DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.266e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004465
In_2R_NS	0.070339
In_3R_K	0.004053

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	10.0918	0.0064
In_3R_K	8.3924	0.0151

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2501 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	12591369	3R_12591369_SNP [dm3] 3R_16765647_SNP [dm6]	C	A	9.977e^-8	0.187	UPSTREAM tre-2 INTRON bxd EXON tre-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15393938	3R_15393938_SNP [dm3] 3R_19568216_SNP [dm6]	A	T	6.206e^-7	0.333	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
3R	15393934	3R_15393934_SNP [dm3] 3R_19568212_SNP [dm6]	A	G	6.611e^-7	0.333	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
3R	12590937	3R_12590937_SNP [dm3] 3R_16765215_SNP [dm6]	A	C	7.880e^-7	0.333	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18188513	3R_18188513_SNP [dm3] 3R_22362791_SNP [dm6]	G	T	9.644e^-7	0.333	START_GAINED Muted & 1 other UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12590494	3R_12590494_SNP [dm3] 3R_16764772_SNP [dm6]	G	T	1.107e^-6	0.333	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12590079	3R_12590079_SNP [dm3] 3R_16764357_SNP [dm6]	G	T	1.245e^-6	0.333	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12590912	3R_12590912_SNP [dm3] 3R_16765190_SNP [dm6]	G	A	1.578e^-6	0.34	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12591125	3R_12591125_SNP [dm3] 3R_16765403_SNP [dm6]	G	A	1.644e^-6	0.34	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18188486	3R_18188486_SNP [dm3] 3R_22362764_SNP [dm6]	C	T	1.815e^-6	0.34	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18188518	3R_18188518_SNP [dm3] 3R_22362796_SNP [dm6]	C	T	2.092e^-6	0.357	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	2.417e^-6	0.378	DOWNSTREAM CG4525 INTERGENIC
3R	15245740	3R_15245740_SNP [dm3] 3R_19420018_SNP [dm6]	A	G	2.868e^-6	0.414	INTRON CG31221
3R	25791708	3R_25791708_SNP [dm3] 3R_29965986_SNP [dm6]	G	A	3.193e^-6	0.428	INTRON TkR99D
2L	16318586	2L_16318586_SNP [dm3] 2L_16318586_SNP [dm6]	T	A	3.964e^-6	0.496	INTRON cact	TF binding site BDTNP1_TFBS_twi
3R	22613955	3R_22613955_DEL [dm3] 3R_26788233_DEL [dm6]	GG	G	4.338e^-6	0.508	INTERGENIC
3R	12590482	3R_12590482_SNP [dm3] 3R_16764760_SNP [dm6]	T	C	4.715e^-6	0.508	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12581869	3R_12581869_SNP [dm3] 3R_16756147_SNP [dm6]	T	A	4.876e^-6	0.508	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12589112	3R_12589112_SNP [dm3] 3R_16763390_SNP [dm6]	A	G	5.710e^-6	0.528	DOWNSTREAM tre-2 INTRON bxd EXON tre-3	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12589603	3R_12589603_SNP [dm3] 3R_16763881_SNP [dm6]	C	T	5.982e^-6	0.528	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18822982	3L_18822982_SNP [dm3] 3L_18829882_SNP [dm6]	T	C	6.299e^-6	0.528	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
2R	10484430	2R_10484430_SNP [dm3] 2R_14596925_SNP [dm6]	G	T	6.673e^-6	0.528	SYNONYMOUS_CODING RpI1
3R	11967326	3R_11967326_INS [dm3] 3R_16141604_INS [dm6]	G	GG	6.698e^-6	0.528	INTRON Sb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15153994	3R_15153994_SNP [dm3] 3R_19328272_SNP [dm6]	T	A	7.496e^-6	0.528	UPSTREAM CR44175 INTERGENIC
3R	19546958	3R_19546958_SNP [dm3] 3R_23721236_SNP [dm6]	T	A	7.601e^-6	0.528	INTRON CG10232
3L	3811785	3L_3811785_SNP [dm3] 3L_3811785_SNP [dm6]	G	T	7.622e^-6	0.528	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11603420	3R_11603420_SNP [dm3] 3R_15777698_SNP [dm6]	A	T	7.705e^-6	0.528	DOWNSTREAM CG4525 INTERGENIC
2R	10483497	2R_10483497_SNP [dm3] 2R_14595992_SNP [dm6]	C	T	8.332e^-6	0.528	SYNONYMOUS_CODING RpI1 DOWNSTREAM CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16736775	3L_16736775_SNP [dm3] 3L_16743675_SNP [dm6]	T	C	8.497e^-6	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	12588668	3R_12588668_SNP [dm3] 3R_16762946_SNP [dm6]	T	C	8.829e^-6	0.528	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17879485	3R_17879485_DEL [dm3] 3R_22053763_DEL [dm6]	TGA	T	9.663e^-6	0.528	INTRON how
3R	17879508	3R_17879508_SNP [dm3] 3R_22053786_SNP [dm6]	C	G	9.703e^-6	0.528	INTRON how	TF binding site BDTNP1_TFBS_dl
2R	10483150	2R_10483150_SNP [dm3] 2R_14595645_SNP [dm6]	A	G	9.725e^-6	0.528	UTR_3_PRIME RpI1 DOWNSTREAM CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9277841	2R_9277841_SNP [dm3] 2R_13390336_SNP [dm6]	A	G	9.770e^-6	0.528	SYNONYMOUS_CODING CG43691
3R	12590423	3R_12590423_SNP [dm3] 3R_16764701_SNP [dm6]	A	T	9.855e^-6	0.528	UPSTREAM tre-3 DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10483916	2R_10483916_SNP [dm3] 2R_14596411_SNP [dm6]	C	T	1.069e^-5	0.546	DOWNSTREAM CG12869 INTRON RpI1	TF binding site mE1_TFBS_cad
3R	26088821	3R_26088821_SNP [dm3] 3R_30263099_SNP [dm6]	T	C	1.082e^-5	0.546	INTERGENIC
2R	19540466	2R_19540466_SNP [dm3] 2R_23652943_SNP [dm6]	T	C	1.120e^-5	0.546	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	12590495	3R_12590495_SNP [dm3] 3R_16764773_SNP [dm6]	G	T	1.152e^-5	0.546	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17879472	3R_17879472_SNP [dm3] 3R_22053750_SNP [dm6]	T	C	1.210e^-5	0.546	INTRON how
3R	17879496	3R_17879496_SNP [dm3] 3R_22053774_SNP [dm6]	A	T	1.265e^-5	0.546	INTRON how
3L	10355353	3L_10355353_SNP [dm3] 3L_10362253_SNP [dm6]	T	A	1.277e^-5	0.546	EXON CR44327	TF binding site BDTNP1_TFBS_dl
3L	3754590	3L_3754590_SNP [dm3] 3L_3754590_SNP [dm6]	T	C	1.279e^-5	0.546	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
X	9205787	X_9205787_SNP [dm3] X_9311754_SNP [dm6]	G	A	1.280e^-5	0.546	INTERGENIC
3R	12581868	3R_12581868_SNP [dm3] 3R_16756146_SNP [dm6]	G	A	1.310e^-5	0.546	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12588689	3R_12588689_SNP [dm3] 3R_16762967_SNP [dm6]	A	G	1.375e^-5	0.56	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11640582	3L_11640582_SNP [dm3] 3L_11647482_SNP [dm6]	C	G	1.403e^-5	0.56	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	23505699	3R_23505699_SNP [dm3] 3R_27679977_SNP [dm6]	T	A	1.461e^-5	0.565	UTR_3_PRIME CG12883 DOWNSTREAM CG5590 & 1 other	TF binding site mE1_TFBS_HSA
X	14643794	X_14643794_SNP [dm3] X_14749761_SNP [dm6]	G	A	1.476e^-5	0.565	UPSTREAM NetB INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17711141	2L_17711141_SNP [dm3] 2L_17711141_SNP [dm6]	T	C	1.585e^-5	0.576	INTRON CadN	TF binding site mE1_TFBS_sbb
3R	20998498	3R_20998498_SNP [dm3] 3R_25172776_SNP [dm6]	A	T	1.597e^-5	0.576	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	22950351	3R_22950351_SNP [dm3] 3R_27124629_SNP [dm6]	G	T	1.619e^-5	0.576	UTR_5_PRIME CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad
3L	3848469	3L_3848469_SNP [dm3] 3L_3848469_SNP [dm6]	T	C	1.664e^-5	0.576	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	14700750	3R_14700750_SNP [dm3] 3R_18875028_SNP [dm6]	C	G	1.687e^-5	0.576	UPSTREAM CG14298 INTERGENIC
3R	16867238	3R_16867238_SNP [dm3] 3R_21041516_SNP [dm6]	G	A	1.708e^-5	0.576	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	15399259	3R_15399259_SNP [dm3] 3R_19573537_SNP [dm6]	G	A	1.757e^-5	0.576	INTRON Dys
3L	11640552	3L_11640552_SNP [dm3] 3L_11647452_SNP [dm6]	C	T	1.790e^-5	0.576	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	22000418	3R_22000418_SNP [dm3] 3R_26174696_SNP [dm6]	G	A	1.824e^-5	0.576	INTRON CG31323
2L	21901118	2L_21901118_SNP [dm3] 2L_21901118_SNP [dm6]	A	G	1.827e^-5	0.576	INTERGENIC
3L	11640621	3L_11640621_SNP [dm3] 3L_11647521_SNP [dm6]	T	G	1.877e^-5	0.576	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3L	11640561	3L_11640561_SNP [dm3] 3L_11647461_SNP [dm6]	C	T	1.885e^-5	0.576	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	12590950	3R_12590950_SNP [dm3] 3R_16765228_SNP [dm6]	G	A	1.905e^-5	0.576	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10179297	2L_10179297_SNP [dm3] 2L_10179297_SNP [dm6]	C	T	1.974e^-5	0.587	INTRON CG44153
3L	10814142	3L_10814142_SNP [dm3] 3L_10821042_SNP [dm6]	A	C	2.004e^-5	0.587	INTERGENIC
2R	602938	2R_602938_INS [dm3] 2R_4715433_INS [dm6]	A	ATTTAAGCGA	2.048e^-5	0.591	INTRON Nipped-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	2094525	3L_2094525_SNP [dm3] 3L_2094525_SNP [dm6]	C	T	2.116e^-5	0.593	INTRON sls
3R	4770746	3R_4770746_SNP [dm3] 3R_8945024_SNP [dm6]	A	G	2.134e^-5	0.593	UPSTREAM CG11964 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4552999	2R_4552999_SNP [dm3] 2R_8665494_SNP [dm6]	T	A	2.159e^-5	0.593	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	11040490	3R_11040490_SNP [dm3] 3R_15214768_SNP [dm6]	T	G	2.231e^-5	0.593	UTR_3_PRIME CG4210 & 1 other
2L	13851355	2L_13851355_SNP [dm3] 2L_13851355_SNP [dm6]	A	G	2.255e^-5	0.593	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	11640159	3L_11640159_SNP [dm3] 3L_11647059_SNP [dm6]	T	C	2.264e^-5	0.593	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	22987040	3R_22987040_SNP [dm3] 3R_27161318_SNP [dm6]	C	T	2.276e^-5	0.593	UTR_5_PRIME CG5909
3L	2094832	3L_2094832_SNP [dm3] 3L_2094832_SNP [dm6]	T	C	2.358e^-5	0.598	SYNONYMOUS_CODING sls
X	5399926	X_5399926_SNP [dm3] X_5505893_SNP [dm6]	A	G	2.362e^-5	0.598	UPSTREAM CR45519 INTERGENIC
3L	15995416	3L_15995416_SNP [dm3] 3L_16002316_SNP [dm6]	C	T	2.389e^-5	0.598	INTRON CG5830	TF binding site BDTNP1_TFBS_hb
3R	22000446	3R_22000446_SNP [dm3] 3R_26174724_SNP [dm6]	C	A	2.422e^-5	0.598	INTRON CG31323
2R	8441693	2R_8441693_SNP [dm3] 2R_12554188_SNP [dm6]	A	T	2.477e^-5	0.598	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3L	13376315	3L_13376315_SNP [dm3] 3L_13383215_SNP [dm6]	T	C	2.485e^-5	0.598	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11640624	3L_11640624_SNP [dm3] 3L_11647524_SNP [dm6]	T	C	2.524e^-5	0.598	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	15958246	3R_15958246_DEL [dm3] 3R_20132524_DEL [dm6]	GCG	G	2.583e^-5	0.598	INTERGENIC
3R	15399561	3R_15399561_SNP [dm3] 3R_19573839_SNP [dm6]	G	A	2.628e^-5	0.598	INTRON Dys
2R	4553206	2R_4553206_SNP [dm3] 2R_8665701_SNP [dm6]	C	T	2.636e^-5	0.598	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15245807	3R_15245807_SNP [dm3] 3R_19420085_SNP [dm6]	C	A	2.648e^-5	0.598	INTRON CG31221
3L	11640789	3L_11640789_SNP [dm3] 3L_11647689_SNP [dm6]	T	C	2.727e^-5	0.607	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3L	16483188	3L_16483188_SNP [dm3] 3L_16490088_SNP [dm6]	G	A	2.767e^-5	0.607	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11640156	3L_11640156_SNP [dm3] 3L_11647056_SNP [dm6]	A	C	2.799e^-5	0.607	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	12080007	3R_12080007_SNP [dm3] 3R_16254285_SNP [dm6]	G	A	2.840e^-5	0.607	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17644807	2R_17644807_SNP [dm3] 2R_21757302_SNP [dm6]	G	T	2.878e^-5	0.607	UPSTREAM Grx-1 INTERGENIC
2R	6395315	2R_6395315_DEL [dm3] 2R_10507810_DEL [dm6]	TT	T	2.885e^-5	0.607	UTR_3_PRIME lola INTRON lola
3R	19547001	3R_19547001_SNP [dm3] 3R_23721279_SNP [dm6]	A	C	2.964e^-5	0.607	INTRON CG10232
3R	18335711	3R_18335711_SNP [dm3] 3R_22509989_SNP [dm6]	G	T	2.971e^-5	0.607	SYNONYMOUS_CODING Octbeta1R
3L	14145749	3L_14145749_SNP [dm3] 3L_14152649_SNP [dm6]	T	A	2.979e^-5	0.607	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	6976977	2L_6976977_SNP [dm3] 2L_6976977_SNP [dm6]	C	T	3.139e^-5	0.633	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	13376252	3L_13376252_SNP [dm3] 3L_13383152_SNP [dm6]	C	G	3.275e^-5	0.642	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15245856	3R_15245856_SNP [dm3] 3R_19420134_SNP [dm6]	A	C	3.276e^-5	0.642	INTRON CG31221
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	3.301e^-5	0.642	INTRON nwk
3R	12591600	3R_12591600_SNP [dm3] 3R_16765878_SNP [dm6]	C	A	3.319e^-5	0.642	INTRON bxd EXON tre-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13375992	3L_13375992_SNP [dm3] 3L_13382892_SNP [dm6]	G	C	3.482e^-5	0.65	NON_SYNONYMOUS_CODING ImpL1 INTRON ImpL1	TF binding site mE1_TFBS_cad
2R	17032719	2R_17032719_SNP [dm3] 2R_21145214_SNP [dm6]	G	A	3.512e^-5	0.65	NON_SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1 UPSTREAM Hmg-2
3R	11040466	3R_11040466_SNP [dm3] 3R_15214744_SNP [dm6]	T	G	3.519e^-5	0.65	SYNONYMOUS_CODING CG4210 DOWNSTREAM SIDL
X	3085586	X_3085586_SNP [dm3] X_3191553_SNP [dm6]	C	T	3.577e^-5	0.65	INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18378436	3R_18378436_SNP [dm3] 3R_22552714_SNP [dm6]	A	T	3.649e^-5	0.65	UPSTREAM bond & 1 other INTRON bond
3R	15245823	3R_15245823_SNP [dm3] 3R_19420101_SNP [dm6]	C	T	3.650e^-5	0.65	INTRON CG31221
3R	26928852	3R_26928852_SNP [dm3] 3R_31103130_SNP [dm6]	T	A	3.656e^-5	0.65	INTERGENIC
3R	22984339	3R_22984339_SNP [dm3] 3R_27158617_SNP [dm6]	T	C	3.673e^-5	0.65	INTRON grass	TF binding site mE1_TFBS_chinmo
3L	9734537	3L_9734537_SNP [dm3] 3L_9741437_SNP [dm6]	T	A	3.684e^-5	0.65	INTRON CG42268 EXON CR44348
3R	15962237	3R_15962237_SNP [dm3] 3R_20136515_SNP [dm6]	A	T	3.751e^-5	0.65	INTERGENIC
3R	18188402	3R_18188402_SNP [dm3] 3R_22362680_SNP [dm6]	A	C	3.817e^-5	0.65	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9113407	3L_9113407_SNP [dm3] 3L_9120307_SNP [dm6]	A	T	3.865e^-5	0.65	INTRON bol
3R	15997833	3R_15997833_INS [dm3] 3R_20172111_INS [dm6]	G	GGCAGTAGATGGAAAG...	3.899e^-5	0.65	INTRON CG5023
3R	25782026	3R_25782026_SNP [dm3] 3R_29956304_SNP [dm6]	T	C	3.925e^-5	0.65	INTRON TkR99D
3R	11898025	3R_11898025_SNP [dm3] 3R_16072303_SNP [dm6]	G	A	3.953e^-5	0.65	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13939562	3L_13939562_SNP [dm3] 3L_13946462_SNP [dm6]	G	T	3.958e^-5	0.65	INTRON CG32137
3L	10699554	3L_10699554_SNP [dm3] 3L_10706454_SNP [dm6]	T	A	3.961e^-5	0.65	INTERGENIC
3R	16193090	3R_16193090_SNP [dm3] 3R_20367368_SNP [dm6]	A	C	4.043e^-5	0.65	INTERGENIC
3R	26288272	3R_26288272_DEL [dm3] 3R_30462550_DEL [dm6]	GGATTT	G	4.067e^-5	0.65	SPLICE_SITE_REGION CDase UTR_5_PRIME CDase INTRON CDase
3L	10886107	3L_10886107_SNP [dm3] 3L_10893007_SNP [dm6]	A	G	4.102e^-5	0.65	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	16036055	3R_16036055_SNP [dm3] 3R_20210333_SNP [dm6]	G	C	4.118e^-5	0.65	UPSTREAM CG17199 INTRON Nlg4
2L	17710653	2L_17710653_SNP [dm3] 2L_17710653_SNP [dm6]	A	T	4.127e^-5	0.65	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5180698	X_5180698_DEL [dm3] X_5286665_DEL [dm6]	TT	T	4.243e^-5	0.656	INTERGENIC
X	5399910	X_5399910_SNP [dm3] X_5505877_SNP [dm6]	T	C	4.329e^-5	0.656	UPSTREAM CR45519 INTERGENIC
3L	16733887	3L_16733887_SNP [dm3] 3L_16740787_SNP [dm6]	G	A	4.362e^-5	0.656	INTERGENIC
3R	16639728	3R_16639728_SNP [dm3] 3R_20814006_SNP [dm6]	C	T	4.430e^-5	0.656	SYNONYMOUS_CODING Fancd2
2L	2217978	2L_2217978_SNP [dm3] 2L_2217978_SNP [dm6]	C	T	4.461e^-5	0.656	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	4.482e^-5	0.656	INTRON kek6
3R	13669646	3R_13669646_SNP [dm3] 3R_17843924_SNP [dm6]	A	T	4.490e^-5	0.656	INTRON tinc
3R	26353092	3R_26353092_SNP [dm3] 3R_30527370_SNP [dm6]	A	T	4.530e^-5	0.656	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	16733934	3L_16733934_SNP [dm3] 3L_16740834_SNP [dm6]	C	G	4.556e^-5	0.656	INTERGENIC
3R	12590711	3R_12590711_SNP [dm3] 3R_16764989_SNP [dm6]	T	A	4.608e^-5	0.656	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	15900049	2R_15900049_SNP [dm3] 2R_20012544_SNP [dm6]	G	A	4.642e^-5	0.656	INTERGENIC	TF binding site mE1_TFBS_run
3R	26928848	3R_26928848_SNP [dm3] 3R_31103126_SNP [dm6]	C	G	4.692e^-5	0.656	INTERGENIC
3L	16148592	3L_16148592_INS [dm3] 3L_16155492_INS [dm6]	A	AAGTTTAGTTCGTC...	4.707e^-5	0.656	INTRON CG5151
3L	15889476	3L_15889476_SNP [dm3] 3L_15896376_SNP [dm6]	T	G	4.719e^-5	0.656	INTRON pHCl
3R	22984209	3R_22984209_SNP [dm3] 3R_27158487_SNP [dm6]	A	C	4.719e^-5	0.656	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19601363	3R_19601363_SNP [dm3] 3R_23775641_SNP [dm6]	C	T	4.739e^-5	0.656	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26560871	3R_26560871_SNP [dm3] 3R_30735149_SNP [dm6]	C	T	4.758e^-5	0.656	INTERGENIC
3L	14716920	3L_14716920_SNP [dm3] 3L_14723820_SNP [dm6]	T	A	4.840e^-5	0.662	INTRON ome
3L	13376135	3L_13376135_SNP [dm3] 3L_13383035_SNP [dm6]	T	C	4.870e^-5	0.662	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
3R	18188256	3R_18188256_SNP [dm3] 3R_22362534_SNP [dm6]	C	T	4.972e^-5	0.665	UPSTREAM CG7071 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2095240	3L_2095240_SNP [dm3] 3L_2095240_SNP [dm6]	T	G	5.012e^-5	0.665	NON_SYNONYMOUS_CODING sls
2L	16095101	2L_16095101_SNP [dm3] 2L_16095101_SNP [dm6]	A	G	5.035e^-5	0.665	SYNONYMOUS_CODING CG4891
3R	18188166	3R_18188166_DEL [dm3] 3R_22362444_DEL [dm6]	TACTGGTTTTATCAGAT...	T	5.098e^-5	0.665	UPSTREAM CG7071 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18771566	3R_18771566_SNP [dm3] 3R_22945844_SNP [dm6]	G	A	5.106e^-5	0.665	INTRON klg	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	660573	3L_660573_SNP [dm3] 3L_660573_SNP [dm6]	C	T	5.137e^-5	0.665	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19657251	3R_19657251_SNP [dm3] 3R_23831529_SNP [dm6]	C	G	5.159e^-5	0.665	INTRON CG34355
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	5.178e^-5	0.665	INTERGENIC
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	5.229e^-5	0.667	INTRON klg	TF binding site mE1_TFBS_chinmo
2L	722404	2L_722404_SNP [dm3] 2L_722404_SNP [dm6]	A	G	5.357e^-5	0.676	INTERGENIC
3R	23943375	3R_23943375_SNP [dm3] 3R_28117653_SNP [dm6]	A	T	5.378e^-5	0.676	INTERGENIC
3R	26291193	3R_26291193_SNP [dm3] 3R_30465471_SNP [dm6]	C	T	5.410e^-5	0.676	SYNONYMOUS_CODING CDase UPSTREAM PH4alphaEFB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	21096807	2L_21096807_SNP [dm3] 2L_21096807_SNP [dm6]	T	C	5.519e^-5	0.68	UPSTREAM CG34136 INTRON CG12050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10886085	3L_10886085_SNP [dm3] 3L_10892985_SNP [dm6]	T	G	5.530e^-5	0.68	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	11640915	3L_11640915_SNP [dm3] 3L_11647815_SNP [dm6]	A	G	5.614e^-5	0.68	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12608505	3L_12608505_SNP [dm3] 3L_12615405_SNP [dm6]	T	G	5.719e^-5	0.68	INTRON caup	TF binding site mE1_TFBS_cad
3L	9113341	3L_9113341_SNP [dm3] 3L_9120241_SNP [dm6]	A	C	5.738e^-5	0.68	INTRON bol
3R	25291514	3R_25291514_SNP [dm3] 3R_29465792_SNP [dm6]	A	G	5.739e^-5	0.68	INTRON Ptp99A
3R	15399255	3R_15399255_SNP [dm3] 3R_19573533_SNP [dm6]	G	A	5.769e^-5	0.68	INTRON Dys
3L	11739118	3L_11739118_SNP [dm3] 3L_11746018_SNP [dm6]	T	C	5.791e^-5	0.68	INTRON CG6024
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	5.797e^-5	0.68	INTRON jigr1
3R	22954179	3R_22954179_SNP [dm3] 3R_27128457_SNP [dm6]	G	A	5.798e^-5	0.68	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26079468	3R_26079468_SNP [dm3] 3R_30253746_SNP [dm6]	A	G	5.970e^-5	0.686	DOWNSTREAM CG9682 INTRON CG18404
X	6987755	X_6987755_SNP [dm3] X_7093722_SNP [dm6]	A	T	5.997e^-5	0.686	UPSTREAM Sxl INTRON Sxl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13376114	3L_13376114_SNP [dm3] 3L_13383014_SNP [dm6]	C	G	6.001e^-5	0.686	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
3R	14169042	3R_14169042_SNP [dm3] 3R_18343320_SNP [dm6]	T	C	6.149e^-5	0.686	INTRON CG15803
2R	8441692	2R_8441692_SNP [dm3] 2R_12554187_SNP [dm6]	C	A	6.166e^-5	0.686	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
X	2695636	X_2695636_SNP [dm3] X_2801603_SNP [dm6]	C	T	6.170e^-5	0.686	INTRON kirre
3R	15397080	3R_15397080_SNP [dm3] 3R_19571358_SNP [dm6]	T	G	6.174e^-5	0.686	INTRON Dys	TF binding site BDTNP1_TFBS_z
3R	26167583	3R_26167583_SNP [dm3] 3R_30341861_SNP [dm6]	G	T	6.217e^-5	0.686	INTRON hdc
X	19442183	X_19442183_MNP [dm3] X_19548150_MNP [dm6]	TCG	GAC	6.234e^-5	0.686	UPSTREAM CG32532 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18465532	2R_18465532_SNP [dm3] 2R_22578027_SNP [dm6]	C	T	6.346e^-5	0.686	INTRON dnr1
3R	11967596	3R_11967596_SNP [dm3] 3R_16141874_SNP [dm6]	A	T	6.356e^-5	0.686	NON_SYNONYMOUS_CODING Sb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10700125	3L_10700125_DEL [dm3] 3L_10707025_DEL [dm6]	CA	G	6.368e^-5	0.686	INTERGENIC
3L	11640519	3L_11640519_SNP [dm3] 3L_11647419_SNP [dm6]	T	C	6.402e^-5	0.686	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	6.467e^-5	0.686	INTERGENIC
3R	26088476	3R_26088476_SNP [dm3] 3R_30262754_SNP [dm6]	C	T	6.545e^-5	0.686	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	19139394	2R_19139394_SNP [dm3] 2R_23251871_SNP [dm6]	A	C	6.642e^-5	0.686	INTERGENIC
2R	12871276	2R_12871276_INS [dm3] 2R_16983771_INS [dm6]	C	TA	6.721e^-5	0.686	INTRON Cbp53E
3L	16721232	3L_16721232_SNP [dm3] 3L_16728132_SNP [dm6]	A	G	6.821e^-5	0.686	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	23765906	3L_23765906_SNP [dm3] 3L_23772806_SNP [dm6]	C	A	6.841e^-5	0.686	INTERGENIC
3R	22618580	3R_22618580_SNP [dm3] 3R_26792858_SNP [dm6]	G	A	6.842e^-5	0.686	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11640921	3L_11640921_SNP [dm3] 3L_11647821_SNP [dm6]	G	A	6.945e^-5	0.686	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	4552757	2R_4552757_SNP [dm3] 2R_8665252_SNP [dm6]	C	T	6.984e^-5	0.686	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14158476	3L_14158476_SNP [dm3] 3L_14165376_SNP [dm6]	A	G	7.000e^-5	0.686	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15332659	2L_15332659_SNP [dm3] 2L_15332659_SNP [dm6]	T	A	7.009e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Trl
3R	26079414	3R_26079414_SNP [dm3] 3R_30253692_SNP [dm6]	G	T	7.017e^-5	0.686	SYNONYMOUS_CODING CG18404 DOWNSTREAM CG9682
3L	1832489	3L_1832489_SNP [dm3] 3L_1832489_SNP [dm6]	A	G	7.052e^-5	0.686	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
3R	27008158	3R_27008158_SNP [dm3] 3R_31182436_SNP [dm6]	G	A	7.090e^-5	0.686	SYNONYMOUS_CODING mesh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9775644	X_9775644_SNP [dm3] X_9881611_SNP [dm6]	A	T	7.147e^-5	0.686	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	9775645	X_9775645_SNP [dm3] X_9881612_SNP [dm6]	A	T	7.147e^-5	0.686	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1832651	3L_1832651_SNP [dm3] 3L_1832651_SNP [dm6]	T	A	7.174e^-5	0.686	UTR_3_PRIME Cpr62Bb UPSTREAM Cpr62Ba
3R	18861912	3R_18861912_SNP [dm3] 3R_23036190_SNP [dm6]	A	T	7.242e^-5	0.686	UPSTREAM CG13833 INTERGENIC
3R	26167326	3R_26167326_SNP [dm3] 3R_30341604_SNP [dm6]	A	T	7.259e^-5	0.686	INTRON hdc
3R	26167667	3R_26167667_SNP [dm3] 3R_30341945_SNP [dm6]	T	A	7.259e^-5	0.686	INTRON hdc
2L	9335096	2L_9335096_SNP [dm3] 2L_9335096_SNP [dm6]	T	G	7.289e^-5	0.686	INTRON Eaat1
2R	8627626	2R_8627626_SNP [dm3] 2R_12740121_SNP [dm6]	T	G	7.323e^-5	0.686	INTRON CG42663
3L	3799878	3L_3799878_SNP [dm3] 3L_3799878_SNP [dm6]	G	C	7.392e^-5	0.686	INTRON CG32264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26079457	3R_26079457_SNP [dm3] 3R_30253735_SNP [dm6]	A	C	7.429e^-5	0.686	DOWNSTREAM CG9682 INTRON CG18404
3R	16036541	3R_16036541_SNP [dm3] 3R_20210819_SNP [dm6]	C	A	7.515e^-5	0.686	INTRON Nlg4
3R	15962243	3R_15962243_SNP [dm3] 3R_20136521_SNP [dm6]	G	T	7.532e^-5	0.686	INTERGENIC
3R	25782158	3R_25782158_SNP [dm3] 3R_29956436_SNP [dm6]	G	A	7.641e^-5	0.686	INTRON TkR99D
3R	15245868	3R_15245868_SNP [dm3] 3R_19420146_SNP [dm6]	A	G	7.654e^-5	0.686	INTRON CG31221
3R	18189024	3R_18189024_SNP [dm3] 3R_22363302_SNP [dm6]	G	A	7.672e^-5	0.686	UPSTREAM PSR INTRON CG7071 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	14239235	X_14239235_SNP [dm3] X_14345202_SNP [dm6]	G	A	7.703e^-5	0.686	INTRON dpr8
3L	3920223	3L_3920223_SNP [dm3] 3L_3920223_SNP [dm6]	C	T	7.727e^-5	0.686	INTRON Eip63F-1
3R	17007921	3R_17007921_SNP [dm3] 3R_21182199_SNP [dm6]	G	T	7.728e^-5	0.686	INTRON SNF4Agamma
3L	4029406	3L_4029406_SNP [dm3] 3L_4029406_SNP [dm6]	G	A	7.754e^-5	0.686	UPSTREAM Gr64c DOWNSTREAM Gr64a INTRON Gr64b & 1 other
3R	3226240	3R_3226240_SNP [dm3] 3R_7400518_SNP [dm6]	A	T	7.829e^-5	0.686	INTERGENIC
3R	27008170	3R_27008170_SNP [dm3] 3R_31182448_SNP [dm6]	A	C	7.849e^-5	0.686	SYNONYMOUS_CODING mesh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18574631	3L_18574631_SNP [dm3] 3L_18581531_SNP [dm6]	G	A	7.857e^-5	0.686	INTERGENIC
3R	22984236	3R_22984236_SNP [dm3] 3R_27158514_SNP [dm6]	G	A	7.881e^-5	0.686	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15863777	3R_15863777_SNP [dm3] 3R_20038055_SNP [dm6]	C	T	7.909e^-5	0.686	UTR_3_PRIME CG17193
3L	9619636	3L_9619636_SNP [dm3] 3L_9626536_SNP [dm6]	C	A	8.026e^-5	0.686	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
3R	15399518	3R_15399518_SNP [dm3] 3R_19573796_SNP [dm6]	C	T	8.047e^-5	0.686	INTRON Dys
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	8.085e^-5	0.686	INTRON jigr1
X	19441073	X_19441073_SNP [dm3] X_19547040_SNP [dm6]	C	A	8.124e^-5	0.686	INTRON CG32532	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	19572368	3R_19572368_SNP [dm3] 3R_23746646_SNP [dm6]	G	A	8.302e^-5	0.686	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7262664	3L_7262664_SNP [dm3] 3L_7269564_SNP [dm6]	T	G	8.358e^-5	0.686	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3R	14468698	3R_14468698_SNP [dm3] 3R_18642976_SNP [dm6]	C	T	8.361e^-5	0.686	INTRON qin
3L	11738941	3L_11738941_DEL [dm3] 3L_11745841_DEL [dm6]	TA	T	8.384e^-5	0.686	INTRON CG6024
2R	18594227	2R_18594227_SNP [dm3] 2R_22706722_SNP [dm6]	G	A	8.396e^-5	0.686	UPSTREAM Obp58d & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	16308101	3R_16308101_SNP [dm3] 3R_20482379_SNP [dm6]	T	A	8.409e^-5	0.686	INTRON Gfrl
3R	22984341	3R_22984341_SNP [dm3] 3R_27158619_SNP [dm6]	T	A	8.423e^-5	0.686	INTRON grass	TF binding site mE1_TFBS_chinmo
3R	27008173	3R_27008173_SNP [dm3] 3R_31182451_SNP [dm6]	A	G	8.437e^-5	0.686	SYNONYMOUS_CODING mesh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17665473	2R_17665473_SNP [dm3] 2R_21777968_SNP [dm6]	T	C	8.478e^-5	0.686	INTERGENIC
2L	1051890	2L_1051890_SNP [dm3] 2L_1051890_SNP [dm6]	C	G	8.495e^-5	0.686	UTR_3_PRIME S	TF binding site mE1_TFBS_cad
3R	12561978	3R_12561978_SNP [dm3] 3R_16736256_SNP [dm6]	A	G	8.500e^-5	0.686	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2R	17947219	2R_17947219_SNP [dm3] 2R_22059714_SNP [dm6]	C	A	8.507e^-5	0.686	NON_SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12806258	3R_12806258_SNP [dm3] 3R_16980536_SNP [dm6]	T	G	8.526e^-5	0.686	INTRON Ahcy89E
3R	22984180	3R_22984180_SNP [dm3] 3R_27158458_SNP [dm6]	G	A	8.539e^-5	0.686	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26079446	3R_26079446_SNP [dm3] 3R_30253724_SNP [dm6]	G	A	8.549e^-5	0.686	SPLICE_SITE_REGION CG18404 DOWNSTREAM CG9682 INTRON CG18404
2L	4297903	2L_4297903_SNP [dm3] 2L_4297903_SNP [dm6]	C	A	8.565e^-5	0.686	INTRON tutl
2L	17717102	2L_17717102_INS [dm3] 2L_17717102_INS [dm6]	T	TT	8.572e^-5	0.686	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26079364	3R_26079364_SNP [dm3] 3R_30253642_SNP [dm6]	A	G	8.621e^-5	0.686	DOWNSTREAM CG9682 INTRON CG18404
3L	1832610	3L_1832610_SNP [dm3] 3L_1832610_SNP [dm6]	G	A	8.625e^-5	0.686	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
3R	15245511	3R_15245511_SNP [dm3] 3R_19419789_SNP [dm6]	T	A	8.651e^-5	0.686	INTRON CG31221
3L	18723260	3L_18723260_SNP [dm3] 3L_18730160_SNP [dm6]	T	C	8.672e^-5	0.686	INTERGENIC
2L	2217987	2L_2217987_SNP [dm3] 2L_2217987_SNP [dm6]	C	T	8.774e^-5	0.686	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15076025	2R_15076025_SNP [dm3] 2R_19188520_SNP [dm6]	G	A	8.776e^-5	0.686	INTRON hppy
3L	11343239	3L_11343239_SNP [dm3] 3L_11350139_SNP [dm6]	G	T	8.779e^-5	0.686	UPSTREAM CR45251 INTERGENIC
3L	9113414	3L_9113414_SNP [dm3] 3L_9120314_SNP [dm6]	G	C	8.781e^-5	0.686	INTRON bol
3R	24665896	3R_24665896_SNP [dm3] 3R_28840174_SNP [dm6]	C	T	8.848e^-5	0.689	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12806155	3R_12806155_SNP [dm3] 3R_16980433_SNP [dm6]	A	T	8.887e^-5	0.689	INTRON Ahcy89E
2L	15098605	2L_15098605_SNP [dm3] 2L_15098605_SNP [dm6]	T	C	8.961e^-5	0.692	INTERGENIC
2L	21901075	2L_21901075_SNP [dm3] 2L_21901075_SNP [dm6]	A	T	9.086e^-5	0.692	INTERGENIC
3L	3551261	3L_3551261_DEL [dm3] 3L_3551261_DEL [dm6]	CATC	C	9.137e^-5	0.692	INTRON Eip63E
2R	16018961	2R_16018961_SNP [dm3] 2R_20131456_SNP [dm6]	T	C	9.148e^-5	0.692	INTERGENIC
3L	5567614	3L_5567614_SNP [dm3] 3L_5574514_SNP [dm6]	A	T	9.194e^-5	0.692	INTRON Msr-110
3L	5567661	3L_5567661_SNP [dm3] 3L_5574561_SNP [dm6]	C	T	9.207e^-5	0.692	INTRON Msr-110
X	6984954	X_6984954_SNP [dm3] X_7090921_SNP [dm6]	A	C	9.319e^-5	0.692	INTRON Sxl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb
2L	10906408	2L_10906408_SNP [dm3] 2L_10906408_SNP [dm6]	C	T	9.362e^-5	0.692	UTR_3_PRIME CG7309
3R	14760219	3R_14760219_SNP [dm3] 3R_18934497_SNP [dm6]	T	C	9.408e^-5	0.692	INTRON CG42613
3R	12793568	3R_12793568_SNP [dm3] 3R_16967846_SNP [dm6]	C	A	9.410e^-5	0.692	INTRON Abd-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13618840	X_13618840_SNP [dm3] X_13724807_SNP [dm6]	A	G	9.442e^-5	0.692	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10655690	2L_10655690_SNP [dm3] 2L_10655690_SNP [dm6]	T	A	9.529e^-5	0.692	INTERGENIC
X	1592178	X_1592178_SNP [dm3] X_1698145_SNP [dm6]	A	T	9.582e^-5	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14239190	X_14239190_SNP [dm3] X_14345157_SNP [dm6]	G	T	9.635e^-5	0.692	INTRON dpr8
3L	3920233	3L_3920233_SNP [dm3] 3L_3920233_SNP [dm6]	G	A	9.703e^-5	0.692	INTRON Eip63F-1
3L	23175201	3L_23175201_SNP [dm3] 3L_23182101_SNP [dm6]	A	T	9.753e^-5	0.692	INTRON CG34031	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15962515	3R_15962515_SNP [dm3] 3R_20136793_SNP [dm6]	C	G	9.818e^-5	0.692	INTERGENIC
X	7453654	X_7453654_SNP [dm3] X_7559621_SNP [dm6]	T	C	9.832e^-5	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	9482208	2R_9482208_SNP [dm3] 2R_13594703_SNP [dm6]	G	A	9.838e^-5	0.692	NON_SYNONYMOUS_CODING CG6197	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	27133478	3R_27133478_SNP [dm3] 3R_31307756_SNP [dm6]	C	G	9.845e^-5	0.692	INTERGENIC
3R	12806238	3R_12806238_SNP [dm3] 3R_16980516_SNP [dm6]	C	G	9.900e^-5	0.692	INTRON Ahcy89E
2R	10484055	2R_10484055_SNP [dm3] 2R_14596550_SNP [dm6]	A	G	1.007e^-4	0.692	SPLICE_SITE_REGION RpI1 DOWNSTREAM CG12869 INTRON RpI1	TF binding site mE1_TFBS_cad
3L	18574630	3L_18574630_SNP [dm3] 3L_18581530_SNP [dm6]	A	C	1.009e^-4	0.692	INTERGENIC
3L	4262800	3L_4262800_DEL [dm3] 3L_4262800_DEL [dm6]	TC	T	1.020e^-4	0.692	UTR_5_PRIME VhaM9.7-a UPSTREAM CG11586 & 1 other INTRON VhaM9.7-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	5032128	2L_5032128_SNP [dm3] 2L_5032128_SNP [dm6]	T	C	1.030e^-4	0.692	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13417578	3R_13417578_SNP [dm3] 3R_17591856_SNP [dm6]	T	A	1.031e^-4	0.692	INTERGENIC
3L	1256888	3L_1256888_SNP [dm3] 3L_1256888_SNP [dm6]	A	G	1.038e^-4	0.692	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
3R	12588280	3R_12588280_SNP [dm3] 3R_16762558_SNP [dm6]	A	G	1.043e^-4	0.692	DOWNSTREAM tre-3 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	26167445	3R_26167445_SNP [dm3] 3R_30341723_SNP [dm6]	A	C	1.043e^-4	0.692	INTRON hdc
3R	26518013	3R_26518013_SNP [dm3] 3R_30692291_SNP [dm6]	G	A	1.046e^-4	0.692	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2122756	3L_2122756_INS [dm3] 3L_2122756_INS [dm6]	C	CT	1.054e^-4	0.692	UTR_3_PRIME zormin INTRON zormin
3R	12793552	3R_12793552_SNP [dm3] 3R_16967830_SNP [dm6]	T	C	1.061e^-4	0.692	INTRON Abd-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16564015	3R_16564015_SNP [dm3] 3R_20738293_SNP [dm6]	G	T	1.063e^-4	0.692	NON_SYNONYMOUS_CODING CG17267 UTR_3_PRIME cdc2c DOWNSTREAM cdc2c
3R	13784701	3R_13784701_SNP [dm3] 3R_17958979_SNP [dm6]	C	T	1.071e^-4	0.692	INTRON cpo
X	7318127	X_7318127_SNP [dm3] X_7424094_SNP [dm6]	A	C	1.076e^-4	0.692	DOWNSTREAM CG15036 INTERGENIC
2L	18387264	2L_18387264_SNP [dm3] 2L_18387264_SNP [dm6]	A	C	1.080e^-4	0.692	DOWNSTREAM Fas3 INTRON Fas3
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	1.085e^-4	0.692	INTRON nwk
3R	12939382	3R_12939382_SNP [dm3] 3R_17113660_SNP [dm6]	C	T	1.087e^-4	0.692	INTRON cher
3R	27451779	3R_27451779_SNP [dm3] 3R_31626057_SNP [dm6]	T	A	1.089e^-4	0.692	INTRON kek6
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	1.093e^-4	0.692	INTRON Octbeta2R
3L	1832484	3L_1832484_SNP [dm3] 3L_1832484_SNP [dm6]	T	A	1.096e^-4	0.692	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
2R	15900062	2R_15900062_SNP [dm3] 2R_20012557_SNP [dm6]	A	C	1.098e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_run
2R	8494403	2R_8494403_SNP [dm3] 2R_12606898_SNP [dm6]	G	C	1.106e^-4	0.692	INTRON Amph
3R	19560710	3R_19560710_SNP [dm3] 3R_23734988_SNP [dm6]	A	G	1.110e^-4	0.692	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26353159	3R_26353159_SNP [dm3] 3R_30527437_SNP [dm6]	A	G	1.111e^-4	0.692	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	18726718	3R_18726718_SNP [dm3] 3R_22900996_SNP [dm6]	G	A	1.112e^-4	0.692	INTRON klg
3R	10225964	3R_10225964_SNP [dm3] 3R_14400242_SNP [dm6]	G	A	1.119e^-4	0.692	INTRON cv-c	TF binding site mE1_TFBS_Trl
3L	16731335	3L_16731335_SNP [dm3] 3L_16738235_SNP [dm6]	C	T	1.126e^-4	0.692	INTRON CG9701
X	14158451	X_14158451_SNP [dm3] X_14264418_SNP [dm6]	C	T	1.135e^-4	0.692	SYNONYMOUS_CODING CG1461 DOWNSTREAM CG13404
3R	26079599	3R_26079599_SNP [dm3] 3R_30253877_SNP [dm6]	T	C	1.135e^-4	0.692	NON_SYNONYMOUS_CODING CG18404
3R	21357075	3R_21357075_SNP [dm3] 3R_25531353_SNP [dm6]	A	G	1.141e^-4	0.692	INTRON msi
3L	16721243	3L_16721243_DEL [dm3] 3L_16728143_DEL [dm6]	TATT	T	1.141e^-4	0.692	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	12043698	2L_12043698_SNP [dm3] 2L_12043698_SNP [dm6]	G	A	1.141e^-4	0.692	UTR_5_PRIME CG6785 UPSTREAM CG6785 INTRON CG6785	TF binding site BDTNP1_TFBS_dl
3R	16616726	3R_16616726_SNP [dm3] 3R_20791004_SNP [dm6]	A	G	1.144e^-4	0.692	INTRON Syp
3L	11641089	3L_11641089_SNP [dm3] 3L_11647989_SNP [dm6]	A	G	1.144e^-4	0.692	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18771723	3R_18771723_SNP [dm3] 3R_22946001_SNP [dm6]	T	A	1.148e^-4	0.692	INTRON klg	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11641860	3L_11641860_SNP [dm3] 3L_11648760_SNP [dm6]	G	T	1.148e^-4	0.692	UTR_5_PRIME CG7339 UPSTREAM RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13669127	3R_13669127_SNP [dm3] 3R_17843405_SNP [dm6]	G	A	1.157e^-4	0.692	INTRON tinc
3R	16760028	3R_16760028_SNP [dm3] 3R_20934306_SNP [dm6]	A	T	1.160e^-4	0.692	INTRON CG31191
3R	2790444	3R_2790444_SNP [dm3] 3R_6964722_SNP [dm6]	T	A	1.164e^-4	0.692	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	5343634	X_5343634_INS [dm3] X_5449601_INS [dm6]	T	TT	1.165e^-4	0.692	INTRON SPR
3L	11641472	3L_11641472_SNP [dm3] 3L_11648372_SNP [dm6]	G	T	1.166e^-4	0.692	UTR_5_PRIME RIOK1 UPSTREAM CG7339 INTRON RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11641859	3L_11641859_SNP [dm3] 3L_11648759_SNP [dm6]	G	T	1.174e^-4	0.692	START_GAINED CG7339 UTR_5_PRIME CG7339 UPSTREAM RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17110619	2R_17110619_SNP [dm3] 2R_21223114_SNP [dm6]	C	T	1.179e^-4	0.692	SYNONYMOUS_CODING ASPP
3R	23157209	3R_23157209_SNP [dm3] 3R_27331487_SNP [dm6]	T	A	1.179e^-4	0.692	UPSTREAM CG3330 INTERGENIC
2L	10869261	2L_10869261_SNP [dm3] 2L_10869261_SNP [dm6]	G	C	1.181e^-4	0.692	UPSTREAM CG12517 INTERGENIC
3R	15397249	3R_15397249_SNP [dm3] 3R_19571527_SNP [dm6]	G	T	1.181e^-4	0.692	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	22995658	3L_22995658_SNP [dm3] 3L_23002558_SNP [dm6]	A	G	1.184e^-4	0.692	INTRON nrm
3L	3983458	3L_3983458_SNP [dm3] 3L_3983458_SNP [dm6]	T	C	1.197e^-4	0.692	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13448847	2R_13448847_SNP [dm3] 2R_17561342_SNP [dm6]	C	A	1.206e^-4	0.692	INTRON Klp54D
2L	1569415	2L_1569415_SNP [dm3] 2L_1569415_SNP [dm6]	A	G	1.207e^-4	0.692	INTRON haf
3L	23137597	3L_23137597_SNP [dm3] 3L_23144497_SNP [dm6]	G	A	1.215e^-4	0.692	INTERGENIC
3R	21956164	3R_21956164_SNP [dm3] 3R_26130442_SNP [dm6]	T	G	1.216e^-4	0.692	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	1.222e^-4	0.692	INTRON nwk
3R	20877904	3R_20877904_SNP [dm3] 3R_25052182_SNP [dm6]	A	T	1.224e^-4	0.692	INTRON CG11791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3R	16410907	3R_16410907_SNP [dm3] 3R_20585185_SNP [dm6]	T	G	1.224e^-4	0.692	SYNONYMOUS_CODING CG16953 DOWNSTREAM Sep2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9113299	3L_9113299_SNP [dm3] 3L_9120199_SNP [dm6]	C	T	1.225e^-4	0.692	INTRON bol
X	3922952	X_3922952_SNP [dm3] X_4028919_SNP [dm6]	T	A	1.228e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14604556	2L_14604556_SNP [dm3] 2L_14604556_SNP [dm6]	G	A	1.230e^-4	0.692	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5074268	2R_5074268_SNP [dm3] 2R_9186763_SNP [dm6]	A	C	1.241e^-4	0.692	UTR_3_PRIME CG8026 & 1 other UPSTREAM ltd DOWNSTREAM CG8026
2R	9509957	2R_9509957_SNP [dm3] 2R_13622452_SNP [dm6]	G	A	1.244e^-4	0.692	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	18723259	3L_18723259_SNP [dm3] 3L_18730159_SNP [dm6]	T	A	1.247e^-4	0.692	INTERGENIC
3R	22985965	3R_22985965_SNP [dm3] 3R_27160243_SNP [dm6]	T	C	1.255e^-4	0.692	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
2L	13126861	2L_13126861_SNP [dm3] 2L_13126861_SNP [dm6]	G	C	1.258e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11406436	3L_11406436_SNP [dm3] 3L_11413336_SNP [dm6]	G	A	1.260e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11406437	3L_11406437_SNP [dm3] 3L_11413337_SNP [dm6]	C	T	1.260e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2217981	2L_2217981_SNP [dm3] 2L_2217981_SNP [dm6]	C	T	1.262e^-4	0.692	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14155283	3L_14155283_DEL [dm3] 3L_14162183_DEL [dm6]	TGT	T	1.268e^-4	0.692	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23590309	3R_23590309_SNP [dm3] 3R_27764587_SNP [dm6]	C	T	1.271e^-4	0.692	INTERGENIC
3L	16733947	3L_16733947_SNP [dm3] 3L_16740847_SNP [dm6]	G	T	1.272e^-4	0.692	INTERGENIC
3R	26712458	3R_26712458_SNP [dm3] 3R_30886736_SNP [dm6]	G	C	1.283e^-4	0.692	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad
3L	14839350	3L_14839350_SNP [dm3] 3L_14846250_SNP [dm6]	A	G	1.285e^-4	0.692	INTRON CG17839
3L	13376120	3L_13376120_SNP [dm3] 3L_13383020_SNP [dm6]	A	C	1.285e^-4	0.692	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
X	3157578	X_3157578_SNP [dm3] X_3263545_SNP [dm6]	C	T	1.286e^-4	0.692	INTRON dnc
3L	14155274	3L_14155274_SNP [dm3] 3L_14162174_SNP [dm6]	G	A	1.286e^-4	0.692	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25675115	3R_25675115_SNP [dm3] 3R_29849393_SNP [dm6]	G	A	1.288e^-4	0.692	SPLICE_SITE_REGION Cad99C INTRON Cad99C	TF binding site mE1_TFBS_cad
2L	13851909	2L_13851909_SNP [dm3] 2L_13851909_SNP [dm6]	C	T	1.296e^-4	0.692	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7237596	2L_7237596_SNP [dm3] 2L_7237596_SNP [dm6]	C	T	1.296e^-4	0.692	INTRON Ndae1
3L	16483145	3L_16483145_SNP [dm3] 3L_16490045_SNP [dm6]	C	T	1.303e^-4	0.692	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	21094244	2L_21094244_SNP [dm3] 2L_21094244_SNP [dm6]	T	A	1.314e^-4	0.692	DOWNSTREAM CG12050 INTRON CG14397
X	6636796	X_6636796_SNP [dm3] X_6742763_SNP [dm6]	C	T	1.314e^-4	0.692	UPSTREAM snoRNA:Psi28S-3436b DOWNSTREAM snoRNA:Psi28S-1060 & 1 other INTRON RpL17 EXON snoRNA:Psi28S-3436a
2R	8558980	2R_8558980_SNP [dm3] 2R_12671475_SNP [dm6]	C	T	1.325e^-4	0.692	NON_SYNONYMOUS_CODING CG42708 INTRON CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6300454	2L_6300454_DEL [dm3] 2L_6300454_DEL [dm6]	TGAGCCCAATT...	T	1.344e^-4	0.692	INTRON Ddr
X	9107630	X_9107630_SNP [dm3] X_9213597_SNP [dm6]	A	C	1.349e^-4	0.692	INTERGENIC
3R	15399577	3R_15399577_SNP [dm3] 3R_19573855_SNP [dm6]	G	A	1.349e^-4	0.692	INTRON Dys
3L	10886108	3L_10886108_SNP [dm3] 3L_10893008_SNP [dm6]	A	T	1.356e^-4	0.692	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	25782028	3R_25782028_SNP [dm3] 3R_29956306_SNP [dm6]	T	G	1.367e^-4	0.692	INTRON TkR99D
3L	3668886	3L_3668886_SNP [dm3] 3L_3668886_SNP [dm6]	T	C	1.371e^-4	0.692	INTERGENIC
2L	10022654	2L_10022654_SNP [dm3] 2L_10022654_SNP [dm6]	G	A	1.373e^-4	0.692	INTERGENIC
3R	16948487	3R_16948487_SNP [dm3] 3R_21122765_SNP [dm6]	T	G	1.374e^-4	0.692	INTRON slmb
2L	2654358	2L_2654358_SNP [dm3] 2L_2654358_SNP [dm6]	T	A	1.376e^-4	0.692	SYNONYMOUS_CODING Or23a DOWNSTREAM Prosbeta4R1
3R	12385651	3R_12385651_DEL [dm3] 3R_16559929_DEL [dm6]	TTTGCCGATATT...	T	1.377e^-4	0.692	INTRON CG42342	TF binding site BDTNP1_TFBS_twi
2L	1087562	2L_1087562_SNP [dm3] 2L_1087562_SNP [dm6]	A	G	1.378e^-4	0.692	INTRON CG4629
3R	26699987	3R_26699987_SNP [dm3] 3R_30874265_SNP [dm6]	A	G	1.381e^-4	0.692	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17673670	2L_17673670_SNP [dm3] 2L_17673670_SNP [dm6]	T	A	1.381e^-4	0.692	INTRON CadN
2L	3530923	2L_3530923_SNP [dm3] 2L_3530923_SNP [dm6]	G	A	1.381e^-4	0.692	SYNONYMOUS_CODING Che-13 UPSTREAM Spindly	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8642024	2L_8642024_SNP [dm3] 2L_8642024_SNP [dm6]	G	A	1.385e^-4	0.692	INTRON Sema-1a
3R	26177514	3R_26177514_SNP [dm3] 3R_30351792_SNP [dm6]	G	A	1.387e^-4	0.692	INTRON hdc
3L	16150759	3L_16150759_SNP [dm3] 3L_16157659_SNP [dm6]	C	T	1.389e^-4	0.692	INTRON CG5151
2R	12871345	2R_12871345_SNP [dm3] 2R_16983840_SNP [dm6]	A	G	1.392e^-4	0.692	INTRON Cbp53E
2L	16798584	2L_16798584_SNP [dm3] 2L_16798584_SNP [dm6]	C	G	1.395e^-4	0.692	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
3L	17935304	3L_17935304_SNP [dm3] 3L_17942204_SNP [dm6]	C	T	1.395e^-4	0.692	INTRON CG43174
3R	24541698	3R_24541698_SNP [dm3] 3R_28715976_SNP [dm6]	C	A	1.396e^-4	0.692	SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16721253	3L_16721253_DEL [dm3] 3L_16728153_DEL [dm6]	ATCGTATTTAAATCCTATGT...	A	1.398e^-4	0.692	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	1.406e^-4	0.692	INTRON nwk
2R	8991643	2R_8991643_SNP [dm3] 2R_13104138_SNP [dm6]	A	C	1.409e^-4	0.692	UTR_5_PRIME CG44341
3R	11603550	3R_11603550_SNP [dm3] 3R_15777828_SNP [dm6]	T	C	1.409e^-4	0.692	DOWNSTREAM CG4525 INTERGENIC
3L	11344044	3L_11344044_SNP [dm3] 3L_11350944_SNP [dm6]	T	C	1.411e^-4	0.692	INTERGENIC
3R	25161058	3R_25161058_SNP [dm3] 3R_29335336_SNP [dm6]	T	A	1.412e^-4	0.692	INTERGENIC
2R	17665506	2R_17665506_SNP [dm3] 2R_21778001_SNP [dm6]	G	A	1.414e^-4	0.692	INTERGENIC
2R	8558269	2R_8558269_INS [dm3] 2R_12670764_INS [dm6]	A	ATGTA	1.421e^-4	0.692	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv
2L	14595438	2L_14595438_SNP [dm3] 2L_14595438_SNP [dm6]	C	A	1.425e^-4	0.692	INTERGENIC
3R	22493956	3R_22493956_SNP [dm3] 3R_26668234_SNP [dm6]	G	A	1.425e^-4	0.692	INTRON beat-VII	TF binding site mE1_TFBS_inv
3R	12589755	3R_12589755_SNP [dm3] 3R_16764033_SNP [dm6]	A	G	1.425e^-4	0.692	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15393967	3R_15393967_SNP [dm3] 3R_19568245_SNP [dm6]	A	G	1.433e^-4	0.692	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
2R	9161850	2R_9161850_DEL [dm3] 2R_13274345_DEL [dm6]	TAC	T	1.434e^-4	0.692	INTRON Dh31-R	TF binding site mE1_TFBS_cad
2R	5074311	2R_5074311_SNP [dm3] 2R_9186806_SNP [dm6]	C	T	1.435e^-4	0.692	UTR_3_PRIME CG8026 & 1 other UPSTREAM ltd DOWNSTREAM CG8026
2R	10484812	2R_10484812_SNP [dm3] 2R_14597307_SNP [dm6]	C	A	1.437e^-4	0.692	SYNONYMOUS_CODING RpI1
3L	3911936	3L_3911936_SNP [dm3] 3L_3911936_SNP [dm6]	T	C	1.447e^-4	0.692	INTRON Eip63F-1
3R	16036178	3R_16036178_SNP [dm3] 3R_20210456_SNP [dm6]	T	C	1.461e^-4	0.692	UPSTREAM CG17199 INTRON Nlg4
3R	15397174	3R_15397174_SNP [dm3] 3R_19571452_SNP [dm6]	A	C	1.462e^-4	0.692	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	18723255	3L_18723255_SNP [dm3] 3L_18730155_SNP [dm6]	T	G	1.464e^-4	0.692	INTERGENIC
2L	1277166	2L_1277166_SNP [dm3] 2L_1277166_SNP [dm6]	T	A	1.472e^-4	0.692	INTRON robo3
2R	10513616	2R_10513616_SNP [dm3] 2R_14626111_SNP [dm6]	G	A	1.472e^-4	0.692	INTERGENIC
X	19439630	X_19439630_SNP [dm3] X_19545597_SNP [dm6]	T	A	1.474e^-4	0.692	UTR_5_PRIME CG32532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24669376	3R_24669376_SNP [dm3] 3R_28843654_SNP [dm6]	G	T	1.477e^-4	0.692	INTRON Apc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8355290	3L_8355290_SNP [dm3] 3L_8362190_SNP [dm6]	T	C	1.477e^-4	0.692	INTERGENIC
3R	16030025	3R_16030025_SNP [dm3] 3R_20204303_SNP [dm6]	A	T	1.479e^-4	0.692	UPSTREAM Nlg4 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15054382	2R_15054382_SNP [dm3] 2R_19166877_SNP [dm6]	G	A	1.494e^-4	0.692	INTRON CG10737	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5074106	2R_5074106_SNP [dm3] 2R_9186601_SNP [dm6]	C	T	1.499e^-4	0.692	UPSTREAM ltd DOWNSTREAM CG8026 & 1 other INTERGENIC
X	19288714	X_19288714_INS [dm3] X_19394681_INS [dm6]	T	TGT	1.500e^-4	0.692	INTRON kek5
3R	25534216	3R_25534216_SNP [dm3] 3R_29708494_SNP [dm6]	G	A	1.502e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14839370	3L_14839370_SNP [dm3] 3L_14846270_SNP [dm6]	G	A	1.513e^-4	0.692	INTRON CG17839
2L	17737486	2L_17737486_SNP [dm3] 2L_17737486_SNP [dm6]	G	C	1.514e^-4	0.692	INTRON CadN	TF binding site BDTNP1_TFBS_twi
3R	18771993	3R_18771993_SNP [dm3] 3R_22946271_SNP [dm6]	G	C	1.514e^-4	0.692	INTRON klg
2L	2215090	2L_2215090_SNP [dm3] 2L_2215090_SNP [dm6]	C	T	1.516e^-4	0.692	SYNONYMOUS_CODING CG34174 UTR_3_PRIME CG10880 UPSTREAM Uch
3R	23544971	3R_23544971_SNP [dm3] 3R_27719249_SNP [dm6]	C	T	1.520e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15393509	3R_15393509_SNP [dm3] 3R_19567787_SNP [dm6]	A	G	1.526e^-4	0.692	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15750585	3R_15750585_SNP [dm3] 3R_19924863_SNP [dm6]	G	A	1.526e^-4	0.692	INTRON CG4462
3R	3505945	3R_3505945_SNP [dm3] 3R_7680223_SNP [dm6]	C	T	1.552e^-4	0.692	INTRON Nlg1
3R	22984190	3R_22984190_SNP [dm3] 3R_27158468_SNP [dm6]	A	T	1.553e^-4	0.692	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3944828	2L_3944828_SNP [dm3] 2L_3944828_SNP [dm6]	G	C	1.556e^-4	0.692	INTRON fred
2R	18591200	2R_18591200_SNP [dm3] 2R_22703695_SNP [dm6]	A	T	1.561e^-4	0.692	UTR_3_PRIME Obp59a INTRON CG30259
3R	25947961	3R_25947961_SNP [dm3] 3R_30122239_SNP [dm6]	G	A	1.565e^-4	0.692	SYNONYMOUS_CODING CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11656651	2L_11656651_SNP [dm3] 2L_11656651_SNP [dm6]	C	T	1.566e^-4	0.692	UPSTREAM CG43167 INTERGENIC
X	12824246	X_12824246_SNP [dm3] X_12930213_SNP [dm6]	T	C	1.567e^-4	0.692	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24823319	3R_24823319_SNP [dm3] 3R_28997597_SNP [dm6]	G	A	1.572e^-4	0.692	INTRON wat
3L	9113279	3L_9113279_SNP [dm3] 3L_9120179_SNP [dm6]	C	A	1.575e^-4	0.692	INTRON bol
3L	16721250	3L_16721250_SNP [dm3] 3L_16728150_SNP [dm6]	C	G	1.577e^-4	0.692	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	19547294	3R_19547294_SNP [dm3] 3R_23721572_SNP [dm6]	A	T	1.581e^-4	0.692	UTR_5_PRIME CG10232	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15889449	3L_15889449_SNP [dm3] 3L_15896349_SNP [dm6]	C	A	1.589e^-4	0.692	INTRON pHCl
3L	16483144	3L_16483144_SNP [dm3] 3L_16490044_SNP [dm6]	A	C	1.593e^-4	0.692	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	18771992	3R_18771992_SNP [dm3] 3R_22946270_SNP [dm6]	A	C	1.594e^-4	0.692	INTRON klg
3L	3801255	3L_3801255_SNP [dm3] 3L_3801255_SNP [dm6]	C	T	1.597e^-4	0.692	UTR_5_PRIME CG32264 INTRON CG32264
3R	18375722	3R_18375722_SNP [dm3] 3R_22550000_SNP [dm6]	C	A	1.600e^-4	0.692	UPSTREAM bond DOWNSTREAM CR44062 INTERGENIC
3L	9113362	3L_9113362_SNP [dm3] 3L_9120262_SNP [dm6]	C	T	1.601e^-4	0.692	INTRON bol
3R	14319807	3R_14319807_SNP [dm3] 3R_18494085_SNP [dm6]	T	A	1.604e^-4	0.692	INTRON fru
2L	17673911	2L_17673911_SNP [dm3] 2L_17673911_SNP [dm6]	A	C	1.606e^-4	0.692	INTRON CadN
3L	9579325	3L_9579325_SNP [dm3] 3L_9586225_SNP [dm6]	T	A	1.610e^-4	0.692	INTRON CG42673
3R	14319722	3R_14319722_SNP [dm3] 3R_18494000_SNP [dm6]	A	T	1.612e^-4	0.692	INTRON fru
2R	14208408	2R_14208408_SNP [dm3] 2R_18320903_SNP [dm6]	A	C	1.612e^-4	0.692	INTRON sbb
3L	13163607	3L_13163607_SNP [dm3] 3L_13170507_SNP [dm6]	C	G	1.613e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	22251650	3R_22251650_DEL [dm3] 3R_26425928_DEL [dm6]	CTGGATGCCTATCTTCATCA...	C	1.616e^-4	0.692	UPSTREAM CG6503 & 1 other INTRON CR31084
2L	6814462	2L_6814462_SNP [dm3] 2L_6814462_SNP [dm6]	T	A	1.617e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	22744204	3R_22744204_SNP [dm3] 3R_26918482_SNP [dm6]	A	G	1.633e^-4	0.692	INTRON sda
2L	11369034	2L_11369034_DEL [dm3] 2L_11369034_DEL [dm6]	TAATATTTTT	T	1.634e^-4	0.692	INTRON salr	TF binding site mE1_TFBS_cad
3R	15688747	3R_15688747_SNP [dm3] 3R_19863025_SNP [dm6]	C	T	1.636e^-4	0.692	SYNONYMOUS_CODING CG4572 DOWNSTREAM CG11447	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19310751	3R_19310751_SNP [dm3] 3R_23485029_SNP [dm6]	T	G	1.638e^-4	0.692	SYNONYMOUS_CODING Ir94g UPSTREAM CR44324	TF binding site mE1_TFBS_HSA
2L	630539	2L_630539_SNP [dm3] 2L_630539_SNP [dm6]	T	A	1.640e^-4	0.692	INTERGENIC
3R	10405567	3R_10405567_SNP [dm3] 3R_14579845_SNP [dm6]	A	T	1.643e^-4	0.692	INTRON stumps	TF binding site mE1_TFBS_Trl
3R	15851529	3R_15851529_SNP [dm3] 3R_20025807_SNP [dm6]	G	A	1.643e^-4	0.692	SYNONYMOUS_CODING psidin DOWNSTREAM CG4424	TF binding site mE1_TFBS_cad
2R	10504920	2R_10504920_SNP [dm3] 2R_14617415_SNP [dm6]	G	A	1.648e^-4	0.692	INTRON Su_var_2-HP2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	26079665	3R_26079665_SNP [dm3] 3R_30253943_SNP [dm6]	G	A	1.650e^-4	0.692	NON_SYNONYMOUS_CODING CG18404
3R	11603555	3R_11603555_SNP [dm3] 3R_15777833_SNP [dm6]	C	T	1.655e^-4	0.692	DOWNSTREAM CG4525 INTERGENIC
3R	11674396	3R_11674396_SNP [dm3] 3R_15848674_SNP [dm6]	G	T	1.657e^-4	0.692	DOWNSTREAM CG4546 INTRON cv-d
3R	18622405	3R_18622405_SNP [dm3] 3R_22796683_SNP [dm6]	T	A	1.660e^-4	0.692	INTERGENIC
3R	16036082	3R_16036082_SNP [dm3] 3R_20210360_SNP [dm6]	C	A	1.663e^-4	0.692	UPSTREAM CG17199 INTRON Nlg4
2L	21971542	2L_21971542_SNP [dm3] 2L_21971542_SNP [dm6]	C	T	1.675e^-4	0.692	INTERGENIC
3L	1250858	3L_1250858_SNP [dm3] 3L_1250858_SNP [dm6]	C	G	1.676e^-4	0.692	START_GAINED CG9129 UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
3R	18366278	3R_18366278_SNP [dm3] 3R_22540556_SNP [dm6]	A	G	1.681e^-4	0.692	UPSTREAM CG5326 INTRON CR45646
3L	9705632	3L_9705632_SNP [dm3] 3L_9712532_SNP [dm6]	A	C	1.682e^-4	0.692	INTRON SH3PX1	TF binding site mE1_TFBS_cnc
3L	10886120	3L_10886120_SNP [dm3] 3L_10893020_SNP [dm6]	C	A	1.684e^-4	0.692	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	26518291	3R_26518291_SNP [dm3] 3R_30692569_SNP [dm6]	G	A	1.686e^-4	0.692	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14327299	3R_14327299_SNP [dm3] 3R_18501577_SNP [dm6]	A	T	1.687e^-4	0.692	INTRON fru	TF binding site BDTNP1_TFBS_da
3R	25144974	3R_25144974_SNP [dm3] 3R_29319252_SNP [dm6]	A	G	1.689e^-4	0.692	SYNONYMOUS_CODING Cnx99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13728879	3R_13728879_SNP [dm3] 3R_17903157_SNP [dm6]	G	T	1.691e^-4	0.692	INTRON Rim
2R	10509999	2R_10509999_SNP [dm3] 2R_14622494_SNP [dm6]	T	C	1.699e^-4	0.692	UPSTREAM snoRNA:Me28S-U1848 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	17960882	3R_17960882_SNP [dm3] 3R_22135160_SNP [dm6]	T	G	1.701e^-4	0.692	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18581582	3R_18581582_SNP [dm3] 3R_22755860_SNP [dm6]	C	T	1.713e^-4	0.692	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16483138	3L_16483138_SNP [dm3] 3L_16490038_SNP [dm6]	T	G	1.714e^-4	0.692	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	1.715e^-4	0.692	INTRON nwk
2R	16230129	2R_16230129_SNP [dm3] 2R_20342624_SNP [dm6]	C	T	1.720e^-4	0.692	SYNONYMOUS_CODING CG16739
3L	4496786	3L_4496786_SNP [dm3] 3L_4496786_SNP [dm6]	T	A	1.726e^-4	0.692	DOWNSTREAM CG13721 INTERGENIC	TF binding site mE1_TFBS_inv
3R	27465648	3R_27465648_DEL [dm3] 3R_31639926_DEL [dm6]	CTCCTTCCGAGCC...	C	1.726e^-4	0.692	INTRON kek6	TF binding site mE1_TFBS_inv
3R	16960009	3R_16960009_SNP [dm3] 3R_21134287_SNP [dm6]	C	T	1.729e^-4	0.692	UTR_5_PRIME Ubpy UPSTREAM CG7009	TF binding site BDTNP1_TFBS_dl
3R	22954757	3R_22954757_SNP [dm3] 3R_27129035_SNP [dm6]	A	T	1.731e^-4	0.692	INTRON CG6051
3L	10535801	3L_10535801_SNP [dm3] 3L_10542701_SNP [dm6]	A	C	1.732e^-4	0.692	INTRON A2bp1
3L	9113436	3L_9113436_SNP [dm3] 3L_9120336_SNP [dm6]	T	G	1.738e^-4	0.692	INTRON bol
3L	11343019	3L_11343019_SNP [dm3] 3L_11349919_SNP [dm6]	T	C	1.739e^-4	0.692	UPSTREAM CR45251 INTERGENIC
3L	12467334	3L_12467334_INS [dm3] 3L_12474234_INS [dm6]	T	TT	1.742e^-4	0.692	UTR_3_PRIME CG10616 DOWNSTREAM CG10663
3R	26173377	3R_26173377_SNP [dm3] 3R_30347655_SNP [dm6]	G	T	1.743e^-4	0.692	INTRON hdc
3L	14556302	3L_14556302_SNP [dm3] 3L_14563202_SNP [dm6]	A	G	1.748e^-4	0.692	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1 transposable element FlyBase
2L	1009256	2L_1009256_SNP [dm3] 2L_1009256_SNP [dm6]	A	G	1.748e^-4	0.692	UTR_3_PRIME IA-2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	15245537	3R_15245537_SNP [dm3] 3R_19419815_SNP [dm6]	T	C	1.749e^-4	0.692	INTRON CG31221
2R	19009930	2R_19009930_SNP [dm3] 2R_23122407_SNP [dm6]	C	T	1.755e^-4	0.692	INTERGENIC
2R	8558278	2R_8558278_INS [dm3] 2R_12670773_INS [dm6]	C	CC	1.756e^-4	0.692	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	17032710	2R_17032710_SNP [dm3] 2R_21145205_SNP [dm6]	C	T	1.757e^-4	0.692	SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1 UPSTREAM Hmg-2
2R	8335617	2R_8335617_SNP [dm3] 2R_12448112_SNP [dm6]	A	T	1.759e^-4	0.692	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8991685	2R_8991685_SNP [dm3] 2R_13104180_SNP [dm6]	A	G	1.760e^-4	0.692	NON_SYNONYMOUS_CODING CG44341
3L	20787917	3L_20787917_SNP [dm3] 3L_20794817_SNP [dm6]	G	A	1.763e^-4	0.692	DOWNSTREAM CR43705 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	16226630	3R_16226630_SNP [dm3] 3R_20400908_SNP [dm6]	T	G	1.764e^-4	0.692	UTR_3_PRIME Gfrl INTRON Gfrl
3R	15997834	3R_15997834_INS [dm3] 3R_20172112_INS [dm6]	A	ACAGTAGATGGAAAGA...	1.770e^-4	0.692	INTRON CG5023
X	1592598	X_1592598_SNP [dm3] X_1698565_SNP [dm6]	G	A	1.775e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11255758	3R_11255758_INS [dm3] 3R_15430036_INS [dm6]	T	TTAACAT	1.776e^-4	0.692	INTRON CG6118
3R	20296218	3R_20296218_SNP [dm3] 3R_24470496_SNP [dm6]	T	C	1.776e^-4	0.692	DOWNSTREAM CG31128 INTERGENIC
2L	17710123	2L_17710123_SNP [dm3] 2L_17710123_SNP [dm6]	A	G	1.779e^-4	0.692	INTRON CadN
2L	15093340	2L_15093340_SNP [dm3] 2L_15093340_SNP [dm6]	G	A	1.781e^-4	0.692	INTRON CG15270
2L	1053347	2L_1053347_SNP [dm3] 2L_1053347_SNP [dm6]	A	G	1.781e^-4	0.692	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14836873	3R_14836873_SNP [dm3] 3R_19011151_SNP [dm6]	T	A	1.787e^-4	0.692	INTRON gukh	TF binding site mE1_TFBS_cad
X	5830143	X_5830143_SNP [dm3] X_5936110_SNP [dm6]	T	A	1.793e^-4	0.692	INTRON CG3726
3L	11452214	3L_11452214_SNP [dm3] 3L_11459114_SNP [dm6]	T	C	1.796e^-4	0.692	SYNONYMOUS_CODING CG7551 UPSTREAM CG12289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7454106	X_7454106_SNP [dm3] X_7560073_SNP [dm6]	G	A	1.803e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22983147	3R_22983147_SNP [dm3] 3R_27157425_SNP [dm6]	A	G	1.813e^-4	0.692	UTR_3_PRIME Men-b UPSTREAM grass DOWNSTREAM Men-b	TF binding site mE1_TFBS_Trl
3R	16616779	3R_16616779_SNP [dm3] 3R_20791057_SNP [dm6]	T	C	1.817e^-4	0.692	INTRON Syp
2L	5446278	2L_5446278_SNP [dm3] 2L_5446278_SNP [dm6]	C	G	1.829e^-4	0.692	INTERGENIC
3R	21392724	3R_21392724_SNP [dm3] 3R_25567002_SNP [dm6]	C	T	1.829e^-4	0.692	INTRON msi
2L	1277241	2L_1277241_SNP [dm3] 2L_1277241_SNP [dm6]	T	G	1.831e^-4	0.692	INTRON robo3
3L	8266182	3L_8266182_SNP [dm3] 3L_8273082_SNP [dm6]	A	T	1.833e^-4	0.692	INTRON Dscam4
3R	15012408	3R_15012408_SNP [dm3] 3R_19186686_SNP [dm6]	T	C	1.839e^-4	0.692	INTRON CG31475	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	10796428	3L_10796428_DEL [dm3] 3L_10803328_DEL [dm6]	TC	T	1.839e^-4	0.692	DOWNSTREAM CG12523 & 1 other INTERGENIC
3R	18347674	3R_18347674_SNP [dm3] 3R_22521952_SNP [dm6]	A	G	1.842e^-4	0.692	INTRON CG5346	TF binding site mE1_TFBS_chinmo
3R	23715422	3R_23715422_SNP [dm3] 3R_27889700_SNP [dm6]	T	C	1.844e^-4	0.692	INTRON CG34353
3L	11916298	3L_11916298_SNP [dm3] 3L_11923198_SNP [dm6]	C	T	1.847e^-4	0.692	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6166345	X_6166345_SNP [dm3] X_6272312_SNP [dm6]	A	C	1.854e^-4	0.692	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	1.859e^-4	0.692	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9113339	3L_9113339_SNP [dm3] 3L_9120239_SNP [dm6]	C	T	1.860e^-4	0.692	INTRON bol
2L	17761379	2L_17761379_SNP [dm3] 2L_17761379_SNP [dm6]	G	T	1.865e^-4	0.692	INTRON CadN
3R	12590860	3R_12590860_SNP [dm3] 3R_16765138_SNP [dm6]	T	C	1.868e^-4	0.692	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10556252	2R_10556252_INS [dm3] 2R_14668747_INS [dm6]	C	CTAC	1.881e^-4	0.692
3R	27451748	3R_27451748_SNP [dm3] 3R_31626026_SNP [dm6]	G	A	1.885e^-4	0.692	INTRON kek6
3R	15395086	3R_15395086_SNP [dm3] 3R_19569364_SNP [dm6]	C	A	1.885e^-4	0.692	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	8335619	2R_8335619_SNP [dm3] 2R_12448114_SNP [dm6]	A	T	1.897e^-4	0.692	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2095359	3L_2095359_SNP [dm3] 3L_2095359_SNP [dm6]	A	T	1.900e^-4	0.692	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3R	18347677	3R_18347677_SNP [dm3] 3R_22521955_SNP [dm6]	T	G	1.902e^-4	0.692	INTRON CG5346	TF binding site mE1_TFBS_chinmo
3L	12858946	3L_12858946_SNP [dm3] 3L_12865846_SNP [dm6]	G	C	1.903e^-4	0.692	INTERGENIC
2R	14208398	2R_14208398_DEL [dm3] 2R_18320893_DEL [dm6]	ATTTATCAA	G	1.909e^-4	0.692	INTRON sbb
3R	26456254	3R_26456254_SNP [dm3] 3R_30630532_SNP [dm6]	G	A	1.915e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23934047	3R_23934047_SNP [dm3] 3R_28108325_SNP [dm6]	G	A	1.924e^-4	0.692	INTERGENIC
3R	11896173	3R_11896173_SNP [dm3] 3R_16070451_SNP [dm6]	A	G	1.924e^-4	0.692	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_cad
2L	17742010	2L_17742010_DEL [dm3] 2L_17742010_DEL [dm6]	TTTCACAGAATGTTGGGACA...	T	1.936e^-4	0.692	INTRON CadN
3L	5252348	3L_5252348_SNP [dm3] 3L_5259248_SNP [dm6]	C	G	1.946e^-4	0.692	INTRON shep
3L	16163839	3L_16163839_SNP [dm3] 3L_16170739_SNP [dm6]	T	C	1.950e^-4	0.692	NON_SYNONYMOUS_CODING CG33795 UPSTREAM CG33796
3R	26518433	3R_26518433_SNP [dm3] 3R_30692711_SNP [dm6]	T	C	1.957e^-4	0.692	UTR_3_PRIME Spn100A DOWNSTREAM CG12069	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17717674	2L_17717674_INS [dm3] 2L_17717674_INS [dm6]	G	GG	1.966e^-4	0.692	INTRON CadN
3L	7316537	3L_7316537_SNP [dm3] 3L_7323437_SNP [dm6]	G	A	1.972e^-4	0.692	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	7316598	3L_7316598_SNP [dm3] 3L_7323498_SNP [dm6]	C	T	1.973e^-4	0.692	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	1255295	3L_1255295_SNP [dm3] 3L_1255295_SNP [dm6]	T	C	1.974e^-4	0.692	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
3R	18118475	3R_18118475_SNP [dm3] 3R_22292753_SNP [dm6]	C	G	1.978e^-4	0.692	SYNONYMOUS_CODING SKIP UPSTREAM mir-1010
3R	22744207	3R_22744207_SNP [dm3] 3R_26918485_SNP [dm6]	C	T	1.985e^-4	0.692	INTRON sda
3L	15058454	3L_15058454_SNP [dm3] 3L_15065354_SNP [dm6]	T	C	1.987e^-4	0.692	UPSTREAM Sytbeta DOWNSTREAM cp309 INTERGENIC
2L	4253907	2L_4253907_SNP [dm3] 2L_4253907_SNP [dm6]	A	C	1.988e^-4	0.692	INTERGENIC
X	5052674	X_5052674_SNP [dm3] X_5158641_SNP [dm6]	C	G	1.989e^-4	0.692	INTRON rg & 1 other
3R	18347676	3R_18347676_SNP [dm3] 3R_22521954_SNP [dm6]	A	C	1.990e^-4	0.692	INTRON CG5346	TF binding site mE1_TFBS_chinmo
3R	13417056	3R_13417056_SNP [dm3] 3R_17591334_SNP [dm6]	C	T	1.993e^-4	0.692	INTERGENIC
3L	12236397	3L_12236397_SNP [dm3] 3L_12243297_SNP [dm6]	C	T	1.994e^-4	0.692	INTRON app
2R	15060093	2R_15060093_SNP [dm3] 2R_19172588_SNP [dm6]	G	A	1.994e^-4	0.692	INTRON CG10737
3L	2291041	3L_2291041_SNP [dm3] 3L_2291041_SNP [dm6]	C	G	1.996e^-4	0.692	INTRON MsR2
3R	26665108	3R_26665108_SNP [dm3] 3R_30839386_SNP [dm6]	T	C	1.998e^-4	0.692	SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
3R	18771681	3R_18771681_SNP [dm3] 3R_22945959_SNP [dm6]	G	A	1.999e^-4	0.692	INTRON klg	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27118394	3R_27118394_SNP [dm3] 3R_31292672_SNP [dm6]	G	C	2.002e^-4	0.692	INTERGENIC
3L	7619639	3L_7619639_INS [dm3] 3L_7626539_INS [dm6]	C	CTAG	2.002e^-4	0.692	INTRON CG33275
3L	11640795	3L_11640795_SNP [dm3] 3L_11647695_SNP [dm6]	T	C	2.004e^-4	0.692	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3R	14369125	3R_14369125_SNP [dm3] 3R_18543403_SNP [dm6]	G	A	2.004e^-4	0.692	INTRON fru
2R	7803774	2R_7803774_DEL [dm3] 2R_11916269_DEL [dm6]	GTGAG	G	2.005e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_cad
X	3187422	X_3187422_SNP [dm3] X_3293389_SNP [dm6]	C	A	2.008e^-4	0.692	INTRON dnc	TF binding site BDTNP1_TFBS_dl
3L	14146301	3L_14146301_SNP [dm3] 3L_14153201_SNP [dm6]	G	C	2.012e^-4	0.692	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	15337443	2L_15337443_SNP [dm3] 2L_15337443_SNP [dm6]	T	A	2.012e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21970644	2L_21970644_SNP [dm3] 2L_21970644_SNP [dm6]	A	G	2.012e^-4	0.692	INTERGENIC
3L	9113360	3L_9113360_SNP [dm3] 3L_9120260_SNP [dm6]	A	T	2.014e^-4	0.692	INTRON bol
3L	2265280	3L_2265280_SNP [dm3] 3L_2265280_SNP [dm6]	G	A	2.021e^-4	0.692	SYNONYMOUS_CODING ecd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	21096405	2L_21096405_INS [dm3] 2L_21096405_INS [dm6]	T	TT	2.022e^-4	0.692	UPSTREAM CG34136 INTRON CG12050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2188086	3L_2188086_SNP [dm3] 3L_2188086_SNP [dm6]	G	A	2.024e^-4	0.692	DOWNSTREAM CG13810 INTERGENIC
3L	5550036	3L_5550036_SNP [dm3] 3L_5556936_SNP [dm6]	T	A	2.024e^-4	0.692	INTERGENIC
3L	14146557	3L_14146557_SNP [dm3] 3L_14153457_SNP [dm6]	T	A	2.026e^-4	0.692	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	9579341	3L_9579341_SNP [dm3] 3L_9586241_SNP [dm6]	A	T	2.029e^-4	0.692	INTRON CG42673
3R	24060577	3R_24060577_SNP [dm3] 3R_28234855_SNP [dm6]	G	A	2.037e^-4	0.692	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3L	10357696	3L_10357696_SNP [dm3] 3L_10364596_SNP [dm6]	A	T	2.040e^-4	0.692	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	6689842	2L_6689842_SNP [dm3] 2L_6689842_SNP [dm6]	C	T	2.045e^-4	0.692	UTR_3_PRIME Tsp UPSTREAM Tsp INTRON Tsp
3L	16026801	3L_16026801_SNP [dm3] 3L_16033701_SNP [dm6]	G	A	2.048e^-4	0.692	UPSTREAM CG42716 & 2 others DOWNSTREAM Notum INTERGENIC
3L	16756078	3L_16756078_SNP [dm3] 3L_16762978_SNP [dm6]	A	C	2.048e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	10592507	3R_10592507_SNP [dm3] 3R_14766785_SNP [dm6]	C	G	2.053e^-4	0.692	INTRON jvl
3L	10814263	3L_10814263_SNP [dm3] 3L_10821163_SNP [dm6]	C	A	2.058e^-4	0.692	INTERGENIC
3L	23147200	3L_23147200_SNP [dm3] 3L_23154100_SNP [dm6]	A	T	2.062e^-4	0.692	INTERGENIC	transposable element FlyBase
3L	15858287	3L_15858287_SNP [dm3] 3L_15865187_SNP [dm6]	T	G	2.072e^-4	0.692	INTRON pHCl
3R	15399482	3R_15399482_SNP [dm3] 3R_19573760_SNP [dm6]	G	T	2.074e^-4	0.692	INTRON Dys
3R	23945085	3R_23945085_SNP [dm3] 3R_28119363_SNP [dm6]	G	A	2.083e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9706161	2L_9706161_SNP [dm3] 2L_9706161_SNP [dm6]	T	C	2.084e^-4	0.692	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	14821682	2R_14821682_SNP [dm3] 2R_18934177_SNP [dm6]	A	T	2.094e^-4	0.692	INTRON sano
X	14158711	X_14158711_SNP [dm3] X_14264678_SNP [dm6]	A	G	2.094e^-4	0.692	SYNONYMOUS_CODING CG1461 DOWNSTREAM CG13404
3R	14034486	3R_14034486_SNP [dm3] 3R_18208764_SNP [dm6]	A	T	2.098e^-4	0.692	UPSTREAM CG44158 INTRON CG7985
X	3187420	X_3187420_SNP [dm3] X_3293387_SNP [dm6]	C	T	2.099e^-4	0.692	INTRON dnc	TF binding site BDTNP1_TFBS_dl
3R	26174861	3R_26174861_SNP [dm3] 3R_30349139_SNP [dm6]	C	T	2.099e^-4	0.692	INTRON hdc
3R	26929054	3R_26929054_SNP [dm3] 3R_31103332_SNP [dm6]	T	C	2.100e^-4	0.692	INTERGENIC
2R	9160908	2R_9160908_SNP [dm3] 2R_13273403_SNP [dm6]	G	C	2.101e^-4	0.692	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3R	21392708	3R_21392708_SNP [dm3] 3R_25566986_SNP [dm6]	A	T	2.103e^-4	0.692	INTRON msi
2L	5064393	2L_5064393_SNP [dm3] 2L_5064393_SNP [dm6]	T	C	2.104e^-4	0.692	UTR_5_PRIME qtc UPSTREAM CR43820 INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13874687	3L_13874687_SNP [dm3] 3L_13881587_SNP [dm6]	C	G	2.109e^-4	0.692	UPSTREAM CG13737 INTRON dysc & 1 other
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	2.111e^-4	0.692	INTRON nwk
2L	13693785	2L_13693785_SNP [dm3] 2L_13693785_SNP [dm6]	C	A	2.111e^-4	0.692	INTRON CG31814
3R	12709503	3R_12709503_SNP [dm3] 3R_16883781_SNP [dm6]	A	G	2.111e^-4	0.692	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3L	12858936	3L_12858936_SNP [dm3] 3L_12865836_SNP [dm6]	A	G	2.140e^-4	0.698	INTERGENIC
3L	12858937	3L_12858937_SNP [dm3] 3L_12865837_SNP [dm6]	T	C	2.140e^-4	0.698	INTERGENIC
3R	12592910	3R_12592910_SNP [dm3] 3R_16767188_SNP [dm6]	T	C	2.143e^-4	0.698	UPSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	2217876	2L_2217876_SNP [dm3] 2L_2217876_SNP [dm6]	G	A	2.146e^-4	0.698	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19052124	3R_19052124_SNP [dm3] 3R_23226402_SNP [dm6]	G	A	2.148e^-4	0.698	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9161840	2R_9161840_SNP [dm3] 2R_13274335_SNP [dm6]	T	A	2.158e^-4	0.7	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3L	6078024	3L_6078024_SNP [dm3] 3L_6084924_SNP [dm6]	A	C	2.165e^-4	0.701	INTRON CG13293
3L	22909928	3L_22909928_SNP [dm3] 3L_22916828_SNP [dm6]	T	C	2.171e^-4	0.701	INTRON CG12768
3R	26086131	3R_26086131_SNP [dm3] 3R_30260409_SNP [dm6]	G	C	2.173e^-4	0.701	INTERGENIC
3L	14713931	3L_14713931_SNP [dm3] 3L_14720831_SNP [dm6]	A	T	2.183e^-4	0.703	INTRON ome
2L	1145979	2L_1145979_SNP [dm3] 2L_1145979_SNP [dm6]	G	C	2.188e^-4	0.703	SYNONYMOUS_CODING MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5250157	3L_5250157_SNP [dm3] 3L_5257057_SNP [dm6]	T	C	2.189e^-4	0.703	INTRON shep
3R	18334979	3R_18334979_SNP [dm3] 3R_22509257_SNP [dm6]	G	A	2.197e^-4	0.704	INTRON Octbeta1R
3L	3983490	3L_3983490_SNP [dm3] 3L_3983490_SNP [dm6]	G	C	2.200e^-4	0.704	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9594952	2L_9594952_SNP [dm3] 2L_9594952_SNP [dm6]	T	C	2.211e^-4	0.706	INTERGENIC	regulatory region REDfly_CRMs
3R	26518030	3R_26518030_SNP [dm3] 3R_30692308_SNP [dm6]	C	G	2.215e^-4	0.707	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26668348	3R_26668348_SNP [dm3] 3R_30842626_SNP [dm6]	A	G	2.223e^-4	0.707	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14553468	3L_14553468_SNP [dm3] 3L_14560368_SNP [dm6]	G	T	2.223e^-4	0.707	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8216554	3L_8216554_SNP [dm3] 3L_8223454_SNP [dm6]	T	C	2.227e^-4	0.707	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
X	10619271	X_10619271_INS [dm3] X_10725238_INS [dm6]	T	TT	2.242e^-4	0.708	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	24375138	3R_24375138_SNP [dm3] 3R_28549416_SNP [dm6]	A	T	2.249e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15913427	3R_15913427_SNP [dm3] 3R_20087705_SNP [dm6]	A	T	2.249e^-4	0.708	INTERGENIC
3R	16543688	3R_16543688_SNP [dm3] 3R_20717966_SNP [dm6]	C	G	2.254e^-4	0.708	INTERGENIC
2R	18059808	2R_18059808_SNP [dm3] 2R_22172303_SNP [dm6]	A	C	2.256e^-4	0.708	DOWNSTREAM CG3045 INTRON a
2R	5074216	2R_5074216_SNP [dm3] 2R_9186711_SNP [dm6]	G	A	2.257e^-4	0.708	UTR_3_PRIME CG8026 & 1 other UPSTREAM ltd DOWNSTREAM CG8026
3L	9113345	3L_9113345_SNP [dm3] 3L_9120245_SNP [dm6]	T	C	2.267e^-4	0.708	INTRON bol
3R	11205407	3R_11205407_SNP [dm3] 3R_15379685_SNP [dm6]	C	T	2.273e^-4	0.708	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	26454863	3R_26454863_SNP [dm3] 3R_30629141_SNP [dm6]	A	G	2.275e^-4	0.708	UPSTREAM CG2267 INTERGENIC
3R	11628406	3R_11628406_SNP [dm3] 3R_15802684_SNP [dm6]	G	A	2.277e^-4	0.708	SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16721340	3L_16721340_DEL [dm3] 3L_16728240_DEL [dm6]	AA	A	2.279e^-4	0.708	UPSTREAM PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	10896518	2L_10896518_SNP [dm3] 2L_10896518_SNP [dm6]	T	G	2.282e^-4	0.708	INTERGENIC
2R	11957818	2R_11957818_SNP [dm3] 2R_16070313_SNP [dm6]	G	A	2.285e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23505182	3R_23505182_SNP [dm3] 3R_27679460_SNP [dm6]	G	T	2.288e^-4	0.708	DOWNSTREAM CG5590 & 1 other INTRON CG12883	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21357066	3R_21357066_SNP [dm3] 3R_25531344_SNP [dm6]	T	A	2.288e^-4	0.708	INTRON msi
3R	21703108	3R_21703108_SNP [dm3] 3R_25877386_SNP [dm6]	C	A	2.302e^-4	0.711	INTRON Tsp96F	TF binding site mE1_TFBS_inv
3R	23944138	3R_23944138_SNP [dm3] 3R_28118416_SNP [dm6]	G	A	2.308e^-4	0.711	INTERGENIC
2L	17673895	2L_17673895_SNP [dm3] 2L_17673895_SNP [dm6]	G	C	2.309e^-4	0.711	INTRON CadN
3R	22744224	3R_22744224_SNP [dm3] 3R_26918502_SNP [dm6]	G	A	2.323e^-4	0.713	INTRON sda
X	14158394	X_14158394_SNP [dm3] X_14264361_SNP [dm6]	A	C	2.332e^-4	0.713	DOWNSTREAM CG13404 INTRON CG1461
2L	12633004	2L_12633004_SNP [dm3] 2L_12633004_SNP [dm6]	T	A	2.332e^-4	0.713	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	10513445	2R_10513445_SNP [dm3] 2R_14625940_SNP [dm6]	G	T	2.333e^-4	0.713	INTERGENIC
2R	6753461	2R_6753461_SNP [dm3] 2R_10865956_SNP [dm6]	A	G	2.338e^-4	0.713	INTRON CG30015
3L	11343242	3L_11343242_SNP [dm3] 3L_11350142_SNP [dm6]	G	A	2.342e^-4	0.713	UPSTREAM CR45251 INTERGENIC
3L	14200944	3L_14200944_SNP [dm3] 3L_14207844_SNP [dm6]	G	A	2.343e^-4	0.713	INTRON nuf
2L	17695380	2L_17695380_SNP [dm3] 2L_17695380_SNP [dm6]	A	G	2.345e^-4	0.713	INTRON CadN
2R	4553179	2R_4553179_DEL [dm3] 2R_8665674_DEL [dm6]	TGGAAATGATCATCCACT...	T	2.349e^-4	0.713	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9482023	2R_9482023_SNP [dm3] 2R_13594518_SNP [dm6]	G	A	2.352e^-4	0.713	SYNONYMOUS_CODING CG6197	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	10417065	2L_10417065_SNP [dm3] 2L_10417065_SNP [dm6]	A	G	2.358e^-4	0.713	NON_SYNONYMOUS_CODING Klp31E	TF binding site BDTNP1_TFBS_twi
X	5180680	X_5180680_SNP [dm3] X_5286647_SNP [dm6]	G	A	2.366e^-4	0.715	INTERGENIC
2R	15060067	2R_15060067_SNP [dm3] 2R_19172562_SNP [dm6]	A	G	2.373e^-4	0.715	INTRON CG10737
3L	9113306	3L_9113306_SNP [dm3] 3L_9120206_SNP [dm6]	C	G	2.380e^-4	0.716	INTRON bol
2R	9139941	2R_9139941_SNP [dm3] 2R_13252436_SNP [dm6]	C	T	2.385e^-4	0.716	UPSTREAM CG4712 INTRON CG4714	TF binding site mE1_TFBS_cad
3L	2187631	3L_2187631_SNP [dm3] 3L_2187631_SNP [dm6]	C	T	2.386e^-4	0.716	SYNONYMOUS_CODING CG13810	TF binding site mE1_TFBS_cad
2L	4079792	2L_4079792_SNP [dm3] 2L_4079792_SNP [dm6]	T	A	2.396e^-4	0.717	INTRON ed
2L	17711186	2L_17711186_SNP [dm3] 2L_17711186_SNP [dm6]	C	T	2.398e^-4	0.717	INTRON CadN
2L	14255720	2L_14255720_SNP [dm3] 2L_14255720_SNP [dm6]	T	C	2.399e^-4	0.717	INTERGENIC
2L	281271	2L_281271_SNP [dm3] 2L_281271_SNP [dm6]	C	T	2.422e^-4	0.719	SYNONYMOUS_CODING smo DOWNSTREAM CG11601	TF binding site BDTNP1_TFBS_dl
2L	17731391	2L_17731391_SNP [dm3] 2L_17731391_SNP [dm6]	G	A	2.423e^-4	0.719	INTRON CadN
3L	19781150	3L_19781150_DEL [dm3] 3L_19788050_DEL [dm6]	AA	G	2.423e^-4	0.719	INTRON CG42637 & 1 other
2L	10028615	2L_10028615_SNP [dm3] 2L_10028615_SNP [dm6]	G	A	2.427e^-4	0.719	SYNONYMOUS_CODING CG13127
3R	16948472	3R_16948472_INS [dm3] 3R_21122750_INS [dm6]	A	ATCTTTGATGTGA...	2.427e^-4	0.719	INTRON slmb
2L	4307768	2L_4307768_SNP [dm3] 2L_4307768_SNP [dm6]	C	T	2.443e^-4	0.719	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4337175	2L_4337175_SNP [dm3] 2L_4337175_SNP [dm6]	G	A	2.445e^-4	0.719	INTRON Atet	TF binding site BDTNP1_TFBS_da
3R	18581576	3R_18581576_SNP [dm3] 3R_22755854_SNP [dm6]	T	C	2.452e^-4	0.719	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13935214	2L_13935214_SNP [dm3] 2L_13935214_SNP [dm6]	C	G	2.467e^-4	0.719	UPSTREAM CG16885 INTRON Ance-3
3L	14350039	3L_14350039_SNP [dm3] 3L_14356939_SNP [dm6]	A	C	2.472e^-4	0.719	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	12720943	2L_12720943_INS [dm3] 2L_12720943_INS [dm6]	A	AG	2.474e^-4	0.719	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	19441286	X_19441286_DEL [dm3] X_19547253_DEL [dm6]	GGTTCG	G	2.483e^-4	0.719	UTR_5_PRIME CG32532	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18529038	3R_18529038_SNP [dm3] 3R_22703316_SNP [dm6]	A	G	2.486e^-4	0.719	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17744134	2L_17744134_SNP [dm3] 2L_17744134_SNP [dm6]	A	T	2.489e^-4	0.719	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9947840	3R_9947840_SNP [dm3] 3R_14122118_SNP [dm6]	G	T	2.492e^-4	0.719	SPLICE_SITE_REGION Abi UTR_5_PRIME Abi UPSTREAM twf INTRON Abi	TF binding site mE1_TFBS_cad
2L	2217975	2L_2217975_SNP [dm3] 2L_2217975_SNP [dm6]	C	T	2.501e^-4	0.719	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23148527	3L_23148527_DEL [dm3] 3L_23155427_DEL [dm6]	CG	C	2.518e^-4	0.719	INTERGENIC
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	2.525e^-4	0.719	INTRON sano
3R	15962426	3R_15962426_SNP [dm3] 3R_20136704_SNP [dm6]	G	T	2.534e^-4	0.719	INTERGENIC
3R	26699984	3R_26699984_SNP [dm3] 3R_30874262_SNP [dm6]	T	G	2.538e^-4	0.719	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17755746	2L_17755746_SNP [dm3] 2L_17755746_SNP [dm6]	G	A	2.539e^-4	0.719	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15130484	3R_15130484_SNP [dm3] 3R_19304762_SNP [dm6]	G	A	2.541e^-4	0.719	UTR_3_PRIME Dl
3R	25731683	3R_25731683_SNP [dm3] 3R_29905961_SNP [dm6]	G	C	2.551e^-4	0.719	INTRON CG15515
3R	24895732	3R_24895732_SNP [dm3] 3R_29070010_SNP [dm6]	A	G	2.552e^-4	0.719	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	19780185	3R_19780185_SNP [dm3] 3R_23954463_SNP [dm6]	A	G	2.560e^-4	0.719	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19958134	2R_19958134_SNP [dm3] 2R_24070611_SNP [dm6]	T	C	2.560e^-4	0.719	INTRON CG3209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16226517	2R_16226517_SNP [dm3] 2R_20339012_SNP [dm6]	G	T	2.560e^-4	0.719	INTERGENIC
X	14239182	X_14239182_SNP [dm3] X_14345149_SNP [dm6]	G	A	2.560e^-4	0.719	INTRON dpr8
2R	9661143	2R_9661143_SNP [dm3] 2R_13773638_SNP [dm6]	G	A	2.562e^-4	0.719	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15416803	3L_15416803_SNP [dm3] 3L_15423703_SNP [dm6]	A	C	2.567e^-4	0.719	INTERGENIC
2R	7130688	2R_7130688_SNP [dm3] 2R_11243183_SNP [dm6]	G	C	2.570e^-4	0.719	UPSTREAM Listericin INTERGENIC
3R	25957295	3R_25957295_SNP [dm3] 3R_30131573_SNP [dm6]	G	A	2.572e^-4	0.719	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	9205785	X_9205785_SNP [dm3] X_9311752_SNP [dm6]	C	G	2.572e^-4	0.719	INTERGENIC
3R	19541611	3R_19541611_SNP [dm3] 3R_23715889_SNP [dm6]	C	T	2.576e^-4	0.719	INTRON nau	regulatory region REDfly_CRMs
3R	26549101	3R_26549101_SNP [dm3] 3R_30723379_SNP [dm6]	G	A	2.578e^-4	0.719	INTERGENIC
2R	8494388	2R_8494388_SNP [dm3] 2R_12606883_SNP [dm6]	T	A	2.580e^-4	0.719	INTRON Amph
3R	27006973	3R_27006973_SNP [dm3] 3R_31181251_SNP [dm6]	A	G	2.581e^-4	0.719	INTRON mesh
3R	23943228	3R_23943228_SNP [dm3] 3R_28117506_SNP [dm6]	G	T	2.583e^-4	0.719	INTERGENIC
2R	8558334	2R_8558334_SNP [dm3] 2R_12670829_SNP [dm6]	G	T	2.586e^-4	0.719	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	16192206	3R_16192206_SNP [dm3] 3R_20366484_SNP [dm6]	G	T	2.591e^-4	0.719	INTERGENIC
X	4622625	X_4622625_SNP [dm3] X_4728592_SNP [dm6]	T	C	2.602e^-4	0.719	UTR_3_PRIME Proc-R
3L	10810283	3L_10810283_SNP [dm3] 3L_10817183_SNP [dm6]	A	G	2.603e^-4	0.719	DOWNSTREAM CR45247 INTERGENIC
X	14158768	X_14158768_SNP [dm3] X_14264735_SNP [dm6]	T	C	2.608e^-4	0.719	SYNONYMOUS_CODING CG1461 DOWNSTREAM CG13404
2L	13693807	2L_13693807_SNP [dm3] 2L_13693807_SNP [dm6]	T	C	2.615e^-4	0.719	INTRON CG31814
2L	17677244	2L_17677244_SNP [dm3] 2L_17677244_SNP [dm6]	A	C	2.617e^-4	0.719	INTRON CadN
3R	20432881	3R_20432881_INS [dm3] 3R_24607159_INS [dm6]	C	CC	2.620e^-4	0.719	INTRON mld
X	19442049	X_19442049_DEL [dm3] X_19548016_DEL [dm6]	CGGCAGAACCATTCTG...	A	2.623e^-4	0.719	UPSTREAM CG32532 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19653864	3R_19653864_SNP [dm3] 3R_23828142_SNP [dm6]	G	A	2.627e^-4	0.719	DOWNSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	14204929	X_14204929_SNP [dm3] X_14310896_SNP [dm6]	G	T	2.633e^-4	0.719	INTERGENIC
3R	18779740	3R_18779740_SNP [dm3] 3R_22954018_SNP [dm6]	T	A	2.633e^-4	0.719	INTRON klg
3L	15888568	3L_15888568_SNP [dm3] 3L_15895468_SNP [dm6]	A	C	2.638e^-4	0.719	INTRON pHCl
3L	14045000	3L_14045000_SNP [dm3] 3L_14051900_SNP [dm6]	A	G	2.639e^-4	0.719	NON_SYNONYMOUS_CODING CG6833 DOWNSTREAM CG13484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11896481	3R_11896481_SNP [dm3] 3R_16070759_SNP [dm6]	C	T	2.640e^-4	0.719	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13935220	2L_13935220_SNP [dm3] 2L_13935220_SNP [dm6]	A	C	2.648e^-4	0.719	UPSTREAM CG16885 INTRON Ance-3
3L	4029375	3L_4029375_SNP [dm3] 3L_4029375_SNP [dm6]	C	T	2.652e^-4	0.719	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c DOWNSTREAM Gr64a
2L	17818937	2L_17818937_SNP [dm3] 2L_17818937_SNP [dm6]	C	T	2.659e^-4	0.719	INTRON CadN2
3R	16543730	3R_16543730_SNP [dm3] 3R_20718008_SNP [dm6]	A	T	2.660e^-4	0.719	INTERGENIC
X	9458119	X_9458119_SNP [dm3] X_9564086_SNP [dm6]	T	G	2.665e^-4	0.719	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12453308	3L_12453308_SNP [dm3] 3L_12460208_SNP [dm6]	G	A	2.666e^-4	0.719	INTERGENIC
3R	18334899	3R_18334899_SNP [dm3] 3R_22509177_SNP [dm6]	G	C	2.672e^-4	0.719	INTRON Octbeta1R
X	7474205	X_7474205_SNP [dm3] X_7580172_SNP [dm6]	G	A	2.674e^-4	0.719	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	276931	2L_276931_SNP [dm3] 2L_276931_SNP [dm6]	T	C	2.684e^-4	0.719	UPSTREAM smo INTRON CG17078	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
X	5728467	X_5728467_SNP [dm3] X_5834434_SNP [dm6]	T	C	2.689e^-4	0.719	SYNONYMOUS_CODING CG15765
3L	9423010	3L_9423010_SNP [dm3] 3L_9429910_SNP [dm6]	A	G	2.690e^-4	0.719	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7004632	3L_7004632_SNP [dm3] 3L_7011532_SNP [dm6]	T	A	2.694e^-4	0.719	INTRON Mp
3R	19005416	3R_19005416_SNP [dm3] 3R_23179694_SNP [dm6]	G	T	2.695e^-4	0.719	INTRON Irk1
3L	10700130	3L_10700130_SNP [dm3] 3L_10707030_SNP [dm6]	A	G	2.699e^-4	0.719	INTERGENIC
2L	10022652	2L_10022652_SNP [dm3] 2L_10022652_SNP [dm6]	C	G	2.699e^-4	0.719	INTERGENIC
3R	16410812	3R_16410812_SNP [dm3] 3R_20585090_SNP [dm6]	A	G	2.701e^-4	0.719	INTRON CG16953	TF binding site BDTNP1_TFBS_dl
2R	15121045	2R_15121045_SNP [dm3] 2R_19233540_SNP [dm6]	G	C	2.705e^-4	0.719	INTRON cora
3R	18335365	3R_18335365_SNP [dm3] 3R_22509643_SNP [dm6]	T	C	2.708e^-4	0.719	SPLICE_SITE_REGION Octbeta1R UTR_5_PRIME Octbeta1R
2R	10510016	2R_10510016_SNP [dm3] 2R_14622511_SNP [dm6]	C	T	2.712e^-4	0.719	UPSTREAM snoRNA:Me28S-U1848 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	3027602	3L_3027602_SNP [dm3] 3L_3027602_SNP [dm6]	G	A	2.713e^-4	0.719	INTERGENIC
3L	10535797	3L_10535797_SNP [dm3] 3L_10542697_SNP [dm6]	A	G	2.726e^-4	0.719	INTRON A2bp1
2R	16561850	2R_16561850_SNP [dm3] 2R_20674345_SNP [dm6]	G	A	2.727e^-4	0.719	DOWNSTREAM CG30152 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18122084	3L_18122084_SNP [dm3] 3L_18128984_SNP [dm6]	A	T	2.733e^-4	0.719	UTR_3_PRIME Cyp312a1
3R	15863672	3R_15863672_SNP [dm3] 3R_20037950_SNP [dm6]	A	T	2.734e^-4	0.719	UTR_3_PRIME CG17193
3R	15863710	3R_15863710_SNP [dm3] 3R_20037988_SNP [dm6]	G	A	2.734e^-4	0.719	UTR_3_PRIME CG17193
3R	15863711	3R_15863711_SNP [dm3] 3R_20037989_SNP [dm6]	A	G	2.734e^-4	0.719	UTR_3_PRIME CG17193
3R	16878239	3R_16878239_SNP [dm3] 3R_21052517_SNP [dm6]	A	G	2.734e^-4	0.719	DOWNSTREAM Mvl INTRON Mvl
2L	6814497	2L_6814497_SNP [dm3] 2L_6814497_SNP [dm6]	T	C	2.740e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	19009893	2R_19009893_SNP [dm3] 2R_23122370_SNP [dm6]	G	A	2.752e^-4	0.719	INTERGENIC
3R	10643738	3R_10643738_SNP [dm3] 3R_14818016_SNP [dm6]	G	A	2.752e^-4	0.719	NON_SYNONYMOUS_CODING btsz UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24656013	3R_24656013_SNP [dm3] 3R_28830291_SNP [dm6]	C	T	2.756e^-4	0.719	INTRON WASp
3R	26079465	3R_26079465_SNP [dm3] 3R_30253743_SNP [dm6]	A	T	2.761e^-4	0.719	DOWNSTREAM CG9682 INTRON CG18404
3R	8051664	3R_8051664_SNP [dm3] 3R_12225942_SNP [dm6]	G	A	2.761e^-4	0.719	SYNONYMOUS_CODING CG12256 UPSTREAM CG17404 EXON CR43477	TF binding site mE1_TFBS_sens
X	16430576	X_16430576_INS [dm3] X_16536543_INS [dm6]	A	ACAATA	2.765e^-4	0.719	INTERGENIC
3R	4771610	3R_4771610_SNP [dm3] 3R_8945888_SNP [dm6]	A	G	2.766e^-4	0.719	UPSTREAM CG11964 INTERGENIC
X	15860198	X_15860198_SNP [dm3] X_15966165_SNP [dm6]	G	C	2.769e^-4	0.719	UPSTREAM mir-927 INTRON mmd
3R	22983234	3R_22983234_SNP [dm3] 3R_27157512_SNP [dm6]	A	T	2.772e^-4	0.719	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
3L	2122714	3L_2122714_SNP [dm3] 3L_2122714_SNP [dm6]	T	C	2.776e^-4	0.719	UTR_3_PRIME zormin INTRON zormin
3R	8051633	3R_8051633_SNP [dm3] 3R_12225911_SNP [dm6]	G	T	2.778e^-4	0.719	NON_SYNONYMOUS_CODING CG12256 UPSTREAM CG17404 EXON CR43477	TF binding site mE1_TFBS_sens
X	3112357	X_3112357_SNP [dm3] X_3218324_SNP [dm6]	A	G	2.783e^-4	0.719	INTRON dnc
2R	18140465	2R_18140465_SNP [dm3] 2R_22252960_SNP [dm6]	A	G	2.790e^-4	0.719	INTRON dve
3R	23796788	3R_23796788_SNP [dm3] 3R_27971066_SNP [dm6]	T	C	2.793e^-4	0.719	INTRON betaTub97EF
3R	25770401	3R_25770401_SNP [dm3] 3R_29944679_SNP [dm6]	G	A	2.807e^-4	0.719	SYNONYMOUS_CODING CG15523
2L	5064467	2L_5064467_SNP [dm3] 2L_5064467_SNP [dm6]	G	T	2.807e^-4	0.719	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25731672	3R_25731672_DEL [dm3] 3R_29905950_DEL [dm6]	GTGAC	T	2.809e^-4	0.719	INTRON CG15515
3L	21464058	3L_21464058_SNP [dm3] 3L_21470958_SNP [dm6]	A	G	2.818e^-4	0.719	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	20296146	3R_20296146_SNP [dm3] 3R_24470424_SNP [dm6]	A	G	2.819e^-4	0.719	DOWNSTREAM CG31128 INTERGENIC
3L	4028584	3L_4028584_SNP [dm3] 3L_4028584_SNP [dm6]	T	C	2.822e^-4	0.719	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16546157	3L_16546157_SNP [dm3] 3L_16553057_SNP [dm6]	G	C	2.833e^-4	0.719	INTERGENIC
3L	19999768	3L_19999768_SNP [dm3] 3L_20006668_SNP [dm6]	G	C	2.835e^-4	0.719	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16483131	3L_16483131_SNP [dm3] 3L_16490031_SNP [dm6]	C	A	2.837e^-4	0.719	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	2215053	2L_2215053_SNP [dm3] 2L_2215053_SNP [dm6]	C	G	2.837e^-4	0.719	NON_SYNONYMOUS_CODING CG34174 UTR_3_PRIME CG10880 UPSTREAM Uch
3L	5944522	3L_5944522_SNP [dm3] 3L_5951422_SNP [dm6]	G	A	2.840e^-4	0.719	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8560588	2R_8560588_SNP [dm3] 2R_12673083_SNP [dm6]	T	C	2.844e^-4	0.719	INTRON CG42708	TF binding site mE1_TFBS_cad
2R	11957844	2R_11957844_SNP [dm3] 2R_16070339_SNP [dm6]	G	T	2.844e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21970641	2L_21970641_SNP [dm3] 2L_21970641_SNP [dm6]	C	G	2.850e^-4	0.719	INTERGENIC
3R	16230729	3R_16230729_SNP [dm3] 3R_20405007_SNP [dm6]	A	T	2.852e^-4	0.719	INTRON Gfrl
3L	16173759	3L_16173759_SNP [dm3] 3L_16180659_SNP [dm6]	T	C	2.854e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	12677424	3R_12677424_SNP [dm3] 3R_16851702_SNP [dm6]	T	C	2.857e^-4	0.719	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18618340	3R_18618340_SNP [dm3] 3R_22792618_SNP [dm6]	T	A	2.863e^-4	0.719	INTRON CG7029	TF binding site mE1_TFBS_cad
3R	19702943	3R_19702943_INS [dm3] 3R_23877221_INS [dm6]	C	TATAA	2.868e^-4	0.719	INTRON Pli
3R	4918222	3R_4918222_SNP [dm3] 3R_9092500_SNP [dm6]	T	C	2.869e^-4	0.719	INTRON pum
2R	16852411	2R_16852411_SNP [dm3] 2R_20964906_SNP [dm6]	C	T	2.882e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2683032	2L_2683032_DEL [dm3] 2L_2683032_DEL [dm6]	ACATACATT	A	2.885e^-4	0.719	INTRON CG31690
2L	630297	2L_630297_SNP [dm3] 2L_630297_SNP [dm6]	C	T	2.886e^-4	0.719	INTERGENIC
3L	10235470	3L_10235470_INS [dm3] 3L_10242370_INS [dm6]	A	ATA	2.891e^-4	0.719	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	18682782	3R_18682782_SNP [dm3] 3R_22857060_SNP [dm6]	T	C	2.893e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4936077	2L_4936077_SNP [dm3] 2L_4936077_SNP [dm6]	G	A	2.895e^-4	0.719	INTRON hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2094894	3L_2094894_SNP [dm3] 3L_2094894_SNP [dm6]	G	A	2.896e^-4	0.719	INTRON sls
3R	26455903	3R_26455903_SNP [dm3] 3R_30630181_SNP [dm6]	C	T	2.898e^-4	0.719	INTERGENIC
3R	15153940	3R_15153940_SNP [dm3] 3R_19328218_SNP [dm6]	T	C	2.905e^-4	0.719	UPSTREAM CR44175 INTERGENIC
3L	6298654	3L_6298654_SNP [dm3] 3L_6305554_SNP [dm6]	G	A	2.910e^-4	0.719	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	9509956	2R_9509956_SNP [dm3] 2R_13622451_SNP [dm6]	C	A	2.911e^-4	0.719	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15820341	3R_15820341_SNP [dm3] 3R_19994619_SNP [dm6]	C	T	2.914e^-4	0.719	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2L	16089420	2L_16089420_SNP [dm3] 2L_16089420_SNP [dm6]	C	T	2.918e^-4	0.719	INTERGENIC
3L	11227251	3L_11227251_INS [dm3] 3L_11234151_INS [dm6]	G	GG	2.919e^-4	0.719	INTRON Ir68a
3L	9735552	3L_9735552_SNP [dm3] 3L_9742452_SNP [dm6]	T	C	2.925e^-4	0.719	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3R	23024503	3R_23024503_SNP [dm3] 3R_27198781_SNP [dm6]	A	C	2.927e^-4	0.719	INTERGENIC	regulatory region REDfly_CRMs
3R	16938658	3R_16938658_SNP [dm3] 3R_21112936_SNP [dm6]	G	T	2.929e^-4	0.719	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16836973	3R_16836973_SNP [dm3] 3R_21011251_SNP [dm6]	A	C	2.936e^-4	0.719	INTRON Calx
3R	16938217	3R_16938217_SNP [dm3] 3R_21112495_SNP [dm6]	A	G	2.942e^-4	0.719	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16182566	3L_16182566_SNP [dm3] 3L_16189466_SNP [dm6]	G	A	2.942e^-4	0.719	INTERGENIC
3L	2162975	3L_2162975_SNP [dm3] 3L_2162975_SNP [dm6]	A	C	2.948e^-4	0.719	INTRON CG15822
3L	23149907	3L_23149907_DEL [dm3] 3L_23156807_DEL [dm6]	CAGGGACAGGGGAGTCTTGT...	C	2.949e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25287814	3R_25287814_SNP [dm3] 3R_29462092_SNP [dm6]	C	T	2.957e^-4	0.719	NON_SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	6279341	2L_6279341_SNP [dm3] 2L_6279341_SNP [dm6]	C	T	2.957e^-4	0.719	INTRON Ddr	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	15899752	2R_15899752_SNP [dm3] 2R_20012247_SNP [dm6]	G	A	2.960e^-4	0.719	INTERGENIC
2L	6814438	2L_6814438_SNP [dm3] 2L_6814438_SNP [dm6]	A	C	2.960e^-4	0.719	INTERGENIC
3R	15154248	3R_15154248_SNP [dm3] 3R_19328526_SNP [dm6]	C	A	2.966e^-4	0.719	UPSTREAM CR44175 INTERGENIC
3R	18323840	3R_18323840_SNP [dm3] 3R_22498118_SNP [dm6]	A	C	2.969e^-4	0.719	INTRON Octbeta1R
3R	17774091	3R_17774091_SNP [dm3] 3R_21948369_SNP [dm6]	G	A	2.985e^-4	0.719	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10933642	2L_10933642_SNP [dm3] 2L_10933642_SNP [dm6]	T	C	3.003e^-4	0.719	INTRON dpr2
3R	25731689	3R_25731689_SNP [dm3] 3R_29905967_SNP [dm6]	C	T	3.008e^-4	0.719	SPLICE_SITE_REGION CG15515 INTRON CG15515
3R	26353227	3R_26353227_SNP [dm3] 3R_30527505_SNP [dm6]	C	T	3.009e^-4	0.719	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	11165912	3L_11165912_SNP [dm3] 3L_11172812_SNP [dm6]	T	C	3.031e^-4	0.719	UPSTREAM CG14142 DOWNSTREAM CG7616 INTERGENIC
2L	17362971	2L_17362971_SNP [dm3] 2L_17362971_SNP [dm6]	T	A	3.032e^-4	0.719	UPSTREAM CG31804 INTERGENIC
3R	26079471	3R_26079471_SNP [dm3] 3R_30253749_SNP [dm6]	G	A	3.035e^-4	0.719	DOWNSTREAM CG9682 INTRON CG18404
3R	15997878	3R_15997878_SNP [dm3] 3R_20172156_SNP [dm6]	A	G	3.038e^-4	0.719	INTRON CG5023
2L	17709766	2L_17709766_SNP [dm3] 2L_17709766_SNP [dm6]	C	T	3.043e^-4	0.719	INTRON CadN
3L	11343008	3L_11343008_SNP [dm3] 3L_11349908_SNP [dm6]	A	G	3.047e^-4	0.719	UPSTREAM CR45251 INTERGENIC
2L	2683464	2L_2683464_SNP [dm3] 2L_2683464_SNP [dm6]	G	C	3.049e^-4	0.719	INTRON CG31690
3L	15771585	3L_15771585_SNP [dm3] 3L_15778485_SNP [dm6]	G	A	3.051e^-4	0.719	INTERGENIC
3R	17808241	3R_17808241_SNP [dm3] 3R_21982519_SNP [dm6]	T	G	3.051e^-4	0.719	INTRON Eip93F	TF binding site mE1_TFBS_inv
2R	18027463	2R_18027463_DEL [dm3] 2R_22139958_DEL [dm6]	CGTAT	A	3.055e^-4	0.719	UTR_5_PRIME gom DOWNSTREAM CG11269 INTRON a
2R	603022	2R_603022_SNP [dm3] 2R_4715517_SNP [dm6]	G	T	3.055e^-4	0.719	INTRON Nipped-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	18122098	3L_18122098_DEL [dm3] 3L_18128998_DEL [dm6]	CTGGTG	C	3.060e^-4	0.719	UTR_3_PRIME Cyp312a1
3R	19558502	3R_19558502_SNP [dm3] 3R_23732780_SNP [dm6]	A	T	3.061e^-4	0.719	UPSTREAM Hmgcr INTRON Rpn9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11065025	2R_11065025_SNP [dm3] 2R_15177520_SNP [dm6]	A	T	3.061e^-4	0.719	INTRON igl
3L	14553426	3L_14553426_SNP [dm3] 3L_14560326_SNP [dm6]	G	C	3.064e^-4	0.719	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	14895783	3R_14895783_SNP [dm3] 3R_19070061_SNP [dm6]	G	A	3.067e^-4	0.719	INTRON cdi
3R	23893795	3R_23893795_SNP [dm3] 3R_28068073_SNP [dm6]	C	T	3.070e^-4	0.719	INTRON CG34362
X	19444787	X_19444787_SNP [dm3] X_19550754_SNP [dm6]	T	G	3.072e^-4	0.719	UPSTREAM mir-972 & 2 others INTERGENIC
3R	26668085	3R_26668085_SNP [dm3] 3R_30842363_SNP [dm6]	A	G	3.075e^-4	0.719	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26355137	3R_26355137_SNP [dm3] 3R_30529415_SNP [dm6]	G	T	3.080e^-4	0.719	UPSTREAM CR45553 DOWNSTREAM CR45552 INTRON CR45552	TF binding site mE1_TFBS_HSA
3L	11641794	3L_11641794_SNP [dm3] 3L_11648694_SNP [dm6]	T	A	3.082e^-4	0.719	UPSTREAM CG7339 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11712972	2L_11712972_INS [dm3] 2L_11712972_INS [dm6]	G	GG	3.094e^-4	0.719	INTERGENIC
2L	2215293	2L_2215293_SNP [dm3] 2L_2215293_SNP [dm6]	C	G	3.095e^-4	0.719	UTR_3_PRIME CG10880 DOWNSTREAM CG34174	TF binding site mE1_TFBS_HSA
3R	21620156	3R_21620156_SNP [dm3] 3R_25794434_SNP [dm6]	G	A	3.097e^-4	0.719	UPSTREAM CR43634 & 1 other INTERGENIC
2L	17362966	2L_17362966_SNP [dm3] 2L_17362966_SNP [dm6]	T	C	3.099e^-4	0.719	UPSTREAM CG31804 INTERGENIC
2R	12521622	2R_12521622_SNP [dm3] 2R_16634117_SNP [dm6]	T	G	3.099e^-4	0.719	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25412726	3R_25412726_SNP [dm3] 3R_29587004_SNP [dm6]	C	T	3.107e^-4	0.719	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16097473	2L_16097473_SNP [dm3] 2L_16097473_SNP [dm6]	G	T	3.110e^-4	0.719	INTERGENIC
2R	1011859	2R_1011859_SNP [dm3] 2R_5124354_SNP [dm6]	A	G	3.133e^-4	0.719	INTRON gus	transposable element FlyBase
2R	1012357	2R_1012357_SNP [dm3] 2R_5124852_SNP [dm6]	A	C	3.133e^-4	0.719	INTRON gus
3R	12588720	3R_12588720_SNP [dm3] 3R_16762998_SNP [dm6]	G	T	3.138e^-4	0.719	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8266205	3L_8266205_DEL [dm3] 3L_8273105_DEL [dm6]	AAATGGAAGCTGAAATGGGT...	A	3.140e^-4	0.719	INTRON Dscam4
3L	1073192	3L_1073192_SNP [dm3] 3L_1073192_SNP [dm6]	G	A	3.141e^-4	0.719	INTRON bab1
X	14239234	X_14239234_SNP [dm3] X_14345201_SNP [dm6]	T	G	3.144e^-4	0.719	INTRON dpr8
3R	25951790	3R_25951790_SNP [dm3] 3R_30126068_SNP [dm6]	A	T	3.148e^-4	0.719	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
X	3293414	X_3293414_SNP [dm3] X_3399381_SNP [dm6]	C	T	3.151e^-4	0.719	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14063171	3L_14063171_SNP [dm3] 3L_14070071_SNP [dm6]	G	A	3.151e^-4	0.719	SYNONYMOUS_CODING CG32138 UTR_3_PRIME CG32138
3R	11674395	3R_11674395_SNP [dm3] 3R_15848673_SNP [dm6]	G	T	3.154e^-4	0.719	DOWNSTREAM CG4546 INTRON cv-d
3R	25462601	3R_25462601_SNP [dm3] 3R_29636879_SNP [dm6]	C	A	3.155e^-4	0.719	INTRON Dop1R2
3R	13206697	3R_13206697_SNP [dm3] 3R_17380975_SNP [dm6]	G	T	3.157e^-4	0.719	INTRON Brf & 1 other
3R	17933528	3R_17933528_SNP [dm3] 3R_22107806_SNP [dm6]	C	T	3.157e^-4	0.719	INTRON CG5778
3R	23480639	3R_23480639_SNP [dm3] 3R_27654917_SNP [dm6]	G	C	3.165e^-4	0.719	INTRON tau	TF binding site mE1_TFBS_inv
3R	4159082	3R_4159082_SNP [dm3] 3R_8333360_SNP [dm6]	A	G	3.170e^-4	0.719	UTR_5_PRIME Poxm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21037760	3R_21037760_SNP [dm3] 3R_25212038_SNP [dm6]	C	T	3.172e^-4	0.719	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21867241	X_21867241_SNP [dm3] X_22465405_SNP [dm6]	T	C	3.178e^-4	0.719	SYNONYMOUS_CODING CG14619 INTRON CG14619
3R	22683471	3R_22683471_SNP [dm3] 3R_26857749_SNP [dm6]	G	A	3.181e^-4	0.719	INTRON Lerp
3L	10976829	3L_10976829_SNP [dm3] 3L_10983729_SNP [dm6]	A	G	3.182e^-4	0.719	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13866153	2L_13866153_SNP [dm3] 2L_13866153_SNP [dm6]	A	T	3.184e^-4	0.719	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	12858912	3L_12858912_SNP [dm3] 3L_12865812_SNP [dm6]	G	A	3.192e^-4	0.719	INTERGENIC
3L	18703409	3L_18703409_SNP [dm3] 3L_18710309_SNP [dm6]	C	T	3.200e^-4	0.719	INTERGENIC
3L	23170374	3L_23170374_SNP [dm3] 3L_23177274_SNP [dm6]	G	A	3.200e^-4	0.719	INTRON CG34031	transposable element FlyBase
3R	14319726	3R_14319726_SNP [dm3] 3R_18494004_SNP [dm6]	T	G	3.203e^-4	0.719	INTRON fru
2R	12807749	2R_12807749_SNP [dm3] 2R_16920244_SNP [dm6]	C	A	3.212e^-4	0.719	INTERGENIC
3L	14157818	3L_14157818_SNP [dm3] 3L_14164718_SNP [dm6]	C	A	3.218e^-4	0.719	INTERGENIC	regulatory region REDfly_CRMs
2L	15205554	2L_15205554_SNP [dm3] 2L_15205554_SNP [dm6]	G	A	3.221e^-4	0.719	INTERGENIC
2L	16216134	2L_16216134_SNP [dm3] 2L_16216134_SNP [dm6]	A	T	3.231e^-4	0.719	DOWNSTREAM CR43840 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12720945	2L_12720945_SNP [dm3] 2L_12720945_SNP [dm6]	G	A	3.231e^-4	0.719	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	17575262	2R_17575262_SNP [dm3] 2R_21687757_SNP [dm6]	A	G	3.242e^-4	0.719	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17328950	X_17328950_SNP [dm3] X_17434917_SNP [dm6]	G	A	3.245e^-4	0.719	INTRON CG12994
3R	16543680	3R_16543680_SNP [dm3] 3R_20717958_SNP [dm6]	A	T	3.246e^-4	0.719	INTERGENIC
3R	27454243	3R_27454243_SNP [dm3] 3R_31628521_SNP [dm6]	G	T	3.247e^-4	0.719	INTRON kek6
3R	17228143	3R_17228143_SNP [dm3] 3R_21402421_SNP [dm6]	T	A	3.249e^-4	0.719	DOWNSTREAM CG43311 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15399767	3R_15399767_SNP [dm3] 3R_19574045_SNP [dm6]	T	G	3.253e^-4	0.719	INTRON Dys
2L	17753618	2L_17753618_SNP [dm3] 2L_17753618_SNP [dm6]	A	T	3.270e^-4	0.719	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3661808	3L_3661808_SNP [dm3] 3L_3661808_SNP [dm6]	G	A	3.271e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13062616	3L_13062616_SNP [dm3] 3L_13069516_SNP [dm6]	A	G	3.274e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13417636	3R_13417636_SNP [dm3] 3R_17591914_SNP [dm6]	T	G	3.274e^-4	0.719	INTERGENIC
3R	26189442	3R_26189442_SNP [dm3] 3R_30363720_SNP [dm6]	A	T	3.275e^-4	0.719	UTR_3_PRIME hdc
3L	2228035	3L_2228035_SNP [dm3] 3L_2228035_SNP [dm6]	C	T	3.284e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17575260	2R_17575260_SNP [dm3] 2R_21687755_SNP [dm6]	C	T	3.285e^-4	0.719	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6500719	2L_6500719_SNP [dm3] 2L_6500719_SNP [dm6]	A	T	3.287e^-4	0.719	INTRON CG31637
2R	8817056	2R_8817056_SNP [dm3] 2R_12929551_SNP [dm6]	A	G	3.289e^-4	0.719	INTRON sug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18081705	2R_18081705_SNP [dm3] 2R_22194200_SNP [dm6]	G	T	3.293e^-4	0.719	INTRON Swim
2L	17703907	2L_17703907_SNP [dm3] 2L_17703907_SNP [dm6]	C	G	3.297e^-4	0.719	UPSTREAM CG43231 INTRON CadN
3L	1863777	3L_1863777_SNP [dm3] 3L_1863777_SNP [dm6]	A	C	3.300e^-4	0.719	NON_SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14131937	3R_14131937_SNP [dm3] 3R_18306215_SNP [dm6]	G	T	3.304e^-4	0.719	DOWNSTREAM PKD INTRON PKD
3L	16961315	3L_16961315_SNP [dm3] 3L_16968215_SNP [dm6]	C	G	3.309e^-4	0.719	UTR_3_PRIME Nc73EF DOWNSTREAM Nc73EF
2L	17740505	2L_17740505_SNP [dm3] 2L_17740505_SNP [dm6]	T	C	3.310e^-4	0.719	INTRON CadN	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8576109	2L_8576109_SNP [dm3] 2L_8576109_SNP [dm6]	G	T	3.313e^-4	0.719	INTRON Sema-1a
3R	16446833	3R_16446833_SNP [dm3] 3R_20621111_SNP [dm6]	A	T	3.313e^-4	0.719	UTR_3_PRIME CG5466 UPSTREAM H
3R	12806222	3R_12806222_SNP [dm3] 3R_16980500_SNP [dm6]	A	G	3.314e^-4	0.719	INTRON Ahcy89E
2L	19322994	2L_19322994_SNP [dm3] 2L_19322994_SNP [dm6]	C	A	3.316e^-4	0.719	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26106141	3R_26106141_SNP [dm3] 3R_30280419_SNP [dm6]	A	C	3.317e^-4	0.719	INTRON hdc	TF binding site mE1_TFBS_cad
2R	5081797	2R_5081797_SNP [dm3] 2R_9194292_SNP [dm6]	T	C	3.318e^-4	0.719	UPSTREAM unpg INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7004909	3L_7004909_INS [dm3] 3L_7011809_INS [dm6]	G	GG	3.318e^-4	0.719	INTRON Mp	TF binding site mE1_TFBS_bab1
3R	10182916	3R_10182916_SNP [dm3] 3R_14357194_SNP [dm6]	C	T	3.319e^-4	0.719	INTRON NK7.1
3R	25462203	3R_25462203_SNP [dm3] 3R_29636481_SNP [dm6]	A	T	3.322e^-4	0.719	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9482458	2R_9482458_SNP [dm3] 2R_13594953_SNP [dm6]	C	T	3.322e^-4	0.719	SYNONYMOUS_CODING CG6197	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14462719	2L_14462719_SNP [dm3] 2L_14462719_SNP [dm6]	A	T	3.329e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19465231	3R_19465231_SNP [dm3] 3R_23639509_SNP [dm6]	G	T	3.332e^-4	0.719	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	22114879	2L_22114879_SNP [dm3] 2L_22114879_SNP [dm6]	T	C	3.341e^-4	0.719	INTERGENIC
3L	16721475	3L_16721475_SNP [dm3] 3L_16728375_SNP [dm6]	C	T	3.345e^-4	0.719	UPSTREAM PGRP-SB1 DOWNSTREAM Dbp73D INTERGENIC	regulatory region REDfly_CRMs
3R	19558544	3R_19558544_SNP [dm3] 3R_23732822_SNP [dm6]	C	T	3.346e^-4	0.719	SYNONYMOUS_CODING Rpn9 UPSTREAM Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15899775	2R_15899775_SNP [dm3] 2R_20012270_SNP [dm6]	G	A	3.353e^-4	0.719	INTERGENIC
3R	17226102	3R_17226102_SNP [dm3] 3R_21400380_SNP [dm6]	A	G	3.355e^-4	0.719	UPSTREAM CG6475 INTERGENIC
3R	24060519	3R_24060519_SNP [dm3] 3R_28234797_SNP [dm6]	C	T	3.364e^-4	0.719	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3R	24757430	3R_24757430_SNP [dm3] 3R_28931708_SNP [dm6]	A	T	3.368e^-4	0.719	INTRON CG14521
2L	2668544	2L_2668544_SNP [dm3] 2L_2668544_SNP [dm6]	A	G	3.373e^-4	0.719	INTERGENIC
3R	18818869	3R_18818869_SNP [dm3] 3R_22993147_SNP [dm6]	A	C	3.374e^-4	0.719	INTRON Nha2
2R	9477256	2R_9477256_SNP [dm3] 2R_13589751_SNP [dm6]	G	A	3.377e^-4	0.719	INTRON CG6191 & 1 other
3R	15863726	3R_15863726_SNP [dm3] 3R_20038004_SNP [dm6]	C	T	3.380e^-4	0.719	UTR_3_PRIME CG17193
3R	16044226	3R_16044226_SNP [dm3] 3R_20218504_SNP [dm6]	C	G	3.384e^-4	0.719	INTRON Nlg4
3R	22874263	3R_22874263_SNP [dm3] 3R_27048541_SNP [dm6]	G	A	3.392e^-4	0.719	UPSTREAM TwdlT INTRON RYa-R
2L	1514095	2L_1514095_SNP [dm3] 2L_1514095_SNP [dm6]	T	C	3.401e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14686526	3L_14686526_SNP [dm3] 3L_14693426_SNP [dm6]	A	T	3.401e^-4	0.719	INTRON ome
2R	13277807	2R_13277807_DEL [dm3] 2R_17390302_DEL [dm6]	CGGTC	C	3.402e^-4	0.719	INTERGENIC
2R	4552777	2R_4552777_INS [dm3] 2R_8665272_INS [dm6]	A	AACG	3.402e^-4	0.719	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	19337241	2R_19337241_SNP [dm3] 2R_23449718_SNP [dm6]	A	C	3.403e^-4	0.719	INTRON CG43795
2L	3101494	2L_3101494_SNP [dm3] 2L_3101494_SNP [dm6]	T	A	3.403e^-4	0.719	INTRON toc
2R	16901415	2R_16901415_SNP [dm3] 2R_21013910_SNP [dm6]	T	C	3.409e^-4	0.719	SPLICE_SITE_REGION CG9346 INTRON CG9346
3L	18122093	3L_18122093_MNP [dm3] 3L_18128993_MNP [dm6]	AAC	TTT	3.409e^-4	0.719	UTR_3_PRIME Cyp312a1
3R	25329659	3R_25329659_SNP [dm3] 3R_29503937_SNP [dm6]	C	A	3.410e^-4	0.719	UPSTREAM Trc8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	26179721	3R_26179721_SNP [dm3] 3R_30353999_SNP [dm6]	T	G	3.413e^-4	0.719	INTRON hdc
3R	26172539	3R_26172539_SNP [dm3] 3R_30346817_SNP [dm6]	T	C	3.417e^-4	0.719	INTRON hdc
3R	10451196	3R_10451196_SNP [dm3] 3R_14625474_SNP [dm6]	G	A	3.421e^-4	0.719	UTR_5_PRIME put UPSTREAM His4r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26668078	3R_26668078_INS [dm3] 3R_30842356_INS [dm6]	T	TCG	3.425e^-4	0.719	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16817761	3R_16817761_SNP [dm3] 3R_20992039_SNP [dm6]	G	T	3.428e^-4	0.719	INTRON Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23943560	3R_23943560_SNP [dm3] 3R_28117838_SNP [dm6]	G	A	3.429e^-4	0.719	INTERGENIC
3L	9579369	3L_9579369_SNP [dm3] 3L_9586269_SNP [dm6]	G	T	3.432e^-4	0.719	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22421339	3R_22421339_SNP [dm3] 3R_26595617_SNP [dm6]	T	C	3.440e^-4	0.719	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
3R	9761146	3R_9761146_SNP [dm3] 3R_13935424_SNP [dm6]	C	G	3.456e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13867910	2L_13867910_SNP [dm3] 2L_13867910_SNP [dm6]	C	A	3.456e^-4	0.719	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3023532	3L_3023532_SNP [dm3] 3L_3023532_SNP [dm6]	C	T	3.461e^-4	0.719	DOWNSTREAM aly INTERGENIC
3R	22223321	3R_22223321_SNP [dm3] 3R_26397599_SNP [dm6]	A	C	3.462e^-4	0.719	INTERGENIC
3L	3661802	3L_3661802_SNP [dm3] 3L_3661802_SNP [dm6]	A	T	3.473e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26090359	3R_26090359_SNP [dm3] 3R_30264637_SNP [dm6]	T	C	3.474e^-4	0.719	INTERGENIC
2L	17752573	2L_17752573_SNP [dm3] 2L_17752573_SNP [dm6]	A	T	3.479e^-4	0.719	UPSTREAM CadN INTRON CadN	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3551295	3L_3551295_SNP [dm3] 3L_3551295_SNP [dm6]	T	C	3.481e^-4	0.719	INTRON Eip63E
3L	10357367	3L_10357367_SNP [dm3] 3L_10364267_SNP [dm6]	C	A	3.481e^-4	0.719	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
2L	17808606	2L_17808606_SNP [dm3] 2L_17808606_SNP [dm6]	A	G	3.485e^-4	0.719	INTRON CadN2
X	15482040	X_15482040_SNP [dm3] X_15588007_SNP [dm6]	C	T	3.486e^-4	0.719	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9768424	2L_9768424_SNP [dm3] 2L_9768424_SNP [dm6]	G	A	3.489e^-4	0.719	UTR_3_PRIME CG4017 UPSTREAM CG17633 INTRON ppk18
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	3.498e^-4	0.719	INTRON nwk
3R	25120669	3R_25120669_SNP [dm3] 3R_29294947_SNP [dm6]	A	G	3.500e^-4	0.719	UTR_3_PRIME CG14506 DOWNSTREAM CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12806404	3R_12806404_SNP [dm3] 3R_16980682_SNP [dm6]	G	A	3.500e^-4	0.719	INTRON Ahcy89E
3L	9734751	3L_9734751_SNP [dm3] 3L_9741651_SNP [dm6]	A	T	3.500e^-4	0.719	INTRON CG42268 & 1 other
3R	15962391	3R_15962391_SNP [dm3] 3R_20136669_SNP [dm6]	A	G	3.503e^-4	0.719	INTERGENIC
2L	2929058	2L_2929058_SNP [dm3] 2L_2929058_SNP [dm6]	T	C	3.507e^-4	0.719	INTRON lilli
2L	17731255	2L_17731255_SNP [dm3] 2L_17731255_SNP [dm6]	T	C	3.507e^-4	0.719	INTRON CadN
3R	21898978	3R_21898978_SNP [dm3] 3R_26073256_SNP [dm6]	T	C	3.514e^-4	0.719	INTERGENIC
2R	8425337	2R_8425337_SNP [dm3] 2R_12537832_SNP [dm6]	T	C	3.518e^-4	0.719	INTRON fra
3L	14040662	3L_14040662_SNP [dm3] 3L_14047562_SNP [dm6]	T	A	3.518e^-4	0.719	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11256148	3R_11256148_SNP [dm3] 3R_15430426_SNP [dm6]	G	A	3.521e^-4	0.719	INTRON CG6118
3R	22815387	3R_22815387_SNP [dm3] 3R_26989665_SNP [dm6]	T	C	3.522e^-4	0.719	SYNONYMOUS_CODING CG31076
3R	2698673	3R_2698673_SNP [dm3] 3R_6872951_SNP [dm6]	G	T	3.525e^-4	0.719	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	5742249	X_5742249_SNP [dm3] X_5848216_SNP [dm6]	G	A	3.544e^-4	0.719	INTERGENIC
3R	26664962	3R_26664962_SNP [dm3] 3R_30839240_SNP [dm6]	C	A	3.549e^-4	0.719	SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
X	2551516	X_2551516_SNP [dm3] X_2657483_SNP [dm6]	T	A	3.552e^-4	0.719	INTRON sgg
3L	1399988	3L_1399988_SNP [dm3] 3L_1399988_SNP [dm6]	G	C	3.558e^-4	0.719	SYNONYMOUS_CODING CG32320 INTRON Ptp61F
3R	14172041	3R_14172041_SNP [dm3] 3R_18346319_SNP [dm6]	G	C	3.559e^-4	0.719	INTRON CG15803
3L	11920196	3L_11920196_SNP [dm3] 3L_11927096_SNP [dm6]	G	C	3.560e^-4	0.719	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	16022605	3R_16022605_SNP [dm3] 3R_20196883_SNP [dm6]	G	T	3.561e^-4	0.719	INTERGENIC
3L	14146733	3L_14146733_SNP [dm3] 3L_14153633_SNP [dm6]	C	A	3.563e^-4	0.719	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9612223	3L_9612223_SNP [dm3] 3L_9619123_SNP [dm6]	C	T	3.563e^-4	0.719	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	4348613	2L_4348613_SNP [dm3] 2L_4348613_SNP [dm6]	C	A	3.564e^-4	0.719	UPSTREAM CR44699 DOWNSTREAM CR44697 EXON CR44698	TF binding site BDTNP1_TFBS_twi
3R	26167484	3R_26167484_DEL [dm3] 3R_30341762_DEL [dm6]	TT	T	3.572e^-4	0.719	INTRON hdc
3R	26175828	3R_26175828_SNP [dm3] 3R_30350106_SNP [dm6]	C	T	3.572e^-4	0.719	INTRON hdc
3L	10235468	3L_10235468_SNP [dm3] 3L_10242368_SNP [dm6]	A	T	3.576e^-4	0.719	DOWNSTREAM CR44541 & 1 other INTERGENIC
3R	22760392	3R_22760392_SNP [dm3] 3R_26934670_SNP [dm6]	C	T	3.578e^-4	0.719	INTRON sda
2L	9768599	2L_9768599_SNP [dm3] 2L_9768599_SNP [dm6]	T	A	3.584e^-4	0.719	UTR_3_PRIME CG4017 UPSTREAM CG17633 INTRON ppk18
2L	11369033	2L_11369033_SNP [dm3] 2L_11369033_SNP [dm6]	T	A	3.591e^-4	0.72	INTRON salr	TF binding site mE1_TFBS_cad
2L	15321710	2L_15321710_SNP [dm3] 2L_15321710_SNP [dm6]	A	G	3.600e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19177650	3R_19177650_SNP [dm3] 3R_23351928_SNP [dm6]	C	T	3.604e^-4	0.721	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
2L	14042128	2L_14042128_SNP [dm3] 2L_14042128_SNP [dm6]	A	T	3.612e^-4	0.721	UTR_5_PRIME nAChRalpha5	TF binding site BDTNP1_TFBS_dl
2R	8556662	2R_8556662_DEL [dm3] 2R_12669157_DEL [dm6]	TGT	T	3.614e^-4	0.721	INTRON nemy
2R	10513683	2R_10513683_DEL [dm3] 2R_14626178_DEL [dm6]	TATAAATTTCC...	T	3.626e^-4	0.721	INTERGENIC
3R	25731679	3R_25731679_SNP [dm3] 3R_29905957_SNP [dm6]	G	C	3.632e^-4	0.721	INTRON CG15515
3R	24756235	3R_24756235_SNP [dm3] 3R_28930513_SNP [dm6]	G	A	3.637e^-4	0.721	INTRON CG14521
2L	17720391	2L_17720391_SNP [dm3] 2L_17720391_SNP [dm6]	A	T	3.641e^-4	0.721	INTRON CadN	TF binding site mE1_TFBS_inv
2L	17362951	2L_17362951_SNP [dm3] 2L_17362951_SNP [dm6]	A	G	3.641e^-4	0.721	UPSTREAM CG31804 INTERGENIC
3R	26612735	3R_26612735_INS [dm3] 3R_30787013_INS [dm6]	C	CA	3.646e^-4	0.721	UTR_3_PRIME zfh1
2L	2217731	2L_2217731_SNP [dm3] 2L_2217731_SNP [dm6]	T	C	3.649e^-4	0.721	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8577690	2L_8577690_SNP [dm3] 2L_8577690_SNP [dm6]	C	A	3.658e^-4	0.721	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	19388517	3R_19388517_SNP [dm3] 3R_23562795_SNP [dm6]	G	A	3.665e^-4	0.721	INTRON beat-IV	TF binding site mE1_TFBS_HSA
3L	12971653	3L_12971653_DEL [dm3] 3L_12978553_DEL [dm6]	AA	A	3.670e^-4	0.721	INTERGENIC
3L	10002761	3L_10002761_INS [dm3] 3L_10009661_INS [dm6]	T	TCTATATATTTT...	3.687e^-4	0.721	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10789484	2L_10789484_SNP [dm3] 2L_10789484_SNP [dm6]	A	C	3.690e^-4	0.721	UPSTREAM CG31870 INTRON CG31869
2L	3589134	2L_3589134_SNP [dm3] 2L_3589134_SNP [dm6]	C	T	3.690e^-4	0.721	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	4626723	3L_4626723_SNP [dm3] 3L_4626723_SNP [dm6]	A	T	3.691e^-4	0.721	UPSTREAM Rpd3 & 1 other EXON CR45438	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2377792	2L_2377792_SNP [dm3] 2L_2377792_SNP [dm6]	C	T	3.691e^-4	0.721	SYNONYMOUS_CODING Atxn7	TF binding site mE1_TFBS_chinmo
3L	1256356	3L_1256356_SNP [dm3] 3L_1256356_SNP [dm6]	G	A	3.708e^-4	0.721	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
3L	14095194	3L_14095194_SNP [dm3] 3L_14102094_SNP [dm6]	A	T	3.711e^-4	0.721	INTERGENIC
3L	12530016	3L_12530016_SNP [dm3] 3L_12536916_SNP [dm6]	C	T	3.713e^-4	0.721	SYNONYMOUS_CODING CG4069 DOWNSTREAM sowah	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17780009	2R_17780009_SNP [dm3] 2R_21892504_SNP [dm6]	A	G	3.714e^-4	0.721	INTRON Fili
2R	17514252	2R_17514252_SNP [dm3] 2R_21626747_SNP [dm6]	T	A	3.717e^-4	0.721	SYNONYMOUS_CODING mahj
3R	16633201	3R_16633201_SNP [dm3] 3R_20807479_SNP [dm6]	G	A	3.720e^-4	0.721	UTR_3_PRIME Syp
3L	7997019	3L_7997019_DEL [dm3] 3L_8003919_DEL [dm6]	TT	T	3.726e^-4	0.721	INTRON nmo
2R	17564553	2R_17564553_SNP [dm3] 2R_21677048_SNP [dm6]	C	A	3.732e^-4	0.721	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19323061	2L_19323061_SNP [dm3] 2L_19323061_SNP [dm6]	G	T	3.733e^-4	0.721	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	20706488	3L_20706488_SNP [dm3] 3L_20713388_SNP [dm6]	A	C	3.737e^-4	0.721	UPSTREAM CG34260 INTRON cmpy
2L	2953553	2L_2953553_DEL [dm3] 2L_2953553_DEL [dm6]	AACA	A	3.738e^-4	0.721	UTR_3_PRIME lilli DOWNSTREAM lilli
3L	5790014	3L_5790014_SNP [dm3] 3L_5796914_SNP [dm6]	A	G	3.738e^-4	0.721	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3R	26456354	3R_26456354_SNP [dm3] 3R_30630632_SNP [dm6]	C	T	3.753e^-4	0.721	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16439849	2L_16439849_SNP [dm3] 2L_16439849_SNP [dm6]	T	C	3.757e^-4	0.721	INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	14553417	3L_14553417_SNP [dm3] 3L_14560317_SNP [dm6]	G	A	3.758e^-4	0.721	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	14970889	3R_14970889_SNP [dm3] 3R_19145167_SNP [dm6]	G	T	3.764e^-4	0.721	INTRON Ppcs
3R	26517895	3R_26517895_SNP [dm3] 3R_30692173_SNP [dm6]	G	A	3.764e^-4	0.721	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22984298	3R_22984298_SNP [dm3] 3R_27158576_SNP [dm6]	T	G	3.766e^-4	0.721	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo
3L	12900630	3L_12900630_SNP [dm3] 3L_12907530_SNP [dm6]	G	C	3.766e^-4	0.721	INTERGENIC
3R	19600752	3R_19600752_SNP [dm3] 3R_23775030_SNP [dm6]	A	C	3.768e^-4	0.721	UPSTREAM CG10208 INTRON Nup98-96	TF binding site mE1_TFBS_HSA
3L	15024943	3L_15024943_INS [dm3] 3L_15031843_INS [dm6]	G	GT	3.771e^-4	0.721	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14131679	3R_14131679_SNP [dm3] 3R_18305957_SNP [dm6]	C	A	3.776e^-4	0.721	DOWNSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_cad
3L	10556553	3L_10556553_SNP [dm3] 3L_10563453_SNP [dm6]	T	A	3.785e^-4	0.721	INTRON A2bp1
3R	18645553	3R_18645553_SNP [dm3] 3R_22819831_SNP [dm6]	C	A	3.793e^-4	0.721	INTERGENIC
2L	17676477	2L_17676477_DEL [dm3] 2L_17676477_DEL [dm6]	GCGACAATGC	A	3.794e^-4	0.721	INTRON CadN
3R	19540832	3R_19540832_SNP [dm3] 3R_23715110_SNP [dm6]	G	A	3.801e^-4	0.721	INTRON nau
3L	11470993	3L_11470993_INS [dm3] 3L_11477893_INS [dm6]	T	TC	3.803e^-4	0.721	INTERGENIC
2R	10510029	2R_10510029_SNP [dm3] 2R_14622524_SNP [dm6]	T	C	3.805e^-4	0.721	UPSTREAM snoRNA:Me28S-U1848 & 4 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5 EXON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	14700742	3R_14700742_SNP [dm3] 3R_18875020_SNP [dm6]	T	C	3.808e^-4	0.721	UPSTREAM CG14298 INTERGENIC
3R	26355196	3R_26355196_INS [dm3] 3R_30529474_INS [dm6]	A	AA	3.814e^-4	0.721	UPSTREAM CR45553 DOWNSTREAM CR45552 INTRON CR45552
3L	4497363	3L_4497363_SNP [dm3] 3L_4497363_SNP [dm6]	T	C	3.820e^-4	0.721	INTRON CG13721	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9423011	3L_9423011_SNP [dm3] 3L_9429911_SNP [dm6]	A	G	3.820e^-4	0.721	UPSTREAM MTF-1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16226254	3R_16226254_SNP [dm3] 3R_20400532_SNP [dm6]	T	G	3.825e^-4	0.721	UTR_3_PRIME Gfrl INTRON Gfrl
2R	8494384	2R_8494384_DEL [dm3] 2R_12606879_DEL [dm6]	TAG	C	3.834e^-4	0.721	INTRON Amph
3R	11267588	3R_11267588_SNP [dm3] 3R_15441866_SNP [dm6]	C	T	3.834e^-4	0.721	UTR_3_PRIME Act88F DOWNSTREAM AdamTS-A	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	19715806	3R_19715806_DEL [dm3] 3R_23890084_DEL [dm6]	GCTAC	A	3.843e^-4	0.721	UPSTREAM Pli DOWNSTREAM TfIIA-S INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_jumu mE1_TFBS_sens
2R	15899842	2R_15899842_SNP [dm3] 2R_20012337_SNP [dm6]	A	G	3.856e^-4	0.721	INTERGENIC
2L	697776	2L_697776_DEL [dm3] 2L_697776_DEL [dm6]	AA	A	3.856e^-4	0.721	INTRON ds
3L	14686453	3L_14686453_SNP [dm3] 3L_14693353_SNP [dm6]	A	G	3.866e^-4	0.721	INTRON ome
3L	23169252	3L_23169252_SNP [dm3] 3L_23176152_SNP [dm6]	G	A	3.866e^-4	0.721	INTRON CG34031
3R	24360688	3R_24360688_SNP [dm3] 3R_28534966_SNP [dm6]	T	G	3.867e^-4	0.721	INTRON Ppn
2L	2217817	2L_2217817_SNP [dm3] 2L_2217817_SNP [dm6]	T	G	3.870e^-4	0.721	UPSTREAM CG15386 & 1 other INTRON mio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21831627	3R_21831627_SNP [dm3] 3R_26005905_SNP [dm6]	T	C	3.870e^-4	0.721	UTR_5_PRIME E_spl_mbeta-HLH DOWNSTREAM CR45039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25052940	3R_25052940_SNP [dm3] 3R_29227218_SNP [dm6]	C	G	3.877e^-4	0.721	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
3L	1863849	3L_1863849_SNP [dm3] 3L_1863849_SNP [dm6]	G	A	3.878e^-4	0.721	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.186e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.004751
In_3R_K	0.034535

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	9.3923	0.0091
In_3R_P	5.33	0.0696
In_3R_K	6.0655	0.0482

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2176 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	12591369	3R_12591369_SNP [dm3] 3R_16765647_SNP [dm6]	C	A	4.839e^-7	0.33	UPSTREAM tre-2 INTRON bxd EXON tre-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11603389	3R_11603389_SNP [dm3] 3R_15777667_SNP [dm6]	A	C	5.053e^-7	0.33	DOWNSTREAM CG4525 INTERGENIC
3L	16483188	3L_16483188_SNP [dm3] 3L_16490088_SNP [dm6]	G	A	5.286e^-7	0.33	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	9107630	X_9107630_SNP [dm3] X_9213597_SNP [dm6]	A	C	1.133e^-6	0.473	INTERGENIC
3R	11603420	3R_11603420_SNP [dm3] 3R_15777698_SNP [dm6]	A	T	1.286e^-6	0.473	DOWNSTREAM CG4525 INTERGENIC
3L	2094525	3L_2094525_SNP [dm3] 3L_2094525_SNP [dm6]	C	T	1.512e^-6	0.473	INTRON sls
3R	11967326	3R_11967326_INS [dm3] 3R_16141604_INS [dm6]	G	GG	2.163e^-6	0.58	INTRON Sb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12590912	3R_12590912_SNP [dm3] 3R_16765190_SNP [dm6]	G	A	3.336e^-6	0.608	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16483138	3L_16483138_SNP [dm3] 3L_16490038_SNP [dm6]	T	G	3.342e^-6	0.608	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15393934	3R_15393934_SNP [dm3] 3R_19568212_SNP [dm6]	A	G	3.976e^-6	0.608	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
3L	16483145	3L_16483145_SNP [dm3] 3L_16490045_SNP [dm6]	C	T	4.043e^-6	0.608	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15393938	3R_15393938_SNP [dm3] 3R_19568216_SNP [dm6]	A	T	4.343e^-6	0.608	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z
3R	12590494	3R_12590494_SNP [dm3] 3R_16764772_SNP [dm6]	G	T	4.408e^-6	0.608	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16483144	3L_16483144_SNP [dm3] 3L_16490044_SNP [dm6]	A	C	4.784e^-6	0.608	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	10179297	2L_10179297_SNP [dm3] 2L_10179297_SNP [dm6]	C	T	4.986e^-6	0.608	INTRON CG44153
X	3085586	X_3085586_SNP [dm3] X_3191553_SNP [dm6]	C	T	5.360e^-6	0.608	INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	5.722e^-6	0.608	INTRON Octbeta2R
3R	12590079	3R_12590079_SNP [dm3] 3R_16764357_SNP [dm6]	G	T	5.836e^-6	0.608	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2094832	3L_2094832_SNP [dm3] 3L_2094832_SNP [dm6]	T	C	6.657e^-6	0.612	SYNONYMOUS_CODING sls
3R	13784701	3R_13784701_SNP [dm3] 3R_17958979_SNP [dm6]	C	T	6.714e^-6	0.612	INTRON cpo
3R	11898025	3R_11898025_SNP [dm3] 3R_16072303_SNP [dm6]	G	A	6.853e^-6	0.612	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9277841	2R_9277841_SNP [dm3] 2R_13390336_SNP [dm6]	A	G	7.421e^-6	0.63	SYNONYMOUS_CODING CG43691
3R	22950351	3R_22950351_SNP [dm3] 3R_27124629_SNP [dm6]	G	T	7.876e^-6	0.63	UTR_5_PRIME CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad
3L	10355353	3L_10355353_SNP [dm3] 3L_10362253_SNP [dm6]	T	A	8.329e^-6	0.63	EXON CR44327	TF binding site BDTNP1_TFBS_dl
3R	11897665	3R_11897665_SNP [dm3] 3R_16071943_SNP [dm6]	A	C	8.401e^-6	0.63	UTR_5_PRIME Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15153994	3R_15153994_SNP [dm3] 3R_19328272_SNP [dm6]	T	A	8.809e^-6	0.635	UPSTREAM CR44175 INTERGENIC
3L	2265280	3L_2265280_SNP [dm3] 3L_2265280_SNP [dm6]	G	A	9.516e^-6	0.642	SYNONYMOUS_CODING ecd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16483131	3L_16483131_SNP [dm3] 3L_16490031_SNP [dm6]	C	A	9.710e^-6	0.642	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	13873658	2L_13873658_SNP [dm3] 2L_13873658_SNP [dm6]	C	T	9.925e^-6	0.642	INTRON CenG1A
2L	18387264	2L_18387264_SNP [dm3] 2L_18387264_SNP [dm6]	A	C	1.110e^-5	0.694	DOWNSTREAM Fas3 INTRON Fas3
3R	12591125	3R_12591125_SNP [dm3] 3R_16765403_SNP [dm6]	G	A	1.194e^-5	0.722	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7669095	2L_7669095_SNP [dm3] 2L_7669095_SNP [dm6]	C	G	1.359e^-5	0.743	INTRON Slob & 1 other
3R	12590937	3R_12590937_SNP [dm3] 3R_16765215_SNP [dm6]	A	C	1.368e^-5	0.743	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13866153	2L_13866153_SNP [dm3] 2L_13866153_SNP [dm6]	A	T	1.412e^-5	0.743	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	3754590	3L_3754590_SNP [dm3] 3L_3754590_SNP [dm6]	T	C	1.429e^-5	0.743	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
3R	26353092	3R_26353092_SNP [dm3] 3R_30527370_SNP [dm6]	A	T	1.434e^-5	0.743	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	13866074	2L_13866074_SNP [dm3] 2L_13866074_SNP [dm6]	A	T	1.466e^-5	0.743	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	13851355	2L_13851355_SNP [dm3] 2L_13851355_SNP [dm6]	A	G	1.539e^-5	0.745	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	4770746	3R_4770746_SNP [dm3] 3R_8945024_SNP [dm6]	A	G	1.602e^-5	0.745	UPSTREAM CG11964 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12590482	3R_12590482_SNP [dm3] 3R_16764760_SNP [dm6]	T	C	1.634e^-5	0.745	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	1.648e^-5	0.745	INTRON nwk
3R	12588668	3R_12588668_SNP [dm3] 3R_16762946_SNP [dm6]	T	C	1.714e^-5	0.745	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3983458	3L_3983458_SNP [dm3] 3L_3983458_SNP [dm6]	T	C	1.737e^-5	0.745	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25534216	3R_25534216_SNP [dm3] 3R_29708494_SNP [dm6]	G	A	1.753e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13935220	2L_13935220_SNP [dm3] 2L_13935220_SNP [dm6]	A	C	1.820e^-5	0.745	UPSTREAM CG16885 INTRON Ance-3
2L	13935214	2L_13935214_SNP [dm3] 2L_13935214_SNP [dm6]	C	G	1.849e^-5	0.745	UPSTREAM CG16885 INTRON Ance-3
3R	12590423	3R_12590423_SNP [dm3] 3R_16764701_SNP [dm6]	A	T	1.870e^-5	0.745	UPSTREAM tre-3 DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22984209	3R_22984209_SNP [dm3] 3R_27158487_SNP [dm6]	A	C	1.907e^-5	0.745	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26547432	3R_26547432_SNP [dm3] 3R_30721710_SNP [dm6]	C	A	2.067e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1051890	2L_1051890_SNP [dm3] 2L_1051890_SNP [dm6]	C	G	2.085e^-5	0.755	UTR_3_PRIME S	TF binding site mE1_TFBS_cad
3L	16736775	3L_16736775_SNP [dm3] 3L_16743675_SNP [dm6]	T	C	2.186e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	17947219	2R_17947219_SNP [dm3] 2R_22059714_SNP [dm6]	C	A	2.192e^-5	0.755	NON_SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	602938	2R_602938_INS [dm3] 2R_4715433_INS [dm6]	A	ATTTAAGCGA	2.204e^-5	0.755	INTRON Nipped-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	9732430	2L_9732430_SNP [dm3] 2L_9732430_SNP [dm6]	C	A	2.264e^-5	0.755	INTRON Nckx30C	TF binding site BDTNP1_TFBS_dl
3R	12588689	3R_12588689_SNP [dm3] 3R_16762967_SNP [dm6]	A	G	2.354e^-5	0.755	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2141428	3L_2141428_SNP [dm3] 3L_2141428_SNP [dm6]	G	A	2.401e^-5	0.755	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10483150	2R_10483150_SNP [dm3] 2R_14595645_SNP [dm6]	A	G	2.536e^-5	0.755	UTR_3_PRIME RpI1 DOWNSTREAM CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10808623	2L_10808623_SNP [dm3] 2L_10808623_SNP [dm6]	G	T	2.537e^-5	0.755	INTRON Nos
3L	9225765	3L_9225765_SNP [dm3] 3L_9232665_SNP [dm6]	C	A	2.541e^-5	0.755	INTERGENIC
2R	14548798	2R_14548798_SNP [dm3] 2R_18661293_SNP [dm6]	G	A	2.631e^-5	0.755	UTR_5_PRIME Gint3 & 1 other UPSTREAM Gint3 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	12581869	3R_12581869_SNP [dm3] 3R_16756147_SNP [dm6]	T	A	2.669e^-5	0.755	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1053347	2L_1053347_SNP [dm3] 2L_1053347_SNP [dm6]	A	G	2.730e^-5	0.755	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12589112	3R_12589112_SNP [dm3] 3R_16763390_SNP [dm6]	A	G	2.877e^-5	0.755	DOWNSTREAM tre-2 INTRON bxd EXON tre-3	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12589603	3R_12589603_SNP [dm3] 3R_16763881_SNP [dm6]	C	T	2.881e^-5	0.755	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	2.963e^-5	0.755	INTRON nwk
2R	19367793	2R_19367793_SNP [dm3] 2R_23480270_SNP [dm6]	G	T	3.020e^-5	0.755	INTRON CG43795
3R	15399255	3R_15399255_SNP [dm3] 3R_19573533_SNP [dm6]	G	A	3.039e^-5	0.755	INTRON Dys
2R	8870973	2R_8870973_SNP [dm3] 2R_12983468_SNP [dm6]	T	C	3.060e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15399259	3R_15399259_SNP [dm3] 3R_19573537_SNP [dm6]	G	A	3.067e^-5	0.755	INTRON Dys
3R	23167640	3R_23167640_SNP [dm3] 3R_27341918_SNP [dm6]	G	A	3.094e^-5	0.755	INTRON CG42534
3L	11641089	3L_11641089_SNP [dm3] 3L_11647989_SNP [dm6]	A	G	3.151e^-5	0.755	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11896481	3R_11896481_SNP [dm3] 3R_16070759_SNP [dm6]	C	T	3.164e^-5	0.755	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22984339	3R_22984339_SNP [dm3] 3R_27158617_SNP [dm6]	T	C	3.374e^-5	0.755	INTRON grass	TF binding site mE1_TFBS_chinmo
2R	8441693	2R_8441693_SNP [dm3] 2R_12554188_SNP [dm6]	A	T	3.400e^-5	0.755	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	26353159	3R_26353159_SNP [dm3] 3R_30527437_SNP [dm6]	A	G	3.457e^-5	0.755	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	13935207	2L_13935207_SNP [dm3] 2L_13935207_SNP [dm6]	T	G	3.505e^-5	0.755	UPSTREAM CG16885 INTRON Ance-3
X	6709973	X_6709973_SNP [dm3] X_6815940_SNP [dm6]	G	T	3.506e^-5	0.755	INTRON iav
3L	2491663	3L_2491663_SNP [dm3] 3L_2491663_SNP [dm6]	C	T	3.521e^-5	0.755	SYNONYMOUS_CODING CG1146 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10700125	3L_10700125_DEL [dm3] 3L_10707025_DEL [dm6]	CA	G	3.599e^-5	0.755	INTERGENIC
3R	26353227	3R_26353227_SNP [dm3] 3R_30527505_SNP [dm6]	C	T	3.600e^-5	0.755	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	11640552	3L_11640552_SNP [dm3] 3L_11647452_SNP [dm6]	C	T	3.665e^-5	0.755	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2L	13954546	2L_13954546_SNP [dm3] 2L_13954546_SNP [dm6]	G	T	3.681e^-5	0.755	INTRON Ance-3
3R	18188513	3R_18188513_SNP [dm3] 3R_22362791_SNP [dm6]	G	T	3.719e^-5	0.755	START_GAINED Muted & 1 other UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13934071	2L_13934071_SNP [dm3] 2L_13934071_SNP [dm6]	C	G	3.791e^-5	0.755	INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad
X	20474238	X_20474238_SNP [dm3] X_20603211_SNP [dm6]	T	A	3.809e^-5	0.755	INTRON RunxA
3L	9462385	3L_9462385_SNP [dm3] 3L_9469285_SNP [dm6]	T	C	3.841e^-5	0.755	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
3R	12581868	3R_12581868_SNP [dm3] 3R_16756146_SNP [dm6]	G	A	3.963e^-5	0.755	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11674396	3R_11674396_SNP [dm3] 3R_15848674_SNP [dm6]	G	T	4.013e^-5	0.755	DOWNSTREAM CG4546 INTRON cv-d
2L	13934087	2L_13934087_SNP [dm3] 2L_13934087_SNP [dm6]	C	T	4.083e^-5	0.755	INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad
3R	20273463	3R_20273463_SNP [dm3] 3R_24447741_SNP [dm6]	G	A	4.103e^-5	0.755	INTRON nAChRalpha1
3L	11642015	3L_11642015_SNP [dm3] 3L_11648915_SNP [dm6]	C	T	4.105e^-5	0.755	SYNONYMOUS_CODING CG7339 UPSTREAM RIOK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3920223	3L_3920223_SNP [dm3] 3L_3920223_SNP [dm6]	C	T	4.136e^-5	0.755	INTRON Eip63F-1
3R	9840977	3R_9840977_SNP [dm3] 3R_14015255_SNP [dm6]	A	G	4.155e^-5	0.755	INTRON rdx
3R	14169042	3R_14169042_SNP [dm3] 3R_18343320_SNP [dm6]	T	C	4.177e^-5	0.755	INTRON CG15803
3L	11640561	3L_11640561_SNP [dm3] 3L_11647461_SNP [dm6]	C	T	4.179e^-5	0.755	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3L	10699554	3L_10699554_SNP [dm3] 3L_10706454_SNP [dm6]	T	A	4.214e^-5	0.755	INTERGENIC
3L	1789388	3L_1789388_SNP [dm3] 3L_1789388_SNP [dm6]	C	A	4.261e^-5	0.755	DOWNSTREAM dlt INTRON alpha-Spec
2L	17710653	2L_17710653_SNP [dm3] 2L_17710653_SNP [dm6]	A	T	4.383e^-5	0.755	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11640582	3L_11640582_SNP [dm3] 3L_11647482_SNP [dm6]	C	G	4.421e^-5	0.755	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3L	11640621	3L_11640621_SNP [dm3] 3L_11647521_SNP [dm6]	T	G	4.455e^-5	0.755	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2L	13851909	2L_13851909_SNP [dm3] 2L_13851909_SNP [dm6]	C	T	4.534e^-5	0.755	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11666647	3L_11666647_SNP [dm3] 3L_11673547_SNP [dm6]	A	T	4.638e^-5	0.755	INTRON CG32085
2R	6395315	2R_6395315_DEL [dm3] 2R_10507810_DEL [dm6]	TT	T	4.646e^-5	0.755	UTR_3_PRIME lola INTRON lola
3R	10182916	3R_10182916_SNP [dm3] 3R_14357194_SNP [dm6]	C	T	4.740e^-5	0.755	INTRON NK7.1
3R	10585066	3R_10585066_SNP [dm3] 3R_14759344_SNP [dm6]	A	T	4.773e^-5	0.755	INTRON jvl
3L	13137158	3L_13137158_SNP [dm3] 3L_13144058_SNP [dm6]	C	T	4.801e^-5	0.755	INTERGENIC
3L	1250858	3L_1250858_SNP [dm3] 3L_1250858_SNP [dm6]	C	G	4.805e^-5	0.755	START_GAINED CG9129 UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
X	16430576	X_16430576_INS [dm3] X_16536543_INS [dm6]	A	ACAATA	4.822e^-5	0.755	INTERGENIC
3R	22949636	3R_22949636_SNP [dm3] 3R_27123914_SNP [dm6]	G	A	4.850e^-5	0.755	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8546074	3L_8546074_SNP [dm3] 3L_8552974_SNP [dm6]	G	C	4.892e^-5	0.755	INTRON rhea
2R	19367651	2R_19367651_SNP [dm3] 2R_23480128_SNP [dm6]	G	A	4.917e^-5	0.755	INTRON CG43795
2L	18583948	2L_18583948_SNP [dm3] 2L_18583948_SNP [dm6]	G	C	4.929e^-5	0.755	INTRON Pde11	transposable element FlyBase
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	4.956e^-5	0.755	INTRON nwk
3R	21392724	3R_21392724_SNP [dm3] 3R_25567002_SNP [dm6]	C	T	4.987e^-5	0.755	INTRON msi
X	1592598	X_1592598_SNP [dm3] X_1698565_SNP [dm6]	G	A	5.063e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19367890	2R_19367890_SNP [dm3] 2R_23480367_SNP [dm6]	T	G	5.068e^-5	0.755	INTRON CG43795
X	5399926	X_5399926_SNP [dm3] X_5505893_SNP [dm6]	A	G	5.118e^-5	0.755	UPSTREAM CR45519 INTERGENIC
3R	12808299	3R_12808299_SNP [dm3] 3R_16982577_SNP [dm6]	A	G	5.121e^-5	0.755	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22952396	3R_22952396_DEL [dm3] 3R_27126674_DEL [dm6]	TT	T	5.182e^-5	0.755	INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20273467	3R_20273467_SNP [dm3] 3R_24447745_SNP [dm6]	G	T	5.224e^-5	0.755	INTRON nAChRalpha1
3R	16308101	3R_16308101_SNP [dm3] 3R_20482379_SNP [dm6]	T	A	5.245e^-5	0.755	INTRON Gfrl
2R	14548795	2R_14548795_SNP [dm3] 2R_18661290_SNP [dm6]	T	C	5.297e^-5	0.755	START_GAINED Gint3 & 1 other UTR_5_PRIME Gint3 & 1 other UPSTREAM Gint3 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17665473	2R_17665473_SNP [dm3] 2R_21777968_SNP [dm6]	T	C	5.401e^-5	0.755	INTERGENIC
3L	14200944	3L_14200944_SNP [dm3] 3L_14207844_SNP [dm6]	G	A	5.413e^-5	0.755	INTRON nuf
3R	20273438	3R_20273438_SNP [dm3] 3R_24447716_SNP [dm6]	A	G	5.432e^-5	0.755	INTRON nAChRalpha1
3L	1256888	3L_1256888_SNP [dm3] 3L_1256888_SNP [dm6]	A	G	5.538e^-5	0.755	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
2L	5501606	2L_5501606_SNP [dm3] 2L_5501606_SNP [dm6]	T	G	5.582e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10483497	2R_10483497_SNP [dm3] 2R_14595992_SNP [dm6]	C	T	5.594e^-5	0.755	SYNONYMOUS_CODING RpI1 DOWNSTREAM CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18042415	2R_18042415_SNP [dm3] 2R_22154910_SNP [dm6]	G	A	5.610e^-5	0.755	INTRON a	TF binding site BDTNP1_TFBS_da
2L	21976917	2L_21976917_SNP [dm3] 2L_21976917_SNP [dm6]	T	C	5.615e^-5	0.755	INTERGENIC
3R	16616726	3R_16616726_SNP [dm3] 3R_20791004_SNP [dm6]	A	G	5.636e^-5	0.755	INTRON Syp
3R	22613955	3R_22613955_DEL [dm3] 3R_26788233_DEL [dm6]	GG	G	5.669e^-5	0.755	INTERGENIC
3R	22984236	3R_22984236_SNP [dm3] 3R_27158514_SNP [dm6]	G	A	5.684e^-5	0.755	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17879472	3R_17879472_SNP [dm3] 3R_22053750_SNP [dm6]	T	C	5.747e^-5	0.755	INTRON how
X	9107672	X_9107672_SNP [dm3] X_9213639_SNP [dm6]	G	C	5.748e^-5	0.755	INTERGENIC
3R	15245740	3R_15245740_SNP [dm3] 3R_19420018_SNP [dm6]	A	G	5.831e^-5	0.755	INTRON CG31221
2R	17665506	2R_17665506_SNP [dm3] 2R_21778001_SNP [dm6]	G	A	5.881e^-5	0.755	INTERGENIC
3L	3920233	3L_3920233_SNP [dm3] 3L_3920233_SNP [dm6]	G	A	5.926e^-5	0.755	INTRON Eip63F-1
2R	14821682	2R_14821682_SNP [dm3] 2R_18934177_SNP [dm6]	A	T	5.939e^-5	0.755	INTRON sano
3R	12709503	3R_12709503_SNP [dm3] 3R_16883781_SNP [dm6]	A	G	5.962e^-5	0.755	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3L	5523789	3L_5523789_SNP [dm3] 3L_5530689_SNP [dm6]	T	C	5.968e^-5	0.755	INTERGENIC
3R	11861591	3R_11861591_SNP [dm3] 3R_16035869_SNP [dm6]	C	A	5.969e^-5	0.755	INTRON pnr
2L	10869261	2L_10869261_SNP [dm3] 2L_10869261_SNP [dm6]	G	C	5.978e^-5	0.755	UPSTREAM CG12517 INTERGENIC
3L	16756078	3L_16756078_SNP [dm3] 3L_16762978_SNP [dm6]	A	C	5.995e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	18378436	3R_18378436_SNP [dm3] 3R_22552714_SNP [dm6]	A	T	6.058e^-5	0.755	UPSTREAM bond & 1 other INTRON bond
2R	18984608	2R_18984608_INS [dm3] 2R_23097085_INS [dm6]	C	CGACCATGCCC...	6.058e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	9107662	X_9107662_SNP [dm3] X_9213629_SNP [dm6]	A	T	6.077e^-5	0.755	INTERGENIC
3R	22980146	3R_22980146_SNP [dm3] 3R_27154424_SNP [dm6]	T	A	6.092e^-5	0.755	INTRON Men-b
3R	26177514	3R_26177514_SNP [dm3] 3R_30351792_SNP [dm6]	G	A	6.113e^-5	0.755	INTRON hdc
X	5399910	X_5399910_SNP [dm3] X_5505877_SNP [dm6]	T	C	6.140e^-5	0.755	UPSTREAM CR45519 INTERGENIC
3L	16026801	3L_16026801_SNP [dm3] 3L_16033701_SNP [dm6]	G	A	6.168e^-5	0.755	UPSTREAM CG42716 & 2 others DOWNSTREAM Notum INTERGENIC
2L	21976772	2L_21976772_SNP [dm3] 2L_21976772_SNP [dm6]	T	C	6.171e^-5	0.755	INTERGENIC
3L	2095359	3L_2095359_SNP [dm3] 3L_2095359_SNP [dm6]	A	T	6.210e^-5	0.755	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3R	11628406	3R_11628406_SNP [dm3] 3R_15802684_SNP [dm6]	G	A	6.276e^-5	0.755	SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13062616	3L_13062616_SNP [dm3] 3L_13069516_SNP [dm6]	A	G	6.282e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5052674	X_5052674_SNP [dm3] X_5158641_SNP [dm6]	C	G	6.296e^-5	0.755	INTRON rg & 1 other
2R	19009892	2R_19009892_SNP [dm3] 2R_23122369_SNP [dm6]	C	G	6.360e^-5	0.755	INTERGENIC
3L	9463159	3L_9463159_SNP [dm3] 3L_9470059_SNP [dm6]	T	A	6.363e^-5	0.755	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22984180	3R_22984180_SNP [dm3] 3R_27158458_SNP [dm6]	G	A	6.587e^-5	0.772	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13155069	2L_13155069_SNP [dm3] 2L_13155069_SNP [dm6]	T	C	6.633e^-5	0.772	INTERGENIC
3R	22217008	3R_22217008_SNP [dm3] 3R_26391286_SNP [dm6]	G	A	6.655e^-5	0.772	INTERGENIC
3L	16150759	3L_16150759_SNP [dm3] 3L_16157659_SNP [dm6]	C	T	6.665e^-5	0.772	INTRON CG5151
3R	17879508	3R_17879508_SNP [dm3] 3R_22053786_SNP [dm6]	C	G	6.852e^-5	0.775	INTRON how	TF binding site BDTNP1_TFBS_dl
2L	7237596	2L_7237596_SNP [dm3] 2L_7237596_SNP [dm6]	C	T	6.870e^-5	0.775	INTRON Ndae1
2L	12497198	2L_12497198_SNP [dm3] 2L_12497198_SNP [dm6]	T	C	6.949e^-5	0.775	NON_SYNONYMOUS_CODING t-cup INTRON bun
3R	22984541	3R_22984541_SNP [dm3] 3R_27158819_SNP [dm6]	T	G	6.992e^-5	0.775	SYNONYMOUS_CODING grass
3R	12591600	3R_12591600_SNP [dm3] 3R_16765878_SNP [dm6]	C	A	7.007e^-5	0.775	INTRON bxd EXON tre-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11640624	3L_11640624_SNP [dm3] 3L_11647524_SNP [dm6]	T	C	7.016e^-5	0.775	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2R	16852411	2R_16852411_SNP [dm3] 2R_20964906_SNP [dm6]	C	T	7.020e^-5	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9925980	2L_9925980_SNP [dm3] 2L_9925980_SNP [dm6]	G	T	7.150e^-5	0.775	INTRON CG42366
2L	8154272	2L_8154272_SNP [dm3] 2L_8154272_SNP [dm6]	T	A	7.208e^-5	0.775	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad
3L	1252274	3L_1252274_SNP [dm3] 3L_1252274_SNP [dm6]	A	G	7.277e^-5	0.775	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	7.283e^-5	0.775	INTRON nwk
3L	9472990	3L_9472990_SNP [dm3] 3L_9479890_SNP [dm6]	C	T	7.285e^-5	0.775	SYNONYMOUS_CODING Jarid2
3R	17879485	3R_17879485_DEL [dm3] 3R_22053763_DEL [dm6]	TGA	T	7.298e^-5	0.775	INTRON how
3R	20273471	3R_20273471_SNP [dm3] 3R_24447749_SNP [dm6]	G	A	7.302e^-5	0.775	INTRON nAChRalpha1
3R	16616779	3R_16616779_SNP [dm3] 3R_20791057_SNP [dm6]	T	C	7.309e^-5	0.775	INTRON Syp
3L	10759083	3L_10759083_SNP [dm3] 3L_10765983_SNP [dm6]	G	C	7.447e^-5	0.776	INTERGENIC
3L	10688283	3L_10688283_SNP [dm3] 3L_10695183_SNP [dm6]	C	T	7.462e^-5	0.776	SYNONYMOUS_CODING NijA
3L	18822982	3L_18822982_SNP [dm3] 3L_18829882_SNP [dm6]	T	C	7.480e^-5	0.776	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3R	17933528	3R_17933528_SNP [dm3] 3R_22107806_SNP [dm6]	C	T	7.520e^-5	0.776	INTRON CG5778
3L	4496786	3L_4496786_SNP [dm3] 3L_4496786_SNP [dm6]	T	A	7.582e^-5	0.776	DOWNSTREAM CG13721 INTERGENIC	TF binding site mE1_TFBS_inv
2R	19540466	2R_19540466_SNP [dm3] 2R_23652943_SNP [dm6]	T	C	7.671e^-5	0.776	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13858052	3R_13858052_SNP [dm3] 3R_18032330_SNP [dm6]	C	A	7.677e^-5	0.776	INTERGENIC
2L	13875731	2L_13875731_SNP [dm3] 2L_13875731_SNP [dm6]	C	T	7.762e^-5	0.776	INTRON CenG1A
2R	18465532	2R_18465532_SNP [dm3] 2R_22578027_SNP [dm6]	C	T	7.767e^-5	0.776	INTRON dnr1
3R	17879496	3R_17879496_SNP [dm3] 3R_22053774_SNP [dm6]	A	T	7.786e^-5	0.776	INTRON how
2L	4740662	2L_4740662_SNP [dm3] 2L_4740662_SNP [dm6]	G	A	7.820e^-5	0.776	INTRON CG15630
X	9205787	X_9205787_SNP [dm3] X_9311754_SNP [dm6]	G	A	7.823e^-5	0.776	INTERGENIC
3R	24450815	3R_24450815_SNP [dm3] 3R_28625093_SNP [dm6]	A	C	8.008e^-5	0.776	INTRON CG10011
2R	19139394	2R_19139394_SNP [dm3] 2R_23251871_SNP [dm6]	A	C	8.012e^-5	0.776	INTERGENIC
3L	13137152	3L_13137152_SNP [dm3] 3L_13144052_SNP [dm6]	A	G	8.050e^-5	0.776	INTERGENIC
3R	23885495	3R_23885495_INS [dm3] 3R_28059773_INS [dm6]	T	TC	8.074e^-5	0.776	INTRON CG34362
3R	12590711	3R_12590711_SNP [dm3] 3R_16764989_SNP [dm6]	T	A	8.126e^-5	0.776	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	15076025	2R_15076025_SNP [dm3] 2R_19188520_SNP [dm6]	G	A	8.185e^-5	0.776	INTRON hppy
2L	16318586	2L_16318586_SNP [dm3] 2L_16318586_SNP [dm6]	T	A	8.189e^-5	0.776	INTRON cact	TF binding site BDTNP1_TFBS_twi
3L	4491256	3L_4491256_SNP [dm3] 3L_4491256_SNP [dm6]	A	G	8.229e^-5	0.776	UPSTREAM CG13722 INTERGENIC
3R	12590860	3R_12590860_SNP [dm3] 3R_16765138_SNP [dm6]	T	C	8.235e^-5	0.776	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3811785	3L_3811785_SNP [dm3] 3L_3811785_SNP [dm6]	G	T	8.236e^-5	0.776	UPSTREAM CG32263 INTRON CG12006	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24541698	3R_24541698_SNP [dm3] 3R_28715976_SNP [dm6]	C	A	8.379e^-5	0.786	SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16691767	3L_16691767_SNP [dm3] 3L_16698667_SNP [dm6]	T	A	8.577e^-5	0.79	DOWNSTREAM CR45179 INTRON Lasp & 1 other
2R	13640972	2R_13640972_INS [dm3] 2R_17753467_INS [dm6]	T	TATAT	8.577e^-5	0.79	DOWNSTREAM CG6385 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15153940	3R_15153940_SNP [dm3] 3R_19328218_SNP [dm6]	T	C	8.612e^-5	0.79	UPSTREAM CR44175 INTERGENIC
2R	12655564	2R_12655564_SNP [dm3] 2R_16768059_SNP [dm6]	C	T	8.622e^-5	0.79	SYNONYMOUS_CODING CG5348 UTR_3_PRIME CG5348 INTRON unc-104
3L	13137176	3L_13137176_SNP [dm3] 3L_13144076_SNP [dm6]	T	G	8.633e^-5	0.79	INTERGENIC
3L	13376315	3L_13376315_SNP [dm3] 3L_13383215_SNP [dm6]	T	C	8.716e^-5	0.794	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4262800	3L_4262800_DEL [dm3] 3L_4262800_DEL [dm6]	TC	T	8.806e^-5	0.796	UTR_5_PRIME VhaM9.7-a UPSTREAM CG11586 & 1 other INTRON VhaM9.7-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	9612017	3L_9612017_SNP [dm3] 3L_9618917_SNP [dm6]	A	T	8.856e^-5	0.796	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	13867644	2L_13867644_SNP [dm3] 2L_13867644_SNP [dm6]	A	G	8.896e^-5	0.796	UPSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9456772	2L_9456772_SNP [dm3] 2L_9456772_SNP [dm6]	G	A	8.992e^-5	0.796	INTRON numb	regulatory region REDfly_CRMs
3L	13137185	3L_13137185_SNP [dm3] 3L_13144085_SNP [dm6]	T	G	9.059e^-5	0.796	INTERGENIC
3L	11920196	3L_11920196_SNP [dm3] 3L_11927096_SNP [dm6]	G	C	9.165e^-5	0.796	UPSTREAM byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	14155283	3L_14155283_DEL [dm3] 3L_14162183_DEL [dm6]	TGT	T	9.273e^-5	0.796	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9455090	3L_9455090_SNP [dm3] 3L_9461990_SNP [dm6]	C	A	9.292e^-5	0.796	UTR_5_PRIME CG44838 UPSTREAM CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17711141	2L_17711141_SNP [dm3] 2L_17711141_SNP [dm6]	T	C	9.296e^-5	0.796	INTRON CadN	TF binding site mE1_TFBS_sbb
3R	22954179	3R_22954179_SNP [dm3] 3R_27128457_SNP [dm6]	G	A	9.366e^-5	0.796	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8642024	2L_8642024_SNP [dm3] 2L_8642024_SNP [dm6]	G	A	9.375e^-5	0.796	INTRON Sema-1a
2L	11656651	2L_11656651_SNP [dm3] 2L_11656651_SNP [dm6]	C	T	9.402e^-5	0.796	UPSTREAM CG43167 INTERGENIC
2R	12871276	2R_12871276_INS [dm3] 2R_16983771_INS [dm6]	C	TA	9.412e^-5	0.796	INTRON Cbp53E
3L	14155274	3L_14155274_SNP [dm3] 3L_14162174_SNP [dm6]	G	A	9.458e^-5	0.796	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21392708	3R_21392708_SNP [dm3] 3R_25566986_SNP [dm6]	A	T	9.480e^-5	0.796	INTRON msi
3R	10592507	3R_10592507_SNP [dm3] 3R_14766785_SNP [dm6]	C	G	9.517e^-5	0.796	INTRON jvl
2L	5501450	2L_5501450_DEL [dm3] 2L_5501450_DEL [dm6]	ATACCTA	A	9.544e^-5	0.796	INTERGENIC
3L	10814142	3L_10814142_SNP [dm3] 3L_10821042_SNP [dm6]	A	C	9.572e^-5	0.796	INTERGENIC
3L	11640789	3L_11640789_SNP [dm3] 3L_11647689_SNP [dm6]	T	C	9.630e^-5	0.796	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2R	10483916	2R_10483916_SNP [dm3] 2R_14596411_SNP [dm6]	C	T	9.641e^-5	0.796	DOWNSTREAM CG12869 INTRON RpI1	TF binding site mE1_TFBS_cad
2L	21901118	2L_21901118_SNP [dm3] 2L_21901118_SNP [dm6]	A	G	9.658e^-5	0.796	INTERGENIC
X	10619271	X_10619271_INS [dm3] X_10725238_INS [dm6]	T	TT	9.718e^-5	0.796	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	22984243	3R_22984243_SNP [dm3] 3R_27158521_SNP [dm6]	A	G	9.751e^-5	0.796	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6619770	2L_6619770_SNP [dm3] 2L_6619770_SNP [dm6]	G	A	9.760e^-5	0.796	DOWNSTREAM CR44913 INTRON CG11320
3R	20998498	3R_20998498_SNP [dm3] 3R_25172776_SNP [dm6]	A	T	9.917e^-5	0.798	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	8316795	3L_8316795_SNP [dm3] 3L_8323695_SNP [dm6]	G	T	9.931e^-5	0.798	INTERGENIC
2L	4297903	2L_4297903_SNP [dm3] 2L_4297903_SNP [dm6]	C	A	9.964e^-5	0.798	INTRON tutl
2L	22170733	2L_22170733_SNP [dm3] 2L_22170733_SNP [dm6]	A	T	9.978e^-5	0.798	DOWNSTREAM CR44809 INTERGENIC
3R	13026114	3R_13026114_SNP [dm3] 3R_17200392_SNP [dm6]	G	A	9.995e^-5	0.798	INTRON Mur89F
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	1.007e^-4	0.8	INTRON nwk
3R	5954335	3R_5954335_SNP [dm3] 3R_10128613_SNP [dm6]	T	A	1.019e^-4	0.802	INTRON tws	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11603550	3R_11603550_SNP [dm3] 3R_15777828_SNP [dm6]	T	C	1.023e^-4	0.802	DOWNSTREAM CG4525 INTERGENIC
3L	4191929	3L_4191929_SNP [dm3] 3L_4191929_SNP [dm6]	G	A	1.035e^-4	0.802	INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad
3L	8872037	3L_8872037_SNP [dm3] 3L_8878937_SNP [dm6]	G	A	1.036e^-4	0.802	INTRON dally	TF binding site mE1_TFBS_kn
3L	5252348	3L_5252348_SNP [dm3] 3L_5259248_SNP [dm6]	C	G	1.069e^-4	0.802	INTRON shep
3R	8154299	3R_8154299_SNP [dm3] 3R_12328577_SNP [dm6]	T	C	1.072e^-4	0.802	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
2R	8441692	2R_8441692_SNP [dm3] 2R_12554187_SNP [dm6]	C	A	1.079e^-4	0.802	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
X	18842037	X_18842037_SNP [dm3] X_18948004_SNP [dm6]	A	G	1.079e^-4	0.802	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4242574	X_4242574_SNP [dm3] X_4348541_SNP [dm6]	G	C	1.082e^-4	0.802	INTRON norpA
3R	13206697	3R_13206697_SNP [dm3] 3R_17380975_SNP [dm6]	G	T	1.086e^-4	0.802	INTRON Brf & 1 other
3L	10886107	3L_10886107_SNP [dm3] 3L_10893007_SNP [dm6]	A	G	1.094e^-4	0.802	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	3095689	2L_3095689_SNP [dm3] 2L_3095689_SNP [dm6]	C	T	1.099e^-4	0.802	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	2265904	3L_2265904_SNP [dm3] 3L_2265904_SNP [dm6]	G	A	1.103e^-4	0.802	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11028887	3L_11028887_SNP [dm3] 3L_11035787_SNP [dm6]	A	G	1.105e^-4	0.802	DOWNSTREAM CG43693 EXON CR44547	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26355196	3R_26355196_INS [dm3] 3R_30529474_INS [dm6]	A	AA	1.107e^-4	0.802	UPSTREAM CR45553 DOWNSTREAM CR45552 INTRON CR45552
3R	11967596	3R_11967596_SNP [dm3] 3R_16141874_SNP [dm6]	A	T	1.108e^-4	0.802	NON_SYNONYMOUS_CODING Sb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3920463	3L_3920463_SNP [dm3] 3L_3920463_SNP [dm6]	C	G	1.118e^-4	0.802	INTRON Eip63F-1
3R	22984341	3R_22984341_SNP [dm3] 3R_27158619_SNP [dm6]	T	A	1.119e^-4	0.802	INTRON grass	TF binding site mE1_TFBS_chinmo
3R	13815893	3R_13815893_INS [dm3] 3R_17990171_INS [dm6]	T	TCT	1.125e^-4	0.802	INTRON cpo	TF binding site mE1_TFBS_inv
2L	10294344	2L_10294344_SNP [dm3] 2L_10294344_SNP [dm6]	A	T	1.130e^-4	0.802	INTRON Hand	regulatory region REDfly_CRMs
3R	8444106	3R_8444106_SNP [dm3] 3R_12618384_SNP [dm6]	T	A	1.131e^-4	0.802	DOWNSTREAM CR44942 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22987040	3R_22987040_SNP [dm3] 3R_27161318_SNP [dm6]	C	T	1.136e^-4	0.802	UTR_5_PRIME CG5909
3L	14708125	3L_14708125_SNP [dm3] 3L_14715025_SNP [dm6]	T	C	1.141e^-4	0.802	INTRON ome
2L	16798584	2L_16798584_SNP [dm3] 2L_16798584_SNP [dm6]	C	G	1.141e^-4	0.802	UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb INTERGENIC
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	1.144e^-4	0.802	INTERGENIC
3L	16483094	3L_16483094_SNP [dm3] 3L_16489994_SNP [dm6]	A	G	1.144e^-4	0.802	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4988796	X_4988796_SNP [dm3] X_5094763_SNP [dm6]	T	A	1.147e^-4	0.802	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17935304	3L_17935304_SNP [dm3] 3L_17942204_SNP [dm6]	C	T	1.147e^-4	0.802	INTRON CG43174
2L	13874644	2L_13874644_SNP [dm3] 2L_13874644_SNP [dm6]	T	G	1.159e^-4	0.802	INTRON CenG1A
2R	6674120	2R_6674120_SNP [dm3] 2R_10786615_SNP [dm6]	G	C	1.160e^-4	0.802	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12590495	3R_12590495_SNP [dm3] 3R_16764773_SNP [dm6]	G	T	1.160e^-4	0.802	DOWNSTREAM tre-1 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7668864	2L_7668864_SNP [dm3] 2L_7668864_SNP [dm6]	C	T	1.161e^-4	0.802	INTRON Slob & 1 other
2L	847470	2L_847470_SNP [dm3] 2L_847470_SNP [dm6]	A	T	1.163e^-4	0.802	INTRON drongo
3R	11040490	3R_11040490_SNP [dm3] 3R_15214768_SNP [dm6]	T	G	1.168e^-4	0.802	UTR_3_PRIME CG4210 & 1 other
3L	2095240	3L_2095240_SNP [dm3] 3L_2095240_SNP [dm6]	T	G	1.169e^-4	0.802	NON_SYNONYMOUS_CODING sls
2L	14255720	2L_14255720_SNP [dm3] 2L_14255720_SNP [dm6]	T	C	1.170e^-4	0.802	INTERGENIC
3R	12589755	3R_12589755_SNP [dm3] 3R_16764033_SNP [dm6]	A	G	1.183e^-4	0.802	UPSTREAM tre-3 INTRON bxd EXON tre-2	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22951404	3R_22951404_SNP [dm3] 3R_27125682_SNP [dm6]	A	G	1.184e^-4	0.802	SYNONYMOUS_CODING CG6051 UPSTREAM CG6059	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	14714381	2L_14714381_SNP [dm3] 2L_14714381_SNP [dm6]	T	A	1.186e^-4	0.802	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
X	11574857	X_11574857_SNP [dm3] X_11680824_SNP [dm6]	G	C	1.186e^-4	0.802	INTRON bif	TF binding site BDTNP1_TFBS_dl
X	16223466	X_16223466_SNP [dm3] X_16329433_SNP [dm6]	G	T	1.186e^-4	0.802	DOWNSTREAM CalpC INTRON CG9919	TF binding site mE1_TFBS_HSA
3R	22984190	3R_22984190_SNP [dm3] 3R_27158468_SNP [dm6]	A	T	1.196e^-4	0.802	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13588278	3R_13588278_SNP [dm3] 3R_17762556_SNP [dm6]	A	G	1.203e^-4	0.802	UTR_5_PRIME TyrR UPSTREAM TyrR
3R	22994568	3R_22994568_SNP [dm3] 3R_27168846_SNP [dm6]	A	C	1.205e^-4	0.802	INTERGENIC	regulatory region REDfly_CRMs
2R	14341107	2R_14341107_SNP [dm3] 2R_18453602_SNP [dm6]	G	A	1.213e^-4	0.802	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
3L	21103611	3L_21103611_SNP [dm3] 3L_21110511_SNP [dm6]	A	G	1.219e^-4	0.802	INTRON ko	regulatory region REDfly_CRMs
2R	13144424	2R_13144424_SNP [dm3] 2R_17256919_SNP [dm6]	A	C	1.219e^-4	0.802	DOWNSTREAM CG43108 INTRON mbl
2L	12420428	2L_12420428_SNP [dm3] 2L_12420428_SNP [dm6]	A	G	1.221e^-4	0.802	INTRON vir-1
3R	16960009	3R_16960009_SNP [dm3] 3R_21134287_SNP [dm6]	C	T	1.222e^-4	0.802	UTR_5_PRIME Ubpy UPSTREAM CG7009	TF binding site BDTNP1_TFBS_dl
3R	26169319	3R_26169319_INS [dm3] 3R_30343597_INS [dm6]	C	CTAC	1.231e^-4	0.802	INTRON hdc
3R	22984247	3R_22984247_SNP [dm3] 3R_27158525_SNP [dm6]	C	G	1.233e^-4	0.802	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22493956	3R_22493956_SNP [dm3] 3R_26668234_SNP [dm6]	G	A	1.245e^-4	0.802	INTRON beat-VII	TF binding site mE1_TFBS_inv
3R	22985965	3R_22985965_SNP [dm3] 3R_27160243_SNP [dm6]	T	C	1.254e^-4	0.802	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
3R	15997833	3R_15997833_INS [dm3] 3R_20172111_INS [dm6]	G	GGCAGTAGATGGAAAG...	1.261e^-4	0.802	INTRON CG5023
2L	9375065	2L_9375065_SNP [dm3] 2L_9375065_SNP [dm6]	T	G	1.273e^-4	0.802	INTRON Shawl
3R	22984532	3R_22984532_SNP [dm3] 3R_27158810_SNP [dm6]	C	A	1.274e^-4	0.802	SYNONYMOUS_CODING grass
3L	13939562	3L_13939562_SNP [dm3] 3L_13946462_SNP [dm6]	G	T	1.280e^-4	0.802	INTRON CG32137
2R	4552999	2R_4552999_SNP [dm3] 2R_8665494_SNP [dm6]	T	A	1.280e^-4	0.802	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10484430	2R_10484430_SNP [dm3] 2R_14596925_SNP [dm6]	G	T	1.285e^-4	0.802	SYNONYMOUS_CODING RpI1
3L	3023532	3L_3023532_SNP [dm3] 3L_3023532_SNP [dm6]	C	T	1.287e^-4	0.802	DOWNSTREAM aly INTERGENIC
X	17556599	X_17556599_SNP [dm3] X_17662566_SNP [dm6]	A	G	1.290e^-4	0.802	SYNONYMOUS_CODING beta-Spec	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5728467	X_5728467_SNP [dm3] X_5834434_SNP [dm6]	T	C	1.294e^-4	0.802	SYNONYMOUS_CODING CG15765
3R	26456121	3R_26456121_SNP [dm3] 3R_30630399_SNP [dm6]	T	C	1.300e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_cad
X	4936384	X_4936384_INS [dm3] X_5042351_INS [dm6]	T	TGTTTTTG	1.304e^-4	0.802	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24895732	3R_24895732_SNP [dm3] 3R_29070010_SNP [dm6]	A	G	1.307e^-4	0.802	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	10480241	2R_10480241_INS [dm3] 2R_14592736_INS [dm6]	A	ATA	1.314e^-4	0.802	UTR_5_PRIME CG12869	TF binding site mE1_TFBS_cad
3R	22983147	3R_22983147_SNP [dm3] 3R_27157425_SNP [dm6]	A	G	1.316e^-4	0.802	UTR_3_PRIME Men-b UPSTREAM grass DOWNSTREAM Men-b	TF binding site mE1_TFBS_Trl
2L	21901075	2L_21901075_SNP [dm3] 2L_21901075_SNP [dm6]	A	T	1.326e^-4	0.802	INTERGENIC
3L	3920466	3L_3920466_SNP [dm3] 3L_3920466_SNP [dm6]	T	G	1.327e^-4	0.802	INTRON Eip63F-1
X	16989717	X_16989717_SNP [dm3] X_17095684_SNP [dm6]	G	A	1.327e^-4	0.802	INTRON CG4991 & 1 other
2L	7668877	2L_7668877_SNP [dm3] 2L_7668877_SNP [dm6]	C	T	1.328e^-4	0.802	INTRON Slob & 1 other
3L	9597363	3L_9597363_SNP [dm3] 3L_9604263_SNP [dm6]	T	A	1.330e^-4	0.802	INTRON CG3280
2R	7130688	2R_7130688_SNP [dm3] 2R_11243183_SNP [dm6]	G	C	1.335e^-4	0.802	UPSTREAM Listericin INTERGENIC
2L	6974958	2L_6974958_SNP [dm3] 2L_6974958_SNP [dm6]	C	A	1.340e^-4	0.802	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	11603555	3R_11603555_SNP [dm3] 3R_15777833_SNP [dm6]	C	T	1.342e^-4	0.802	DOWNSTREAM CG4525 INTERGENIC
X	19880874	X_19880874_SNP [dm3] X_19986841_SNP [dm6]	C	T	1.342e^-4	0.802	INTERGENIC
3R	11628453	3R_11628453_SNP [dm3] 3R_15802731_SNP [dm6]	C	T	1.343e^-4	0.802	NON_SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4149105	2R_4149105_SNP [dm3] 2R_8261600_SNP [dm6]	G	A	1.344e^-4	0.802	UPSTREAM CG2291 INTERGENIC
3R	22976799	3R_22976799_SNP [dm3] 3R_27151077_SNP [dm6]	A	G	1.356e^-4	0.802	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9463947	3L_9463947_SNP [dm3] 3L_9470847_SNP [dm6]	G	A	1.357e^-4	0.802	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
2L	13125396	2L_13125396_SNP [dm3] 2L_13125396_SNP [dm6]	G	A	1.360e^-4	0.802	INTERGENIC
3L	2095404	3L_2095404_SNP [dm3] 3L_2095404_SNP [dm6]	C	T	1.364e^-4	0.802	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12608505	3L_12608505_SNP [dm3] 3L_12615405_SNP [dm6]	T	G	1.377e^-4	0.802	INTRON caup	TF binding site mE1_TFBS_cad
2L	14714418	2L_14714418_SNP [dm3] 2L_14714418_SNP [dm6]	C	T	1.379e^-4	0.802	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
3R	9947840	3R_9947840_SNP [dm3] 3R_14122118_SNP [dm6]	G	T	1.391e^-4	0.802	SPLICE_SITE_REGION Abi UTR_5_PRIME Abi UPSTREAM twf INTRON Abi	TF binding site mE1_TFBS_cad
3R	11863394	3R_11863394_INS [dm3] 3R_16037672_INS [dm6]	T	TGT	1.396e^-4	0.802	INTRON pnr
2L	10181386	2L_10181386_SNP [dm3] 2L_10181386_SNP [dm6]	A	T	1.397e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10906408	2L_10906408_SNP [dm3] 2L_10906408_SNP [dm6]	C	T	1.399e^-4	0.802	UTR_3_PRIME CG7309
3R	11485169	3R_11485169_SNP [dm3] 3R_15659447_SNP [dm6]	T	C	1.415e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15121045	2R_15121045_SNP [dm3] 2R_19233540_SNP [dm6]	G	C	1.417e^-4	0.802	INTRON cora
2R	17941153	2R_17941153_SNP [dm3] 2R_22053648_SNP [dm6]	T	C	1.418e^-4	0.802	INTERGENIC
3L	10921939	3L_10921939_SNP [dm3] 3L_10928839_SNP [dm6]	T	G	1.419e^-4	0.802	INTERGENIC
3R	26456129	3R_26456129_SNP [dm3] 3R_30630407_SNP [dm6]	C	T	1.425e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21895682	2L_21895682_SNP [dm3] 2L_21895682_SNP [dm6]	A	G	1.432e^-4	0.802	DOWNSTREAM CR43762 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	2094894	3L_2094894_SNP [dm3] 3L_2094894_SNP [dm6]	G	A	1.436e^-4	0.802	INTRON sls
X	14239235	X_14239235_SNP [dm3] X_14345202_SNP [dm6]	G	A	1.442e^-4	0.802	INTRON dpr8
2R	12655573	2R_12655573_SNP [dm3] 2R_16768068_SNP [dm6]	T	C	1.443e^-4	0.802	SYNONYMOUS_CODING CG5348 UTR_3_PRIME CG5348 INTRON unc-104
3R	17935417	3R_17935417_SNP [dm3] 3R_22109695_SNP [dm6]	T	C	1.451e^-4	0.802	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22980145	3R_22980145_SNP [dm3] 3R_27154423_SNP [dm6]	T	A	1.451e^-4	0.802	INTRON Men-b
3R	26353068	3R_26353068_SNP [dm3] 3R_30527346_SNP [dm6]	T	A	1.451e^-4	0.802	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	6456827	3L_6456827_SNP [dm3] 3L_6463727_SNP [dm6]	C	A	1.457e^-4	0.802	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
X	16223497	X_16223497_SNP [dm3] X_16329464_SNP [dm6]	A	G	1.460e^-4	0.802	DOWNSTREAM CalpC INTRON CG9919	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11640156	3L_11640156_SNP [dm3] 3L_11647056_SNP [dm6]	A	C	1.461e^-4	0.802	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2R	16461958	2R_16461958_SNP [dm3] 2R_20574453_SNP [dm6]	A	G	1.464e^-4	0.802	INTRON qsm
3L	5310368	3L_5310368_SNP [dm3] 3L_5317268_SNP [dm6]	A	G	1.465e^-4	0.802	UPSTREAM CR45741 INTERGENIC
2L	13831149	2L_13831149_SNP [dm3] 2L_13831149_SNP [dm6]	T	C	1.465e^-4	0.802	DOWNSTREAM CG33649 & 1 other INTRON Orc5
2R	10478885	2R_10478885_SNP [dm3] 2R_14591380_SNP [dm6]	G	A	1.477e^-4	0.802	UPSTREAM CG12869 INTRON CG12869	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1791573	3L_1791573_SNP [dm3] 3L_1791573_SNP [dm6]	C	T	1.482e^-4	0.802	NON_SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14714408	2L_14714408_SNP [dm3] 2L_14714408_SNP [dm6]	C	A	1.484e^-4	0.802	UTR_3_PRIME CG34165 DOWNSTREAM CG34165
2R	18027463	2R_18027463_DEL [dm3] 2R_22139958_DEL [dm6]	CGTAT	A	1.491e^-4	0.802	UTR_5_PRIME gom DOWNSTREAM CG11269 INTRON a
X	5343634	X_5343634_INS [dm3] X_5449601_INS [dm6]	T	TT	1.492e^-4	0.802	INTRON SPR
3L	18809111	3L_18809111_SNP [dm3] 3L_18816011_SNP [dm6]	A	T	1.495e^-4	0.802	INTRON CG14073
3L	1252442	3L_1252442_SNP [dm3] 3L_1252442_SNP [dm6]	T	G	1.496e^-4	0.802	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
2L	12043698	2L_12043698_SNP [dm3] 2L_12043698_SNP [dm6]	G	A	1.497e^-4	0.802	UTR_5_PRIME CG6785 UPSTREAM CG6785 INTRON CG6785	TF binding site BDTNP1_TFBS_dl
2R	8836210	2R_8836210_SNP [dm3] 2R_12948705_SNP [dm6]	A	C	1.505e^-4	0.804	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17941181	2R_17941181_SNP [dm3] 2R_22053676_SNP [dm6]	G	C	1.532e^-4	0.814	INTERGENIC
2L	1569415	2L_1569415_SNP [dm3] 2L_1569415_SNP [dm6]	A	G	1.536e^-4	0.814	INTRON haf
3R	8130118	3R_8130118_SNP [dm3] 3R_12304396_SNP [dm6]	T	G	1.540e^-4	0.814	INTERGENIC
2L	9943321	2L_9943321_SNP [dm3] 2L_9943321_SNP [dm6]	A	C	1.545e^-4	0.814	DOWNSTREAM CG4619 INTRON CG5853
3R	11674395	3R_11674395_SNP [dm3] 3R_15848673_SNP [dm6]	G	T	1.550e^-4	0.814	DOWNSTREAM CG4546 INTRON cv-d
3R	2629727	3R_2629727_INS [dm3] 3R_6804005_INS [dm6]	G	GGCAG	1.552e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	10921938	3L_10921938_SNP [dm3] 3L_10928838_SNP [dm6]	C	T	1.553e^-4	0.814	INTERGENIC
3L	10886085	3L_10886085_SNP [dm3] 3L_10892985_SNP [dm6]	T	G	1.558e^-4	0.814	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
X	14239182	X_14239182_SNP [dm3] X_14345149_SNP [dm6]	G	A	1.562e^-4	0.814	INTRON dpr8
X	4622625	X_4622625_SNP [dm3] X_4728592_SNP [dm6]	T	C	1.576e^-4	0.814	UTR_3_PRIME Proc-R
2L	8563945	2L_8563945_SNP [dm3] 2L_8563945_SNP [dm6]	C	A	1.582e^-4	0.814	UTR_5_PRIME Sema-1a
2L	9348516	2L_9348516_SNP [dm3] 2L_9348516_SNP [dm6]	T	G	1.586e^-4	0.814	DOWNSTREAM CR44802 INTERGENIC
3L	3848469	3L_3848469_SNP [dm3] 3L_3848469_SNP [dm6]	T	C	1.589e^-4	0.814	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	16483028	3L_16483028_DEL [dm3] 3L_16489928_DEL [dm6]	TCCCATTCTACGGTTATTGT...	T	1.591e^-4	0.814	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25947961	3R_25947961_SNP [dm3] 3R_30122239_SNP [dm6]	G	A	1.593e^-4	0.814	SYNONYMOUS_CODING CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3023509	3L_3023509_SNP [dm3] 3L_3023509_SNP [dm6]	T	A	1.596e^-4	0.814	DOWNSTREAM aly INTERGENIC
2L	14067044	2L_14067044_SNP [dm3] 2L_14067044_SNP [dm6]	A	T	1.601e^-4	0.814	INTRON nAChRalpha5
2R	16461959	2R_16461959_SNP [dm3] 2R_20574454_SNP [dm6]	C	A	1.601e^-4	0.814	INTRON qsm
3R	26455903	3R_26455903_SNP [dm3] 3R_30630181_SNP [dm6]	C	T	1.609e^-4	0.815	INTERGENIC
2L	14178886	2L_14178886_SNP [dm3] 2L_14178886_SNP [dm6]	T	A	1.613e^-4	0.815	INTRON CG43333
3R	19656810	3R_19656810_SNP [dm3] 3R_23831088_SNP [dm6]	A	G	1.619e^-4	0.816	INTRON CG34355
3R	11628438	3R_11628438_SNP [dm3] 3R_15802716_SNP [dm6]	C	T	1.626e^-4	0.817	NON_SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11640159	3L_11640159_SNP [dm3] 3L_11647059_SNP [dm6]	T	C	1.631e^-4	0.817	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3L	965005	3L_965005_SNP [dm3] 3L_965005_SNP [dm6]	T	C	1.636e^-4	0.817	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8500049	2R_8500049_SNP [dm3] 2R_12612544_SNP [dm6]	A	G	1.638e^-4	0.817	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	22984298	3R_22984298_SNP [dm3] 3R_27158576_SNP [dm6]	T	G	1.644e^-4	0.817	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo
3L	5944522	3L_5944522_SNP [dm3] 3L_5951422_SNP [dm6]	G	A	1.653e^-4	0.817	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11628460	3R_11628460_SNP [dm3] 3R_15802738_SNP [dm6]	A	G	1.656e^-4	0.817	SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22744204	3R_22744204_SNP [dm3] 3R_26918482_SNP [dm6]	A	G	1.663e^-4	0.817	INTRON sda
3L	16483057	3L_16483057_SNP [dm3] 3L_16489957_SNP [dm6]	G	A	1.664e^-4	0.817	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	16483171	3L_16483171_SNP [dm3] 3L_16490071_SNP [dm6]	G	A	1.664e^-4	0.817	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1250791	3L_1250791_SNP [dm3] 3L_1250791_SNP [dm6]	A	G	1.689e^-4	0.82	UTR_5_PRIME CG9129 DOWNSTREAM Sac1
3R	8384354	3R_8384354_SNP [dm3] 3R_12558632_SNP [dm6]	T	A	1.690e^-4	0.82	INTRON Octbeta2R
3R	22984953	3R_22984953_SNP [dm3] 3R_27159231_SNP [dm6]	A	C	1.691e^-4	0.82	INTRON grass	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8327996	2L_8327996_SNP [dm3] 2L_8327996_SNP [dm6]	C	A	1.696e^-4	0.82	INTRON CG14275
3L	16482801	3L_16482801_INS [dm3] 3L_16489701_INS [dm6]	G	GATTTGG	1.706e^-4	0.82	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	4364328	3L_4364328_SNP [dm3] 3L_4364328_SNP [dm6]	A	T	1.709e^-4	0.82	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4364330	3L_4364330_SNP [dm3] 3L_4364330_SNP [dm6]	C	T	1.709e^-4	0.82	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18826280	3L_18826280_SNP [dm3] 3L_18833180_SNP [dm6]	A	G	1.711e^-4	0.82	INTRON Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7803078	2R_7803078_SNP [dm3] 2R_11915573_SNP [dm6]	G	A	1.714e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13137172	3L_13137172_SNP [dm3] 3L_13144072_SNP [dm6]	T	C	1.717e^-4	0.82	INTERGENIC
3L	3668808	3L_3668808_SNP [dm3] 3L_3668808_SNP [dm6]	G	T	1.740e^-4	0.82	INTERGENIC
3L	11916475	3L_11916475_SNP [dm3] 3L_11923375_SNP [dm6]	T	A	1.745e^-4	0.82	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10194627	3R_10194627_SNP [dm3] 3R_14368905_SNP [dm6]	C	T	1.750e^-4	0.82	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2217978	2L_2217978_SNP [dm3] 2L_2217978_SNP [dm6]	C	T	1.763e^-4	0.82	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14172041	3R_14172041_SNP [dm3] 3R_18346319_SNP [dm6]	G	C	1.764e^-4	0.82	INTRON CG15803
3R	22952388	3R_22952388_SNP [dm3] 3R_27126666_SNP [dm6]	C	A	1.767e^-4	0.82	INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15860198	X_15860198_SNP [dm3] X_15966165_SNP [dm6]	G	C	1.771e^-4	0.82	UPSTREAM mir-927 INTRON mmd
3R	22979395	3R_22979395_SNP [dm3] 3R_27153673_SNP [dm6]	C	G	1.772e^-4	0.82	INTRON Men-b	TF binding site BDTNP1_TFBS_prd
3R	14285996	3R_14285996_SNP [dm3] 3R_18460274_SNP [dm6]	T	C	1.785e^-4	0.82	INTRON fru
2L	5064393	2L_5064393_SNP [dm3] 2L_5064393_SNP [dm6]	T	C	1.787e^-4	0.82	UTR_5_PRIME qtc UPSTREAM CR43820 INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12590950	3R_12590950_SNP [dm3] 3R_16765228_SNP [dm6]	G	A	1.793e^-4	0.82	UPSTREAM tre-2 DOWNSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12016091	2R_12016091_SNP [dm3] 2R_16128586_SNP [dm6]	A	G	1.799e^-4	0.82	INTRON spin
3R	22978013	3R_22978013_SNP [dm3] 3R_27152291_SNP [dm6]	T	C	1.801e^-4	0.82	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	1252307	3L_1252307_SNP [dm3] 3L_1252307_SNP [dm6]	T	C	1.802e^-4	0.82	SYNONYMOUS_CODING CG9130 START_GAINED CG9133 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
2R	11095693	2R_11095693_SNP [dm3] 2R_15208188_SNP [dm6]	A	T	1.813e^-4	0.82	NON_SYNONYMOUS_CODING Ir51b INTRON row
2L	1009256	2L_1009256_SNP [dm3] 2L_1009256_SNP [dm6]	A	G	1.820e^-4	0.82	UTR_3_PRIME IA-2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10920736	3L_10920736_SNP [dm3] 3L_10927636_SNP [dm6]	C	G	1.825e^-4	0.82	INTERGENIC
3L	10436873	3L_10436873_SNP [dm3] 3L_10443773_SNP [dm6]	C	T	1.826e^-4	0.82	INTERGENIC
2L	16011988	2L_16011988_SNP [dm3] 2L_16011988_SNP [dm6]	G	A	1.831e^-4	0.82	INTRON beat-Ic
2L	3233571	2L_3233571_SNP [dm3] 2L_3233571_SNP [dm6]	G	A	1.845e^-4	0.82	INTERGENIC
2L	3233573	2L_3233573_SNP [dm3] 2L_3233573_SNP [dm6]	C	A	1.845e^-4	0.82	INTERGENIC
3R	11896173	3R_11896173_SNP [dm3] 3R_16070451_SNP [dm6]	A	G	1.858e^-4	0.82	SYNONYMOUS_CODING Mhcl	TF binding site mE1_TFBS_cad
3L	10886120	3L_10886120_SNP [dm3] 3L_10893020_SNP [dm6]	C	A	1.858e^-4	0.82	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	3668886	3L_3668886_SNP [dm3] 3L_3668886_SNP [dm6]	T	C	1.859e^-4	0.82	INTERGENIC
2R	16227739	2R_16227739_SNP [dm3] 2R_20340234_SNP [dm6]	A	G	1.860e^-4	0.82	INTERGENIC
X	3222975	X_3222975_SNP [dm3] X_3328942_SNP [dm6]	A	G	1.863e^-4	0.82	UPSTREAM dnc INTRON CR44886 & 1 other
2L	12497197	2L_12497197_SNP [dm3] 2L_12497197_SNP [dm6]	A	C	1.872e^-4	0.82	STOP_GAINED t-cup INTRON bun
X	14239190	X_14239190_SNP [dm3] X_14345157_SNP [dm6]	G	T	1.881e^-4	0.82	INTRON dpr8
3L	14553468	3L_14553468_SNP [dm3] 3L_14560368_SNP [dm6]	G	T	1.888e^-4	0.82	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19322994	2L_19322994_SNP [dm3] 2L_19322994_SNP [dm6]	C	A	1.890e^-4	0.82	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13657908	3R_13657908_SNP [dm3] 3R_17832186_SNP [dm6]	C	T	1.896e^-4	0.82	INTRON tinc	TF binding site mE1_TFBS_inv
3R	18188486	3R_18188486_SNP [dm3] 3R_22362764_SNP [dm6]	C	T	1.897e^-4	0.82	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9178748	3L_9178748_SNP [dm3] 3L_9185648_SNP [dm6]	G	A	1.906e^-4	0.82	INTERGENIC
2L	10294129	2L_10294129_SNP [dm3] 2L_10294129_SNP [dm6]	A	T	1.911e^-4	0.82	INTRON Hand	regulatory region REDfly_CRMs
3L	9612137	3L_9612137_SNP [dm3] 3L_9619037_SNP [dm6]	G	C	1.913e^-4	0.82	INTRON LanB2	TF binding site mE1_TFBS_cad
3L	18574631	3L_18574631_SNP [dm3] 3L_18581531_SNP [dm6]	G	A	1.926e^-4	0.82	INTERGENIC
3R	13417578	3R_13417578_SNP [dm3] 3R_17591856_SNP [dm6]	T	A	1.926e^-4	0.82	INTERGENIC
3L	1073192	3L_1073192_SNP [dm3] 3L_1073192_SNP [dm6]	G	A	1.930e^-4	0.82	INTRON bab1
2L	9348551	2L_9348551_SNP [dm3] 2L_9348551_SNP [dm6]	G	A	1.930e^-4	0.82	UPSTREAM CG43350 DOWNSTREAM CR44802 INTERGENIC
X	18487696	X_18487696_SNP [dm3] X_18593663_SNP [dm6]	T	A	1.931e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11866988	3R_11866988_SNP [dm3] 3R_16041266_SNP [dm6]	A	G	1.934e^-4	0.82	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run transposable element FlyBase
3R	11040466	3R_11040466_SNP [dm3] 3R_15214744_SNP [dm6]	T	G	1.939e^-4	0.82	SYNONYMOUS_CODING CG4210 DOWNSTREAM SIDL
3L	8037371	3L_8037371_SNP [dm3] 3L_8044271_SNP [dm6]	A	G	1.944e^-4	0.82	INTRON nmo
3L	10711079	3L_10711079_SNP [dm3] 3L_10717979_SNP [dm6]	A	T	1.948e^-4	0.82	INTERGENIC
3L	9612225	3L_9612225_SNP [dm3] 3L_9619125_SNP [dm6]	C	T	1.950e^-4	0.82	INTRON LanB2	TF binding site mE1_TFBS_cad
3R	22984149	3R_22984149_SNP [dm3] 3R_27158427_SNP [dm6]	T	G	1.956e^-4	0.82	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9335096	2L_9335096_SNP [dm3] 2L_9335096_SNP [dm6]	T	G	1.957e^-4	0.82	INTRON Eaat1
3L	10923140	3L_10923140_SNP [dm3] 3L_10930040_SNP [dm6]	G	T	1.958e^-4	0.82	INTERGENIC
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	1.961e^-4	0.82	INTRON nwk
3R	22958978	3R_22958978_SNP [dm3] 3R_27133256_SNP [dm6]	G	A	1.971e^-4	0.82	INTRON CG6051
2L	9047052	2L_9047052_SNP [dm3] 2L_9047052_SNP [dm6]	T	G	1.995e^-4	0.82	INTERGENIC
3R	22983234	3R_22983234_SNP [dm3] 3R_27157512_SNP [dm6]	A	T	1.998e^-4	0.82	UTR_3_PRIME Men-b UPSTREAM grass	TF binding site mE1_TFBS_Trl
2L	10655690	2L_10655690_SNP [dm3] 2L_10655690_SNP [dm6]	T	A	2.007e^-4	0.82	INTERGENIC
3R	22953916	3R_22953916_SNP [dm3] 3R_27128194_SNP [dm6]	C	T	2.016e^-4	0.82	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11037971	2L_11037971_SNP [dm3] 2L_11037971_SNP [dm6]	A	G	2.024e^-4	0.82	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	10693248	3L_10693248_SNP [dm3] 3L_10700148_SNP [dm6]	T	A	2.032e^-4	0.82	INTERGENIC
2L	21976776	2L_21976776_INS [dm3] 2L_21976776_INS [dm6]	A	ATTTCAAGACCTCA...	2.034e^-4	0.82	INTERGENIC
2R	7320593	2R_7320593_DEL [dm3] 2R_11433088_DEL [dm6]	TTGTTGTCGT	T	2.037e^-4	0.82	EXON CR43771
2L	10047915	2L_10047915_DEL [dm3] 2L_10047915_DEL [dm6]	TCTCGGCCAGTT...	T	2.039e^-4	0.82	INTERGENIC
3R	22251650	3R_22251650_DEL [dm3] 3R_26425928_DEL [dm6]	CTGGATGCCTATCTTCATCA...	C	2.047e^-4	0.82	UPSTREAM CG6503 & 1 other INTRON CR31084
3L	11808401	3L_11808401_SNP [dm3] 3L_11815301_SNP [dm6]	A	G	2.048e^-4	0.82	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	3942350	2L_3942350_SNP [dm3] 2L_3942350_SNP [dm6]	T	C	2.055e^-4	0.82	INTRON fred
2R	7803071	2R_7803071_SNP [dm3] 2R_11915566_SNP [dm6]	G	C	2.056e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27118394	3R_27118394_SNP [dm3] 3R_31292672_SNP [dm6]	G	C	2.056e^-4	0.82	INTERGENIC
2R	4663944	2R_4663944_SNP [dm3] 2R_8776439_SNP [dm6]	G	A	2.062e^-4	0.82	INTERGENIC
3R	22954757	3R_22954757_SNP [dm3] 3R_27129035_SNP [dm6]	A	T	2.065e^-4	0.82	INTRON CG6051
3R	25782158	3R_25782158_SNP [dm3] 3R_29956436_SNP [dm6]	G	A	2.066e^-4	0.82	INTRON TkR99D
3R	27203448	3R_27203448_SNP [dm3] 3R_31377726_SNP [dm6]	G	A	2.068e^-4	0.82	INTERGENIC
X	5830143	X_5830143_SNP [dm3] X_5936110_SNP [dm6]	T	A	2.069e^-4	0.82	INTRON CG3726
2L	7216114	2L_7216114_SNP [dm3] 2L_7216114_SNP [dm6]	G	A	2.070e^-4	0.82	INTRON CG13784
3L	13054574	3L_13054574_SNP [dm3] 3L_13061474_SNP [dm6]	T	C	2.071e^-4	0.82	UPSTREAM CG34428 & 1 other INTERGENIC
3L	1254168	3L_1254168_SNP [dm3] 3L_1254168_SNP [dm6]	C	T	2.072e^-4	0.82	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo
3L	2094883	3L_2094883_SNP [dm3] 3L_2094883_SNP [dm6]	A	G	2.080e^-4	0.82	INTRON sls
3R	6546325	3R_6546325_SNP [dm3] 3R_10720603_SNP [dm6]	A	G	2.081e^-4	0.82	INTERGENIC
3R	12806258	3R_12806258_SNP [dm3] 3R_16980536_SNP [dm6]	T	G	2.082e^-4	0.82	INTRON Ahcy89E
3R	25680067	3R_25680067_SNP [dm3] 3R_29854345_SNP [dm6]	T	C	2.082e^-4	0.82	UTR_3_PRIME Cad99C DOWNSTREAM dgt1
2L	13126861	2L_13126861_SNP [dm3] 2L_13126861_SNP [dm6]	G	C	2.083e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8586891	2L_8586891_SNP [dm3] 2L_8586891_SNP [dm6]	G	C	2.086e^-4	0.82	INTRON Sema-1a
2R	8991643	2R_8991643_SNP [dm3] 2R_13104138_SNP [dm6]	A	C	2.088e^-4	0.82	UTR_5_PRIME CG44341
2L	6976977	2L_6976977_SNP [dm3] 2L_6976977_SNP [dm6]	C	T	2.094e^-4	0.82	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	12806155	3R_12806155_SNP [dm3] 3R_16980433_SNP [dm6]	A	T	2.097e^-4	0.82	INTRON Ahcy89E
3R	18529038	3R_18529038_SNP [dm3] 3R_22703316_SNP [dm6]	A	G	2.098e^-4	0.82	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21976892	2L_21976892_SNP [dm3] 2L_21976892_SNP [dm6]	C	G	2.107e^-4	0.82	INTERGENIC
3R	14836873	3R_14836873_SNP [dm3] 3R_19011151_SNP [dm6]	T	A	2.107e^-4	0.82	INTRON gukh	TF binding site mE1_TFBS_cad
2L	10030960	2L_10030960_SNP [dm3] 2L_10030960_SNP [dm6]	A	G	2.108e^-4	0.82	INTERGENIC
3R	12080007	3R_12080007_SNP [dm3] 3R_16254285_SNP [dm6]	G	A	2.110e^-4	0.82	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7367320	2R_7367320_SNP [dm3] 2R_11479815_SNP [dm6]	C	T	2.114e^-4	0.82	INTRON inv	TF binding site BDTNP1_TFBS_twi
2R	16376872	2R_16376872_SNP [dm3] 2R_20489367_SNP [dm6]	G	A	2.116e^-4	0.82	INTERGENIC
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	2.124e^-4	0.82	INTRON nwk
2L	1052022	2L_1052022_SNP [dm3] 2L_1052022_SNP [dm6]	G	T	2.129e^-4	0.82	UTR_3_PRIME S	TF binding site mE1_TFBS_cad
2R	17110619	2R_17110619_SNP [dm3] 2R_21223114_SNP [dm6]	C	T	2.143e^-4	0.82	SYNONYMOUS_CODING ASPP
3L	11916298	3L_11916298_SNP [dm3] 3L_11923198_SNP [dm6]	C	T	2.144e^-4	0.82	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5609310	3L_5609310_SNP [dm3] 3L_5616210_SNP [dm6]	G	A	2.165e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9463178	3L_9463178_SNP [dm3] 3L_9470078_SNP [dm6]	G	A	2.167e^-4	0.82	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13375992	3L_13375992_SNP [dm3] 3L_13382892_SNP [dm6]	G	C	2.168e^-4	0.82	NON_SYNONYMOUS_CODING ImpL1 INTRON ImpL1	TF binding site mE1_TFBS_cad
2R	9509957	2R_9509957_SNP [dm3] 2R_13622452_SNP [dm6]	G	A	2.170e^-4	0.82	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12420424	2L_12420424_SNP [dm3] 2L_12420424_SNP [dm6]	G	A	2.170e^-4	0.82	INTRON vir-1
2R	15290741	2R_15290741_SNP [dm3] 2R_19403236_SNP [dm6]	C	A	2.172e^-4	0.82	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3202997	X_3202997_SNP [dm3] X_3308964_SNP [dm6]	T	A	2.178e^-4	0.82	INTRON dnc
3L	9579341	3L_9579341_SNP [dm3] 3L_9586241_SNP [dm6]	A	T	2.179e^-4	0.82	INTRON CG42673
2L	10859425	2L_10859425_SNP [dm3] 2L_10859425_SNP [dm6]	A	G	2.180e^-4	0.82	SYNONYMOUS_CODING Stam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11813026	2L_11813026_SNP [dm3] 2L_11813026_SNP [dm6]	A	G	2.180e^-4	0.82	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	15128300	2R_15128300_SNP [dm3] 2R_19240795_SNP [dm6]	G	A	2.183e^-4	0.82	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8153863	3R_8153863_SNP [dm3] 3R_12328141_SNP [dm6]	C	G	2.193e^-4	0.82	DOWNSTREAM CR45584 INTERGENIC
2L	12420420	2L_12420420_SNP [dm3] 2L_12420420_SNP [dm6]	T	G	2.198e^-4	0.82	INTRON vir-1
3R	10826328	3R_10826328_SNP [dm3] 3R_15000606_SNP [dm6]	C	T	2.200e^-4	0.82	INTERGENIC
2R	4553206	2R_4553206_SNP [dm3] 2R_8665701_SNP [dm6]	C	T	2.208e^-4	0.82	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15002185	3R_15002185_SNP [dm3] 3R_19176463_SNP [dm6]	A	C	2.213e^-4	0.82	UPSTREAM CG14282 INTERGENIC
2R	18799063	2R_18799063_SNP [dm3] 2R_22911540_SNP [dm6]	C	T	2.216e^-4	0.82	SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	8153838	3R_8153838_SNP [dm3] 3R_12328116_SNP [dm6]	A	T	2.225e^-4	0.82	DOWNSTREAM CR45584 INTERGENIC
X	14239199	X_14239199_SNP [dm3] X_14345166_SNP [dm6]	A	G	2.227e^-4	0.82	INTRON dpr8
2L	21096807	2L_21096807_SNP [dm3] 2L_21096807_SNP [dm6]	T	C	2.227e^-4	0.82	UPSTREAM CG34136 INTRON CG12050	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1860641	3L_1860641_SNP [dm3] 3L_1860641_SNP [dm6]	G	T	2.232e^-4	0.82	UTR_3_PRIME R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18771449	3R_18771449_SNP [dm3] 3R_22945727_SNP [dm6]	C	T	2.235e^-4	0.82	INTRON klg	TF binding site mE1_TFBS_chinmo
X	17017156	X_17017156_SNP [dm3] X_17123123_SNP [dm6]	A	G	2.242e^-4	0.82	INTRON CG5004	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24823319	3R_24823319_SNP [dm3] 3R_28997597_SNP [dm6]	G	A	2.248e^-4	0.82	INTRON wat
2L	8771391	2L_8771391_SNP [dm3] 2L_8771391_SNP [dm6]	C	T	2.253e^-4	0.82	SYNONYMOUS_CODING CG9465
3L	11640915	3L_11640915_SNP [dm3] 3L_11647815_SNP [dm6]	A	G	2.264e^-4	0.82	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	25412726	3R_25412726_SNP [dm3] 3R_29587004_SNP [dm6]	C	T	2.285e^-4	0.82	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17818937	2L_17818937_SNP [dm3] 2L_17818937_SNP [dm6]	C	T	2.287e^-4	0.82	INTRON CadN2
2L	11037896	2L_11037896_SNP [dm3] 2L_11037896_SNP [dm6]	A	G	2.288e^-4	0.82	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17644807	2R_17644807_SNP [dm3] 2R_21757302_SNP [dm6]	G	T	2.291e^-4	0.82	UPSTREAM Grx-1 INTERGENIC
3R	22976786	3R_22976786_SNP [dm3] 3R_27151064_SNP [dm6]	T	C	2.297e^-4	0.82	UTR_5_PRIME CG6051 UPSTREAM Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10480129	2R_10480129_SNP [dm3] 2R_14592624_SNP [dm6]	C	A	2.303e^-4	0.82	UTR_5_PRIME CG12869	TF binding site mE1_TFBS_cad
3R	18188518	3R_18188518_SNP [dm3] 3R_22362796_SNP [dm6]	C	T	2.310e^-4	0.82	UTR_5_PRIME Muted & 1 other UPSTREAM CG7071 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	1592178	X_1592178_SNP [dm3] X_1698145_SNP [dm6]	A	T	2.312e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9114416	3L_9114416_SNP [dm3] 3L_9121316_SNP [dm6]	G	A	2.314e^-4	0.82	INTRON bol
2R	15135071	2R_15135071_SNP [dm3] 2R_19247566_SNP [dm6]	A	C	2.323e^-4	0.82	INTERGENIC
3L	20706355	3L_20706355_SNP [dm3] 3L_20713255_SNP [dm6]	A	G	2.323e^-4	0.82	UTR_3_PRIME cmpy UPSTREAM CG34260
3R	27203404	3R_27203404_SNP [dm3] 3R_31377682_SNP [dm6]	G	C	2.329e^-4	0.82	INTERGENIC
2R	8991685	2R_8991685_SNP [dm3] 2R_13104180_SNP [dm6]	A	G	2.333e^-4	0.82	NON_SYNONYMOUS_CODING CG44341
2L	13040860	2L_13040860_SNP [dm3] 2L_13040860_SNP [dm6]	G	A	2.337e^-4	0.82	INTRON CG9932
3R	25782026	3R_25782026_SNP [dm3] 3R_29956304_SNP [dm6]	T	C	2.337e^-4	0.82	INTRON TkR99D
3R	15397174	3R_15397174_SNP [dm3] 3R_19571452_SNP [dm6]	A	C	2.346e^-4	0.82	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	16852948	X_16852948_SNP [dm3] X_16958915_SNP [dm6]	C	T	2.351e^-4	0.82	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad
3R	5469839	3R_5469839_SNP [dm3] 3R_9644117_SNP [dm6]	G	A	2.358e^-4	0.82	DOWNSTREAM Fst INTRON Dh44	TF binding site BDTNP1_TFBS_twi
3L	11291831	3L_11291831_SNP [dm3] 3L_11298731_SNP [dm6]	C	T	2.361e^-4	0.82	INTERGENIC
3R	25364450	3R_25364450_SNP [dm3] 3R_29538728_SNP [dm6]	G	A	2.363e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8154288	3R_8154288_SNP [dm3] 3R_12328566_SNP [dm6]	T	A	2.375e^-4	0.82	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3L	3027602	3L_3027602_SNP [dm3] 3L_3027602_SNP [dm6]	G	A	2.377e^-4	0.82	INTERGENIC
2L	4001277	2L_4001277_SNP [dm3] 2L_4001277_SNP [dm6]	T	G	2.393e^-4	0.82	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	5180698	X_5180698_DEL [dm3] X_5286665_DEL [dm6]	TT	T	2.399e^-4	0.82	INTERGENIC
3L	16697854	3L_16697854_SNP [dm3] 3L_16704754_SNP [dm6]	G	T	2.400e^-4	0.82	UPSTREAM CG9692 INTRON Lasp & 1 other
X	6709966	X_6709966_INS [dm3] X_6815933_INS [dm6]	A	AATA	2.404e^-4	0.82	INTRON iav
2R	13448847	2R_13448847_SNP [dm3] 2R_17561342_SNP [dm6]	C	A	2.410e^-4	0.82	INTRON Klp54D
3L	9586762	3L_9586762_SNP [dm3] 3L_9593662_SNP [dm6]	A	G	2.410e^-4	0.82	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site mE1_TFBS_chinmo
3L	9586774	3L_9586774_SNP [dm3] 3L_9593674_SNP [dm6]	C	T	2.410e^-4	0.82	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site mE1_TFBS_chinmo
3L	11640921	3L_11640921_SNP [dm3] 3L_11647821_SNP [dm6]	G	A	2.412e^-4	0.82	SYNONYMOUS_CODING RIOK1 UPSTREAM CG7339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3558298	3L_3558298_SNP [dm3] 3L_3558298_SNP [dm6]	G	C	2.419e^-4	0.82	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	847554	2L_847554_SNP [dm3] 2L_847554_SNP [dm6]	T	G	2.419e^-4	0.82	INTRON drongo
X	16223462	X_16223462_SNP [dm3] X_16329429_SNP [dm6]	C	A	2.421e^-4	0.82	DOWNSTREAM CalpC INTRON CG9919	TF binding site mE1_TFBS_HSA
3R	26355137	3R_26355137_SNP [dm3] 3R_30529415_SNP [dm6]	G	T	2.421e^-4	0.82	UPSTREAM CR45553 DOWNSTREAM CR45552 INTRON CR45552	TF binding site mE1_TFBS_HSA
3R	26291193	3R_26291193_SNP [dm3] 3R_30465471_SNP [dm6]	C	T	2.423e^-4	0.82	SYNONYMOUS_CODING CDase UPSTREAM PH4alphaEFB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	16733887	3L_16733887_SNP [dm3] 3L_16740787_SNP [dm6]	G	A	2.425e^-4	0.82	INTERGENIC
3L	5944325	3L_5944325_SNP [dm3] 3L_5951225_SNP [dm6]	G	C	2.431e^-4	0.82	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	4552757	2R_4552757_SNP [dm3] 2R_8665252_SNP [dm6]	C	T	2.433e^-4	0.82	UPSTREAM Acsl DOWNSTREAM ptc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	17663124	X_17663124_SNP [dm3] X_17769091_SNP [dm6]	A	G	2.436e^-4	0.82	NON_SYNONYMOUS_CODING unc-4	TF binding site BDTNP1_TFBS_twi
3R	22964764	3R_22964764_SNP [dm3] 3R_27139042_SNP [dm6]	C	A	2.437e^-4	0.82	INTRON CG6051
3R	11628388	3R_11628388_SNP [dm3] 3R_15802666_SNP [dm6]	T	A	2.439e^-4	0.82	NON_SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16018961	2R_16018961_SNP [dm3] 2R_20131456_SNP [dm6]	T	C	2.447e^-4	0.82	INTERGENIC
2L	13801503	2L_13801503_SNP [dm3] 2L_13801503_SNP [dm6]	G	A	2.455e^-4	0.82	INTERGENIC
X	17014875	X_17014875_SNP [dm3] X_17120842_SNP [dm6]	C	T	2.458e^-4	0.82	INTRON CG5004
2L	4001079	2L_4001079_SNP [dm3] 2L_4001079_SNP [dm6]	A	G	2.463e^-4	0.82	UPSTREAM CR45344 DOWNSTREAM CG43797 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8383905	3R_8383905_SNP [dm3] 3R_12558183_SNP [dm6]	T	C	2.463e^-4	0.82	INTRON Octbeta2R
3L	10700130	3L_10700130_SNP [dm3] 3L_10707030_SNP [dm6]	A	G	2.463e^-4	0.82	INTERGENIC
2R	19368631	2R_19368631_SNP [dm3] 2R_23481108_SNP [dm6]	T	A	2.464e^-4	0.82	INTRON CG43795
3R	22951521	3R_22951521_SNP [dm3] 3R_27125799_SNP [dm6]	A	G	2.465e^-4	0.82	SYNONYMOUS_CODING CG6051	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	1087562	2L_1087562_SNP [dm3] 2L_1087562_SNP [dm6]	A	G	2.470e^-4	0.82	INTRON CG4629
2R	10627375	2R_10627375_SNP [dm3] 2R_14739870_SNP [dm6]	A	T	2.474e^-4	0.82	UTR_3_PRIME CG12858 UPSTREAM CR43428 DOWNSTREAM CG12858
3L	11808274	3L_11808274_SNP [dm3] 3L_11815174_SNP [dm6]	T	A	2.477e^-4	0.82	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2231983	3L_2231983_SNP [dm3] 3L_2231983_SNP [dm6]	A	G	2.478e^-4	0.82	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2815857	2L_2815857_SNP [dm3] 2L_2815857_SNP [dm6]	A	G	2.479e^-4	0.82	UPSTREAM CG15400 DOWNSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8852567	2R_8852567_INS [dm3] 2R_12965062_INS [dm6]	T	TT	2.483e^-4	0.82	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6693193	2L_6693193_SNP [dm3] 2L_6693193_SNP [dm6]	G	A	2.491e^-4	0.82	INTRON Tsp	TF binding site mE1_TFBS_chinmo
2R	18081705	2R_18081705_SNP [dm3] 2R_22194200_SNP [dm6]	G	T	2.497e^-4	0.82	INTRON Swim
2L	11017453	2L_11017453_SNP [dm3] 2L_11017453_SNP [dm6]	G	C	2.521e^-4	0.82	NON_SYNONYMOUS_CODING CG14913 DOWNSTREAM Acp32CD INTRON Samuel
2L	19323061	2L_19323061_SNP [dm3] 2L_19323061_SNP [dm6]	G	T	2.533e^-4	0.82	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	5032128	2L_5032128_SNP [dm3] 2L_5032128_SNP [dm6]	T	C	2.534e^-4	0.82	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14350039	3L_14350039_SNP [dm3] 3L_14356939_SNP [dm6]	A	C	2.536e^-4	0.82	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	19240245	3L_19240245_SNP [dm3] 3L_19247145_SNP [dm6]	G	A	2.546e^-4	0.82	INTERGENIC
3R	22984700	3R_22984700_SNP [dm3] 3R_27158978_SNP [dm6]	G	A	2.558e^-4	0.82	INTRON grass	TF binding site mE1_TFBS_cad
2L	2217987	2L_2217987_SNP [dm3] 2L_2217987_SNP [dm6]	C	T	2.563e^-4	0.82	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10654686	2L_10654686_SNP [dm3] 2L_10654686_SNP [dm6]	C	G	2.563e^-4	0.82	DOWNSTREAM CG17098 INTERGENIC
3L	13054578	3L_13054578_INS [dm3] 3L_13061478_INS [dm6]	T	TCCACT	2.567e^-4	0.82	UPSTREAM CG34428 & 1 other INTERGENIC
2L	3960961	2L_3960961_DEL [dm3] 2L_3960961_DEL [dm6]	AATACTTATA	A	2.571e^-4	0.82	INTRON fred
2R	19054006	2R_19054006_SNP [dm3] 2R_23166483_SNP [dm6]	C	G	2.578e^-4	0.82	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26354998	3R_26354998_SNP [dm3] 3R_30529276_SNP [dm6]	T	C	2.578e^-4	0.82	DOWNSTREAM CR45552 INTRON CR45552	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	13935195	2L_13935195_SNP [dm3] 2L_13935195_SNP [dm6]	A	C	2.591e^-4	0.82	UPSTREAM CG16885 INTRON Ance-3
2R	1622140	2R_1622140_SNP [dm3] 2R_5734635_SNP [dm6]	C	T	2.594e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	5038208	2L_5038208_SNP [dm3] 2L_5038208_SNP [dm6]	G	A	2.598e^-4	0.82	SYNONYMOUS_CODING CG14042 UTR_5_PRIME SP555 UPSTREAM SP555 DOWNSTREAM Cg25C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7316537	3L_7316537_SNP [dm3] 3L_7323437_SNP [dm6]	G	A	2.600e^-4	0.82	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	15962237	3R_15962237_SNP [dm3] 3R_20136515_SNP [dm6]	A	T	2.600e^-4	0.82	INTERGENIC
2L	6734952	2L_6734952_SNP [dm3] 2L_6734952_SNP [dm6]	G	C	2.611e^-4	0.82	SYNONYMOUS_CODING TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1252328	3L_1252328_SNP [dm3] 3L_1252328_SNP [dm6]	A	C	2.611e^-4	0.82	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
2L	8586954	2L_8586954_INS [dm3] 2L_8586954_INS [dm6]	C	CC	2.622e^-4	0.82	INTRON Sema-1a
3L	20705778	3L_20705778_SNP [dm3] 3L_20712678_SNP [dm6]	T	G	2.631e^-4	0.82	DOWNSTREAM cmpy INTERGENIC	transposable element FlyBase
3R	16626210	3R_16626210_SNP [dm3] 3R_20800488_SNP [dm6]	T	C	2.633e^-4	0.82	INTRON Syp
3L	13137153	3L_13137153_SNP [dm3] 3L_13144053_SNP [dm6]	A	T	2.636e^-4	0.82	INTERGENIC
3R	26179043	3R_26179043_SNP [dm3] 3R_30353321_SNP [dm6]	T	C	2.640e^-4	0.82	INTRON hdc
2R	12035410	2R_12035410_SNP [dm3] 2R_16147905_SNP [dm6]	C	T	2.647e^-4	0.82	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6337611	X_6337611_SNP [dm3] X_6443578_SNP [dm6]	T	C	2.654e^-4	0.82	INTRON CG42340
3L	10814263	3L_10814263_SNP [dm3] 3L_10821163_SNP [dm6]	C	A	2.659e^-4	0.82	INTERGENIC
3L	18574630	3L_18574630_SNP [dm3] 3L_18581530_SNP [dm6]	A	C	2.662e^-4	0.82	INTERGENIC
3R	11628325	3R_11628325_SNP [dm3] 3R_15802603_SNP [dm6]	T	G	2.666e^-4	0.82	SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1848249	3L_1848249_SNP [dm3] 3L_1848249_SNP [dm6]	T	C	2.669e^-4	0.82	INTERGENIC
X	14239234	X_14239234_SNP [dm3] X_14345201_SNP [dm6]	T	G	2.677e^-4	0.82	INTRON dpr8
3L	7024812	3L_7024812_INS [dm3] 3L_7031712_INS [dm6]	T	TAT	2.678e^-4	0.82	INTRON Mp
2L	1053266	2L_1053266_SNP [dm3] 2L_1053266_SNP [dm6]	T	G	2.679e^-4	0.82	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11896238	3R_11896238_SNP [dm3] 3R_16070516_SNP [dm6]	G	T	2.683e^-4	0.82	INTRON Mhcl	TF binding site mE1_TFBS_cad
3L	11009908	3L_11009908_SNP [dm3] 3L_11016808_SNP [dm6]	T	G	2.695e^-4	0.82	INTERGENIC
2L	11030751	2L_11030751_SNP [dm3] 2L_11030751_SNP [dm6]	T	G	2.696e^-4	0.82	SYNONYMOUS_CODING Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3920512	3L_3920512_SNP [dm3] 3L_3920512_SNP [dm6]	T	C	2.712e^-4	0.82	INTRON Eip63F-1
2R	8555733	2R_8555733_SNP [dm3] 2R_12668228_SNP [dm6]	G	C	2.714e^-4	0.82	INTRON nemy
3L	3029489	3L_3029489_SNP [dm3] 3L_3029489_SNP [dm6]	G	A	2.721e^-4	0.82	INTERGENIC
3L	12083564	3L_12083564_SNP [dm3] 3L_12090464_SNP [dm6]	C	T	2.726e^-4	0.82	INTERGENIC
3L	3489851	3L_3489851_SNP [dm3] 3L_3489851_SNP [dm6]	C	T	2.729e^-4	0.82	INTRON CG42324
3R	22000418	3R_22000418_SNP [dm3] 3R_26174696_SNP [dm6]	G	A	2.733e^-4	0.82	INTRON CG31323
3R	22764772	3R_22764772_SNP [dm3] 3R_26939050_SNP [dm6]	C	A	2.743e^-4	0.82	SYNONYMOUS_CODING sda
2R	10479379	2R_10479379_SNP [dm3] 2R_14591874_SNP [dm6]	G	A	2.748e^-4	0.82	UPSTREAM CG12869 INTRON CG12869	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	7316598	3L_7316598_SNP [dm3] 3L_7323498_SNP [dm6]	C	T	2.765e^-4	0.82	UPSTREAM Rint1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	11661924	3L_11661924_SNP [dm3] 3L_11668824_SNP [dm6]	A	C	2.770e^-4	0.82	INTRON CG32085
2R	4149452	2R_4149452_SNP [dm3] 2R_8261947_SNP [dm6]	G	A	2.784e^-4	0.82	UPSTREAM CG2291 DOWNSTREAM CG12126 INTERGENIC
2L	9374837	2L_9374837_SNP [dm3] 2L_9374837_SNP [dm6]	C	A	2.785e^-4	0.82	DOWNSTREAM CR43865 INTRON Shawl
2R	8558054	2R_8558054_INS [dm3] 2R_12670549_INS [dm6]	T	TAA	2.792e^-4	0.82	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	10451196	3R_10451196_SNP [dm3] 3R_14625474_SNP [dm6]	G	A	2.809e^-4	0.82	UTR_5_PRIME put UPSTREAM His4r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9020140	2R_9020140_SNP [dm3] 2R_13132635_SNP [dm6]	G	A	2.810e^-4	0.82	UPSTREAM Cap-G & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	16036541	3R_16036541_SNP [dm3] 3R_20210819_SNP [dm6]	C	A	2.813e^-4	0.82	INTRON Nlg4
2R	6753461	2R_6753461_SNP [dm3] 2R_10865956_SNP [dm6]	A	G	2.813e^-4	0.82	INTRON CG30015
3R	12806238	3R_12806238_SNP [dm3] 3R_16980516_SNP [dm6]	C	G	2.816e^-4	0.82	INTRON Ahcy89E
2L	8717663	2L_8717663_SNP [dm3] 2L_8717663_SNP [dm6]	A	G	2.826e^-4	0.82	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12592861	2L_12592861_SNP [dm3] 2L_12592861_SNP [dm6]	A	G	2.828e^-4	0.82	INTRON nub
2L	13975515	2L_13975515_SNP [dm3] 2L_13975515_SNP [dm6]	A	G	2.834e^-4	0.82	NON_SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8900580	3L_8900580_INS [dm3] 3L_8907480_INS [dm6]	T	TCATT	2.835e^-4	0.82	INTRON mfr
3R	18682782	3R_18682782_SNP [dm3] 3R_22857060_SNP [dm6]	T	C	2.839e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8051633	3R_8051633_SNP [dm3] 3R_12225911_SNP [dm6]	G	T	2.840e^-4	0.82	NON_SYNONYMOUS_CODING CG12256 UPSTREAM CG17404 EXON CR43477	TF binding site mE1_TFBS_sens
3R	15399561	3R_15399561_SNP [dm3] 3R_19573839_SNP [dm6]	G	A	2.845e^-4	0.82	INTRON Dys
3R	25770401	3R_25770401_SNP [dm3] 3R_29944679_SNP [dm6]	G	A	2.846e^-4	0.82	SYNONYMOUS_CODING CG15523
3R	19657251	3R_19657251_SNP [dm3] 3R_23831529_SNP [dm6]	C	G	2.850e^-4	0.82	INTRON CG34355
X	4747233	X_4747233_SNP [dm3] X_4853200_SNP [dm6]	T	C	2.861e^-4	0.82	INTRON CG42594	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4091686	3L_4091686_SNP [dm3] 3L_4091686_SNP [dm6]	A	G	2.867e^-4	0.82	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
3R	5428201	3R_5428201_SNP [dm3] 3R_9602479_SNP [dm6]	C	T	2.868e^-4	0.82	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8653418	2L_8653418_SNP [dm3] 2L_8653418_SNP [dm6]	T	A	2.876e^-4	0.82	INTRON Sema-1a
2R	11929665	2R_11929665_SNP [dm3] 2R_16042160_SNP [dm6]	G	C	2.877e^-4	0.82	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_chinmo
2R	8387471	2R_8387471_SNP [dm3] 2R_12499966_SNP [dm6]	T	A	2.882e^-4	0.82	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4001256	2L_4001256_DEL [dm3] 2L_4001256_DEL [dm6]	GATCCGGAAATTGGCTTGAG...	G	2.888e^-4	0.82	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9374839	2L_9374839_SNP [dm3] 2L_9374839_SNP [dm6]	G	A	2.888e^-4	0.82	DOWNSTREAM CR43865 INTRON Shawl
3R	11506774	3R_11506774_SNP [dm3] 3R_15681052_SNP [dm6]	G	A	2.903e^-4	0.82	INTRON pxb	TF binding site mE1_TFBS_sens
2L	16011992	2L_16011992_SNP [dm3] 2L_16011992_SNP [dm6]	A	T	2.907e^-4	0.82	INTRON beat-Ic
2L	11037877	2L_11037877_SNP [dm3] 2L_11037877_SNP [dm6]	A	T	2.909e^-4	0.82	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16546157	3L_16546157_SNP [dm3] 3L_16553057_SNP [dm6]	G	C	2.911e^-4	0.82	INTERGENIC
2L	16011990	2L_16011990_SNP [dm3] 2L_16011990_SNP [dm6]	A	G	2.921e^-4	0.82	INTRON beat-Ic
3R	13592141	3R_13592141_SNP [dm3] 3R_17766419_SNP [dm6]	C	G	2.927e^-4	0.82	INTERGENIC
3L	14553426	3L_14553426_SNP [dm3] 3L_14560326_SNP [dm6]	G	C	2.927e^-4	0.82	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3911936	3L_3911936_SNP [dm3] 3L_3911936_SNP [dm6]	T	C	2.928e^-4	0.82	INTRON Eip63F-1
3L	11640519	3L_11640519_SNP [dm3] 3L_11647419_SNP [dm6]	T	C	2.936e^-4	0.82	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
3L	10722989	3L_10722989_DEL [dm3] 3L_10729889_DEL [dm6]	TGATAAGTTTAAT...	T	2.943e^-4	0.82	INTERGENIC
3L	1255295	3L_1255295_SNP [dm3] 3L_1255295_SNP [dm6]	T	C	2.951e^-4	0.82	INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
2R	20108557	2R_20108557_SNP [dm3] 2R_24221034_SNP [dm6]	G	A	2.953e^-4	0.82	INTRON CG30419
2R	8851688	2R_8851688_SNP [dm3] 2R_12964183_SNP [dm6]	G	T	2.955e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10889438	2L_10889438_SNP [dm3] 2L_10889438_SNP [dm6]	C	G	2.963e^-4	0.82	UPSTREAM CG14071 INTERGENIC
3R	13417056	3R_13417056_SNP [dm3] 3R_17591334_SNP [dm6]	C	T	2.964e^-4	0.82	INTERGENIC
2R	8558269	2R_8558269_INS [dm3] 2R_12670764_INS [dm6]	A	ATGTA	2.966e^-4	0.82	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv
2L	13946126	2L_13946126_SNP [dm3] 2L_13946126_SNP [dm6]	A	C	2.968e^-4	0.82	INTRON Ance-3 & 1 other
3L	9741608	3L_9741608_SNP [dm3] 3L_9748508_SNP [dm6]	C	T	2.984e^-4	0.82	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8216931	3L_8216931_SNP [dm3] 3L_8223831_SNP [dm6]	G	A	2.989e^-4	0.82	DOWNSTREAM CG13678 INTERGENIC
2L	2060885	2L_2060885_SNP [dm3] 2L_2060885_SNP [dm6]	T	A	2.992e^-4	0.82	INTRON dpr3
2L	15399507	2L_15399507_SNP [dm3] 2L_15399507_SNP [dm6]	T	C	2.999e^-4	0.82	UPSTREAM CR45373 DOWNSTREAM CR44860 & 1 other INTERGENIC
2L	9933594	2L_9933594_SNP [dm3] 2L_9933594_SNP [dm6]	T	A	3.004e^-4	0.82	UPSTREAM Cpr30F INTERGENIC
2R	9509956	2R_9509956_SNP [dm3] 2R_13622451_SNP [dm6]	C	A	3.006e^-4	0.82	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13127705	3L_13127705_SNP [dm3] 3L_13134605_SNP [dm6]	A	G	3.014e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3960937	2L_3960937_SNP [dm3] 2L_3960937_SNP [dm6]	T	A	3.015e^-4	0.82	INTRON fred
3R	12580058	3R_12580058_SNP [dm3] 3R_16754336_SNP [dm6]	C	T	3.015e^-4	0.82	INTRON bxd	TF binding site mE1_TFBS_cad
X	2689597	X_2689597_SNP [dm3] X_2795564_SNP [dm6]	A	G	3.016e^-4	0.82	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3R	9192484	3R_9192484_SNP [dm3] 3R_13366762_SNP [dm6]	G	T	3.017e^-4	0.82	SPLICE_SITE_REGION poly UTR_5_PRIME poly UPSTREAM Dic1 INTRON Dic1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10711080	3L_10711080_SNP [dm3] 3L_10717980_SNP [dm6]	A	G	3.018e^-4	0.82	INTERGENIC
3R	19595934	3R_19595934_SNP [dm3] 3R_23770212_SNP [dm6]	G	A	3.019e^-4	0.82	SYNONYMOUS_CODING tst
3L	13874687	3L_13874687_SNP [dm3] 3L_13881587_SNP [dm6]	C	G	3.020e^-4	0.82	UPSTREAM CG13737 INTRON dysc & 1 other
3R	24633349	3R_24633349_SNP [dm3] 3R_28807627_SNP [dm6]	A	T	3.021e^-4	0.82	DOWNSTREAM wdn & 1 other INTERGENIC
3L	5646528	3L_5646528_SNP [dm3] 3L_5653428_SNP [dm6]	T	C	3.024e^-4	0.82	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4663947	2R_4663947_SNP [dm3] 2R_8776442_SNP [dm6]	G	A	3.032e^-4	0.82	INTERGENIC
2L	13881770	2L_13881770_SNP [dm3] 2L_13881770_SNP [dm6]	C	T	3.035e^-4	0.82	INTRON CenG1A
2L	8577690	2L_8577690_SNP [dm3] 2L_8577690_SNP [dm6]	C	A	3.054e^-4	0.82	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	13138108	3R_13138108_SNP [dm3] 3R_17312386_SNP [dm6]	C	T	3.061e^-4	0.82	INTERGENIC
3R	22744207	3R_22744207_SNP [dm3] 3R_26918485_SNP [dm6]	C	T	3.068e^-4	0.82	INTRON sda
3L	16733934	3L_16733934_SNP [dm3] 3L_16740834_SNP [dm6]	C	G	3.069e^-4	0.82	INTERGENIC
2R	17780009	2R_17780009_SNP [dm3] 2R_21892504_SNP [dm6]	A	G	3.075e^-4	0.82	INTRON Fili
3L	13917638	3L_13917638_SNP [dm3] 3L_13924538_SNP [dm6]	G	A	3.075e^-4	0.82	INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	8154272	3R_8154272_SNP [dm3] 3R_12328550_SNP [dm6]	T	A	3.087e^-4	0.82	UPSTREAM CR45583 DOWNSTREAM CR45584 INTERGENIC
3R	17935439	3R_17935439_DEL [dm3] 3R_22109717_DEL [dm6]	CGAAATTGCTGT...	C	3.093e^-4	0.82	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10921949	3L_10921949_SNP [dm3] 3L_10928849_SNP [dm6]	A	T	3.097e^-4	0.82	INTERGENIC
3R	5951807	3R_5951807_SNP [dm3] 3R_10126085_SNP [dm6]	A	G	3.097e^-4	0.82	UPSTREAM knk DOWNSTREAM tws INTERGENIC	TF binding site mE1_TFBS_Trl
X	16925518	X_16925518_SNP [dm3] X_17031485_SNP [dm6]	T	C	3.102e^-4	0.82	INTRON CG45002
3R	11012987	3R_11012987_SNP [dm3] 3R_15187265_SNP [dm6]	C	T	3.103e^-4	0.82	INTRON Gyc88E
2R	8557192	2R_8557192_SNP [dm3] 2R_12669687_SNP [dm6]	A	C	3.109e^-4	0.82	DOWNSTREAM CG42708 INTRON nemy
3L	3983540	3L_3983540_SNP [dm3] 3L_3983540_SNP [dm6]	A	T	3.114e^-4	0.82	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13640967	2R_13640967_SNP [dm3] 2R_17753462_SNP [dm6]	G	A	3.115e^-4	0.82	DOWNSTREAM CG6385 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7898598	2L_7898598_SNP [dm3] 2L_7898598_SNP [dm6]	A	C	3.121e^-4	0.82	INTRON Snoo
3R	25782028	3R_25782028_SNP [dm3] 3R_29956306_SNP [dm6]	T	G	3.124e^-4	0.82	INTRON TkR99D
3R	15012408	3R_15012408_SNP [dm3] 3R_19186686_SNP [dm6]	T	C	3.133e^-4	0.82	INTRON CG31475	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13676753	2R_13676753_SNP [dm3] 2R_17789248_SNP [dm6]	G	A	3.135e^-4	0.82	START_GAINED UbcD10 UTR_5_PRIME UbcD10 UPSTREAM CG5033 DOWNSTREAM aft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	20273412	3R_20273412_SNP [dm3] 3R_24447690_SNP [dm6]	C	T	3.135e^-4	0.82	INTRON nAChRalpha1
3L	4496606	3L_4496606_SNP [dm3] 3L_4496606_SNP [dm6]	C	G	3.137e^-4	0.82	DOWNSTREAM CG13721 INTERGENIC
3L	9612223	3L_9612223_SNP [dm3] 3L_9619123_SNP [dm6]	C	T	3.138e^-4	0.82	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	13975508	2L_13975508_SNP [dm3] 2L_13975508_SNP [dm6]	T	G	3.140e^-4	0.82	SYNONYMOUS_CODING NimC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11406436	3L_11406436_SNP [dm3] 3L_11413336_SNP [dm6]	G	A	3.143e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11406437	3L_11406437_SNP [dm3] 3L_11413337_SNP [dm6]	C	T	3.143e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9652635	3L_9652635_SNP [dm3] 3L_9659535_SNP [dm6]	A	T	3.152e^-4	0.82	DOWNSTREAM CG33696 INTRON fry
3R	21509567	3R_21509567_SNP [dm3] 3R_25683845_SNP [dm6]	C	G	3.158e^-4	0.82	UTR_3_PRIME RpL27 DOWNSTREAM CG5028 & 1 other
3L	5400374	3L_5400374_SNP [dm3] 3L_5407274_SNP [dm6]	C	G	3.172e^-4	0.82	INTERGENIC
3L	3891015	3L_3891015_DEL [dm3] 3L_3891015_DEL [dm6]	ACATTTTAAGTTAATTGAAA...	A	3.190e^-4	0.82	DOWNSTREAM CR45422 INTERGENIC
2R	19053988	2R_19053988_SNP [dm3] 2R_23166465_SNP [dm6]	G	A	3.195e^-4	0.82	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12561978	3R_12561978_SNP [dm3] 3R_16736256_SNP [dm6]	A	G	3.200e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3R	12939382	3R_12939382_SNP [dm3] 3R_17113660_SNP [dm6]	C	T	3.201e^-4	0.82	INTRON cher
3L	3489848	3L_3489848_SNP [dm3] 3L_3489848_SNP [dm6]	T	A	3.203e^-4	0.82	INTRON CG42324
3R	22978624	3R_22978624_SNP [dm3] 3R_27152902_SNP [dm6]	T	G	3.204e^-4	0.82	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4090499	3L_4090499_SNP [dm3] 3L_4090499_SNP [dm6]	A	G	3.204e^-4	0.82	SYNONYMOUS_CODING CG14989	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8051664	3R_8051664_SNP [dm3] 3R_12225942_SNP [dm6]	G	A	3.204e^-4	0.82	SYNONYMOUS_CODING CG12256 UPSTREAM CG17404 EXON CR43477	TF binding site mE1_TFBS_sens
3R	3165975	3R_3165975_SNP [dm3] 3R_7340253_SNP [dm6]	A	G	3.209e^-4	0.82	INTERGENIC
3R	22984269	3R_22984269_SNP [dm3] 3R_27158547_SNP [dm6]	T	C	3.210e^-4	0.82	DOWNSTREAM Men-b INTRON grass	TF binding site mE1_TFBS_chinmo
3L	9612208	3L_9612208_SNP [dm3] 3L_9619108_SNP [dm6]	T	C	3.217e^-4	0.82	INTRON LanB2	TF binding site mE1_TFBS_cad
2L	1260702	2L_1260702_SNP [dm3] 2L_1260702_SNP [dm6]	G	A	3.223e^-4	0.82	INTRON robo3
2L	16428907	2L_16428907_SNP [dm3] 2L_16428907_SNP [dm6]	C	T	3.226e^-4	0.82	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13935105	2L_13935105_SNP [dm3] 2L_13935105_SNP [dm6]	G	T	3.255e^-4	0.82	UPSTREAM CG16885 INTRON Ance-3
2R	13794484	2R_13794484_SNP [dm3] 2R_17906979_SNP [dm6]	A	G	3.262e^-4	0.82	INTRON Elk
3R	13815746	3R_13815746_SNP [dm3] 3R_17990024_SNP [dm6]	T	A	3.262e^-4	0.82	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5638838	2L_5638838_SNP [dm3] 2L_5638838_SNP [dm6]	C	A	3.266e^-4	0.82	INTRON CG31646
3R	10484950	3R_10484950_SNP [dm3] 3R_14659228_SNP [dm6]	T	A	3.272e^-4	0.82	UTR_3_PRIME CG3505 UPSTREAM Hexim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7864787	2R_7864787_SNP [dm3] 2R_11977282_SNP [dm6]	A	G	3.277e^-4	0.82	UTR_3_PRIME CG8290 DOWNSTREAM CG30036
2L	5501499	2L_5501499_SNP [dm3] 2L_5501499_SNP [dm6]	G	A	3.290e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12871345	2R_12871345_SNP [dm3] 2R_16983840_SNP [dm6]	A	G	3.297e^-4	0.82	INTRON Cbp53E
2L	7884931	2L_7884931_SNP [dm3] 2L_7884931_SNP [dm6]	C	G	3.298e^-4	0.82	UTR_3_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7885013	2L_7885013_SNP [dm3] 2L_7885013_SNP [dm6]	T	C	3.298e^-4	0.82	UTR_3_PRIME SmE UPSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8558278	2R_8558278_INS [dm3] 2R_12670773_INS [dm6]	C	CC	3.307e^-4	0.82	UTR_3_PRIME CG42708 UPSTREAM nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	13454745	3R_13454745_SNP [dm3] 3R_17629023_SNP [dm6]	A	C	3.308e^-4	0.82	DOWNSTREAM tRNA:V4:90C & 1 other INTERGENIC
3R	10482685	3R_10482685_SNP [dm3] 3R_14656963_SNP [dm6]	G	A	3.311e^-4	0.82	UPSTREAM CG3505 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	18726718	3R_18726718_SNP [dm3] 3R_22900996_SNP [dm6]	G	A	3.322e^-4	0.82	INTRON klg
2R	7367484	2R_7367484_SNP [dm3] 2R_11479979_SNP [dm6]	A	C	3.325e^-4	0.82	INTRON inv
3R	11968808	3R_11968808_SNP [dm3] 3R_16143086_SNP [dm6]	A	G	3.326e^-4	0.82	NON_SYNONYMOUS_CODING Sb
2L	13867915	2L_13867915_SNP [dm3] 2L_13867915_SNP [dm6]	C	A	3.326e^-4	0.82	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15393509	3R_15393509_SNP [dm3] 3R_19567787_SNP [dm6]	A	G	3.332e^-4	0.82	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11813086	2L_11813086_SNP [dm3] 2L_11813086_SNP [dm6]	G	A	3.335e^-4	0.82	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8500007	2R_8500007_SNP [dm3] 2R_12612502_SNP [dm6]	C	T	3.337e^-4	0.82	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	18942909	2R_18942909_SNP [dm3] 2R_23055386_SNP [dm6]	G	A	3.340e^-4	0.82	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4079792	2L_4079792_SNP [dm3] 2L_4079792_SNP [dm6]	T	A	3.349e^-4	0.82	INTRON ed
3R	15154067	3R_15154067_SNP [dm3] 3R_19328345_SNP [dm6]	G	T	3.360e^-4	0.82	UPSTREAM CR44175 INTERGENIC
3R	11967545	3R_11967545_SNP [dm3] 3R_16141823_SNP [dm6]	C	A	3.360e^-4	0.82	SYNONYMOUS_CODING Sb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	3.363e^-4	0.82	INTRON beat-VI
3R	12592910	3R_12592910_SNP [dm3] 3R_16767188_SNP [dm6]	T	C	3.371e^-4	0.82	UPSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	22238376	3R_22238376_SNP [dm3] 3R_26412654_SNP [dm6]	G	A	3.387e^-4	0.82	INTERGENIC
3R	22949660	3R_22949660_SNP [dm3] 3R_27123938_SNP [dm6]	C	T	3.390e^-4	0.82	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12588280	3R_12588280_SNP [dm3] 3R_16762558_SNP [dm6]	A	G	3.395e^-4	0.82	DOWNSTREAM tre-3 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	5174861	3L_5174861_SNP [dm3] 3L_5181761_SNP [dm6]	C	T	3.400e^-4	0.82	INTRON shep
2L	665572	2L_665572_SNP [dm3] 2L_665572_SNP [dm6]	C	T	3.413e^-4	0.82	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3941299	2L_3941299_SNP [dm3] 2L_3941299_SNP [dm6]	G	T	3.414e^-4	0.82	INTRON fred
X	3187422	X_3187422_SNP [dm3] X_3293389_SNP [dm6]	C	A	3.420e^-4	0.82	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2R	14208398	2R_14208398_DEL [dm3] 2R_18320893_DEL [dm6]	ATTTATCAA	G	3.430e^-4	0.82	INTRON sbb
2R	9727838	2R_9727838_SNP [dm3] 2R_13840333_SNP [dm6]	G	T	3.432e^-4	0.82	DOWNSTREAM CG6347 INTRON CG6357	TF binding site mE1_TFBS_Trl
2R	7820335	2R_7820335_SNP [dm3] 2R_11932830_SNP [dm6]	G	A	3.438e^-4	0.82	INTERGENIC
3L	11808270	3L_11808270_SNP [dm3] 3L_11815170_SNP [dm6]	C	T	3.438e^-4	0.82	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4093111	3L_4093111_SNP [dm3] 3L_4093111_SNP [dm6]	T	C	3.453e^-4	0.82	UPSTREAM CG14990 DOWNSTREAM CG14989 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
3R	8866995	3R_8866995_SNP [dm3] 3R_13041273_SNP [dm6]	T	C	3.453e^-4	0.82	SYNONYMOUS_CODING snk UPSTREAM CG11670	TF binding site mE1_TFBS_chinmo
3R	11628340	3R_11628340_SNP [dm3] 3R_15802618_SNP [dm6]	A	C	3.454e^-4	0.82	SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12191277	X_12191277_DEL [dm3] X_12297244_DEL [dm6]	TT	T	3.455e^-4	0.82	INTRON Ten-a
3R	16543730	3R_16543730_SNP [dm3] 3R_20718008_SNP [dm6]	A	T	3.458e^-4	0.82	INTERGENIC
2R	14208408	2R_14208408_SNP [dm3] 2R_18320903_SNP [dm6]	A	C	3.461e^-4	0.82	INTRON sbb
2L	21971542	2L_21971542_SNP [dm3] 2L_21971542_SNP [dm6]	C	T	3.462e^-4	0.82	INTERGENIC
3R	26549101	3R_26549101_SNP [dm3] 3R_30723379_SNP [dm6]	G	A	3.466e^-4	0.82	INTERGENIC
2L	5501510	2L_5501510_SNP [dm3] 2L_5501510_SNP [dm6]	A	T	3.479e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16483007	3L_16483007_SNP [dm3] 3L_16489907_SNP [dm6]	A	T	3.480e^-4	0.82	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	16483009	3L_16483009_SNP [dm3] 3L_16489909_SNP [dm6]	T	C	3.480e^-4	0.82	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	16483011	3L_16483011_SNP [dm3] 3L_16489911_SNP [dm6]	A	G	3.480e^-4	0.82	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	16639728	3R_16639728_SNP [dm3] 3R_20814006_SNP [dm6]	C	T	3.483e^-4	0.82	SYNONYMOUS_CODING Fancd2
3L	10247017	3L_10247017_SNP [dm3] 3L_10253917_SNP [dm6]	T	A	3.487e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3421324	2R_3421324_SNP [dm3] 2R_7533819_SNP [dm6]	G	A	3.495e^-4	0.82	UPSTREAM Drat & 1 other INTRON Cyt-b5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	14936529	2R_14936529_SNP [dm3] 2R_19049024_SNP [dm6]	T	A	3.499e^-4	0.82	INTERGENIC
2L	9936232	2L_9936232_SNP [dm3] 2L_9936232_SNP [dm6]	C	A	3.500e^-4	0.82	UTR_3_PRIME CG31712 UPSTREAM CR45007 INTRON CG31712
2L	20293828	2L_20293828_INS [dm3] 2L_20293828_INS [dm6]	A	ATG	3.501e^-4	0.82	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5501535	2L_5501535_SNP [dm3] 2L_5501535_SNP [dm6]	C	T	3.509e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6976337	2L_6976337_SNP [dm3] 2L_6976337_SNP [dm6]	A	C	3.519e^-4	0.82	INTRON uif	TF binding site mE1_TFBS_cad
3R	15397080	3R_15397080_SNP [dm3] 3R_19571358_SNP [dm6]	T	G	3.521e^-4	0.82	INTRON Dys	TF binding site BDTNP1_TFBS_z
2R	3060344	2R_3060344_SNP [dm3] 2R_7172839_SNP [dm6]	C	A	3.522e^-4	0.82	SYNONYMOUS_CODING pk INTRON pk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19144012	3L_19144012_SNP [dm3] 3L_19150912_SNP [dm6]	G	C	3.528e^-4	0.82	INTRON fz2
X	7318127	X_7318127_SNP [dm3] X_7424094_SNP [dm6]	A	C	3.537e^-4	0.82	DOWNSTREAM CG15036 INTERGENIC
3L	10921952	3L_10921952_DEL [dm3] 3L_10928852_DEL [dm6]	CATATTGTTGG...	A	3.539e^-4	0.82	INTERGENIC
X	19878827	X_19878827_DEL [dm3] X_19984794_DEL [dm6]	ACTTCCGCTTGTCCTTCTA...	T	3.543e^-4	0.82	INTERGENIC
2L	10681786	2L_10681786_INS [dm3] 2L_10681786_INS [dm6]	A	AGTA	3.545e^-4	0.82	UPSTREAM CG17107 DOWNSTREAM CG17105 INTERGENIC
3R	9292227	3R_9292227_SNP [dm3] 3R_13466505_SNP [dm6]	G	A	3.545e^-4	0.82	UPSTREAM CR17025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16543680	3R_16543680_SNP [dm3] 3R_20717958_SNP [dm6]	A	T	3.546e^-4	0.82	INTERGENIC
2L	6300396	2L_6300396_SNP [dm3] 2L_6300396_SNP [dm6]	C	T	3.549e^-4	0.82	INTRON Ddr
2L	8757087	2L_8757087_DEL [dm3] 2L_8757087_DEL [dm6]	TT	T	3.552e^-4	0.82	INTERGENIC
3L	17936486	3L_17936486_SNP [dm3] 3L_17943386_SNP [dm6]	A	C	3.559e^-4	0.82	INTRON CG43174
2L	11037880	2L_11037880_SNP [dm3] 2L_11037880_SNP [dm6]	G	C	3.564e^-4	0.82	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037883	2L_11037883_SNP [dm3] 2L_11037883_SNP [dm6]	A	G	3.564e^-4	0.82	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13831165	2L_13831165_SNP [dm3] 2L_13831165_SNP [dm6]	T	A	3.569e^-4	0.82	DOWNSTREAM CG33649 & 1 other INTRON Orc5
3L	2265934	3L_2265934_SNP [dm3] 3L_2265934_SNP [dm6]	G	A	3.579e^-4	0.82	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10232535	3L_10232535_SNP [dm3] 3L_10239435_SNP [dm6]	G	A	3.590e^-4	0.82	UPSTREAM CR45403 INTERGENIC
2L	21976904	2L_21976904_DEL [dm3] 2L_21976904_DEL [dm6]	GATAG	G	3.592e^-4	0.82	INTERGENIC
3R	13815915	3R_13815915_SNP [dm3] 3R_17990193_SNP [dm6]	T	A	3.592e^-4	0.82	INTRON cpo	TF binding site mE1_TFBS_inv
3R	16543688	3R_16543688_SNP [dm3] 3R_20717966_SNP [dm6]	C	G	3.594e^-4	0.82	INTERGENIC
2L	8550536	2L_8550536_SNP [dm3] 2L_8550536_SNP [dm6]	A	T	3.601e^-4	0.82	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3L	9464017	3L_9464017_SNP [dm3] 3L_9470917_SNP [dm6]	G	C	3.606e^-4	0.82	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
3L	4629188	3L_4629188_SNP [dm3] 3L_4629188_SNP [dm6]	T	C	3.611e^-4	0.82	UTR_3_PRIME Rpd3 DOWNSTREAM axo
3R	14468698	3R_14468698_SNP [dm3] 3R_18642976_SNP [dm6]	C	T	3.618e^-4	0.82	INTRON qin
3L	12442541	3L_12442541_SNP [dm3] 3L_12449441_SNP [dm6]	G	T	3.620e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11693202	2L_11693202_SNP [dm3] 2L_11693202_SNP [dm6]	T	C	3.627e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3562210	3L_3562210_SNP [dm3] 3L_3562210_SNP [dm6]	G	A	3.627e^-4	0.82	INTRON Eip63E
2L	4335683	2L_4335683_SNP [dm3] 2L_4335683_SNP [dm6]	A	T	3.627e^-4	0.82	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	14553417	3L_14553417_SNP [dm3] 3L_14560317_SNP [dm6]	G	A	3.628e^-4	0.82	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	14623876	3R_14623876_SNP [dm3] 3R_18798154_SNP [dm6]	A	G	3.630e^-4	0.82	INTERGENIC
2R	9017323	2R_9017323_SNP [dm3] 2R_13129818_SNP [dm6]	T	G	3.635e^-4	0.82	SYNONYMOUS_CODING CG13326 UPSTREAM CG3955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9021319	2R_9021319_SNP [dm3] 2R_13133814_SNP [dm6]	T	C	3.635e^-4	0.82	SPLICE_SITE_REGION Cap-G INTRON Cap-G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	9022146	2R_9022146_SNP [dm3] 2R_13134641_SNP [dm6]	G	T	3.635e^-4	0.82	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9022766	2R_9022766_SNP [dm3] 2R_13135261_SNP [dm6]	G	A	3.635e^-4	0.82	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
2R	9024003	2R_9024003_SNP [dm3] 2R_13136498_SNP [dm6]	A	G	3.635e^-4	0.82	NON_SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3R	24494730	3R_24494730_SNP [dm3] 3R_28669008_SNP [dm6]	C	A	3.636e^-4	0.82	UPSTREAM CG33346 INTERGENIC
X	13618840	X_13618840_SNP [dm3] X_13724807_SNP [dm6]	A	G	3.639e^-4	0.82	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8032626	3R_8032626_SNP [dm3] 3R_12206904_SNP [dm6]	A	C	3.644e^-4	0.82	DOWNSTREAM tRNA:CR31356 INTERGENIC
2L	415803	2L_415803_SNP [dm3] 2L_415803_SNP [dm6]	A	T	3.646e^-4	0.82	NON_SYNONYMOUS_CODING ebi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	15154248	3R_15154248_SNP [dm3] 3R_19328526_SNP [dm6]	C	A	3.653e^-4	0.82	UPSTREAM CR44175 INTERGENIC
2R	4130056	2R_4130056_SNP [dm3] 2R_8242551_SNP [dm6]	A	T	3.653e^-4	0.82	UPSTREAM CR44276 EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11808271	3L_11808271_SNP [dm3] 3L_11815171_SNP [dm6]	C	T	3.666e^-4	0.82	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26655284	3R_26655284_SNP [dm3] 3R_30829562_SNP [dm6]	C	T	3.674e^-4	0.82	INTRON CG15544
2R	4142908	2R_4142908_SNP [dm3] 2R_8255403_SNP [dm6]	A	C	3.681e^-4	0.82	NON_SYNONYMOUS_CODING CG14760
3R	22744224	3R_22744224_SNP [dm3] 3R_26918502_SNP [dm6]	G	A	3.688e^-4	0.82	INTRON sda
3L	3664208	3L_3664208_SNP [dm3] 3L_3664208_SNP [dm6]	A	G	3.697e^-4	0.82	INTERGENIC
3R	3337597	3R_3337597_SNP [dm3] 3R_7511875_SNP [dm6]	T	A	3.701e^-4	0.82	INTRON alpha-Est8
X	2695636	X_2695636_SNP [dm3] X_2801603_SNP [dm6]	C	T	3.706e^-4	0.82	INTRON kirre
2R	7803774	2R_7803774_DEL [dm3] 2R_11916269_DEL [dm6]	GTGAG	G	3.707e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
X	3187420	X_3187420_SNP [dm3] X_3293387_SNP [dm6]	C	T	3.710e^-4	0.82	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2L	21976768	2L_21976768_INS [dm3] 2L_21976768_INS [dm6]	A	GTATGTAC	3.713e^-4	0.82	INTERGENIC
2L	16061608	2L_16061608_SNP [dm3] 2L_16061608_SNP [dm6]	C	T	3.714e^-4	0.82	INTRON beat-Ia
3L	11739118	3L_11739118_SNP [dm3] 3L_11746018_SNP [dm6]	T	C	3.717e^-4	0.82	INTRON CG6024
2L	11037893	2L_11037893_SNP [dm3] 2L_11037893_SNP [dm6]	G	A	3.717e^-4	0.82	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	20046068	3L_20046068_SNP [dm3] 3L_20052968_SNP [dm6]	A	C	3.718e^-4	0.82	INTERGENIC
X	1581707	X_1581707_SNP [dm3] X_1687674_SNP [dm6]	T	C	3.722e^-4	0.82	INTRON CG32809 & 1 other	TF binding site mE1_TFBS_chinmo
2R	8836309	2R_8836309_SNP [dm3] 2R_12948804_SNP [dm6]	G	A	3.723e^-4	0.82	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10602384	2R_10602384_DEL [dm3] 2R_14714879_DEL [dm6]	CACC	C	3.726e^-4	0.82	INTERGENIC
3L	15995416	3L_15995416_SNP [dm3] 3L_16002316_SNP [dm6]	C	T	3.731e^-4	0.82	INTRON CG5830	TF binding site BDTNP1_TFBS_hb
2L	3091919	2L_3091919_SNP [dm3] 2L_3091919_SNP [dm6]	A	G	3.741e^-4	0.82	INTRON toc
2L	10028615	2L_10028615_SNP [dm3] 2L_10028615_SNP [dm6]	G	A	3.741e^-4	0.82	SYNONYMOUS_CODING CG13127
3L	2810094	3L_2810094_SNP [dm3] 3L_2810094_SNP [dm6]	T	C	3.743e^-4	0.82	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9658950	2R_9658950_SNP [dm3] 2R_13771445_SNP [dm6]	C	T	3.754e^-4	0.82	INTRON Cpr50Ca
2L	14246302	2L_14246302_SNP [dm3] 2L_14246302_SNP [dm6]	A	T	3.756e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1251116	3L_1251116_SNP [dm3] 3L_1251116_SNP [dm6]	A	T	3.759e^-4	0.82	NON_SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	10813480	2L_10813480_SNP [dm3] 2L_10813480_SNP [dm6]	T	C	3.762e^-4	0.82	INTRON Nos
2L	8653407	2L_8653407_SNP [dm3] 2L_8653407_SNP [dm6]	A	G	3.782e^-4	0.82	INTRON Sema-1a
2L	6300454	2L_6300454_DEL [dm3] 2L_6300454_DEL [dm6]	TGAGCCCAATT...	T	3.791e^-4	0.82	INTRON Ddr
2R	11573157	2R_11573157_SNP [dm3] 2R_15685652_SNP [dm6]	A	G	3.796e^-4	0.82	NON_SYNONYMOUS_CODING CG30082 UPSTREAM CR43429 INTRON Ranbp11
3L	5679595	3L_5679595_DEL [dm3] 3L_5686495_DEL [dm6]	TGC	T	3.797e^-4	0.82	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	9031447	2R_9031447_SNP [dm3] 2R_13143942_SNP [dm6]	C	T	3.802e^-4	0.82	SYNONYMOUS_CODING Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	3.803e^-4	0.82	INTERGENIC
3L	16066183	3L_16066183_SNP [dm3] 3L_16073083_SNP [dm6]	T	G	3.808e^-4	0.82	UPSTREAM Mbs INTRON Mbs
2L	1964091	2L_1964091_SNP [dm3] 2L_1964091_SNP [dm6]	T	C	3.809e^-4	0.82	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	10285988	3L_10285988_SNP [dm3] 3L_10292888_SNP [dm6]	T	C	3.809e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4335680	2L_4335680_SNP [dm3] 2L_4335680_SNP [dm6]	C	A	3.810e^-4	0.82	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	12295572	X_12295572_SNP [dm3] X_12401539_SNP [dm6]	T	C	3.813e^-4	0.82	INTERGENIC
2R	19009893	2R_19009893_SNP [dm3] 2R_23122370_SNP [dm6]	G	A	3.815e^-4	0.82	INTERGENIC
3L	10922037	3L_10922037_SNP [dm3] 3L_10928937_SNP [dm6]	T	G	3.816e^-4	0.82	INTERGENIC
3L	3558299	3L_3558299_SNP [dm3] 3L_3558299_SNP [dm6]	G	T	3.818e^-4	0.82	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18800866	3L_18800866_SNP [dm3] 3L_18807766_SNP [dm6]	T	C	3.819e^-4	0.82	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3232364	2L_3232364_INS [dm3] 2L_3232364_INS [dm6]	A	AT	3.824e^-4	0.82	INTERGENIC
2R	2980136	2R_2980136_SNP [dm3] 2R_7092631_SNP [dm6]	A	C	3.827e^-4	0.82	INTRON esn
2R	9020398	2R_9020398_SNP [dm3] 2R_13132893_SNP [dm6]	A	T	3.828e^-4	0.82	UPSTREAM Cap-G & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	9630468	2R_9630468_SNP [dm3] 2R_13742963_SNP [dm6]	T	A	3.829e^-4	0.82	INTRON fas
2R	14679290	2R_14679290_SNP [dm3] 2R_18791785_SNP [dm6]	C	T	3.831e^-4	0.82	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14566497	X_14566497_SNP [dm3] X_14672464_SNP [dm6]	T	A	3.837e^-4	0.82	INTERGENIC
2R	17575260	2R_17575260_SNP [dm3] 2R_21687755_SNP [dm6]	C	T	3.842e^-4	0.82	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	19444787	X_19444787_SNP [dm3] X_19550754_SNP [dm6]	T	G	3.850e^-4	0.82	UPSTREAM mir-972 & 2 others INTERGENIC
2R	17575262	2R_17575262_SNP [dm3] 2R_21687757_SNP [dm6]	A	G	3.851e^-4	0.82	UPSTREAM Tbp DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16838868	2L_16838868_SNP [dm3] 2L_16838868_SNP [dm6]	C	T	3.860e^-4	0.82	INTRON SclB & 1 other
2R	8555729	2R_8555729_SNP [dm3] 2R_12668224_SNP [dm6]	A	G	3.861e^-4	0.82	INTRON nemy
X	17087633	X_17087633_SNP [dm3] X_17193600_SNP [dm6]	A	T	3.863e^-4	0.82	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15963930	3R_15963930_SNP [dm3] 3R_20138208_SNP [dm6]	A	G	3.865e^-4	0.82	DOWNSTREAM CR42836 INTERGENIC
3L	9579325	3L_9579325_SNP [dm3] 3L_9586225_SNP [dm6]	T	A	3.866e^-4	0.82	INTRON CG42673
X	14239202	X_14239202_SNP [dm3] X_14345169_SNP [dm6]	A	T	3.871e^-4	0.82	INTRON dpr8
3L	3983490	3L_3983490_SNP [dm3] 3L_3983490_SNP [dm6]	G	C	3.873e^-4	0.82	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8370868	3R_8370868_SNP [dm3] 3R_12545146_SNP [dm6]	G	T	3.873e^-4	0.82	INTRON Octbeta3R
3L	16754691	3L_16754691_SNP [dm3] 3L_16761591_SNP [dm6]	C	T	3.874e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	12031926	3L_12031926_SNP [dm3] 3L_12038826_SNP [dm6]	T	G	3.877e^-4	0.82	INTRON rols	TF binding site mE1_TFBS_inv
X	19977137	X_19977137_SNP [dm3] X_20083104_SNP [dm6]	A	G	3.884e^-4	0.82	INTERGENIC
3R	22000446	3R_22000446_SNP [dm3] 3R_26174724_SNP [dm6]	C	A	3.896e^-4	0.82	INTRON CG31323
2R	10480077	2R_10480077_SNP [dm3] 2R_14592572_SNP [dm6]	G	A	3.904e^-4	0.82	UTR_5_PRIME CG12869	TF binding site mE1_TFBS_cad
2R	514513	2R_514513_SNP [dm3] 2R_4627008_SNP [dm6]	T	G	3.904e^-4	0.82	INTERGENIC
2R	17567413	2R_17567413_SNP [dm3] 2R_21679908_SNP [dm6]	G	C	3.906e^-4	0.82	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26455905	3R_26455905_DEL [dm3] 3R_30630183_DEL [dm6]	CA	C	3.906e^-4	0.82	INTERGENIC
3R	2790444	3R_2790444_SNP [dm3] 3R_6964722_SNP [dm6]	T	A	3.910e^-4	0.82	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	13454749	3R_13454749_SNP [dm3] 3R_17629027_SNP [dm6]	T	G	3.910e^-4	0.82	DOWNSTREAM tRNA:V4:90C & 1 other INTERGENIC
3R	15399518	3R_15399518_SNP [dm3] 3R_19573796_SNP [dm6]	C	T	3.913e^-4	0.82	INTRON Dys
2L	10294379	2L_10294379_SNP [dm3] 2L_10294379_SNP [dm6]	G	A	3.940e^-4	0.82	INTRON Hand	regulatory region REDfly_CRMs
2R	5067860	2R_5067860_SNP [dm3] 2R_9180355_SNP [dm6]	T	C	3.950e^-4	0.82	SYNONYMOUS_CODING ltd UPSTREAM ltd INTRON ltd	TF binding site mE1_TFBS_chinmo
3L	13376252	3L_13376252_SNP [dm3] 3L_13383152_SNP [dm6]	C	G	3.955e^-4	0.82	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12826911	2L_12826911_SNP [dm3] 2L_12826911_SNP [dm6]	A	C	3.960e^-4	0.82	INTERGENIC
3L	9113414	3L_9113414_SNP [dm3] 3L_9120314_SNP [dm6]	G	C	3.973e^-4	0.82	INTRON bol
2R	18943284	2R_18943284_SNP [dm3] 2R_23055761_SNP [dm6]	G	A	3.984e^-4	0.82	INTRON CG44252
3R	26088821	3R_26088821_SNP [dm3] 3R_30263099_SNP [dm6]	T	C	3.993e^-4	0.82	INTERGENIC
3R	15958246	3R_15958246_DEL [dm3] 3R_20132524_DEL [dm6]	GCG	G	3.994e^-4	0.82	INTERGENIC
3L	17936566	3L_17936566_SNP [dm3] 3L_17943466_SNP [dm6]	A	C	4.003e^-4	0.82	INTRON CG43174
2L	2215090	2L_2215090_SNP [dm3] 2L_2215090_SNP [dm6]	C	T	4.013e^-4	0.82	SYNONYMOUS_CODING CG34174 UTR_3_PRIME CG10880 UPSTREAM Uch
2L	11813052	2L_11813052_SNP [dm3] 2L_11813052_SNP [dm6]	A	T	4.014e^-4	0.82	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7700606	3L_7700606_SNP [dm3] 3L_7707506_SNP [dm6]	C	T	4.024e^-4	0.82	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8872229	3L_8872229_SNP [dm3] 3L_8879129_SNP [dm6]	A	G	4.036e^-4	0.82	INTRON dally
X	6636796	X_6636796_SNP [dm3] X_6742763_SNP [dm6]	C	T	4.044e^-4	0.82	UPSTREAM snoRNA:Psi28S-3436b DOWNSTREAM snoRNA:Psi28S-1060 & 1 other INTRON RpL17 EXON snoRNA:Psi28S-3436a
3R	11255758	3R_11255758_INS [dm3] 3R_15430036_INS [dm6]	T	TTAACAT	4.051e^-4	0.82	INTRON CG6118
2R	9020410	2R_9020410_SNP [dm3] 2R_13132905_SNP [dm6]	C	A	4.056e^-4	0.82	UPSTREAM Cap-G & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	19934948	X_19934948_SNP [dm3] X_20040915_SNP [dm6]	G	C	4.072e^-4	0.82	INTRON Dop2R
2R	20164608	2R_20164608_SNP [dm3] 2R_24277085_SNP [dm6]	C	T	4.072e^-4	0.82	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8386305	3R_8386305_SNP [dm3] 3R_12560583_SNP [dm6]	G	C	4.073e^-4	0.82	NON_SYNONYMOUS_CODING Octbeta2R
3L	13207273	3L_13207273_SNP [dm3] 3L_13214173_SNP [dm6]	A	G	4.080e^-4	0.82	INTRON tRNA:CR32127	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15412796	2L_15412796_SNP [dm3] 2L_15412796_SNP [dm6]	T	A	4.083e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8817056	2R_8817056_SNP [dm3] 2R_12929551_SNP [dm6]	A	G	4.085e^-4	0.82	INTRON sug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13197468	3R_13197468_SNP [dm3] 3R_17371746_SNP [dm6]	T	C	4.095e^-4	0.82	EXON CR44256
3L	11029375	3L_11029375_DEL [dm3] 3L_11036275_DEL [dm6]	ATGAA	A	4.099e^-4	0.82	DOWNSTREAM CG43693 & 1 other INTERGENIC
3L	11557452	3L_11557452_SNP [dm3] 3L_11564352_SNP [dm6]	A	G	4.103e^-4	0.82	UPSTREAM CG33267 DOWNSTREAM CG7394 INTERGENIC
3L	13917558	3L_13917558_SNP [dm3] 3L_13924458_SNP [dm6]	T	G	4.121e^-4	0.82	INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	8528893	2L_8528893_SNP [dm3] 2L_8528893_SNP [dm6]	A	G	4.129e^-4	0.82	UPSTREAM lmgB & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11037879	2L_11037879_SNP [dm3] 2L_11037879_SNP [dm6]	C	G	4.130e^-4	0.82	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	4.135e^-4	0.82	INTRON sano
3L	16302874	3L_16302874_SNP [dm3] 3L_16309774_SNP [dm6]	G	C	4.143e^-4	0.82	EXON CR32160
3R	19656866	3R_19656866_SNP [dm3] 3R_23831144_SNP [dm6]	G	T	4.149e^-4	0.82	INTRON CG34355
3R	11859227	3R_11859227_SNP [dm3] 3R_16033505_SNP [dm6]	T	G	4.161e^-4	0.82	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2217981	2L_2217981_SNP [dm3] 2L_2217981_SNP [dm6]	C	T	4.165e^-4	0.82	SYNONYMOUS_CODING mio UPSTREAM CG15386 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	4.168e^-4	0.82	INTRON jigr1
2R	14806812	2R_14806812_SNP [dm3] 2R_18919307_SNP [dm6]	G	A	4.168e^-4	0.82	INTRON sano
2L	6388687	2L_6388687_SNP [dm3] 2L_6388687_SNP [dm6]	T	C	4.168e^-4	0.82	INTRON CG42368
3R	17935369	3R_17935369_DEL [dm3] 3R_22109647_DEL [dm6]	ATTTA	A	4.169e^-4	0.82	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15337443	2L_15337443_SNP [dm3] 2L_15337443_SNP [dm6]	T	A	4.177e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8560588	2R_8560588_SNP [dm3] 2R_12673083_SNP [dm6]	T	C	4.185e^-4	0.82	INTRON CG42708	TF binding site mE1_TFBS_cad
3R	12709344	3R_12709344_SNP [dm3] 3R_16883622_SNP [dm6]	T	A	4.187e^-4	0.82	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	12798903	3R_12798903_SNP [dm3] 3R_16973181_SNP [dm6]	T	A	4.190e^-4	0.82	UPSTREAM Abd-B INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	27133478	3R_27133478_SNP [dm3] 3R_31307756_SNP [dm6]	C	G	4.192e^-4	0.82	INTERGENIC
2R	12035419	2R_12035419_SNP [dm3] 2R_16147914_SNP [dm6]	C	T	4.200e^-4	0.82	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8216663	3L_8216663_SNP [dm3] 3L_8223563_SNP [dm6]	G	C	4.205e^-4	0.82	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3R	4603296	3R_4603296_SNP [dm3] 3R_8777574_SNP [dm6]	C	T	4.206e^-4	0.82	SYNONYMOUS_CODING Pif1B UTR_3_PRIME Pif1A DOWNSTREAM CG33191	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26456354	3R_26456354_SNP [dm3] 3R_30630632_SNP [dm6]	C	T	4.222e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14145749	3L_14145749_SNP [dm3] 3L_14152649_SNP [dm6]	T	A	4.223e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	11738941	3L_11738941_DEL [dm3] 3L_11745841_DEL [dm6]	TA	T	4.235e^-4	0.82	INTRON CG6024
3L	16482986	3L_16482986_SNP [dm3] 3L_16489886_SNP [dm6]	G	A	4.240e^-4	0.82	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	9579369	3L_9579369_SNP [dm3] 3L_9586269_SNP [dm6]	G	T	4.253e^-4	0.82	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14327261	3R_14327261_SNP [dm3] 3R_18501539_SNP [dm6]	G	A	4.260e^-4	0.82	INTRON fru	TF binding site BDTNP1_TFBS_da
3R	11867938	3R_11867938_SNP [dm3] 3R_16042216_SNP [dm6]	C	T	4.273e^-4	0.82	DOWNSTREAM pnr INTERGENIC
2L	9551501	2L_9551501_SNP [dm3] 2L_9551501_SNP [dm6]	G	A	4.273e^-4	0.82	UPSTREAM jp INTRON jp
2R	8558980	2R_8558980_SNP [dm3] 2R_12671475_SNP [dm6]	C	T	4.274e^-4	0.82	NON_SYNONYMOUS_CODING CG42708 INTRON CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10445668	2R_10445668_SNP [dm3] 2R_14558163_SNP [dm6]	A	C	4.278e^-4	0.82	INTRON ttv
2L	10062652	2L_10062652_SNP [dm3] 2L_10062652_SNP [dm6]	A	C	4.284e^-4	0.82	SYNONYMOUS_CODING Spn31A
3R	18618340	3R_18618340_SNP [dm3] 3R_22792618_SNP [dm6]	T	A	4.285e^-4	0.82	INTRON CG7029	TF binding site mE1_TFBS_cad
2R	5420919	2R_5420919_SNP [dm3] 2R_9533414_SNP [dm6]	C	G	4.291e^-4	0.82	SYNONYMOUS_CODING brp INTRON brp
3L	14650368	3L_14650368_SNP [dm3] 3L_14657268_SNP [dm6]	C	A	4.292e^-4	0.82	INTRON dlp	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	1261180	2L_1261180_SNP [dm3] 2L_1261180_SNP [dm6]	T	C	4.300e^-4	0.82	INTRON robo3
3R	11898927	3R_11898927_SNP [dm3] 3R_16073205_SNP [dm6]	G	C	4.305e^-4	0.82	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8942715	2L_8942715_SNP [dm3] 2L_8942715_SNP [dm6]	C	A	4.312e^-4	0.82	UPSTREAM CG9510 DOWNSTREAM C1GalTA INTRON CG9515	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	22979475	3R_22979475_SNP [dm3] 3R_27153753_SNP [dm6]	T	G	4.313e^-4	0.82	INTRON Men-b
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	4.318e^-4	0.82	INTRON jigr1
2R	13905778	2R_13905778_SNP [dm3] 2R_18018273_SNP [dm6]	C	T	4.320e^-4	0.82	UPSTREAM CG5084 INTERGENIC
3L	11242440	3L_11242440_SNP [dm3] 3L_11249340_SNP [dm6]	A	G	4.330e^-4	0.82	EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	19142774	3R_19142774_SNP [dm3] 3R_23317052_SNP [dm6]	T	C	4.338e^-4	0.82	INTRON pnt
3L	2174995	3L_2174995_SNP [dm3] 3L_2174995_SNP [dm6]	T	G	4.339e^-4	0.82	UPSTREAM CG15820 INTERGENIC
3R	12806404	3R_12806404_SNP [dm3] 3R_16980682_SNP [dm6]	G	A	4.343e^-4	0.82	INTRON Ahcy89E
3R	15850080	3R_15850080_SNP [dm3] 3R_20024358_SNP [dm6]	T	G	4.350e^-4	0.82	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	19600752	3R_19600752_SNP [dm3] 3R_23775030_SNP [dm6]	A	C	4.352e^-4	0.82	UPSTREAM CG10208 INTRON Nup98-96	TF binding site mE1_TFBS_HSA
2L	5514409	2L_5514409_MNP [dm3] 2L_5514409_MNP [dm6]	CCA	GAC	4.367e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19601363	3R_19601363_SNP [dm3] 3R_23775641_SNP [dm6]	C	T	4.373e^-4	0.82	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12530016	3L_12530016_SNP [dm3] 3L_12536916_SNP [dm6]	C	T	4.377e^-4	0.82	SYNONYMOUS_CODING CG4069 DOWNSTREAM sowah	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16095101	2L_16095101_SNP [dm3] 2L_16095101_SNP [dm6]	A	G	4.380e^-4	0.82	SYNONYMOUS_CODING CG4891
2L	8653400	2L_8653400_SNP [dm3] 2L_8653400_SNP [dm6]	C	T	4.383e^-4	0.82	INTRON Sema-1a
3R	8032627	3R_8032627_SNP [dm3] 3R_12206905_SNP [dm6]	C	A	4.383e^-4	0.82	DOWNSTREAM tRNA:CR31356 INTERGENIC
3L	10722974	3L_10722974_SNP [dm3] 3L_10729874_SNP [dm6]	T	A	4.388e^-4	0.82	INTERGENIC
X	17014940	X_17014940_SNP [dm3] X_17120907_SNP [dm6]	A	G	4.388e^-4	0.82	INTRON CG5004
2L	2925029	2L_2925029_SNP [dm3] 2L_2925029_SNP [dm6]	A	G	4.393e^-4	0.82	UTR_5_PRIME lilli INTRON lilli
X	11580217	X_11580217_SNP [dm3] X_11686184_SNP [dm6]	T	A	4.395e^-4	0.82	INTRON bif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	27456958	3R_27456958_SNP [dm3] 3R_31631236_SNP [dm6]	C	T	4.399e^-4	0.82	INTRON kek6
2L	11191338	2L_11191338_SNP [dm3] 2L_11191338_SNP [dm6]	T	C	4.401e^-4	0.82	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25291514	3R_25291514_SNP [dm3] 3R_29465792_SNP [dm6]	A	G	4.404e^-4	0.82	INTRON Ptp99A
3R	26612735	3R_26612735_INS [dm3] 3R_30787013_INS [dm6]	C	CA	4.411e^-4	0.82	UTR_3_PRIME zfh1
X	20849938	X_20849938_INS [dm3] X_20978911_INS [dm6]	A	AA	4.420e^-4	0.82	DOWNSTREAM CG44426 INTERGENIC
3L	5311633	3L_5311633_SNP [dm3] 3L_5318533_SNP [dm6]	G	A	4.435e^-4	0.82	INTERGENIC
3R	25568524	3R_25568524_SNP [dm3] 3R_29742802_SNP [dm6]	G	A	4.436e^-4	0.82	SYNONYMOUS_CODING CG7609 DOWNSTREAM CG1969	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3890995	3L_3890995_SNP [dm3] 3L_3890995_SNP [dm6]	A	T	4.442e^-4	0.82	DOWNSTREAM CR45422 INTERGENIC
2L	14714345	2L_14714345_SNP [dm3] 2L_14714345_SNP [dm6]	A	C	4.446e^-4	0.82	UTR_3_PRIME CG34165
2L	6981744	2L_6981744_SNP [dm3] 2L_6981744_SNP [dm6]	A	G	4.449e^-4	0.82	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1692131	2L_1692131_SNP [dm3] 2L_1692131_SNP [dm6]	T	A	4.454e^-4	0.82	INTRON chinmo
3L	8900609	3L_8900609_SNP [dm3] 3L_8907509_SNP [dm6]	C	G	4.455e^-4	0.82	INTRON mfr
3L	11227251	3L_11227251_INS [dm3] 3L_11234151_INS [dm6]	G	GG	4.465e^-4	0.82	INTRON Ir68a
2L	6500719	2L_6500719_SNP [dm3] 2L_6500719_SNP [dm6]	A	T	4.467e^-4	0.82	INTRON CG31637
3L	19999768	3L_19999768_SNP [dm3] 3L_20006668_SNP [dm6]	G	C	4.472e^-4	0.82	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6758302	3L_6758302_SNP [dm3] 3L_6765202_SNP [dm6]	G	T	4.482e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	15399385	3R_15399385_SNP [dm3] 3R_19573663_SNP [dm6]	A	C	4.482e^-4	0.82	INTRON Dys
2L	11712972	2L_11712972_INS [dm3] 2L_11712972_INS [dm6]	G	GG	4.483e^-4	0.82	INTERGENIC
3R	11921275	3R_11921275_SNP [dm3] 3R_16095553_SNP [dm6]	A	T	4.487e^-4	0.82	INTRON Mhcl
3R	11674118	3R_11674118_SNP [dm3] 3R_15848396_SNP [dm6]	A	T	4.492e^-4	0.82	UTR_3_PRIME CG4546 INTRON cv-d	TF binding site mE1_TFBS_cad
X	6735440	X_6735440_SNP [dm3] X_6841407_SNP [dm6]	T	C	4.498e^-4	0.82	INTRON CG14435
3R	8161322	3R_8161322_SNP [dm3] 3R_12335600_SNP [dm6]	G	T	4.500e^-4	0.82	UPSTREAM CR44941 INTERGENIC
3R	12806431	3R_12806431_SNP [dm3] 3R_16980709_SNP [dm6]	G	A	4.506e^-4	0.82	INTRON Ahcy89E
2L	11027629	2L_11027629_SNP [dm3] 2L_11027629_SNP [dm6]	T	C	4.506e^-4	0.82	INTRON Samuel
3L	12586106	3L_12586106_SNP [dm3] 3L_12593006_SNP [dm6]	G	A	4.513e^-4	0.82	INTRON ara	TF binding site mE1_TFBS_HSA
3R	10481841	3R_10481841_SNP [dm3] 3R_14656119_SNP [dm6]	A	T	4.513e^-4	0.82	UPSTREAM l_3_L1231 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr
3R	25052940	3R_25052940_SNP [dm3] 3R_29227218_SNP [dm6]	C	G	4.520e^-4	0.82	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
2L	9942658	2L_9942658_SNP [dm3] 2L_9942658_SNP [dm6]	T	A	4.521e^-4	0.82	UTR_3_PRIME CG4619 INTRON CG5853
2R	8558591	2R_8558591_SNP [dm3] 2R_12671086_SNP [dm6]	A	T	4.522e^-4	0.82	UTR_3_PRIME CG42708 UPSTREAM nemy	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	18587349	2L_18587349_SNP [dm3] 2L_18587349_SNP [dm6]	C	T	4.528e^-4	0.82	INTRON Pde11
2L	4011237	2L_4011237_SNP [dm3] 2L_4011237_SNP [dm6]	A	G	4.531e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9933588	2L_9933588_SNP [dm3] 2L_9933588_SNP [dm6]	T	A	4.531e^-4	0.82	UPSTREAM Cpr30F INTERGENIC
2R	7150869	2R_7150869_SNP [dm3] 2R_11263364_SNP [dm6]	A	G	4.532e^-4	0.82	INTERGENIC
3L	1252000	3L_1252000_SNP [dm3] 3L_1252000_SNP [dm6]	G	A	4.538e^-4	0.82	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3R	27398046	3R_27398046_SNP [dm3] 3R_31572324_SNP [dm6]	C	G	4.539e^-4	0.82	UTR_5_PRIME gammaCOP INTRON gammaCOP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	16957982	2L_16957982_SNP [dm3] 2L_16957982_SNP [dm6]	A	G	4.546e^-4	0.82	INTERGENIC
2L	8589223	2L_8589223_SNP [dm3] 2L_8589223_SNP [dm6]	C	A	4.548e^-4	0.82	INTRON Sema-1a
3L	14708171	3L_14708171_SNP [dm3] 3L_14715071_SNP [dm6]	C	T	4.549e^-4	0.82	INTRON ome
3L	2162975	3L_2162975_SNP [dm3] 3L_2162975_SNP [dm6]	A	C	4.549e^-4	0.82	INTRON CG15822

By genomic position
Variant impact
Gene name

mn_StartleResp_CTRL phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results