DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.727e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02648

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.1454	0.0761
In_3R_K	4.9867	0.0826

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2503 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	12866230	2L_12866230_SNP [dm3] 2L_12866230_SNP [dm6]	C	T	1.704e^-7	0.17	INTERGENIC
3R	24632310	3R_24632310_SNP [dm3] 3R_28806588_SNP [dm6]	T	G	1.987e^-7	0.17	UPSTREAM CheB98a INTERGENIC
2L	11597543	2L_11597543_SNP [dm3] 2L_11597543_SNP [dm6]	C	G	4.107e^-7	0.17	INTRON kek2	TF binding site mE1_TFBS_inv
2L	11597544	2L_11597544_SNP [dm3] 2L_11597544_SNP [dm6]	A	C	4.724e^-7	0.17	INTRON kek2	TF binding site mE1_TFBS_inv
2L	12866005	2L_12866005_DEL [dm3] 2L_12866005_DEL [dm6]	CT	C	5.206e^-7	0.17	INTERGENIC
2L	12865301	2L_12865301_SNP [dm3] 2L_12865301_SNP [dm6]	C	T	5.533e^-7	0.17	INTERGENIC
2L	12875748	2L_12875748_SNP [dm3] 2L_12875748_SNP [dm6]	T	G	6.342e^-7	0.17	INTERGENIC
2L	12866368	2L_12866368_SNP [dm3] 2L_12866368_SNP [dm6]	G	T	8.504e^-7	0.199	INTERGENIC
2L	12875632	2L_12875632_DEL [dm3] 2L_12875632_DEL [dm6]	GA	G	1.441e^-6	0.287	INTERGENIC
2R	14359261	2R_14359261_SNP [dm3] 2R_18471756_SNP [dm6]	T	A	1.898e^-6	0.287	INTRON CG30116
3R	15181495	3R_15181495_SNP [dm3] 3R_19355773_SNP [dm6]	A	T	1.977e^-6	0.287	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11587959	3R_11587959_SNP [dm3] 3R_15762237_SNP [dm6]	G	T	1.983e^-6	0.287	UPSTREAM CG12784 INTERGENIC
2L	11597564	2L_11597564_SNP [dm3] 2L_11597564_SNP [dm6]	G	A	1.988e^-6	0.287	INTRON kek2	TF binding site mE1_TFBS_inv
2L	12875210	2L_12875210_DEL [dm3] 2L_12875210_DEL [dm6]	TACCCCAA	T	2.372e^-6	0.315	INTERGENIC
2L	12873796	2L_12873796_DEL [dm3] 2L_12873796_DEL [dm6]	CACTC	C	2.516e^-6	0.315	INTERGENIC
2L	8784561	2L_8784561_SNP [dm3] 2L_8784561_SNP [dm6]	T	C	3.029e^-6	0.355	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	16561852	3R_16561852_SNP [dm3] 3R_20736130_SNP [dm6]	C	T	3.252e^-6	0.359	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	9561228	2L_9561228_DEL [dm3] 2L_9561228_DEL [dm6]	TT	T	3.597e^-6	0.375	UPSTREAM jp INTRON jp
2L	13044388	2L_13044388_SNP [dm3] 2L_13044388_SNP [dm6]	G	A	4.474e^-6	0.377	INTRON CG9932
2L	12834274	2L_12834274_SNP [dm3] 2L_12834274_SNP [dm6]	C	A	5.136e^-6	0.377	INTERGENIC
2R	4646609	2R_4646609_SNP [dm3] 2R_8759104_SNP [dm6]	G	A	5.354e^-6	0.377	INTRON CG8740	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	21402355	3R_21402355_SNP [dm3] 3R_25576633_SNP [dm6]	C	T	5.508e^-6	0.377	INTRON msi
2L	21885277	2L_21885277_SNP [dm3] 2L_21885277_SNP [dm6]	A	T	5.815e^-6	0.377	INTERGENIC
2L	11597621	2L_11597621_SNP [dm3] 2L_11597621_SNP [dm6]	A	G	5.898e^-6	0.377	INTRON kek2	TF binding site mE1_TFBS_inv
2L	8784567	2L_8784567_SNP [dm3] 2L_8784567_SNP [dm6]	G	T	5.983e^-6	0.377	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	12226685	2L_12226685_SNP [dm3] 2L_12226685_SNP [dm6]	T	G	6.907e^-6	0.377	INTRON aret
3R	20433750	3R_20433750_DEL [dm3] 3R_24608028_DEL [dm6]	TGT	T	7.116e^-6	0.377	INTRON mld
2R	19935425	2R_19935425_SNP [dm3] 2R_24047902_SNP [dm6]	T	A	7.127e^-6	0.377	UTR_5_PRIME sei INTRON gammaSnap1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16561903	3R_16561903_SNP [dm3] 3R_20736181_SNP [dm6]	A	G	7.210e^-6	0.377	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	18564634	2R_18564634_SNP [dm3] 2R_22677129_SNP [dm6]	G	C	7.433e^-6	0.377	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2047570	3L_2047570_SNP [dm3] 3L_2047570_SNP [dm6]	G	T	7.494e^-6	0.377	SYNONYMOUS_CODING sls
3R	16561984	3R_16561984_SNP [dm3] 3R_20736262_SNP [dm6]	C	T	7.592e^-6	0.377	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	9880849	3R_9880849_SNP [dm3] 3R_14055127_SNP [dm6]	C	T	7.708e^-6	0.377	INTERGENIC
2L	11597810	2L_11597810_SNP [dm3] 2L_11597810_SNP [dm6]	A	G	7.748e^-6	0.377	INTRON kek2
2L	8783408	2L_8783408_SNP [dm3] 2L_8783408_SNP [dm6]	C	A	7.981e^-6	0.377	UPSTREAM CG42710 INTERGENIC
3L	3242220	3L_3242220_SNP [dm3] 3L_3242220_SNP [dm6]	G	A	8.117e^-6	0.377	INTERGENIC
3R	16561974	3R_16561974_SNP [dm3] 3R_20736252_SNP [dm6]	A	G	8.136e^-6	0.377	NON_SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	12866101	2L_12866101_SNP [dm3] 2L_12866101_SNP [dm6]	T	A	8.396e^-6	0.377	INTERGENIC
3R	16561894	3R_16561894_SNP [dm3] 3R_20736172_SNP [dm6]	A	C	8.455e^-6	0.377	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	20433786	3R_20433786_DEL [dm3] 3R_24608064_DEL [dm6]	CTACAATTCA	C	8.484e^-6	0.377	INTRON mld
2L	12866505	2L_12866505_DEL [dm3] 2L_12866505_DEL [dm6]	TGCTAAGCACAAGT...	T	8.519e^-6	0.377	INTERGENIC
X	16550703	X_16550703_SNP [dm3] X_16656670_SNP [dm6]	A	G	8.741e^-6	0.377	SYNONYMOUS_CODING r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	12865088	2L_12865088_SNP [dm3] 2L_12865088_SNP [dm6]	A	C	8.855e^-6	0.377	INTERGENIC
3R	24847825	3R_24847825_INS [dm3] 3R_29022103_INS [dm6]	T	TC	8.855e^-6	0.377	UPSTREAM CR45567 EXON CR44264
3R	16254549	3R_16254549_SNP [dm3] 3R_20428827_SNP [dm6]	A	C	9.286e^-6	0.387	INTRON Gfrl
3R	16767467	3R_16767467_SNP [dm3] 3R_20941745_SNP [dm6]	C	T	1.006e^-5	0.394	INTRON CG31191
2L	12858565	2L_12858565_SNP [dm3] 2L_12858565_SNP [dm6]	A	T	1.033e^-5	0.394	INTERGENIC
3L	3776685	3L_3776685_SNP [dm3] 3L_3776685_SNP [dm6]	A	G	1.036e^-5	0.394	INTRON CG32264
3R	23893983	3R_23893983_SNP [dm3] 3R_28068261_SNP [dm6]	G	T	1.038e^-5	0.394	INTRON CG34362
3R	16562035	3R_16562035_SNP [dm3] 3R_20736313_SNP [dm6]	A	C	1.049e^-5	0.394	DOWNSTREAM CR42786 & 1 other INTRON cdc2c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	16254515	3R_16254515_SNP [dm3] 3R_20428793_SNP [dm6]	A	C	1.090e^-5	0.4	INTRON Gfrl
3L	3776678	3L_3776678_SNP [dm3] 3L_3776678_SNP [dm6]	G	A	1.109e^-5	0.4	INTRON CG32264
2L	12869341	2L_12869341_SNP [dm3] 2L_12869341_SNP [dm6]	A	G	1.160e^-5	0.411	INTERGENIC
2L	12872282	2L_12872282_SNP [dm3] 2L_12872282_SNP [dm6]	T	G	1.254e^-5	0.414	INTERGENIC
3L	4207400	3L_4207400_SNP [dm3] 3L_4207400_SNP [dm6]	T	A	1.256e^-5	0.414	DOWNSTREAM Cpr64Aa INTRON CG43367
3L	16115014	3L_16115014_SNP [dm3] 3L_16121914_SNP [dm6]	C	T	1.258e^-5	0.414	UPSTREAM CG12272 DOWNSTREAM Taf4 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12865256	2L_12865256_SNP [dm3] 2L_12865256_SNP [dm6]	A	C	1.283e^-5	0.414	INTERGENIC
3L	10266841	3L_10266841_SNP [dm3] 3L_10273741_SNP [dm6]	C	T	1.283e^-5	0.414	SYNONYMOUS_CODING Or67d
2L	13225955	2L_13225955_DEL [dm3] 2L_13225955_DEL [dm6]	TCACT	T	1.303e^-5	0.414	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3R	15149600	3R_15149600_SNP [dm3] 3R_19323878_SNP [dm6]	G	A	1.406e^-5	0.436	INTRON Dl
2L	12878015	2L_12878015_SNP [dm3] 2L_12878015_SNP [dm6]	T	C	1.419e^-5	0.436	INTERGENIC
3R	16562031	3R_16562031_SNP [dm3] 3R_20736309_SNP [dm6]	C	A	1.522e^-5	0.447	DOWNSTREAM CR42786 & 1 other INTRON cdc2c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	17846754	2R_17846754_SNP [dm3] 2R_21959249_SNP [dm6]	G	C	1.540e^-5	0.447	INTERGENIC
2L	8783849	2L_8783849_SNP [dm3] 2L_8783849_SNP [dm6]	T	G	1.570e^-5	0.447	INTERGENIC
3R	24632489	3R_24632489_SNP [dm3] 3R_28806767_SNP [dm6]	C	T	1.576e^-5	0.447	SYNONYMOUS_CODING CheB98a
2L	1705693	2L_1705693_SNP [dm3] 2L_1705693_SNP [dm6]	G	A	1.578e^-5	0.447	SYNONYMOUS_CODING cpb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11597549	2L_11597549_SNP [dm3] 2L_11597549_SNP [dm6]	T	C	1.597e^-5	0.447	INTRON kek2	TF binding site mE1_TFBS_inv
3R	18460021	3R_18460021_SNP [dm3] 3R_22634299_SNP [dm6]	T	C	1.662e^-5	0.45	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3776937	3L_3776937_SNP [dm3] 3L_3776937_SNP [dm6]	A	C	1.673e^-5	0.45	INTRON CG32264
2L	4265787	2L_4265787_SNP [dm3] 2L_4265787_SNP [dm6]	C	G	1.679e^-5	0.45	INTERGENIC
2L	12865246	2L_12865246_SNP [dm3] 2L_12865246_SNP [dm6]	T	C	1.743e^-5	0.46	INTERGENIC
3R	20433862	3R_20433862_SNP [dm3] 3R_24608140_SNP [dm6]	G	A	1.785e^-5	0.46	INTRON mld
3R	16258263	3R_16258263_SNP [dm3] 3R_20432541_SNP [dm6]	T	A	1.825e^-5	0.46	INTRON Gfrl
2L	12878727	2L_12878727_SNP [dm3] 2L_12878727_SNP [dm6]	A	G	1.862e^-5	0.46	INTERGENIC
3R	15184463	3R_15184463_SNP [dm3] 3R_19358741_SNP [dm6]	C	T	1.863e^-5	0.46	INTERGENIC
3R	16561639	3R_16561639_SNP [dm3] 3R_20735917_SNP [dm6]	G	A	1.870e^-5	0.46	UPSTREAM mir-995 DOWNSTREAM CR42786 INTRON cdc2c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	24827437	3R_24827437_SNP [dm3] 3R_29001715_SNP [dm6]	A	G	1.893e^-5	0.46	INTRON wat
3L	2043687	3L_2043687_SNP [dm3] 3L_2043687_SNP [dm6]	T	A	1.931e^-5	0.46	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7778971	X_7778971_SNP [dm3] X_7884938_SNP [dm6]	T	C	1.957e^-5	0.46	SYNONYMOUS_CODING Ir7g UPSTREAM Ir7f
3R	16561922	3R_16561922_SNP [dm3] 3R_20736200_SNP [dm6]	C	T	1.971e^-5	0.46	SYNONYMOUS_CODING cdc2c DOWNSTREAM CR42786 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	10592710	2L_10592710_SNP [dm3] 2L_10592710_SNP [dm6]	T	A	2.014e^-5	0.46	INTRON Trim9
3R	22546616	3R_22546616_SNP [dm3] 3R_26720894_SNP [dm6]	T	A	2.040e^-5	0.46	INTRON CG6420	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20433904	3R_20433904_SNP [dm3] 3R_24608182_SNP [dm6]	A	T	2.063e^-5	0.46	INTRON mld
2L	12865180	2L_12865180_SNP [dm3] 2L_12865180_SNP [dm6]	A	G	2.084e^-5	0.46	INTERGENIC
3R	15184459	3R_15184459_SNP [dm3] 3R_19358737_SNP [dm6]	A	T	2.089e^-5	0.46	INTERGENIC
2L	20827688	2L_20827688_SNP [dm3] 2L_20827688_SNP [dm6]	C	T	2.108e^-5	0.46	UTR_3_PRIME CG9331
2L	19240811	2L_19240811_SNP [dm3] 2L_19240811_SNP [dm6]	C	T	2.218e^-5	0.462	INTERGENIC
3R	9880894	3R_9880894_SNP [dm3] 3R_14055172_SNP [dm6]	C	A	2.232e^-5	0.462	INTERGENIC
3R	15186073	3R_15186073_SNP [dm3] 3R_19360351_SNP [dm6]	C	A	2.258e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15186075	3R_15186075_SNP [dm3] 3R_19360353_SNP [dm6]	G	C	2.258e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15186088	3R_15186088_SNP [dm3] 3R_19360366_SNP [dm6]	A	T	2.258e^-5	0.462	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20433915	3R_20433915_SNP [dm3] 3R_24608193_SNP [dm6]	C	G	2.266e^-5	0.462	INTRON mld
2L	12201024	2L_12201024_DEL [dm3] 2L_12201024_DEL [dm6]	CTTTATGAACTCAGAG...	C	2.297e^-5	0.463	UPSTREAM aret INTRON aret
X	4401547	X_4401547_SNP [dm3] X_4507514_SNP [dm6]	G	C	2.389e^-5	0.474	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19130061	2R_19130061_SNP [dm3] 2R_23242538_SNP [dm6]	A	G	2.399e^-5	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12866132	2L_12866132_SNP [dm3] 2L_12866132_SNP [dm6]	A	T	2.457e^-5	0.48	INTERGENIC
3R	15185308	3R_15185308_SNP [dm3] 3R_19359586_SNP [dm6]	T	C	2.526e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15186136	3R_15186136_DEL [dm3] 3R_19360414_DEL [dm6]	GGATCTATG	G	2.564e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15186188	3R_15186188_SNP [dm3] 3R_19360466_SNP [dm6]	T	C	2.573e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	17694803	2R_17694803_SNP [dm3] 2R_21807298_SNP [dm6]	A	T	2.601e^-5	0.482	INTERGENIC
2R	1755828	2R_1755828_SNP [dm3] 2R_5868323_SNP [dm6]	C	A	2.603e^-5	0.482	INTERGENIC
2L	11597552	2L_11597552_SNP [dm3] 2L_11597552_SNP [dm6]	C	G	2.622e^-5	0.482	INTRON kek2	TF binding site mE1_TFBS_inv
X	3773159	X_3773159_SNP [dm3] X_3879126_SNP [dm6]	G	A	2.773e^-5	0.496	SYNONYMOUS_CODING CG2930 DOWNSTREAM CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10905128	3R_10905128_SNP [dm3] 3R_15079406_SNP [dm6]	A	G	2.774e^-5	0.496	UTR_3_PRIME CG6966 UPSTREAM CG6974
3L	12337105	3L_12337105_SNP [dm3] 3L_12344005_SNP [dm6]	T	G	2.810e^-5	0.496	INTRON CrzR
3L	14105475	3L_14105475_INS [dm3] 3L_14112375_INS [dm6]	G	TTTATT	2.811e^-5	0.496	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	12872118	2L_12872118_SNP [dm3] 2L_12872118_SNP [dm6]	A	T	2.895e^-5	0.496	INTERGENIC
2L	12865182	2L_12865182_SNP [dm3] 2L_12865182_SNP [dm6]	T	A	2.898e^-5	0.496	INTERGENIC
3R	16990390	3R_16990390_SNP [dm3] 3R_21164668_SNP [dm6]	G	T	2.918e^-5	0.496	NON_SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma
2R	3687915	2R_3687915_SNP [dm3] 2R_7800410_SNP [dm6]	C	T	2.929e^-5	0.496	SYNONYMOUS_CODING mus205 DOWNSTREAM Nop17l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10205427	3R_10205427_SNP [dm3] 3R_14379705_SNP [dm6]	T	G	2.933e^-5	0.496	DOWNSTREAM soti INTERGENIC
3R	16254449	3R_16254449_SNP [dm3] 3R_20428727_SNP [dm6]	G	A	3.084e^-5	0.502	INTRON Gfrl
3R	24922046	3R_24922046_SNP [dm3] 3R_29096324_SNP [dm6]	T	C	3.084e^-5	0.502	INTRON CG11873 EXON CR45030
3R	15186211	3R_15186211_SNP [dm3] 3R_19360489_SNP [dm6]	A	G	3.086e^-5	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	14808525	2R_14808525_SNP [dm3] 2R_18921020_SNP [dm6]	A	C	3.092e^-5	0.502	INTRON sano
3R	22546638	3R_22546638_SNP [dm3] 3R_26720916_SNP [dm6]	C	A	3.106e^-5	0.502	SPLICE_SITE_REGION CG6420 INTRON CG6420	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22609772	3R_22609772_SNP [dm3] 3R_26784050_SNP [dm6]	C	T	3.135e^-5	0.503	UTR_5_PRIME CG42789 UPSTREAM CG42790
3L	17147921	3L_17147921_SNP [dm3] 3L_17154821_SNP [dm6]	T	A	3.218e^-5	0.505	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9880875	3R_9880875_SNP [dm3] 3R_14055153_SNP [dm6]	A	G	3.265e^-5	0.505	INTERGENIC
3R	4167238	3R_4167238_SNP [dm3] 3R_8341516_SNP [dm6]	C	T	3.267e^-5	0.505	SYNONYMOUS_CODING Arl2 UPSTREAM CG9603 DOWNSTREAM CG9601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12781393	2R_12781393_SNP [dm3] 2R_16893888_SNP [dm6]	C	A	3.278e^-5	0.505	INTRON CG8910
3R	25236268	3R_25236268_SNP [dm3] 3R_29410546_SNP [dm6]	A	G	3.333e^-5	0.505	INTRON Ptp99A
3L	3243596	3L_3243596_SNP [dm3] 3L_3243596_SNP [dm6]	C	G	3.337e^-5	0.505	NON_SYNONYMOUS_CODING CG12078
3R	19725127	3R_19725127_SNP [dm3] 3R_23899405_SNP [dm6]	T	A	3.356e^-5	0.505	SYNONYMOUS_CODING sba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2040697	3L_2040697_SNP [dm3] 3L_2040697_SNP [dm6]	A	G	3.454e^-5	0.505	INTRON sls
3R	16256036	3R_16256036_SNP [dm3] 3R_20430314_SNP [dm6]	G	A	3.481e^-5	0.505	INTRON Gfrl
2L	12866621	2L_12866621_DEL [dm3] 2L_12866621_DEL [dm6]	CC	C	3.484e^-5	0.505	INTERGENIC
2R	14359188	2R_14359188_SNP [dm3] 2R_18471683_SNP [dm6]	C	A	3.489e^-5	0.505	INTRON CG30116
3R	16254559	3R_16254559_SNP [dm3] 3R_20428837_SNP [dm6]	G	A	3.496e^-5	0.505	INTRON Gfrl
3R	9880876	3R_9880876_SNP [dm3] 3R_14055154_SNP [dm6]	T	C	3.531e^-5	0.505	INTERGENIC
3R	10652474	3R_10652474_SNP [dm3] 3R_14826752_SNP [dm6]	A	G	3.540e^-5	0.505	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9199723	3L_9199723_SNP [dm3] 3L_9206623_SNP [dm6]	C	T	3.558e^-5	0.505	UPSTREAM Slc45-1 INTRON Slc45-1
2L	12865185	2L_12865185_SNP [dm3] 2L_12865185_SNP [dm6]	A	T	3.615e^-5	0.506	INTERGENIC
2L	12226680	2L_12226680_SNP [dm3] 2L_12226680_SNP [dm6]	G	T	3.723e^-5	0.506	INTRON aret
2L	12226681	2L_12226681_SNP [dm3] 2L_12226681_SNP [dm6]	G	T	3.723e^-5	0.506	INTRON aret
2L	19531193	2L_19531193_SNP [dm3] 2L_19531193_SNP [dm6]	C	T	3.727e^-5	0.506	SYNONYMOUS_CODING CG10137 UPSTREAM CG10165	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	7089376	3R_7089376_SNP [dm3] 3R_11263654_SNP [dm6]	G	T	3.737e^-5	0.506	INTERGENIC
3R	22546625	3R_22546625_SNP [dm3] 3R_26720903_SNP [dm6]	A	T	3.759e^-5	0.506	INTRON CG6420	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16620589	3R_16620589_SNP [dm3] 3R_20794867_SNP [dm6]	G	C	3.789e^-5	0.506	INTRON Syp
3R	22227636	3R_22227636_SNP [dm3] 3R_26401914_SNP [dm6]	G	C	3.816e^-5	0.506	NON_SYNONYMOUS_CODING ppk15
3L	5243908	3L_5243908_SNP [dm3] 3L_5250808_SNP [dm6]	C	T	3.834e^-5	0.506	INTRON shep
3R	22723407	3R_22723407_SNP [dm3] 3R_26897685_SNP [dm6]	A	G	3.862e^-5	0.506	INTRON T48	regulatory region REDfly_CRMs
2L	11597563	2L_11597563_SNP [dm3] 2L_11597563_SNP [dm6]	G	A	3.878e^-5	0.506	INTRON kek2	TF binding site mE1_TFBS_inv
2L	11596170	2L_11596170_SNP [dm3] 2L_11596170_SNP [dm6]	G	A	3.888e^-5	0.506	INTRON kek2
3R	19917361	3R_19917361_SNP [dm3] 3R_24091639_SNP [dm6]	A	G	4.017e^-5	0.512	INTRON 4EHP
3R	16256013	3R_16256013_INS [dm3] 3R_20430291_INS [dm6]	T	TATAAATATACCCGAT...	4.048e^-5	0.512	INTRON Gfrl
2L	12878888	2L_12878888_DEL [dm3] 2L_12878888_DEL [dm6]	TT	T	4.101e^-5	0.512	INTERGENIC
3R	20433847	3R_20433847_SNP [dm3] 3R_24608125_SNP [dm6]	C	A	4.122e^-5	0.512	INTRON mld
2R	19063790	2R_19063790_SNP [dm3] 2R_23176267_SNP [dm6]	G	C	4.145e^-5	0.512	SYNONYMOUS_CODING CG34371
2L	12872117	2L_12872117_SNP [dm3] 2L_12872117_SNP [dm6]	G	A	4.148e^-5	0.512	INTERGENIC
2L	20899859	2L_20899859_DEL [dm3] 2L_20899859_DEL [dm6]	TTTCAACCACAAGT...	T	4.152e^-5	0.512	INTRON sky & 1 other
2L	20910592	2L_20910592_SNP [dm3] 2L_20910592_SNP [dm6]	G	C	4.152e^-5	0.512	INTRON sky & 1 other
3R	15769752	3R_15769752_DEL [dm3] 3R_19944030_DEL [dm6]	TT	T	4.175e^-5	0.512	INTRON Hs6st
3L	12337092	3L_12337092_SNP [dm3] 3L_12343992_SNP [dm6]	G	A	4.283e^-5	0.517	INTRON CrzR
3L	521794	3L_521794_SNP [dm3] 3L_521794_SNP [dm6]	C	A	4.295e^-5	0.517	INTRON klar
X	13010288	X_13010288_SNP [dm3] X_13116255_SNP [dm6]	G	A	4.304e^-5	0.517	INTRON CG42237
2L	12872835	2L_12872835_SNP [dm3] 2L_12872835_SNP [dm6]	A	G	4.383e^-5	0.521	INTERGENIC
3L	3777089	3L_3777089_SNP [dm3] 3L_3777089_SNP [dm6]	T	C	4.386e^-5	0.521	INTRON CG32264
3R	20433874	3R_20433874_SNP [dm3] 3R_24608152_SNP [dm6]	T	A	4.428e^-5	0.522	INTRON mld
2L	6698944	2L_6698944_SNP [dm3] 2L_6698944_SNP [dm6]	G	A	4.465e^-5	0.523	INTRON Tsp
3R	17400889	3R_17400889_SNP [dm3] 3R_21575167_SNP [dm6]	G	T	4.554e^-5	0.531	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21872767	2L_21872767_SNP [dm3] 2L_21872767_SNP [dm6]	C	G	4.633e^-5	0.532	INTERGENIC
2L	1269229	2L_1269229_SNP [dm3] 2L_1269229_SNP [dm6]	A	G	4.659e^-5	0.532	INTRON robo3
X	1991748	X_1991748_SNP [dm3] X_2097715_SNP [dm6]	C	T	4.661e^-5	0.532	INTRON csw	TF binding site mE1_TFBS_sens
X	16453572	X_16453572_SNP [dm3] X_16559539_SNP [dm6]	C	T	4.680e^-5	0.532	UTR_5_PRIME Pp2B-14D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2L	12226700	2L_12226700_SNP [dm3] 2L_12226700_SNP [dm6]	G	T	4.767e^-5	0.539	INTRON aret
2L	18817032	2L_18817032_SNP [dm3] 2L_18817032_SNP [dm6]	A	G	4.838e^-5	0.539	INTERGENIC
3L	3093593	3L_3093593_SNP [dm3] 3L_3093593_SNP [dm6]	G	A	4.838e^-5	0.539	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12865264	2L_12865264_DEL [dm3] 2L_12865264_DEL [dm6]	GG	G	4.899e^-5	0.539	INTERGENIC
2L	12874753	2L_12874753_DEL [dm3] 2L_12874753_DEL [dm6]	CAC	C	4.900e^-5	0.539	INTERGENIC
X	6429181	X_6429181_SNP [dm3] X_6535148_SNP [dm6]	T	C	4.915e^-5	0.539	INTRON dx	TF binding site BDTNP1_TFBS_dl
3L	12337135	3L_12337135_SNP [dm3] 3L_12344035_SNP [dm6]	T	A	5.023e^-5	0.548	INTRON CrzR
2L	10592851	2L_10592851_INS [dm3] 2L_10592851_INS [dm6]	C	CC	5.054e^-5	0.548	INTRON Trim9
3R	7108798	3R_7108798_SNP [dm3] 3R_11283076_SNP [dm6]	T	A	5.083e^-5	0.548	INTRON CR31386
3R	7089525	3R_7089525_SNP [dm3] 3R_11263803_SNP [dm6]	G	T	5.364e^-5	0.575	INTERGENIC
2L	1316200	2L_1316200_SNP [dm3] 2L_1316200_SNP [dm6]	G	A	5.415e^-5	0.577	INTERGENIC
X	19724078	X_19724078_SNP [dm3] X_19830045_SNP [dm6]	A	G	5.470e^-5	0.58	DOWNSTREAM pico INTERGENIC
2L	12340044	2L_12340044_SNP [dm3] 2L_12340044_SNP [dm6]	C	T	5.520e^-5	0.582	DOWNSTREAM CG31862 INTERGENIC
3L	19314531	3L_19314531_SNP [dm3] 3L_19321431_SNP [dm6]	G	A	5.628e^-5	0.589	INTRON pip
2L	5563260	2L_5563260_SNP [dm3] 2L_5563260_SNP [dm6]	A	G	5.668e^-5	0.589	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2L	20919724	2L_20919724_SNP [dm3] 2L_20919724_SNP [dm6]	G	A	5.725e^-5	0.589	SYNONYMOUS_CODING Mtp UPSTREAM sky & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14681845	2R_14681845_SNP [dm3] 2R_18794340_SNP [dm6]	A	G	5.825e^-5	0.589	UTR_3_PRIME CG15080 DOWNSTREAM MFS15
2L	20900335	2L_20900335_SNP [dm3] 2L_20900335_SNP [dm6]	A	C	5.840e^-5	0.589	UPSTREAM CR33317 INTRON sky & 1 other
3R	20012275	3R_20012275_INS [dm3] 3R_24186553_INS [dm6]	C	CGTTAAAGTC	5.848e^-5	0.589	INTRON CHORD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19226387	3L_19226387_SNP [dm3] 3L_19233287_SNP [dm6]	A	G	5.862e^-5	0.589	INTRON fz2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12865368	2L_12865368_INS [dm3] 2L_12865368_INS [dm6]	T	TT	5.888e^-5	0.589	INTERGENIC
2R	14359187	2R_14359187_SNP [dm3] 2R_18471682_SNP [dm6]	A	C	5.897e^-5	0.589	INTRON CG30116
3R	15144812	3R_15144812_SNP [dm3] 3R_19319090_SNP [dm6]	G	A	5.941e^-5	0.589	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16957982	2L_16957982_SNP [dm3] 2L_16957982_SNP [dm6]	A	G	5.971e^-5	0.589	INTERGENIC
2R	16998604	2R_16998604_SNP [dm3] 2R_21111099_SNP [dm6]	C	T	5.988e^-5	0.589	INTRON ktub
2L	12878073	2L_12878073_SNP [dm3] 2L_12878073_SNP [dm6]	C	T	6.056e^-5	0.589	INTERGENIC
2L	18817055	2L_18817055_SNP [dm3] 2L_18817055_SNP [dm6]	T	C	6.060e^-5	0.589	INTERGENIC
2R	6103116	2R_6103116_SNP [dm3] 2R_10215611_SNP [dm6]	G	A	6.094e^-5	0.589	INTRON Hr46 & 1 other
2L	18817052	2L_18817052_SNP [dm3] 2L_18817052_SNP [dm6]	A	T	6.153e^-5	0.589	INTERGENIC
3L	3242338	3L_3242338_SNP [dm3] 3L_3242338_SNP [dm6]	G	A	6.163e^-5	0.589	DOWNSTREAM CG12078 INTERGENIC
2L	13226086	2L_13226086_SNP [dm3] 2L_13226086_SNP [dm6]	C	T	6.180e^-5	0.589	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	3228362	3R_3228362_SNP [dm3] 3R_7402640_SNP [dm6]	G	A	6.187e^-5	0.589	INTERGENIC
X	19724096	X_19724096_DEL [dm3] X_19830063_DEL [dm6]	AA	A	6.352e^-5	0.6	DOWNSTREAM pico INTERGENIC
2R	18097057	2R_18097057_SNP [dm3] 2R_22209552_SNP [dm6]	G	A	6.367e^-5	0.6	INTRON CG3264
2R	13864102	2R_13864102_SNP [dm3] 2R_17976597_SNP [dm6]	C	T	6.411e^-5	0.601	INTRON dpr13
2L	11597539	2L_11597539_SNP [dm3] 2L_11597539_SNP [dm6]	T	A	6.550e^-5	0.611	INTRON kek2	TF binding site mE1_TFBS_inv
3R	23179854	3R_23179854_SNP [dm3] 3R_27354132_SNP [dm6]	G	A	6.697e^-5	0.62	INTRON CG42534
3L	3777943	3L_3777943_SNP [dm3] 3L_3777943_SNP [dm6]	T	A	6.705e^-5	0.62	INTRON CG32264
2L	12877203	2L_12877203_SNP [dm3] 2L_12877203_SNP [dm6]	G	A	6.817e^-5	0.627	INTERGENIC
2L	16241562	2L_16241562_DEL [dm3] 2L_16241562_DEL [dm6]	TTA	T	6.886e^-5	0.628	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
X	6204667	X_6204667_SNP [dm3] X_6310634_SNP [dm6]	C	T	6.900e^-5	0.628	INTRON CG15894	TF binding site mE1_TFBS_Trl
2L	12877820	2L_12877820_SNP [dm3] 2L_12877820_SNP [dm6]	T	G	6.963e^-5	0.629	INTERGENIC
3R	18493443	3R_18493443_SNP [dm3] 3R_22667721_SNP [dm6]	A	C	6.989e^-5	0.629	INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12874072	2L_12874072_SNP [dm3] 2L_12874072_SNP [dm6]	A	C	7.006e^-5	0.629	INTERGENIC
3R	17400883	3R_17400883_SNP [dm3] 3R_21575161_SNP [dm6]	T	C	7.074e^-5	0.632	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	22014205	2L_22014205_SNP [dm3] 2L_22014205_SNP [dm6]	T	C	7.150e^-5	0.636	UPSTREAM CG31693 INTERGENIC
2L	19195125	2L_19195125_SNP [dm3] 2L_19195125_SNP [dm6]	C	T	7.326e^-5	0.646	INTRON drl	regulatory region REDfly_CRMs
2R	14672231	2R_14672231_SNP [dm3] 2R_18784726_SNP [dm6]	G	A	7.338e^-5	0.646	INTRON CG15080	enhancer mE1_CBP_Enhancers
2L	18817060	2L_18817060_SNP [dm3] 2L_18817060_SNP [dm6]	C	A	7.414e^-5	0.65	INTERGENIC
3L	20697776	3L_20697776_SNP [dm3] 3L_20704676_SNP [dm6]	C	G	7.485e^-5	0.65	INTERGENIC
2L	13200916	2L_13200916_SNP [dm3] 2L_13200916_SNP [dm6]	T	A	7.490e^-5	0.65	SYNONYMOUS_CODING CG16972	TF binding site mE1_TFBS_cad
2R	10681358	2R_10681358_DEL [dm3] 2R_14793853_DEL [dm6]	AA	C	7.515e^-5	0.65	INTRON kn	TF binding site mE1_TFBS_sens
3R	16743124	3R_16743124_SNP [dm3] 3R_20917402_SNP [dm6]	G	A	7.558e^-5	0.65	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
2R	18097005	2R_18097005_SNP [dm3] 2R_22209500_SNP [dm6]	A	T	7.612e^-5	0.652	SYNONYMOUS_CODING CG3264
2R	17380625	2R_17380625_SNP [dm3] 2R_21493120_SNP [dm6]	G	A	7.789e^-5	0.656	INTRON Fkbp14
3R	23945085	3R_23945085_SNP [dm3] 3R_28119363_SNP [dm6]	G	A	7.812e^-5	0.656	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26663336	3R_26663336_DEL [dm3] 3R_30837614_DEL [dm6]	AAATG	T	7.816e^-5	0.656	INTRON CG15544
3R	26663342	3R_26663342_INS [dm3] 3R_30837620_INS [dm6]	C	CGACCTGATG	7.816e^-5	0.656	INTRON CG15544
2L	14994604	2L_14994604_SNP [dm3] 2L_14994604_SNP [dm6]	C	A	7.873e^-5	0.656	INTRON mol
3R	21716384	3R_21716384_SNP [dm3] 3R_25890662_SNP [dm6]	A	C	7.941e^-5	0.656	INTRON Lnk	TF binding site mE1_TFBS_chinmo
3R	21716386	3R_21716386_SNP [dm3] 3R_25890664_SNP [dm6]	C	A	7.941e^-5	0.656	INTRON Lnk	TF binding site mE1_TFBS_chinmo
2L	21886062	2L_21886062_SNP [dm3] 2L_21886062_SNP [dm6]	A	G	7.949e^-5	0.656	INTERGENIC
3R	15150055	3R_15150055_SNP [dm3] 3R_19324333_SNP [dm6]	G	A	8.027e^-5	0.656	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6698874	2L_6698874_SNP [dm3] 2L_6698874_SNP [dm6]	A	G	8.069e^-5	0.656	INTRON Tsp
3R	11473673	3R_11473673_SNP [dm3] 3R_15647951_SNP [dm6]	C	T	8.104e^-5	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11597476	2L_11597476_SNP [dm3] 2L_11597476_SNP [dm6]	G	A	8.127e^-5	0.656	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19882143	3R_19882143_SNP [dm3] 3R_24056421_SNP [dm6]	G	A	8.135e^-5	0.656	SYNONYMOUS_CODING Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3777969	3L_3777969_SNP [dm3] 3L_3777969_SNP [dm6]	T	A	8.150e^-5	0.656	INTRON CG32264
3R	26712458	3R_26712458_SNP [dm3] 3R_30886736_SNP [dm6]	G	C	8.222e^-5	0.659	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad
2L	21071486	2L_21071486_SNP [dm3] 2L_21071486_SNP [dm6]	C	T	8.316e^-5	0.664	UTR_5_PRIME CG9265 UPSTREAM CG9265	TF binding site BDTNP1_TFBS_dl
2R	1754089	2R_1754089_SNP [dm3] 2R_5866584_SNP [dm6]	T	A	8.392e^-5	0.667	INTERGENIC
3R	19649876	3R_19649876_SNP [dm3] 3R_23824154_SNP [dm6]	G	A	8.494e^-5	0.67	INTRON CG34355
3R	25149803	3R_25149803_SNP [dm3] 3R_29324081_SNP [dm6]	A	C	8.504e^-5	0.67	INTERGENIC
3R	19725130	3R_19725130_SNP [dm3] 3R_23899408_SNP [dm6]	T	C	8.574e^-5	0.673	SYNONYMOUS_CODING sba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2592799	2L_2592799_SNP [dm3] 2L_2592799_SNP [dm6]	C	A	8.712e^-5	0.673	DOWNSTREAM CG15394 INTERGENIC
2R	7002129	2R_7002129_SNP [dm3] 2R_11114624_SNP [dm6]	A	G	8.730e^-5	0.673	INTRON luna
3R	15181482	3R_15181482_SNP [dm3] 3R_19355760_SNP [dm6]	G	A	8.757e^-5	0.673	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	13226077	2L_13226077_DEL [dm3] 2L_13226077_DEL [dm6]	AT	A	8.913e^-5	0.673	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	16700078	3R_16700078_SNP [dm3] 3R_20874356_SNP [dm6]	C	G	8.973e^-5	0.673	NON_SYNONYMOUS_CODING TotB DOWNSTREAM TotC
3R	23891272	3R_23891272_SNP [dm3] 3R_28065550_SNP [dm6]	A	C	9.026e^-5	0.673	INTRON CG34362
2L	15537538	2L_15537538_SNP [dm3] 2L_15537538_SNP [dm6]	C	G	9.045e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23857033	3R_23857033_SNP [dm3] 3R_28031311_SNP [dm6]	A	T	9.055e^-5	0.673	NON_SYNONYMOUS_CODING CG34362
3L	19686953	3L_19686953_SNP [dm3] 3L_19693853_SNP [dm6]	T	C	9.077e^-5	0.673	INTRON verm
3R	23873001	3R_23873001_SNP [dm3] 3R_28047279_SNP [dm6]	A	T	9.184e^-5	0.673	UPSTREAM CG34362 INTRON CG34362
3R	25135771	3R_25135771_SNP [dm3] 3R_29310049_SNP [dm6]	G	A	9.218e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2R	19927433	2R_19927433_SNP [dm3] 2R_24039910_SNP [dm6]	A	G	9.241e^-5	0.673	SYNONYMOUS_CODING IntS1
3R	7089450	3R_7089450_SNP [dm3] 3R_11263728_SNP [dm6]	A	G	9.257e^-5	0.673	INTERGENIC
3L	1381340	3L_1381340_SNP [dm3] 3L_1381340_SNP [dm6]	A	T	9.270e^-5	0.673	DOWNSTREAM tRNA:CR32329 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12870639	2L_12870639_SNP [dm3] 2L_12870639_SNP [dm6]	A	G	9.322e^-5	0.673	INTERGENIC
2R	6783442	2R_6783442_SNP [dm3] 2R_10895937_SNP [dm6]	C	G	9.354e^-5	0.673	INTRON CG12942	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11401537	3L_11401537_SNP [dm3] 3L_11408437_SNP [dm6]	A	G	9.395e^-5	0.673	INTERGENIC
2R	20166230	2R_20166230_SNP [dm3] 2R_24278707_SNP [dm6]	C	A	9.398e^-5	0.673	INTRON nvy	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23611400	3R_23611400_SNP [dm3] 3R_27785678_SNP [dm6]	A	G	9.430e^-5	0.673	INTRON CG34353
X	681220	X_681220_SNP [dm3] X_787187_SNP [dm6]	C	T	9.446e^-5	0.673	SYNONYMOUS_CODING tw DOWNSTREAM CG13360
3R	19543461	3R_19543461_SNP [dm3] 3R_23717739_SNP [dm6]	C	G	9.448e^-5	0.673	NON_SYNONYMOUS_CODING nau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3243794	3L_3243794_SNP [dm3] 3L_3243794_SNP [dm6]	G	A	9.453e^-5	0.673	SYNONYMOUS_CODING CG12078
3L	14762445	3L_14762445_SNP [dm3] 3L_14769345_SNP [dm6]	T	G	9.489e^-5	0.673	UTR_3_PRIME mop UPSTREAM CG17173
3R	18772866	3R_18772866_SNP [dm3] 3R_22947144_SNP [dm6]	G	A	9.511e^-5	0.673	INTRON klg	TF binding site BDTNP1_TFBS_prd
2R	17353903	2R_17353903_DEL [dm3] 2R_21466398_DEL [dm6]	GTTATAG	G	9.533e^-5	0.673	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13459044	2L_13459044_SNP [dm3] 2L_13459044_SNP [dm6]	T	A	9.539e^-5	0.673	UPSTREAM CR45684 & 1 other DOWNSTREAM CG42809 INTRON CG42784
2R	20148015	2R_20148015_SNP [dm3] 2R_24260492_SNP [dm6]	G	C	9.544e^-5	0.673	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	18918714	2L_18918714_SNP [dm3] 2L_18918714_SNP [dm6]	C	G	9.638e^-5	0.675	INTRON ssp3
3L	10144050	3L_10144050_INS [dm3] 3L_10150950_INS [dm6]	G	GCCTG	9.914e^-5	0.675	UPSTREAM CG8072 DOWNSTREAM snoRNA:MeU2-A31 INTRON dpr10
3R	16001914	3R_16001914_SNP [dm3] 3R_20176192_SNP [dm6]	C	A	9.941e^-5	0.675	INTERGENIC
3R	20433975	3R_20433975_SNP [dm3] 3R_24608253_SNP [dm6]	A	G	9.972e^-5	0.675	INTRON mld
3R	18509794	3R_18509794_SNP [dm3] 3R_22684072_SNP [dm6]	C	T	1.003e^-4	0.675	DOWNSTREAM CG45058 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6886541	2R_6886541_SNP [dm3] 2R_10999036_SNP [dm6]	G	A	1.004e^-4	0.675	INTRON luna
3R	13594184	3R_13594184_INS [dm3] 3R_17768462_INS [dm6]	A	ATCTCCA	1.005e^-4	0.675	UTR_3_PRIME CG43102
3R	18493464	3R_18493464_SNP [dm3] 3R_22667742_SNP [dm6]	T	C	1.010e^-4	0.675	INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	23797339	3R_23797339_SNP [dm3] 3R_27971617_SNP [dm6]	T	C	1.010e^-4	0.675	INTRON betaTub97EF
3R	18371094	3R_18371094_SNP [dm3] 3R_22545372_SNP [dm6]	G	T	1.022e^-4	0.675	SYNONYMOUS_CODING AdipoR
3R	23944138	3R_23944138_SNP [dm3] 3R_28118416_SNP [dm6]	G	A	1.024e^-4	0.675	INTERGENIC
X	1657881	X_1657881_INS [dm3] X_1763848_INS [dm6]	T	TGCGCATCCCT...	1.031e^-4	0.675	INTERGENIC
2R	18560763	2R_18560763_SNP [dm3] 2R_22673258_SNP [dm6]	A	G	1.032e^-4	0.675	DOWNSTREAM RYBP EXON CR44761	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	9469124	2R_9469124_SNP [dm3] 2R_13581619_SNP [dm6]	A	G	1.033e^-4	0.675	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16035770	3R_16035770_SNP [dm3] 3R_20210048_SNP [dm6]	G	T	1.038e^-4	0.675	UPSTREAM CG17199 INTRON Nlg4
3R	23943004	3R_23943004_SNP [dm3] 3R_28117282_SNP [dm6]	A	C	1.041e^-4	0.675	INTERGENIC
3R	7347766	3R_7347766_SNP [dm3] 3R_11522044_SNP [dm6]	G	A	1.044e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6631621	3L_6631621_SNP [dm3] 3L_6638521_SNP [dm6]	G	T	1.049e^-4	0.675	INTERGENIC
3R	16179453	3R_16179453_SNP [dm3] 3R_20353731_SNP [dm6]	A	C	1.058e^-4	0.675	INTERGENIC
2R	12555464	2R_12555464_SNP [dm3] 2R_16667959_SNP [dm6]	T	A	1.067e^-4	0.675	UPSTREAM Picot INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19650053	3R_19650053_SNP [dm3] 3R_23824331_SNP [dm6]	C	G	1.072e^-4	0.675	INTRON CG34355
2L	12867431	2L_12867431_SNP [dm3] 2L_12867431_SNP [dm6]	G	C	1.080e^-4	0.675	INTERGENIC
3L	4207625	3L_4207625_SNP [dm3] 3L_4207625_SNP [dm6]	T	A	1.084e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
3L	17173911	3L_17173911_SNP [dm3] 3L_17180811_SNP [dm6]	G	A	1.085e^-4	0.675	INTRON Rbp6
X	3461812	X_3461812_SNP [dm3] X_3567779_SNP [dm6]	G	T	1.086e^-4	0.675	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15963706	2R_15963706_SNP [dm3] 2R_20076201_SNP [dm6]	A	G	1.087e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14770137	2R_14770137_INS [dm3] 2R_18882632_INS [dm6]	C	CC	1.090e^-4	0.675	INTRON sano
X	3773105	X_3773105_SNP [dm3] X_3879072_SNP [dm6]	C	T	1.093e^-4	0.675	SYNONYMOUS_CODING CG2930 DOWNSTREAM CG2930	TF binding site mE1_TFBS_inv
2L	14885330	2L_14885330_SNP [dm3] 2L_14885330_SNP [dm6]	A	G	1.105e^-4	0.675	EXON CR45302
2R	17694804	2R_17694804_SNP [dm3] 2R_21807299_SNP [dm6]	T	G	1.109e^-4	0.675	INTERGENIC
2L	12865211	2L_12865211_SNP [dm3] 2L_12865211_SNP [dm6]	T	G	1.111e^-4	0.675	INTERGENIC
2L	12872226	2L_12872226_SNP [dm3] 2L_12872226_SNP [dm6]	C	G	1.115e^-4	0.675	INTERGENIC
X	1657803	X_1657803_SNP [dm3] X_1763770_SNP [dm6]	C	A	1.116e^-4	0.675	INTERGENIC
2L	6616781	2L_6616781_SNP [dm3] 2L_6616781_SNP [dm6]	A	T	1.122e^-4	0.675	UTR_3_PRIME CG11050 DOWNSTREAM CG11320
3R	16255305	3R_16255305_SNP [dm3] 3R_20429583_SNP [dm6]	C	T	1.122e^-4	0.675	INTRON Gfrl
3L	18366087	3L_18366087_SNP [dm3] 3L_18372987_SNP [dm6]	G	C	1.123e^-4	0.675	INTERGENIC
3R	15863256	3R_15863256_SNP [dm3] 3R_20037534_SNP [dm6]	T	A	1.129e^-4	0.675	UTR_3_PRIME CG17193
3R	23922428	3R_23922428_SNP [dm3] 3R_28096706_SNP [dm6]	C	T	1.131e^-4	0.675	INTERGENIC
3R	16615234	3R_16615234_SNP [dm3] 3R_20789512_SNP [dm6]	C	G	1.132e^-4	0.675	UPSTREAM Syp INTRON Syp
2L	5243872	2L_5243872_SNP [dm3] 2L_5243872_SNP [dm6]	C	A	1.133e^-4	0.675	INTRON tkv EXON CR14033
2R	7002123	2R_7002123_SNP [dm3] 2R_11114618_SNP [dm6]	G	A	1.143e^-4	0.675	INTRON luna
3R	10205431	3R_10205431_SNP [dm3] 3R_14379709_SNP [dm6]	T	C	1.145e^-4	0.675	DOWNSTREAM soti INTERGENIC
3L	15226927	3L_15226927_SNP [dm3] 3L_15233827_SNP [dm6]	T	C	1.153e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	13458157	2L_13458157_SNP [dm3] 2L_13458157_SNP [dm6]	A	C	1.153e^-4	0.675	DOWNSTREAM CR45684 & 1 other INTRON CG42784
2L	19298064	2L_19298064_SNP [dm3] 2L_19298064_SNP [dm6]	T	C	1.155e^-4	0.675	DOWNSTREAM CG17564 INTERGENIC
3R	26030571	3R_26030571_SNP [dm3] 3R_30204849_SNP [dm6]	G	C	1.163e^-4	0.675	INTERGENIC
2L	19257818	2L_19257818_SNP [dm3] 2L_19257818_SNP [dm6]	T	G	1.166e^-4	0.675	INTERGENIC
2L	10600503	2L_10600503_SNP [dm3] 2L_10600503_SNP [dm6]	G	A	1.174e^-4	0.675	INTRON Trim9
3R	16760028	3R_16760028_SNP [dm3] 3R_20934306_SNP [dm6]	A	T	1.193e^-4	0.675	INTRON CG31191
2L	12860002	2L_12860002_SNP [dm3] 2L_12860002_SNP [dm6]	G	T	1.195e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15919006	3R_15919006_SNP [dm3] 3R_20093284_SNP [dm6]	C	A	1.197e^-4	0.675	INTERGENIC
2L	20498705	2L_20498705_SNP [dm3] 2L_20498705_SNP [dm6]	T	C	1.197e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17437407	2R_17437407_SNP [dm3] 2R_21549902_SNP [dm6]	C	T	1.202e^-4	0.675	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12873607	2L_12873607_SNP [dm3] 2L_12873607_SNP [dm6]	T	A	1.209e^-4	0.675	INTERGENIC
3R	18493497	3R_18493497_SNP [dm3] 3R_22667775_SNP [dm6]	G	A	1.216e^-4	0.675	INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	16256061	3R_16256061_SNP [dm3] 3R_20430339_SNP [dm6]	G	A	1.224e^-4	0.675	INTRON Gfrl
3R	25930742	3R_25930742_INS [dm3] 3R_30105020_INS [dm6]	G	GAG	1.224e^-4	0.675	INTRON sima
3R	18492615	3R_18492615_SNP [dm3] 3R_22666893_SNP [dm6]	C	T	1.228e^-4	0.675	UTR_5_PRIME CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5233848	3L_5233848_DEL [dm3] 3L_5240748_DEL [dm6]	CC	C	1.233e^-4	0.675	INTRON shep
3L	2045200	3L_2045200_SNP [dm3] 3L_2045200_SNP [dm6]	G	A	1.233e^-4	0.675	SYNONYMOUS_CODING sls INTRON sls
3R	16561169	3R_16561169_SNP [dm3] 3R_20735447_SNP [dm6]	G	A	1.240e^-4	0.675	UPSTREAM cdc2c & 1 other DOWNSTREAM CR42786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	15831537	3R_15831537_SNP [dm3] 3R_20005815_SNP [dm6]	G	A	1.247e^-4	0.675	INTRON Hs6st	TF binding site mE1_TFBS_cad
2L	12866787	2L_12866787_SNP [dm3] 2L_12866787_SNP [dm6]	A	G	1.261e^-4	0.675	INTERGENIC
2L	4761197	2L_4761197_SNP [dm3] 2L_4761197_SNP [dm6]	C	T	1.283e^-4	0.675	INTRON CG15630
3R	17579516	3R_17579516_SNP [dm3] 3R_21753794_SNP [dm6]	C	T	1.284e^-4	0.675	UPSTREAM CG31198 DOWNSTREAM CG31233 INTERGENIC
3R	16236989	3R_16236989_DEL [dm3] 3R_20411267_DEL [dm6]	GGTAGATATTGTCCAATTTT...	ACT	1.288e^-4	0.675	INTRON Gfrl
3R	16759014	3R_16759014_SNP [dm3] 3R_20933292_SNP [dm6]	C	G	1.293e^-4	0.675	INTRON CG31191
3R	23817085	3R_23817085_SNP [dm3] 3R_27991363_SNP [dm6]	C	A	1.303e^-4	0.675	UPSTREAM CG4815 INTERGENIC
3L	19361568	3L_19361568_SNP [dm3] 3L_19368468_SNP [dm6]	G	A	1.308e^-4	0.675	INTRON CG32206
X	17572528	X_17572528_SNP [dm3] X_17678495_SNP [dm6]	G	T	1.312e^-4	0.675	INTRON chas
3R	23934047	3R_23934047_SNP [dm3] 3R_28108325_SNP [dm6]	G	A	1.316e^-4	0.675	INTERGENIC
2L	20799626	2L_20799626_SNP [dm3] 2L_20799626_SNP [dm6]	A	C	1.320e^-4	0.675	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	5615630	X_5615630_SNP [dm3] X_5721597_SNP [dm6]	T	C	1.322e^-4	0.675	UTR_3_PRIME CG32758
3R	16761363	3R_16761363_SNP [dm3] 3R_20935641_SNP [dm6]	T	G	1.323e^-4	0.675	INTRON CG31191
3L	15580390	3L_15580390_SNP [dm3] 3L_15587290_SNP [dm6]	C	T	1.327e^-4	0.675	SYNONYMOUS_CODING CG7656	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19918276	3R_19918276_SNP [dm3] 3R_24092554_SNP [dm6]	A	C	1.332e^-4	0.675	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl
2L	12839452	2L_12839452_SNP [dm3] 2L_12839452_SNP [dm6]	A	C	1.335e^-4	0.675	INTERGENIC
3L	11401477	3L_11401477_SNP [dm3] 3L_11408377_SNP [dm6]	A	T	1.347e^-4	0.675	INTERGENIC
3R	10655697	3R_10655697_SNP [dm3] 3R_14829975_SNP [dm6]	G	T	1.354e^-4	0.675	INTRON btsz
3R	18493468	3R_18493468_SNP [dm3] 3R_22667746_SNP [dm6]	A	C	1.355e^-4	0.675	INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	19968629	3R_19968629_SNP [dm3] 3R_24142907_SNP [dm6]	A	G	1.358e^-4	0.675	INTRON Kal1
3L	7461085	3L_7461085_SNP [dm3] 3L_7467985_SNP [dm6]	C	G	1.358e^-4	0.675	SYNONYMOUS_CODING Tsp66A UTR_3_PRIME CG42660 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	25135805	3R_25135805_SNP [dm3] 3R_29310083_SNP [dm6]	T	A	1.361e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	26698293	3R_26698293_SNP [dm3] 3R_30872571_SNP [dm6]	T	C	1.362e^-4	0.675	UPSTREAM CG15545 INTERGENIC
3R	14684174	3R_14684174_SNP [dm3] 3R_18858452_SNP [dm6]	G	A	1.364e^-4	0.675	INTERGENIC
2L	12858798	2L_12858798_SNP [dm3] 2L_12858798_SNP [dm6]	G	C	1.375e^-4	0.675	INTERGENIC
3L	11586483	3L_11586483_SNP [dm3] 3L_11593383_SNP [dm6]	T	A	1.376e^-4	0.675	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
3L	7974089	3L_7974089_SNP [dm3] 3L_7980989_SNP [dm6]	A	G	1.377e^-4	0.675	SPLICE_SITE_REGION nmo INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	15907262	3R_15907262_SNP [dm3] 3R_20081540_SNP [dm6]	G	A	1.389e^-4	0.675	NON_SYNONYMOUS_CODING Rh3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13941008	3R_13941008_SNP [dm3] 3R_18115286_SNP [dm6]	G	T	1.398e^-4	0.675	INTRON sr
3L	19314528	3L_19314528_SNP [dm3] 3L_19321428_SNP [dm6]	A	T	1.401e^-4	0.675	INTRON pip
2R	19934995	2R_19934995_SNP [dm3] 2R_24047472_SNP [dm6]	T	A	1.402e^-4	0.675	UTR_5_PRIME sei UPSTREAM tsr INTRON gammaSnap1	TF binding site mE1_TFBS_HSA
X	15180878	X_15180878_SNP [dm3] X_15286845_SNP [dm6]	G	A	1.405e^-4	0.675	INTERGENIC
2L	13289597	2L_13289597_SNP [dm3] 2L_13289597_SNP [dm6]	C	T	1.417e^-4	0.675	UPSTREAM CG31729 & 1 other DOWNSTREAM Uvrag INTERGENIC	TF binding site mE1_TFBS_Ubx
X	1657909	X_1657909_SNP [dm3] X_1763876_SNP [dm6]	C	T	1.423e^-4	0.675	INTERGENIC
2L	3430817	2L_3430817_SNP [dm3] 2L_3430817_SNP [dm6]	G	T	1.429e^-4	0.675	INTERGENIC
3R	16237858	3R_16237858_SNP [dm3] 3R_20412136_SNP [dm6]	G	A	1.429e^-4	0.675	INTRON Gfrl	TF binding site mE1_TFBS_chinmo
3R	26439848	3R_26439848_SNP [dm3] 3R_30614126_SNP [dm6]	C	G	1.433e^-4	0.675	DOWNSTREAM CR45571 EXON CR45571
3R	19119958	3R_19119958_SNP [dm3] 3R_23294236_SNP [dm6]	A	G	1.435e^-4	0.675	SYNONYMOUS_CODING pnt INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5217066	X_5217066_SNP [dm3] X_5323033_SNP [dm6]	A	T	1.455e^-4	0.675	UPSTREAM Rnp4F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15621529	3R_15621529_SNP [dm3] 3R_19795807_SNP [dm6]	A	C	1.459e^-4	0.675	INTRON bnl
2L	13237291	2L_13237291_SNP [dm3] 2L_13237291_SNP [dm6]	C	T	1.460e^-4	0.675	INTRON CG5867
3R	25048537	3R_25048537_SNP [dm3] 3R_29222815_SNP [dm6]	T	A	1.461e^-4	0.675	UPSTREAM Brd8 DOWNSTREAM Ef1gamma INTRON CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	13273454	2L_13273454_SNP [dm3] 2L_13273454_SNP [dm6]	A	G	1.463e^-4	0.675	INTRON CG44085
2L	15831999	2L_15831999_SNP [dm3] 2L_15831999_SNP [dm6]	T	A	1.463e^-4	0.675	INTERGENIC
2L	1268834	2L_1268834_SNP [dm3] 2L_1268834_SNP [dm6]	C	T	1.474e^-4	0.675	INTRON robo3
2L	1268891	2L_1268891_SNP [dm3] 2L_1268891_SNP [dm6]	T	A	1.474e^-4	0.675	INTRON robo3
3L	10263623	3L_10263623_SNP [dm3] 3L_10270523_SNP [dm6]	C	A	1.475e^-4	0.675	DOWNSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3R	14296544	3R_14296544_SNP [dm3] 3R_18470822_SNP [dm6]	T	C	1.480e^-4	0.675	INTRON fru
2R	10096977	2R_10096977_SNP [dm3] 2R_14209472_SNP [dm6]	C	T	1.486e^-4	0.675	INTRON Sox15	regulatory region REDfly_CRMs
3R	15863182	3R_15863182_SNP [dm3] 3R_20037460_SNP [dm6]	T	G	1.493e^-4	0.675	UTR_3_PRIME CG17193
3R	26439756	3R_26439756_SNP [dm3] 3R_30614034_SNP [dm6]	A	C	1.494e^-4	0.675	DOWNSTREAM CR45571 EXON CR45571
3R	16746356	3R_16746356_SNP [dm3] 3R_20920634_SNP [dm6]	C	T	1.496e^-4	0.675	INTRON CG31191 & 1 other
3R	17579503	3R_17579503_SNP [dm3] 3R_21753781_SNP [dm6]	T	A	1.503e^-4	0.675	UPSTREAM CG31198 DOWNSTREAM CG31233 INTERGENIC
2R	17437125	2R_17437125_INS [dm3] 2R_21549620_INS [dm6]	C	AA	1.511e^-4	0.675	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16237758	3R_16237758_SNP [dm3] 3R_20412036_SNP [dm6]	G	A	1.517e^-4	0.675	INTRON Gfrl	TF binding site mE1_TFBS_chinmo
2L	19971589	2L_19971589_SNP [dm3] 2L_19971589_SNP [dm6]	C	A	1.518e^-4	0.675	SYNONYMOUS_CODING CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20616796	3R_20616796_SNP [dm3] 3R_24791074_SNP [dm6]	T	C	1.532e^-4	0.675	UPSTREAM CG13634 INTRON Ets96B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6104826	2R_6104826_SNP [dm3] 2R_10217321_SNP [dm6]	G	T	1.532e^-4	0.675	INTRON Hr46 & 1 other
2L	13871629	2L_13871629_SNP [dm3] 2L_13871629_SNP [dm6]	C	T	1.548e^-4	0.675	INTRON CenG1A
3R	16756677	3R_16756677_SNP [dm3] 3R_20930955_SNP [dm6]	G	T	1.550e^-4	0.675	INTRON CG31191
3R	23621237	3R_23621237_SNP [dm3] 3R_27795515_SNP [dm6]	T	A	1.551e^-4	0.675	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	26698632	3R_26698632_SNP [dm3] 3R_30872910_SNP [dm6]	C	A	1.551e^-4	0.675	UPSTREAM CG15545 INTERGENIC
3L	10263604	3L_10263604_SNP [dm3] 3L_10270504_SNP [dm6]	G	A	1.552e^-4	0.675	DOWNSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2L	4265813	2L_4265813_SNP [dm3] 2L_4265813_SNP [dm6]	A	T	1.557e^-4	0.675	INTERGENIC
3L	12644449	3L_12644449_SNP [dm3] 3L_12651349_SNP [dm6]	A	C	1.563e^-4	0.675	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10166838	2L_10166838_SNP [dm3] 2L_10166838_SNP [dm6]	A	C	1.598e^-4	0.675	INTRON CG44153
2L	13258558	2L_13258558_SNP [dm3] 2L_13258558_SNP [dm6]	G	T	1.598e^-4	0.675	UTR_3_PRIME CG31851 DOWNSTREAM CG31730 & 1 other
3R	20750076	3R_20750076_SNP [dm3] 3R_24924354_SNP [dm6]	G	A	1.606e^-4	0.675	NON_SYNONYMOUS_CODING Mink SPLICE_SITE_REGION Mink UPSTREAM Trf4-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16256085	3R_16256085_SNP [dm3] 3R_20430363_SNP [dm6]	T	G	1.613e^-4	0.675	INTRON Gfrl
3R	15621849	3R_15621849_SNP [dm3] 3R_19796127_SNP [dm6]	C	A	1.617e^-4	0.675	INTRON bnl	TF binding site mE1_TFBS_cad
3R	19691050	3R_19691050_SNP [dm3] 3R_23865328_SNP [dm6]	T	A	1.618e^-4	0.675	INTRON Pli	TF binding site BDTNP1_TFBS_twi
2R	16764704	2R_16764704_DEL [dm3] 2R_20877199_DEL [dm6]	ACCAATG	A	1.625e^-4	0.675	INTRON Ipk1
3R	15915101	3R_15915101_SNP [dm3] 3R_20089379_SNP [dm6]	A	G	1.628e^-4	0.675	INTERGENIC
2L	3894310	2L_3894310_SNP [dm3] 2L_3894310_SNP [dm6]	C	A	1.631e^-4	0.675	INTRON capu
3R	19883933	3R_19883933_SNP [dm3] 3R_24058211_SNP [dm6]	T	A	1.636e^-4	0.675	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16114826	3L_16114826_SNP [dm3] 3L_16121726_SNP [dm6]	G	T	1.644e^-4	0.675	UPSTREAM CG12272 DOWNSTREAM Taf4 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22621105	3R_22621105_SNP [dm3] 3R_26795383_SNP [dm6]	C	T	1.654e^-4	0.675	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13044569	2L_13044569_SNP [dm3] 2L_13044569_SNP [dm6]	A	C	1.655e^-4	0.675	INTRON CG9932
2L	13044589	2L_13044589_INS [dm3] 2L_13044589_INS [dm6]	T	TC	1.655e^-4	0.675	INTRON CG9932
3L	12337051	3L_12337051_SNP [dm3] 3L_12343951_SNP [dm6]	A	G	1.655e^-4	0.675	INTRON CrzR
3R	23930091	3R_23930091_SNP [dm3] 3R_28104369_SNP [dm6]	A	T	1.656e^-4	0.675	INTERGENIC
2L	11855279	2L_11855279_SNP [dm3] 2L_11855279_SNP [dm6]	T	A	1.662e^-4	0.675	INTRON Pde1c
2L	3649815	2L_3649815_SNP [dm3] 2L_3649815_SNP [dm6]	T	C	1.664e^-4	0.675	INTRON for
3R	21680778	3R_21680778_SNP [dm3] 3R_25855056_SNP [dm6]	T	G	1.673e^-4	0.675	INTERGENIC
3R	22621113	3R_22621113_SNP [dm3] 3R_26795391_SNP [dm6]	A	T	1.674e^-4	0.675	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12337097	3L_12337097_SNP [dm3] 3L_12343997_SNP [dm6]	C	T	1.677e^-4	0.675	INTRON CrzR
X	14558591	X_14558591_DEL [dm3] X_14664558_DEL [dm6]	AC	T	1.678e^-4	0.675	INTERGENIC
3L	9203194	3L_9203194_SNP [dm3] 3L_9210094_SNP [dm6]	T	A	1.679e^-4	0.675	INTERGENIC
3L	12623739	3L_12623739_SNP [dm3] 3L_12630639_SNP [dm6]	C	T	1.683e^-4	0.675	INTRON CR32111
3R	16767691	3R_16767691_SNP [dm3] 3R_20941969_SNP [dm6]	T	C	1.687e^-4	0.675	INTRON CG31191
2R	19927385	2R_19927385_SNP [dm3] 2R_24039862_SNP [dm6]	C	A	1.689e^-4	0.675	SYNONYMOUS_CODING IntS1
X	6431243	X_6431243_SNP [dm3] X_6537210_SNP [dm6]	A	C	1.693e^-4	0.675	SYNONYMOUS_CODING dx
2R	20175089	2R_20175089_SNP [dm3] 2R_24287566_SNP [dm6]	T	A	1.694e^-4	0.675	INTRON nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	720369	3L_720369_SNP [dm3] 3L_720369_SNP [dm6]	G	A	1.700e^-4	0.675	INTERGENIC
2R	20175669	2R_20175669_SNP [dm3] 2R_24288146_SNP [dm6]	C	G	1.709e^-4	0.675	SYNONYMOUS_CODING nvy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15551665	3R_15551665_SNP [dm3] 3R_19725943_SNP [dm6]	T	C	1.710e^-4	0.675	INTERGENIC
3R	26698638	3R_26698638_DEL [dm3] 3R_30872916_DEL [dm6]	CGAAAA	T	1.712e^-4	0.675	UPSTREAM CG15545 INTERGENIC
2L	16936055	2L_16936055_SNP [dm3] 2L_16936055_SNP [dm6]	A	G	1.713e^-4	0.675	INTERGENIC
3R	4119381	3R_4119381_SNP [dm3] 3R_8293659_SNP [dm6]	T	G	1.714e^-4	0.675	DOWNSTREAM CG9626 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	14770128	2R_14770128_SNP [dm3] 2R_18882623_SNP [dm6]	A	C	1.717e^-4	0.675	INTRON sano
2L	12866966	2L_12866966_SNP [dm3] 2L_12866966_SNP [dm6]	G	C	1.718e^-4	0.675	INTERGENIC
3R	23872990	3R_23872990_SNP [dm3] 3R_28047268_SNP [dm6]	T	C	1.729e^-4	0.675	UPSTREAM CG34362 INTRON CG34362
3R	23872991	3R_23872991_SNP [dm3] 3R_28047269_SNP [dm6]	T	G	1.729e^-4	0.675	UPSTREAM CG34362 INTRON CG34362
2L	20900641	2L_20900641_SNP [dm3] 2L_20900641_SNP [dm6]	G	A	1.736e^-4	0.675	UPSTREAM CR33317 INTRON sky & 1 other
2L	20926406	2L_20926406_SNP [dm3] 2L_20926406_SNP [dm6]	T	C	1.736e^-4	0.675	UTR_3_PRIME CG9272 UPSTREAM RPA2	TF binding site BDTNP1_TFBS_Med
2R	13806881	2R_13806881_SNP [dm3] 2R_17919376_SNP [dm6]	A	T	1.743e^-4	0.675	INTRON Elk
3R	10652567	3R_10652567_SNP [dm3] 3R_14826845_SNP [dm6]	A	G	1.748e^-4	0.675	SYNONYMOUS_CODING btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20163755	2R_20163755_SNP [dm3] 2R_24276232_SNP [dm6]	T	A	1.749e^-4	0.675	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11258886	3R_11258886_SNP [dm3] 3R_15433164_SNP [dm6]	A	T	1.750e^-4	0.675	INTRON CG6118
3R	20616658	3R_20616658_SNP [dm3] 3R_24790936_SNP [dm6]	A	T	1.755e^-4	0.675	UPSTREAM CG13634 INTRON Ets96B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16936061	2L_16936061_SNP [dm3] 2L_16936061_SNP [dm6]	A	T	1.763e^-4	0.675	INTERGENIC
3R	18492461	3R_18492461_SNP [dm3] 3R_22666739_SNP [dm6]	A	T	1.766e^-4	0.675	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11597736	2L_11597736_SNP [dm3] 2L_11597736_SNP [dm6]	C	G	1.773e^-4	0.675	INTRON kek2
2L	11597739	2L_11597739_SNP [dm3] 2L_11597739_SNP [dm6]	C	G	1.773e^-4	0.675	INTRON kek2
3L	10381175	3L_10381175_DEL [dm3] 3L_10388075_DEL [dm6]	GTTGCACATG	G	1.779e^-4	0.675	DOWNSTREAM CR45245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23621123	3R_23621123_SNP [dm3] 3R_27795401_SNP [dm6]	G	A	1.786e^-4	0.675	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	6176279	3L_6176279_SNP [dm3] 3L_6183179_SNP [dm6]	C	T	1.788e^-4	0.675	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	746337	X_746337_SNP [dm3] X_852304_SNP [dm6]	C	A	1.790e^-4	0.675	INTRON CG43867
X	2563606	X_2563606_SNP [dm3] X_2669573_SNP [dm6]	G	A	1.793e^-4	0.675	INTRON sgg
3R	19119973	3R_19119973_SNP [dm3] 3R_23294251_SNP [dm6]	C	T	1.804e^-4	0.675	SYNONYMOUS_CODING pnt INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	16558830	3R_16558830_SNP [dm3] 3R_20733108_SNP [dm6]	C	A	1.813e^-4	0.675	DOWNSTREAM CG31205 INTERGENIC
2R	19118996	2R_19118996_INS [dm3] 2R_23231473_INS [dm6]	C	CC	1.824e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	19130023	2R_19130023_SNP [dm3] 2R_23242500_SNP [dm6]	T	C	1.828e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	713622	X_713622_SNP [dm3] X_819589_SNP [dm6]	G	T	1.830e^-4	0.675	SYNONYMOUS_CODING CG43867
3R	16561478	3R_16561478_SNP [dm3] 3R_20735756_SNP [dm6]	T	A	1.834e^-4	0.675	SYNONYMOUS_CODING cdc2c UPSTREAM mir-995 DOWNSTREAM CR42786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	12644448	3L_12644448_SNP [dm3] 3L_12651348_SNP [dm6]	G	A	1.838e^-4	0.675	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16241646	2L_16241646_SNP [dm3] 2L_16241646_SNP [dm6]	A	C	1.841e^-4	0.675	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
2L	12875249	2L_12875249_SNP [dm3] 2L_12875249_SNP [dm6]	G	C	1.843e^-4	0.675	INTERGENIC
3L	9203198	3L_9203198_SNP [dm3] 3L_9210098_SNP [dm6]	C	G	1.844e^-4	0.675	INTERGENIC
2R	5317077	2R_5317077_DEL [dm3] 2R_9429572_DEL [dm6]	AA	A	1.846e^-4	0.675	INTRON Pdk
2R	20144707	2R_20144707_SNP [dm3] 2R_24257184_SNP [dm6]	G	C	1.847e^-4	0.675	UTR_3_PRIME CG13575 UPSTREAM CG3376	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	13226152	2L_13226152_SNP [dm3] 2L_13226152_SNP [dm6]	A	G	1.851e^-4	0.675	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14589379	2R_14589379_SNP [dm3] 2R_18701874_SNP [dm6]	C	A	1.852e^-4	0.675	DOWNSTREAM Sik3 INTRON Sik3
3R	11151583	3R_11151583_SNP [dm3] 3R_15325861_SNP [dm6]	A	G	1.853e^-4	0.675	DOWNSTREAM ear INTRON CG6236
2L	4318383	2L_4318383_SNP [dm3] 2L_4318383_SNP [dm6]	C	T	1.856e^-4	0.675	INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13226158	2L_13226158_SNP [dm3] 2L_13226158_SNP [dm6]	A	C	1.858e^-4	0.675	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3858717	2R_3858717_DEL [dm3] 2R_7971212_DEL [dm6]	GG	C	1.865e^-4	0.675	UPSTREAM CSN4 INTRON CG8726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11597520	2L_11597520_SNP [dm3] 2L_11597520_SNP [dm6]	T	A	1.871e^-4	0.675	INTRON kek2	TF binding site mE1_TFBS_inv
2L	13458271	2L_13458271_SNP [dm3] 2L_13458271_SNP [dm6]	A	T	1.875e^-4	0.675	DOWNSTREAM CR45684 & 1 other INTRON CG42784
2L	12866605	2L_12866605_SNP [dm3] 2L_12866605_SNP [dm6]	A	C	1.879e^-4	0.675	INTERGENIC
3R	26198202	3R_26198202_SNP [dm3] 3R_30372480_SNP [dm6]	A	G	1.882e^-4	0.675	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26698656	3R_26698656_SNP [dm3] 3R_30872934_SNP [dm6]	T	A	1.884e^-4	0.675	UPSTREAM CG15545 INTERGENIC
2R	4470593	2R_4470593_SNP [dm3] 2R_8583088_SNP [dm6]	C	T	1.887e^-4	0.675	INTRON CG42326
3R	11258882	3R_11258882_SNP [dm3] 3R_15433160_SNP [dm6]	T	G	1.889e^-4	0.675	INTRON CG6118
2L	20802419	2L_20802419_SNP [dm3] 2L_20802419_SNP [dm6]	C	T	1.895e^-4	0.675	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1422461	X_1422461_SNP [dm3] X_1528428_SNP [dm6]	A	G	1.897e^-4	0.675	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	3241585	3L_3241585_SNP [dm3] 3L_3241585_SNP [dm6]	C	A	1.904e^-4	0.675	INTERGENIC
3R	15909220	3R_15909220_SNP [dm3] 3R_20083498_SNP [dm6]	G	C	1.919e^-4	0.675	INTERGENIC
3R	7124579	3R_7124579_SNP [dm3] 3R_11298857_SNP [dm6]	C	G	1.923e^-4	0.675	INTRON CR31386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14238004	2R_14238004_SNP [dm3] 2R_18350499_SNP [dm6]	T	A	1.924e^-4	0.675	INTRON sbb
2L	6524648	2L_6524648_SNP [dm3] 2L_6524648_SNP [dm6]	T	A	1.925e^-4	0.675	INTRON CG31637
3L	10185831	3L_10185831_SNP [dm3] 3L_10192731_SNP [dm6]	C	T	1.926e^-4	0.675	DOWNSTREAM ect INTRON ect
3R	16881477	3R_16881477_SNP [dm3] 3R_21055755_SNP [dm6]	T	A	1.928e^-4	0.675	INTRON Mvl
3L	3241840	3L_3241840_SNP [dm3] 3L_3241840_SNP [dm6]	A	T	1.930e^-4	0.675	INTERGENIC
3R	23872137	3R_23872137_SNP [dm3] 3R_28046415_SNP [dm6]	G	A	1.937e^-4	0.675	INTRON CG34362
2L	13044570	2L_13044570_DEL [dm3] 2L_13044570_DEL [dm6]	ATAACATCGA	A	1.940e^-4	0.675	INTRON CG9932
X	19357901	X_19357901_SNP [dm3] X_19463868_SNP [dm6]	T	A	1.941e^-4	0.675	INTRON kek5
2L	19241679	2L_19241679_SNP [dm3] 2L_19241679_SNP [dm6]	G	A	1.950e^-4	0.675	INTERGENIC
3R	16625716	3R_16625716_SNP [dm3] 3R_20799994_SNP [dm6]	G	A	1.952e^-4	0.675	INTRON Syp
2L	11597742	2L_11597742_INS [dm3] 2L_11597742_INS [dm6]	A	CTTCCCAGTC	1.953e^-4	0.675	INTRON kek2
2L	15635340	2L_15635340_SNP [dm3] 2L_15635340_SNP [dm6]	T	G	1.955e^-4	0.675	DOWNSTREAM CG18480 INTERGENIC
3R	26818853	3R_26818853_SNP [dm3] 3R_30993131_SNP [dm6]	G	T	1.956e^-4	0.675	UPSTREAM CG31007 INTRON 5-HT7
2R	15781591	2R_15781591_SNP [dm3] 2R_19894086_SNP [dm6]	A	C	1.958e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17128138	2L_17128138_SNP [dm3] 2L_17128138_SNP [dm6]	G	A	1.960e^-4	0.675	INTERGENIC
2L	20907275	2L_20907275_SNP [dm3] 2L_20907275_SNP [dm6]	G	A	1.961e^-4	0.675	INTRON sky & 1 other
2L	13458894	2L_13458894_SNP [dm3] 2L_13458894_SNP [dm6]	T	A	1.963e^-4	0.675	UPSTREAM CR45684 & 1 other DOWNSTREAM CG42809 INTRON CG42784
3L	9329342	3L_9329342_SNP [dm3] 3L_9336242_SNP [dm6]	T	C	1.970e^-4	0.675	UTR_5_PRIME PGRP-LA INTRON PGRP-LA
3L	9329343	3L_9329343_SNP [dm3] 3L_9336243_SNP [dm6]	T	G	1.970e^-4	0.675	UTR_5_PRIME PGRP-LA INTRON PGRP-LA
3L	13341084	3L_13341084_SNP [dm3] 3L_13347984_SNP [dm6]	T	C	1.979e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2923536	2R_2923536_SNP [dm3] 2R_7036031_SNP [dm6]	C	T	1.982e^-4	0.675	DOWNSTREAM CG33914 INTRON Tsp42Ei
2L	21872785	2L_21872785_INS [dm3] 2L_21872785_INS [dm6]	T	TCA	1.983e^-4	0.675	INTERGENIC	transposable element FlyBase
2L	1268854	2L_1268854_SNP [dm3] 2L_1268854_SNP [dm6]	C	A	1.991e^-4	0.675	INTRON robo3
2L	3172315	2L_3172315_SNP [dm3] 2L_3172315_SNP [dm6]	A	G	1.994e^-4	0.675	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	16254650	3R_16254650_SNP [dm3] 3R_20428928_SNP [dm6]	G	C	2.004e^-4	0.675	INTRON Gfrl
3L	521730	3L_521730_SNP [dm3] 3L_521730_SNP [dm6]	T	C	2.014e^-4	0.675	INTRON klar
3L	19361494	3L_19361494_SNP [dm3] 3L_19368394_SNP [dm6]	T	C	2.015e^-4	0.675	INTRON CG32206
3L	20142410	3L_20142410_SNP [dm3] 3L_20149310_SNP [dm6]	A	T	2.017e^-4	0.675	DOWNSTREAM CG42674 INTERGENIC
3R	20017660	3R_20017660_SNP [dm3] 3R_24191938_SNP [dm6]	C	T	2.017e^-4	0.675	NON_SYNONYMOUS_CODING jnj
3L	20056832	3L_20056832_SNP [dm3] 3L_20063732_SNP [dm6]	G	A	2.020e^-4	0.675	INTRON sNPF-R
2L	12865350	2L_12865350_SNP [dm3] 2L_12865350_SNP [dm6]	T	C	2.020e^-4	0.675	INTERGENIC
3R	16560891	3R_16560891_SNP [dm3] 3R_20735169_SNP [dm6]	G	T	2.024e^-4	0.675	UPSTREAM cdc2c & 1 other EXON CR42786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	9611124	2R_9611124_SNP [dm3] 2R_13723619_SNP [dm6]	T	C	2.025e^-4	0.675	INTRON fas
X	4401604	X_4401604_SNP [dm3] X_4507571_SNP [dm6]	T	A	2.029e^-4	0.675	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4207628	3L_4207628_DEL [dm3] 3L_4207628_DEL [dm6]	TCAAGCAATAGCTT...	T	2.030e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
3R	16561100	3R_16561100_SNP [dm3] 3R_20735378_SNP [dm6]	T	G	2.032e^-4	0.675	UPSTREAM cdc2c & 1 other DOWNSTREAM CR42786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21884494	2L_21884494_SNP [dm3] 2L_21884494_SNP [dm6]	A	T	2.036e^-4	0.675	INTERGENIC
X	2002292	X_2002292_SNP [dm3] X_2108259_SNP [dm6]	A	G	2.036e^-4	0.675	UTR_5_PRIME csw INTRON csw
3R	21433726	3R_21433726_SNP [dm3] 3R_25608004_SNP [dm6]	A	G	2.037e^-4	0.675	UTR_3_PRIME msi INTRON ymp
3R	15149999	3R_15149999_SNP [dm3] 3R_19324277_SNP [dm6]	A	G	2.042e^-4	0.675	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23841138	3R_23841138_SNP [dm3] 3R_28015416_SNP [dm6]	C	A	2.051e^-4	0.675	INTERGENIC
3R	23858530	3R_23858530_SNP [dm3] 3R_28032808_SNP [dm6]	C	T	2.051e^-4	0.675	INTRON CG34362
3R	23858536	3R_23858536_SNP [dm3] 3R_28032814_SNP [dm6]	T	C	2.051e^-4	0.675	INTRON CG34362
3R	23869055	3R_23869055_SNP [dm3] 3R_28043333_SNP [dm6]	G	T	2.051e^-4	0.675	INTRON CG34362
3R	23879199	3R_23879199_SNP [dm3] 3R_28053477_SNP [dm6]	C	G	2.051e^-4	0.675	INTRON CG34362
3R	23893235	3R_23893235_SNP [dm3] 3R_28067513_SNP [dm6]	C	G	2.051e^-4	0.675	INTRON CG34362
3R	21680811	3R_21680811_SNP [dm3] 3R_25855089_SNP [dm6]	A	C	2.061e^-4	0.675	INTERGENIC
3R	23858545	3R_23858545_SNP [dm3] 3R_28032823_SNP [dm6]	C	T	2.066e^-4	0.675	INTRON CG34362
X	16298508	X_16298508_SNP [dm3] X_16404475_SNP [dm6]	A	C	2.071e^-4	0.675	UPSTREAM CG9981 INTRON CG9981	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14576331	2L_14576331_SNP [dm3] 2L_14576331_SNP [dm6]	T	G	2.075e^-4	0.675	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15831584	3R_15831584_SNP [dm3] 3R_20005862_SNP [dm6]	A	G	2.077e^-4	0.675	INTRON Hs6st	TF binding site mE1_TFBS_cad
X	16298520	X_16298520_SNP [dm3] X_16404487_SNP [dm6]	G	C	2.084e^-4	0.675	UPSTREAM CG9981 INTRON CG9981	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11618828	X_11618828_SNP [dm3] X_11724795_SNP [dm6]	A	G	2.086e^-4	0.675	UTR_3_PRIME inaF-D & 1 other DOWNSTREAM Tango10 INTRON CG15221
3R	16256069	3R_16256069_SNP [dm3] 3R_20430347_SNP [dm6]	G	A	2.086e^-4	0.675	INTRON Gfrl
3R	13583965	3R_13583965_SNP [dm3] 3R_17758243_SNP [dm6]	C	G	2.089e^-4	0.675	INTRON TyrR
X	6204650	X_6204650_SNP [dm3] X_6310617_SNP [dm6]	C	G	2.089e^-4	0.675	INTRON CG15894	TF binding site mE1_TFBS_Trl
3R	8327874	3R_8327874_SNP [dm3] 3R_12502152_SNP [dm6]	C	T	2.089e^-4	0.675	UPSTREAM Hsp70Bbb INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Trl
3L	2044737	3L_2044737_SNP [dm3] 3L_2044737_SNP [dm6]	G	A	2.089e^-4	0.675	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2676731	X_2676731_SNP [dm3] X_2782698_SNP [dm6]	G	A	2.091e^-4	0.675	DOWNSTREAM CG32795 INTRON kirre	TF binding site mE1_TFBS_chinmo
2L	13229695	2L_13229695_SNP [dm3] 2L_13229695_SNP [dm6]	G	T	2.096e^-4	0.675	UPSTREAM CG16815 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	17950751	3R_17950751_SNP [dm3] 3R_22125029_SNP [dm6]	C	T	2.097e^-4	0.675	NON_SYNONYMOUS_CODING CG42390	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13044199	2L_13044199_SNP [dm3] 2L_13044199_SNP [dm6]	G	A	2.097e^-4	0.675	INTRON CG9932
3R	23792476	3R_23792476_SNP [dm3] 3R_27966754_SNP [dm6]	G	A	2.099e^-4	0.675	SYNONYMOUS_CODING CG4849 DOWNSTREAM betaTub97EF
X	5738101	X_5738101_SNP [dm3] X_5844068_SNP [dm6]	G	A	2.100e^-4	0.675	INTERGENIC
3R	22626967	3R_22626967_SNP [dm3] 3R_26801245_SNP [dm6]	G	T	2.107e^-4	0.675	INTRON Tl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	1402345	2R_1402345_SNP [dm3] 2R_5514840_SNP [dm6]	A	G	2.108e^-4	0.675	INTRON CG30438
3L	14690478	3L_14690478_SNP [dm3] 3L_14697378_SNP [dm6]	T	C	2.112e^-4	0.675	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
X	12824561	X_12824561_SNP [dm3] X_12930528_SNP [dm6]	T	C	2.117e^-4	0.675	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10652657	3R_10652657_SNP [dm3] 3R_14826935_SNP [dm6]	T	C	2.120e^-4	0.675	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16392785	3R_16392785_SNP [dm3] 3R_20567063_SNP [dm6]	G	A	2.121e^-4	0.675	INTRON CG5191
3R	16392786	3R_16392786_SNP [dm3] 3R_20567064_SNP [dm6]	C	A	2.121e^-4	0.675	INTRON CG5191
X	1564004	X_1564004_SNP [dm3] X_1669971_SNP [dm6]	A	G	2.122e^-4	0.675	UPSTREAM CG3740 INTRON hfw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9183539	2R_9183539_SNP [dm3] 2R_13296034_SNP [dm6]	C	T	2.126e^-4	0.675	UPSTREAM Dh31-R INTERGENIC
2L	5901787	2L_5901787_SNP [dm3] 2L_5901787_SNP [dm6]	A	T	2.136e^-4	0.675	INTERGENIC
2R	14673009	2R_14673009_SNP [dm3] 2R_18785504_SNP [dm6]	G	A	2.146e^-4	0.675	INTRON CG15080	enhancer mE1_CBP_Enhancers
3R	7107247	3R_7107247_SNP [dm3] 3R_11281525_SNP [dm6]	C	A	2.148e^-4	0.675	INTRON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18104895	2R_18104895_SNP [dm3] 2R_22217390_SNP [dm6]	G	T	2.153e^-4	0.675	UTR_3_PRIME CG30278 DOWNSTREAM CG30278 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA
2L	2563949	2L_2563949_SNP [dm3] 2L_2563949_SNP [dm6]	G	T	2.154e^-4	0.675	SYNONYMOUS_CODING Cyp309a1 DOWNSTREAM Cyp309a2
2R	20146108	2R_20146108_SNP [dm3] 2R_24258585_SNP [dm6]	C	T	2.161e^-4	0.675	INTRON CG3376
3L	2669599	3L_2669599_SNP [dm3] 3L_2669599_SNP [dm6]	G	A	2.161e^-4	0.675	INTRON Fife
3R	23875480	3R_23875480_SNP [dm3] 3R_28049758_SNP [dm6]	C	T	2.165e^-4	0.675	UTR_5_PRIME CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	23858670	3R_23858670_SNP [dm3] 3R_28032948_SNP [dm6]	G	T	2.172e^-4	0.675	INTRON CG34362
3R	15863672	3R_15863672_SNP [dm3] 3R_20037950_SNP [dm6]	A	T	2.176e^-4	0.675	UTR_3_PRIME CG17193
3R	15863710	3R_15863710_SNP [dm3] 3R_20037988_SNP [dm6]	G	A	2.176e^-4	0.675	UTR_3_PRIME CG17193
3R	15863711	3R_15863711_SNP [dm3] 3R_20037989_SNP [dm6]	A	G	2.176e^-4	0.675	UTR_3_PRIME CG17193
3R	15863726	3R_15863726_SNP [dm3] 3R_20038004_SNP [dm6]	C	T	2.176e^-4	0.675	UTR_3_PRIME CG17193
2L	16181135	2L_16181135_SNP [dm3] 2L_16181135_SNP [dm6]	G	A	2.182e^-4	0.675	INTRON Ca-alpha1D
3L	11549931	3L_11549931_INS [dm3] 3L_11556831_INS [dm6]	A	AATGGCTCTTTTTGA...	2.182e^-4	0.675	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	23657721	3R_23657721_SNP [dm3] 3R_27831999_SNP [dm6]	T	G	2.188e^-4	0.675	INTRON CG34353
3R	14704831	3R_14704831_SNP [dm3] 3R_18879109_SNP [dm6]	T	C	2.191e^-4	0.675	INTERGENIC
2R	9613233	2R_9613233_SNP [dm3] 2R_13725728_SNP [dm6]	A	C	2.195e^-4	0.675	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16015318	3R_16015318_SNP [dm3] 3R_20189596_SNP [dm6]	G	A	2.198e^-4	0.675	INTERGENIC
2L	7603668	2L_7603668_SNP [dm3] 2L_7603668_SNP [dm6]	T	C	2.205e^-4	0.675	UPSTREAM CR45370 INTERGENIC
3R	15621363	3R_15621363_SNP [dm3] 3R_19795641_SNP [dm6]	G	A	2.206e^-4	0.675	INTRON bnl
3R	20616819	3R_20616819_SNP [dm3] 3R_24791097_SNP [dm6]	T	C	2.208e^-4	0.675	UPSTREAM CG13634 INTRON Ets96B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1751093	2R_1751093_MNP [dm3] 2R_5863588_MNP [dm6]	TAT	CCA	2.209e^-4	0.675	INTERGENIC
3R	17401225	3R_17401225_SNP [dm3] 3R_21575503_SNP [dm6]	G	A	2.221e^-4	0.675	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15233265	3R_15233265_SNP [dm3] 3R_19407543_SNP [dm6]	A	G	2.225e^-4	0.675	INTERGENIC
3R	24141215	3R_24141215_SNP [dm3] 3R_28315493_SNP [dm6]	C	T	2.226e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7693355	3L_7693355_SNP [dm3] 3L_7700255_SNP [dm6]	A	T	2.227e^-4	0.675	SYNONYMOUS_CODING Ank2 INTRON CG32373
3L	11548338	3L_11548338_SNP [dm3] 3L_11555238_SNP [dm6]	T	C	2.232e^-4	0.675	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18551752	2R_18551752_SNP [dm3] 2R_22664247_SNP [dm6]	T	C	2.236e^-4	0.675	SYNONYMOUS_CODING CG4250
2R	14993117	2R_14993117_DEL [dm3] 2R_19105612_DEL [dm6]	AA	A	2.240e^-4	0.675	INTRON 5-HT1A
2L	19240785	2L_19240785_INS [dm3] 2L_19240785_INS [dm6]	C	CCCACACACTTTCACAC...	2.242e^-4	0.675	INTERGENIC
2L	16241698	2L_16241698_DEL [dm3] 2L_16241698_DEL [dm6]	AAAAAGTTTTCGA...	A	2.244e^-4	0.675	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
2R	4470566	2R_4470566_SNP [dm3] 2R_8583061_SNP [dm6]	T	C	2.245e^-4	0.675	INTRON CG42326
3R	10801332	3R_10801332_SNP [dm3] 3R_14975610_SNP [dm6]	A	T	2.249e^-4	0.675	INTERGENIC
3L	4207606	3L_4207606_SNP [dm3] 3L_4207606_SNP [dm6]	G	T	2.263e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
X	7627130	X_7627130_SNP [dm3] X_7733097_SNP [dm6]	T	C	2.270e^-4	0.675	SYNONYMOUS_CODING Pdp
2R	19059743	2R_19059743_SNP [dm3] 2R_23172220_SNP [dm6]	C	A	2.271e^-4	0.675	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17173663	3L_17173663_SNP [dm3] 3L_17180563_SNP [dm6]	T	A	2.275e^-4	0.675	INTRON Rbp6
X	16631011	X_16631011_SNP [dm3] X_16736978_SNP [dm6]	C	A	2.276e^-4	0.675	DOWNSTREAM TwdlY INTRON CG9634
2R	12156253	2R_12156253_SNP [dm3] 2R_16268748_SNP [dm6]	C	T	2.278e^-4	0.675	SYNONYMOUS_CODING Khc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20810643	2L_20810643_SNP [dm3] 2L_20810643_SNP [dm6]	A	T	2.293e^-4	0.675	INTRON CG9328
2L	9079134	2L_9079134_SNP [dm3] 2L_9079134_SNP [dm6]	C	T	2.303e^-4	0.675	INTERGENIC
3L	16515214	3L_16515214_SNP [dm3] 3L_16522114_SNP [dm6]	C	T	2.315e^-4	0.675	INTRON CG43373
2L	11597890	2L_11597890_SNP [dm3] 2L_11597890_SNP [dm6]	A	G	2.316e^-4	0.675	INTRON kek2
2L	4135073	2L_4135073_SNP [dm3] 2L_4135073_SNP [dm6]	T	C	2.323e^-4	0.675	INTERGENIC
3R	18006845	3R_18006845_SNP [dm3] 3R_22181123_SNP [dm6]	C	T	2.324e^-4	0.675	INTRON SKIP
3L	2027291	3L_2027291_SNP [dm3] 3L_2027291_SNP [dm6]	C	T	2.326e^-4	0.675	SYNONYMOUS_CODING CG34259
X	3461796	X_3461796_INS [dm3] X_3567763_INS [dm6]	T	TCT	2.334e^-4	0.675	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	13458884	2L_13458884_SNP [dm3] 2L_13458884_SNP [dm6]	A	C	2.336e^-4	0.675	UPSTREAM CR45684 & 1 other DOWNSTREAM CG42809 INTRON CG42784
2L	10095103	2L_10095103_SNP [dm3] 2L_10095103_SNP [dm6]	T	A	2.339e^-4	0.675	INTRON CG44153 & 1 other
3R	20380747	3R_20380747_SNP [dm3] 3R_24555025_SNP [dm6]	C	T	2.340e^-4	0.675	SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23228975	3R_23228975_SNP [dm3] 3R_27403253_SNP [dm6]	A	T	2.349e^-4	0.675	INTRON side
3L	3777984	3L_3777984_SNP [dm3] 3L_3777984_SNP [dm6]	T	C	2.352e^-4	0.675	INTRON CG32264
2R	19064065	2R_19064065_SNP [dm3] 2R_23176542_SNP [dm6]	C	G	2.358e^-4	0.675	INTRON CG34371
3R	16255933	3R_16255933_SNP [dm3] 3R_20430211_SNP [dm6]	T	G	2.361e^-4	0.675	INTRON Gfrl
2L	14576262	2L_14576262_SNP [dm3] 2L_14576262_SNP [dm6]	G	A	2.374e^-4	0.675	UPSTREAM CR44856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1315922	2L_1315922_SNP [dm3] 2L_1315922_SNP [dm6]	T	G	2.376e^-4	0.675	INTERGENIC
3R	16876022	3R_16876022_SNP [dm3] 3R_21050300_SNP [dm6]	G	T	2.386e^-4	0.675	INTRON CG17279
2R	603022	2R_603022_SNP [dm3] 2R_4715517_SNP [dm6]	G	T	2.387e^-4	0.675	INTRON Nipped-B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	24757093	3R_24757093_SNP [dm3] 3R_28931371_SNP [dm6]	C	T	2.391e^-4	0.675	INTRON CG14521
3R	16665385	3R_16665385_SNP [dm3] 3R_20839663_SNP [dm6]	A	G	2.392e^-4	0.675	UTR_3_PRIME Synd
2R	15781503	2R_15781503_SNP [dm3] 2R_19893998_SNP [dm6]	T	C	2.400e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6990912	3L_6990912_DEL [dm3] 3L_6997812_DEL [dm6]	ATTTATTTATA...	A	2.401e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16186915	3R_16186915_SNP [dm3] 3R_20361193_SNP [dm6]	G	A	2.402e^-4	0.675	DOWNSTREAM CR45023 & 1 other INTERGENIC
3R	15233259	3R_15233259_INS [dm3] 3R_19407537_INS [dm6]	A	TGATCC	2.402e^-4	0.675	INTERGENIC
2L	13274132	2L_13274132_SNP [dm3] 2L_13274132_SNP [dm6]	G	T	2.403e^-4	0.675	INTRON CG44085
2L	20802369	2L_20802369_SNP [dm3] 2L_20802369_SNP [dm6]	A	G	2.406e^-4	0.675	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13459167	2L_13459167_SNP [dm3] 2L_13459167_SNP [dm6]	C	G	2.410e^-4	0.675	UPSTREAM CR45684 & 1 other INTRON CG42784
3L	1083629	3L_1083629_SNP [dm3] 3L_1083629_SNP [dm6]	A	G	2.411e^-4	0.675	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26342926	3R_26342926_DEL [dm3] 3R_30517204_DEL [dm6]	CGCCCACCGCCCCTTCTAAG...	A	2.420e^-4	0.675	UTR_3_PRIME jdp DOWNSTREAM CG9698
3R	22635953	3R_22635953_SNP [dm3] 3R_26810231_SNP [dm6]	A	T	2.422e^-4	0.675	INTRON Tl
3L	3777582	3L_3777582_SNP [dm3] 3L_3777582_SNP [dm6]	T	C	2.438e^-4	0.675	INTRON CG32264
3R	18006841	3R_18006841_SNP [dm3] 3R_22181119_SNP [dm6]	T	C	2.440e^-4	0.675	INTRON SKIP
3L	16115143	3L_16115143_SNP [dm3] 3L_16122043_SNP [dm6]	A	T	2.441e^-4	0.675	START_GAINED CG12272 UTR_5_PRIME CG12272 DOWNSTREAM Taf4	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
2R	7828847	2R_7828847_SNP [dm3] 2R_11941342_SNP [dm6]	C	A	2.447e^-4	0.675	INTRON CG13188
3L	9908422	3L_9908422_SNP [dm3] 3L_9915322_SNP [dm6]	T	G	2.463e^-4	0.675	INTRON CG34356
3L	9908435	3L_9908435_SNP [dm3] 3L_9915335_SNP [dm6]	A	G	2.463e^-4	0.675	INTRON CG34356
3L	9147439	3L_9147439_SNP [dm3] 3L_9154339_SNP [dm6]	G	T	2.465e^-4	0.675	INTRON Rdl
X	6428736	X_6428736_SNP [dm3] X_6534703_SNP [dm6]	A	C	2.475e^-4	0.675	SYNONYMOUS_CODING dx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21763944	2L_21763944_SNP [dm3] 2L_21763944_SNP [dm6]	G	T	2.477e^-4	0.675	INTRON CG31612
2R	9613326	2R_9613326_SNP [dm3] 2R_13725821_SNP [dm6]	C	T	2.478e^-4	0.675	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18553625	2R_18553625_SNP [dm3] 2R_22666120_SNP [dm6]	G	A	2.480e^-4	0.675	UTR_3_PRIME CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
3R	22604840	3R_22604840_SNP [dm3] 3R_26779118_SNP [dm6]	C	A	2.484e^-4	0.675	INTERGENIC
3R	20606331	3R_20606331_SNP [dm3] 3R_24780609_SNP [dm6]	G	A	2.486e^-4	0.675	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15154848	3R_15154848_SNP [dm3] 3R_19329126_SNP [dm6]	C	T	2.489e^-4	0.675	UPSTREAM CR43258 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15184436	3R_15184436_INS [dm3] 3R_19358714_INS [dm6]	T	TT	2.496e^-4	0.675	INTERGENIC
2L	12872207	2L_12872207_SNP [dm3] 2L_12872207_SNP [dm6]	A	C	2.526e^-4	0.675	INTERGENIC
2R	18097366	2R_18097366_SNP [dm3] 2R_22209861_SNP [dm6]	G	A	2.526e^-4	0.675	SYNONYMOUS_CODING CG3264
3R	23072704	3R_23072704_SNP [dm3] 3R_27246982_SNP [dm6]	G	A	2.528e^-4	0.675	NON_SYNONYMOUS_CODING CG5984	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19809302	3R_19809302_SNP [dm3] 3R_23983580_SNP [dm6]	C	A	2.539e^-4	0.675	DOWNSTREAM CG31140 EXON CR31451
2R	15781947	2R_15781947_SNP [dm3] 2R_19894442_SNP [dm6]	G	A	2.553e^-4	0.675	INTERGENIC
3R	25123052	3R_25123052_DEL [dm3] 3R_29297330_DEL [dm6]	TT	T	2.554e^-4	0.675	UPSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16187340	3R_16187340_SNP [dm3] 3R_20361618_SNP [dm6]	T	A	2.558e^-4	0.675	DOWNSTREAM MtnC INTERGENIC
3R	13558606	3R_13558606_SNP [dm3] 3R_17732884_SNP [dm6]	A	G	2.561e^-4	0.675	UTR_3_PRIME Lgr1 UPSTREAM CG14321	TF binding site BDTNP1_TFBS_dl
2R	17437430	2R_17437430_SNP [dm3] 2R_21549925_SNP [dm6]	C	A	2.563e^-4	0.675	INTRON Egfr	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4135269	2L_4135269_SNP [dm3] 2L_4135269_SNP [dm6]	A	G	2.570e^-4	0.675	INTERGENIC
2L	19255610	2L_19255610_SNP [dm3] 2L_19255610_SNP [dm6]	A	C	2.581e^-4	0.675	INTERGENIC
2R	4470770	2R_4470770_SNP [dm3] 2R_8583265_SNP [dm6]	G	A	2.588e^-4	0.675	INTRON CG42326
2L	12343599	2L_12343599_SNP [dm3] 2L_12343599_SNP [dm6]	C	T	2.604e^-4	0.675	UPSTREAM bru-2 DOWNSTREAM CG43813 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23857239	3R_23857239_SNP [dm3] 3R_28031517_SNP [dm6]	T	C	2.604e^-4	0.675	INTRON CG34362
X	18926465	X_18926465_SNP [dm3] X_19032432_SNP [dm6]	T	G	2.607e^-4	0.675	INTERGENIC
3R	22618685	3R_22618685_SNP [dm3] 3R_26792963_SNP [dm6]	C	T	2.610e^-4	0.675	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19687006	3L_19687006_SNP [dm3] 3L_19693906_SNP [dm6]	A	T	2.621e^-4	0.675	INTRON verm
3R	18151461	3R_18151461_SNP [dm3] 3R_22325739_SNP [dm6]	A	G	2.631e^-4	0.675	INTERGENIC
2R	7362755	2R_7362755_SNP [dm3] 2R_11475250_SNP [dm6]	G	A	2.646e^-4	0.675	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14289859	2L_14289859_INS [dm3] 2L_14289859_INS [dm6]	T	TGT	2.654e^-4	0.675	INTRON wb
X	4507317	X_4507317_SNP [dm3] X_4613284_SNP [dm6]	C	T	2.655e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3573211	2R_3573211_SNP [dm3] 2R_7685706_SNP [dm6]	G	A	2.657e^-4	0.675	INTRON CG1399
3R	18739046	3R_18739046_SNP [dm3] 3R_22913324_SNP [dm6]	G	C	2.657e^-4	0.675	INTRON klg
3L	7894698	3L_7894698_DEL [dm3] 3L_7901598_DEL [dm6]	AA	G	2.661e^-4	0.675	INTRON pbl
3R	26342656	3R_26342656_SNP [dm3] 3R_30516934_SNP [dm6]	T	A	2.663e^-4	0.675	DOWNSTREAM jdp & 1 other INTERGENIC
2L	19243595	2L_19243595_SNP [dm3] 2L_19243595_SNP [dm6]	C	T	2.668e^-4	0.675	INTERGENIC
2L	19243613	2L_19243613_DEL [dm3] 2L_19243613_DEL [dm6]	AGGA	A	2.668e^-4	0.675	INTERGENIC
2R	1838459	2R_1838459_SNP [dm3] 2R_5950954_SNP [dm6]	G	C	2.671e^-4	0.675	INTERGENIC
2L	4872486	2L_4872486_SNP [dm3] 2L_4872486_SNP [dm6]	T	C	2.671e^-4	0.675	INTRON pog	TF binding site mE1_TFBS_cad
3R	16015317	3R_16015317_SNP [dm3] 3R_20189595_SNP [dm6]	T	G	2.672e^-4	0.675	INTERGENIC
3R	16759013	3R_16759013_SNP [dm3] 3R_20933291_SNP [dm6]	G	A	2.676e^-4	0.675	INTRON CG31191
3R	22635839	3R_22635839_SNP [dm3] 3R_26810117_SNP [dm6]	C	A	2.677e^-4	0.675	INTRON Tl
2R	7331100	2R_7331100_SNP [dm3] 2R_11443595_SNP [dm6]	A	G	2.683e^-4	0.675	INTRON qvr
2R	18722216	2R_18722216_SNP [dm3] 2R_22834693_SNP [dm6]	T	A	2.690e^-4	0.675	UTR_5_PRIME CG12490 DOWNSTREAM CG30265
2R	17710752	2R_17710752_SNP [dm3] 2R_21823247_SNP [dm6]	G	A	2.695e^-4	0.675	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19750534	3R_19750534_SNP [dm3] 3R_23924812_SNP [dm6]	G	A	2.697e^-4	0.675	NON_SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4207463	3L_4207463_SNP [dm3] 3L_4207463_SNP [dm6]	A	T	2.701e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
3R	23822166	3R_23822166_SNP [dm3] 3R_27996444_SNP [dm6]	G	A	2.702e^-4	0.675	INTERGENIC
2L	5901776	2L_5901776_SNP [dm3] 2L_5901776_SNP [dm6]	A	G	2.712e^-4	0.675	INTERGENIC
3R	22640561	3R_22640561_SNP [dm3] 3R_26814839_SNP [dm6]	T	G	2.713e^-4	0.675	INTRON Tl
3R	23778101	3R_23778101_SNP [dm3] 3R_27952379_SNP [dm6]	C	A	2.721e^-4	0.675	SYNONYMOUS_CODING CG4951 DOWNSTREAM CG4951 & 1 other	TF binding site mE1_TFBS_cad
3L	6992451	3L_6992451_SNP [dm3] 3L_6999351_SNP [dm6]	C	T	2.732e^-4	0.675	INTRON Mp
2R	11105488	2R_11105488_SNP [dm3] 2R_15217983_SNP [dm6]	T	G	2.733e^-4	0.675	UPSTREAM CG8079 & 1 other DOWNSTREAM CR44463 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9940490	2L_9940490_SNP [dm3] 2L_9940490_SNP [dm6]	G	T	2.740e^-4	0.675	SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853
3R	15997324	3R_15997324_SNP [dm3] 3R_20171602_SNP [dm6]	G	A	2.755e^-4	0.675	INTRON CG5023
3R	8326840	3R_8326840_SNP [dm3] 3R_12501118_SNP [dm6]	C	G	2.755e^-4	0.675	INTERGENIC
3R	11266015	3R_11266015_SNP [dm3] 3R_15440293_SNP [dm6]	A	T	2.768e^-4	0.675	INTRON Act88F	regulatory region REDfly_CRMs
2L	20810811	2L_20810811_SNP [dm3] 2L_20810811_SNP [dm6]	A	G	2.774e^-4	0.675	INTRON CG9328
3L	11432370	3L_11432370_SNP [dm3] 3L_11439270_SNP [dm6]	C	G	2.782e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9472755	2R_9472755_SNP [dm3] 2R_13585250_SNP [dm6]	A	T	2.785e^-4	0.675	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	11051879	2L_11051879_SNP [dm3] 2L_11051879_SNP [dm6]	T	A	2.790e^-4	0.675	INTRON Samuel
2L	13043873	2L_13043873_SNP [dm3] 2L_13043873_SNP [dm6]	G	C	2.822e^-4	0.675	INTRON CG9932
3R	20017764	3R_20017764_SNP [dm3] 3R_24192042_SNP [dm6]	C	A	2.825e^-4	0.675	SPLICE_SITE_REGION jnj INTRON jnj
2R	19927403	2R_19927403_SNP [dm3] 2R_24039880_SNP [dm6]	G	C	2.828e^-4	0.675	SYNONYMOUS_CODING IntS1
3R	19805992	3R_19805992_SNP [dm3] 3R_23980270_SNP [dm6]	A	G	2.831e^-4	0.675	INTRON CG31140
2L	4119211	2L_4119211_SNP [dm3] 2L_4119211_SNP [dm6]	G	T	2.835e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9543236	3L_9543236_SNP [dm3] 3L_9550136_SNP [dm6]	A	G	2.835e^-4	0.675	INTRON CG42673
3R	19704269	3R_19704269_SNP [dm3] 3R_23878547_SNP [dm6]	A	C	2.844e^-4	0.675	INTRON Pli
X	2002300	X_2002300_SNP [dm3] X_2108267_SNP [dm6]	G	A	2.845e^-4	0.675	UTR_5_PRIME csw INTRON csw
3R	24086556	3R_24086556_SNP [dm3] 3R_28260834_SNP [dm6]	C	G	2.853e^-4	0.675	INTERGENIC
3R	17000017	3R_17000017_SNP [dm3] 3R_21174295_SNP [dm6]	C	G	2.854e^-4	0.675	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2927877	2L_2927877_SNP [dm3] 2L_2927877_SNP [dm6]	A	C	2.855e^-4	0.675	INTRON lilli
3R	16234882	3R_16234882_SNP [dm3] 3R_20409160_SNP [dm6]	T	G	2.857e^-4	0.675	UTR_3_PRIME CG10881 INTRON Gfrl
3L	4207457	3L_4207457_SNP [dm3] 3L_4207457_SNP [dm6]	A	T	2.860e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
3L	4207460	3L_4207460_SNP [dm3] 3L_4207460_SNP [dm6]	A	G	2.860e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
3R	26750786	3R_26750786_SNP [dm3] 3R_30925064_SNP [dm6]	C	A	2.860e^-4	0.675	INTRON Ptx1
2R	15525052	2R_15525052_SNP [dm3] 2R_19637547_SNP [dm6]	G	T	2.861e^-4	0.675	UPSTREAM CG43277 DOWNSTREAM CG18367 & 1 other INTERGENIC
3R	26812969	3R_26812969_SNP [dm3] 3R_30987247_SNP [dm6]	G	T	2.865e^-4	0.675	INTRON 5-HT7	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	21149713	2L_21149713_SNP [dm3] 2L_21149713_SNP [dm6]	G	T	2.883e^-4	0.675	INTERGENIC	transposable element FlyBase
3R	13104852	3R_13104852_SNP [dm3] 3R_17279130_SNP [dm6]	T	C	2.885e^-4	0.675	INTERGENIC
3R	15914617	3R_15914617_SNP [dm3] 3R_20088895_SNP [dm6]	T	A	2.889e^-4	0.675	INTERGENIC
3R	23876759	3R_23876759_DEL [dm3] 3R_28051037_DEL [dm6]	CATGC	C	2.889e^-4	0.675	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23876764	3R_23876764_INS [dm3] 3R_28051042_INS [dm6]	T	TAAACGAAA	2.889e^-4	0.675	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13458914	2L_13458914_SNP [dm3] 2L_13458914_SNP [dm6]	C	T	2.890e^-4	0.675	UPSTREAM CR45684 & 1 other DOWNSTREAM CG42809 INTRON CG42784
2L	13044631	2L_13044631_SNP [dm3] 2L_13044631_SNP [dm6]	T	G	2.892e^-4	0.675	INTRON CG9932
3R	15621328	3R_15621328_SNP [dm3] 3R_19795606_SNP [dm6]	G	A	2.894e^-4	0.675	INTRON bnl
3R	19546958	3R_19546958_SNP [dm3] 3R_23721236_SNP [dm6]	T	A	2.895e^-4	0.675	INTRON CG10232
3R	13528624	3R_13528624_SNP [dm3] 3R_17702902_SNP [dm6]	A	G	2.897e^-4	0.675	INTRON osa	TF binding site BDTNP1_TFBS_twi
3R	19818871	3R_19818871_SNP [dm3] 3R_23993149_SNP [dm6]	C	A	2.899e^-4	0.675	UPSTREAM Rab7 & 1 other INTRON Rab7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	19193761	2R_19193761_SNP [dm3] 2R_23306238_SNP [dm6]	T	G	2.900e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4207513	3L_4207513_SNP [dm3] 3L_4207513_SNP [dm6]	T	C	2.904e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
3R	16247683	3R_16247683_SNP [dm3] 3R_20421961_SNP [dm6]	G	T	2.907e^-4	0.675	INTRON Gfrl
2R	18451403	2R_18451403_SNP [dm3] 2R_22563898_SNP [dm6]	A	C	2.909e^-4	0.675	UTR_3_PRIME dnr1 DOWNSTREAM CG11362	TF binding site mE1_TFBS_cad
3R	26473702	3R_26473702_SNP [dm3] 3R_30647980_SNP [dm6]	G	A	2.909e^-4	0.675	SYNONYMOUS_CODING PH4alphaPV
3R	23864274	3R_23864274_SNP [dm3] 3R_28038552_SNP [dm6]	A	T	2.911e^-4	0.675	INTRON CG34362
2L	19243643	2L_19243643_SNP [dm3] 2L_19243643_SNP [dm6]	C	T	2.914e^-4	0.675	INTERGENIC
3R	20738079	3R_20738079_SNP [dm3] 3R_24912357_SNP [dm6]	C	A	2.915e^-4	0.675	UPSTREAM CR44267 DOWNSTREAM PIG-S INTERGENIC
X	720511	X_720511_SNP [dm3] X_826478_SNP [dm6]	C	T	2.918e^-4	0.675	INTRON CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16774130	3R_16774130_SNP [dm3] 3R_20948408_SNP [dm6]	G	A	2.918e^-4	0.675	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	16981083	2L_16981083_SNP [dm3] 2L_16981083_SNP [dm6]	A	T	2.918e^-4	0.675	DOWNSTREAM CG44406 INTRON beat-IIIb
2L	21904808	2L_21904808_SNP [dm3] 2L_21904808_SNP [dm6]	A	T	2.918e^-4	0.675	INTERGENIC
2L	11177174	2L_11177174_SNP [dm3] 2L_11177174_SNP [dm6]	G	A	2.920e^-4	0.675	INTRON Ca-beta
2R	1096549	2R_1096549_INS [dm3] 2R_5209044_INS [dm6]	G	GGAAGCG	2.920e^-4	0.675	INTRON Nipped-A	transposable element FlyBase
2R	12505045	2R_12505045_DEL [dm3] 2R_16617540_DEL [dm6]	TG	T	2.923e^-4	0.675	UPSTREAM CG5065 INTRON CG5065
3R	24015760	3R_24015760_SNP [dm3] 3R_28190038_SNP [dm6]	T	C	2.929e^-4	0.675	INTRON CG34354
3R	25059371	3R_25059371_SNP [dm3] 3R_29233649_SNP [dm6]	T	C	2.930e^-4	0.675	NON_SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16167580	3R_16167580_SNP [dm3] 3R_20341858_SNP [dm6]	G	A	2.932e^-4	0.675	INTRON Ir92a
2L	12858817	2L_12858817_SNP [dm3] 2L_12858817_SNP [dm6]	G	A	2.935e^-4	0.675	INTERGENIC
3R	22094070	3R_22094070_SNP [dm3] 3R_26268348_SNP [dm6]	A	T	2.941e^-4	0.675	INTRON CG6154
3R	16837110	3R_16837110_SNP [dm3] 3R_21011388_SNP [dm6]	G	A	2.945e^-4	0.675	SYNONYMOUS_CODING Calx UTR_3_PRIME Calx
3L	4207452	3L_4207452_DEL [dm3] 3L_4207452_DEL [dm6]	TG	T	2.947e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
2R	14683579	2R_14683579_SNP [dm3] 2R_18796074_SNP [dm6]	G	A	2.950e^-4	0.675	SYNONYMOUS_CODING MFS15 DOWNSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18722021	2R_18722021_SNP [dm3] 2R_22834498_SNP [dm6]	G	T	2.952e^-4	0.675	UTR_3_PRIME CG30265 UPSTREAM CG12490
X	5844284	X_5844284_SNP [dm3] X_5950251_SNP [dm6]	C	A	2.963e^-4	0.675	UTR_5_PRIME CG32755 DOWNSTREAM CG6041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19937061	2R_19937061_SNP [dm3] 2R_24049538_SNP [dm6]	C	A	2.972e^-4	0.675	SYNONYMOUS_CODING sei UPSTREAM gammaSnap1
2R	4470705	2R_4470705_SNP [dm3] 2R_8583200_SNP [dm6]	G	C	2.973e^-4	0.675	INTRON CG42326
X	6451064	X_6451064_SNP [dm3] X_6557031_SNP [dm6]	G	T	2.976e^-4	0.675	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	15726574	3R_15726574_SNP [dm3] 3R_19900852_SNP [dm6]	A	G	2.983e^-4	0.675	SYNONYMOUS_CODING CG4538	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12878928	2L_12878928_SNP [dm3] 2L_12878928_SNP [dm6]	T	A	2.984e^-4	0.675	INTERGENIC
2R	7002065	2R_7002065_SNP [dm3] 2R_11114560_SNP [dm6]	G	A	2.984e^-4	0.675	INTRON luna
3L	9789074	3L_9789074_SNP [dm3] 3L_9795974_SNP [dm6]	T	C	2.989e^-4	0.675	INTRON Zasp67
X	14764660	X_14764660_DEL [dm3] X_14870627_DEL [dm6]	AGTAGCA	A	2.989e^-4	0.675	INTRON Flo2 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21671079	3R_21671079_SNP [dm3] 3R_25845357_SNP [dm6]	C	G	2.997e^-4	0.675	UPSTREAM CR45654 DOWNSTREAM CR45653 INTERGENIC
3R	16773792	3R_16773792_SNP [dm3] 3R_20948070_SNP [dm6]	G	C	3.004e^-4	0.675	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_zfh1
3R	21392802	3R_21392802_SNP [dm3] 3R_25567080_SNP [dm6]	C	T	3.005e^-4	0.675	INTRON msi
3R	14861633	3R_14861633_SNP [dm3] 3R_19035911_SNP [dm6]	C	A	3.007e^-4	0.675	INTRON CG6026	TF binding site mE1_TFBS_inv
3R	23831554	3R_23831554_DEL [dm3] 3R_28005832_DEL [dm6]	CAT	C	3.012e^-4	0.675	INTERGENIC
2L	20371397	2L_20371397_SNP [dm3] 2L_20371397_SNP [dm6]	C	A	3.021e^-4	0.675	INTERGENIC
3R	21728089	3R_21728089_SNP [dm3] 3R_25902367_SNP [dm6]	C	G	3.027e^-4	0.675	UPSTREAM CG31089 DOWNSTREAM CR43259 & 1 other INTERGENIC
2L	21736025	2L_21736025_SNP [dm3] 2L_21736025_SNP [dm6]	C	A	3.037e^-4	0.675	INTERGENIC	transposable element FlyBase
3R	16561207	3R_16561207_SNP [dm3] 3R_20735485_SNP [dm6]	A	C	3.039e^-4	0.675	UPSTREAM cdc2c & 1 other DOWNSTREAM CR42786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	16956627	2L_16956627_SNP [dm3] 2L_16956627_SNP [dm6]	C	A	3.044e^-4	0.675	INTERGENIC
2L	12865223	2L_12865223_DEL [dm3] 2L_12865223_DEL [dm6]	ATTATTGTATTCA...	A	3.049e^-4	0.675	INTERGENIC
3R	26342655	3R_26342655_SNP [dm3] 3R_30516933_SNP [dm6]	G	A	3.056e^-4	0.675	DOWNSTREAM jdp & 1 other INTERGENIC
2R	10602698	2R_10602698_SNP [dm3] 2R_14715193_SNP [dm6]	C	T	3.063e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14234024	2R_14234024_INS [dm3] 2R_18346519_INS [dm6]	A	AA	3.063e^-4	0.675	INTRON sbb	TF binding site mE1_TFBS_inv
3R	23816575	3R_23816575_SNP [dm3] 3R_27990853_SNP [dm6]	G	A	3.066e^-4	0.675	UPSTREAM CG4815 INTERGENIC
3L	1145370	3L_1145370_SNP [dm3] 3L_1145370_SNP [dm6]	T	C	3.066e^-4	0.675	INTRON bab2
3R	15896219	3R_15896219_SNP [dm3] 3R_20070497_SNP [dm6]	T	C	3.069e^-4	0.675	INTERGENIC
2L	12833932	2L_12833932_SNP [dm3] 2L_12833932_SNP [dm6]	A	C	3.072e^-4	0.675	INTERGENIC
3L	3599993	3L_3599993_SNP [dm3] 3L_3599993_SNP [dm6]	G	A	3.073e^-4	0.675	INTRON Eip63E
2R	19193747	2R_19193747_SNP [dm3] 2R_23306224_SNP [dm6]	C	T	3.075e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15895162	3R_15895162_SNP [dm3] 3R_20069440_SNP [dm6]	C	T	3.075e^-4	0.675	INTERGENIC
2R	14769613	2R_14769613_SNP [dm3] 2R_18882108_SNP [dm6]	T	C	3.077e^-4	0.675	INTRON sano
3R	23870726	3R_23870726_SNP [dm3] 3R_28045004_SNP [dm6]	G	T	3.079e^-4	0.675	INTRON CG34362
2R	14683588	2R_14683588_SNP [dm3] 2R_18796083_SNP [dm6]	A	T	3.080e^-4	0.675	SYNONYMOUS_CODING MFS15 DOWNSTREAM l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12751007	3L_12751007_SNP [dm3] 3L_12757907_SNP [dm6]	A	G	3.082e^-4	0.675	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_inv
X	6254734	X_6254734_SNP [dm3] X_6360701_SNP [dm6]	A	T	3.086e^-4	0.675	UTR_3_PRIME kdn DOWNSTREAM swaPsi	TF binding site BDTNP1_TFBS_dl
3R	15737567	3R_15737567_SNP [dm3] 3R_19911845_SNP [dm6]	A	G	3.106e^-4	0.675	NON_SYNONYMOUS_CODING RhoGAP92B
3R	17557516	3R_17557516_SNP [dm3] 3R_21731794_SNP [dm6]	G	A	3.108e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19490123	2R_19490123_SNP [dm3] 2R_23602600_SNP [dm6]	T	C	3.111e^-4	0.675	UTR_5_PRIME CG5398 UPSTREAM CG10332 & 2 others
2R	18721689	2R_18721689_SNP [dm3] 2R_22834166_SNP [dm6]	G	T	3.113e^-4	0.675	SYNONYMOUS_CODING CG30265 UPSTREAM CG12490
2L	13043839	2L_13043839_SNP [dm3] 2L_13043839_SNP [dm6]	A	T	3.129e^-4	0.675	INTRON CG9932
2R	10771343	2R_10771343_SNP [dm3] 2R_14883838_SNP [dm6]	G	T	3.131e^-4	0.675	UTR_3_PRIME Cyp6a20
2L	13458072	2L_13458072_SNP [dm3] 2L_13458072_SNP [dm6]	A	T	3.133e^-4	0.675	STOP_LOST CG42809 DOWNSTREAM CR45684 INTRON CG42784
3L	2774875	3L_2774875_SNP [dm3] 3L_2774875_SNP [dm6]	C	T	3.133e^-4	0.675	SYNONYMOUS_CODING Atg2 UPSTREAM CG12093	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20802457	2L_20802457_INS [dm3] 2L_20802457_INS [dm6]	T	TT	3.141e^-4	0.675	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9067552	X_9067552_SNP [dm3] X_9173519_SNP [dm6]	G	T	3.142e^-4	0.675	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4534228	X_4534228_SNP [dm3] X_4640195_SNP [dm6]	T	C	3.166e^-4	0.675	SYNONYMOUS_CODING CG3081	TF binding site mE1_TFBS_chinmo
3R	16298868	3R_16298868_SNP [dm3] 3R_20473146_SNP [dm6]	T	A	3.180e^-4	0.675	INTRON Gfrl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14710596	3R_14710596_SNP [dm3] 3R_18884874_SNP [dm6]	C	G	3.181e^-4	0.675	INTERGENIC
3L	21910658	3L_21910658_SNP [dm3] 3L_21917558_SNP [dm6]	C	A	3.186e^-4	0.675	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21910659	3L_21910659_SNP [dm3] 3L_21917559_SNP [dm6]	A	T	3.186e^-4	0.675	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16280564	3R_16280564_DEL [dm3] 3R_20454842_DEL [dm6]	GG	G	3.187e^-4	0.675	INTRON Gfrl
3R	18371212	3R_18371212_DEL [dm3] 3R_22545490_DEL [dm6]	AAAT	A	3.193e^-4	0.675	INTRON AdipoR
3R	18371605	3R_18371605_SNP [dm3] 3R_22545883_SNP [dm6]	T	C	3.193e^-4	0.675	NON_SYNONYMOUS_CODING AdipoR INTRON AdipoR
3R	16159533	3R_16159533_SNP [dm3] 3R_20333811_SNP [dm6]	A	T	3.200e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4520513	2L_4520513_SNP [dm3] 2L_4520513_SNP [dm6]	G	A	3.200e^-4	0.675	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14421791	2R_14421791_SNP [dm3] 2R_18534286_SNP [dm6]	A	G	3.205e^-4	0.675	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	1751044	2R_1751044_SNP [dm3] 2R_5863539_SNP [dm6]	A	G	3.206e^-4	0.675	INTERGENIC
X	14194961	X_14194961_SNP [dm3] X_14300928_SNP [dm6]	C	T	3.209e^-4	0.675	INTERGENIC
3R	19918151	3R_19918151_SNP [dm3] 3R_24092429_SNP [dm6]	A	T	3.212e^-4	0.675	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl
2L	20857347	2L_20857347_SNP [dm3] 2L_20857347_SNP [dm6]	G	A	3.213e^-4	0.675	NON_SYNONYMOUS_CODING CG14400 DOWNSTREAM twit	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2923505	2R_2923505_SNP [dm3] 2R_7036000_SNP [dm6]	G	A	3.229e^-4	0.675	DOWNSTREAM CG33914 INTRON Tsp42Ei
3L	19898836	3L_19898836_SNP [dm3] 3L_19905736_SNP [dm6]	C	T	3.230e^-4	0.675	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	21881212	2L_21881212_SNP [dm3] 2L_21881212_SNP [dm6]	A	C	3.230e^-4	0.675	INTERGENIC
3L	2055902	3L_2055902_SNP [dm3] 3L_2055902_SNP [dm6]	T	C	3.234e^-4	0.675	SYNONYMOUS_CODING sls INTRON sls
3R	19754282	3R_19754282_SNP [dm3] 3R_23928560_SNP [dm6]	G	A	3.235e^-4	0.675	SPLICE_SITE_REGION CG43999 & 1 other UPSTREAM CG13601 & 2 others INTRON CG43999 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7231158	3L_7231158_SNP [dm3] 3L_7238058_SNP [dm6]	T	C	3.243e^-4	0.675	SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19848056	3R_19848056_SNP [dm3] 3R_24022334_SNP [dm6]	T	C	3.248e^-4	0.675	INTRON KrT95D
3R	16758969	3R_16758969_SNP [dm3] 3R_20933247_SNP [dm6]	C	T	3.249e^-4	0.675	INTRON CG31191
2R	12505043	2R_12505043_SNP [dm3] 2R_16617538_SNP [dm6]	T	A	3.272e^-4	0.675	UPSTREAM CG5065 INTRON CG5065
3L	11547142	3L_11547142_SNP [dm3] 3L_11554042_SNP [dm6]	T	G	3.272e^-4	0.675	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12833923	2L_12833923_SNP [dm3] 2L_12833923_SNP [dm6]	A	C	3.277e^-4	0.675	INTERGENIC
3R	22618313	3R_22618313_SNP [dm3] 3R_26792591_SNP [dm6]	G	A	3.280e^-4	0.675	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16306432	3R_16306432_SNP [dm3] 3R_20480710_SNP [dm6]	C	A	3.290e^-4	0.675	UTR_5_PRIME Gfrl INTRON Gfrl
2R	18097239	2R_18097239_SNP [dm3] 2R_22209734_SNP [dm6]	T	C	3.295e^-4	0.675	NON_SYNONYMOUS_CODING CG3264
2R	15069208	2R_15069208_SNP [dm3] 2R_19181703_SNP [dm6]	C	G	3.302e^-4	0.675	INTRON hppy
2L	3136405	2L_3136405_SNP [dm3] 2L_3136405_SNP [dm6]	A	T	3.307e^-4	0.675	INTRON toc
2L	13459090	2L_13459090_DEL [dm3] 2L_13459090_DEL [dm6]	AA	A	3.308e^-4	0.675	UPSTREAM CR45684 & 1 other INTRON CG42784
2L	12871576	2L_12871576_SNP [dm3] 2L_12871576_SNP [dm6]	A	G	3.313e^-4	0.675	INTERGENIC
3R	26811121	3R_26811121_SNP [dm3] 3R_30985399_SNP [dm6]	C	T	3.313e^-4	0.675	INTRON 5-HT7
3R	15890513	3R_15890513_DEL [dm3] 3R_20064791_DEL [dm6]	ACAAGA	A	3.316e^-4	0.675	INTERGENIC
2L	10215329	2L_10215329_SNP [dm3] 2L_10215329_SNP [dm6]	G	A	3.322e^-4	0.675	SYNONYMOUS_CODING Npc1a
3R	16235561	3R_16235561_SNP [dm3] 3R_20409839_SNP [dm6]	T	C	3.328e^-4	0.675	DOWNSTREAM CG10881 INTRON Gfrl
2R	4469855	2R_4469855_SNP [dm3] 2R_8582350_SNP [dm6]	G	C	3.330e^-4	0.675	INTRON CG42326	TF binding site mE1_TFBS_cad
2L	19234661	2L_19234661_SNP [dm3] 2L_19234661_SNP [dm6]	T	C	3.334e^-4	0.675	INTERGENIC
2R	6018123	2R_6018123_SNP [dm3] 2R_10130618_SNP [dm6]	G	A	3.336e^-4	0.675	INTRON gem	TF binding site BDTNP1_TFBS_dl
3R	15655750	3R_15655750_SNP [dm3] 3R_19830028_SNP [dm6]	C	T	3.337e^-4	0.675	INTRON bnl
2L	20946467	2L_20946467_SNP [dm3] 2L_20946467_SNP [dm6]	G	A	3.345e^-4	0.675	DOWNSTREAM CR44606 INTERGENIC
2R	11105621	2R_11105621_SNP [dm3] 2R_15218116_SNP [dm6]	G	C	3.350e^-4	0.675	UPSTREAM CG8079 & 1 other DOWNSTREAM Hex-C EXON CR44463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	15150601	3R_15150601_INS [dm3] 3R_19324879_INS [dm6]	T	TT	3.353e^-4	0.675	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12872320	2L_12872320_SNP [dm3] 2L_12872320_SNP [dm6]	T	G	3.354e^-4	0.675	INTERGENIC
3R	26726340	3R_26726340_DEL [dm3] 3R_30900618_DEL [dm6]	TAGAGATTAG	T	3.361e^-4	0.675	UTR_3_PRIME Cyp4c3 DOWNSTREAM CG33483
3R	14640473	3R_14640473_SNP [dm3] 3R_18814751_SNP [dm6]	G	T	3.362e^-4	0.675	INTRON CG18208
3L	5940360	3L_5940360_SNP [dm3] 3L_5947260_SNP [dm6]	A	G	3.365e^-4	0.675	INTRON CG33993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20522119	2L_20522119_SNP [dm3] 2L_20522119_SNP [dm6]	C	G	3.370e^-4	0.675	INTERGENIC
2R	9475816	2R_9475816_SNP [dm3] 2R_13588311_SNP [dm6]	A	C	3.372e^-4	0.675	INTRON CG6191 & 1 other
2R	7355004	2R_7355004_SNP [dm3] 2R_11467499_SNP [dm6]	T	C	3.382e^-4	0.675	INTERGENIC
3L	19225595	3L_19225595_SNP [dm3] 3L_19232495_SNP [dm6]	G	A	3.396e^-4	0.675	START_GAINED fz2 UTR_5_PRIME fz2
3L	19314518	3L_19314518_INS [dm3] 3L_19321418_INS [dm6]	T	TT	3.396e^-4	0.675	INTRON pip
3R	14037000	3R_14037000_SNP [dm3] 3R_18211278_SNP [dm6]	T	G	3.400e^-4	0.675	INTRON CG7985
3R	11120776	3R_11120776_SNP [dm3] 3R_15295054_SNP [dm6]	T	G	3.413e^-4	0.675	INTRON Tm1
2R	19938377	2R_19938377_SNP [dm3] 2R_24050854_SNP [dm6]	G	C	3.420e^-4	0.675	SYNONYMOUS_CODING sei
2R	13790848	2R_13790848_SNP [dm3] 2R_17903343_SNP [dm6]	T	G	3.421e^-4	0.675	INTRON Elk
3L	6631574	3L_6631574_SNP [dm3] 3L_6638474_SNP [dm6]	G	C	3.431e^-4	0.675	INTERGENIC
3R	21688012	3R_21688012_SNP [dm3] 3R_25862290_SNP [dm6]	A	T	3.444e^-4	0.675	INTRON CG5890
2L	3190712	2L_3190712_SNP [dm3] 2L_3190712_SNP [dm6]	T	A	3.449e^-4	0.675	NON_SYNONYMOUS_CODING CG34393
2R	7355011	2R_7355011_SNP [dm3] 2R_11467506_SNP [dm6]	C	A	3.454e^-4	0.675	INTERGENIC
3R	16381974	3R_16381974_SNP [dm3] 3R_20556252_SNP [dm6]	T	C	3.461e^-4	0.675	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Trl
2L	19698816	2L_19698816_SNP [dm3] 2L_19698816_SNP [dm6]	A	G	3.468e^-4	0.675	DOWNSTREAM scw INTRON Lar
2L	1834490	2L_1834490_SNP [dm3] 2L_1834490_SNP [dm6]	A	G	3.470e^-4	0.675	INTERGENIC
2L	16991172	2L_16991172_SNP [dm3] 2L_16991172_SNP [dm6]	G	T	3.478e^-4	0.675	INTRON beat-IIIb
3R	10809984	3R_10809984_SNP [dm3] 3R_14984262_SNP [dm6]	T	A	3.489e^-4	0.675	INTERGENIC
2R	17845159	2R_17845159_SNP [dm3] 2R_21957654_SNP [dm6]	C	A	3.492e^-4	0.675	INTERGENIC
X	16594864	X_16594864_SNP [dm3] X_16700831_SNP [dm6]	G	A	3.497e^-4	0.675	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
2R	20163892	2R_20163892_SNP [dm3] 2R_24276369_SNP [dm6]	C	T	3.504e^-4	0.675	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14371268	3R_14371268_SNP [dm3] 3R_18545546_SNP [dm6]	A	T	3.505e^-4	0.675	UTR_5_PRIME fru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13043838	2L_13043838_SNP [dm3] 2L_13043838_SNP [dm6]	T	A	3.508e^-4	0.675	INTRON CG9932
2L	13043841	2L_13043841_DEL [dm3] 2L_13043841_DEL [dm6]	AAGGACACTTTTCCTT...	A	3.508e^-4	0.675	INTRON CG9932
2L	13043863	2L_13043863_SNP [dm3] 2L_13043863_SNP [dm6]	G	C	3.508e^-4	0.675	INTRON CG9932
2L	13043870	2L_13043870_SNP [dm3] 2L_13043870_SNP [dm6]	T	G	3.508e^-4	0.675	INTRON CG9932
3R	16287049	3R_16287049_SNP [dm3] 3R_20461327_SNP [dm6]	G	A	3.516e^-4	0.675	INTRON Gfrl
X	17000274	X_17000274_SNP [dm3] X_17106241_SNP [dm6]	A	G	3.521e^-4	0.675	UPSTREAM Arpc3B INTERGENIC
2R	7355070	2R_7355070_SNP [dm3] 2R_11467565_SNP [dm6]	G	T	3.523e^-4	0.675	INTERGENIC
3L	1484403	3L_1484403_SNP [dm3] 3L_1484403_SNP [dm6]	G	C	3.528e^-4	0.675	INTRON stet	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	23872975	3R_23872975_SNP [dm3] 3R_28047253_SNP [dm6]	C	A	3.532e^-4	0.675	UPSTREAM CG34362 INTRON CG34362
3R	19809684	3R_19809684_SNP [dm3] 3R_23983962_SNP [dm6]	T	A	3.533e^-4	0.675	DOWNSTREAM CG31140 EXON CR31451
3R	11269216	3R_11269216_SNP [dm3] 3R_15443494_SNP [dm6]	C	G	3.540e^-4	0.675	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
3R	24346849	3R_24346849_SNP [dm3] 3R_28521127_SNP [dm6]	A	C	3.543e^-4	0.675	UTR_3_PRIME Ppn UPSTREAM CG31051
3R	16483661	3R_16483661_SNP [dm3] 3R_20657939_SNP [dm6]	G	A	3.544e^-4	0.675	INTRON Nep4
2L	11671637	2L_11671637_SNP [dm3] 2L_11671637_SNP [dm6]	G	T	3.556e^-4	0.675	INTERGENIC
2L	8784420	2L_8784420_SNP [dm3] 2L_8784420_SNP [dm6]	C	T	3.556e^-4	0.675	INTERGENIC
2R	9612981	2R_9612981_SNP [dm3] 2R_13725476_SNP [dm6]	T	A	3.559e^-4	0.675	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9891550	X_9891550_SNP [dm3] X_9997517_SNP [dm6]	C	A	3.559e^-4	0.675	INTRON CG32694
3R	26198165	3R_26198165_SNP [dm3] 3R_30372443_SNP [dm6]	A	T	3.562e^-4	0.675	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25930732	3R_25930732_SNP [dm3] 3R_30105010_SNP [dm6]	C	T	3.570e^-4	0.675	INTRON sima
2L	16241669	2L_16241669_DEL [dm3] 2L_16241669_DEL [dm6]	TAAGCAATTGACTT...	T	3.570e^-4	0.675	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
3R	23792492	3R_23792492_SNP [dm3] 3R_27966770_SNP [dm6]	T	A	3.570e^-4	0.675	NON_SYNONYMOUS_CODING CG4849 DOWNSTREAM betaTub97EF
3R	23872772	3R_23872772_SNP [dm3] 3R_28047050_SNP [dm6]	G	A	3.579e^-4	0.675	UPSTREAM CG34362 INTRON CG34362
3R	19547001	3R_19547001_SNP [dm3] 3R_23721279_SNP [dm6]	A	C	3.583e^-4	0.675	INTRON CG10232
3R	26287489	3R_26287489_SNP [dm3] 3R_30461767_SNP [dm6]	A	G	3.585e^-4	0.675	INTRON CDase	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22531517	3R_22531517_SNP [dm3] 3R_26705795_SNP [dm6]	C	T	3.596e^-4	0.675	INTRON amon
3R	26462171	3R_26462171_SNP [dm3] 3R_30636449_SNP [dm6]	A	G	3.600e^-4	0.675	INTERGENIC
2R	15070154	2R_15070154_SNP [dm3] 2R_19182649_SNP [dm6]	A	G	3.610e^-4	0.675	INTRON hppy
2L	13640604	2L_13640604_SNP [dm3] 2L_13640604_SNP [dm6]	T	C	3.612e^-4	0.675	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13640607	2L_13640607_SNP [dm3] 2L_13640607_SNP [dm6]	A	G	3.612e^-4	0.675	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13640608	2L_13640608_SNP [dm3] 2L_13640608_SNP [dm6]	T	A	3.612e^-4	0.675	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26287509	3R_26287509_SNP [dm3] 3R_30461787_SNP [dm6]	C	A	3.612e^-4	0.675	INTRON CDase	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13508591	X_13508591_SNP [dm3] X_13614558_SNP [dm6]	A	T	3.618e^-4	0.675	SYNONYMOUS_CODING tth	TF binding site mE1_TFBS_chinmo
3R	7013703	3R_7013703_SNP [dm3] 3R_11187981_SNP [dm6]	A	T	3.621e^-4	0.675	INTERGENIC
3R	26517817	3R_26517817_SNP [dm3] 3R_30692095_SNP [dm6]	A	G	3.622e^-4	0.675	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16993983	3R_16993983_SNP [dm3] 3R_21168261_SNP [dm6]	A	T	3.630e^-4	0.675	UPSTREAM Snmp1 INTRON SNF4Agamma
3R	15104492	3R_15104492_SNP [dm3] 3R_19278770_SNP [dm6]	C	A	3.632e^-4	0.675	DOWNSTREAM CR44173 INTERGENIC
2L	7613383	2L_7613383_SNP [dm3] 2L_7613383_SNP [dm6]	T	C	3.639e^-4	0.675	UTR_5_PRIME CG6739
3R	16506167	3R_16506167_SNP [dm3] 3R_20680445_SNP [dm6]	G	T	3.641e^-4	0.675	INTERGENIC
2L	21869756	2L_21869756_SNP [dm3] 2L_21869756_SNP [dm6]	A	T	3.649e^-4	0.675	DOWNSTREAM CR44920 EXON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13492052	3R_13492052_SNP [dm3] 3R_17666330_SNP [dm6]	T	C	3.651e^-4	0.675	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15233427	3R_15233427_SNP [dm3] 3R_19407705_SNP [dm6]	A	G	3.653e^-4	0.675	INTERGENIC
3R	16592979	3R_16592979_SNP [dm3] 3R_20767257_SNP [dm6]	A	G	3.657e^-4	0.675	INTRON Syp	TF binding site mE1_TFBS_cad
2L	12863574	2L_12863574_SNP [dm3] 2L_12863574_SNP [dm6]	C	T	3.659e^-4	0.675	INTERGENIC
2R	9469190	2R_9469190_SNP [dm3] 2R_13581685_SNP [dm6]	A	G	3.668e^-4	0.675	SPLICE_SITE_REGION CG6191 & 1 other INTRON CG6191 & 1 other	TF binding site mE1_TFBS_sens
2R	9469227	2R_9469227_SNP [dm3] 2R_13581722_SNP [dm6]	A	T	3.668e^-4	0.675	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_sens
2R	9469232	2R_9469232_SNP [dm3] 2R_13581727_SNP [dm6]	T	C	3.668e^-4	0.675	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_sens
3R	23943228	3R_23943228_SNP [dm3] 3R_28117506_SNP [dm6]	G	T	3.670e^-4	0.675	INTERGENIC
3R	23864276	3R_23864276_SNP [dm3] 3R_28038554_SNP [dm6]	T	A	3.671e^-4	0.675	INTRON CG34362
3R	19650047	3R_19650047_SNP [dm3] 3R_23824325_SNP [dm6]	C	T	3.671e^-4	0.675	INTRON CG34355
2L	13044683	2L_13044683_SNP [dm3] 2L_13044683_SNP [dm6]	T	G	3.671e^-4	0.675	INTRON CG9932
3R	18492517	3R_18492517_SNP [dm3] 3R_22666795_SNP [dm6]	G	T	3.675e^-4	0.675	START_GAINED CG45058 UTR_5_PRIME CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16133065	3R_16133065_SNP [dm3] 3R_20307343_SNP [dm6]	G	A	3.676e^-4	0.675	SPLICE_SITE_REGION CG4362 SYNONYMOUS_CODING CG4362	TF binding site BDTNP1_TFBS_dl
3R	26698627	3R_26698627_INS [dm3] 3R_30872905_INS [dm6]	A	AGA	3.681e^-4	0.675	UPSTREAM CG15545 INTERGENIC
3R	16439719	3R_16439719_SNP [dm3] 3R_20613997_SNP [dm6]	G	A	3.691e^-4	0.675	NON_SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad
3R	19529610	3R_19529610_SNP [dm3] 3R_23703888_SNP [dm6]	C	A	3.703e^-4	0.675	NON_SYNONYMOUS_CODING CG31413 UPSTREAM CG31414
3L	7695308	3L_7695308_SNP [dm3] 3L_7702208_SNP [dm6]	A	G	3.707e^-4	0.675	INTRON CG32373 & 1 other
2L	11597660	2L_11597660_SNP [dm3] 2L_11597660_SNP [dm6]	G	C	3.715e^-4	0.675	INTRON kek2	TF binding site mE1_TFBS_inv
X	8142194	X_8142194_SNP [dm3] X_8248161_SNP [dm6]	C	G	3.723e^-4	0.675	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	11596962	2L_11596962_SNP [dm3] 2L_11596962_SNP [dm6]	T	C	3.724e^-4	0.675	INTRON kek2	TF binding site mE1_TFBS_inv
3L	2048509	3L_2048509_SNP [dm3] 3L_2048509_SNP [dm6]	C	T	3.725e^-4	0.675	SYNONYMOUS_CODING sls
3R	20017754	3R_20017754_SNP [dm3] 3R_24192032_SNP [dm6]	G	T	3.726e^-4	0.675	INTRON jnj
3R	4354619	3R_4354619_SNP [dm3] 3R_8528897_SNP [dm6]	A	G	3.728e^-4	0.675	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12003993	3L_12003993_SNP [dm3] 3L_12010893_SNP [dm6]	T	C	3.730e^-4	0.675	NON_SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21007404	2L_21007404_SNP [dm3] 2L_21007404_SNP [dm6]	T	C	3.730e^-4	0.675	INTRON CG42238
3L	19686978	3L_19686978_SNP [dm3] 3L_19693878_SNP [dm6]	A	T	3.735e^-4	0.675	INTRON verm
3R	14337306	3R_14337306_SNP [dm3] 3R_18511584_SNP [dm6]	T	C	3.736e^-4	0.675	INTRON fru
2R	7355010	2R_7355010_SNP [dm3] 2R_11467505_SNP [dm6]	G	A	3.749e^-4	0.675	INTERGENIC
X	16550530	X_16550530_SNP [dm3] X_16656497_SNP [dm6]	T	G	3.753e^-4	0.675	NON_SYNONYMOUS_CODING r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	9469195	2R_9469195_SNP [dm3] 2R_13581690_SNP [dm6]	G	A	3.770e^-4	0.675	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_sens
3L	13465217	3L_13465217_SNP [dm3] 3L_13472117_SNP [dm6]	C	T	3.771e^-4	0.675	INTRON CG10089
3L	13465242	3L_13465242_SNP [dm3] 3L_13472142_SNP [dm6]	G	A	3.771e^-4	0.675	INTRON CG10089
2L	22014652	2L_22014652_SNP [dm3] 2L_22014652_SNP [dm6]	C	T	3.774e^-4	0.675	UPSTREAM CG31693 INTERGENIC	transposable element FlyBase
2R	10550820	2R_10550820_SNP [dm3] 2R_14663315_SNP [dm6]	A	T	3.781e^-4	0.675	DOWNSTREAM CG12861 INTERGENIC
3R	17252528	3R_17252528_SNP [dm3] 3R_21426806_SNP [dm6]	G	A	3.783e^-4	0.675	UTR_3_PRIME lbl INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4264941	2L_4264941_SNP [dm3] 2L_4264941_SNP [dm6]	C	T	3.797e^-4	0.675	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7354986	2R_7354986_SNP [dm3] 2R_11467481_SNP [dm6]	G	A	3.810e^-4	0.675	INTERGENIC
3L	4207466	3L_4207466_SNP [dm3] 3L_4207466_SNP [dm6]	C	A	3.811e^-4	0.675	DOWNSTREAM Cpr64Aa INTRON CG43367
3R	16418094	3R_16418094_SNP [dm3] 3R_20592372_SNP [dm6]	C	A	3.813e^-4	0.675	NON_SYNONYMOUS_CODING CG4159 UPSTREAM bon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	13023746	2L_13023746_SNP [dm3] 2L_13023746_SNP [dm6]	A	C	3.814e^-4	0.675	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad
X	8630454	X_8630454_SNP [dm3] X_8736421_SNP [dm6]	C	A	3.835e^-4	0.675	INTERGENIC
2L	7687992	2L_7687992_SNP [dm3] 2L_7687992_SNP [dm6]	A	G	3.840e^-4	0.675	SYNONYMOUS_CODING Myo28B1
3R	27096203	3R_27096203_INS [dm3] 3R_31270481_INS [dm6]	T	TTCA	3.850e^-4	0.675	INTERGENIC
3R	27096207	3R_27096207_DEL [dm3] 3R_31270485_DEL [dm6]	ATTT	A	3.850e^-4	0.675	INTERGENIC
3R	22639006	3R_22639006_SNP [dm3] 3R_26813284_SNP [dm6]	G	A	3.850e^-4	0.675	INTRON Tl
2R	6374435	2R_6374435_SNP [dm3] 2R_10486930_SNP [dm6]	C	T	3.851e^-4	0.675	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15262945	3R_15262945_SNP [dm3] 3R_19437223_SNP [dm6]	G	A	3.854e^-4	0.675	INTRON CG31221
2R	18462794	2R_18462794_SNP [dm3] 2R_22575289_SNP [dm6]	G	A	3.864e^-4	0.675	INTRON dnr1
2L	8782977	2L_8782977_SNP [dm3] 2L_8782977_SNP [dm6]	A	G	3.866e^-4	0.675	UPSTREAM CG42710 INTERGENIC
3R	19435378	3R_19435378_SNP [dm3] 3R_23609656_SNP [dm6]	G	A	3.867e^-4	0.675	INTRON CG31145
3R	15622019	3R_15622019_SNP [dm3] 3R_19796297_SNP [dm6]	T	C	3.878e^-4	0.675	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15783685	3R_15783685_SNP [dm3] 3R_19957963_SNP [dm6]	C	T	3.883e^-4	0.675	INTRON Hs6st
2L	20799658	2L_20799658_SNP [dm3] 2L_20799658_SNP [dm6]	A	T	3.887e^-4	0.675	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16306552	3R_16306552_SNP [dm3] 3R_20480830_SNP [dm6]	A	T	3.889e^-4	0.675	UTR_5_PRIME Gfrl INTRON Gfrl
3R	16561016	3R_16561016_SNP [dm3] 3R_20735294_SNP [dm6]	C	A	3.891e^-4	0.675	UPSTREAM cdc2c & 1 other EXON CR42786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	15834326	3R_15834326_SNP [dm3] 3R_20008604_SNP [dm6]	G	A	3.891e^-4	0.675	UPSTREAM MED25 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19265075	2L_19265075_SNP [dm3] 2L_19265075_SNP [dm6]	C	T	3.892e^-4	0.675	INTERGENIC
2L	1462979	2L_1462979_SNP [dm3] 2L_1462979_SNP [dm6]	A	G	3.893e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	17456381	3L_17456381_INS [dm3] 3L_17463281_INS [dm6]	A	AA	3.894e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18255944	3R_18255944_SNP [dm3] 3R_22430222_SNP [dm6]	T	C	3.914e^-4	0.675	INTRON CG13847
X	16050954	X_16050954_SNP [dm3] X_16156921_SNP [dm6]	C	T	3.916e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15711751	3R_15711751_INS [dm3] 3R_19886029_INS [dm6]	G	GTG	3.918e^-4	0.675	UTR_3_PRIME Pk92B DOWNSTREAM ninaE
3L	2044836	3L_2044836_SNP [dm3] 3L_2044836_SNP [dm6]	A	G	3.920e^-4	0.675	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
2L	3345374	2L_3345374_SNP [dm3] 2L_3345374_SNP [dm6]	C	T	3.922e^-4	0.675	INTRON E23
2R	17218795	2R_17218795_SNP [dm3] 2R_21331290_SNP [dm6]	A	G	3.934e^-4	0.675	UPSTREAM snoRNA:Me28S-A2589c DOWNSTREAM snoRNA:Psi18S-841b & 4 others INTRON dom
3L	6630622	3L_6630622_SNP [dm3] 3L_6637522_SNP [dm6]	T	A	3.942e^-4	0.675	INTERGENIC
2L	20799615	2L_20799615_SNP [dm3] 2L_20799615_SNP [dm6]	A	C	3.945e^-4	0.675	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12833935	2L_12833935_SNP [dm3] 2L_12833935_SNP [dm6]	T	G	3.948e^-4	0.675	INTERGENIC
2L	11297381	2L_11297381_SNP [dm3] 2L_11297381_SNP [dm6]	C	A	3.949e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16288702	X_16288702_SNP [dm3] X_16394669_SNP [dm6]	G	C	3.950e^-4	0.675	INTRON mei-41
2R	12299292	2R_12299292_SNP [dm3] 2R_16411787_SNP [dm6]	C	G	3.951e^-4	0.675	INTRON Sema-2b
3R	14028069	3R_14028069_SNP [dm3] 3R_18202347_SNP [dm6]	A	G	3.952e^-4	0.675	INTRON CG7985
2L	7606346	2L_7606346_SNP [dm3] 2L_7606346_SNP [dm6]	C	T	3.954e^-4	0.675	INTRON Cyp4d21
2L	16992235	2L_16992235_SNP [dm3] 2L_16992235_SNP [dm6]	G	A	3.958e^-4	0.675	INTRON beat-IIIb
3L	13465220	3L_13465220_SNP [dm3] 3L_13472120_SNP [dm6]	C	G	3.960e^-4	0.675	INTRON CG10089
2L	7687988	2L_7687988_SNP [dm3] 2L_7687988_SNP [dm6]	C	A	3.962e^-4	0.675	NON_SYNONYMOUS_CODING Myo28B1
X	4591484	X_4591484_SNP [dm3] X_4697451_SNP [dm6]	T	C	3.964e^-4	0.675	INTRON ctp
2R	13790933	2R_13790933_SNP [dm3] 2R_17903428_SNP [dm6]	G	A	3.964e^-4	0.675	INTRON Elk
3R	15737636	3R_15737636_SNP [dm3] 3R_19911914_SNP [dm6]	A	G	3.975e^-4	0.675	INTRON RhoGAP92B
3R	18687879	3R_18687879_DEL [dm3] 3R_22862157_DEL [dm6]	TACA	T	3.976e^-4	0.675	INTERGENIC
2L	13044702	2L_13044702_INS [dm3] 2L_13044702_INS [dm6]	A	ATAAA	3.980e^-4	0.675	INTRON CG9932
3L	19897245	3L_19897245_SNP [dm3] 3L_19904145_SNP [dm6]	C	A	3.984e^-4	0.675	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10005636	2R_10005636_DEL [dm3] 2R_14118131_DEL [dm6]	TT	T	3.984e^-4	0.675	INTRON Prosap
2R	15950797	2R_15950797_SNP [dm3] 2R_20063292_SNP [dm6]	C	A	3.987e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	15582440	3L_15582440_SNP [dm3] 3L_15589340_SNP [dm6]	T	A	3.991e^-4	0.675	UTR_5_PRIME RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	19724190	X_19724190_SNP [dm3] X_19830157_SNP [dm6]	C	T	3.999e^-4	0.675	DOWNSTREAM pico INTERGENIC
3L	17979018	3L_17979018_SNP [dm3] 3L_17985918_SNP [dm6]	G	C	3.999e^-4	0.675	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7300024	3L_7300024_SNP [dm3] 3L_7306924_SNP [dm6]	G	A	3.999e^-4	0.675	INTRON unc-13-4A
2L	13274279	2L_13274279_SNP [dm3] 2L_13274279_SNP [dm6]	T	A	4.003e^-4	0.675	INTRON CG44085
X	15095140	X_15095140_SNP [dm3] X_15201107_SNP [dm6]	C	T	4.010e^-4	0.675	INTERGENIC
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	4.011e^-4	0.675	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
2R	18097078	2R_18097078_SNP [dm3] 2R_22209573_SNP [dm6]	C	T	4.013e^-4	0.675	SYNONYMOUS_CODING CG3264
3R	15892791	3R_15892791_SNP [dm3] 3R_20067069_SNP [dm6]	T	C	4.013e^-4	0.675	INTERGENIC
3L	5864459	3L_5864459_SNP [dm3] 3L_5871359_SNP [dm6]	C	G	4.022e^-4	0.675	UPSTREAM CG5568 INTERGENIC
3L	10381185	3L_10381185_SNP [dm3] 3L_10388085_SNP [dm6]	T	C	4.022e^-4	0.675	DOWNSTREAM CR45245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15874380	3R_15874380_SNP [dm3] 3R_20048658_SNP [dm6]	C	T	4.028e^-4	0.675	UTR_3_PRIME CG33934 & 1 other INTRON CG17193
3R	16438437	3R_16438437_SNP [dm3] 3R_20612715_SNP [dm6]	T	A	4.029e^-4	0.675	DOWNSTREAM bon INTRON CG15923
3R	16476253	3R_16476253_SNP [dm3] 3R_20650531_SNP [dm6]	G	T	4.029e^-4	0.675	NON_SYNONYMOUS_CODING GluRIID
3R	16528358	3R_16528358_SNP [dm3] 3R_20702636_SNP [dm6]	T	A	4.029e^-4	0.675	INTRON Oamb
3R	14795396	3R_14795396_SNP [dm3] 3R_18969674_SNP [dm6]	T	C	4.038e^-4	0.675	SPLICE_SITE_REGION CG42613 & 1 other INTRON CG42613 & 1 other
3R	19649926	3R_19649926_SNP [dm3] 3R_23824204_SNP [dm6]	T	G	4.039e^-4	0.675	INTRON CG34355
3R	16181690	3R_16181690_SNP [dm3] 3R_20355968_SNP [dm6]	A	G	4.040e^-4	0.675	INTERGENIC
3R	25164706	3R_25164706_DEL [dm3] 3R_29338984_DEL [dm6]	GG	G	4.041e^-4	0.675	INTERGENIC
2L	20825695	2L_20825695_SNP [dm3] 2L_20825695_SNP [dm6]	C	T	4.055e^-4	0.675	SYNONYMOUS_CODING CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16954086	2L_16954086_SNP [dm3] 2L_16954086_SNP [dm6]	T	A	4.055e^-4	0.675	INTERGENIC
3R	20851122	3R_20851122_SNP [dm3] 3R_25025400_SNP [dm6]	T	C	4.055e^-4	0.675	UTR_5_PRIME Hr96 UPSTREAM CG11781 DOWNSTREAM beta4GalT7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16076443	3L_16076443_SNP [dm3] 3L_16083343_SNP [dm6]	A	T	4.057e^-4	0.675	NON_SYNONYMOUS_CODING CG33258 UPSTREAM CG13075
3R	15828797	3R_15828797_DEL [dm3] 3R_20003075_DEL [dm6]	AAAATGTAGAAATCCCACAC...	A	4.058e^-4	0.675	INTRON Hs6st

By genomic position
Variant impact
Gene name

sd_Lifespan phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results