DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.645e^-19)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	<
In_3R_K	<
In_3R_Mo	<

Kruskal-Wallis test

Covariate	χ²	p-value
In_3R_P	16.1262	0.0003
In_3R_K	27.462	1.0882e-06
In_3R_Mo	10.4084	0.0055

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4631 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15182170	2L_15182170_INS [dm3] 2L_15182170_INS [dm6]	T	TCTT	4.350e^-8	0.046	INTRON CG4168
3L	14384514	3L_14384514_SNP [dm3] 3L_14391414_SNP [dm6]	C	T	4.869e^-8	0.046	INTERGENIC
3L	473509	3L_473509_INS [dm3] 3L_473509_INS [dm6]	C	CTTTTC	1.026e^-7	0.064	INTRON klar
3R	14752837	3R_14752837_SNP [dm3] 3R_18927115_SNP [dm6]	A	G	2.985e^-7	0.093	UTR_3_PRIME Mpc1 DOWNSTREAM Xrp1
3R	14752822	3R_14752822_SNP [dm3] 3R_18927100_SNP [dm6]	G	T	4.142e^-7	0.093	UTR_3_PRIME Mpc1 DOWNSTREAM Xrp1
3R	11252079	3R_11252079_DEL [dm3] 3R_15426357_DEL [dm6]	GCTC	G	4.805e^-7	0.093	INTRON CG6118
3R	9552543	3R_9552543_DEL [dm3] 3R_13726821_DEL [dm6]	TAAATG	T	5.082e^-7	0.093	INTRON CG34383
3R	14669930	3R_14669930_SNP [dm3] 3R_18844208_SNP [dm6]	G	A	5.509e^-7	0.093	INTRON CG18208
3R	9552564	3R_9552564_DEL [dm3] 3R_13726842_DEL [dm6]	AGTCT	A	6.581e^-7	0.093	INTRON CG34383
3R	14812422	3R_14812422_SNP [dm3] 3R_18986700_SNP [dm6]	G	A	6.726e^-7	0.093	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9050782	X_9050782_SNP [dm3] X_9156749_SNP [dm6]	G	A	8.305e^-7	0.093	UPSTREAM His3.3B DOWNSTREAM Ost48 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	6175206	2R_6175206_INS [dm3] 2R_10287701_INS [dm6]	A	AA	8.559e^-7	0.093	UPSTREAM CAP INTRON CAP
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	8.946e^-7	0.093	SYNONYMOUS_CODING CG14857
3L	12065886	3L_12065886_SNP [dm3] 3L_12072786_SNP [dm6]	T	A	8.971e^-7	0.093	INTRON Sema-5c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	12109684	3L_12109684_SNP [dm3] 3L_12116584_SNP [dm6]	A	G	9.164e^-7	0.093	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11605427	3R_11605427_DEL [dm3] 3R_15779705_DEL [dm6]	AGAGTGGCCAATAAAATTCG...	A	9.464e^-7	0.093	UPSTREAM CG5614 INTERGENIC
3R	11721982	3R_11721982_INS [dm3] 3R_15896260_INS [dm6]	G	GGCTG	9.562e^-7	0.093	UPSTREAM CG14877 DOWNSTREAM glob1 INTERGENIC
2L	20962196	2L_20962196_SNP [dm3] 2L_20962196_SNP [dm6]	T	C	9.625e^-7	0.093	INTERGENIC
3R	9552551	3R_9552551_DEL [dm3] 3R_13726829_DEL [dm6]	TG	T	9.929e^-7	0.093	INTRON CG34383
X	21946825	X_21946825_INS [dm3] X_22544989_INS [dm6]	G	GG	1.036e^-6	0.093	UPSTREAM CG17599 INTERGENIC
3R	9552554	3R_9552554_DEL [dm3] 3R_13726832_DEL [dm6]	TAAA	T	1.084e^-6	0.093	INTRON CG34383
3R	9552654	3R_9552654_SNP [dm3] 3R_13726932_SNP [dm6]	C	A	1.177e^-6	0.093	INTRON CG34383
X	794279	X_794279_SNP [dm3] X_900246_SNP [dm6]	T	C	1.189e^-6	0.093	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	14384699	3L_14384699_SNP [dm3] 3L_14391599_SNP [dm6]	A	G	1.338e^-6	0.093	INTERGENIC
3L	3427015	3L_3427015_SNP [dm3] 3L_3427015_SNP [dm6]	C	T	1.345e^-6	0.093	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14709622	3R_14709622_SNP [dm3] 3R_18883900_SNP [dm6]	T	C	1.384e^-6	0.093	INTERGENIC
X	15578022	X_15578022_DEL [dm3] X_15683989_DEL [dm6]	ATGTGTCAC	A	1.431e^-6	0.093	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23837085	3R_23837085_SNP [dm3] 3R_28011363_SNP [dm6]	A	G	1.517e^-6	0.093	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14147591	3R_14147591_SNP [dm3] 3R_18321869_SNP [dm6]	T	A	1.606e^-6	0.093	INTRON CG31235
X	15578017	X_15578017_DEL [dm3] X_15683984_DEL [dm6]	TC	T	1.654e^-6	0.093	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23861845	3R_23861845_SNP [dm3] 3R_28036123_SNP [dm6]	C	T	1.782e^-6	0.093	INTRON CG34362
3R	23859298	3R_23859298_SNP [dm3] 3R_28033576_SNP [dm6]	A	C	1.846e^-6	0.093	INTRON CG34362
X	15578098	X_15578098_SNP [dm3] X_15684065_SNP [dm6]	T	G	1.939e^-6	0.093	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9552529	3R_9552529_SNP [dm3] 3R_13726807_SNP [dm6]	T	G	2.076e^-6	0.093	INTRON CG34383
X	7682833	X_7682833_SNP [dm3] X_7788800_SNP [dm6]	A	T	2.137e^-6	0.093	INTERGENIC
X	15578111	X_15578111_SNP [dm3] X_15684078_SNP [dm6]	C	T	2.181e^-6	0.093	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5764164	3R_5764164_DEL [dm3] 3R_9938442_DEL [dm6]	AACTC	A	2.187e^-6	0.093	INTRON Glut4EF	TF binding site mE1_TFBS_cad
3L	5306407	3L_5306407_DEL [dm3] 3L_5313307_DEL [dm6]	AA	A	2.192e^-6	0.093	INTERGENIC
3R	14777575	3R_14777575_SNP [dm3] 3R_18951853_SNP [dm6]	G	A	2.239e^-6	0.093	INTRON CG42613 & 1 other
3R	14775380	3R_14775380_SNP [dm3] 3R_18949658_SNP [dm6]	A	G	2.259e^-6	0.093	UPSTREAM CG42613 & 1 other INTRON CG42613
3L	14386254	3L_14386254_SNP [dm3] 3L_14393154_SNP [dm6]	A	T	2.306e^-6	0.093	INTERGENIC
3R	11323982	3R_11323982_SNP [dm3] 3R_15498260_SNP [dm6]	A	G	2.327e^-6	0.093	INTERGENIC
X	7682834	X_7682834_SNP [dm3] X_7788801_SNP [dm6]	T	G	2.369e^-6	0.093	INTERGENIC
3R	10887670	3R_10887670_SNP [dm3] 3R_15061948_SNP [dm6]	G	T	2.373e^-6	0.093	INTRON dpr9
3R	14700335	3R_14700335_SNP [dm3] 3R_18874613_SNP [dm6]	G	A	2.430e^-6	0.093	UPSTREAM CG14298 INTERGENIC
3L	12107226	3L_12107226_SNP [dm3] 3L_12114126_SNP [dm6]	T	A	2.475e^-6	0.093	INTERGENIC
2L	13956401	2L_13956401_SNP [dm3] 2L_13956401_SNP [dm6]	G	A	2.479e^-6	0.093	DOWNSTREAM Ance-3 INTERGENIC
3R	14704441	3R_14704441_SNP [dm3] 3R_18878719_SNP [dm6]	C	T	2.524e^-6	0.093	INTERGENIC
3R	23902220	3R_23902220_SNP [dm3] 3R_28076498_SNP [dm6]	T	A	2.557e^-6	0.093	INTRON CG34362	TF binding site mE1_TFBS_inv
3L	924500	3L_924500_SNP [dm3] 3L_924500_SNP [dm6]	A	C	2.572e^-6	0.093	INTRON Glut1
2L	18532269	2L_18532269_SNP [dm3] 2L_18532269_SNP [dm6]	C	T	2.588e^-6	0.093	UTR_3_PRIME Pde11 DOWNSTREAM Pde11 & 1 other
X	14259821	X_14259821_SNP [dm3] X_14365788_SNP [dm6]	G	A	2.681e^-6	0.093	INTRON dpr8
2L	20962076	2L_20962076_SNP [dm3] 2L_20962076_SNP [dm6]	G	A	2.702e^-6	0.093	INTERGENIC
3R	14673376	3R_14673376_SNP [dm3] 3R_18847654_SNP [dm6]	G	A	2.731e^-6	0.093	SYNONYMOUS_CODING CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24020069	3R_24020069_SNP [dm3] 3R_28194347_SNP [dm6]	A	T	2.744e^-6	0.093	INTRON CG34354
X	15578013	X_15578013_SNP [dm3] X_15683980_SNP [dm6]	C	T	2.788e^-6	0.093	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17597830	2L_17597830_DEL [dm3] 2L_17597830_DEL [dm6]	TAT	A	2.869e^-6	0.093	INTRON Sytalpha
X	14321291	X_14321291_SNP [dm3] X_14427258_SNP [dm6]	C	A	2.891e^-6	0.093	INTRON dpr8
X	3471683	X_3471683_SNP [dm3] X_3577650_SNP [dm6]	G	T	2.930e^-6	0.093	INTRON AstA-R1
3L	14219632	3L_14219632_DEL [dm3] 3L_14226532_DEL [dm6]	CTA	G	3.079e^-6	0.096	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18503519	3L_18503519_INS [dm3] 3L_18510419_INS [dm6]	G	GGGT	3.206e^-6	0.097	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	14771263	3R_14771263_SNP [dm3] 3R_18945541_SNP [dm6]	T	C	3.252e^-6	0.097	INTRON CG42613
2L	14078423	2L_14078423_SNP [dm3] 2L_14078423_SNP [dm6]	C	A	3.267e^-6	0.097	INTRON nAChRalpha5
3L	8568403	3L_8568403_SNP [dm3] 3L_8575303_SNP [dm6]	G	T	3.403e^-6	0.098	NON_SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12108869	3L_12108869_INS [dm3] 3L_12115769_INS [dm6]	C	CC	3.534e^-6	0.098	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10182386	2R_10182386_DEL [dm3] 2R_14294881_DEL [dm6]	TGCTTTAAAGGGACTAGGCA...	T	3.569e^-6	0.098	UTR_3_PRIME Ih INTRON Ih
3R	14700183	3R_14700183_SNP [dm3] 3R_18874461_SNP [dm6]	G	T	3.573e^-6	0.098	INTERGENIC
3R	16209629	3R_16209629_INS [dm3] 3R_20383907_INS [dm6]	T	TTAATTATTT	3.587e^-6	0.098	INTRON Gfrl
X	11479413	X_11479413_SNP [dm3] X_11585380_SNP [dm6]	C	G	3.603e^-6	0.098	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11545663	3R_11545663_SNP [dm3] 3R_15719941_SNP [dm6]	C	T	3.692e^-6	0.099	INTERGENIC
3R	14674342	3R_14674342_SNP [dm3] 3R_18848620_SNP [dm6]	A	G	3.941e^-6	0.102	UTR_5_PRIME CG18208	TF binding site mE1_TFBS_cad
3R	14748021	3R_14748021_SNP [dm3] 3R_18922299_SNP [dm6]	C	A	3.956e^-6	0.102	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl
3R	11311519	3R_11311519_SNP [dm3] 3R_15485797_SNP [dm6]	T	C	4.172e^-6	0.102	UPSTREAM CG5205 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	14738957	3R_14738957_INS [dm3] 3R_18913235_INS [dm6]	A	AA	4.190e^-6	0.102	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	14706865	3R_14706865_SNP [dm3] 3R_18881143_SNP [dm6]	G	A	4.210e^-6	0.102	INTERGENIC
3R	4127454	3R_4127454_SNP [dm3] 3R_8301732_SNP [dm6]	C	T	4.355e^-6	0.102	UPSTREAM CG9626 DOWNSTREAM nac INTRON mRpL1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	14711340	3R_14711340_SNP [dm3] 3R_18885618_SNP [dm6]	T	C	4.360e^-6	0.102	INTERGENIC
3R	15180912	3R_15180912_INS [dm3] 3R_19355190_INS [dm6]	T	TGTGAGAAACTGATACTCAC...	4.370e^-6	0.102	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	9552603	3R_9552603_SNP [dm3] 3R_13726881_SNP [dm6]	T	A	4.411e^-6	0.102	INTRON CG34383
3R	14700164	3R_14700164_SNP [dm3] 3R_18874442_SNP [dm6]	C	G	4.432e^-6	0.102	INTERGENIC
3R	14748054	3R_14748054_SNP [dm3] 3R_18922332_SNP [dm6]	A	T	4.515e^-6	0.102	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9552585	3R_9552585_SNP [dm3] 3R_13726863_SNP [dm6]	A	T	4.592e^-6	0.102	INTRON CG34383
3R	14771437	3R_14771437_SNP [dm3] 3R_18945715_SNP [dm6]	G	T	4.645e^-6	0.102	INTRON CG42613
2L	4336566	2L_4336566_DEL [dm3] 2L_4336566_DEL [dm6]	AAA	A	4.671e^-6	0.102	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14078418	2L_14078418_SNP [dm3] 2L_14078418_SNP [dm6]	C	T	4.692e^-6	0.102	INTRON nAChRalpha5
3R	9552684	3R_9552684_SNP [dm3] 3R_13726962_SNP [dm6]	G	A	4.716e^-6	0.102	INTRON CG34383
X	15578115	X_15578115_SNP [dm3] X_15684082_SNP [dm6]	G	A	4.756e^-6	0.102	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23841644	3R_23841644_SNP [dm3] 3R_28015922_SNP [dm6]	C	G	4.798e^-6	0.102	INTERGENIC
3R	14750157	3R_14750157_SNP [dm3] 3R_18924435_SNP [dm6]	T	C	4.912e^-6	0.104	INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24041344	3R_24041344_SNP [dm3] 3R_28215622_SNP [dm6]	C	T	5.091e^-6	0.106	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3L	14386240	3L_14386240_SNP [dm3] 3L_14393140_SNP [dm6]	T	A	5.298e^-6	0.107	INTERGENIC
3R	14771444	3R_14771444_SNP [dm3] 3R_18945722_SNP [dm6]	C	A	5.318e^-6	0.107	INTRON CG42613
3R	15886276	3R_15886276_SNP [dm3] 3R_20060554_SNP [dm6]	A	G	5.356e^-6	0.107	UPSTREAM CG4390 INTERGENIC
X	21112429	X_21112429_INS [dm3] X_21241402_INS [dm6]	G	GCTCCGAGGGGATG...	5.452e^-6	0.107	INTRON CG32521
3R	14147693	3R_14147693_SNP [dm3] 3R_18321971_SNP [dm6]	G	T	5.478e^-6	0.107	INTRON CG31235
2L	7595046	2L_7595046_SNP [dm3] 2L_7595046_SNP [dm6]	G	A	5.515e^-6	0.107	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9552594	3R_9552594_SNP [dm3] 3R_13726872_SNP [dm6]	C	A	5.545e^-6	0.107	INTRON CG34383
3R	9391751	3R_9391751_MNP [dm3] 3R_13566029_MNP [dm6]	TTG	AAC	5.690e^-6	0.107	INTERGENIC
3L	14384492	3L_14384492_SNP [dm3] 3L_14391392_SNP [dm6]	C	T	5.842e^-6	0.107	INTERGENIC
3L	15945603	3L_15945603_SNP [dm3] 3L_15952503_SNP [dm6]	C	T	5.889e^-6	0.107	UTR_5_PRIME Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9166429	2L_9166429_SNP [dm3] 2L_9166429_SNP [dm6]	T	C	5.932e^-6	0.107	UTR_5_PRIME CG9586 UPSTREAM tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3867643	3L_3867643_SNP [dm3] 3L_3867643_SNP [dm6]	G	C	5.944e^-6	0.107	INTERGENIC
3R	9552582	3R_9552582_SNP [dm3] 3R_13726860_SNP [dm6]	T	C	5.968e^-6	0.107	INTRON CG34383
3R	9552679	3R_9552679_SNP [dm3] 3R_13726957_SNP [dm6]	G	C	5.976e^-6	0.107	INTRON CG34383
3R	13307854	3R_13307854_SNP [dm3] 3R_17482132_SNP [dm6]	A	G	6.082e^-6	0.107	DOWNSTREAM Dscam3 INTRON Dscam3
2R	3058511	2R_3058511_DEL [dm3] 2R_7171006_DEL [dm6]	CGAGAGAGC	C	6.086e^-6	0.107	INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15893343	3R_15893343_INS [dm3] 3R_20067621_INS [dm6]	A	AG	6.176e^-6	0.107	INTERGENIC
3R	14747758	3R_14747758_INS [dm3] 3R_18922036_INS [dm6]	C	CGATA	6.179e^-6	0.107	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl
3R	14771307	3R_14771307_INS [dm3] 3R_18945585_INS [dm6]	T	TGATAAAAAT	6.211e^-6	0.107	INTRON CG42613
3R	9552618	3R_9552618_SNP [dm3] 3R_13726896_SNP [dm6]	C	T	6.307e^-6	0.107	INTRON CG34383
3R	14812443	3R_14812443_SNP [dm3] 3R_18986721_SNP [dm6]	G	A	6.405e^-6	0.107	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16721651	2L_16721651_SNP [dm3] 2L_16721651_SNP [dm6]	T	G	6.432e^-6	0.107	UPSTREAM Cyt-c-p INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21010648	2L_21010648_SNP [dm3] 2L_21010648_SNP [dm6]	A	T	6.464e^-6	0.107	INTRON CG42238	TF binding site mE1_TFBS_cad
3R	14771328	3R_14771328_SNP [dm3] 3R_18945606_SNP [dm6]	T	C	6.510e^-6	0.107	INTRON CG42613
3R	14775410	3R_14775410_SNP [dm3] 3R_18949688_SNP [dm6]	G	C	6.633e^-6	0.107	UPSTREAM CG42613 & 1 other INTRON CG42613
3R	15424493	3R_15424493_SNP [dm3] 3R_19598771_SNP [dm6]	C	T	6.647e^-6	0.107	INTRON Cpr92A
3R	14147650	3R_14147650_SNP [dm3] 3R_18321928_SNP [dm6]	T	A	6.695e^-6	0.107	INTRON CG31235
3R	14671535	3R_14671535_SNP [dm3] 3R_18845813_SNP [dm6]	A	G	6.753e^-6	0.107	INTRON CG18208
3L	14386253	3L_14386253_SNP [dm3] 3L_14393153_SNP [dm6]	G	A	6.766e^-6	0.107	INTERGENIC
3L	12066022	3L_12066022_INS [dm3] 3L_12072922_INS [dm6]	T	TT	7.001e^-6	0.109	INTRON Sema-5c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	14768877	3R_14768877_SNP [dm3] 3R_18943155_SNP [dm6]	C	T	7.004e^-6	0.109	INTRON CG42613
X	15578117	X_15578117_SNP [dm3] X_15684084_SNP [dm6]	G	C	7.126e^-6	0.11	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15579093	3R_15579093_INS [dm3] 3R_19753371_INS [dm6]	T	TT	7.252e^-6	0.11	INTRON GluClalpha
3L	12107229	3L_12107229_SNP [dm3] 3L_12114129_SNP [dm6]	A	T	7.292e^-6	0.11	INTERGENIC
3R	11721999	3R_11721999_SNP [dm3] 3R_15896277_SNP [dm6]	C	T	7.308e^-6	0.11	UPSTREAM CG14877 DOWNSTREAM glob1 INTERGENIC
3R	9028810	3R_9028810_SNP [dm3] 3R_13203088_SNP [dm6]	A	G	7.516e^-6	0.11	INTERGENIC
3R	11686479	3R_11686479_SNP [dm3] 3R_15860757_SNP [dm6]	A	G	7.568e^-6	0.11	NON_SYNONYMOUS_CODING CG9632 INTRON CG31183 & 1 other
3R	14705186	3R_14705186_SNP [dm3] 3R_18879464_SNP [dm6]	C	G	7.693e^-6	0.11	INTERGENIC
3R	9552578	3R_9552578_SNP [dm3] 3R_13726856_SNP [dm6]	T	C	7.701e^-6	0.11	INTRON CG34383
3L	14384493	3L_14384493_SNP [dm3] 3L_14391393_SNP [dm6]	G	C	7.727e^-6	0.11	INTERGENIC
2L	9166421	2L_9166421_SNP [dm3] 2L_9166421_SNP [dm6]	G	T	7.733e^-6	0.11	UTR_5_PRIME CG9586 UPSTREAM tai DOWNSTREAM CG13108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1141073	2R_1141073_INS [dm3] 2R_5253568_INS [dm6]	G	GG	7.867e^-6	0.11	UPSTREAM CR41443 INTERGENIC
3L	10396517	3L_10396517_SNP [dm3] 3L_10403417_SNP [dm6]	C	T	7.887e^-6	0.11	INTERGENIC
2L	7419649	2L_7419649_SNP [dm3] 2L_7419649_SNP [dm6]	G	A	7.898e^-6	0.11	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	13288297	2L_13288297_SNP [dm3] 2L_13288297_SNP [dm6]	C	T	7.929e^-6	0.11	SPLICE_SITE_REGION Uvrag DOWNSTREAM CR44972 INTRON Uvrag
3L	8728575	3L_8728575_SNP [dm3] 3L_8735475_SNP [dm6]	A	T	8.027e^-6	0.111	INTRON Prm
3R	14718286	3R_14718286_SNP [dm3] 3R_18892564_SNP [dm6]	G	C	8.342e^-6	0.111	INTERGENIC
3L	12109679	3L_12109679_SNP [dm3] 3L_12116579_SNP [dm6]	T	A	8.449e^-6	0.111	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	8.452e^-6	0.111	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14707338	3R_14707338_SNP [dm3] 3R_18881616_SNP [dm6]	A	T	8.485e^-6	0.111	INTERGENIC
X	14321287	X_14321287_SNP [dm3] X_14427254_SNP [dm6]	G	A	8.521e^-6	0.111	INTRON dpr8
3R	9552536	3R_9552536_SNP [dm3] 3R_13726814_SNP [dm6]	T	C	8.547e^-6	0.111	INTRON CG34383
3R	14704248	3R_14704248_SNP [dm3] 3R_18878526_SNP [dm6]	T	C	8.571e^-6	0.111	INTERGENIC
3R	23873813	3R_23873813_SNP [dm3] 3R_28048091_SNP [dm6]	G	C	8.633e^-6	0.111	INTRON CG34362
3L	18329276	3L_18329276_SNP [dm3] 3L_18336176_SNP [dm6]	T	A	8.713e^-6	0.111	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14884999	3R_14884999_SNP [dm3] 3R_19059277_SNP [dm6]	T	A	8.716e^-6	0.111	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21064263	2L_21064263_SNP [dm3] 2L_21064263_SNP [dm6]	T	C	8.815e^-6	0.111	INTRON CG9265	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	12109631	3L_12109631_INS [dm3] 3L_12116531_INS [dm6]	A	TG	8.828e^-6	0.111	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15892162	3R_15892162_SNP [dm3] 3R_20066440_SNP [dm6]	A	G	8.836e^-6	0.111	INTERGENIC
3R	11606267	3R_11606267_SNP [dm3] 3R_15780545_SNP [dm6]	T	A	8.976e^-6	0.112	NON_SYNONYMOUS_CODING CG5614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7818076	3R_7818076_SNP [dm3] 3R_11992354_SNP [dm6]	A	T	8.992e^-6	0.112	INTRON mfas
3R	9552605	3R_9552605_SNP [dm3] 3R_13726883_SNP [dm6]	A	G	9.204e^-6	0.114	INTRON CG34383
2L	19549387	2L_19549387_INS [dm3] 2L_19549387_INS [dm6]	T	TGAAT	9.295e^-6	0.114	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3R	14690600	3R_14690600_SNP [dm3] 3R_18864878_SNP [dm6]	G	T	9.588e^-6	0.115	INTERGENIC
3R	14671972	3R_14671972_SNP [dm3] 3R_18846250_SNP [dm6]	G	A	9.670e^-6	0.115	INTRON CG18208
3R	14771374	3R_14771374_SNP [dm3] 3R_18945652_SNP [dm6]	G	C	9.674e^-6	0.115	INTRON CG42613
3R	14742935	3R_14742935_SNP [dm3] 3R_18917213_SNP [dm6]	G	T	9.690e^-6	0.115	INTRON Xrp1	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	19681220	3L_19681220_SNP [dm3] 3L_19688120_SNP [dm6]	G	T	9.724e^-6	0.115	UPSTREAM CG8765 INTRON Gbeta76C	TF binding site mE1_TFBS_cad
2R	2573261	2R_2573261_SNP [dm3] 2R_6685756_SNP [dm6]	C	T	9.806e^-6	0.116	SYNONYMOUS_CODING Tdc2 INTRON CG9422
3R	3225067	3R_3225067_SNP [dm3] 3R_7399345_SNP [dm6]	A	C	9.913e^-6	0.116	INTERGENIC
3R	14771503	3R_14771503_SNP [dm3] 3R_18945781_SNP [dm6]	G	A	1.034e^-5	0.117	INTRON CG42613
3R	14727310	3R_14727310_SNP [dm3] 3R_18901588_SNP [dm6]	T	A	1.043e^-5	0.117	DOWNSTREAM CG14294 & 2 others INTERGENIC
2L	14078383	2L_14078383_SNP [dm3] 2L_14078383_SNP [dm6]	G	A	1.048e^-5	0.117	INTRON nAChRalpha5
3R	10611246	3R_10611246_SNP [dm3] 3R_14785524_SNP [dm6]	G	A	1.050e^-5	0.117	INTRON jvl
3R	14516222	3R_14516222_SNP [dm3] 3R_18690500_SNP [dm6]	T	A	1.054e^-5	0.117	INTRON Muc91C
2L	7418985	2L_7418985_DEL [dm3] 2L_7418985_DEL [dm6]	TAAATATATT	T	1.056e^-5	0.117	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15892199	3R_15892199_SNP [dm3] 3R_20066477_SNP [dm6]	T	G	1.059e^-5	0.117	INTERGENIC
3R	11311526	3R_11311526_SNP [dm3] 3R_15485804_SNP [dm6]	G	T	1.059e^-5	0.117	UPSTREAM CG5205 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	21017151	2L_21017151_SNP [dm3] 2L_21017151_SNP [dm6]	C	A	1.061e^-5	0.117	INTRON CG42238
X	18370050	X_18370050_INS [dm3] X_18476017_INS [dm6]	T	TA	1.065e^-5	0.117	INTRON CG32547	TF binding site mE1_TFBS_HSA
3L	8728599	3L_8728599_SNP [dm3] 3L_8735499_SNP [dm6]	C	A	1.072e^-5	0.117	INTRON Prm
3R	20511927	3R_20511927_SNP [dm3] 3R_24686205_SNP [dm6]	A	T	1.073e^-5	0.117	INTRON slo
3R	14722836	3R_14722836_SNP [dm3] 3R_18897114_SNP [dm6]	A	G	1.078e^-5	0.117	INTERGENIC
3L	4625673	3L_4625673_DEL [dm3] 3L_4625673_DEL [dm6]	TATGAAAAATGTTAATTTTG...	T	1.084e^-5	0.117	DOWNSTREAM CR45438 INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14678138	3R_14678138_SNP [dm3] 3R_18852416_SNP [dm6]	T	G	1.098e^-5	0.117	UPSTREAM CG31226 INTERGENIC
2L	9166394	2L_9166394_SNP [dm3] 2L_9166394_SNP [dm6]	G	C	1.108e^-5	0.117	UTR_5_PRIME CG9586 UPSTREAM tai DOWNSTREAM CG13108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14771381	3R_14771381_DEL [dm3] 3R_18945659_DEL [dm6]	AG	A	1.111e^-5	0.117	INTRON CG42613
3R	15881347	3R_15881347_SNP [dm3] 3R_20055625_SNP [dm6]	G	C	1.114e^-5	0.117	DOWNSTREAM CG4390 INTRON CG17193
3L	8570467	3L_8570467_SNP [dm3] 3L_8577367_SNP [dm6]	T	C	1.146e^-5	0.119	UTR_5_PRIME CG43078	TF binding site mE1_TFBS_HSA
3R	14778500	3R_14778500_DEL [dm3] 3R_18952778_DEL [dm6]	CC	C	1.146e^-5	0.119	INTRON CG42613 & 1 other
3R	17827034	3R_17827034_SNP [dm3] 3R_22001312_SNP [dm6]	C	T	1.147e^-5	0.119	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
3R	14771367	3R_14771367_SNP [dm3] 3R_18945645_SNP [dm6]	A	C	1.161e^-5	0.119	INTRON CG42613
3L	18329829	3L_18329829_INS [dm3] 3L_18336729_INS [dm6]	T	TT	1.167e^-5	0.119	INTERGENIC
3R	11606270	3R_11606270_SNP [dm3] 3R_15780548_SNP [dm6]	G	A	1.173e^-5	0.119	SYNONYMOUS_CODING CG5614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	796455	X_796455_SNP [dm3] X_902422_SNP [dm6]	T	A	1.177e^-5	0.119	INTRON CG43867	TF binding site BDTNP1_TFBS_z
2L	20962248	2L_20962248_SNP [dm3] 2L_20962248_SNP [dm6]	A	G	1.183e^-5	0.119	INTERGENIC
3R	14738993	3R_14738993_SNP [dm3] 3R_18913271_SNP [dm6]	T	C	1.188e^-5	0.119	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	24026500	3R_24026500_SNP [dm3] 3R_28200778_SNP [dm6]	A	C	1.214e^-5	0.121	INTRON CG34354
3R	10128934	3R_10128934_SNP [dm3] 3R_14303212_SNP [dm6]	A	T	1.225e^-5	0.121	NON_SYNONYMOUS_CODING CG3259 DOWNSTREAM CG12207	TF binding site mE1_TFBS_cad
3R	14776463	3R_14776463_SNP [dm3] 3R_18950741_SNP [dm6]	G	A	1.227e^-5	0.121	INTRON CG42613 & 1 other
3R	14710896	3R_14710896_SNP [dm3] 3R_18885174_SNP [dm6]	A	C	1.241e^-5	0.121	INTERGENIC
3R	13307845	3R_13307845_SNP [dm3] 3R_17482123_SNP [dm6]	T	C	1.248e^-5	0.121	DOWNSTREAM Dscam3 INTRON Dscam3
3R	14771517	3R_14771517_INS [dm3] 3R_18945795_INS [dm6]	T	TGCCTTGAAT	1.250e^-5	0.121	INTRON CG42613
3R	18819281	3R_18819281_DEL [dm3] 3R_22993559_DEL [dm6]	ACTGAGATGTCAGCTCTCTT...	A	1.252e^-5	0.121	UTR_5_PRIME Nha2 UPSTREAM Nha2 INTRON Nha2
3L	12525909	3L_12525909_SNP [dm3] 3L_12532809_SNP [dm6]	G	T	1.262e^-5	0.121	INTRON Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	14782259	3R_14782259_DEL [dm3] 3R_18956537_DEL [dm6]	CGTGTGTGTGT...	C	1.267e^-5	0.121	INTRON CG42613 & 1 other
3R	24026514	3R_24026514_DEL [dm3] 3R_28200792_DEL [dm6]	ATGA	A	1.269e^-5	0.121	INTRON CG34354
X	789165	X_789165_DEL [dm3] X_895132_DEL [dm6]	TA	T	1.276e^-5	0.121	UTR_3_PRIME CG11663 INTRON CG43867
3L	17744251	3L_17744251_SNP [dm3] 3L_17751151_SNP [dm6]	C	T	1.295e^-5	0.122	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3R	14750731	3R_14750731_SNP [dm3] 3R_18925009_SNP [dm6]	C	A	1.298e^-5	0.122	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	5619049	X_5619049_DEL [dm3] X_5725016_DEL [dm6]	TATTCAT	T	1.326e^-5	0.123	INTRON CG32758
3R	15891270	3R_15891270_SNP [dm3] 3R_20065548_SNP [dm6]	C	T	1.333e^-5	0.123	INTERGENIC
2R	18206066	2R_18206066_DEL [dm3] 2R_22318561_DEL [dm6]	AGCAACAACA	A	1.336e^-5	0.123	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16875232	3R_16875232_SNP [dm3] 3R_21049510_SNP [dm6]	A	C	1.360e^-5	0.124	UPSTREAM CG7079 DOWNSTREAM CG17279 INTERGENIC
3R	14703242	3R_14703242_SNP [dm3] 3R_18877520_SNP [dm6]	T	C	1.379e^-5	0.124	DOWNSTREAM CG14298 INTERGENIC
3R	11606282	3R_11606282_SNP [dm3] 3R_15780560_SNP [dm6]	A	G	1.386e^-5	0.124	SYNONYMOUS_CODING CG5614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19681153	3L_19681153_SNP [dm3] 3L_19688053_SNP [dm6]	A	G	1.398e^-5	0.124	UPSTREAM CG8765 INTRON Gbeta76C
3L	10523798	3L_10523798_INS [dm3] 3L_10530698_INS [dm6]	A	AA	1.399e^-5	0.124	INTRON A2bp1
3R	22730023	3R_22730023_DEL [dm3] 3R_26904301_DEL [dm6]	TT	T	1.416e^-5	0.124	INTRON T48	regulatory region REDfly_CRMs
3R	11129087	3R_11129087_SNP [dm3] 3R_15303365_SNP [dm6]	G	A	1.420e^-5	0.124	INTRON Tm1
3L	9749384	3L_9749384_SNP [dm3] 3L_9756284_SNP [dm6]	G	A	1.440e^-5	0.124	INTRON CG42268
2R	1216328	2R_1216328_INS [dm3] 2R_5328823_INS [dm6]	G	GTTGTGCAGTAGG...	1.443e^-5	0.124	INTRON sxc
3L	9749386	3L_9749386_SNP [dm3] 3L_9756286_SNP [dm6]	G	A	1.459e^-5	0.124	INTRON CG42268
3R	15887041	3R_15887041_SNP [dm3] 3R_20061319_SNP [dm6]	A	G	1.470e^-5	0.124	INTERGENIC
2R	19616121	2R_19616121_DEL [dm3] 2R_23728598_DEL [dm6]	GG	A	1.470e^-5	0.124	INTRON Sesn
3R	14607532	3R_14607532_SNP [dm3] 3R_18781810_SNP [dm6]	C	T	1.471e^-5	0.124	INTRON CG7720
3R	24761192	3R_24761192_SNP [dm3] 3R_28935470_SNP [dm6]	A	G	1.472e^-5	0.124	INTRON CG14521
3R	15876056	3R_15876056_SNP [dm3] 3R_20050334_SNP [dm6]	T	A	1.475e^-5	0.124	INTRON CG17193
3L	11756901	3L_11756901_SNP [dm3] 3L_11763801_SNP [dm6]	A	G	1.480e^-5	0.124	INTRON CG6024
3L	14381619	3L_14381619_SNP [dm3] 3L_14388519_SNP [dm6]	A	C	1.489e^-5	0.124	INTERGENIC
3R	9552513	3R_9552513_DEL [dm3] 3R_13726791_DEL [dm6]	AA	A	1.502e^-5	0.124	INTRON CG34383
3L	14675527	3L_14675527_DEL [dm3] 3L_14682427_DEL [dm6]	ATTTTTCA	A	1.502e^-5	0.124	INTRON ome
3R	14135150	3R_14135150_SNP [dm3] 3R_18309428_SNP [dm6]	C	T	1.519e^-5	0.124	UTR_5_PRIME PKD
2R	1126712	2R_1126712_SNP [dm3] 2R_5239207_SNP [dm6]	G	T	1.523e^-5	0.124	INTRON Nipped-A	transposable element FlyBase
3R	9552678	3R_9552678_SNP [dm3] 3R_13726956_SNP [dm6]	T	A	1.523e^-5	0.124	INTRON CG34383
3R	14678502	3R_14678502_SNP [dm3] 3R_18852780_SNP [dm6]	T	G	1.524e^-5	0.124	UPSTREAM CG31226 INTERGENIC
3R	14771223	3R_14771223_DEL [dm3] 3R_18945501_DEL [dm6]	TGA	T	1.525e^-5	0.124	INTRON CG42613
3R	14771257	3R_14771257_SNP [dm3] 3R_18945535_SNP [dm6]	T	A	1.525e^-5	0.124	INTRON CG42613
3R	9552634	3R_9552634_DEL [dm3] 3R_13726912_DEL [dm6]	TTGCCACTTGCTGCGACTC...	G	1.529e^-5	0.124	INTRON CG34383
3R	14771218	3R_14771218_SNP [dm3] 3R_18945496_SNP [dm6]	A	G	1.536e^-5	0.124	INTRON CG42613
3R	14677576	3R_14677576_SNP [dm3] 3R_18851854_SNP [dm6]	C	A	1.544e^-5	0.124	UPSTREAM CR45633 & 1 other INTERGENIC
2R	3657739	2R_3657739_INS [dm3] 2R_7770234_INS [dm6]	A	ATGTAGATACATTCA...	1.551e^-5	0.124	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20363726	3R_20363726_SNP [dm3] 3R_24538004_SNP [dm6]	T	G	1.560e^-5	0.124	INTRON CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15892179	3R_15892179_SNP [dm3] 3R_20066457_SNP [dm6]	A	T	1.566e^-5	0.124	INTERGENIC
3R	15245946	3R_15245946_SNP [dm3] 3R_19420224_SNP [dm6]	C	T	1.576e^-5	0.124	INTRON CG31221
3R	9164247	3R_9164247_DEL [dm3] 3R_13338525_DEL [dm6]	CG	C	1.578e^-5	0.124	UTR_5_PRIME PK2-R1
3R	24820700	3R_24820700_SNP [dm3] 3R_28994978_SNP [dm6]	A	G	1.584e^-5	0.124	SYNONYMOUS_CODING wat	TF binding site mE1_TFBS_HSA
3R	14771354	3R_14771354_SNP [dm3] 3R_18945632_SNP [dm6]	C	T	1.586e^-5	0.124	INTRON CG42613
3L	17738862	3L_17738862_SNP [dm3] 3L_17745762_SNP [dm6]	G	C	1.590e^-5	0.124	NON_SYNONYMOUS_CODING CG6034 INTRON Ccn
3R	15890913	3R_15890913_SNP [dm3] 3R_20065191_SNP [dm6]	T	C	1.603e^-5	0.124	INTERGENIC
3L	2286767	3L_2286767_DEL [dm3] 3L_2286767_DEL [dm6]	AGCGTGGA	A	1.608e^-5	0.124	INTRON MsR2
3R	15357985	3R_15357985_DEL [dm3] 3R_19532263_DEL [dm6]	ATAATTAAGAGAAATGTTCC...	A	1.619e^-5	0.124	INTRON Dys
3R	22722889	3R_22722889_SNP [dm3] 3R_26897167_SNP [dm6]	C	G	1.621e^-5	0.124	INTRON T48	regulatory region REDfly_CRMs
3L	12107232	3L_12107232_SNP [dm3] 3L_12114132_SNP [dm6]	G	C	1.624e^-5	0.124	INTERGENIC
3R	10901277	3R_10901277_SNP [dm3] 3R_15075555_SNP [dm6]	T	A	1.624e^-5	0.124	INTRON dpr9
2R	10223310	2R_10223310_DEL [dm3] 2R_14335805_DEL [dm6]	TTGGGTAGCTT...	T	1.660e^-5	0.126	INTRON Shroom
3R	15886409	3R_15886409_DEL [dm3] 3R_20060687_DEL [dm6]	GCAGGGGATTTGGGTTGCTT...	G	1.661e^-5	0.126	UPSTREAM CG4390 INTERGENIC
3R	16588466	3R_16588466_SNP [dm3] 3R_20762744_SNP [dm6]	G	T	1.669e^-5	0.126	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	12109781	3L_12109781_SNP [dm3] 3L_12116681_SNP [dm6]	T	C	1.697e^-5	0.128	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5050873	3R_5050873_INS [dm3] 3R_9225151_INS [dm6]	A	AA	1.720e^-5	0.129	INTRON pum
3L	14381427	3L_14381427_SNP [dm3] 3L_14388327_SNP [dm6]	A	G	1.723e^-5	0.129	INTERGENIC
3L	8728573	3L_8728573_SNP [dm3] 3L_8735473_SNP [dm6]	C	T	1.728e^-5	0.129	INTRON Prm
3R	14768058	3R_14768058_SNP [dm3] 3R_18942336_SNP [dm6]	A	G	1.753e^-5	0.13	INTRON CG42613
3R	9385682	3R_9385682_SNP [dm3] 3R_13559960_SNP [dm6]	T	C	1.775e^-5	0.13	INTERGENIC
3R	16384693	3R_16384693_SNP [dm3] 3R_20558971_SNP [dm6]	C	T	1.782e^-5	0.13	SYNONYMOUS_CODING CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10581323	3R_10581323_SNP [dm3] 3R_14755601_SNP [dm6]	C	T	1.787e^-5	0.13	INTRON jvl
2R	19143280	2R_19143280_SNP [dm3] 2R_23255757_SNP [dm6]	G	T	1.788e^-5	0.13	INTERGENIC
3R	16817208	3R_16817208_INS [dm3] 3R_20991486_INS [dm6]	C	CCTC	1.804e^-5	0.131	INTRON Calx
3R	9391217	3R_9391217_SNP [dm3] 3R_13565495_SNP [dm6]	G	A	1.824e^-5	0.131	INTERGENIC
3R	14670011	3R_14670011_SNP [dm3] 3R_18844289_SNP [dm6]	T	A	1.833e^-5	0.131	INTRON CG18208
X	15588738	X_15588738_SNP [dm3] X_15694705_SNP [dm6]	A	C	1.841e^-5	0.131	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	21050474	2L_21050474_SNP [dm3] 2L_21050474_SNP [dm6]	T	G	1.850e^-5	0.131	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12384144	3L_12384144_SNP [dm3] 3L_12391044_SNP [dm6]	C	A	1.857e^-5	0.131	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14998334	3R_14998334_SNP [dm3] 3R_19172612_SNP [dm6]	C	A	1.858e^-5	0.131	INTERGENIC
3R	20511418	3R_20511418_SNP [dm3] 3R_24685696_SNP [dm6]	T	A	1.867e^-5	0.131	INTRON slo
3R	15894982	3R_15894982_SNP [dm3] 3R_20069260_SNP [dm6]	T	C	1.873e^-5	0.131	INTERGENIC
2L	3216512	2L_3216512_SNP [dm3] 2L_3216512_SNP [dm6]	C	A	1.873e^-5	0.131	INTERGENIC
2L	12280873	2L_12280873_SNP [dm3] 2L_12280873_SNP [dm6]	G	T	1.874e^-5	0.131	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14978887	3R_14978887_SNP [dm3] 3R_19153165_SNP [dm6]	T	C	1.886e^-5	0.131	DOWNSTREAM CG11779 INTRON CG5835
2R	2847935	2R_2847935_DEL [dm3] 2R_6960430_DEL [dm6]	CGCA	C	1.895e^-5	0.131	INTRON mim & 1 other
3R	24155852	3R_24155852_SNP [dm3] 3R_28330130_SNP [dm6]	C	T	1.899e^-5	0.131	INTRON larp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl
3R	17159864	3R_17159864_SNP [dm3] 3R_21334142_SNP [dm6]	A	G	1.906e^-5	0.131	INTRON CG16791
3R	4403113	3R_4403113_SNP [dm3] 3R_8577391_SNP [dm6]	G	T	1.908e^-5	0.131	UPSTREAM 5-HT2B INTERGENIC	TF binding site mE1_TFBS_cad
3R	11533586	3R_11533586_SNP [dm3] 3R_15707864_SNP [dm6]	G	A	1.912e^-5	0.131	UTR_3_PRIME CG5404	TF binding site mE1_TFBS_sbb
3R	9552579	3R_9552579_SNP [dm3] 3R_13726857_SNP [dm6]	A	T	1.923e^-5	0.131	INTRON CG34383
3R	14742355	3R_14742355_SNP [dm3] 3R_18916633_SNP [dm6]	A	G	1.941e^-5	0.131	INTRON Xrp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	21966105	3R_21966105_INS [dm3] 3R_26140383_INS [dm6]	T	TAAGGATTGGCCTAGAT...	1.942e^-5	0.131	INTERGENIC
3R	15893334	3R_15893334_SNP [dm3] 3R_20067612_SNP [dm6]	A	T	1.942e^-5	0.131	INTERGENIC
3R	15875928	3R_15875928_SNP [dm3] 3R_20050206_SNP [dm6]	T	G	1.951e^-5	0.131	INTRON CG17193
2R	2903153	2R_2903153_SNP [dm3] 2R_7015648_SNP [dm6]	T	G	1.962e^-5	0.131	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_twi
3R	14147600	3R_14147600_SNP [dm3] 3R_18321878_SNP [dm6]	A	C	1.963e^-5	0.131	INTRON CG31235
3R	6647890	3R_6647890_INS [dm3] 3R_10822168_INS [dm6]	G	GG	2.005e^-5	0.133	INTERGENIC
X	14260439	X_14260439_SNP [dm3] X_14366406_SNP [dm6]	T	C	2.024e^-5	0.134	INTRON dpr8
3R	14601962	3R_14601962_MNP [dm3] 3R_18776240_MNP [dm6]	TTT	CAC	2.051e^-5	0.135	INTRON CG7720
3L	14381456	3L_14381456_SNP [dm3] 3L_14388356_SNP [dm6]	G	C	2.088e^-5	0.137	INTERGENIC
3R	15879766	3R_15879766_SNP [dm3] 3R_20054044_SNP [dm6]	G	C	2.093e^-5	0.137	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15107051	3R_15107051_SNP [dm3] 3R_19281329_SNP [dm6]	C	A	2.094e^-5	0.137	INTERGENIC
3R	15004250	3R_15004250_SNP [dm3] 3R_19178528_SNP [dm6]	C	T	2.110e^-5	0.137	SYNONYMOUS_CODING CG5555 DOWNSTREAM CG14282
2R	2556020	2R_2556020_SNP [dm3] 2R_6668515_SNP [dm6]	G	T	2.144e^-5	0.138	NON_SYNONYMOUS_CODING CG15908 UPSTREAM CG9410 DOWNSTREAM Adf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23460862	3R_23460862_SNP [dm3] 3R_27635140_SNP [dm6]	T	C	2.155e^-5	0.138	DOWNSTREAM Tusp INTRON CG5611	TF binding site mE1_TFBS_HSA
3R	10901295	3R_10901295_SNP [dm3] 3R_15075573_SNP [dm6]	T	A	2.164e^-5	0.138	INTRON dpr9
3R	14712818	3R_14712818_SNP [dm3] 3R_18887096_SNP [dm6]	C	A	2.169e^-5	0.138	INTERGENIC
3R	13614305	3R_13614305_SNP [dm3] 3R_17788583_SNP [dm6]	G	T	2.171e^-5	0.138	INTRON CG43102
3R	14974159	3R_14974159_SNP [dm3] 3R_19148437_SNP [dm6]	G	A	2.173e^-5	0.138	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
X	8016611	X_8016611_SNP [dm3] X_8122578_SNP [dm6]	T	A	2.185e^-5	0.138	INTRON cyr
3R	14743638	3R_14743638_SNP [dm3] 3R_18917916_SNP [dm6]	C	T	2.194e^-5	0.138	UPSTREAM Xrp1 INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21058865	2L_21058865_SNP [dm3] 2L_21058865_SNP [dm6]	A	T	2.200e^-5	0.138	DOWNSTREAM Itgbetanu INTRON CG9265
3R	15875755	3R_15875755_SNP [dm3] 3R_20050033_SNP [dm6]	G	A	2.200e^-5	0.138	INTRON CG17193
2R	3328665	2R_3328665_SNP [dm3] 2R_7441160_SNP [dm6]	C	T	2.205e^-5	0.138	SYNONYMOUS_CODING CG11123	TF binding site mE1_TFBS_sens
3R	11606571	3R_11606571_SNP [dm3] 3R_15780849_SNP [dm6]	G	C	2.222e^-5	0.138	NON_SYNONYMOUS_CODING CG5614
3R	20337761	3R_20337761_SNP [dm3] 3R_24512039_SNP [dm6]	T	A	2.224e^-5	0.138	UTR_3_PRIME nAChRbeta2 INTRON nAChRbeta2
3R	11670515	3R_11670515_SNP [dm3] 3R_15844793_SNP [dm6]	T	C	2.228e^-5	0.138	DOWNSTREAM spn-E INTRON cv-d
2R	17576301	2R_17576301_SNP [dm3] 2R_21688796_SNP [dm6]	A	G	2.242e^-5	0.138	UTR_5_PRIME CG10307 UPSTREAM CG10307 & 1 other	TF binding site mE1_TFBS_Trl
X	9178738	X_9178738_SNP [dm3] X_9284705_SNP [dm6]	G	C	2.242e^-5	0.138	UTR_5_PRIME lz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl
3R	24041355	3R_24041355_SNP [dm3] 3R_28215633_SNP [dm6]	T	C	2.244e^-5	0.138	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	10879949	3R_10879949_SNP [dm3] 3R_15054227_SNP [dm6]	C	A	2.246e^-5	0.138	DOWNSTREAM dpr9 INTERGENIC
3L	11757062	3L_11757062_SNP [dm3] 3L_11763962_SNP [dm6]	G	A	2.260e^-5	0.138	INTRON CG6024	TF binding site BDTNP1_TFBS_dl
3R	20511438	3R_20511438_SNP [dm3] 3R_24685716_SNP [dm6]	T	C	2.273e^-5	0.138	INTRON slo
3R	11606517	3R_11606517_SNP [dm3] 3R_15780795_SNP [dm6]	G	C	2.277e^-5	0.138	NON_SYNONYMOUS_CODING CG5614
X	19945377	X_19945377_INS [dm3] X_20051344_INS [dm6]	A	ACA	2.292e^-5	0.138	UTR_5_PRIME CG9570 INTRON Dop2R	TF binding site mE1_TFBS_chinmo
2L	2937113	2L_2937113_SNP [dm3] 2L_2937113_SNP [dm6]	G	A	2.296e^-5	0.138	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6770471	2L_6770471_SNP [dm3] 2L_6770471_SNP [dm6]	A	G	2.296e^-5	0.138	SYNONYMOUS_CODING CG11321
3R	14710908	3R_14710908_SNP [dm3] 3R_18885186_SNP [dm6]	T	C	2.298e^-5	0.138	INTERGENIC
2R	17415564	2R_17415564_SNP [dm3] 2R_21528059_SNP [dm6]	C	T	2.307e^-5	0.138	INTRON Egfr
2R	11773234	2R_11773234_DEL [dm3] 2R_15885729_DEL [dm6]	TTGGTTTGATTT...	T	2.329e^-5	0.138	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	19496052	X_19496052_INS [dm3] X_19602019_INS [dm6]	T	TTT	2.331e^-5	0.138	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15135259	3R_15135259_DEL [dm3] 3R_19309537_DEL [dm6]	GG	G	2.351e^-5	0.138	INTRON Dl
3R	9388647	3R_9388647_SNP [dm3] 3R_13562925_SNP [dm6]	G	A	2.357e^-5	0.138	INTERGENIC
3R	15882866	3R_15882866_SNP [dm3] 3R_20057144_SNP [dm6]	G	A	2.362e^-5	0.138	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5757197	3L_5757197_DEL [dm3] 3L_5764097_DEL [dm6]	CA	C	2.365e^-5	0.138	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837b & 2 others INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	23055168	3R_23055168_SNP [dm3] 3R_27229446_SNP [dm6]	G	A	2.371e^-5	0.138	UTR_5_PRIME CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064
3L	20213165	3L_20213165_SNP [dm3] 3L_20220065_SNP [dm6]	G	C	2.372e^-5	0.138	NON_SYNONYMOUS_CODING CG6933 INTRON CG6933
3R	9044773	3R_9044773_SNP [dm3] 3R_13219051_SNP [dm6]	T	C	2.387e^-5	0.139	DOWNSTREAM CG8476 INTERGENIC
3R	9443686	3R_9443686_INS [dm3] 3R_13617964_INS [dm6]	A	AGTTTCG	2.393e^-5	0.139	EXON CR45680
3R	14682336	3R_14682336_SNP [dm3] 3R_18856614_SNP [dm6]	G	A	2.428e^-5	0.139	INTERGENIC
X	15588783	X_15588783_SNP [dm3] X_15694750_SNP [dm6]	T	G	2.436e^-5	0.139	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4725517	3L_4725517_SNP [dm3] 3L_4725517_SNP [dm6]	C	A	2.442e^-5	0.139	INTRON RhoGEF64C
3R	20511612	3R_20511612_SNP [dm3] 3R_24685890_SNP [dm6]	A	G	2.444e^-5	0.139	INTRON slo
3R	24660301	3R_24660301_SNP [dm3] 3R_28834579_SNP [dm6]	C	G	2.444e^-5	0.139	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	11686463	3R_11686463_SNP [dm3] 3R_15860741_SNP [dm6]	C	G	2.450e^-5	0.139	NON_SYNONYMOUS_CODING CG9632 INTRON CG31183 & 1 other
3L	10682778	3L_10682778_SNP [dm3] 3L_10689678_SNP [dm6]	C	A	2.467e^-5	0.14	UTR_3_PRIME simj DOWNSTREAM simj
3R	14536197	3R_14536197_DEL [dm3] 3R_18710475_DEL [dm6]	TACAT	T	2.508e^-5	0.141	INTRON VAChT & 1 other
3R	15892009	3R_15892009_SNP [dm3] 3R_20066287_SNP [dm6]	C	T	2.527e^-5	0.141	INTERGENIC
3R	15892122	3R_15892122_SNP [dm3] 3R_20066400_SNP [dm6]	T	A	2.528e^-5	0.141	INTERGENIC
3R	14843269	3R_14843269_SNP [dm3] 3R_19017547_SNP [dm6]	T	G	2.540e^-5	0.141	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23888324	3R_23888324_SNP [dm3] 3R_28062602_SNP [dm6]	A	C	2.549e^-5	0.141	INTRON CG34362
X	16438933	X_16438933_SNP [dm3] X_16544900_SNP [dm6]	C	T	2.552e^-5	0.141	NON_SYNONYMOUS_CODING CG9902	TF binding site mE1_TFBS_HSA
3L	8728600	3L_8728600_SNP [dm3] 3L_8735500_SNP [dm6]	C	A	2.556e^-5	0.141	INTRON Prm
3L	18552944	3L_18552944_DEL [dm3] 3L_18559844_DEL [dm6]	ACTTTG	A	2.559e^-5	0.141	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9385547	3R_9385547_SNP [dm3] 3R_13559825_SNP [dm6]	C	T	2.567e^-5	0.141	INTERGENIC
2L	13150927	2L_13150927_SNP [dm3] 2L_13150927_SNP [dm6]	C	T	2.573e^-5	0.141	INTERGENIC
3L	19681200	3L_19681200_SNP [dm3] 3L_19688100_SNP [dm6]	T	C	2.577e^-5	0.141	UPSTREAM CG8765 INTRON Gbeta76C
3R	17330256	3R_17330256_SNP [dm3] 3R_21504534_SNP [dm6]	C	T	2.586e^-5	0.141	INTRON C15	TF binding site mE1_TFBS_chinmo
3R	24028277	3R_24028277_DEL [dm3] 3R_28202555_DEL [dm6]	AGGGTGCATGTCGAAGGAAA...	A	2.593e^-5	0.141	INTRON CG34354
3R	15876894	3R_15876894_SNP [dm3] 3R_20051172_SNP [dm6]	T	G	2.606e^-5	0.141	INTRON CG17193
3L	14381508	3L_14381508_SNP [dm3] 3L_14388408_SNP [dm6]	T	A	2.610e^-5	0.141	INTERGENIC
2L	21058903	2L_21058903_SNP [dm3] 2L_21058903_SNP [dm6]	T	C	2.611e^-5	0.141	DOWNSTREAM Itgbetanu INTRON CG9265
3R	14676243	3R_14676243_DEL [dm3] 3R_18850521_DEL [dm6]	GT	G	2.617e^-5	0.141	DOWNSTREAM CR45633 & 1 other INTERGENIC
2L	6772536	2L_6772536_SNP [dm3] 2L_6772536_SNP [dm6]	A	T	2.621e^-5	0.141	UTR_5_PRIME CG11321 INTRON CG11321
3R	14705188	3R_14705188_SNP [dm3] 3R_18879466_SNP [dm6]	A	T	2.653e^-5	0.142	INTERGENIC
3R	15180582	3R_15180582_SNP [dm3] 3R_19354860_SNP [dm6]	A	C	2.665e^-5	0.142	UTR_3_PRIME CG43203	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	1131514	2R_1131514_DEL [dm3] 2R_5244009_DEL [dm6]	TGCACTCTC	AAA	2.666e^-5	0.142	INTRON Nipped-A	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
2L	19859344	2L_19859344_DEL [dm3] 2L_19859344_DEL [dm6]	TG	T	2.681e^-5	0.142	INTRON sick
3L	975783	3L_975783_SNP [dm3] 3L_975783_SNP [dm6]	A	G	2.706e^-5	0.143	INTRON Glut1
3L	12109808	3L_12109808_SNP [dm3] 3L_12116708_SNP [dm6]	T	G	2.725e^-5	0.144	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9393499	3R_9393499_SNP [dm3] 3R_13567777_SNP [dm6]	T	C	2.810e^-5	0.148	INTERGENIC
2R	2970440	2R_2970440_SNP [dm3] 2R_7082935_SNP [dm6]	A	C	2.816e^-5	0.148	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15892176	3R_15892176_SNP [dm3] 3R_20066454_SNP [dm6]	T	C	2.849e^-5	0.149	INTERGENIC
3R	11670621	3R_11670621_SNP [dm3] 3R_15844899_SNP [dm6]	A	G	2.856e^-5	0.149	SYNONYMOUS_CODING cv-d DOWNSTREAM spn-E
2R	2839454	2R_2839454_SNP [dm3] 2R_6951949_SNP [dm6]	C	A	2.915e^-5	0.152	SYNONYMOUS_CODING ppk25 INTRON mim & 1 other
3R	2986942	3R_2986942_DEL [dm3] 3R_7161220_DEL [dm6]	AAA	TG	2.930e^-5	0.152	INTERGENIC
3R	8741980	3R_8741980_SNP [dm3] 3R_12916258_SNP [dm6]	T	G	2.950e^-5	0.152	START_GAINED beat-Vb UTR_5_PRIME beat-Vb INTRON beat-Vb
3L	12102544	3L_12102544_SNP [dm3] 3L_12109444_SNP [dm6]	A	T	2.954e^-5	0.152	INTERGENIC
3L	12065828	3L_12065828_SNP [dm3] 3L_12072728_SNP [dm6]	A	C	2.969e^-5	0.152	INTRON Sema-5c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	12506547	3R_12506547_SNP [dm3] 3R_16680825_SNP [dm6]	G	T	2.991e^-5	0.152	INTRON Ubx	TF binding site mE1_TFBS_cad
3L	2359763	3L_2359763_SNP [dm3] 3L_2359763_SNP [dm6]	A	G	3.002e^-5	0.152	UPSTREAM CG13801 INTERGENIC
3L	11756265	3L_11756265_DEL [dm3] 3L_11763165_DEL [dm6]	AAGT	TG	3.004e^-5	0.152	INTRON CG6024
3R	23630469	3R_23630469_DEL [dm3] 3R_27804747_DEL [dm6]	GG	G	3.006e^-5	0.152	INTRON CG34353
X	746104	X_746104_SNP [dm3] X_852071_SNP [dm6]	C	A	3.018e^-5	0.152	INTRON CG43867
X	5261542	X_5261542_INS [dm3] X_5367509_INS [dm6]	T	TT	3.027e^-5	0.152	INTRON SK
3R	11598416	3R_11598416_SNP [dm3] 3R_15772694_SNP [dm6]	G	A	3.029e^-5	0.152	INTERGENIC
3R	10366709	3R_10366709_DEL [dm3] 3R_14540987_DEL [dm6]	AA	A	3.031e^-5	0.152	INTRON Pde6
3R	9391721	3R_9391721_DEL [dm3] 3R_13565999_DEL [dm6]	TTTAACCCTTT...	T	3.033e^-5	0.152	INTERGENIC
X	9051033	X_9051033_SNP [dm3] X_9157000_SNP [dm6]	C	T	3.041e^-5	0.153	UTR_3_PRIME Ost48 UPSTREAM His3.3B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	15892036	3R_15892036_SNP [dm3] 3R_20066314_SNP [dm6]	A	G	3.052e^-5	0.153	INTERGENIC
2L	5911226	2L_5911226_SNP [dm3] 2L_5911226_SNP [dm6]	C	G	3.062e^-5	0.153	SYNONYMOUS_CODING bchs UPSTREAM CG14000
3L	10396471	3L_10396471_DEL [dm3] 3L_10403371_DEL [dm6]	TAAG	T	3.089e^-5	0.154	INTERGENIC
3R	12506612	3R_12506612_SNP [dm3] 3R_16680890_SNP [dm6]	A	T	3.104e^-5	0.154	INTRON Ubx	TF binding site mE1_TFBS_cad
2L	16214070	2L_16214070_SNP [dm3] 2L_16214070_SNP [dm6]	A	G	3.125e^-5	0.154	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21861112	3L_21861112_SNP [dm3] 3L_21868012_SNP [dm6]	A	C	3.130e^-5	0.154	INTRON mub	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11603222	3L_11603222_INS [dm3] 3L_11610122_INS [dm6]	C	CC	3.136e^-5	0.154	UPSTREAM CG42832 & 1 other DOWNSTREAM Muc68Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21058878	2L_21058878_SNP [dm3] 2L_21058878_SNP [dm6]	A	G	3.141e^-5	0.154	DOWNSTREAM Itgbetanu INTRON CG9265
3R	24583593	3R_24583593_SNP [dm3] 3R_28757871_SNP [dm6]	G	A	3.145e^-5	0.154	SYNONYMOUS_CODING aqrs UPSTREAM CG9997
3R	14718448	3R_14718448_SNP [dm3] 3R_18892726_SNP [dm6]	A	G	3.156e^-5	0.154	INTERGENIC
X	797812	X_797812_SNP [dm3] X_903779_SNP [dm6]	T	G	3.178e^-5	0.155	INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7418984	2L_7418984_SNP [dm3] 2L_7418984_SNP [dm6]	T	A	3.185e^-5	0.155	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23831560	3R_23831560_DEL [dm3] 3R_28005838_DEL [dm6]	AATTCTTG	A	3.205e^-5	0.155	INTERGENIC
3L	20201521	3L_20201521_SNP [dm3] 3L_20208421_SNP [dm6]	C	T	3.211e^-5	0.155	SYNONYMOUS_CODING CG6996	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15892155	3R_15892155_SNP [dm3] 3R_20066433_SNP [dm6]	G	A	3.212e^-5	0.155	INTERGENIC
3L	12525869	3L_12525869_SNP [dm3] 3L_12532769_SNP [dm6]	A	T	3.222e^-5	0.155	SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
3R	15815337	3R_15815337_INS [dm3] 3R_19989615_INS [dm6]	C	CTTTTCCATCCAAATGTATA...	3.231e^-5	0.155	INTRON Hs6st
3R	15875781	3R_15875781_SNP [dm3] 3R_20050059_SNP [dm6]	A	G	3.242e^-5	0.155	INTRON CG17193
3R	15892115	3R_15892115_SNP [dm3] 3R_20066393_SNP [dm6]	T	A	3.252e^-5	0.155	INTERGENIC
3L	14381746	3L_14381746_SNP [dm3] 3L_14388646_SNP [dm6]	T	A	3.267e^-5	0.156	INTERGENIC
3L	19681196	3L_19681196_SNP [dm3] 3L_19688096_SNP [dm6]	T	C	3.285e^-5	0.156	UPSTREAM CG8765 INTRON Gbeta76C
3R	11969549	3R_11969549_SNP [dm3] 3R_16143827_SNP [dm6]	G	A	3.301e^-5	0.156	SPLICE_SITE_REGION Sb INTRON Sb
3R	16211029	3R_16211029_DEL [dm3] 3R_20385307_DEL [dm6]	AAGAAA	T	3.303e^-5	0.156	INTRON Gfrl
3R	14517229	3R_14517229_SNP [dm3] 3R_18691507_SNP [dm6]	G	T	3.309e^-5	0.156	INTRON Muc91C
3R	15892451	3R_15892451_SNP [dm3] 3R_20066729_SNP [dm6]	G	T	3.333e^-5	0.156	INTERGENIC
3R	14743245	3R_14743245_SNP [dm3] 3R_18917523_SNP [dm6]	G	A	3.337e^-5	0.156	UPSTREAM Xrp1 INTRON Xrp1	TF binding site mE1_TFBS_cnc transposable element FlyBase
3L	20300945	3L_20300945_SNP [dm3] 3L_20307845_SNP [dm6]	T	C	3.351e^-5	0.157	NON_SYNONYMOUS_CODING CG6597	TF binding site BDTNP1_TFBS_twi
3R	9830153	3R_9830153_SNP [dm3] 3R_14004431_SNP [dm6]	C	A	3.382e^-5	0.158	INTRON rdx
3R	9579254	3R_9579254_SNP [dm3] 3R_13753532_SNP [dm6]	G	A	3.419e^-5	0.159	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16614018	2L_16614018_INS [dm3] 2L_16614018_INS [dm6]	T	TT	3.433e^-5	0.159	INTRON CG42389
3R	14771388	3R_14771388_SNP [dm3] 3R_18945666_SNP [dm6]	T	A	3.434e^-5	0.159	INTRON CG42613
X	18434597	X_18434597_DEL [dm3] X_18540564_DEL [dm6]	TT	T	3.506e^-5	0.162	INTRON Bx
2L	9251110	2L_9251110_DEL [dm3] 2L_9251110_DEL [dm6]	CGTGCGAAAATACATTTTAA...	C	3.536e^-5	0.163	UPSTREAM aust DOWNSTREAM CR43734 & 2 others INTERGENIC
3L	3155525	3L_3155525_SNP [dm3] 3L_3155525_SNP [dm6]	A	G	3.583e^-5	0.165	UTR_3_PRIME BtbVII DOWNSTREAM BtbVII INTRON BtbVII
3R	15147993	3R_15147993_SNP [dm3] 3R_19322271_SNP [dm6]	C	A	3.593e^-5	0.165	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	14384355	3L_14384355_SNP [dm3] 3L_14391255_SNP [dm6]	T	C	3.600e^-5	0.165	INTERGENIC
3R	23859243	3R_23859243_SNP [dm3] 3R_28033521_SNP [dm6]	C	T	3.626e^-5	0.165	INTRON CG34362
3R	20984201	3R_20984201_SNP [dm3] 3R_25158479_SNP [dm6]	G	A	3.651e^-5	0.166	INTERGENIC
X	10205541	X_10205541_SNP [dm3] X_10311508_SNP [dm6]	C	A	3.679e^-5	0.167	INTRON alpha-Man-I
3R	15875812	3R_15875812_SNP [dm3] 3R_20050090_SNP [dm6]	C	A	3.699e^-5	0.167	INTRON CG17193
3R	15888186	3R_15888186_SNP [dm3] 3R_20062464_SNP [dm6]	C	A	3.705e^-5	0.167	INTERGENIC
3L	18498186	3L_18498186_SNP [dm3] 3L_18505086_SNP [dm6]	C	T	3.717e^-5	0.167	INTERGENIC
2L	12280905	2L_12280905_SNP [dm3] 2L_12280905_SNP [dm6]	A	C	3.721e^-5	0.167	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13425689	3R_13425689_SNP [dm3] 3R_17599967_SNP [dm6]	T	G	3.724e^-5	0.167	INTERGENIC
3R	13156322	3R_13156322_SNP [dm3] 3R_17330600_SNP [dm6]	C	G	3.724e^-5	0.167	INTRON beat-IIa	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14771391	3R_14771391_SNP [dm3] 3R_18945669_SNP [dm6]	A	T	3.765e^-5	0.168	INTRON CG42613
2R	2915199	2R_2915199_SNP [dm3] 2R_7027694_SNP [dm6]	T	C	3.767e^-5	0.168	INTRON Tsp42Ef	TF binding site mE1_TFBS_cad
3R	15875900	3R_15875900_SNP [dm3] 3R_20050178_SNP [dm6]	T	G	3.786e^-5	0.168	INTRON CG17193
3R	1100667	3R_1100667_SNP [dm3] 3R_5274945_SNP [dm6]	T	G	3.803e^-5	0.168	DOWNSTREAM CG31538 INTRON mtd
3R	23299932	3R_23299932_INS [dm3] 3R_27474210_INS [dm6]	A	ATA	3.813e^-5	0.168	INTERGENIC
2L	7898797	2L_7898797_INS [dm3] 2L_7898797_INS [dm6]	T	TAT	3.827e^-5	0.168	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	15764423	3L_15764423_SNP [dm3] 3L_15771323_SNP [dm6]	T	A	3.830e^-5	0.168	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18251288	X_18251288_SNP [dm3] X_18357255_SNP [dm6]	G	T	3.837e^-5	0.168	INTERGENIC
3L	14386266	3L_14386266_SNP [dm3] 3L_14393166_SNP [dm6]	A	T	3.849e^-5	0.168	INTERGENIC
3R	15890792	3R_15890792_SNP [dm3] 3R_20065070_SNP [dm6]	T	G	3.854e^-5	0.168	INTERGENIC
3R	19895004	3R_19895004_SNP [dm3] 3R_24069282_SNP [dm6]	T	C	3.857e^-5	0.168	INTRON 4EHP
3L	7815860	3L_7815860_SNP [dm3] 3L_7822760_SNP [dm6]	G	C	3.875e^-5	0.168	INTRON Pdp1
2L	7728228	2L_7728228_DEL [dm3] 2L_7728228_DEL [dm6]	TG	A	3.880e^-5	0.168	SPLICE_SITE_REGION CG13796 INTRON CG13796
3R	14707344	3R_14707344_SNP [dm3] 3R_18881622_SNP [dm6]	T	C	3.910e^-5	0.169	INTERGENIC
3R	14711265	3R_14711265_SNP [dm3] 3R_18885543_SNP [dm6]	A	T	3.913e^-5	0.169	INTERGENIC
3R	24814709	3R_24814709_SNP [dm3] 3R_28988987_SNP [dm6]	C	A	3.916e^-5	0.169	INTERGENIC
3R	11550044	3R_11550044_SNP [dm3] 3R_15724322_SNP [dm6]	C	A	3.918e^-5	0.169	INTERGENIC
3R	11551943	3R_11551943_SNP [dm3] 3R_15726221_SNP [dm6]	G	C	3.944e^-5	0.169	INTERGENIC
3R	11551952	3R_11551952_SNP [dm3] 3R_15726230_SNP [dm6]	G	A	3.944e^-5	0.169	INTERGENIC
3R	9380337	3R_9380337_SNP [dm3] 3R_13554615_SNP [dm6]	T	A	3.949e^-5	0.169	INTERGENIC
2L	7938695	2L_7938695_SNP [dm3] 2L_7938695_SNP [dm6]	A	G	3.968e^-5	0.169	INTRON Snoo
3R	12344912	3R_12344912_DEL [dm3] 3R_16519190_DEL [dm6]	TT	T	3.990e^-5	0.169	INTRON CG42342
3R	23630559	3R_23630559_SNP [dm3] 3R_27804837_SNP [dm6]	C	T	3.996e^-5	0.169	INTRON CG34353
3R	21266099	3R_21266099_INS [dm3] 3R_25440377_INS [dm6]	T	TT	3.999e^-5	0.169	INTRON Fur1
3R	14749192	3R_14749192_SNP [dm3] 3R_18923470_SNP [dm6]	A	G	4.014e^-5	0.169	UPSTREAM Xrp1 INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	9393522	3R_9393522_SNP [dm3] 3R_13567800_SNP [dm6]	G	T	4.027e^-5	0.169	INTERGENIC
3R	24041425	3R_24041425_SNP [dm3] 3R_28215703_SNP [dm6]	G	C	4.036e^-5	0.169	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	15892071	3R_15892071_INS [dm3] 3R_20066349_INS [dm6]	A	AA	4.036e^-5	0.169	INTERGENIC
X	7600034	X_7600034_DEL [dm3] X_7706001_DEL [dm6]	TT	T	4.038e^-5	0.169	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4707384	2L_4707384_SNP [dm3] 2L_4707384_SNP [dm6]	C	T	4.050e^-5	0.169	INTRON CG34351
2R	11773280	2R_11773280_SNP [dm3] 2R_15885775_SNP [dm6]	C	T	4.055e^-5	0.169	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	10396467	3L_10396467_SNP [dm3] 3L_10403367_SNP [dm6]	C	T	4.062e^-5	0.169	INTERGENIC
3R	11424573	3R_11424573_SNP [dm3] 3R_15598851_SNP [dm6]	G	T	4.079e^-5	0.169	INTERGENIC
3L	19681193	3L_19681193_SNP [dm3] 3L_19688093_SNP [dm6]	C	T	4.101e^-5	0.169	UPSTREAM CG8765 INTRON Gbeta76C
3L	12109667	3L_12109667_SNP [dm3] 3L_12116567_SNP [dm6]	C	T	4.108e^-5	0.169	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15892161	3R_15892161_SNP [dm3] 3R_20066439_SNP [dm6]	A	G	4.109e^-5	0.169	INTERGENIC
3R	14743224	3R_14743224_SNP [dm3] 3R_18917502_SNP [dm6]	G	A	4.135e^-5	0.17	UPSTREAM Xrp1 INTRON Xrp1	TF binding site mE1_TFBS_cnc transposable element FlyBase
3L	15273507	3L_15273507_SNP [dm3] 3L_15280407_SNP [dm6]	A	T	4.149e^-5	0.17	INTERGENIC
2L	7338270	2L_7338270_SNP [dm3] 2L_7338270_SNP [dm6]	A	G	4.150e^-5	0.17	INTRON Wnt6
X	14260652	X_14260652_SNP [dm3] X_14366619_SNP [dm6]	T	G	4.188e^-5	0.171	INTRON dpr8
3R	7818015	3R_7818015_SNP [dm3] 3R_11992293_SNP [dm6]	A	G	4.196e^-5	0.171	INTRON mfas
X	7599741	X_7599741_DEL [dm3] X_7705708_DEL [dm6]	AAA	A	4.215e^-5	0.171	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15182240	2L_15182240_SNP [dm3] 2L_15182240_SNP [dm6]	C	A	4.219e^-5	0.171	INTRON CG4168	TF binding site mE1_TFBS_cad
3L	4731224	3L_4731224_INS [dm3] 3L_4731224_INS [dm6]	T	TCAT	4.232e^-5	0.171	INTRON RhoGEF64C
3R	11700553	3R_11700553_SNP [dm3] 3R_15874831_SNP [dm6]	A	C	4.245e^-5	0.172	INTRON CG31183
3R	15887107	3R_15887107_SNP [dm3] 3R_20061385_SNP [dm6]	A	G	4.263e^-5	0.172	INTERGENIC
2R	1127765	2R_1127765_DEL [dm3] 2R_5240260_DEL [dm6]	TGTTTCGATCTAATGGGGAG...	T	4.264e^-5	0.172	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl
3R	13276446	3R_13276446_SNP [dm3] 3R_17450724_SNP [dm6]	G	T	4.289e^-5	0.172	INTERGENIC
X	14321461	X_14321461_SNP [dm3] X_14427428_SNP [dm6]	C	T	4.290e^-5	0.172	INTRON dpr8
X	800661	X_800661_SNP [dm3] X_906628_SNP [dm6]	A	G	4.303e^-5	0.172	INTRON CG43867
2L	14104692	2L_14104692_SNP [dm3] 2L_14104692_SNP [dm6]	C	T	4.304e^-5	0.172	SYNONYMOUS_CODING CG16879	TF binding site mE1_TFBS_cad
2R	18045745	2R_18045745_INS [dm3] 2R_22158240_INS [dm6]	G	GTGG	4.317e^-5	0.172	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15877377	3R_15877377_SNP [dm3] 3R_20051655_SNP [dm6]	C	A	4.333e^-5	0.172	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	2640595	3L_2640595_SNP [dm3] 3L_2640595_SNP [dm6]	G	C	4.334e^-5	0.172	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15650152	3R_15650152_SNP [dm3] 3R_19824430_SNP [dm6]	A	C	4.349e^-5	0.172	INTRON bnl
3R	14711282	3R_14711282_SNP [dm3] 3R_18885560_SNP [dm6]	T	A	4.367e^-5	0.172	INTERGENIC
3R	15880285	3R_15880285_SNP [dm3] 3R_20054563_SNP [dm6]	G	A	4.410e^-5	0.174	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11722005	3R_11722005_SNP [dm3] 3R_15896283_SNP [dm6]	A	G	4.427e^-5	0.174	UPSTREAM CG14877 DOWNSTREAM glob1 INTERGENIC
3R	4146171	3R_4146171_SNP [dm3] 3R_8320449_SNP [dm6]	G	A	4.470e^-5	0.175	SYNONYMOUS_CODING Poxm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11850104	3R_11850104_SNP [dm3] 3R_16024382_SNP [dm6]	T	C	4.478e^-5	0.175	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23837320	3R_23837320_SNP [dm3] 3R_28011598_SNP [dm6]	T	C	4.482e^-5	0.175	INTERGENIC
2L	17500800	2L_17500800_SNP [dm3] 2L_17500800_SNP [dm6]	G	A	4.482e^-5	0.175	START_GAINED CG6412 UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	9389774	3R_9389774_SNP [dm3] 3R_13564052_SNP [dm6]	C	T	4.492e^-5	0.175	INTERGENIC
3L	21255282	3L_21255282_SNP [dm3] 3L_21262182_SNP [dm6]	G	A	4.503e^-5	0.175	INTRON Eip78C
3L	21255269	3L_21255269_SNP [dm3] 3L_21262169_SNP [dm6]	A	G	4.519e^-5	0.175	INTRON Eip78C
3R	13969220	3R_13969220_SNP [dm3] 3R_18143498_SNP [dm6]	T	G	4.530e^-5	0.175	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9749375	3L_9749375_SNP [dm3] 3L_9756275_SNP [dm6]	C	T	4.531e^-5	0.175	INTRON CG42268
3R	15815350	3R_15815350_SNP [dm3] 3R_19989628_SNP [dm6]	C	T	4.573e^-5	0.176	INTRON Hs6st
3R	15524467	3R_15524467_SNP [dm3] 3R_19698745_SNP [dm6]	G	A	4.581e^-5	0.176	DOWNSTREAM Naam INTERGENIC
3R	23837394	3R_23837394_SNP [dm3] 3R_28011672_SNP [dm6]	G	A	4.616e^-5	0.177	INTERGENIC
3L	18498240	3L_18498240_SNP [dm3] 3L_18505140_SNP [dm6]	G	T	4.619e^-5	0.177	INTERGENIC
2L	13289598	2L_13289598_SNP [dm3] 2L_13289598_SNP [dm6]	G	A	4.633e^-5	0.177	UPSTREAM CG31729 & 1 other DOWNSTREAM Uvrag INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	15877779	3R_15877779_SNP [dm3] 3R_20052057_SNP [dm6]	T	A	4.640e^-5	0.177	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	23840892	3R_23840892_SNP [dm3] 3R_28015170_SNP [dm6]	G	A	4.658e^-5	0.177	INTERGENIC
3R	15032297	3R_15032297_DEL [dm3] 3R_19206575_DEL [dm6]	TATC	AG	4.670e^-5	0.177	INTERGENIC
3L	19214090	3L_19214090_DEL [dm3] 3L_19220990_DEL [dm6]	TGGGCCTAAA	C	4.680e^-5	0.177	INTRON fz2
3R	14703139	3R_14703139_DEL [dm3] 3R_18877417_DEL [dm6]	AC	A	4.685e^-5	0.177	DOWNSTREAM CG14298 INTERGENIC
3R	10628425	3R_10628425_SNP [dm3] 3R_14802703_SNP [dm6]	C	A	4.705e^-5	0.177	INTRON CG14857
3R	15864213	3R_15864213_INS [dm3] 3R_20038491_INS [dm6]	T	TTAC	4.749e^-5	0.177	UTR_3_PRIME CG17193
3R	14597833	3R_14597833_SNP [dm3] 3R_18772111_SNP [dm6]	C	T	4.756e^-5	0.177	INTRON CG7720
3R	14711271	3R_14711271_MNP [dm3] 3R_18885549_MNP [dm6]	GAA	AGT	4.761e^-5	0.177	INTERGENIC
3R	11551934	3R_11551934_SNP [dm3] 3R_15726212_SNP [dm6]	T	A	4.762e^-5	0.177	INTERGENIC
2L	9918468	2L_9918468_SNP [dm3] 2L_9918468_SNP [dm6]	G	A	4.765e^-5	0.177	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	2852632	3R_2852632_DEL [dm3] 3R_7026910_DEL [dm6]	CACGTTCCCATTCAGCGCCT...	C	4.765e^-5	0.177	INTERGENIC
3R	15892601	3R_15892601_SNP [dm3] 3R_20066879_SNP [dm6]	G	A	4.770e^-5	0.177	INTERGENIC
3R	10994818	3R_10994818_SNP [dm3] 3R_15169096_SNP [dm6]	C	T	4.773e^-5	0.177	INTRON Gyc88E
2L	16212900	2L_16212900_SNP [dm3] 2L_16212900_SNP [dm6]	G	A	4.792e^-5	0.177	SYNONYMOUS_CODING CG31819
3R	24660135	3R_24660135_SNP [dm3] 3R_28834413_SNP [dm6]	C	A	4.805e^-5	0.177	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	14711267	3R_14711267_SNP [dm3] 3R_18885545_SNP [dm6]	A	G	4.824e^-5	0.177	INTERGENIC
3R	14711269	3R_14711269_SNP [dm3] 3R_18885547_SNP [dm6]	T	A	4.824e^-5	0.177	INTERGENIC
3R	14585964	3R_14585964_INS [dm3] 3R_18760242_INS [dm6]	A	AA	4.829e^-5	0.177	INTRON CG7720
2L	4654535	2L_4654535_SNP [dm3] 2L_4654535_SNP [dm6]	G	A	4.835e^-5	0.177	INTERGENIC
3R	16650596	3R_16650596_DEL [dm3] 3R_20824874_DEL [dm6]	TGCGAGCCCCGGACGGCACC...	T	4.850e^-5	0.178	UTR_3_PRIME AdSS UPSTREAM CG17272	TF binding site mE1_TFBS_cad
3R	11551935	3R_11551935_SNP [dm3] 3R_15726213_SNP [dm6]	G	A	4.899e^-5	0.179	INTERGENIC
3R	10608681	3R_10608681_DEL [dm3] 3R_14782959_DEL [dm6]	TT	T	4.941e^-5	0.18	INTRON jvl
3R	14739102	3R_14739102_SNP [dm3] 3R_18913380_SNP [dm6]	G	A	4.961e^-5	0.18	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	15180481	3R_15180481_SNP [dm3] 3R_19354759_SNP [dm6]	T	A	4.980e^-5	0.18	UTR_3_PRIME CG43203	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	14718639	3R_14718639_SNP [dm3] 3R_18892917_SNP [dm6]	A	C	5.006e^-5	0.18	INTERGENIC
3L	19272521	3L_19272521_SNP [dm3] 3L_19279421_SNP [dm6]	C	G	5.013e^-5	0.18	SYNONYMOUS_CODING CG14086 DOWNSTREAM CG14089
3R	14147699	3R_14147699_SNP [dm3] 3R_18321977_SNP [dm6]	C	A	5.016e^-5	0.18	INTRON CG31235
3L	20154863	3L_20154863_SNP [dm3] 3L_20161763_SNP [dm6]	G	A	5.017e^-5	0.18	INTRON CG42674
3R	14672211	3R_14672211_DEL [dm3] 3R_18846489_DEL [dm6]	GC	G	5.019e^-5	0.18	INTRON CG18208
3R	15004430	3R_15004430_SNP [dm3] 3R_19178708_SNP [dm6]	C	T	5.023e^-5	0.18	SYNONYMOUS_CODING CG5555 DOWNSTREAM CG14282	TF binding site mE1_TFBS_sens
3R	14751674	3R_14751674_SNP [dm3] 3R_18925952_SNP [dm6]	C	A	5.023e^-5	0.18	SYNONYMOUS_CODING Xrp1	TF binding site mE1_TFBS_cad
3R	15068573	3R_15068573_SNP [dm3] 3R_19242851_SNP [dm6]	T	G	5.137e^-5	0.184	INTRON unc79	TF binding site mE1_TFBS_cad
3R	9928365	3R_9928365_SNP [dm3] 3R_14102643_SNP [dm6]	C	T	5.200e^-5	0.186	SYNONYMOUS_CODING PK1-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14386744	3L_14386744_SNP [dm3] 3L_14393644_SNP [dm6]	G	T	5.203e^-5	0.186	INTERGENIC
3R	25376031	3R_25376031_DEL [dm3] 3R_29550309_DEL [dm6]	TGGATACGCGGCGATATGCG...	T	5.216e^-5	0.186	INTERGENIC
3L	14381745	3L_14381745_SNP [dm3] 3L_14388645_SNP [dm6]	G	A	5.280e^-5	0.188	INTERGENIC
3R	9402555	3R_9402555_SNP [dm3] 3R_13576833_SNP [dm6]	A	G	5.326e^-5	0.189	INTERGENIC
3R	19744038	3R_19744038_DEL [dm3] 3R_23918316_DEL [dm6]	TCTAGAAATATATAGGGT...	T	5.377e^-5	0.19	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9749408	3L_9749408_SNP [dm3] 3L_9756308_SNP [dm6]	C	T	5.382e^-5	0.19	INTRON CG42268
3R	9888619	3R_9888619_DEL [dm3] 3R_14062897_DEL [dm6]	GTACCGAGCGGAAATTTTGA...	G	5.395e^-5	0.19	INTRON foxo
3R	15004592	3R_15004592_SNP [dm3] 3R_19178870_SNP [dm6]	T	C	5.413e^-5	0.19	SYNONYMOUS_CODING CG5555 DOWNSTREAM CG14282	TF binding site mE1_TFBS_sens
3L	16753156	3L_16753156_SNP [dm3] 3L_16760056_SNP [dm6]	C	A	5.415e^-5	0.19	INTERGENIC
3R	15891906	3R_15891906_SNP [dm3] 3R_20066184_SNP [dm6]	G	T	5.429e^-5	0.19	INTERGENIC
X	14321370	X_14321370_SNP [dm3] X_14427337_SNP [dm6]	A	T	5.442e^-5	0.19	INTRON dpr8
2L	9918471	2L_9918471_SNP [dm3] 2L_9918471_SNP [dm6]	T	C	5.448e^-5	0.19	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15121074	3R_15121074_SNP [dm3] 3R_19295352_SNP [dm6]	G	A	5.467e^-5	0.19	INTERGENIC
3L	17748458	3L_17748458_SNP [dm3] 3L_17755358_SNP [dm6]	G	A	5.471e^-5	0.19	SYNONYMOUS_CODING Msi INTRON Adgf-A
3R	14718889	3R_14718889_SNP [dm3] 3R_18893167_SNP [dm6]	G	A	5.498e^-5	0.19	INTERGENIC
3R	6537297	3R_6537297_DEL [dm3] 3R_10711575_DEL [dm6]	TTTAAGTTTAAATAAA...	T	5.512e^-5	0.19	UPSTREAM CG14689 INTERGENIC
3L	19805947	3L_19805947_SNP [dm3] 3L_19812847_SNP [dm6]	C	T	5.557e^-5	0.19	DOWNSTREAM cyc INTRON Cyp305a1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1896962	3L_1896962_SNP [dm3] 3L_1896962_SNP [dm6]	C	G	5.561e^-5	0.19	SYNONYMOUS_CODING CG1887	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9143253	2R_9143253_DEL [dm3] 2R_13255748_DEL [dm6]	AA	A	5.567e^-5	0.19	UPSTREAM CR44343 & 1 other INTERGENIC
X	16679364	X_16679364_DEL [dm3] X_16785331_DEL [dm6]	CGGATGTTTCTGAACGCAAA...	C	5.581e^-5	0.19	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
3R	15127512	3R_15127512_SNP [dm3] 3R_19301790_SNP [dm6]	C	A	5.582e^-5	0.19	DOWNSTREAM Dl INTERGENIC
3L	14684026	3L_14684026_SNP [dm3] 3L_14690926_SNP [dm6]	T	C	5.588e^-5	0.19	UPSTREAM CG13477 INTRON ome
3L	16185969	3L_16185969_SNP [dm3] 3L_16192869_SNP [dm6]	T	C	5.596e^-5	0.19	INTERGENIC
3L	15148465	3L_15148465_SNP [dm3] 3L_15155365_SNP [dm6]	G	A	5.601e^-5	0.19	SPLICE_SITE_REGION Msh6 DOWNSTREAM FucTA INTRON Msh6
3L	10418338	3L_10418338_SNP [dm3] 3L_10425238_SNP [dm6]	C	A	5.622e^-5	0.19	INTERGENIC
3R	14516219	3R_14516219_SNP [dm3] 3R_18690497_SNP [dm6]	C	T	5.630e^-5	0.19	INTRON Muc91C
3R	14601638	3R_14601638_SNP [dm3] 3R_18775916_SNP [dm6]	G	C	5.641e^-5	0.19	INTRON CG7720
3R	3826795	3R_3826795_DEL [dm3] 3R_8001073_DEL [dm6]	CAATTG	C	5.641e^-5	0.19	UPSTREAM CG2698 DOWNSTREAM CG14463 INTRON Kmn2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10994869	3R_10994869_SNP [dm3] 3R_15169147_SNP [dm6]	C	T	5.647e^-5	0.19	INTRON Gyc88E
3R	9386840	3R_9386840_SNP [dm3] 3R_13561118_SNP [dm6]	C	T	5.647e^-5	0.19	INTERGENIC
3L	20526632	3L_20526632_SNP [dm3] 3L_20533532_SNP [dm6]	G	A	5.650e^-5	0.19	UPSTREAM CG13250 INTRON Rcd2
3L	20187609	3L_20187609_SNP [dm3] 3L_20194509_SNP [dm6]	C	G	5.658e^-5	0.19	INTRON CG42674
3L	18291644	3L_18291644_INS [dm3] 3L_18298544_INS [dm6]	TT	CGAGGGCTAATGGCTCGAAG...	5.673e^-5	0.19	DOWNSTREAM CG13700 INTERGENIC
3R	25022905	3R_25022905_SNP [dm3] 3R_29197183_SNP [dm6]	T	A	5.673e^-5	0.19	UPSTREAM CG14515 INTERGENIC
3R	24803910	3R_24803910_SNP [dm3] 3R_28978188_SNP [dm6]	G	A	5.684e^-5	0.19	INTERGENIC
3R	15892011	3R_15892011_SNP [dm3] 3R_20066289_SNP [dm6]	A	T	5.700e^-5	0.19	INTERGENIC
3R	15881036	3R_15881036_SNP [dm3] 3R_20055314_SNP [dm6]	C	T	5.700e^-5	0.19	INTRON CG17193
3L	19681195	3L_19681195_SNP [dm3] 3L_19688095_SNP [dm6]	T	C	5.732e^-5	0.191	UPSTREAM CG8765 INTRON Gbeta76C
3R	11425234	3R_11425234_SNP [dm3] 3R_15599512_SNP [dm6]	A	G	5.776e^-5	0.191	INTERGENIC
3R	10887673	3R_10887673_SNP [dm3] 3R_15061951_SNP [dm6]	C	T	5.785e^-5	0.191	INTRON dpr9
3R	21185845	3R_21185845_SNP [dm3] 3R_25360123_SNP [dm6]	T	C	5.789e^-5	0.191	DOWNSTREAM CG11913 INTRON Fur1
2L	13502884	2L_13502884_DEL [dm3] 2L_13502884_DEL [dm6]	CTTAA	T	5.804e^-5	0.191	UTR_3_PRIME B4
3R	14591215	3R_14591215_SNP [dm3] 3R_18765493_SNP [dm6]	C	A	5.804e^-5	0.191	INTRON CG7720
3L	4533670	3L_4533670_SNP [dm3] 3L_4533670_SNP [dm6]	G	A	5.816e^-5	0.191	INTRON CG11353
3L	20414148	3L_20414148_SNP [dm3] 3L_20421048_SNP [dm6]	A	G	5.818e^-5	0.191	SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4074326	2R_4074326_SNP [dm3] 2R_8186821_SNP [dm6]	A	G	5.833e^-5	0.191	INTRON LRP1
3R	15876868	3R_15876868_SNP [dm3] 3R_20051146_SNP [dm6]	T	G	5.848e^-5	0.191	INTRON CG17193
3L	12107227	3L_12107227_SNP [dm3] 3L_12114127_SNP [dm6]	G	A	5.860e^-5	0.191	INTERGENIC
3R	25025729	3R_25025729_SNP [dm3] 3R_29200007_SNP [dm6]	T	A	5.866e^-5	0.191	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15424404	3R_15424404_SNP [dm3] 3R_19598682_SNP [dm6]	T	G	5.872e^-5	0.191	INTRON Cpr92A
3R	13156329	3R_13156329_SNP [dm3] 3R_17330607_SNP [dm6]	C	A	5.898e^-5	0.191	INTRON beat-IIa	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27210520	3R_27210520_DEL [dm3] 3R_31384798_DEL [dm6]	TCTGTGGTATAT...	T	5.906e^-5	0.191	INTRON CG1607	TF binding site mE1_TFBS_Trl
3R	10656496	3R_10656496_SNP [dm3] 3R_14830774_SNP [dm6]	T	A	5.934e^-5	0.191	INTRON btsz
2L	12725493	2L_12725493_SNP [dm3] 2L_12725493_SNP [dm6]	G	T	5.941e^-5	0.191	INTRON MRP
X	797824	X_797824_SNP [dm3] X_903791_SNP [dm6]	A	T	5.952e^-5	0.191	INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12358043	2L_12358043_SNP [dm3] 2L_12358043_SNP [dm6]	A	C	5.954e^-5	0.191	NON_SYNONYMOUS_CODING bru-2 SPLICE_SITE_REGION bru-2 DOWNSTREAM CG17010	TF binding site mE1_TFBS_chinmo
X	19348967	X_19348967_DEL [dm3] X_19454934_DEL [dm6]	TGTATGTACA	T	5.954e^-5	0.191	INTRON kek5
3R	23434619	3R_23434619_SNP [dm3] 3R_27608897_SNP [dm6]	G	A	5.963e^-5	0.191	INTRON Tusp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20330248	3R_20330248_SNP [dm3] 3R_24504526_SNP [dm6]	G	T	5.977e^-5	0.191	INTERGENIC
X	14259895	X_14259895_SNP [dm3] X_14365862_SNP [dm6]	G	A	5.990e^-5	0.191	INTRON dpr8
2R	19154533	2R_19154533_DEL [dm3] 2R_23267010_DEL [dm6]	CTCC	C	5.994e^-5	0.191	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9589259	2L_9589259_SNP [dm3] 2L_9589259_SNP [dm6]	T	C	6.004e^-5	0.191	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
X	10306399	X_10306399_DEL [dm3] X_10412366_DEL [dm6]	TT	T	6.024e^-5	0.191	UTR_3_PRIME CG32683
3R	24115497	3R_24115497_SNP [dm3] 3R_28289775_SNP [dm6]	G	C	6.025e^-5	0.191	INTERGENIC
3L	16529131	3L_16529131_INS [dm3] 3L_16536031_INS [dm6]	A	ATT	6.029e^-5	0.191	INTRON CG43373
3L	3776821	3L_3776821_INS [dm3] 3L_3776821_INS [dm6]	C	CCC	6.030e^-5	0.191	INTRON CG32264
3L	12384131	3L_12384131_SNP [dm3] 3L_12391031_SNP [dm6]	C	T	6.040e^-5	0.191	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5334849	3L_5334849_SNP [dm3] 3L_5341749_SNP [dm6]	T	C	6.071e^-5	0.192	UPSTREAM tRNA:S7:64D INTERGENIC
3R	7817975	3R_7817975_INS [dm3] 3R_11992253_INS [dm6]	T	TGTTCGCAATTAGCT...	6.084e^-5	0.192	INTRON mfas
3L	20436590	3L_20436590_SNP [dm3] 3L_20443490_SNP [dm6]	C	G	6.109e^-5	0.193	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13643345	2L_13643345_SNP [dm3] 2L_13643345_SNP [dm6]	T	C	6.149e^-5	0.194	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
3R	20511575	3R_20511575_SNP [dm3] 3R_24685853_SNP [dm6]	G	A	6.203e^-5	0.194	INTRON slo
2L	21050757	2L_21050757_DEL [dm3] 2L_21050757_DEL [dm6]	TTATAGAT	T	6.211e^-5	0.194	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14530061	3R_14530061_SNP [dm3] 3R_18704339_SNP [dm6]	G	A	6.216e^-5	0.194	INTERGENIC
X	3210636	X_3210636_DEL [dm3] X_3316603_DEL [dm6]	TGACT	T	6.221e^-5	0.194	UPSTREAM CG10793 INTRON dnc & 1 other
3R	14771430	3R_14771430_SNP [dm3] 3R_18945708_SNP [dm6]	T	A	6.233e^-5	0.195	INTRON CG42613
3R	4166108	3R_4166108_SNP [dm3] 3R_8340386_SNP [dm6]	G	T	6.250e^-5	0.195	UPSTREAM Arl2 INTRON CG9603	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14592502	3R_14592502_SNP [dm3] 3R_18766780_SNP [dm6]	T	C	6.301e^-5	0.196	INTRON CG7720
3R	11599697	3R_11599697_DEL [dm3] 3R_15773975_DEL [dm6]	AA	A	6.315e^-5	0.196	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
3R	20592047	3R_20592047_SNP [dm3] 3R_24766325_SNP [dm6]	C	G	6.315e^-5	0.196	INTERGENIC
3L	15316625	3L_15316625_SNP [dm3] 3L_15323525_SNP [dm6]	T	G	6.321e^-5	0.196	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7215264	X_7215264_SNP [dm3] X_7321231_SNP [dm6]	A	G	6.359e^-5	0.197	INTRON CR44357 & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15892120	3R_15892120_SNP [dm3] 3R_20066398_SNP [dm6]	T	A	6.378e^-5	0.197	INTERGENIC
X	7682831	X_7682831_SNP [dm3] X_7788798_SNP [dm6]	A	T	6.412e^-5	0.197	INTERGENIC
3R	22730011	3R_22730011_DEL [dm3] 3R_26904289_DEL [dm6]	ACGGTAA	A	6.429e^-5	0.198	INTRON T48	regulatory region REDfly_CRMs
3R	25519572	3R_25519572_SNP [dm3] 3R_29693850_SNP [dm6]	A	G	6.455e^-5	0.198	INTRON dmrt99B	TF binding site mE1_TFBS_chinmo
3R	23468765	3R_23468765_DEL [dm3] 3R_27643043_DEL [dm6]	TT	T	6.474e^-5	0.198	UPSTREAM mir-1001 INTRON tau	TF binding site BDTNP1_TFBS_dl
3R	24842901	3R_24842901_DEL [dm3] 3R_29017179_DEL [dm6]	ACAAATATATAGAATATCTG...	T	6.490e^-5	0.198	INTRON wat
3R	25155825	3R_25155825_SNP [dm3] 3R_29330103_SNP [dm6]	G	C	6.490e^-5	0.198	INTERGENIC
X	11479401	X_11479401_SNP [dm3] X_11585368_SNP [dm6]	G	A	6.493e^-5	0.198	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17229184	2R_17229184_INS [dm3] 2R_21341679_INS [dm6]	G	GG	6.497e^-5	0.198	UTR_3_PRIME dom UPSTREAM CG15666
2L	17465339	2L_17465339_SNP [dm3] 2L_17465339_SNP [dm6]	C	A	6.525e^-5	0.198	INTRON BicD
2L	7302257	2L_7302257_SNP [dm3] 2L_7302257_SNP [dm6]	T	G	6.542e^-5	0.199	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	21913638	2L_21913638_SNP [dm3] 2L_21913638_SNP [dm6]	A	G	6.576e^-5	0.199	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
X	20302666	X_20302666_SNP [dm3] X_20431639_SNP [dm6]	T	C	6.576e^-5	0.199	SYNONYMOUS_CODING mal	TF binding site mE1_TFBS_sens
3R	11599725	3R_11599725_DEL [dm3] 3R_15774003_DEL [dm6]	TCCA	C	6.587e^-5	0.199	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
2R	8626913	2R_8626913_SNP [dm3] 2R_12739408_SNP [dm6]	A	G	6.605e^-5	0.199	INTRON CG42663
2L	19715057	2L_19715057_DEL [dm3] 2L_19715057_DEL [dm6]	CACCGGGC	C	6.620e^-5	0.199	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	11686363	3R_11686363_SNP [dm3] 3R_15860641_SNP [dm6]	C	A	6.630e^-5	0.199	SYNONYMOUS_CODING CG9632 INTRON CG31183 & 1 other
3R	15106054	3R_15106054_SNP [dm3] 3R_19280332_SNP [dm6]	C	T	6.630e^-5	0.199	UPSTREAM CR44173 INTERGENIC
3R	14114071	3R_14114071_SNP [dm3] 3R_18288349_SNP [dm6]	T	G	6.667e^-5	0.199	SYNONYMOUS_CODING CG7131 DOWNSTREAM l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24144231	3R_24144231_SNP [dm3] 3R_28318509_SNP [dm6]	G	T	6.671e^-5	0.199	UTR_3_PRIME larp
3R	21511963	3R_21511963_SNP [dm3] 3R_25686241_SNP [dm6]	C	T	6.675e^-5	0.199	INTRON CLS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
3R	14134876	3R_14134876_SNP [dm3] 3R_18309154_SNP [dm6]	C	T	6.678e^-5	0.199	UTR_5_PRIME PKD
2R	6394234	2R_6394234_SNP [dm3] 2R_10506729_SNP [dm6]	T	C	6.683e^-5	0.199	DOWNSTREAM lola INTRON lola
3L	12567366	3L_12567366_SNP [dm3] 3L_12574266_SNP [dm6]	A	G	6.696e^-5	0.199	INTERGENIC
3L	1896974	3L_1896974_SNP [dm3] 3L_1896974_SNP [dm6]	C	T	6.702e^-5	0.199	SYNONYMOUS_CODING CG1887 UTR_5_PRIME CG1887	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8082771	3R_8082771_SNP [dm3] 3R_12257049_SNP [dm6]	G	A	6.723e^-5	0.199	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	23114281	3R_23114281_SNP [dm3] 3R_27288559_SNP [dm6]	G	T	6.726e^-5	0.199	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	740080	X_740080_SNP [dm3] X_846047_SNP [dm6]	A	G	6.766e^-5	0.199	DOWNSTREAM CG3713 & 1 other INTRON CG43867
2L	10694937	2L_10694937_INS [dm3] 2L_10694937_INS [dm6]	C	CT	6.766e^-5	0.199	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
3L	1897646	3L_1897646_SNP [dm3] 3L_1897646_SNP [dm6]	A	G	6.791e^-5	0.199	UTR_5_PRIME CG1887 INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	15891978	3R_15891978_SNP [dm3] 3R_20066256_SNP [dm6]	A	T	6.799e^-5	0.199	INTERGENIC
3R	15875906	3R_15875906_SNP [dm3] 3R_20050184_SNP [dm6]	G	A	6.801e^-5	0.199	INTRON CG17193
2R	10183473	2R_10183473_DEL [dm3] 2R_14295968_DEL [dm6]	AAACAA	A	6.810e^-5	0.199	DOWNSTREAM Ih INTRON Ih
2R	16781121	2R_16781121_SNP [dm3] 2R_20893616_SNP [dm6]	T	C	6.812e^-5	0.199	INTRON otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10873673	3R_10873673_SNP [dm3] 3R_15047951_SNP [dm6]	G	A	6.823e^-5	0.199	INTERGENIC
X	15588906	X_15588906_SNP [dm3] X_15694873_SNP [dm6]	T	A	6.844e^-5	0.199	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20125599	2L_20125599_DEL [dm3] 2L_20125599_DEL [dm6]	TC	T	6.857e^-5	0.199	INTERGENIC
2L	7720802	2L_7720802_SNP [dm3] 2L_7720802_SNP [dm6]	T	C	6.867e^-5	0.199	INTRON CG13794
3R	15891982	3R_15891982_SNP [dm3] 3R_20066260_SNP [dm6]	G	C	6.875e^-5	0.199	INTERGENIC
X	21364686	X_21364686_INS [dm3] X_21493659_INS [dm6]	A	ACATA	6.877e^-5	0.199	INTERGENIC
2L	18994692	2L_18994692_SNP [dm3] 2L_18994692_SNP [dm6]	T	C	6.886e^-5	0.199	NON_SYNONYMOUS_CODING CG10650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19761615	3R_19761615_SNP [dm3] 3R_23935893_SNP [dm6]	T	A	6.896e^-5	0.199	UTR_3_PRIME CG5854 DOWNSTREAM Gdh
2R	13777802	2R_13777802_DEL [dm3] 2R_17890297_DEL [dm6]	TT	T	6.899e^-5	0.199	UPSTREAM PPO1 INTRON Elk
3R	23873454	3R_23873454_DEL [dm3] 3R_28047732_DEL [dm6]	GG	G	6.902e^-5	0.199	INTRON CG34362
3R	11605587	3R_11605587_SNP [dm3] 3R_15779865_SNP [dm6]	G	A	6.968e^-5	0.2	UTR_5_PRIME CG5614
3R	11515356	3R_11515356_DEL [dm3] 3R_15689634_DEL [dm6]	AA	A	6.972e^-5	0.2	UTR_3_PRIME pxb
3R	24041428	3R_24041428_SNP [dm3] 3R_28215706_SNP [dm6]	T	C	6.976e^-5	0.2	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	14748255	3R_14748255_SNP [dm3] 3R_18922533_SNP [dm6]	C	G	6.990e^-5	0.2	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_Trl
3L	12065733	3L_12065733_SNP [dm3] 3L_12072633_SNP [dm6]	T	A	6.999e^-5	0.2	INTRON Sema-5c
3R	15892266	3R_15892266_SNP [dm3] 3R_20066544_SNP [dm6]	G	A	7.002e^-5	0.2	INTERGENIC
3R	9928229	3R_9928229_SNP [dm3] 3R_14102507_SNP [dm6]	A	G	7.008e^-5	0.2	SYNONYMOUS_CODING PK1-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15864209	3R_15864209_DEL [dm3] 3R_20038487_DEL [dm6]	TGG	T	7.041e^-5	0.2	UTR_3_PRIME CG17193
3R	15815325	3R_15815325_SNP [dm3] 3R_19989603_SNP [dm6]	C	T	7.044e^-5	0.2	INTRON Hs6st
2R	17872963	2R_17872963_SNP [dm3] 2R_21985458_SNP [dm6]	A	G	7.054e^-5	0.2	DOWNSTREAM CG30401 INTERGENIC
3L	4626341	3L_4626341_SNP [dm3] 3L_4626341_SNP [dm6]	T	A	7.058e^-5	0.2	UPSTREAM Rpd3 & 1 other DOWNSTREAM CR45438 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2538015	3L_2538015_SNP [dm3] 3L_2538015_SNP [dm6]	G	C	7.071e^-5	0.2	INTRON Spn
2R	16762358	2R_16762358_SNP [dm3] 2R_20874853_SNP [dm6]	C	T	7.138e^-5	0.202	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
2L	1744312	2L_1744312_SNP [dm3] 2L_1744312_SNP [dm6]	A	G	7.158e^-5	0.202	INTRON CG17646
3R	17000446	3R_17000446_SNP [dm3] 3R_21174724_SNP [dm6]	T	C	7.196e^-5	0.203	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16504805	3L_16504805_SNP [dm3] 3L_16511705_SNP [dm6]	A	G	7.221e^-5	0.203	INTRON CG43373
3R	12160898	3R_12160898_DEL [dm3] 3R_16335176_DEL [dm6]	ATACAATTTACTAT...	TG	7.222e^-5	0.203	INTRON Sulf1
3R	4272543	3R_4272543_SNP [dm3] 3R_8446821_SNP [dm6]	A	G	7.225e^-5	0.203	INTRON CG45263
3R	13003823	3R_13003823_DEL [dm3] 3R_17178101_DEL [dm6]	TT	T	7.275e^-5	0.204	INTRON Mur89F
3R	11550357	3R_11550357_SNP [dm3] 3R_15724635_SNP [dm6]	T	G	7.305e^-5	0.204	INTERGENIC
3R	15418489	3R_15418489_SNP [dm3] 3R_19592767_SNP [dm6]	A	T	7.334e^-5	0.204	SPLICE_SITE_REGION Dys INTRON Dys
3L	14381391	3L_14381391_SNP [dm3] 3L_14388291_SNP [dm6]	A	C	7.353e^-5	0.204	INTERGENIC
2L	9918470	2L_9918470_SNP [dm3] 2L_9918470_SNP [dm6]	G	T	7.354e^-5	0.204	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15313746	3R_15313746_SNP [dm3] 3R_19488024_SNP [dm6]	A	T	7.359e^-5	0.204	INTRON Dys	TF binding site BDTNP1_TFBS_dl
3R	23864274	3R_23864274_SNP [dm3] 3R_28038552_SNP [dm6]	A	T	7.367e^-5	0.204	INTRON CG34362
3R	9389861	3R_9389861_SNP [dm3] 3R_13564139_SNP [dm6]	G	C	7.369e^-5	0.204	INTERGENIC
3R	15815618	3R_15815618_SNP [dm3] 3R_19989896_SNP [dm6]	G	A	7.385e^-5	0.204	INTRON Hs6st
3L	16441301	3L_16441301_INS [dm3] 3L_16448201_INS [dm6]	A	CATT	7.407e^-5	0.205	INTRON CG33158 & 1 other
3R	20984251	3R_20984251_SNP [dm3] 3R_25158529_SNP [dm6]	T	C	7.426e^-5	0.205	INTERGENIC
X	3022762	X_3022762_SNP [dm3] X_3128729_SNP [dm6]	G	A	7.441e^-5	0.205	UTR_5_PRIME kirre INTRON kirre
3L	12675402	3L_12675402_SNP [dm3] 3L_12682302_SNP [dm6]	T	C	7.458e^-5	0.205	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24597597	3R_24597597_SNP [dm3] 3R_28771875_SNP [dm6]	C	T	7.475e^-5	0.205	INTERGENIC
X	7682827	X_7682827_SNP [dm3] X_7788794_SNP [dm6]	T	C	7.481e^-5	0.205	INTERGENIC
3R	14598048	3R_14598048_SNP [dm3] 3R_18772326_SNP [dm6]	C	T	7.484e^-5	0.205	INTRON CG7720
3L	20149764	3L_20149764_SNP [dm3] 3L_20156664_SNP [dm6]	T	C	7.492e^-5	0.205	INTRON CG42674	TF binding site mE1_TFBS_cad
3L	10682732	3L_10682732_DEL [dm3] 3L_10689632_DEL [dm6]	TT	T	7.492e^-5	0.205	UTR_3_PRIME simj DOWNSTREAM simj
3R	1811729	3R_1811729_INS [dm3] 3R_5986007_INS [dm6]	T	TTT	7.527e^-5	0.205	INTERGENIC
3L	14380487	3L_14380487_SNP [dm3] 3L_14387387_SNP [dm6]	T	A	7.544e^-5	0.205	INTERGENIC
3R	14593545	3R_14593545_SNP [dm3] 3R_18767823_SNP [dm6]	A	G	7.575e^-5	0.205	INTRON CG7720
3R	23817085	3R_23817085_SNP [dm3] 3R_27991363_SNP [dm6]	C	A	7.577e^-5	0.205	UPSTREAM CG4815 INTERGENIC
2L	16098974	2L_16098974_DEL [dm3] 2L_16098974_DEL [dm6]	CCAGAGTAACTCATCAAAAC...	C	7.595e^-5	0.205	INTERGENIC
3R	24018825	3R_24018825_SNP [dm3] 3R_28193103_SNP [dm6]	G	A	7.625e^-5	0.205	INTRON CG34354
2R	4402902	2R_4402902_SNP [dm3] 2R_8515397_SNP [dm6]	T	C	7.631e^-5	0.205	INTRON mtt
3L	21103744	3L_21103744_SNP [dm3] 3L_21110644_SNP [dm6]	G	A	7.631e^-5	0.205	INTRON ko	regulatory region REDfly_CRMs
X	17166838	X_17166838_SNP [dm3] X_17272805_SNP [dm6]	T	C	7.648e^-5	0.205	INTRON f	TF binding site mE1_TFBS_cad
3L	19681771	3L_19681771_SNP [dm3] 3L_19688671_SNP [dm6]	T	A	7.649e^-5	0.205	SPLICE_SITE_REGION Gbeta76C INTRON Gbeta76C	TF binding site mE1_TFBS_cad
3L	8696558	3L_8696558_DEL [dm3] 3L_8703458_DEL [dm6]	TTT	T	7.655e^-5	0.205	INTERGENIC
X	20508877	X_20508877_INS [dm3] X_20637850_INS [dm6]	G	GGCCTGTGGG	7.656e^-5	0.205	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14751575	3R_14751575_SNP [dm3] 3R_18925853_SNP [dm6]	G	A	7.661e^-5	0.205	INTRON Xrp1	TF binding site mE1_TFBS_cad
3R	15289636	3R_15289636_INS [dm3] 3R_19463914_INS [dm6]	T	TT	7.693e^-5	0.206	UPSTREAM CG6255 INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	15043851	3R_15043851_SNP [dm3] 3R_19218129_SNP [dm6]	T	C	7.718e^-5	0.206	INTRON vib
3R	11726270	3R_11726270_SNP [dm3] 3R_15900548_SNP [dm6]	T	C	7.719e^-5	0.206	INTRON glob1
X	789163	X_789163_SNP [dm3] X_895130_SNP [dm6]	A	T	7.733e^-5	0.206	UTR_3_PRIME CG11663 INTRON CG43867
3R	23870726	3R_23870726_SNP [dm3] 3R_28045004_SNP [dm6]	G	T	7.740e^-5	0.206	INTRON CG34362
2R	14219972	2R_14219972_SNP [dm3] 2R_18332467_SNP [dm6]	G	A	7.767e^-5	0.206	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	20748515	X_20748515_SNP [dm3] X_20877488_SNP [dm6]	T	A	7.780e^-5	0.206	INTRON shakB
3R	15829360	3R_15829360_SNP [dm3] 3R_20003638_SNP [dm6]	A	C	7.831e^-5	0.207	INTRON Hs6st	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15316732	3L_15316732_SNP [dm3] 3L_15323632_SNP [dm6]	T	G	7.835e^-5	0.207	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15892073	3R_15892073_SNP [dm3] 3R_20066351_SNP [dm6]	C	G	7.868e^-5	0.207	INTERGENIC
3L	8812504	3L_8812504_INS [dm3] 3L_8819404_INS [dm6]	C	TTGGTTGG	7.883e^-5	0.207	INTERGENIC
3R	15892378	3R_15892378_SNP [dm3] 3R_20066656_SNP [dm6]	T	A	7.893e^-5	0.207	INTERGENIC
X	15588780	X_15588780_SNP [dm3] X_15694747_SNP [dm6]	T	C	7.902e^-5	0.207	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15272466	3L_15272466_SNP [dm3] 3L_15279366_SNP [dm6]	A	G	7.914e^-5	0.207	INTERGENIC
3R	27175605	3R_27175605_SNP [dm3] 3R_31349883_SNP [dm6]	A	C	7.921e^-5	0.207	INTRON CG34347
3R	11663755	3R_11663755_SNP [dm3] 3R_15838033_SNP [dm6]	T	C	7.924e^-5	0.207	UPSTREAM ND23 DOWNSTREAM Pbp45 INTRON spn-E
3R	13307570	3R_13307570_SNP [dm3] 3R_17481848_SNP [dm6]	A	T	7.925e^-5	0.207	SYNONYMOUS_CODING Dscam3 DOWNSTREAM Dscam3
3R	14722910	3R_14722910_DEL [dm3] 3R_18897188_DEL [dm6]	CGGCC	C	7.959e^-5	0.208	UPSTREAM CG14297 INTERGENIC
X	6434248	X_6434248_INS [dm3] X_6540215_INS [dm6]	T	TTTCACT	7.983e^-5	0.208	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14591047	3R_14591047_SNP [dm3] 3R_18765325_SNP [dm6]	C	G	8.006e^-5	0.208	INTRON CG7720
3R	23864276	3R_23864276_SNP [dm3] 3R_28038554_SNP [dm6]	T	A	8.007e^-5	0.208	INTRON CG34362
2L	12725494	2L_12725494_SNP [dm3] 2L_12725494_SNP [dm6]	G	C	8.025e^-5	0.208	INTRON MRP
3R	15888127	3R_15888127_SNP [dm3] 3R_20062405_SNP [dm6]	G	A	8.067e^-5	0.209	INTERGENIC
3R	10854228	3R_10854228_DEL [dm3] 3R_15028506_DEL [dm6]	AAGCAGTCCAA...	A	8.085e^-5	0.209	INTERGENIC
X	14381999	X_14381999_INS [dm3] X_14487966_INS [dm6]	C	GCA	8.093e^-5	0.209	INTERGENIC
3R	23872975	3R_23872975_SNP [dm3] 3R_28047253_SNP [dm6]	C	A	8.098e^-5	0.209	UPSTREAM CG34362 INTRON CG34362
3R	21185885	3R_21185885_DEL [dm3] 3R_25360163_DEL [dm6]	TT	T	8.119e^-5	0.209	DOWNSTREAM CG11913 INTRON Fur1
3L	18321331	3L_18321331_SNP [dm3] 3L_18328231_SNP [dm6]	A	T	8.161e^-5	0.21	INTERGENIC
3R	15116454	3R_15116454_SNP [dm3] 3R_19290732_SNP [dm6]	T	C	8.166e^-5	0.21	INTERGENIC
3L	5178993	3L_5178993_INS [dm3] 3L_5185893_INS [dm6]	A	AA	8.212e^-5	0.211	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9161612	2L_9161612_SNP [dm3] 2L_9161612_SNP [dm6]	G	A	8.247e^-5	0.211	SYNONYMOUS_CODING CG32982
3R	14736199	3R_14736199_SNP [dm3] 3R_18910477_SNP [dm6]	A	G	8.260e^-5	0.211	UTR_3_PRIME EndoA DOWNSTREAM CG14291 & 1 other
3R	14736200	3R_14736200_SNP [dm3] 3R_18910478_SNP [dm6]	G	C	8.260e^-5	0.211	UTR_3_PRIME EndoA DOWNSTREAM CG14291 & 1 other
2L	7337138	2L_7337138_SNP [dm3] 2L_7337138_SNP [dm6]	C	T	8.264e^-5	0.211	INTRON Wnt6
3R	23475356	3R_23475356_DEL [dm3] 3R_27649634_DEL [dm6]	AA	A	8.288e^-5	0.211	UTR_5_PRIME tau INTRON tau
3L	1897164	3L_1897164_SNP [dm3] 3L_1897164_SNP [dm6]	A	G	8.305e^-5	0.211	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2R	10632528	2R_10632528_SNP [dm3] 2R_14745023_SNP [dm6]	A	T	8.315e^-5	0.211	UPSTREAM Dro INTRON CG12858
3R	15004646	3R_15004646_SNP [dm3] 3R_19178924_SNP [dm6]	G	A	8.321e^-5	0.211	SYNONYMOUS_CODING CG5555 DOWNSTREAM CG14282	TF binding site mE1_TFBS_sens
2L	21012191	2L_21012191_SNP [dm3] 2L_21012191_SNP [dm6]	T	A	8.324e^-5	0.211	INTRON CG42238
3R	23816575	3R_23816575_SNP [dm3] 3R_27990853_SNP [dm6]	G	A	8.326e^-5	0.211	UPSTREAM CG4815 INTERGENIC
3R	23876759	3R_23876759_DEL [dm3] 3R_28051037_DEL [dm6]	CATGC	C	8.333e^-5	0.211	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23876764	3R_23876764_INS [dm3] 3R_28051042_INS [dm6]	T	TAAACGAAA	8.333e^-5	0.211	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7899276	2L_7899276_DEL [dm3] 2L_7899276_DEL [dm6]	AAAATATACT	A	8.361e^-5	0.211	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3497387	3L_3497387_SNP [dm3] 3L_3497387_SNP [dm6]	T	A	8.402e^-5	0.212	INTRON CG42324
3L	4028554	3L_4028554_SNP [dm3] 3L_4028554_SNP [dm6]	T	G	8.407e^-5	0.212	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14723415	3R_14723415_SNP [dm3] 3R_18897693_SNP [dm6]	T	A	8.438e^-5	0.212	UPSTREAM CG14297 INTERGENIC
2L	20961879	2L_20961879_SNP [dm3] 2L_20961879_SNP [dm6]	A	G	8.450e^-5	0.212	INTERGENIC
2R	7332448	2R_7332448_SNP [dm3] 2R_11444943_SNP [dm6]	G	A	8.481e^-5	0.213	INTRON qvr
X	20931475	X_20931475_DEL [dm3] X_21060448_DEL [dm6]	GAAAC	A	8.487e^-5	0.213	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run
X	14321465	X_14321465_SNP [dm3] X_14427432_SNP [dm6]	T	A	8.509e^-5	0.213	INTRON dpr8
3R	15891876	3R_15891876_SNP [dm3] 3R_20066154_SNP [dm6]	T	A	8.532e^-5	0.213	INTERGENIC
X	9572170	X_9572170_SNP [dm3] X_9678137_SNP [dm6]	T	C	8.542e^-5	0.213	NON_SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15027979	3R_15027979_SNP [dm3] 3R_19202257_SNP [dm6]	T	A	8.604e^-5	0.213	INTERGENIC
3R	14536979	3R_14536979_SNP [dm3] 3R_18711257_SNP [dm6]	T	C	8.609e^-5	0.213	INTRON VAChT & 1 other
3R	15180870	3R_15180870_SNP [dm3] 3R_19355148_SNP [dm6]	A	T	8.620e^-5	0.213	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	12365028	2L_12365028_SNP [dm3] 2L_12365028_SNP [dm6]	A	G	8.621e^-5	0.213	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3R	9830152	3R_9830152_SNP [dm3] 3R_14004430_SNP [dm6]	A	G	8.660e^-5	0.213	INTRON rdx
X	19762749	X_19762749_SNP [dm3] X_19868716_SNP [dm6]	A	T	8.666e^-5	0.213	NON_SYNONYMOUS_CODING Hers	TF binding site mE1_TFBS_chinmo
2L	3911357	2L_3911357_SNP [dm3] 2L_3911357_SNP [dm6]	T	A	8.669e^-5	0.213	DOWNSTREAM CG31773 INTRON fred
X	784433	X_784433_SNP [dm3] X_890400_SNP [dm6]	G	T	8.679e^-5	0.213	INTRON CG43867
3R	11711510	3R_11711510_SNP [dm3] 3R_15885788_SNP [dm6]	C	G	8.683e^-5	0.213	INTERGENIC
3R	14292149	3R_14292149_SNP [dm3] 3R_18466427_SNP [dm6]	C	A	8.689e^-5	0.213	INTRON fru
3R	11538674	3R_11538674_SNP [dm3] 3R_15712952_SNP [dm6]	C	T	8.723e^-5	0.213	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15181028	3R_15181028_SNP [dm3] 3R_19355306_SNP [dm6]	C	T	8.737e^-5	0.213	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	20830439	3L_20830439_INS [dm3] 3L_20837339_INS [dm6]	C	CCTATTAAGACCTATTACCT...	8.750e^-5	0.213	UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288 INTERGENIC
X	20748517	X_20748517_SNP [dm3] X_20877490_SNP [dm6]	C	G	8.773e^-5	0.213	INTRON shakB
X	15588777	X_15588777_SNP [dm3] X_15694744_SNP [dm6]	G	C	8.787e^-5	0.213	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10392056	3L_10392056_SNP [dm3] 3L_10398956_SNP [dm6]	G	C	8.816e^-5	0.213	INTERGENIC
3R	1750922	3R_1750922_INS [dm3] 3R_5925200_INS [dm6]	A	ATAATAATAATAATAACATA...	8.826e^-5	0.213	INTRON CG34113
3R	4039680	3R_4039680_SNP [dm3] 3R_8213958_SNP [dm6]	C	A	8.835e^-5	0.213	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25519796	3R_25519796_SNP [dm3] 3R_29694074_SNP [dm6]	C	T	8.836e^-5	0.213	INTRON dmrt99B
3R	15877349	3R_15877349_DEL [dm3] 3R_20051627_DEL [dm6]	TCAA	T	8.861e^-5	0.213	INTRON CG17193
3R	15877356	3R_15877356_DEL [dm3] 3R_20051634_DEL [dm6]	AAACGACACATCC...	A	8.861e^-5	0.213	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15877373	3R_15877373_MNP [dm3] 3R_20051651_MNP [dm6]	GCA	TAT	8.861e^-5	0.213	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15042218	3R_15042218_SNP [dm3] 3R_19216496_SNP [dm6]	G	T	8.895e^-5	0.213	UTR_3_PRIME vib
3R	25604867	3R_25604867_SNP [dm3] 3R_29779145_SNP [dm6]	A	C	8.908e^-5	0.213	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
3R	11425349	3R_11425349_SNP [dm3] 3R_15599627_SNP [dm6]	A	T	8.910e^-5	0.213	INTERGENIC
3R	15195863	3R_15195863_SNP [dm3] 3R_19370141_SNP [dm6]	T	C	8.915e^-5	0.213	INTRON Ino80
3L	1897202	3L_1897202_SNP [dm3] 3L_1897202_SNP [dm6]	T	C	8.915e^-5	0.213	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	16423289	3L_16423289_DEL [dm3] 3L_16430189_DEL [dm6]	TT	T	8.923e^-5	0.213	INTRON CG33158 & 1 other
X	9568501	X_9568501_INS [dm3] X_9674468_INS [dm6]	T	TGTT	8.933e^-5	0.213	INTRON nej	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13538346	2L_13538346_DEL [dm3] 2L_13538346_DEL [dm6]	AAAACTTCAAGCCAGC...	A	8.937e^-5	0.213	INTRON B4
2L	13538364	2L_13538364_DEL [dm3] 2L_13538364_DEL [dm6]	TATC	T	8.937e^-5	0.213	INTRON B4
3R	23150981	3R_23150981_SNP [dm3] 3R_27325259_SNP [dm6]	T	C	8.963e^-5	0.213	INTERGENIC
3R	9941230	3R_9941230_SNP [dm3] 3R_14115508_SNP [dm6]	T	C	8.972e^-5	0.213	INTRON Kif19A	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	10364229	3R_10364229_SNP [dm3] 3R_14538507_SNP [dm6]	A	G	8.975e^-5	0.213	INTRON Pde6
3R	23831554	3R_23831554_DEL [dm3] 3R_28005832_DEL [dm6]	CAT	C	8.984e^-5	0.213	INTERGENIC
2R	6093128	2R_6093128_SNP [dm3] 2R_10205623_SNP [dm6]	G	T	8.991e^-5	0.213	UTR_3_PRIME Hr46 & 1 other
3L	3524472	3L_3524472_SNP [dm3] 3L_3524472_SNP [dm6]	A	T	9.003e^-5	0.213	UPSTREAM CR45043 INTRON Eip63E
3R	25155824	3R_25155824_SNP [dm3] 3R_29330102_SNP [dm6]	C	T	9.043e^-5	0.213	INTERGENIC
X	19264271	X_19264271_SNP [dm3] X_19370238_SNP [dm6]	C	T	9.047e^-5	0.213	INTRON kek5
3R	17005388	3R_17005388_SNP [dm3] 3R_21179666_SNP [dm6]	G	A	9.054e^-5	0.213	INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
2L	7901423	2L_7901423_DEL [dm3] 2L_7901423_DEL [dm6]	CAG	C	9.058e^-5	0.213	INTRON Snoo
2R	15731993	2R_15731993_SNP [dm3] 2R_19844488_SNP [dm6]	A	G	9.066e^-5	0.213	UPSTREAM CG44569 INTERGENIC
3R	7813749	3R_7813749_SNP [dm3] 3R_11988027_SNP [dm6]	C	T	9.068e^-5	0.213	INTRON mfas
3R	15313788	3R_15313788_DEL [dm3] 3R_19488066_DEL [dm6]	TT	T	9.072e^-5	0.213	INTRON Dys	TF binding site BDTNP1_TFBS_dl
3R	10139995	3R_10139995_SNP [dm3] 3R_14314273_SNP [dm6]	T	C	9.079e^-5	0.213	UTR_3_PRIME CG31321 UPSTREAM Crz
3R	23872772	3R_23872772_SNP [dm3] 3R_28047050_SNP [dm6]	G	A	9.082e^-5	0.213	UPSTREAM CG34362 INTRON CG34362
3L	2644689	3L_2644689_SNP [dm3] 3L_2644689_SNP [dm6]	T	C	9.107e^-5	0.213	UPSTREAM CG1143 INTERGENIC
3L	12358095	3L_12358095_SNP [dm3] 3L_12364995_SNP [dm6]	T	A	9.116e^-5	0.213	INTERGENIC
3L	17748185	3L_17748185_SNP [dm3] 3L_17755085_SNP [dm6]	G	A	9.121e^-5	0.213	SYNONYMOUS_CODING Msi INTRON Adgf-A
2L	12301410	2L_12301410_SNP [dm3] 2L_12301410_SNP [dm6]	A	T	9.140e^-5	0.213	INTRON aret
3L	2281113	3L_2281113_INS [dm3] 3L_2281113_INS [dm6]	T	TGTTTGTAATGTTGTTATGT...	9.143e^-5	0.213	INTERGENIC
2R	7084996	2R_7084996_DEL [dm3] 2R_11197491_DEL [dm6]	TATTCTT	T	9.152e^-5	0.213	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	16529417	3L_16529417_DEL [dm3] 3L_16536317_DEL [dm6]	AC	A	9.154e^-5	0.213	INTRON CG43373
3R	11713752	3R_11713752_SNP [dm3] 3R_15888030_SNP [dm6]	G	A	9.166e^-5	0.213	INTERGENIC
3R	15890709	3R_15890709_SNP [dm3] 3R_20064987_SNP [dm6]	G	A	9.173e^-5	0.213	INTERGENIC
3R	15815375	3R_15815375_SNP [dm3] 3R_19989653_SNP [dm6]	A	C	9.177e^-5	0.213	INTRON Hs6st
2L	10721979	2L_10721979_DEL [dm3] 2L_10721979_DEL [dm6]	GTTTTA	G	9.185e^-5	0.213	INTERGENIC
3R	13969223	3R_13969223_SNP [dm3] 3R_18143501_SNP [dm6]	G	A	9.243e^-5	0.214	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18227338	3L_18227338_SNP [dm3] 3L_18234238_SNP [dm6]	C	T	9.251e^-5	0.214	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14675478	3R_14675478_SNP [dm3] 3R_18849756_SNP [dm6]	A	C	9.277e^-5	0.214	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13067668	3R_13067668_SNP [dm3] 3R_17241946_SNP [dm6]	C	A	9.286e^-5	0.214	INTRON beat-IIb
3R	10597327	3R_10597327_INS [dm3] 3R_14771605_INS [dm6]	A	ACTCA	9.291e^-5	0.214	INTRON jvl
3R	23840899	3R_23840899_SNP [dm3] 3R_28015177_SNP [dm6]	A	G	9.365e^-5	0.215	INTERGENIC
3R	24820639	3R_24820639_SNP [dm3] 3R_28994917_SNP [dm6]	T	C	9.368e^-5	0.215	INTRON wat	TF binding site mE1_TFBS_HSA
3R	11663191	3R_11663191_SNP [dm3] 3R_15837469_SNP [dm6]	G	T	9.373e^-5	0.215	UTR_5_PRIME spn-E UPSTREAM ND23 DOWNSTREAM Pbp45	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	4144658	3R_4144658_DEL [dm3] 3R_8318936_DEL [dm6]	TT	T	9.399e^-5	0.216	UTR_3_PRIME Ctr1B DOWNSTREAM CR45215 & 1 other
2R	6984771	2R_6984771_SNP [dm3] 2R_11097266_SNP [dm6]	A	G	9.444e^-5	0.216	INTRON luna
3R	15373130	3R_15373130_SNP [dm3] 3R_19547408_SNP [dm6]	T	G	9.448e^-5	0.216	INTRON Dys
3R	13969227	3R_13969227_SNP [dm3] 3R_18143505_SNP [dm6]	T	A	9.450e^-5	0.216	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22582804	3R_22582804_SNP [dm3] 3R_26757082_SNP [dm6]	G	T	9.463e^-5	0.216	EXON CR45562
3L	12109755	3L_12109755_SNP [dm3] 3L_12116655_SNP [dm6]	T	A	9.464e^-5	0.216	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16210044	3R_16210044_SNP [dm3] 3R_20384322_SNP [dm6]	C	T	9.485e^-5	0.216	INTRON Gfrl
3R	23858670	3R_23858670_SNP [dm3] 3R_28032948_SNP [dm6]	G	T	9.496e^-5	0.216	INTRON CG34362
3L	19922325	3L_19922325_DEL [dm3] 3L_19929225_DEL [dm6]	AA	A	9.514e^-5	0.216	UPSTREAM CG8004 INTRON RhoGDI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9393760	3R_9393760_DEL [dm3] 3R_13568038_DEL [dm6]	TTT	A	9.526e^-5	0.216	INTERGENIC
3R	10628528	3R_10628528_SNP [dm3] 3R_14802806_SNP [dm6]	G	C	9.526e^-5	0.216	SYNONYMOUS_CODING CG14857
2R	10632529	2R_10632529_SNP [dm3] 2R_14745024_SNP [dm6]	A	C	9.543e^-5	0.216	UPSTREAM Dro INTRON CG12858
3R	14747994	3R_14747994_SNP [dm3] 3R_18922272_SNP [dm6]	G	C	9.545e^-5	0.216	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
X	14321507	X_14321507_SNP [dm3] X_14427474_SNP [dm6]	A	G	9.590e^-5	0.216	INTRON dpr8
3R	24803915	3R_24803915_SNP [dm3] 3R_28978193_SNP [dm6]	T	C	9.594e^-5	0.216	INTERGENIC
2L	14228977	2L_14228977_SNP [dm3] 2L_14228977_SNP [dm6]	G	T	9.639e^-5	0.217	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6317088	3L_6317088_SNP [dm3] 3L_6323988_SNP [dm6]	T	C	9.687e^-5	0.217	INTERGENIC
3L	12106644	3L_12106644_DEL [dm3] 3L_12113544_DEL [dm6]	GG	G	9.690e^-5	0.217	INTERGENIC
3R	15246130	3R_15246130_SNP [dm3] 3R_19420408_SNP [dm6]	T	G	9.691e^-5	0.217	INTRON CG31221
2R	1242672	2R_1242672_SNP [dm3] 2R_5355167_SNP [dm6]	A	T	9.697e^-5	0.217	DOWNSTREAM CG10396 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27202376	3R_27202376_SNP [dm3] 3R_31376654_SNP [dm6]	C	T	9.702e^-5	0.217	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9105799	X_9105799_DEL [dm3] X_9211766_DEL [dm6]	TT	T	9.720e^-5	0.217	UPSTREAM CG12119 INTERGENIC
3L	18270901	3L_18270901_SNP [dm3] 3L_18277801_SNP [dm6]	G	A	9.724e^-5	0.217	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15004634	3R_15004634_SNP [dm3] 3R_19178912_SNP [dm6]	G	A	9.750e^-5	0.217	SYNONYMOUS_CODING CG5555 DOWNSTREAM CG14282	TF binding site mE1_TFBS_sens
3R	3263231	3R_3263231_SNP [dm3] 3R_7437509_SNP [dm6]	G	A	9.780e^-5	0.218	INTERGENIC
2R	8832624	2R_8832624_SNP [dm3] 2R_12945119_SNP [dm6]	C	A	9.781e^-5	0.218	SYNONYMOUS_CODING Mdr49 UPSTREAM Mdr49	TF binding site mE1_TFBS_HSA
3L	3134834	3L_3134834_SNP [dm3] 3L_3134834_SNP [dm6]	T	C	9.811e^-5	0.218	UPSTREAM CG11537 INTRON CG11537
3R	22733239	3R_22733239_SNP [dm3] 3R_26907517_SNP [dm6]	C	G	9.820e^-5	0.218	INTRON T48
3R	14731756	3R_14731756_SNP [dm3] 3R_18906034_SNP [dm6]	C	A	9.837e^-5	0.218	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12931028	2L_12931028_SNP [dm3] 2L_12931028_SNP [dm6]	C	T	9.841e^-5	0.218	UPSTREAM CR44183 INTERGENIC
3R	11773352	3R_11773352_SNP [dm3] 3R_15947630_SNP [dm6]	G	A	9.856e^-5	0.218	INTRON Sap47
2R	1689055	2R_1689055_DEL [dm3] 2R_5801550_DEL [dm6]	TATGTACATATGTGTATGT...	T	9.876e^-5	0.218	INTERGENIC
3R	9828170	3R_9828170_DEL [dm3] 3R_14002448_DEL [dm6]	TT	T	9.894e^-5	0.218	INTRON rdx
2R	8402801	2R_8402801_DEL [dm3] 2R_12515296_DEL [dm6]	TT	T	9.989e^-5	0.22	UPSTREAM CG13151 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3R	7966141	3R_7966141_DEL [dm3] 3R_12140419_DEL [dm6]	AA	A	1.001e^-4	0.22	INTRON dpr15
3L	10373509	3L_10373509_SNP [dm3] 3L_10380409_SNP [dm6]	A	T	1.001e^-4	0.22	INTERGENIC
3R	15877380	3R_15877380_SNP [dm3] 3R_20051658_SNP [dm6]	T	A	1.001e^-4	0.22	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	11861265	3R_11861265_DEL [dm3] 3R_16035543_DEL [dm6]	ATCCATAGAT	C	1.002e^-4	0.22	INTRON pnr	TF binding site BDTNP1_TFBS_dl
2R	10006493	2R_10006493_SNP [dm3] 2R_14118988_SNP [dm6]	G	A	1.003e^-4	0.22	INTRON Prosap
2R	14758566	2R_14758566_SNP [dm3] 2R_18871061_SNP [dm6]	C	T	1.006e^-4	0.22	INTERGENIC
3R	15145862	3R_15145862_SNP [dm3] 3R_19320140_SNP [dm6]	T	G	1.008e^-4	0.22	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22532840	3R_22532840_DEL [dm3] 3R_26707118_DEL [dm6]	GAGTATAG	G	1.009e^-4	0.22	INTRON amon
3L	12109704	3L_12109704_SNP [dm3] 3L_12116604_SNP [dm6]	G	A	1.012e^-4	0.22	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15068368	3R_15068368_SNP [dm3] 3R_19242646_SNP [dm6]	C	T	1.017e^-4	0.22	SYNONYMOUS_CODING unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15313751	3R_15313751_SNP [dm3] 3R_19488029_SNP [dm6]	A	G	1.017e^-4	0.22	INTRON Dys	TF binding site BDTNP1_TFBS_dl
3R	11662065	3R_11662065_SNP [dm3] 3R_15836343_SNP [dm6]	G	T	1.017e^-4	0.22	UPSTREAM mir-4911 DOWNSTREAM Arpc3A INTRON ND23 EXON mir-4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19681374	3L_19681374_SNP [dm3] 3L_19688274_SNP [dm6]	G	C	1.019e^-4	0.22	SYNONYMOUS_CODING Gbeta76C UPSTREAM CG8765	TF binding site mE1_TFBS_cad
3R	22225396	3R_22225396_SNP [dm3] 3R_26399674_SNP [dm6]	G	A	1.019e^-4	0.22	INTERGENIC
3R	24659953	3R_24659953_SNP [dm3] 3R_28834231_SNP [dm6]	G	A	1.020e^-4	0.22	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	15874689	3R_15874689_SNP [dm3] 3R_20048967_SNP [dm6]	G	C	1.021e^-4	0.22	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
3R	22532763	3R_22532763_SNP [dm3] 3R_26707041_SNP [dm6]	T	C	1.021e^-4	0.22	INTRON amon
3L	22962906	3L_22962906_SNP [dm3] 3L_22969806_SNP [dm6]	C	T	1.022e^-4	0.22	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	16186056	3L_16186056_SNP [dm3] 3L_16192956_SNP [dm6]	C	A	1.022e^-4	0.22	INTERGENIC
X	763145	X_763145_SNP [dm3] X_869112_SNP [dm6]	A	T	1.024e^-4	0.22	INTRON CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23257121	3R_23257121_SNP [dm3] 3R_27431399_SNP [dm6]	G	T	1.024e^-4	0.22	INTRON side
3R	3057501	3R_3057501_SNP [dm3] 3R_7231779_SNP [dm6]	T	C	1.025e^-4	0.22	INTRON CG14608
2L	9320520	2L_9320520_INS [dm3] 2L_9320520_INS [dm6]	C	CTTGAA	1.029e^-4	0.221	INTERGENIC
2R	20128902	2R_20128902_SNP [dm3] 2R_24241379_SNP [dm6]	G	A	1.029e^-4	0.221	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	21095503	3L_21095503_SNP [dm3] 3L_21102403_SNP [dm6]	C	G	1.031e^-4	0.221	INTRON ko	regulatory region REDfly_CRMs
X	13639533	X_13639533_SNP [dm3] X_13745500_SNP [dm6]	G	A	1.031e^-4	0.221	UPSTREAM Grip91 DOWNSTREAM Pdcd4 & 1 other INTERGENIC
3L	17748386	3L_17748386_SNP [dm3] 3L_17755286_SNP [dm6]	C	G	1.035e^-4	0.221	SYNONYMOUS_CODING Msi INTRON Adgf-A
3R	12185008	3R_12185008_DEL [dm3] 3R_16359286_DEL [dm6]	TT	T	1.037e^-4	0.221	UTR_5_PRIME CG17931 INTRON CG42446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9178723	X_9178723_SNP [dm3] X_9284690_SNP [dm6]	C	T	1.039e^-4	0.221	UTR_5_PRIME lz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl
X	19436752	X_19436752_INS [dm3] X_19542719_INS [dm6]	T	TCCTATAATAAAGT...	1.041e^-4	0.221	INTRON CG32532
3L	22999455	3L_22999455_SNP [dm3] 3L_23006355_SNP [dm6]	T	C	1.041e^-4	0.221	INTRON nrm	transposable element FlyBase
3R	21438218	3R_21438218_SNP [dm3] 3R_25612496_SNP [dm6]	A	G	1.045e^-4	0.222	INTRON Npl4
X	811692	X_811692_SNP [dm3] X_917659_SNP [dm6]	C	T	1.048e^-4	0.222	INTRON CG43867
2L	9166392	2L_9166392_SNP [dm3] 2L_9166392_SNP [dm6]	C	T	1.051e^-4	0.222	UTR_5_PRIME CG9586 UPSTREAM tai DOWNSTREAM CG13108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15180471	3R_15180471_SNP [dm3] 3R_19354749_SNP [dm6]	C	T	1.051e^-4	0.222	UTR_3_PRIME CG43203	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	15147138	X_15147138_INS [dm3] X_15253105_INS [dm6]	A	AA	1.052e^-4	0.222	INTERGENIC
3R	15877862	3R_15877862_SNP [dm3] 3R_20052140_SNP [dm6]	C	T	1.053e^-4	0.222	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	20442439	3R_20442439_SNP [dm3] 3R_24616717_SNP [dm6]	A	T	1.054e^-4	0.222	NON_SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19067504	2R_19067504_SNP [dm3] 2R_23179981_SNP [dm6]	G	C	1.054e^-4	0.222	INTRON CG34371
3R	25487254	3R_25487254_SNP [dm3] 3R_29661532_SNP [dm6]	T	A	1.055e^-4	0.222	INTERGENIC
3L	14908900	3L_14908900_DEL [dm3] 3L_14915800_DEL [dm6]	AA	A	1.055e^-4	0.222	INTRON DCX-EMAP
2L	20970422	2L_20970422_SNP [dm3] 2L_20970422_SNP [dm6]	A	T	1.056e^-4	0.222	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	17478113	3R_17478113_SNP [dm3] 3R_21652391_SNP [dm6]	A	G	1.064e^-4	0.223	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10588672	3R_10588672_SNP [dm3] 3R_14762950_SNP [dm6]	C	G	1.068e^-4	0.224	INTRON jvl
3L	11652860	3L_11652860_SNP [dm3] 3L_11659760_SNP [dm6]	C	T	1.070e^-4	0.224	INTRON CG32085
3L	12065825	3L_12065825_SNP [dm3] 3L_12072725_SNP [dm6]	A	T	1.073e^-4	0.224	INTRON Sema-5c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	13340988	3L_13340988_INS [dm3] 3L_13347888_INS [dm6]	A	ACCTACCGGCCGATCAGTCT...	1.074e^-4	0.224	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10373580	3L_10373580_SNP [dm3] 3L_10380480_SNP [dm6]	C	G	1.075e^-4	0.224	INTERGENIC
3R	24999736	3R_24999736_SNP [dm3] 3R_29174014_SNP [dm6]	G	A	1.076e^-4	0.224	INTRON CG14509	TF binding site mE1_TFBS_cad
3R	1915560	3R_1915560_DEL [dm3] 3R_6089838_DEL [dm6]	CG	A	1.078e^-4	0.224	INTRON Gasp
3R	15418503	3R_15418503_SNP [dm3] 3R_19592781_SNP [dm6]	A	T	1.079e^-4	0.224	INTRON Dys
3L	12065697	3L_12065697_SNP [dm3] 3L_12072597_SNP [dm6]	G	A	1.080e^-4	0.224	INTRON Sema-5c
3L	1033857	3L_1033857_SNP [dm3] 3L_1033857_SNP [dm6]	G	T	1.083e^-4	0.225	UTR_5_PRIME trio UPSTREAM CG9205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	15033462	3R_15033462_SNP [dm3] 3R_19207740_SNP [dm6]	C	A	1.087e^-4	0.225	INTERGENIC
3R	14737156	3R_14737156_SNP [dm3] 3R_18911434_SNP [dm6]	C	G	1.088e^-4	0.225	SYNONYMOUS_CODING CG14291 DOWNSTREAM EndoA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14070781	2R_14070781_SNP [dm3] 2R_18183276_SNP [dm6]	G	A	1.088e^-4	0.225	SYNONYMOUS_CODING CG5721 DOWNSTREAM nopo	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	15610598	3L_15610598_SNP [dm3] 3L_15617498_SNP [dm6]	A	G	1.090e^-4	0.225	INTRON comm3
3L	4088767	3L_4088767_SNP [dm3] 3L_4088767_SNP [dm6]	G	A	1.091e^-4	0.225	UPSTREAM CG14989 & 1 other INTRON CG14989
X	20748514	X_20748514_SNP [dm3] X_20877487_SNP [dm6]	T	A	1.092e^-4	0.225	INTRON shakB
3R	17059445	3R_17059445_SNP [dm3] 3R_21233723_SNP [dm6]	C	T	1.096e^-4	0.226	INTRON e	regulatory region REDfly_CRMs
3R	20432909	3R_20432909_SNP [dm3] 3R_24607187_SNP [dm6]	C	T	1.100e^-4	0.226	INTRON mld
3R	14599247	3R_14599247_DEL [dm3] 3R_18773525_DEL [dm6]	GA	G	1.103e^-4	0.226	INTRON CG7720
3R	14602203	3R_14602203_SNP [dm3] 3R_18776481_SNP [dm6]	A	G	1.104e^-4	0.226	INTRON CG7720
3R	6840420	3R_6840420_SNP [dm3] 3R_11014698_SNP [dm6]	G	T	1.104e^-4	0.226	INTRON CG34114
3R	15528597	3R_15528597_DEL [dm3] 3R_19702875_DEL [dm6]	AATG	A	1.104e^-4	0.226	INTERGENIC
3R	15313777	3R_15313777_SNP [dm3] 3R_19488055_SNP [dm6]	T	C	1.105e^-4	0.226	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2R	2573299	2R_2573299_SNP [dm3] 2R_6685794_SNP [dm6]	T	A	1.110e^-4	0.226	INTRON CG9422 & 1 other
3R	23822166	3R_23822166_SNP [dm3] 3R_27996444_SNP [dm6]	G	A	1.111e^-4	0.226	INTERGENIC
3R	15068362	3R_15068362_SNP [dm3] 3R_19242640_SNP [dm6]	T	C	1.112e^-4	0.226	SYNONYMOUS_CODING unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19358438	2R_19358438_INS [dm3] 2R_23470915_INS [dm6]	T	TAGAT	1.113e^-4	0.226	INTRON CG43795 & 1 other
2L	7720042	2L_7720042_SNP [dm3] 2L_7720042_SNP [dm6]	A	T	1.114e^-4	0.226	NON_SYNONYMOUS_CODING CG13794 UPSTREAM CG13793
3R	16210960	3R_16210960_DEL [dm3] 3R_20385238_DEL [dm6]	AA	A	1.117e^-4	0.226	INTRON Gfrl
2L	3683430	2L_3683430_SNP [dm3] 2L_3683430_SNP [dm6]	T	G	1.118e^-4	0.226	INTRON CG34340
3R	14915383	3R_14915383_INS [dm3] 3R_19089661_INS [dm6]	A	AA	1.118e^-4	0.226	INTRON cdi
2L	12275284	2L_12275284_INS [dm3] 2L_12275284_INS [dm6]	A	AAAA	1.119e^-4	0.226	INTRON aret
3R	23630129	3R_23630129_SNP [dm3] 3R_27804407_SNP [dm6]	C	T	1.120e^-4	0.226	SYNONYMOUS_CODING CG34353
3L	10161442	3L_10161442_SNP [dm3] 3L_10168342_SNP [dm6]	G	T	1.120e^-4	0.226	INTRON dpr10
X	20758934	X_20758934_SNP [dm3] X_20887907_SNP [dm6]	G	T	1.121e^-4	0.226	INTRON shakB
2L	19419692	2L_19419692_SNP [dm3] 2L_19419692_SNP [dm6]	G	A	1.121e^-4	0.226	UTR_3_PRIME lectin-37Db DOWNSTREAM lectin-37Da INTRON Pax
3R	15875938	3R_15875938_SNP [dm3] 3R_20050216_SNP [dm6]	A	T	1.122e^-4	0.226	INTRON CG17193
3R	21185842	3R_21185842_SNP [dm3] 3R_25360120_SNP [dm6]	T	A	1.122e^-4	0.226	DOWNSTREAM CG11913 INTRON Fur1
2R	16817816	2R_16817816_SNP [dm3] 2R_20930311_SNP [dm6]	G	A	1.125e^-4	0.226	INTRON Rx
3R	17826620	3R_17826620_SNP [dm3] 3R_22000898_SNP [dm6]	A	C	1.129e^-4	0.226	INTRON Eip93F
3L	19220918	3L_19220918_SNP [dm3] 3L_19227818_SNP [dm6]	G	A	1.129e^-4	0.226	INTRON fz2
3R	13307427	3R_13307427_SNP [dm3] 3R_17481705_SNP [dm6]	T	G	1.129e^-4	0.226	DOWNSTREAM Dscam3 INTRON Dscam3
3R	25156119	3R_25156119_SNP [dm3] 3R_29330397_SNP [dm6]	G	A	1.131e^-4	0.226	INTERGENIC
3R	12706076	3R_12706076_DEL [dm3] 3R_16880354_DEL [dm6]	TT	T	1.132e^-4	0.226	INTRON iab-8
2R	9654657	2R_9654657_SNP [dm3] 2R_13767152_SNP [dm6]	G	T	1.133e^-4	0.226	INTERGENIC
3R	24174473	3R_24174473_SNP [dm3] 3R_28348751_SNP [dm6]	G	A	1.133e^-4	0.226	INTERGENIC
3R	15876004	3R_15876004_SNP [dm3] 3R_20050282_SNP [dm6]	G	C	1.134e^-4	0.226	INTRON CG17193
3R	3287078	3R_3287078_SNP [dm3] 3R_7461356_SNP [dm6]	G	T	1.134e^-4	0.226	INTERGENIC
3L	12384155	3L_12384155_SNP [dm3] 3L_12391055_SNP [dm6]	C	A	1.136e^-4	0.226	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15313697	3R_15313697_SNP [dm3] 3R_19487975_SNP [dm6]	A	G	1.139e^-4	0.226	INTRON Dys
3L	8564713	3L_8564713_SNP [dm3] 3L_8571613_SNP [dm6]	C	T	1.139e^-4	0.226	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo
3R	15669921	3R_15669921_SNP [dm3] 3R_19844199_SNP [dm6]	T	G	1.142e^-4	0.226	INTERGENIC
2L	16636543	2L_16636543_SNP [dm3] 2L_16636543_SNP [dm6]	A	T	1.145e^-4	0.226	INTRON CG42389
3L	18483478	3L_18483478_SNP [dm3] 3L_18490378_SNP [dm6]	T	A	1.145e^-4	0.226	INTRON AstC-R2
3L	5372236	3L_5372236_SNP [dm3] 3L_5379136_SNP [dm6]	T	C	1.146e^-4	0.226	DOWNSTREAM CR45743 INTRON Ir64a
2R	13244449	2R_13244449_INS [dm3] 2R_17356944_INS [dm6]	A	ACAAGCGTATGTATAGTTA...	1.147e^-4	0.226	INTRON mbl
3R	11606351	3R_11606351_SNP [dm3] 3R_15780629_SNP [dm6]	T	C	1.149e^-4	0.227	SYNONYMOUS_CODING CG5614	TF binding site mE1_TFBS_sens
X	14260433	X_14260433_SNP [dm3] X_14366400_SNP [dm6]	T	A	1.152e^-4	0.227	INTRON dpr8
2R	18130682	2R_18130682_SNP [dm3] 2R_22243177_SNP [dm6]	G	C	1.158e^-4	0.228	UPSTREAM dve INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15148892	3R_15148892_SNP [dm3] 3R_19323170_SNP [dm6]	A	G	1.162e^-4	0.228	INTRON Dl	TF binding site BDTNP1_TFBS_dl
2R	19410640	2R_19410640_SNP [dm3] 2R_23523117_SNP [dm6]	T	A	1.163e^-4	0.228	UPSTREAM mi INTRON RabX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	3061678	2R_3061678_SNP [dm3] 2R_7174173_SNP [dm6]	A	G	1.165e^-4	0.228	INTRON pk	TF binding site mE1_TFBS_cad
3R	16996988	3R_16996988_SNP [dm3] 3R_21171266_SNP [dm6]	A	T	1.166e^-4	0.228	INTRON SNF4Agamma
3R	16643678	3R_16643678_SNP [dm3] 3R_20817956_SNP [dm6]	A	C	1.167e^-4	0.228	INTRON CG17270
3R	10626662	3R_10626662_INS [dm3] 3R_14800940_INS [dm6]	A	AA	1.168e^-4	0.228	UTR_3_PRIME CG14856 UPSTREAM CG14857
3R	9379681	3R_9379681_SNP [dm3] 3R_13553959_SNP [dm6]	T	A	1.168e^-4	0.228	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15817656	3R_15817656_SNP [dm3] 3R_19991934_SNP [dm6]	C	A	1.172e^-4	0.228	INTRON Hs6st
3R	10042086	3R_10042086_SNP [dm3] 3R_14216364_SNP [dm6]	G	A	1.173e^-4	0.228	SYNONYMOUS_CODING CG9649
3R	27164066	3R_27164066_SNP [dm3] 3R_31338344_SNP [dm6]	A	T	1.173e^-4	0.228	INTRON CG34347
3R	25402113	3R_25402113_SNP [dm3] 3R_29576391_SNP [dm6]	G	T	1.178e^-4	0.228	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA
3R	14670281	3R_14670281_SNP [dm3] 3R_18844559_SNP [dm6]	C	T	1.180e^-4	0.228	INTRON CG18208
3L	6519178	3L_6519178_SNP [dm3] 3L_6526078_SNP [dm6]	A	G	1.181e^-4	0.228	INTRON sfl
3R	9443692	3R_9443692_SNP [dm3] 3R_13617970_SNP [dm6]	A	T	1.181e^-4	0.228	EXON CR45680
3R	26658101	3R_26658101_DEL [dm3] 3R_30832379_DEL [dm6]	AAA	T	1.183e^-4	0.228	INTRON CG15544
3R	14743483	3R_14743483_SNP [dm3] 3R_18917761_SNP [dm6]	A	T	1.185e^-4	0.228	UPSTREAM Xrp1 INTRON Xrp1	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	3839124	3R_3839124_INS [dm3] 3R_8013402_INS [dm6]	A	AA	1.186e^-4	0.228	UPSTREAM Pbp95 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_Ubx
2L	15145274	2L_15145274_INS [dm3] 2L_15145274_INS [dm6]	A	ATGAAACAGATGGAAA...	1.188e^-4	0.228	INTERGENIC
X	3939190	X_3939190_INS [dm3] X_4045157_INS [dm6]	C	CA	1.189e^-4	0.228	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	595478	3R_595478_SNP [dm3] 3R_4769756_SNP [dm6]	C	T	1.190e^-4	0.228	UPSTREAM CG44098 INTRON atms & 1 other
3R	9066820	3R_9066820_INS [dm3] 3R_13241098_INS [dm6]	A	AA	1.191e^-4	0.228	INTRON Ace
3R	22532760	3R_22532760_SNP [dm3] 3R_26707038_SNP [dm6]	C	G	1.192e^-4	0.228	INTRON amon
3L	14386125	3L_14386125_SNP [dm3] 3L_14393025_SNP [dm6]	G	T	1.196e^-4	0.228	INTERGENIC
3L	7524690	3L_7524690_SNP [dm3] 3L_7531590_SNP [dm6]	C	T	1.196e^-4	0.228	UPSTREAM lqf INTRON lqf
3R	14512361	3R_14512361_SNP [dm3] 3R_18686639_SNP [dm6]	A	G	1.197e^-4	0.228	UTR_3_PRIME CG7708 DOWNSTREAM Muc91C
2R	12904402	2R_12904402_INS [dm3] 2R_17016897_INS [dm6]	C	CT	1.198e^-4	0.228	UTR_3_PRIME CG8963
3R	15885852	3R_15885852_SNP [dm3] 3R_20060130_SNP [dm6]	T	C	1.199e^-4	0.228	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
3L	8626033	3L_8626033_SNP [dm3] 3L_8632933_SNP [dm6]	T	C	1.201e^-4	0.228	SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site mE1_TFBS_sens
3R	23872137	3R_23872137_SNP [dm3] 3R_28046415_SNP [dm6]	G	A	1.202e^-4	0.228	INTRON CG34362
X	12395069	X_12395069_SNP [dm3] X_12501036_SNP [dm6]	C	T	1.203e^-4	0.228	INTRON CG2556
3R	11559486	3R_11559486_SNP [dm3] 3R_15733764_SNP [dm6]	C	A	1.204e^-4	0.228	INTERGENIC
3R	15342736	3R_15342736_SNP [dm3] 3R_19517014_SNP [dm6]	T	C	1.205e^-4	0.228	INTRON Dys
3R	22532758	3R_22532758_SNP [dm3] 3R_26707036_SNP [dm6]	A	T	1.205e^-4	0.228	INTRON amon
X	5945935	X_5945935_INS [dm3] X_6051902_INS [dm6]	A	AA	1.208e^-4	0.228	INTRON CG5921
3L	23812944	3L_23812944_DEL [dm3] 3L_23819844_DEL [dm6]	CAACATTTA	C	1.209e^-4	0.228	INTERGENIC	transposable element FlyBase
3R	21185820	3R_21185820_MNP [dm3] 3R_25360098_MNP [dm6]	GAA	TGT	1.210e^-4	0.228	DOWNSTREAM CG11913 INTRON Fur1
3R	14662628	3R_14662628_SNP [dm3] 3R_18836906_SNP [dm6]	A	T	1.211e^-4	0.228	INTRON CG18208
2R	12461733	2R_12461733_INS [dm3] 2R_16574228_INS [dm6]	A	AG	1.212e^-4	0.228	DOWNSTREAM CG8317 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3R	15891264	3R_15891264_SNP [dm3] 3R_20065542_SNP [dm6]	G	A	1.212e^-4	0.228	INTERGENIC
X	6322517	X_6322517_DEL [dm3] X_6428484_DEL [dm6]	GGGTGTGTGAA...	G	1.212e^-4	0.228	INTRON CG42340
3R	10353586	3R_10353586_SNP [dm3] 3R_14527864_SNP [dm6]	T	G	1.215e^-4	0.228	INTRON Pde6
2L	13753184	2L_13753184_DEL [dm3] 2L_13753184_DEL [dm6]	GAGG	G	1.215e^-4	0.228	INTRON CR44846 & 1 other
2L	10814325	2L_10814325_SNP [dm3] 2L_10814325_SNP [dm6]	T	C	1.216e^-4	0.228	INTRON Nos
3L	14385964	3L_14385964_SNP [dm3] 3L_14392864_SNP [dm6]	G	T	1.216e^-4	0.228	INTERGENIC
3R	15759532	3R_15759532_SNP [dm3] 3R_19933810_SNP [dm6]	A	G	1.217e^-4	0.228	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14594757	3R_14594757_SNP [dm3] 3R_18769035_SNP [dm6]	T	C	1.218e^-4	0.228	SYNONYMOUS_CODING CG7720
3R	21521190	3R_21521190_SNP [dm3] 3R_25695468_SNP [dm6]	C	A	1.219e^-4	0.228	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

pc_SegregVariants_3R phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results