DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.333e^-20)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	<

Kruskal-Wallis test

Covariate	χ²	p-value
In_3R_P	6.8976	0.0318
In_3R_K	18.1715	0.0001
In_3R_Mo	7.1118	0.0286

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3751 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	473509	3L_473509_INS [dm3] 3L_473509_INS [dm6]	C	CTTTTC	2.572e^-8	0.048	INTRON klar
3R	15891270	3R_15891270_SNP [dm3] 3R_20065548_SNP [dm6]	C	T	5.586e^-8	0.05	INTERGENIC
3R	15892162	3R_15892162_SNP [dm3] 3R_20066440_SNP [dm6]	A	G	1.140e^-7	0.05	INTERGENIC
3R	15886276	3R_15886276_SNP [dm3] 3R_20060554_SNP [dm6]	A	G	1.466e^-7	0.05	UPSTREAM CG4390 INTERGENIC
3R	15891264	3R_15891264_SNP [dm3] 3R_20065542_SNP [dm6]	G	A	1.609e^-7	0.05	INTERGENIC
X	16679364	X_16679364_DEL [dm3] X_16785331_DEL [dm6]	CGGATGTTTCTGAACGCAAA...	C	1.666e^-7	0.05	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
3R	15893343	3R_15893343_INS [dm3] 3R_20067621_INS [dm6]	A	AG	1.850e^-7	0.05	INTERGENIC
3R	15892199	3R_15892199_SNP [dm3] 3R_20066477_SNP [dm6]	T	G	2.616e^-7	0.056	INTERGENIC
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	3.484e^-7	0.056	SYNONYMOUS_CODING CG14857
3R	15892115	3R_15892115_SNP [dm3] 3R_20066393_SNP [dm6]	T	A	3.609e^-7	0.056	INTERGENIC
3R	15892179	3R_15892179_SNP [dm3] 3R_20066457_SNP [dm6]	A	T	3.632e^-7	0.056	INTERGENIC
3R	15892122	3R_15892122_SNP [dm3] 3R_20066400_SNP [dm6]	T	A	4.028e^-7	0.056	INTERGENIC
3R	15890913	3R_15890913_SNP [dm3] 3R_20065191_SNP [dm6]	T	C	4.299e^-7	0.056	INTERGENIC
X	7599741	X_7599741_DEL [dm3] X_7705708_DEL [dm6]	AAA	A	4.454e^-7	0.056	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15892176	3R_15892176_SNP [dm3] 3R_20066454_SNP [dm6]	T	C	5.021e^-7	0.056	INTERGENIC
3R	15881347	3R_15881347_SNP [dm3] 3R_20055625_SNP [dm6]	G	C	5.121e^-7	0.056	DOWNSTREAM CG4390 INTRON CG17193
3R	15892161	3R_15892161_SNP [dm3] 3R_20066439_SNP [dm6]	A	G	5.376e^-7	0.056	INTERGENIC
3R	15892071	3R_15892071_INS [dm3] 3R_20066349_INS [dm6]	A	AA	5.556e^-7	0.056	INTERGENIC
3L	18329829	3L_18329829_INS [dm3] 3L_18336729_INS [dm6]	T	TT	6.024e^-7	0.056	INTERGENIC
3R	15892155	3R_15892155_SNP [dm3] 3R_20066433_SNP [dm6]	G	A	6.437e^-7	0.056	INTERGENIC
X	8397999	X_8397999_DEL [dm3] X_8503966_DEL [dm6]	TT	T	7.297e^-7	0.056	INTRON CG33181
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	8.066e^-7	0.056	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15888186	3R_15888186_SNP [dm3] 3R_20062464_SNP [dm6]	C	A	8.504e^-7	0.056	INTERGENIC
X	19436752	X_19436752_INS [dm3] X_19542719_INS [dm6]	T	TCCTATAATAAAGT...	8.513e^-7	0.056	INTRON CG32532
3R	15875928	3R_15875928_SNP [dm3] 3R_20050206_SNP [dm6]	T	G	8.532e^-7	0.056	INTRON CG17193
3R	15877779	3R_15877779_SNP [dm3] 3R_20052057_SNP [dm6]	T	A	8.975e^-7	0.056	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15876056	3R_15876056_SNP [dm3] 3R_20050334_SNP [dm6]	T	A	9.124e^-7	0.056	INTRON CG17193
3R	15876004	3R_15876004_SNP [dm3] 3R_20050282_SNP [dm6]	G	C	9.238e^-7	0.056	INTRON CG17193
3R	15890792	3R_15890792_SNP [dm3] 3R_20065070_SNP [dm6]	T	G	9.382e^-7	0.056	INTERGENIC
3L	14908900	3L_14908900_DEL [dm3] 3L_14915800_DEL [dm6]	AA	A	9.506e^-7	0.056	INTRON DCX-EMAP
3R	15891978	3R_15891978_SNP [dm3] 3R_20066256_SNP [dm6]	A	T	9.672e^-7	0.056	INTERGENIC
3R	15891982	3R_15891982_SNP [dm3] 3R_20066260_SNP [dm6]	G	C	1.072e^-6	0.056	INTERGENIC
2R	10715588	2R_10715588_SNP [dm3] 2R_14828083_SNP [dm6]	A	T	1.086e^-6	0.056	INTERGENIC
3R	15890709	3R_15890709_SNP [dm3] 3R_20064987_SNP [dm6]	G	A	1.107e^-6	0.056	INTERGENIC
3R	15891906	3R_15891906_SNP [dm3] 3R_20066184_SNP [dm6]	G	T	1.139e^-6	0.056	INTERGENIC
3R	15892378	3R_15892378_SNP [dm3] 3R_20066656_SNP [dm6]	T	A	1.148e^-6	0.056	INTERGENIC
3R	15892036	3R_15892036_SNP [dm3] 3R_20066314_SNP [dm6]	A	G	1.173e^-6	0.056	INTERGENIC
3R	15892266	3R_15892266_SNP [dm3] 3R_20066544_SNP [dm6]	G	A	1.201e^-6	0.056	INTERGENIC
3L	14675527	3L_14675527_DEL [dm3] 3L_14682427_DEL [dm6]	ATTTTTCA	A	1.212e^-6	0.056	INTRON ome
3L	14909030	3L_14909030_SNP [dm3] 3L_14915930_SNP [dm6]	G	T	1.215e^-6	0.056	INTRON DCX-EMAP
3R	15881456	3R_15881456_SNP [dm3] 3R_20055734_SNP [dm6]	G	T	1.218e^-6	0.056	UTR_5_PRIME CG17193 DOWNSTREAM CG4390
3R	15892120	3R_15892120_SNP [dm3] 3R_20066398_SNP [dm6]	T	A	1.261e^-6	0.056	INTERGENIC
3R	15891876	3R_15891876_SNP [dm3] 3R_20066154_SNP [dm6]	T	A	1.332e^-6	0.058	INTERGENIC
X	7600034	X_7600034_DEL [dm3] X_7706001_DEL [dm6]	TT	T	1.388e^-6	0.059	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15892073	3R_15892073_SNP [dm3] 3R_20066351_SNP [dm6]	C	G	1.510e^-6	0.062	INTERGENIC
3R	15892521	3R_15892521_SNP [dm3] 3R_20066799_SNP [dm6]	G	A	1.511e^-6	0.062	INTERGENIC
3R	17165416	3R_17165416_DEL [dm3] 3R_21339694_DEL [dm6]	TGTGTGT	T	1.672e^-6	0.066	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
3R	15892451	3R_15892451_SNP [dm3] 3R_20066729_SNP [dm6]	G	T	1.697e^-6	0.066	INTERGENIC
3L	4981535	3L_4981535_DEL [dm3] 3L_4981535_DEL [dm6]	GG	G	1.742e^-6	0.067	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
3R	15888896	3R_15888896_SNP [dm3] 3R_20063174_SNP [dm6]	A	C	1.824e^-6	0.068	INTERGENIC
3R	15875781	3R_15875781_SNP [dm3] 3R_20050059_SNP [dm6]	A	G	1.893e^-6	0.07	INTRON CG17193
3R	15892601	3R_15892601_SNP [dm3] 3R_20066879_SNP [dm6]	G	A	2.089e^-6	0.074	INTERGENIC
3R	15875755	3R_15875755_SNP [dm3] 3R_20050033_SNP [dm6]	G	A	2.097e^-6	0.074	INTRON CG17193
3R	15892011	3R_15892011_SNP [dm3] 3R_20066289_SNP [dm6]	A	T	2.257e^-6	0.078	INTERGENIC
3R	15892640	3R_15892640_SNP [dm3] 3R_20066918_SNP [dm6]	A	G	2.281e^-6	0.078	INTERGENIC
3R	15875900	3R_15875900_SNP [dm3] 3R_20050178_SNP [dm6]	T	G	2.320e^-6	0.078	INTRON CG17193
3R	15877862	3R_15877862_SNP [dm3] 3R_20052140_SNP [dm6]	C	T	2.457e^-6	0.08	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15877860	3R_15877860_SNP [dm3] 3R_20052138_SNP [dm6]	C	A	2.483e^-6	0.08	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	17628810	X_17628810_SNP [dm3] X_17734777_SNP [dm6]	C	A	2.560e^-6	0.08	UTR_5_PRIME CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15887041	3R_15887041_SNP [dm3] 3R_20061319_SNP [dm6]	A	G	2.598e^-6	0.08	INTERGENIC
3R	15891134	3R_15891134_SNP [dm3] 3R_20065412_SNP [dm6]	A	G	2.615e^-6	0.08	INTERGENIC
3R	13262235	3R_13262235_INS [dm3] 3R_17436513_INS [dm6]	T	TCT	2.764e^-6	0.084	INTRON CG5873
X	11097583	X_11097583_INS [dm3] X_11203550_INS [dm6]	A	AGAATTTA	2.988e^-6	0.089	DOWNSTREAM CG11106 INTERGENIC
3R	15887107	3R_15887107_SNP [dm3] 3R_20061385_SNP [dm6]	A	G	3.054e^-6	0.089	INTERGENIC
2L	12281357	2L_12281357_INS [dm3] 2L_12281357_INS [dm6]	G	GTGGGCAG	3.101e^-6	0.089	INTRON aret
3R	9552543	3R_9552543_DEL [dm3] 3R_13726821_DEL [dm6]	TAAATG	T	3.162e^-6	0.09	INTRON CG34383
3R	15892611	3R_15892611_INS [dm3] 3R_20066889_INS [dm6]	A	AT	3.246e^-6	0.091	INTERGENIC
3R	15890714	3R_15890714_SNP [dm3] 3R_20064992_SNP [dm6]	G	A	3.399e^-6	0.092	INTERGENIC
3R	15882866	3R_15882866_SNP [dm3] 3R_20057144_SNP [dm6]	G	A	3.425e^-6	0.092	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15894982	3R_15894982_SNP [dm3] 3R_20069260_SNP [dm6]	T	C	3.438e^-6	0.092	INTERGENIC
3L	6793188	3L_6793188_SNP [dm3] 3L_6800088_SNP [dm6]	C	A	3.484e^-6	0.092	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	15880819	3R_15880819_SNP [dm3] 3R_20055097_SNP [dm6]	T	A	3.581e^-6	0.093	INTRON CG17193
X	17605826	X_17605826_INS [dm3] X_17711793_INS [dm6]	A	AGCTAAATATTA...	3.805e^-6	0.097	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15815337	3R_15815337_INS [dm3] 3R_19989615_INS [dm6]	C	CTTTTCCATCCAAATGTATA...	3.810e^-6	0.097	INTRON Hs6st
3R	15892694	3R_15892694_SNP [dm3] 3R_20066972_SNP [dm6]	T	C	3.954e^-6	0.099	INTERGENIC
3R	15875812	3R_15875812_SNP [dm3] 3R_20050090_SNP [dm6]	C	A	4.058e^-6	0.099	INTRON CG17193
3R	15893334	3R_15893334_SNP [dm3] 3R_20067612_SNP [dm6]	A	T	4.071e^-6	0.099	INTERGENIC
3R	15875906	3R_15875906_SNP [dm3] 3R_20050184_SNP [dm6]	G	A	4.208e^-6	0.101	INTRON CG17193
3R	15892009	3R_15892009_SNP [dm3] 3R_20066287_SNP [dm6]	C	T	4.392e^-6	0.103	INTERGENIC
3L	18552944	3L_18552944_DEL [dm3] 3L_18559844_DEL [dm6]	ACTTTG	A	4.443e^-6	0.103	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6519178	3L_6519178_SNP [dm3] 3L_6526078_SNP [dm6]	A	G	4.512e^-6	0.103	INTRON sfl
2R	20348873	2R_20348873_MNP [dm3] 2R_24461350_MNP [dm6]	TGG	AAA	4.557e^-6	0.103	INTRON CG13579
3R	15892579	3R_15892579_SNP [dm3] 3R_20066857_SNP [dm6]	A	G	4.633e^-6	0.103	INTERGENIC
X	11479413	X_11479413_SNP [dm3] X_11585380_SNP [dm6]	C	G	4.747e^-6	0.103	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5955959	2L_5955959_SNP [dm3] 2L_5955959_SNP [dm6]	G	A	4.754e^-6	0.103	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2L	16614018	2L_16614018_INS [dm3] 2L_16614018_INS [dm6]	T	TT	4.804e^-6	0.103	INTRON CG42389
3R	9552551	3R_9552551_DEL [dm3] 3R_13726829_DEL [dm6]	TG	T	4.812e^-6	0.103	INTRON CG34383
3L	18503519	3L_18503519_INS [dm3] 3L_18510419_INS [dm6]	G	GGGT	4.817e^-6	0.103	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	9552564	3R_9552564_DEL [dm3] 3R_13726842_DEL [dm6]	AGTCT	A	4.924e^-6	0.104	INTRON CG34383
3R	15877380	3R_15877380_SNP [dm3] 3R_20051658_SNP [dm6]	T	A	5.679e^-6	0.117	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	7266024	X_7266024_SNP [dm3] X_7371991_SNP [dm6]	G	A	5.731e^-6	0.117	INTRON CG1677 & 1 other	TF binding site mE1_TFBS_HSA
3R	9552554	3R_9552554_DEL [dm3] 3R_13726832_DEL [dm6]	TAAA	T	5.749e^-6	0.117	INTRON CG34383
3R	15892593	3R_15892593_SNP [dm3] 3R_20066871_SNP [dm6]	G	T	5.816e^-6	0.117	INTERGENIC
3R	10628425	3R_10628425_SNP [dm3] 3R_14802703_SNP [dm6]	C	A	5.907e^-6	0.118	INTRON CG14857
3R	15877888	3R_15877888_SNP [dm3] 3R_20052166_SNP [dm6]	C	G	6.021e^-6	0.119	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15877845	3R_15877845_SNP [dm3] 3R_20052123_SNP [dm6]	C	T	6.116e^-6	0.119	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15892304	3R_15892304_SNP [dm3] 3R_20066582_SNP [dm6]	C	T	6.196e^-6	0.12	INTERGENIC
3R	15892624	3R_15892624_DEL [dm3] 3R_20066902_DEL [dm6]	TG	T	6.292e^-6	0.12	INTERGENIC
3R	15877377	3R_15877377_SNP [dm3] 3R_20051655_SNP [dm6]	C	A	6.622e^-6	0.123	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15880404	3R_15880404_MNP [dm3] 3R_20054682_MNP [dm6]	GTT	AAA	6.700e^-6	0.123	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15881036	3R_15881036_SNP [dm3] 3R_20055314_SNP [dm6]	C	T	6.787e^-6	0.123	INTRON CG17193
3L	16441301	3L_16441301_INS [dm3] 3L_16448201_INS [dm6]	A	CATT	6.851e^-6	0.123	INTRON CG33158 & 1 other
X	16054063	X_16054063_SNP [dm3] X_16160030_SNP [dm6]	G	A	6.936e^-6	0.123	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25604867	3R_25604867_SNP [dm3] 3R_29779145_SNP [dm6]	A	C	6.989e^-6	0.123	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
3R	15875920	3R_15875920_SNP [dm3] 3R_20050198_SNP [dm6]	C	T	7.146e^-6	0.123	INTRON CG17193
3L	6793256	3L_6793256_SNP [dm3] 3L_6800156_SNP [dm6]	C	T	7.218e^-6	0.123	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15877853	3R_15877853_SNP [dm3] 3R_20052131_SNP [dm6]	A	C	7.251e^-6	0.123	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15880421	3R_15880421_INS [dm3] 3R_20054699_INS [dm6]	A	AATTTAATGAATA...	7.259e^-6	0.123	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9552529	3R_9552529_SNP [dm3] 3R_13726807_SNP [dm6]	T	G	7.261e^-6	0.123	INTRON CG34383
3R	15815350	3R_15815350_SNP [dm3] 3R_19989628_SNP [dm6]	C	T	7.273e^-6	0.123	INTRON Hs6st
3R	5764164	3R_5764164_DEL [dm3] 3R_9938442_DEL [dm6]	AACTC	A	7.336e^-6	0.123	INTRON Glut4EF	TF binding site mE1_TFBS_cad
3R	15875936	3R_15875936_SNP [dm3] 3R_20050214_SNP [dm6]	G	A	7.370e^-6	0.123	INTRON CG17193
3R	15895188	3R_15895188_SNP [dm3] 3R_20069466_SNP [dm6]	T	A	7.385e^-6	0.123	INTERGENIC
3R	23484918	3R_23484918_SNP [dm3] 3R_27659196_SNP [dm6]	A	T	7.610e^-6	0.125	INTRON Mlc1
3R	15876868	3R_15876868_SNP [dm3] 3R_20051146_SNP [dm6]	T	G	8.338e^-6	0.136	INTRON CG17193
3R	15883406	3R_15883406_SNP [dm3] 3R_20057684_SNP [dm6]	A	C	8.712e^-6	0.14	UPSTREAM mdlc & 1 other INTRON CG4390	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	11098023	X_11098023_SNP [dm3] X_11203990_SNP [dm6]	T	C	8.771e^-6	0.14	INTERGENIC
3L	14908985	3L_14908985_SNP [dm3] 3L_14915885_SNP [dm6]	T	A	8.805e^-6	0.14	INTRON DCX-EMAP
3R	25519572	3R_25519572_SNP [dm3] 3R_29693850_SNP [dm6]	A	G	8.960e^-6	0.141	INTRON dmrt99B	TF binding site mE1_TFBS_chinmo
2R	6564278	2R_6564278_DEL [dm3] 2R_10676773_DEL [dm6]	GT	G	9.082e^-6	0.141	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15880401	3R_15880401_SNP [dm3] 3R_20054679_SNP [dm6]	T	A	9.187e^-6	0.141	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15877846	3R_15877846_SNP [dm3] 3R_20052124_SNP [dm6]	A	G	9.266e^-6	0.141	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	13307854	3R_13307854_SNP [dm3] 3R_17482132_SNP [dm6]	A	G	9.279e^-6	0.141	DOWNSTREAM Dscam3 INTRON Dscam3
2L	521426	2L_521426_SNP [dm3] 2L_521426_SNP [dm6]	G	A	9.377e^-6	0.141	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13190806	3L_13190806_SNP [dm3] 3L_13197706_SNP [dm6]	C	T	9.408e^-6	0.141	INTERGENIC	silencer mE1_HDAC_PRE
X	20302476	X_20302476_SNP [dm3] X_20431449_SNP [dm6]	G	A	9.495e^-6	0.141	SYNONYMOUS_CODING mal
X	11097591	X_11097591_SNP [dm3] X_11203558_SNP [dm6]	T	G	9.594e^-6	0.141	DOWNSTREAM CG11106 INTERGENIC
2R	18206066	2R_18206066_DEL [dm3] 2R_22318561_DEL [dm6]	AGCAACAACA	A	9.605e^-6	0.141	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21439514	3R_21439514_SNP [dm3] 3R_25613792_SNP [dm6]	T	C	9.667e^-6	0.141	UPSTREAM CG5079 INTRON Npl4
3L	16807416	3L_16807416_SNP [dm3] 3L_16814316_SNP [dm6]	T	A	9.949e^-6	0.141	INTRON nudC & 1 other
3L	9622447	3L_9622447_SNP [dm3] 3L_9629347_SNP [dm6]	A	G	9.951e^-6	0.141	UPSTREAM CG8336 & 1 other INTRON CG8336
X	16679166	X_16679166_DEL [dm3] X_16785133_DEL [dm6]	AGGA	A	1.002e^-5	0.141	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
3R	15876894	3R_15876894_SNP [dm3] 3R_20051172_SNP [dm6]	T	G	1.004e^-5	0.141	INTRON CG17193
2L	520743	2L_520743_SNP [dm3] 2L_520743_SNP [dm6]	C	T	1.007e^-5	0.141	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	11252079	3R_11252079_DEL [dm3] 3R_15426357_DEL [dm6]	GCTC	G	1.028e^-5	0.143	INTRON CG6118
3R	15883375	3R_15883375_SNP [dm3] 3R_20057653_SNP [dm6]	T	C	1.039e^-5	0.143	UPSTREAM mdlc & 1 other INTRON CG4390	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12107226	3L_12107226_SNP [dm3] 3L_12114126_SNP [dm6]	T	A	1.068e^-5	0.146	INTERGENIC
3R	15324769	3R_15324769_SNP [dm3] 3R_19499047_SNP [dm6]	C	A	1.088e^-5	0.148	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	4175919	X_4175919_DEL [dm3] X_4281886_DEL [dm6]	AA	A	1.116e^-5	0.151	INTERGENIC
3R	15815375	3R_15815375_SNP [dm3] 3R_19989653_SNP [dm6]	A	C	1.141e^-5	0.152	INTRON Hs6st
2L	5255253	2L_5255253_SNP [dm3] 2L_5255253_SNP [dm6]	A	T	1.144e^-5	0.152	INTRON tkv
3R	15893441	3R_15893441_SNP [dm3] 3R_20067719_SNP [dm6]	A	G	1.152e^-5	0.152	INTERGENIC
3R	15245946	3R_15245946_SNP [dm3] 3R_19420224_SNP [dm6]	C	T	1.178e^-5	0.155	INTRON CG31221
X	7682833	X_7682833_SNP [dm3] X_7788800_SNP [dm6]	A	T	1.209e^-5	0.158	INTERGENIC
3L	10745354	3L_10745354_SNP [dm3] 3L_10752254_SNP [dm6]	C	A	1.231e^-5	0.159	INTERGENIC
3R	15893425	3R_15893425_SNP [dm3] 3R_20067703_SNP [dm6]	C	T	1.235e^-5	0.159	INTERGENIC
3R	15880285	3R_15880285_SNP [dm3] 3R_20054563_SNP [dm6]	G	A	1.273e^-5	0.162	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15880400	3R_15880400_SNP [dm3] 3R_20054678_SNP [dm6]	T	G	1.274e^-5	0.162	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24803915	3R_24803915_SNP [dm3] 3R_28978193_SNP [dm6]	T	C	1.293e^-5	0.162	INTERGENIC
3R	15874689	3R_15874689_SNP [dm3] 3R_20048967_SNP [dm6]	G	C	1.314e^-5	0.162	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
2L	20125599	2L_20125599_DEL [dm3] 2L_20125599_DEL [dm6]	TC	T	1.321e^-5	0.162	INTERGENIC
2L	19549387	2L_19549387_INS [dm3] 2L_19549387_INS [dm6]	T	TGAAT	1.323e^-5	0.162	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3L	18291644	3L_18291644_INS [dm3] 3L_18298544_INS [dm6]	TT	CGAGGGCTAATGGCTCGAAG...	1.325e^-5	0.162	DOWNSTREAM CG13700 INTERGENIC
X	7682834	X_7682834_SNP [dm3] X_7788801_SNP [dm6]	T	G	1.328e^-5	0.162	INTERGENIC
3L	12066022	3L_12066022_INS [dm3] 3L_12072922_INS [dm6]	T	TT	1.344e^-5	0.163	INTRON Sema-5c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	21946825	X_21946825_INS [dm3] X_22544989_INS [dm6]	G	GG	1.402e^-5	0.165	UPSTREAM CG17599 INTERGENIC
3L	13190819	3L_13190819_SNP [dm3] 3L_13197719_SNP [dm6]	T	A	1.403e^-5	0.165	INTERGENIC	silencer mE1_HDAC_PRE
2R	14526950	2R_14526950_INS [dm3] 2R_18639445_INS [dm6]	A	ATAG	1.403e^-5	0.165	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19616121	2R_19616121_DEL [dm3] 2R_23728598_DEL [dm6]	GG	A	1.404e^-5	0.165	INTRON Sesn
2L	10510862	2L_10510862_SNP [dm3] 2L_10510862_SNP [dm6]	C	A	1.406e^-5	0.165	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other
2L	12280873	2L_12280873_SNP [dm3] 2L_12280873_SNP [dm6]	G	T	1.420e^-5	0.165	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15881230	3R_15881230_SNP [dm3] 3R_20055508_SNP [dm6]	T	G	1.428e^-5	0.165	DOWNSTREAM CG4390 INTRON CG17193
3R	15888127	3R_15888127_SNP [dm3] 3R_20062405_SNP [dm6]	G	A	1.473e^-5	0.169	INTERGENIC
3R	15875882	3R_15875882_SNP [dm3] 3R_20050160_SNP [dm6]	A	T	1.474e^-5	0.169	INTRON CG17193
3R	15709694	3R_15709694_SNP [dm3] 3R_19883972_SNP [dm6]	A	C	1.491e^-5	0.169	INTRON Pk92B
3R	24803908	3R_24803908_SNP [dm3] 3R_28978186_SNP [dm6]	A	G	1.500e^-5	0.169	INTERGENIC
3L	6317088	3L_6317088_SNP [dm3] 3L_6323988_SNP [dm6]	T	C	1.508e^-5	0.169	INTERGENIC
3R	15878285	3R_15878285_SNP [dm3] 3R_20052563_SNP [dm6]	G	A	1.513e^-5	0.169	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	25605188	3R_25605188_SNP [dm3] 3R_29779466_SNP [dm6]	C	T	1.538e^-5	0.169	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10628954	3R_10628954_SNP [dm3] 3R_14803232_SNP [dm6]	C	T	1.550e^-5	0.169	SPLICE_SITE_REGION CG14857 DOWNSTREAM btsz INTRON CG14857	TF binding site mE1_TFBS_cad
X	3471683	X_3471683_SNP [dm3] X_3577650_SNP [dm6]	G	T	1.552e^-5	0.169	INTRON AstA-R1
3L	21861112	3L_21861112_SNP [dm3] 3L_21868012_SNP [dm6]	A	C	1.553e^-5	0.169	INTRON mub	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11852166	X_11852166_DEL [dm3] X_11958133_DEL [dm6]	ATT	A	1.559e^-5	0.169	INTRON cac
3L	12109684	3L_12109684_SNP [dm3] 3L_12116584_SNP [dm6]	A	G	1.603e^-5	0.17	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10777019	3R_10777019_SNP [dm3] 3R_14951297_SNP [dm6]	T	C	1.617e^-5	0.17	INTERGENIC
3R	24803910	3R_24803910_SNP [dm3] 3R_28978188_SNP [dm6]	G	A	1.619e^-5	0.17	INTERGENIC
3L	13190849	3L_13190849_SNP [dm3] 3L_13197749_SNP [dm6]	T	C	1.624e^-5	0.17	INTERGENIC	silencer mE1_HDAC_PRE
3L	17026634	3L_17026634_SNP [dm3] 3L_17033534_SNP [dm6]	C	T	1.624e^-5	0.17	UPSTREAM CR45756 EXON CR43250	TF binding site BDTNP1_TFBS_dl
3L	14550752	3L_14550752_SNP [dm3] 3L_14557652_SNP [dm6]	C	T	1.626e^-5	0.17	INTERGENIC
X	21364686	X_21364686_INS [dm3] X_21493659_INS [dm6]	A	ACATA	1.641e^-5	0.171	INTERGENIC
X	12782912	X_12782912_DEL [dm3] X_12888879_DEL [dm6]	TTTT	T	1.648e^-5	0.171	INTRON Pde9
2R	6564276	2R_6564276_INS [dm3] 2R_10676771_INS [dm6]	A	AAT	1.656e^-5	0.171	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15751703	3L_15751703_SNP [dm3] 3L_15758603_SNP [dm6]	G	A	1.671e^-5	0.171	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12525909	3L_12525909_SNP [dm3] 3L_12532809_SNP [dm6]	G	T	1.690e^-5	0.171	INTRON Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14384514	3L_14384514_SNP [dm3] 3L_14391414_SNP [dm6]	C	T	1.703e^-5	0.171	INTERGENIC
3R	15889001	3R_15889001_SNP [dm3] 3R_20063279_SNP [dm6]	C	A	1.705e^-5	0.171	INTERGENIC
3R	15893431	3R_15893431_SNP [dm3] 3R_20067709_SNP [dm6]	G	C	1.735e^-5	0.171	INTERGENIC
X	12407886	X_12407886_DEL [dm3] X_12513853_DEL [dm6]	AGA	A	1.736e^-5	0.171	INTRON CG2556	TF binding site mE1_TFBS_HSA
3R	15877349	3R_15877349_DEL [dm3] 3R_20051627_DEL [dm6]	TCAA	T	1.743e^-5	0.171	INTRON CG17193
3R	15877356	3R_15877356_DEL [dm3] 3R_20051634_DEL [dm6]	AAACGACACATCC...	A	1.743e^-5	0.171	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15877373	3R_15877373_MNP [dm3] 3R_20051651_MNP [dm6]	GCA	TAT	1.743e^-5	0.171	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	13307845	3R_13307845_SNP [dm3] 3R_17482123_SNP [dm6]	T	C	1.782e^-5	0.173	DOWNSTREAM Dscam3 INTRON Dscam3
3R	15875938	3R_15875938_SNP [dm3] 3R_20050216_SNP [dm6]	A	T	1.783e^-5	0.173	INTRON CG17193
X	20302666	X_20302666_SNP [dm3] X_20431639_SNP [dm6]	T	C	1.825e^-5	0.176	SYNONYMOUS_CODING mal	TF binding site mE1_TFBS_sens
3R	15889002	3R_15889002_SNP [dm3] 3R_20063280_SNP [dm6]	C	T	1.848e^-5	0.177	INTERGENIC
3L	2945474	3L_2945474_SNP [dm3] 3L_2945474_SNP [dm6]	T	C	1.852e^-5	0.177	UTR_3_PRIME Shab INTRON Shab
3L	3867643	3L_3867643_SNP [dm3] 3L_3867643_SNP [dm6]	G	C	1.864e^-5	0.178	INTERGENIC
3R	15815325	3R_15815325_SNP [dm3] 3R_19989603_SNP [dm6]	C	T	1.876e^-5	0.178	INTRON Hs6st
X	5606090	X_5606090_SNP [dm3] X_5712057_SNP [dm6]	C	T	1.940e^-5	0.183	INTRON CG33080
X	12542297	X_12542297_SNP [dm3] X_12648264_SNP [dm6]	C	G	1.960e^-5	0.184	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	12065886	3L_12065886_SNP [dm3] 3L_12072786_SNP [dm6]	T	A	1.984e^-5	0.184	INTRON Sema-5c	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	19945377	X_19945377_INS [dm3] X_20051344_INS [dm6]	A	ACA	1.984e^-5	0.184	UTR_5_PRIME CG9570 INTRON Dop2R	TF binding site mE1_TFBS_chinmo
3R	26473344	3R_26473344_SNP [dm3] 3R_30647622_SNP [dm6]	A	T	1.989e^-5	0.184	INTRON PH4alphaPV
2L	11775302	2L_11775302_SNP [dm3] 2L_11775302_SNP [dm6]	G	A	2.026e^-5	0.186	INTERGENIC
2R	11772275	2R_11772275_INS [dm3] 2R_15884770_INS [dm6]	G	GATGTG	2.051e^-5	0.188	INTRON sli
2R	1216328	2R_1216328_INS [dm3] 2R_5328823_INS [dm6]	G	GTTGTGCAGTAGG...	2.082e^-5	0.188	INTRON sxc
X	14920698	X_14920698_INS [dm3] X_15026665_INS [dm6]	A	ACAATA	2.091e^-5	0.188	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_twi
3R	10776969	3R_10776969_SNP [dm3] 3R_14951247_SNP [dm6]	T	C	2.095e^-5	0.188	INTERGENIC
3R	15895308	3R_15895308_SNP [dm3] 3R_20069586_SNP [dm6]	C	T	2.098e^-5	0.188	INTERGENIC
3L	5416393	3L_5416393_DEL [dm3] 3L_5423293_DEL [dm6]	CA	C	2.104e^-5	0.188	UPSTREAM CG34391 INTERGENIC
3R	15815361	3R_15815361_INS [dm3] 3R_19989639_INS [dm6]	T	TATGT	2.226e^-5	0.197	INTRON Hs6st
3R	15815368	3R_15815368_INS [dm3] 3R_19989646_INS [dm6]	T	TAACCA	2.226e^-5	0.197	INTRON Hs6st
3L	13190744	3L_13190744_SNP [dm3] 3L_13197644_SNP [dm6]	G	A	2.239e^-5	0.197	INTERGENIC	silencer mE1_HDAC_PRE
3R	15699801	3R_15699801_SNP [dm3] 3R_19874079_SNP [dm6]	G	A	2.251e^-5	0.197	INTRON CG4562
3R	21440358	3R_21440358_SNP [dm3] 3R_25614636_SNP [dm6]	T	A	2.265e^-5	0.198	DOWNSTREAM CG5079 INTRON Npl4
2R	11829935	2R_11829935_SNP [dm3] 2R_15942430_SNP [dm6]	T	C	2.279e^-5	0.198	UPSTREAM CG8299 & 1 other INTERGENIC
3R	15892639	3R_15892639_SNP [dm3] 3R_20066917_SNP [dm6]	G	A	2.298e^-5	0.198	INTERGENIC
3R	15874695	3R_15874695_SNP [dm3] 3R_20048973_SNP [dm6]	G	A	2.301e^-5	0.198	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
2L	21064263	2L_21064263_SNP [dm3] 2L_21064263_SNP [dm6]	T	C	2.316e^-5	0.198	INTRON CG9265	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	12280834	2L_12280834_SNP [dm3] 2L_12280834_SNP [dm6]	T	A	2.321e^-5	0.198	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15805669	3R_15805669_SNP [dm3] 3R_19979947_SNP [dm6]	A	G	2.347e^-5	0.198	DOWNSTREAM CG31213 INTRON Hs6st	TF binding site BDTNP1_TFBS_hb
2L	12280905	2L_12280905_SNP [dm3] 2L_12280905_SNP [dm6]	A	C	2.348e^-5	0.198	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9552654	3R_9552654_SNP [dm3] 3R_13726932_SNP [dm6]	C	A	2.349e^-5	0.198	INTRON CG34383
3R	15884874	3R_15884874_SNP [dm3] 3R_20059152_SNP [dm6]	G	C	2.360e^-5	0.198	UTR_3_PRIME mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1
X	19141960	X_19141960_SNP [dm3] X_19247927_SNP [dm6]	C	T	2.387e^-5	0.198	UPSTREAM CG7992 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4981523	3L_4981523_SNP [dm3] 3L_4981523_SNP [dm6]	A	T	2.389e^-5	0.198	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
3R	15818359	3R_15818359_SNP [dm3] 3R_19992637_SNP [dm6]	G	A	2.468e^-5	0.204	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15669921	3R_15669921_SNP [dm3] 3R_19844199_SNP [dm6]	T	G	2.528e^-5	0.207	INTERGENIC
X	5619049	X_5619049_DEL [dm3] X_5725016_DEL [dm6]	TATTCAT	T	2.535e^-5	0.207	INTRON CG32758
2L	5954897	2L_5954897_SNP [dm3] 2L_5954897_SNP [dm6]	A	C	2.544e^-5	0.207	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
3R	15880417	3R_15880417_SNP [dm3] 3R_20054695_SNP [dm6]	C	A	2.565e^-5	0.208	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9620166	3L_9620166_SNP [dm3] 3L_9627066_SNP [dm6]	T	A	2.577e^-5	0.208	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b
X	2430328	X_2430328_DEL [dm3] X_2536295_DEL [dm6]	TT	T	2.598e^-5	0.208	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	18059813	3R_18059813_SNP [dm3] 3R_22234091_SNP [dm6]	A	G	2.606e^-5	0.208	INTRON SKIP
2L	12280729	2L_12280729_SNP [dm3] 2L_12280729_SNP [dm6]	G	A	2.612e^-5	0.208	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16384693	3R_16384693_SNP [dm3] 3R_20558971_SNP [dm6]	C	T	2.639e^-5	0.209	SYNONYMOUS_CODING CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2957566	X_2957566_INS [dm3] X_3063533_INS [dm6]	T	TT	2.650e^-5	0.209	INTRON kirre
3L	13190791	3L_13190791_SNP [dm3] 3L_13197691_SNP [dm6]	T	A	2.651e^-5	0.209	INTERGENIC	silencer mE1_HDAC_PRE
3R	15768692	3R_15768692_SNP [dm3] 3R_19942970_SNP [dm6]	A	G	2.674e^-5	0.209	INTRON Hs6st
3R	15877875	3R_15877875_SNP [dm3] 3R_20052153_SNP [dm6]	T	C	2.686e^-5	0.209	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	3390792	2L_3390792_INS [dm3] 2L_3390792_INS [dm6]	G	GG	2.691e^-5	0.209	INTERGENIC
X	9050782	X_9050782_SNP [dm3] X_9156749_SNP [dm6]	G	A	2.717e^-5	0.21	UPSTREAM His3.3B DOWNSTREAM Ost48 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8980602	2L_8980602_SNP [dm3] 2L_8980602_SNP [dm6]	A	T	2.726e^-5	0.21	UPSTREAM CG18662 INTRON CG13101
3L	6519214	3L_6519214_SNP [dm3] 3L_6526114_SNP [dm6]	T	C	2.743e^-5	0.21	INTRON sfl
3R	11955831	3R_11955831_SNP [dm3] 3R_16130109_SNP [dm6]	C	G	2.755e^-5	0.21	INTRON Sb
3L	16960065	3L_16960065_SNP [dm3] 3L_16966965_SNP [dm6]	T	C	2.763e^-5	0.21	INTRON Nc73EF
3L	15704772	3L_15704772_INS [dm3] 3L_15711672_INS [dm6]	T	TT	2.769e^-5	0.21	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	17635879	X_17635879_DEL [dm3] X_17741846_DEL [dm6]	CC	C	2.855e^-5	0.216	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15894454	3R_15894454_SNP [dm3] 3R_20068732_SNP [dm6]	T	A	2.993e^-5	0.225	INTERGENIC
2L	6362230	2L_6362230_DEL [dm3] 2L_6362230_DEL [dm6]	AA	A	2.996e^-5	0.225	DOWNSTREAM CR44778 INTERGENIC
3R	27235324	3R_27235324_DEL [dm3] 3R_31409602_DEL [dm6]	TAAACGTATTT...	T	3.064e^-5	0.229	INTRON Gprk2
2R	7332448	2R_7332448_SNP [dm3] 2R_11444943_SNP [dm6]	G	A	3.111e^-5	0.23	INTRON qvr
3R	15875730	3R_15875730_SNP [dm3] 3R_20050008_SNP [dm6]	A	G	3.113e^-5	0.23	INTRON CG17193
3L	14644851	3L_14644851_SNP [dm3] 3L_14651751_SNP [dm6]	T	A	3.118e^-5	0.23	INTRON dlp	TF binding site mE1_TFBS_cnc
2R	19890208	2R_19890208_DEL [dm3] 2R_24002685_DEL [dm6]	TCATCCATT	T	3.172e^-5	0.233	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17441635	X_17441635_SNP [dm3] X_17547602_SNP [dm6]	C	G	3.212e^-5	0.234	INTRON CG43658
X	19496052	X_19496052_INS [dm3] X_19602019_INS [dm6]	T	TTT	3.222e^-5	0.234	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18225856	2R_18225856_DEL [dm3] 2R_22338351_DEL [dm6]	TCGGGTGTATGTTT...	T	3.229e^-5	0.234	INTRON Liprin-gamma
X	17605820	X_17605820_DEL [dm3] X_17711787_DEL [dm6]	AA	A	3.233e^-5	0.234	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12280836	2L_12280836_SNP [dm3] 2L_12280836_SNP [dm6]	A	T	3.239e^-5	0.234	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9552678	3R_9552678_SNP [dm3] 3R_13726956_SNP [dm6]	T	A	3.255e^-5	0.234	INTRON CG34383
2R	9143253	2R_9143253_DEL [dm3] 2R_13255748_DEL [dm6]	AA	A	3.262e^-5	0.234	UPSTREAM CR44343 & 1 other INTERGENIC
3R	14144557	3R_14144557_DEL [dm3] 3R_18318835_DEL [dm6]	TAT	T	3.299e^-5	0.235	INTRON CG31235
2L	12280816	2L_12280816_SNP [dm3] 2L_12280816_SNP [dm6]	A	G	3.319e^-5	0.235	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17827034	3R_17827034_SNP [dm3] 3R_22001312_SNP [dm6]	C	T	3.323e^-5	0.235	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
3R	15877457	3R_15877457_SNP [dm3] 3R_20051735_SNP [dm6]	G	A	3.346e^-5	0.236	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	15490779	3L_15490779_SNP [dm3] 3L_15497679_SNP [dm6]	A	G	3.374e^-5	0.237	SYNONYMOUS_CODING CG13455 UPSTREAM CG7276	TF binding site mE1_TFBS_cad
2L	7631417	2L_7631417_DEL [dm3] 2L_7631417_DEL [dm6]	TAATGGTATTATGGTTATAT...	T	3.399e^-5	0.237	INTERGENIC
2L	5954803	2L_5954803_SNP [dm3] 2L_5954803_SNP [dm6]	A	G	3.405e^-5	0.237	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
3L	13190829	3L_13190829_DEL [dm3] 3L_13197729_DEL [dm6]	TGAAGAAGCACCA...	T	3.412e^-5	0.237	INTERGENIC	silencer mE1_HDAC_PRE
3R	15884245	3R_15884245_SNP [dm3] 3R_20058523_SNP [dm6]	G	A	3.432e^-5	0.237	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	14908942	3L_14908942_INS [dm3] 3L_14915842_INS [dm6]	A	AA	3.437e^-5	0.237	INTRON DCX-EMAP
3R	15815371	3R_15815371_SNP [dm3] 3R_19989649_SNP [dm6]	A	T	3.489e^-5	0.24	INTRON Hs6st
3R	25519588	3R_25519588_SNP [dm3] 3R_29693866_SNP [dm6]	G	C	3.535e^-5	0.242	INTRON dmrt99B
3R	10616740	3R_10616740_SNP [dm3] 3R_14791018_SNP [dm6]	T	G	3.551e^-5	0.242	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	16432112	3L_16432112_SNP [dm3] 3L_16439012_SNP [dm6]	A	G	3.585e^-5	0.243	INTRON CG33158 & 1 other
2L	5955752	2L_5955752_SNP [dm3] 2L_5955752_SNP [dm6]	A	T	3.593e^-5	0.243	DOWNSTREAM CG9044 & 1 other INTRON CG13999
3R	8501292	3R_8501292_DEL [dm3] 3R_12675570_DEL [dm6]	ATCTG	GAAA	3.596e^-5	0.243	DOWNSTREAM CG43630 & 1 other INTRON CG6188	TF binding site mE1_TFBS_cad
3R	9443686	3R_9443686_INS [dm3] 3R_13617964_INS [dm6]	A	AGTTTCG	3.639e^-5	0.244	EXON CR45680
3R	10139995	3R_10139995_SNP [dm3] 3R_14314273_SNP [dm6]	T	C	3.642e^-5	0.244	UTR_3_PRIME CG31321 UPSTREAM Crz
3R	25519796	3R_25519796_SNP [dm3] 3R_29694074_SNP [dm6]	C	T	3.653e^-5	0.244	INTRON dmrt99B
3L	13257063	3L_13257063_SNP [dm3] 3L_13263963_SNP [dm6]	G	A	3.679e^-5	0.245	INTRON caps	enhancer mE1_CBP_Enhancers
3L	12525869	3L_12525869_SNP [dm3] 3L_12532769_SNP [dm6]	A	T	3.693e^-5	0.245	SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
3L	6293706	3L_6293706_INS [dm3] 3L_6300606_INS [dm6]	T	TAG	3.710e^-5	0.245	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5643354	2L_5643354_DEL [dm3] 2L_5643354_DEL [dm6]	TA	T	3.767e^-5	0.248	INTRON CG31646
2L	12202139	2L_12202139_SNP [dm3] 2L_12202139_SNP [dm6]	C	T	3.780e^-5	0.248	INTRON aret
3L	8628099	3L_8628099_SNP [dm3] 3L_8634999_SNP [dm6]	T	C	3.801e^-5	0.248	SPLICE_SITE_REGION Zasp66 UPSTREAM Cdc6 INTRON Zasp66
2R	7834188	2R_7834188_SNP [dm3] 2R_11946683_SNP [dm6]	A	T	3.838e^-5	0.249	INTRON CG13188
X	19046444	X_19046444_INS [dm3] X_19152411_INS [dm6]	A	AA	3.849e^-5	0.249	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	5955932	2L_5955932_SNP [dm3] 2L_5955932_SNP [dm6]	A	G	3.855e^-5	0.249	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
3R	15891271	3R_15891271_SNP [dm3] 3R_20065549_SNP [dm6]	A	G	3.875e^-5	0.25	INTERGENIC
3L	17744251	3L_17744251_SNP [dm3] 3L_17751151_SNP [dm6]	C	T	3.928e^-5	0.252	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	13190828	3L_13190828_SNP [dm3] 3L_13197728_SNP [dm6]	T	C	3.946e^-5	0.252	INTERGENIC	silencer mE1_HDAC_PRE
2L	17597830	2L_17597830_DEL [dm3] 2L_17597830_DEL [dm6]	TAT	A	3.953e^-5	0.252	INTRON Sytalpha
2L	15182170	2L_15182170_INS [dm3] 2L_15182170_INS [dm6]	T	TCTT	3.960e^-5	0.252	INTRON CG4168
3R	15884263	3R_15884263_SNP [dm3] 3R_20058541_SNP [dm6]	C	G	4.005e^-5	0.253	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	6896223	3L_6896223_DEL [dm3] 3L_6903123_DEL [dm6]	TCCTTCGT	T	4.012e^-5	0.253	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15885852	3R_15885852_SNP [dm3] 3R_20060130_SNP [dm6]	T	C	4.020e^-5	0.253	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
3R	15895249	3R_15895249_SNP [dm3] 3R_20069527_SNP [dm6]	C	T	4.059e^-5	0.254	INTERGENIC
3L	14319643	3L_14319643_SNP [dm3] 3L_14326543_SNP [dm6]	A	G	4.088e^-5	0.254	UPSTREAM CR45025 INTRON fz
2L	12289242	2L_12289242_SNP [dm3] 2L_12289242_SNP [dm6]	T	C	4.093e^-5	0.254	UTR_5_PRIME aret INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16225053	3R_16225053_SNP [dm3] 3R_20399331_SNP [dm6]	T	A	4.102e^-5	0.254	DOWNSTREAM Gfrl INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14910858	3L_14910858_SNP [dm3] 3L_14917758_SNP [dm6]	G	T	4.104e^-5	0.254	INTRON DCX-EMAP
X	14103027	X_14103027_SNP [dm3] X_14208994_SNP [dm6]	T	C	4.126e^-5	0.254	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9495491	3L_9495491_INS [dm3] 3L_9502391_INS [dm6]	T	TAAGGTTT	4.135e^-5	0.254	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
X	11097722	X_11097722_SNP [dm3] X_11203689_SNP [dm6]	G	T	4.140e^-5	0.254	DOWNSTREAM CG11106 INTERGENIC
2R	1141073	2R_1141073_INS [dm3] 2R_5253568_INS [dm6]	G	GG	4.155e^-5	0.254	UPSTREAM CR41443 INTERGENIC
3R	15887087	3R_15887087_SNP [dm3] 3R_20061365_SNP [dm6]	A	G	4.232e^-5	0.258	INTERGENIC
X	12160292	X_12160292_SNP [dm3] X_12266259_SNP [dm6]	C	A	4.294e^-5	0.261	INTRON Ten-a	TF binding site mE1_TFBS_inv
3L	16432118	3L_16432118_SNP [dm3] 3L_16439018_SNP [dm6]	C	G	4.311e^-5	0.261	INTRON CG33158 & 1 other
3L	8584373	3L_8584373_SNP [dm3] 3L_8591273_SNP [dm6]	G	A	4.340e^-5	0.262	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9832820	2L_9832820_INS [dm3] 2L_9832820_INS [dm6]	G	GC	4.370e^-5	0.263	INTRON nAChRalpha6
3R	15826705	3R_15826705_SNP [dm3] 3R_20000983_SNP [dm6]	C	T	4.386e^-5	0.263	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	19859344	2L_19859344_DEL [dm3] 2L_19859344_DEL [dm6]	TG	T	4.442e^-5	0.265	INTRON sick
3R	26472490	3R_26472490_SNP [dm3] 3R_30646768_SNP [dm6]	G	A	4.450e^-5	0.265	UPSTREAM CG31013 INTRON PH4alphaPV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2283044	3L_2283044_DEL [dm3] 3L_2283044_DEL [dm6]	GCCGTCACGAATTTTCATCG...	G	4.469e^-5	0.265	UTR_5_PRIME MsR2 INTRON MsR2
3R	9164247	3R_9164247_DEL [dm3] 3R_13338525_DEL [dm6]	CG	C	4.488e^-5	0.266	UTR_5_PRIME PK2-R1
3R	15882815	3R_15882815_SNP [dm3] 3R_20057093_SNP [dm6]	G	A	4.524e^-5	0.267	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9831617	2L_9831617_SNP [dm3] 2L_9831617_SNP [dm6]	T	A	4.546e^-5	0.267	INTRON nAChRalpha6
3R	18103203	3R_18103203_SNP [dm3] 3R_22277481_SNP [dm6]	G	T	4.558e^-5	0.267	INTRON SKIP
X	7266837	X_7266837_DEL [dm3] X_7372804_DEL [dm6]	AA	A	4.612e^-5	0.269	INTRON CG1677 & 1 other
3L	16634706	3L_16634706_DEL [dm3] 3L_16641606_DEL [dm6]	AA	G	4.643e^-5	0.27	INTRON Abl
3R	10657816	3R_10657816_SNP [dm3] 3R_14832094_SNP [dm6]	C	G	4.667e^-5	0.271	INTRON btsz
3R	15826465	3R_15826465_SNP [dm3] 3R_20000743_SNP [dm6]	A	T	4.717e^-5	0.273	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	14798641	2L_14798641_SNP [dm3] 2L_14798641_SNP [dm6]	T	G	4.740e^-5	0.274	INTERGENIC
3R	15822188	3R_15822188_SNP [dm3] 3R_19996466_SNP [dm6]	A	G	4.755e^-5	0.274	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21050757	2L_21050757_DEL [dm3] 2L_21050757_DEL [dm6]	TTATAGAT	T	4.769e^-5	0.274	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15610598	3L_15610598_SNP [dm3] 3L_15617498_SNP [dm6]	A	G	4.832e^-5	0.276	INTRON comm3
3R	15813428	3R_15813428_SNP [dm3] 3R_19987706_SNP [dm6]	A	T	4.855e^-5	0.276	INTRON Hs6st
2L	12209977	2L_12209977_SNP [dm3] 2L_12209977_SNP [dm6]	G	C	4.856e^-5	0.276	UTR_3_PRIME CG31759 INTRON aret
2L	9166470	2L_9166470_SNP [dm3] 2L_9166470_SNP [dm6]	G	A	4.899e^-5	0.276	UTR_5_PRIME CG9586 UPSTREAM tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15815618	3R_15815618_SNP [dm3] 3R_19989896_SNP [dm6]	G	A	4.906e^-5	0.276	INTRON Hs6st
3L	8568403	3L_8568403_SNP [dm3] 3L_8575303_SNP [dm6]	G	T	4.924e^-5	0.276	NON_SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14219632	3L_14219632_DEL [dm3] 3L_14226532_DEL [dm6]	CTA	G	4.932e^-5	0.276	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	15091274	2L_15091274_DEL [dm3] 2L_15091274_DEL [dm6]	TAGCTCTT	T	4.949e^-5	0.276	INTRON CG15270
3R	25277175	3R_25277175_SNP [dm3] 3R_29451453_SNP [dm6]	A	T	4.963e^-5	0.276	INTRON Ptp99A
3R	11850104	3R_11850104_SNP [dm3] 3R_16024382_SNP [dm6]	T	C	4.968e^-5	0.276	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16737972	2L_16737972_SNP [dm3] 2L_16737972_SNP [dm6]	G	A	4.974e^-5	0.276	SYNONYMOUS_CODING glu UPSTREAM ChLD3	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	14262496	X_14262496_SNP [dm3] X_14368463_SNP [dm6]	C	T	4.999e^-5	0.276	INTRON dpr8
X	19785709	X_19785709_SNP [dm3] X_19891676_SNP [dm6]	T	A	5.000e^-5	0.276	UPSTREAM Hers INTRON Hers
3R	15882599	3R_15882599_SNP [dm3] 3R_20056877_SNP [dm6]	C	A	5.023e^-5	0.276	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22034295	3R_22034295_SNP [dm3] 3R_26208573_SNP [dm6]	T	C	5.073e^-5	0.278	INTRON CR44320
2R	6437763	2R_6437763_SNP [dm3] 2R_10550258_SNP [dm6]	G	A	5.094e^-5	0.278	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	15877371	3R_15877371_SNP [dm3] 3R_20051649_SNP [dm6]	T	A	5.107e^-5	0.278	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15880408	3R_15880408_INS [dm3] 3R_20054686_INS [dm6]	A	AATAAATAAA	5.169e^-5	0.281	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5955941	2L_5955941_SNP [dm3] 2L_5955941_SNP [dm6]	G	T	5.299e^-5	0.286	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
3R	595478	3R_595478_SNP [dm3] 3R_4769756_SNP [dm6]	C	T	5.310e^-5	0.286	UPSTREAM CG44098 INTRON atms & 1 other
2L	4256555	2L_4256555_DEL [dm3] 2L_4256555_DEL [dm6]	TT	T	5.315e^-5	0.286	UPSTREAM CR45294 & 1 other DOWNSTREAM CR45296 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
X	20748514	X_20748514_SNP [dm3] X_20877487_SNP [dm6]	T	A	5.323e^-5	0.286	INTRON shakB
3L	16807371	3L_16807371_SNP [dm3] 3L_16814271_SNP [dm6]	G	T	5.352e^-5	0.286	INTRON nudC & 1 other
3L	3911936	3L_3911936_SNP [dm3] 3L_3911936_SNP [dm6]	T	C	5.388e^-5	0.286	INTRON Eip63F-1
3L	7764196	3L_7764196_SNP [dm3] 3L_7771096_SNP [dm6]	G	A	5.478e^-5	0.286	INTRON Clk	regulatory region REDfly_CRMs
3R	15877830	3R_15877830_SNP [dm3] 3R_20052108_SNP [dm6]	A	C	5.491e^-5	0.286	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	19465064	3R_19465064_SNP [dm3] 3R_23639342_SNP [dm6]	A	G	5.502e^-5	0.286	INTRON CG31145	TF binding site mE1_TFBS_inv
3R	10626662	3R_10626662_INS [dm3] 3R_14800940_INS [dm6]	A	AA	5.503e^-5	0.286	UTR_3_PRIME CG14856 UPSTREAM CG14857
3L	4542317	3L_4542317_SNP [dm3] 3L_4542317_SNP [dm6]	A	G	5.526e^-5	0.286	UTR_5_PRIME CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2285041	3L_2285041_INS [dm3] 3L_2285041_INS [dm6]	C	CATCTTTTTTTTTTTTCA...	5.552e^-5	0.286	INTRON MsR2
3L	8632228	3L_8632228_SNP [dm3] 3L_8639128_SNP [dm6]	G	A	5.560e^-5	0.286	DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	15921932	3R_15921932_SNP [dm3] 3R_20096210_SNP [dm6]	T	A	5.577e^-5	0.286	INTERGENIC
3L	5977951	3L_5977951_SNP [dm3] 3L_5984851_SNP [dm6]	A	C	5.625e^-5	0.286	UPSTREAM CR45439 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3R	16762016	3R_16762016_SNP [dm3] 3R_20936294_SNP [dm6]	T	C	5.665e^-5	0.286	INTRON CG31191
3R	14974159	3R_14974159_SNP [dm3] 3R_19148437_SNP [dm6]	G	A	5.681e^-5	0.286	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	16555357	3L_16555357_SNP [dm3] 3L_16562257_SNP [dm6]	A	T	5.682e^-5	0.286	INTERGENIC
X	13995359	X_13995359_INS [dm3] X_14101326_INS [dm6]	T	TT	5.682e^-5	0.286	INTERGENIC
3L	10143402	3L_10143402_SNP [dm3] 3L_10150302_SNP [dm6]	G	C	5.686e^-5	0.286	INTRON dpr10
3L	9620082	3L_9620082_SNP [dm3] 3L_9626982_SNP [dm6]	T	C	5.705e^-5	0.286	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b
2L	12280872	2L_12280872_SNP [dm3] 2L_12280872_SNP [dm6]	C	T	5.717e^-5	0.286	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6434248	X_6434248_INS [dm3] X_6540215_INS [dm6]	T	TTTCACT	5.724e^-5	0.286	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5911226	2L_5911226_SNP [dm3] 2L_5911226_SNP [dm6]	C	G	5.727e^-5	0.286	SYNONYMOUS_CODING bchs UPSTREAM CG14000
2L	7302257	2L_7302257_SNP [dm3] 2L_7302257_SNP [dm6]	T	G	5.732e^-5	0.286	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	2832091	2R_2832091_SNP [dm3] 2R_6944586_SNP [dm6]	T	C	5.774e^-5	0.286	UPSTREAM CheB42b DOWNSTREAM CheB42c INTRON mim
2R	7332451	2R_7332451_SNP [dm3] 2R_11444946_SNP [dm6]	A	G	5.780e^-5	0.286	INTRON qvr
3R	24803928	3R_24803928_SNP [dm3] 3R_28978206_SNP [dm6]	G	A	5.787e^-5	0.286	INTERGENIC
3R	15879811	3R_15879811_SNP [dm3] 3R_20054089_SNP [dm6]	A	G	5.787e^-5	0.286	UTR_5_PRIME CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14670103	3L_14670103_SNP [dm3] 3L_14677003_SNP [dm6]	A	T	5.802e^-5	0.286	INTRON ome & 1 other
2L	2729231	2L_2729231_SNP [dm3] 2L_2729231_SNP [dm6]	G	A	5.845e^-5	0.286	UPSTREAM CG31689 INTRON CG31689
3L	3353351	3L_3353351_SNP [dm3] 3L_3353351_SNP [dm6]	C	A	5.849e^-5	0.286	INTRON kst	TF binding site mE1_TFBS_cad
3R	15949877	3R_15949877_SNP [dm3] 3R_20124155_SNP [dm6]	G	A	5.879e^-5	0.286	INTERGENIC
3R	16232381	3R_16232381_DEL [dm3] 3R_20406659_DEL [dm6]	TC	T	5.879e^-5	0.286	UTR_3_PRIME CG4335 INTRON Gfrl	TF binding site mE1_TFBS_inv
3L	9620003	3L_9620003_SNP [dm3] 3L_9626903_SNP [dm6]	G	A	5.890e^-5	0.286	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
3L	12056313	3L_12056313_DEL [dm3] 3L_12063213_DEL [dm6]	CC	C	5.914e^-5	0.286	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12275284	2L_12275284_INS [dm3] 2L_12275284_INS [dm6]	A	AAAA	5.921e^-5	0.286	INTRON aret
X	19653387	X_19653387_INS [dm3] X_19759354_INS [dm6]	T	TC	5.931e^-5	0.286	UTR_3_PRIME CG12702 DOWNSTREAM Pmp70
3R	15887105	3R_15887105_SNP [dm3] 3R_20061383_SNP [dm6]	T	C	5.950e^-5	0.286	INTERGENIC
2L	2937113	2L_2937113_SNP [dm3] 2L_2937113_SNP [dm6]	G	A	5.952e^-5	0.286	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14803636	2L_14803636_SNP [dm3] 2L_14803636_SNP [dm6]	T	C	5.965e^-5	0.286	DOWNSTREAM CG33308 INTERGENIC
3L	22971988	3L_22971988_SNP [dm3] 3L_22978888_SNP [dm6]	T	G	5.972e^-5	0.286	INTERGENIC
2L	8486726	2L_8486726_SNP [dm3] 2L_8486726_SNP [dm6]	T	C	5.982e^-5	0.286	SYNONYMOUS_CODING d DOWNSTREAM unsRNA:d-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13186655	3L_13186655_SNP [dm3] 3L_13193555_SNP [dm6]	A	C	5.984e^-5	0.286	INTERGENIC
3L	16560477	3L_16560477_DEL [dm3] 3L_16567377_DEL [dm6]	GT	G	6.007e^-5	0.286	DOWNSTREAM CG43206 INTRON Mipp1
X	12782900	X_12782900_INS [dm3] X_12888867_INS [dm6]	T	TT	6.009e^-5	0.286	INTRON Pde9
3R	16385910	3R_16385910_SNP [dm3] 3R_20560188_SNP [dm6]	C	T	6.010e^-5	0.286	UTR_5_PRIME CG15922 UPSTREAM CG5191 & 1 other DOWNSTREAM CG5180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	11097675	X_11097675_SNP [dm3] X_11203642_SNP [dm6]	A	T	6.028e^-5	0.286	DOWNSTREAM CG11106 INTERGENIC
X	11097681	X_11097681_SNP [dm3] X_11203648_SNP [dm6]	T	C	6.042e^-5	0.286	DOWNSTREAM CG11106 INTERGENIC
3L	15664459	3L_15664459_SNP [dm3] 3L_15671359_SNP [dm6]	T	G	6.060e^-5	0.286	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	10141853	3L_10141853_SNP [dm3] 3L_10148753_SNP [dm6]	A	T	6.074e^-5	0.286	UTR_3_PRIME dpr10
3R	15873669	3R_15873669_SNP [dm3] 3R_20047947_SNP [dm6]	T	C	6.077e^-5	0.286	SYNONYMOUS_CODING CG33934 UTR_3_PRIME Indy-2 INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	5181336	3L_5181336_SNP [dm3] 3L_5188236_SNP [dm6]	C	T	6.077e^-5	0.286	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1011149	3L_1011149_SNP [dm3] 3L_1011149_SNP [dm6]	T	A	6.080e^-5	0.286	INTRON trio
3L	12054364	3L_12054364_SNP [dm3] 3L_12061264_SNP [dm6]	C	G	6.107e^-5	0.286	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19362994	3L_19362994_DEL [dm3] 3L_19369894_DEL [dm6]	CCGACGAAAAGCTTTCCACT...	GT	6.149e^-5	0.288	INTRON CG32206
3R	9028810	3R_9028810_SNP [dm3] 3R_13203088_SNP [dm6]	A	G	6.176e^-5	0.288	INTERGENIC
3L	12358095	3L_12358095_SNP [dm3] 3L_12364995_SNP [dm6]	T	A	6.194e^-5	0.288	INTERGENIC
X	11086466	X_11086466_SNP [dm3] X_11192433_SNP [dm6]	A	C	6.221e^-5	0.289	UPSTREAM CR44765 INTERGENIC
3R	16019750	3R_16019750_SNP [dm3] 3R_20194028_SNP [dm6]	G	A	6.259e^-5	0.289	INTERGENIC
2L	20962196	2L_20962196_SNP [dm3] 2L_20962196_SNP [dm6]	T	C	6.263e^-5	0.289	INTERGENIC
3L	15490763	3L_15490763_SNP [dm3] 3L_15497663_SNP [dm6]	T	G	6.264e^-5	0.289	NON_SYNONYMOUS_CODING CG13455 UPSTREAM CG7276	TF binding site mE1_TFBS_cad
3R	15920696	3R_15920696_SNP [dm3] 3R_20094974_SNP [dm6]	G	T	6.278e^-5	0.289	INTERGENIC
2R	10715614	2R_10715614_SNP [dm3] 2R_14828109_SNP [dm6]	C	T	6.328e^-5	0.29	INTERGENIC
2L	9745874	2L_9745874_DEL [dm3] 2L_9745874_DEL [dm6]	AA	A	6.404e^-5	0.292	INTRON Nckx30C
2L	4956397	2L_4956397_DEL [dm3] 2L_4956397_DEL [dm6]	CAT	C	6.409e^-5	0.292	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3731756	X_3731756_DEL [dm3] X_3837723_DEL [dm6]	TGTTAG	T	6.418e^-5	0.292	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14785872	3R_14785872_SNP [dm3] 3R_18960150_SNP [dm6]	C	G	6.435e^-5	0.292	INTRON CG42613 & 1 other
3R	11721982	3R_11721982_INS [dm3] 3R_15896260_INS [dm6]	G	GGCTG	6.461e^-5	0.292	UPSTREAM CG14877 DOWNSTREAM glob1 INTERGENIC
3L	13190156	3L_13190156_DEL [dm3] 3L_13197056_DEL [dm6]	AGAATGA	A	6.476e^-5	0.292	INTERGENIC
X	20303882	X_20303882_SNP [dm3] X_20432855_SNP [dm6]	C	T	6.479e^-5	0.292	NON_SYNONYMOUS_CODING mal
3R	15424493	3R_15424493_SNP [dm3] 3R_19598771_SNP [dm6]	C	T	6.488e^-5	0.292	INTRON Cpr92A
X	21122612	X_21122612_SNP [dm3] X_21251585_SNP [dm6]	T	C	6.520e^-5	0.293	UPSTREAM CG1722 INTRON CG32521
3L	8314752	3L_8314752_SNP [dm3] 3L_8321652_SNP [dm6]	G	C	6.544e^-5	0.293	INTRON CG13670
2L	12301408	2L_12301408_SNP [dm3] 2L_12301408_SNP [dm6]	G	A	6.559e^-5	0.293	INTRON aret
2L	14798597	2L_14798597_SNP [dm3] 2L_14798597_SNP [dm6]	A	G	6.579e^-5	0.293	INTERGENIC
2R	3657739	2R_3657739_INS [dm3] 2R_7770234_INS [dm6]	A	ATGTAGATACATTCA...	6.591e^-5	0.293	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10776821	3L_10776821_SNP [dm3] 3L_10783721_SNP [dm6]	T	A	6.642e^-5	0.293	UPSTREAM CR44544 INTERGENIC	TF binding site mE1_TFBS_inv
3R	15804835	3R_15804835_SNP [dm3] 3R_19979113_SNP [dm6]	A	G	6.654e^-5	0.293	UTR_3_PRIME CG31213 INTRON Hs6st	TF binding site BDTNP1_TFBS_dl
X	7488021	X_7488021_DEL [dm3] X_7593988_DEL [dm6]	TGT	T	6.660e^-5	0.293	INTERGENIC	regulatory region REDfly_CRMs
3L	3911884	3L_3911884_SNP [dm3] 3L_3911884_SNP [dm6]	T	A	6.664e^-5	0.293	UTR_3_PRIME Eip63F-1
2L	10036537	2L_10036537_SNP [dm3] 2L_10036537_SNP [dm6]	G	A	6.681e^-5	0.294	INTRON obst-B
2R	18088573	2R_18088573_SNP [dm3] 2R_22201068_SNP [dm6]	G	A	6.768e^-5	0.294	UPSTREAM CR45376 INTRON Swim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7545876	3L_7545876_SNP [dm3] 3L_7552776_SNP [dm6]	G	A	6.780e^-5	0.294	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13643345	2L_13643345_SNP [dm3] 2L_13643345_SNP [dm6]	T	C	6.785e^-5	0.294	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
3R	14718264	3R_14718264_SNP [dm3] 3R_18892542_SNP [dm6]	G	C	6.787e^-5	0.294	INTERGENIC
3R	26466303	3R_26466303_SNP [dm3] 3R_30640581_SNP [dm6]	G	A	6.820e^-5	0.294	INTERGENIC
3L	9619931	3L_9619931_SNP [dm3] 3L_9626831_SNP [dm6]	G	A	6.822e^-5	0.294	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
X	11097689	X_11097689_DEL [dm3] X_11203656_DEL [dm6]	TATTTTAATTGATTAAGATA...	T	6.825e^-5	0.294	DOWNSTREAM CG11106 INTERGENIC
2L	21050474	2L_21050474_SNP [dm3] 2L_21050474_SNP [dm6]	T	G	6.835e^-5	0.294	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9166421	2L_9166421_SNP [dm3] 2L_9166421_SNP [dm6]	G	T	6.849e^-5	0.294	UTR_5_PRIME CG9586 UPSTREAM tai DOWNSTREAM CG13108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10128934	3R_10128934_SNP [dm3] 3R_14303212_SNP [dm6]	A	T	6.857e^-5	0.294	NON_SYNONYMOUS_CODING CG3259 DOWNSTREAM CG12207	TF binding site mE1_TFBS_cad
3L	14455651	3L_14455651_SNP [dm3] 3L_14462551_SNP [dm6]	T	C	6.866e^-5	0.294	INTRON bbg
3R	15964353	3R_15964353_SNP [dm3] 3R_20138631_SNP [dm6]	G	A	6.919e^-5	0.294	DOWNSTREAM CR42836 INTERGENIC
X	7266002	X_7266002_SNP [dm3] X_7371969_SNP [dm6]	C	T	6.927e^-5	0.294	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16555369	3L_16555369_SNP [dm3] 3L_16562269_SNP [dm6]	C	T	6.936e^-5	0.294	INTERGENIC
3L	6317096	3L_6317096_SNP [dm3] 3L_6323996_SNP [dm6]	A	T	6.942e^-5	0.294	INTERGENIC
3R	10312474	3R_10312474_SNP [dm3] 3R_14486752_SNP [dm6]	T	C	6.950e^-5	0.294	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20851901	3R_20851901_SNP [dm3] 3R_25026179_SNP [dm6]	A	G	6.964e^-5	0.294	SYNONYMOUS_CODING Hr96	TF binding site BDTNP1_TFBS_sna
3L	14330069	3L_14330069_SNP [dm3] 3L_14336969_SNP [dm6]	A	G	7.032e^-5	0.295	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12285132	2L_12285132_SNP [dm3] 2L_12285132_SNP [dm6]	A	G	7.040e^-5	0.295	INTRON aret
3L	7405603	3L_7405603_DEL [dm3] 3L_7412503_DEL [dm6]	TT	T	7.080e^-5	0.295	INTERGENIC
X	11097716	X_11097716_SNP [dm3] X_11203683_SNP [dm6]	T	C	7.084e^-5	0.295	DOWNSTREAM CG11106 INTERGENIC
X	11479401	X_11479401_SNP [dm3] X_11585368_SNP [dm6]	G	A	7.109e^-5	0.295	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9166429	2L_9166429_SNP [dm3] 2L_9166429_SNP [dm6]	T	C	7.119e^-5	0.295	UTR_5_PRIME CG9586 UPSTREAM tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20851844	3R_20851844_SNP [dm3] 3R_25026122_SNP [dm6]	G	A	7.120e^-5	0.295	SYNONYMOUS_CODING Hr96	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	5717698	3L_5717698_DEL [dm3] 3L_5724598_DEL [dm6]	AA	A	7.124e^-5	0.295	INTRON sif
X	10613202	X_10613202_DEL [dm3] X_10719169_DEL [dm6]	CTTGACAATTTAATTTAAAC...	C	7.151e^-5	0.295	INTRON CG32676
3R	15877835	3R_15877835_SNP [dm3] 3R_20052113_SNP [dm6]	A	T	7.154e^-5	0.295	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	18730258	3L_18730258_SNP [dm3] 3L_18737158_SNP [dm6]	G	A	7.154e^-5	0.295	INTERGENIC
3R	15822199	3R_15822199_SNP [dm3] 3R_19996477_SNP [dm6]	C	T	7.191e^-5	0.295	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13257068	3L_13257068_SNP [dm3] 3L_13263968_SNP [dm6]	T	C	7.208e^-5	0.295	INTRON caps	enhancer mE1_CBP_Enhancers
3L	20631022	3L_20631022_SNP [dm3] 3L_20637922_SNP [dm6]	G	A	7.208e^-5	0.295	NON_SYNONYMOUS_CODING CG13251	TF binding site mE1_TFBS_chinmo
3L	12109679	3L_12109679_SNP [dm3] 3L_12116579_SNP [dm6]	T	A	7.226e^-5	0.295	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4144658	3R_4144658_DEL [dm3] 3R_8318936_DEL [dm6]	TT	T	7.243e^-5	0.295	UTR_3_PRIME Ctr1B DOWNSTREAM CR45215 & 1 other
3L	9619980	3L_9619980_SNP [dm3] 3L_9626880_SNP [dm6]	C	A	7.278e^-5	0.296	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
2L	7222507	2L_7222507_SNP [dm3] 2L_7222507_SNP [dm6]	C	T	7.287e^-5	0.296	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12289447	2L_12289447_SNP [dm3] 2L_12289447_SNP [dm6]	T	G	7.346e^-5	0.297	INTRON aret
3R	15877832	3R_15877832_SNP [dm3] 3R_20052110_SNP [dm6]	A	C	7.348e^-5	0.297	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15827876	3R_15827876_SNP [dm3] 3R_20002154_SNP [dm6]	T	C	7.400e^-5	0.297	INTRON Hs6st	TF binding site mE1_TFBS_cad
3R	13975677	3R_13975677_SNP [dm3] 3R_18149955_SNP [dm6]	G	C	7.403e^-5	0.297	INTERGENIC
3R	4134760	3R_4134760_SNP [dm3] 3R_8309038_SNP [dm6]	A	G	7.414e^-5	0.297	SYNONYMOUS_CODING CG11693 UPSTREAM mir-4918 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9731943	3L_9731943_SNP [dm3] 3L_9738843_SNP [dm6]	A	C	7.443e^-5	0.297	INTRON CG42268	TF binding site mE1_TFBS_cad
3L	10523798	3L_10523798_INS [dm3] 3L_10530698_INS [dm6]	A	AA	7.444e^-5	0.297	INTRON A2bp1
3R	19465071	3R_19465071_SNP [dm3] 3R_23639349_SNP [dm6]	T	A	7.449e^-5	0.297	INTRON CG31145	TF binding site mE1_TFBS_inv
2L	7222594	2L_7222594_SNP [dm3] 2L_7222594_SNP [dm6]	A	G	7.598e^-5	0.301	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6175206	2R_6175206_INS [dm3] 2R_10287701_INS [dm6]	A	AA	7.608e^-5	0.301	UPSTREAM CAP INTRON CAP
3R	15895164	3R_15895164_SNP [dm3] 3R_20069442_SNP [dm6]	C	A	7.612e^-5	0.301	INTERGENIC
3L	15262366	3L_15262366_SNP [dm3] 3L_15269266_SNP [dm6]	A	G	7.630e^-5	0.301	INTERGENIC
3R	15949867	3R_15949867_SNP [dm3] 3R_20124145_SNP [dm6]	C	A	7.653e^-5	0.301	INTERGENIC
3R	15246130	3R_15246130_SNP [dm3] 3R_19420408_SNP [dm6]	T	G	7.662e^-5	0.301	INTRON CG31221
3L	17911035	3L_17911035_SNP [dm3] 3L_17917935_SNP [dm6]	G	A	7.697e^-5	0.301	INTERGENIC
3L	5757197	3L_5757197_DEL [dm3] 3L_5764097_DEL [dm6]	CA	C	7.722e^-5	0.301	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837b & 2 others INTRON CG10576	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	10628789	3R_10628789_SNP [dm3] 3R_14803067_SNP [dm6]	C	T	7.723e^-5	0.301	SYNONYMOUS_CODING CG14857
3R	15166684	3R_15166684_DEL [dm3] 3R_19340962_DEL [dm6]	CCTTGGTC	C	7.740e^-5	0.301	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	14716420	3R_14716420_SNP [dm3] 3R_18890698_SNP [dm6]	C	A	7.760e^-5	0.301	INTERGENIC
3L	20629027	3L_20629027_SNP [dm3] 3L_20635927_SNP [dm6]	T	C	7.766e^-5	0.301	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11424573	3R_11424573_SNP [dm3] 3R_15598851_SNP [dm6]	G	T	7.797e^-5	0.301	INTERGENIC
3L	10392056	3L_10392056_SNP [dm3] 3L_10398956_SNP [dm6]	G	C	7.804e^-5	0.301	INTERGENIC
2L	21913638	2L_21913638_SNP [dm3] 2L_21913638_SNP [dm6]	A	G	7.823e^-5	0.301	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
3L	17025857	3L_17025857_DEL [dm3] 3L_17032757_DEL [dm6]	CTC	C	7.823e^-5	0.301	UPSTREAM Ilp8 & 1 other DOWNSTREAM CR43250 INTERGENIC	TF binding site mE1_TFBS_Trl
X	11097725	X_11097725_SNP [dm3] X_11203692_SNP [dm6]	C	T	7.828e^-5	0.301	DOWNSTREAM CG11106 INTERGENIC
3R	26473343	3R_26473343_SNP [dm3] 3R_30647621_SNP [dm6]	C	T	7.829e^-5	0.301	INTRON PH4alphaPV
2R	14983874	2R_14983874_DEL [dm3] 2R_19096369_DEL [dm6]	TT	T	7.845e^-5	0.301	UPSTREAM Ir56a INTRON 5-HT1A
3R	15922801	3R_15922801_SNP [dm3] 3R_20097079_SNP [dm6]	C	T	7.856e^-5	0.301	INTERGENIC
3L	8314829	3L_8314829_SNP [dm3] 3L_8321729_SNP [dm6]	C	T	7.885e^-5	0.301	INTRON CG13670
3R	6283368	3R_6283368_SNP [dm3] 3R_10457646_SNP [dm6]	T	C	7.909e^-5	0.301	INTERGENIC
3R	9552684	3R_9552684_SNP [dm3] 3R_13726962_SNP [dm6]	G	A	7.918e^-5	0.301	INTRON CG34383
X	16679135	X_16679135_DEL [dm3] X_16785102_DEL [dm6]	AGAGGTTC	T	7.942e^-5	0.301	DOWNSTREAM CG9609 & 1 other INTERGENIC
3R	9552679	3R_9552679_SNP [dm3] 3R_13726957_SNP [dm6]	G	C	7.956e^-5	0.301	INTRON CG34383
3L	14087020	3L_14087020_SNP [dm3] 3L_14093920_SNP [dm6]	G	T	7.979e^-5	0.301	DOWNSTREAM Fbp1 INTERGENIC
3R	7628824	3R_7628824_DEL [dm3] 3R_11803102_DEL [dm6]	AGTAAATAGGTA...	T	7.996e^-5	0.301	INTRON ClC-a
2L	7728228	2L_7728228_DEL [dm3] 2L_7728228_DEL [dm6]	TG	A	8.007e^-5	0.301	SPLICE_SITE_REGION CG13796 INTRON CG13796
X	15429581	X_15429581_SNP [dm3] X_15535548_SNP [dm6]	C	T	8.007e^-5	0.301	INTRON Ac13E
2L	6715201	2L_6715201_DEL [dm3] 2L_6715201_DEL [dm6]	TT	T	8.021e^-5	0.301	UTR_5_PRIME AkhR INTRON AkhR
X	9166665	X_9166665_SNP [dm3] X_9272632_SNP [dm6]	C	G	8.046e^-5	0.301	UPSTREAM CG16892 INTRON Cfp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10137596	2L_10137596_DEL [dm3] 2L_10137596_DEL [dm6]	ATAAAGTTGA	A	8.086e^-5	0.301	INTRON CG44153
3R	10657946	3R_10657946_SNP [dm3] 3R_14832224_SNP [dm6]	G	T	8.090e^-5	0.301	INTRON btsz
3L	9620178	3L_9620178_SNP [dm3] 3L_9627078_SNP [dm6]	T	C	8.097e^-5	0.301	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b
2L	6638302	2L_6638302_SNP [dm3] 2L_6638302_SNP [dm6]	T	G	8.103e^-5	0.301	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_chinmo
2R	2834976	2R_2834976_INS [dm3] 2R_6947471_INS [dm6]	G	GACATGG	8.169e^-5	0.303	UPSTREAM tRNA:K2:42Ea DOWNSTREAM tRNA:K2:42Eb & 1 other INTRON mim & 1 other
X	5412248	X_5412248_SNP [dm3] X_5518215_SNP [dm6]	T	A	8.195e^-5	0.303	UTR_3_PRIME CG12730 UPSTREAM CR45518	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	11467778	3L_11467778_DEL [dm3] 3L_11474678_DEL [dm6]	CAAAGACACTAGTTATTCTA...	C	8.213e^-5	0.303	UPSTREAM Vha16-2 DOWNSTREAM Vha16-3 INTERGENIC	transposable element FlyBase
3R	18125524	3R_18125524_DEL [dm3] 3R_22299802_DEL [dm6]	AA	T	8.287e^-5	0.305	UTR_5_PRIME CG7084
3R	21811828	3R_21811828_DEL [dm3] 3R_25986106_DEL [dm6]	AA	A	8.299e^-5	0.305	INTRON Nf1
2L	10510871	2L_10510871_SNP [dm3] 2L_10510871_SNP [dm6]	G	A	8.305e^-5	0.305	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other
X	11924940	X_11924940_SNP [dm3] X_12030907_SNP [dm6]	C	G	8.367e^-5	0.306	NON_SYNONYMOUS_CODING Cyp311a1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8443755	3R_8443755_INS [dm3] 3R_12618033_INS [dm6]	T	TCTAATCTATA...	8.379e^-5	0.306	DOWNSTREAM CR44942 INTERGENIC
2L	5820614	2L_5820614_SNP [dm3] 2L_5820614_SNP [dm6]	C	T	8.382e^-5	0.306	INTERGENIC
3R	16113474	3R_16113474_SNP [dm3] 3R_20287752_SNP [dm6]	A	G	8.425e^-5	0.307	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11098524	X_11098524_SNP [dm3] X_11204491_SNP [dm6]	T	C	8.474e^-5	0.308	INTERGENIC
2R	10608986	2R_10608986_SNP [dm3] 2R_14721481_SNP [dm6]	T	A	8.500e^-5	0.308	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7722961	2L_7722961_SNP [dm3] 2L_7722961_SNP [dm6]	A	C	8.511e^-5	0.308	UPSTREAM CG13794 DOWNSTREAM CG13795 INTERGENIC
3R	15880753	3R_15880753_SNP [dm3] 3R_20055031_SNP [dm6]	A	G	8.531e^-5	0.308	UPSTREAM CG17193 INTRON CG17193
3R	15888947	3R_15888947_SNP [dm3] 3R_20063225_SNP [dm6]	C	T	8.563e^-5	0.309	INTERGENIC
3L	9619859	3L_9619859_SNP [dm3] 3L_9626759_SNP [dm6]	C	T	8.588e^-5	0.309	SYNONYMOUS_CODING CG3335 DOWNSTREAM Or67b	TF binding site mE1_TFBS_inv
3L	13534493	3L_13534493_SNP [dm3] 3L_13541393_SNP [dm6]	G	A	8.639e^-5	0.31	INTRON bru-3
3R	10854228	3R_10854228_DEL [dm3] 3R_15028506_DEL [dm6]	AAGCAGTCCAA...	A	8.647e^-5	0.31	INTERGENIC
3L	5291574	3L_5291574_MNP [dm3] 3L_5298474_MNP [dm6]	TTC	GCT	8.754e^-5	0.313	INTERGENIC
2L	5954517	2L_5954517_SNP [dm3] 2L_5954517_SNP [dm6]	T	A	8.792e^-5	0.314	DOWNSTREAM CG13999 INTRON CG9044	TF binding site mE1_TFBS_inv
2L	9661882	2L_9661882_SNP [dm3] 2L_9661882_SNP [dm6]	T	G	8.804e^-5	0.314	INTERGENIC
2L	17415829	2L_17415829_SNP [dm3] 2L_17415829_SNP [dm6]	A	C	8.873e^-5	0.315	SYNONYMOUS_CODING Dif INTRON Dif	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12282364	2L_12282364_SNP [dm3] 2L_12282364_SNP [dm6]	A	G	8.917e^-5	0.315	INTRON aret
3L	7815860	3L_7815860_SNP [dm3] 3L_7822760_SNP [dm6]	G	C	8.920e^-5	0.315	INTRON Pdp1
3R	4146171	3R_4146171_SNP [dm3] 3R_8320449_SNP [dm6]	G	A	8.933e^-5	0.315	SYNONYMOUS_CODING Poxm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7105130	3L_7105130_INS [dm3] 3L_7112030_INS [dm6]	A	ACA	8.952e^-5	0.315	INTRON form3
2R	15396223	2R_15396223_SNP [dm3] 2R_19508718_SNP [dm6]	A	C	8.958e^-5	0.315	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18742677	2R_18742677_SNP [dm3] 2R_22855154_SNP [dm6]	T	G	8.978e^-5	0.315	DOWNSTREAM inaD INTRON RpL23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13186644	3L_13186644_SNP [dm3] 3L_13193544_SNP [dm6]	T	A	8.979e^-5	0.315	INTERGENIC
X	13416104	X_13416104_INS [dm3] X_13522071_INS [dm6]	T	TCACAAGCTTAAGT...	8.987e^-5	0.315	INTRON Neto
2L	20962076	2L_20962076_SNP [dm3] 2L_20962076_SNP [dm6]	G	A	9.020e^-5	0.316	INTERGENIC
3R	15169287	3R_15169287_SNP [dm3] 3R_19343565_SNP [dm6]	A	G	9.212e^-5	0.321	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9552585	3R_9552585_SNP [dm3] 3R_13726863_SNP [dm6]	A	T	9.216e^-5	0.321	INTRON CG34383
3L	14316686	3L_14316686_INS [dm3] 3L_14323586_INS [dm6]	C	CAGC	9.236e^-5	0.321	INTRON fz & 1 other
X	15578111	X_15578111_SNP [dm3] X_15684078_SNP [dm6]	C	T	9.321e^-5	0.323	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15822206	3R_15822206_SNP [dm3] 3R_19996484_SNP [dm6]	C	A	9.332e^-5	0.323	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17911036	3L_17911036_SNP [dm3] 3L_17917936_SNP [dm6]	G	A	9.339e^-5	0.323	INTERGENIC
X	14102983	X_14102983_SNP [dm3] X_14208950_SNP [dm6]	T	A	9.398e^-5	0.325	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15365557	2L_15365557_SNP [dm3] 2L_15365557_SNP [dm6]	C	G	9.434e^-5	0.325	INTERGENIC
3R	15877915	3R_15877915_SNP [dm3] 3R_20052193_SNP [dm6]	A	C	9.464e^-5	0.326	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	17717148	3L_17717148_SNP [dm3] 3L_17724048_SNP [dm6]	G	T	9.536e^-5	0.327	INTRON Ccn & 1 other
X	6566283	X_6566283_DEL [dm3] X_6672250_DEL [dm6]	GT	G	9.547e^-5	0.327	INTRON CG3198	TF binding site mE1_TFBS_inv
2R	11832387	2R_11832387_SNP [dm3] 2R_15944882_SNP [dm6]	G	T	9.771e^-5	0.334	DOWNSTREAM CG30093 INTRON Cyp4aa1
3R	16827442	3R_16827442_SNP [dm3] 3R_21001720_SNP [dm6]	G	A	9.773e^-5	0.334	INTRON Calx
2L	3491896	2L_3491896_DEL [dm3] 2L_3491896_DEL [dm6]	AC	A	9.796e^-5	0.334	UPSTREAM CG15414 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4137420	2L_4137420_SNP [dm3] 2L_4137420_SNP [dm6]	T	A	9.868e^-5	0.335	INTERGENIC
3R	14599247	3R_14599247_DEL [dm3] 3R_18773525_DEL [dm6]	GA	G	9.870e^-5	0.335	INTRON CG7720
3R	10628528	3R_10628528_SNP [dm3] 3R_14802806_SNP [dm6]	G	C	9.916e^-5	0.336	SYNONYMOUS_CODING CG14857
2L	14399184	2L_14399184_SNP [dm3] 2L_14399184_SNP [dm6]	A	G	9.936e^-5	0.336	INTRON elB
3L	21283599	3L_21283599_SNP [dm3] 3L_21290499_SNP [dm6]	A	G	9.992e^-5	0.337	DOWNSTREAM pzg INTERGENIC
3R	15878120	3R_15878120_SNP [dm3] 3R_20052398_SNP [dm6]	C	T	1.001e^-4	0.337	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	22621772	3R_22621772_DEL [dm3] 3R_26796050_DEL [dm6]	TAAGATATCTAC...	T	1.005e^-4	0.337	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15880789	3R_15880789_SNP [dm3] 3R_20055067_SNP [dm6]	C	T	1.006e^-4	0.337	UPSTREAM CG17193 INTRON CG17193
3R	9552603	3R_9552603_SNP [dm3] 3R_13726881_SNP [dm6]	T	A	1.008e^-4	0.337	INTRON CG34383
3R	17827272	3R_17827272_SNP [dm3] 3R_22001550_SNP [dm6]	T	C	1.008e^-4	0.337	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3353236	3L_3353236_SNP [dm3] 3L_3353236_SNP [dm6]	C	T	1.010e^-4	0.337	INTRON kst	TF binding site mE1_TFBS_cad
X	11097630	X_11097630_SNP [dm3] X_11203597_SNP [dm6]	A	C	1.011e^-4	0.337	DOWNSTREAM CG11106 INTERGENIC
2R	18681194	2R_18681194_DEL [dm3] 2R_22793689_DEL [dm6]	GG	G	1.012e^-4	0.337	INTRON CG42260
2L	5576330	2L_5576330_INS [dm3] 2L_5576330_INS [dm6]	A	AA	1.013e^-4	0.337	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13276446	3R_13276446_SNP [dm3] 3R_17450724_SNP [dm6]	G	T	1.015e^-4	0.337	INTERGENIC
3L	15243786	3L_15243786_SNP [dm3] 3L_15250686_SNP [dm6]	G	A	1.018e^-4	0.338	INTERGENIC
3R	14716430	3R_14716430_SNP [dm3] 3R_18890708_SNP [dm6]	G	A	1.025e^-4	0.338	INTERGENIC
3L	8314755	3L_8314755_DEL [dm3] 3L_8321655_DEL [dm6]	AT	A	1.028e^-4	0.338	INTRON CG13670
X	20304307	X_20304307_SNP [dm3] X_20433280_SNP [dm6]	G	A	1.030e^-4	0.338	UPSTREAM CG1695 DOWNSTREAM mal INTERGENIC
X	7265943	X_7265943_SNP [dm3] X_7371910_SNP [dm6]	G	A	1.030e^-4	0.338	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	20305845	X_20305845_SNP [dm3] X_20434818_SNP [dm6]	C	A	1.031e^-4	0.338	INTRON CG1695	TF binding site mE1_TFBS_Trl
X	11098110	X_11098110_SNP [dm3] X_11204077_SNP [dm6]	T	A	1.031e^-4	0.338	INTERGENIC
3L	4359566	3L_4359566_INS [dm3] 3L_4359566_INS [dm6]	C	CC	1.031e^-4	0.338	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3500119	3L_3500119_SNP [dm3] 3L_3500119_SNP [dm6]	T	C	1.035e^-4	0.338	INTRON CG42324
3L	3013639	3L_3013639_SNP [dm3] 3L_3013639_SNP [dm6]	T	G	1.035e^-4	0.338	INTERGENIC
3R	9552594	3R_9552594_SNP [dm3] 3R_13726872_SNP [dm6]	C	A	1.044e^-4	0.34	INTRON CG34383
3L	6057307	3L_6057307_SNP [dm3] 3L_6064207_SNP [dm6]	A	G	1.046e^-4	0.34	INTERGENIC
3L	4313352	3L_4313352_SNP [dm3] 3L_4313352_SNP [dm6]	T	C	1.048e^-4	0.34	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15877321	3R_15877321_SNP [dm3] 3R_20051599_SNP [dm6]	G	A	1.050e^-4	0.34	INTRON CG17193
3L	2024001	3L_2024001_SNP [dm3] 3L_2024001_SNP [dm6]	C	G	1.052e^-4	0.34	UPSTREAM CG42356 INTERGENIC
3R	15723694	3R_15723694_SNP [dm3] 3R_19897972_SNP [dm6]	G	A	1.054e^-4	0.34	SYNONYMOUS_CODING CG4733 DOWNSTREAM CG4538 INTRON CG4538
2R	10957975	2R_10957975_SNP [dm3] 2R_15070470_SNP [dm6]	C	G	1.057e^-4	0.34	INTERGENIC
2R	7139613	2R_7139613_SNP [dm3] 2R_11252108_SNP [dm6]	G	A	1.058e^-4	0.34	UTR_3_PRIME Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15675528	3R_15675528_SNP [dm3] 3R_19849806_SNP [dm6]	A	G	1.060e^-4	0.34	INTRON CG4662
3L	11217998	3L_11217998_SNP [dm3] 3L_11224898_SNP [dm6]	A	T	1.062e^-4	0.34	INTRON CG42671	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24660301	3R_24660301_SNP [dm3] 3R_28834579_SNP [dm6]	C	G	1.064e^-4	0.341	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	14166036	3R_14166036_SNP [dm3] 3R_18340314_SNP [dm6]	A	T	1.068e^-4	0.341	INTRON CG15803
3R	9552582	3R_9552582_SNP [dm3] 3R_13726860_SNP [dm6]	T	C	1.072e^-4	0.342	INTRON CG34383
3L	6577170	3L_6577170_SNP [dm3] 3L_6584070_SNP [dm6]	C	A	1.073e^-4	0.342	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
2L	3131219	2L_3131219_SNP [dm3] 2L_3131219_SNP [dm6]	T	A	1.076e^-4	0.342	INTRON toc
3R	15041595	3R_15041595_SNP [dm3] 3R_19215873_SNP [dm6]	T	A	1.082e^-4	0.343	UTR_3_PRIME vib DOWNSTREAM cry
3R	15632614	3R_15632614_SNP [dm3] 3R_19806892_SNP [dm6]	C	T	1.086e^-4	0.343	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11674969	2R_11674969_DEL [dm3] 2R_15787464_DEL [dm6]	TCTGCTGCCTCTCCAT...	T	1.088e^-4	0.343	INTRON Zasp52
X	3460960	X_3460960_DEL [dm3] X_3566927_DEL [dm6]	TTCACACGTAAAACA...	GG	1.090e^-4	0.343	INTRON CG32791 & 1 other
3L	6441159	3L_6441159_SNP [dm3] 3L_6448059_SNP [dm6]	C	T	1.092e^-4	0.343	INTRON CG42747
2L	12365028	2L_12365028_SNP [dm3] 2L_12365028_SNP [dm6]	A	G	1.092e^-4	0.343	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3L	11603222	3L_11603222_INS [dm3] 3L_11610122_INS [dm6]	C	CC	1.094e^-4	0.343	UPSTREAM CG42832 & 1 other DOWNSTREAM Muc68Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4336566	2L_4336566_DEL [dm3] 2L_4336566_DEL [dm6]	AAA	A	1.095e^-4	0.343	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3565313	3L_3565313_SNP [dm3] 3L_3565313_SNP [dm6]	G	C	1.096e^-4	0.343	INTRON Eip63E
3R	15876609	3R_15876609_SNP [dm3] 3R_20050887_SNP [dm6]	T	C	1.097e^-4	0.343	INTRON CG17193
2R	17809045	2R_17809045_SNP [dm3] 2R_21921540_SNP [dm6]	G	A	1.102e^-4	0.344	UTR_5_PRIME Fili	TF binding site mE1_TFBS_inv
2L	14105058	2L_14105058_MNP [dm3] 2L_14105058_MNP [dm6]	TCA	GTC	1.108e^-4	0.345	INTRON CG16879	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5337708	3L_5337708_SNP [dm3] 3L_5344608_SNP [dm6]	A	G	1.113e^-4	0.345	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15822203	3R_15822203_SNP [dm3] 3R_19996481_SNP [dm6]	G	C	1.116e^-4	0.345	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27141972	3R_27141972_SNP [dm3] 3R_31316250_SNP [dm6]	T	G	1.117e^-4	0.345	INTRON CG34347
X	15184556	X_15184556_SNP [dm3] X_15290523_SNP [dm6]	G	C	1.117e^-4	0.345	DOWNSTREAM CR44663 EXON CR44664
3L	4180548	3L_4180548_SNP [dm3] 3L_4180548_SNP [dm6]	A	T	1.118e^-4	0.345	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14166037	3R_14166037_SNP [dm3] 3R_18340315_SNP [dm6]	T	A	1.120e^-4	0.345	INTRON CG15803
3R	27230564	3R_27230564_INS [dm3] 3R_31404842_INS [dm6]	T	TGTATATATAG...	1.122e^-4	0.345	UPSTREAM Gprk2 & 1 other INTRON CG11337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6571082	3L_6571082_INS [dm3] 3L_6577982_INS [dm6]	A	ACTA	1.124e^-4	0.345	INTRON CG18769 & 1 other
3R	15949880	3R_15949880_SNP [dm3] 3R_20124158_SNP [dm6]	G	A	1.125e^-4	0.345	INTERGENIC
3R	15023682	3R_15023682_DEL [dm3] 3R_19197960_DEL [dm6]	TT	T	1.126e^-4	0.345	INTRON CG31475
2L	18387732	2L_18387732_INS [dm3] 2L_18387732_INS [dm6]	C	CCAAAGACACTAGAATAACT...	1.133e^-4	0.345	DOWNSTREAM Fas3 INTRON Fas3
X	20306144	X_20306144_INS [dm3] X_20435117_INS [dm6]	T	TTCATTTT	1.136e^-4	0.345	INTRON CG1695
3R	9552618	3R_9552618_SNP [dm3] 3R_13726896_SNP [dm6]	C	T	1.138e^-4	0.345	INTRON CG34383
3R	9553265	3R_9553265_SNP [dm3] 3R_13727543_SNP [dm6]	G	A	1.142e^-4	0.345	INTRON CG34383
2L	10384489	2L_10384489_SNP [dm3] 2L_10384489_SNP [dm6]	G	A	1.142e^-4	0.345	SYNONYMOUS_CODING CG5096 DOWNSTREAM cdc2
3L	4313353	3L_4313353_SNP [dm3] 3L_4313353_SNP [dm6]	T	C	1.143e^-4	0.345	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3070001	2R_3070001_SNP [dm3] 2R_7182496_SNP [dm6]	T	C	1.143e^-4	0.345	SYNONYMOUS_CODING CG30385 UPSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	16112866	3R_16112866_SNP [dm3] 3R_20287144_SNP [dm6]	G	A	1.147e^-4	0.345	INTRON cic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11955817	3R_11955817_SNP [dm3] 3R_16130095_SNP [dm6]	G	A	1.147e^-4	0.345	INTRON Sb
3L	22962906	3L_22962906_SNP [dm3] 3L_22969806_SNP [dm6]	C	T	1.148e^-4	0.345	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	1840177	2R_1840177_INS [dm3] 2R_5952672_INS [dm6]	T	TAAC	1.150e^-4	0.345	INTERGENIC
3L	18292654	3L_18292654_SNP [dm3] 3L_18299554_SNP [dm6]	G	A	1.150e^-4	0.345	INTRON CG13700
3L	18292656	3L_18292656_SNP [dm3] 3L_18299556_SNP [dm6]	T	C	1.150e^-4	0.345	INTRON CG13700
X	20748515	X_20748515_SNP [dm3] X_20877488_SNP [dm6]	T	A	1.152e^-4	0.345	INTRON shakB
3R	8532990	3R_8532990_SNP [dm3] 3R_12707268_SNP [dm6]	T	G	1.156e^-4	0.346	INTRON mus308	TF binding site mE1_TFBS_cad
X	1665831	X_1665831_SNP [dm3] X_1771798_SNP [dm6]	A	C	1.157e^-4	0.346	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6787115	2L_6787115_DEL [dm3] 2L_6787115_DEL [dm6]	ATGTA	A	1.166e^-4	0.348	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10657840	3R_10657840_SNP [dm3] 3R_14832118_SNP [dm6]	A	G	1.171e^-4	0.348	INTRON btsz
2L	21944642	2L_21944642_INS [dm3] 2L_21944642_INS [dm6]	C	CTTAAGCT	1.174e^-4	0.348	INTERGENIC
2L	21944643	2L_21944643_DEL [dm3] 2L_21944643_DEL [dm6]	AC	A	1.174e^-4	0.348	INTERGENIC
3L	7619639	3L_7619639_INS [dm3] 3L_7626539_INS [dm6]	C	CTAG	1.174e^-4	0.348	INTRON CG33275
3R	15817829	3R_15817829_SNP [dm3] 3R_19992107_SNP [dm6]	A	G	1.176e^-4	0.348	INTRON Hs6st
X	14095020	X_14095020_INS [dm3] X_14200987_INS [dm6]	A	AAAC	1.181e^-4	0.349	UPSTREAM l_1_G0007 DOWNSTREAM CG11590 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	8818594	X_8818594_SNP [dm3] X_8924561_SNP [dm6]	G	C	1.187e^-4	0.35	UPSTREAM CG12661 & 1 other DOWNSTREAM CG43255 INTRON rdgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8130928	2L_8130928_INS [dm3] 2L_8130928_INS [dm6]	A	AG	1.189e^-4	0.35	INTRON CG8668
2L	7721690	2L_7721690_DEL [dm3] 2L_7721690_DEL [dm6]	AA	A	1.195e^-4	0.351	INTRON CG13794
3L	13615410	3L_13615410_INS [dm3] 3L_13622310_INS [dm6]	A	AA	1.202e^-4	0.353	INTRON bru-3
2L	521550	2L_521550_SNP [dm3] 2L_521550_SNP [dm6]	G	A	1.205e^-4	0.353	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1606050	2R_1606050_SNP [dm3] 2R_5718545_SNP [dm6]	T	G	1.205e^-4	0.353	INTRON ap
3L	296730	3L_296730_INS [dm3] 3L_296730_INS [dm6]	T	TC	1.209e^-4	0.353	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	14321291	X_14321291_SNP [dm3] X_14427258_SNP [dm6]	C	A	1.209e^-4	0.353	INTRON dpr8
3L	12442897	3L_12442897_DEL [dm3] 3L_12449797_DEL [dm6]	CGGAAGCC	C	1.214e^-4	0.354	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26459341	3R_26459341_SNP [dm3] 3R_30633619_SNP [dm6]	C	T	1.219e^-4	0.354	INTERGENIC
3R	15885470	3R_15885470_SNP [dm3] 3R_20059748_SNP [dm6]	T	C	1.223e^-4	0.355	UTR_5_PRIME CG4390 DOWNSTREAM mdlc
X	20303957	X_20303957_DEL [dm3] X_20432930_DEL [dm6]	CACTTTACATC...	C	1.228e^-4	0.356	UTR_3_PRIME mal
3R	27819436	3R_27819436_DEL [dm3] 3R_31993714_DEL [dm6]	TATAATTTAAATT...	T	1.236e^-4	0.356	UPSTREAM heph INTRON heph
3R	16112571	3R_16112571_SNP [dm3] 3R_20286849_SNP [dm6]	A	C	1.236e^-4	0.356	INTRON cic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19473165	3L_19473165_SNP [dm3] 3L_19480065_SNP [dm6]	C	T	1.237e^-4	0.356	INTERGENIC
3R	10775626	3R_10775626_SNP [dm3] 3R_14949904_SNP [dm6]	G	A	1.240e^-4	0.356	INTERGENIC
2R	11829875	2R_11829875_SNP [dm3] 2R_15942370_SNP [dm6]	T	C	1.243e^-4	0.356	UPSTREAM CG8299 & 1 other INTERGENIC
X	20748517	X_20748517_SNP [dm3] X_20877490_SNP [dm6]	C	G	1.245e^-4	0.356	INTRON shakB
2R	11772268	2R_11772268_SNP [dm3] 2R_15884763_SNP [dm6]	T	C	1.246e^-4	0.356	INTRON sli
3L	11218011	3L_11218011_SNP [dm3] 3L_11224911_SNP [dm6]	G	T	1.246e^-4	0.356	INTRON CG42671	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13355483	3L_13355483_DEL [dm3] 3L_13362383_DEL [dm6]	AT	A	1.246e^-4	0.356	INTERGENIC
3L	2415978	3L_2415978_SNP [dm3] 3L_2415978_SNP [dm6]	C	T	1.247e^-4	0.356	INTRON CG45186
3L	8314790	3L_8314790_SNP [dm3] 3L_8321690_SNP [dm6]	A	G	1.250e^-4	0.356	INTRON CG13670
3R	17826620	3R_17826620_SNP [dm3] 3R_22000898_SNP [dm6]	A	C	1.250e^-4	0.356	INTRON Eip93F
3R	16232350	3R_16232350_SNP [dm3] 3R_20406628_SNP [dm6]	A	C	1.254e^-4	0.357	UTR_3_PRIME CG4335 INTRON Gfrl	TF binding site mE1_TFBS_inv
X	15185034	X_15185034_SNP [dm3] X_15291001_SNP [dm6]	G	T	1.267e^-4	0.359	DOWNSTREAM CR44664 INTERGENIC
2R	2830664	2R_2830664_SNP [dm3] 2R_6943159_SNP [dm6]	T	C	1.268e^-4	0.359	UTR_3_PRIME CheB42b INTRON mim
2R	17731346	2R_17731346_DEL [dm3] 2R_21843841_DEL [dm6]	CA	C	1.281e^-4	0.362	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8632291	3L_8632291_SNP [dm3] 3L_8639191_SNP [dm6]	C	T	1.286e^-4	0.363	DOWNSTREAM Zasp66 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	8167784	3R_8167784_DEL [dm3] 3R_12342062_DEL [dm6]	TGAGCCCTCCTAT...	T	1.287e^-4	0.363	CODON_DELETION CG44956
3L	16555349	3L_16555349_SNP [dm3] 3L_16562249_SNP [dm6]	T	A	1.291e^-4	0.364	INTERGENIC
2L	6098736	2L_6098736_DEL [dm3] 2L_6098736_DEL [dm6]	GA	G	1.294e^-4	0.364	UTR_5_PRIME CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9166394	2L_9166394_SNP [dm3] 2L_9166394_SNP [dm6]	G	C	1.299e^-4	0.365	UTR_5_PRIME CG9586 UPSTREAM tai DOWNSTREAM CG13108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8314775	3L_8314775_SNP [dm3] 3L_8321675_SNP [dm6]	A	T	1.303e^-4	0.365	INTRON CG13670
3R	25855902	3R_25855902_SNP [dm3] 3R_30030180_SNP [dm6]	G	A	1.311e^-4	0.367	INTRON Axn	TF binding site BDTNP1_TFBS_dl
3R	10657837	3R_10657837_SNP [dm3] 3R_14832115_SNP [dm6]	A	T	1.315e^-4	0.367	INTRON btsz
X	7266015	X_7266015_SNP [dm3] X_7371982_SNP [dm6]	T	A	1.317e^-4	0.367	INTRON CG1677 & 1 other	TF binding site mE1_TFBS_HSA
2R	12864621	2R_12864621_INS [dm3] 2R_16977116_INS [dm6]	T	TT	1.319e^-4	0.367	INTRON Cbp53E
3L	17911017	3L_17911017_SNP [dm3] 3L_17917917_SNP [dm6]	C	T	1.320e^-4	0.367	INTERGENIC
X	3461340	X_3461340_SNP [dm3] X_3567307_SNP [dm6]	T	G	1.323e^-4	0.368	INTRON CG32791 & 1 other
3L	10145661	3L_10145661_SNP [dm3] 3L_10152561_SNP [dm6]	T	C	1.330e^-4	0.369	SYNONYMOUS_CODING CG8072 UPSTREAM snoRNA:MeU2-A31 INTRON dpr10
2L	3595226	2L_3595226_SNP [dm3] 2L_3595226_SNP [dm6]	G	A	1.336e^-4	0.37	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8314761	3L_8314761_MNP [dm3] 3L_8321661_MNP [dm6]	TTAATA	GCCTCT	1.342e^-4	0.37	INTRON CG13670
3L	8314770	3L_8314770_SNP [dm3] 3L_8321670_SNP [dm6]	A	T	1.342e^-4	0.37	INTRON CG13670
3L	21121862	3L_21121862_SNP [dm3] 3L_21128762_SNP [dm6]	T	A	1.342e^-4	0.37	INTRON ko
2R	18527834	2R_18527834_INS [dm3] 2R_22640329_INS [dm6]	A	AAACCTATATCGAA...	1.347e^-4	0.371	UPSTREAM CG3732 DOWNSTREAM RpS24 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	2429475	2L_2429475_INS [dm3] 2L_2429475_INS [dm6]	T	TCAAT	1.349e^-4	0.371	INTRON dpp
2L	21913637	2L_21913637_SNP [dm3] 2L_21913637_SNP [dm6]	T	G	1.351e^-4	0.371	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
3R	15424404	3R_15424404_SNP [dm3] 3R_19598682_SNP [dm6]	T	G	1.356e^-4	0.371	INTRON Cpr92A
2L	12210043	2L_12210043_DEL [dm3] 2L_12210043_DEL [dm6]	AATTCG	A	1.357e^-4	0.371	UTR_3_PRIME CG31759 DOWNSTREAM CG31759 INTRON aret
3L	13145614	3L_13145614_SNP [dm3] 3L_13152514_SNP [dm6]	C	T	1.360e^-4	0.371	INTERGENIC
3R	20401420	3R_20401420_SNP [dm3] 3R_24575698_SNP [dm6]	C	A	1.365e^-4	0.371	INTRON CG13624
3L	5334849	3L_5334849_SNP [dm3] 3L_5341749_SNP [dm6]	T	C	1.368e^-4	0.371	UPSTREAM tRNA:S7:64D INTERGENIC
3L	12847852	3L_12847852_SNP [dm3] 3L_12854752_SNP [dm6]	C	T	1.369e^-4	0.371	SYNONYMOUS_CODING Ent3
3R	15246068	3R_15246068_DEL [dm3] 3R_19420346_DEL [dm6]	AAAA	A	1.373e^-4	0.371	INTRON CG31221
3L	19473191	3L_19473191_SNP [dm3] 3L_19480091_SNP [dm6]	A	G	1.374e^-4	0.371	INTERGENIC
3L	10111348	3L_10111348_SNP [dm3] 3L_10118248_SNP [dm6]	G	A	1.376e^-4	0.371	INTRON dpr6
3R	11424798	3R_11424798_SNP [dm3] 3R_15599076_SNP [dm6]	G	A	1.376e^-4	0.371	INTERGENIC
X	15185020	X_15185020_INS [dm3] X_15290987_INS [dm6]	G	CCATAATA	1.379e^-4	0.371	DOWNSTREAM CR44664 INTERGENIC
2R	11397677	2R_11397677_INS [dm3] 2R_15510172_INS [dm6]	T	TAT	1.379e^-4	0.371	INTERGENIC
3R	15752717	3R_15752717_INS [dm3] 3R_19926995_INS [dm6]	A	AGAA	1.381e^-4	0.371	INTRON CG4459	TF binding site mE1_TFBS_cad
3R	5989890	3R_5989890_SNP [dm3] 3R_10164168_SNP [dm6]	A	G	1.381e^-4	0.371	INTRON Best1
2R	1127765	2R_1127765_DEL [dm3] 2R_5240260_DEL [dm6]	TGTTTCGATCTAATGGGGAG...	T	1.383e^-4	0.371	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl
3R	21439437	3R_21439437_SNP [dm3] 3R_25613715_SNP [dm6]	G	C	1.386e^-4	0.371	UPSTREAM CG5079 INTRON Npl4
X	14095029	X_14095029_INS [dm3] X_14200996_INS [dm6]	T	TGTTTTGAACAT...	1.389e^-4	0.371	UPSTREAM l_1_G0007 DOWNSTREAM CG11590 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	15813351	X_15813351_SNP [dm3] X_15919318_SNP [dm6]	A	G	1.391e^-4	0.371	SYNONYMOUS_CODING CG8909
X	7682831	X_7682831_SNP [dm3] X_7788798_SNP [dm6]	A	T	1.392e^-4	0.371	INTERGENIC
3L	11087401	3L_11087401_SNP [dm3] 3L_11094301_SNP [dm6]	T	C	1.395e^-4	0.371	SYNONYMOUS_CODING CG6279	TF binding site mE1_TFBS_chinmo
X	7215264	X_7215264_SNP [dm3] X_7321231_SNP [dm6]	A	G	1.398e^-4	0.371	INTRON CR44357 & 2 others	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15180912	3R_15180912_INS [dm3] 3R_19355190_INS [dm6]	T	TGTGAGAAACTGATACTCAC...	1.398e^-4	0.371	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	19419692	2L_19419692_SNP [dm3] 2L_19419692_SNP [dm6]	G	A	1.400e^-4	0.371	UTR_3_PRIME lectin-37Db DOWNSTREAM lectin-37Da INTRON Pax
X	7682827	X_7682827_SNP [dm3] X_7788794_SNP [dm6]	T	C	1.401e^-4	0.371	INTERGENIC
2L	12281131	2L_12281131_SNP [dm3] 2L_12281131_SNP [dm6]	G	A	1.404e^-4	0.371	INTRON aret
3R	26180188	3R_26180188_INS [dm3] 3R_30354466_INS [dm6]	C	CAGTTATAAC	1.405e^-4	0.371	INTRON hdc
2L	521454	2L_521454_SNP [dm3] 2L_521454_SNP [dm6]	A	C	1.406e^-4	0.371	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9320520	2L_9320520_INS [dm3] 2L_9320520_INS [dm6]	C	CTTGAA	1.407e^-4	0.371	INTERGENIC
2R	18921877	2R_18921877_INS [dm3] 2R_23034354_INS [dm6]	C	CGGTATA	1.424e^-4	0.375	INTRON twi & 1 other	TF binding site mE1_TFBS_cad
3L	6057208	3L_6057208_SNP [dm3] 3L_6064108_SNP [dm6]	G	A	1.426e^-4	0.375	INTERGENIC
3L	10441107	3L_10441107_SNP [dm3] 3L_10448007_SNP [dm6]	G	C	1.430e^-4	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14670039	3L_14670039_SNP [dm3] 3L_14676939_SNP [dm6]	C	T	1.434e^-4	0.376	INTRON ome & 1 other
3L	2953329	3L_2953329_SNP [dm3] 3L_2953329_SNP [dm6]	T	A	1.436e^-4	0.376	UTR_3_PRIME Shab INTRON Shab
3R	15879766	3R_15879766_SNP [dm3] 3R_20054044_SNP [dm6]	G	C	1.436e^-4	0.376	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18498146	3L_18498146_SNP [dm3] 3L_18505046_SNP [dm6]	C	T	1.440e^-4	0.376	INTERGENIC
X	6266011	X_6266011_SNP [dm3] X_6371978_SNP [dm6]	G	A	1.440e^-4	0.376	SYNONYMOUS_CODING PpV UPSTREAM CR44816	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12107229	3L_12107229_SNP [dm3] 3L_12114129_SNP [dm6]	A	T	1.443e^-4	0.376	INTERGENIC
3L	11222901	3L_11222901_SNP [dm3] 3L_11229801_SNP [dm6]	G	A	1.452e^-4	0.378	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
X	8747066	X_8747066_SNP [dm3] X_8853033_SNP [dm6]	T	G	1.459e^-4	0.379	UPSTREAM CG12075 INTRON CG12075
3R	15344921	3R_15344921_SNP [dm3] 3R_19519199_SNP [dm6]	T	C	1.463e^-4	0.379	INTRON Dys
3L	15766433	3L_15766433_SNP [dm3] 3L_15773333_SNP [dm6]	G	A	1.464e^-4	0.379	INTERGENIC
3L	12384144	3L_12384144_SNP [dm3] 3L_12391044_SNP [dm6]	C	A	1.464e^-4	0.379	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14238949	2R_14238949_INS [dm3] 2R_18351444_INS [dm6]	T	TT	1.467e^-4	0.379	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	5196215	2R_5196215_DEL [dm3] 2R_9308710_DEL [dm6]	TT	T	1.472e^-4	0.379	UTR_5_PRIME Myd88 UPSTREAM Myd88 DOWNSTREAM CG13739 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15049748	3R_15049748_SNP [dm3] 3R_19224026_SNP [dm6]	T	C	1.474e^-4	0.379	INTRON vib
3R	22671449	3R_22671449_SNP [dm3] 3R_26845727_SNP [dm6]	A	C	1.475e^-4	0.379	INTRON Lerp
X	10382790	X_10382790_SNP [dm3] X_10488757_SNP [dm6]	C	T	1.476e^-4	0.379	INTERGENIC
3L	17911038	3L_17911038_SNP [dm3] 3L_17917938_SNP [dm6]	A	C	1.476e^-4	0.379	INTERGENIC
3R	15813438	3R_15813438_SNP [dm3] 3R_19987716_SNP [dm6]	T	A	1.481e^-4	0.38	INTRON Hs6st
3L	13203420	3L_13203420_SNP [dm3] 3L_13210320_SNP [dm6]	C	A	1.484e^-4	0.38	UPSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11130108	3L_11130108_SNP [dm3] 3L_11137008_SNP [dm6]	G	T	1.486e^-4	0.38	INTRON CG32082
3R	24468275	3R_24468275_SNP [dm3] 3R_28642553_SNP [dm6]	G	A	1.487e^-4	0.38	SYNONYMOUS_CODING CG14062	TF binding site mE1_TFBS_cad
3R	14678043	3R_14678043_DEL [dm3] 3R_18852321_DEL [dm6]	TTGCTG	T	1.495e^-4	0.381	UPSTREAM CG31226 INTERGENIC
3R	17826535	3R_17826535_SNP [dm3] 3R_22000813_SNP [dm6]	T	G	1.495e^-4	0.381	INTRON Eip93F
3R	16225334	3R_16225334_SNP [dm3] 3R_20399612_SNP [dm6]	C	G	1.501e^-4	0.382	SYNONYMOUS_CODING Gfrl DOWNSTREAM Gfrl INTRON Gfrl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10588723	2R_10588723_SNP [dm3] 2R_14701218_SNP [dm6]	A	T	1.510e^-4	0.382	INTRON mspo
X	8784781	X_8784781_SNP [dm3] X_8890748_SNP [dm6]	C	G	1.510e^-4	0.382	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22047559	3R_22047559_SNP [dm3] 3R_26221837_SNP [dm6]	A	C	1.516e^-4	0.382	INTERGENIC
3R	21192730	3R_21192730_SNP [dm3] 3R_25367008_SNP [dm6]	A	G	1.517e^-4	0.382	INTRON Fur1
2L	6293721	2L_6293721_DEL [dm3] 2L_6293721_DEL [dm6]	TAAAAGCTAACATATGACTA...	T	1.519e^-4	0.382	INTRON Ddr
2L	1711319	2L_1711319_SNP [dm3] 2L_1711319_SNP [dm6]	T	A	1.525e^-4	0.382	UTR_3_PRIME mRpL48 & 1 other UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	6728839	3R_6728839_SNP [dm3] 3R_10903117_SNP [dm6]	C	T	1.525e^-4	0.382	INTERGENIC
3R	15882359	3R_15882359_SNP [dm3] 3R_20056637_SNP [dm6]	A	G	1.526e^-4	0.382	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14175894	3L_14175894_SNP [dm3] 3L_14182794_SNP [dm6]	G	C	1.527e^-4	0.382	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1149738	2R_1149738_DEL [dm3] 2R_5262233_DEL [dm6]	CT	C	1.540e^-4	0.382	INTRON d4	transposable element FlyBase
2R	1150429	2R_1150429_SNP [dm3] 2R_5262924_SNP [dm6]	T	G	1.541e^-4	0.382	INTRON d4
3R	16266133	3R_16266133_SNP [dm3] 3R_20440411_SNP [dm6]	A	C	1.542e^-4	0.382	INTRON Gfrl
3R	15655107	3R_15655107_SNP [dm3] 3R_19829385_SNP [dm6]	C	A	1.542e^-4	0.382	INTRON bnl
3R	15815385	3R_15815385_SNP [dm3] 3R_19989663_SNP [dm6]	A	G	1.543e^-4	0.382	INTRON Hs6st
3R	9552605	3R_9552605_SNP [dm3] 3R_13726883_SNP [dm6]	A	G	1.547e^-4	0.382	INTRON CG34383
3L	14908056	3L_14908056_SNP [dm3] 3L_14914956_SNP [dm6]	G	A	1.548e^-4	0.382	INTRON DCX-EMAP
2R	11832373	2R_11832373_SNP [dm3] 2R_15944868_SNP [dm6]	C	T	1.559e^-4	0.382	DOWNSTREAM CG30093 INTRON Cyp4aa1
3L	12109781	3L_12109781_SNP [dm3] 3L_12116681_SNP [dm6]	T	C	1.560e^-4	0.382	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21872816	3L_21872816_DEL [dm3] 3L_21879716_DEL [dm6]	CC	C	1.560e^-4	0.382	UTR_5_PRIME mub INTRON mub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	5246301	3L_5246301_SNP [dm3] 3L_5253201_SNP [dm6]	G	T	1.561e^-4	0.382	INTRON shep
X	13500120	X_13500120_DEL [dm3] X_13606087_DEL [dm6]	TCGATAATGCCGT...	T	1.561e^-4	0.382	UTR_5_PRIME CG11178 UPSTREAM CG11178 DOWNSTREAM CR44654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
X	14135621	X_14135621_SNP [dm3] X_14241588_SNP [dm6]	G	T	1.561e^-4	0.382	SYNONYMOUS_CODING mRNA-cap	TF binding site mE1_TFBS_cad
2L	12289625	2L_12289625_SNP [dm3] 2L_12289625_SNP [dm6]	A	G	1.561e^-4	0.382	INTRON aret
3L	19473120	3L_19473120_SNP [dm3] 3L_19480020_SNP [dm6]	A	C	1.563e^-4	0.382	INTERGENIC
3L	12109631	3L_12109631_INS [dm3] 3L_12116531_INS [dm6]	A	TG	1.568e^-4	0.382	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5483878	2L_5483878_SNP [dm3] 2L_5483878_SNP [dm6]	A	G	1.569e^-4	0.382	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9552536	3R_9552536_SNP [dm3] 3R_13726814_SNP [dm6]	T	C	1.569e^-4	0.382	INTRON CG34383
X	6322517	X_6322517_DEL [dm3] X_6428484_DEL [dm6]	GGGTGTGTGAA...	G	1.571e^-4	0.382	INTRON CG42340
2L	7524612	2L_7524612_SNP [dm3] 2L_7524612_SNP [dm6]	G	A	1.574e^-4	0.382	INTRON RapGAP1
2R	16407287	2R_16407287_DEL [dm3] 2R_20519782_DEL [dm6]	AA	A	1.578e^-4	0.382	INTERGENIC
X	1533915	X_1533915_INS [dm3] X_1639882_INS [dm6]	T	TT	1.578e^-4	0.382	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_HSA
X	5412219	X_5412219_SNP [dm3] X_5518186_SNP [dm6]	G	A	1.578e^-4	0.382	UTR_3_PRIME CG12730 UPSTREAM CR45518	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	16439669	2L_16439669_SNP [dm3] 2L_16439669_SNP [dm6]	G	A	1.579e^-4	0.382	INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	12395201	X_12395201_SNP [dm3] X_12501168_SNP [dm6]	G	C	1.579e^-4	0.382	INTRON CG2556
3R	16438685	3R_16438685_SNP [dm3] 3R_20612963_SNP [dm6]	C	G	1.582e^-4	0.382	SPLICE_SITE_REGION CG15923 DOWNSTREAM bon INTRON CG15923
2R	6946907	2R_6946907_INS [dm3] 2R_11059402_INS [dm6]	A	AA	1.583e^-4	0.382	INTRON luna
X	19222484	X_19222484_INS [dm3] X_19328451_INS [dm6]	T	TCGCATAATGCAATCAGTGT...	1.587e^-4	0.382	UTR_3_PRIME nAChRalpha7 DOWNSTREAM nAChRalpha7
3L	15785290	3L_15785290_SNP [dm3] 3L_15792190_SNP [dm6]	G	A	1.587e^-4	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18144856	3L_18144856_DEL [dm3] 3L_18151756_DEL [dm6]	AGG	A	1.588e^-4	0.382	INTRON CG7330
3R	13398488	3R_13398488_INS [dm3] 3R_17572766_INS [dm6]	A	CTT	1.590e^-4	0.382	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9385547	3R_9385547_SNP [dm3] 3R_13559825_SNP [dm6]	C	T	1.595e^-4	0.382	INTERGENIC
2L	799104	2L_799104_SNP [dm3] 2L_799104_SNP [dm6]	G	T	1.595e^-4	0.382	UPSTREAM CR45259 INTERGENIC
3R	22034722	3R_22034722_SNP [dm3] 3R_26209000_SNP [dm6]	G	A	1.597e^-4	0.382	INTRON CR44320
3R	21266099	3R_21266099_INS [dm3] 3R_25440377_INS [dm6]	T	TT	1.597e^-4	0.382	INTRON Fur1
3L	703798	3L_703798_DEL [dm3] 3L_703798_DEL [dm6]	TT	T	1.601e^-4	0.382	INTERGENIC
3R	15712743	3R_15712743_SNP [dm3] 3R_19887021_SNP [dm6]	T	A	1.602e^-4	0.382	SPLICE_SITE_REGION ninaE DOWNSTREAM Pk92B INTRON ninaE	TF binding site mE1_TFBS_cad
2L	12301410	2L_12301410_SNP [dm3] 2L_12301410_SNP [dm6]	A	T	1.604e^-4	0.382	INTRON aret
2L	7899036	2L_7899036_SNP [dm3] 2L_7899036_SNP [dm6]	A	G	1.612e^-4	0.382	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10901277	3R_10901277_SNP [dm3] 3R_15075555_SNP [dm6]	T	A	1.612e^-4	0.382	INTRON dpr9
2R	18857672	2R_18857672_SNP [dm3] 2R_22970149_SNP [dm6]	G	A	1.614e^-4	0.382	INTERGENIC
2L	5483882	2L_5483882_DEL [dm3] 2L_5483882_DEL [dm6]	TACTCTTT	A	1.615e^-4	0.382	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15880635	3R_15880635_SNP [dm3] 3R_20054913_SNP [dm6]	C	T	1.617e^-4	0.382	UPSTREAM CG17193 INTRON CG17193
3L	5306407	3L_5306407_DEL [dm3] 3L_5313307_DEL [dm6]	AA	A	1.617e^-4	0.382	INTERGENIC
3R	25277176	3R_25277176_SNP [dm3] 3R_29451454_SNP [dm6]	A	T	1.620e^-4	0.382	INTRON Ptp99A
2R	19484278	2R_19484278_SNP [dm3] 2R_23596755_SNP [dm6]	A	T	1.620e^-4	0.382	NON_SYNONYMOUS_CODING apt INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2814737	2R_2814737_DEL [dm3] 2R_6927232_DEL [dm6]	AA	A	1.622e^-4	0.382	INTRON mim	TF binding site mE1_TFBS_cad
3L	14080835	3L_14080835_DEL [dm3] 3L_14087735_DEL [dm6]	TG	T	1.622e^-4	0.382	INTERGENIC
2L	6615050	2L_6615050_SNP [dm3] 2L_6615050_SNP [dm6]	T	A	1.622e^-4	0.382	INTRON CG11050
3R	18061867	3R_18061867_SNP [dm3] 3R_22236145_SNP [dm6]	C	A	1.623e^-4	0.382	INTRON SKIP
2R	2832018	2R_2832018_SNP [dm3] 2R_6944513_SNP [dm6]	C	T	1.625e^-4	0.382	UPSTREAM CheB42b DOWNSTREAM CheB42c INTRON mim
3L	17573731	3L_17573731_DEL [dm3] 3L_17580631_DEL [dm6]	GGAGAGGAATCTATAGATGG...	G	1.629e^-4	0.382	INTRON Eip74EF
3L	4417400	3L_4417400_SNP [dm3] 3L_4417400_SNP [dm6]	A	T	1.633e^-4	0.383	INTRON DOR
X	4488608	X_4488608_DEL [dm3] X_4594575_DEL [dm6]	GCTTGGCATCG...	G	1.635e^-4	0.383	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3R	12344912	3R_12344912_DEL [dm3] 3R_16519190_DEL [dm6]	TT	T	1.636e^-4	0.383	INTRON CG42342
3R	19818804	3R_19818804_INS [dm3] 3R_23993082_INS [dm6]	T	TT	1.641e^-4	0.383	UTR_5_PRIME Rab7 UPSTREAM Rab7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	17481255	X_17481255_DEL [dm3] X_17587222_DEL [dm6]	TACAT	T	1.648e^-4	0.384	INTRON CG12991
X	9653567	X_9653567_INS [dm3] X_9759534_INS [dm6]	T	TGTATAT	1.651e^-4	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	9552578	3R_9552578_SNP [dm3] 3R_13726856_SNP [dm6]	T	C	1.653e^-4	0.384	INTRON CG34383
3L	13190741	3L_13190741_SNP [dm3] 3L_13197641_SNP [dm6]	A	G	1.653e^-4	0.384	INTERGENIC	silencer mE1_HDAC_PRE
2R	17141708	2R_17141708_INS [dm3] 2R_21254203_INS [dm6]	T	TTTCATGTCACTTGAAAGTT...	1.654e^-4	0.384	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_inv
3R	15831650	3R_15831650_SNP [dm3] 3R_20005928_SNP [dm6]	T	G	1.655e^-4	0.384	INTRON Hs6st	TF binding site mE1_TFBS_cad
3L	17738862	3L_17738862_SNP [dm3] 3L_17745762_SNP [dm6]	G	C	1.659e^-4	0.384	NON_SYNONYMOUS_CODING CG6034 INTRON Ccn
3R	20318875	3R_20318875_INS [dm3] 3R_24493153_INS [dm6]	T	TT	1.661e^-4	0.384	INTERGENIC
2R	15731993	2R_15731993_SNP [dm3] 2R_19844488_SNP [dm6]	A	G	1.662e^-4	0.384	UPSTREAM CG44569 INTERGENIC
3R	16954348	3R_16954348_SNP [dm3] 3R_21128626_SNP [dm6]	T	C	1.666e^-4	0.384	SYNONYMOUS_CODING CG5793 DOWNSTREAM Obp93a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25635522	3R_25635522_SNP [dm3] 3R_29809800_SNP [dm6]	C	T	1.671e^-4	0.385	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2527302	3L_2527302_SNP [dm3] 3L_2527302_SNP [dm6]	A	C	1.673e^-4	0.385	UPSTREAM CG32295 INTRON Spn
3L	14908008	3L_14908008_SNP [dm3] 3L_14914908_SNP [dm6]	A	T	1.679e^-4	0.385	INTRON DCX-EMAP
2L	19003351	2L_19003351_DEL [dm3] 2L_19003351_DEL [dm6]	GGGCATTCG	G	1.679e^-4	0.385	UPSTREAM CG31793 DOWNSTREAM CG31792 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10004280	3R_10004280_SNP [dm3] 3R_14178558_SNP [dm6]	A	T	1.680e^-4	0.385	INTRON Dop1R1
X	8271967	X_8271967_SNP [dm3] X_8377934_SNP [dm6]	C	T	1.684e^-4	0.385	INTERGENIC
3R	10901295	3R_10901295_SNP [dm3] 3R_15075573_SNP [dm6]	T	A	1.685e^-4	0.385	INTRON dpr9
2R	14269142	2R_14269142_SNP [dm3] 2R_18381637_SNP [dm6]	G	A	1.693e^-4	0.386	INTRON CG43202	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11234779	3L_11234779_DEL [dm3] 3L_11241679_DEL [dm6]	CAC	C	1.695e^-4	0.386	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9161612	2L_9161612_SNP [dm3] 2L_9161612_SNP [dm6]	G	A	1.695e^-4	0.386	SYNONYMOUS_CODING CG32982
2R	7332418	2R_7332418_SNP [dm3] 2R_11444913_SNP [dm6]	T	A	1.701e^-4	0.387	INTRON qvr
3R	2852632	3R_2852632_DEL [dm3] 3R_7026910_DEL [dm6]	CACGTTCCCATTCAGCGCCT...	C	1.712e^-4	0.388	INTERGENIC
2L	10072028	2L_10072028_SNP [dm3] 2L_10072028_SNP [dm6]	G	C	1.713e^-4	0.388	INTRON CG44153
3L	9749386	3L_9749386_SNP [dm3] 3L_9756286_SNP [dm6]	G	A	1.715e^-4	0.388	INTRON CG42268
3R	10140762	3R_10140762_SNP [dm3] 3R_14315040_SNP [dm6]	T	C	1.715e^-4	0.388	SYNONYMOUS_CODING Crz UPSTREAM pr-set7 DOWNSTREAM CG31321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26946237	3R_26946237_SNP [dm3] 3R_31120515_SNP [dm6]	C	G	1.716e^-4	0.388	INTERGENIC
X	15578115	X_15578115_SNP [dm3] X_15684082_SNP [dm6]	G	A	1.722e^-4	0.389	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18045745	2R_18045745_INS [dm3] 2R_22158240_INS [dm6]	G	GTGG	1.725e^-4	0.389	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25121957	3R_25121957_SNP [dm3] 3R_29296235_SNP [dm6]	T	C	1.725e^-4	0.389	NON_SYNONYMOUS_CODING CG14506
3L	11087341	3L_11087341_SNP [dm3] 3L_11094241_SNP [dm6]	A	T	1.727e^-4	0.389	NON_SYNONYMOUS_CODING CG6279	TF binding site mE1_TFBS_chinmo
X	14858891	X_14858891_SNP [dm3] X_14964858_SNP [dm6]	T	C	1.729e^-4	0.389	INTRON eag
2L	13753184	2L_13753184_DEL [dm3] 2L_13753184_DEL [dm6]	GAGG	G	1.731e^-4	0.389	INTRON CR44846 & 1 other
3L	19227464	3L_19227464_SNP [dm3] 3L_19234364_SNP [dm6]	A	T	1.735e^-4	0.389	INTRON fz2	TF binding site mE1_TFBS_Trl
2R	1148450	2R_1148450_DEL [dm3] 2R_5260945_DEL [dm6]	TT	T	1.736e^-4	0.389	INTRON d4	transposable element FlyBase
3L	15481231	3L_15481231_SNP [dm3] 3L_15488131_SNP [dm6]	C	T	1.740e^-4	0.389	INTERGENIC
3R	15669339	3R_15669339_SNP [dm3] 3R_19843617_SNP [dm6]	C	T	1.745e^-4	0.389	INTERGENIC
2R	8914421	2R_8914421_DEL [dm3] 2R_13026916_DEL [dm6]	GGAG	G	1.747e^-4	0.389	INTERGENIC
3L	12564113	3L_12564113_SNP [dm3] 3L_12571013_SNP [dm6]	A	G	1.753e^-4	0.389	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6394234	2R_6394234_SNP [dm3] 2R_10506729_SNP [dm6]	T	C	1.754e^-4	0.389	DOWNSTREAM lola INTRON lola
3R	16156318	3R_16156318_SNP [dm3] 3R_20330596_SNP [dm6]	G	A	1.754e^-4	0.389	UTR_3_PRIME Sirt2 DOWNSTREAM Sirt2	TF binding site mE1_TFBS_cad
2L	12280690	2L_12280690_SNP [dm3] 2L_12280690_SNP [dm6]	A	C	1.755e^-4	0.389	INTRON aret	TF binding site mE1_TFBS_sbb
3L	11087462	3L_11087462_SNP [dm3] 3L_11094362_SNP [dm6]	G	A	1.755e^-4	0.389	SPLICE_SITE_REGION CG6279 UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3R	16156322	3R_16156322_SNP [dm3] 3R_20330600_SNP [dm6]	A	G	1.756e^-4	0.389	UTR_3_PRIME Sirt2 DOWNSTREAM Sirt2	TF binding site mE1_TFBS_cad
3L	13190768	3L_13190768_SNP [dm3] 3L_13197668_SNP [dm6]	T	C	1.758e^-4	0.389	INTERGENIC	silencer mE1_HDAC_PRE
3L	4313317	3L_4313317_SNP [dm3] 3L_4313317_SNP [dm6]	A	T	1.761e^-4	0.389	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11098538	X_11098538_DEL [dm3] X_11204505_DEL [dm6]	TT	T	1.762e^-4	0.389	INTERGENIC
3L	4319381	3L_4319381_SNP [dm3] 3L_4319381_SNP [dm6]	T	C	1.765e^-4	0.389	DOWNSTREAM Claspin INTRON CG32250	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9819302	3L_9819302_SNP [dm3] 3L_9826202_SNP [dm6]	T	G	1.771e^-4	0.39	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14523110	2R_14523110_SNP [dm3] 2R_18635605_SNP [dm6]	A	T	1.771e^-4	0.39	INTRON CG30122	TF binding site BDTNP1_TFBS_dl
2L	972842	2L_972842_SNP [dm3] 2L_972842_SNP [dm6]	A	G	1.773e^-4	0.39	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3893954	3L_3893954_SNP [dm3] 3L_3893954_SNP [dm6]	A	C	1.784e^-4	0.391	UPSTREAM snRNA:U11 INTRON Fie
2R	4084560	2R_4084560_SNP [dm3] 2R_8197055_SNP [dm6]	G	C	1.785e^-4	0.391	INTRON LRP1
2R	18742646	2R_18742646_SNP [dm3] 2R_22855123_SNP [dm6]	G	C	1.786e^-4	0.391	DOWNSTREAM inaD INTRON RpL23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3140137	3L_3140137_SNP [dm3] 3L_3140137_SNP [dm6]	C	G	1.791e^-4	0.391	UPSTREAM CG11537 INTRON CG11537
2R	20128902	2R_20128902_SNP [dm3] 2R_24241379_SNP [dm6]	G	A	1.791e^-4	0.391	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23275917	3R_23275917_SNP [dm3] 3R_27450195_SNP [dm6]	C	T	1.802e^-4	0.393	INTERGENIC
X	5237121	X_5237121_SNP [dm3] X_5343088_SNP [dm6]	C	A	1.802e^-4	0.393	INTRON SK
3L	16815654	3L_16815654_SNP [dm3] 3L_16822554_SNP [dm6]	A	G	1.804e^-4	0.393	INTRON CG13024
3L	2404684	3L_2404684_SNP [dm3] 3L_2404684_SNP [dm6]	G	A	1.805e^-4	0.393	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17515450	2R_17515450_SNP [dm3] 2R_21627945_SNP [dm6]	G	A	1.807e^-4	0.393	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2538015	3L_2538015_SNP [dm3] 3L_2538015_SNP [dm6]	G	C	1.810e^-4	0.393	INTRON Spn
3R	26658101	3R_26658101_DEL [dm3] 3R_30832379_DEL [dm6]	AAA	T	1.822e^-4	0.394	INTRON CG15544
2R	13020051	2R_13020051_SNP [dm3] 2R_17132546_SNP [dm6]	C	T	1.822e^-4	0.394	UPSTREAM CR45273 & 1 other INTERGENIC
X	10001653	X_10001653_SNP [dm3] X_10107620_SNP [dm6]	A	G	1.829e^-4	0.394	INTRON RhoU
3R	26557062	3R_26557062_SNP [dm3] 3R_30731340_SNP [dm6]	A	G	1.829e^-4	0.394	UPSTREAM CG11313 INTERGENIC
3L	19214090	3L_19214090_DEL [dm3] 3L_19220990_DEL [dm6]	TGGGCCTAAA	C	1.830e^-4	0.394	INTRON fz2
X	19443850	X_19443850_SNP [dm3] X_19549817_SNP [dm6]	C	T	1.830e^-4	0.394	INTERGENIC
X	5261542	X_5261542_INS [dm3] X_5367509_INS [dm6]	T	TT	1.834e^-4	0.394	INTRON SK
X	14227489	X_14227489_SNP [dm3] X_14333456_SNP [dm6]	T	C	1.834e^-4	0.394	INTRON dpr8
X	12395069	X_12395069_SNP [dm3] X_12501036_SNP [dm6]	C	T	1.840e^-4	0.394	INTRON CG2556
2L	12364998	2L_12364998_SNP [dm3] 2L_12364998_SNP [dm6]	A	G	1.841e^-4	0.394	INTRON bru-2
X	1666715	X_1666715_SNP [dm3] X_1772682_SNP [dm6]	A	G	1.841e^-4	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14962816	2R_14962816_DEL [dm3] 2R_19075311_DEL [dm6]	AA	A	1.841e^-4	0.394	INTRON 5-HT1A
3L	7025174	3L_7025174_INS [dm3] 3L_7032074_INS [dm6]	C	CAAAC	1.842e^-4	0.394	INTRON Mp
3L	19272236	3L_19272236_SNP [dm3] 3L_19279136_SNP [dm6]	A	C	1.844e^-4	0.394	DOWNSTREAM CG14089 INTRON CG14086
X	1172932	X_1172932_DEL [dm3] X_1278899_DEL [dm6]	TTAGAT	T	1.856e^-4	0.395	INTERGENIC
3L	16321693	3L_16321693_DEL [dm3] 3L_16328593_DEL [dm6]	GCAATCCAG	G	1.859e^-4	0.395	UPSTREAM CG13058 & 1 other INTERGENIC
3L	20300945	3L_20300945_SNP [dm3] 3L_20307845_SNP [dm6]	T	C	1.862e^-4	0.395	NON_SYNONYMOUS_CODING CG6597	TF binding site BDTNP1_TFBS_twi
3R	5436955	3R_5436955_SNP [dm3] 3R_9611233_SNP [dm6]	G	A	1.867e^-4	0.395	INTRON CG8312	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14147650	3R_14147650_SNP [dm3] 3R_18321928_SNP [dm6]	T	A	1.867e^-4	0.395	INTRON CG31235
3R	5808659	3R_5808659_SNP [dm3] 3R_9982937_SNP [dm6]	G	A	1.868e^-4	0.395	UTR_3_PRIME Art4 DOWNSTREAM Art4 INTRON Glut4EF
2R	13881626	2R_13881626_SNP [dm3] 2R_17994121_SNP [dm6]	A	T	1.871e^-4	0.395	INTRON dpr13
3L	18224275	3L_18224275_SNP [dm3] 3L_18231175_SNP [dm6]	G	C	1.875e^-4	0.395	INTERGENIC
2R	12461737	2R_12461737_SNP [dm3] 2R_16574232_SNP [dm6]	T	C	1.875e^-4	0.395	DOWNSTREAM CG8317 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn
3L	14380487	3L_14380487_SNP [dm3] 3L_14387387_SNP [dm6]	T	A	1.878e^-4	0.395	INTERGENIC
2L	17465339	2L_17465339_SNP [dm3] 2L_17465339_SNP [dm6]	C	A	1.878e^-4	0.395	INTRON BicD
X	20304305	X_20304305_SNP [dm3] X_20433278_SNP [dm6]	C	G	1.879e^-4	0.395	UPSTREAM CG1695 DOWNSTREAM mal INTERGENIC
3L	10531114	3L_10531114_INS [dm3] 3L_10538014_INS [dm6]	T	TCT	1.881e^-4	0.395	INTRON A2bp1
2R	7699585	2R_7699585_SNP [dm3] 2R_11812080_SNP [dm6]	A	G	1.884e^-4	0.395	UTR_3_PRIME ths DOWNSTREAM ths	TF binding site BDTNP1_TFBS_twi
3L	15938147	3L_15938147_DEL [dm3] 3L_15945047_DEL [dm6]	AA	A	1.887e^-4	0.395	INTRON Pka-C3
3L	13257078	3L_13257078_SNP [dm3] 3L_13263978_SNP [dm6]	A	T	1.890e^-4	0.395	INTRON caps	enhancer mE1_CBP_Enhancers
2L	15365520	2L_15365520_SNP [dm3] 2L_15365520_SNP [dm6]	T	G	1.891e^-4	0.395	INTERGENIC
3R	15712772	3R_15712772_SNP [dm3] 3R_19887050_SNP [dm6]	G	A	1.891e^-4	0.395	INTRON ninaE	TF binding site mE1_TFBS_cad
2L	7267421	2L_7267421_DEL [dm3] 2L_7267421_DEL [dm6]	AGCTCCA	A	1.897e^-4	0.395	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15885498	3R_15885498_SNP [dm3] 3R_20059776_SNP [dm6]	A	T	1.898e^-4	0.395	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
3R	15886409	3R_15886409_DEL [dm3] 3R_20060687_DEL [dm6]	GCAGGGGATTTGGGTTGCTT...	G	1.898e^-4	0.395	UPSTREAM CG4390 INTERGENIC
3R	16113451	3R_16113451_DEL [dm3] 3R_20287729_DEL [dm6]	ATG	A	1.901e^-4	0.395	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6091975	X_6091975_SNP [dm3] X_6197942_SNP [dm6]	G	A	1.901e^-4	0.395	SYNONYMOUS_CODING CG32751
X	16035804	X_16035804_DEL [dm3] X_16141771_DEL [dm6]	CC	C	1.904e^-4	0.395	INTRON disco-r
3L	18200259	3L_18200259_SNP [dm3] 3L_18207159_SNP [dm6]	G	A	1.905e^-4	0.395	INTERGENIC
2R	4868418	2R_4868418_DEL [dm3] 2R_8980913_DEL [dm6]	ATAAAA	G	1.905e^-4	0.395	INTRON CG8213	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4541780	3L_4541780_SNP [dm3] 3L_4541780_SNP [dm6]	T	C	1.908e^-4	0.395	UPSTREAM CG11357 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	11517515	X_11517515_DEL [dm3] X_11623482_DEL [dm6]	TATT	T	1.910e^-4	0.395	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10556671	2R_10556671_SNP [dm3] 2R_14669166_SNP [dm6]	T	C	1.911e^-4	0.395	INTRON CG12866	TF binding site BDTNP1_TFBS_hb
2L	1285067	2L_1285067_SNP [dm3] 2L_1285067_SNP [dm6]	T	A	1.914e^-4	0.395	INTRON robo3
3R	14843269	3R_14843269_SNP [dm3] 3R_19017547_SNP [dm6]	T	G	1.914e^-4	0.395	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12065733	3L_12065733_SNP [dm3] 3L_12072633_SNP [dm6]	T	A	1.916e^-4	0.395	INTRON Sema-5c
3L	4168211	3L_4168211_SNP [dm3] 3L_4168211_SNP [dm6]	T	A	1.917e^-4	0.395	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	9552513	3R_9552513_DEL [dm3] 3R_13726791_DEL [dm6]	AA	A	1.920e^-4	0.395	INTRON CG34383
3L	18165901	3L_18165901_DEL [dm3] 3L_18172801_DEL [dm6]	CT	C	1.927e^-4	0.395	INTRON W	TF binding site BDTNP1_TFBS_dl
3L	18165904	3L_18165904_SNP [dm3] 3L_18172804_SNP [dm6]	A	C	1.927e^-4	0.395	INTRON W	TF binding site BDTNP1_TFBS_dl
3L	13257064	3L_13257064_INS [dm3] 3L_13263964_INS [dm6]	T	TT	1.928e^-4	0.395	INTRON caps	enhancer mE1_CBP_Enhancers
3L	17911039	3L_17911039_SNP [dm3] 3L_17917939_SNP [dm6]	T	C	1.929e^-4	0.395	INTERGENIC
2L	10668060	2L_10668060_SNP [dm3] 2L_10668060_SNP [dm6]	A	G	1.931e^-4	0.395	INTRON CG31871
3R	16823123	3R_16823123_SNP [dm3] 3R_20997401_SNP [dm6]	A	T	1.935e^-4	0.395	INTRON Calx
3L	14670092	3L_14670092_SNP [dm3] 3L_14676992_SNP [dm6]	A	G	1.942e^-4	0.396	INTRON ome & 1 other
3L	10682732	3L_10682732_DEL [dm3] 3L_10689632_DEL [dm6]	TT	T	1.943e^-4	0.396	UTR_3_PRIME simj DOWNSTREAM simj
3L	14375481	3L_14375481_SNP [dm3] 3L_14382381_SNP [dm6]	C	A	1.945e^-4	0.396	NON_SYNONYMOUS_CODING CG43120
3L	15785053	3L_15785053_SNP [dm3] 3L_15791953_SNP [dm6]	A	C	1.945e^-4	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20100027	2R_20100027_DEL [dm3] 2R_24212504_DEL [dm6]	TT	T	1.949e^-4	0.396	UTR_3_PRIME CG30419	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5416602	3L_5416602_DEL [dm3] 3L_5423502_DEL [dm6]	TGCTACCACTTT...	T	1.960e^-4	0.398	UPSTREAM CG34391 INTERGENIC
3L	11652860	3L_11652860_SNP [dm3] 3L_11659760_SNP [dm6]	C	T	1.961e^-4	0.398	INTRON CG32085
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	1.968e^-4	0.398	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2115682	2R_2115682_INS [dm3] 2R_6228177_INS [dm6]	A	AA	1.968e^-4	0.398	INTRON bin3
3L	18165911	3L_18165911_INS [dm3] 3L_18172811_INS [dm6]	T	TGT	1.969e^-4	0.398	INTRON W	TF binding site BDTNP1_TFBS_dl
X	16406616	X_16406616_SNP [dm3] X_16512583_SNP [dm6]	A	G	1.969e^-4	0.398	INTRON para
2L	6619033	2L_6619033_SNP [dm3] 2L_6619033_SNP [dm6]	C	T	1.974e^-4	0.398	UPSTREAM CR44913 INTRON CG11320
2L	4137848	2L_4137848_SNP [dm3] 2L_4137848_SNP [dm6]	C	T	1.977e^-4	0.398	INTERGENIC
3R	27056310	3R_27056310_INS [dm3] 3R_31230588_INS [dm6]	C	CT	1.982e^-4	0.399	UTR_3_PRIME CG12054	TF binding site mE1_TFBS_bab1
3R	15817086	3R_15817086_SNP [dm3] 3R_19991364_SNP [dm6]	T	A	1.990e^-4	0.4	INTRON Hs6st
3L	16294324	3L_16294324_SNP [dm3] 3L_16301224_SNP [dm6]	C	T	1.992e^-4	0.4	UPSTREAM CG4982 INTERGENIC
3L	4417389	3L_4417389_SNP [dm3] 3L_4417389_SNP [dm6]	G	A	1.994e^-4	0.4	INTRON DOR
X	14130133	X_14130133_SNP [dm3] X_14236100_SNP [dm6]	C	T	1.996e^-4	0.4	NON_SYNONYMOUS_CODING Fbxl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5483868	2L_5483868_DEL [dm3] 2L_5483868_DEL [dm6]	GCTCA	G	2.007e^-4	0.402	INTERGENIC	TF binding site mE1_TFBS_cad
X	12571009	X_12571009_DEL [dm3] X_12676976_DEL [dm6]	GTTGGTTGG	G	2.009e^-4	0.402	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
3R	15424031	3R_15424031_SNP [dm3] 3R_19598309_SNP [dm6]	G	T	2.010e^-4	0.402	SYNONYMOUS_CODING Cpr92A	TF binding site mE1_TFBS_cad
3R	8758246	3R_8758246_SNP [dm3] 3R_12932524_SNP [dm6]	C	T	2.015e^-4	0.402	INTRON beat-Vb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14146009	3L_14146009_SNP [dm3] 3L_14152909_SNP [dm6]	T	C	2.020e^-4	0.402	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12252446	2R_12252446_SNP [dm3] 2R_16364941_SNP [dm6]	A	T	2.021e^-4	0.402	UTR_5_PRIME CG15711 UPSTREAM CG15711	TF binding site mE1_TFBS_HSA
2L	13946164	2L_13946164_SNP [dm3] 2L_13946164_SNP [dm6]	A	G	2.021e^-4	0.402	INTRON Ance-3 & 1 other
X	12808664	X_12808664_SNP [dm3] X_12914631_SNP [dm6]	A	G	2.022e^-4	0.402	UPSTREAM CR45626 INTERGENIC
3L	16962535	3L_16962535_DEL [dm3] 3L_16969435_DEL [dm6]	TTAA	T	2.028e^-4	0.403	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
X	11924843	X_11924843_DEL [dm3] X_12030810_DEL [dm6]	CT	C	2.034e^-4	0.403	INTRON Cyp311a1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12407846	X_12407846_SNP [dm3] X_12513813_SNP [dm6]	A	G	2.034e^-4	0.403	INTRON CG2556	TF binding site mE1_TFBS_HSA
3L	14907998	3L_14907998_SNP [dm3] 3L_14914898_SNP [dm6]	T	C	2.040e^-4	0.403	INTRON DCX-EMAP
3R	15890580	3R_15890580_SNP [dm3] 3R_20064858_SNP [dm6]	G	A	2.040e^-4	0.403	INTERGENIC
X	5618645	X_5618645_DEL [dm3] X_5724612_DEL [dm6]	TT	T	2.049e^-4	0.404	INTRON CG32758
3L	8900580	3L_8900580_INS [dm3] 3L_8907480_INS [dm6]	T	TCATT	2.050e^-4	0.404	INTRON mfr
3L	10457744	3L_10457744_DEL [dm3] 3L_10464644_DEL [dm6]	AAAGTGAT	A	2.057e^-4	0.404	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTERGENIC
3R	16494117	3R_16494117_SNP [dm3] 3R_20668395_SNP [dm6]	A	G	2.059e^-4	0.404	INTERGENIC
3L	1227479	3L_1227479_SNP [dm3] 3L_1227479_SNP [dm6]	T	C	2.060e^-4	0.404	UPSTREAM LysS INTRON mwh
3R	9888619	3R_9888619_DEL [dm3] 3R_14062897_DEL [dm6]	GTACCGAGCGGAAATTTTGA...	G	2.063e^-4	0.404	INTRON foxo
2R	17140760	2R_17140760_SNP [dm3] 2R_21253255_SNP [dm6]	T	C	2.063e^-4	0.404	INTERGENIC
3R	13977261	3R_13977261_SNP [dm3] 3R_18151539_SNP [dm6]	A	C	2.066e^-4	0.404	UPSTREAM CG14316 INTERGENIC
X	7482403	X_7482403_SNP [dm3] X_7588370_SNP [dm6]	C	T	2.068e^-4	0.404	INTERGENIC	regulatory region REDfly_CRMs
3L	12835297	3L_12835297_SNP [dm3] 3L_12842197_SNP [dm6]	A	C	2.071e^-4	0.404	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	5384318	2L_5384318_DEL [dm3] 2L_5384318_DEL [dm6]	ATTGTGTTATTCGGTGAA...	A	2.073e^-4	0.404	INTERGENIC
3R	19819157	3R_19819157_DEL [dm3] 3R_23993435_DEL [dm6]	CT	C	2.083e^-4	0.404	UPSTREAM Rab7 & 1 other INTRON Rab7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5438728	3R_5438728_DEL [dm3] 3R_9613006_DEL [dm6]	CC	C	2.083e^-4	0.404	INTRON CG8312
3L	13255679	3L_13255679_SNP [dm3] 3L_13262579_SNP [dm6]	A	G	2.088e^-4	0.404	INTRON caps
X	7489293	X_7489293_DEL [dm3] X_7595260_DEL [dm6]	GG	G	2.089e^-4	0.404	INTERGENIC	regulatory region REDfly_CRMs
2L	6638296	2L_6638296_SNP [dm3] 2L_6638296_SNP [dm6]	T	C	2.089e^-4	0.404	SYNONYMOUS_CODING CG31635	TF binding site mE1_TFBS_chinmo
X	20385882	X_20385882_DEL [dm3] X_20514855_DEL [dm6]	CTCCATC	C	2.093e^-4	0.404	UTR_3_PRIME CG1812
3L	6439795	3L_6439795_SNP [dm3] 3L_6446695_SNP [dm6]	A	G	2.094e^-4	0.404	INTRON CG42747
2L	12315719	2L_12315719_SNP [dm3] 2L_12315719_SNP [dm6]	T	A	2.095e^-4	0.404	DOWNSTREAM CR45282 & 1 other INTERGENIC
X	15558234	X_15558234_DEL [dm3] X_15664201_DEL [dm6]	GA	G	2.095e^-4	0.404	DOWNSTREAM CG8119 INTRON CR43299 EXON CR43299	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8756347	3L_8756347_SNP [dm3] 3L_8763247_SNP [dm6]	A	T	2.096e^-4	0.404	INTRON Fhos
3R	27230771	3R_27230771_DEL [dm3] 3R_31405049_DEL [dm6]	AGAAA	A	2.098e^-4	0.404	UPSTREAM Gprk2 & 1 other INTRON CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14078355	2R_14078355_SNP [dm3] 2R_18190850_SNP [dm6]	G	A	2.099e^-4	0.404	INTRON CG33958
3R	15884449	3R_15884449_SNP [dm3] 3R_20058727_SNP [dm6]	C	A	2.104e^-4	0.404	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3L	11757062	3L_11757062_SNP [dm3] 3L_11763962_SNP [dm6]	G	A	2.105e^-4	0.404	INTRON CG6024	TF binding site BDTNP1_TFBS_dl
3L	16741626	3L_16741626_SNP [dm3] 3L_16748526_SNP [dm6]	C	T	2.114e^-4	0.404	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14850728	2L_14850728_SNP [dm3] 2L_14850728_SNP [dm6]	T	C	2.115e^-4	0.404	INTRON CG15279
3R	12953792	3R_12953792_SNP [dm3] 3R_17128070_SNP [dm6]	G	C	2.117e^-4	0.404	SYNONYMOUS_CODING CG31269 UPSTREAM CG31265 & 1 other
X	5412221	X_5412221_SNP [dm3] X_5518188_SNP [dm6]	T	A	2.118e^-4	0.404	UTR_3_PRIME CG12730 UPSTREAM CR45518	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	24772468	3R_24772468_INS [dm3] 3R_28946746_INS [dm6]	TG	GCCT	2.121e^-4	0.404	INTRON CG14521
X	7489066	X_7489066_SNP [dm3] X_7595033_SNP [dm6]	T	C	2.124e^-4	0.404	INTERGENIC	regulatory region REDfly_CRMs
3L	12321291	3L_12321291_DEL [dm3] 3L_12328191_DEL [dm6]	AATACTA	A	2.129e^-4	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15175810	3R_15175810_SNP [dm3] 3R_19350088_SNP [dm6]	G	A	2.129e^-4	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15813084	3R_15813084_SNP [dm3] 3R_19987362_SNP [dm6]	G	A	2.130e^-4	0.404	INTRON Hs6st
2L	12227951	2L_12227951_INS [dm3] 2L_12227951_INS [dm6]	G	GTGTACGTAAATAGGGTATA...	2.130e^-4	0.404	INTRON aret
2L	7640626	2L_7640626_SNP [dm3] 2L_7640626_SNP [dm6]	T	C	2.134e^-4	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13190356	3L_13190356_SNP [dm3] 3L_13197256_SNP [dm6]	C	A	2.137e^-4	0.404	INTERGENIC
3L	14378232	3L_14378232_DEL [dm3] 3L_14385132_DEL [dm6]	GAACTTCGATTTTAAGGGG...	G	2.138e^-4	0.404	INTERGENIC
X	8201498	X_8201498_SNP [dm3] X_8307465_SNP [dm6]	A	T	2.143e^-4	0.404	INTRON nAChRalpha3
3L	3952477	3L_3952477_SNP [dm3] 3L_3952477_SNP [dm6]	C	G	2.146e^-4	0.404	UTR_5_PRIME CG14984 UPSTREAM CG14984
2L	14078423	2L_14078423_SNP [dm3] 2L_14078423_SNP [dm6]	C	A	2.146e^-4	0.404	INTRON nAChRalpha5
X	7293956	X_7293956_DEL [dm3] X_7399923_DEL [dm6]	TTTT	G	2.153e^-4	0.404	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sbb
3L	15261193	3L_15261193_SNP [dm3] 3L_15268093_SNP [dm6]	C	A	2.160e^-4	0.404	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	11362003	3L_11362003_SNP [dm3] 3L_11368903_SNP [dm6]	G	A	2.161e^-4	0.404	INTERGENIC
3L	9598762	3L_9598762_SNP [dm3] 3L_9605662_SNP [dm6]	T	C	2.163e^-4	0.404	INTRON CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7836080	3L_7836080_SNP [dm3] 3L_7842980_SNP [dm6]	T	A	2.164e^-4	0.404	INTRON Pdp1	regulatory region REDfly_CRMs
3R	14841118	3R_14841118_SNP [dm3] 3R_19015396_SNP [dm6]	T	C	2.167e^-4	0.404	INTRON gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17632644	3R_17632644_SNP [dm3] 3R_21806922_SNP [dm6]	C	T	2.168e^-4	0.404	INTRON CASK
3R	7354423	3R_7354423_SNP [dm3] 3R_11528701_SNP [dm6]	G	A	2.169e^-4	0.404	INTERGENIC
3L	12109667	3L_12109667_SNP [dm3] 3L_12116567_SNP [dm6]	C	T	2.169e^-4	0.404	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11087403	3L_11087403_SNP [dm3] 3L_11094303_SNP [dm6]	G	T	2.173e^-4	0.404	NON_SYNONYMOUS_CODING CG6279	TF binding site mE1_TFBS_chinmo

Missing results

By genomic position
Variant impact
Gene name

SegregVariants_3L phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results