DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.386e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02504
In_3R_Mo	0.06880

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	13.4889	0.0012
In_3R_P	5.5906	0.0611
In_3R_K	4.855	0.0883

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2487 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11480965	3L_11480965_SNP [dm3] 3L_11487865_SNP [dm6]	T	G	1.341e^-6	0.601	UTR_5_PRIME chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9614355	3R_9614355_SNP [dm3] 3R_13788633_SNP [dm6]	G	A	1.870e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19761612	X_19761612_SNP [dm3] X_19867579_SNP [dm6]	C	T	2.569e^-6	0.601	INTRON Hers	TF binding site BDTNP1_TFBS_dl
3R	15897709	3R_15897709_SNP [dm3] 3R_20071987_SNP [dm6]	C	A	3.120e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9613891	3R_9613891_SNP [dm3] 3R_13788169_SNP [dm6]	T	A	3.433e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8324200	3L_8324200_SNP [dm3] 3L_8331100_SNP [dm6]	A	G	3.458e^-6	0.601	DOWNSTREAM CG34462 INTERGENIC
2L	4960317	2L_4960317_SNP [dm3] 2L_4960317_SNP [dm6]	C	T	4.004e^-6	0.601	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26460819	3R_26460819_SNP [dm3] 3R_30635097_SNP [dm6]	G	T	4.007e^-6	0.601	INTERGENIC
3L	10653214	3L_10653214_DEL [dm3] 3L_10660114_DEL [dm6]	ATTTTCATTTG...	A	4.019e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26460536	3R_26460536_SNP [dm3] 3R_30634814_SNP [dm6]	T	C	4.835e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16371177	2L_16371177_SNP [dm3] 2L_16371177_SNP [dm6]	T	C	5.184e^-6	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	5.222e^-6	0.601	INTRON beat-VI
2L	14772203	2L_14772203_SNP [dm3] 2L_14772203_SNP [dm6]	A	G	5.789e^-6	0.601	INTERGENIC
X	19761382	X_19761382_SNP [dm3] X_19867349_SNP [dm6]	G	A	6.212e^-6	0.601	INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	6788349	X_6788349_SNP [dm3] X_6894316_SNP [dm6]	G	A	6.408e^-6	0.601	INTERGENIC
3R	15245807	3R_15245807_SNP [dm3] 3R_19420085_SNP [dm6]	C	A	6.489e^-6	0.601	INTRON CG31221
3L	10653161	3L_10653161_SNP [dm3] 3L_10660061_SNP [dm6]	C	A	6.768e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4029375	3L_4029375_SNP [dm3] 3L_4029375_SNP [dm6]	C	T	6.996e^-6	0.601	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
3R	15897630	3R_15897630_SNP [dm3] 3R_20071908_SNP [dm6]	A	T	7.532e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3606253	2L_3606253_SNP [dm3] 2L_3606253_SNP [dm6]	G	C	7.574e^-6	0.601	INTRON odd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13736815	3R_13736815_SNP [dm3] 3R_17911093_SNP [dm6]	C	T	7.857e^-6	0.601	UPSTREAM CG43445 INTRON Rim
3L	8216931	3L_8216931_SNP [dm3] 3L_8223831_SNP [dm6]	G	A	7.896e^-6	0.601	DOWNSTREAM CG13678 INTERGENIC
3R	15897629	3R_15897629_SNP [dm3] 3R_20071907_SNP [dm6]	G	T	8.140e^-6	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10653291	3L_10653291_SNP [dm3] 3L_10660191_SNP [dm6]	A	T	8.221e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10653293	3L_10653293_SNP [dm3] 3L_10660193_SNP [dm6]	T	A	8.522e^-6	0.601	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9277841	2R_9277841_SNP [dm3] 2R_13390336_SNP [dm6]	A	G	9.009e^-6	0.601	SYNONYMOUS_CODING CG43691
3L	13264634	3L_13264634_SNP [dm3] 3L_13271534_SNP [dm6]	A	C	9.605e^-6	0.601	INTRON caps
3R	13736835	3R_13736835_SNP [dm3] 3R_17911113_SNP [dm6]	A	G	9.685e^-6	0.601	UPSTREAM CG43445 INTRON Rim
3R	15245823	3R_15245823_SNP [dm3] 3R_19420101_SNP [dm6]	C	T	9.748e^-6	0.601	INTRON CG31221
3R	20099919	3R_20099919_SNP [dm3] 3R_24274197_SNP [dm6]	T	C	9.853e^-6	0.601	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13919847	X_13919847_DEL [dm3] X_14025814_DEL [dm6]	TT	T	1.008e^-5	0.601	UPSTREAM tRNA:S774:12Ec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	5064393	2L_5064393_SNP [dm3] 2L_5064393_SNP [dm6]	T	C	1.026e^-5	0.601	UTR_5_PRIME qtc UPSTREAM CR43820 INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10653268	3L_10653268_SNP [dm3] 3L_10660168_SNP [dm6]	T	A	1.105e^-5	0.602	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13736891	3R_13736891_SNP [dm3] 3R_17911169_SNP [dm6]	T	A	1.116e^-5	0.602	UPSTREAM CG43445 INTRON Rim
3L	20787917	3L_20787917_SNP [dm3] 3L_20794817_SNP [dm6]	G	A	1.151e^-5	0.602	DOWNSTREAM CR43705 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8441693	2R_8441693_SNP [dm3] 2R_12554188_SNP [dm6]	A	T	1.169e^-5	0.602	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3L	6750993	3L_6750993_SNP [dm3] 3L_6757893_SNP [dm6]	A	G	1.187e^-5	0.602	SYNONYMOUS_CODING CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10653278	3L_10653278_SNP [dm3] 3L_10660178_SNP [dm6]	C	T	1.272e^-5	0.626	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15584092	X_15584092_SNP [dm3] X_15690059_SNP [dm6]	T	C	1.302e^-5	0.626	INTRON CG43132	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16358228	3L_16358228_SNP [dm3] 3L_16365128_SNP [dm6]	G	A	1.376e^-5	0.626	SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	1.392e^-5	0.626	INTERGENIC
3R	15245856	3R_15245856_SNP [dm3] 3R_19420134_SNP [dm6]	A	C	1.402e^-5	0.626	INTRON CG31221
3R	20100081	3R_20100081_SNP [dm3] 3R_24274359_SNP [dm6]	G	C	1.535e^-5	0.661	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15245511	3R_15245511_SNP [dm3] 3R_19419789_SNP [dm6]	T	A	1.554e^-5	0.661	INTRON CG31221
2L	18513994	2L_18513994_SNP [dm3] 2L_18513994_SNP [dm6]	T	A	1.585e^-5	0.661	DOWNSTREAM CG10178 INTERGENIC
2L	14904374	2L_14904374_SNP [dm3] 2L_14904374_SNP [dm6]	G	A	1.651e^-5	0.671	INTERGENIC
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	1.681e^-5	0.671	INTERGENIC
3R	12243844	3R_12243844_SNP [dm3] 3R_16418122_SNP [dm6]	A	G	1.879e^-5	0.674	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	14846044	2L_14846044_SNP [dm3] 2L_14846044_SNP [dm6]	G	T	1.882e^-5	0.674	SYNONYMOUS_CODING CG15279
3L	1252000	3L_1252000_SNP [dm3] 3L_1252000_SNP [dm6]	G	A	1.958e^-5	0.674	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	10653170	3L_10653170_DEL [dm3] 3L_10660070_DEL [dm6]	AGATTAAATTTAA...	A	2.028e^-5	0.674	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	960797	2L_960797_SNP [dm3] 2L_960797_SNP [dm6]	C	A	2.150e^-5	0.674	INTERGENIC
3L	8974968	3L_8974968_SNP [dm3] 3L_8981868_SNP [dm6]	T	C	2.160e^-5	0.674	START_GAINED CG13314 UTR_5_PRIME CG13314 UPSTREAM CG13314 DOWNSTREAM Galk
2L	19271009	2L_19271009_SNP [dm3] 2L_19271009_SNP [dm6]	C	T	2.202e^-5	0.674	INTRON CR44190
2L	19271015	2L_19271015_SNP [dm3] 2L_19271015_SNP [dm6]	C	T	2.202e^-5	0.674	INTRON CR44190
3L	10653284	3L_10653284_SNP [dm3] 3L_10660184_SNP [dm6]	A	G	2.215e^-5	0.674	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13866074	2L_13866074_SNP [dm3] 2L_13866074_SNP [dm6]	A	T	2.234e^-5	0.674	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	16823106	3R_16823106_SNP [dm3] 3R_20997384_SNP [dm6]	C	T	2.301e^-5	0.674	INTRON Calx
3R	14701643	3R_14701643_SNP [dm3] 3R_18875921_SNP [dm6]	C	T	2.320e^-5	0.674	NON_SYNONYMOUS_CODING CG14298
2L	13726762	2L_13726762_SNP [dm3] 2L_13726762_SNP [dm6]	T	C	2.324e^-5	0.674	INTERGENIC
3R	15393934	3R_15393934_SNP [dm3] 3R_19568212_SNP [dm6]	A	G	2.422e^-5	0.674	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
2L	13726764	2L_13726764_SNP [dm3] 2L_13726764_SNP [dm6]	G	T	2.439e^-5	0.674	INTERGENIC
3L	12031926	3L_12031926_SNP [dm3] 3L_12038826_SNP [dm6]	T	G	2.518e^-5	0.674	INTRON rols	TF binding site mE1_TFBS_inv
3R	26456354	3R_26456354_SNP [dm3] 3R_30630632_SNP [dm6]	C	T	2.525e^-5	0.674	INTERGENIC	TF binding site mE1_TFBS_cad
X	6166345	X_6166345_SNP [dm3] X_6272312_SNP [dm6]	A	C	2.557e^-5	0.674	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	17244422	X_17244422_SNP [dm3] X_17350389_SNP [dm6]	A	T	2.561e^-5	0.674	INTERGENIC
3L	5472512	3L_5472512_SNP [dm3] 3L_5479412_SNP [dm6]	G	C	2.579e^-5	0.674	UPSTREAM CG4835 INTERGENIC
2L	14846035	2L_14846035_SNP [dm3] 2L_14846035_SNP [dm6]	G	A	2.616e^-5	0.674	SYNONYMOUS_CODING CG15279
3R	13736899	3R_13736899_SNP [dm3] 3R_17911177_SNP [dm6]	T	C	2.655e^-5	0.674	UPSTREAM CG43445 INTRON Rim
3L	10653279	3L_10653279_SNP [dm3] 3L_10660179_SNP [dm6]	C	T	2.718e^-5	0.674	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5228235	3R_5228235_SNP [dm3] 3R_9402513_SNP [dm6]	T	G	2.779e^-5	0.674	UTR_3_PRIME CG8132 DOWNSTREAM CG9356	TF binding site mE1_TFBS_chinmo
3L	15995416	3L_15995416_SNP [dm3] 3L_16002316_SNP [dm6]	C	T	2.797e^-5	0.674	INTRON CG5830	TF binding site BDTNP1_TFBS_hb
3L	18806096	3L_18806096_SNP [dm3] 3L_18812996_SNP [dm6]	C	T	2.828e^-5	0.674	INTRON CG14073
2L	4215269	2L_4215269_SNP [dm3] 2L_4215269_SNP [dm6]	T	C	2.872e^-5	0.674	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17244432	X_17244432_DEL [dm3] X_17350399_DEL [dm6]	CGC	C	2.882e^-5	0.674	INTERGENIC
3R	19388517	3R_19388517_SNP [dm3] 3R_23562795_SNP [dm6]	G	A	2.950e^-5	0.674	INTRON beat-IV	TF binding site mE1_TFBS_HSA
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	2.989e^-5	0.674	DOWNSTREAM CG4525 INTERGENIC
2L	16371128	2L_16371128_SNP [dm3] 2L_16371128_SNP [dm6]	T	C	3.065e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	8423990	2L_8423990_SNP [dm3] 2L_8423990_SNP [dm6]	T	C	3.107e^-5	0.674	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	3919520	3L_3919520_SNP [dm3] 3L_3919520_SNP [dm6]	C	T	3.166e^-5	0.674	INTRON Eip63F-1
3R	20100228	3R_20100228_SNP [dm3] 3R_24274506_SNP [dm6]	T	C	3.197e^-5	0.674	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11284756	3R_11284756_SNP [dm3] 3R_15459034_SNP [dm6]	C	T	3.199e^-5	0.674	INTRON AdamTS-A
X	6653348	X_6653348_SNP [dm3] X_6759315_SNP [dm6]	G	T	3.368e^-5	0.674	UPSTREAM CG14438 INTRON CG14438 & 1 other EXON CR43496	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	22878085	3R_22878085_SNP [dm3] 3R_27052363_SNP [dm6]	C	G	3.377e^-5	0.674	INTRON RYa-R
2R	19038910	2R_19038910_SNP [dm3] 2R_23151387_SNP [dm6]	A	G	3.425e^-5	0.674	INTERGENIC
2R	8188473	2R_8188473_SNP [dm3] 2R_12300968_SNP [dm6]	T	C	3.454e^-5	0.674	DOWNSTREAM CG42700 INTRON CG8850	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	17293395	X_17293395_SNP [dm3] X_17399362_SNP [dm6]	A	G	3.528e^-5	0.674	INTRON B-H1
2R	19365668	2R_19365668_SNP [dm3] 2R_23478145_SNP [dm6]	G	A	3.655e^-5	0.674	UPSTREAM CR43793 INTRON CG43795
2L	16371125	2L_16371125_SNP [dm3] 2L_16371125_SNP [dm6]	T	C	3.671e^-5	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	5904560	2L_5904560_SNP [dm3] 2L_5904560_SNP [dm6]	G	A	3.675e^-5	0.674	DOWNSTREAM CR43808 INTRON CG9021
X	17610235	X_17610235_SNP [dm3] X_17716202_SNP [dm6]	G	A	3.741e^-5	0.674	INTRON CG42684
2L	957232	2L_957232_SNP [dm3] 2L_957232_SNP [dm6]	A	C	3.756e^-5	0.674	INTRON CG4341
2L	18513693	2L_18513693_SNP [dm3] 2L_18513693_SNP [dm6]	T	G	3.769e^-5	0.674	DOWNSTREAM CG10178 INTERGENIC
3L	8685352	3L_8685352_SNP [dm3] 3L_8692252_SNP [dm6]	T	A	3.776e^-5	0.674	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6965762	2R_6965762_SNP [dm3] 2R_11078257_SNP [dm6]	G	T	3.781e^-5	0.674	INTRON luna
X	13447316	X_13447316_SNP [dm3] X_13553283_SNP [dm6]	C	T	3.816e^-5	0.674	INTRON CG11816
3R	11603420	3R_11603420_SNP [dm3] 3R_15777698_SNP [dm6]	A	T	3.833e^-5	0.674	DOWNSTREAM CG4525 INTERGENIC
2R	17023751	2R_17023751_SNP [dm3] 2R_21136246_SNP [dm6]	G	A	3.843e^-5	0.674	INTRON Magi	TF binding site mE1_TFBS_sens
3R	13736897	3R_13736897_SNP [dm3] 3R_17911175_SNP [dm6]	T	C	3.853e^-5	0.674	UPSTREAM CG43445 INTRON Rim
X	16375305	X_16375305_SNP [dm3] X_16481272_SNP [dm6]	A	T	3.897e^-5	0.674	INTRON para

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.769e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.009544
In_3R_K	0.009534

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	10.2357	0.006
In_3R_P	6.7379	0.0344
In_3R_K	6.6025	0.0368

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2209 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	20787917	3L_20787917_SNP [dm3] 3L_20794817_SNP [dm6]	G	A	4.904e^-8	0.092	DOWNSTREAM CR43705 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10199961	2L_10199961_SNP [dm3] 2L_10199961_SNP [dm6]	C	T	1.375e^-6	0.808	SYNONYMOUS_CODING Ripalpha UPSTREAM Sur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	20780549	3L_20780549_SNP [dm3] 3L_20787449_SNP [dm6]	A	G	2.243e^-6	0.808	SYNONYMOUS_CODING CG11396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19558544	3R_19558544_SNP [dm3] 3R_23732822_SNP [dm6]	C	T	2.423e^-6	0.808	SYNONYMOUS_CODING Rpn9 UPSTREAM Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25329659	3R_25329659_SNP [dm3] 3R_29503937_SNP [dm6]	C	A	2.440e^-6	0.808	UPSTREAM Trc8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	26353092	3R_26353092_SNP [dm3] 3R_30527370_SNP [dm6]	A	T	2.764e^-6	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26460536	3R_26460536_SNP [dm3] 3R_30634814_SNP [dm6]	T	C	3.198e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26353159	3R_26353159_SNP [dm3] 3R_30527437_SNP [dm6]	A	G	3.744e^-6	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26353227	3R_26353227_SNP [dm3] 3R_30527505_SNP [dm6]	C	T	4.377e^-6	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	4.571e^-6	0.808	INTRON fru	TF binding site BDTNP1_TFBS_da
3L	10201236	3L_10201236_SNP [dm3] 3L_10208136_SNP [dm6]	A	G	5.247e^-6	0.808	INTERGENIC
3R	19203789	3R_19203789_SNP [dm3] 3R_23378067_SNP [dm6]	A	G	6.175e^-6	0.808	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_inv
2L	5514409	2L_5514409_MNP [dm3] 2L_5514409_MNP [dm6]	CCA	GAC	6.459e^-6	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9192484	3R_9192484_SNP [dm3] 3R_13366762_SNP [dm6]	G	T	6.655e^-6	0.808	SPLICE_SITE_REGION poly UTR_5_PRIME poly UPSTREAM Dic1 INTRON Dic1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5570357	3L_5570357_SNP [dm3] 3L_5577257_SNP [dm6]	C	T	8.427e^-6	0.808	UTR_5_PRIME Msr-110
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	9.674e^-6	0.808	INTRON kek6
X	22149782	X_22149782_DEL [dm3] X_22747946_DEL [dm6]	TTACCCCCGGCT...	T	9.934e^-6	0.808	INTRON CR44997
3R	23293035	3R_23293035_SNP [dm3] 3R_27467313_SNP [dm6]	C	T	1.002e^-5	0.808	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11075605	3L_11075605_SNP [dm3] 3L_11082505_SNP [dm6]	T	G	1.054e^-5	0.808	INTRON JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26354574	3R_26354574_SNP [dm3] 3R_30528852_SNP [dm6]	C	T	1.121e^-5	0.808	DOWNSTREAM CR45552 INTRON CR45552
3L	20781035	3L_20781035_SNP [dm3] 3L_20787935_SNP [dm6]	G	A	1.131e^-5	0.808	SYNONYMOUS_CODING CG11396 DOWNSTREAM Six4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8731397	3L_8731397_SNP [dm3] 3L_8738297_SNP [dm6]	T	G	1.136e^-5	0.808	INTRON Prm
2R	14175306	2R_14175306_DEL [dm3] 2R_18287801_DEL [dm6]	CGTACTAAATGGGG...	TC	1.191e^-5	0.808	UPSTREAM CG14502 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
3R	26452186	3R_26452186_SNP [dm3] 3R_30626464_SNP [dm6]	G	A	1.200e^-5	0.808	UPSTREAM CR44136 DOWNSTREAM CG2267 INTERGENIC
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	1.275e^-5	0.808	INTRON jigr1
2R	5708494	2R_5708494_SNP [dm3] 2R_9820989_SNP [dm6]	C	T	1.453e^-5	0.808	SYNONYMOUS_CODING CG34033 UPSTREAM CG1648 DOWNSTREAM CG30001	TF binding site mE1_TFBS_sens
2L	19845475	2L_19845475_SNP [dm3] 2L_19845475_SNP [dm6]	A	T	1.469e^-5	0.808	UTR_5_PRIME sick INTRON sick
2L	3200669	2L_3200669_SNP [dm3] 2L_3200669_SNP [dm6]	G	C	1.529e^-5	0.808	UPSTREAM CG34393 INTERGENIC
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	1.530e^-5	0.808	INTRON beat-VI
2R	9055073	2R_9055073_SNP [dm3] 2R_13167568_SNP [dm6]	A	G	1.537e^-5	0.808	UPSTREAM Spt-I DOWNSTREAM CR45142 INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	734321	2L_734321_SNP [dm3] 2L_734321_SNP [dm6]	G	C	1.548e^-5	0.808	INTERGENIC
3L	10653278	3L_10653278_SNP [dm3] 3L_10660178_SNP [dm6]	C	T	1.671e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3919520	3L_3919520_SNP [dm3] 3L_3919520_SNP [dm6]	C	T	1.703e^-5	0.808	INTRON Eip63F-1
3R	7255676	3R_7255676_SNP [dm3] 3R_11429954_SNP [dm6]	T	A	1.710e^-5	0.808	UTR_3_PRIME CG5270 UPSTREAM CG18643 DOWNSTREAM RpL24-like
2L	14180146	2L_14180146_SNP [dm3] 2L_14180146_SNP [dm6]	T	A	1.740e^-5	0.808	INTRON CG43333
3R	26460819	3R_26460819_SNP [dm3] 3R_30635097_SNP [dm6]	G	T	1.803e^-5	0.808	INTERGENIC
3L	20717846	3L_20717846_SNP [dm3] 3L_20724746_SNP [dm6]	A	C	1.839e^-5	0.808	INTERGENIC
2L	4415376	2L_4415376_SNP [dm3] 2L_4415376_SNP [dm6]	G	A	2.001e^-5	0.808	INTRON CG15431
3R	26692292	3R_26692292_SNP [dm3] 3R_30866570_SNP [dm6]	A	T	2.006e^-5	0.808	UPSTREAM Cpr100A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3663860	3L_3663860_SNP [dm3] 3L_3663860_SNP [dm6]	C	T	2.131e^-5	0.808	INTERGENIC
3R	14137026	3R_14137026_SNP [dm3] 3R_18311304_SNP [dm6]	A	T	2.199e^-5	0.808	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	9235700	X_9235700_SNP [dm3] X_9341667_SNP [dm6]	C	T	2.271e^-5	0.808	INTRON CG34449
3R	18189024	3R_18189024_SNP [dm3] 3R_22363302_SNP [dm6]	G	A	2.277e^-5	0.808	UPSTREAM PSR INTRON CG7071 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	2.285e^-5	0.808	INTRON jigr1
3R	22251521	3R_22251521_SNP [dm3] 3R_26425799_SNP [dm6]	G	T	2.289e^-5	0.808	UPSTREAM CG6503 & 1 other INTRON CR31084
3R	23293097	3R_23293097_SNP [dm3] 3R_27467375_SNP [dm6]	G	C	2.362e^-5	0.808	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
2L	11037971	2L_11037971_SNP [dm3] 2L_11037971_SNP [dm6]	A	G	2.544e^-5	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	10886120	3L_10886120_SNP [dm3] 3L_10893020_SNP [dm6]	C	A	2.673e^-5	0.808	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	6587905	2L_6587905_SNP [dm3] 2L_6587905_SNP [dm6]	G	A	2.751e^-5	0.808	INTRON CG11319
3R	26107197	3R_26107197_SNP [dm3] 3R_30281475_SNP [dm6]	C	G	2.770e^-5	0.808	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	6457131	3L_6457131_SNP [dm3] 3L_6464031_SNP [dm6]	T	G	2.850e^-5	0.808	INTRON CG42747
3R	23293040	3R_23293040_SNP [dm3] 3R_27467318_SNP [dm6]	T	C	2.881e^-5	0.808	DOWNSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4415311	2L_4415311_SNP [dm3] 2L_4415311_SNP [dm6]	C	G	2.974e^-5	0.808	INTRON CG15431
3R	14137019	3R_14137019_SNP [dm3] 3R_18311297_SNP [dm6]	T	A	2.975e^-5	0.808	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1252026	2L_1252026_SNP [dm3] 2L_1252026_SNP [dm6]	G	C	3.038e^-5	0.808	INTERGENIC
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	3.054e^-5	0.808	INTRON jigr1
2L	1009256	2L_1009256_SNP [dm3] 2L_1009256_SNP [dm6]	A	G	3.060e^-5	0.808	UTR_3_PRIME IA-2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	10001272	2R_10001272_SNP [dm3] 2R_14113767_SNP [dm6]	C	G	3.135e^-5	0.808	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3200674	2L_3200674_SNP [dm3] 2L_3200674_SNP [dm6]	T	C	3.142e^-5	0.808	UPSTREAM CG34393 INTERGENIC
3L	16358228	3L_16358228_SNP [dm3] 3L_16365128_SNP [dm6]	G	A	3.143e^-5	0.808	SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
3R	25858646	3R_25858646_SNP [dm3] 3R_30032924_SNP [dm6]	G	T	3.252e^-5	0.808	SPLICE_SITE_REGION Axn INTRON Axn	TF binding site mE1_TFBS_cad
3R	17970268	3R_17970268_SNP [dm3] 3R_22144546_SNP [dm6]	A	T	3.327e^-5	0.808	INTRON SKIP
2R	10001289	2R_10001289_SNP [dm3] 2R_14113784_SNP [dm6]	A	G	3.380e^-5	0.808	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	10653291	3L_10653291_SNP [dm3] 3L_10660191_SNP [dm6]	A	T	3.384e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26456354	3R_26456354_SNP [dm3] 3R_30630632_SNP [dm6]	C	T	3.396e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_cad
X	17556599	X_17556599_SNP [dm3] X_17662566_SNP [dm6]	A	G	3.428e^-5	0.808	SYNONYMOUS_CODING beta-Spec	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	3.464e^-5	0.808	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14565499	2R_14565499_SNP [dm3] 2R_18677994_SNP [dm6]	G	T	3.529e^-5	0.808	DOWNSTREAM CG44434 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	16006819	3R_16006819_SNP [dm3] 3R_20181097_SNP [dm6]	C	T	3.626e^-5	0.808	INTERGENIC
3R	5887151	3R_5887151_SNP [dm3] 3R_10061429_SNP [dm6]	A	G	3.629e^-5	0.808	UPSTREAM CR33629 DOWNSTREAM Npc2c EXON CR45205
3R	26458588	3R_26458588_SNP [dm3] 3R_30632866_SNP [dm6]	T	A	3.815e^-5	0.808	INTERGENIC
2L	11037877	2L_11037877_SNP [dm3] 2L_11037877_SNP [dm6]	A	T	3.950e^-5	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6588568	2L_6588568_SNP [dm3] 2L_6588568_SNP [dm6]	T	G	4.006e^-5	0.808	INTRON CG11319
3R	17872318	3R_17872318_SNP [dm3] 3R_22046596_SNP [dm6]	G	A	4.076e^-5	0.808	INTRON how	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10653214	3L_10653214_DEL [dm3] 3L_10660114_DEL [dm6]	ATTTTCATTTG...	A	4.155e^-5	0.808	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11037896	2L_11037896_SNP [dm3] 2L_11037896_SNP [dm6]	A	G	4.198e^-5	0.808	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15054382	2R_15054382_SNP [dm3] 2R_19166877_SNP [dm6]	G	A	4.223e^-5	0.808	INTRON CG10737	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	4.255e^-5	0.808	DOWNSTREAM CG4525 INTERGENIC
2L	5457360	2L_5457360_SNP [dm3] 2L_5457360_SNP [dm6]	C	T	4.409e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	3778388	2L_3778388_SNP [dm3] 2L_3778388_SNP [dm6]	A	T	4.530e^-5	0.808	UPSTREAM bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1252000	3L_1252000_SNP [dm3] 3L_1252000_SNP [dm6]	G	A	4.538e^-5	0.808	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
2R	6639804	2R_6639804_SNP [dm3] 2R_10752299_SNP [dm6]	T	C	4.555e^-5	0.808	INTRON CG33144
3L	15918281	3L_15918281_SNP [dm3] 3L_15925181_SNP [dm6]	A	C	4.558e^-5	0.808	UPSTREAM sff DOWNSTREAM Pka-C3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26353068	3R_26353068_SNP [dm3] 3R_30527346_SNP [dm6]	T	A	4.623e^-5	0.808	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26354577	3R_26354577_INS [dm3] 3R_30528855_INS [dm6]	AA	CCATATGTT	4.667e^-5	0.808	DOWNSTREAM CR45552 INTRON CR45552
2L	5457327	2L_5457327_SNP [dm3] 2L_5457327_SNP [dm6]	G	A	4.766e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	4.774e^-5	0.808	INTERGENIC
3R	21460150	3R_21460150_SNP [dm3] 3R_25634428_SNP [dm6]	G	A	4.812e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19233320	2L_19233320_SNP [dm3] 2L_19233320_SNP [dm6]	T	A	4.840e^-5	0.808	INTERGENIC
2L	14181953	2L_14181953_SNP [dm3] 2L_14181953_SNP [dm6]	T	C	4.868e^-5	0.808	INTERGENIC
3L	3518734	3L_3518734_DEL [dm3] 3L_3518734_DEL [dm6]	TATGT	T	4.980e^-5	0.808	INTRON Eip63E
2L	5457366	2L_5457366_MNP [dm3] 2L_5457366_MNP [dm6]	ACAATT	TGTTAC	5.002e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	8718581	2L_8718581_SNP [dm3] 2L_8718581_SNP [dm6]	G	T	5.045e^-5	0.808	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19177650	3R_19177650_SNP [dm3] 3R_23351928_SNP [dm6]	C	T	5.061e^-5	0.808	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
3L	3848469	3L_3848469_SNP [dm3] 3L_3848469_SNP [dm6]	T	C	5.073e^-5	0.808	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	4029375	3L_4029375_SNP [dm3] 3L_4029375_SNP [dm6]	C	T	5.166e^-5	0.808	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
3L	12858912	3L_12858912_SNP [dm3] 3L_12865812_SNP [dm6]	G	A	5.303e^-5	0.808	INTERGENIC
3R	25291514	3R_25291514_SNP [dm3] 3R_29465792_SNP [dm6]	A	G	5.325e^-5	0.808	INTRON Ptp99A
3R	22776786	3R_22776786_SNP [dm3] 3R_26951064_SNP [dm6]	C	T	5.347e^-5	0.808	SPLICE_SITE_REGION CG6330 INTRON CG6330	TF binding site mE1_TFBS_cad
3R	3976298	3R_3976298_SNP [dm3] 3R_8150576_SNP [dm6]	A	G	5.390e^-5	0.808	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA

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By genomic position
Variant impact
Gene name

mn_StartleResp_MSB phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results