DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.479e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	<2e-16
In_3R_K	<2e-16
In_3R_Mo	<2e-16

Kruskal-Wallis test

Covariate	χ²	p-value
In_3R_P	15.7696	0.0004
In_3R_K	28.7381	5.7492e-07
In_3R_Mo	12.0421	0.0024

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3333 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	9226136	3R_9226136_DEL [dm3] 3R_13400414_DEL [dm6]	TTAGTTAT	T	1.228e^-6	0.457	INTRON CG9796
3R	17172271	3R_17172271_SNP [dm3] 3R_21346549_SNP [dm6]	G	T	1.511e^-6	0.457	INTRON CG16791	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18064714	X_18064714_DEL [dm3] X_18170681_DEL [dm6]	AC	A	1.542e^-6	0.457	UTR_3_PRIME Frq1
2R	14285872	2R_14285872_INS [dm3] 2R_18398367_INS [dm6]	A	ACTA	2.120e^-6	0.457	UPSTREAM GstE1 & 1 other INTRON GstE10
3R	25978234	3R_25978234_SNP [dm3] 3R_30152512_SNP [dm6]	G	A	2.484e^-6	0.457	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18065671	X_18065671_SNP [dm3] X_18171638_SNP [dm6]	C	T	2.900e^-6	0.457	UTR_3_PRIME Frq1
2L	10705607	2L_10705607_SNP [dm3] 2L_10705607_SNP [dm6]	C	T	2.974e^-6	0.457	DOWNSTREAM CG6415 INTRON Lip2
2L	10705646	2L_10705646_SNP [dm3] 2L_10705646_SNP [dm6]	C	A	3.694e^-6	0.457	DOWNSTREAM CG6415 INTRON Lip2
3L	10503033	3L_10503033_SNP [dm3] 3L_10509933_SNP [dm6]	G	A	3.969e^-6	0.457	INTRON A2bp1
2L	9396551	2L_9396551_SNP [dm3] 2L_9396551_SNP [dm6]	G	A	4.190e^-6	0.457	DOWNSTREAM CG4438 INTRON Shawl
2L	4209784	2L_4209784_DEL [dm3] 2L_4209784_DEL [dm6]	CC	C	4.363e^-6	0.457	INTRON ft	TF binding site mE1_TFBS_inv
2L	16447926	2L_16447926_SNP [dm3] 2L_16447926_SNP [dm6]	G	A	4.390e^-6	0.457	INTRON CG5888 & 1 other	TF binding site mE1_TFBS_Trl
3R	5145301	3R_5145301_SNP [dm3] 3R_9319579_SNP [dm6]	T	G	4.470e^-6	0.457	INTRON CG8861
3L	5310368	3L_5310368_SNP [dm3] 3L_5317268_SNP [dm6]	A	G	4.660e^-6	0.457	UPSTREAM CR45741 INTERGENIC
2L	10705613	2L_10705613_SNP [dm3] 2L_10705613_SNP [dm6]	A	G	4.812e^-6	0.457	DOWNSTREAM CG6415 INTRON Lip2
3R	18449810	3R_18449810_SNP [dm3] 3R_22624088_SNP [dm6]	T	C	4.897e^-6	0.457	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	9588278	2L_9588278_SNP [dm3] 2L_9588278_SNP [dm6]	C	A	5.004e^-6	0.457	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17579947	3L_17579947_SNP [dm3] 3L_17586847_SNP [dm6]	T	G	5.648e^-6	0.457	INTRON Eip74EF
3L	17764931	3L_17764931_SNP [dm3] 3L_17771831_SNP [dm6]	A	G	5.688e^-6	0.457	INTERGENIC
2L	4207422	2L_4207422_SNP [dm3] 2L_4207422_SNP [dm6]	A	G	5.696e^-6	0.457	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10705624	2L_10705624_SNP [dm3] 2L_10705624_SNP [dm6]	C	T	5.735e^-6	0.457	DOWNSTREAM CG6415 INTRON Lip2
2L	4208686	2L_4208686_SNP [dm3] 2L_4208686_SNP [dm6]	G	T	5.955e^-6	0.457	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26637072	3R_26637072_SNP [dm3] 3R_30811350_SNP [dm6]	G	A	6.124e^-6	0.457	INTRON cindr
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	6.699e^-6	0.457	INTRON aret
3R	26637079	3R_26637079_SNP [dm3] 3R_30811357_SNP [dm6]	G	C	6.783e^-6	0.457	INTRON cindr
2R	10605253	2R_10605253_SNP [dm3] 2R_14717748_SNP [dm6]	C	A	6.881e^-6	0.457	INTERGENIC
3L	17026609	3L_17026609_SNP [dm3] 3L_17033509_SNP [dm6]	T	C	6.993e^-6	0.457	UPSTREAM CR45756 EXON CR43250	TF binding site BDTNP1_TFBS_dl
X	10306399	X_10306399_DEL [dm3] X_10412366_DEL [dm6]	TT	T	7.660e^-6	0.457	UTR_3_PRIME CG32683
2R	14098751	2R_14098751_INS [dm3] 2R_18211246_INS [dm6]	G	GG	7.718e^-6	0.457	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16312668	3R_16312668_SNP [dm3] 3R_20486946_SNP [dm6]	G	T	7.907e^-6	0.457	UPSTREAM CR44401 INTERGENIC
3R	9226284	3R_9226284_SNP [dm3] 3R_13400562_SNP [dm6]	G	C	7.910e^-6	0.457	INTRON CG9796
3R	26539873	3R_26539873_SNP [dm3] 3R_30714151_SNP [dm6]	A	G	8.135e^-6	0.457	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13734487	3L_13734487_SNP [dm3] 3L_13741387_SNP [dm6]	C	A	8.514e^-6	0.457	INTRON bru-3
3L	19380842	3L_19380842_SNP [dm3] 3L_19387742_SNP [dm6]	C	A	8.975e^-6	0.457	NON_SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206
3L	17580000	3L_17580000_SNP [dm3] 3L_17586900_SNP [dm6]	T	A	9.417e^-6	0.457	INTRON Eip74EF
2L	12296927	2L_12296927_SNP [dm3] 2L_12296927_SNP [dm6]	A	G	9.455e^-6	0.457	INTRON aret
3L	17580001	3L_17580001_SNP [dm3] 3L_17586901_SNP [dm6]	T	A	9.532e^-6	0.457	INTRON Eip74EF
3R	18531080	3R_18531080_SNP [dm3] 3R_22705358_SNP [dm6]	C	A	9.688e^-6	0.457	INTRON CG13842
3R	18512253	3R_18512253_SNP [dm3] 3R_22686531_SNP [dm6]	T	C	9.735e^-6	0.457	UPSTREAM CG17625 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	10503194	3L_10503194_SNP [dm3] 3L_10510094_SNP [dm6]	G	A	9.745e^-6	0.457	INTRON A2bp1
3R	24486343	3R_24486343_SNP [dm3] 3R_28660621_SNP [dm6]	G	T	1.108e^-5	0.467	INTERGENIC
2R	13857300	2R_13857300_SNP [dm3] 2R_17969795_SNP [dm6]	G	A	1.125e^-5	0.467	INTERGENIC
3R	18526806	3R_18526806_SNP [dm3] 3R_22701084_SNP [dm6]	A	G	1.135e^-5	0.467	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
2L	11080476	2L_11080476_SNP [dm3] 2L_11080476_SNP [dm6]	A	G	1.160e^-5	0.467	INTRON AstC
3R	13508769	3R_13508769_SNP [dm3] 3R_17683047_SNP [dm6]	T	C	1.163e^-5	0.467	SYNONYMOUS_CODING CG7655 UPSTREAM alt DOWNSTREAM CG31251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	9743756	3R_9743756_SNP [dm3] 3R_13918034_SNP [dm6]	G	A	1.169e^-5	0.467	INTERGENIC
3R	18449737	3R_18449737_SNP [dm3] 3R_22624015_SNP [dm6]	A	T	1.189e^-5	0.467	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	17579990	3L_17579990_MNP [dm3] 3L_17586890_MNP [dm6]	AAA	TGC	1.194e^-5	0.467	INTRON Eip74EF
3L	13739552	3L_13739552_SNP [dm3] 3L_13746452_SNP [dm6]	T	C	1.226e^-5	0.469	INTRON bru-3
2L	10705633	2L_10705633_SNP [dm3] 2L_10705633_SNP [dm6]	T	C	1.272e^-5	0.472	DOWNSTREAM CG6415 INTRON Lip2
2R	16043078	2R_16043078_SNP [dm3] 2R_20155573_SNP [dm6]	G	A	1.318e^-5	0.472	INTERGENIC
3R	7876398	3R_7876398_SNP [dm3] 3R_12050676_SNP [dm6]	G	A	1.370e^-5	0.472	INTERGENIC
3R	16766433	3R_16766433_SNP [dm3] 3R_20940711_SNP [dm6]	T	A	1.398e^-5	0.472	INTRON CG31191
2R	14285319	2R_14285319_SNP [dm3] 2R_18397814_SNP [dm6]	G	A	1.430e^-5	0.472	UPSTREAM GstE1 & 1 other INTRON GstE10
3R	18449823	3R_18449823_SNP [dm3] 3R_22624101_SNP [dm6]	A	G	1.432e^-5	0.472	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	10503136	3L_10503136_SNP [dm3] 3L_10510036_SNP [dm6]	C	A	1.438e^-5	0.472	INTRON A2bp1
3R	5144251	3R_5144251_SNP [dm3] 3R_9318529_SNP [dm6]	G	A	1.472e^-5	0.472	INTRON CG8861
X	18065437	X_18065437_SNP [dm3] X_18171404_SNP [dm6]	C	T	1.485e^-5	0.472	UTR_3_PRIME Frq1
2R	19484911	2R_19484911_SNP [dm3] 2R_23597388_SNP [dm6]	T	C	1.514e^-5	0.472	SYNONYMOUS_CODING apt
3R	9226183	3R_9226183_SNP [dm3] 3R_13400461_SNP [dm6]	T	A	1.548e^-5	0.472	INTRON CG9796
3L	5642397	3L_5642397_SNP [dm3] 3L_5649297_SNP [dm6]	T	A	1.558e^-5	0.472	UTR_3_PRIME Blimp-1 DOWNSTREAM Blimp-1
3L	12298375	3L_12298375_SNP [dm3] 3L_12305275_SNP [dm6]	A	G	1.561e^-5	0.472	INTERGENIC
3R	9226756	3R_9226756_SNP [dm3] 3R_13401034_SNP [dm6]	C	A	1.610e^-5	0.472	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11171980	3R_11171980_DEL [dm3] 3R_15346258_DEL [dm6]	GCT	G	1.628e^-5	0.472	UTR_5_PRIME CG31301 UPSTREAM Surf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2578804	3L_2578804_SNP [dm3] 3L_2578804_SNP [dm6]	A	G	1.665e^-5	0.472	INTRON msn	TF binding site BDTNP1_TFBS_twi
3L	10503135	3L_10503135_SNP [dm3] 3L_10510035_SNP [dm6]	T	C	1.671e^-5	0.472	INTRON A2bp1
3R	9890857	3R_9890857_SNP [dm3] 3R_14065135_SNP [dm6]	A	G	1.713e^-5	0.472	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18376258	X_18376258_INS [dm3] X_18482225_INS [dm6]	A	ACACA	1.772e^-5	0.472	INTRON Hayan	TF binding site mE1_TFBS_inv
2L	17896790	2L_17896790_SNP [dm3] 2L_17896790_SNP [dm6]	A	T	1.817e^-5	0.472	INTERGENIC
2L	13264333	2L_13264333_SNP [dm3] 2L_13264333_SNP [dm6]	A	G	1.829e^-5	0.472	DOWNSTREAM CG31848 INTRON CG44085
3R	27431292	3R_27431292_SNP [dm3] 3R_31605570_SNP [dm6]	G	T	1.856e^-5	0.472	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	19285277	2R_19285277_SNP [dm3] 2R_23397754_SNP [dm6]	G	A	1.907e^-5	0.472	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
3L	13735365	3L_13735365_SNP [dm3] 3L_13742265_SNP [dm6]	A	G	1.965e^-5	0.472	INTRON bru-3
3R	23947382	3R_23947382_DEL [dm3] 3R_28121660_DEL [dm6]	AA	A	1.976e^-5	0.472	INTERGENIC
2L	16552621	2L_16552621_SNP [dm3] 2L_16552621_SNP [dm6]	G	T	1.976e^-5	0.472	INTRON CG42389
2R	9215028	2R_9215028_SNP [dm3] 2R_13327523_SNP [dm6]	A	G	2.014e^-5	0.472	INTERGENIC
3L	10503120	3L_10503120_SNP [dm3] 3L_10510020_SNP [dm6]	A	G	2.037e^-5	0.472	INTRON A2bp1
X	11517464	X_11517464_SNP [dm3] X_11623431_SNP [dm6]	G	A	2.096e^-5	0.472	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18065438	X_18065438_SNP [dm3] X_18171405_SNP [dm6]	C	T	2.110e^-5	0.472	UTR_3_PRIME Frq1
3R	10699979	3R_10699979_SNP [dm3] 3R_14874257_SNP [dm6]	T	G	2.110e^-5	0.472	UPSTREAM btsz INTRON btsz
3R	10420289	3R_10420289_SNP [dm3] 3R_14594567_SNP [dm6]	A	T	2.115e^-5	0.472	INTRON stumps	regulatory region REDfly_CRMs
3R	16766421	3R_16766421_SNP [dm3] 3R_20940699_SNP [dm6]	T	A	2.138e^-5	0.472	INTRON CG31191
2L	12297009	2L_12297009_SNP [dm3] 2L_12297009_SNP [dm6]	A	C	2.161e^-5	0.472	INTRON aret
3R	9226941	3R_9226941_SNP [dm3] 3R_13401219_SNP [dm6]	G	T	2.178e^-5	0.472	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4707265	2L_4707265_SNP [dm3] 2L_4707265_SNP [dm6]	G	T	2.179e^-5	0.472	INTRON CG34351
3L	10503325	3L_10503325_SNP [dm3] 3L_10510225_SNP [dm6]	T	C	2.186e^-5	0.472	INTRON A2bp1
3L	10503024	3L_10503024_INS [dm3] 3L_10509924_INS [dm6]	G	GCATTT	2.190e^-5	0.472	INTRON A2bp1
3L	4318147	3L_4318147_SNP [dm3] 3L_4318147_SNP [dm6]	G	T	2.229e^-5	0.475	NON_SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
3R	11682316	3R_11682316_SNP [dm3] 3R_15856594_SNP [dm6]	A	T	2.257e^-5	0.476	INTRON Hmt-1	TF binding site mE1_TFBS_sens
2L	1552225	2L_1552225_SNP [dm3] 2L_1552225_SNP [dm6]	A	G	2.430e^-5	0.479	INTERGENIC
2L	21793557	2L_21793557_SNP [dm3] 2L_21793557_SNP [dm6]	G	T	2.435e^-5	0.479	INTRON CG31612	TF binding site BDTNP1_TFBS_z
3L	6379351	3L_6379351_SNP [dm3] 3L_6386251_SNP [dm6]	A	C	2.456e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14105058	2L_14105058_MNP [dm3] 2L_14105058_MNP [dm6]	TCA	GTC	2.494e^-5	0.479	INTRON CG16879	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14285336	2R_14285336_SNP [dm3] 2R_18397831_SNP [dm6]	T	C	2.506e^-5	0.479	UPSTREAM GstE1 & 1 other INTRON GstE10
2L	9412519	2L_9412519_SNP [dm3] 2L_9412519_SNP [dm6]	G	A	2.520e^-5	0.479	INTRON Shawl
2R	18603310	2R_18603310_SNP [dm3] 2R_22715805_SNP [dm6]	T	C	2.544e^-5	0.479	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
2R	14285859	2R_14285859_SNP [dm3] 2R_18398354_SNP [dm6]	C	T	2.568e^-5	0.479	UPSTREAM GstE1 & 1 other INTRON GstE10
2R	14285889	2R_14285889_SNP [dm3] 2R_18398384_SNP [dm6]	A	G	2.579e^-5	0.479	UPSTREAM GstE1 & 1 other INTRON GstE10
2R	20173697	2R_20173697_SNP [dm3] 2R_24286174_SNP [dm6]	C	T	2.719e^-5	0.479	INTRON nvy	TF binding site mE1_TFBS_chinmo
2L	17489659	2L_17489659_SNP [dm3] 2L_17489659_SNP [dm6]	C	A	2.724e^-5	0.479	INTRON qua	TF binding site mE1_TFBS_cad
2L	16526396	2L_16526396_SNP [dm3] 2L_16526396_SNP [dm6]	A	G	2.775e^-5	0.479	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	11517153	X_11517153_DEL [dm3] X_11623120_DEL [dm6]	CAT	C	2.780e^-5	0.479	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9839544	2L_9839544_SNP [dm3] 2L_9839544_SNP [dm6]	T	G	2.784e^-5	0.479	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
3L	9749779	3L_9749779_SNP [dm3] 3L_9756679_SNP [dm6]	T	C	2.790e^-5	0.479	INTRON CG42268
2R	14285327	2R_14285327_SNP [dm3] 2R_18397822_SNP [dm6]	A	G	2.793e^-5	0.479	UPSTREAM GstE1 & 1 other INTRON GstE10
3L	10503050	3L_10503050_SNP [dm3] 3L_10509950_SNP [dm6]	T	C	2.835e^-5	0.479	INTRON A2bp1
3L	5955717	3L_5955717_SNP [dm3] 3L_5962617_SNP [dm6]	G	T	2.877e^-5	0.479	INTERGENIC
3R	22354597	3R_22354597_DEL [dm3] 3R_26528875_DEL [dm6]	GG	G	2.885e^-5	0.479	INTRON plum
3L	13727694	3L_13727694_SNP [dm3] 3L_13734594_SNP [dm6]	C	G	2.886e^-5	0.479	INTRON bru-3
3L	12310472	3L_12310472_SNP [dm3] 3L_12317372_SNP [dm6]	C	G	2.917e^-5	0.479	INTERGENIC
X	18063480	X_18063480_SNP [dm3] X_18169447_SNP [dm6]	T	C	2.959e^-5	0.479	INTRON Frq1
3R	10420226	3R_10420226_SNP [dm3] 3R_14594504_SNP [dm6]	T	C	2.982e^-5	0.479	INTRON stumps	regulatory region REDfly_CRMs
3R	17327054	3R_17327054_SNP [dm3] 3R_21501332_SNP [dm6]	C	T	3.023e^-5	0.479	INTRON C15
3R	11182781	3R_11182781_SNP [dm3] 3R_15357059_SNP [dm6]	C	T	3.058e^-5	0.479	UPSTREAM CG5044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10605263	2R_10605263_SNP [dm3] 2R_14717758_SNP [dm6]	T	A	3.074e^-5	0.479	INTERGENIC
3L	17595624	3L_17595624_SNP [dm3] 3L_17602524_SNP [dm6]	T	C	3.093e^-5	0.479	INTRON Eip74EF
X	9017621	X_9017621_DEL [dm3] X_9123588_DEL [dm6]	AGT	A	3.093e^-5	0.479	UTR_3_PRIME fend
3R	13508783	3R_13508783_SNP [dm3] 3R_17683061_SNP [dm6]	A	G	3.104e^-5	0.479	SYNONYMOUS_CODING CG7655 UPSTREAM alt DOWNSTREAM CG31251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1593684	2R_1593684_SNP [dm3] 2R_5706179_SNP [dm6]	C	T	3.137e^-5	0.479	DOWNSTREAM ap & 1 other INTERGENIC
3R	10420221	3R_10420221_SNP [dm3] 3R_14594499_SNP [dm6]	A	G	3.169e^-5	0.479	INTRON stumps	regulatory region REDfly_CRMs
2R	20173752	2R_20173752_SNP [dm3] 2R_24286229_SNP [dm6]	G	A	3.175e^-5	0.479	INTRON nvy	TF binding site mE1_TFBS_chinmo
X	12322534	X_12322534_SNP [dm3] X_12428501_SNP [dm6]	G	A	3.235e^-5	0.479	INTERGENIC
3L	10503022	3L_10503022_SNP [dm3] 3L_10509922_SNP [dm6]	A	T	3.244e^-5	0.479	INTRON A2bp1
3R	9325710	3R_9325710_DEL [dm3] 3R_13499988_DEL [dm6]	TG	T	3.253e^-5	0.479	INTERGENIC
3L	23053514	3L_23053514_SNP [dm3] 3L_23060414_SNP [dm6]	T	C	3.287e^-5	0.479	INTERGENIC	transposable element FlyBase
2L	4209905	2L_4209905_SNP [dm3] 2L_4209905_SNP [dm6]	A	G	3.356e^-5	0.479	INTRON ft	TF binding site mE1_TFBS_inv
3R	18806206	3R_18806206_SNP [dm3] 3R_22980484_SNP [dm6]	A	T	3.383e^-5	0.479	DOWNSTREAM Nha2 INTERGENIC
3R	18806212	3R_18806212_SNP [dm3] 3R_22980490_SNP [dm6]	A	T	3.383e^-5	0.479	DOWNSTREAM Nha2 INTERGENIC
3R	21500469	3R_21500469_SNP [dm3] 3R_25674747_SNP [dm6]	G	A	3.432e^-5	0.479	INTRON Lgr3
X	12264377	X_12264377_SNP [dm3] X_12370344_SNP [dm6]	C	T	3.434e^-5	0.479	INTERGENIC
3L	8696558	3L_8696558_DEL [dm3] 3L_8703458_DEL [dm6]	TTT	T	3.449e^-5	0.479	INTERGENIC
X	12264379	X_12264379_SNP [dm3] X_12370346_SNP [dm6]	A	T	3.457e^-5	0.479	INTERGENIC
2R	14285289	2R_14285289_SNP [dm3] 2R_18397784_SNP [dm6]	G	T	3.461e^-5	0.479	UTR_5_PRIME GstE10 UPSTREAM GstE1 & 1 other
2L	11942111	2L_11942111_DEL [dm3] 2L_11942111_DEL [dm6]	TT	T	3.498e^-5	0.479	INTERGENIC	regulatory region REDfly_CRMs
3R	25344157	3R_25344157_SNP [dm3] 3R_29518435_SNP [dm6]	T	C	3.516e^-5	0.479	INTERGENIC
3L	8383133	3L_8383133_SNP [dm3] 3L_8390033_SNP [dm6]	C	T	3.546e^-5	0.479	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5106239	2L_5106239_SNP [dm3] 2L_5106239_SNP [dm6]	T	G	3.553e^-5	0.479	INTRON Msp300
X	18063781	X_18063781_SNP [dm3] X_18169748_SNP [dm6]	G	A	3.561e^-5	0.479	SYNONYMOUS_CODING Frq1
3R	18806205	3R_18806205_SNP [dm3] 3R_22980483_SNP [dm6]	G	T	3.626e^-5	0.479	DOWNSTREAM Nha2 INTERGENIC
3R	9197156	3R_9197156_SNP [dm3] 3R_13371434_SNP [dm6]	A	G	3.672e^-5	0.479	SYNONYMOUS_CODING Lip3
2R	1127765	2R_1127765_DEL [dm3] 2R_5240260_DEL [dm6]	TGTTTCGATCTAATGGGGAG...	T	3.702e^-5	0.479	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl
3L	13734726	3L_13734726_SNP [dm3] 3L_13741626_SNP [dm6]	G	A	3.721e^-5	0.479	INTRON bru-3
X	18063420	X_18063420_INS [dm3] X_18169387_INS [dm6]	T	TGTGT	3.734e^-5	0.479	INTRON Frq1
3R	24200226	3R_24200226_SNP [dm3] 3R_28374504_SNP [dm6]	T	A	3.778e^-5	0.479	INTERGENIC
3R	7088155	3R_7088155_SNP [dm3] 3R_11262433_SNP [dm6]	C	T	3.915e^-5	0.479	INTERGENIC
3R	10552813	3R_10552813_SNP [dm3] 3R_14727091_SNP [dm6]	T	G	3.942e^-5	0.479	INTRON CG7530
3R	9910425	3R_9910425_SNP [dm3] 3R_14084703_SNP [dm6]	C	A	3.949e^-5	0.479	INTRON foxo
3R	6638475	3R_6638475_SNP [dm3] 3R_10812753_SNP [dm6]	T	A	3.960e^-5	0.479	DOWNSTREAM CG14693 INTRON CG14693
3L	1575770	3L_1575770_INS [dm3] 3L_1575770_INS [dm6]	A	AGAA	3.973e^-5	0.479	UTR_3_PRIME CG12004 UPSTREAM CG13917 DOWNSTREAM CG12004	TF binding site BDTNP1_TFBS_dl
3R	9540164	3R_9540164_INS [dm3] 3R_13714442_INS [dm6]	G	GG	3.978e^-5	0.479	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	20605126	3L_20605126_SNP [dm3] 3L_20612026_SNP [dm6]	T	C	3.999e^-5	0.479	INTRON knrl	regulatory region REDfly_CRMs
3R	10420212	3R_10420212_SNP [dm3] 3R_14594490_SNP [dm6]	A	T	4.013e^-5	0.479	INTRON stumps	regulatory region REDfly_CRMs
3R	20608317	3R_20608317_SNP [dm3] 3R_24782595_SNP [dm6]	A	T	4.067e^-5	0.479	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2L	9405364	2L_9405364_SNP [dm3] 2L_9405364_SNP [dm6]	G	A	4.083e^-5	0.479	INTRON Shawl
3L	10262239	3L_10262239_SNP [dm3] 3L_10269139_SNP [dm6]	C	A	4.134e^-5	0.479	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2L	1102967	2L_1102967_SNP [dm3] 2L_1102967_SNP [dm6]	G	A	4.139e^-5	0.479	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
2R	20173695	2R_20173695_SNP [dm3] 2R_24286172_SNP [dm6]	C	G	4.143e^-5	0.479	INTRON nvy	TF binding site mE1_TFBS_chinmo
X	3939842	X_3939842_SNP [dm3] X_4045809_SNP [dm6]	G	A	4.151e^-5	0.479	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16306196	3R_16306196_SNP [dm3] 3R_20480474_SNP [dm6]	A	G	4.172e^-5	0.479	INTRON Gfrl
X	14942611	X_14942611_SNP [dm3] X_15048578_SNP [dm6]	G	A	4.194e^-5	0.479	UPSTREAM CG5541 INTRON hiw & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv transposable element FlyBase
3R	25268104	3R_25268104_SNP [dm3] 3R_29442382_SNP [dm6]	A	G	4.227e^-5	0.479	INTRON Ptp99A
X	11517403	X_11517403_SNP [dm3] X_11623370_SNP [dm6]	A	C	4.232e^-5	0.479	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13585617	3R_13585617_DEL [dm3] 3R_17759895_DEL [dm6]	ACT	A	4.251e^-5	0.479	UPSTREAM TyrR INTRON TyrR
3R	21630983	3R_21630983_SNP [dm3] 3R_25805261_SNP [dm6]	T	G	4.283e^-5	0.479	INTERGENIC
3L	5252865	3L_5252865_SNP [dm3] 3L_5259765_SNP [dm6]	T	C	4.326e^-5	0.479	INTRON shep
2L	16335688	2L_16335688_SNP [dm3] 2L_16335688_SNP [dm6]	A	G	4.352e^-5	0.479	NON_SYNONYMOUS_CODING CG31817
3R	12705053	3R_12705053_SNP [dm3] 3R_16879331_SNP [dm6]	G	A	4.357e^-5	0.479	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6561854	2R_6561854_SNP [dm3] 2R_10674349_SNP [dm6]	A	C	4.409e^-5	0.479	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16447941	2L_16447941_SNP [dm3] 2L_16447941_SNP [dm6]	G	A	4.432e^-5	0.479	INTRON CG5888 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14183008	3L_14183008_SNP [dm3] 3L_14189908_SNP [dm6]	A	C	4.449e^-5	0.479	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25155534	3R_25155534_SNP [dm3] 3R_29329812_SNP [dm6]	C	G	4.474e^-5	0.479	INTERGENIC
3R	14526267	3R_14526267_SNP [dm3] 3R_18700545_SNP [dm6]	C	T	4.503e^-5	0.479	INTERGENIC
3L	9164326	3L_9164326_SNP [dm3] 3L_9171226_SNP [dm6]	G	A	4.507e^-5	0.479	INTRON Rdl
2L	16335374	2L_16335374_SNP [dm3] 2L_16335374_SNP [dm6]	C	T	4.516e^-5	0.479	NON_SYNONYMOUS_CODING CG31817
3R	7823567	3R_7823567_INS [dm3] 3R_11997845_INS [dm6]	T	TG	4.561e^-5	0.479	INTRON Tk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1349829	2R_1349829_SNP [dm3] 2R_5462324_SNP [dm6]	G	C	4.562e^-5	0.479	INTERGENIC	transposable element FlyBase
3R	9012796	3R_9012796_SNP [dm3] 3R_13187074_SNP [dm6]	C	G	4.574e^-5	0.479	UPSTREAM CG8508 INTERGENIC
3R	7378244	3R_7378244_SNP [dm3] 3R_11552522_SNP [dm6]	T	A	4.685e^-5	0.479	INTERGENIC
2L	17896477	2L_17896477_SNP [dm3] 2L_17896477_SNP [dm6]	A	C	4.704e^-5	0.479	INTERGENIC
3L	16529226	3L_16529226_SNP [dm3] 3L_16536126_SNP [dm6]	G	C	4.737e^-5	0.479	INTRON CG43373
3R	10202499	3R_10202499_SNP [dm3] 3R_14376777_SNP [dm6]	T	G	4.779e^-5	0.479	EXON CR44943	TF binding site BDTNP1_TFBS_dl
3L	12310471	3L_12310471_SNP [dm3] 3L_12317371_SNP [dm6]	A	C	4.787e^-5	0.479	INTERGENIC
3L	5530563	3L_5530563_SNP [dm3] 3L_5537463_SNP [dm6]	G	A	4.793e^-5	0.479	DOWNSTREAM CG10625 INTERGENIC
3L	18050950	3L_18050950_DEL [dm3] 3L_18057850_DEL [dm6]	CACTAAGC	T	4.802e^-5	0.479	INTRON Eip75B
2R	17024501	2R_17024501_SNP [dm3] 2R_21136996_SNP [dm6]	T	C	4.813e^-5	0.479	INTRON Magi	TF binding site mE1_TFBS_sens
3R	17252636	3R_17252636_SNP [dm3] 3R_21426914_SNP [dm6]	T	G	4.850e^-5	0.479	UTR_3_PRIME lbl INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26415254	3R_26415254_SNP [dm3] 3R_30589532_SNP [dm6]	C	T	4.892e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16358072	2L_16358072_SNP [dm3] 2L_16358072_SNP [dm6]	A	T	4.912e^-5	0.479	INTERGENIC
3R	12339422	3R_12339422_SNP [dm3] 3R_16513700_SNP [dm6]	A	G	4.933e^-5	0.479	NON_SYNONYMOUS_CODING CG42342	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4707384	2L_4707384_SNP [dm3] 2L_4707384_SNP [dm6]	C	T	4.958e^-5	0.479	INTRON CG34351
3R	25315206	3R_25315206_SNP [dm3] 3R_29489484_SNP [dm6]	A	C	4.993e^-5	0.479	UTR_5_PRIME CG2006 UPSTREAM CG2321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10503036	3L_10503036_SNP [dm3] 3L_10509936_SNP [dm6]	T	A	5.012e^-5	0.479	INTRON A2bp1
X	18064370	X_18064370_SNP [dm3] X_18170337_SNP [dm6]	A	G	5.013e^-5	0.479	UTR_3_PRIME Frq1
3R	8741980	3R_8741980_SNP [dm3] 3R_12916258_SNP [dm6]	T	G	5.013e^-5	0.479	START_GAINED beat-Vb UTR_5_PRIME beat-Vb INTRON beat-Vb
3L	16731359	3L_16731359_SNP [dm3] 3L_16738259_SNP [dm6]	T	G	5.037e^-5	0.479	INTRON CG9701
3R	10411636	3R_10411636_INS [dm3] 3R_14585914_INS [dm6]	A	AA	5.083e^-5	0.479	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14183016	3L_14183016_SNP [dm3] 3L_14189916_SNP [dm6]	A	T	5.170e^-5	0.479	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14182974	3L_14182974_SNP [dm3] 3L_14189874_SNP [dm6]	A	G	5.188e^-5	0.479	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4669274	3L_4669274_SNP [dm3] 3L_4669274_SNP [dm6]	G	A	5.230e^-5	0.479	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26362354	3R_26362354_SNP [dm3] 3R_30536632_SNP [dm6]	G	A	5.245e^-5	0.479	INTRON tmod
3R	9197444	3R_9197444_SNP [dm3] 3R_13371722_SNP [dm6]	T	C	5.282e^-5	0.479	NON_SYNONYMOUS_CODING Lip3 UPSTREAM CG34309
3L	10666712	3L_10666712_SNP [dm3] 3L_10673612_SNP [dm6]	C	T	5.414e^-5	0.479	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17070153	2R_17070153_SNP [dm3] 2R_21182648_SNP [dm6]	T	C	5.457e^-5	0.479	UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25357177	3R_25357177_DEL [dm3] 3R_29531455_DEL [dm6]	ACAACAA	A	5.478e^-5	0.479	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9588166	2L_9588166_SNP [dm3] 2L_9588166_SNP [dm6]	A	G	5.505e^-5	0.479	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9588103	2L_9588103_SNP [dm3] 2L_9588103_SNP [dm6]	C	T	5.576e^-5	0.479	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4638360	3L_4638360_SNP [dm3] 3L_4638360_SNP [dm6]	G	C	5.592e^-5	0.479	INTRON axo
3R	7148040	3R_7148040_SNP [dm3] 3R_11322318_SNP [dm6]	C	T	5.596e^-5	0.479	INTERGENIC
X	16892363	X_16892363_SNP [dm3] X_16998330_SNP [dm6]	A	G	5.601e^-5	0.479	INTRON CG45002
3R	25157496	3R_25157496_SNP [dm3] 3R_29331774_SNP [dm6]	G	T	5.633e^-5	0.479	INTERGENIC
3R	26871503	3R_26871503_SNP [dm3] 3R_31045781_SNP [dm6]	C	T	5.642e^-5	0.479	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
3R	11682260	3R_11682260_SNP [dm3] 3R_15856538_SNP [dm6]	G	A	5.656e^-5	0.479	SYNONYMOUS_CODING Hmt-1	TF binding site mE1_TFBS_sens
2L	4707364	2L_4707364_SNP [dm3] 2L_4707364_SNP [dm6]	G	C	5.660e^-5	0.479	INTRON CG34351
3L	6379340	3L_6379340_SNP [dm3] 3L_6386240_SNP [dm6]	C	T	5.668e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9749384	3L_9749384_SNP [dm3] 3L_9756284_SNP [dm6]	G	A	5.715e^-5	0.479	INTRON CG42268
2R	6586656	2R_6586656_SNP [dm3] 2R_10699151_SNP [dm6]	G	C	5.718e^-5	0.479	INTRON stan
2L	9396702	2L_9396702_SNP [dm3] 2L_9396702_SNP [dm6]	C	T	5.760e^-5	0.479	DOWNSTREAM CG4438 INTRON Shawl
3R	24200228	3R_24200228_SNP [dm3] 3R_28374506_SNP [dm6]	A	T	5.787e^-5	0.479	INTERGENIC
3L	17612801	3L_17612801_SNP [dm3] 3L_17619701_SNP [dm6]	C	T	5.798e^-5	0.479	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	7823689	3R_7823689_SNP [dm3] 3R_11997967_SNP [dm6]	A	G	5.805e^-5	0.479	INTRON Tk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16433940	2L_16433940_SNP [dm3] 2L_16433940_SNP [dm6]	T	G	5.819e^-5	0.479	INTRON CG5888
3L	13916681	3L_13916681_DEL [dm3] 3L_13923581_DEL [dm6]	AA	A	5.977e^-5	0.479	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	23055674	3R_23055674_SNP [dm3] 3R_27229952_SNP [dm6]	T	C	5.984e^-5	0.479	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17352558	2R_17352558_SNP [dm3] 2R_21465053_SNP [dm6]	G	C	5.993e^-5	0.479	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	16829681	2R_16829681_INS [dm3] 2R_20942176_INS [dm6]	T	TT	6.003e^-5	0.479	INTERGENIC
3R	4766180	3R_4766180_SNP [dm3] 3R_8940458_SNP [dm6]	A	T	6.039e^-5	0.479	INTRON skap
3L	14186762	3L_14186762_SNP [dm3] 3L_14193662_SNP [dm6]	G	A	6.141e^-5	0.479	INTRON nuf	TF binding site BDTNP1_TFBS_twi
3R	10420235	3R_10420235_SNP [dm3] 3R_14594513_SNP [dm6]	A	C	6.167e^-5	0.479	INTRON stumps	regulatory region REDfly_CRMs
X	18063928	X_18063928_SNP [dm3] X_18169895_SNP [dm6]	C	T	6.199e^-5	0.479	INTRON Frq1
2L	1102905	2L_1102905_SNP [dm3] 2L_1102905_SNP [dm6]	C	A	6.299e^-5	0.479	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3R	6298557	3R_6298557_SNP [dm3] 3R_10472835_SNP [dm6]	C	T	6.300e^-5	0.479	INTERGENIC
2L	9752335	2L_9752335_SNP [dm3] 2L_9752335_SNP [dm6]	C	T	6.303e^-5	0.479	INTERGENIC
2R	3263958	2R_3263958_SNP [dm3] 2R_7376453_SNP [dm6]	A	T	6.327e^-5	0.479	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
X	8449016	X_8449016_DEL [dm3] X_8554983_DEL [dm6]	TT	T	6.329e^-5	0.479	UTR_3_PRIME Nrg DOWNSTREAM IntS4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3R	21439184	3R_21439184_INS [dm3] 3R_25613462_INS [dm6]	T	TGGAG	6.402e^-5	0.479	UPSTREAM CG5079 INTRON Npl4
3R	13412626	3R_13412626_SNP [dm3] 3R_17586904_SNP [dm6]	T	A	6.429e^-5	0.479	INTERGENIC
3R	9047364	3R_9047364_SNP [dm3] 3R_13221642_SNP [dm6]	G	T	6.485e^-5	0.479	INTERGENIC
2R	16829716	2R_16829716_SNP [dm3] 2R_20942211_SNP [dm6]	C	T	6.493e^-5	0.479	INTERGENIC
2R	1926870	2R_1926870_DEL [dm3] 2R_6039365_DEL [dm6]	TATGTCA	T	6.502e^-5	0.479	INTRON CG14591
3R	9388193	3R_9388193_DEL [dm3] 3R_13562471_DEL [dm6]	CGTTAA	C	6.533e^-5	0.479	INTERGENIC
3L	10783106	3L_10783106_INS [dm3] 3L_10790006_INS [dm6]	A	ACAAATTCAATTAAAAAAA...	6.556e^-5	0.479	DOWNSTREAM CR44545 INTERGENIC
3L	15686413	3L_15686413_SNP [dm3] 3L_15693313_SNP [dm6]	C	A	6.558e^-5	0.479	INTERGENIC	silencer mE1_HDAC_PRE
3L	1935972	3L_1935972_SNP [dm3] 3L_1935972_SNP [dm6]	A	G	6.563e^-5	0.479	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21491130	3R_21491130_SNP [dm3] 3R_25665408_SNP [dm6]	G	A	6.574e^-5	0.479	UTR_3_PRIME RASSF8 UPSTREAM Lgr3	TF binding site BDTNP1_TFBS_twi
2L	16335329	2L_16335329_SNP [dm3] 2L_16335329_SNP [dm6]	T	C	6.609e^-5	0.479	NON_SYNONYMOUS_CODING CG31817
3R	10188030	3R_10188030_INS [dm3] 3R_14362308_INS [dm6]	G	GAG	6.645e^-5	0.479	UPSTREAM CG31320 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19615253	2R_19615253_DEL [dm3] 2R_23727730_DEL [dm6]	ATTAA	A	6.709e^-5	0.479	INTRON Sesn	TF binding site mE1_TFBS_chinmo
X	18065370	X_18065370_SNP [dm3] X_18171337_SNP [dm6]	G	A	6.727e^-5	0.479	UTR_3_PRIME Frq1
2L	12297083	2L_12297083_SNP [dm3] 2L_12297083_SNP [dm6]	C	T	6.738e^-5	0.479	INTRON aret
2L	9588155	2L_9588155_SNP [dm3] 2L_9588155_SNP [dm6]	A	G	6.745e^-5	0.479	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18806139	3R_18806139_DEL [dm3] 3R_22980417_DEL [dm6]	TC	T	6.777e^-5	0.479	INTERGENIC
3R	26238173	3R_26238173_SNP [dm3] 3R_30412451_SNP [dm6]	T	C	6.779e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26415273	3R_26415273_SNP [dm3] 3R_30589551_SNP [dm6]	T	A	6.793e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	855520	2L_855520_SNP [dm3] 2L_855520_SNP [dm6]	A	G	6.806e^-5	0.479	UTR_5_PRIME CG13949 DOWNSTREAM kraken	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6561810	2R_6561810_SNP [dm3] 2R_10674305_SNP [dm6]	G	T	6.844e^-5	0.479	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11517150	X_11517150_SNP [dm3] X_11623117_SNP [dm6]	C	T	6.851e^-5	0.479	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16335815	2L_16335815_SNP [dm3] 2L_16335815_SNP [dm6]	C	G	6.853e^-5	0.479	NON_SYNONYMOUS_CODING CG31817
3R	9356206	3R_9356206_SNP [dm3] 3R_13530484_SNP [dm6]	G	T	6.854e^-5	0.479	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9357423	3R_9357423_SNP [dm3] 3R_13531701_SNP [dm6]	C	T	6.861e^-5	0.479	INTERGENIC
2L	584200	2L_584200_SNP [dm3] 2L_584200_SNP [dm6]	T	G	6.866e^-5	0.479	SYNONYMOUS_CODING Gsc
3R	25770433	3R_25770433_SNP [dm3] 3R_29944711_SNP [dm6]	C	T	6.886e^-5	0.479	NON_SYNONYMOUS_CODING CG15523
3R	18651474	3R_18651474_SNP [dm3] 3R_22825752_SNP [dm6]	A	T	6.896e^-5	0.479	EXON CR44350
3R	7882490	3R_7882490_SNP [dm3] 3R_12056768_SNP [dm6]	C	T	6.914e^-5	0.479	INTERGENIC
2L	9587189	2L_9587189_DEL [dm3] 2L_9587189_DEL [dm6]	AA	A	6.941e^-5	0.479	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	10969986	2L_10969986_SNP [dm3] 2L_10969986_SNP [dm6]	T	C	6.971e^-5	0.479	UPSTREAM YL-1 INTRON CG33129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	4911563	2L_4911563_SNP [dm3] 2L_4911563_SNP [dm6]	A	T	7.000e^-5	0.479	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26415257	3R_26415257_SNP [dm3] 3R_30589535_SNP [dm6]	T	G	7.033e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10503058	3L_10503058_SNP [dm3] 3L_10509958_SNP [dm6]	G	A	7.048e^-5	0.479	INTRON A2bp1
X	11517494	X_11517494_SNP [dm3] X_11623461_SNP [dm6]	C	G	7.051e^-5	0.479	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17610836	3L_17610836_SNP [dm3] 3L_17617736_SNP [dm6]	A	T	7.054e^-5	0.479	INTRON Eip74EF
3R	26238174	3R_26238174_SNP [dm3] 3R_30412452_SNP [dm6]	G	A	7.060e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12890164	3L_12890164_SNP [dm3] 3L_12897064_SNP [dm6]	T	A	7.074e^-5	0.479	INTERGENIC
X	18063961	X_18063961_SNP [dm3] X_18169928_SNP [dm6]	C	T	7.082e^-5	0.479	INTRON Frq1
3L	2578921	3L_2578921_DEL [dm3] 3L_2578921_DEL [dm6]	TC	T	7.120e^-5	0.479	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	19916347	3R_19916347_SNP [dm3] 3R_24090625_SNP [dm6]	C	G	7.127e^-5	0.479	INTRON 4EHP
3R	26418491	3R_26418491_SNP [dm3] 3R_30592769_SNP [dm6]	A	G	7.130e^-5	0.479	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16731323	3L_16731323_SNP [dm3] 3L_16738223_SNP [dm6]	A	G	7.174e^-5	0.479	INTRON CG9701	TF binding site mE1_TFBS_cad
2L	12296940	2L_12296940_SNP [dm3] 2L_12296940_SNP [dm6]	C	A	7.216e^-5	0.479	INTRON aret
2L	19868478	2L_19868478_DEL [dm3] 2L_19868478_DEL [dm6]	CCTGGTTTA	T	7.232e^-5	0.479	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	4614050	3L_4614050_SNP [dm3] 3L_4614050_SNP [dm6]	C	T	7.233e^-5	0.479	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	6379500	3L_6379500_SNP [dm3] 3L_6386400_SNP [dm6]	G	A	7.270e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9207066	2R_9207066_DEL [dm3] 2R_13319561_DEL [dm6]	TT	G	7.280e^-5	0.479	INTERGENIC
3L	12310459	3L_12310459_SNP [dm3] 3L_12317359_SNP [dm6]	G	A	7.316e^-5	0.479	INTERGENIC
3R	7882508	3R_7882508_SNP [dm3] 3R_12056786_SNP [dm6]	A	G	7.328e^-5	0.479	INTERGENIC
3R	7380614	3R_7380614_SNP [dm3] 3R_11554892_SNP [dm6]	T	A	7.332e^-5	0.479	DOWNSTREAM CG14708 INTERGENIC
3R	17289542	3R_17289542_SNP [dm3] 3R_21463820_SNP [dm6]	C	G	7.333e^-5	0.479	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	9607204	2R_9607204_SNP [dm3] 2R_13719699_SNP [dm6]	C	A	7.353e^-5	0.479	INTRON fas
3R	13422372	3R_13422372_SNP [dm3] 3R_17596650_SNP [dm6]	T	C	7.353e^-5	0.479	NON_SYNONYMOUS_CODING CG7606 DOWNSTREAM Sgs5
3R	12704952	3R_12704952_SNP [dm3] 3R_16879230_SNP [dm6]	A	G	7.373e^-5	0.479	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	13067482	X_13067482_SNP [dm3] X_13173449_SNP [dm6]	G	A	7.466e^-5	0.481	INTRON CG34411	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25158981	3R_25158981_SNP [dm3] 3R_29333259_SNP [dm6]	C	T	7.468e^-5	0.481	INTERGENIC
3R	7376928	3R_7376928_SNP [dm3] 3R_11551206_SNP [dm6]	G	T	7.484e^-5	0.481	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16330760	X_16330760_SNP [dm3] X_16436727_SNP [dm6]	A	T	7.633e^-5	0.482	NON_SYNONYMOUS_CODING hang DOWNSTREAM CG9947	TF binding site mE1_TFBS_cad
2L	11159342	2L_11159342_SNP [dm3] 2L_11159342_SNP [dm6]	G	A	7.637e^-5	0.482	SYNONYMOUS_CODING Ca-beta UTR_3_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14285445	2R_14285445_SNP [dm3] 2R_18397940_SNP [dm6]	C	T	7.643e^-5	0.482	UPSTREAM GstE1 & 1 other INTRON GstE10
3L	22183288	3L_22183288_SNP [dm3] 3L_22190188_SNP [dm6]	T	C	7.656e^-5	0.482	INTRON olf413
3R	7881482	3R_7881482_SNP [dm3] 3R_12055760_SNP [dm6]	T	A	7.673e^-5	0.482	INTERGENIC
3R	26492591	3R_26492591_SNP [dm3] 3R_30666869_SNP [dm6]	G	T	7.729e^-5	0.482	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	14104692	2L_14104692_SNP [dm3] 2L_14104692_SNP [dm6]	C	T	7.775e^-5	0.482	SYNONYMOUS_CODING CG16879	TF binding site mE1_TFBS_cad
X	16145088	X_16145088_SNP [dm3] X_16251055_SNP [dm6]	T	C	7.800e^-5	0.482	INTERGENIC
3R	25016011	3R_25016011_SNP [dm3] 3R_29190289_SNP [dm6]	A	T	7.818e^-5	0.482	INTRON CG14509
2R	19484459	2R_19484459_SNP [dm3] 2R_23596936_SNP [dm6]	G	A	7.827e^-5	0.482	SYNONYMOUS_CODING apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7880074	3R_7880074_SNP [dm3] 3R_12054352_SNP [dm6]	G	A	7.853e^-5	0.482	INTERGENIC
2L	10534565	2L_10534565_DEL [dm3] 2L_10534565_DEL [dm6]	AA	A	7.883e^-5	0.482	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
2R	1349805	2R_1349805_SNP [dm3] 2R_5462300_SNP [dm6]	T	C	7.923e^-5	0.482	INTERGENIC	transposable element FlyBase
2R	7581108	2R_7581108_SNP [dm3] 2R_11693603_SNP [dm6]	T	C	7.969e^-5	0.482	INTRON CG13197
2L	9758972	2L_9758972_SNP [dm3] 2L_9758972_SNP [dm6]	C	T	7.986e^-5	0.482	INTRON zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	9413701	2L_9413701_SNP [dm3] 2L_9413701_SNP [dm6]	C	A	8.002e^-5	0.482	INTRON Shawl
2L	16335886	2L_16335886_SNP [dm3] 2L_16335886_SNP [dm6]	T	C	8.015e^-5	0.482	NON_SYNONYMOUS_CODING CG31817
2L	1538937	2L_1538937_SNP [dm3] 2L_1538937_SNP [dm6]	C	T	8.029e^-5	0.482	INTERGENIC
2R	1298917	2R_1298917_DEL [dm3] 2R_5411412_DEL [dm6]	TGGCAATAACT...	T	8.054e^-5	0.482	INTERGENIC	transposable element FlyBase
3R	9224091	3R_9224091_SNP [dm3] 3R_13398369_SNP [dm6]	C	A	8.064e^-5	0.482	UTR_3_PRIME CG14377 DOWNSTREAM CG9796 & 1 other
3L	16954178	3L_16954178_SNP [dm3] 3L_16961078_SNP [dm6]	C	T	8.108e^-5	0.482	INTRON Nc73EF
3L	13736129	3L_13736129_SNP [dm3] 3L_13743029_SNP [dm6]	A	C	8.151e^-5	0.482	INTRON bru-3
3R	7687403	3R_7687403_SNP [dm3] 3R_11861681_SNP [dm6]	A	T	8.169e^-5	0.482	INTRON CG6959
3R	17710220	3R_17710220_SNP [dm3] 3R_21884498_SNP [dm6]	A	G	8.261e^-5	0.482	UPSTREAM CR45046 & 1 other DOWNSTREAM CG17819 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	25268109	3R_25268109_SNP [dm3] 3R_29442387_SNP [dm6]	G	A	8.266e^-5	0.482	INTRON Ptp99A
3L	13721035	3L_13721035_SNP [dm3] 3L_13727935_SNP [dm6]	A	G	8.312e^-5	0.482	INTRON bru-3
3L	12310460	3L_12310460_SNP [dm3] 3L_12317360_SNP [dm6]	A	G	8.402e^-5	0.482	INTERGENIC
2R	12314919	2R_12314919_SNP [dm3] 2R_16427414_SNP [dm6]	A	C	8.423e^-5	0.482	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9858760	3R_9858760_SNP [dm3] 3R_14033038_SNP [dm6]	G	A	8.449e^-5	0.482	UPSTREAM rdx INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	7883893	3R_7883893_SNP [dm3] 3R_12058171_SNP [dm6]	C	T	8.519e^-5	0.482	INTERGENIC
2R	11072558	2R_11072558_SNP [dm3] 2R_15185053_SNP [dm6]	T	A	8.538e^-5	0.482	UPSTREAM CG43068 INTRON igl
3L	10094548	3L_10094548_SNP [dm3] 3L_10101448_SNP [dm6]	T	G	8.574e^-5	0.482	UPSTREAM CG42826 INTRON dpr6
3R	10202494	3R_10202494_SNP [dm3] 3R_14376772_SNP [dm6]	A	T	8.631e^-5	0.482	EXON CR44943	TF binding site BDTNP1_TFBS_dl
3R	6577205	3R_6577205_SNP [dm3] 3R_10751483_SNP [dm6]	G	A	8.638e^-5	0.482	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3L	9749375	3L_9749375_SNP [dm3] 3L_9756275_SNP [dm6]	C	T	8.725e^-5	0.482	INTRON CG42268
2R	16829653	2R_16829653_SNP [dm3] 2R_20942148_SNP [dm6]	C	T	8.759e^-5	0.482	INTERGENIC
2R	7581124	2R_7581124_SNP [dm3] 2R_11693619_SNP [dm6]	T	C	8.762e^-5	0.482	INTRON CG13197
3L	3779575	3L_3779575_SNP [dm3] 3L_3779575_SNP [dm6]	C	T	8.860e^-5	0.482	INTRON CG32264
3L	4364459	3L_4364459_SNP [dm3] 3L_4364459_SNP [dm6]	A	T	8.873e^-5	0.482	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20608342	3R_20608342_SNP [dm3] 3R_24782620_SNP [dm6]	A	T	8.944e^-5	0.482	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2L	8651376	2L_8651376_SNP [dm3] 2L_8651376_SNP [dm6]	A	T	8.957e^-5	0.482	INTRON Sema-1a
2L	9170893	2L_9170893_SNP [dm3] 2L_9170893_SNP [dm6]	T	C	8.987e^-5	0.482	INTRON tai
2R	9181478	2R_9181478_SNP [dm3] 2R_13293973_SNP [dm6]	G	A	9.015e^-5	0.482	INTRON Dh31-R
3R	6577254	3R_6577254_SNP [dm3] 3R_10751532_SNP [dm6]	C	A	9.030e^-5	0.482	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
2L	10707152	2L_10707152_SNP [dm3] 2L_10707152_SNP [dm6]	C	T	9.032e^-5	0.482	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
3R	10190461	3R_10190461_SNP [dm3] 3R_14364739_SNP [dm6]	G	T	9.041e^-5	0.482	INTRON NK7.1
3L	14183208	3L_14183208_DEL [dm3] 3L_14190108_DEL [dm6]	CAATACTCAAAATTTCACTT...	C	9.076e^-5	0.482	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
3R	6543010	3R_6543010_SNP [dm3] 3R_10717288_SNP [dm6]	G	C	9.091e^-5	0.482	INTERGENIC
3R	6578030	3R_6578030_SNP [dm3] 3R_10752308_SNP [dm6]	C	T	9.091e^-5	0.482	INTERGENIC	regulatory region REDfly_CRMs
2L	21747097	2L_21747097_SNP [dm3] 2L_21747097_SNP [dm6]	C	A	9.103e^-5	0.482	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17588315	3L_17588315_SNP [dm3] 3L_17595215_SNP [dm6]	T	G	9.104e^-5	0.482	INTRON Eip74EF
2R	20179296	2R_20179296_DEL [dm3] 2R_24291773_DEL [dm6]	GG	G	9.124e^-5	0.482	DOWNSTREAM nvy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	7392452	3L_7392452_SNP [dm3] 3L_7399352_SNP [dm6]	A	T	9.146e^-5	0.482	SYNONYMOUS_CODING CG8562 UPSTREAM CG18417	TF binding site mE1_TFBS_cad
3L	18050959	3L_18050959_INS [dm3] 3L_18057859_INS [dm6]	A	AATAT	9.158e^-5	0.482	INTRON Eip75B
2R	6449715	2R_6449715_SNP [dm3] 2R_10562210_SNP [dm6]	G	A	9.233e^-5	0.482	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18806233	3R_18806233_SNP [dm3] 3R_22980511_SNP [dm6]	G	A	9.261e^-5	0.482	DOWNSTREAM Nha2 INTERGENIC
3R	24377106	3R_24377106_SNP [dm3] 3R_28551384_SNP [dm6]	A	T	9.302e^-5	0.482	INTERGENIC
X	17206152	X_17206152_SNP [dm3] X_17312119_SNP [dm6]	T	G	9.367e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12894050	3L_12894050_SNP [dm3] 3L_12900950_SNP [dm6]	G	A	9.377e^-5	0.482	DOWNSTREAM CG12520 INTERGENIC
2L	1671579	2L_1671579_SNP [dm3] 2L_1671579_SNP [dm6]	T	G	9.427e^-5	0.482	INTRON chinmo
2L	11159420	2L_11159420_SNP [dm3] 2L_11159420_SNP [dm6]	G	A	9.433e^-5	0.482	SYNONYMOUS_CODING Ca-beta UTR_3_PRIME Ca-beta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6711087	X_6711087_SNP [dm3] X_6817054_SNP [dm6]	C	A	9.435e^-5	0.482	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_chinmo
3R	6577261	3R_6577261_SNP [dm3] 3R_10751539_SNP [dm6]	T	A	9.444e^-5	0.482	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3R	6577299	3R_6577299_SNP [dm3] 3R_10751577_SNP [dm6]	T	A	9.444e^-5	0.482	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3R	6577301	3R_6577301_SNP [dm3] 3R_10751579_SNP [dm6]	G	A	9.444e^-5	0.482	UPSTREAM TkR86C INTERGENIC	regulatory region REDfly_CRMs
3R	21500421	3R_21500421_SNP [dm3] 3R_25674699_SNP [dm6]	C	T	9.500e^-5	0.482	INTRON Lgr3
2R	4197957	2R_4197957_SNP [dm3] 2R_8310452_SNP [dm6]	C	T	9.504e^-5	0.482	DOWNSTREAM CR44449 & 1 other INTERGENIC
2R	6450088	2R_6450088_INS [dm3] 2R_10562583_INS [dm6]	A	ATTA	9.530e^-5	0.482	INTRON psq	TF binding site BDTNP1_TFBS_twi
2L	10534629	2L_10534629_SNP [dm3] 2L_10534629_SNP [dm6]	T	A	9.533e^-5	0.482	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
3L	10262262	3L_10262262_SNP [dm3] 3L_10269162_SNP [dm6]	A	C	9.548e^-5	0.482	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3L	14183173	3L_14183173_SNP [dm3] 3L_14190073_SNP [dm6]	T	A	9.585e^-5	0.482	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23984245	3R_23984245_SNP [dm3] 3R_28158523_SNP [dm6]	T	A	9.618e^-5	0.482	INTRON CG34354
3R	13586400	3R_13586400_DEL [dm3] 3R_17760678_DEL [dm6]	AA	A	9.628e^-5	0.482	INTRON TyrR
3R	21563319	3R_21563319_SNP [dm3] 3R_25737597_SNP [dm6]	C	T	9.654e^-5	0.482	INTRON LpR2	TF binding site mE1_TFBS_Trl
2L	16335634	2L_16335634_SNP [dm3] 2L_16335634_SNP [dm6]	G	C	9.656e^-5	0.482	NON_SYNONYMOUS_CODING CG31817
2R	17618532	2R_17618532_INS [dm3] 2R_21731027_INS [dm6]	T	TT	9.671e^-5	0.482	INTERGENIC
3L	11227870	3L_11227870_SNP [dm3] 3L_11234770_SNP [dm6]	G	A	9.680e^-5	0.482	INTRON Ir68a
2R	1593675	2R_1593675_SNP [dm3] 2R_5706170_SNP [dm6]	C	T	9.712e^-5	0.482	DOWNSTREAM ap & 1 other INTERGENIC
3R	24477007	3R_24477007_SNP [dm3] 3R_28651285_SNP [dm6]	T	A	9.714e^-5	0.482	UPSTREAM CG31050 INTERGENIC
3R	8630213	3R_8630213_SNP [dm3] 3R_12804491_SNP [dm6]	C	G	9.750e^-5	0.482	INTERGENIC
3R	25486780	3R_25486780_SNP [dm3] 3R_29661058_SNP [dm6]	G	C	9.793e^-5	0.482	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	4364368	3L_4364368_SNP [dm3] 3L_4364368_SNP [dm6]	G	A	9.797e^-5	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14182976	3L_14182976_SNP [dm3] 3L_14189876_SNP [dm6]	T	G	9.808e^-5	0.482	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15051959	2R_15051959_SNP [dm3] 2R_19164454_SNP [dm6]	G	T	9.815e^-5	0.482	DOWNSTREAM ena INTRON CG10737	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	13738792	3L_13738792_SNP [dm3] 3L_13745692_SNP [dm6]	A	T	9.819e^-5	0.482	INTRON bru-3
3R	12922643	3R_12922643_SNP [dm3] 3R_17096921_SNP [dm6]	A	G	9.832e^-5	0.482	INTRON cher
3R	10552763	3R_10552763_SNP [dm3] 3R_14727041_SNP [dm6]	T	A	9.850e^-5	0.482	INTRON CG7530
2L	9754953	2L_9754953_SNP [dm3] 2L_9754953_SNP [dm6]	T	G	9.859e^-5	0.482	INTERGENIC
3R	25978210	3R_25978210_SNP [dm3] 3R_30152488_SNP [dm6]	G	A	9.901e^-5	0.482	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6561892	2R_6561892_SNP [dm3] 2R_10674387_SNP [dm6]	C	T	9.927e^-5	0.482	INTRON stan	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18479090	3L_18479090_DEL [dm3] 3L_18485990_DEL [dm6]	ACAACC	A	1.001e^-4	0.482	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
3L	18885446	3L_18885446_SNP [dm3] 3L_18892346_SNP [dm6]	G	A	1.003e^-4	0.482	UPSTREAM NijB DOWNSTREAM CG3902 INTERGENIC	TF binding site mE1_TFBS_bab1
X	12322398	X_12322398_SNP [dm3] X_12428365_SNP [dm6]	C	T	1.007e^-4	0.482	INTERGENIC
3L	2578856	3L_2578856_SNP [dm3] 3L_2578856_SNP [dm6]	C	A	1.008e^-4	0.482	INTRON msn	TF binding site BDTNP1_TFBS_twi
2L	1538934	2L_1538934_SNP [dm3] 2L_1538934_SNP [dm6]	G	T	1.009e^-4	0.482	INTERGENIC
2R	11460420	2R_11460420_SNP [dm3] 2R_15572915_SNP [dm6]	T	C	1.012e^-4	0.482	NON_SYNONYMOUS_CODING CG30466 DOWNSTREAM CG8204
2R	7277048	2R_7277048_SNP [dm3] 2R_11389543_SNP [dm6]	C	T	1.013e^-4	0.482	UPSTREAM CG30022 INTRON sprt
3L	5525371	3L_5525371_SNP [dm3] 3L_5532271_SNP [dm6]	C	A	1.029e^-4	0.482	INTERGENIC
2L	5106252	2L_5106252_SNP [dm3] 2L_5106252_SNP [dm6]	C	T	1.033e^-4	0.482	INTRON Msp300
3R	12855693	3R_12855693_SNP [dm3] 3R_17029971_SNP [dm6]	A	G	1.033e^-4	0.482	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	4209652	2L_4209652_SNP [dm3] 2L_4209652_SNP [dm6]	T	C	1.038e^-4	0.482	SYNONYMOUS_CODING ft
X	11517497	X_11517497_SNP [dm3] X_11623464_SNP [dm6]	G	T	1.038e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12296801	2L_12296801_SNP [dm3] 2L_12296801_SNP [dm6]	G	T	1.041e^-4	0.482	INTRON aret
2L	1412964	2L_1412964_SNP [dm3] 2L_1412964_SNP [dm6]	T	C	1.045e^-4	0.482	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	11517186	X_11517186_SNP [dm3] X_11623153_SNP [dm6]	C	T	1.046e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7795913	2R_7795913_SNP [dm3] 2R_11908408_SNP [dm6]	T	A	1.058e^-4	0.482	INTRON CG13183
3R	7880806	3R_7880806_DEL [dm3] 3R_12055084_DEL [dm6]	CATGCAAT	C	1.059e^-4	0.482	INTERGENIC
3R	22115069	3R_22115069_SNP [dm3] 3R_26289347_SNP [dm6]	C	T	1.065e^-4	0.482	INTERGENIC
3R	27011788	3R_27011788_SNP [dm3] 3R_31186066_SNP [dm6]	A	T	1.066e^-4	0.482	INTRON mesh
X	17283639	X_17283639_SNP [dm3] X_17389606_SNP [dm6]	T	A	1.069e^-4	0.482	INTERGENIC
3R	16306114	3R_16306114_SNP [dm3] 3R_20480392_SNP [dm6]	C	T	1.069e^-4	0.482	INTRON Gfrl
3R	19233214	3R_19233214_INS [dm3] 3R_23407492_INS [dm6]	T	TT	1.070e^-4	0.482	DOWNSTREAM Ir94e INTERGENIC
2L	17050446	2L_17050446_SNP [dm3] 2L_17050446_SNP [dm6]	A	T	1.071e^-4	0.482	INTERGENIC
3R	9921021	3R_9921021_SNP [dm3] 3R_14095299_SNP [dm6]	G	C	1.071e^-4	0.482	INTRON CCHa1
3R	9261864	3R_9261864_SNP [dm3] 3R_13436142_SNP [dm6]	T	A	1.071e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_sens
3R	22059157	3R_22059157_SNP [dm3] 3R_26233435_SNP [dm6]	A	T	1.071e^-4	0.482	UTR_3_PRIME CG12290 DOWNSTREAM CG12290
3L	11113284	3L_11113284_DEL [dm3] 3L_11120184_DEL [dm6]	CTGC	C	1.076e^-4	0.482	UPSTREAM fd68A & 1 other INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2821565	3L_2821565_SNP [dm3] 3L_2821565_SNP [dm6]	A	T	1.081e^-4	0.482	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5847187	X_5847187_SNP [dm3] X_5953154_SNP [dm6]	A	T	1.083e^-4	0.482	INTRON CG6048
2R	14157474	2R_14157474_SNP [dm3] 2R_18269969_SNP [dm6]	T	G	1.085e^-4	0.482	INTERGENIC
3L	12310447	3L_12310447_DEL [dm3] 3L_12317347_DEL [dm6]	ATCGATAAAA	A	1.088e^-4	0.482	INTERGENIC
2L	14104700	2L_14104700_SNP [dm3] 2L_14104700_SNP [dm6]	C	A	1.093e^-4	0.482	NON_SYNONYMOUS_CODING CG16879	TF binding site mE1_TFBS_cad
2L	18660104	2L_18660104_SNP [dm3] 2L_18660104_SNP [dm6]	G	C	1.095e^-4	0.482	INTRON MESR3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14077958	2R_14077958_SNP [dm3] 2R_18190453_SNP [dm6]	T	C	1.096e^-4	0.482	DOWNSTREAM CG14500 INTRON CG33958
3R	9261928	3R_9261928_SNP [dm3] 3R_13436206_SNP [dm6]	G	A	1.097e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_hkb
2L	8047903	2L_8047903_SNP [dm3] 2L_8047903_SNP [dm6]	A	C	1.102e^-4	0.482	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	9840881	2L_9840881_DEL [dm3] 2L_9840881_DEL [dm6]	AA	A	1.104e^-4	0.482	INTRON nAChRalpha6
2L	19396540	2L_19396540_SNP [dm3] 2L_19396540_SNP [dm6]	A	T	1.107e^-4	0.482	DOWNSTREAM CG31798 INTRON CG17544
2L	12066245	2L_12066245_SNP [dm3] 2L_12066245_SNP [dm6]	A	T	1.113e^-4	0.482	UTR_5_PRIME CG14946 INTRON CG14946	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	18063466	X_18063466_SNP [dm3] X_18169433_SNP [dm6]	C	T	1.119e^-4	0.482	INTRON Frq1
2R	14189308	2R_14189308_SNP [dm3] 2R_18301803_SNP [dm6]	A	G	1.120e^-4	0.482	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20509437	2R_20509437_SNP [dm3] 2R_24621914_SNP [dm6]	C	T	1.121e^-4	0.482	INTRON CG13594
2L	16447864	2L_16447864_SNP [dm3] 2L_16447864_SNP [dm6]	C	T	1.121e^-4	0.482	INTRON CG5888 & 1 other	TF binding site mE1_TFBS_Trl
2R	1778923	2R_1778923_SNP [dm3] 2R_5891418_SNP [dm6]	C	T	1.125e^-4	0.482	INTERGENIC
3L	5249505	3L_5249505_SNP [dm3] 3L_5256405_SNP [dm6]	C	T	1.126e^-4	0.482	INTRON shep
3R	6575103	3R_6575103_SNP [dm3] 3R_10749381_SNP [dm6]	T	A	1.127e^-4	0.482	INTRON TkR86C
3R	15246570	3R_15246570_SNP [dm3] 3R_19420848_SNP [dm6]	G	A	1.128e^-4	0.482	INTRON CG31221
2R	17916436	2R_17916436_DEL [dm3] 2R_22028931_DEL [dm6]	CAC	C	1.132e^-4	0.482	INTRON CG34370
X	11517509	X_11517509_SNP [dm3] X_11623476_SNP [dm6]	A	G	1.133e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7876900	3R_7876900_SNP [dm3] 3R_12051178_SNP [dm6]	G	A	1.134e^-4	0.482	INTERGENIC
2L	21870853	2L_21870853_SNP [dm3] 2L_21870853_SNP [dm6]	C	T	1.134e^-4	0.482	UPSTREAM CR44920 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27249860	3R_27249860_SNP [dm3] 3R_31424138_SNP [dm6]	C	T	1.139e^-4	0.482	INTRON Gprk2
3R	22115612	3R_22115612_SNP [dm3] 3R_26289890_SNP [dm6]	C	T	1.141e^-4	0.482	INTERGENIC
2R	19484550	2R_19484550_SNP [dm3] 2R_23597027_SNP [dm6]	A	C	1.144e^-4	0.482	INTRON apt	TF binding site mE1_TFBS_sens
3R	8769667	3R_8769667_SNP [dm3] 3R_12943945_SNP [dm6]	G	A	1.146e^-4	0.482	INTERGENIC
3R	27389297	3R_27389297_INS [dm3] 3R_31563575_INS [dm6]	T	TAG	1.150e^-4	0.482	INTRON nyo
3R	17710322	3R_17710322_SNP [dm3] 3R_21884600_SNP [dm6]	T	C	1.152e^-4	0.482	UPSTREAM CR45046 & 1 other DOWNSTREAM CG17819 & 1 other INTERGENIC
3R	18651532	3R_18651532_SNP [dm3] 3R_22825810_SNP [dm6]	C	T	1.160e^-4	0.482	EXON CR44350
3R	3964138	3R_3964138_SNP [dm3] 3R_8138416_SNP [dm6]	A	G	1.160e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	1305234	2R_1305234_SNP [dm3] 2R_5417729_SNP [dm6]	G	A	1.164e^-4	0.482	INTRON laccase2	TF binding site BDTNP1_TFBS_dl
3R	7882050	3R_7882050_SNP [dm3] 3R_12056328_SNP [dm6]	C	A	1.165e^-4	0.482	INTERGENIC
2R	14285410	2R_14285410_SNP [dm3] 2R_18397905_SNP [dm6]	A	G	1.167e^-4	0.482	UPSTREAM GstE1 & 1 other INTRON GstE10
X	2487827	X_2487827_SNP [dm3] X_2593794_SNP [dm6]	C	G	1.167e^-4	0.482	UTR_5_PRIME egh INTRON egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4207440	2L_4207440_SNP [dm3] 2L_4207440_SNP [dm6]	A	G	1.174e^-4	0.482	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7795904	2R_7795904_SNP [dm3] 2R_11908399_SNP [dm6]	C	G	1.178e^-4	0.482	INTRON CG13183
3R	10049336	3R_10049336_DEL [dm3] 3R_14223614_DEL [dm6]	ATTCCTA	A	1.185e^-4	0.482	INTRON Sp212	TF binding site mE1_TFBS_HSA
X	3985693	X_3985693_SNP [dm3] X_4091660_SNP [dm6]	G	A	1.188e^-4	0.482	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
3L	10279950	3L_10279950_SNP [dm3] 3L_10286850_SNP [dm6]	C	A	1.191e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9555553	3R_9555553_SNP [dm3] 3R_13729831_SNP [dm6]	A	T	1.191e^-4	0.482	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14286011	2R_14286011_SNP [dm3] 2R_18398506_SNP [dm6]	G	T	1.197e^-4	0.482	NON_SYNONYMOUS_CODING GstE1 UTR_5_PRIME GstE10 UPSTREAM GstE10 & 1 other
2L	9588298	2L_9588298_SNP [dm3] 2L_9588298_SNP [dm6]	G	A	1.200e^-4	0.482	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4364365	3L_4364365_SNP [dm3] 3L_4364365_SNP [dm6]	G	T	1.202e^-4	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17026971	2R_17026971_SNP [dm3] 2R_21139466_SNP [dm6]	A	G	1.204e^-4	0.482	INTRON Magi
3R	8733758	3R_8733758_SNP [dm3] 3R_12908036_SNP [dm6]	C	T	1.204e^-4	0.482	INTERGENIC
2L	16377037	2L_16377037_SNP [dm3] 2L_16377037_SNP [dm6]	T	A	1.205e^-4	0.482	INTERGENIC
3R	22102300	3R_22102300_SNP [dm3] 3R_26276578_SNP [dm6]	G	A	1.206e^-4	0.482	UTR_3_PRIME CG6154
2R	20511152	2R_20511152_SNP [dm3] 2R_24623629_SNP [dm6]	C	A	1.206e^-4	0.482	INTRON CG13594	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17766049	3L_17766049_SNP [dm3] 3L_17772949_SNP [dm6]	T	C	1.213e^-4	0.482	INTERGENIC
2R	3058511	2R_3058511_DEL [dm3] 2R_7171006_DEL [dm6]	CGAGAGAGC	C	1.213e^-4	0.482	INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18523838	3R_18523838_SNP [dm3] 3R_22698116_SNP [dm6]	T	A	1.215e^-4	0.482	UPSTREAM Cyp6d4 DOWNSTREAM cd INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17762137	3L_17762137_SNP [dm3] 3L_17769037_SNP [dm6]	C	A	1.219e^-4	0.482	INTERGENIC
3R	10085621	3R_10085621_SNP [dm3] 3R_14259899_SNP [dm6]	A	T	1.224e^-4	0.482	SYNONYMOUS_CODING Aats-met DOWNSTREAM CG14840	TF binding site BDTNP1_TFBS_dl
3L	16716900	3L_16716900_SNP [dm3] 3L_16723800_SNP [dm6]	A	G	1.225e^-4	0.482	UTR_3_PRIME Dab DOWNSTREAM CG13026	TF binding site mE1_TFBS_cad
X	3985697	X_3985697_SNP [dm3] X_4091664_SNP [dm6]	T	C	1.230e^-4	0.482	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
2L	10977585	2L_10977585_SNP [dm3] 2L_10977585_SNP [dm6]	C	T	1.232e^-4	0.482	INTRON SCAR	TF binding site BDTNP1_TFBS_prd
3L	13739825	3L_13739825_SNP [dm3] 3L_13746725_SNP [dm6]	G	A	1.236e^-4	0.482	INTRON bru-3
3R	7395561	3R_7395561_INS [dm3] 3R_11569839_INS [dm6]	G	GTGTACGG	1.237e^-4	0.482	INTRON Mrp4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13614339	2R_13614339_SNP [dm3] 2R_17726834_SNP [dm6]	C	T	1.238e^-4	0.482	UTR_5_PRIME Snx16 UPSTREAM CG4975 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	4364338	3L_4364338_SNP [dm3] 3L_4364338_SNP [dm6]	T	A	1.240e^-4	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17771139	3R_17771139_SNP [dm3] 3R_21945417_SNP [dm6]	A	T	1.240e^-4	0.482	INTERGENIC
3L	10556633	3L_10556633_SNP [dm3] 3L_10563533_SNP [dm6]	A	T	1.243e^-4	0.482	INTRON A2bp1
3R	17000446	3R_17000446_SNP [dm3] 3R_21174724_SNP [dm6]	T	C	1.245e^-4	0.482	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9361833	3R_9361833_SNP [dm3] 3R_13536111_SNP [dm6]	A	C	1.248e^-4	0.482	INTERGENIC
3L	19377516	3L_19377516_SNP [dm3] 3L_19384416_SNP [dm6]	A	T	1.249e^-4	0.482	INTRON CG32206
2L	855442	2L_855442_SNP [dm3] 2L_855442_SNP [dm6]	G	A	1.251e^-4	0.482	UTR_5_PRIME CG13949 UPSTREAM CG13949 DOWNSTREAM kraken	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25766105	3R_25766105_SNP [dm3] 3R_29940383_SNP [dm6]	G	C	1.252e^-4	0.482	NON_SYNONYMOUS_CODING CG15523
3R	2742962	3R_2742962_SNP [dm3] 3R_6917240_SNP [dm6]	G	T	1.255e^-4	0.482	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	18065572	X_18065572_SNP [dm3] X_18171539_SNP [dm6]	A	G	1.264e^-4	0.482	UTR_3_PRIME Frq1
3R	6009253	3R_6009253_SNP [dm3] 3R_10183531_SNP [dm6]	T	C	1.270e^-4	0.482	INTRON CG12814
X	18065569	X_18065569_SNP [dm3] X_18171536_SNP [dm6]	T	C	1.272e^-4	0.482	UTR_3_PRIME Frq1
2L	10534581	2L_10534581_SNP [dm3] 2L_10534581_SNP [dm6]	T	A	1.273e^-4	0.482	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
3R	2474301	3R_2474301_SNP [dm3] 3R_6648579_SNP [dm6]	C	A	1.275e^-4	0.482	NON_SYNONYMOUS_CODING Taf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17884043	2L_17884043_SNP [dm3] 2L_17884043_SNP [dm6]	C	T	1.286e^-4	0.482	INTERGENIC
3R	18512984	3R_18512984_SNP [dm3] 3R_22687262_SNP [dm6]	C	A	1.289e^-4	0.482	NON_SYNONYMOUS_CODING CG17625 UPSTREAM Gclm DOWNSTREAM wfs1	TF binding site BDTNP1_TFBS_dl
3R	14618656	3R_14618656_SNP [dm3] 3R_18792934_SNP [dm6]	T	A	1.293e^-4	0.482	UPSTREAM CG7720 INTRON CG7720
3R	6543032	3R_6543032_SNP [dm3] 3R_10717310_SNP [dm6]	G	A	1.300e^-4	0.482	INTERGENIC
2L	14098801	2L_14098801_SNP [dm3] 2L_14098801_SNP [dm6]	A	T	1.302e^-4	0.482	INTERGENIC
2R	19483188	2R_19483188_SNP [dm3] 2R_23595665_SNP [dm6]	T	A	1.302e^-4	0.482	UPSTREAM apt INTRON apt
3L	797108	3L_797108_SNP [dm3] 3L_797108_SNP [dm6]	C	T	1.303e^-4	0.482	INTERGENIC
3R	10577523	3R_10577523_SNP [dm3] 3R_14751801_SNP [dm6]	G	A	1.304e^-4	0.482	UTR_3_PRIME CG7362 UPSTREAM smp-30 INTRON jvl
3R	5125474	3R_5125474_SNP [dm3] 3R_9299752_SNP [dm6]	C	A	1.307e^-4	0.482	INTRON CG8861
2L	1908897	2L_1908897_SNP [dm3] 2L_1908897_SNP [dm6]	T	G	1.307e^-4	0.482	INTRON CG7337
2R	20509937	2R_20509937_SNP [dm3] 2R_24622414_SNP [dm6]	T	C	1.312e^-4	0.482	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27389292	3R_27389292_DEL [dm3] 3R_31563570_DEL [dm6]	TATCT	T	1.313e^-4	0.482	INTRON nyo
3R	13656218	3R_13656218_SNP [dm3] 3R_17830496_SNP [dm6]	T	C	1.315e^-4	0.482	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10285072	3R_10285072_SNP [dm3] 3R_14459350_SNP [dm6]	A	G	1.317e^-4	0.482	INTRON cv-c
3R	20842531	3R_20842531_SNP [dm3] 3R_25016809_SNP [dm6]	C	G	1.317e^-4	0.482	NON_SYNONYMOUS_CODING tnc
2L	4208985	2L_4208985_SNP [dm3] 2L_4208985_SNP [dm6]	T	C	1.318e^-4	0.482	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	25014563	3R_25014563_INS [dm3] 3R_29188841_INS [dm6]	G	GG	1.321e^-4	0.482	INTRON CG14509
2L	11274905	2L_11274905_SNP [dm3] 2L_11274905_SNP [dm6]	C	A	1.322e^-4	0.482	SYNONYMOUS_CODING cana	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	20651190	3L_20651190_SNP [dm3] 3L_20658090_SNP [dm6]	G	A	1.324e^-4	0.482	INTERGENIC
3R	19919356	3R_19919356_SNP [dm3] 3R_24093634_SNP [dm6]	A	G	1.336e^-4	0.482	INTRON 4EHP	TF binding site mE1_TFBS_HSA
2L	855279	2L_855279_SNP [dm3] 2L_855279_SNP [dm6]	C	T	1.336e^-4	0.482	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17769922	3R_17769922_INS [dm3] 3R_21944200_INS [dm6]	A	AACAGCAGCAACAGCAGCAA...	1.339e^-4	0.482	INTERGENIC
2L	9416427	2L_9416427_SNP [dm3] 2L_9416427_SNP [dm6]	G	A	1.343e^-4	0.482	UPSTREAM Mco1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26101753	3R_26101753_SNP [dm3] 3R_30276031_SNP [dm6]	T	C	1.349e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21901011	2L_21901011_SNP [dm3] 2L_21901011_SNP [dm6]	A	T	1.351e^-4	0.482	INTERGENIC
X	16558408	X_16558408_SNP [dm3] X_16664375_SNP [dm6]	C	G	1.356e^-4	0.482	NON_SYNONYMOUS_CODING CG15865 INTRON r
2R	1593676	2R_1593676_SNP [dm3] 2R_5706171_SNP [dm6]	T	A	1.359e^-4	0.482	DOWNSTREAM ap & 1 other INTERGENIC
2L	13057595	2L_13057595_SNP [dm3] 2L_13057595_SNP [dm6]	C	G	1.363e^-4	0.482	INTRON CG9932
2L	3367293	2L_3367293_SNP [dm3] 2L_3367293_SNP [dm6]	C	G	1.367e^-4	0.482	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
3R	9858924	3R_9858924_SNP [dm3] 3R_14033202_SNP [dm6]	C	T	1.368e^-4	0.482	INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	17768291	3R_17768291_SNP [dm3] 3R_21942569_SNP [dm6]	T	A	1.370e^-4	0.482	INTERGENIC
2L	5698215	2L_5698215_SNP [dm3] 2L_5698215_SNP [dm6]	G	A	1.375e^-4	0.482	INTERGENIC
2R	20509938	2R_20509938_SNP [dm3] 2R_24622415_SNP [dm6]	G	T	1.376e^-4	0.482	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9226818	3R_9226818_SNP [dm3] 3R_13401096_SNP [dm6]	T	A	1.382e^-4	0.482	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3791103	2L_3791103_SNP [dm3] 2L_3791103_SNP [dm6]	C	A	1.388e^-4	0.482	SYNONYMOUS_CODING CG3921
2R	13380839	2R_13380839_SNP [dm3] 2R_17493334_SNP [dm6]	C	T	1.388e^-4	0.482	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	11176768	3R_11176768_SNP [dm3] 3R_15351046_SNP [dm6]	G	T	1.389e^-4	0.482	UPSTREAM CG5038 & 1 other DOWNSTREAM CG42726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18500670	3R_18500670_SNP [dm3] 3R_22674948_SNP [dm6]	A	G	1.395e^-4	0.482	INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Trl
2L	21746983	2L_21746983_SNP [dm3] 2L_21746983_SNP [dm6]	A	T	1.399e^-4	0.482	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10503273	3L_10503273_SNP [dm3] 3L_10510173_SNP [dm6]	A	T	1.399e^-4	0.482	INTRON A2bp1
2R	19287797	2R_19287797_SNP [dm3] 2R_23400274_SNP [dm6]	C	T	1.407e^-4	0.482	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
3L	10503324	3L_10503324_SNP [dm3] 3L_10510224_SNP [dm6]	G	A	1.409e^-4	0.482	INTRON A2bp1
3R	7395656	3R_7395656_SNP [dm3] 3R_11569934_SNP [dm6]	G	A	1.411e^-4	0.482	INTRON Mrp4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17206157	X_17206157_SNP [dm3] X_17312124_SNP [dm6]	C	T	1.411e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12597565	2R_12597565_SNP [dm3] 2R_16710060_SNP [dm6]	G	A	1.414e^-4	0.482	INTRON CG30463
3L	23051487	3L_23051487_SNP [dm3] 3L_23058387_SNP [dm6]	G	A	1.415e^-4	0.482	INTERGENIC	transposable element FlyBase
3L	16423389	3L_16423389_SNP [dm3] 3L_16430289_SNP [dm6]	C	T	1.418e^-4	0.482	INTRON CG33158 & 1 other
3R	18991829	3R_18991829_SNP [dm3] 3R_23166107_SNP [dm6]	A	T	1.418e^-4	0.482	INTERGENIC
X	17206178	X_17206178_SNP [dm3] X_17312145_SNP [dm6]	T	C	1.422e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17230767	3L_17230767_SNP [dm3] 3L_17237667_SNP [dm6]	T	G	1.423e^-4	0.482	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7126086	3L_7126086_DEL [dm3] 3L_7132986_DEL [dm6]	GT	G	1.423e^-4	0.482	INTRON Dbi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3R	18639639	3R_18639639_SNP [dm3] 3R_22813917_SNP [dm6]	T	C	1.428e^-4	0.482	DOWNSTREAM CG13840 INTERGENIC
3R	12919726	3R_12919726_SNP [dm3] 3R_17094004_SNP [dm6]	G	C	1.430e^-4	0.482	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26151309	3R_26151309_SNP [dm3] 3R_30325587_SNP [dm6]	C	A	1.430e^-4	0.482	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	907024	3L_907024_SNP [dm3] 3L_907024_SNP [dm6]	T	C	1.436e^-4	0.482	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14189663	3L_14189663_SNP [dm3] 3L_14196563_SNP [dm6]	G	A	1.438e^-4	0.482	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10503096	3L_10503096_SNP [dm3] 3L_10509996_SNP [dm6]	G	C	1.438e^-4	0.482	INTRON A2bp1
3L	4364469	3L_4364469_SNP [dm3] 3L_4364469_SNP [dm6]	G	T	1.438e^-4	0.482	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18268549	3R_18268549_SNP [dm3] 3R_22442827_SNP [dm6]	T	C	1.439e^-4	0.482	SYNONYMOUS_CODING CG12499
2L	10491763	2L_10491763_SNP [dm3] 2L_10491763_SNP [dm6]	T	C	1.439e^-4	0.482	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
2R	9207239	2R_9207239_SNP [dm3] 2R_13319734_SNP [dm6]	T	C	1.439e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_inv
2L	21747825	2L_21747825_SNP [dm3] 2L_21747825_SNP [dm6]	C	A	1.442e^-4	0.482	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14610713	3R_14610713_SNP [dm3] 3R_18784991_SNP [dm6]	C	A	1.444e^-4	0.482	INTRON CG7720
3L	5524290	3L_5524290_SNP [dm3] 3L_5531190_SNP [dm6]	A	T	1.448e^-4	0.482	INTERGENIC
2R	19960120	2R_19960120_SNP [dm3] 2R_24072597_SNP [dm6]	T	G	1.448e^-4	0.482	INTRON CG3209
X	18063824	X_18063824_SNP [dm3] X_18169791_SNP [dm6]	G	A	1.454e^-4	0.482	SPLICE_SITE_REGION Frq1 INTRON Frq1
3R	26524941	3R_26524941_INS [dm3] 3R_30699219_INS [dm6]	G	GA	1.458e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	23159172	3R_23159172_SNP [dm3] 3R_27333450_SNP [dm6]	C	T	1.458e^-4	0.482	INTERGENIC
3R	9876802	3R_9876802_SNP [dm3] 3R_14051080_SNP [dm6]	A	T	1.460e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5968490	2L_5968490_SNP [dm3] 2L_5968490_SNP [dm6]	T	A	1.463e^-4	0.482	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11517282	X_11517282_SNP [dm3] X_11623249_SNP [dm6]	T	A	1.464e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9830881	2L_9830881_SNP [dm3] 2L_9830881_SNP [dm6]	G	A	1.467e^-4	0.482	INTRON nAChRalpha6
3R	13441042	3R_13441042_SNP [dm3] 3R_17615320_SNP [dm6]	A	T	1.472e^-4	0.482	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	22303331	3R_22303331_DEL [dm3] 3R_26477609_DEL [dm6]	AAG	T	1.474e^-4	0.482	INTRON plum	TF binding site mE1_TFBS_inv
3L	4089774	3L_4089774_SNP [dm3] 3L_4089774_SNP [dm6]	G	C	1.477e^-4	0.482	INTRON CG14989
2L	9838913	2L_9838913_INS [dm3] 2L_9838913_INS [dm6]	T	TT	1.482e^-4	0.482	INTRON nAChRalpha6
3R	1552849	3R_1552849_SNP [dm3] 3R_5727127_SNP [dm6]	G	A	1.483e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	3998957	3L_3998957_SNP [dm3] 3L_3998957_SNP [dm6]	C	A	1.485e^-4	0.482	INTERGENIC
2L	10491584	2L_10491584_SNP [dm3] 2L_10491584_SNP [dm6]	C	A	1.497e^-4	0.482	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
3R	21563621	3R_21563621_SNP [dm3] 3R_25737899_SNP [dm6]	C	A	1.499e^-4	0.482	INTRON LpR2	TF binding site mE1_TFBS_Trl
3R	17326987	3R_17326987_SNP [dm3] 3R_21501265_SNP [dm6]	G	A	1.503e^-4	0.482	INTRON C15
3L	5523578	3L_5523578_SNP [dm3] 3L_5530478_SNP [dm6]	C	A	1.504e^-4	0.482	INTERGENIC
3R	2424708	3R_2424708_SNP [dm3] 3R_6598986_SNP [dm6]	T	A	1.506e^-4	0.482	UPSTREAM CG1138 INTERGENIC
2R	16193237	2R_16193237_SNP [dm3] 2R_20305732_SNP [dm6]	C	G	1.507e^-4	0.482	INTRON CG11200
3L	17618513	3L_17618513_SNP [dm3] 3L_17625413_SNP [dm6]	A	G	1.508e^-4	0.482	INTRON CG7510	TF binding site mE1_TFBS_inv
3R	7867311	3R_7867311_SNP [dm3] 3R_12041589_SNP [dm6]	G	T	1.511e^-4	0.482	SYNONYMOUS_CODING CG14736
3R	15278065	3R_15278065_SNP [dm3] 3R_19452343_SNP [dm6]	A	G	1.517e^-4	0.482	INTRON CG31221	TF binding site mE1_TFBS_Kr
3L	1362975	3L_1362975_SNP [dm3] 3L_1362975_SNP [dm6]	T	G	1.522e^-4	0.482	INTRON Ptp61F
X	14942614	X_14942614_SNP [dm3] X_15048581_SNP [dm6]	A	G	1.523e^-4	0.482	UPSTREAM CG5541 INTRON hiw & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv transposable element FlyBase
X	14942616	X_14942616_SNP [dm3] X_15048583_SNP [dm6]	T	A	1.523e^-4	0.482	UPSTREAM CG5541 INTRON hiw & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv transposable element FlyBase
X	16331693	X_16331693_DEL [dm3] X_16437660_DEL [dm6]	TCTGACTTAAATTTGACAAT...	T	1.525e^-4	0.482	UTR_3_PRIME hang & 1 other
3R	6009263	3R_6009263_SNP [dm3] 3R_10183541_SNP [dm6]	A	T	1.525e^-4	0.482	INTRON CG12814
3L	14183015	3L_14183015_SNP [dm3] 3L_14189915_SNP [dm6]	A	T	1.532e^-4	0.482	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22115695	3R_22115695_SNP [dm3] 3R_26289973_SNP [dm6]	A	T	1.535e^-4	0.482	INTERGENIC
3L	13741847	3L_13741847_SNP [dm3] 3L_13748747_SNP [dm6]	C	T	1.537e^-4	0.482	INTRON bru-3
2R	17024515	2R_17024515_SNP [dm3] 2R_21137010_SNP [dm6]	G	C	1.537e^-4	0.482	INTRON Magi	TF binding site mE1_TFBS_sens
X	17179062	X_17179062_SNP [dm3] X_17285029_SNP [dm6]	A	C	1.539e^-4	0.482	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2R	1837254	2R_1837254_SNP [dm3] 2R_5949749_SNP [dm6]	A	T	1.542e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	17216457	3L_17216457_SNP [dm3] 3L_17223357_SNP [dm6]	T	A	1.543e^-4	0.482	INTRON Rbp6
3R	11971125	3R_11971125_SNP [dm3] 3R_16145403_SNP [dm6]	T	C	1.544e^-4	0.482	UTR_3_PRIME CG5903 DOWNSTREAM CG5903 & 1 other	TF binding site mE1_TFBS_cad
2L	855430	2L_855430_SNP [dm3] 2L_855430_SNP [dm6]	A	C	1.547e^-4	0.482	UTR_5_PRIME CG13949 UPSTREAM CG13949 DOWNSTREAM kraken	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23802611	3R_23802611_SNP [dm3] 3R_27976889_SNP [dm6]	C	T	1.548e^-4	0.482	INTRON betaTub97EF
3L	1601637	3L_1601637_SNP [dm3] 3L_1601637_SNP [dm6]	C	T	1.551e^-4	0.482	SYNONYMOUS_CODING CG12104 DOWNSTREAM CG13917	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18599796	3R_18599796_SNP [dm3] 3R_22774074_SNP [dm6]	T	A	1.554e^-4	0.482	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
X	17179052	X_17179052_SNP [dm3] X_17285019_SNP [dm6]	T	C	1.560e^-4	0.482	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	4208073	2L_4208073_SNP [dm3] 2L_4208073_SNP [dm6]	G	A	1.562e^-4	0.482	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15483753	3R_15483753_SNP [dm3] 3R_19658031_SNP [dm6]	C	T	1.564e^-4	0.482	UPSTREAM CG6184 INTERGENIC
3R	12718931	3R_12718931_SNP [dm3] 3R_16893209_SNP [dm6]	T	G	1.565e^-4	0.482	INTRON iab-8 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	3473909	X_3473909_SNP [dm3] X_3579876_SNP [dm6]	G	A	1.569e^-4	0.482	INTRON AstA-R1
3L	3565446	3L_3565446_DEL [dm3] 3L_3565446_DEL [dm6]	CGC	C	1.571e^-4	0.482	INTRON Eip63E
3R	20608189	3R_20608189_SNP [dm3] 3R_24782467_SNP [dm6]	C	T	1.575e^-4	0.482	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
3R	4947847	3R_4947847_SNP [dm3] 3R_9122125_SNP [dm6]	A	G	1.578e^-4	0.482	INTRON pum
3L	12107229	3L_12107229_SNP [dm3] 3L_12114129_SNP [dm6]	A	T	1.578e^-4	0.482	INTERGENIC
3R	10577586	3R_10577586_SNP [dm3] 3R_14751864_SNP [dm6]	C	T	1.579e^-4	0.482	UTR_3_PRIME CG7362 UPSTREAM smp-30 INTRON jvl
X	17577462	X_17577462_DEL [dm3] X_17683429_DEL [dm6]	CAC	C	1.583e^-4	0.482	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9414765	2L_9414765_SNP [dm3] 2L_9414765_SNP [dm6]	C	T	1.589e^-4	0.482	INTRON Shawl
3L	1898675	3L_1898675_INS [dm3] 3L_1898675_INS [dm6]	A	ATA	1.591e^-4	0.482	INTRON CG1887	TF binding site mE1_TFBS_inv
3R	21616992	3R_21616992_SNP [dm3] 3R_25791270_SNP [dm6]	A	C	1.598e^-4	0.482	UPSTREAM CG31093 DOWNSTREAM CR43631 INTERGENIC
X	20466091	X_20466091_SNP [dm3] X_20595064_SNP [dm6]	A	G	1.599e^-4	0.482	INTRON RunxA
3L	10503056	3L_10503056_INS [dm3] 3L_10509956_INS [dm6]	C	CC	1.602e^-4	0.482	INTRON A2bp1
X	4595454	X_4595454_INS [dm3] X_4701421_INS [dm6]	A	ATA	1.602e^-4	0.482	UTR_3_PRIME ctp UPSTREAM l_1_G0334	TF binding site BDTNP1_TFBS_dl
3R	8231331	3R_8231331_SNP [dm3] 3R_12405609_SNP [dm6]	C	T	1.603e^-4	0.482	UPSTREAM CG5167 INTRON Cyp9f2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18406458	3L_18406458_SNP [dm3] 3L_18413358_SNP [dm6]	T	C	1.605e^-4	0.482	INTERGENIC
3L	4364457	3L_4364457_SNP [dm3] 3L_4364457_SNP [dm6]	A	T	1.607e^-4	0.482	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18063966	X_18063966_DEL [dm3] X_18169933_DEL [dm6]	AGCTA	T	1.616e^-4	0.482	INTRON Frq1
3L	13295126	3L_13295126_SNP [dm3] 3L_13302026_SNP [dm6]	C	G	1.618e^-4	0.482	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
2L	9412174	2L_9412174_SNP [dm3] 2L_9412174_SNP [dm6]	A	G	1.620e^-4	0.482	INTRON Shawl
3R	26526348	3R_26526348_SNP [dm3] 3R_30700626_SNP [dm6]	C	T	1.624e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4171242	2R_4171242_SNP [dm3] 2R_8283737_SNP [dm6]	G	A	1.631e^-4	0.482	INTERGENIC
2R	4038931	2R_4038931_SNP [dm3] 2R_8151426_SNP [dm6]	T	A	1.633e^-4	0.482	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	7583308	2R_7583308_SNP [dm3] 2R_11695803_SNP [dm6]	A	G	1.635e^-4	0.482	UTR_3_PRIME CG13197 DOWNSTREAM CG13197
3R	18651531	3R_18651531_SNP [dm3] 3R_22825809_SNP [dm6]	G	A	1.639e^-4	0.482	EXON CR44350
2R	9763734	2R_9763734_SNP [dm3] 2R_13876229_SNP [dm6]	A	G	1.641e^-4	0.482	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4210267	2L_4210267_SNP [dm3] 2L_4210267_SNP [dm6]	A	C	1.642e^-4	0.482	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17420377	2R_17420377_SNP [dm3] 2R_21532872_SNP [dm6]	A	C	1.644e^-4	0.482	UPSTREAM CR44725 INTRON Egfr
3L	23053326	3L_23053326_SNP [dm3] 3L_23060226_SNP [dm6]	C	A	1.653e^-4	0.482	INTERGENIC	transposable element FlyBase
2L	9753532	2L_9753532_SNP [dm3] 2L_9753532_SNP [dm6]	A	T	1.659e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_inv
X	6404285	X_6404285_SNP [dm3] X_6510252_SNP [dm6]	C	T	1.661e^-4	0.482	INTRON CG42340	TF binding site mE1_TFBS_inv
3R	9541233	3R_9541233_SNP [dm3] 3R_13715511_SNP [dm6]	G	A	1.663e^-4	0.482	UTR_5_PRIME CG34383	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24087735	3R_24087735_SNP [dm3] 3R_28262013_SNP [dm6]	G	C	1.664e^-4	0.482	DOWNSTREAM CG43125 INTERGENIC
3L	13353416	3L_13353416_SNP [dm3] 3L_13360316_SNP [dm6]	A	C	1.669e^-4	0.482	INTERGENIC
3R	16821068	3R_16821068_SNP [dm3] 3R_20995346_SNP [dm6]	A	C	1.671e^-4	0.482	INTRON Calx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8330183	3L_8330183_SNP [dm3] 3L_8337083_SNP [dm6]	A	C	1.671e^-4	0.482	INTRON Cpr66Cb
3L	17222263	3L_17222263_SNP [dm3] 3L_17229163_SNP [dm6]	C	T	1.671e^-4	0.482	INTRON Rbp6
3R	5148145	3R_5148145_SNP [dm3] 3R_9322423_SNP [dm6]	G	T	1.678e^-4	0.482	DOWNSTREAM HP1e INTRON CG8861
3R	27249859	3R_27249859_SNP [dm3] 3R_31424137_SNP [dm6]	G	A	1.683e^-4	0.482	INTRON Gprk2
2R	13859683	2R_13859683_SNP [dm3] 2R_17972178_SNP [dm6]	G	C	1.685e^-4	0.482	INTERGENIC
3L	2377912	3L_2377912_SNP [dm3] 3L_2377912_SNP [dm6]	C	T	1.686e^-4	0.482	UTR_5_PRIME CG45186 UPSTREAM CG15877 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11184544	3R_11184544_SNP [dm3] 3R_15358822_SNP [dm6]	T	C	1.688e^-4	0.482	UTR_3_PRIME ldlCp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9988006	2L_9988006_INS [dm3] 2L_9988006_INS [dm6]	T	TCA	1.689e^-4	0.482	INTRON bib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9414762	2L_9414762_SNP [dm3] 2L_9414762_SNP [dm6]	A	T	1.692e^-4	0.482	INTRON Shawl
3R	9223967	3R_9223967_SNP [dm3] 3R_13398245_SNP [dm6]	T	C	1.694e^-4	0.482	UTR_3_PRIME CG14377 DOWNSTREAM CG9796 & 1 other
3L	17618520	3L_17618520_SNP [dm3] 3L_17625420_SNP [dm6]	T	C	1.696e^-4	0.482	INTRON CG7510	TF binding site mE1_TFBS_inv
3R	27063602	3R_27063602_SNP [dm3] 3R_31237880_SNP [dm6]	C	A	1.698e^-4	0.482	INTRON qless
3L	22183324	3L_22183324_SNP [dm3] 3L_22190224_SNP [dm6]	C	T	1.700e^-4	0.482	INTRON olf413
2L	10716759	2L_10716759_SNP [dm3] 2L_10716759_SNP [dm6]	T	C	1.700e^-4	0.482	INTERGENIC
3R	7874708	3R_7874708_SNP [dm3] 3R_12048986_SNP [dm6]	T	C	1.706e^-4	0.482	UTR_5_PRIME CG14739	TF binding site mE1_TFBS_cad
3L	7590631	3L_7590631_SNP [dm3] 3L_7597531_SNP [dm6]	A	G	1.712e^-4	0.482	INTRON CG33275
2L	3015698	2L_3015698_SNP [dm3] 2L_3015698_SNP [dm6]	T	A	1.715e^-4	0.482	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi
3L	4364482	3L_4364482_SNP [dm3] 3L_4364482_SNP [dm6]	A	T	1.717e^-4	0.482	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5250461	3L_5250461_DEL [dm3] 3L_5257361_DEL [dm6]	TA	T	1.719e^-4	0.482	INTRON shep
3R	21439239	3R_21439239_SNP [dm3] 3R_25613517_SNP [dm6]	A	G	1.719e^-4	0.482	UPSTREAM CG5079 INTRON Npl4
2R	16905178	2R_16905178_SNP [dm3] 2R_21017673_SNP [dm6]	A	C	1.720e^-4	0.482	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	16905181	2R_16905181_SNP [dm3] 2R_21017676_SNP [dm6]	A	C	1.720e^-4	0.482	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	13081752	2L_13081752_SNP [dm3] 2L_13081752_SNP [dm6]	C	T	1.722e^-4	0.482	INTERGENIC
2R	13912304	2R_13912304_SNP [dm3] 2R_18024799_SNP [dm6]	A	G	1.725e^-4	0.482	INTERGENIC
2R	16905177	2R_16905177_SNP [dm3] 2R_21017672_SNP [dm6]	C	A	1.733e^-4	0.482	UPSTREAM RIC-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	26637246	3R_26637246_SNP [dm3] 3R_30811524_SNP [dm6]	G	C	1.735e^-4	0.482	INTRON cindr
X	11452096	X_11452096_SNP [dm3] X_11558063_SNP [dm6]	C	A	1.736e^-4	0.482	INTRON CG1572
2L	9354195	2L_9354195_DEL [dm3] 2L_9354195_DEL [dm6]	AACAGTTGTTTTCAGACTCT...	A	1.738e^-4	0.482	INTERGENIC
3R	11527475	3R_11527475_SNP [dm3] 3R_15701753_SNP [dm6]	C	G	1.740e^-4	0.482	INTERGENIC
3L	4364357	3L_4364357_SNP [dm3] 3L_4364357_SNP [dm6]	T	A	1.741e^-4	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14324705	X_14324705_SNP [dm3] X_14430672_SNP [dm6]	A	G	1.742e^-4	0.482	INTRON dpr8
3L	5522754	3L_5522754_SNP [dm3] 3L_5529654_SNP [dm6]	C	T	1.744e^-4	0.482	UPSTREAM Lkr INTERGENIC
3R	18636355	3R_18636355_SNP [dm3] 3R_22810633_SNP [dm6]	T	G	1.744e^-4	0.482	INTERGENIC
2R	8631241	2R_8631241_SNP [dm3] 2R_12743736_SNP [dm6]	C	T	1.745e^-4	0.482	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18503431	3R_18503431_SNP [dm3] 3R_22677709_SNP [dm6]	G	C	1.747e^-4	0.482	INTRON CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9928229	3R_9928229_SNP [dm3] 3R_14102507_SNP [dm6]	A	G	1.749e^-4	0.482	SYNONYMOUS_CODING PK1-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9320114	3R_9320114_SNP [dm3] 3R_13494392_SNP [dm6]	G	C	1.755e^-4	0.482	INTERGENIC
3R	26871478	3R_26871478_SNP [dm3] 3R_31045756_SNP [dm6]	T	G	1.758e^-4	0.482	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
3R	14015256	3R_14015256_SNP [dm3] 3R_18189534_SNP [dm6]	T	C	1.761e^-4	0.482	SYNONYMOUS_CODING MED17 UPSTREAM CG12321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14898280	2R_14898280_SNP [dm3] 2R_19010775_SNP [dm6]	C	T	1.761e^-4	0.482	INTERGENIC
2L	9409341	2L_9409341_SNP [dm3] 2L_9409341_SNP [dm6]	A	C	1.765e^-4	0.482	INTRON Shawl
3L	21226834	3L_21226834_SNP [dm3] 3L_21233734_SNP [dm6]	C	T	1.766e^-4	0.482	INTRON Eip78C
3R	13521335	3R_13521335_DEL [dm3] 3R_17695613_DEL [dm6]	CA	G	1.767e^-4	0.482	INTRON osa
X	21057760	X_21057760_SNP [dm3] X_21186733_SNP [dm6]	G	T	1.768e^-4	0.482	INTERGENIC
X	11517513	X_11517513_SNP [dm3] X_11623480_SNP [dm6]	G	A	1.773e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7450251	3R_7450251_SNP [dm3] 3R_11624529_SNP [dm6]	C	A	1.776e^-4	0.482	UTR_5_PRIME CG6808 DOWNSTREAM CG6813 INTRON CG14711
2L	7558131	2L_7558131_SNP [dm3] 2L_7558131_SNP [dm6]	G	C	1.776e^-4	0.482	INTRON RapGAP1
2L	8175428	2L_8175428_DEL [dm3] 2L_8175428_DEL [dm6]	TT	T	1.778e^-4	0.482	INTRON Piezo
X	18064878	X_18064878_SNP [dm3] X_18170845_SNP [dm6]	A	G	1.781e^-4	0.482	UTR_3_PRIME Frq1
3R	10577560	3R_10577560_SNP [dm3] 3R_14751838_SNP [dm6]	T	C	1.789e^-4	0.482	UTR_3_PRIME CG7362 UPSTREAM smp-30 INTRON jvl
2R	19483432	2R_19483432_SNP [dm3] 2R_23595909_SNP [dm6]	A	G	1.789e^-4	0.482	UPSTREAM apt INTRON apt
3L	10610754	3L_10610754_SNP [dm3] 3L_10617654_SNP [dm6]	A	C	1.791e^-4	0.482	INTERGENIC
3L	18538126	3L_18538126_SNP [dm3] 3L_18545026_SNP [dm6]	G	A	1.801e^-4	0.482	INTERGENIC
3R	11184990	3R_11184990_SNP [dm3] 3R_15359268_SNP [dm6]	G	A	1.805e^-4	0.482	UTR_3_PRIME ldlCp DOWNSTREAM CG5044	TF binding site mE1_TFBS_inv
2R	13473599	2R_13473599_SNP [dm3] 2R_17586094_SNP [dm6]	A	C	1.806e^-4	0.482	UTR_5_PRIME CG14483 DOWNSTREAM RhoGAP54D INTRON CG14483 EXON CR45275	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6589450	3R_6589450_SNP [dm3] 3R_10763728_SNP [dm6]	G	C	1.808e^-4	0.482	NON_SYNONYMOUS_CODING Cap-H2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14709225	X_14709225_SNP [dm3] X_14815192_SNP [dm6]	T	C	1.809e^-4	0.482	INTRON rut
3R	13564907	3R_13564907_SNP [dm3] 3R_17739185_SNP [dm6]	G	A	1.813e^-4	0.482	UPSTREAM TyrRII INTRON TyrRII
2L	21901015	2L_21901015_SNP [dm3] 2L_21901015_SNP [dm6]	C	G	1.814e^-4	0.482	INTERGENIC
3R	9734074	3R_9734074_SNP [dm3] 3R_13908352_SNP [dm6]	C	T	1.814e^-4	0.482	INTERGENIC
X	7082163	X_7082163_DEL [dm3] X_7188130_DEL [dm6]	AA	A	1.817e^-4	0.482	INTRON CG9650 & 1 other
2R	7261978	2R_7261978_SNP [dm3] 2R_11374473_SNP [dm6]	A	T	1.818e^-4	0.482	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
X	17206158	X_17206158_SNP [dm3] X_17312125_SNP [dm6]	G	A	1.820e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	797296	3L_797296_SNP [dm3] 3L_797296_SNP [dm6]	C	A	1.822e^-4	0.482	INTERGENIC
3R	4611315	3R_4611315_SNP [dm3] 3R_8785593_SNP [dm6]	G	A	1.826e^-4	0.482	INTRON Pif1B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	5524258	3L_5524258_SNP [dm3] 3L_5531158_SNP [dm6]	G	A	1.830e^-4	0.482	INTERGENIC
3L	20607100	3L_20607100_SNP [dm3] 3L_20614000_SNP [dm6]	C	T	1.833e^-4	0.482	INTRON knrl
3R	13427407	3R_13427407_SNP [dm3] 3R_17601685_SNP [dm6]	T	C	1.840e^-4	0.482	INTERGENIC
2R	4663378	2R_4663378_SNP [dm3] 2R_8775873_SNP [dm6]	C	T	1.845e^-4	0.482	INTERGENIC
3R	22115501	3R_22115501_SNP [dm3] 3R_26289779_SNP [dm6]	G	A	1.846e^-4	0.482	INTERGENIC
2L	855323	2L_855323_SNP [dm3] 2L_855323_SNP [dm6]	G	A	1.846e^-4	0.482	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17776118	3R_17776118_DEL [dm3] 3R_21950396_DEL [dm6]	GG	G	1.856e^-4	0.482	INTRON Eip93F	TF binding site mE1_TFBS_zfh1
2L	9354339	2L_9354339_SNP [dm3] 2L_9354339_SNP [dm6]	A	G	1.860e^-4	0.482	INTERGENIC
3L	14272370	3L_14272370_INS [dm3] 3L_14279270_INS [dm6]	T	TT	1.861e^-4	0.482	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
X	14942612	X_14942612_SNP [dm3] X_15048579_SNP [dm6]	C	T	1.862e^-4	0.482	UPSTREAM CG5541 INTRON hiw & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv transposable element FlyBase
3L	18200727	3L_18200727_SNP [dm3] 3L_18207627_SNP [dm6]	G	A	1.862e^-4	0.482	INTERGENIC
2R	14285502	2R_14285502_SNP [dm3] 2R_18397997_SNP [dm6]	G	A	1.864e^-4	0.482	UPSTREAM GstE1 & 1 other INTRON GstE10
X	21053662	X_21053662_SNP [dm3] X_21182635_SNP [dm6]	C	T	1.864e^-4	0.482	INTERGENIC
3R	26238253	3R_26238253_SNP [dm3] 3R_30412531_SNP [dm6]	G	T	1.864e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10303208	3R_10303208_SNP [dm3] 3R_14477486_SNP [dm6]	G	A	1.865e^-4	0.482	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	18651305	3R_18651305_SNP [dm3] 3R_22825583_SNP [dm6]	C	A	1.871e^-4	0.482	EXON CR44350
X	11517045	X_11517045_DEL [dm3] X_11623012_DEL [dm6]	ATA	A	1.872e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	9021059	3R_9021059_SNP [dm3] 3R_13195337_SNP [dm6]	T	C	1.876e^-4	0.482	INTERGENIC
2L	9724443	2L_9724443_SNP [dm3] 2L_9724443_SNP [dm6]	A	G	1.879e^-4	0.482	INTRON Nckx30C
2L	16447964	2L_16447964_SNP [dm3] 2L_16447964_SNP [dm6]	A	G	1.879e^-4	0.482	INTRON CG5888 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	20173385	2R_20173385_SNP [dm3] 2R_24285862_SNP [dm6]	A	C	1.881e^-4	0.482	INTRON nvy	TF binding site mE1_TFBS_chinmo
3R	23672880	3R_23672880_INS [dm3] 3R_27847158_INS [dm6]	A	ACATAGATATA...	1.885e^-4	0.482	INTRON CG34353 & 1 other
3L	4614070	3L_4614070_SNP [dm3] 3L_4614070_SNP [dm6]	G	A	1.887e^-4	0.482	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	4662639	2R_4662639_SNP [dm3] 2R_8775134_SNP [dm6]	A	T	1.887e^-4	0.482	INTERGENIC
3L	4364429	3L_4364429_SNP [dm3] 3L_4364429_SNP [dm6]	A	G	1.887e^-4	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5087174	3R_5087174_SNP [dm3] 3R_9261452_SNP [dm6]	C	G	1.888e^-4	0.482	INTRON VhaM8.9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15855189	2R_15855189_SNP [dm3] 2R_19967684_SNP [dm6]	G	A	1.888e^-4	0.482	INTERGENIC
2R	13859678	2R_13859678_SNP [dm3] 2R_17972173_SNP [dm6]	A	C	1.889e^-4	0.482	INTERGENIC
3R	2681236	3R_2681236_SNP [dm3] 3R_6855514_SNP [dm6]	C	G	1.891e^-4	0.482	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	9540284	3R_9540284_SNP [dm3] 3R_13714562_SNP [dm6]	C	G	1.893e^-4	0.482	UPSTREAM CR34044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	12956312	3L_12956312_SNP [dm3] 3L_12963212_SNP [dm6]	T	C	1.894e^-4	0.482	INTERGENIC
3L	4364355	3L_4364355_SNP [dm3] 3L_4364355_SNP [dm6]	C	G	1.897e^-4	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11517503	X_11517503_SNP [dm3] X_11623470_SNP [dm6]	T	C	1.898e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9223956	3R_9223956_SNP [dm3] 3R_13398234_SNP [dm6]	C	T	1.901e^-4	0.482	UTR_3_PRIME CG14377 DOWNSTREAM CG9796 & 1 other
3R	25520082	3R_25520082_SNP [dm3] 3R_29694360_SNP [dm6]	G	C	1.906e^-4	0.482	INTRON dmrt99B
3L	10247208	3L_10247208_SNP [dm3] 3L_10254108_SNP [dm6]	G	A	1.906e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17866509	2R_17866509_SNP [dm3] 2R_21979004_SNP [dm6]	C	T	1.907e^-4	0.482	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
2L	9354302	2L_9354302_SNP [dm3] 2L_9354302_SNP [dm6]	C	T	1.915e^-4	0.482	INTERGENIC
3R	26492604	3R_26492604_SNP [dm3] 3R_30666882_SNP [dm6]	C	A	1.915e^-4	0.482	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	9522523	3L_9522523_SNP [dm3] 3L_9529423_SNP [dm6]	A	G	1.918e^-4	0.482	INTRON Or67a
3R	22115427	3R_22115427_SNP [dm3] 3R_26289705_SNP [dm6]	G	A	1.918e^-4	0.482	INTERGENIC
2L	4911560	2L_4911560_SNP [dm3] 2L_4911560_SNP [dm6]	C	T	1.918e^-4	0.482	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21053840	X_21053840_SNP [dm3] X_21182813_SNP [dm6]	G	T	1.924e^-4	0.482	INTERGENIC
X	18965541	X_18965541_SNP [dm3] X_19071508_SNP [dm6]	G	C	1.926e^-4	0.482	INTERGENIC
2R	12601160	2R_12601160_DEL [dm3] 2R_16713655_DEL [dm6]	AA	A	1.928e^-4	0.482	INTRON CG30463
3R	12230165	3R_12230165_SNP [dm3] 3R_16404443_SNP [dm6]	T	C	1.930e^-4	0.482	UPSTREAM ss INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15052086	2R_15052086_SNP [dm3] 2R_19164581_SNP [dm6]	T	C	1.934e^-4	0.482	DOWNSTREAM ena INTRON CG10737	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	8628636	X_8628636_SNP [dm3] X_8734603_SNP [dm6]	G	A	1.938e^-4	0.482	INTERGENIC
2L	3009361	2L_3009361_SNP [dm3] 2L_3009361_SNP [dm6]	G	A	1.938e^-4	0.482	INTRON CG17265	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	19595432	2R_19595432_SNP [dm3] 2R_23707909_SNP [dm6]	C	T	1.940e^-4	0.482	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13295352	3L_13295352_SNP [dm3] 3L_13302252_SNP [dm6]	T	A	1.941e^-4	0.482	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
3R	9320040	3R_9320040_SNP [dm3] 3R_13494318_SNP [dm6]	G	A	1.946e^-4	0.482	INTERGENIC
3R	11590987	3R_11590987_SNP [dm3] 3R_15765265_SNP [dm6]	T	G	1.955e^-4	0.482	DOWNSTREAM CG5623 INTERGENIC
3R	16311942	3R_16311942_SNP [dm3] 3R_20486220_SNP [dm6]	G	A	1.956e^-4	0.482	DOWNSTREAM CR44400 EXON CR44401
2R	13930690	2R_13930690_SNP [dm3] 2R_18043185_SNP [dm6]	C	T	1.964e^-4	0.482	SYNONYMOUS_CODING CG5773 DOWNSTREAM CG5770
X	21057868	X_21057868_SNP [dm3] X_21186841_SNP [dm6]	A	G	1.965e^-4	0.482	INTERGENIC
3L	15284790	3L_15284790_SNP [dm3] 3L_15291690_SNP [dm6]	T	C	1.966e^-4	0.482	INTERGENIC
X	21053826	X_21053826_SNP [dm3] X_21182799_SNP [dm6]	G	A	1.967e^-4	0.482	INTERGENIC
3R	12230120	3R_12230120_SNP [dm3] 3R_16404398_SNP [dm6]	C	T	1.974e^-4	0.482	UPSTREAM ss INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4364342	3L_4364342_SNP [dm3] 3L_4364342_SNP [dm6]	T	C	1.976e^-4	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18617606	2R_18617606_SNP [dm3] 2R_22730101_SNP [dm6]	G	A	1.980e^-4	0.482	SYNONYMOUS_CODING jbug UPSTREAM jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17353204	2R_17353204_SNP [dm3] 2R_21465699_SNP [dm6]	T	C	1.980e^-4	0.482	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21717966	3R_21717966_SNP [dm3] 3R_25892244_SNP [dm6]	A	T	1.981e^-4	0.482	INTRON Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19238592	3R_19238592_SNP [dm3] 3R_23412870_SNP [dm6]	G	A	1.986e^-4	0.482	INTRON CG4374
3R	26073297	3R_26073297_SNP [dm3] 3R_30247575_SNP [dm6]	G	T	1.987e^-4	0.482	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	11721173	3R_11721173_SNP [dm3] 3R_15895451_SNP [dm6]	T	A	1.989e^-4	0.482	INTRON CG14877
X	11517541	X_11517541_SNP [dm3] X_11623508_SNP [dm6]	C	A	1.995e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5968469	2L_5968469_SNP [dm3] 2L_5968469_SNP [dm6]	G	A	2.001e^-4	0.482	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9749408	3L_9749408_SNP [dm3] 3L_9756308_SNP [dm6]	C	T	2.003e^-4	0.482	INTRON CG42268
3R	4014324	3R_4014324_INS [dm3] 3R_8188602_INS [dm6]	A	ACATTTAAACTGAACAACAT...	2.004e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5181948	3R_5181948_SNP [dm3] 3R_9356226_SNP [dm6]	A	T	2.006e^-4	0.482	NON_SYNONYMOUS_CODING CG43675 UTR_5_PRIME CG45050 DOWNSTREAM snoRNA:Me18S-G1358b INTRON CG45050
3L	12281684	3L_12281684_SNP [dm3] 3L_12288584_SNP [dm6]	T	A	2.009e^-4	0.482	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19227533	3R_19227533_SNP [dm3] 3R_23401811_SNP [dm6]	C	T	2.012e^-4	0.482	UPSTREAM Ir94d DOWNSTREAM CG17380 INTERGENIC
X	11661144	X_11661144_DEL [dm3] X_11767111_DEL [dm6]	TTCGT	GGAC	2.014e^-4	0.482	INTRON m	TF binding site mE1_TFBS_chinmo
2L	5261906	2L_5261906_INS [dm3] 2L_5261906_INS [dm6]	T	TGAAT	2.016e^-4	0.482	INTRON tkv	TF binding site BDTNP1_TFBS_twi
2L	10963681	2L_10963681_SNP [dm3] 2L_10963681_SNP [dm6]	G	T	2.017e^-4	0.482	UTR_5_PRIME dpr2 INTRON dpr2
X	11240349	X_11240349_SNP [dm3] X_11346316_SNP [dm6]	A	G	2.021e^-4	0.482	SYNONYMOUS_CODING CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17050365	2L_17050365_SNP [dm3] 2L_17050365_SNP [dm6]	G	A	2.022e^-4	0.482	INTERGENIC
2R	13859662	2R_13859662_SNP [dm3] 2R_17972157_SNP [dm6]	C	A	2.023e^-4	0.482	INTERGENIC
2R	13859761	2R_13859761_SNP [dm3] 2R_17972256_SNP [dm6]	C	A	2.023e^-4	0.482	INTERGENIC
2R	7276983	2R_7276983_SNP [dm3] 2R_11389478_SNP [dm6]	T	C	2.029e^-4	0.482	UPSTREAM CG30022 INTRON sprt
3R	7700526	3R_7700526_SNP [dm3] 3R_11874804_SNP [dm6]	G	T	2.030e^-4	0.482	INTERGENIC
2L	18513364	2L_18513364_SNP [dm3] 2L_18513364_SNP [dm6]	C	A	2.034e^-4	0.482	UTR_3_PRIME CG10178
3R	13489040	3R_13489040_SNP [dm3] 3R_17663318_SNP [dm6]	C	T	2.038e^-4	0.482	NON_SYNONYMOUS_CODING CG14322
3L	14183510	3L_14183510_SNP [dm3] 3L_14190410_SNP [dm6]	C	T	2.039e^-4	0.482	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8930464	2R_8930464_SNP [dm3] 2R_13042959_SNP [dm6]	A	T	2.043e^-4	0.482	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2365799	3L_2365799_DEL [dm3] 3L_2365799_DEL [dm6]	TT	T	2.047e^-4	0.482	INTERGENIC
3R	24249117	3R_24249117_SNP [dm3] 3R_28423395_SNP [dm6]	A	G	2.048e^-4	0.482	INTRON beat-VI
3R	9197600	3R_9197600_SNP [dm3] 3R_13371878_SNP [dm6]	A	G	2.049e^-4	0.482	UTR_5_PRIME Lip3 UPSTREAM CG34309
2L	2919341	2L_2919341_SNP [dm3] 2L_2919341_SNP [dm6]	G	T	2.049e^-4	0.482	INTRON lilli
3R	26417656	3R_26417656_SNP [dm3] 3R_30591934_SNP [dm6]	A	G	2.059e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13614379	2R_13614379_SNP [dm3] 2R_17726874_SNP [dm6]	T	C	2.062e^-4	0.482	UPSTREAM CG4975 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	9886639	3R_9886639_DEL [dm3] 3R_14060917_DEL [dm6]	AA	T	2.063e^-4	0.482	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	7880592	3R_7880592_SNP [dm3] 3R_12054870_SNP [dm6]	A	C	2.067e^-4	0.482	INTERGENIC
2R	18060648	2R_18060648_SNP [dm3] 2R_22173143_SNP [dm6]	G	A	2.072e^-4	0.482	SYNONYMOUS_CODING CG3045 DOWNSTREAM a
2R	18061066	2R_18061066_SNP [dm3] 2R_22173561_SNP [dm6]	T	G	2.072e^-4	0.482	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2R	18061102	2R_18061102_SNP [dm3] 2R_22173597_SNP [dm6]	A	G	2.072e^-4	0.482	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
3L	4449302	3L_4449302_SNP [dm3] 3L_4449302_SNP [dm6]	A	T	2.072e^-4	0.482	INTERGENIC
X	2701862	X_2701862_SNP [dm3] X_2807829_SNP [dm6]	T	A	2.078e^-4	0.482	INTRON kirre
2L	9753574	2L_9753574_SNP [dm3] 2L_9753574_SNP [dm6]	A	G	2.081e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26418642	3R_26418642_SNP [dm3] 3R_30592920_SNP [dm6]	G	C	2.084e^-4	0.482	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15007875	2L_15007875_INS [dm3] 2L_15007875_INS [dm6]	T	TGCT	2.089e^-4	0.482	UTR_5_PRIME NC2beta UPSTREAM l_2_35Be DOWNSTREAM l_2_35Bc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11517507	X_11517507_SNP [dm3] X_11623474_SNP [dm6]	A	G	2.090e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23514236	3R_23514236_SNP [dm3] 3R_27688514_SNP [dm6]	G	A	2.091e^-4	0.482	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	17004083	2L_17004083_SNP [dm3] 2L_17004083_SNP [dm6]	C	G	2.098e^-4	0.482	INTERGENIC
3R	16310187	3R_16310187_SNP [dm3] 3R_20484465_SNP [dm6]	T	A	2.100e^-4	0.482	START_GAINED Gfrl UTR_5_PRIME Gfrl UPSTREAM CR44400
2R	17866493	2R_17866493_SNP [dm3] 2R_21978988_SNP [dm6]	G	A	2.105e^-4	0.482	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
2R	3743581	2R_3743581_SNP [dm3] 2R_7856076_SNP [dm6]	C	T	2.109e^-4	0.482	INTRON Dgk
2L	9354177	2L_9354177_SNP [dm3] 2L_9354177_SNP [dm6]	C	A	2.111e^-4	0.482	INTERGENIC
3R	9341846	3R_9341846_SNP [dm3] 3R_13516124_SNP [dm6]	G	A	2.113e^-4	0.482	INTERGENIC
2L	15457830	2L_15457830_SNP [dm3] 2L_15457830_SNP [dm6]	C	A	2.115e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	6579767	2R_6579767_SNP [dm3] 2R_10692262_SNP [dm6]	A	G	2.122e^-4	0.482	INTRON stan	enhancer mE1_CBP_Enhancers
X	11821579	X_11821579_SNP [dm3] X_11927546_SNP [dm6]	A	C	2.128e^-4	0.482	NON_SYNONYMOUS_CODING CG10362
3R	9261849	3R_9261849_SNP [dm3] 3R_13436127_SNP [dm6]	A	G	2.131e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_sens
3R	2970023	3R_2970023_INS [dm3] 3R_7144301_INS [dm6]	C	CATAGGC	2.131e^-4	0.482	UPSTREAM CG2656 & 1 other DOWNSTREAM CR42738 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9445035	2R_9445035_SNP [dm3] 2R_13557530_SNP [dm6]	A	C	2.132e^-4	0.482	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22115351	3R_22115351_SNP [dm3] 3R_26289629_SNP [dm6]	C	G	2.133e^-4	0.482	INTERGENIC
2R	18545108	2R_18545108_SNP [dm3] 2R_22657603_SNP [dm6]	C	T	2.135e^-4	0.482	UPSTREAM CG13510 & 4 others INTERGENIC
3R	21866261	3R_21866261_SNP [dm3] 3R_26040539_SNP [dm6]	T	C	2.138e^-4	0.482	SYNONYMOUS_CODING E_spl_m8-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	20309987	2R_20309987_SNP [dm3] 2R_24422464_SNP [dm6]	G	A	2.138e^-4	0.482	INTRON prom	TF binding site mE1_TFBS_chinmo
3L	5523068	3L_5523068_SNP [dm3] 3L_5529968_SNP [dm6]	T	C	2.141e^-4	0.482	UPSTREAM Lkr INTERGENIC
3L	6341667	3L_6341667_SNP [dm3] 3L_6348567_SNP [dm6]	G	A	2.146e^-4	0.482	INTRON CG13300
3R	14032944	3R_14032944_SNP [dm3] 3R_18207222_SNP [dm6]	T	C	2.147e^-4	0.482	INTRON CG7985
2L	12622074	2L_12622074_SNP [dm3] 2L_12622074_SNP [dm6]	C	G	2.149e^-4	0.482	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22747012	3L_22747012_SNP [dm3] 3L_22753912_SNP [dm6]	T	G	2.151e^-4	0.482	INTRON SPoCk
2L	10680827	2L_10680827_SNP [dm3] 2L_10680827_SNP [dm6]	A	G	2.151e^-4	0.482	UPSTREAM CG17105 & 1 other INTERGENIC
3R	18858982	3R_18858982_SNP [dm3] 3R_23033260_SNP [dm6]	C	G	2.152e^-4	0.482	DOWNSTREAM CG13833 INTERGENIC
3L	4364465	3L_4364465_INS [dm3] 3L_4364465_INS [dm6]	A	AAAC	2.152e^-4	0.482	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5422883	3R_5422883_SNP [dm3] 3R_9597161_SNP [dm6]	G	A	2.152e^-4	0.482	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7275298	2R_7275298_SNP [dm3] 2R_11387793_SNP [dm6]	A	C	2.153e^-4	0.482	NON_SYNONYMOUS_CODING CG30022 INTRON sprt
3R	9047412	3R_9047412_SNP [dm3] 3R_13221690_SNP [dm6]	T	G	2.153e^-4	0.482	INTERGENIC
3L	23050175	3L_23050175_SNP [dm3] 3L_23057075_SNP [dm6]	T	A	2.153e^-4	0.482	INTERGENIC	transposable element FlyBase
3L	14503785	3L_14503785_SNP [dm3] 3L_14510685_SNP [dm6]	A	G	2.159e^-4	0.482	UPSTREAM bbg INTRON bbg
2R	19678452	2R_19678452_SNP [dm3] 2R_23790929_SNP [dm6]	A	G	2.159e^-4	0.482	SYNONYMOUS_CODING CG15800 INTRON CG9850
3L	5525270	3L_5525270_SNP [dm3] 3L_5532170_SNP [dm6]	G	A	2.162e^-4	0.482	INTERGENIC
2L	3834290	2L_3834290_SNP [dm3] 2L_3834290_SNP [dm6]	G	A	2.166e^-4	0.482	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	13429270	3R_13429270_SNP [dm3] 3R_17603548_SNP [dm6]	A	T	2.171e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16731319	3L_16731319_SNP [dm3] 3L_16738219_SNP [dm6]	G	T	2.173e^-4	0.482	INTRON CG9701	TF binding site mE1_TFBS_cad
3L	9724871	3L_9724871_SNP [dm3] 3L_9731771_SNP [dm6]	G	A	2.173e^-4	0.482	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17618529	3L_17618529_SNP [dm3] 3L_17625429_SNP [dm6]	G	A	2.175e^-4	0.482	INTRON CG7510	TF binding site mE1_TFBS_inv
3L	18478882	3L_18478882_SNP [dm3] 3L_18485782_SNP [dm6]	G	T	2.175e^-4	0.482	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	9298073	2L_9298073_SNP [dm3] 2L_9298073_SNP [dm6]	T	C	2.176e^-4	0.482	UTR_3_PRIME Ggamma30A
3R	6548161	3R_6548161_SNP [dm3] 3R_10722439_SNP [dm6]	C	A	2.177e^-4	0.482	INTERGENIC
2L	4209246	2L_4209246_SNP [dm3] 2L_4209246_SNP [dm6]	C	T	2.181e^-4	0.482	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	12315811	2R_12315811_DEL [dm3] 2R_16428306_DEL [dm6]	TTGT	T	2.181e^-4	0.482	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
X	11726045	X_11726045_SNP [dm3] X_11832012_SNP [dm6]	C	T	2.181e^-4	0.482	SYNONYMOUS_CODING rudhira INTRON rudhira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25923390	3R_25923390_SNP [dm3] 3R_30097668_SNP [dm6]	A	T	2.182e^-4	0.482	INTRON sima
3R	11768158	3R_11768158_SNP [dm3] 3R_15942436_SNP [dm6]	G	T	2.187e^-4	0.482	INTRON Sap47
3L	4859558	3L_4859558_SNP [dm3] 3L_4859558_SNP [dm6]	C	T	2.190e^-4	0.482	DOWNSTREAM CG32235 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	20044556	2L_20044556_DEL [dm3] 2L_20044556_DEL [dm6]	AACCA	A	2.192e^-4	0.482	INTRON sNPF
2L	20044563	2L_20044563_MNP [dm3] 2L_20044563_MNP [dm6]	TTTGCT	AAGAAA	2.192e^-4	0.482	INTRON sNPF
3R	22115091	3R_22115091_SNP [dm3] 3R_26289369_SNP [dm6]	C	T	2.197e^-4	0.482	INTERGENIC
3R	7866671	3R_7866671_SNP [dm3] 3R_12040949_SNP [dm6]	A	C	2.197e^-4	0.482	SPLICE_SITE_REGION CG14736 INTRON CG14736
3R	9461056	3R_9461056_SNP [dm3] 3R_13635334_SNP [dm6]	A	C	2.198e^-4	0.482	UTR_3_PRIME sqd DOWNSTREAM sqd & 1 other	TF binding site BDTNP1_TFBS_dl
3R	21174470	3R_21174470_SNP [dm3] 3R_25348748_SNP [dm6]	G	A	2.200e^-4	0.482	DOWNSTREAM Fur1 INTRON Fur1
2R	8897414	2R_8897414_SNP [dm3] 2R_13009909_SNP [dm6]	A	C	2.203e^-4	0.482	INTERGENIC
3R	22055909	3R_22055909_SNP [dm3] 3R_26230187_SNP [dm6]	T	G	2.203e^-4	0.482	UPSTREAM CG12290 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11274699	2L_11274699_SNP [dm3] 2L_11274699_SNP [dm6]	A	T	2.205e^-4	0.482	NON_SYNONYMOUS_CODING cana	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	11661441	X_11661441_SNP [dm3] X_11767408_SNP [dm6]	T	C	2.206e^-4	0.482	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
3R	13409894	3R_13409894_SNP [dm3] 3R_17584172_SNP [dm6]	C	A	2.207e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	9724176	2L_9724176_SNP [dm3] 2L_9724176_SNP [dm6]	A	G	2.208e^-4	0.482	INTRON Nckx30C
X	17206123	X_17206123_SNP [dm3] X_17312090_SNP [dm6]	T	C	2.209e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19727780	2R_19727780_SNP [dm3] 2R_23840257_SNP [dm6]	C	G	2.215e^-4	0.482	UPSTREAM CR44805 & 1 other DOWNSTREAM CG5549 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10892737	3L_10892737_SNP [dm3] 3L_10899637_SNP [dm6]	T	G	2.216e^-4	0.482	UPSTREAM Aps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	11015784	2R_11015784_DEL [dm3] 2R_15128279_DEL [dm6]	TG	T	2.219e^-4	0.482	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	10881684	3R_10881684_SNP [dm3] 3R_15055962_SNP [dm6]	A	T	2.220e^-4	0.482	UTR_3_PRIME dpr9 DOWNSTREAM dpr9
2L	4737934	2L_4737934_SNP [dm3] 2L_4737934_SNP [dm6]	T	A	2.220e^-4	0.482	INTRON CG15630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12857841	2L_12857841_SNP [dm3] 2L_12857841_SNP [dm6]	G	T	2.223e^-4	0.482	INTERGENIC
2R	4475377	2R_4475377_SNP [dm3] 2R_8587872_SNP [dm6]	C	T	2.225e^-4	0.482	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15686204	3L_15686204_SNP [dm3] 3L_15693104_SNP [dm6]	G	T	2.228e^-4	0.482	INTERGENIC	silencer mE1_HDAC_PRE
3R	9047411	3R_9047411_SNP [dm3] 3R_13221689_SNP [dm6]	T	A	2.229e^-4	0.482	INTERGENIC
3L	13731072	3L_13731072_SNP [dm3] 3L_13737972_SNP [dm6]	T	C	2.229e^-4	0.482	INTRON bru-3
3L	13369938	3L_13369938_SNP [dm3] 3L_13376838_SNP [dm6]	G	T	2.231e^-4	0.482	INTERGENIC
2L	9588207	2L_9588207_SNP [dm3] 2L_9588207_SNP [dm6]	G	A	2.233e^-4	0.482	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18060834	2R_18060834_SNP [dm3] 2R_22173329_SNP [dm6]	T	C	2.233e^-4	0.482	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
3R	8741121	3R_8741121_SNP [dm3] 3R_12915399_SNP [dm6]	T	A	2.236e^-4	0.482	UPSTREAM beat-Vb INTERGENIC
2L	4745529	2L_4745529_SNP [dm3] 2L_4745529_SNP [dm6]	G	A	2.244e^-4	0.482	INTRON CG15630
2L	4210071	2L_4210071_SNP [dm3] 2L_4210071_SNP [dm6]	C	G	2.244e^-4	0.482	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7383437	3R_7383437_DEL [dm3] 3R_11557715_DEL [dm6]	GG	T	2.245e^-4	0.482	UPSTREAM CG10898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	11517506	X_11517506_SNP [dm3] X_11623473_SNP [dm6]	A	T	2.247e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21571725	3R_21571725_SNP [dm3] 3R_25746003_SNP [dm6]	G	A	2.251e^-4	0.482	SYNONYMOUS_CODING LpR1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13736143	3L_13736143_SNP [dm3] 3L_13743043_SNP [dm6]	G	A	2.252e^-4	0.482	INTRON bru-3
3R	18806094	3R_18806094_SNP [dm3] 3R_22980372_SNP [dm6]	C	G	2.252e^-4	0.482	INTERGENIC
3R	9666776	3R_9666776_SNP [dm3] 3R_13841054_SNP [dm6]	G	A	2.254e^-4	0.482	INTERGENIC
3R	10420501	3R_10420501_SNP [dm3] 3R_14594779_SNP [dm6]	G	A	2.255e^-4	0.482	INTRON stumps	regulatory region REDfly_CRMs
3R	16317662	3R_16317662_SNP [dm3] 3R_20491940_SNP [dm6]	G	A	2.257e^-4	0.482	INTERGENIC
3R	25514121	3R_25514121_SNP [dm3] 3R_29688399_SNP [dm6]	C	T	2.258e^-4	0.482	INTRON Obp99c
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	2.262e^-4	0.482	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25770440	3R_25770440_SNP [dm3] 3R_29944718_SNP [dm6]	A	G	2.267e^-4	0.482	SYNONYMOUS_CODING CG15523
3R	26471353	3R_26471353_SNP [dm3] 3R_30645631_SNP [dm6]	A	C	2.269e^-4	0.482	DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	18651466	3R_18651466_SNP [dm3] 3R_22825744_SNP [dm6]	C	T	2.269e^-4	0.482	EXON CR44350
2L	17610902	2L_17610902_DEL [dm3] 2L_17610902_DEL [dm6]	GTCAGG	G	2.272e^-4	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4364358	3L_4364358_SNP [dm3] 3L_4364358_SNP [dm6]	T	A	2.272e^-4	0.482	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21172294	3R_21172294_SNP [dm3] 3R_25346572_SNP [dm6]	T	A	2.275e^-4	0.482	SYNONYMOUS_CODING tobi DOWNSTREAM Fur1	TF binding site mE1_TFBS_cad
3R	26657830	3R_26657830_SNP [dm3] 3R_30832108_SNP [dm6]	A	T	2.282e^-4	0.482	INTRON CG15544
X	16557758	X_16557758_DEL [dm3] X_16663725_DEL [dm6]	AATAC	G	2.291e^-4	0.482	INTRON r & 1 other	TF binding site mE1_TFBS_chinmo
3L	17618533	3L_17618533_SNP [dm3] 3L_17625433_SNP [dm6]	G	A	2.291e^-4	0.482	INTRON CG7510	TF binding site mE1_TFBS_inv
3L	5933868	3L_5933868_SNP [dm3] 3L_5940768_SNP [dm6]	A	G	2.292e^-4	0.482	INTRON CG33993
2L	20683308	2L_20683308_SNP [dm3] 2L_20683308_SNP [dm6]	G	A	2.293e^-4	0.482	UTR_3_PRIME CG2617 DOWNSTREAM Hr38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11517176	X_11517176_SNP [dm3] X_11623143_SNP [dm6]	T	C	2.294e^-4	0.482	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20838750	3R_20838750_SNP [dm3] 3R_25013028_SNP [dm6]	C	T	2.295e^-4	0.482	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10491583	2L_10491583_SNP [dm3] 2L_10491583_SNP [dm6]	A	G	2.296e^-4	0.482	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
2L	9414773	2L_9414773_SNP [dm3] 2L_9414773_SNP [dm6]	A	G	2.299e^-4	0.482	INTRON Shawl
3R	21434640	3R_21434640_SNP [dm3] 3R_25608918_SNP [dm6]	T	G	2.305e^-4	0.483	DOWNSTREAM msi INTRON ymp
3R	26871485	3R_26871485_SNP [dm3] 3R_31045763_SNP [dm6]	T	C	2.308e^-4	0.483	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
2L	9414774	2L_9414774_SNP [dm3] 2L_9414774_SNP [dm6]	C	T	2.308e^-4	0.483	INTRON Shawl
2L	10718876	2L_10718876_SNP [dm3] 2L_10718876_SNP [dm6]	A	G	2.314e^-4	0.483	INTERGENIC
2R	18866646	2R_18866646_SNP [dm3] 2R_22979123_SNP [dm6]	G	C	2.322e^-4	0.484	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5688365	3R_5688365_SNP [dm3] 3R_9862643_SNP [dm6]	A	G	2.324e^-4	0.484	INTRON Teh1
3R	14767230	3R_14767230_SNP [dm3] 3R_18941508_SNP [dm6]	A	G	2.326e^-4	0.484	INTRON CG42613
2R	9207206	2R_9207206_SNP [dm3] 2R_13319701_SNP [dm6]	A	C	2.327e^-4	0.484	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26174316	3R_26174316_SNP [dm3] 3R_30348594_SNP [dm6]	A	T	2.330e^-4	0.484	INTRON hdc
3L	12107232	3L_12107232_SNP [dm3] 3L_12114132_SNP [dm6]	G	C	2.331e^-4	0.484	INTERGENIC
X	16576931	X_16576931_SNP [dm3] X_16682898_SNP [dm6]	C	T	2.356e^-4	0.487	INTRON Axs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9588205	2L_9588205_SNP [dm3] 2L_9588205_SNP [dm6]	A	G	2.358e^-4	0.487	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20583919	3R_20583919_SNP [dm3] 3R_24758197_SNP [dm6]	C	T	2.363e^-4	0.487	SYNONYMOUS_CODING asp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
X	20720562	X_20720562_SNP [dm3] X_20849535_SNP [dm6]	G	T	2.363e^-4	0.487	INTRON shakB
2R	20509955	2R_20509955_SNP [dm3] 2R_24622432_SNP [dm6]	C	G	2.364e^-4	0.487	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11308843	3L_11308843_SNP [dm3] 3L_11315743_SNP [dm6]	C	G	2.364e^-4	0.487	EXON CR44361
3R	17771264	3R_17771264_SNP [dm3] 3R_21945542_SNP [dm6]	T	C	2.368e^-4	0.487	INTERGENIC
2R	15465256	2R_15465256_SNP [dm3] 2R_19577751_SNP [dm6]	C	T	2.373e^-4	0.487	INTRON sm
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	2.376e^-4	0.487	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11217178	3L_11217178_SNP [dm3] 3L_11224078_SNP [dm6]	T	C	2.376e^-4	0.487	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
2R	16293700	2R_16293700_SNP [dm3] 2R_20406195_SNP [dm6]	C	T	2.377e^-4	0.487	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22115024	3R_22115024_SNP [dm3] 3R_26289302_SNP [dm6]	G	A	2.379e^-4	0.487	INTERGENIC
2R	4060586	2R_4060586_SNP [dm3] 2R_8173081_SNP [dm6]	C	T	2.382e^-4	0.487	DOWNSTREAM Mlh1 INTRON CG14757
2L	4142015	2L_4142015_INS [dm3] 2L_4142015_INS [dm6]	G	GAGAAAAAG	2.383e^-4	0.487	INTERGENIC
3R	7379740	3R_7379740_SNP [dm3] 3R_11554018_SNP [dm6]	T	A	2.395e^-4	0.488	UPSTREAM CG14708 INTERGENIC
3R	17277343	3R_17277343_SNP [dm3] 3R_21451621_SNP [dm6]	T	C	2.398e^-4	0.488	INTERGENIC
3R	18679544	3R_18679544_SNP [dm3] 3R_22853822_SNP [dm6]	G	A	2.399e^-4	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10873083	3R_10873083_SNP [dm3] 3R_15047361_SNP [dm6]	C	A	2.400e^-4	0.488	INTERGENIC
3R	9621451	3R_9621451_INS [dm3] 3R_13795729_INS [dm6]	A	ATGTA	2.403e^-4	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14496740	3R_14496740_SNP [dm3] 3R_18671018_SNP [dm6]	G	C	2.408e^-4	0.488	UPSTREAM CG31230 INTRON CG7702	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6645771	3R_6645771_SNP [dm3] 3R_10820049_SNP [dm6]	A	G	2.408e^-4	0.488	INTERGENIC
3R	10219295	3R_10219295_SNP [dm3] 3R_14393573_SNP [dm6]	C	T	2.414e^-4	0.489	SYNONYMOUS_CODING cv-c
3L	10625062	3L_10625062_SNP [dm3] 3L_10631962_SNP [dm6]	T	C	2.415e^-4	0.489	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	4364539	3L_4364539_SNP [dm3] 3L_4364539_SNP [dm6]	A	G	2.420e^-4	0.489	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9903904	3R_9903904_SNP [dm3] 3R_14078182_SNP [dm6]	A	G	2.427e^-4	0.489	INTRON foxo
X	10079115	X_10079115_SNP [dm3] X_10185082_SNP [dm6]	G	T	2.427e^-4	0.489	INTRON CG43902 & 1 other
3R	12175310	3R_12175310_SNP [dm3] 3R_16349588_SNP [dm6]	G	T	2.433e^-4	0.489	NON_SYNONYMOUS_CODING Manf UPSTREAM CG14879	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17890074	2L_17890074_SNP [dm3] 2L_17890074_SNP [dm6]	C	T	2.435e^-4	0.489	INTERGENIC
3R	22115209	3R_22115209_SNP [dm3] 3R_26289487_SNP [dm6]	A	T	2.438e^-4	0.489	INTERGENIC
3R	7379741	3R_7379741_SNP [dm3] 3R_11554019_SNP [dm6]	A	T	2.439e^-4	0.489	UPSTREAM CG14708 INTERGENIC
2L	15075425	2L_15075425_SNP [dm3] 2L_15075425_SNP [dm6]	C	G	2.445e^-4	0.489	UTR_5_PRIME CG15270 INTRON CG15270
3L	5530474	3L_5530474_SNP [dm3] 3L_5537374_SNP [dm6]	C	T	2.448e^-4	0.489	INTERGENIC
3R	4162761	3R_4162761_SNP [dm3] 3R_8337039_SNP [dm6]	A	G	2.451e^-4	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10977570	2L_10977570_INS [dm3] 2L_10977570_INS [dm6]	A	TG	2.453e^-4	0.489	INTRON SCAR	TF binding site BDTNP1_TFBS_prd
3L	13838773	3L_13838773_SNP [dm3] 3L_13845673_SNP [dm6]	T	C	2.457e^-4	0.489	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	9754809	2L_9754809_SNP [dm3] 2L_9754809_SNP [dm6]	G	C	2.466e^-4	0.489	INTERGENIC
3L	10693519	3L_10693519_SNP [dm3] 3L_10700419_SNP [dm6]	A	T	2.470e^-4	0.489	INTERGENIC
X	17206053	X_17206053_SNP [dm3] X_17312020_SNP [dm6]	G	A	2.470e^-4	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7395671	3R_7395671_SNP [dm3] 3R_11569949_SNP [dm6]	T	A	2.471e^-4	0.489	INTRON Mrp4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5274279	3L_5274279_SNP [dm3] 3L_5281179_SNP [dm6]	G	T	2.473e^-4	0.489	INTERGENIC
3R	9226193	3R_9226193_SNP [dm3] 3R_13400471_SNP [dm6]	T	A	2.473e^-4	0.489	INTRON CG9796
3R	12702901	3R_12702901_SNP [dm3] 3R_16877179_SNP [dm6]	A	C	2.474e^-4	0.489	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27839905	3R_27839905_SNP [dm3] 3R_32014183_SNP [dm6]	A	T	2.476e^-4	0.489	DOWNSTREAM CR45556 INTRON heph
3R	12715590	3R_12715590_INS [dm3] 3R_16889868_INS [dm6]	A	AAAA	2.483e^-4	0.489	INTRON iab-8
3R	19238601	3R_19238601_SNP [dm3] 3R_23412879_SNP [dm6]	T	C	2.485e^-4	0.489	INTRON CG4374
3R	18526974	3R_18526974_SNP [dm3] 3R_22701252_SNP [dm6]	A	C	2.487e^-4	0.489	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
3R	7411451	3R_7411451_SNP [dm3] 3R_11585729_SNP [dm6]	C	A	2.487e^-4	0.489	UTR_3_PRIME CG6791 DOWNSTREAM wkd INTRON CG6791
3R	21496753	3R_21496753_SNP [dm3] 3R_25671031_SNP [dm6]	T	C	2.489e^-4	0.489	INTRON Lgr3
2L	8047957	2L_8047957_SNP [dm3] 2L_8047957_SNP [dm6]	G	A	2.491e^-4	0.489	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
3R	11700553	3R_11700553_SNP [dm3] 3R_15874831_SNP [dm6]	A	C	2.491e^-4	0.489	INTRON CG31183
3L	4364468	3L_4364468_SNP [dm3] 3L_4364468_SNP [dm6]	T	A	2.492e^-4	0.489	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10881862	3R_10881862_SNP [dm3] 3R_15056140_SNP [dm6]	C	T	2.496e^-4	0.49	UTR_3_PRIME dpr9 DOWNSTREAM dpr9
3L	5530075	3L_5530075_SNP [dm3] 3L_5536975_SNP [dm6]	T	C	2.498e^-4	0.49	INTERGENIC
3R	26637174	3R_26637174_SNP [dm3] 3R_30811452_SNP [dm6]	C	T	2.505e^-4	0.49	INTRON cindr
3L	5474389	3L_5474389_SNP [dm3] 3L_5481289_SNP [dm6]	T	G	2.515e^-4	0.49	NON_SYNONYMOUS_CODING CG4835
X	10079092	X_10079092_DEL [dm3] X_10185059_DEL [dm6]	AA	A	2.515e^-4	0.49	INTRON CG43902 & 1 other
3R	25158928	3R_25158928_SNP [dm3] 3R_29333206_SNP [dm6]	C	T	2.517e^-4	0.49	INTERGENIC
3R	25754897	3R_25754897_SNP [dm3] 3R_29929175_SNP [dm6]	C	T	2.519e^-4	0.49	SYNONYMOUS_CODING CG31202 DOWNSTREAM CG15522
3R	6542954	3R_6542954_SNP [dm3] 3R_10717232_SNP [dm6]	G	C	2.520e^-4	0.49	INTERGENIC
3L	13295280	3L_13295280_SNP [dm3] 3L_13302180_SNP [dm6]	T	C	2.522e^-4	0.49	UPSTREAM CR43911 DOWNSTREAM CR44557 & 1 other INTERGENIC
X	21058864	X_21058864_DEL [dm3] X_21187837_DEL [dm6]	TTCGAAAAACTC...	T	2.529e^-4	0.49	UPSTREAM CR45506 INTERGENIC
3R	27063591	3R_27063591_SNP [dm3] 3R_31237869_SNP [dm6]	T	A	2.530e^-4	0.49	INTRON qless
2L	7574470	2L_7574470_SNP [dm3] 2L_7574470_SNP [dm6]	T	C	2.531e^-4	0.49	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
X	5925768	X_5925768_SNP [dm3] X_6031735_SNP [dm6]	A	T	2.533e^-4	0.49	INTERGENIC	silencer mE1_HDAC_PRE
3L	10582406	3L_10582406_SNP [dm3] 3L_10589306_SNP [dm6]	G	A	2.534e^-4	0.49	INTRON A2bp1
3R	13850033	3R_13850033_SNP [dm3] 3R_18024311_SNP [dm6]	C	T	2.536e^-4	0.49	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
2R	2403133	2R_2403133_SNP [dm3] 2R_6515628_SNP [dm6]	C	A	2.543e^-4	0.49	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	13609972	X_13609972_SNP [dm3] X_13715939_SNP [dm6]	T	C	2.545e^-4	0.49	SYNONYMOUS_CODING NnaD INTRON CG9940	TF binding site mE1_TFBS_chinmo
X	14245282	X_14245282_SNP [dm3] X_14351249_SNP [dm6]	T	C	2.545e^-4	0.49	INTRON dpr8
3L	16716864	3L_16716864_SNP [dm3] 3L_16723764_SNP [dm6]	G	T	2.546e^-4	0.49	UTR_3_PRIME Dab DOWNSTREAM CG13026	TF binding site mE1_TFBS_cad
3R	23947778	3R_23947778_SNP [dm3] 3R_28122056_SNP [dm6]	T	G	2.550e^-4	0.49	INTERGENIC
3R	8639847	3R_8639847_SNP [dm3] 3R_12814125_SNP [dm6]	T	C	2.552e^-4	0.49	INTRON CG31345
3R	20608213	3R_20608213_SNP [dm3] 3R_24782491_SNP [dm6]	T	G	2.556e^-4	0.491	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2R	3264204	2R_3264204_SNP [dm3] 2R_7376699_SNP [dm6]	G	A	2.559e^-4	0.491	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	13893086	2R_13893086_SNP [dm3] 2R_18005581_SNP [dm6]	G	A	2.565e^-4	0.491	INTRON dpr13 EXON CR44419
3R	9611864	3R_9611864_SNP [dm3] 3R_13786142_SNP [dm6]	G	A	2.567e^-4	0.491	DOWNSTREAM Dip-B EXON CR45590
3L	17575767	3L_17575767_SNP [dm3] 3L_17582667_SNP [dm6]	C	T	2.567e^-4	0.491	INTRON Eip74EF
3L	12955778	3L_12955778_SNP [dm3] 3L_12962678_SNP [dm6]	G	A	2.569e^-4	0.491	INTERGENIC
3R	23947282	3R_23947282_SNP [dm3] 3R_28121560_SNP [dm6]	G	A	2.571e^-4	0.491	INTERGENIC
2R	13893647	2R_13893647_SNP [dm3] 2R_18006142_SNP [dm6]	T	A	2.573e^-4	0.491	DOWNSTREAM CR44419 INTRON dpr13
3L	13838776	3L_13838776_SNP [dm3] 3L_13845676_SNP [dm6]	G	A	2.583e^-4	0.492	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	21617123	3R_21617123_SNP [dm3] 3R_25791401_SNP [dm6]	C	T	2.584e^-4	0.492	UPSTREAM CG31093 DOWNSTREAM CR43631 INTERGENIC
3L	13739075	3L_13739075_SNP [dm3] 3L_13745975_SNP [dm6]	A	G	2.588e^-4	0.492	INTRON bru-3
3R	18501718	3R_18501718_SNP [dm3] 3R_22675996_SNP [dm6]	C	T	2.592e^-4	0.492	SYNONYMOUS_CODING CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25770691	3R_25770691_SNP [dm3] 3R_29944969_SNP [dm6]	G	T	2.594e^-4	0.492	NON_SYNONYMOUS_CODING CG15523
3R	22433620	3R_22433620_SNP [dm3] 3R_26607898_SNP [dm6]	A	G	2.598e^-4	0.492	EXON CR44951
3R	25583624	3R_25583624_SNP [dm3] 3R_29757902_SNP [dm6]	T	C	2.602e^-4	0.492	INTRON CR44953	TF binding site mE1_TFBS_cad
2R	2663101	2R_2663101_SNP [dm3] 2R_6775596_SNP [dm6]	C	T	2.604e^-4	0.492	INTRON Epac
3R	25153968	3R_25153968_SNP [dm3] 3R_29328246_SNP [dm6]	G	C	2.604e^-4	0.492	INTERGENIC
2R	11005925	2R_11005925_SNP [dm3] 2R_15118420_SNP [dm6]	A	C	2.610e^-4	0.492	INTRON chn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10283829	3L_10283829_SNP [dm3] 3L_10290729_SNP [dm6]	G	A	2.618e^-4	0.493	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9725064	3L_9725064_SNP [dm3] 3L_9731964_SNP [dm6]	G	A	2.622e^-4	0.493	NON_SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6554177	3R_6554177_SNP [dm3] 3R_10728455_SNP [dm6]	T	C	2.622e^-4	0.493	INTERGENIC
2R	11628282	2R_11628282_SNP [dm3] 2R_15740777_SNP [dm6]	G	T	2.625e^-4	0.493	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16222595	2L_16222595_SNP [dm3] 2L_16222595_SNP [dm6]	A	G	2.633e^-4	0.494	INTERGENIC
3R	17338626	3R_17338626_SNP [dm3] 3R_21512904_SNP [dm6]	G	A	2.636e^-4	0.494	DOWNSTREAM C15 INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

TotalVariants_3R phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results