2
3R	24049642	3R_24049642_DEL [dm3] 3R_28223920_DEL [dm6]	TT	T	5.161e^-5	0.674	INTRON CG34354
3L	10686595	3L_10686595_SNP [dm3] 3L_10693495_SNP [dm6]	G	A	5.167e^-5	0.674	SYNONYMOUS_CODING CG6463 UPSTREAM CG33493 DOWNSTREAM CG11811 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	15830014	3R_15830014_SNP [dm3] 3R_20004292_SNP [dm6]	C	A	5.195e^-5	0.674	INTRON Hs6st
X	4988796	X_4988796_SNP [dm3] X_5094763_SNP [dm6]	T	A	5.258e^-5	0.674	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17938899	X_17938899_SNP [dm3] X_18044866_SNP [dm6]	T	C	5.290e^-5	0.674	NON_SYNONYMOUS_CODING CG15373 INTRON Sh
3R	9614268	3R_9614268_SNP [dm3] 3R_13788546_SNP [dm6]	C	T	5.291e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22179780	2L_22179780_SNP [dm3] 2L_22179780_SNP [dm6]	G	A	5.342e^-5	0.674	INTRON CG3635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14169042	3R_14169042_SNP [dm3] 3R_18343320_SNP [dm6]	T	C	5.347e^-5	0.674	INTRON CG15803
2L	13867677	2L_13867677_SNP [dm3] 2L_13867677_SNP [dm6]	G	T	5.351e^-5	0.674	UPSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	14245019	X_14245019_SNP [dm3] X_14350986_SNP [dm6]	G	A	5.358e^-5	0.674	INTRON dpr8
3R	11967326	3R_11967326_INS [dm3] 3R_16141604_INS [dm6]	G	GG	5.383e^-5	0.674	INTRON Sb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20027508	2L_20027508_SNP [dm3] 2L_20027508_SNP [dm6]	A	C	5.448e^-5	0.674	UPSTREAM sNPF INTERGENIC	TF binding site mE1_TFBS_cnc
3L	5399065	3L_5399065_INS [dm3] 3L_5405965_INS [dm6]	C	CT	5.475e^-5	0.674	INTERGENIC
3R	12243749	3R_12243749_INS [dm3] 3R_16418027_INS [dm6]	C	CC	5.511e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs
2L	5394032	2L_5394032_SNP [dm3] 2L_5394032_SNP [dm6]	A	C	5.521e^-5	0.674	INTERGENIC
3R	22870381	3R_22870381_SNP [dm3] 3R_27044659_SNP [dm6]	T	G	5.562e^-5	0.674	INTRON RYa-R
2R	7423350	2R_7423350_SNP [dm3] 2R_11535845_SNP [dm6]	T	C	5.619e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4029406	3L_4029406_SNP [dm3] 3L_4029406_SNP [dm6]	G	A	5.675e^-5	0.674	UPSTREAM Gr64c DOWNSTREAM Gr64a INTRON Gr64b & 1 other
2R	8991643	2R_8991643_SNP [dm3] 2R_13104138_SNP [dm6]	A	C	5.697e^-5	0.674	UTR_5_PRIME CG44341
2R	19009893	2R_19009893_SNP [dm3] 2R_23122370_SNP [dm6]	G	A	5.742e^-5	0.674	INTERGENIC
3R	13737551	3R_13737551_SNP [dm3] 3R_17911829_SNP [dm6]	G	A	5.760e^-5	0.674	NON_SYNONYMOUS_CODING CG43445 INTRON Rim
3R	12243843	3R_12243843_SNP [dm3] 3R_16418121_SNP [dm6]	T	C	5.764e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5859579	2L_5859579_SNP [dm3] 2L_5859579_SNP [dm6]	C	T	5.775e^-5	0.674	DOWNSTREAM rau INTERGENIC
3R	10592507	3R_10592507_SNP [dm3] 3R_14766785_SNP [dm6]	C	G	5.876e^-5	0.674	INTRON jvl
3L	8974965	3L_8974965_SNP [dm3] 3L_8981865_SNP [dm6]	C	A	5.897e^-5	0.674	UTR_5_PRIME CG13314 UPSTREAM CG13314 DOWNSTREAM Galk
3R	15393938	3R_15393938_SNP [dm3] 3R_19568216_SNP [dm6]	A	T	5.920e^-5	0.674	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
3R	16823094	3R_16823094_SNP [dm3] 3R_20997372_SNP [dm6]	C	A	5.978e^-5	0.674	INTRON Calx
2R	12193405	2R_12193405_SNP [dm3] 2R_16305900_SNP [dm6]	T	A	6.032e^-5	0.674	EXON CR45232
X	15652713	X_15652713_SNP [dm3] X_15758680_SNP [dm6]	G	T	6.052e^-5	0.674	DOWNSTREAM CG8260 INTRON Graf
X	17179015	X_17179015_SNP [dm3] X_17284982_SNP [dm6]	T	A	6.077e^-5	0.674	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3R	12243707	3R_12243707_SNP [dm3] 3R_16417985_SNP [dm6]	G	T	6.171e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs
3R	13736864	3R_13736864_SNP [dm3] 3R_17911142_SNP [dm6]	T	C	6.185e^-5	0.674	UPSTREAM CG43445 INTRON Rim
2R	12011772	2R_12011772_SNP [dm3] 2R_16124267_SNP [dm6]	T	A	6.196e^-5	0.674	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
3R	21392708	3R_21392708_SNP [dm3] 3R_25566986_SNP [dm6]	A	T	6.249e^-5	0.674	INTRON msi
2R	12193524	2R_12193524_SNP [dm3] 2R_16306019_SNP [dm6]	C	T	6.334e^-5	0.674	EXON CR45232
3L	2403097	3L_2403097_SNP [dm3] 3L_2403097_SNP [dm6]	G	C	6.336e^-5	0.674	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12243736	3R_12243736_SNP [dm3] 3R_16418014_SNP [dm6]	C	T	6.359e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs
2L	11037896	2L_11037896_SNP [dm3] 2L_11037896_SNP [dm6]	A	G	6.391e^-5	0.674	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11291858	3L_11291858_INS [dm3] 3L_11298758_INS [dm6]	T	TT	6.404e^-5	0.674	INTERGENIC
2L	13867644	2L_13867644_SNP [dm3] 2L_13867644_SNP [dm6]	A	G	6.461e^-5	0.674	UPSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9009363	3L_9009363_SNP [dm3] 3L_9016263_SNP [dm6]	G	A	6.486e^-5	0.674	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	18513686	2L_18513686_SNP [dm3] 2L_18513686_SNP [dm6]	A	T	6.515e^-5	0.674	DOWNSTREAM CG10178 INTERGENIC
3R	13737584	3R_13737584_SNP [dm3] 3R_17911862_SNP [dm6]	T	A	6.521e^-5	0.674	NON_SYNONYMOUS_CODING CG43445 INTRON Rim
3L	19510215	3L_19510215_SNP [dm3] 3L_19517115_SNP [dm6]	C	T	6.528e^-5	0.674	DOWNSTREAM Cpr76Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	6625505	X_6625505_SNP [dm3] X_6731472_SNP [dm6]	C	G	6.616e^-5	0.674	UPSTREAM CG3168 INTRON CG3168
2L	4519899	2L_4519899_SNP [dm3] 2L_4519899_SNP [dm6]	T	C	6.627e^-5	0.674	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17244557	X_17244557_SNP [dm3] X_17350524_SNP [dm6]	A	G	6.658e^-5	0.674	INTERGENIC
2R	8280960	2R_8280960_SNP [dm3] 2R_12393455_SNP [dm6]	C	A	6.748e^-5	0.674	UPSTREAM Or49a INTERGENIC
3R	12243679	3R_12243679_SNP [dm3] 3R_16417957_SNP [dm6]	G	A	6.791e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs
X	17080565	X_17080565_SNP [dm3] X_17186532_SNP [dm6]	G	A	6.793e^-5	0.674	INTRON baz	TF binding site BDTNP1_TFBS_dl
2R	3597400	2R_3597400_SNP [dm3] 2R_7709895_SNP [dm6]	A	G	6.845e^-5	0.674	UTR_5_PRIME CG1941 UPSTREAM tor & 1 other
3R	13736773	3R_13736773_SNP [dm3] 3R_17911051_SNP [dm6]	A	T	6.845e^-5	0.674	UPSTREAM CG43445 INTRON Rim
3R	11284857	3R_11284857_SNP [dm3] 3R_15459135_SNP [dm6]	A	G	6.939e^-5	0.674	INTRON AdamTS-A
3R	15245522	3R_15245522_INS [dm3] 3R_19419800_INS [dm6]	T	TATAAGTTAC	6.959e^-5	0.674	INTRON CG31221
2R	7004282	2R_7004282_SNP [dm3] 2R_11116777_SNP [dm6]	A	C	6.993e^-5	0.674	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19460884	X_19460884_SNP [dm3] X_19566851_SNP [dm6]	T	A	7.016e^-5	0.674	SYNONYMOUS_CODING car	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6709973	X_6709973_SNP [dm3] X_6815940_SNP [dm6]	G	T	7.019e^-5	0.674	INTRON iav
3L	6758605	3L_6758605_SNP [dm3] 3L_6765505_SNP [dm6]	T	C	7.056e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9178748	3L_9178748_SNP [dm3] 3L_9185648_SNP [dm6]	G	A	7.144e^-5	0.674	INTERGENIC
X	17033309	X_17033309_SNP [dm3] X_17139276_SNP [dm6]	C	T	7.160e^-5	0.674	SYNONYMOUS_CODING mei-218 UTR_3_PRIME mei-217	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16639728	3R_16639728_SNP [dm3] 3R_20814006_SNP [dm6]	C	T	7.267e^-5	0.674	SYNONYMOUS_CODING Fancd2
3R	13736792	3R_13736792_SNP [dm3] 3R_17911070_SNP [dm6]	G	C	7.282e^-5	0.674	UPSTREAM CG43445 INTRON Rim
2L	18513999	2L_18513999_SNP [dm3] 2L_18513999_SNP [dm6]	G	A	7.288e^-5	0.674	DOWNSTREAM CG10178 INTERGENIC
3R	26177514	3R_26177514_SNP [dm3] 3R_30351792_SNP [dm6]	G	A	7.289e^-5	0.674	INTRON hdc
2R	12193439	2R_12193439_SNP [dm3] 2R_16305934_SNP [dm6]	A	C	7.318e^-5	0.674	EXON CR45232
2L	8416551	2L_8416551_SNP [dm3] 2L_8416551_SNP [dm6]	T	C	7.355e^-5	0.674	INTRON Akap200	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13447338	X_13447338_SNP [dm3] X_13553305_SNP [dm6]	C	T	7.357e^-5	0.674	INTRON CG11816
3R	22878071	3R_22878071_DEL [dm3] 3R_27052349_DEL [dm6]	AA	A	7.363e^-5	0.674	INTRON RYa-R
2R	7579688	2R_7579688_SNP [dm3] 2R_11692183_SNP [dm6]	A	G	7.371e^-5	0.674	INTRON CG13197
3R	11992164	3R_11992164_SNP [dm3] 3R_16166442_SNP [dm6]	A	T	7.414e^-5	0.675	INTRON CG6006	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4254170	2R_4254170_SNP [dm3] 2R_8366665_SNP [dm6]	C	A	7.574e^-5	0.685	UTR_5_PRIME boly DOWNSTREAM CG18449 INTRON pdm3
2R	6753374	2R_6753374_SNP [dm3] 2R_10865869_SNP [dm6]	A	G	7.614e^-5	0.685	INTRON CG30015
2L	13880093	2L_13880093_SNP [dm3] 2L_13880093_SNP [dm6]	G	A	7.754e^-5	0.685	INTRON CenG1A	TF binding site mE1_TFBS_HSA
X	18512016	X_18512016_SNP [dm3] X_18617983_SNP [dm6]	A	T	7.770e^-5	0.685	UPSTREAM CG15040 INTERGENIC
2R	7018300	2R_7018300_SNP [dm3] 2R_11130795_SNP [dm6]	A	C	7.781e^-5	0.685	INTERGENIC
2L	13726648	2L_13726648_SNP [dm3] 2L_13726648_SNP [dm6]	C	T	7.859e^-5	0.685	INTERGENIC
3L	6456827	3L_6456827_SNP [dm3] 3L_6463727_SNP [dm6]	C	A	7.871e^-5	0.685	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
X	12979238	X_12979238_SNP [dm3] X_13085205_SNP [dm6]	G	T	7.913e^-5	0.685	INTRON hep
3R	13736797	3R_13736797_SNP [dm3] 3R_17911075_SNP [dm6]	G	T	7.957e^-5	0.685	UPSTREAM CG43445 INTRON Rim
X	17063705	X_17063705_SNP [dm3] X_17169672_SNP [dm6]	G	A	7.964e^-5	0.685	INTRON baz	TF binding site BDTNP1_TFBS_dl
X	18041754	X_18041754_INS [dm3] X_18147721_INS [dm6]	G	CTCA	7.984e^-5	0.685	INTERGENIC
X	18041757	X_18041757_SNP [dm3] X_18147724_SNP [dm6]	T	C	7.984e^-5	0.685	INTERGENIC
2R	3597116	2R_3597116_SNP [dm3] 2R_7709611_SNP [dm6]	C	G	8.060e^-5	0.685	UPSTREAM CG1941 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19008800	2R_19008800_SNP [dm3] 2R_23121277_SNP [dm6]	G	A	8.090e^-5	0.685	INTERGENIC
X	19440981	X_19440981_SNP [dm3] X_19546948_SNP [dm6]	G	A	8.114e^-5	0.685	INTRON CG32532	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11523465	3L_11523465_SNP [dm3] 3L_11530365_SNP [dm6]	C	A	8.124e^-5	0.685	INTRON Mob2
3R	15897626	3R_15897626_SNP [dm3] 3R_20071904_SNP [dm6]	A	G	8.221e^-5	0.685	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5457360	2L_5457360_SNP [dm3] 2L_5457360_SNP [dm6]	C	T	8.242e^-5	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
X	17082823	X_17082823_SNP [dm3] X_17188790_SNP [dm6]	T	C	8.315e^-5	0.685	INTRON baz	TF binding site mE1_TFBS_chinmo
X	1458439	X_1458439_SNP [dm3] X_1564406_SNP [dm6]	G	A	8.387e^-5	0.685	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	960792	2L_960792_SNP [dm3] 2L_960792_SNP [dm6]	T	C	8.407e^-5	0.685	INTERGENIC
2R	18769420	2R_18769420_SNP [dm3] 2R_22881897_SNP [dm6]	T	C	8.458e^-5	0.685	SYNONYMOUS_CODING CG3501 DOWNSTREAM PIP5K59B & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22878571	3R_22878571_INS [dm3] 3R_27052849_INS [dm6]	C	CTCACAGCCAA...	8.465e^-5	0.685	INTRON RYa-R
3L	3919407	3L_3919407_SNP [dm3] 3L_3919407_SNP [dm6]	A	T	8.512e^-5	0.685	INTRON Eip63F-1
X	2873017	X_2873017_SNP [dm3] X_2978984_SNP [dm6]	T	C	8.523e^-5	0.685	INTRON kirre	regulatory region REDfly_CRMs
X	19761765	X_19761765_SNP [dm3] X_19867732_SNP [dm6]	A	C	8.527e^-5	0.685	INTRON Hers	TF binding site BDTNP1_TFBS_dl
2R	12193527	2R_12193527_SNP [dm3] 2R_16306022_SNP [dm6]	C	T	8.581e^-5	0.685	EXON CR45232
3R	26353255	3R_26353255_SNP [dm3] 3R_30527533_SNP [dm6]	T	G	8.649e^-5	0.685	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
X	18041758	X_18041758_SNP [dm3] X_18147725_SNP [dm6]	G	T	8.800e^-5	0.685	INTERGENIC
3L	1251741	3L_1251741_SNP [dm3] 3L_1251741_SNP [dm6]	C	T	8.870e^-5	0.685	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
2L	13880081	2L_13880081_SNP [dm3] 2L_13880081_SNP [dm6]	T	A	8.885e^-5	0.685	INTRON CenG1A	TF binding site mE1_TFBS_HSA
3L	6760019	3L_6760019_SNP [dm3] 3L_6766919_SNP [dm6]	A	G	8.941e^-5	0.685	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	6760020	3L_6760020_SNP [dm3] 3L_6766920_SNP [dm6]	A	T	8.941e^-5	0.685	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	6760054	3L_6760054_SNP [dm3] 3L_6766954_SNP [dm6]	C	G	8.941e^-5	0.685	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	11553767	2L_11553767_SNP [dm3] 2L_11553767_SNP [dm6]	A	C	8.988e^-5	0.685	INTERGENIC
3L	13624818	3L_13624818_SNP [dm3] 3L_13631718_SNP [dm6]	G	A	9.009e^-5	0.685	INTRON bru-3
3L	1256888	3L_1256888_SNP [dm3] 3L_1256888_SNP [dm6]	A	G	9.012e^-5	0.685	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
X	16565941	X_16565941_SNP [dm3] X_16671908_SNP [dm6]	T	A	9.066e^-5	0.685	INTRON CG13012
3R	26353227	3R_26353227_SNP [dm3] 3R_30527505_SNP [dm6]	C	T	9.128e^-5	0.685	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2R	9686632	2R_9686632_SNP [dm3] 2R_13799127_SNP [dm6]	C	T	9.129e^-5	0.685	INTRON Cpr50Cb
2L	11553747	2L_11553747_SNP [dm3] 2L_11553747_SNP [dm6]	T	G	9.197e^-5	0.685	INTERGENIC
X	1458441	X_1458441_SNP [dm3] X_1564408_SNP [dm6]	A	G	9.238e^-5	0.685	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	10886120	3L_10886120_SNP [dm3] 3L_10893020_SNP [dm6]	C	A	9.290e^-5	0.685	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
X	3344608	X_3344608_SNP [dm3] X_3450575_SNP [dm6]	C	G	9.374e^-5	0.685	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8188448	2R_8188448_SNP [dm3] 2R_12300943_SNP [dm6]	G	A	9.406e^-5	0.685	SPLICE_SITE_REGION CG8850 DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	20100237	3R_20100237_SNP [dm3] 3R_24274515_SNP [dm6]	A	C	9.419e^-5	0.685	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6555692	3L_6555692_SNP [dm3] 3L_6562592_SNP [dm6]	T	C	9.424e^-5	0.685	SYNONYMOUS_CODING CG18769 DOWNSTREAM jv INTRON CG18769
3L	8845572	3L_8845572_SNP [dm3] 3L_8852472_SNP [dm6]	A	T	9.427e^-5	0.685	INTRON dally
2R	8281792	2R_8281792_SNP [dm3] 2R_12394287_SNP [dm6]	A	T	9.447e^-5	0.685	UPSTREAM CG30048 INTRON Or49a
3R	24767210	3R_24767210_DEL [dm3] 3R_28941488_DEL [dm6]	TA	T	9.447e^-5	0.685	INTRON CG14521
3R	24767215	3R_24767215_INS [dm3] 3R_28941493_INS [dm6]	T	AATG	9.447e^-5	0.685	INTRON CG14521
3R	23715422	3R_23715422_SNP [dm3] 3R_27889700_SNP [dm6]	T	C	9.451e^-5	0.685	INTRON CG34353
3L	6458476	3L_6458476_SNP [dm3] 3L_6465376_SNP [dm6]	C	T	9.466e^-5	0.685	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16715260	3R_16715260_SNP [dm3] 3R_20889538_SNP [dm6]	A	C	9.535e^-5	0.685	INTERGENIC
2L	18513989	2L_18513989_SNP [dm3] 2L_18513989_SNP [dm6]	A	T	9.660e^-5	0.685	DOWNSTREAM CG10178 INTERGENIC
2L	5394025	2L_5394025_SNP [dm3] 2L_5394025_SNP [dm6]	C	T	9.755e^-5	0.685	INTERGENIC
2L	18531385	2L_18531385_SNP [dm3] 2L_18531385_SNP [dm6]	G	C	9.757e^-5	0.685	DOWNSTREAM Pde11 INTRON CG10211
2L	18531533	2L_18531533_SNP [dm3] 2L_18531533_SNP [dm6]	T	C	9.757e^-5	0.685	SYNONYMOUS_CODING CG10211 DOWNSTREAM Pde11
2L	14409796	2L_14409796_SNP [dm3] 2L_14409796_SNP [dm6]	C	A	9.761e^-5	0.685	UPSTREAM elB EXON CR44733	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7004140	2R_7004140_SNP [dm3] 2R_11116635_SNP [dm6]	T	A	9.811e^-5	0.685	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11037971	2L_11037971_SNP [dm3] 2L_11037971_SNP [dm6]	A	G	9.818e^-5	0.685	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	11037877	2L_11037877_SNP [dm3] 2L_11037877_SNP [dm6]	A	T	9.834e^-5	0.685	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8281794	2R_8281794_SNP [dm3] 2R_12394289_SNP [dm6]	T	A	9.837e^-5	0.685	UPSTREAM CG30048 INTRON Or49a
3R	14885594	3R_14885594_SNP [dm3] 3R_19059872_SNP [dm6]	G	A	9.865e^-5	0.685	INTRON cdi	TF binding site BDTNP1_TFBS_dl
3L	10289077	3L_10289077_SNP [dm3] 3L_10295977_SNP [dm6]	A	G	9.895e^-5	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3R	22977182	3R_22977182_SNP [dm3] 3R_27151460_SNP [dm6]	G	A	1.003e^-4	0.692	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	20780549	3L_20780549_SNP [dm3] 3L_20787449_SNP [dm6]	A	G	1.012e^-4	0.694	SYNONYMOUS_CODING CG11396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6765330	X_6765330_SNP [dm3] X_6871297_SNP [dm6]	A	G	1.018e^-4	0.694	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26353256	3R_26353256_SNP [dm3] 3R_30527534_SNP [dm6]	C	A	1.020e^-4	0.694	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
X	3194956	X_3194956_SNP [dm3] X_3300923_SNP [dm6]	G	A	1.023e^-4	0.694	INTRON dnc
3R	22977167	3R_22977167_SNP [dm3] 3R_27151445_SNP [dm6]	G	A	1.025e^-4	0.694	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22977156	3R_22977156_SNP [dm3] 3R_27151434_SNP [dm6]	A	G	1.033e^-4	0.694	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6184280	2R_6184280_SNP [dm3] 2R_10296775_SNP [dm6]	A	T	1.034e^-4	0.694	SYNONYMOUS_CODING CAP INTRON CAP
3L	887279	3L_887279_SNP [dm3] 3L_887279_SNP [dm6]	T	A	1.038e^-4	0.694	UPSTREAM CG32479 INTRON CG32479	TF binding site BDTNP1_TFBS_dl
2L	4457139	2L_4457139_SNP [dm3] 2L_4457139_SNP [dm6]	G	A	1.039e^-4	0.694	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11123354	2R_11123354_SNP [dm3] 2R_15235849_SNP [dm6]	G	C	1.050e^-4	0.697	INTRON Fs	TF binding site mE1_TFBS_chinmo
X	17807272	X_17807272_DEL [dm3] X_17913239_DEL [dm6]	TGCAG	C	1.051e^-4	0.697	INTRON CG6847	TF binding site BDTNP1_TFBS_dl
2L	13865001	2L_13865001_SNP [dm3] 2L_13865001_SNP [dm6]	G	T	1.060e^-4	0.7	DOWNSTREAM CR44848 INTRON CenG1A
2L	2245485	2L_2245485_SNP [dm3] 2L_2245485_SNP [dm6]	G	A	1.079e^-4	0.704	DOWNSTREAM CG4267 EXON CR42859
2L	14846335	2L_14846335_SNP [dm3] 2L_14846335_SNP [dm6]	G	A	1.079e^-4	0.704	SYNONYMOUS_CODING CG15279
3L	3663860	3L_3663860_SNP [dm3] 3L_3663860_SNP [dm6]	C	T	1.079e^-4	0.704	INTERGENIC
2L	14176822	2L_14176822_SNP [dm3] 2L_14176822_SNP [dm6]	C	T	1.089e^-4	0.704	INTRON CG43333
X	18736601	X_18736601_SNP [dm3] X_18842568_SNP [dm6]	T	G	1.091e^-4	0.704	UTR_3_PRIME Pvf1
2R	19596075	2R_19596075_SNP [dm3] 2R_23708552_SNP [dm6]	G	A	1.093e^-4	0.704	UTR_3_PRIME l_2_tid UPSTREAM CR45326 INTRON l_2_not & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1147019	3L_1147019_SNP [dm3] 3L_1147019_SNP [dm6]	T	A	1.094e^-4	0.704	INTRON bab2
3R	26353243	3R_26353243_SNP [dm3] 3R_30527521_SNP [dm6]	T	A	1.099e^-4	0.704	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	20257494	3R_20257494_SNP [dm3] 3R_24431772_SNP [dm6]	T	G	1.099e^-4	0.704	INTRON nAChRalpha1
2R	13885055	2R_13885055_SNP [dm3] 2R_17997550_SNP [dm6]	T	C	1.113e^-4	0.707	INTRON dpr13
X	5032626	X_5032626_SNP [dm3] X_5138593_SNP [dm6]	T	G	1.114e^-4	0.707	INTRON rg & 1 other
2L	5981602	2L_5981602_SNP [dm3] 2L_5981602_SNP [dm6]	C	G	1.120e^-4	0.707	UPSTREAM eIF-4a & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13866153	2L_13866153_SNP [dm3] 2L_13866153_SNP [dm6]	A	T	1.125e^-4	0.707	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	17698275	3L_17698275_SNP [dm3] 3L_17705175_SNP [dm6]	T	G	1.126e^-4	0.707	INTRON Ccn
2L	19268417	2L_19268417_SNP [dm3] 2L_19268417_SNP [dm6]	C	G	1.127e^-4	0.707	DOWNSTREAM CR44190 INTERGENIC
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	1.134e^-4	0.707	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9348516	2L_9348516_SNP [dm3] 2L_9348516_SNP [dm6]	T	G	1.137e^-4	0.707	DOWNSTREAM CR44802 INTERGENIC
3L	2397516	3L_2397516_INS [dm3] 3L_2397516_INS [dm6]	G	AT	1.143e^-4	0.707	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	11037880	2L_11037880_SNP [dm3] 2L_11037880_SNP [dm6]	G	C	1.152e^-4	0.707	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037883	2L_11037883_SNP [dm3] 2L_11037883_SNP [dm6]	A	G	1.152e^-4	0.707	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13937929	2L_13937929_SNP [dm3] 2L_13937929_SNP [dm6]	G	A	1.158e^-4	0.707	INTRON Ance-3
3R	11481976	3R_11481976_DEL [dm3] 3R_15656254_DEL [dm6]	TG	T	1.158e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13579465	3R_13579465_SNP [dm3] 3R_17753743_SNP [dm6]	C	T	1.163e^-4	0.707	INTRON TyrR
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	1.163e^-4	0.707	INTRON kek6
3L	11480968	3L_11480968_SNP [dm3] 3L_11487868_SNP [dm6]	G	A	1.172e^-4	0.707	UTR_5_PRIME chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13592141	3R_13592141_SNP [dm3] 3R_17766419_SNP [dm6]	C	G	1.175e^-4	0.707	INTERGENIC
3L	11642015	3L_11642015_SNP [dm3] 3L_11648915_SNP [dm6]	C	T	1.185e^-4	0.707	SYNONYMOUS_CODING CG7339 UPSTREAM RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	20108557	2R_20108557_SNP [dm3] 2R_24221034_SNP [dm6]	G	A	1.187e^-4	0.707	INTRON CG30419
3L	11482152	3L_11482152_SNP [dm3] 3L_11489052_SNP [dm6]	G	A	1.194e^-4	0.707	INTRON chrb	TF binding site BDTNP1_TFBS_dl
2L	12517300	2L_12517300_SNP [dm3] 2L_12517300_SNP [dm6]	T	C	1.216e^-4	0.707	INTRON bun
2L	5904556	2L_5904556_SNP [dm3] 2L_5904556_SNP [dm6]	T	C	1.227e^-4	0.707	DOWNSTREAM CR43808 INTRON CG9021
X	6728895	X_6728895_SNP [dm3] X_6834862_SNP [dm6]	T	C	1.233e^-4	0.707	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2810162	3L_2810162_SNP [dm3] 3L_2810162_SNP [dm6]	A	T	1.235e^-4	0.707	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1259656	3L_1259656_SNP [dm3] 3L_1259656_SNP [dm6]	G	A	1.250e^-4	0.707	INTRON CG9134
X	16064024	X_16064024_DEL [dm3] X_16169991_DEL [dm6]	GT	G	1.250e^-4	0.707	INTERGENIC
3L	18953422	3L_18953422_SNP [dm3] 3L_18960322_SNP [dm6]	C	T	1.253e^-4	0.707	INTERGENIC
2L	1210720	2L_1210720_SNP [dm3] 2L_1210720_SNP [dm6]	A	T	1.253e^-4	0.707	INTERGENIC
2L	4896380	2L_4896380_SNP [dm3] 2L_4896380_SNP [dm6]	G	T	1.254e^-4	0.707	INTRON CG3036
3R	19588180	3R_19588180_SNP [dm3] 3R_23762458_SNP [dm6]	C	T	1.258e^-4	0.707	INTRON CG10217	TF binding site mE1_TFBS_sens
3R	22876921	3R_22876921_SNP [dm3] 3R_27051199_SNP [dm6]	T	C	1.266e^-4	0.707	DOWNSTREAM TwdlT INTRON RYa-R
2L	19175571	2L_19175571_SNP [dm3] 2L_19175571_SNP [dm6]	A	T	1.268e^-4	0.707	UTR_3_PRIME brat INTRON brat
2L	5981589	2L_5981589_SNP [dm3] 2L_5981589_SNP [dm6]	T	C	1.272e^-4	0.707	UPSTREAM eIF-4a & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11482116	3L_11482116_SNP [dm3] 3L_11489016_SNP [dm6]	A	T	1.273e^-4	0.707	INTRON chrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	17430993	X_17430993_SNP [dm3] X_17536960_SNP [dm6]	T	C	1.275e^-4	0.707	INTRON CG43658
3R	7333810	3R_7333810_SNP [dm3] 3R_11508088_SNP [dm6]	A	G	1.277e^-4	0.707	INTERGENIC
2R	16486430	2R_16486430_SNP [dm3] 2R_20598925_SNP [dm6]	G	A	1.277e^-4	0.707	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5931493	2L_5931493_SNP [dm3] 2L_5931493_SNP [dm6]	C	T	1.286e^-4	0.707	INTRON dsf
2R	6943437	2R_6943437_SNP [dm3] 2R_11055932_SNP [dm6]	A	G	1.287e^-4	0.707	INTRON luna
2R	14936529	2R_14936529_SNP [dm3] 2R_19049024_SNP [dm6]	T	A	1.290e^-4	0.707	INTERGENIC
3L	1513949	3L_1513949_SNP [dm3] 3L_1513949_SNP [dm6]	T	C	1.292e^-4	0.707	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2R	6941731	2R_6941731_SNP [dm3] 2R_11054226_SNP [dm6]	C	G	1.294e^-4	0.707	INTRON luna
3R	20257507	3R_20257507_SNP [dm3] 3R_24431785_SNP [dm6]	G	A	1.294e^-4	0.707	INTRON nAChRalpha1
3L	2810094	3L_2810094_SNP [dm3] 3L_2810094_SNP [dm6]	T	C	1.296e^-4	0.707	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3602675	2R_3602675_SNP [dm3] 2R_7715170_SNP [dm6]	G	A	1.296e^-4	0.707	DOWNSTREAM CG1942 INTRON CG1946
3R	23911791	3R_23911791_SNP [dm3] 3R_28086069_SNP [dm6]	A	G	1.297e^-4	0.707	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12243739	3R_12243739_SNP [dm3] 3R_16418017_SNP [dm6]	G	A	1.300e^-4	0.707	INTERGENIC	regulatory region REDfly_CRMs
X	3344983	X_3344983_SNP [dm3] X_3450950_SNP [dm6]	G	T	1.305e^-4	0.707	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5478837	3L_5478837_SNP [dm3] 3L_5485737_SNP [dm6]	G	A	1.306e^-4	0.707	INTERGENIC
3R	11992697	3R_11992697_SNP [dm3] 3R_16166975_SNP [dm6]	A	G	1.313e^-4	0.707	INTRON CG6006
3R	9494599	3R_9494599_SNP [dm3] 3R_13668877_SNP [dm6]	C	T	1.314e^-4	0.707	INTRON Task6
3R	24392269	3R_24392269_SNP [dm3] 3R_28566547_SNP [dm6]	G	A	1.315e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17296308	X_17296308_SNP [dm3] X_17402275_SNP [dm6]	G	A	1.317e^-4	0.707	SYNONYMOUS_CODING B-H1 UTR_3_PRIME B-H1	TF binding site BDTNP1_TFBS_da
2R	19009697	2R_19009697_SNP [dm3] 2R_23122174_SNP [dm6]	T	G	1.338e^-4	0.707	INTERGENIC
2R	7004283	2R_7004283_SNP [dm3] 2R_11116778_SNP [dm6]	C	G	1.338e^-4	0.707	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11496715	3R_11496715_SNP [dm3] 3R_15670993_SNP [dm6]	G	A	1.339e^-4	0.707	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13919762	X_13919762_INS [dm3] X_14025729_INS [dm6]	G	GATATAG	1.340e^-4	0.707	UPSTREAM tRNA:S774:12Ec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	8546074	3L_8546074_SNP [dm3] 3L_8552974_SNP [dm6]	G	C	1.340e^-4	0.707	INTRON rhea
3R	19395696	3R_19395696_INS [dm3] 3R_23569974_INS [dm6]	A	AAA	1.340e^-4	0.707	INTRON beat-IV
X	16555488	X_16555488_SNP [dm3] X_16661455_SNP [dm6]	C	T	1.342e^-4	0.707	NON_SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3R	25052940	3R_25052940_SNP [dm3] 3R_29227218_SNP [dm6]	C	G	1.345e^-4	0.707	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
2L	3518628	2L_3518628_SNP [dm3] 2L_3518628_SNP [dm6]	T	G	1.351e^-4	0.707	NON_SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1251718	3L_1251718_SNP [dm3] 3L_1251718_SNP [dm6]	G	T	1.357e^-4	0.707	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
3L	11525023	3L_11525023_SNP [dm3] 3L_11531923_SNP [dm6]	C	G	1.358e^-4	0.707	INTRON Mob2
2L	5063658	2L_5063658_SNP [dm3] 2L_5063658_SNP [dm6]	T	A	1.364e^-4	0.707	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13497895	2R_13497895_SNP [dm3] 2R_17610390_SNP [dm6]	C	G	1.369e^-4	0.707	INTRON CG10936
2L	15026372	2L_15026372_SNP [dm3] 2L_15026372_SNP [dm6]	T	A	1.374e^-4	0.707	UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_inv
3R	22978013	3R_22978013_SNP [dm3] 3R_27152291_SNP [dm6]	T	C	1.377e^-4	0.707	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	18926335	X_18926335_SNP [dm3] X_19032302_SNP [dm6]	G	A	1.378e^-4	0.707	INTERGENIC
3L	11312619	3L_11312619_SNP [dm3] 3L_11319519_SNP [dm6]	A	G	1.381e^-4	0.707	DOWNSTREAM CG6168 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4010981	2L_4010981_DEL [dm3] 2L_4010981_DEL [dm6]	CAC	A	1.383e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14255720	2L_14255720_SNP [dm3] 2L_14255720_SNP [dm6]	T	C	1.389e^-4	0.707	INTERGENIC
X	17430843	X_17430843_SNP [dm3] X_17536810_SNP [dm6]	T	G	1.398e^-4	0.707	INTRON CG43658
3R	22192995	3R_22192995_SNP [dm3] 3R_26367273_SNP [dm6]	C	T	1.401e^-4	0.707	INTERGENIC
3L	19510497	3L_19510497_SNP [dm3] 3L_19517397_SNP [dm6]	T	C	1.402e^-4	0.707	DOWNSTREAM Cpr76Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4212936	2L_4212936_SNP [dm3] 2L_4212936_SNP [dm6]	G	A	1.402e^-4	0.707	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17179596	X_17179596_SNP [dm3] X_17285563_SNP [dm6]	G	A	1.405e^-4	0.707	DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
3R	11992727	3R_11992727_SNP [dm3] 3R_16167005_SNP [dm6]	T	C	1.412e^-4	0.707	INTRON CG6006
2R	10943729	2R_10943729_SNP [dm3] 2R_15056224_SNP [dm6]	C	A	1.417e^-4	0.707	SYNONYMOUS_CODING CG33467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20257510	3R_20257510_SNP [dm3] 3R_24431788_SNP [dm6]	A	T	1.425e^-4	0.707	INTRON nAChRalpha1
2R	16486762	2R_16486762_SNP [dm3] 2R_20599257_SNP [dm6]	A	G	1.426e^-4	0.707	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21688431	3R_21688431_SNP [dm3] 3R_25862709_SNP [dm6]	C	A	1.427e^-4	0.707	INTRON CG5890
3R	11518742	3R_11518742_SNP [dm3] 3R_15693020_SNP [dm6]	G	T	1.428e^-4	0.707	UPSTREAM CG31446 INTERGENIC
2L	13867717	2L_13867717_SNP [dm3] 2L_13867717_SNP [dm6]	C	G	1.429e^-4	0.707	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9202600	2R_9202600_SNP [dm3] 2R_13315095_SNP [dm6]	C	T	1.431e^-4	0.707	INTERGENIC
2L	19516534	2L_19516534_SNP [dm3] 2L_19516534_SNP [dm6]	A	T	1.433e^-4	0.707	UTR_5_PRIME CG10186	TF binding site mE1_TFBS_chinmo
3L	15391293	3L_15391293_DEL [dm3] 3L_15398193_DEL [dm6]	GG	G	1.435e^-4	0.707	INTERGENIC
3R	25084747	3R_25084747_SNP [dm3] 3R_29259025_SNP [dm6]	C	T	1.441e^-4	0.707	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18513676	2L_18513676_SNP [dm3] 2L_18513676_SNP [dm6]	C	G	1.445e^-4	0.707	DOWNSTREAM CG10178 INTERGENIC
2L	16760405	2L_16760405_SNP [dm3] 2L_16760405_SNP [dm6]	A	C	1.461e^-4	0.707	UTR_5_PRIME ppk17 UPSTREAM ppk17
2R	6184694	2R_6184694_SNP [dm3] 2R_10297189_SNP [dm6]	C	A	1.462e^-4	0.707	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo
2L	13937949	2L_13937949_SNP [dm3] 2L_13937949_SNP [dm6]	T	A	1.464e^-4	0.707	INTRON Ance-3
3L	3634969	3L_3634969_SNP [dm3] 3L_3634969_SNP [dm6]	C	A	1.465e^-4	0.707	INTRON dar1
X	17430917	X_17430917_SNP [dm3] X_17536884_SNP [dm6]	T	G	1.470e^-4	0.707	INTRON CG43658
2L	8759231	2L_8759231_SNP [dm3] 2L_8759231_SNP [dm6]	A	T	1.481e^-4	0.707	INTERGENIC
2L	9456772	2L_9456772_SNP [dm3] 2L_9456772_SNP [dm6]	G	A	1.482e^-4	0.707	INTRON numb	regulatory region REDfly_CRMs
3R	12243772	3R_12243772_SNP [dm3] 3R_16418050_SNP [dm6]	G	A	1.487e^-4	0.707	INTERGENIC	regulatory region REDfly_CRMs
3L	12556485	3L_12556485_SNP [dm3] 3L_12563385_SNP [dm6]	C	T	1.488e^-4	0.707	INTRON sowah
3L	8897175	3L_8897175_SNP [dm3] 3L_8904075_SNP [dm6]	A	T	1.489e^-4	0.707	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
2L	18514010	2L_18514010_INS [dm3] 2L_18514010_INS [dm6]	A	AA	1.493e^-4	0.707	DOWNSTREAM CG10178 INTERGENIC
2L	10303364	2L_10303364_SNP [dm3] 2L_10303364_SNP [dm6]	T	C	1.501e^-4	0.707	SYNONYMOUS_CODING nmd DOWNSTREAM CG5390	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8759234	2L_8759234_SNP [dm3] 2L_8759234_SNP [dm6]	G	A	1.504e^-4	0.707	INTERGENIC
3R	12243741	3R_12243741_SNP [dm3] 3R_16418019_SNP [dm6]	A	G	1.518e^-4	0.707	INTERGENIC	regulatory region REDfly_CRMs
3L	3870828	3L_3870828_SNP [dm3] 3L_3870828_SNP [dm6]	T	A	1.525e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8813199	X_8813199_INS [dm3] X_8919166_INS [dm6]	G	GAG	1.534e^-4	0.707	DOWNSTREAM CR44111 INTRON rdgA
2R	4155357	2R_4155357_SNP [dm3] 2R_8267852_SNP [dm6]	A	G	1.537e^-4	0.707	SYNONYMOUS_CODING CG30371 UPSTREAM CG30375	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6619033	2L_6619033_SNP [dm3] 2L_6619033_SNP [dm6]	C	T	1.537e^-4	0.707	UPSTREAM CR44913 INTRON CG11320
2L	5457344	2L_5457344_SNP [dm3] 2L_5457344_SNP [dm6]	G	T	1.538e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	12547907	3L_12547907_SNP [dm3] 3L_12554807_SNP [dm6]	A	C	1.539e^-4	0.707	INTRON sowah
2R	18279632	2R_18279632_SNP [dm3] 2R_22392127_SNP [dm6]	G	A	1.540e^-4	0.707	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15026370	2L_15026370_SNP [dm3] 2L_15026370_SNP [dm6]	C	A	1.541e^-4	0.707	UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_inv
X	19761389	X_19761389_SNP [dm3] X_19867356_SNP [dm6]	T	A	1.543e^-4	0.707	INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	12592593	X_12592593_SNP [dm3] X_12698560_SNP [dm6]	T	G	1.546e^-4	0.707	INTRON Smr	TF binding site BDTNP1_TFBS_dl
3L	6759983	3L_6759983_SNP [dm3] 3L_6766883_SNP [dm6]	G	T	1.548e^-4	0.707	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	22255267	3R_22255267_SNP [dm3] 3R_26429545_SNP [dm6]	G	C	1.555e^-4	0.707	DOWNSTREAM CR43434 INTERGENIC
3R	16564969	3R_16564969_SNP [dm3] 3R_20739247_SNP [dm6]	A	G	1.557e^-4	0.707	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
2R	12011783	2R_12011783_SNP [dm3] 2R_16124278_SNP [dm6]	C	T	1.558e^-4	0.707	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
3R	11499071	3R_11499071_SNP [dm3] 3R_15673349_SNP [dm6]	G	C	1.560e^-4	0.707	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10885986	3L_10885986_SNP [dm3] 3L_10892886_SNP [dm6]	A	G	1.562e^-4	0.707	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2R	11792969	2R_11792969_SNP [dm3] 2R_15905464_SNP [dm6]	T	C	1.564e^-4	0.707	INTRON sli	TF binding site mE1_TFBS_HSA
2R	9685915	2R_9685915_SNP [dm3] 2R_13798410_SNP [dm6]	C	T	1.575e^-4	0.707	INTRON Cpr50Cb
2L	17995691	2L_17995691_SNP [dm3] 2L_17995691_SNP [dm6]	G	A	1.576e^-4	0.707	INTERGENIC
3R	14365831	3R_14365831_SNP [dm3] 3R_18540109_SNP [dm6]	G	C	1.591e^-4	0.707	INTRON fru
3R	15245740	3R_15245740_SNP [dm3] 3R_19420018_SNP [dm6]	A	G	1.591e^-4	0.707	INTRON CG31221
2L	18513585	2L_18513585_SNP [dm3] 2L_18513585_SNP [dm6]	T	G	1.592e^-4	0.707	DOWNSTREAM CG10178 INTERGENIC
3R	7839398	3R_7839398_SNP [dm3] 3R_12013676_SNP [dm6]	C	A	1.593e^-4	0.707	NON_SYNONYMOUS_CODING GCC185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8188743	2R_8188743_SNP [dm3] 2R_12301238_SNP [dm6]	C	G	1.600e^-4	0.707	SPLICE_SITE_REGION CG8850 DOWNSTREAM CG42700 INTRON CG8850
X	13919767	X_13919767_SNP [dm3] X_14025734_SNP [dm6]	A	T	1.602e^-4	0.707	UPSTREAM tRNA:S774:12Ec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	8759263	2L_8759263_DEL [dm3] 2L_8759263_DEL [dm6]	TT	C	1.610e^-4	0.707	INTERGENIC
3L	1251850	3L_1251850_SNP [dm3] 3L_1251850_SNP [dm6]	T	A	1.615e^-4	0.707	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	2495753	3L_2495753_SNP [dm3] 3L_2495753_SNP [dm6]	G	T	1.617e^-4	0.707	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16565035	3R_16565035_SNP [dm3] 3R_20739313_SNP [dm6]	A	G	1.621e^-4	0.707	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
2R	4142908	2R_4142908_SNP [dm3] 2R_8255403_SNP [dm6]	A	C	1.626e^-4	0.707	NON_SYNONYMOUS_CODING CG14760
2R	17240507	2R_17240507_SNP [dm3] 2R_21353002_SNP [dm6]	A	G	1.630e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12642822	3L_12642822_SNP [dm3] 3L_12649722_SNP [dm6]	G	C	1.633e^-4	0.707	EXON CR43431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	11095693	2R_11095693_SNP [dm3] 2R_15208188_SNP [dm6]	A	T	1.633e^-4	0.707	NON_SYNONYMOUS_CODING Ir51b INTRON row
3L	17198617	3L_17198617_SNP [dm3] 3L_17205517_SNP [dm6]	A	T	1.635e^-4	0.707	INTRON Rbp6
2R	18279623	2R_18279623_SNP [dm3] 2R_22392118_SNP [dm6]	C	T	1.641e^-4	0.707	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5562469	3L_5562469_SNP [dm3] 3L_5569369_SNP [dm6]	C	T	1.649e^-4	0.707	SPLICE_SITE_REGION Msr-110 INTRON Msr-110
3L	9619636	3L_9619636_SNP [dm3] 3L_9626536_SNP [dm6]	C	A	1.649e^-4	0.707	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
3L	13420073	3L_13420073_SNP [dm3] 3L_13426973_SNP [dm6]	G	A	1.649e^-4	0.707	UPSTREAM CG14105 INTERGENIC
2R	17749438	2R_17749438_SNP [dm3] 2R_21861933_SNP [dm6]	A	T	1.657e^-4	0.707	NON_SYNONYMOUS_CODING CG9294
3R	16388244	3R_16388244_SNP [dm3] 3R_20562522_SNP [dm6]	C	T	1.661e^-4	0.707	UTR_3_PRIME CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26353262	3R_26353262_SNP [dm3] 3R_30527540_SNP [dm6]	G	A	1.662e^-4	0.707	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	16564978	3R_16564978_SNP [dm3] 3R_20739256_SNP [dm6]	G	A	1.673e^-4	0.707	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
2R	6128090	2R_6128090_SNP [dm3] 2R_10240585_SNP [dm6]	C	T	1.674e^-4	0.707	UPSTREAM Hdc INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20474238	X_20474238_SNP [dm3] X_20603211_SNP [dm6]	T	A	1.679e^-4	0.707	INTRON RunxA
2R	19367651	2R_19367651_SNP [dm3] 2R_23480128_SNP [dm6]	G	A	1.680e^-4	0.707	INTRON CG43795
3R	6321373	3R_6321373_SNP [dm3] 3R_10495651_SNP [dm6]	C	G	1.684e^-4	0.707	INTERGENIC
2R	5685120	2R_5685120_SNP [dm3] 2R_9797615_SNP [dm6]	C	T	1.688e^-4	0.707	SYNONYMOUS_CODING CG1698 INTRON CG1688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	5219433	2L_5219433_SNP [dm3] 2L_5219433_SNP [dm6]	A	T	1.700e^-4	0.707	UTR_3_PRIME tkv DOWNSTREAM TpnC25D
3L	6745945	3L_6745945_SNP [dm3] 3L_6752845_SNP [dm6]	A	G	1.700e^-4	0.707	UPSTREAM CG8549 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2R	16273447	2R_16273447_SNP [dm3] 2R_20385942_SNP [dm6]	G	T	1.703e^-4	0.707	INTERGENIC
X	19762289	X_19762289_SNP [dm3] X_19868256_SNP [dm6]	G	T	1.704e^-4	0.707	INTRON Hers
2L	6510593	2L_6510593_SNP [dm3] 2L_6510593_SNP [dm6]	A	G	1.704e^-4	0.707	INTRON CG31637
2R	12193365	2R_12193365_SNP [dm3] 2R_16305860_SNP [dm6]	T	C	1.709e^-4	0.707	EXON CR45232
2R	15940352	2R_15940352_SNP [dm3] 2R_20052847_SNP [dm6]	T	C	1.709e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13377506	3L_13377506_SNP [dm3] 3L_13384406_SNP [dm6]	G	T	1.712e^-4	0.707	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	960816	2L_960816_SNP [dm3] 2L_960816_SNP [dm6]	C	A	1.715e^-4	0.707	INTERGENIC
X	17244139	X_17244139_SNP [dm3] X_17350106_SNP [dm6]	A	C	1.717e^-4	0.707	INTERGENIC
X	15652644	X_15652644_SNP [dm3] X_15758611_SNP [dm6]	A	T	1.725e^-4	0.707	DOWNSTREAM CG8260 INTRON Graf
2R	12193462	2R_12193462_SNP [dm3] 2R_16305957_SNP [dm6]	A	T	1.725e^-4	0.707	EXON CR45232
X	6744419	X_6744419_SNP [dm3] X_6850386_SNP [dm6]	C	A	1.728e^-4	0.707	SYNONYMOUS_CODING CG4558 UPSTREAM Cht11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13934071	2L_13934071_SNP [dm3] 2L_13934071_SNP [dm6]	C	G	1.730e^-4	0.707	INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad
2R	15053587	2R_15053587_INS [dm3] 2R_19166082_INS [dm6]	T	TT	1.733e^-4	0.707	INTRON CG10737
2L	8251972	2L_8251972_SNP [dm3] 2L_8251972_SNP [dm6]	T	G	1.745e^-4	0.707	INTRON CG8086
2R	15053986	2R_15053986_SNP [dm3] 2R_19166481_SNP [dm6]	C	T	1.757e^-4	0.707	INTRON CG10737
2R	18279596	2R_18279596_SNP [dm3] 2R_22392091_SNP [dm6]	G	A	1.758e^-4	0.707	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20108496	2R_20108496_SNP [dm3] 2R_24220973_SNP [dm6]	G	A	1.759e^-4	0.707	INTRON CG30419
3R	13737924	3R_13737924_SNP [dm3] 3R_17912202_SNP [dm6]	G	C	1.762e^-4	0.707	DOWNSTREAM CG43445 INTRON Rim
3R	22954179	3R_22954179_SNP [dm3] 3R_27128457_SNP [dm6]	G	A	1.762e^-4	0.707	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17182075	X_17182075_SNP [dm3] X_17288042_SNP [dm6]	T	G	1.763e^-4	0.707	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_cad
X	8514160	X_8514160_SNP [dm3] X_8620127_SNP [dm6]	C	A	1.768e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19367793	2R_19367793_SNP [dm3] 2R_23480270_SNP [dm6]	G	T	1.774e^-4	0.707	INTRON CG43795
3R	25641904	3R_25641904_SNP [dm3] 3R_29816182_SNP [dm6]	C	A	1.776e^-4	0.707	NON_SYNONYMOUS_CODING Vps16B DOWNSTREAM CG7829	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12588668	3R_12588668_SNP [dm3] 3R_16762946_SNP [dm6]	T	C	1.777e^-4	0.707	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19103032	2L_19103032_SNP [dm3] 2L_19103032_SNP [dm6]	A	G	1.778e^-4	0.707	DOWNSTREAM CG17344 & 1 other INTRON Lim3	TF binding site mE1_TFBS_cad
3L	4113589	3L_4113589_SNP [dm3] 3L_4113589_SNP [dm6]	G	C	1.779e^-4	0.707	SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4960185	2L_4960185_SNP [dm3] 2L_4960185_SNP [dm6]	T	G	1.781e^-4	0.707	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12152229	3L_12152229_SNP [dm3] 3L_12159129_SNP [dm6]	G	T	1.785e^-4	0.707	INTRON CG9760
3L	19240245	3L_19240245_SNP [dm3] 3L_19247145_SNP [dm6]	G	A	1.786e^-4	0.707	INTERGENIC
X	16304676	X_16304676_SNP [dm3] X_16410643_SNP [dm6]	T	C	1.798e^-4	0.707	SYNONYMOUS_CODING CG4301
2L	4457147	2L_4457147_SNP [dm3] 2L_4457147_SNP [dm6]	A	C	1.806e^-4	0.707	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11483439	3L_11483439_SNP [dm3] 3L_11490339_SNP [dm6]	T	C	1.806e^-4	0.707	INTRON chrb	TF binding site BDTNP1_TFBS_twi
2R	14821682	2R_14821682_SNP [dm3] 2R_18934177_SNP [dm6]	A	T	1.809e^-4	0.707	INTRON sano
3L	1253249	3L_1253249_DEL [dm3] 3L_1253249_DEL [dm6]	ATCA	A	1.810e^-4	0.707	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17362951	2L_17362951_SNP [dm3] 2L_17362951_SNP [dm6]	A	G	1.811e^-4	0.707	UPSTREAM CG31804 INTERGENIC
2L	6259241	2L_6259241_SNP [dm3] 2L_6259241_SNP [dm6]	G	A	1.839e^-4	0.707	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22984269	3R_22984269_SNP [dm3] 3R_27158547_SNP [dm6]	T	C	1.847e^-4	0.707	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo
3L	12151209	3L_12151209_SNP [dm3] 3L_12158109_SNP [dm6]	T	G	1.849e^-4	0.707	SYNONYMOUS_CODING CG9760	TF binding site mE1_TFBS_cad
3R	11990452	3R_11990452_SNP [dm3] 3R_16164730_SNP [dm6]	A	G	1.852e^-4	0.707	INTRON CG6006
2L	18513707	2L_18513707_SNP [dm3] 2L_18513707_SNP [dm6]	T	A	1.852e^-4	0.707	DOWNSTREAM CG10178 INTERGENIC
3L	6454754	3L_6454754_SNP [dm3] 3L_6461654_SNP [dm6]	C	T	1.863e^-4	0.707	START_GAINED CG42747 UTR_5_PRIME CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7129132	2R_7129132_SNP [dm3] 2R_11241627_SNP [dm6]	A	C	1.869e^-4	0.707	DOWNSTREAM Listericin INTERGENIC
3L	7316790	3L_7316790_SNP [dm3] 3L_7323690_SNP [dm6]	T	C	1.871e^-4	0.707	UTR_5_PRIME Rint1 UPSTREAM RhoGEF4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	4416158	2L_4416158_SNP [dm3] 2L_4416158_SNP [dm6]	A	C	1.875e^-4	0.707	INTRON CG15431
2L	12645150	2L_12645150_SNP [dm3] 2L_12645150_SNP [dm6]	A	C	1.876e^-4	0.707	INTRON Ref2
3L	10289457	3L_10289457_SNP [dm3] 3L_10296357_SNP [dm6]	T	A	1.876e^-4	0.707	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18809111	3L_18809111_SNP [dm3] 3L_18816011_SNP [dm6]	A	T	1.879e^-4	0.707	INTRON CG14073
3R	16388250	3R_16388250_SNP [dm3] 3R_20562528_SNP [dm6]	A	T	1.882e^-4	0.707	UTR_3_PRIME CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10417055	2R_10417055_SNP [dm3] 2R_14529550_SNP [dm6]	A	T	1.883e^-4	0.707	INTRON ttv
3L	2390024	3L_2390024_SNP [dm3] 3L_2390024_SNP [dm6]	G	A	1.902e^-4	0.707	SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11992713	3R_11992713_SNP [dm3] 3R_16166991_SNP [dm6]	G	A	1.902e^-4	0.707	INTRON CG6006
3R	11992720	3R_11992720_SNP [dm3] 3R_16166998_SNP [dm6]	A	T	1.902e^-4	0.707	INTRON CG6006
3L	3562317	3L_3562317_SNP [dm3] 3L_3562317_SNP [dm6]	T	A	1.905e^-4	0.707	INTRON Eip63E
3L	2403232	3L_2403232_SNP [dm3] 3L_2403232_SNP [dm6]	C	T	1.910e^-4	0.707	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19761653	X_19761653_SNP [dm3] X_19867620_SNP [dm6]	T	A	1.914e^-4	0.707	INTRON Hers	TF binding site BDTNP1_TFBS_dl
3L	2810144	3L_2810144_SNP [dm3] 3L_2810144_SNP [dm6]	A	T	1.915e^-4	0.707	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4318092	2L_4318092_SNP [dm3] 2L_4318092_SNP [dm6]	T	A	1.918e^-4	0.707	INTRON tutl	TF binding site mE1_TFBS_HSA
2L	4960179	2L_4960179_SNP [dm3] 2L_4960179_SNP [dm6]	T	C	1.918e^-4	0.707	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2574382	2R_2574382_SNP [dm3] 2R_6686877_SNP [dm6]	A	T	1.922e^-4	0.707	INTRON CG9422 & 1 other	TF binding site mE1_TFBS_cad
X	16648388	X_16648388_SNP [dm3] X_16754355_SNP [dm6]	G	A	1.923e^-4	0.707	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12014013	2R_12014013_SNP [dm3] 2R_16126508_SNP [dm6]	C	A	1.923e^-4	0.707	INTRON spin	TF binding site BDTNP1_TFBS_dl
2L	18152688	2L_18152688_SNP [dm3] 2L_18152688_SNP [dm6]	C	T	1.924e^-4	0.707	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	19164727	X_19164727_SNP [dm3] X_19270694_SNP [dm6]	A	G	1.924e^-4	0.707	SYNONYMOUS_CODING Vav	TF binding site BDTNP1_TFBS_da
3L	11291869	3L_11291869_SNP [dm3] 3L_11298769_SNP [dm6]	A	G	1.926e^-4	0.707	INTERGENIC
2L	5982076	2L_5982076_SNP [dm3] 2L_5982076_SNP [dm6]	C	A	1.928e^-4	0.707	UPSTREAM eIF-4a INTRON eIF-4a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12949308	3L_12949308_SNP [dm3] 3L_12956208_SNP [dm6]	C	G	1.929e^-4	0.707	INTERGENIC
3L	10163095	3L_10163095_SNP [dm3] 3L_10169995_SNP [dm6]	A	T	1.932e^-4	0.707	INTRON dpr10
3L	5740613	3L_5740613_MNP [dm3] 3L_5747513_MNP [dm6]	ACT	TGA	1.938e^-4	0.707	UTR_3_PRIME sif
2R	8486701	2R_8486701_SNP [dm3] 2R_12599196_SNP [dm6]	T	G	1.938e^-4	0.707	INTRON Amph
2R	6398122	2R_6398122_SNP [dm3] 2R_10510617_SNP [dm6]	T	G	1.941e^-4	0.707	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_da
3L	2390083	3L_2390083_SNP [dm3] 3L_2390083_SNP [dm6]	T	G	1.962e^-4	0.708	NON_SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_sens
2R	12193361	2R_12193361_SNP [dm3] 2R_16305856_SNP [dm6]	G	A	1.964e^-4	0.708	EXON CR45232
2R	12011764	2R_12011764_SNP [dm3] 2R_16124259_SNP [dm6]	G	T	1.967e^-4	0.708	SPLICE_SITE_REGION CG30095 UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2L	5981646	2L_5981646_SNP [dm3] 2L_5981646_SNP [dm6]	A	G	1.972e^-4	0.708	UPSTREAM eIF-4a & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6760101	3L_6760101_SNP [dm3] 3L_6767001_SNP [dm6]	G	A	1.998e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	22613520	3R_22613520_SNP [dm3] 3R_26787798_SNP [dm6]	C	T	2.001e^-4	0.708	INTERGENIC
3R	21392724	3R_21392724_SNP [dm3] 3R_25567002_SNP [dm6]	C	T	2.004e^-4	0.708	INTRON msi
2R	4140577	2R_4140577_SNP [dm3] 2R_8253072_SNP [dm6]	A	G	2.005e^-4	0.708	INTERGENIC
2L	18513787	2L_18513787_SNP [dm3] 2L_18513787_SNP [dm6]	A	T	2.007e^-4	0.708	DOWNSTREAM CG10178 INTERGENIC
2L	6342745	2L_6342745_SNP [dm3] 2L_6342745_SNP [dm6]	C	A	2.007e^-4	0.708	SYNONYMOUS_CODING Cpr UPSTREAM Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	8627608	2R_8627608_SNP [dm3] 2R_12740103_SNP [dm6]	A	G	2.008e^-4	0.708	INTRON CG42663
3R	25009814	3R_25009814_SNP [dm3] 3R_29184092_SNP [dm6]	C	T	2.010e^-4	0.708	INTRON CG14509
X	4622625	X_4622625_SNP [dm3] X_4728592_SNP [dm6]	T	C	2.012e^-4	0.708	UTR_3_PRIME Proc-R
X	4997968	X_4997968_SNP [dm3] X_5103935_SNP [dm6]	C	T	2.015e^-4	0.708	INTRON rg & 1 other
3L	1828557	3L_1828557_SNP [dm3] 3L_1828557_SNP [dm6]	A	G	2.025e^-4	0.708	INTRON Cpr62Ba
3L	12152225	3L_12152225_SNP [dm3] 3L_12159125_SNP [dm6]	C	T	2.025e^-4	0.708	INTRON CG9760
3R	14468698	3R_14468698_SNP [dm3] 3R_18642976_SNP [dm6]	C	T	2.028e^-4	0.708	INTRON qin
X	17380414	X_17380414_SNP [dm3] X_17486381_SNP [dm6]	T	C	2.032e^-4	0.708	INTRON CG43658	TF binding site mE1_TFBS_Kr
2L	6710972	2L_6710972_SNP [dm3] 2L_6710972_SNP [dm6]	C	G	2.033e^-4	0.708	DOWNSTREAM AkhR INTERGENIC
2L	7015977	2L_7015977_SNP [dm3] 2L_7015977_SNP [dm6]	C	T	2.040e^-4	0.708	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11037879	2L_11037879_SNP [dm3] 2L_11037879_SNP [dm6]	C	G	2.042e^-4	0.708	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5967994	X_5967994_SNP [dm3] X_6073961_SNP [dm6]	G	T	2.064e^-4	0.708	UPSTREAM Tsp5D INTRON Tsp5D
3L	16031067	3L_16031067_SNP [dm3] 3L_16037967_SNP [dm6]	T	C	2.081e^-4	0.708	DOWNSTREAM CG5895 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
2L	14176744	2L_14176744_SNP [dm3] 2L_14176744_SNP [dm6]	C	G	2.081e^-4	0.708	INTRON CG43333
3L	2810126	3L_2810126_SNP [dm3] 3L_2810126_SNP [dm6]	C	T	2.081e^-4	0.708	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16867794	X_16867794_SNP [dm3] X_16973761_SNP [dm6]	G	A	2.090e^-4	0.708	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26353280	3R_26353280_DEL [dm3] 3R_30527558_DEL [dm6]	AAA	A	2.097e^-4	0.708	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	13934087	2L_13934087_SNP [dm3] 2L_13934087_SNP [dm6]	C	T	2.106e^-4	0.708	INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad
3R	25145013	3R_25145013_SNP [dm3] 3R_29319291_SNP [dm6]	A	G	2.107e^-4	0.708	SYNONYMOUS_CODING Cnx99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13727151	2L_13727151_SNP [dm3] 2L_13727151_SNP [dm6]	A	G	2.111e^-4	0.708	INTERGENIC
3R	9192484	3R_9192484_SNP [dm3] 3R_13366762_SNP [dm6]	G	T	2.112e^-4	0.708	SPLICE_SITE_REGION poly UTR_5_PRIME poly UPSTREAM Dic1 INTRON Dic1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7579743	2R_7579743_SNP [dm3] 2R_11692238_SNP [dm6]	G	A	2.115e^-4	0.708	INTRON CG13197
2R	2574309	2R_2574309_SNP [dm3] 2R_6686804_SNP [dm6]	T	A	2.122e^-4	0.708	INTRON CG9422 & 1 other
X	18815865	X_18815865_SNP [dm3] X_18921832_SNP [dm6]	G	C	2.123e^-4	0.708	INTERGENIC
3R	24766040	3R_24766040_SNP [dm3] 3R_28940318_SNP [dm6]	T	C	2.123e^-4	0.708	INTRON CG14521	TF binding site mE1_TFBS_chinmo
2L	13937960	2L_13937960_SNP [dm3] 2L_13937960_SNP [dm6]	C	A	2.123e^-4	0.708	INTRON Ance-3
X	6709966	X_6709966_INS [dm3] X_6815933_INS [dm6]	A	AATA	2.123e^-4	0.708	INTRON iav
3L	19006125	3L_19006125_SNP [dm3] 3L_19013025_SNP [dm6]	C	T	2.127e^-4	0.708	INTRON nkd
3R	10040195	3R_10040195_SNP [dm3] 3R_14214473_SNP [dm6]	A	G	2.131e^-4	0.708	UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
X	7210461	X_7210461_DEL [dm3] X_7316428_DEL [dm6]	TTGCGGT	T	2.138e^-4	0.708	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6745874	3L_6745874_SNP [dm3] 3L_6752774_SNP [dm6]	C	T	2.139e^-4	0.708	UPSTREAM CG8549 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
2L	18531878	2L_18531878_DEL [dm3] 2L_18531878_DEL [dm6]	GCTA	G	2.142e^-4	0.708	UTR_3_PRIME CG10211 DOWNSTREAM Pde11 & 1 other
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	2.150e^-4	0.708	INTRON nwk
2L	4960149	2L_4960149_SNP [dm3] 2L_4960149_SNP [dm6]	C	T	2.151e^-4	0.708	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17130908	X_17130908_SNP [dm3] X_17236875_SNP [dm6]	C	T	2.172e^-4	0.708	INTRON f
2L	14844445	2L_14844445_SNP [dm3] 2L_14844445_SNP [dm6]	G	A	2.177e^-4	0.708	DOWNSTREAM CG15279 INTERGENIC
3R	26353092	3R_26353092_SNP [dm3] 3R_30527370_SNP [dm6]	A	T	2.180e^-4	0.708	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	14844433	2L_14844433_SNP [dm3] 2L_14844433_SNP [dm6]	T	A	2.182e^-4	0.708	DOWNSTREAM CG15279 INTERGENIC
2R	9686449	2R_9686449_SNP [dm3] 2R_13798944_SNP [dm6]	G	A	2.187e^-4	0.708	INTRON Cpr50Cb
3R	20005170	3R_20005170_SNP [dm3] 3R_24179448_SNP [dm6]	C	G	2.188e^-4	0.708	INTRON CG13606
3R	26459778	3R_26459778_SNP [dm3] 3R_30634056_SNP [dm6]	C	T	2.193e^-4	0.708	INTERGENIC
3L	8850098	3L_8850098_DEL [dm3] 3L_8856998_DEL [dm6]	ATTCTTGAAGT...	A	2.195e^-4	0.708	INTRON dally
X	18924167	X_18924167_SNP [dm3] X_19030134_SNP [dm6]	T	A	2.206e^-4	0.708	INTERGENIC
2L	13959521	2L_13959521_SNP [dm3] 2L_13959521_SNP [dm6]	T	C	2.211e^-4	0.708	INTRON NimA
2L	4896293	2L_4896293_SNP [dm3] 2L_4896293_SNP [dm6]	T	C	2.216e^-4	0.708	INTRON CG3036
2R	12193390	2R_12193390_SNP [dm3] 2R_16305885_SNP [dm6]	A	G	2.221e^-4	0.708	EXON CR45232
2L	13873658	2L_13873658_SNP [dm3] 2L_13873658_SNP [dm6]	C	T	2.222e^-4	0.708	INTRON CenG1A
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	2.224e^-4	0.708	INTRON Octbeta2R
3L	3911936	3L_3911936_SNP [dm3] 3L_3911936_SNP [dm6]	T	C	2.231e^-4	0.708	INTRON Eip63F-1
2L	15864618	2L_15864618_DEL [dm3] 2L_15864618_DEL [dm6]	CGTCCGTCT	A	2.235e^-4	0.708	DOWNSTREAM CR42791 & 1 other INTERGENIC
2R	9385510	2R_9385510_SNP [dm3] 2R_13498005_SNP [dm6]	A	G	2.241e^-4	0.708	INTRON drk
X	18665900	X_18665900_SNP [dm3] X_18771867_SNP [dm6]	C	T	2.243e^-4	0.708	INTRON CCKLR-17D3
2L	5457347	2L_5457347_SNP [dm3] 2L_5457347_SNP [dm6]	A	G	2.253e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	26599290	3R_26599290_SNP [dm3] 3R_30773568_SNP [dm6]	C	T	2.263e^-4	0.708	SPLICE_SITE_REGION zfh1 INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5400374	3L_5400374_SNP [dm3] 3L_5407274_SNP [dm6]	C	G	2.270e^-4	0.708	INTERGENIC
3L	13221119	3L_13221119_SNP [dm3] 3L_13228019_SNP [dm6]	C	T	2.274e^-4	0.708	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	9612017	3L_9612017_SNP [dm3] 3L_9618917_SNP [dm6]	A	T	2.285e^-4	0.708	INTRON LanB2	TF binding site mE1_TFBS_cad
3R	21412792	3R_21412792_SNP [dm3] 3R_25587070_SNP [dm6]	T	C	2.285e^-4	0.708	INTRON msi	TF binding site BDTNP1_TFBS_dl
3L	12084249	3L_12084249_SNP [dm3] 3L_12091149_SNP [dm6]	C	T	2.293e^-4	0.708	INTERGENIC
3L	21770308	3L_21770308_SNP [dm3] 3L_21777208_SNP [dm6]	G	A	2.293e^-4	0.708	DOWNSTREAM CG42689 INTRON CG42552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11506774	3R_11506774_SNP [dm3] 3R_15681052_SNP [dm6]	G	A	2.297e^-4	0.708	INTRON pxb	TF binding site mE1_TFBS_sens
2L	17358020	2L_17358020_SNP [dm3] 2L_17358020_SNP [dm6]	G	A	2.297e^-4	0.708	INTERGENIC
X	5117811	X_5117811_SNP [dm3] X_5223778_SNP [dm6]	A	C	2.299e^-4	0.708	INTRON CG15465 & 1 other
3L	3562344	3L_3562344_SNP [dm3] 3L_3562344_SNP [dm6]	A	T	2.301e^-4	0.708	INTRON Eip63E
X	5117820	X_5117820_SNP [dm3] X_5223787_SNP [dm6]	T	A	2.302e^-4	0.708	INTRON CG15465 & 1 other
3L	12557124	3L_12557124_SNP [dm3] 3L_12564024_SNP [dm6]	T	A	2.307e^-4	0.708	INTRON sowah
3R	9659939	3R_9659939_INS [dm3] 3R_13834217_INS [dm6]	G	GTGTGGGTAAGTAAAG...	2.311e^-4	0.708	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	10826328	3R_10826328_SNP [dm3] 3R_15000606_SNP [dm6]	C	T	2.312e^-4	0.708	INTERGENIC
X	4641312	X_4641312_SNP [dm3] X_4747279_SNP [dm6]	A	G	2.316e^-4	0.708	INTERGENIC
X	17808001	X_17808001_SNP [dm3] X_17913968_SNP [dm6]	C	G	2.325e^-4	0.708	INTRON CG6847
2L	19423493	2L_19423493_SNP [dm3] 2L_19423493_SNP [dm6]	G	C	2.331e^-4	0.708	UTR_5_PRIME Pax UPSTREAM CG16771 & 1 other INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	5457366	2L_5457366_MNP [dm3] 2L_5457366_MNP [dm6]	ACAATT	TGTTAC	2.339e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
X	17288070	X_17288070_SNP [dm3] X_17394037_SNP [dm6]	T	G	2.342e^-4	0.708	INTERGENIC
3L	11524815	3L_11524815_SNP [dm3] 3L_11531715_SNP [dm6]	T	C	2.344e^-4	0.708	INTRON Mob2
3R	21180263	3R_21180263_SNP [dm3] 3R_25354541_SNP [dm6]	C	T	2.345e^-4	0.708	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	12084248	3L_12084248_SNP [dm3] 3L_12091148_SNP [dm6]	G	A	2.346e^-4	0.708	INTERGENIC
X	13919882	X_13919882_SNP [dm3] X_14025849_SNP [dm6]	C	A	2.356e^-4	0.708	UPSTREAM tRNA:S774:12Ec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	18256615	3L_18256615_SNP [dm3] 3L_18263515_SNP [dm6]	A	G	2.358e^-4	0.708	INTERGENIC
X	17807047	X_17807047_SNP [dm3] X_17913014_SNP [dm6]	A	C	2.360e^-4	0.708	INTRON CG6847	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16458634	3L_16458634_SNP [dm3] 3L_16465534_SNP [dm6]	A	T	2.366e^-4	0.708	INTRON CG33158
2L	18922402	2L_18922402_SNP [dm3] 2L_18922402_SNP [dm6]	A	C	2.366e^-4	0.708	INTRON ssp3
3L	6453966	3L_6453966_SNP [dm3] 3L_6460866_SNP [dm6]	T	G	2.366e^-4	0.708	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3R	15245537	3R_15245537_SNP [dm3] 3R_19419815_SNP [dm6]	T	C	2.366e^-4	0.708	INTRON CG31221
2L	16803260	2L_16803260_SNP [dm3] 2L_16803260_SNP [dm6]	A	T	2.367e^-4	0.708	INTRON CG13280	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	17620667	X_17620667_SNP [dm3] X_17726634_SNP [dm6]	A	G	2.371e^-4	0.708	INTRON CG42684
3R	16565040	3R_16565040_SNP [dm3] 3R_20739318_SNP [dm6]	C	T	2.372e^-4	0.708	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
2L	11037867	2L_11037867_SNP [dm3] 2L_11037867_SNP [dm6]	G	A	2.376e^-4	0.708	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18513991	2L_18513991_SNP [dm3] 2L_18513991_SNP [dm6]	G	A	2.379e^-4	0.708	DOWNSTREAM CG10178 INTERGENIC
2L	18769140	2L_18769140_SNP [dm3] 2L_18769140_SNP [dm6]	C	G	2.381e^-4	0.708	SYNONYMOUS_CODING ham START_GAINED ham UTR_5_PRIME ham
X	18419939	X_18419939_SNP [dm3] X_18525906_SNP [dm6]	G	A	2.382e^-4	0.708	DOWNSTREAM CG15042 INTRON Bx
3R	22879713	3R_22879713_SNP [dm3] 3R_27053991_SNP [dm6]	G	T	2.390e^-4	0.708	INTRON RYa-R
2R	5067860	2R_5067860_SNP [dm3] 2R_9180355_SNP [dm6]	T	C	2.390e^-4	0.708	SYNONYMOUS_CODING ltd UPSTREAM ltd INTRON ltd	TF binding site mE1_TFBS_chinmo
3L	21710237	3L_21710237_SNP [dm3] 3L_21717137_SNP [dm6]	A	G	2.395e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1252985	3L_1252985_SNP [dm3] 3L_1252985_SNP [dm6]	T	C	2.408e^-4	0.708	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2716085	2L_2716085_SNP [dm3] 2L_2716085_SNP [dm6]	G	T	2.412e^-4	0.708	INTRON CG31690
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	2.413e^-4	0.708	INTRON fru	TF binding site BDTNP1_TFBS_da
2L	10499607	2L_10499607_SNP [dm3] 2L_10499607_SNP [dm6]	C	A	2.422e^-4	0.708	INTRON Myo31DF
3L	13377512	3L_13377512_SNP [dm3] 3L_13384412_SNP [dm6]	A	G	2.432e^-4	0.708	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	17549670	X_17549670_SNP [dm3] X_17655637_SNP [dm6]	A	T	2.433e^-4	0.708	INTRON IntS2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	957268	2L_957268_SNP [dm3] 2L_957268_SNP [dm6]	C	T	2.443e^-4	0.708	INTRON CG4341
X	17177495	X_17177495_SNP [dm3] X_17283462_SNP [dm6]	A	G	2.445e^-4	0.708	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
3L	16744595	3L_16744595_SNP [dm3] 3L_16751495_SNP [dm6]	G	A	2.447e^-4	0.708	INTERGENIC
3R	22984243	3R_22984243_SNP [dm3] 3R_27158521_SNP [dm6]	A	G	2.449e^-4	0.708	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4209146	2L_4209146_SNP [dm3] 2L_4209146_SNP [dm6]	C	A	2.450e^-4	0.708	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3919516	3L_3919516_SNP [dm3] 3L_3919516_SNP [dm6]	T	G	2.452e^-4	0.708	INTRON Eip63F-1
3L	14350039	3L_14350039_SNP [dm3] 3L_14356939_SNP [dm6]	A	C	2.455e^-4	0.708	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	15790917	2R_15790917_SNP [dm3] 2R_19903412_SNP [dm6]	T	C	2.460e^-4	0.708	INTERGENIC
X	6165064	X_6165064_SNP [dm3] X_6271031_SNP [dm6]	G	A	2.462e^-4	0.708	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23239360	3R_23239360_SNP [dm3] 3R_27413638_SNP [dm6]	G	C	2.463e^-4	0.708	INTRON side
3R	16564972	3R_16564972_SNP [dm3] 3R_20739250_SNP [dm6]	C	T	2.464e^-4	0.708	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3L	17698337	3L_17698337_SNP [dm3] 3L_17705237_SNP [dm6]	G	A	2.468e^-4	0.708	INTRON Ccn
2L	3200669	2L_3200669_SNP [dm3] 2L_3200669_SNP [dm6]	G	C	2.470e^-4	0.708	UPSTREAM CG34393 INTERGENIC
2L	10199961	2L_10199961_SNP [dm3] 2L_10199961_SNP [dm6]	C	T	2.472e^-4	0.708	SYNONYMOUS_CODING Ripalpha UPSTREAM Sur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8799717	3L_8799717_DEL [dm3] 3L_8806617_DEL [dm6]	TCTCCA	T	2.483e^-4	0.708	UPSTREAM CG32024 DOWNSTREAM CG34427 INTRON CG13312	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3R	19588181	3R_19588181_SNP [dm3] 3R_23762459_SNP [dm6]	T	C	2.491e^-4	0.708	INTRON CG10217	TF binding site mE1_TFBS_sens
3L	18885381	3L_18885381_SNP [dm3] 3L_18892281_SNP [dm6]	A	T	2.493e^-4	0.708	UPSTREAM NijB DOWNSTREAM CG3902 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	12547853	3L_12547853_SNP [dm3] 3L_12554753_SNP [dm6]	T	C	2.499e^-4	0.708	INTRON sowah
2L	12642756	2L_12642756_SNP [dm3] 2L_12642756_SNP [dm6]	A	G	2.510e^-4	0.708	INTRON Ref2
2R	18953790	2R_18953790_SNP [dm3] 2R_23066267_SNP [dm6]	C	T	2.513e^-4	0.708	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14346393	3L_14346393_INS [dm3] 3L_14353293_INS [dm6]	T	TT	2.514e^-4	0.708	INTRON fz
3L	3661931	3L_3661931_SNP [dm3] 3L_3661931_SNP [dm6]	G	C	2.516e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16487462	2R_16487462_SNP [dm3] 2R_20599957_SNP [dm6]	C	T	2.522e^-4	0.708	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18346547	2R_18346547_SNP [dm3] 2R_22459042_SNP [dm6]	T	C	2.522e^-4	0.708	INTRON CG10384
3L	2506378	3L_2506378_SNP [dm3] 3L_2506378_SNP [dm6]	C	T	2.522e^-4	0.708	UTR_3_PRIME Spn DOWNSTREAM Spn
2L	10534962	2L_10534962_SNP [dm3] 2L_10534962_SNP [dm6]	T	C	2.524e^-4	0.708	UTR_5_PRIME CG18302
2R	6753461	2R_6753461_SNP [dm3] 2R_10865956_SNP [dm6]	A	G	2.524e^-4	0.708	INTRON CG30015
2L	11195139	2L_11195139_SNP [dm3] 2L_11195139_SNP [dm6]	G	T	2.525e^-4	0.708	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
3L	8357190	3L_8357190_SNP [dm3] 3L_8364090_SNP [dm6]	C	G	2.526e^-4	0.708	INTERGENIC
3L	7299038	3L_7299038_SNP [dm3] 3L_7305938_SNP [dm6]	T	C	2.537e^-4	0.708	INTRON unc-13-4A
X	17807982	X_17807982_SNP [dm3] X_17913949_SNP [dm6]	C	T	2.540e^-4	0.708	INTRON CG6847
3L	12930811	3L_12930811_SNP [dm3] 3L_12937711_SNP [dm6]	A	G	2.541e^-4	0.708	INTERGENIC
X	21181768	X_21181768_SNP [dm3] X_21310741_SNP [dm6]	A	G	2.548e^-4	0.708	SYNONYMOUS_CODING CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4032812	3L_4032812_SNP [dm3] 3L_4032812_SNP [dm6]	T	C	2.551e^-4	0.708	SYNONYMOUS_CODING Gr64d UTR_5_PRIME Gr64e UPSTREAM Gr64e DOWNSTREAM Gr64b & 1 other
2L	13497446	2L_13497446_SNP [dm3] 2L_13497446_SNP [dm6]	A	T	2.555e^-4	0.708	INTRON CG42784
3R	9614058	3R_9614058_SNP [dm3] 3R_13788336_SNP [dm6]	A	T	2.558e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12152228	3L_12152228_SNP [dm3] 3L_12159128_SNP [dm6]	T	G	2.566e^-4	0.708	INTRON CG9760
3L	17698371	3L_17698371_SNP [dm3] 3L_17705271_SNP [dm6]	T	A	2.569e^-4	0.708	INTRON Ccn
3R	11992725	3R_11992725_SNP [dm3] 3R_16167003_SNP [dm6]	T	A	2.569e^-4	0.708	INTRON CG6006
X	17176893	X_17176893_SNP [dm3] X_17282860_SNP [dm6]	A	G	2.569e^-4	0.708	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445	TF binding site mE1_TFBS_inv
X	16599214	X_16599214_SNP [dm3] X_16705181_SNP [dm6]	A	T	2.571e^-4	0.708	UTR_3_PRIME CG4653 DOWNSTREAM CG9672 INTRON CG4678
2R	16488445	2R_16488445_SNP [dm3] 2R_20600940_SNP [dm6]	G	T	2.574e^-4	0.708	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5457327	2L_5457327_SNP [dm3] 2L_5457327_SNP [dm6]	G	A	2.577e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	12399910	3L_12399910_SNP [dm3] 3L_12406810_SNP [dm6]	A	C	2.578e^-4	0.708	INTRON CG32103
3L	11525019	3L_11525019_SNP [dm3] 3L_11531919_SNP [dm6]	C	T	2.581e^-4	0.708	INTRON Mob2
2L	15093342	2L_15093342_SNP [dm3] 2L_15093342_SNP [dm6]	A	T	2.588e^-4	0.708	INTRON CG15270
2L	19268368	2L_19268368_SNP [dm3] 2L_19268368_SNP [dm6]	A	C	2.588e^-4	0.708	DOWNSTREAM CR44190 INTERGENIC
X	14631278	X_14631278_SNP [dm3] X_14737245_SNP [dm6]	T	G	2.588e^-4	0.708	INTRON NetB
2L	13670382	2L_13670382_SNP [dm3] 2L_13670382_SNP [dm6]	C	A	2.592e^-4	0.708	DOWNSTREAM CG18507 INTRON CG18507
3R	26460731	3R_26460731_INS [dm3] 3R_30635009_INS [dm6]	C	CAC	2.593e^-4	0.708	INTERGENIC
3R	9614538	3R_9614538_SNP [dm3] 3R_13788816_SNP [dm6]	T	C	2.601e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9528524	2R_9528524_SNP [dm3] 2R_13641019_SNP [dm6]	C	T	2.607e^-4	0.708	INTRON fas
3L	21114745	3L_21114745_SNP [dm3] 3L_21121645_SNP [dm6]	G	C	2.612e^-4	0.708	UPSTREAM CG43938 INTRON ko	TF binding site mE1_TFBS_cad
2R	17023726	2R_17023726_SNP [dm3] 2R_21136221_SNP [dm6]	T	A	2.613e^-4	0.708	INTRON Magi	TF binding site mE1_TFBS_sens
X	20771841	X_20771841_SNP [dm3] X_20900814_SNP [dm6]	C	T	2.630e^-4	0.708	INTRON shakB
X	4622495	X_4622495_SNP [dm3] X_4728462_SNP [dm6]	A	T	2.632e^-4	0.708	UTR_3_PRIME Proc-R
3L	18813717	3L_18813717_SNP [dm3] 3L_18820617_SNP [dm6]	A	C	2.635e^-4	0.708	START_GAINED CG14073 UTR_5_PRIME CG14073 UPSTREAM HipHop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18513788	2L_18513788_SNP [dm3] 2L_18513788_SNP [dm6]	C	T	2.636e^-4	0.708	DOWNSTREAM CG10178 INTERGENIC
2R	18365667	2R_18365667_SNP [dm3] 2R_22478162_SNP [dm6]	A	G	2.645e^-4	0.708	UPSTREAM CG45063 & 1 other INTERGENIC
3R	22874263	3R_22874263_SNP [dm3] 3R_27048541_SNP [dm6]	G	A	2.649e^-4	0.708	UPSTREAM TwdlT INTRON RYa-R
2R	6961164	2R_6961164_SNP [dm3] 2R_11073659_SNP [dm6]	G	C	2.657e^-4	0.708	INTRON luna	TF binding site mE1_TFBS_HSA
3L	14349988	3L_14349988_SNP [dm3] 3L_14356888_SNP [dm6]	C	A	2.659e^-4	0.708	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19615970	2R_19615970_SNP [dm3] 2R_23728447_SNP [dm6]	T	A	2.661e^-4	0.708	INTRON Sesn
3L	6760033	3L_6760033_SNP [dm3] 3L_6766933_SNP [dm6]	C	T	2.661e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	18830670	3L_18830670_SNP [dm3] 3L_18837570_SNP [dm6]	C	G	2.662e^-4	0.708	INTRON Indy
2L	11037919	2L_11037919_DEL [dm3] 2L_11037919_DEL [dm6]	AC	A	2.663e^-4	0.708	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	16488363	2R_16488363_SNP [dm3] 2R_20600858_SNP [dm6]	G	T	2.669e^-4	0.708	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16800419	2R_16800419_SNP [dm3] 2R_20912914_SNP [dm6]	A	T	2.669e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13121727	3L_13121727_SNP [dm3] 3L_13128627_SNP [dm6]	T	A	2.670e^-4	0.708	INTERGENIC
2L	17362971	2L_17362971_SNP [dm3] 2L_17362971_SNP [dm6]	T	A	2.672e^-4	0.708	UPSTREAM CG31804 INTERGENIC
3L	12668639	3L_12668639_SNP [dm3] 3L_12675539_SNP [dm6]	T	C	2.684e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_sens
2L	18550980	2L_18550980_SNP [dm3] 2L_18550980_SNP [dm6]	A	G	2.687e^-4	0.708	INTRON Pde11
X	4613841	X_4613841_SNP [dm3] X_4719808_SNP [dm6]	G	C	2.687e^-4	0.708	INTRON Proc-R
3R	16565042	3R_16565042_SNP [dm3] 3R_20739320_SNP [dm6]	G	T	2.689e^-4	0.708	UPSTREAM CG17267 & 1 other DOWNSTREAM cdc2c INTERGENIC
3R	20570615	3R_20570615_SNP [dm3] 3R_24744893_SNP [dm6]	C	A	2.691e^-4	0.708	SYNONYMOUS_CODING tok	TF binding site mE1_TFBS_chinmo
2L	19270170	2L_19270170_SNP [dm3] 2L_19270170_SNP [dm6]	T	C	2.693e^-4	0.708	INTRON CR44190
2L	6388687	2L_6388687_SNP [dm3] 2L_6388687_SNP [dm6]	T	C	2.694e^-4	0.708	INTRON CG42368
3L	16066215	3L_16066215_SNP [dm3] 3L_16073115_SNP [dm6]	T	A	2.696e^-4	0.708	UPSTREAM Mbs INTRON Mbs
X	17808225	X_17808225_SNP [dm3] X_17914192_SNP [dm6]	A	C	2.698e^-4	0.708	INTRON CG6847
X	19342749	X_19342749_SNP [dm3] X_19448716_SNP [dm6]	T	C	2.699e^-4	0.708	INTRON kek5
X	18290430	X_18290430_SNP [dm3] X_18396397_SNP [dm6]	G	T	2.701e^-4	0.708	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12912092	3L_12912092_SNP [dm3] 3L_12918992_SNP [dm6]	A	C	2.702e^-4	0.708	INTERGENIC
3L	13222026	3L_13222026_SNP [dm3] 3L_13228926_SNP [dm6]	C	T	2.704e^-4	0.708	START_GAINED caps UTR_5_PRIME caps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16458650	3L_16458650_SNP [dm3] 3L_16465550_SNP [dm6]	T	C	2.706e^-4	0.708	INTRON CG33158
2L	16822685	2L_16822685_SNP [dm3] 2L_16822685_SNP [dm6]	A	G	2.706e^-4	0.708	INTRON mdy & 1 other
2L	16089172	2L_16089172_SNP [dm3] 2L_16089172_SNP [dm6]	T	A	2.707e^-4	0.708	INTERGENIC
3R	23293035	3R_23293035_SNP [dm3] 3R_27467313_SNP [dm6]	C	T	2.713e^-4	0.708	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
3R	14137026	3R_14137026_SNP [dm3] 3R_18311304_SNP [dm6]	A	T	2.714e^-4	0.708	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11037936	2L_11037936_DEL [dm3] 2L_11037936_DEL [dm6]	GTA	G	2.717e^-4	0.708	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	11037940	2L_11037940_DEL [dm3] 2L_11037940_DEL [dm6]	GTATCTTA	G	2.717e^-4	0.708	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	13933849	2L_13933849_SNP [dm3] 2L_13933849_SNP [dm6]	C	T	2.717e^-4	0.708	INTRON Ance-3 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	18913569	X_18913569_DEL [dm3] X_19019536_DEL [dm6]	AAA	A	2.727e^-4	0.708	INTRON CG43759
2L	4108952	2L_4108952_SNP [dm3] 2L_4108952_SNP [dm6]	T	A	2.738e^-4	0.708	INTRON ed
2L	4960428	2L_4960428_SNP [dm3] 2L_4960428_SNP [dm6]	T	C	2.740e^-4	0.708	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9612137	3L_9612137_SNP [dm3] 3L_9619037_SNP [dm6]	G	C	2.742e^-4	0.708	INTRON LanB2	TF binding site mE1_TFBS_cad
3R	26460218	3R_26460218_SNP [dm3] 3R_30634496_SNP [dm6]	C	T	2.746e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16958745	2R_16958745_SNP [dm3] 2R_21071240_SNP [dm6]	C	T	2.754e^-4	0.708	INTRON CG10527 EXON CR44704	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22995658	3L_22995658_SNP [dm3] 3L_23002558_SNP [dm6]	A	G	2.756e^-4	0.708	INTRON nrm
2L	3214292	2L_3214292_SNP [dm3] 2L_3214292_SNP [dm6]	T	C	2.757e^-4	0.708	INTERGENIC
2L	19199101	2L_19199101_SNP [dm3] 2L_19199101_SNP [dm6]	C	T	2.761e^-4	0.708	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18804362	3L_18804362_SNP [dm3] 3L_18811262_SNP [dm6]	T	C	2.765e^-4	0.708	INTRON CG14073	TF binding site mE1_TFBS_kn
3L	11291831	3L_11291831_SNP [dm3] 3L_11298731_SNP [dm6]	C	T	2.765e^-4	0.708	INTERGENIC
3L	7899655	3L_7899655_SNP [dm3] 3L_7906555_SNP [dm6]	T	A	2.765e^-4	0.708	INTRON pbl
X	14245047	X_14245047_SNP [dm3] X_14351014_SNP [dm6]	A	T	2.765e^-4	0.708	INTRON dpr8
2L	18513993	2L_18513993_SNP [dm3] 2L_18513993_SNP [dm6]	A	T	2.767e^-4	0.708	DOWNSTREAM CG10178 INTERGENIC
3R	7839752	3R_7839752_SNP [dm3] 3R_12014030_SNP [dm6]	G	A	2.774e^-4	0.708	NON_SYNONYMOUS_CODING GCC185 DOWNSTREAM CG3313	TF binding site mE1_TFBS_cad
2L	15864068	2L_15864068_DEL [dm3] 2L_15864068_DEL [dm6]	GCGG	T	2.777e^-4	0.708	DOWNSTREAM CR42791 & 1 other INTERGENIC
2L	16599745	2L_16599745_SNP [dm3] 2L_16599745_SNP [dm6]	T	G	2.784e^-4	0.708	INTRON CG42389
2R	11976376	2R_11976376_SNP [dm3] 2R_16088871_SNP [dm6]	A	T	2.786e^-4	0.708	INTRON Dg
X	17179019	X_17179019_SNP [dm3] X_17284986_SNP [dm6]	G	C	2.788e^-4	0.708	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3L	11787840	3L_11787840_SNP [dm3] 3L_11794740_SNP [dm6]	G	A	2.791e^-4	0.708	SPLICE_SITE_REGION CG10907 UPSTREAM Klp68D INTRON CG10907
3R	11992716	3R_11992716_SNP [dm3] 3R_16166994_SNP [dm6]	C	A	2.792e^-4	0.708	INTRON CG6006
3L	15507970	3L_15507970_SNP [dm3] 3L_15514870_SNP [dm6]	G	A	2.793e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	16868214	X_16868214_SNP [dm3] X_16974181_SNP [dm6]	T	C	2.795e^-4	0.708	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	18513938	2L_18513938_SNP [dm3] 2L_18513938_SNP [dm6]	C	T	2.804e^-4	0.708	DOWNSTREAM CG10178 INTERGENIC
2L	1719891	2L_1719891_SNP [dm3] 2L_1719891_SNP [dm6]	A	T	2.805e^-4	0.708	INTRON Rim2
2L	19277190	2L_19277190_SNP [dm3] 2L_19277190_SNP [dm6]	C	T	2.808e^-4	0.708	INTERGENIC
3L	13121890	3L_13121890_SNP [dm3] 3L_13128790_SNP [dm6]	A	G	2.814e^-4	0.708	INTERGENIC
2L	9126906	2L_9126906_INS [dm3] 2L_9126906_INS [dm6]	C	CC	2.821e^-4	0.708	UTR_5_PRIME CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	19293259	2L_19293259_SNP [dm3] 2L_19293259_SNP [dm6]	G	T	2.837e^-4	0.708	INTERGENIC
3L	13218479	3L_13218479_SNP [dm3] 3L_13225379_SNP [dm6]	C	G	2.840e^-4	0.708	INTERGENIC
3L	13267225	3L_13267225_SNP [dm3] 3L_13274125_SNP [dm6]	C	G	2.845e^-4	0.708	INTRON caps
3R	10156468	3R_10156468_SNP [dm3] 3R_14330746_SNP [dm6]	T	C	2.849e^-4	0.708	SYNONYMOUS_CODING NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7299028	3L_7299028_SNP [dm3] 3L_7305928_SNP [dm6]	T	C	2.852e^-4	0.708	INTRON unc-13-4A
2L	14424869	2L_14424869_SNP [dm3] 2L_14424869_SNP [dm6]	G	A	2.860e^-4	0.708	SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7659669	3L_7659669_SNP [dm3] 3L_7666569_SNP [dm6]	T	C	2.868e^-4	0.708	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19268375	2L_19268375_SNP [dm3] 2L_19268375_SNP [dm6]	G	A	2.871e^-4	0.708	DOWNSTREAM CR44190 INTERGENIC
2L	13871574	2L_13871574_SNP [dm3] 2L_13871574_SNP [dm6]	G	A	2.872e^-4	0.708	INTRON CenG1A	TF binding site BDTNP1_TFBS_twi
3L	12151218	3L_12151218_SNP [dm3] 3L_12158118_SNP [dm6]	A	G	2.878e^-4	0.708	SYNONYMOUS_CODING CG9760	TF binding site mE1_TFBS_cad
2L	4583379	2L_4583379_SNP [dm3] 2L_4583379_SNP [dm6]	C	G	2.881e^-4	0.708	UPSTREAM CR43716 INTRON dp
X	8916029	X_8916029_SNP [dm3] X_9021996_SNP [dm6]	C	T	2.891e^-4	0.708	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	11485602	3L_11485602_SNP [dm3] 3L_11492502_SNP [dm6]	G	T	2.892e^-4	0.708	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3135756	3L_3135756_SNP [dm3] 3L_3135756_SNP [dm6]	T	C	2.896e^-4	0.708	INTRON CG11537
3L	4948636	3L_4948636_SNP [dm3] 3L_4948636_SNP [dm6]	A	T	2.898e^-4	0.708	INTRON Con
3L	9132999	3L_9132999_SNP [dm3] 3L_9139899_SNP [dm6]	T	A	2.900e^-4	0.708	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad
3R	12243804	3R_12243804_SNP [dm3] 3R_16418082_SNP [dm6]	A	T	2.912e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5457348	2L_5457348_SNP [dm3] 2L_5457348_SNP [dm6]	A	G	2.912e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	23303027	3R_23303027_SNP [dm3] 3R_27477305_SNP [dm6]	C	G	2.929e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14348130	3L_14348130_SNP [dm3] 3L_14355030_SNP [dm6]	C	A	2.929e^-4	0.708	INTRON fz	TF binding site BDTNP1_TFBS_twi
3L	1146605	3L_1146605_SNP [dm3] 3L_1146605_SNP [dm6]	T	C	2.929e^-4	0.708	INTRON bab2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26353159	3R_26353159_SNP [dm3] 3R_30527437_SNP [dm6]	A	G	2.932e^-4	0.708	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	14311656	2L_14311656_SNP [dm3] 2L_14311656_SNP [dm6]	T	A	2.933e^-4	0.708	INTRON wb
3R	20100276	3R_20100276_SNP [dm3] 3R_24274554_SNP [dm6]	C	T	2.934e^-4	0.708	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15766762	3L_15766762_SNP [dm3] 3L_15773662_SNP [dm6]	C	T	2.938e^-4	0.708	INTERGENIC
X	16071535	X_16071535_SNP [dm3] X_16177502_SNP [dm6]	A	G	2.939e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6456780	3L_6456780_SNP [dm3] 3L_6463680_SNP [dm6]	C	T	2.940e^-4	0.708	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3R	11990455	3R_11990455_INS [dm3] 3R_16164733_INS [dm6]	G	GTGG	2.940e^-4	0.708	INTRON CG6006
X	5749415	X_5749415_SNP [dm3] X_5855382_SNP [dm6]	T	G	2.944e^-4	0.708	DOWNSTREAM CG43136 INTERGENIC
3R	26458588	3R_26458588_SNP [dm3] 3R_30632866_SNP [dm6]	T	A	2.949e^-4	0.708	INTERGENIC
3L	3661975	3L_3661975_SNP [dm3] 3L_3661975_SNP [dm6]	T	C	2.950e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8759314	2L_8759314_SNP [dm3] 2L_8759314_SNP [dm6]	G	A	2.952e^-4	0.708	INTERGENIC
3L	2141428	3L_2141428_SNP [dm3] 3L_2141428_SNP [dm6]	G	A	2.955e^-4	0.708	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12734829	3R_12734829_SNP [dm3] 3R_16909107_SNP [dm6]	A	T	2.955e^-4	0.708	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	14643250	3R_14643250_SNP [dm3] 3R_18817528_SNP [dm6]	A	G	2.957e^-4	0.708	INTRON CG18208
3L	9252440	3L_9252440_SNP [dm3] 3L_9259340_SNP [dm6]	C	T	2.959e^-4	0.708	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6745885	3L_6745885_SNP [dm3] 3L_6752785_SNP [dm6]	T	C	2.961e^-4	0.708	UPSTREAM CG8549 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2R	9793010	2R_9793010_SNP [dm3] 2R_13905505_SNP [dm6]	A	T	2.970e^-4	0.708	SPLICE_SITE_REGION shot INTRON shot
3L	6753439	3L_6753439_SNP [dm3] 3L_6760339_SNP [dm6]	C	T	2.975e^-4	0.708	NON_SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13378084	3R_13378084_SNP [dm3] 3R_17552362_SNP [dm6]	G	A	2.976e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21688432	3R_21688432_SNP [dm3] 3R_25862710_SNP [dm6]	T	A	2.978e^-4	0.708	INTRON CG5890
3L	16851554	3L_16851554_SNP [dm3] 3L_16858454_SNP [dm6]	C	A	2.978e^-4	0.708	UTR_3_PRIME sina UPSTREAM sinah INTRON Rh4
2L	722404	2L_722404_SNP [dm3] 2L_722404_SNP [dm6]	A	G	2.986e^-4	0.708	INTERGENIC
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	2.989e^-4	0.708	INTRON nwk
3L	10680985	3L_10680985_SNP [dm3] 3L_10687885_SNP [dm6]	T	A	2.994e^-4	0.708	SYNONYMOUS_CODING simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25850804	3R_25850804_SNP [dm3] 3R_30025082_SNP [dm6]	C	T	2.995e^-4	0.708	INTRON Axn
2R	12193341	2R_12193341_INS [dm3] 2R_16305836_INS [dm6]	T	TATACTAA	2.996e^-4	0.708	EXON CR45232
2R	13661441	2R_13661441_SNP [dm3] 2R_17773936_SNP [dm6]	A	T	2.999e^-4	0.708	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2R	13661442	2R_13661442_SNP [dm3] 2R_17773937_SNP [dm6]	A	T	2.999e^-4	0.708	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
3L	11525630	3L_11525630_SNP [dm3] 3L_11532530_SNP [dm6]	G	C	3.001e^-4	0.708	INTRON Mob2
2R	8281773	2R_8281773_SNP [dm3] 2R_12394268_SNP [dm6]	G	C	3.006e^-4	0.708	UPSTREAM CG30048 INTRON Or49a
3R	22984247	3R_22984247_SNP [dm3] 3R_27158525_SNP [dm6]	C	G	3.006e^-4	0.708	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2985728	X_2985728_SNP [dm3] X_3091695_SNP [dm6]	T	G	3.008e^-4	0.708	INTRON kirre	regulatory region REDfly_CRMs
2L	12642754	2L_12642754_INS [dm3] 2L_12642754_INS [dm6]	A	AA	3.010e^-4	0.708	INTRON Ref2
2L	4259887	2L_4259887_SNP [dm3] 2L_4259887_SNP [dm6]	A	G	3.015e^-4	0.709	DOWNSTREAM CR44080 INTERGENIC
3L	10163092	3L_10163092_SNP [dm3] 3L_10169992_SNP [dm6]	A	G	3.033e^-4	0.712	INTRON dpr10
2L	9123433	2L_9123433_SNP [dm3] 2L_9123433_SNP [dm6]	G	T	3.036e^-4	0.712	UPSTREAM CR44615 INTERGENIC
2L	19291430	2L_19291430_SNP [dm3] 2L_19291430_SNP [dm6]	C	T	3.040e^-4	0.712	INTERGENIC
2L	4270415	2L_4270415_SNP [dm3] 2L_4270415_SNP [dm6]	G	A	3.044e^-4	0.712	INTERGENIC
2L	11037875	2L_11037875_SNP [dm3] 2L_11037875_SNP [dm6]	A	C	3.049e^-4	0.712	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4749690	2L_4749690_SNP [dm3] 2L_4749690_SNP [dm6]	A	G	3.066e^-4	0.715	INTRON CG15630
2L	3969859	2L_3969859_SNP [dm3] 2L_3969859_SNP [dm6]	A	T	3.073e^-4	0.716	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14590869	3L_14590869_SNP [dm3] 3L_14597769_SNP [dm6]	T	C	3.079e^-4	0.716	INTRON HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	3518429	2L_3518429_SNP [dm3] 2L_3518429_SNP [dm6]	T	A	3.081e^-4	0.716	SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18229896	3R_18229896_SNP [dm3] 3R_22404174_SNP [dm6]	G	T	3.097e^-4	0.717	INTRON CG13856
3L	16543018	3L_16543018_SNP [dm3] 3L_16549918_SNP [dm6]	A	G	3.098e^-4	0.717	INTERGENIC
3R	15245868	3R_15245868_SNP [dm3] 3R_19420146_SNP [dm6]	A	G	3.098e^-4	0.717	INTRON CG31221
3L	14064768	3L_14064768_SNP [dm3] 3L_14071668_SNP [dm6]	T	C	3.104e^-4	0.717	UPSTREAM Pex1 DOWNSTREAM CG32138 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	3.109e^-4	0.717	INTRON nwk
3R	24237872	3R_24237872_SNP [dm3] 3R_28412150_SNP [dm6]	C	A	3.109e^-4	0.717	INTERGENIC
3L	11485392	3L_11485392_SNP [dm3] 3L_11492292_SNP [dm6]	G	C	3.116e^-4	0.718	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13229133	2L_13229133_SNP [dm3] 2L_13229133_SNP [dm6]	A	G	3.126e^-4	0.718	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	12547852	3L_12547852_SNP [dm3] 3L_12554752_SNP [dm6]	A	C	3.131e^-4	0.718	INTRON sowah
2L	5788025	2L_5788025_SNP [dm3] 2L_5788025_SNP [dm6]	A	T	3.133e^-4	0.718	INTRON CG9171
3R	17090555	3R_17090555_SNP [dm3] 3R_21264833_SNP [dm6]	G	C	3.133e^-4	0.718	SYNONYMOUS_CODING ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9660058	3R_9660058_SNP [dm3] 3R_13834336_SNP [dm6]	T	A	3.140e^-4	0.718	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
X	5180616	X_5180616_SNP [dm3] X_5286583_SNP [dm6]	T	C	3.142e^-4	0.718	INTERGENIC
3L	14590718	3L_14590718_SNP [dm3] 3L_14597618_SNP [dm6]	G	A	3.143e^-4	0.718	INTRON HGTX	TF binding site BDTNP1_TFBS_slp1
3R	23315487	3R_23315487_SNP [dm3] 3R_27489765_SNP [dm6]	G	A	3.157e^-4	0.72	UTR_3_PRIME Gr98a
3R	5060184	3R_5060184_SNP [dm3] 3R_9234462_SNP [dm6]	C	T	3.170e^-4	0.72	UTR_5_PRIME pum	TF binding site BDTNP1_TFBS_dl
3R	11992712	3R_11992712_SNP [dm3] 3R_16166990_SNP [dm6]	C	A	3.178e^-4	0.72	INTRON CG6006
3L	6760044	3L_6760044_SNP [dm3] 3L_6766944_SNP [dm6]	T	C	3.178e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
X	3244859	X_3244859_SNP [dm3] X_3350826_SNP [dm6]	A	G	3.190e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7820372	2R_7820372_SNP [dm3] 2R_11932867_SNP [dm6]	A	C	3.190e^-4	0.72	INTERGENIC
2L	13572158	2L_13572158_SNP [dm3] 2L_13572158_SNP [dm6]	G	A	3.203e^-4	0.72	INTRON kuz
2R	8486705	2R_8486705_SNP [dm3] 2R_12599200_SNP [dm6]	T	G	3.205e^-4	0.72	INTRON Amph
X	16868043	X_16868043_SNP [dm3] X_16974010_SNP [dm6]	C	T	3.213e^-4	0.72	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	5944522	3L_5944522_SNP [dm3] 3L_5951422_SNP [dm6]	G	A	3.214e^-4	0.72	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22984209	3R_22984209_SNP [dm3] 3R_27158487_SNP [dm6]	A	C	3.214e^-4	0.72	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1252274	3L_1252274_SNP [dm3] 3L_1252274_SNP [dm6]	A	G	3.219e^-4	0.72	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
2R	10982494	2R_10982494_SNP [dm3] 2R_15094989_SNP [dm6]	T	C	3.219e^-4	0.72	INTERGENIC
2R	12011813	2R_12011813_SNP [dm3] 2R_16124308_SNP [dm6]	T	A	3.220e^-4	0.72	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2L	8251973	2L_8251973_SNP [dm3] 2L_8251973_SNP [dm6]	A	G	3.221e^-4	0.72	INTRON CG8086
2R	19330602	2R_19330602_SNP [dm3] 2R_23443079_SNP [dm6]	G	T	3.224e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26354574	3R_26354574_SNP [dm3] 3R_30528852_SNP [dm6]	C	T	3.227e^-4	0.72	DOWNSTREAM CR45552 INTRON CR45552
X	20772198	X_20772198_SNP [dm3] X_20901171_SNP [dm6]	T	A	3.229e^-4	0.72	INTRON shakB
2L	4307819	2L_4307819_SNP [dm3] 2L_4307819_SNP [dm6]	T	A	3.229e^-4	0.72	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14064769	3L_14064769_SNP [dm3] 3L_14071669_SNP [dm6]	A	T	3.231e^-4	0.72	UPSTREAM Pex1 DOWNSTREAM CG32138 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	2359450	X_2359450_SNP [dm3] X_2465417_SNP [dm6]	A	G	3.233e^-4	0.72	INTRON boi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11191338	2L_11191338_SNP [dm3] 2L_11191338_SNP [dm6]	T	C	3.236e^-4	0.72	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14064764	3L_14064764_SNP [dm3] 3L_14071664_SNP [dm6]	G	A	3.241e^-4	0.72	UPSTREAM Pex1 DOWNSTREAM CG32138 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21364766	X_21364766_SNP [dm3] X_21493739_SNP [dm6]	C	T	3.249e^-4	0.72	INTERGENIC
2L	5816135	2L_5816135_SNP [dm3] 2L_5816135_SNP [dm6]	T	C	3.249e^-4	0.72	INTERGENIC
3R	23119298	3R_23119298_SNP [dm3] 3R_27293576_SNP [dm6]	C	T	3.253e^-4	0.72	DOWNSTREAM CG3339 INTERGENIC
2L	5457328	2L_5457328_SNP [dm3] 2L_5457328_SNP [dm6]	G	A	3.261e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	12730359	2L_12730359_SNP [dm3] 2L_12730359_SNP [dm6]	C	T	3.279e^-4	0.72	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6674120	2R_6674120_SNP [dm3] 2R_10786615_SNP [dm6]	G	C	3.280e^-4	0.72	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8294112	2R_8294112_SNP [dm3] 2R_12406607_SNP [dm6]	T	C	3.289e^-4	0.72	UTR_3_PRIME Cpr49Af DOWNSTREAM Cpr49Af
X	18439521	X_18439521_SNP [dm3] X_18545488_SNP [dm6]	C	T	3.292e^-4	0.72	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17698447	3L_17698447_SNP [dm3] 3L_17705347_SNP [dm6]	T	A	3.293e^-4	0.72	INTRON Ccn
2L	907838	2L_907838_SNP [dm3] 2L_907838_SNP [dm6]	C	G	3.297e^-4	0.72	INTERGENIC
3R	6858993	3R_6858993_SNP [dm3] 3R_11033271_SNP [dm6]	C	G	3.304e^-4	0.72	INTRON CG34114
3R	19388570	3R_19388570_SNP [dm3] 3R_23562848_SNP [dm6]	C	A	3.317e^-4	0.72	INTRON beat-IV	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	7839018	3R_7839018_SNP [dm3] 3R_12013296_SNP [dm6]	C	T	3.319e^-4	0.72	SYNONYMOUS_CODING GCC185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15299780	3L_15299780_SNP [dm3] 3L_15306680_SNP [dm6]	T	A	3.320e^-4	0.72	SYNONYMOUS_CODING CG7255
3R	16006780	3R_16006780_SNP [dm3] 3R_20181058_SNP [dm6]	T	G	3.321e^-4	0.72	INTERGENIC
3R	25650941	3R_25650941_SNP [dm3] 3R_29825219_SNP [dm6]	C	A	3.322e^-4	0.72	NON_SYNONYMOUS_CODING neo
3R	24450815	3R_24450815_SNP [dm3] 3R_28625093_SNP [dm6]	A	C	3.335e^-4	0.72	INTRON CG10011
2R	16926952	2R_16926952_SNP [dm3] 2R_21039447_SNP [dm6]	T	C	3.336e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16006783	3R_16006783_SNP [dm3] 3R_20181061_SNP [dm6]	C	T	3.340e^-4	0.72	INTERGENIC
2R	16288302	2R_16288302_SNP [dm3] 2R_20400797_SNP [dm6]	A	G	3.340e^-4	0.72	INTERGENIC
2R	9755631	2R_9755631_SNP [dm3] 2R_13868126_SNP [dm6]	G	T	3.344e^-4	0.72	INTRON shot
3R	14034486	3R_14034486_SNP [dm3] 3R_18208764_SNP [dm6]	A	T	3.345e^-4	0.72	UPSTREAM CG44158 INTRON CG7985
3R	25226442	3R_25226442_SNP [dm3] 3R_29400720_SNP [dm6]	G	A	3.348e^-4	0.72	INTRON Ptp99A	TF binding site mE1_TFBS_inv
3L	9013729	3L_9013729_SNP [dm3] 3L_9020629_SNP [dm6]	T	G	3.356e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	9008792	3L_9008792_SNP [dm3] 3L_9015692_SNP [dm6]	C	T	3.356e^-4	0.72	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4273352	2L_4273352_SNP [dm3] 2L_4273352_SNP [dm6]	G	T	3.359e^-4	0.72	INTERGENIC
2R	7151302	2R_7151302_DEL [dm3] 2R_11263797_DEL [dm6]	AG	A	3.361e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_ttk
X	16618461	X_16618461_SNP [dm3] X_16724428_SNP [dm6]	A	G	3.370e^-4	0.72	INTRON CG32572	TF binding site mE1_TFBS_HSA
3L	16481217	3L_16481217_INS [dm3] 3L_16488117_INS [dm6]	T	TT	3.371e^-4	0.72	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3R	3552839	3R_3552839_SNP [dm3] 3R_7727117_SNP [dm6]	G	A	3.382e^-4	0.72	INTERGENIC
X	8514163	X_8514163_SNP [dm3] X_8620130_SNP [dm6]	A	C	3.385e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18740291	2L_18740291_SNP [dm3] 2L_18740291_SNP [dm6]	G	A	3.391e^-4	0.72	UPSTREAM CG15167 & 1 other INTERGENIC
3L	11525633	3L_11525633_SNP [dm3] 3L_11532533_SNP [dm6]	C	A	3.393e^-4	0.72	INTRON Mob2
X	13428654	X_13428654_SNP [dm3] X_13534621_SNP [dm6]	T	G	3.396e^-4	0.72	NON_SYNONYMOUS_CODING CG15756
3L	11664805	3L_11664805_DEL [dm3] 3L_11671705_DEL [dm6]	AA	A	3.397e^-4	0.72	INTRON CG32085
2R	12011568	2R_12011568_SNP [dm3] 2R_16124063_SNP [dm6]	C	T	3.398e^-4	0.72	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
3R	11603256	3R_11603256_SNP [dm3] 3R_15777534_SNP [dm6]	C	T	3.415e^-4	0.72	SYNONYMOUS_CODING CG4525
3L	7262664	3L_7262664_SNP [dm3] 3L_7269564_SNP [dm6]	T	G	3.417e^-4	0.72	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3R	25033219	3R_25033219_SNP [dm3] 3R_29207497_SNP [dm6]	A	C	3.419e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	9008297	3L_9008297_SNP [dm3] 3L_9015197_SNP [dm6]	C	T	3.433e^-4	0.72	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5076294	2R_5076294_SNP [dm3] 2R_9188789_SNP [dm6]	C	T	3.434e^-4	0.72	SYNONYMOUS_CODING CG8026 UTR_3_PRIME CG45085
3R	26456121	3R_26456121_SNP [dm3] 3R_30630399_SNP [dm6]	T	C	3.438e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11487174	3L_11487174_SNP [dm3] 3L_11494074_SNP [dm6]	C	A	3.448e^-4	0.72	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12193346	2R_12193346_SNP [dm3] 2R_16305841_SNP [dm6]	T	C	3.451e^-4	0.72	EXON CR45232
X	3140901	X_3140901_DEL [dm3] X_3246868_DEL [dm6]	TT	T	3.460e^-4	0.72	INTRON dnc
3L	14650368	3L_14650368_SNP [dm3] 3L_14657268_SNP [dm6]	C	A	3.462e^-4	0.72	INTRON dlp	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	5134617	X_5134617_SNP [dm3] X_5240584_SNP [dm6]	G	C	3.470e^-4	0.72	INTRON CG15465 & 1 other
3R	26612735	3R_26612735_INS [dm3] 3R_30787013_INS [dm6]	C	CA	3.479e^-4	0.72	UTR_3_PRIME zfh1
3R	25008422	3R_25008422_SNP [dm3] 3R_29182700_SNP [dm6]	G	T	3.484e^-4	0.72	INTRON CG14509
3R	25033234	3R_25033234_SNP [dm3] 3R_29207512_SNP [dm6]	A	T	3.484e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12505180	3L_12505180_SNP [dm3] 3L_12512080_SNP [dm6]	A	T	3.488e^-4	0.72	SYNONYMOUS_CODING sti
2L	2923568	2L_2923568_SNP [dm3] 2L_2923568_SNP [dm6]	G	A	3.491e^-4	0.72	INTRON lilli
2R	7399854	2R_7399854_SNP [dm3] 2R_11512349_SNP [dm6]	C	T	3.495e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2842342	2L_2842342_SNP [dm3] 2L_2842342_SNP [dm6]	G	T	3.497e^-4	0.72	NON_SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
X	6165049	X_6165049_SNP [dm3] X_6271016_SNP [dm6]	G	A	3.502e^-4	0.72	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18358753	X_18358753_SNP [dm3] X_18464720_SNP [dm6]	A	T	3.507e^-4	0.72	INTRON CG32547
3R	19588208	3R_19588208_SNP [dm3] 3R_23762486_SNP [dm6]	A	T	3.507e^-4	0.72	INTRON CG10217	TF binding site mE1_TFBS_sens
3R	25273238	3R_25273238_SNP [dm3] 3R_29447516_SNP [dm6]	A	G	3.514e^-4	0.72	INTRON Ptp99A
2L	14970794	2L_14970794_SNP [dm3] 2L_14970794_SNP [dm6]	C	T	3.520e^-4	0.72	INTRON CG42313
2L	19293113	2L_19293113_SNP [dm3] 2L_19293113_SNP [dm6]	T	C	3.524e^-4	0.72	INTERGENIC
3R	22984339	3R_22984339_SNP [dm3] 3R_27158617_SNP [dm6]	T	C	3.529e^-4	0.72	INTRON grass	TF binding site mE1_TFBS_chinmo
X	17244579	X_17244579_SNP [dm3] X_17350546_SNP [dm6]	T	G	3.529e^-4	0.72	INTERGENIC
3R	22954757	3R_22954757_SNP [dm3] 3R_27129035_SNP [dm6]	A	T	3.552e^-4	0.72	INTRON CG6051
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	3.555e^-4	0.72	INTRON klg
3L	9246887	3L_9246887_SNP [dm3] 3L_9253787_SNP [dm6]	C	T	3.561e^-4	0.72	INTRON GluRIB
2R	7151305	2R_7151305_MNP [dm3] 2R_11263800_MNP [dm6]	TTA	CAT	3.569e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_ttk
3L	2213874	3L_2213874_SNP [dm3] 3L_2213874_SNP [dm6]	G	A	3.572e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6700859	3L_6700859_SNP [dm3] 3L_6707759_SNP [dm6]	G	A	3.573e^-4	0.72	SPLICE_SITE_REGION CG8519 INTRON CG8519
2L	4443523	2L_4443523_SNP [dm3] 2L_4443523_SNP [dm6]	A	G	3.575e^-4	0.72	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11484955	3L_11484955_SNP [dm3] 3L_11491855_SNP [dm6]	A	G	3.576e^-4	0.72	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15359045	2L_15359045_SNP [dm3] 2L_15359045_SNP [dm6]	A	G	3.586e^-4	0.72	INTERGENIC
3R	23499928	3R_23499928_SNP [dm3] 3R_27674206_SNP [dm6]	C	A	3.587e^-4	0.72	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3R	14029203	3R_14029203_SNP [dm3] 3R_18203481_SNP [dm6]	C	G	3.596e^-4	0.72	INTRON CG7985
3L	8685330	3L_8685330_SNP [dm3] 3L_8692230_SNP [dm6]	A	G	3.596e^-4	0.72	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4740662	2L_4740662_SNP [dm3] 2L_4740662_SNP [dm6]	G	A	3.612e^-4	0.72	INTRON CG15630
3L	3917309	3L_3917309_SNP [dm3] 3L_3917309_SNP [dm6]	A	T	3.613e^-4	0.72	INTRON Eip63F-1	TF binding site mE1_TFBS_cad
2R	8932254	2R_8932254_SNP [dm3] 2R_13044749_SNP [dm6]	T	C	3.616e^-4	0.72	UTR_3_PRIME CG13323	TF binding site BDTNP1_TFBS_da
3R	25084781	3R_25084781_SNP [dm3] 3R_29259059_SNP [dm6]	C	T	3.616e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26456129	3R_26456129_SNP [dm3] 3R_30630407_SNP [dm6]	C	T	3.622e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12193350	2R_12193350_SNP [dm3] 2R_16305845_SNP [dm6]	A	G	3.622e^-4	0.72	EXON CR45232
2L	1281632	2L_1281632_SNP [dm3] 2L_1281632_SNP [dm6]	C	T	3.624e^-4	0.72	INTRON robo3
2R	18841385	2R_18841385_SNP [dm3] 2R_22953862_SNP [dm6]	C	T	3.628e^-4	0.72	UPSTREAM CR32835 INTERGENIC
3L	12949699	3L_12949699_SNP [dm3] 3L_12956599_SNP [dm6]	T	A	3.635e^-4	0.72	INTERGENIC
2R	9412051	2R_9412051_SNP [dm3] 2R_13524546_SNP [dm6]	G	A	3.645e^-4	0.72	UPSTREAM CG13332 INTRON Vmat
3R	3540281	3R_3540281_SNP [dm3] 3R_7714559_SNP [dm6]	A	G	3.645e^-4	0.72	INTERGENIC
2L	6619031	2L_6619031_SNP [dm3] 2L_6619031_SNP [dm6]	C	A	3.647e^-4	0.72	UPSTREAM CR44913 INTRON CG11320
3L	6760287	3L_6760287_SNP [dm3] 3L_6767187_SNP [dm6]	C	T	3.655e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	17879472	3R_17879472_SNP [dm3] 3R_22053750_SNP [dm6]	T	C	3.656e^-4	0.72	INTRON how
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	3.657e^-4	0.72	INTRON nwk
3L	17337163	3L_17337163_SNP [dm3] 3L_17344063_SNP [dm6]	G	T	3.657e^-4	0.72	DOWNSTREAM Mip INTRON brv2
X	16063972	X_16063972_SNP [dm3] X_16169939_SNP [dm6]	C	A	3.659e^-4	0.72	INTERGENIC
X	17551083	X_17551083_SNP [dm3] X_17657050_SNP [dm6]	T	A	3.660e^-4	0.72	UPSTREAM beta-Spec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13119239	3L_13119239_SNP [dm3] 3L_13126139_SNP [dm6]	C	T	3.662e^-4	0.72	INTERGENIC
2R	3576064	2R_3576064_SNP [dm3] 2R_7688559_SNP [dm6]	G	T	3.664e^-4	0.72	INTRON CG1399
3L	11483389	3L_11483389_SNP [dm3] 3L_11490289_SNP [dm6]	T	G	3.669e^-4	0.72	INTRON chrb	TF binding site BDTNP1_TFBS_twi
X	15652688	X_15652688_SNP [dm3] X_15758655_SNP [dm6]	C	A	3.671e^-4	0.72	DOWNSTREAM CG8260 INTRON Graf
2R	9754591	2R_9754591_SNP [dm3] 2R_13867086_SNP [dm6]	A	T	3.674e^-4	0.72	INTRON shot
3L	9008250	3L_9008250_SNP [dm3] 3L_9015150_SNP [dm6]	C	G	3.676e^-4	0.72	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9326358	3L_9326358_SNP [dm3] 3L_9333258_SNP [dm6]	T	A	3.677e^-4	0.72	INTERGENIC
3L	13220292	3L_13220292_SNP [dm3] 3L_13227192_SNP [dm6]	A	T	3.677e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	12193489	2R_12193489_INS [dm3] 2R_16305984_INS [dm6]	A	AGGATACAAAAT...	3.679e^-4	0.72	EXON CR45232
X	17888219	X_17888219_SNP [dm3] X_17994186_SNP [dm6]	A	T	3.688e^-4	0.72	UTR_5_PRIME Sh INTRON Sh
2R	17110619	2R_17110619_SNP [dm3] 2R_21223114_SNP [dm6]	C	T	3.688e^-4	0.72	SYNONYMOUS_CODING ASPP
X	6675143	X_6675143_SNP [dm3] X_6781110_SNP [dm6]	C	T	3.694e^-4	0.72	UTR_3_PRIME C3G DOWNSTREAM C3G
3L	12156801	3L_12156801_SNP [dm3] 3L_12163701_SNP [dm6]	G	A	3.695e^-4	0.72	UTR_5_PRIME CG9760 DOWNSTREAM Rh7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20257485	3R_20257485_SNP [dm3] 3R_24431763_SNP [dm6]	T	A	3.702e^-4	0.72	INTRON nAChRalpha1
X	15438204	X_15438204_SNP [dm3] X_15544171_SNP [dm6]	T	C	3.704e^-4	0.72	INTRON Ac13E
2R	18279584	2R_18279584_SNP [dm3] 2R_22392079_SNP [dm6]	G	A	3.708e^-4	0.72	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3141345	X_3141345_SNP [dm3] X_3247312_SNP [dm6]	G	T	3.716e^-4	0.72	INTRON dnc
X	17081638	X_17081638_SNP [dm3] X_17187605_SNP [dm6]	A	G	3.717e^-4	0.72	INTRON baz
3L	11525634	3L_11525634_SNP [dm3] 3L_11532534_SNP [dm6]	C	G	3.726e^-4	0.72	INTRON Mob2
3L	2155683	3L_2155683_SNP [dm3] 3L_2155683_SNP [dm6]	C	A	3.731e^-4	0.72	INTRON CG15822
3R	23499880	3R_23499880_SNP [dm3] 3R_27674158_SNP [dm6]	C	T	3.734e^-4	0.72	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
3R	23293040	3R_23293040_SNP [dm3] 3R_27467318_SNP [dm6]	T	C	3.736e^-4	0.72	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
2L	5063852	2L_5063852_SNP [dm3] 2L_5063852_SNP [dm6]	C	T	3.736e^-4	0.72	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18427618	2R_18427618_SNP [dm3] 2R_22540113_SNP [dm6]	G	A	3.737e^-4	0.72	INTRON px
2L	14410277	2L_14410277_SNP [dm3] 2L_14410277_SNP [dm6]	G	A	3.744e^-4	0.72	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12892782	3L_12892782_SNP [dm3] 3L_12899682_SNP [dm6]	T	A	3.747e^-4	0.72	INTERGENIC
2L	6976971	2L_6976971_SNP [dm3] 2L_6976971_SNP [dm6]	C	T	3.750e^-4	0.72	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	14619830	2L_14619830_SNP [dm3] 2L_14619830_SNP [dm6]	A	G	3.750e^-4	0.72	DOWNSTREAM Adhr & 1 other INTRON osp
X	6170544	X_6170544_SNP [dm3] X_6276511_SNP [dm6]	A	G	3.758e^-4	0.72	DOWNSTREAM Ubi-p5E INTRON CG3566	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20433516	X_20433516_INS [dm3] X_20562489_INS [dm6]	A	AA	3.760e^-4	0.72	INTRON RunxB
3R	11512266	3R_11512266_MNP [dm3] 3R_15686544_MNP [dm6]	TTC	AAA	3.760e^-4	0.72	INTRON pxb
3L	9013982	3L_9013982_SNP [dm3] 3L_9020882_SNP [dm6]	C	T	3.762e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	10886032	3L_10886032_SNP [dm3] 3L_10892932_SNP [dm6]	T	A	3.762e^-4	0.72	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	14137019	3R_14137019_SNP [dm3] 3R_18311297_SNP [dm6]	T	A	3.765e^-4	0.72	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11525640	3L_11525640_SNP [dm3] 3L_11532540_SNP [dm6]	G	A	3.767e^-4	0.72	INTRON Mob2
3L	12553705	3L_12553705_SNP [dm3] 3L_12560605_SNP [dm6]	T	C	3.770e^-4	0.72	INTRON sowah
2R	7820335	2R_7820335_SNP [dm3] 2R_11932830_SNP [dm6]	G	A	3.771e^-4	0.72	INTERGENIC
3L	2810093	3L_2810093_SNP [dm3] 3L_2810093_SNP [dm6]	T	C	3.771e^-4	0.72	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	17060284	2L_17060284_SNP [dm3] 2L_17060284_SNP [dm6]	C	T	3.772e^-4	0.72	INTERGENIC
X	18175635	X_18175635_DEL [dm3] X_18281602_DEL [dm6]	GAGATCGCAGGTGCGGCGAA...	G	3.781e^-4	0.72	INTRON upd3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	5117679	X_5117679_INS [dm3] X_5223646_INS [dm6]	A	AATGGAATGTG...	3.781e^-4	0.72	INTRON CG15465 & 1 other
3R	11981321	3R_11981321_SNP [dm3] 3R_16155599_SNP [dm6]	A	C	3.783e^-4	0.72	NON_SYNONYMOUS_CODING CG6006	TF binding site mE1_TFBS_cad
3L	14590857	3L_14590857_SNP [dm3] 3L_14597757_SNP [dm6]	A	G	3.784e^-4	0.72	INTRON HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	10277655	3L_10277655_SNP [dm3] 3L_10284555_SNP [dm6]	T	A	3.791e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	15093340	2L_15093340_SNP [dm3] 2L_15093340_SNP [dm6]	G	A	3.793e^-4	0.72	INTRON CG15270
2R	4682739	2R_4682739_SNP [dm3] 2R_8795234_SNP [dm6]	G	A	3.793e^-4	0.72	INTERGENIC
3L	12084255	3L_12084255_SNP [dm3] 3L_12091155_SNP [dm6]	C	T	3.804e^-4	0.72	INTERGENIC
2L	7186417	2L_7186417_SNP [dm3] 2L_7186417_SNP [dm6]	T	C	3.805e^-4	0.72	SYNONYMOUS_CODING CG4496 DOWNSTREAM CG4495	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	3.805e^-4	0.72	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	5356904	2R_5356904_INS [dm3] 2R_9469399_INS [dm6]	A	AGGTTA	3.814e^-4	0.72	INTRON Camta	TF binding site mE1_TFBS_inv
3L	9612208	3L_9612208_SNP [dm3] 3L_9619108_SNP [dm6]	T	C	3.822e^-4	0.72	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	18513971	2L_18513971_SNP [dm3] 2L_18513971_SNP [dm6]	A	T	3.823e^-4	0.72	DOWNSTREAM CG10178 INTERGENIC
2L	5601308	2L_5601308_SNP [dm3] 2L_5601308_SNP [dm6]	C	T	3.825e^-4	0.72	DOWNSTREAM CG14010 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	17238066	X_17238066_SNP [dm3] X_17344033_SNP [dm6]	T	A	3.835e^-4	0.72	INTERGENIC
2R	15052883	2R_15052883_SNP [dm3] 2R_19165378_SNP [dm6]	G	A	3.838e^-4	0.72	UTR_5_PRIME CG10737 INTRON CG10737
2R	12193503	2R_12193503_SNP [dm3] 2R_16305998_SNP [dm6]	G	T	3.847e^-4	0.72	EXON CR45232
2R	18185511	2R_18185511_SNP [dm3] 2R_22298006_SNP [dm6]	T	A	3.855e^-4	0.72	DOWNSTREAM wdp INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4960176	2L_4960176_SNP [dm3] 2L_4960176_SNP [dm6]	C	T	3.857e^-4	0.72	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13413998	3R_13413998_SNP [dm3] 3R_17588276_SNP [dm6]	T	C	3.858e^-4	0.72	INTERGENIC
2L	21954440	2L_21954440_SNP [dm3] 2L_21954440_SNP [dm6]	T	A	3.859e^-4	0.72	INTERGENIC
3R	11628325	3R_11628325_SNP [dm3] 3R_15802603_SNP [dm6]	T	G	3.860e^-4	0.72	SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17430838	X_17430838_SNP [dm3] X_17536805_SNP [dm6]	G	C	3.866e^-4	0.72	INTRON CG43658
2L	3617358	2L_3617358_SNP [dm3] 2L_3617358_SNP [dm6]	C	T	3.871e^-4	0.72	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17060294	2L_17060294_SNP [dm3] 2L_17060294_SNP [dm6]	A	T	3.873e^-4	0.72	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.769e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.009544
In_3R_K	0.009534

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	10.2357	0.006
In_3R_P	6.7379	0.0344
In_3R_K	6.6025	0.0368

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2209 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	20787917	3L_20787917_SNP [dm3] 3L_20794817_SNP [dm6]	G	A	4.904e^-8	0.092	DOWNSTREAM CR43705 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10199961	2L_10199961_SNP [dm3] 2L_10199961_SNP [dm6]	C	T	1.375e^-6	0.808	SYNONYMOUS_CODING Ripalpha UPSTREAM Sur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	20780549	3L_20780549_SNP [dm3] 3L_20787449_SNP [dm6]	A	G	2.243e^-6	0.808	SYNONYMOUS_CODING CG11396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19558544	3R_19558544_SNP [dm3] 3R_23732822_SNP [dm6]	C	T	2.423e^-6	0.808	SYNONYMOUS_CODING Rpn9 UPSTREAM Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25329659	3R_25329659_SNP [dm3] 3R_29503937_SNP [dm6]	C	A	2.440e^-6	0.808	UPSTREAM Trc8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	26353092	3R_26353092_SNP [dm3] 3R_30527370_SNP [dm6]	A	T	2.764e^-6	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26460536	3R_26460536_SNP [dm3] 3R_30634814_SNP [dm6]	T	C	3.198e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26353159	3R_26353159_SNP [dm3] 3R_30527437_SNP [dm6]	A	G	3.744e^-6	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26353227	3R_26353227_SNP [dm3] 3R_30527505_SNP [dm6]	C	T	4.377e^-6	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	4.571e^-6	0.808	INTRON fru	TF binding site BDTNP1_TFBS_da
3L	10201236	3L_10201236_SNP [dm3] 3L_10208136_SNP [dm6]	A	G	5.247e^-6	0.808	INTERGENIC
3R	19203789	3R_19203789_SNP [dm3] 3R_23378067_SNP [dm6]	A	G	6.175e^-6	0.808	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_inv
2L	5514409	2L_5514409_MNP [dm3] 2L_5514409_MNP [dm6]	CCA	GAC	6.459e^-6	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9192484	3R_9192484_SNP [dm3] 3R_13366762_SNP [dm6]	G	T	6.655e^-6	0.808	SPLICE_SITE_REGION poly UTR_5_PRIME poly UPSTREAM Dic1 INTRON Dic1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5570357	3L_5570357_SNP [dm3] 3L_5577257_SNP [dm6]	C	T	8.427e^-6	0.808	UTR_5_PRIME Msr-110
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	9.674e^-6	0.808	INTRON kek6
X	22149782	X_22149782_DEL [dm3] X_22747946_DEL [dm6]	TTACCCCCGGCT...	T	9.934e^-6	0.808	INTRON CR44997
3R	23293035	3R_23293035_SNP [dm3] 3R_27467313_SNP [dm6]	C	T	1.002e^-5	0.808	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11075605	3L_11075605_SNP [dm3] 3L_11082505_SNP [dm6]	T	G	1.054e^-5	0.808	INTRON JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26354574	3R_26354574_SNP [dm3] 3R_30528852_SNP [dm6]	C	T	1.121e^-5	0.808	DOWNSTREAM CR45552 INTRON CR45552
3L	20781035	3L_20781035_SNP [dm3] 3L_20787935_SNP [dm6]	G	A	1.131e^-5	0.808	SYNONYMOUS_CODING CG11396 DOWNSTREAM Six4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8731397	3L_8731397_SNP [dm3] 3L_8738297_SNP [dm6]	T	G	1.136e^-5	0.808	INTRON Prm
2R	14175306	2R_14175306_DEL [dm3] 2R_18287801_DEL [dm6]	CGTACTAAATGGGG...	TC	1.191e^-5	0.808	UPSTREAM CG14502 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3R	26452186	3R_26452186_SNP [dm3] 3R_30626464_SNP [dm6]	G	A	1.200e^-5	0.808	UPSTREAM CR44136 DOWNSTREAM CG2267 INTERGENIC
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	1.275e^-5	0.808	INTRON jigr1
2R	5708494	2R_5708494_SNP [dm3] 2R_9820989_SNP [dm6]	C	T	1.453e^-5	0.808	SYNONYMOUS_CODING CG34033 UPSTREAM CG1648 DOWNSTREAM CG30001	TF binding site mE1_TFBS_sens
2L	19845475	2L_19845475_SNP [dm3] 2L_19845475_SNP [dm6]	A	T	1.469e^-5	0.808	UTR_5_PRIME sick INTRON sick
2L	3200669	2L_3200669_SNP [dm3] 2L_3200669_SNP [dm6]	G	C	1.529e^-5	0.808	UPSTREAM CG34393 INTERGENIC
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	1.530e^-5	0.808	INTRON beat-VI
2R	9055073	2R_9055073_SNP [dm3] 2R_13167568_SNP [dm6]	A	G	1.537e^-5	0.808	UPSTREAM Spt-I DOWNSTREAM CR45142 INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	734321	2L_734321_SNP [dm3] 2L_734321_SNP [dm6]	G	C	1.548e^-5	0.808	INTERGENIC
3L	10653278	3L_10653278_SNP [dm3] 3L_10660178_SNP [dm6]	C	T	1.671e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3919520	3L_3919520_SNP [dm3] 3L_3919520_SNP [dm6]	C	T	1.703e^-5	0.808	INTRON Eip63F-1
3R	7255676	3R_7255676_SNP [dm3] 3R_11429954_SNP [dm6]	T	A	1.710e^-5	0.808	UTR_3_PRIME CG5270 UPSTREAM CG18643 DOWNSTREAM RpL24-like
2L	14180146	2L_14180146_SNP [dm3] 2L_14180146_SNP [dm6]	T	A	1.740e^-5	0.808	INTRON CG43333
3R	26460819	3R_26460819_SNP [dm3] 3R_30635097_SNP [dm6]	G	T	1.803e^-5	0.808	INTERGENIC
3L	20717846	3L_20717846_SNP [dm3] 3L_20724746_SNP [dm6]	A	C	1.839e^-5	0.808	INTERGENIC
2L	4415376	2L_4415376_SNP [dm3] 2L_4415376_SNP [dm6]	G	A	2.001e^-5	0.808	INTRON CG15431
3R	26692292	3R_26692292_SNP [dm3] 3R_30866570_SNP [dm6]	A	T	2.006e^-5	0.808	UPSTREAM Cpr100A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3663860	3L_3663860_SNP [dm3] 3L_3663860_SNP [dm6]	C	T	2.131e^-5	0.808	INTERGENIC
3R	14137026	3R_14137026_SNP [dm3] 3R_18311304_SNP [dm6]	A	T	2.199e^-5	0.808	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	9235700	X_9235700_SNP [dm3] X_9341667_SNP [dm6]	C	T	2.271e^-5	0.808	INTRON CG34449
3R	18189024	3R_18189024_SNP [dm3] 3R_22363302_SNP [dm6]	G	A	2.277e^-5	0.808	UPSTREAM PSR INTRON CG7071 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	2.285e^-5	0.808	INTRON jigr1
3R	22251521	3R_22251521_SNP [dm3] 3R_26425799_SNP [dm6]	G	T	2.289e^-5	0.808	UPSTREAM CG6503 & 1 other INTRON CR31084
3R	23293097	3R_23293097_SNP [dm3] 3R_27467375_SNP [dm6]	G	C	2.362e^-5	0.808	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11037971	2L_11037971_SNP [dm3] 2L_11037971_SNP [dm6]	A	G	2.544e^-5	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	10886120	3L_10886120_SNP [dm3] 3L_10893020_SNP [dm6]	C	A	2.673e^-5	0.808	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	6587905	2L_6587905_SNP [dm3] 2L_6587905_SNP [dm6]	G	A	2.751e^-5	0.808	INTRON CG11319
3R	26107197	3R_26107197_SNP [dm3] 3R_30281475_SNP [dm6]	C	G	2.770e^-5	0.808	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	6457131	3L_6457131_SNP [dm3] 3L_6464031_SNP [dm6]	T	G	2.850e^-5	0.808	INTRON CG42747
3R	23293040	3R_23293040_SNP [dm3] 3R_27467318_SNP [dm6]	T	C	2.881e^-5	0.808	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4415311	2L_4415311_SNP [dm3] 2L_4415311_SNP [dm6]	C	G	2.974e^-5	0.808	INTRON CG15431
3R	14137019	3R_14137019_SNP [dm3] 3R_18311297_SNP [dm6]	T	A	2.975e^-5	0.808	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1252026	2L_1252026_SNP [dm3] 2L_1252026_SNP [dm6]	G	C	3.038e^-5	0.808	INTERGENIC
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	3.054e^-5	0.808	INTRON jigr1
2L	1009256	2L_1009256_SNP [dm3] 2L_1009256_SNP [dm6]	A	G	3.060e^-5	0.808	UTR_3_PRIME IA-2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	10001272	2R_10001272_SNP [dm3] 2R_14113767_SNP [dm6]	C	G	3.135e^-5	0.808	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3200674	2L_3200674_SNP [dm3] 2L_3200674_SNP [dm6]	T	C	3.142e^-5	0.808	UPSTREAM CG34393 INTERGENIC
3L	16358228	3L_16358228_SNP [dm3] 3L_16365128_SNP [dm6]	G	A	3.143e^-5	0.808	SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
3R	25858646	3R_25858646_SNP [dm3] 3R_30032924_SNP [dm6]	G	T	3.252e^-5	0.808	SPLICE_SITE_REGION Axn INTRON Axn	TF binding site mE1_TFBS_cad
3R	17970268	3R_17970268_SNP [dm3] 3R_22144546_SNP [dm6]	A	T	3.327e^-5	0.808	INTRON SKIP
2R	10001289	2R_10001289_SNP [dm3] 2R_14113784_SNP [dm6]	A	G	3.380e^-5	0.808	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	10653291	3L_10653291_SNP [dm3] 3L_10660191_SNP [dm6]	A	T	3.384e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26456354	3R_26456354_SNP [dm3] 3R_30630632_SNP [dm6]	C	T	3.396e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_cad
X	17556599	X_17556599_SNP [dm3] X_17662566_SNP [dm6]	A	G	3.428e^-5	0.808	SYNONYMOUS_CODING beta-Spec	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	3.464e^-5	0.808	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14565499	2R_14565499_SNP [dm3] 2R_18677994_SNP [dm6]	G	T	3.529e^-5	0.808	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	16006819	3R_16006819_SNP [dm3] 3R_20181097_SNP [dm6]	C	T	3.626e^-5	0.808	INTERGENIC
3R	5887151	3R_5887151_SNP [dm3] 3R_10061429_SNP [dm6]	A	G	3.629e^-5	0.808	UPSTREAM CR33629 DOWNSTREAM Npc2c EXON CR45205
3R	26458588	3R_26458588_SNP [dm3] 3R_30632866_SNP [dm6]	T	A	3.815e^-5	0.808	INTERGENIC
2L	11037877	2L_11037877_SNP [dm3] 2L_11037877_SNP [dm6]	A	T	3.950e^-5	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6588568	2L_6588568_SNP [dm3] 2L_6588568_SNP [dm6]	T	G	4.006e^-5	0.808	INTRON CG11319
3R	17872318	3R_17872318_SNP [dm3] 3R_22046596_SNP [dm6]	G	A	4.076e^-5	0.808	INTRON how	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10653214	3L_10653214_DEL [dm3] 3L_10660114_DEL [dm6]	ATTTTCATTTG...	A	4.155e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11037896	2L_11037896_SNP [dm3] 2L_11037896_SNP [dm6]	A	G	4.198e^-5	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15054382	2R_15054382_SNP [dm3] 2R_19166877_SNP [dm6]	G	A	4.223e^-5	0.808	INTRON CG10737	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	4.255e^-5	0.808	DOWNSTREAM CG4525 INTERGENIC
2L	5457360	2L_5457360_SNP [dm3] 2L_5457360_SNP [dm6]	C	T	4.409e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	3778388	2L_3778388_SNP [dm3] 2L_3778388_SNP [dm6]	A	T	4.530e^-5	0.808	UPSTREAM bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1252000	3L_1252000_SNP [dm3] 3L_1252000_SNP [dm6]	G	A	4.538e^-5	0.808	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
2R	6639804	2R_6639804_SNP [dm3] 2R_10752299_SNP [dm6]	T	C	4.555e^-5	0.808	INTRON CG33144
3L	15918281	3L_15918281_SNP [dm3] 3L_15925181_SNP [dm6]	A	C	4.558e^-5	0.808	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26353068	3R_26353068_SNP [dm3] 3R_30527346_SNP [dm6]	T	A	4.623e^-5	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26354577	3R_26354577_INS [dm3] 3R_30528855_INS [dm6]	AA	CCATATGTT	4.667e^-5	0.808	DOWNSTREAM CR45552 INTRON CR45552
2L	5457327	2L_5457327_SNP [dm3] 2L_5457327_SNP [dm6]	G	A	4.766e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	4.774e^-5	0.808	INTERGENIC
3R	21460150	3R_21460150_SNP [dm3] 3R_25634428_SNP [dm6]	G	A	4.812e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19233320	2L_19233320_SNP [dm3] 2L_19233320_SNP [dm6]	T	A	4.840e^-5	0.808	INTERGENIC
2L	14181953	2L_14181953_SNP [dm3] 2L_14181953_SNP [dm6]	T	C	4.868e^-5	0.808	INTERGENIC
3L	3518734	3L_3518734_DEL [dm3] 3L_3518734_DEL [dm6]	TATGT	T	4.980e^-5	0.808	INTRON Eip63E
2L	5457366	2L_5457366_MNP [dm3] 2L_5457366_MNP [dm6]	ACAATT	TGTTAC	5.002e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	8718581	2L_8718581_SNP [dm3] 2L_8718581_SNP [dm6]	G	T	5.045e^-5	0.808	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19177650	3R_19177650_SNP [dm3] 3R_23351928_SNP [dm6]	C	T	5.061e^-5	0.808	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
3L	3848469	3L_3848469_SNP [dm3] 3L_3848469_SNP [dm6]	T	C	5.073e^-5	0.808	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	4029375	3L_4029375_SNP [dm3] 3L_4029375_SNP [dm6]	C	T	5.166e^-5	0.808	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
3L	12858912	3L_12858912_SNP [dm3] 3L_12865812_SNP [dm6]	G	A	5.303e^-5	0.808	INTERGENIC
3R	25291514	3R_25291514_SNP [dm3] 3R_29465792_SNP [dm6]	A	G	5.325e^-5	0.808	INTRON Ptp99A
3R	22776786	3R_22776786_SNP [dm3] 3R_26951064_SNP [dm6]	C	T	5.347e^-5	0.808	SPLICE_SITE_REGION CG6330 INTRON CG6330	TF binding site mE1_TFBS_cad
3R	3976298	3R_3976298_SNP [dm3] 3R_8150576_SNP [dm6]	A	G	5.390e^-5	0.808	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	6589467	2L_6589467_SNP [dm3] 2L_6589467_SNP [dm6]	C	G	5.391e^-5	0.808	INTRON CG11319
3L	10653161	3L_10653161_SNP [dm3] 3L_10660061_SNP [dm6]	C	A	5.414e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18769140	2L_18769140_SNP [dm3] 2L_18769140_SNP [dm6]	C	G	5.448e^-5	0.808	SYNONYMOUS_CODING ham START_GAINED ham UTR_5_PRIME ham
3L	6363983	3L_6363983_SNP [dm3] 3L_6370883_SNP [dm6]	C	T	5.482e^-5	0.808	UPSTREAM CR45419 INTERGENIC
3L	10653293	3L_10653293_SNP [dm3] 3L_10660193_SNP [dm6]	T	A	5.507e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11609394	2L_11609394_SNP [dm3] 2L_11609394_SNP [dm6]	G	A	5.522e^-5	0.808	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14502356	2L_14502356_SNP [dm3] 2L_14502356_SNP [dm6]	C	T	5.623e^-5	0.808	INTERGENIC
3R	22772093	3R_22772093_SNP [dm3] 3R_26946371_SNP [dm6]	G	A	5.648e^-5	0.808	SYNONYMOUS_CODING CG14252 DOWNSTREAM tRNA:CR31071	TF binding site mE1_TFBS_sens
3R	18188518	3R_18188518_SNP [dm3] 3R_22362796_SNP [dm6]	C	T	5.657e^-5	0.808	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15897709	3R_15897709_SNP [dm3] 3R_20071987_SNP [dm6]	C	A	5.680e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14182026	2L_14182026_SNP [dm3] 2L_14182026_SNP [dm6]	G	A	5.699e^-5	0.808	INTERGENIC
2L	5457344	2L_5457344_SNP [dm3] 2L_5457344_SNP [dm6]	G	T	5.702e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	2403097	3L_2403097_SNP [dm3] 3L_2403097_SNP [dm6]	G	C	5.721e^-5	0.808	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8717663	2L_8717663_SNP [dm3] 2L_8717663_SNP [dm6]	A	G	5.727e^-5	0.808	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25033160	3R_25033160_SNP [dm3] 3R_29207438_SNP [dm6]	T	A	5.751e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	10653279	3L_10653279_SNP [dm3] 3L_10660179_SNP [dm6]	C	T	5.754e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10886085	3L_10886085_SNP [dm3] 3L_10892985_SNP [dm6]	T	G	5.866e^-5	0.808	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	7185008	3L_7185008_SNP [dm3] 3L_7191908_SNP [dm6]	C	G	5.990e^-5	0.808	INTERGENIC
2L	21903778	2L_21903778_SNP [dm3] 2L_21903778_SNP [dm6]	G	T	6.011e^-5	0.808	DOWNSTREAM CG1421 INTERGENIC
2R	6146216	2R_6146216_SNP [dm3] 2R_10258711_SNP [dm6]	G	A	6.016e^-5	0.808	INTRON CG12911	TF binding site mE1_TFBS_cad
3R	21465893	3R_21465893_SNP [dm3] 3R_25640171_SNP [dm6]	T	C	6.024e^-5	0.808	INTRON jigr1
2L	5457347	2L_5457347_SNP [dm3] 2L_5457347_SNP [dm6]	A	G	6.044e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3L	895738	3L_895738_SNP [dm3] 3L_895738_SNP [dm6]	G	C	6.052e^-5	0.808	UPSTREAM CG34056 DOWNSTREAM CG32479 INTERGENIC
3L	12958490	3L_12958490_SNP [dm3] 3L_12965390_SNP [dm6]	A	T	6.095e^-5	0.808	NON_SYNONYMOUS_CODING Or69a INTRON Or69a	TF binding site mE1_TFBS_HSA
2L	8716279	2L_8716279_SNP [dm3] 2L_8716279_SNP [dm6]	G	C	6.150e^-5	0.808	INTRON raw
2L	14176822	2L_14176822_SNP [dm3] 2L_14176822_SNP [dm6]	C	T	6.150e^-5	0.808	INTRON CG43333
3R	5859760	3R_5859760_SNP [dm3] 3R_10034038_SNP [dm6]	G	A	6.154e^-5	0.808	INTRON Mical
3R	19203807	3R_19203807_SNP [dm3] 3R_23378085_SNP [dm6]	T	C	6.169e^-5	0.808	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_inv
3R	18188486	3R_18188486_SNP [dm3] 3R_22362764_SNP [dm6]	C	T	6.205e^-5	0.808	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13737551	3R_13737551_SNP [dm3] 3R_17911829_SNP [dm6]	G	A	6.304e^-5	0.808	NON_SYNONYMOUS_CODING CG43445 INTRON Rim
3L	10653268	3L_10653268_SNP [dm3] 3L_10660168_SNP [dm6]	T	A	6.359e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18703409	3L_18703409_SNP [dm3] 3L_18710309_SNP [dm6]	C	T	6.381e^-5	0.808	INTERGENIC
3L	9619636	3L_9619636_SNP [dm3] 3L_9626536_SNP [dm6]	C	A	6.421e^-5	0.808	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
3R	17992976	3R_17992976_DEL [dm3] 3R_22167254_DEL [dm6]	TTA	T	6.449e^-5	0.808	INTRON SKIP	TF binding site mE1_TFBS_Kr
2L	4415280	2L_4415280_SNP [dm3] 2L_4415280_SNP [dm6]	C	T	6.465e^-5	0.808	INTRON CG15431
3L	10653170	3L_10653170_DEL [dm3] 3L_10660070_DEL [dm6]	AGATTAAATTTAA...	A	6.470e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17698275	3L_17698275_SNP [dm3] 3L_17705175_SNP [dm6]	T	G	6.602e^-5	0.808	INTRON Ccn
X	19463991	X_19463991_SNP [dm3] X_19569958_SNP [dm6]	T	A	6.634e^-5	0.808	UTR_3_PRIME Tao DOWNSTREAM car & 1 other
3R	16006812	3R_16006812_SNP [dm3] 3R_20181090_SNP [dm6]	T	C	6.671e^-5	0.808	INTERGENIC
3L	22149345	3L_22149345_SNP [dm3] 3L_22156245_SNP [dm6]	A	G	6.709e^-5	0.808	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18573164	3L_18573164_SNP [dm3] 3L_18580064_SNP [dm6]	C	T	6.725e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	18531676	2L_18531676_SNP [dm3] 2L_18531676_SNP [dm6]	C	T	6.810e^-5	0.808	UTR_3_PRIME CG10211 DOWNSTREAM Pde11
2L	14182002	2L_14182002_SNP [dm3] 2L_14182002_SNP [dm6]	T	C	6.826e^-5	0.808	INTERGENIC
3L	3754590	3L_3754590_SNP [dm3] 3L_3754590_SNP [dm6]	T	C	6.838e^-5	0.808	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
X	6166345	X_6166345_SNP [dm3] X_6272312_SNP [dm6]	A	C	6.916e^-5	0.808	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	10886032	3L_10886032_SNP [dm3] 3L_10892932_SNP [dm6]	T	A	6.941e^-5	0.808	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	8718984	2L_8718984_SNP [dm3] 2L_8718984_SNP [dm6]	T	C	6.950e^-5	0.808	INTRON raw	TF binding site mE1_TFBS_Trl
2L	8174002	2L_8174002_SNP [dm3] 2L_8174002_SNP [dm6]	A	C	6.973e^-5	0.808	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9742286	3L_9742286_SNP [dm3] 3L_9749186_SNP [dm6]	A	G	7.035e^-5	0.808	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	15918327	3L_15918327_SNP [dm3] 3L_15925227_SNP [dm6]	A	G	7.044e^-5	0.808	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8813199	X_8813199_INS [dm3] X_8919166_INS [dm6]	G	GAG	7.052e^-5	0.808	DOWNSTREAM CR44111 INTRON rdgA
3R	22071058	3R_22071058_SNP [dm3] 3R_26245336_SNP [dm6]	A	G	7.111e^-5	0.808	INTRON CR42745
2L	5457328	2L_5457328_SNP [dm3] 2L_5457328_SNP [dm6]	G	A	7.139e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	20944790	3R_20944790_SNP [dm3] 3R_25119068_SNP [dm6]	A	G	7.182e^-5	0.808	SYNONYMOUS_CODING CG31510 INTRON CG31108	TF binding site mE1_TFBS_sens
2L	12123607	2L_12123607_SNP [dm3] 2L_12123607_SNP [dm6]	G	A	7.218e^-5	0.808	INTRON CG17211
3R	14708155	3R_14708155_SNP [dm3] 3R_18882433_SNP [dm6]	A	G	7.236e^-5	0.808	INTERGENIC
2R	5710546	2R_5710546_SNP [dm3] 2R_9823041_SNP [dm6]	A	T	7.238e^-5	0.808	UPSTREAM CG30001 DOWNSTREAM dila INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
3L	2403232	3L_2403232_SNP [dm3] 3L_2403232_SNP [dm6]	C	T	7.263e^-5	0.808	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22149820	X_22149820_INS [dm3] X_22747984_INS [dm6]	C	CGCC	7.316e^-5	0.808	INTRON CR44997
2L	8423990	2L_8423990_SNP [dm3] 2L_8423990_SNP [dm6]	T	C	7.366e^-5	0.808	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	23643639	3R_23643639_SNP [dm3] 3R_27817917_SNP [dm6]	A	T	7.388e^-5	0.808	INTRON CG34353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5062425	3L_5062425_SNP [dm3] 3L_5062425_SNP [dm6]	C	T	7.411e^-5	0.808	INTRON Con
3R	23499928	3R_23499928_SNP [dm3] 3R_27674206_SNP [dm6]	C	A	7.464e^-5	0.808	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
2L	7393609	2L_7393609_SNP [dm3] 2L_7393609_SNP [dm6]	G	A	7.628e^-5	0.808	INTRON CG5160
3L	1513949	3L_1513949_SNP [dm3] 3L_1513949_SNP [dm6]	T	C	7.649e^-5	0.808	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
3L	8897175	3L_8897175_SNP [dm3] 3L_8904075_SNP [dm6]	A	T	7.653e^-5	0.808	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
2L	19845494	2L_19845494_SNP [dm3] 2L_19845494_SNP [dm6]	T	A	7.670e^-5	0.808	START_GAINED sick UTR_5_PRIME sick INTRON sick
3L	14394268	3L_14394268_SNP [dm3] 3L_14401168_SNP [dm6]	A	C	7.730e^-5	0.808	INTRON CG3868
3R	18771993	3R_18771993_SNP [dm3] 3R_22946271_SNP [dm6]	G	C	7.738e^-5	0.808	INTRON klg
3L	10816197	3L_10816197_SNP [dm3] 3L_10823097_SNP [dm6]	T	G	7.778e^-5	0.808	INTERGENIC
3R	27451779	3R_27451779_SNP [dm3] 3R_31626057_SNP [dm6]	T	A	7.786e^-5	0.808	INTRON kek6
3L	5475077	3L_5475077_SNP [dm3] 3L_5481977_SNP [dm6]	T	C	7.791e^-5	0.808	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20108496	2R_20108496_SNP [dm3] 2R_24220973_SNP [dm6]	G	A	7.863e^-5	0.808	INTRON CG30419
2L	13867677	2L_13867677_SNP [dm3] 2L_13867677_SNP [dm6]	G	T	7.913e^-5	0.808	UPSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19845496	2L_19845496_SNP [dm3] 2L_19845496_SNP [dm6]	G	T	7.929e^-5	0.808	UTR_5_PRIME sick INTRON sick
3L	3754267	3L_3754267_SNP [dm3] 3L_3754267_SNP [dm6]	C	T	7.951e^-5	0.808	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
3L	8037259	3L_8037259_SNP [dm3] 3L_8044159_SNP [dm6]	A	G	7.990e^-5	0.808	INTRON nmo
2L	4414722	2L_4414722_SNP [dm3] 2L_4414722_SNP [dm6]	A	T	7.995e^-5	0.808	INTRON CG15431
3L	13624818	3L_13624818_SNP [dm3] 3L_13631718_SNP [dm6]	G	A	7.998e^-5	0.808	INTRON bru-3
3R	22772958	3R_22772958_SNP [dm3] 3R_26947236_SNP [dm6]	C	T	8.007e^-5	0.808	UTR_3_PRIME CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other
2L	7393545	2L_7393545_SNP [dm3] 2L_7393545_SNP [dm6]	C	T	8.023e^-5	0.808	INTRON CG5160
3R	22071170	3R_22071170_SNP [dm3] 3R_26245448_SNP [dm6]	T	A	8.036e^-5	0.808	INTRON CR42745
3L	6456827	3L_6456827_SNP [dm3] 3L_6463727_SNP [dm6]	C	A	8.041e^-5	0.808	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2R	8281792	2R_8281792_SNP [dm3] 2R_12394287_SNP [dm6]	A	T	8.118e^-5	0.808	UPSTREAM CG30048 INTRON Or49a
2L	14181954	2L_14181954_SNP [dm3] 2L_14181954_SNP [dm6]	T	C	8.191e^-5	0.808	INTERGENIC
3R	9697352	3R_9697352_SNP [dm3] 3R_13871630_SNP [dm6]	T	C	8.201e^-5	0.808	INTRON E5
2L	19268375	2L_19268375_SNP [dm3] 2L_19268375_SNP [dm6]	G	A	8.202e^-5	0.808	DOWNSTREAM CR44190 INTERGENIC
2R	16270380	2R_16270380_SNP [dm3] 2R_20382875_SNP [dm6]	T	A	8.240e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1828557	3L_1828557_SNP [dm3] 3L_1828557_SNP [dm6]	A	G	8.339e^-5	0.808	INTRON Cpr62Ba
3R	22878347	3R_22878347_SNP [dm3] 3R_27052625_SNP [dm6]	A	C	8.396e^-5	0.808	INTRON RYa-R
X	19463990	X_19463990_SNP [dm3] X_19569957_SNP [dm6]	G	A	8.425e^-5	0.808	UTR_3_PRIME Tao DOWNSTREAM car & 1 other
3R	25033176	3R_25033176_SNP [dm3] 3R_29207454_SNP [dm6]	G	T	8.484e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	17564161	2R_17564161_SNP [dm3] 2R_21676656_SNP [dm6]	C	G	8.490e^-5	0.808	NON_SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19009893	2R_19009893_SNP [dm3] 2R_23122370_SNP [dm6]	G	A	8.513e^-5	0.808	INTERGENIC
2R	8281794	2R_8281794_SNP [dm3] 2R_12394289_SNP [dm6]	T	A	8.568e^-5	0.808	UPSTREAM CG30048 INTRON Or49a
3R	18771992	3R_18771992_SNP [dm3] 3R_22946270_SNP [dm6]	A	C	8.576e^-5	0.808	INTRON klg
X	18175635	X_18175635_DEL [dm3] X_18281602_DEL [dm6]	GAGATCGCAGGTGCGGCGAA...	G	8.618e^-5	0.808	INTRON upd3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	16086559	2L_16086559_SNP [dm3] 2L_16086559_SNP [dm6]	G	T	8.674e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20798882	3R_20798882_SNP [dm3] 3R_24973160_SNP [dm6]	G	A	8.776e^-5	0.808	INTERGENIC
3R	23362711	3R_23362711_SNP [dm3] 3R_27536989_SNP [dm6]	G	A	8.875e^-5	0.808	EXON CR44289
2L	6587888	2L_6587888_SNP [dm3] 2L_6587888_SNP [dm6]	A	G	8.896e^-5	0.808	INTRON CG11319
2L	9397279	2L_9397279_SNP [dm3] 2L_9397279_SNP [dm6]	G	A	8.919e^-5	0.808	SYNONYMOUS_CODING CG4438 INTRON Shawl
3L	18743595	3L_18743595_INS [dm3] 3L_18750495_INS [dm6]	T	TCGT	8.999e^-5	0.808	DOWNSTREAM ftz-f1 & 1 other INTERGENIC
2L	17706819	2L_17706819_SNP [dm3] 2L_17706819_SNP [dm6]	C	A	9.006e^-5	0.808	DOWNSTREAM CG43231 INTRON CadN
3L	18558436	3L_18558436_SNP [dm3] 3L_18565336_SNP [dm6]	G	A	9.048e^-5	0.808	INTRON AstC-R1
3L	10684371	3L_10684371_SNP [dm3] 3L_10691271_SNP [dm6]	C	T	9.138e^-5	0.808	SYNONYMOUS_CODING CG11811 DOWNSTREAM simj	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	15918506	3L_15918506_SNP [dm3] 3L_15925406_SNP [dm6]	G	T	9.144e^-5	0.808	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4029406	3L_4029406_SNP [dm3] 3L_4029406_SNP [dm6]	G	A	9.150e^-5	0.808	UPSTREAM Gr64c DOWNSTREAM Gr64a INTRON Gr64b & 1 other
3R	25033177	3R_25033177_INS [dm3] 3R_29207455_INS [dm6]	A	AATAAT	9.164e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	8991643	2R_8991643_SNP [dm3] 2R_13104138_SNP [dm6]	A	C	9.231e^-5	0.808	UTR_5_PRIME CG44341
3R	16715493	3R_16715493_DEL [dm3] 3R_20889771_DEL [dm6]	TT	T	9.273e^-5	0.808	UPSTREAM tRNA:CR31480 INTERGENIC
3L	13790841	3L_13790841_SNP [dm3] 3L_13797741_SNP [dm6]	G	T	9.281e^-5	0.808	INTRON bru-3
3L	10679409	3L_10679409_SNP [dm3] 3L_10686309_SNP [dm6]	T	G	9.349e^-5	0.808	INTRON simj	TF binding site mE1_TFBS_chinmo
2L	6392292	2L_6392292_SNP [dm3] 2L_6392292_SNP [dm6]	T	A	9.359e^-5	0.808	INTRON CG42368
3R	19388517	3R_19388517_SNP [dm3] 3R_23562795_SNP [dm6]	G	A	9.448e^-5	0.808	INTRON beat-IV	TF binding site mE1_TFBS_HSA
3L	15918388	3L_15918388_SNP [dm3] 3L_15925288_SNP [dm6]	C	T	9.593e^-5	0.808	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10201244	3L_10201244_SNP [dm3] 3L_10208144_SNP [dm6]	G	A	9.674e^-5	0.808	INTERGENIC
3L	10678225	3L_10678225_SNP [dm3] 3L_10685125_SNP [dm6]	C	G	9.751e^-5	0.808	NON_SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15918257	3L_15918257_INS [dm3] 3L_15925157_INS [dm6]	A	AATTTGTATCGAG...	9.767e^-5	0.808	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3776701	2L_3776701_SNP [dm3] 2L_3776701_SNP [dm6]	G	T	9.797e^-5	0.808	INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18188513	3R_18188513_SNP [dm3] 3R_22362791_SNP [dm6]	G	T	9.798e^-5	0.808	START_GAINED Muted & 1 other UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22814295	3L_22814295_SNP [dm3] 3L_22821195_SNP [dm6]	A	G	9.848e^-5	0.808	INTRON jim
X	18176010	X_18176010_SNP [dm3] X_18281977_SNP [dm6]	C	T	9.896e^-5	0.808	INTRON upd3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16089238	3L_16089238_SNP [dm3] 3L_16096138_SNP [dm6]	C	A	1.012e^-4	0.808	NON_SYNONYMOUS_CODING CG13074 UTR_3_PRIME ClC-c DOWNSTREAM ClC-c	TF binding site mE1_TFBS_cad
2R	9277841	2R_9277841_SNP [dm3] 2R_13390336_SNP [dm6]	A	G	1.020e^-4	0.808	SYNONYMOUS_CODING CG43691
2L	14513420	2L_14513420_SNP [dm3] 2L_14513420_SNP [dm6]	G	A	1.021e^-4	0.808	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	16056469	X_16056469_SNP [dm3] X_16162436_SNP [dm6]	A	G	1.021e^-4	0.808	INTERGENIC
3R	26177514	3R_26177514_SNP [dm3] 3R_30351792_SNP [dm6]	G	A	1.021e^-4	0.808	INTRON hdc
2L	11037880	2L_11037880_SNP [dm3] 2L_11037880_SNP [dm6]	G	C	1.026e^-4	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037883	2L_11037883_SNP [dm3] 2L_11037883_SNP [dm6]	A	G	1.026e^-4	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8718521	2L_8718521_SNP [dm3] 2L_8718521_SNP [dm6]	G	A	1.026e^-4	0.808	INTRON raw	TF binding site mE1_TFBS_Trl
3R	15393934	3R_15393934_SNP [dm3] 3R_19568212_SNP [dm6]	A	G	1.036e^-4	0.808	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
3R	16965515	3R_16965515_SNP [dm3] 3R_21139793_SNP [dm6]	T	C	1.047e^-4	0.808	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7938522	3R_7938522_SNP [dm3] 3R_12112800_SNP [dm6]	C	A	1.052e^-4	0.808	INTERGENIC
2L	8756632	2L_8756632_SNP [dm3] 2L_8756632_SNP [dm6]	A	T	1.066e^-4	0.808	INTERGENIC
3L	8887194	3L_8887194_SNP [dm3] 3L_8894094_SNP [dm6]	G	A	1.067e^-4	0.808	SYNONYMOUS_CODING Mcm7 DOWNSTREAM TrpA1
3R	11603420	3R_11603420_SNP [dm3] 3R_15777698_SNP [dm6]	A	T	1.077e^-4	0.808	DOWNSTREAM CG4525 INTERGENIC
2L	4415157	2L_4415157_SNP [dm3] 2L_4415157_SNP [dm6]	C	A	1.081e^-4	0.808	INTRON CG15431
3R	8246665	3R_8246665_SNP [dm3] 3R_12420943_SNP [dm6]	G	T	1.084e^-4	0.808	UTR_3_PRIME pps DOWNSTREAM Scgbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22987378	3R_22987378_SNP [dm3] 3R_27161656_SNP [dm6]	C	A	1.087e^-4	0.808	INTRON CG5909
3L	21696834	3L_21696834_SNP [dm3] 3L_21703734_SNP [dm6]	C	A	1.094e^-4	0.808	INTRON CG32447	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10653284	3L_10653284_SNP [dm3] 3L_10660184_SNP [dm6]	A	G	1.097e^-4	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16689175	3R_16689175_SNP [dm3] 3R_20863453_SNP [dm6]	C	T	1.098e^-4	0.808	INTRON CG3822	TF binding site mE1_TFBS_chinmo
X	9299377	X_9299377_SNP [dm3] X_9405344_SNP [dm6]	G	T	1.098e^-4	0.808	INTRON mgl
2L	14180115	2L_14180115_DEL [dm3] 2L_14180115_DEL [dm6]	AGCGATATACGATACAACAA...	A	1.100e^-4	0.808	INTRON CG43333
3R	18076272	3R_18076272_SNP [dm3] 3R_22250550_SNP [dm6]	A	C	1.103e^-4	0.808	INTRON SKIP
2L	11609391	2L_11609391_SNP [dm3] 2L_11609391_SNP [dm6]	T	C	1.105e^-4	0.808	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12667991	2L_12667991_SNP [dm3] 2L_12667991_SNP [dm6]	G	C	1.109e^-4	0.808	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17780009	2R_17780009_SNP [dm3] 2R_21892504_SNP [dm6]	A	G	1.112e^-4	0.808	INTRON Fili
2L	8718985	2L_8718985_SNP [dm3] 2L_8718985_SNP [dm6]	T	G	1.124e^-4	0.808	INTRON raw	TF binding site mE1_TFBS_Trl
2L	7393624	2L_7393624_SNP [dm3] 2L_7393624_SNP [dm6]	C	G	1.130e^-4	0.808	INTRON CG5160
2L	14772203	2L_14772203_SNP [dm3] 2L_14772203_SNP [dm6]	A	G	1.130e^-4	0.808	INTERGENIC
3R	22779413	3R_22779413_SNP [dm3] 3R_26953691_SNP [dm6]	A	C	1.132e^-4	0.808	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12892782	3L_12892782_SNP [dm3] 3L_12899682_SNP [dm6]	T	A	1.133e^-4	0.808	INTERGENIC
2L	5457348	2L_5457348_SNP [dm3] 2L_5457348_SNP [dm6]	A	G	1.136e^-4	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	6587912	2L_6587912_SNP [dm3] 2L_6587912_SNP [dm6]	G	T	1.141e^-4	0.808	INTRON CG11319
3R	26354640	3R_26354640_DEL [dm3] 3R_30528918_DEL [dm6]	GG	G	1.142e^-4	0.808	DOWNSTREAM CR45552 INTRON CR45552
3L	15918503	3L_15918503_SNP [dm3] 3L_15925403_SNP [dm6]	A	G	1.146e^-4	0.808	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18165023	3R_18165023_SNP [dm3] 3R_22339301_SNP [dm6]	G	A	1.151e^-4	0.808	INTRON CG5388
3L	11312619	3L_11312619_SNP [dm3] 3L_11319519_SNP [dm6]	A	G	1.151e^-4	0.808	DOWNSTREAM CG6168 INTERGENIC	TF binding site mE1_TFBS_Kr
X	20847188	X_20847188_SNP [dm3] X_20976161_SNP [dm6]	A	C	1.160e^-4	0.808	INTERGENIC
2L	13073107	2L_13073107_SNP [dm3] 2L_13073107_SNP [dm6]	A	C	1.165e^-4	0.808	INTERGENIC
2R	8299380	2R_8299380_SNP [dm3] 2R_12411875_SNP [dm6]	A	T	1.166e^-4	0.808	DOWNSTREAM CG33627 INTERGENIC
3L	22888607	3L_22888607_SNP [dm3] 3L_22895507_SNP [dm6]	C	T	1.170e^-4	0.808	UPSTREAM CR44688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10886107	3L_10886107_SNP [dm3] 3L_10893007_SNP [dm6]	A	G	1.176e^-4	0.808	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2R	8275759	2R_8275759_SNP [dm3] 2R_12388254_SNP [dm6]	T	C	1.187e^-4	0.808	INTRON Cpr49Ac
2L	8405154	2L_8405154_SNP [dm3] 2L_8405154_SNP [dm6]	T	G	1.188e^-4	0.808	SYNONYMOUS_CODING emb	TF binding site mE1_TFBS_sens
2L	4740662	2L_4740662_SNP [dm3] 2L_4740662_SNP [dm6]	G	A	1.190e^-4	0.808	INTRON CG15630
3R	19203952	3R_19203952_SNP [dm3] 3R_23378230_SNP [dm6]	C	T	1.193e^-4	0.808	INTRON CG4393	TF binding site mE1_TFBS_inv
2R	18136910	2R_18136910_SNP [dm3] 2R_22249405_SNP [dm6]	C	G	1.195e^-4	0.808	INTRON dve	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2L	11608313	2L_11608313_SNP [dm3] 2L_11608313_SNP [dm6]	C	T	1.213e^-4	0.808	INTRON kek2
2L	17700883	2L_17700883_SNP [dm3] 2L_17700883_SNP [dm6]	G	A	1.216e^-4	0.808	INTRON CadN
2R	18363305	2R_18363305_SNP [dm3] 2R_22475800_SNP [dm6]	T	C	1.217e^-4	0.808	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
3L	18887495	3L_18887495_SNP [dm3] 3L_18894395_SNP [dm6]	C	G	1.219e^-4	0.808	SYNONYMOUS_CODING CG3902	TF binding site mE1_TFBS_cad
3R	12243844	3R_12243844_SNP [dm3] 3R_16418122_SNP [dm6]	A	G	1.222e^-4	0.808	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	13377619	3L_13377619_SNP [dm3] 3L_13384519_SNP [dm6]	A	C	1.225e^-4	0.808	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	20005170	3R_20005170_SNP [dm3] 3R_24179448_SNP [dm6]	C	G	1.232e^-4	0.808	INTRON CG13606
3R	16965539	3R_16965539_SNP [dm3] 3R_21139817_SNP [dm6]	T	G	1.234e^-4	0.808	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1259656	3L_1259656_SNP [dm3] 3L_1259656_SNP [dm6]	G	A	1.234e^-4	0.808	INTRON CG9134
2L	9349936	2L_9349936_SNP [dm3] 2L_9349936_SNP [dm6]	C	T	1.235e^-4	0.808	UTR_3_PRIME CG43350 UPSTREAM CR44802 & 1 other DOWNSTREAM CG43350
3L	4029344	3L_4029344_SNP [dm3] 3L_4029344_SNP [dm6]	A	C	1.238e^-4	0.808	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
3L	1372910	3L_1372910_SNP [dm3] 3L_1372910_SNP [dm6]	G	C	1.240e^-4	0.808	INTRON Ptp61F & 1 other
2L	12759706	2L_12759706_SNP [dm3] 2L_12759706_SNP [dm6]	C	G	1.241e^-4	0.808	DOWNSTREAM CG15483 INTERGENIC
3L	1531752	3L_1531752_INS [dm3] 3L_1531752_INS [dm6]	G	TTGGTTTGGC	1.254e^-4	0.808	UPSTREAM Ir62a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19558502	3R_19558502_SNP [dm3] 3R_23732780_SNP [dm6]	A	T	1.257e^-4	0.808	UPSTREAM Hmgcr INTRON Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	13737584	3R_13737584_SNP [dm3] 3R_17911862_SNP [dm6]	T	A	1.260e^-4	0.808	NON_SYNONYMOUS_CODING CG43445 INTRON Rim
3R	8418088	3R_8418088_SNP [dm3] 3R_12592366_SNP [dm6]	G	C	1.266e^-4	0.808	INTRON Octbeta2R
2L	960816	2L_960816_SNP [dm3] 2L_960816_SNP [dm6]	C	A	1.267e^-4	0.808	INTERGENIC
3L	6389213	3L_6389213_SNP [dm3] 3L_6396113_SNP [dm6]	G	T	1.272e^-4	0.808	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23570045	3R_23570045_SNP [dm3] 3R_27744323_SNP [dm6]	G	A	1.274e^-4	0.808	SYNONYMOUS_CODING Ets98B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27451748	3R_27451748_SNP [dm3] 3R_31626026_SNP [dm6]	G	A	1.277e^-4	0.808	INTRON kek6
3R	26460458	3R_26460458_SNP [dm3] 3R_30634736_SNP [dm6]	G	T	1.283e^-4	0.808	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15002185	3R_15002185_SNP [dm3] 3R_19176463_SNP [dm6]	A	C	1.290e^-4	0.808	UPSTREAM CG14282 INTERGENIC
3R	15775389	3R_15775389_SNP [dm3] 3R_19949667_SNP [dm6]	A	G	1.292e^-4	0.808	DOWNSTREAM CG4783 INTRON Hs6st
2L	8719014	2L_8719014_SNP [dm3] 2L_8719014_SNP [dm6]	A	T	1.297e^-4	0.808	INTRON raw
3R	6316497	3R_6316497_SNP [dm3] 3R_10490775_SNP [dm6]	A	T	1.301e^-4	0.808	UPSTREAM CR45576 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26459778	3R_26459778_SNP [dm3] 3R_30634056_SNP [dm6]	C	T	1.305e^-4	0.808	INTERGENIC
2L	10486722	2L_10486722_SNP [dm3] 2L_10486722_SNP [dm6]	C	T	1.306e^-4	0.808	SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75	TF binding site mE1_TFBS_inv
3R	7261147	3R_7261147_SNP [dm3] 3R_11435425_SNP [dm6]	C	A	1.311e^-4	0.808	NON_SYNONYMOUS_CODING CG6744 UPSTREAM CG5281	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3721022	3L_3721022_SNP [dm3] 3L_3721022_SNP [dm6]	A	G	1.311e^-4	0.808	INTRON CG32264
X	5117811	X_5117811_SNP [dm3] X_5223778_SNP [dm6]	A	C	1.312e^-4	0.808	INTRON CG15465 & 1 other
3L	8731261	3L_8731261_SNP [dm3] 3L_8738161_SNP [dm6]	C	G	1.313e^-4	0.808	INTRON Prm
3R	21512423	3R_21512423_SNP [dm3] 3R_25686701_SNP [dm6]	A	G	1.317e^-4	0.808	NON_SYNONYMOUS_CODING CLS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22995658	3L_22995658_SNP [dm3] 3L_23002558_SNP [dm6]	A	G	1.321e^-4	0.808	INTRON nrm
3R	20798771	3R_20798771_SNP [dm3] 3R_24973049_SNP [dm6]	T	A	1.322e^-4	0.808	INTERGENIC
3R	21694878	3R_21694878_SNP [dm3] 3R_25869156_SNP [dm6]	A	C	1.323e^-4	0.808	INTRON CG5890	TF binding site mE1_TFBS_HSA
3L	2390083	3L_2390083_SNP [dm3] 3L_2390083_SNP [dm6]	T	G	1.327e^-4	0.808	NON_SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_sens
3R	18573137	3R_18573137_SNP [dm3] 3R_22747415_SNP [dm6]	G	A	1.333e^-4	0.808	SYNONYMOUS_CODING CG17141 DOWNSTREAM HP1c & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23501388	3R_23501388_SNP [dm3] 3R_27675666_SNP [dm6]	T	C	1.346e^-4	0.808	INTRON unc80	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4280272	2L_4280272_SNP [dm3] 2L_4280272_SNP [dm6]	T	C	1.350e^-4	0.808	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4280283	2L_4280283_SNP [dm3] 2L_4280283_SNP [dm6]	A	T	1.350e^-4	0.808	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	21641389	3L_21641389_SNP [dm3] 3L_21648289_SNP [dm6]	G	A	1.352e^-4	0.808	INTRON CG43980
3L	16062159	3L_16062159_SNP [dm3] 3L_16069059_SNP [dm6]	A	T	1.352e^-4	0.808	INTRON Mbs	TF binding site mE1_TFBS_cad
3R	11613489	3R_11613489_SNP [dm3] 3R_15787767_SNP [dm6]	T	C	1.353e^-4	0.808	UPSTREAM CG9589 INTRON CG9590	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20909939	3R_20909939_SNP [dm3] 3R_25084217_SNP [dm6]	C	T	1.364e^-4	0.811	SYNONYMOUS_CODING fd96Ca	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22761033	3R_22761033_SNP [dm3] 3R_26935311_SNP [dm6]	C	A	1.371e^-4	0.811	INTRON sda
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	1.380e^-4	0.811	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
2L	18518589	2L_18518589_SNP [dm3] 2L_18518589_SNP [dm6]	G	A	1.381e^-4	0.811	INTRON CG10211
2R	20084926	2R_20084926_SNP [dm3] 2R_24197403_SNP [dm6]	G	C	1.395e^-4	0.811	UPSTREAM CG3356 DOWNSTREAM cN-IIIB INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA transposable element FlyBase
3R	22754503	3R_22754503_SNP [dm3] 3R_26928781_SNP [dm6]	G	C	1.395e^-4	0.811	INTRON sda
3R	21465759	3R_21465759_SNP [dm3] 3R_25640037_SNP [dm6]	T	A	1.400e^-4	0.811	INTRON jigr1
2L	5447836	2L_5447836_SNP [dm3] 2L_5447836_SNP [dm6]	G	A	1.408e^-4	0.811	INTERGENIC
3R	25459914	3R_25459914_SNP [dm3] 3R_29634192_SNP [dm6]	G	A	1.408e^-4	0.811	INTRON Dop1R2
2L	11037879	2L_11037879_SNP [dm3] 2L_11037879_SNP [dm6]	C	G	1.410e^-4	0.811	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4280258	2L_4280258_SNP [dm3] 2L_4280258_SNP [dm6]	A	T	1.429e^-4	0.811	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9456772	2L_9456772_SNP [dm3] 2L_9456772_SNP [dm6]	G	A	1.439e^-4	0.811	INTRON numb	regulatory region REDfly_CRMs
2L	5446860	2L_5446860_SNP [dm3] 2L_5446860_SNP [dm6]	G	A	1.439e^-4	0.811	INTERGENIC
3R	14327286	3R_14327286_SNP [dm3] 3R_18501564_SNP [dm6]	A	G	1.445e^-4	0.811	INTRON fru	TF binding site BDTNP1_TFBS_da
3L	2390024	3L_2390024_SNP [dm3] 3L_2390024_SNP [dm6]	G	A	1.446e^-4	0.811	SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9731327	2R_9731327_SNP [dm3] 2R_13843822_SNP [dm6]	G	A	1.450e^-4	0.811	SYNONYMOUS_CODING Syngr
3L	20026990	3L_20026990_SNP [dm3] 3L_20033890_SNP [dm6]	T	G	1.454e^-4	0.811	INTERGENIC
2R	12807533	2R_12807533_DEL [dm3] 2R_16920028_DEL [dm6]	TG	T	1.456e^-4	0.811	INTERGENIC
2R	16270346	2R_16270346_SNP [dm3] 2R_20382841_SNP [dm6]	A	T	1.457e^-4	0.811	INTERGENIC
3R	15399561	3R_15399561_SNP [dm3] 3R_19573839_SNP [dm6]	G	A	1.460e^-4	0.811	INTRON Dys
2L	13867717	2L_13867717_SNP [dm3] 2L_13867717_SNP [dm6]	C	G	1.465e^-4	0.811	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	6130299	X_6130299_SNP [dm3] X_6236266_SNP [dm6]	A	G	1.471e^-4	0.811	DOWNSTREAM CG14446 INTERGENIC
3L	5472512	3L_5472512_SNP [dm3] 3L_5479412_SNP [dm6]	G	C	1.483e^-4	0.811	UPSTREAM CG4835 INTERGENIC
3L	16057935	3L_16057935_SNP [dm3] 3L_16064835_SNP [dm6]	A	T	1.485e^-4	0.811	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8281773	2R_8281773_SNP [dm3] 2R_12394268_SNP [dm6]	G	C	1.496e^-4	0.811	UPSTREAM CG30048 INTRON Or49a
3L	21920996	3L_21920996_SNP [dm3] 3L_21927896_SNP [dm6]	C	T	1.497e^-4	0.811	UTR_3_PRIME mub
3L	5685851	3L_5685851_SNP [dm3] 3L_5692751_SNP [dm6]	T	A	1.504e^-4	0.811	INTRON sif
2L	19198089	2L_19198089_SNP [dm3] 2L_19198089_SNP [dm6]	C	T	1.506e^-4	0.811	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23570593	3R_23570593_SNP [dm3] 3R_27744871_SNP [dm6]	T	C	1.508e^-4	0.811	INTRON Ets98B
2L	1032017	2L_1032017_SNP [dm3] 2L_1032017_SNP [dm6]	A	G	1.509e^-4	0.811	INTRON IA-2
3L	21767930	3L_21767930_SNP [dm3] 3L_21774830_SNP [dm6]	G	T	1.516e^-4	0.811	UPSTREAM CG42552 INTRON CG42689
2L	3518628	2L_3518628_SNP [dm3] 2L_3518628_SNP [dm6]	T	G	1.517e^-4	0.811	NON_SYNONYMOUS_CODING CG3213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2268708	3L_2268708_SNP [dm3] 3L_2268708_SNP [dm6]	T	G	1.517e^-4	0.811	UPSTREAM CG32302 DOWNSTREAM obst-I INTERGENIC	TF binding site mE1_TFBS_cad
3R	26354998	3R_26354998_SNP [dm3] 3R_30529276_SNP [dm6]	T	C	1.531e^-4	0.811	DOWNSTREAM CR45552 INTRON CR45552	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5458527	2L_5458527_SNP [dm3] 2L_5458527_SNP [dm6]	A	G	1.534e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	20993101	2L_20993101_SNP [dm3] 2L_20993101_SNP [dm6]	G	A	1.536e^-4	0.811	INTRON CG42238
3L	3634969	3L_3634969_SNP [dm3] 3L_3634969_SNP [dm6]	C	A	1.541e^-4	0.811	INTRON dar1
2L	17700672	2L_17700672_SNP [dm3] 2L_17700672_SNP [dm6]	T	A	1.555e^-4	0.811	INTRON CadN
3R	15551554	3R_15551554_SNP [dm3] 3R_19725832_SNP [dm6]	T	C	1.576e^-4	0.811	INTERGENIC
X	6130277	X_6130277_SNP [dm3] X_6236244_SNP [dm6]	A	T	1.582e^-4	0.811	DOWNSTREAM CG14446 INTERGENIC
X	18174995	X_18174995_SNP [dm3] X_18280962_SNP [dm6]	A	T	1.585e^-4	0.811	INTRON upd3
2L	1033272	2L_1033272_SNP [dm3] 2L_1033272_SNP [dm6]	C	A	1.586e^-4	0.811	INTRON IA-2
3R	25033219	3R_25033219_SNP [dm3] 3R_29207497_SNP [dm6]	A	C	1.590e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	10500465	3R_10500465_SNP [dm3] 3R_14674743_SNP [dm6]	A	C	1.593e^-4	0.811	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	8332707	X_8332707_SNP [dm3] X_8438674_SNP [dm6]	C	T	1.601e^-4	0.811	UPSTREAM CG1440 & 1 other INTRON CG1440	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2420027	3L_2420027_SNP [dm3] 3L_2420027_SNP [dm6]	C	T	1.602e^-4	0.811	INTRON CG45186
3L	15918401	3L_15918401_SNP [dm3] 3L_15925301_SNP [dm6]	T	C	1.606e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4443523	2L_4443523_SNP [dm3] 2L_4443523_SNP [dm6]	A	G	1.612e^-4	0.811	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14574254	3L_14574254_SNP [dm3] 3L_14581154_SNP [dm6]	C	T	1.613e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15912458	3L_15912458_SNP [dm3] 3L_15919358_SNP [dm6]	G	A	1.622e^-4	0.811	INTRON sff
2L	11037867	2L_11037867_SNP [dm3] 2L_11037867_SNP [dm6]	G	A	1.625e^-4	0.811	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4280260	2L_4280260_SNP [dm3] 2L_4280260_SNP [dm6]	A	G	1.629e^-4	0.811	UPSTREAM Art2 INTRON Art2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8402370	3R_8402370_SNP [dm3] 3R_12576648_SNP [dm6]	G	A	1.635e^-4	0.811	INTRON Octbeta2R
2L	3445701	2L_3445701_SNP [dm3] 2L_3445701_SNP [dm6]	G	T	1.636e^-4	0.811	UPSTREAM CG2772 INTERGENIC
3R	19102319	3R_19102319_SNP [dm3] 3R_23276597_SNP [dm6]	C	T	1.638e^-4	0.811	INTRON orb
3R	26612735	3R_26612735_INS [dm3] 3R_30787013_INS [dm6]	C	CA	1.640e^-4	0.811	UTR_3_PRIME zfh1
3R	27139503	3R_27139503_SNP [dm3] 3R_31313781_SNP [dm6]	C	T	1.640e^-4	0.811	INTRON CG34347	TF binding site mE1_TFBS_inv
3R	4507055	3R_4507055_SNP [dm3] 3R_8681333_SNP [dm6]	T	C	1.642e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	18177507	X_18177507_SNP [dm3] X_18283474_SNP [dm6]	C	T	1.643e^-4	0.811	SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4440286	2L_4440286_SNP [dm3] 2L_4440286_SNP [dm6]	G	C	1.643e^-4	0.811	UPSTREAM CG15431 INTRON CG15431
2L	4411948	2L_4411948_SNP [dm3] 2L_4411948_SNP [dm6]	C	G	1.648e^-4	0.811	DOWNSTREAM CG43055 INTRON CG15431
2R	9330200	2R_9330200_SNP [dm3] 2R_13442695_SNP [dm6]	C	T	1.649e^-4	0.811	DOWNSTREAM cnn INTRON cnn
2R	20113254	2R_20113254_INS [dm3] 2R_24225731_INS [dm6]	C	CGCCCAGC	1.669e^-4	0.811	INTRON CG30419	TF binding site mE1_TFBS_chinmo
3R	19546958	3R_19546958_SNP [dm3] 3R_23721236_SNP [dm6]	T	A	1.677e^-4	0.811	INTRON CG10232
2L	18875678	2L_18875678_SNP [dm3] 2L_18875678_SNP [dm6]	T	G	1.677e^-4	0.811	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8719043	2L_8719043_SNP [dm3] 2L_8719043_SNP [dm6]	C	T	1.678e^-4	0.811	INTRON raw
3R	14383993	3R_14383993_SNP [dm3] 3R_18558271_SNP [dm6]	C	T	1.691e^-4	0.811	INTERGENIC
2L	11499924	2L_11499924_SNP [dm3] 2L_11499924_SNP [dm6]	T	A	1.693e^-4	0.811	UPSTREAM CG6488 INTERGENIC
2R	4107481	2R_4107481_SNP [dm3] 2R_8219976_SNP [dm6]	C	G	1.703e^-4	0.811	SYNONYMOUS_CODING LRP1
3R	22755301	3R_22755301_SNP [dm3] 3R_26929579_SNP [dm6]	G	A	1.704e^-4	0.811	INTRON sda
X	5117820	X_5117820_SNP [dm3] X_5223787_SNP [dm6]	T	A	1.711e^-4	0.811	INTRON CG15465 & 1 other
2R	18366824	2R_18366824_SNP [dm3] 2R_22479319_SNP [dm6]	G	T	1.717e^-4	0.811	INTRON CG4752	TF binding site mE1_TFBS_cad
2L	2644325	2L_2644325_SNP [dm3] 2L_2644325_SNP [dm6]	C	A	1.717e^-4	0.811	INTERGENIC
3R	26483397	3R_26483397_SNP [dm3] 3R_30657675_SNP [dm6]	A	T	1.722e^-4	0.811	INTERGENIC
2L	8404728	2L_8404728_SNP [dm3] 2L_8404728_SNP [dm6]	C	A	1.734e^-4	0.811	SYNONYMOUS_CODING emb UPSTREAM CR44991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12580599	2L_12580599_SNP [dm3] 2L_12580599_SNP [dm6]	C	T	1.734e^-4	0.811	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	25329656	3R_25329656_SNP [dm3] 3R_29503934_SNP [dm6]	A	T	1.737e^-4	0.811	UPSTREAM Trc8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	10814263	3L_10814263_SNP [dm3] 3L_10821163_SNP [dm6]	C	A	1.739e^-4	0.811	INTERGENIC
3L	5307082	3L_5307082_SNP [dm3] 3L_5313982_SNP [dm6]	A	T	1.758e^-4	0.811	INTERGENIC
3R	26352633	3R_26352633_DEL [dm3] 3R_30526911_DEL [dm6]	TTTTT	T	1.758e^-4	0.811	INTRON jdp
X	14072653	X_14072653_SNP [dm3] X_14178620_SNP [dm6]	A	T	1.765e^-4	0.811	DOWNSTREAM CG11581 INTERGENIC
2R	602938	2R_602938_INS [dm3] 2R_4715433_INS [dm6]	A	ATTTAAGCGA	1.772e^-4	0.811	INTRON Nipped-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	14176903	2L_14176903_SNP [dm3] 2L_14176903_SNP [dm6]	C	A	1.773e^-4	0.811	INTRON CG43333
3R	24502441	3R_24502441_SNP [dm3] 3R_28676719_SNP [dm6]	C	G	1.775e^-4	0.811	INTRON CG9990
3R	22987341	3R_22987341_SNP [dm3] 3R_27161619_SNP [dm6]	A	G	1.779e^-4	0.811	SPLICE_SITE_REGION CG5909 INTRON CG5909
2L	8404815	2L_8404815_SNP [dm3] 2L_8404815_SNP [dm6]	C	T	1.790e^-4	0.811	SYNONYMOUS_CODING emb UPSTREAM CR44991	TF binding site mE1_TFBS_sens
3R	15661250	3R_15661250_SNP [dm3] 3R_19835528_SNP [dm6]	C	T	1.791e^-4	0.811	INTRON bnl	TF binding site BDTNP1_TFBS_dl
2L	9594952	2L_9594952_SNP [dm3] 2L_9594952_SNP [dm6]	T	C	1.792e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs
3R	16006743	3R_16006743_DEL [dm3] 3R_20181021_DEL [dm6]	GT	G	1.792e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	4571344	3R_4571344_SNP [dm3] 3R_8745622_SNP [dm6]	A	G	1.795e^-4	0.811	UTR_5_PRIME CG9801 INTRON CG9801
3L	21765649	3L_21765649_SNP [dm3] 3L_21772549_SNP [dm6]	A	T	1.811e^-4	0.811	INTRON CG42689
3R	25543236	3R_25543236_SNP [dm3] 3R_29717514_SNP [dm6]	C	A	1.820e^-4	0.811	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16173956	3R_16173956_SNP [dm3] 3R_20348234_SNP [dm6]	T	A	1.823e^-4	0.811	INTERGENIC
3L	8216931	3L_8216931_SNP [dm3] 3L_8223831_SNP [dm6]	G	A	1.824e^-4	0.811	DOWNSTREAM CG13678 INTERGENIC
2R	8486701	2R_8486701_SNP [dm3] 2R_12599196_SNP [dm6]	T	G	1.828e^-4	0.811	INTRON Amph
3R	22764772	3R_22764772_SNP [dm3] 3R_26939050_SNP [dm6]	C	A	1.828e^-4	0.811	SYNONYMOUS_CODING sda
2R	9346693	2R_9346693_SNP [dm3] 2R_13459188_SNP [dm6]	C	G	1.832e^-4	0.811	NON_SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	952151	2L_952151_SNP [dm3] 2L_952151_SNP [dm6]	T	G	1.839e^-4	0.811	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13921672	2R_13921672_SNP [dm3] 2R_18034167_SNP [dm6]	G	T	1.841e^-4	0.811	INTERGENIC
3R	25691636	3R_25691636_SNP [dm3] 3R_29865914_SNP [dm6]	A	T	1.842e^-4	0.811	UPSTREAM Zip99C INTRON Zip99C
2R	8297677	2R_8297677_SNP [dm3] 2R_12410172_SNP [dm6]	C	T	1.847e^-4	0.811	UPSTREAM CG33627 DOWNSTREAM CG30050 INTRON CG33626
3R	26585662	3R_26585662_INS [dm3] 3R_30759940_INS [dm6]	T	TTT	1.852e^-4	0.811	INTERGENIC
2L	19268368	2L_19268368_SNP [dm3] 2L_19268368_SNP [dm6]	A	C	1.855e^-4	0.811	DOWNSTREAM CR44190 INTERGENIC
3R	25791708	3R_25791708_SNP [dm3] 3R_29965986_SNP [dm6]	G	A	1.856e^-4	0.811	INTRON TkR99D
2R	20113164	2R_20113164_SNP [dm3] 2R_24225641_SNP [dm6]	C	T	1.857e^-4	0.811	INTRON CG30419	TF binding site mE1_TFBS_chinmo
3R	22779557	3R_22779557_SNP [dm3] 3R_26953835_SNP [dm6]	T	A	1.859e^-4	0.811	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	23447804	3R_23447804_DEL [dm3] 3R_27622082_DEL [dm6]	AGAAA	A	1.861e^-4	0.811	INTRON Tusp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22769976	3R_22769976_SNP [dm3] 3R_26944254_SNP [dm6]	C	T	1.864e^-4	0.811	INTRON sda
2L	8718575	2L_8718575_SNP [dm3] 2L_8718575_SNP [dm6]	C	A	1.873e^-4	0.811	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2389985	3L_2389985_SNP [dm3] 3L_2389985_SNP [dm6]	C	A	1.878e^-4	0.811	SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22149308	3L_22149308_SNP [dm3] 3L_22156208_SNP [dm6]	C	T	1.892e^-4	0.811	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19100507	3R_19100507_SNP [dm3] 3R_23274785_SNP [dm6]	T	C	1.894e^-4	0.811	INTRON orb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16938306	3R_16938306_SNP [dm3] 3R_21112584_SNP [dm6]	A	G	1.895e^-4	0.811	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15393938	3R_15393938_SNP [dm3] 3R_19568216_SNP [dm6]	A	T	1.895e^-4	0.811	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
3L	15918576	3L_15918576_INS [dm3] 3L_15925476_INS [dm6]	G	GAGAAAAATAAAAGTTTAAA...	1.908e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11037875	2L_11037875_SNP [dm3] 2L_11037875_SNP [dm6]	A	C	1.911e^-4	0.811	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1251741	3L_1251741_SNP [dm3] 3L_1251741_SNP [dm6]	C	T	1.914e^-4	0.811	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
X	17610235	X_17610235_SNP [dm3] X_17716202_SNP [dm6]	G	A	1.914e^-4	0.811	INTRON CG42684
3L	5307075	3L_5307075_SNP [dm3] 3L_5313975_SNP [dm6]	T	A	1.915e^-4	0.811	INTERGENIC
3R	22987039	3R_22987039_SNP [dm3] 3R_27161317_SNP [dm6]	C	A	1.922e^-4	0.811	UTR_5_PRIME CG5909
3L	20967694	3L_20967694_SNP [dm3] 3L_20974594_SNP [dm6]	G	C	1.924e^-4	0.811	SYNONYMOUS_CODING CG33286
3R	23636036	3R_23636036_SNP [dm3] 3R_27810314_SNP [dm6]	C	A	1.928e^-4	0.811	INTRON CG34353
X	18175476	X_18175476_SNP [dm3] X_18281443_SNP [dm6]	A	T	1.930e^-4	0.811	INTRON upd3	TF binding site mE1_TFBS_sens
2R	8301035	2R_8301035_SNP [dm3] 2R_12413530_SNP [dm6]	G	A	1.932e^-4	0.811	UPSTREAM Cpr49Ah INTERGENIC
3R	17001974	3R_17001974_SNP [dm3] 3R_21176252_SNP [dm6]	G	A	1.934e^-4	0.811	INTRON SNF4Agamma
X	5469309	X_5469309_DEL [dm3] X_5575276_DEL [dm6]	TT	T	1.939e^-4	0.811	INTERGENIC
3L	20676127	3L_20676127_SNP [dm3] 3L_20683027_SNP [dm6]	G	T	1.942e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15897630	3R_15897630_SNP [dm3] 3R_20071908_SNP [dm6]	A	T	1.947e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22947996	3R_22947996_SNP [dm3] 3R_27122274_SNP [dm6]	A	G	1.949e^-4	0.811	NON_SYNONYMOUS_CODING CG6059 DOWNSTREAM CG5882	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6281762	3L_6281762_SNP [dm3] 3L_6288662_SNP [dm6]	G	A	1.952e^-4	0.811	INTERGENIC
2R	20502199	2R_20502199_SNP [dm3] 2R_24614676_SNP [dm6]	C	T	1.976e^-4	0.811	UPSTREAM CG4741 DOWNSTREAM CG3608 & 1 other INTRON CG4741
3L	20214499	3L_20214499_SNP [dm3] 3L_20221399_SNP [dm6]	A	G	1.982e^-4	0.811	UPSTREAM CG6933 & 1 other INTERGENIC
2L	5457494	2L_5457494_SNP [dm3] 2L_5457494_SNP [dm6]	C	T	1.983e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_slp1
2R	3602898	2R_3602898_SNP [dm3] 2R_7715393_SNP [dm6]	G	A	1.986e^-4	0.811	INTRON CG1946
2L	8612293	2L_8612293_SNP [dm3] 2L_8612293_SNP [dm6]	C	T	2.002e^-4	0.811	INTRON Sema-1a
3L	17676855	3L_17676855_SNP [dm3] 3L_17683755_SNP [dm6]	C	A	2.005e^-4	0.811	DOWNSTREAM CG34251 INTERGENIC
2L	1032025	2L_1032025_DEL [dm3] 2L_1032025_DEL [dm6]	GCACC	G	2.006e^-4	0.811	INTRON IA-2
3L	21637778	3L_21637778_SNP [dm3] 3L_21644678_SNP [dm6]	T	C	2.018e^-4	0.811	UPSTREAM CG43980 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13982942	3R_13982942_SNP [dm3] 3R_18157220_SNP [dm6]	C	T	2.022e^-4	0.811	UPSTREAM CR45103 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8423994	2L_8423994_SNP [dm3] 2L_8423994_SNP [dm6]	C	T	2.022e^-4	0.811	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	15775584	2L_15775584_SNP [dm3] 2L_15775584_SNP [dm6]	A	T	2.029e^-4	0.811	DOWNSTREAM CG43760 INTERGENIC
3R	22770497	3R_22770497_SNP [dm3] 3R_26944775_SNP [dm6]	C	T	2.041e^-4	0.811	UTR_3_PRIME sda UPSTREAM CG14252
3R	27455511	3R_27455511_SNP [dm3] 3R_31629789_SNP [dm6]	T	C	2.042e^-4	0.811	INTRON kek6
3L	8731399	3L_8731399_SNP [dm3] 3L_8738299_SNP [dm6]	T	A	2.051e^-4	0.811	INTRON Prm
3R	22779526	3R_22779526_SNP [dm3] 3R_26953804_SNP [dm6]	A	G	2.059e^-4	0.811	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25015665	3R_25015665_SNP [dm3] 3R_29189943_SNP [dm6]	G	A	2.060e^-4	0.811	INTRON CG14509
2L	14419423	2L_14419423_SNP [dm3] 2L_14419423_SNP [dm6]	A	T	2.062e^-4	0.811	INTERGENIC
3R	24049642	3R_24049642_DEL [dm3] 3R_28223920_DEL [dm6]	TT	T	2.063e^-4	0.811	INTRON CG34354
3R	9190929	3R_9190929_SNP [dm3] 3R_13365207_SNP [dm6]	G	C	2.066e^-4	0.811	UTR_5_PRIME Dic1 UPSTREAM poly INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	22779547	3R_22779547_SNP [dm3] 3R_26953825_SNP [dm6]	T	C	2.067e^-4	0.811	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	10221419	3L_10221419_SNP [dm3] 3L_10228319_SNP [dm6]	G	A	2.067e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	2985728	X_2985728_SNP [dm3] X_3091695_SNP [dm6]	T	G	2.078e^-4	0.811	INTRON kirre	regulatory region REDfly_CRMs
X	17179596	X_17179596_SNP [dm3] X_17285563_SNP [dm6]	G	A	2.079e^-4	0.811	DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
3L	3551261	3L_3551261_DEL [dm3] 3L_3551261_DEL [dm6]	CATC	C	2.085e^-4	0.811	INTRON Eip63E
3L	13267225	3L_13267225_SNP [dm3] 3L_13274125_SNP [dm6]	C	G	2.088e^-4	0.811	INTRON caps
2R	11941882	2R_11941882_SNP [dm3] 2R_16054377_SNP [dm6]	C	G	2.089e^-4	0.811	INTRON CG8405
2R	13883158	2R_13883158_SNP [dm3] 2R_17995653_SNP [dm6]	T	C	2.089e^-4	0.811	INTRON dpr13
3L	12313321	3L_12313321_SNP [dm3] 3L_12320221_SNP [dm6]	T	A	2.092e^-4	0.811	INTERGENIC
3R	25185241	3R_25185241_SNP [dm3] 3R_29359519_SNP [dm6]	C	T	2.096e^-4	0.811	INTERGENIC
3R	4659479	3R_4659479_DEL [dm3] 3R_8833757_DEL [dm6]	AGGTGGA	A	2.096e^-4	0.811	INTRON pyd	TF binding site mE1_TFBS_cad
2R	19008800	2R_19008800_SNP [dm3] 2R_23121277_SNP [dm6]	G	A	2.107e^-4	0.811	INTERGENIC
3L	6760287	3L_6760287_SNP [dm3] 3L_6767187_SNP [dm6]	C	T	2.108e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	20111642	2R_20111642_SNP [dm3] 2R_24224119_SNP [dm6]	A	G	2.115e^-4	0.811	INTRON CG30419	TF binding site mE1_TFBS_chinmo
X	18176958	X_18176958_SNP [dm3] X_18282925_SNP [dm6]	T	A	2.117e^-4	0.811	INTRON upd3	TF binding site BDTNP1_TFBS_dl
3R	21933746	3R_21933746_SNP [dm3] 3R_26108024_SNP [dm6]	T	C	2.119e^-4	0.811	UTR_5_PRIME CG31324 INTRON CG31324
3R	26355196	3R_26355196_INS [dm3] 3R_30529474_INS [dm6]	A	AA	2.130e^-4	0.811	UPSTREAM CR45553 DOWNSTREAM CR45552 INTRON CR45552
3L	10879233	3L_10879233_SNP [dm3] 3L_10886133_SNP [dm6]	A	G	2.138e^-4	0.811	UTR_5_PRIME CG6404 UPSTREAM CG6404	TF binding site BDTNP1_TFBS_dl
3R	22954757	3R_22954757_SNP [dm3] 3R_27129035_SNP [dm6]	A	T	2.142e^-4	0.811	INTRON CG6051
3L	16564330	3L_16564330_SNP [dm3] 3L_16571230_SNP [dm6]	T	A	2.147e^-4	0.811	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14177477	2L_14177477_SNP [dm3] 2L_14177477_SNP [dm6]	A	G	2.148e^-4	0.811	INTRON CG43333
2L	15775773	2L_15775773_MNP [dm3] 2L_15775773_MNP [dm6]	GTTT	CGAA	2.152e^-4	0.811	DOWNSTREAM CG43760 INTERGENIC
X	18176938	X_18176938_SNP [dm3] X_18282905_SNP [dm6]	G	A	2.156e^-4	0.811	INTRON upd3	TF binding site BDTNP1_TFBS_dl
3R	19560928	3R_19560928_SNP [dm3] 3R_23735206_SNP [dm6]	G	T	2.156e^-4	0.811	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14060804	3R_14060804_SNP [dm3] 3R_18235082_SNP [dm6]	C	T	2.163e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25782026	3R_25782026_SNP [dm3] 3R_29956304_SNP [dm6]	T	C	2.165e^-4	0.811	INTRON TkR99D
2R	15282895	2R_15282895_SNP [dm3] 2R_19395390_SNP [dm6]	A	G	2.166e^-4	0.811	DOWNSTREAM cer INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	22149731	3L_22149731_SNP [dm3] 3L_22156631_SNP [dm6]	C	T	2.180e^-4	0.811	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	10833844	3L_10833844_SNP [dm3] 3L_10840744_SNP [dm6]	T	A	2.186e^-4	0.811	INTERGENIC
3R	23570618	3R_23570618_SNP [dm3] 3R_27744896_SNP [dm6]	G	A	2.187e^-4	0.811	INTRON Ets98B
3R	9131833	3R_9131833_SNP [dm3] 3R_13306111_SNP [dm6]	T	A	2.187e^-4	0.811	INTRON CG32473
2L	11037936	2L_11037936_DEL [dm3] 2L_11037936_DEL [dm6]	GTA	G	2.193e^-4	0.811	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	11037940	2L_11037940_DEL [dm3] 2L_11037940_DEL [dm6]	GTATCTTA	G	2.193e^-4	0.811	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	10268472	3R_10268472_DEL [dm3] 3R_14442750_DEL [dm6]	CGTTCCATGTTCTCGAGC...	C	2.201e^-4	0.811	INTRON cv-c
X	7210461	X_7210461_DEL [dm3] X_7316428_DEL [dm6]	TTGCGGT	T	2.208e^-4	0.811	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8188473	2R_8188473_SNP [dm3] 2R_12300968_SNP [dm6]	T	C	2.211e^-4	0.811	DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	15918612	3L_15918612_SNP [dm3] 3L_15925512_SNP [dm6]	C	G	2.218e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8298547	2R_8298547_SNP [dm3] 2R_12411042_SNP [dm6]	T	C	2.219e^-4	0.811	NON_SYNONYMOUS_CODING CG33627 DOWNSTREAM CG33626
3R	16940423	3R_16940423_SNP [dm3] 3R_21114701_SNP [dm6]	G	A	2.223e^-4	0.811	INTRON Rab11
2L	1032010	2L_1032010_SNP [dm3] 2L_1032010_SNP [dm6]	G	A	2.224e^-4	0.811	INTRON IA-2
3L	10879050	3L_10879050_SNP [dm3] 3L_10885950_SNP [dm6]	T	C	2.226e^-4	0.811	SYNONYMOUS_CODING CG6404	TF binding site BDTNP1_TFBS_dl
3R	6428451	3R_6428451_SNP [dm3] 3R_10602729_SNP [dm6]	A	C	2.228e^-4	0.811	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18813889	X_18813889_SNP [dm3] X_18919856_SNP [dm6]	T	C	2.230e^-4	0.811	INTERGENIC
2R	16486181	2R_16486181_SNP [dm3] 2R_20598676_SNP [dm6]	G	A	2.238e^-4	0.811	SYNONYMOUS_CODING bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22719612	3R_22719612_SNP [dm3] 3R_26893890_SNP [dm6]	G	C	2.244e^-4	0.811	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	25086503	3R_25086503_SNP [dm3] 3R_29260781_SNP [dm6]	C	G	2.246e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	12243843	3R_12243843_SNP [dm3] 3R_16418121_SNP [dm6]	T	C	2.251e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	22779418	3R_22779418_SNP [dm3] 3R_26953696_SNP [dm6]	T	C	2.252e^-4	0.811	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	16940846	3R_16940846_SNP [dm3] 3R_21115124_SNP [dm6]	G	A	2.267e^-4	0.811	INTRON Rab11
2L	4414730	2L_4414730_SNP [dm3] 2L_4414730_SNP [dm6]	A	C	2.279e^-4	0.811	INTRON CG15431
3L	15400755	3L_15400755_SNP [dm3] 3L_15407655_SNP [dm6]	C	T	2.284e^-4	0.811	UPSTREAM CG33259 INTERGENIC
2L	10534799	2L_10534799_SNP [dm3] 2L_10534799_SNP [dm6]	C	T	2.286e^-4	0.811	UTR_5_PRIME CG18302
2L	14181495	2L_14181495_SNP [dm3] 2L_14181495_SNP [dm6]	G	T	2.288e^-4	0.811	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	5228235	3R_5228235_SNP [dm3] 3R_9402513_SNP [dm6]	T	G	2.291e^-4	0.811	UTR_3_PRIME CG8132 DOWNSTREAM CG9356	TF binding site mE1_TFBS_chinmo
3L	22155297	3L_22155297_DEL [dm3] 3L_22162197_DEL [dm6]	GAGAAAA	G	2.293e^-4	0.811	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	11610263	2L_11610263_SNP [dm3] 2L_11610263_SNP [dm6]	T	C	2.296e^-4	0.811	DOWNSTREAM spag4 INTRON kek2
2R	8898302	2R_8898302_SNP [dm3] 2R_13010797_SNP [dm6]	T	A	2.304e^-4	0.811	INTERGENIC
3R	3540281	3R_3540281_SNP [dm3] 3R_7714559_SNP [dm6]	A	G	2.310e^-4	0.811	INTERGENIC
3R	19125164	3R_19125164_SNP [dm3] 3R_23299442_SNP [dm6]	C	T	2.321e^-4	0.811	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11220163	2L_11220163_SNP [dm3] 2L_11220163_SNP [dm6]	G	T	2.323e^-4	0.811	INTRON ab	TF binding site BDTNP1_TFBS_dl
3R	25414425	3R_25414425_SNP [dm3] 3R_29588703_SNP [dm6]	A	T	2.331e^-4	0.811	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
2L	3969848	2L_3969848_SNP [dm3] 2L_3969848_SNP [dm6]	G	C	2.334e^-4	0.811	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2529406	3L_2529406_SNP [dm3] 3L_2529406_SNP [dm6]	T	C	2.338e^-4	0.811	INTRON Spn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12648234	2L_12648234_SNP [dm3] 2L_12648234_SNP [dm6]	T	C	2.352e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	19572368	3R_19572368_SNP [dm3] 3R_23746646_SNP [dm6]	G	A	2.354e^-4	0.811	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16335224	3L_16335224_SNP [dm3] 3L_16342124_SNP [dm6]	G	C	2.367e^-4	0.811	NON_SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
3L	13037095	3L_13037095_SNP [dm3] 3L_13043995_SNP [dm6]	A	T	2.369e^-4	0.811	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10393763	2L_10393763_SNP [dm3] 2L_10393763_SNP [dm6]	T	C	2.377e^-4	0.811	DOWNSTREAM Mdh1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	15053467	3L_15053467_SNP [dm3] 3L_15060367_SNP [dm6]	A	T	2.381e^-4	0.811	DOWNSTREAM CG13460 INTRON Sytbeta
3R	11613169	3R_11613169_SNP [dm3] 3R_15787447_SNP [dm6]	A	G	2.382e^-4	0.811	SYNONYMOUS_CODING CG9590	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15918421	3L_15918421_SNP [dm3] 3L_15925321_SNP [dm6]	G	C	2.383e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10355353	3L_10355353_SNP [dm3] 3L_10362253_SNP [dm6]	T	A	2.390e^-4	0.811	EXON CR44327	TF binding site BDTNP1_TFBS_dl
3L	3919407	3L_3919407_SNP [dm3] 3L_3919407_SNP [dm6]	A	T	2.396e^-4	0.811	INTRON Eip63F-1
3R	21392708	3R_21392708_SNP [dm3] 3R_25566986_SNP [dm6]	A	T	2.402e^-4	0.811	INTRON msi
3L	13260581	3L_13260581_SNP [dm3] 3L_13267481_SNP [dm6]	C	T	2.407e^-4	0.811	INTRON caps	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10814142	3L_10814142_SNP [dm3] 3L_10821042_SNP [dm6]	A	C	2.407e^-4	0.811	INTERGENIC
3L	22127401	3L_22127401_SNP [dm3] 3L_22134301_SNP [dm6]	G	A	2.410e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	5699522	3R_5699522_SNP [dm3] 3R_9873800_SNP [dm6]	T	C	2.411e^-4	0.811	UPSTREAM Glut4EF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22931280	3L_22931280_SNP [dm3] 3L_22938180_SNP [dm6]	C	T	2.413e^-4	0.811	INTERGENIC
2R	16561850	2R_16561850_SNP [dm3] 2R_20674345_SNP [dm6]	G	A	2.416e^-4	0.811	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5816135	2L_5816135_SNP [dm3] 2L_5816135_SNP [dm6]	T	C	2.422e^-4	0.811	INTERGENIC
3R	19560933	3R_19560933_SNP [dm3] 3R_23735211_SNP [dm6]	G	A	2.432e^-4	0.811	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4455632	3R_4455632_INS [dm3] 3R_8629910_INS [dm6]	A	ATGATATAGCCATA...	2.440e^-4	0.811	UTR_3_PRIME 5-HT2B
3L	13037081	3L_13037081_SNP [dm3] 3L_13043981_SNP [dm6]	C	A	2.446e^-4	0.811	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18177660	X_18177660_SNP [dm3] X_18283627_SNP [dm6]	G	A	2.450e^-4	0.811	SYNONYMOUS_CODING upd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10534772	2L_10534772_SNP [dm3] 2L_10534772_SNP [dm6]	C	T	2.455e^-4	0.811	UTR_5_PRIME CG18302
3L	11050332	3L_11050332_DEL [dm3] 3L_11057232_DEL [dm6]	ACGTCGGATTCGAAA...	A	2.456e^-4	0.811	INTRON CG7888
2R	7129132	2R_7129132_SNP [dm3] 2R_11241627_SNP [dm6]	A	C	2.461e^-4	0.811	DOWNSTREAM Listericin INTERGENIC
3L	14198038	3L_14198038_SNP [dm3] 3L_14204938_SNP [dm6]	T	C	2.464e^-4	0.811	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	3005245	X_3005245_INS [dm3] X_3111212_INS [dm6]	A	ACCACGTGACAATCGAA...	2.472e^-4	0.811	INTRON kirre
X	9337734	X_9337734_SNP [dm3] X_9443701_SNP [dm6]	T	G	2.474e^-4	0.811	INTRON mgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8402426	3R_8402426_SNP [dm3] 3R_12576704_SNP [dm6]	T	C	2.479e^-4	0.811	INTRON Octbeta2R
3L	3919516	3L_3919516_SNP [dm3] 3L_3919516_SNP [dm6]	T	G	2.495e^-4	0.811	INTRON Eip63F-1
3R	20883740	3R_20883740_SNP [dm3] 3R_25058018_SNP [dm6]	C	T	2.499e^-4	0.811	INTRON Unc-13-4B
3L	5213032	3L_5213032_SNP [dm3] 3L_5219932_SNP [dm6]	C	A	2.509e^-4	0.811	INTRON shep
3L	15258505	3L_15258505_INS [dm3] 3L_15265405_INS [dm6]	T	TGCGAT	2.511e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19907281	3R_19907281_SNP [dm3] 3R_24081559_SNP [dm6]	A	G	2.512e^-4	0.811	INTRON 4EHP
3L	21657367	3L_21657367_SNP [dm3] 3L_21664267_SNP [dm6]	G	A	2.513e^-4	0.811	SYNONYMOUS_CODING CG43980	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8404785	2L_8404785_SNP [dm3] 2L_8404785_SNP [dm6]	A	G	2.523e^-4	0.811	SYNONYMOUS_CODING emb UPSTREAM CR44991	TF binding site mE1_TFBS_sens
2L	5117518	2L_5117518_SNP [dm3] 2L_5117518_SNP [dm6]	G	A	2.531e^-4	0.811	INTRON Msp300
X	17125781	X_17125781_SNP [dm3] X_17231748_SNP [dm6]	A	T	2.550e^-4	0.811	UPSTREAM CG10597 INTERGENIC
X	17823025	X_17823025_INS [dm3] X_17928992_INS [dm6]	T	TT	2.551e^-4	0.811	UTR_3_PRIME Sh DOWNSTREAM Sh
3R	21465818	3R_21465818_SNP [dm3] 3R_25640096_SNP [dm6]	T	A	2.554e^-4	0.811	INTRON jigr1
3L	10997396	3L_10997396_SNP [dm3] 3L_11004296_SNP [dm6]	T	C	2.554e^-4	0.811	INTRON klu
3L	10997397	3L_10997397_SNP [dm3] 3L_11004297_SNP [dm6]	G	A	2.554e^-4	0.811	INTRON klu
2R	10682771	2R_10682771_SNP [dm3] 2R_14795266_SNP [dm6]	C	A	2.556e^-4	0.811	INTRON kn
3R	4654254	3R_4654254_SNP [dm3] 3R_8828532_SNP [dm6]	A	T	2.562e^-4	0.811	INTRON pyd
3R	19196624	3R_19196624_SNP [dm3] 3R_23370902_SNP [dm6]	C	G	2.569e^-4	0.811	INTERGENIC
3L	1252274	3L_1252274_SNP [dm3] 3L_1252274_SNP [dm6]	A	G	2.571e^-4	0.811	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3R	20798802	3R_20798802_SNP [dm3] 3R_24973080_SNP [dm6]	T	C	2.579e^-4	0.811	INTERGENIC
2L	2848012	2L_2848012_SNP [dm3] 2L_2848012_SNP [dm6]	C	T	2.581e^-4	0.811	SYNONYMOUS_CODING CG2983 UPSTREAM CG3117 DOWNSTREAM CG3104
3R	22312998	3R_22312998_SNP [dm3] 3R_26487276_SNP [dm6]	G	A	2.595e^-4	0.811	INTRON plum	TF binding site mE1_TFBS_inv
2L	4427526	2L_4427526_SNP [dm3] 2L_4427526_SNP [dm6]	A	G	2.597e^-4	0.811	INTRON CG15431
3L	5475122	3L_5475122_SNP [dm3] 3L_5482022_SNP [dm6]	C	T	2.599e^-4	0.811	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15914183	3L_15914183_INS [dm3] 3L_15921083_INS [dm6]	G	GATTGCCAATGGACATTTGT...	2.601e^-4	0.811	INTRON sff	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2R	13495769	2R_13495769_SNP [dm3] 2R_17608264_SNP [dm6]	C	A	2.607e^-4	0.811	NON_SYNONYMOUS_CODING CG10936
3R	18765153	3R_18765153_INS [dm3] 3R_22939431_INS [dm6]	G	GTAACG	2.613e^-4	0.811	INTRON klg
2R	15869655	2R_15869655_SNP [dm3] 2R_19982150_SNP [dm6]	T	G	2.619e^-4	0.811	UTR_5_PRIME CG8654 INTRON CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	11037893	2L_11037893_SNP [dm3] 2L_11037893_SNP [dm6]	G	A	2.622e^-4	0.811	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14176744	2L_14176744_SNP [dm3] 2L_14176744_SNP [dm6]	C	G	2.627e^-4	0.811	INTRON CG43333
2L	18152688	2L_18152688_SNP [dm3] 2L_18152688_SNP [dm6]	C	T	2.634e^-4	0.811	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	17992922	3R_17992922_SNP [dm3] 3R_22167200_SNP [dm6]	G	A	2.634e^-4	0.811	INTRON SKIP	TF binding site mE1_TFBS_Kr
3R	16761331	3R_16761331_SNP [dm3] 3R_20935609_SNP [dm6]	T	A	2.636e^-4	0.811	INTRON CG31191
2L	2392040	2L_2392040_SNP [dm3] 2L_2392040_SNP [dm6]	A	G	2.648e^-4	0.811	UTR_5_PRIME VGlut
2R	9758782	2R_9758782_SNP [dm3] 2R_13871277_SNP [dm6]	G	C	2.655e^-4	0.811	INTRON shot
3L	22105206	3L_22105206_SNP [dm3] 3L_22112106_SNP [dm6]	C	T	2.666e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16006402	3R_16006402_SNP [dm3] 3R_20180680_SNP [dm6]	G	A	2.670e^-4	0.811	INTERGENIC
X	13844553	X_13844553_DEL [dm3] X_13950520_DEL [dm6]	GC	G	2.675e^-4	0.811	INTRON mamo
X	14920150	X_14920150_DEL [dm3] X_15026117_DEL [dm6]	TT	T	2.675e^-4	0.811	INTRON hiw & 1 other
3R	15897629	3R_15897629_SNP [dm3] 3R_20071907_SNP [dm6]	G	T	2.680e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25226091	3R_25226091_SNP [dm3] 3R_29400369_SNP [dm6]	C	T	2.681e^-4	0.811	INTRON Ptp99A
3R	26460327	3R_26460327_SNP [dm3] 3R_30634605_SNP [dm6]	G	A	2.688e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9127573	2L_9127573_SNP [dm3] 2L_9127573_SNP [dm6]	A	T	2.691e^-4	0.811	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	18771818	3R_18771818_SNP [dm3] 3R_22946096_SNP [dm6]	T	A	2.697e^-4	0.811	INTRON klg	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4507411	2R_4507411_SNP [dm3] 2R_8619906_SNP [dm6]	A	G	2.697e^-4	0.811	UTR_3_PRIME Cirl INTRON Cirl	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3R	25238138	3R_25238138_SNP [dm3] 3R_29412416_SNP [dm6]	T	C	2.697e^-4	0.811	INTRON Ptp99A
3L	22126212	3L_22126212_SNP [dm3] 3L_22133112_SNP [dm6]	G	T	2.698e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19662976	2R_19662976_SNP [dm3] 2R_23775453_SNP [dm6]	T	A	2.700e^-4	0.811	INTRON CG9850
3R	23447844	3R_23447844_SNP [dm3] 3R_27622122_SNP [dm6]	A	T	2.701e^-4	0.811	INTRON Tusp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6395315	2R_6395315_DEL [dm3] 2R_10507810_DEL [dm6]	TT	T	2.712e^-4	0.811	UTR_3_PRIME lola INTRON lola
3R	9532942	3R_9532942_SNP [dm3] 3R_13707220_SNP [dm6]	C	A	2.713e^-4	0.811	INTRON Adgf-C
3L	22929939	3L_22929939_SNP [dm3] 3L_22936839_SNP [dm6]	C	T	2.718e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26353243	3R_26353243_SNP [dm3] 3R_30527521_SNP [dm6]	T	A	2.730e^-4	0.811	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	21780906	3L_21780906_SNP [dm3] 3L_21787806_SNP [dm6]	C	A	2.734e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	26585536	3R_26585536_SNP [dm3] 3R_30759814_SNP [dm6]	G	A	2.738e^-4	0.811	INTERGENIC
2L	4416919	2L_4416919_SNP [dm3] 2L_4416919_SNP [dm6]	A	G	2.742e^-4	0.811	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	19618245	2R_19618245_SNP [dm3] 2R_23730722_SNP [dm6]	T	C	2.742e^-4	0.811	INTRON Sesn	TF binding site mE1_TFBS_chinmo
3L	22888702	3L_22888702_SNP [dm3] 3L_22895602_SNP [dm6]	A	G	2.746e^-4	0.811	UPSTREAM CR44688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22884919	3R_22884919_SNP [dm3] 3R_27059197_SNP [dm6]	T	A	2.749e^-4	0.811	INTRON Nep5
3R	15399518	3R_15399518_SNP [dm3] 3R_19573796_SNP [dm6]	C	T	2.752e^-4	0.811	INTRON Dys
3L	17698447	3L_17698447_SNP [dm3] 3L_17705347_SNP [dm6]	T	A	2.752e^-4	0.811	INTRON Ccn
2L	2929058	2L_2929058_SNP [dm3] 2L_2929058_SNP [dm6]	T	C	2.755e^-4	0.811	INTRON lilli
3L	6758605	3L_6758605_SNP [dm3] 3L_6765505_SNP [dm6]	T	C	2.758e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15087791	3R_15087791_SNP [dm3] 3R_19262069_SNP [dm6]	A	G	2.763e^-4	0.811	INTERGENIC
3L	15918656	3L_15918656_SNP [dm3] 3L_15925556_SNP [dm6]	A	G	2.765e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3663939	3L_3663939_SNP [dm3] 3L_3663939_SNP [dm6]	T	C	2.767e^-4	0.811	INTERGENIC
2R	7563074	2R_7563074_SNP [dm3] 2R_11675569_SNP [dm6]	G	A	2.777e^-4	0.811	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
2L	1087327	2L_1087327_SNP [dm3] 2L_1087327_SNP [dm6]	A	G	2.780e^-4	0.811	INTRON CG4629
2R	13988813	2R_13988813_SNP [dm3] 2R_18101308_SNP [dm6]	A	C	2.786e^-4	0.811	SYNONYMOUS_CODING CG5756 DOWNSTREAM CG5098	TF binding site mE1_TFBS_cad
2R	18741631	2R_18741631_INS [dm3] 2R_22854108_INS [dm6]	G	GAT	2.789e^-4	0.811	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9134050	3R_9134050_SNP [dm3] 3R_13308328_SNP [dm6]	A	C	2.790e^-4	0.811	INTRON CG32473
3R	16006783	3R_16006783_SNP [dm3] 3R_20181061_SNP [dm6]	C	T	2.791e^-4	0.811	INTERGENIC
3R	23947637	3R_23947637_SNP [dm3] 3R_28121915_SNP [dm6]	G	T	2.792e^-4	0.811	INTERGENIC
2R	18367135	2R_18367135_SNP [dm3] 2R_22479630_SNP [dm6]	C	T	2.797e^-4	0.811	INTRON CG4752
3R	19171086	3R_19171086_SNP [dm3] 3R_23345364_SNP [dm6]	G	T	2.802e^-4	0.811	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	12307334	2L_12307334_SNP [dm3] 2L_12307334_SNP [dm6]	A	T	2.804e^-4	0.811	INTRON aret
3R	24049625	3R_24049625_SNP [dm3] 3R_28223903_SNP [dm6]	T	C	2.807e^-4	0.811	INTRON CG34354
3R	16857218	3R_16857218_SNP [dm3] 3R_21031496_SNP [dm6]	T	C	2.813e^-4	0.811	SYNONYMOUS_CODING Dhc93AB
3R	15244307	3R_15244307_SNP [dm3] 3R_19418585_SNP [dm6]	A	T	2.819e^-4	0.811	INTRON CG31221
3R	22070392	3R_22070392_SNP [dm3] 3R_26244670_SNP [dm6]	T	G	2.821e^-4	0.811	INTRON CR42745
3R	18364159	3R_18364159_SNP [dm3] 3R_22538437_SNP [dm6]	T	G	2.822e^-4	0.811	INTRON CG5326
3L	2397470	3L_2397470_SNP [dm3] 3L_2397470_SNP [dm6]	T	A	2.825e^-4	0.811	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	21898823	2L_21898823_SNP [dm3] 2L_21898823_SNP [dm6]	T	G	2.836e^-4	0.811	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26352516	3R_26352516_SNP [dm3] 3R_30526794_SNP [dm6]	C	A	2.854e^-4	0.811	INTRON jdp
3L	20436529	3L_20436529_SNP [dm3] 3L_20443429_SNP [dm6]	C	A	2.860e^-4	0.811	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17700671	2L_17700671_SNP [dm3] 2L_17700671_SNP [dm6]	C	A	2.863e^-4	0.811	INTRON CadN
2R	10943729	2R_10943729_SNP [dm3] 2R_15056224_SNP [dm6]	C	A	2.865e^-4	0.811	SYNONYMOUS_CODING CG33467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11743807	2R_11743807_SNP [dm3] 2R_15856302_SNP [dm6]	C	T	2.869e^-4	0.811	DOWNSTREAM tun INTRON CG12970
2L	2131829	2L_2131829_SNP [dm3] 2L_2131829_SNP [dm6]	C	G	2.889e^-4	0.811	INTRON GlyP
3L	21060224	3L_21060224_INS [dm3] 3L_21067124_INS [dm6]	A	AT	2.897e^-4	0.811	UPSTREAM siz DOWNSTREAM CG43072 INTRON siz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	22313447	3R_22313447_SNP [dm3] 3R_26487725_SNP [dm6]	A	G	2.897e^-4	0.811	INTRON plum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26460218	3R_26460218_SNP [dm3] 3R_30634496_SNP [dm6]	C	T	2.910e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4705203	3R_4705203_DEL [dm3] 3R_8879481_DEL [dm6]	CGAGGCGTAGC...	G	2.910e^-4	0.811	INTRON pyd
2R	17023751	2R_17023751_SNP [dm3] 2R_21136246_SNP [dm6]	G	A	2.913e^-4	0.811	INTRON Magi	TF binding site mE1_TFBS_sens
3L	22127492	3L_22127492_SNP [dm3] 3L_22134392_SNP [dm6]	C	G	2.920e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_inv mE1_TFBS_Trl
3R	27061145	3R_27061145_SNP [dm3] 3R_31235423_SNP [dm6]	C	T	2.920e^-4	0.811	UPSTREAM CG15564 DOWNSTREAM qless INTERGENIC
3L	14577470	3L_14577470_SNP [dm3] 3L_14584370_SNP [dm6]	C	T	2.923e^-4	0.811	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	19618220	2R_19618220_INS [dm3] 2R_23730697_INS [dm6]	C	GG	2.931e^-4	0.811	INTRON Sesn
3R	13314055	3R_13314055_SNP [dm3] 3R_17488333_SNP [dm6]	C	A	2.931e^-4	0.811	INTRON Dscam3
3L	21671796	3L_21671796_SNP [dm3] 3L_21678696_SNP [dm6]	C	T	2.935e^-4	0.811	NON_SYNONYMOUS_CODING CG7158 EXON CR43979	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6743086	2R_6743086_SNP [dm3] 2R_10855581_SNP [dm6]	C	T	2.937e^-4	0.811	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	19124815	3R_19124815_SNP [dm3] 3R_23299093_SNP [dm6]	T	A	2.946e^-4	0.811	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6389995	2R_6389995_SNP [dm3] 2R_10502490_SNP [dm6]	T	G	2.954e^-4	0.811	INTRON lola
3R	17557213	3R_17557213_SNP [dm3] 3R_21731491_SNP [dm6]	G	T	2.954e^-4	0.811	INTERGENIC
2L	3794243	2L_3794243_SNP [dm3] 2L_3794243_SNP [dm6]	T	C	2.958e^-4	0.811	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
3L	13222026	3L_13222026_SNP [dm3] 3L_13228926_SNP [dm6]	C	T	2.963e^-4	0.811	START_GAINED caps UTR_5_PRIME caps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14176741	2L_14176741_SNP [dm3] 2L_14176741_SNP [dm6]	G	C	2.963e^-4	0.811	INTRON CG43333
2R	8898297	2R_8898297_SNP [dm3] 2R_13010792_SNP [dm6]	G	C	2.968e^-4	0.811	INTERGENIC
2L	3159757	2L_3159757_SNP [dm3] 2L_3159757_SNP [dm6]	A	T	2.969e^-4	0.811	UPSTREAM gkt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	12694758	3L_12694758_SNP [dm3] 3L_12701658_SNP [dm6]	C	T	2.969e^-4	0.811	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12818342	2R_12818342_SNP [dm3] 2R_16930837_SNP [dm6]	T	C	2.985e^-4	0.811	INTRON Pkc53E
2R	16495824	2R_16495824_SNP [dm3] 2R_20608319_SNP [dm6]	G	A	2.987e^-4	0.811	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5993856	3L_5993856_SNP [dm3] 3L_6000756_SNP [dm6]	A	G	2.990e^-4	0.811	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11147896	3L_11147896_DEL [dm3] 3L_11154796_DEL [dm6]	AACT	A	2.991e^-4	0.811	INTRON CG32082
2L	17700659	2L_17700659_SNP [dm3] 2L_17700659_SNP [dm6]	A	G	2.991e^-4	0.811	INTRON CadN
X	18813791	X_18813791_SNP [dm3] X_18919758_SNP [dm6]	A	T	2.999e^-4	0.811	INTERGENIC
3R	16940780	3R_16940780_SNP [dm3] 3R_21115058_SNP [dm6]	C	A	3.011e^-4	0.811	SYNONYMOUS_CODING Rab11
3L	15915903	3L_15915903_SNP [dm3] 3L_15922803_SNP [dm6]	T	G	3.012e^-4	0.811	INTRON sff
X	18413327	X_18413327_SNP [dm3] X_18519294_SNP [dm6]	G	T	3.016e^-4	0.811	INTRON Bx & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14976108	3R_14976108_INS [dm3] 3R_19150386_INS [dm6]	G	GTTAAGGTGATAAAGAGTCT...	3.017e^-4	0.811	DOWNSTREAM CR44107 INTRON CG5835
X	7224660	X_7224660_SNP [dm3] X_7330627_SNP [dm6]	A	T	3.018e^-4	0.811	SYNONYMOUS_CODING CG18155 DOWNSTREAM CG42780 INTRON CR44357 & 1 other	TF binding site mE1_TFBS_sens
3L	21677703	3L_21677703_SNP [dm3] 3L_21684603_SNP [dm6]	G	A	3.018e^-4	0.811	UPSTREAM Sfp78E EXON CR43978
3R	23719217	3R_23719217_SNP [dm3] 3R_27893495_SNP [dm6]	C	G	3.018e^-4	0.811	INTRON CG34353
2R	19875259	2R_19875259_SNP [dm3] 2R_23987736_SNP [dm6]	A	T	3.021e^-4	0.811	DOWNSTREAM CG30178 INTRON Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7100186	X_7100186_SNP [dm3] X_7206153_SNP [dm6]	T	A	3.023e^-4	0.811	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA
2L	6574708	2L_6574708_SNP [dm3] 2L_6574708_SNP [dm6]	G	A	3.029e^-4	0.811	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14619830	2L_14619830_SNP [dm3] 2L_14619830_SNP [dm6]	A	G	3.037e^-4	0.811	DOWNSTREAM Adhr & 1 other INTRON osp
2L	3776781	2L_3776781_SNP [dm3] 2L_3776781_SNP [dm6]	T	C	3.039e^-4	0.811	INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11343019	3L_11343019_SNP [dm3] 3L_11349919_SNP [dm6]	T	C	3.049e^-4	0.811	UPSTREAM CR45251 INTERGENIC
X	5134617	X_5134617_SNP [dm3] X_5240584_SNP [dm6]	G	C	3.052e^-4	0.811	INTRON CG15465 & 1 other
2R	6439490	2R_6439490_SNP [dm3] 2R_10551985_SNP [dm6]	C	T	3.057e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	20817246	X_20817246_SNP [dm3] X_20946219_SNP [dm6]	C	T	3.063e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4212936	2L_4212936_SNP [dm3] 2L_4212936_SNP [dm6]	G	A	3.067e^-4	0.811	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17001951	3R_17001951_SNP [dm3] 3R_21176229_SNP [dm6]	G	T	3.071e^-4	0.811	INTRON SNF4Agamma
X	15107460	X_15107460_SNP [dm3] X_15213427_SNP [dm6]	A	T	3.076e^-4	0.811	INTERGENIC
3L	2394211	3L_2394211_SNP [dm3] 3L_2394211_SNP [dm6]	G	A	3.077e^-4	0.811	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18004424	3L_18004424_SNP [dm3] 3L_18011324_SNP [dm6]	A	T	3.077e^-4	0.811	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18771794	3R_18771794_SNP [dm3] 3R_22946072_SNP [dm6]	A	G	3.077e^-4	0.811	INTRON klg	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7247940	3R_7247940_SNP [dm3] 3R_11422218_SNP [dm6]	T	G	3.079e^-4	0.811	UTR_5_PRIME CG5270 UPSTREAM ninaG	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22398841	3R_22398841_SNP [dm3] 3R_26573119_SNP [dm6]	T	G	3.084e^-4	0.811	INTRON scrib
2L	10534962	2L_10534962_SNP [dm3] 2L_10534962_SNP [dm6]	T	C	3.105e^-4	0.811	UTR_5_PRIME CG18302
2L	5904560	2L_5904560_SNP [dm3] 2L_5904560_SNP [dm6]	G	A	3.106e^-4	0.811	DOWNSTREAM CR43808 INTRON CG9021
X	17179129	X_17179129_SNP [dm3] X_17285096_SNP [dm6]	G	A	3.111e^-4	0.811	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	3794226	2L_3794226_SNP [dm3] 2L_3794226_SNP [dm6]	C	T	3.114e^-4	0.811	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
3R	22779410	3R_22779410_SNP [dm3] 3R_26953688_SNP [dm6]	G	C	3.114e^-4	0.811	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	3552839	3R_3552839_SNP [dm3] 3R_7727117_SNP [dm6]	G	A	3.115e^-4	0.811	INTERGENIC
3L	22149612	3L_22149612_SNP [dm3] 3L_22156512_SNP [dm6]	C	T	3.119e^-4	0.811	INTRON olf413	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8860676	3L_8860676_SNP [dm3] 3L_8867576_SNP [dm6]	C	G	3.136e^-4	0.811	INTRON dally
3R	16006780	3R_16006780_SNP [dm3] 3R_20181058_SNP [dm6]	T	G	3.139e^-4	0.811	INTERGENIC
3R	9456234	3R_9456234_SNP [dm3] 3R_13630512_SNP [dm6]	C	A	3.144e^-4	0.811	DOWNSTREAM CR45594 INTERGENIC
3L	3917309	3L_3917309_SNP [dm3] 3L_3917309_SNP [dm6]	A	T	3.145e^-4	0.811	INTRON Eip63F-1	TF binding site mE1_TFBS_cad
3R	16006696	3R_16006696_SNP [dm3] 3R_20180974_SNP [dm6]	T	C	3.148e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15775586	2L_15775586_SNP [dm3] 2L_15775586_SNP [dm6]	C	A	3.153e^-4	0.811	DOWNSTREAM CG43760 INTERGENIC
3L	1251718	3L_1251718_SNP [dm3] 3L_1251718_SNP [dm6]	G	T	3.154e^-4	0.811	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
3R	21956164	3R_21956164_SNP [dm3] 3R_26130442_SNP [dm6]	T	G	3.170e^-4	0.811	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
2L	8423989	2L_8423989_SNP [dm3] 2L_8423989_SNP [dm6]	G	C	3.172e^-4	0.811	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	6699796	2L_6699796_SNP [dm3] 2L_6699796_SNP [dm6]	A	G	3.177e^-4	0.811	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12083703	3L_12083703_SNP [dm3] 3L_12090603_SNP [dm6]	C	T	3.177e^-4	0.811	INTERGENIC
3R	21412710	3R_21412710_SNP [dm3] 3R_25586988_SNP [dm6]	C	T	3.180e^-4	0.811	INTRON msi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19547294	3R_19547294_SNP [dm3] 3R_23721572_SNP [dm6]	A	T	3.182e^-4	0.811	UTR_5_PRIME CG10232	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10349916	2L_10349916_SNP [dm3] 2L_10349916_SNP [dm6]	G	C	3.225e^-4	0.811	INTRON CG34367
3R	16006555	3R_16006555_SNP [dm3] 3R_20180833_SNP [dm6]	A	G	3.235e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4428898	2L_4428898_SNP [dm3] 2L_4428898_SNP [dm6]	G	A	3.242e^-4	0.811	INTRON CG15431
3L	21114871	3L_21114871_SNP [dm3] 3L_21121771_SNP [dm6]	G	A	3.264e^-4	0.811	UTR_5_PRIME CG43938 INTRON ko	TF binding site mE1_TFBS_cad
3R	23330122	3R_23330122_SNP [dm3] 3R_27504400_SNP [dm6]	G	T	3.264e^-4	0.811	INTERGENIC
2L	7104615	2L_7104615_SNP [dm3] 2L_7104615_SNP [dm6]	C	T	3.269e^-4	0.811	INTRON Pvf3
3R	21465861	3R_21465861_SNP [dm3] 3R_25640139_SNP [dm6]	T	C	3.271e^-4	0.811	INTRON jigr1
2R	17110411	2R_17110411_SNP [dm3] 2R_21222906_SNP [dm6]	A	T	3.272e^-4	0.811	INTRON ASPP	TF binding site mE1_TFBS_cad
2L	6554949	2L_6554949_SNP [dm3] 2L_6554949_SNP [dm6]	A	T	3.276e^-4	0.811	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10886108	3L_10886108_SNP [dm3] 3L_10893008_SNP [dm6]	A	T	3.279e^-4	0.811	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	4684122	3R_4684122_DEL [dm3] 3R_8858400_DEL [dm6]	TT	T	3.286e^-4	0.811	UPSTREAM pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3L	15914176	3L_15914176_SNP [dm3] 3L_15921076_SNP [dm6]	T	C	3.292e^-4	0.811	INTRON sff	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2L	5788025	2L_5788025_SNP [dm3] 2L_5788025_SNP [dm6]	A	T	3.293e^-4	0.811	INTRON CG9171
2L	5446278	2L_5446278_SNP [dm3] 2L_5446278_SNP [dm6]	C	G	3.293e^-4	0.811	INTERGENIC
3L	14198023	3L_14198023_SNP [dm3] 3L_14204923_SNP [dm6]	T	A	3.310e^-4	0.811	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12668003	2L_12668003_SNP [dm3] 2L_12668003_SNP [dm6]	G	A	3.319e^-4	0.811	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21465855	3R_21465855_SNP [dm3] 3R_25640133_SNP [dm6]	A	C	3.335e^-4	0.811	INTRON jigr1
3R	20883759	3R_20883759_SNP [dm3] 3R_25058037_SNP [dm6]	A	G	3.339e^-4	0.811	INTRON Unc-13-4B
3L	22671178	3L_22671178_SNP [dm3] 3L_22678078_SNP [dm6]	C	A	3.346e^-4	0.811	INTRON CG14457
2L	2683464	2L_2683464_SNP [dm3] 2L_2683464_SNP [dm6]	G	C	3.359e^-4	0.811	INTRON CG31690
3L	6389265	3L_6389265_SNP [dm3] 3L_6396165_SNP [dm6]	T	A	3.360e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14327261	3R_14327261_SNP [dm3] 3R_18501539_SNP [dm6]	G	A	3.366e^-4	0.811	INTRON fru	TF binding site BDTNP1_TFBS_da
3R	25185242	3R_25185242_SNP [dm3] 3R_29359520_SNP [dm6]	A	T	3.368e^-4	0.811	INTERGENIC
2R	8296164	2R_8296164_SNP [dm3] 2R_12408659_SNP [dm6]	G	C	3.376e^-4	0.811	UPSTREAM CG30050 DOWNSTREAM Cpr49Ag INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19618226	2R_19618226_SNP [dm3] 2R_23730703_SNP [dm6]	G	T	3.393e^-4	0.811	INTRON Sesn
3R	9621007	3R_9621007_SNP [dm3] 3R_13795285_SNP [dm6]	C	T	3.400e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7999478	2L_7999478_SNP [dm3] 2L_7999478_SNP [dm6]	C	T	3.404e^-4	0.811	SYNONYMOUS_CODING Sirup DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	21901836	3L_21901836_SNP [dm3] 3L_21908736_SNP [dm6]	A	T	3.405e^-4	0.811	INTRON mub
3R	19653864	3R_19653864_SNP [dm3] 3R_23828142_SNP [dm6]	G	A	3.407e^-4	0.811	DOWNSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	19196760	3R_19196760_SNP [dm3] 3R_23371038_SNP [dm6]	A	G	3.410e^-4	0.811	DOWNSTREAM CR44322 INTERGENIC
3R	24937871	3R_24937871_SNP [dm3] 3R_29112149_SNP [dm6]	G	C	3.412e^-4	0.811	SYNONYMOUS_CODING alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26353255	3R_26353255_SNP [dm3] 3R_30527533_SNP [dm6]	T	G	3.415e^-4	0.811	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	21412792	3R_21412792_SNP [dm3] 3R_25587070_SNP [dm6]	T	C	3.418e^-4	0.811	INTRON msi	TF binding site BDTNP1_TFBS_dl
3R	25758963	3R_25758963_SNP [dm3] 3R_29933241_SNP [dm6]	T	C	3.430e^-4	0.811	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15837171	2R_15837171_SNP [dm3] 2R_19949666_SNP [dm6]	T	A	3.439e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15918675	3L_15918675_SNP [dm3] 3L_15925575_SNP [dm6]	A	T	3.441e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10605580	3L_10605580_SNP [dm3] 3L_10612480_SNP [dm6]	A	G	3.449e^-4	0.811	INTERGENIC
2R	8188465	2R_8188465_SNP [dm3] 2R_12300960_SNP [dm6]	A	T	3.450e^-4	0.811	DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	22595818	3L_22595818_SNP [dm3] 3L_22602718_SNP [dm6]	A	T	3.452e^-4	0.811	INTRON CG14459
2L	4414842	2L_4414842_SNP [dm3] 2L_4414842_SNP [dm6]	C	A	3.456e^-4	0.811	INTRON CG15431
2R	18741642	2R_18741642_SNP [dm3] 2R_22854119_SNP [dm6]	G	C	3.460e^-4	0.811	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11485169	3R_11485169_SNP [dm3] 3R_15659447_SNP [dm6]	T	C	3.466e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11941883	2R_11941883_SNP [dm3] 2R_16054378_SNP [dm6]	G	T	3.476e^-4	0.811	INTRON CG8405
2L	17703936	2L_17703936_SNP [dm3] 2L_17703936_SNP [dm6]	A	T	3.478e^-4	0.811	UPSTREAM CG43231 INTRON CadN
2L	17703941	2L_17703941_SNP [dm3] 2L_17703941_SNP [dm6]	C	T	3.478e^-4	0.811	UPSTREAM CG43231 INTRON CadN
2L	14255720	2L_14255720_SNP [dm3] 2L_14255720_SNP [dm6]	T	C	3.481e^-4	0.811	INTERGENIC
X	5819250	X_5819250_SNP [dm3] X_5925217_SNP [dm6]	T	C	3.482e^-4	0.811	INTRON CG3726
3R	5699373	3R_5699373_SNP [dm3] 3R_9873651_SNP [dm6]	G	C	3.493e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18889233	3L_18889233_SNP [dm3] 3L_18896133_SNP [dm6]	A	G	3.498e^-4	0.811	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site mE1_TFBS_cad
2R	15673393	2R_15673393_SNP [dm3] 2R_19785888_SNP [dm6]	A	T	3.505e^-4	0.811	EXON CR45231	regulatory region REDfly_CRMs
3L	10795422	3L_10795422_INS [dm3] 3L_10802322_INS [dm6]	G	GG	3.510e^-4	0.811	UTR_3_PRIME CG12523 DOWNSTREAM CG12523
3L	9623813	3L_9623813_SNP [dm3] 3L_9630713_SNP [dm6]	T	C	3.519e^-4	0.811	INTRON CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16561897	2R_16561897_SNP [dm3] 2R_20674392_SNP [dm6]	T	C	3.520e^-4	0.811	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15399577	3R_15399577_SNP [dm3] 3R_19573855_SNP [dm6]	G	A	3.521e^-4	0.811	INTRON Dys
X	4341061	X_4341061_SNP [dm3] X_4447028_SNP [dm6]	G	A	3.522e^-4	0.811	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4082657	3L_4082657_SNP [dm3] 3L_4082657_SNP [dm6]	T	C	3.522e^-4	0.811	INTRON Gad1
3L	12334043	3L_12334043_SNP [dm3] 3L_12340943_SNP [dm6]	G	A	3.522e^-4	0.811	INTRON CrzR
3R	26352208	3R_26352208_SNP [dm3] 3R_30526486_SNP [dm6]	A	G	3.525e^-4	0.811	INTRON jdp
2L	15775524	2L_15775524_SNP [dm3] 2L_15775524_SNP [dm6]	T	G	3.527e^-4	0.811	DOWNSTREAM CG43760 INTERGENIC
3R	22405356	3R_22405356_SNP [dm3] 3R_26579634_SNP [dm6]	T	C	3.529e^-4	0.811	INTRON scrib	TF binding site mE1_TFBS_cad
3L	22088109	3L_22088109_SNP [dm3] 3L_22095009_SNP [dm6]	T	C	3.536e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4414841	2L_4414841_SNP [dm3] 2L_4414841_SNP [dm6]	C	G	3.560e^-4	0.811	INTRON CG15431
2R	19618239	2R_19618239_SNP [dm3] 2R_23730716_SNP [dm6]	T	A	3.564e^-4	0.811	INTRON Sesn
3R	22255267	3R_22255267_SNP [dm3] 3R_26429545_SNP [dm6]	G	C	3.567e^-4	0.811	DOWNSTREAM CR43434 INTERGENIC
3L	22145652	3L_22145652_SNP [dm3] 3L_22152552_SNP [dm6]	G	T	3.588e^-4	0.811	INTRON olf413
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	3.589e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1253249	3L_1253249_DEL [dm3] 3L_1253249_DEL [dm6]	ATCA	A	3.593e^-4	0.811	UPSTREAM CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5064467	2L_5064467_SNP [dm3] 2L_5064467_SNP [dm6]	G	T	3.593e^-4	0.811	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4220029	2L_4220029_SNP [dm3] 2L_4220029_SNP [dm6]	A	G	3.595e^-4	0.811	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	21443873	3L_21443873_SNP [dm3] 3L_21450773_SNP [dm6]	C	T	3.596e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19430986	3R_19430986_SNP [dm3] 3R_23605264_SNP [dm6]	G	C	3.597e^-4	0.811	DOWNSTREAM CG31145 INTRON CG10184	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19560940	3R_19560940_SNP [dm3] 3R_23735218_SNP [dm6]	T	C	3.604e^-4	0.811	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5686034	3L_5686034_INS [dm3] 3L_5692934_INS [dm6]	G	GCAG	3.604e^-4	0.811	INTRON sif
2R	8898285	2R_8898285_SNP [dm3] 2R_13010780_SNP [dm6]	T	C	3.605e^-4	0.811	INTERGENIC
3R	23632347	3R_23632347_SNP [dm3] 3R_27806625_SNP [dm6]	T	C	3.606e^-4	0.811	INTRON CG34353
3R	16937461	3R_16937461_SNP [dm3] 3R_21111739_SNP [dm6]	C	T	3.613e^-4	0.811	UTR_5_PRIME Rab11 DOWNSTREAM rtet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16057756	3L_16057756_SNP [dm3] 3L_16064656_SNP [dm6]	G	A	3.616e^-4	0.811	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sbb
2R	6148540	2R_6148540_SNP [dm3] 2R_10261035_SNP [dm6]	G	A	3.620e^-4	0.811	NON_SYNONYMOUS_CODING CG12911 UTR_3_PRIME CG12911 DOWNSTREAM CR30009
3R	22987040	3R_22987040_SNP [dm3] 3R_27161318_SNP [dm6]	C	T	3.625e^-4	0.811	UTR_5_PRIME CG5909
3L	13377506	3L_13377506_SNP [dm3] 3L_13384406_SNP [dm6]	G	T	3.633e^-4	0.811	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	20965323	2L_20965323_SNP [dm3] 2L_20965323_SNP [dm6]	T	G	3.635e^-4	0.811	DOWNSTREAM CG42238 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13851909	2L_13851909_SNP [dm3] 2L_13851909_SNP [dm6]	C	T	3.636e^-4	0.811	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19126641	2R_19126641_SNP [dm3] 2R_23239118_SNP [dm6]	C	A	3.639e^-4	0.811	INTERGENIC
3R	26455595	3R_26455595_SNP [dm3] 3R_30629873_SNP [dm6]	A	G	3.641e^-4	0.811	UPSTREAM CG2267 INTERGENIC
3R	26353256	3R_26353256_SNP [dm3] 3R_30527534_SNP [dm6]	C	A	3.643e^-4	0.811	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	4710738	3R_4710738_SNP [dm3] 3R_8885016_SNP [dm6]	T	G	3.644e^-4	0.811	INTRON pyd
3R	24237872	3R_24237872_SNP [dm3] 3R_28412150_SNP [dm6]	C	A	3.647e^-4	0.811	INTERGENIC
3L	3634977	3L_3634977_SNP [dm3] 3L_3634977_SNP [dm6]	C	T	3.653e^-4	0.811	INTRON dar1
3R	19503221	3R_19503221_SNP [dm3] 3R_23677499_SNP [dm6]	G	C	3.675e^-4	0.811	SYNONYMOUS_CODING CG13822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6574728	2L_6574728_SNP [dm3] 2L_6574728_SNP [dm6]	G	A	3.676e^-4	0.811	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11613167	3R_11613167_SNP [dm3] 3R_15787445_SNP [dm6]	C	A	3.676e^-4	0.811	NON_SYNONYMOUS_CODING CG9590	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26353280	3R_26353280_DEL [dm3] 3R_30527558_DEL [dm6]	AAA	A	3.676e^-4	0.811	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	4764527	3R_4764527_SNP [dm3] 3R_8938805_SNP [dm6]	C	T	3.677e^-4	0.811	START_GAINED skap UTR_5_PRIME skap DOWNSTREAM osk INTRON skap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2L	12149265	2L_12149265_SNP [dm3] 2L_12149265_SNP [dm6]	T	G	3.690e^-4	0.811	INTRON CG31760
X	2985850	X_2985850_SNP [dm3] X_3091817_SNP [dm6]	T	G	3.690e^-4	0.811	INTRON kirre	regulatory region REDfly_CRMs
3R	5887156	3R_5887156_SNP [dm3] 3R_10061434_SNP [dm6]	A	G	3.691e^-4	0.811	UPSTREAM CR33629 DOWNSTREAM Npc2c EXON CR45205
3R	18234852	3R_18234852_SNP [dm3] 3R_22409130_SNP [dm6]	C	T	3.700e^-4	0.811	SYNONYMOUS_CODING CG13850 DOWNSTREAM CG13855
3R	21933974	3R_21933974_SNP [dm3] 3R_26108252_SNP [dm6]	G	T	3.700e^-4	0.811	UTR_5_PRIME CG31324 INTRON CG31324
2L	8718815	2L_8718815_SNP [dm3] 2L_8718815_SNP [dm6]	T	C	3.710e^-4	0.811	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21931846	3R_21931846_SNP [dm3] 3R_26106124_SNP [dm6]	C	T	3.712e^-4	0.811	UPSTREAM CG31324 INTERGENIC
2L	4416217	2L_4416217_SNP [dm3] 2L_4416217_SNP [dm6]	G	A	3.713e^-4	0.811	INTRON CG15431
3R	15447768	3R_15447768_SNP [dm3] 3R_19622046_SNP [dm6]	G	A	3.717e^-4	0.811	UPSTREAM CG6231 INTRON CG6231
X	9235879	X_9235879_SNP [dm3] X_9341846_SNP [dm6]	G	A	3.719e^-4	0.811	INTRON CG34449
2L	3781612	2L_3781612_SNP [dm3] 2L_3781612_SNP [dm6]	T	G	3.720e^-4	0.811	INTRON bowl
2R	11735765	2R_11735765_SNP [dm3] 2R_15848260_SNP [dm6]	A	T	3.724e^-4	0.811	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3R	26352773	3R_26352773_SNP [dm3] 3R_30527051_SNP [dm6]	T	A	3.730e^-4	0.811	UPSTREAM jdp INTERGENIC
2L	8717805	2L_8717805_SNP [dm3] 2L_8717805_SNP [dm6]	A	G	3.740e^-4	0.811	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11003640	3L_11003640_SNP [dm3] 3L_11010540_SNP [dm6]	C	T	3.741e^-4	0.811	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	18412596	X_18412596_DEL [dm3] X_18518563_DEL [dm6]	AGAAGCCTACA...	A	3.744e^-4	0.811	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
X	18813550	X_18813550_DEL [dm3] X_18919517_DEL [dm6]	AG	A	3.746e^-4	0.811	INTERGENIC
X	18813557	X_18813557_SNP [dm3] X_18919524_SNP [dm6]	A	T	3.746e^-4	0.811	INTERGENIC
3L	17934578	3L_17934578_SNP [dm3] 3L_17941478_SNP [dm6]	C	T	3.746e^-4	0.811	INTRON CG43174	TF binding site mE1_TFBS_HSA
2L	14181645	2L_14181645_SNP [dm3] 2L_14181645_SNP [dm6]	G	A	3.749e^-4	0.811	UPSTREAM CG43333 INTERGENIC
3R	23499880	3R_23499880_SNP [dm3] 3R_27674158_SNP [dm6]	C	T	3.749e^-4	0.811	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
2R	11735760	2R_11735760_SNP [dm3] 2R_15848255_SNP [dm6]	G	A	3.750e^-4	0.811	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2L	6510593	2L_6510593_SNP [dm3] 2L_6510593_SNP [dm6]	A	G	3.752e^-4	0.811	INTRON CG31637
3L	8627850	3L_8627850_SNP [dm3] 3L_8634750_SNP [dm6]	C	T	3.754e^-4	0.811	SYNONYMOUS_CODING Zasp66 UPSTREAM Cdc6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19388570	3R_19388570_SNP [dm3] 3R_23562848_SNP [dm6]	C	A	3.754e^-4	0.811	INTRON beat-IV	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	13295485	3L_13295485_SNP [dm3] 3L_13302385_SNP [dm6]	C	T	3.755e^-4	0.811	UPSTREAM CR43911 & 1 other DOWNSTREAM CR44557 & 1 other INTERGENIC
2L	14042128	2L_14042128_SNP [dm3] 2L_14042128_SNP [dm6]	A	T	3.760e^-4	0.811	UTR_5_PRIME nAChRalpha5	TF binding site BDTNP1_TFBS_dl
2L	9127554	2L_9127554_DEL [dm3] 2L_9127554_DEL [dm6]	TTTTT	AAAA	3.763e^-4	0.811	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	13260530	3L_13260530_SNP [dm3] 3L_13267430_SNP [dm6]	G	T	3.770e^-4	0.811	INTRON caps	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26352212	3R_26352212_SNP [dm3] 3R_30526490_SNP [dm6]	C	T	3.788e^-4	0.811	INTRON jdp
2R	16558120	2R_16558120_SNP [dm3] 2R_20670615_SNP [dm6]	T	A	3.790e^-4	0.811	UPSTREAM CG30152 & 1 other INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
X	5117672	X_5117672_SNP [dm3] X_5223639_SNP [dm6]	A	G	3.791e^-4	0.811	INTRON CG15465 & 1 other
3L	11312737	3L_11312737_SNP [dm3] 3L_11319637_SNP [dm6]	A	G	3.793e^-4	0.811	DOWNSTREAM CG6168 INTERGENIC
3L	18953422	3L_18953422_SNP [dm3] 3L_18960322_SNP [dm6]	C	T	3.800e^-4	0.811	INTERGENIC
3L	1196839	3L_1196839_SNP [dm3] 3L_1196839_SNP [dm6]	G	T	3.807e^-4	0.811	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18363116	2R_18363116_SNP [dm3] 2R_22475611_SNP [dm6]	C	A	3.808e^-4	0.811	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
2L	4276266	2L_4276266_SNP [dm3] 2L_4276266_SNP [dm6]	T	A	3.820e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19618217	2R_19618217_SNP [dm3] 2R_23730694_SNP [dm6]	C	G	3.822e^-4	0.811	INTRON Sesn
3L	12957797	3L_12957797_SNP [dm3] 3L_12964697_SNP [dm6]	T	A	3.825e^-4	0.811	INTRON Or69a
2R	9681646	2R_9681646_SNP [dm3] 2R_13794141_SNP [dm6]	A	G	3.829e^-4	0.811	UPSTREAM Cpr50Cb INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1251688	3L_1251688_SNP [dm3] 3L_1251688_SNP [dm6]	A	G	3.842e^-4	0.811	UTR_3_PRIME CG9129 UPSTREAM CG9130 & 1 other	TF binding site mE1_TFBS_cad
3R	21588971	3R_21588971_DEL [dm3] 3R_25763249_DEL [dm6]	AAAAAAAC	A	3.844e^-4	0.811	UPSTREAM LpR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8718954	2L_8718954_SNP [dm3] 2L_8718954_SNP [dm6]	T	A	3.850e^-4	0.811	INTRON raw	TF binding site mE1_TFBS_Trl
2R	11736014	2R_11736014_SNP [dm3] 2R_15848509_SNP [dm6]	G	T	3.850e^-4	0.811	SPLICE_SITE_ACCEPTOR tun UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
2L	17677218	2L_17677218_SNP [dm3] 2L_17677218_SNP [dm6]	G	C	3.855e^-4	0.811	INTRON CadN
3R	15399550	3R_15399550_SNP [dm3] 3R_19573828_SNP [dm6]	T	C	3.857e^-4	0.811	INTRON Dys
2L	15184259	2L_15184259_SNP [dm3] 2L_15184259_SNP [dm6]	C	T	3.887e^-4	0.811	INTRON CG4168
3R	23570611	3R_23570611_SNP [dm3] 3R_27744889_SNP [dm6]	G	A	3.890e^-4	0.811	INTRON Ets98B
3R	16006797	3R_16006797_SNP [dm3] 3R_20181075_SNP [dm6]	A	G	3.890e^-4	0.811	INTERGENIC
3R	15830014	3R_15830014_SNP [dm3] 3R_20004292_SNP [dm6]	C	A	3.890e^-4	0.811	INTRON Hs6st
3R	16720896	3R_16720896_SNP [dm3] 3R_20895174_SNP [dm6]	A	T	3.893e^-4	0.811	UTR_3_PRIME CG10830
3R	9554361	3R_9554361_SNP [dm3] 3R_13728639_SNP [dm6]	C	T	3.894e^-4	0.811	INTRON CG34383
2L	15773069	2L_15773069_SNP [dm3] 2L_15773069_SNP [dm6]	G	T	3.894e^-4	0.811	UTR_5_PRIME CG31826 UPSTREAM CG31826
3R	18772008	3R_18772008_SNP [dm3] 3R_22946286_SNP [dm6]	G	C	3.899e^-4	0.811	INTRON klg
3L	15918353	3L_15918353_DEL [dm3] 3L_15925253_DEL [dm6]	AATA	A	3.906e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21358454	3R_21358454_SNP [dm3] 3R_25532732_SNP [dm6]	T	G	3.910e^-4	0.811	INTRON msi
3R	16493265	3R_16493265_SNP [dm3] 3R_20667543_SNP [dm6]	T	C	3.913e^-4	0.811	INTERGENIC
3L	15918515	3L_15918515_SNP [dm3] 3L_15925415_SNP [dm6]	G	A	3.914e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11609795	2L_11609795_SNP [dm3] 2L_11609795_SNP [dm6]	A	G	3.921e^-4	0.811	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3R	23362307	3R_23362307_SNP [dm3] 3R_27536585_SNP [dm6]	T	A	3.923e^-4	0.811	EXON CR44289
3R	16493247	3R_16493247_SNP [dm3] 3R_20667525_SNP [dm6]	T	A	3.926e^-4	0.811	INTERGENIC
X	9235757	X_9235757_SNP [dm3] X_9341724_SNP [dm6]	G	T	3.934e^-4	0.811	INTRON CG34449
3R	22777682	3R_22777682_SNP [dm3] 3R_26951960_SNP [dm6]	G	A	3.935e^-4	0.811	INTRON CG6330
3L	10886031	3L_10886031_SNP [dm3] 3L_10892931_SNP [dm6]	G	A	3.939e^-4	0.811	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	6814114	2L_6814114_SNP [dm3] 2L_6814114_SNP [dm6]	T	C	3.944e^-4	0.811	INTERGENIC
3R	26585842	3R_26585842_SNP [dm3] 3R_30760120_SNP [dm6]	A	G	3.947e^-4	0.811	INTERGENIC
2R	9758773	2R_9758773_SNP [dm3] 2R_13871268_SNP [dm6]	A	G	3.967e^-4	0.811	INTRON shot
2L	6589656	2L_6589656_SNP [dm3] 2L_6589656_SNP [dm6]	C	A	3.968e^-4	0.811	INTRON CG11319
3R	26118548	3R_26118548_SNP [dm3] 3R_30292826_SNP [dm6]	A	T	3.968e^-4	0.811	INTRON hdc
2R	16490325	2R_16490325_INS [dm3] 2R_20602820_INS [dm6]	T	TT	3.974e^-4	0.811	UPSTREAM bl INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26456423	3R_26456423_SNP [dm3] 3R_30630701_SNP [dm6]	C	T	3.981e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15155122	2R_15155122_SNP [dm3] 2R_19267617_SNP [dm6]	A	G	3.986e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13624912	3L_13624912_SNP [dm3] 3L_13631812_SNP [dm6]	A	G	3.992e^-4	0.811	INTRON bru-3
2L	1031941	2L_1031941_SNP [dm3] 2L_1031941_SNP [dm6]	G	T	3.995e^-4	0.811	INTRON IA-2
X	21890117	X_21890117_SNP [dm3] X_22488281_SNP [dm6]	A	T	3.996e^-4	0.811	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12083690	3L_12083690_SNP [dm3] 3L_12090590_SNP [dm6]	C	T	3.998e^-4	0.811	INTERGENIC
2R	16555158	2R_16555158_SNP [dm3] 2R_20667653_SNP [dm6]	T	G	3.998e^-4	0.811	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11318881	3L_11318881_SNP [dm3] 3L_11325781_SNP [dm6]	T	C	4.000e^-4	0.811	UPSTREAM CR44723 INTERGENIC
2R	17783943	2R_17783943_SNP [dm3] 2R_21896438_SNP [dm6]	T	C	4.002e^-4	0.811	INTRON Fili	TF binding site BDTNP1_TFBS_twi
3R	17816844	3R_17816844_SNP [dm3] 3R_21991122_SNP [dm6]	G	A	4.004e^-4	0.811	INTRON Eip93F
X	13486943	X_13486943_SNP [dm3] X_13592910_SNP [dm6]	G	A	4.015e^-4	0.811	UTR_3_PRIME Tango13 DOWNSTREAM up
2R	16439927	2R_16439927_SNP [dm3] 2R_20552422_SNP [dm6]	A	C	4.015e^-4	0.811	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	1794958	2L_1794958_SNP [dm3] 2L_1794958_SNP [dm6]	A	G	4.019e^-4	0.811	UPSTREAM Gr22a INTERGENIC
2R	18363290	2R_18363290_SNP [dm3] 2R_22475785_SNP [dm6]	C	T	4.025e^-4	0.811	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
2R	9793010	2R_9793010_SNP [dm3] 2R_13905505_SNP [dm6]	A	T	4.025e^-4	0.811	SPLICE_SITE_REGION shot INTRON shot
X	18813559	X_18813559_SNP [dm3] X_18919526_SNP [dm6]	A	G	4.031e^-4	0.811	INTERGENIC
2L	4409700	2L_4409700_SNP [dm3] 2L_4409700_SNP [dm6]	T	C	4.032e^-4	0.811	INTRON CG15431
2R	18367064	2R_18367064_SNP [dm3] 2R_22479559_SNP [dm6]	G	T	4.033e^-4	0.811	INTRON CG4752
2L	17673670	2L_17673670_SNP [dm3] 2L_17673670_SNP [dm6]	T	A	4.037e^-4	0.811	INTRON CadN
3L	2506378	3L_2506378_SNP [dm3] 3L_2506378_SNP [dm6]	C	T	4.038e^-4	0.811	UTR_3_PRIME Spn DOWNSTREAM Spn
2L	6585549	2L_6585549_SNP [dm3] 2L_6585549_SNP [dm6]	T	G	4.045e^-4	0.811	INTRON CG11319
2R	18361075	2R_18361075_SNP [dm3] 2R_22473570_SNP [dm6]	C	T	4.045e^-4	0.811	DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15918497	3L_15918497_SNP [dm3] 3L_15925397_SNP [dm6]	T	G	4.045e^-4	0.811	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21688431	3R_21688431_SNP [dm3] 3R_25862709_SNP [dm6]	C	A	4.050e^-4	0.811	INTRON CG5890
3L	3518696	3L_3518696_SNP [dm3] 3L_3518696_SNP [dm6]	C	A	4.054e^-4	0.811	INTRON Eip63E
3L	1250791	3L_1250791_SNP [dm3] 3L_1250791_SNP [dm6]	A	G	4.054e^-4	0.811	UTR_5_PRIME CG9129 DOWNSTREAM Sac1
3L	7257111	3L_7257111_SNP [dm3] 3L_7264011_SNP [dm6]	C	T	4.060e^-4	0.811	UPSTREAM CG14830 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6814043	2L_6814043_SNP [dm3] 2L_6814043_SNP [dm6]	G	T	4.063e^-4	0.811	DOWNSTREAM CR44081 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18006226	3L_18006226_SNP [dm3] 3L_18013126_SNP [dm6]	G	C	4.069e^-4	0.811	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8853836	3L_8853836_SNP [dm3] 3L_8860736_SNP [dm6]	T	C	4.070e^-4	0.811	INTRON dally
2L	15807256	2L_15807256_SNP [dm3] 2L_15807256_SNP [dm6]	C	A	4.071e^-4	0.811	EXON CR44602
3L	8731623	3L_8731623_SNP [dm3] 3L_8738523_SNP [dm6]	C	A	4.084e^-4	0.811	INTRON Prm
3L	10651208	3L_10651208_SNP [dm3] 3L_10658108_SNP [dm6]	A	G	4.086e^-4	0.811	INTRON CG32066	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
3R	19388994	3R_19388994_SNP [dm3] 3R_23563272_SNP [dm6]	T	A	4.089e^-4	0.811	INTRON beat-IV
X	16429078	X_16429078_INS [dm3] X_16535045_INS [dm6]	A	ACCACATTTGA...	4.094e^-4	0.811	INTERGENIC
2L	3822634	2L_3822634_SNP [dm3] 2L_3822634_SNP [dm6]	A	T	4.096e^-4	0.811	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	21931814	3R_21931814_SNP [dm3] 3R_26106092_SNP [dm6]	T	A	4.099e^-4	0.811	UPSTREAM CG31324 INTERGENIC
2L	19268417	2L_19268417_SNP [dm3] 2L_19268417_SNP [dm6]	C	G	4.101e^-4	0.811	DOWNSTREAM CR44190 INTERGENIC
3L	20748289	3L_20748289_SNP [dm3] 3L_20755189_SNP [dm6]	A	G	4.106e^-4	0.811	INTRON CG33912	TF binding site mE1_TFBS_inv
3R	12589755	3R_12589755_SNP [dm3] 3R_16764033_SNP [dm6]	A	G	4.107e^-4	0.811	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3451309	2L_3451309_SNP [dm3] 2L_3451309_SNP [dm6]	A	C	4.108e^-4	0.811	SPLICE_SITE_REGION Snx1 SYNONYMOUS_CODING Snx1	TF binding site mE1_TFBS_cad
3R	26897586	3R_26897586_SNP [dm3] 3R_31071864_SNP [dm6]	A	G	4.116e^-4	0.811	INTRON Sox100B
2L	8361192	2L_8361192_SNP [dm3] 2L_8361192_SNP [dm6]	A	T	4.116e^-4	0.811	UTR_5_PRIME CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12681404	2L_12681404_SNP [dm3] 2L_12681404_SNP [dm6]	A	G	4.123e^-4	0.811	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	722404	2L_722404_SNP [dm3] 2L_722404_SNP [dm6]	A	G	4.124e^-4	0.811	INTERGENIC
3R	14724322	3R_14724322_SNP [dm3] 3R_18898600_SNP [dm6]	A	T	4.126e^-4	0.811	UPSTREAM Rh2 INTRON CG14297
2L	6574002	2L_6574002_SNP [dm3] 2L_6574002_SNP [dm6]	C	T	4.137e^-4	0.811	INTRON CG11319
2L	14513460	2L_14513460_SNP [dm3] 2L_14513460_SNP [dm6]	C	T	4.138e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	18009016	3L_18009016_SNP [dm3] 3L_18015916_SNP [dm6]	G	A	4.141e^-4	0.811	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16006608	3R_16006608_SNP [dm3] 3R_20180886_SNP [dm6]	T	A	4.152e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	5117679	X_5117679_INS [dm3] X_5223646_INS [dm6]	A	AATGGAATGTG...	4.153e^-4	0.811	INTRON CG15465 & 1 other
2L	14181644	2L_14181644_SNP [dm3] 2L_14181644_SNP [dm6]	C	T	4.168e^-4	0.811	UPSTREAM CG43333 INTERGENIC
3R	16938658	3R_16938658_SNP [dm3] 3R_21112936_SNP [dm6]	G	T	4.175e^-4	0.811	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13628921	2L_13628921_MNP [dm3] 2L_13628921_MNP [dm6]	TGG	CCA	4.182e^-4	0.811	INTRON kuz
2L	6517638	2L_6517638_SNP [dm3] 2L_6517638_SNP [dm6]	C	T	4.183e^-4	0.811	INTRON CG31637
2L	4427795	2L_4427795_SNP [dm3] 2L_4427795_SNP [dm6]	A	G	4.195e^-4	0.811	INTRON CG15431
3L	9623838	3L_9623838_SNP [dm3] 3L_9630738_SNP [dm6]	G	T	4.199e^-4	0.811	INTRON CG8336	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16159533	3R_16159533_SNP [dm3] 3R_20333811_SNP [dm6]	A	T	4.214e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	15399396	3R_15399396_SNP [dm3] 3R_19573674_SNP [dm6]	A	T	4.214e^-4	0.811	INTRON Dys
2L	17698272	2L_17698272_SNP [dm3] 2L_17698272_SNP [dm6]	T	G	4.216e^-4	0.811	INTRON CadN
3L	12399910	3L_12399910_SNP [dm3] 3L_12406810_SNP [dm6]	A	C	4.217e^-4	0.811	INTRON CG32103
X	18813717	X_18813717_SNP [dm3] X_18919684_SNP [dm6]	G	A	4.229e^-4	0.811	INTERGENIC
3L	9422306	3L_9422306_SNP [dm3] 3L_9429206_SNP [dm6]	A	G	4.229e^-4	0.811	SYNONYMOUS_CODING RpS17 DOWNSTREAM snoRNA:Psi28S-612 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	20885855	3L_20885855_SNP [dm3] 3L_20892755_SNP [dm6]	A	G	4.230e^-4	0.811	INTERGENIC
3L	9949257	3L_9949257_SNP [dm3] 3L_9956157_SNP [dm6]	G	A	4.231e^-4	0.811	INTRON CG34356
2L	102328	2L_102328_SNP [dm3] 2L_102328_SNP [dm6]	C	T	4.234e^-4	0.811	UPSTREAM CG11377 DOWNSTREAM Zir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	3673043	2L_3673043_SNP [dm3] 2L_3673043_SNP [dm6]	G	A	4.235e^-4	0.811	INTRON CG34340
3L	13295376	3L_13295376_SNP [dm3] 3L_13302276_SNP [dm6]	T	A	4.238e^-4	0.811	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
2R	19058884	2R_19058884_SNP [dm3] 2R_23171361_SNP [dm6]	T	G	4.238e^-4	0.811	INTRON CG34371
X	9780540	X_9780540_SNP [dm3] X_9886507_SNP [dm6]	G	A	4.240e^-4	0.811	INTERGENIC
3R	18188402	3R_18188402_SNP [dm3] 3R_22362680_SNP [dm6]	A	C	4.248e^-4	0.811	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20980728	3R_20980728_SNP [dm3] 3R_25155006_SNP [dm6]	C	T	4.250e^-4	0.811	INTERGENIC
2R	9346594	2R_9346594_SNP [dm3] 2R_13459089_SNP [dm6]	T	C	4.250e^-4	0.811	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1256888	3L_1256888_SNP [dm3] 3L_1256888_SNP [dm6]	A	G	4.252e^-4	0.811	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
3R	10040195	3R_10040195_SNP [dm3] 3R_14214473_SNP [dm6]	A	G	4.262e^-4	0.811	UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
3R	19435326	3R_19435326_SNP [dm3] 3R_23609604_SNP [dm6]	A	G	4.265e^-4	0.811	INTRON CG31145
3L	7221727	3L_7221727_SNP [dm3] 3L_7228627_SNP [dm6]	A	C	4.268e^-4	0.811	INTERGENIC
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	4.279e^-4	0.811	INTERGENIC
3R	14137057	3R_14137057_DEL [dm3] 3R_18311335_DEL [dm6]	CAC	C	4.280e^-4	0.811	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13192742	3L_13192742_SNP [dm3] 3L_13199642_SNP [dm6]	A	G	4.280e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	16062137	3L_16062137_INS [dm3] 3L_16069037_INS [dm6]	T	TAT	4.282e^-4	0.811	INTRON Mbs	TF binding site mE1_TFBS_cad
3L	10605584	3L_10605584_DEL [dm3] 3L_10612484_DEL [dm6]	TTA	T	4.286e^-4	0.811	INTERGENIC
2R	8478116	2R_8478116_SNP [dm3] 2R_12590611_SNP [dm6]	C	T	4.289e^-4	0.811	INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17544859	3R_17544859_SNP [dm3] 3R_21719137_SNP [dm6]	A	T	4.293e^-4	0.811	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3954721	2L_3954721_SNP [dm3] 2L_3954721_SNP [dm6]	A	G	4.295e^-4	0.811	INTRON fred
3L	13772735	3L_13772735_SNP [dm3] 3L_13779635_SNP [dm6]	C	A	4.295e^-4	0.811	INTRON bru-3
2R	8898286	2R_8898286_SNP [dm3] 2R_13010781_SNP [dm6]	C	A	4.296e^-4	0.811	INTERGENIC
3L	11470986	3L_11470986_SNP [dm3] 3L_11477886_SNP [dm6]	C	T	4.299e^-4	0.811	INTERGENIC
3R	19125063	3R_19125063_SNP [dm3] 3R_23299341_SNP [dm6]	A	G	4.308e^-4	0.811	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21931783	3R_21931783_SNP [dm3] 3R_26106061_SNP [dm6]	T	C	4.315e^-4	0.811	UPSTREAM CG31324 INTERGENIC
3L	22126235	3L_22126235_SNP [dm3] 3L_22133135_SNP [dm6]	C	T	4.318e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9185636	3R_9185636_SNP [dm3] 3R_13359914_SNP [dm6]	T	A	4.323e^-4	0.811	INTERGENIC
2R	2403788	2R_2403788_SNP [dm3] 2R_6516283_SNP [dm6]	A	T	4.324e^-4	0.811	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	21439152	3L_21439152_INS [dm3] 3L_21446052_INS [dm6]	A	AACAAATT	4.326e^-4	0.811	INTRON Syx7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14595438	2L_14595438_SNP [dm3] 2L_14595438_SNP [dm6]	C	A	4.326e^-4	0.811	INTERGENIC
3R	19430628	3R_19430628_SNP [dm3] 3R_23604906_SNP [dm6]	G	C	4.328e^-4	0.811	NON_SYNONYMOUS_CODING CG10184 DOWNSTREAM CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13953900	3L_13953900_SNP [dm3] 3L_13960800_SNP [dm6]	C	A	4.332e^-4	0.811	INTRON CG32137
3L	9622630	3L_9622630_SNP [dm3] 3L_9629530_SNP [dm6]	T	A	4.332e^-4	0.811	UPSTREAM CG8336 & 1 other INTRON CG8336	TF binding site BDTNP1_TFBS_dl
2R	14565546	2R_14565546_SNP [dm3] 2R_18678041_SNP [dm6]	A	T	4.340e^-4	0.811	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	16480911	3L_16480911_SNP [dm3] 3L_16487811_SNP [dm6]	C	T	4.341e^-4	0.811	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	7221617	3L_7221617_SNP [dm3] 3L_7228517_SNP [dm6]	A	G	4.342e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15888568	3L_15888568_SNP [dm3] 3L_15895468_SNP [dm6]	A	C	4.344e^-4	0.811	INTRON pHCl
3R	16493100	3R_16493100_SNP [dm3] 3R_20667378_SNP [dm6]	T	C	4.351e^-4	0.811	INTERGENIC
3L	8324200	3L_8324200_SNP [dm3] 3L_8331100_SNP [dm6]	A	G	4.354e^-4	0.811	DOWNSTREAM CG34462 INTERGENIC
3R	16006778	3R_16006778_SNP [dm3] 3R_20181056_SNP [dm6]	G	T	4.355e^-4	0.811	INTERGENIC
3L	20762676	3L_20762676_SNP [dm3] 3L_20769576_SNP [dm6]	T	C	4.357e^-4	0.811	UPSTREAM CG4186 & 1 other DOWNSTREAM CG4042 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	7100187	X_7100187_SNP [dm3] X_7206154_SNP [dm6]	A	G	4.362e^-4	0.811	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_HSA
3R	3547001	3R_3547001_SNP [dm3] 3R_7721279_SNP [dm6]	T	C	4.376e^-4	0.811	DOWNSTREAM CR44260 INTERGENIC
3R	7937613	3R_7937613_DEL [dm3] 3R_12111891_DEL [dm6]	ATTAAGCCGA	A	4.379e^-4	0.811	DOWNSTREAM dpr17 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10605563	3L_10605563_SNP [dm3] 3L_10612463_SNP [dm6]	A	C	4.381e^-4	0.811	INTERGENIC
3L	11920196	3L_11920196_SNP [dm3] 3L_11927096_SNP [dm6]	G	C	4.388e^-4	0.811	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	10220428	3L_10220428_DEL [dm3] 3L_10227328_DEL [dm6]	TT	T	4.396e^-4	0.811	INTERGENIC
3L	11029375	3L_11029375_DEL [dm3] 3L_11036275_DEL [dm6]	ATGAA	A	4.397e^-4	0.811	DOWNSTREAM CG43693 & 1 other INTERGENIC
3L	13198766	3L_13198766_SNP [dm3] 3L_13205666_SNP [dm6]	A	T	4.397e^-4	0.811	INTERGENIC
3L	7221785	3L_7221785_SNP [dm3] 3L_7228685_SNP [dm6]	T	C	4.401e^-4	0.811	INTERGENIC
3R	16891841	3R_16891841_SNP [dm3] 3R_21066119_SNP [dm6]	T	G	4.412e^-4	0.811	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	22782478	3R_22782478_SNP [dm3] 3R_26956756_SNP [dm6]	A	G	4.416e^-4	0.811	INTRON CG6330	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	13572447	2R_13572447_SNP [dm3] 2R_17684942_SNP [dm6]	A	G	4.417e^-4	0.811	UPSTREAM CG42562 INTRON HPS4 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_hkb
3L	8357215	3L_8357215_SNP [dm3] 3L_8364115_SNP [dm6]	G	A	4.419e^-4	0.811	INTERGENIC
X	5180616	X_5180616_SNP [dm3] X_5286583_SNP [dm6]	T	C	4.420e^-4	0.811	INTERGENIC
2R	12304888	2R_12304888_SNP [dm3] 2R_16417383_SNP [dm6]	C	A	4.431e^-4	0.811	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
2R	12304903	2R_12304903_SNP [dm3] 2R_16417398_SNP [dm6]	G	A	4.431e^-4	0.811	UPSTREAM Menl-2 INTRON Sema-2b & 2 others
2R	15053986	2R_15053986_SNP [dm3] 2R_19166481_SNP [dm6]	C	T	4.439e^-4	0.811	INTRON CG10737
3L	21767873	3L_21767873_SNP [dm3] 3L_21774773_SNP [dm6]	C	A	4.440e^-4	0.811	UPSTREAM CG42552 INTRON CG42689

By genomic position
Variant impact
Gene name

mn_StartleResp_MSB phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results