DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.170e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05848
In_3R_K	1.139e-11

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	10.7304	0.0047

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2815 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	19285277	2R_19285277_SNP [dm3] 2R_23397754_SNP [dm6]	G	A	6.585e^-7	0.541	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
2L	9396702	2L_9396702_SNP [dm3] 2L_9396702_SNP [dm6]	C	T	1.276e^-6	0.541	DOWNSTREAM CG4438 INTRON Shawl
2L	9396551	2L_9396551_SNP [dm3] 2L_9396551_SNP [dm6]	G	A	1.331e^-6	0.541	DOWNSTREAM CG4438 INTRON Shawl
3R	9320040	3R_9320040_SNP [dm3] 3R_13494318_SNP [dm6]	G	A	3.580e^-6	0.541	INTERGENIC
X	8449016	X_8449016_DEL [dm3] X_8554983_DEL [dm6]	TT	T	3.606e^-6	0.541	UTR_3_PRIME Nrg DOWNSTREAM IntS4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3R	19919356	3R_19919356_SNP [dm3] 3R_24093634_SNP [dm6]	A	G	3.941e^-6	0.541	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3L	13353723	3L_13353723_SNP [dm3] 3L_13360623_SNP [dm6]	T	A	4.394e^-6	0.541	INTERGENIC
2L	17896790	2L_17896790_SNP [dm3] 2L_17896790_SNP [dm6]	A	T	4.690e^-6	0.541	INTERGENIC
2L	9170893	2L_9170893_SNP [dm3] 2L_9170893_SNP [dm6]	T	C	5.010e^-6	0.541	INTRON tai
3R	22354597	3R_22354597_DEL [dm3] 3R_26528875_DEL [dm6]	GG	G	5.014e^-6	0.541	INTRON plum
2R	18941838	2R_18941838_SNP [dm3] 2R_23054315_SNP [dm6]	T	A	5.046e^-6	0.541	INTERGENIC
3L	5249505	3L_5249505_SNP [dm3] 3L_5256405_SNP [dm6]	C	T	5.320e^-6	0.541	INTRON shep
2R	1349829	2R_1349829_SNP [dm3] 2R_5462324_SNP [dm6]	G	C	5.379e^-6	0.541	INTERGENIC	transposable element FlyBase
3L	4717977	3L_4717977_SNP [dm3] 3L_4717977_SNP [dm6]	C	G	5.492e^-6	0.541	INTRON RhoGEF64C
3L	10503033	3L_10503033_SNP [dm3] 3L_10509933_SNP [dm6]	G	A	5.546e^-6	0.541	INTRON A2bp1
3L	5522754	3L_5522754_SNP [dm3] 3L_5529654_SNP [dm6]	C	T	6.126e^-6	0.541	UPSTREAM Lkr INTERGENIC
2L	9839544	2L_9839544_SNP [dm3] 2L_9839544_SNP [dm6]	T	G	6.249e^-6	0.541	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
3R	18449823	3R_18449823_SNP [dm3] 3R_22624101_SNP [dm6]	A	G	6.437e^-6	0.541	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	10584402	2R_10584402_DEL [dm3] 2R_14696897_DEL [dm6]	ATGCAAGCATCATAA...	A	6.666e^-6	0.541	INTRON mspo
2L	17890074	2L_17890074_SNP [dm3] 2L_17890074_SNP [dm6]	C	T	6.672e^-6	0.541	INTERGENIC
3R	26539873	3R_26539873_SNP [dm3] 3R_30714151_SNP [dm6]	A	G	6.739e^-6	0.541	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10705613	2L_10705613_SNP [dm3] 2L_10705613_SNP [dm6]	A	G	6.804e^-6	0.541	DOWNSTREAM CG6415 INTRON Lip2
3R	19919361	3R_19919361_SNP [dm3] 3R_24093639_SNP [dm6]	C	G	6.833e^-6	0.541	INTRON 4EHP	TF binding site mE1_TFBS_HSA
X	5925768	X_5925768_SNP [dm3] X_6031735_SNP [dm6]	A	T	6.998e^-6	0.541	INTERGENIC	silencer mE1_HDAC_PRE
2L	10705646	2L_10705646_SNP [dm3] 2L_10705646_SNP [dm6]	C	A	7.483e^-6	0.541	DOWNSTREAM CG6415 INTRON Lip2
3R	9325710	3R_9325710_DEL [dm3] 3R_13499988_DEL [dm6]	TG	T	7.493e^-6	0.541	INTERGENIC
2L	12397204	2L_12397204_SNP [dm3] 2L_12397204_SNP [dm6]	A	T	7.988e^-6	0.549	UTR_3_PRIME bru-2
2L	10705607	2L_10705607_SNP [dm3] 2L_10705607_SNP [dm6]	C	T	8.194e^-6	0.549	DOWNSTREAM CG6415 INTRON Lip2
3R	5145301	3R_5145301_SNP [dm3] 3R_9319579_SNP [dm6]	T	G	8.665e^-6	0.56	INTRON CG8861
2L	17884043	2L_17884043_SNP [dm3] 2L_17884043_SNP [dm6]	C	T	9.037e^-6	0.562	INTERGENIC
2R	18941876	2R_18941876_SNP [dm3] 2R_23054353_SNP [dm6]	G	A	9.285e^-6	0.562	INTERGENIC
3L	17612801	3L_17612801_SNP [dm3] 3L_17619701_SNP [dm6]	C	T	9.695e^-6	0.568	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	22063003	2L_22063003_INS [dm3] 2L_22063003_INS [dm6]	A	AA	1.067e^-5	0.573	INTERGENIC
2L	17890082	2L_17890082_SNP [dm3] 2L_17890082_SNP [dm6]	A	G	1.073e^-5	0.573	INTERGENIC
3L	15855565	3L_15855565_SNP [dm3] 3L_15862465_SNP [dm6]	C	T	1.127e^-5	0.573	DOWNSTREAM pHCl INTRON pHCl
2R	2774803	2R_2774803_SNP [dm3] 2R_6887298_SNP [dm6]	G	C	1.176e^-5	0.573	NON_SYNONYMOUS_CODING Spn42De
3L	10503135	3L_10503135_SNP [dm3] 3L_10510035_SNP [dm6]	T	C	1.193e^-5	0.573	INTRON A2bp1
3R	7687403	3R_7687403_SNP [dm3] 3R_11861681_SNP [dm6]	A	T	1.200e^-5	0.573	INTRON CG6959
3R	9886639	3R_9886639_DEL [dm3] 3R_14060917_DEL [dm6]	AA	T	1.207e^-5	0.573	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	18526806	3R_18526806_SNP [dm3] 3R_22701084_SNP [dm6]	A	G	1.302e^-5	0.573	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
2R	4577936	2R_4577936_SNP [dm3] 2R_8690431_SNP [dm6]	G	T	1.309e^-5	0.573	INTERGENIC
2L	8060382	2L_8060382_SNP [dm3] 2L_8060382_SNP [dm6]	G	A	1.348e^-5	0.573	SYNONYMOUS_CODING poe
3R	27431292	3R_27431292_SNP [dm3] 3R_31605570_SNP [dm6]	G	T	1.348e^-5	0.573	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	10503050	3L_10503050_SNP [dm3] 3L_10509950_SNP [dm6]	T	C	1.355e^-5	0.573	INTRON A2bp1
3R	9226136	3R_9226136_DEL [dm3] 3R_13400414_DEL [dm6]	TTAGTTAT	T	1.429e^-5	0.573	INTRON CG9796
3L	10503024	3L_10503024_INS [dm3] 3L_10509924_INS [dm6]	G	GCATTT	1.448e^-5	0.573	INTRON A2bp1
X	11003989	X_11003989_DEL [dm3] X_11109956_DEL [dm6]	TCTGCCC	G	1.494e^-5	0.573	INTRON Hsp60	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	17216457	3L_17216457_SNP [dm3] 3L_17223357_SNP [dm6]	T	A	1.540e^-5	0.573	INTRON Rbp6
3L	5740815	3L_5740815_SNP [dm3] 3L_5747715_SNP [dm6]	G	A	1.555e^-5	0.573	UTR_3_PRIME sif
3L	15855570	3L_15855570_SNP [dm3] 3L_15862470_SNP [dm6]	T	A	1.623e^-5	0.573	DOWNSTREAM pHCl INTRON pHCl
2L	16571455	2L_16571455_SNP [dm3] 2L_16571455_SNP [dm6]	G	A	1.635e^-5	0.573	INTRON CG42389
2R	8554001	2R_8554001_SNP [dm3] 2R_12666496_SNP [dm6]	C	A	1.669e^-5	0.573	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_bab1
2R	3812654	2R_3812654_SNP [dm3] 2R_7925149_SNP [dm6]	A	T	1.722e^-5	0.573	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11871932	2L_11871932_SNP [dm3] 2L_11871932_SNP [dm6]	T	C	1.726e^-5	0.573	INTRON Pde1c
2R	17070153	2R_17070153_SNP [dm3] 2R_21182648_SNP [dm6]	T	C	1.734e^-5	0.573	UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25978234	3R_25978234_SNP [dm3] 3R_30152512_SNP [dm6]	G	A	1.751e^-5	0.573	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9099916	3R_9099916_SNP [dm3] 3R_13274194_SNP [dm6]	C	G	1.759e^-5	0.573	INTERGENIC
X	12377374	X_12377374_SNP [dm3] X_12483341_SNP [dm6]	C	T	1.771e^-5	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9128501	2R_9128501_SNP [dm3] 2R_13240996_SNP [dm6]	A	G	1.852e^-5	0.585	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9295709	3R_9295709_SNP [dm3] 3R_13469987_SNP [dm6]	A	T	1.895e^-5	0.585	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10605253	2R_10605253_SNP [dm3] 2R_14717748_SNP [dm6]	C	A	1.910e^-5	0.585	INTERGENIC
3L	14692391	3L_14692391_SNP [dm3] 3L_14699291_SNP [dm6]	G	A	1.962e^-5	0.585	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG17177 INTRON ome
X	18065671	X_18065671_SNP [dm3] X_18171638_SNP [dm6]	C	T	1.982e^-5	0.585	UTR_3_PRIME Frq1
3R	19919315	3R_19919315_SNP [dm3] 3R_24093593_SNP [dm6]	G	A	2.050e^-5	0.585	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10503022	3L_10503022_SNP [dm3] 3L_10509922_SNP [dm6]	A	T	2.091e^-5	0.585	INTRON A2bp1
3L	13353696	3L_13353696_SNP [dm3] 3L_13360596_SNP [dm6]	T	A	2.098e^-5	0.585	INTERGENIC
2L	10721693	2L_10721693_SNP [dm3] 2L_10721693_SNP [dm6]	C	A	2.102e^-5	0.585	INTERGENIC
3L	747152	3L_747152_SNP [dm3] 3L_747152_SNP [dm6]	T	A	2.132e^-5	0.585	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9099940	3R_9099940_SNP [dm3] 3R_13274218_SNP [dm6]	T	C	2.151e^-5	0.585	INTERGENIC
2R	6263633	2R_6263633_SNP [dm3] 2R_10376128_SNP [dm6]	T	G	2.208e^-5	0.592	DOWNSTREAM Ir47b & 1 other INTRON CG42732
2L	10705633	2L_10705633_SNP [dm3] 2L_10705633_SNP [dm6]	T	C	2.272e^-5	0.6	DOWNSTREAM CG6415 INTRON Lip2
3R	24508657	3R_24508657_SNP [dm3] 3R_28682935_SNP [dm6]	G	A	2.341e^-5	0.6	INTRON CG9990	TF binding site BDTNP1_TFBS_z
3R	19919338	3R_19919338_SNP [dm3] 3R_24093616_SNP [dm6]	A	C	2.401e^-5	0.6	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9172081	2L_9172081_SNP [dm3] 2L_9172081_SNP [dm6]	G	A	2.474e^-5	0.6	INTRON tai
3L	16954178	3L_16954178_SNP [dm3] 3L_16961078_SNP [dm6]	C	T	2.478e^-5	0.6	INTRON Nc73EF
2L	10705624	2L_10705624_SNP [dm3] 2L_10705624_SNP [dm6]	C	T	2.581e^-5	0.6	DOWNSTREAM CG6415 INTRON Lip2
3R	19919350	3R_19919350_SNP [dm3] 3R_24093628_SNP [dm6]	A	G	2.593e^-5	0.6	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12564163	3R_12564163_SNP [dm3] 3R_16738441_SNP [dm6]	A	G	2.597e^-5	0.6	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10503194	3L_10503194_SNP [dm3] 3L_10510094_SNP [dm6]	G	A	2.601e^-5	0.6	INTRON A2bp1
3L	8330183	3L_8330183_SNP [dm3] 3L_8337083_SNP [dm6]	A	C	2.605e^-5	0.6	INTRON Cpr66Cb
2L	12397211	2L_12397211_SNP [dm3] 2L_12397211_SNP [dm6]	C	A	2.625e^-5	0.6	UTR_3_PRIME bru-2
3L	783346	3L_783346_INS [dm3] 3L_783346_INS [dm6]	C	CGC	2.639e^-5	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5530365	2R_5530365_SNP [dm3] 2R_9642860_SNP [dm6]	A	T	2.666e^-5	0.6	INTRON Mmp2
3R	12718689	3R_12718689_SNP [dm3] 3R_16892967_SNP [dm6]	C	A	2.693e^-5	0.6	UPSTREAM iab-8 INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13353416	3L_13353416_SNP [dm3] 3L_13360316_SNP [dm6]	A	C	2.719e^-5	0.6	INTERGENIC
3L	13353778	3L_13353778_SNP [dm3] 3L_13360678_SNP [dm6]	C	A	2.850e^-5	0.602	INTERGENIC
3L	5252865	3L_5252865_SNP [dm3] 3L_5259765_SNP [dm6]	T	C	2.870e^-5	0.602	INTRON shep
3L	5642397	3L_5642397_SNP [dm3] 3L_5649297_SNP [dm6]	T	A	2.887e^-5	0.602	UTR_3_PRIME Blimp-1 DOWNSTREAM Blimp-1
2L	21793557	2L_21793557_SNP [dm3] 2L_21793557_SNP [dm6]	G	T	2.894e^-5	0.602	INTRON CG31612	TF binding site BDTNP1_TFBS_z
3L	8026140	3L_8026140_SNP [dm3] 3L_8033040_SNP [dm6]	T	C	2.924e^-5	0.602	INTRON nmo
X	11003998	X_11003998_INS [dm3] X_11109965_INS [dm6]	G	GCTCTTGG	2.977e^-5	0.602	INTRON Hsp60	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	10503136	3L_10503136_SNP [dm3] 3L_10510036_SNP [dm6]	C	A	2.986e^-5	0.602	INTRON A2bp1
3R	9312331	3R_9312331_INS [dm3] 3R_13486609_INS [dm6]	T	TT	2.987e^-5	0.602	INTERGENIC
3R	10420289	3R_10420289_SNP [dm3] 3R_14594567_SNP [dm6]	A	T	3.064e^-5	0.603	INTRON stumps	regulatory region REDfly_CRMs
2R	11521580	2R_11521580_SNP [dm3] 2R_15634075_SNP [dm6]	C	T	3.082e^-5	0.603	INTRON CG42524
3L	12310472	3L_12310472_SNP [dm3] 3L_12317372_SNP [dm6]	C	G	3.138e^-5	0.603	INTERGENIC
3R	25315206	3R_25315206_SNP [dm3] 3R_29489484_SNP [dm6]	A	C	3.177e^-5	0.603	UTR_5_PRIME CG2006 UPSTREAM CG2321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13857300	2R_13857300_SNP [dm3] 2R_17969795_SNP [dm6]	G	A	3.254e^-5	0.603	INTERGENIC
3R	12718931	3R_12718931_SNP [dm3] 3R_16893209_SNP [dm6]	T	G	3.270e^-5	0.603	INTRON iab-8 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23947382	3R_23947382_DEL [dm3] 3R_28121660_DEL [dm6]	AA	A	3.288e^-5	0.603	INTERGENIC
2R	10807808	2R_10807808_SNP [dm3] 2R_14920303_SNP [dm6]	A	G	3.324e^-5	0.603	INTRON CG10249	TF binding site mE1_TFBS_cnc
2L	8059899	2L_8059899_SNP [dm3] 2L_8059899_SNP [dm6]	T	C	3.348e^-5	0.603	SYNONYMOUS_CODING poe
3L	15284129	3L_15284129_SNP [dm3] 3L_15291029_SNP [dm6]	G	T	3.357e^-5	0.603	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15284131	3L_15284131_SNP [dm3] 3L_15291031_SNP [dm6]	A	T	3.362e^-5	0.603	INTERGENIC	TF binding site mE1_TFBS_inv
X	18064714	X_18064714_DEL [dm3] X_18170681_DEL [dm6]	AC	A	3.393e^-5	0.603	UTR_3_PRIME Frq1
3R	9187561	3R_9187561_SNP [dm3] 3R_13361839_SNP [dm6]	T	C	3.489e^-5	0.603	UTR_3_PRIME poly DOWNSTREAM poly
2L	4137420	2L_4137420_SNP [dm3] 2L_4137420_SNP [dm6]	T	A	3.503e^-5	0.603	INTERGENIC
2R	19285333	2R_19285333_SNP [dm3] 2R_23397810_SNP [dm6]	A	T	3.575e^-5	0.603	SPLICE_SITE_REGION CG3520 INTRON CG3520	TF binding site mE1_TFBS_chinmo
2R	20173697	2R_20173697_SNP [dm3] 2R_24286174_SNP [dm6]	C	T	3.575e^-5	0.603	INTRON nvy	TF binding site mE1_TFBS_chinmo
X	12264377	X_12264377_SNP [dm3] X_12370344_SNP [dm6]	C	T	3.592e^-5	0.603	INTERGENIC
3L	4717974	3L_4717974_SNP [dm3] 3L_4717974_SNP [dm6]	T	G	3.597e^-5	0.603	INTRON RhoGEF64C
2R	6545473	2R_6545473_SNP [dm3] 2R_10657968_SNP [dm6]	A	G	3.603e^-5	0.603	UPSTREAM CR44452 INTERGENIC
3R	23563740	3R_23563740_SNP [dm3] 3R_27738018_SNP [dm6]	G	A	3.796e^-5	0.628	INTRON Ets98B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9325109	3R_9325109_SNP [dm3] 3R_13499387_SNP [dm6]	C	A	3.819e^-5	0.628	INTERGENIC
3L	16019892	3L_16019892_SNP [dm3] 3L_16026792_SNP [dm6]	G	A	3.870e^-5	0.631	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10846263	2L_10846263_SNP [dm3] 2L_10846263_SNP [dm6]	C	T	4.004e^-5	0.647	UPSTREAM CG17139 & 1 other DOWNSTREAM porin INTRON Porin2
3R	11768158	3R_11768158_SNP [dm3] 3R_15942436_SNP [dm6]	G	T	4.088e^-5	0.655	INTRON Sap47
3R	26238253	3R_26238253_SNP [dm3] 3R_30412531_SNP [dm6]	G	T	4.133e^-5	0.657	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12298375	3L_12298375_SNP [dm3] 3L_12305275_SNP [dm6]	A	G	4.226e^-5	0.661	INTERGENIC
3L	17607665	3L_17607665_SNP [dm3] 3L_17614565_SNP [dm6]	C	A	4.232e^-5	0.661	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24486343	3R_24486343_SNP [dm3] 3R_28660621_SNP [dm6]	G	T	4.311e^-5	0.661	INTERGENIC
3R	8769667	3R_8769667_SNP [dm3] 3R_12943945_SNP [dm6]	G	A	4.341e^-5	0.661	INTERGENIC
3R	18679544	3R_18679544_SNP [dm3] 3R_22853822_SNP [dm6]	G	A	4.516e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
X	5326859	X_5326859_SNP [dm3] X_5432826_SNP [dm6]	C	A	4.596e^-5	0.661	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	19919436	3R_19919436_SNP [dm3] 3R_24093714_SNP [dm6]	C	T	4.714e^-5	0.661	INTRON 4EHP
3L	3846398	3L_3846398_SNP [dm3] 3L_3846398_SNP [dm6]	C	G	4.792e^-5	0.661	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10503120	3L_10503120_SNP [dm3] 3L_10510020_SNP [dm6]	A	G	4.795e^-5	0.661	INTRON A2bp1
3R	19919317	3R_19919317_SNP [dm3] 3R_24093595_SNP [dm6]	A	T	4.847e^-5	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12718687	3R_12718687_SNP [dm3] 3R_16892965_SNP [dm6]	C	G	4.901e^-5	0.661	UPSTREAM iab-8 INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17172271	3R_17172271_SNP [dm3] 3R_21346549_SNP [dm6]	G	T	4.908e^-5	0.661	INTRON CG16791	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19919301	3R_19919301_SNP [dm3] 3R_24093579_SNP [dm6]	T	G	4.938e^-5	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12312615	X_12312615_SNP [dm3] X_12418582_SNP [dm6]	T	A	5.019e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9181478	2R_9181478_SNP [dm3] 2R_13293973_SNP [dm6]	G	A	5.022e^-5	0.661	INTRON Dh31-R
X	12264379	X_12264379_SNP [dm3] X_12370346_SNP [dm6]	A	T	5.062e^-5	0.661	INTERGENIC
3R	11171980	3R_11171980_DEL [dm3] 3R_15346258_DEL [dm6]	GCT	G	5.099e^-5	0.661	UTR_5_PRIME CG31301 UPSTREAM Surf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19919370	3R_19919370_SNP [dm3] 3R_24093648_SNP [dm6]	C	T	5.200e^-5	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA
2R	8966981	2R_8966981_SNP [dm3] 2R_13079476_SNP [dm6]	T	C	5.269e^-5	0.661	UTR_5_PRIME Drl-2
X	13609972	X_13609972_SNP [dm3] X_13715939_SNP [dm6]	T	C	5.283e^-5	0.661	SYNONYMOUS_CODING NnaD INTRON CG9940	TF binding site mE1_TFBS_chinmo
3L	16550996	3L_16550996_SNP [dm3] 3L_16557896_SNP [dm6]	T	A	5.309e^-5	0.661	UTR_3_PRIME CG4229	TF binding site mE1_TFBS_cad
3R	7088155	3R_7088155_SNP [dm3] 3R_11262433_SNP [dm6]	C	T	5.329e^-5	0.661	INTERGENIC
3L	4317183	3L_4317183_SNP [dm3] 3L_4317183_SNP [dm6]	C	T	5.337e^-5	0.661	SYNONYMOUS_CODING Claspin
X	9017621	X_9017621_DEL [dm3] X_9123588_DEL [dm6]	AGT	A	5.348e^-5	0.661	UTR_3_PRIME fend
3L	4317053	3L_4317053_SNP [dm3] 3L_4317053_SNP [dm6]	T	A	5.417e^-5	0.661	NON_SYNONYMOUS_CODING Claspin
2R	7728131	2R_7728131_INS [dm3] 2R_11840626_INS [dm6]	T	TG	5.446e^-5	0.661	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13353779	3L_13353779_SNP [dm3] 3L_13360679_SNP [dm6]	A	C	5.469e^-5	0.661	INTERGENIC
2R	14098751	2R_14098751_INS [dm3] 2R_18211246_INS [dm6]	G	GG	5.475e^-5	0.661	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3673830	3L_3673830_SNP [dm3] 3L_3673830_SNP [dm6]	G	A	5.511e^-5	0.661	INTERGENIC
3L	5249516	3L_5249516_SNP [dm3] 3L_5256416_SNP [dm6]	C	T	5.516e^-5	0.661	INTRON shep
2R	3812727	2R_3812727_SNP [dm3] 2R_7925222_SNP [dm6]	A	G	5.599e^-5	0.661	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	16892363	X_16892363_SNP [dm3] X_16998330_SNP [dm6]	A	G	5.649e^-5	0.661	INTRON CG45002
2R	19670667	2R_19670667_SNP [dm3] 2R_23783144_SNP [dm6]	G	T	5.650e^-5	0.661	INTRON CG9850
3L	13353632	3L_13353632_SNP [dm3] 3L_13360532_SNP [dm6]	C	T	5.664e^-5	0.661	INTERGENIC
2L	12802184	2L_12802184_SNP [dm3] 2L_12802184_SNP [dm6]	A	G	5.667e^-5	0.661	INTERGENIC
2L	11066072	2L_11066072_SNP [dm3] 2L_11066072_SNP [dm6]	T	C	5.673e^-5	0.661	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11353524	X_11353524_SNP [dm3] X_11459491_SNP [dm6]	C	T	5.701e^-5	0.661	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	5.729e^-5	0.661	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	6708378	3L_6708378_SNP [dm3] 3L_6715278_SNP [dm6]	G	A	5.795e^-5	0.661	SYNONYMOUS_CODING ple	TF binding site mE1_TFBS_chinmo
2L	21749464	2L_21749464_SNP [dm3] 2L_21749464_SNP [dm6]	G	T	5.862e^-5	0.661	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4911563	2L_4911563_SNP [dm3] 2L_4911563_SNP [dm6]	A	T	5.866e^-5	0.661	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17026609	3L_17026609_SNP [dm3] 3L_17033509_SNP [dm6]	T	C	5.913e^-5	0.661	UPSTREAM CR45756 EXON CR43250	TF binding site BDTNP1_TFBS_dl
2R	17432382	2R_17432382_DEL [dm3] 2R_21544877_DEL [dm6]	GTTCTAAG	G	5.939e^-5	0.661	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15862652	3L_15862652_SNP [dm3] 3L_15869552_SNP [dm6]	G	A	5.966e^-5	0.661	INTRON pHCl
3L	5077990	3L_5077990_DEL [dm3] 3L_5077990_DEL [dm6]	TGACATACAGGTACTACAAA...	T	6.024e^-5	0.661	INTRON Con
3L	13901883	3L_13901883_SNP [dm3] 3L_13908783_SNP [dm6]	A	G	6.038e^-5	0.661	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_sens
2L	22063176	2L_22063176_INS [dm3] 2L_22063176_INS [dm6]	T	TA	6.066e^-5	0.661	INTERGENIC
3L	5249071	3L_5249071_SNP [dm3] 3L_5255971_SNP [dm6]	G	A	6.080e^-5	0.661	INTRON shep
3L	13353771	3L_13353771_SNP [dm3] 3L_13360671_SNP [dm6]	T	C	6.106e^-5	0.661	INTERGENIC
3R	19919306	3R_19919306_SNP [dm3] 3R_24093584_SNP [dm6]	G	C	6.121e^-5	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9325289	3R_9325289_SNP [dm3] 3R_13499567_SNP [dm6]	A	T	6.140e^-5	0.661	INTERGENIC
3R	26667719	3R_26667719_SNP [dm3] 3R_30841997_SNP [dm6]	G	A	6.172e^-5	0.661	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3L	1075714	3L_1075714_SNP [dm3] 3L_1075714_SNP [dm6]	C	A	6.219e^-5	0.661	INTRON bab1
3R	9552321	3R_9552321_SNP [dm3] 3R_13726599_SNP [dm6]	T	C	6.251e^-5	0.661	INTRON CG34383
2L	8273643	2L_8273643_SNP [dm3] 2L_8273643_SNP [dm6]	A	G	6.358e^-5	0.661	UTR_5_PRIME Btk29A INTRON Btk29A
2R	10605263	2R_10605263_SNP [dm3] 2R_14717758_SNP [dm6]	T	A	6.386e^-5	0.661	INTERGENIC
3L	12310471	3L_12310471_SNP [dm3] 3L_12317371_SNP [dm6]	A	C	6.467e^-5	0.661	INTERGENIC
2R	6337745	2R_6337745_SNP [dm3] 2R_10450240_SNP [dm6]	T	G	6.553e^-5	0.661	INTRON Galphao & 1 other
3R	14865761	3R_14865761_SNP [dm3] 3R_19040039_SNP [dm6]	T	C	6.558e^-5	0.661	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad
2L	2936372	2L_2936372_SNP [dm3] 2L_2936372_SNP [dm6]	T	G	6.565e^-5	0.661	INTRON lilli
2L	9017471	2L_9017471_SNP [dm3] 2L_9017471_SNP [dm6]	G	A	6.592e^-5	0.661	INTERGENIC
3L	15284195	3L_15284195_SNP [dm3] 3L_15291095_SNP [dm6]	A	G	6.613e^-5	0.661	INTERGENIC
2R	7277048	2R_7277048_SNP [dm3] 2R_11389543_SNP [dm6]	C	T	6.613e^-5	0.661	UPSTREAM CG30022 INTRON sprt
3L	13353762	3L_13353762_SNP [dm3] 3L_13360662_SNP [dm6]	A	T	6.628e^-5	0.661	INTERGENIC
3R	25344157	3R_25344157_SNP [dm3] 3R_29518435_SNP [dm6]	T	C	6.655e^-5	0.661	INTERGENIC
X	18964544	X_18964544_SNP [dm3] X_19070511_SNP [dm6]	A	G	6.714e^-5	0.661	INTERGENIC
3L	12267242	3L_12267242_SNP [dm3] 3L_12274142_SNP [dm6]	G	A	6.753e^-5	0.661	INTRON CG4300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18636355	3R_18636355_SNP [dm3] 3R_22810633_SNP [dm6]	T	G	6.761e^-5	0.661	INTERGENIC
3L	4364365	3L_4364365_SNP [dm3] 3L_4364365_SNP [dm6]	G	T	6.780e^-5	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1343605	2R_1343605_SNP [dm3] 2R_5456100_SNP [dm6]	A	C	6.798e^-5	0.661	DOWNSTREAM laccase2 INTERGENIC
3R	19919378	3R_19919378_SNP [dm3] 3R_24093656_SNP [dm6]	C	A	6.799e^-5	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3R	19233214	3R_19233214_INS [dm3] 3R_23407492_INS [dm6]	T	TT	6.801e^-5	0.661	DOWNSTREAM Ir94e INTERGENIC
3L	10503036	3L_10503036_SNP [dm3] 3L_10509936_SNP [dm6]	T	A	6.803e^-5	0.661	INTRON A2bp1
3R	5144251	3R_5144251_SNP [dm3] 3R_9318529_SNP [dm6]	G	A	6.928e^-5	0.661	INTRON CG8861
3L	15284118	3L_15284118_SNP [dm3] 3L_15291018_SNP [dm6]	A	T	6.983e^-5	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4207422	2L_4207422_SNP [dm3] 2L_4207422_SNP [dm6]	A	G	7.028e^-5	0.661	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19919314	3R_19919314_SNP [dm3] 3R_24093592_SNP [dm6]	T	A	7.160e^-5	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22654931	3R_22654931_SNP [dm3] 3R_26829209_SNP [dm6]	A	G	7.223e^-5	0.661	INTRON Tl
2L	12802174	2L_12802174_SNP [dm3] 2L_12802174_SNP [dm6]	T	G	7.235e^-5	0.661	INTERGENIC
2R	1746835	2R_1746835_SNP [dm3] 2R_5859330_SNP [dm6]	G	A	7.249e^-5	0.661	UTR_3_PRIME dpr12
3L	4364368	3L_4364368_SNP [dm3] 3L_4364368_SNP [dm6]	G	A	7.255e^-5	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7276983	2R_7276983_SNP [dm3] 2R_11389478_SNP [dm6]	T	C	7.261e^-5	0.661	UPSTREAM CG30022 INTRON sprt
2L	3876969	2L_3876969_SNP [dm3] 2L_3876969_SNP [dm6]	C	A	7.287e^-5	0.661	INTRON capu
2L	2183519	2L_2183519_SNP [dm3] 2L_2183519_SNP [dm6]	A	C	7.313e^-5	0.661	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18964592	X_18964592_SNP [dm3] X_19070559_SNP [dm6]	T	C	7.371e^-5	0.661	INTERGENIC
X	11003733	X_11003733_SNP [dm3] X_11109700_SNP [dm6]	T	C	7.388e^-5	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_sna
2L	22063201	2L_22063201_SNP [dm3] 2L_22063201_SNP [dm6]	A	G	7.405e^-5	0.661	INTERGENIC
3L	18418281	3L_18418281_SNP [dm3] 3L_18425181_SNP [dm6]	A	T	7.438e^-5	0.661	INTERGENIC
2L	9399253	2L_9399253_SNP [dm3] 2L_9399253_SNP [dm6]	A	G	7.489e^-5	0.661	INTRON Shawl
3R	18531080	3R_18531080_SNP [dm3] 3R_22705358_SNP [dm6]	C	A	7.501e^-5	0.661	INTRON CG13842
2L	16447926	2L_16447926_SNP [dm3] 2L_16447926_SNP [dm6]	G	A	7.578e^-5	0.661	INTRON CG5888 & 1 other	TF binding site mE1_TFBS_Trl
X	8478454	X_8478454_SNP [dm3] X_8584421_SNP [dm6]	G	A	7.579e^-5	0.661	INTRON CG12065
2L	11624986	2L_11624986_INS [dm3] 2L_11624986_INS [dm6]	T	TAATCAAT	7.608e^-5	0.661	UTR_3_PRIME kek2
3L	10556633	3L_10556633_SNP [dm3] 3L_10563533_SNP [dm6]	A	T	7.610e^-5	0.661	INTRON A2bp1
X	6495993	X_6495993_SNP [dm3] X_6601960_SNP [dm6]	T	A	7.635e^-5	0.661	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9884037	2R_9884037_SNP [dm3] 2R_13996532_SNP [dm6]	A	G	7.644e^-5	0.661	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12310459	3L_12310459_SNP [dm3] 3L_12317359_SNP [dm6]	G	A	7.717e^-5	0.661	INTERGENIC
X	20718564	X_20718564_DEL [dm3] X_20847537_DEL [dm6]	CATTTTTCC	C	7.725e^-5	0.661	INTRON shakB
3L	983638	3L_983638_SNP [dm3] 3L_983638_SNP [dm6]	A	T	7.813e^-5	0.661	INTRON Glut1
X	18964625	X_18964625_SNP [dm3] X_19070592_SNP [dm6]	A	T	7.906e^-5	0.661	INTERGENIC
2L	9015398	2L_9015398_SNP [dm3] 2L_9015398_SNP [dm6]	A	T	7.933e^-5	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14965930	2L_14965930_SNP [dm3] 2L_14965930_SNP [dm6]	G	A	7.950e^-5	0.661	INTRON CG42313
3L	970690	3L_970690_SNP [dm3] 3L_970690_SNP [dm6]	G	A	7.953e^-5	0.661	INTRON Glut1
3R	9325548	3R_9325548_SNP [dm3] 3R_13499826_SNP [dm6]	G	A	8.011e^-5	0.661	INTERGENIC
2R	17866509	2R_17866509_SNP [dm3] 2R_21979004_SNP [dm6]	C	T	8.019e^-5	0.661	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
3L	4318147	3L_4318147_SNP [dm3] 3L_4318147_SNP [dm6]	G	T	8.022e^-5	0.661	NON_SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
3L	13353648	3L_13353648_SNP [dm3] 3L_13360548_SNP [dm6]	A	T	8.046e^-5	0.661	INTERGENIC
2L	8335378	2L_8335378_SNP [dm3] 2L_8335378_SNP [dm6]	A	T	8.063e^-5	0.661	INTERGENIC
3L	5994299	3L_5994299_SNP [dm3] 3L_6001199_SNP [dm6]	A	G	8.118e^-5	0.661	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4140740	2L_4140740_SNP [dm3] 2L_4140740_SNP [dm6]	C	T	8.129e^-5	0.661	INTERGENIC
2R	13614934	2R_13614934_SNP [dm3] 2R_17727429_SNP [dm6]	A	G	8.189e^-5	0.661	SYNONYMOUS_CODING CG4975 UTR_5_PRIME CG4984 UPSTREAM Snx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	748023	3L_748023_SNP [dm3] 3L_748023_SNP [dm6]	T	C	8.222e^-5	0.661	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10491380	2L_10491380_SNP [dm3] 2L_10491380_SNP [dm6]	G	A	8.234e^-5	0.661	UTR_5_PRIME CG13144 DOWNSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9445035	2R_9445035_SNP [dm3] 2R_13557530_SNP [dm6]	A	C	8.248e^-5	0.661	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7856728	3L_7856728_SNP [dm3] 3L_7863628_SNP [dm6]	C	T	8.290e^-5	0.661	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13484720	2R_13484720_SNP [dm3] 2R_17597215_SNP [dm6]	A	C	8.396e^-5	0.661	SYNONYMOUS_CODING CG11423 INTRON lack
2R	13932250	2R_13932250_SNP [dm3] 2R_18044745_SNP [dm6]	A	G	8.508e^-5	0.661	SYNONYMOUS_CODING CG5770
3L	983380	3L_983380_SNP [dm3] 3L_983380_SNP [dm6]	C	A	8.539e^-5	0.661	DOWNSTREAM Glut1 INTRON Glut1
3R	10577560	3R_10577560_SNP [dm3] 3R_14751838_SNP [dm6]	T	C	8.708e^-5	0.661	UTR_3_PRIME CG7362 UPSTREAM smp-30 INTRON jvl
3L	4638360	3L_4638360_SNP [dm3] 3L_4638360_SNP [dm6]	G	C	8.746e^-5	0.661	INTRON axo
2R	17866493	2R_17866493_SNP [dm3] 2R_21978988_SNP [dm6]	G	A	8.824e^-5	0.661	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
3L	4364459	3L_4364459_SNP [dm3] 3L_4364459_SNP [dm6]	A	T	8.832e^-5	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7856142	3L_7856142_SNP [dm3] 3L_7863042_SNP [dm6]	T	A	8.838e^-5	0.661	INTRON Pdp1
2R	1342074	2R_1342074_SNP [dm3] 2R_5454569_SNP [dm6]	T	C	8.846e^-5	0.661	SYNONYMOUS_CODING laccase2 DOWNSTREAM laccase2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26526348	3R_26526348_SNP [dm3] 3R_30700626_SNP [dm6]	C	T	8.866e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12296927	2L_12296927_SNP [dm3] 2L_12296927_SNP [dm6]	A	G	8.902e^-5	0.661	INTRON aret
2L	4855694	2L_4855694_SNP [dm3] 2L_4855694_SNP [dm6]	G	T	8.980e^-5	0.661	INTRON pog
3R	26492591	3R_26492591_SNP [dm3] 3R_30666869_SNP [dm6]	G	T	9.034e^-5	0.661	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12310460	3L_12310460_SNP [dm3] 3L_12317360_SNP [dm6]	A	G	9.035e^-5	0.661	INTERGENIC
3L	3904204	3L_3904204_SNP [dm3] 3L_3904204_SNP [dm6]	C	A	9.036e^-5	0.661	SYNONYMOUS_CODING Sc2	TF binding site mE1_TFBS_sens
X	11003705	X_11003705_DEL [dm3] X_11109672_DEL [dm6]	TT	T	9.068e^-5	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_sna
3L	18063560	3L_18063560_SNP [dm3] 3L_18070460_SNP [dm6]	T	G	9.093e^-5	0.661	UTR_3_PRIME CG44005 UPSTREAM CG44006
2R	14839634	2R_14839634_SNP [dm3] 2R_18952129_SNP [dm6]	G	A	9.212e^-5	0.661	INTRON sano
3L	12310447	3L_12310447_DEL [dm3] 3L_12317347_DEL [dm6]	ATCGATAAAA	A	9.307e^-5	0.661	INTERGENIC
3R	14866193	3R_14866193_SNP [dm3] 3R_19040471_SNP [dm6]	C	T	9.380e^-5	0.661	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6645771	3R_6645771_SNP [dm3] 3R_10820049_SNP [dm6]	A	G	9.444e^-5	0.661	INTERGENIC
3R	10577523	3R_10577523_SNP [dm3] 3R_14751801_SNP [dm6]	G	A	9.492e^-5	0.661	UTR_3_PRIME CG7362 UPSTREAM smp-30 INTRON jvl
2R	10580084	2R_10580084_SNP [dm3] 2R_14692579_SNP [dm6]	C	T	9.521e^-5	0.661	INTRON mspo
3R	13127354	3R_13127354_SNP [dm3] 3R_17301632_SNP [dm6]	T	C	9.560e^-5	0.661	INTERGENIC
2R	10715614	2R_10715614_SNP [dm3] 2R_14828109_SNP [dm6]	C	T	9.581e^-5	0.661	INTERGENIC
3L	5250461	3L_5250461_DEL [dm3] 3L_5257361_DEL [dm6]	TA	T	9.600e^-5	0.661	INTRON shep
3R	9177872	3R_9177872_SNP [dm3] 3R_13352150_SNP [dm6]	A	G	9.642e^-5	0.661	INTERGENIC
3L	1623903	3L_1623903_SNP [dm3] 3L_1623903_SNP [dm6]	T	A	9.715e^-5	0.661	SYNONYMOUS_CODING GC DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6589450	3R_6589450_SNP [dm3] 3R_10763728_SNP [dm6]	G	C	9.719e^-5	0.661	NON_SYNONYMOUS_CODING Cap-H2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18941907	2R_18941907_SNP [dm3] 2R_23054384_SNP [dm6]	T	A	9.721e^-5	0.661	INTERGENIC
3R	9361833	3R_9361833_SNP [dm3] 3R_13536111_SNP [dm6]	A	C	9.725e^-5	0.661	INTERGENIC
3L	7887270	3L_7887270_SNP [dm3] 3L_7894170_SNP [dm6]	T	A	9.788e^-5	0.661	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14112786	2R_14112786_SNP [dm3] 2R_18225281_SNP [dm6]	C	T	9.794e^-5	0.661	INTERGENIC
2L	1541202	2L_1541202_SNP [dm3] 2L_1541202_SNP [dm6]	C	G	9.812e^-5	0.661	INTERGENIC
3R	9388193	3R_9388193_DEL [dm3] 3R_13562471_DEL [dm6]	CGTTAA	C	9.813e^-5	0.661	INTERGENIC
3R	19919321	3R_19919321_SNP [dm3] 3R_24093599_SNP [dm6]	T	G	9.839e^-5	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13127367	3R_13127367_SNP [dm3] 3R_17301645_SNP [dm6]	G	A	9.855e^-5	0.661	INTERGENIC
2R	6923608	2R_6923608_SNP [dm3] 2R_11036103_SNP [dm6]	G	A	9.867e^-5	0.661	INTRON luna
2R	7583315	2R_7583315_SNP [dm3] 2R_11695810_SNP [dm6]	G	T	9.891e^-5	0.661	UTR_3_PRIME CG13197 DOWNSTREAM CG13197
3L	4316626	3L_4316626_SNP [dm3] 3L_4316626_SNP [dm6]	A	G	9.930e^-5	0.661	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3812910	2R_3812910_SNP [dm3] 2R_7925405_SNP [dm6]	A	T	9.932e^-5	0.661	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	9396708	2L_9396708_SNP [dm3] 2L_9396708_SNP [dm6]	C	T	9.980e^-5	0.661	DOWNSTREAM CG4438 INTRON Shawl
X	12111468	X_12111468_SNP [dm3] X_12217435_SNP [dm6]	C	G	1.000e^-4	0.661	INTRON Ten-a	TF binding site mE1_TFBS_cad
3L	17917420	3L_17917420_SNP [dm3] 3L_17924320_SNP [dm6]	C	T	1.001e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17906961	2L_17906961_SNP [dm3] 2L_17906961_SNP [dm6]	C	T	1.005e^-4	0.661	INTERGENIC
3R	7876398	3R_7876398_SNP [dm3] 3R_12050676_SNP [dm6]	G	A	1.011e^-4	0.661	INTERGENIC
3L	7856701	3L_7856701_SNP [dm3] 3L_7863601_SNP [dm6]	G	T	1.011e^-4	0.661	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6803053	3L_6803053_INS [dm3] 3L_6809953_INS [dm6]	G	GACTGACTGCCTG...	1.016e^-4	0.661	INTERGENIC
3R	17247039	3R_17247039_INS [dm3] 3R_21421317_INS [dm6]	T	TATT	1.017e^-4	0.661	INTRON lbl	TF binding site mE1_TFBS_cad
3R	7882050	3R_7882050_SNP [dm3] 3R_12056328_SNP [dm6]	C	A	1.021e^-4	0.661	INTERGENIC
2L	9399117	2L_9399117_SNP [dm3] 2L_9399117_SNP [dm6]	C	T	1.025e^-4	0.661	INTRON Shawl
2R	6544185	2R_6544185_SNP [dm3] 2R_10656680_SNP [dm6]	A	T	1.027e^-4	0.661	DOWNSTREAM CR44452 INTERGENIC
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	1.032e^-4	0.661	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	797296	3L_797296_SNP [dm3] 3L_797296_SNP [dm6]	C	A	1.032e^-4	0.661	INTERGENIC
X	11003759	X_11003759_SNP [dm3] X_11109726_SNP [dm6]	C	T	1.037e^-4	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_sna
3R	23984245	3R_23984245_SNP [dm3] 3R_28158523_SNP [dm6]	T	A	1.038e^-4	0.661	INTRON CG34354
3R	9179522	3R_9179522_SNP [dm3] 3R_13353800_SNP [dm6]	A	G	1.049e^-4	0.661	NON_SYNONYMOUS_CODING mthl12
2R	10226955	2R_10226955_DEL [dm3] 2R_14339450_DEL [dm6]	CC	C	1.069e^-4	0.661	INTRON Shroom
X	18964646	X_18964646_SNP [dm3] X_19070613_SNP [dm6]	T	A	1.087e^-4	0.661	INTERGENIC
2R	3263958	2R_3263958_SNP [dm3] 2R_7376453_SNP [dm6]	A	T	1.099e^-4	0.661	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3R	25157496	3R_25157496_SNP [dm3] 3R_29331774_SNP [dm6]	G	T	1.102e^-4	0.661	INTERGENIC
2R	1305234	2R_1305234_SNP [dm3] 2R_5417729_SNP [dm6]	G	A	1.113e^-4	0.661	INTRON laccase2	TF binding site BDTNP1_TFBS_dl
X	768297	X_768297_SNP [dm3] X_874264_SNP [dm6]	G	A	1.115e^-4	0.661	INTRON CG43867	TF binding site mE1_TFBS_chinmo
3R	24196688	3R_24196688_SNP [dm3] 3R_28370966_SNP [dm6]	G	T	1.116e^-4	0.661	INTERGENIC
2L	9236058	2L_9236058_SNP [dm3] 2L_9236058_SNP [dm6]	G	T	1.123e^-4	0.661	DOWNSTREAM tRNA:CR31885 INTRON tai
3R	12718965	3R_12718965_SNP [dm3] 3R_16893243_SNP [dm6]	T	G	1.125e^-4	0.661	INTRON iab-8 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	1252078	2R_1252078_SNP [dm3] 2R_5364573_SNP [dm6]	C	A	1.138e^-4	0.661	EXON CR42646
2R	17389244	2R_17389244_SNP [dm3] 2R_21501739_SNP [dm6]	A	T	1.138e^-4	0.661	UPSTREAM MESK2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18550972	3R_18550972_SNP [dm3] 3R_22725250_SNP [dm6]	C	G	1.144e^-4	0.661	SYNONYMOUS_CODING CG4813 UPSTREAM Irp-1A DOWNSTREAM CR45648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9215028	2R_9215028_SNP [dm3] 2R_13327523_SNP [dm6]	A	G	1.154e^-4	0.661	INTERGENIC
2R	13614742	2R_13614742_SNP [dm3] 2R_17727237_SNP [dm6]	A	G	1.158e^-4	0.661	SYNONYMOUS_CODING CG4975 START_GAINED CG4984 UTR_5_PRIME CG4984 UPSTREAM Snx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	5247572	3L_5247572_SNP [dm3] 3L_5254472_SNP [dm6]	G	A	1.160e^-4	0.661	INTRON shep
3R	25130788	3R_25130788_SNP [dm3] 3R_29305066_SNP [dm6]	T	C	1.168e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26695520	3R_26695520_SNP [dm3] 3R_30869798_SNP [dm6]	T	A	1.177e^-4	0.661	DOWNSTREAM Cpr100A INTERGENIC
3R	19919379	3R_19919379_SNP [dm3] 3R_24093657_SNP [dm6]	A	T	1.185e^-4	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA
2R	14898280	2R_14898280_SNP [dm3] 2R_19010775_SNP [dm6]	C	T	1.186e^-4	0.661	INTERGENIC
X	11240349	X_11240349_SNP [dm3] X_11346316_SNP [dm6]	A	G	1.186e^-4	0.661	SYNONYMOUS_CODING CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20608213	3R_20608213_SNP [dm3] 3R_24782491_SNP [dm6]	T	G	1.186e^-4	0.661	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2R	9763734	2R_9763734_SNP [dm3] 2R_13876229_SNP [dm6]	A	G	1.192e^-4	0.661	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6289253	2L_6289253_SNP [dm3] 2L_6289253_SNP [dm6]	G	T	1.194e^-4	0.661	INTRON Ddr
3R	9313366	3R_9313366_SNP [dm3] 3R_13487644_SNP [dm6]	G	A	1.195e^-4	0.661	INTERGENIC
3R	13850397	3R_13850397_SNP [dm3] 3R_18024675_SNP [dm6]	A	T	1.198e^-4	0.661	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
2L	8197001	2L_8197001_INS [dm3] 2L_8197001_INS [dm6]	A	AT	1.200e^-4	0.661	UPSTREAM CG8460 & 1 other EXON CR44116
X	20458901	X_20458901_SNP [dm3] X_20587874_SNP [dm6]	C	T	1.202e^-4	0.661	INTERGENIC
3R	16312668	3R_16312668_SNP [dm3] 3R_20486946_SNP [dm6]	G	T	1.203e^-4	0.661	UPSTREAM CR44401 INTERGENIC
3R	7882490	3R_7882490_SNP [dm3] 3R_12056768_SNP [dm6]	C	T	1.213e^-4	0.661	INTERGENIC
2L	8335193	2L_8335193_SNP [dm3] 2L_8335193_SNP [dm6]	C	G	1.218e^-4	0.661	INTERGENIC
3R	12554517	3R_12554517_SNP [dm3] 3R_16728795_SNP [dm6]	C	T	1.220e^-4	0.661	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3R	26695534	3R_26695534_SNP [dm3] 3R_30869812_SNP [dm6]	C	T	1.220e^-4	0.661	DOWNSTREAM Cpr100A INTERGENIC
3L	10632868	3L_10632868_SNP [dm3] 3L_10639768_SNP [dm6]	C	T	1.220e^-4	0.661	UTR_5_PRIME CG18628 DOWNSTREAM CG32066 & 1 other
3L	4364457	3L_4364457_SNP [dm3] 3L_4364457_SNP [dm6]	A	T	1.222e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7687329	3R_7687329_SNP [dm3] 3R_11861607_SNP [dm6]	A	G	1.223e^-4	0.661	INTRON CG6959
2L	10491763	2L_10491763_SNP [dm3] 2L_10491763_SNP [dm6]	T	C	1.224e^-4	0.661	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
X	18063480	X_18063480_SNP [dm3] X_18169447_SNP [dm6]	T	C	1.230e^-4	0.661	INTRON Frq1
2R	2706614	2R_2706614_SNP [dm3] 2R_6819109_SNP [dm6]	G	T	1.230e^-4	0.661	DOWNSTREAM koi INTERGENIC
X	2487827	X_2487827_SNP [dm3] X_2593794_SNP [dm6]	C	G	1.234e^-4	0.661	UTR_5_PRIME egh INTRON egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3876905	2L_3876905_SNP [dm3] 2L_3876905_SNP [dm6]	T	C	1.235e^-4	0.661	INTRON capu
2R	6534638	2R_6534638_SNP [dm3] 2R_10647133_SNP [dm6]	T	C	1.237e^-4	0.661	SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
3R	9990697	3R_9990697_SNP [dm3] 3R_14164975_SNP [dm6]	C	A	1.246e^-4	0.661	DOWNSTREAM Dop1R1 INTERGENIC
3L	5955717	3L_5955717_SNP [dm3] 3L_5962617_SNP [dm6]	G	T	1.253e^-4	0.661	INTERGENIC
2L	16447941	2L_16447941_SNP [dm3] 2L_16447941_SNP [dm6]	G	A	1.254e^-4	0.661	INTRON CG5888 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18961249	3L_18961249_SNP [dm3] 3L_18968149_SNP [dm6]	G	T	1.258e^-4	0.661	INTERGENIC
2R	6545468	2R_6545468_SNP [dm3] 2R_10657963_SNP [dm6]	A	C	1.259e^-4	0.661	UPSTREAM CR44452 INTERGENIC
X	20459064	X_20459064_SNP [dm3] X_20588037_SNP [dm6]	C	T	1.263e^-4	0.661	INTERGENIC
3L	16731323	3L_16731323_SNP [dm3] 3L_16738223_SNP [dm6]	A	G	1.263e^-4	0.661	INTRON CG9701	TF binding site mE1_TFBS_cad
2L	12802180	2L_12802180_SNP [dm3] 2L_12802180_SNP [dm6]	A	T	1.269e^-4	0.661	INTERGENIC
3R	26525082	3R_26525082_SNP [dm3] 3R_30699360_SNP [dm6]	G	A	1.273e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1434238	2L_1434238_SNP [dm3] 2L_1434238_SNP [dm6]	T	A	1.280e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	1.281e^-4	0.661	INTRON aret
2L	15440760	2L_15440760_SNP [dm3] 2L_15440760_SNP [dm6]	A	C	1.283e^-4	0.661	UPSTREAM CR44862 INTERGENIC
X	14379696	X_14379696_SNP [dm3] X_14485663_SNP [dm6]	C	T	1.287e^-4	0.661	INTERGENIC
3R	9293570	3R_9293570_SNP [dm3] 3R_13467848_SNP [dm6]	T	A	1.298e^-4	0.661	INTERGENIC
X	13795292	X_13795292_SNP [dm3] X_13901259_SNP [dm6]	A	G	1.309e^-4	0.661	INTRON mamo
3L	3904147	3L_3904147_SNP [dm3] 3L_3904147_SNP [dm6]	C	T	1.310e^-4	0.661	SYNONYMOUS_CODING Sc2 UPSTREAM Ubi-p63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5525371	3L_5525371_SNP [dm3] 3L_5532271_SNP [dm6]	C	A	1.313e^-4	0.661	INTERGENIC
2L	8335482	2L_8335482_SNP [dm3] 2L_8335482_SNP [dm6]	C	T	1.318e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6358238	2L_6358238_SNP [dm3] 2L_6358238_SNP [dm6]	C	T	1.324e^-4	0.661	UTR_5_PRIME CG9500 DOWNSTREAM CR44777
3L	16908527	3L_16908527_SNP [dm3] 3L_16915427_SNP [dm6]	G	T	1.325e^-4	0.661	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z
3L	18961248	3L_18961248_SNP [dm3] 3L_18968148_SNP [dm6]	G	T	1.329e^-4	0.661	INTERGENIC
2L	17906957	2L_17906957_SNP [dm3] 2L_17906957_SNP [dm6]	T	C	1.336e^-4	0.661	INTERGENIC
X	5925880	X_5925880_SNP [dm3] X_6031847_SNP [dm6]	G	A	1.343e^-4	0.661	INTERGENIC	silencer mE1_HDAC_PRE
3L	3904237	3L_3904237_SNP [dm3] 3L_3904237_SNP [dm6]	C	T	1.348e^-4	0.661	SYNONYMOUS_CODING Sc2	TF binding site mE1_TFBS_sens
3R	9226284	3R_9226284_SNP [dm3] 3R_13400562_SNP [dm6]	G	C	1.348e^-4	0.661	INTRON CG9796
3L	3661163	3L_3661163_SNP [dm3] 3L_3661163_SNP [dm6]	A	T	1.350e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10783106	3L_10783106_INS [dm3] 3L_10790006_INS [dm6]	A	ACAAATTCAATTAAAAAAA...	1.357e^-4	0.661	DOWNSTREAM CR44545 INTERGENIC
2R	10807770	2R_10807770_SNP [dm3] 2R_14920265_SNP [dm6]	C	A	1.363e^-4	0.661	INTRON CG10249	TF binding site mE1_TFBS_cnc
2R	19541903	2R_19541903_INS [dm3] 2R_23654380_INS [dm6]	T	TT	1.372e^-4	0.661	UTR_3_PRIME retn	TF binding site BDTNP1_TFBS_dl
3R	26525077	3R_26525077_SNP [dm3] 3R_30699355_SNP [dm6]	A	T	1.376e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	15245859	3R_15245859_SNP [dm3] 3R_19420137_SNP [dm6]	T	A	1.380e^-4	0.661	INTRON CG31221
2R	2775235	2R_2775235_SNP [dm3] 2R_6887730_SNP [dm6]	G	A	1.381e^-4	0.661	INTRON Spn42De
2R	19414261	2R_19414261_DEL [dm3] 2R_23526738_DEL [dm6]	TTA	T	1.384e^-4	0.661	INTRON mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19919430	3R_19919430_SNP [dm3] 3R_24093708_SNP [dm6]	C	T	1.389e^-4	0.661	INTRON 4EHP
2R	7947466	2R_7947466_SNP [dm3] 2R_12059961_SNP [dm6]	C	T	1.396e^-4	0.661	INTRON Drep-3
3L	16731319	3L_16731319_SNP [dm3] 3L_16738219_SNP [dm6]	G	T	1.396e^-4	0.661	INTRON CG9701	TF binding site mE1_TFBS_cad
X	11003183	X_11003183_INS [dm3] X_11109150_INS [dm6]	T	TCATTGT	1.399e^-4	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	2132705	2L_2132705_SNP [dm3] 2L_2132705_SNP [dm6]	A	G	1.400e^-4	0.661	INTRON GlyP
X	19995643	X_19995643_SNP [dm3] X_20101610_SNP [dm6]	A	G	1.403e^-4	0.661	INTERGENIC	transposable element FlyBase
3L	3904012	3L_3904012_SNP [dm3] 3L_3904012_SNP [dm6]	C	A	1.405e^-4	0.661	UPSTREAM Ubi-p63E INTRON Sc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17238173	3L_17238173_SNP [dm3] 3L_17245073_SNP [dm6]	T	C	1.408e^-4	0.661	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
3L	15686204	3L_15686204_SNP [dm3] 3L_15693104_SNP [dm6]	G	T	1.414e^-4	0.661	INTERGENIC	silencer mE1_HDAC_PRE
2R	6827617	2R_6827617_DEL [dm3] 2R_10940112_DEL [dm6]	TCA	T	1.415e^-4	0.661	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	18381969	3L_18381969_SNP [dm3] 3L_18388869_SNP [dm6]	A	G	1.421e^-4	0.661	INTERGENIC
3L	1527907	3L_1527907_SNP [dm3] 3L_1527907_SNP [dm6]	G	C	1.428e^-4	0.661	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4317055	3L_4317055_SNP [dm3] 3L_4317055_SNP [dm6]	C	A	1.431e^-4	0.661	NON_SYNONYMOUS_CODING Claspin
3L	17764931	3L_17764931_SNP [dm3] 3L_17771831_SNP [dm6]	A	G	1.433e^-4	0.661	INTERGENIC
2L	19917697	2L_19917697_SNP [dm3] 2L_19917697_SNP [dm6]	A	C	1.441e^-4	0.661	UPSTREAM sick INTRON sick	TF binding site mE1_TFBS_Trl
3R	26637079	3R_26637079_SNP [dm3] 3R_30811357_SNP [dm6]	G	C	1.442e^-4	0.661	INTRON cindr
3L	7736504	3L_7736504_SNP [dm3] 3L_7743404_SNP [dm6]	T	G	1.449e^-4	0.661	UPSTREAM Snmp2 INTRON CG32373
X	7489772	X_7489772_SNP [dm3] X_7595739_SNP [dm6]	T	A	1.456e^-4	0.661	INTERGENIC	regulatory region REDfly_CRMs
2R	17389268	2R_17389268_SNP [dm3] 2R_21501763_SNP [dm6]	C	G	1.458e^-4	0.661	UPSTREAM MESK2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	7876900	3R_7876900_SNP [dm3] 3R_12051178_SNP [dm6]	G	A	1.465e^-4	0.661	INTERGENIC
2L	4209246	2L_4209246_SNP [dm3] 2L_4209246_SNP [dm6]	C	T	1.466e^-4	0.661	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	8788448	3R_8788448_SNP [dm3] 3R_12962726_SNP [dm6]	G	A	1.472e^-4	0.661	SYNONYMOUS_CODING Spc25 INTRON grsm
3L	2398203	3L_2398203_SNP [dm3] 3L_2398203_SNP [dm6]	T	A	1.473e^-4	0.661	INTRON CG45186	TF binding site mE1_TFBS_inv
2R	18061884	2R_18061884_SNP [dm3] 2R_22174379_SNP [dm6]	T	C	1.477e^-4	0.661	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	9588578	3R_9588578_SNP [dm3] 3R_13762856_SNP [dm6]	G	A	1.491e^-4	0.661	UTR_3_PRIME CG34383 DOWNSTREAM CG34383
2R	7795913	2R_7795913_SNP [dm3] 2R_11908408_SNP [dm6]	T	A	1.492e^-4	0.661	INTRON CG13183
2L	14059489	2L_14059489_SNP [dm3] 2L_14059489_SNP [dm6]	C	A	1.501e^-4	0.661	INTRON nAChRalpha5
2L	21944400	2L_21944400_DEL [dm3] 2L_21944400_DEL [dm6]	GGTGTGCAAA	T	1.502e^-4	0.661	INTERGENIC
3R	6638475	3R_6638475_SNP [dm3] 3R_10812753_SNP [dm6]	T	A	1.503e^-4	0.661	DOWNSTREAM CG14693 INTRON CG14693
3L	13353661	3L_13353661_SNP [dm3] 3L_13360561_SNP [dm6]	G	A	1.512e^-4	0.661	INTERGENIC
2L	5590129	2L_5590129_DEL [dm3] 2L_5590129_DEL [dm6]	AA	A	1.525e^-4	0.661	INTERGENIC
2R	6450088	2R_6450088_INS [dm3] 2R_10562583_INS [dm6]	A	ATTA	1.532e^-4	0.661	INTRON psq	TF binding site BDTNP1_TFBS_twi
3L	18944798	3L_18944798_SNP [dm3] 3L_18951698_SNP [dm6]	G	A	1.533e^-4	0.661	INTRON CG6836
X	19491080	X_19491080_SNP [dm3] X_19597047_SNP [dm6]	A	T	1.533e^-4	0.661	UPSTREAM RpS10b INTERGENIC
X	18065437	X_18065437_SNP [dm3] X_18171404_SNP [dm6]	C	T	1.543e^-4	0.661	UTR_3_PRIME Frq1
3R	20608317	3R_20608317_SNP [dm3] 3R_24782595_SNP [dm6]	A	T	1.546e^-4	0.661	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
3L	4364469	3L_4364469_SNP [dm3] 3L_4364469_SNP [dm6]	G	T	1.550e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10078977	2L_10078977_SNP [dm3] 2L_10078977_SNP [dm6]	T	C	1.562e^-4	0.661	INTRON CG44153
2R	20173752	2R_20173752_SNP [dm3] 2R_24286229_SNP [dm6]	G	A	1.571e^-4	0.661	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	2775264	2R_2775264_SNP [dm3] 2R_6887759_SNP [dm6]	T	C	1.572e^-4	0.661	INTRON Spn42De
3R	19204353	3R_19204353_SNP [dm3] 3R_23378631_SNP [dm6]	C	T	1.579e^-4	0.661	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	18665146	X_18665146_SNP [dm3] X_18771113_SNP [dm6]	G	A	1.581e^-4	0.661	INTRON CCKLR-17D3
3L	10346036	3L_10346036_SNP [dm3] 3L_10352936_SNP [dm6]	A	C	1.584e^-4	0.661	INTRON CR44327
3L	17610836	3L_17610836_SNP [dm3] 3L_17617736_SNP [dm6]	A	T	1.585e^-4	0.661	INTRON Eip74EF
3L	4364482	3L_4364482_SNP [dm3] 3L_4364482_SNP [dm6]	A	T	1.591e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13850033	3R_13850033_SNP [dm3] 3R_18024311_SNP [dm6]	C	T	1.594e^-4	0.661	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
3L	12968294	3L_12968294_SNP [dm3] 3L_12975194_SNP [dm6]	A	G	1.595e^-4	0.661	INTERGENIC
2R	16719124	2R_16719124_DEL [dm3] 2R_20831619_DEL [dm6]	CCCTC	C	1.598e^-4	0.661	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	5659454	2L_5659454_SNP [dm3] 2L_5659454_SNP [dm6]	A	C	1.600e^-4	0.661	UPSTREAM CG31646 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	4317146	3L_4317146_SNP [dm3] 3L_4317146_SNP [dm6]	C	T	1.606e^-4	0.661	NON_SYNONYMOUS_CODING Claspin
2L	8060007	2L_8060007_SNP [dm3] 2L_8060007_SNP [dm6]	A	G	1.607e^-4	0.661	SYNONYMOUS_CODING poe
3L	7856664	3L_7856664_INS [dm3] 3L_7863564_INS [dm6]	T	TCT	1.611e^-4	0.661	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9998894	3R_9998894_SNP [dm3] 3R_14173172_SNP [dm6]	T	C	1.613e^-4	0.661	UTR_3_PRIME Dop1R1
3R	18099760	3R_18099760_SNP [dm3] 3R_22274038_SNP [dm6]	C	A	1.615e^-4	0.661	INTRON SKIP
3L	20921545	3L_20921545_SNP [dm3] 3L_20928445_SNP [dm6]	C	G	1.615e^-4	0.661	SYNONYMOUS_CODING CG10589 INTRON fng	TF binding site mE1_TFBS_sens
2L	9405364	2L_9405364_SNP [dm3] 2L_9405364_SNP [dm6]	G	A	1.615e^-4	0.661	INTRON Shawl
3R	19919269	3R_19919269_SNP [dm3] 3R_24093547_SNP [dm6]	T	C	1.618e^-4	0.661	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17327054	3R_17327054_SNP [dm3] 3R_21501332_SNP [dm6]	C	T	1.619e^-4	0.661	INTRON C15
2L	1541203	2L_1541203_SNP [dm3] 2L_1541203_SNP [dm6]	A	G	1.621e^-4	0.661	INTERGENIC
X	7969009	X_7969009_SNP [dm3] X_8074976_SNP [dm6]	T	C	1.626e^-4	0.661	SYNONYMOUS_CODING Upf2 UPSTREAM CG1571	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4364429	3L_4364429_SNP [dm3] 3L_4364429_SNP [dm6]	A	G	1.632e^-4	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9831596	2L_9831596_SNP [dm3] 2L_9831596_SNP [dm6]	C	T	1.633e^-4	0.661	INTRON nAChRalpha6
2L	9167723	2L_9167723_SNP [dm3] 2L_9167723_SNP [dm6]	G	A	1.642e^-4	0.661	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13059636	2R_13059636_SNP [dm3] 2R_17172131_SNP [dm6]	A	C	1.645e^-4	0.661	INTERGENIC
3L	17579947	3L_17579947_SNP [dm3] 3L_17586847_SNP [dm6]	T	G	1.645e^-4	0.661	INTRON Eip74EF
3R	20603950	3R_20603950_SNP [dm3] 3R_24778228_SNP [dm6]	T	C	1.647e^-4	0.661	INTRON CG42331
X	18319430	X_18319430_SNP [dm3] X_18425397_SNP [dm6]	C	T	1.647e^-4	0.661	INTRON CG42323
2R	15900721	2R_15900721_SNP [dm3] 2R_20013216_SNP [dm6]	T	A	1.652e^-4	0.661	INTERGENIC
3R	26525079	3R_26525079_SNP [dm3] 3R_30699357_SNP [dm6]	A	G	1.660e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9322946	2L_9322946_SNP [dm3] 2L_9322946_SNP [dm6]	T	A	1.664e^-4	0.661	INTERGENIC
2R	13336009	2R_13336009_SNP [dm3] 2R_17448504_SNP [dm6]	T	A	1.668e^-4	0.661	DOWNSTREAM mthl3 INTERGENIC
2R	8911116	2R_8911116_SNP [dm3] 2R_13023611_SNP [dm6]	G	C	1.669e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	18065438	X_18065438_SNP [dm3] X_18171405_SNP [dm6]	C	T	1.675e^-4	0.661	UTR_3_PRIME Frq1
3L	18436975	3L_18436975_SNP [dm3] 3L_18443875_SNP [dm6]	T	C	1.678e^-4	0.661	INTERGENIC
3L	10962802	3L_10962802_SNP [dm3] 3L_10969702_SNP [dm6]	G	C	1.678e^-4	0.661	INTERGENIC
2R	3578260	2R_3578260_INS [dm3] 2R_7690755_INS [dm6]	A	AA	1.691e^-4	0.661	INTRON CG1399	TF binding site BDTNP1_TFBS_da
3L	10503056	3L_10503056_INS [dm3] 3L_10509956_INS [dm6]	C	CC	1.698e^-4	0.661	INTRON A2bp1
3L	2821565	3L_2821565_SNP [dm3] 3L_2821565_SNP [dm6]	A	T	1.712e^-4	0.661	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22291295	3R_22291295_DEL [dm3] 3R_26465573_DEL [dm6]	TT	T	1.716e^-4	0.661	UTR_5_PRIME CG5455 INTRON CG5455
2L	8060528	2L_8060528_SNP [dm3] 2L_8060528_SNP [dm6]	T	A	1.717e^-4	0.661	INTRON poe
2L	21062100	2L_21062100_SNP [dm3] 2L_21062100_SNP [dm6]	A	C	1.717e^-4	0.661	INTRON CG9265
3R	12718872	3R_12718872_SNP [dm3] 3R_16893150_SNP [dm6]	G	A	1.720e^-4	0.661	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10560038	2R_10560038_DEL [dm3] 2R_14672533_DEL [dm6]	TAT	T	1.721e^-4	0.661	DOWNSTREAM CG12866 INTRON mspo
2R	17371411	2R_17371411_SNP [dm3] 2R_21483906_SNP [dm6]	A	T	1.722e^-4	0.661	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4317060	3L_4317060_SNP [dm3] 3L_4317060_SNP [dm6]	A	T	1.727e^-4	0.661	SYNONYMOUS_CODING Claspin
X	6248119	X_6248119_SNP [dm3] X_6354086_SNP [dm6]	T	C	1.732e^-4	0.661	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5246322	3L_5246322_SNP [dm3] 3L_5253222_SNP [dm6]	A	G	1.734e^-4	0.661	INTRON shep
X	12322398	X_12322398_SNP [dm3] X_12428365_SNP [dm6]	C	T	1.744e^-4	0.661	INTERGENIC
3L	18406458	3L_18406458_SNP [dm3] 3L_18413358_SNP [dm6]	T	C	1.748e^-4	0.661	INTERGENIC
3L	4364338	3L_4364338_SNP [dm3] 3L_4364338_SNP [dm6]	T	A	1.752e^-4	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17896477	2L_17896477_SNP [dm3] 2L_17896477_SNP [dm6]	A	C	1.753e^-4	0.661	INTERGENIC
3L	18839664	3L_18839664_SNP [dm3] 3L_18846564_SNP [dm6]	G	A	1.754e^-4	0.661	UPSTREAM Indy INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11892141	2L_11892141_SNP [dm3] 2L_11892141_SNP [dm6]	C	T	1.759e^-4	0.661	INTRON Pde1c
2R	13614955	2R_13614955_SNP [dm3] 2R_17727450_SNP [dm6]	A	G	1.761e^-4	0.661	SYNONYMOUS_CODING CG4975 UTR_5_PRIME CG4984 UPSTREAM Snx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8004637	3L_8004637_SNP [dm3] 3L_8011537_SNP [dm6]	G	A	1.768e^-4	0.661	INTRON nmo
2R	10807506	2R_10807506_DEL [dm3] 2R_14920001_DEL [dm6]	CT	C	1.770e^-4	0.661	INTRON CG10249	TF binding site mE1_TFBS_cnc
3L	17222263	3L_17222263_SNP [dm3] 3L_17229163_SNP [dm6]	C	T	1.773e^-4	0.661	INTRON Rbp6
3L	14186762	3L_14186762_SNP [dm3] 3L_14193662_SNP [dm6]	G	A	1.780e^-4	0.661	INTRON nuf	TF binding site BDTNP1_TFBS_twi
2L	20233640	2L_20233640_SNP [dm3] 2L_20233640_SNP [dm6]	A	G	1.780e^-4	0.661	INTERGENIC
3L	1416917	3L_1416917_SNP [dm3] 3L_1416917_SNP [dm6]	C	G	1.782e^-4	0.661	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9379961	2R_9379961_SNP [dm3] 2R_13492456_SNP [dm6]	T	C	1.784e^-4	0.661	INTRON bbc
2R	9763713	2R_9763713_SNP [dm3] 2R_13876208_SNP [dm6]	G	A	1.792e^-4	0.661	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19919915	2R_19919915_SNP [dm3] 2R_24032392_SNP [dm6]	G	C	1.793e^-4	0.661	SYNONYMOUS_CODING Chi UPSTREAM CG30172	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6377974	X_6377974_SNP [dm3] X_6483941_SNP [dm6]	G	A	1.796e^-4	0.661	INTRON CG42340
3R	8736476	3R_8736476_SNP [dm3] 3R_12910754_SNP [dm6]	T	G	1.796e^-4	0.661	SYNONYMOUS_CODING CG10909	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21747097	2L_21747097_SNP [dm3] 2L_21747097_SNP [dm6]	C	A	1.800e^-4	0.661	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16107900	2L_16107900_SNP [dm3] 2L_16107900_SNP [dm6]	A	C	1.801e^-4	0.661	INTERGENIC
2R	10807505	2R_10807505_SNP [dm3] 2R_14920000_SNP [dm6]	A	T	1.801e^-4	0.661	INTRON CG10249	TF binding site mE1_TFBS_cnc
3L	11227870	3L_11227870_SNP [dm3] 3L_11234770_SNP [dm6]	G	A	1.808e^-4	0.661	INTRON Ir68a
3R	26732438	3R_26732438_SNP [dm3] 3R_30906716_SNP [dm6]	C	G	1.809e^-4	0.661	INTERGENIC
X	12852943	X_12852943_SNP [dm3] X_12958910_SNP [dm6]	C	G	1.811e^-4	0.661	UPSTREAM CG32642 INTERGENIC
X	18687865	X_18687865_SNP [dm3] X_18793832_SNP [dm6]	G	A	1.821e^-4	0.661	SYNONYMOUS_CODING Pk17E DOWNSTREAM bnb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9890857	3R_9890857_SNP [dm3] 3R_14065135_SNP [dm6]	A	G	1.830e^-4	0.661	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7856707	3L_7856707_SNP [dm3] 3L_7863607_SNP [dm6]	A	T	1.830e^-4	0.661	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26637072	3R_26637072_SNP [dm3] 3R_30811350_SNP [dm6]	G	A	1.831e^-4	0.661	INTRON cindr
3R	15278065	3R_15278065_SNP [dm3] 3R_19452343_SNP [dm6]	A	G	1.832e^-4	0.661	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	26731430	3R_26731430_SNP [dm3] 3R_30905708_SNP [dm6]	C	T	1.838e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26732465	3R_26732465_SNP [dm3] 3R_30906743_SNP [dm6]	C	T	1.838e^-4	0.661	INTERGENIC
3R	26732480	3R_26732480_SNP [dm3] 3R_30906758_SNP [dm6]	T	G	1.838e^-4	0.661	INTERGENIC
2L	4700828	2L_4700828_SNP [dm3] 2L_4700828_SNP [dm6]	T	C	1.846e^-4	0.661	DOWNSTREAM Taf12L INTRON CG34351
2R	18223508	2R_18223508_SNP [dm3] 2R_22336003_SNP [dm6]	G	A	1.846e^-4	0.661	INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5530474	3L_5530474_SNP [dm3] 3L_5537374_SNP [dm6]	C	T	1.848e^-4	0.661	INTERGENIC
2R	7947465	2R_7947465_SNP [dm3] 2R_12059960_SNP [dm6]	G	A	1.849e^-4	0.661	INTRON Drep-3
3L	4364465	3L_4364465_INS [dm3] 3L_4364465_INS [dm6]	A	AAAC	1.858e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12570376	X_12570376_SNP [dm3] X_12676343_SNP [dm6]	T	G	1.862e^-4	0.661	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
3R	13850038	3R_13850038_SNP [dm3] 3R_18024316_SNP [dm6]	G	C	1.863e^-4	0.661	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
3R	25160955	3R_25160955_SNP [dm3] 3R_29335233_SNP [dm6]	G	C	1.866e^-4	0.661	INTERGENIC
2L	8990401	2L_8990401_SNP [dm3] 2L_8990401_SNP [dm6]	C	T	1.867e^-4	0.661	UPSTREAM rost INTERGENIC
3R	23255708	3R_23255708_SNP [dm3] 3R_27429986_SNP [dm6]	G	A	1.867e^-4	0.661	INTRON side
3R	9290391	3R_9290391_SNP [dm3] 3R_13464669_SNP [dm6]	T	C	1.873e^-4	0.661	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
2L	1539608	2L_1539608_SNP [dm3] 2L_1539608_SNP [dm6]	C	A	1.881e^-4	0.661	INTERGENIC
2L	9035993	2L_9035993_SNP [dm3] 2L_9035993_SNP [dm6]	G	C	1.884e^-4	0.661	INTERGENIC
X	6496009	X_6496009_SNP [dm3] X_6601976_SNP [dm6]	G	A	1.894e^-4	0.661	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	24200890	3R_24200890_SNP [dm3] 3R_28375168_SNP [dm6]	C	T	1.896e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10199285	3R_10199285_SNP [dm3] 3R_14373563_SNP [dm6]	G	A	1.898e^-4	0.661	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9047412	3R_9047412_SNP [dm3] 3R_13221690_SNP [dm6]	T	G	1.906e^-4	0.661	INTERGENIC
3L	5994399	3L_5994399_SNP [dm3] 3L_6001299_SNP [dm6]	A	G	1.906e^-4	0.661	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17062706	X_17062706_INS [dm3] X_17168673_INS [dm6]	T	TC	1.909e^-4	0.661	INTRON baz
2L	17884011	2L_17884011_INS [dm3] 2L_17884011_INS [dm6]	C	CAT	1.911e^-4	0.661	INTERGENIC
X	6519878	X_6519878_SNP [dm3] X_6625845_SNP [dm6]	T	C	1.915e^-4	0.661	INTRON pigs
3R	26492573	3R_26492573_SNP [dm3] 3R_30666851_SNP [dm6]	T	G	1.918e^-4	0.661	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	8911114	2R_8911114_SNP [dm3] 2R_13023609_SNP [dm6]	C	G	1.920e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20299676	3R_20299676_SNP [dm3] 3R_24473954_SNP [dm6]	T	G	1.923e^-4	0.661	INTERGENIC
3R	22932277	3R_22932277_INS [dm3] 3R_27106555_INS [dm6]	G	GAG	1.924e^-4	0.661	UPSTREAM CG6074 INTERGENIC
3R	6543010	3R_6543010_SNP [dm3] 3R_10717288_SNP [dm6]	G	C	1.925e^-4	0.661	INTERGENIC
2R	6575232	2R_6575232_SNP [dm3] 2R_10687727_SNP [dm6]	G	C	1.936e^-4	0.661	INTRON stan
2L	14814990	2L_14814990_DEL [dm3] 2L_14814990_DEL [dm6]	GAATATTTAA	G	1.939e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17734975	2R_17734975_DEL [dm3] 2R_21847470_DEL [dm6]	CC	T	1.945e^-4	0.661	DOWNSTREAM tRNA:CR30406 INTERGENIC
2R	16923852	2R_16923852_SNP [dm3] 2R_21036347_SNP [dm6]	T	G	1.950e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	20605126	3L_20605126_SNP [dm3] 3L_20612026_SNP [dm6]	T	C	1.954e^-4	0.661	INTRON knrl	regulatory region REDfly_CRMs
2L	4911560	2L_4911560_SNP [dm3] 2L_4911560_SNP [dm6]	C	T	1.956e^-4	0.661	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26256777	3R_26256777_SNP [dm3] 3R_30431055_SNP [dm6]	C	T	1.958e^-4	0.661	INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	26256791	3R_26256791_SNP [dm3] 3R_30431069_SNP [dm6]	G	C	1.958e^-4	0.661	UPSTREAM CG15534 INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	11176768	3R_11176768_SNP [dm3] 3R_15351046_SNP [dm6]	G	T	1.958e^-4	0.661	UPSTREAM CG5038 & 1 other DOWNSTREAM CG42726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9181242	3R_9181242_SNP [dm3] 3R_13355520_SNP [dm6]	C	G	1.959e^-4	0.661	DOWNSTREAM mthl12 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	8060527	2L_8060527_SNP [dm3] 2L_8060527_SNP [dm6]	A	T	1.962e^-4	0.661	INTRON poe
2R	17863203	2R_17863203_SNP [dm3] 2R_21975698_SNP [dm6]	A	G	1.964e^-4	0.661	UTR_3_PRIME CG9304 UPSTREAM Gr58c
2L	10707152	2L_10707152_SNP [dm3] 2L_10707152_SNP [dm6]	C	T	1.964e^-4	0.661	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
3R	9858760	3R_9858760_SNP [dm3] 3R_14033038_SNP [dm6]	G	A	1.965e^-4	0.661	UPSTREAM rdx INTRON CG3061	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	10721715	2L_10721715_SNP [dm3] 2L_10721715_SNP [dm6]	C	A	1.965e^-4	0.661	INTERGENIC
2R	8564488	2R_8564488_SNP [dm3] 2R_12676983_SNP [dm6]	A	T	1.970e^-4	0.661	UPSTREAM CG42708 INTRON CG42708
2L	9412519	2L_9412519_SNP [dm3] 2L_9412519_SNP [dm6]	G	A	1.974e^-4	0.661	INTRON Shawl
2R	19484911	2R_19484911_SNP [dm3] 2R_23597388_SNP [dm6]	T	C	1.978e^-4	0.661	SYNONYMOUS_CODING apt
X	12852935	X_12852935_INS [dm3] X_12958902_INS [dm6]	A	AA	1.985e^-4	0.661	UPSTREAM CG32642 INTERGENIC
3R	10888684	3R_10888684_SNP [dm3] 3R_15062962_SNP [dm6]	G	A	1.986e^-4	0.661	INTRON dpr9
3R	10411636	3R_10411636_INS [dm3] 3R_14585914_INS [dm6]	A	AA	1.991e^-4	0.661	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6806485	2R_6806485_SNP [dm3] 2R_10918980_SNP [dm6]	G	A	1.992e^-4	0.661	INTERGENIC
3R	11979925	3R_11979925_SNP [dm3] 3R_16154203_SNP [dm6]	T	C	2.005e^-4	0.661	UPSTREAM CG6006 INTERGENIC
X	5923052	X_5923052_SNP [dm3] X_6029019_SNP [dm6]	C	G	2.007e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7881482	3R_7881482_SNP [dm3] 3R_12055760_SNP [dm6]	T	A	2.013e^-4	0.661	INTERGENIC
2R	2736528	2R_2736528_SNP [dm3] 2R_6849023_SNP [dm6]	G	A	2.016e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18044654	2L_18044654_DEL [dm3] 2L_18044654_DEL [dm6]	AA	A	2.017e^-4	0.661	INTRON rdo
3R	7686942	3R_7686942_SNP [dm3] 3R_11861220_SNP [dm6]	C	T	2.022e^-4	0.661	INTRON CG6959
3R	17247051	3R_17247051_SNP [dm3] 3R_21421329_SNP [dm6]	C	A	2.029e^-4	0.661	INTRON lbl	TF binding site mE1_TFBS_cad
3R	9552229	3R_9552229_SNP [dm3] 3R_13726507_SNP [dm6]	C	T	2.033e^-4	0.661	INTRON CG34383
3R	10202596	3R_10202596_SNP [dm3] 3R_14376874_SNP [dm6]	T	C	2.038e^-4	0.661	EXON CR44943	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	12927335	3L_12927335_SNP [dm3] 3L_12934235_SNP [dm6]	C	A	2.039e^-4	0.661	INTERGENIC
3R	6548161	3R_6548161_SNP [dm3] 3R_10722439_SNP [dm6]	C	A	2.039e^-4	0.661	INTERGENIC
2R	18060648	2R_18060648_SNP [dm3] 2R_22173143_SNP [dm6]	G	A	2.046e^-4	0.661	SYNONYMOUS_CODING CG3045 DOWNSTREAM a
2R	18061066	2R_18061066_SNP [dm3] 2R_22173561_SNP [dm6]	T	G	2.046e^-4	0.661	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2R	18061102	2R_18061102_SNP [dm3] 2R_22173597_SNP [dm6]	A	G	2.046e^-4	0.661	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
3L	6754743	3L_6754743_DEL [dm3] 3L_6761643_DEL [dm6]	GG	G	2.047e^-4	0.661	UPSTREAM CG32392 INTRON CG32392
3R	15278062	3R_15278062_SNP [dm3] 3R_19452340_SNP [dm6]	T	A	2.057e^-4	0.661	INTRON CG31221	TF binding site mE1_TFBS_Kr
3R	8728632	3R_8728632_SNP [dm3] 3R_12902910_SNP [dm6]	G	T	2.066e^-4	0.661	INTERGENIC
X	12626830	X_12626830_SNP [dm3] X_12732797_SNP [dm6]	T	A	2.068e^-4	0.661	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	9910425	3R_9910425_SNP [dm3] 3R_14084703_SNP [dm6]	C	A	2.069e^-4	0.661	INTRON foxo
2R	14152586	2R_14152586_SNP [dm3] 2R_18265081_SNP [dm6]	G	A	2.069e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17238167	3L_17238167_SNP [dm3] 3L_17245067_SNP [dm6]	C	T	2.072e^-4	0.661	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
2L	9017923	2L_9017923_SNP [dm3] 2L_9017923_SNP [dm6]	A	C	2.076e^-4	0.661	INTERGENIC
3L	16716864	3L_16716864_SNP [dm3] 3L_16723764_SNP [dm6]	G	T	2.081e^-4	0.661	UTR_3_PRIME Dab DOWNSTREAM CG13026	TF binding site mE1_TFBS_cad
2L	17882573	2L_17882573_SNP [dm3] 2L_17882573_SNP [dm6]	T	C	2.083e^-4	0.661	INTERGENIC
3R	6543032	3R_6543032_SNP [dm3] 3R_10717310_SNP [dm6]	G	A	2.091e^-4	0.661	INTERGENIC
3L	1034339	3L_1034339_SNP [dm3] 3L_1034339_SNP [dm6]	T	C	2.092e^-4	0.661	UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10789685	2L_10789685_SNP [dm3] 2L_10789685_SNP [dm6]	C	T	2.093e^-4	0.661	UPSTREAM CG31870 INTRON CG31869
2L	21751391	2L_21751391_SNP [dm3] 2L_21751391_SNP [dm6]	T	A	2.096e^-4	0.661	INTRON step	transposable element FlyBase
2R	17589494	2R_17589494_SNP [dm3] 2R_21701989_SNP [dm6]	C	G	2.105e^-4	0.661	UTR_5_PRIME HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4040016	2L_4040016_SNP [dm3] 2L_4040016_SNP [dm6]	A	G	2.109e^-4	0.661	INTRON ed
2L	16572662	2L_16572662_DEL [dm3] 2L_16572662_DEL [dm6]	CTG	T	2.111e^-4	0.661	INTRON CG42389
2R	14129612	2R_14129612_SNP [dm3] 2R_18242107_SNP [dm6]	G	A	2.114e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7883893	3R_7883893_SNP [dm3] 3R_12058171_SNP [dm6]	C	T	2.114e^-4	0.661	INTERGENIC
3R	6298557	3R_6298557_SNP [dm3] 3R_10472835_SNP [dm6]	C	T	2.120e^-4	0.661	INTERGENIC
2L	8990413	2L_8990413_SNP [dm3] 2L_8990413_SNP [dm6]	A	T	2.123e^-4	0.661	UPSTREAM rost INTERGENIC
2R	12032479	2R_12032479_SNP [dm3] 2R_16144974_SNP [dm6]	C	T	2.124e^-4	0.661	SPLICE_SITE_REGION Aats-cys DOWNSTREAM Ext2 INTRON Aats-cys
2L	1539602	2L_1539602_SNP [dm3] 2L_1539602_SNP [dm6]	T	A	2.134e^-4	0.661	INTERGENIC
2L	9416427	2L_9416427_SNP [dm3] 2L_9416427_SNP [dm6]	G	A	2.141e^-4	0.661	UPSTREAM Mco1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12802206	2L_12802206_SNP [dm3] 2L_12802206_SNP [dm6]	A	C	2.142e^-4	0.661	INTERGENIC
3R	26871503	3R_26871503_SNP [dm3] 3R_31045781_SNP [dm6]	C	T	2.144e^-4	0.661	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
3L	17216101	3L_17216101_SNP [dm3] 3L_17223001_SNP [dm6]	T	C	2.154e^-4	0.661	INTRON Rbp6
3R	13462744	3R_13462744_SNP [dm3] 3R_17637022_SNP [dm6]	C	T	2.155e^-4	0.661	INTRON CG43175
2R	16043078	2R_16043078_SNP [dm3] 2R_20155573_SNP [dm6]	G	A	2.160e^-4	0.661	INTERGENIC
3L	15663472	3L_15663472_SNP [dm3] 3L_15670372_SNP [dm6]	A	G	2.164e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26492604	3R_26492604_SNP [dm3] 3R_30666882_SNP [dm6]	C	A	2.174e^-4	0.661	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	21055024	3L_21055024_SNP [dm3] 3L_21061924_SNP [dm6]	A	G	2.176e^-4	0.661	INTRON siz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17489659	2L_17489659_SNP [dm3] 2L_17489659_SNP [dm6]	C	A	2.183e^-4	0.661	INTRON qua	TF binding site mE1_TFBS_cad
3R	8736507	3R_8736507_SNP [dm3] 3R_12910785_SNP [dm6]	C	T	2.184e^-4	0.661	NON_SYNONYMOUS_CODING CG10909	TF binding site mE1_TFBS_sens
X	20720562	X_20720562_SNP [dm3] X_20849535_SNP [dm6]	G	T	2.189e^-4	0.661	INTRON shakB
3L	7866714	3L_7866714_SNP [dm3] 3L_7873614_SNP [dm6]	C	G	2.192e^-4	0.661	INTRON CG32365
3R	9174593	3R_9174593_SNP [dm3] 3R_13348871_SNP [dm6]	T	C	2.195e^-4	0.661	INTERGENIC
3R	16018370	3R_16018370_SNP [dm3] 3R_20192648_SNP [dm6]	T	A	2.197e^-4	0.661	INTERGENIC
3R	25979351	3R_25979351_SNP [dm3] 3R_30153629_SNP [dm6]	G	A	2.198e^-4	0.661	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	17656486	2R_17656486_SNP [dm3] 2R_21768981_SNP [dm6]	G	A	2.200e^-4	0.661	NON_SYNONYMOUS_CODING CG30395
3R	10552813	3R_10552813_SNP [dm3] 3R_14727091_SNP [dm6]	T	G	2.202e^-4	0.661	INTRON CG7530
2R	18060834	2R_18060834_SNP [dm3] 2R_22173329_SNP [dm6]	T	C	2.206e^-4	0.661	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2R	12032477	2R_12032477_SNP [dm3] 2R_16144972_SNP [dm6]	G	T	2.215e^-4	0.661	SPLICE_SITE_REGION Aats-cys DOWNSTREAM Ext2 INTRON Aats-cys
3L	4364468	3L_4364468_SNP [dm3] 3L_4364468_SNP [dm6]	T	A	2.215e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20746719	3L_20746719_SNP [dm3] 3L_20753619_SNP [dm6]	T	C	2.216e^-4	0.661	INTERGENIC
3L	17595624	3L_17595624_SNP [dm3] 3L_17602524_SNP [dm6]	T	C	2.216e^-4	0.661	INTRON Eip74EF
3R	12904299	3R_12904299_SNP [dm3] 3R_17078577_SNP [dm6]	A	G	2.217e^-4	0.661	UPSTREAM Keap1 INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	5530524	3L_5530524_SNP [dm3] 3L_5537424_SNP [dm6]	A	T	2.219e^-4	0.661	DOWNSTREAM CG10625 INTERGENIC
3R	17253416	3R_17253416_SNP [dm3] 3R_21427694_SNP [dm6]	C	T	2.220e^-4	0.661	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9047411	3R_9047411_SNP [dm3] 3R_13221689_SNP [dm6]	T	A	2.221e^-4	0.661	INTERGENIC
2L	5405502	2L_5405502_SNP [dm3] 2L_5405502_SNP [dm6]	C	T	2.226e^-4	0.661	INTRON H15
3R	26987188	3R_26987188_SNP [dm3] 3R_31161466_SNP [dm6]	C	G	2.227e^-4	0.661	INTRON Gycbeta100B & 1 other
X	20460101	X_20460101_SNP [dm3] X_20589074_SNP [dm6]	C	A	2.227e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9876802	3R_9876802_SNP [dm3] 3R_14051080_SNP [dm6]	A	T	2.227e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13353423	3L_13353423_SNP [dm3] 3L_13360323_SNP [dm6]	G	T	2.227e^-4	0.661	INTERGENIC
3R	11176188	3R_11176188_SNP [dm3] 3R_15350466_SNP [dm6]	A	G	2.228e^-4	0.661	SYNONYMOUS_CODING Trs33 UPSTREAM CG5038 DOWNSTREAM CG42726 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	16141291	X_16141291_SNP [dm3] X_16247258_SNP [dm6]	G	A	2.232e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_sens
X	746677	X_746677_DEL [dm3] X_852644_DEL [dm6]	TT	T	2.236e^-4	0.661	INTRON CG43867
X	15172544	X_15172544_SNP [dm3] X_15278511_SNP [dm6]	G	A	2.250e^-4	0.661	INTERGENIC
X	2569210	X_2569210_INS [dm3] X_2675177_INS [dm6]	A	AGA	2.250e^-4	0.661	UTR_3_PRIME sgg UPSTREAM CR45197 DOWNSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10416193	3R_10416193_SNP [dm3] 3R_14590471_SNP [dm6]	A	T	2.254e^-4	0.661	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2061400	X_2061400_DEL [dm3] X_2167367_DEL [dm6]	TGGTGGAGTACTCCT...	T	2.254e^-4	0.661	INTRON CG3630
2R	17921466	2R_17921466_SNP [dm3] 2R_22033961_SNP [dm6]	C	T	2.257e^-4	0.661	UPSTREAM CG9308 INTRON CG34370
3R	18501364	3R_18501364_SNP [dm3] 3R_22675642_SNP [dm6]	A	G	2.258e^-4	0.661	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15283919	3L_15283919_SNP [dm3] 3L_15290819_SNP [dm6]	A	G	2.258e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11628300	2R_11628300_SNP [dm3] 2R_15740795_SNP [dm6]	T	A	2.263e^-4	0.661	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18152314	2R_18152314_DEL [dm3] 2R_22264809_DEL [dm6]	GGAAGAGGAT	G	2.269e^-4	0.661	INTRON dve	TF binding site mE1_TFBS_sens
2R	1822220	2R_1822220_SNP [dm3] 2R_5934715_SNP [dm6]	T	A	2.271e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10715588	2R_10715588_SNP [dm3] 2R_14828083_SNP [dm6]	A	T	2.272e^-4	0.661	INTERGENIC
3R	3119485	3R_3119485_SNP [dm3] 3R_7293763_SNP [dm6]	C	G	2.272e^-4	0.661	INTRON rn
3L	797234	3L_797234_SNP [dm3] 3L_797234_SNP [dm6]	C	G	2.275e^-4	0.661	INTERGENIC
2L	10789894	2L_10789894_SNP [dm3] 2L_10789894_SNP [dm6]	T	A	2.276e^-4	0.661	UPSTREAM CG31870 INTRON CG31869
2R	13614706	2R_13614706_SNP [dm3] 2R_17727201_SNP [dm6]	G	C	2.279e^-4	0.661	NON_SYNONYMOUS_CODING CG4975 UTR_5_PRIME CG4984 UPSTREAM Snx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	15686439	3L_15686439_SNP [dm3] 3L_15693339_SNP [dm6]	A	G	2.285e^-4	0.661	INTERGENIC	silencer mE1_HDAC_PRE
3L	8942295	3L_8942295_SNP [dm3] 3L_8949195_SNP [dm6]	A	G	2.292e^-4	0.661	SYNONYMOUS_CODING CG43783 & 1 other
X	15382868	X_15382868_SNP [dm3] X_15488835_SNP [dm6]	C	T	2.292e^-4	0.661	INTRON Gmap
2L	10721635	2L_10721635_SNP [dm3] 2L_10721635_SNP [dm6]	A	T	2.292e^-4	0.661	INTERGENIC
2L	4855714	2L_4855714_SNP [dm3] 2L_4855714_SNP [dm6]	G	T	2.295e^-4	0.661	INTRON pog
3R	605061	3R_605061_SNP [dm3] 3R_4779339_SNP [dm6]	G	C	2.296e^-4	0.661	INTRON CG14655
2R	7795904	2R_7795904_SNP [dm3] 2R_11908399_SNP [dm6]	C	G	2.296e^-4	0.661	INTRON CG13183
3L	1075805	3L_1075805_SNP [dm3] 3L_1075805_SNP [dm6]	A	C	2.301e^-4	0.661	INTRON bab1
2L	3002173	2L_3002173_SNP [dm3] 2L_3002173_SNP [dm6]	A	T	2.304e^-4	0.661	INTRON CG17265
3R	9197156	3R_9197156_SNP [dm3] 3R_13371434_SNP [dm6]	A	G	2.305e^-4	0.661	SYNONYMOUS_CODING Lip3
3L	12890164	3L_12890164_SNP [dm3] 3L_12897064_SNP [dm6]	T	A	2.309e^-4	0.661	INTERGENIC
3L	15723118	3L_15723118_SNP [dm3] 3L_15730018_SNP [dm6]	G	T	2.310e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7117941	2R_7117941_SNP [dm3] 2R_11230436_SNP [dm6]	A	G	2.315e^-4	0.661	INTRON metro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10699979	3R_10699979_SNP [dm3] 3R_14874257_SNP [dm6]	T	G	2.317e^-4	0.661	UPSTREAM btsz INTRON btsz
3R	9320114	3R_9320114_SNP [dm3] 3R_13494392_SNP [dm6]	G	C	2.329e^-4	0.661	INTERGENIC
2L	11183376	2L_11183376_SNP [dm3] 2L_11183376_SNP [dm6]	C	A	2.330e^-4	0.661	INTRON Ca-beta
2R	1344168	2R_1344168_SNP [dm3] 2R_5456663_SNP [dm6]	T	A	2.343e^-4	0.661	DOWNSTREAM laccase2 INTERGENIC	transposable element FlyBase
3L	11309025	3L_11309025_SNP [dm3] 3L_11315925_SNP [dm6]	T	C	2.354e^-4	0.661	EXON CR44361	TF binding site BDTNP1_TFBS_twi
X	2318786	X_2318786_SNP [dm3] X_2424753_SNP [dm6]	G	A	2.360e^-4	0.661	DOWNSTREAM CG32797 INTERGENIC
2L	4700855	2L_4700855_SNP [dm3] 2L_4700855_SNP [dm6]	A	C	2.369e^-4	0.661	UTR_3_PRIME Taf12L INTRON CG34351
3L	20929951	3L_20929951_SNP [dm3] 3L_20936851_SNP [dm6]	C	A	2.369e^-4	0.661	INTRON fng
2R	16349969	2R_16349969_SNP [dm3] 2R_20462464_SNP [dm6]	T	C	2.372e^-4	0.661	INTRON CG12484
3R	13489040	3R_13489040_SNP [dm3] 3R_17663318_SNP [dm6]	C	T	2.376e^-4	0.661	NON_SYNONYMOUS_CODING CG14322
3R	24087735	3R_24087735_SNP [dm3] 3R_28262013_SNP [dm6]	G	C	2.380e^-4	0.661	DOWNSTREAM CG43125 INTERGENIC
2R	20173695	2R_20173695_SNP [dm3] 2R_24286172_SNP [dm6]	C	G	2.385e^-4	0.661	INTRON nvy	TF binding site mE1_TFBS_chinmo
3R	26362354	3R_26362354_SNP [dm3] 3R_30536632_SNP [dm6]	G	A	2.387e^-4	0.661	INTRON tmod
3R	14866110	3R_14866110_SNP [dm3] 3R_19040388_SNP [dm6]	G	A	2.392e^-4	0.661	NON_SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13734487	3L_13734487_SNP [dm3] 3L_13741387_SNP [dm6]	C	A	2.395e^-4	0.661	INTRON bru-3
X	6247863	X_6247863_SNP [dm3] X_6353830_SNP [dm6]	T	A	2.401e^-4	0.661	INTRON kdn	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2L	10722534	2L_10722534_SNP [dm3] 2L_10722534_SNP [dm6]	A	T	2.401e^-4	0.661	INTERGENIC
2L	10722557	2L_10722557_SNP [dm3] 2L_10722557_SNP [dm6]	A	T	2.401e^-4	0.661	INTERGENIC
3R	17367977	3R_17367977_SNP [dm3] 3R_21542255_SNP [dm6]	G	A	2.402e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	6247644	X_6247644_SNP [dm3] X_6353611_SNP [dm6]	G	A	2.405e^-4	0.661	INTRON kdn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	4698361	2L_4698361_DEL [dm3] 2L_4698361_DEL [dm6]	AA	A	2.405e^-4	0.661	INTRON CG34351
2R	12246310	2R_12246310_SNP [dm3] 2R_16358805_SNP [dm6]	G	A	2.411e^-4	0.661	UPSTREAM CG6262 DOWNSTREAM CR43416 EXON CR45322	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18449810	3R_18449810_SNP [dm3] 3R_22624088_SNP [dm6]	T	C	2.419e^-4	0.661	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	17326987	3R_17326987_SNP [dm3] 3R_21501265_SNP [dm6]	G	A	2.419e^-4	0.661	INTRON C15
X	16330760	X_16330760_SNP [dm3] X_16436727_SNP [dm6]	A	T	2.422e^-4	0.661	NON_SYNONYMOUS_CODING hang DOWNSTREAM CG9947	TF binding site mE1_TFBS_cad
2R	3812911	2R_3812911_SNP [dm3] 2R_7925406_SNP [dm6]	T	A	2.427e^-4	0.661	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	12718716	3R_12718716_SNP [dm3] 3R_16892994_SNP [dm6]	G	C	2.431e^-4	0.661	UPSTREAM iab-8 INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5525270	3L_5525270_SNP [dm3] 3L_5532170_SNP [dm6]	G	A	2.432e^-4	0.661	INTERGENIC
2R	13142258	2R_13142258_SNP [dm3] 2R_17254753_SNP [dm6]	A	G	2.434e^-4	0.661	UPSTREAM CG43272 INTRON mbl & 1 other
3L	17607659	3L_17607659_SNP [dm3] 3L_17614559_SNP [dm6]	C	G	2.437e^-4	0.661	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12802211	2L_12802211_SNP [dm3] 2L_12802211_SNP [dm6]	A	T	2.443e^-4	0.661	INTERGENIC
2R	9250011	2R_9250011_SNP [dm3] 2R_13362506_SNP [dm6]	A	G	2.449e^-4	0.661	EXON CR45312	TF binding site BDTNP1_TFBS_dl
2R	10546334	2R_10546334_SNP [dm3] 2R_14658829_SNP [dm6]	C	A	2.452e^-4	0.661	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6944586	X_6944586_SNP [dm3] X_7050553_SNP [dm6]	C	G	2.455e^-4	0.661	DOWNSTREAM nullo INTRON CG12541
3R	19919360	3R_19919360_SNP [dm3] 3R_24093638_SNP [dm6]	T	A	2.456e^-4	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA
X	7943923	X_7943923_SNP [dm3] X_8049890_SNP [dm6]	T	G	2.456e^-4	0.661	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14152581	2R_14152581_SNP [dm3] 2R_18265076_SNP [dm6]	G	A	2.459e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4364357	3L_4364357_SNP [dm3] 3L_4364357_SNP [dm6]	T	A	2.464e^-4	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16716894	3L_16716894_SNP [dm3] 3L_16723794_SNP [dm6]	A	G	2.467e^-4	0.661	UTR_3_PRIME Dab DOWNSTREAM CG13026	TF binding site mE1_TFBS_cad
2L	9017037	2L_9017037_DEL [dm3] 2L_9017037_DEL [dm6]	ATTCGA	G	2.484e^-4	0.661	INTERGENIC
3L	9402067	3L_9402067_SNP [dm3] 3L_9408967_SNP [dm6]	G	A	2.497e^-4	0.661	NON_SYNONYMOUS_CODING CG4022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	5252877	3L_5252877_INS [dm3] 3L_5259777_INS [dm6]	A	AGA	2.498e^-4	0.661	INTRON shep
3L	5994457	3L_5994457_SNP [dm3] 3L_6001357_SNP [dm6]	G	A	2.503e^-4	0.661	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4364342	3L_4364342_SNP [dm3] 3L_4364342_SNP [dm6]	T	C	2.510e^-4	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11186445	2L_11186445_SNP [dm3] 2L_11186445_SNP [dm6]	A	C	2.516e^-4	0.661	INTRON Ca-beta
2L	10722546	2L_10722546_SNP [dm3] 2L_10722546_SNP [dm6]	C	A	2.516e^-4	0.661	INTERGENIC
2L	10722537	2L_10722537_SNP [dm3] 2L_10722537_SNP [dm6]	G	C	2.516e^-4	0.661	INTERGENIC
2R	18455737	2R_18455737_SNP [dm3] 2R_22568232_SNP [dm6]	G	A	2.524e^-4	0.661	INTRON dnr1	TF binding site mE1_TFBS_Trl
2R	1252056	2R_1252056_SNP [dm3] 2R_5364551_SNP [dm6]	A	T	2.527e^-4	0.661	EXON CR42646
2L	584200	2L_584200_SNP [dm3] 2L_584200_SNP [dm6]	T	G	2.528e^-4	0.661	SYNONYMOUS_CODING Gsc
3L	17588315	3L_17588315_SNP [dm3] 3L_17595215_SNP [dm6]	T	G	2.536e^-4	0.661	INTRON Eip74EF
3L	18080217	3L_18080217_SNP [dm3] 3L_18087117_SNP [dm6]	G	C	2.548e^-4	0.661	UPSTREAM CR32194 INTRON CG34253
X	5721050	X_5721050_SNP [dm3] X_5827017_SNP [dm6]	C	T	2.550e^-4	0.661	INTRON CG15765
X	5927469	X_5927469_SNP [dm3] X_6033436_SNP [dm6]	T	G	2.552e^-4	0.661	INTERGENIC
X	1035750	X_1035750_INS [dm3] X_1141717_INS [dm6]	A	ATA	2.554e^-4	0.661	INTERGENIC
X	1035752	X_1035752_INS [dm3] X_1141719_INS [dm6]	T	TG	2.554e^-4	0.661	INTERGENIC
3R	9197600	3R_9197600_SNP [dm3] 3R_13371878_SNP [dm6]	A	G	2.556e^-4	0.661	UTR_5_PRIME Lip3 UPSTREAM CG34309
2L	16571356	2L_16571356_SNP [dm3] 2L_16571356_SNP [dm6]	C	A	2.564e^-4	0.661	INTRON CG42389
3L	4317225	3L_4317225_SNP [dm3] 3L_4317225_SNP [dm6]	C	G	2.565e^-4	0.661	NON_SYNONYMOUS_CODING Claspin
3R	23965340	3R_23965340_SNP [dm3] 3R_28139618_SNP [dm6]	A	T	2.566e^-4	0.661	INTERGENIC
2R	14152708	2R_14152708_DEL [dm3] 2R_18265203_DEL [dm6]	TTTT	CAC	2.567e^-4	0.661	INTERGENIC
2R	9596462	2R_9596462_SNP [dm3] 2R_13708957_SNP [dm6]	A	T	2.570e^-4	0.661	INTRON fas
3R	26318092	3R_26318092_SNP [dm3] 3R_30492370_SNP [dm6]	A	T	2.576e^-4	0.661	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3L	797108	3L_797108_SNP [dm3] 3L_797108_SNP [dm6]	C	T	2.577e^-4	0.661	INTERGENIC
3R	26009267	3R_26009267_SNP [dm3] 3R_30183545_SNP [dm6]	C	T	2.577e^-4	0.661	DOWNSTREAM CR44262 INTERGENIC
2L	5462362	2L_5462362_SNP [dm3] 2L_5462362_SNP [dm6]	T	C	2.579e^-4	0.661	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	10172974	3R_10172974_INS [dm3] 3R_14347252_INS [dm6]	G	GAG	2.582e^-4	0.661	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10503058	3L_10503058_SNP [dm3] 3L_10509958_SNP [dm6]	G	A	2.582e^-4	0.661	INTRON A2bp1
2L	15096099	2L_15096099_SNP [dm3] 2L_15096099_SNP [dm6]	A	T	2.585e^-4	0.661	UTR_3_PRIME CG15270
3L	10300434	3L_10300434_SNP [dm3] 3L_10307334_SNP [dm6]	C	A	2.589e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26106322	3R_26106322_SNP [dm3] 3R_30280600_SNP [dm6]	C	T	2.590e^-4	0.661	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1817121	2L_1817121_SNP [dm3] 2L_1817121_SNP [dm6]	T	A	2.594e^-4	0.661	INTERGENIC
2R	10588023	2R_10588023_SNP [dm3] 2R_14700518_SNP [dm6]	C	T	2.601e^-4	0.661	INTRON mspo
X	20724947	X_20724947_SNP [dm3] X_20853920_SNP [dm6]	C	T	2.606e^-4	0.661	INTRON shakB
3L	17618560	3L_17618560_SNP [dm3] 3L_17625460_SNP [dm6]	C	T	2.609e^-4	0.661	INTRON CG7510	TF binding site mE1_TFBS_inv
2R	12999539	2R_12999539_SNP [dm3] 2R_17112034_SNP [dm6]	C	T	2.615e^-4	0.661	INTRON CG15611
2L	9831685	2L_9831685_INS [dm3] 2L_9831685_INS [dm6]	A	AG	2.622e^-4	0.661	INTRON nAChRalpha6
3L	13616465	3L_13616465_SNP [dm3] 3L_13623365_SNP [dm6]	G	T	2.625e^-4	0.661	INTRON bru-3
2L	21909561	2L_21909561_DEL [dm3] 2L_21909561_DEL [dm6]	ATC	A	2.634e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16186654	2R_16186654_SNP [dm3] 2R_20299149_SNP [dm6]	T	A	2.635e^-4	0.661	INTERGENIC
2L	10114952	2L_10114952_SNP [dm3] 2L_10114952_SNP [dm6]	A	T	2.638e^-4	0.661	INTRON CG44153 & 1 other
2L	21060741	2L_21060741_SNP [dm3] 2L_21060741_SNP [dm6]	C	T	2.639e^-4	0.661	INTRON CG9265
3L	4364355	3L_4364355_SNP [dm3] 3L_4364355_SNP [dm6]	C	G	2.641e^-4	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10635966	3L_10635966_SNP [dm3] 3L_10642866_SNP [dm6]	C	T	2.642e^-4	0.661	NON_SYNONYMOUS_CODING CG14154 UPSTREAM CG14153 INTRON CG32066
3R	12564168	3R_12564168_SNP [dm3] 3R_16738446_SNP [dm6]	G	T	2.645e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6262251	2R_6262251_SNP [dm3] 2R_10374746_SNP [dm6]	C	A	2.650e^-4	0.661	INTRON CG42732
2R	1381094	2R_1381094_SNP [dm3] 2R_5493589_SNP [dm6]	T	G	2.656e^-4	0.661	INTRON CG30440
3R	17710220	3R_17710220_SNP [dm3] 3R_21884498_SNP [dm6]	A	G	2.661e^-4	0.661	UPSTREAM CR45046 & 1 other DOWNSTREAM CG17819 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	16463665	3L_16463665_SNP [dm3] 3L_16470565_SNP [dm6]	T	G	2.663e^-4	0.661	UTR_3_PRIME aos INTRON CG33158
2L	15254842	2L_15254842_SNP [dm3] 2L_15254842_SNP [dm6]	T	C	2.668e^-4	0.661	UTR_3_PRIME Pol32 DOWNSTREAM Pol32 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10783298	2L_10783298_SNP [dm3] 2L_10783298_SNP [dm6]	T	C	2.674e^-4	0.661	INTRON CG31869
2R	3517486	2R_3517486_SNP [dm3] 2R_7629981_SNP [dm6]	G	T	2.677e^-4	0.661	INTRON CG43340	TF binding site mE1_TFBS_cad
3L	4364463	3L_4364463_SNP [dm3] 3L_4364463_SNP [dm6]	T	A	2.684e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25268104	3R_25268104_SNP [dm3] 3R_29442382_SNP [dm6]	A	G	2.685e^-4	0.661	INTRON Ptp99A
3L	23054129	3L_23054129_DEL [dm3] 3L_23061029_DEL [dm6]	AG	A	2.685e^-4	0.661	INTERGENIC
2L	21771062	2L_21771062_DEL [dm3] 2L_21771062_DEL [dm6]	AA	A	2.692e^-4	0.661	INTRON CG31612
3L	13947488	3L_13947488_SNP [dm3] 3L_13954388_SNP [dm6]	G	T	2.699e^-4	0.661	INTRON CG32137
2L	9199408	2L_9199408_SNP [dm3] 2L_9199408_SNP [dm6]	C	T	2.702e^-4	0.661	INTRON tai
3L	2597993	3L_2597993_SNP [dm3] 3L_2597993_SNP [dm6]	C	T	2.704e^-4	0.661	NON_SYNONYMOUS_CODING CG12182 DOWNSTREAM CG16984	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25237073	3R_25237073_SNP [dm3] 3R_29411351_SNP [dm6]	A	T	2.710e^-4	0.661	INTRON Ptp99A
2L	15903311	2L_15903311_SNP [dm3] 2L_15903311_SNP [dm6]	T	A	2.723e^-4	0.661	UPSTREAM CG31821 INTERGENIC
2L	17906935	2L_17906935_SNP [dm3] 2L_17906935_SNP [dm6]	A	C	2.725e^-4	0.661	INTERGENIC
3L	9402216	3L_9402216_SNP [dm3] 3L_9409116_SNP [dm6]	G	A	2.726e^-4	0.661	SYNONYMOUS_CODING CG4022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6042336	2L_6042336_SNP [dm3] 2L_6042336_SNP [dm6]	T	G	2.726e^-4	0.661	SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3918305	3L_3918305_SNP [dm3] 3L_3918305_SNP [dm6]	T	A	2.731e^-4	0.661	INTRON Eip63F-1
3R	25963602	3R_25963602_SNP [dm3] 3R_30137880_SNP [dm6]	C	T	2.743e^-4	0.661	INTRON AdoR	TF binding site mE1_TFBS_cad
3R	10320912	3R_10320912_SNP [dm3] 3R_14495190_SNP [dm6]	C	A	2.754e^-4	0.661	INTERGENIC
3L	17238174	3L_17238174_SNP [dm3] 3L_17245074_SNP [dm6]	T	C	2.755e^-4	0.661	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
3L	17821560	3L_17821560_SNP [dm3] 3L_17828460_SNP [dm6]	G	T	2.759e^-4	0.661	INTRON Grd
2L	14771830	2L_14771830_INS [dm3] 2L_14771830_INS [dm6]	T	TA	2.763e^-4	0.661	INTERGENIC
3L	23053359	3L_23053359_SNP [dm3] 3L_23060259_SNP [dm6]	T	C	2.766e^-4	0.661	INTERGENIC	transposable element FlyBase
3R	13489071	3R_13489071_SNP [dm3] 3R_17663349_SNP [dm6]	T	C	2.767e^-4	0.661	SYNONYMOUS_CODING CG14322
2R	4575228	2R_4575228_SNP [dm3] 2R_8687723_SNP [dm6]	C	T	2.772e^-4	0.661	INTERGENIC
2L	14880779	2L_14880779_SNP [dm3] 2L_14880779_SNP [dm6]	G	A	2.773e^-4	0.661	INTRON Mst35Ba
2R	8611492	2R_8611492_SNP [dm3] 2R_12723987_SNP [dm6]	C	A	2.775e^-4	0.661	INTRON CG42663
2L	4140774	2L_4140774_SNP [dm3] 2L_4140774_SNP [dm6]	T	A	2.776e^-4	0.661	INTERGENIC
3L	18964491	3L_18964491_SNP [dm3] 3L_18971391_SNP [dm6]	T	A	2.787e^-4	0.661	INTERGENIC
2R	13856057	2R_13856057_SNP [dm3] 2R_17968552_SNP [dm6]	G	A	2.815e^-4	0.661	INTERGENIC
X	6247864	X_6247864_SNP [dm3] X_6353831_SNP [dm6]	G	T	2.818e^-4	0.661	INTRON kdn	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	6829100	2R_6829100_SNP [dm3] 2R_10941595_SNP [dm6]	C	T	2.825e^-4	0.661	UTR_5_PRIME Spn47C
2R	15228370	2R_15228370_SNP [dm3] 2R_19340865_SNP [dm6]	G	A	2.829e^-4	0.661	UPSTREAM CG9975 INTRON Rgk1
3R	25269021	3R_25269021_DEL [dm3] 3R_29443299_DEL [dm6]	GG	G	2.830e^-4	0.661	INTRON Ptp99A
3L	2384913	3L_2384913_SNP [dm3] 3L_2384913_SNP [dm6]	T	C	2.834e^-4	0.661	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2220271	X_2220271_SNP [dm3] X_2326238_SNP [dm6]	C	T	2.844e^-4	0.661	UPSTREAM CG14050 & 1 other INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12995200	2R_12995200_SNP [dm3] 2R_17107695_SNP [dm6]	G	T	2.854e^-4	0.661	DOWNSTREAM CG30456 INTERGENIC
X	11003354	X_11003354_SNP [dm3] X_11109321_SNP [dm6]	A	T	2.859e^-4	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3R	18501336	3R_18501336_SNP [dm3] 3R_22675614_SNP [dm6]	G	A	2.864e^-4	0.661	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11881349	2L_11881349_SNP [dm3] 2L_11881349_SNP [dm6]	A	T	2.864e^-4	0.661	INTRON Pde1c	TF binding site mE1_TFBS_inv
2L	10526389	2L_10526389_SNP [dm3] 2L_10526389_SNP [dm6]	T	C	2.866e^-4	0.661	INTERGENIC
3L	7332730	3L_7332730_SNP [dm3] 3L_7339630_SNP [dm6]	C	A	2.866e^-4	0.661	UTR_5_PRIME lark UPSTREAM eco INTRON lark	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13727694	3L_13727694_SNP [dm3] 3L_13734594_SNP [dm6]	C	G	2.871e^-4	0.661	INTRON bru-3
X	13795309	X_13795309_SNP [dm3] X_13901276_SNP [dm6]	A	C	2.880e^-4	0.661	INTRON mamo
3L	7853910	3L_7853910_SNP [dm3] 3L_7860810_SNP [dm6]	T	C	2.882e^-4	0.661	INTRON Pdp1
2L	15254830	2L_15254830_SNP [dm3] 2L_15254830_SNP [dm6]	A	G	2.885e^-4	0.661	UTR_3_PRIME Pol32 DOWNSTREAM Pol32 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9588278	2L_9588278_SNP [dm3] 2L_9588278_SNP [dm6]	C	A	2.893e^-4	0.661	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4364358	3L_4364358_SNP [dm3] 3L_4364358_SNP [dm6]	T	A	2.895e^-4	0.661	UPSTREAM mRpS6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11003785	X_11003785_SNP [dm3] X_11109752_SNP [dm6]	C	T	2.896e^-4	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_sna
2L	9416995	2L_9416995_SNP [dm3] 2L_9416995_SNP [dm6]	G	A	2.899e^-4	0.661	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19285262	2R_19285262_SNP [dm3] 2R_23397739_SNP [dm6]	T	G	2.901e^-4	0.661	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
3L	10632892	3L_10632892_SNP [dm3] 3L_10639792_SNP [dm6]	C	T	2.913e^-4	0.661	UTR_5_PRIME CG18628 DOWNSTREAM CG32066 & 1 other
2L	9027547	2L_9027547_SNP [dm3] 2L_9027547_SNP [dm6]	A	C	2.915e^-4	0.661	INTRON CG9582 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14152660	2R_14152660_SNP [dm3] 2R_18265155_SNP [dm6]	G	A	2.918e^-4	0.661	INTERGENIC
X	11350503	X_11350503_INS [dm3] X_11456470_INS [dm6]	A	ATGATGA	2.920e^-4	0.661
2R	13380839	2R_13380839_SNP [dm3] 2R_17493334_SNP [dm6]	C	T	2.921e^-4	0.661	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13766679	2R_13766679_SNP [dm3] 2R_17879174_SNP [dm6]	A	G	2.926e^-4	0.661	SYNONYMOUS_CODING CG30325 INTRON Elk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6617730	2L_6617730_SNP [dm3] 2L_6617730_SNP [dm6]	T	G	2.928e^-4	0.661	DOWNSTREAM CG11050 INTRON CG11320	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25357177	3R_25357177_DEL [dm3] 3R_29531455_DEL [dm6]	ACAACAA	A	2.932e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_sens
3L	3797288	3L_3797288_SNP [dm3] 3L_3797288_SNP [dm6]	A	T	2.935e^-4	0.661	INTRON CG32264
3L	11399156	3L_11399156_SNP [dm3] 3L_11406056_SNP [dm6]	T	A	2.948e^-4	0.661	EXON CR44363	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cnc
2L	11871760	2L_11871760_SNP [dm3] 2L_11871760_SNP [dm6]	A	T	2.956e^-4	0.661	INTRON Pde1c
3L	10092865	3L_10092865_SNP [dm3] 3L_10099765_SNP [dm6]	A	T	2.956e^-4	0.661	SYNONYMOUS_CODING CG42826 INTRON dpr6
3R	11176754	3R_11176754_SNP [dm3] 3R_15351032_SNP [dm6]	T	C	2.959e^-4	0.661	UPSTREAM CG5038 & 1 other DOWNSTREAM CG42726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26492589	3R_26492589_SNP [dm3] 3R_30666867_SNP [dm6]	A	T	2.964e^-4	0.661	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	10115329	2L_10115329_SNP [dm3] 2L_10115329_SNP [dm6]	T	C	2.975e^-4	0.661	INTRON CG44153 & 1 other
3L	17238168	3L_17238168_SNP [dm3] 3L_17245068_SNP [dm6]	A	C	2.975e^-4	0.661	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
X	11289440	X_11289440_SNP [dm3] X_11395407_SNP [dm6]	T	G	2.977e^-4	0.661	SYNONYMOUS_CODING dlg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7117937	2R_7117937_SNP [dm3] 2R_11230432_SNP [dm6]	C	A	2.977e^-4	0.661	INTRON metro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16727364	2L_16727364_SNP [dm3] 2L_16727364_SNP [dm6]	C	T	2.978e^-4	0.661	SYNONYMOUS_CODING VhaSFD DOWNSTREAM CR43671	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13769016	2R_13769016_SNP [dm3] 2R_17881511_SNP [dm6]	G	T	2.978e^-4	0.661	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
2L	4210061	2L_4210061_SNP [dm3] 2L_4210061_SNP [dm6]	C	T	2.981e^-4	0.661	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26817097	3R_26817097_SNP [dm3] 3R_30991375_SNP [dm6]	A	C	2.984e^-4	0.661	DOWNSTREAM CG31007 INTRON 5-HT7
3R	21482146	3R_21482146_SNP [dm3] 3R_25656424_SNP [dm6]	G	A	2.993e^-4	0.661	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5590261	2L_5590261_SNP [dm3] 2L_5590261_SNP [dm6]	G	A	3.000e^-4	0.661	INTERGENIC
3L	4317210	3L_4317210_SNP [dm3] 3L_4317210_SNP [dm6]	G	A	3.003e^-4	0.661	SYNONYMOUS_CODING Claspin
X	14217582	X_14217582_SNP [dm3] X_14323549_SNP [dm6]	A	G	3.003e^-4	0.661	INTRON dpr8
2L	11236917	2L_11236917_SNP [dm3] 2L_11236917_SNP [dm6]	A	T	3.004e^-4	0.661	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7587083	2R_7587083_SNP [dm3] 2R_11699578_SNP [dm6]	T	G	3.008e^-4	0.661	EXON Ir48a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10810253	2R_10810253_INS [dm3] 2R_14922748_INS [dm6]	A	AAAACGAACA	3.008e^-4	0.661	INTRON CG10249
3L	5252842	3L_5252842_SNP [dm3] 3L_5259742_SNP [dm6]	A	G	3.010e^-4	0.661	INTRON shep
3L	1370381	3L_1370381_SNP [dm3] 3L_1370381_SNP [dm6]	C	T	3.013e^-4	0.661	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12718677	3R_12718677_SNP [dm3] 3R_16892955_SNP [dm6]	A	G	3.024e^-4	0.661	UPSTREAM iab-8 INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26471353	3R_26471353_SNP [dm3] 3R_30645631_SNP [dm6]	A	C	3.028e^-4	0.661	DOWNSTREAM PH4alphaPV INTRON CG31013	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	7534976	3R_7534976_SNP [dm3] 3R_11709254_SNP [dm6]	A	G	3.030e^-4	0.661	INTERGENIC
3R	12922643	3R_12922643_SNP [dm3] 3R_17096921_SNP [dm6]	A	G	3.031e^-4	0.661	INTRON cher
3L	1959311	3L_1959311_SNP [dm3] 3L_1959311_SNP [dm6]	G	T	3.032e^-4	0.661	INTRON mv
2R	13946970	2R_13946970_SNP [dm3] 2R_18059465_SNP [dm6]	A	C	3.033e^-4	0.661	UPSTREAM CR45314 INTERGENIC
3L	17238518	3L_17238518_SNP [dm3] 3L_17245418_SNP [dm6]	A	C	3.033e^-4	0.661	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
2R	14838882	2R_14838882_SNP [dm3] 2R_18951377_SNP [dm6]	G	A	3.037e^-4	0.661	INTRON sano
2L	3367293	2L_3367293_SNP [dm3] 2L_3367293_SNP [dm6]	C	G	3.041e^-4	0.661	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	3.042e^-4	0.661	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21927652	2L_21927652_SNP [dm3] 2L_21927652_SNP [dm6]	G	T	3.042e^-4	0.661	INTERGENIC	transposable element FlyBase
3L	18379776	3L_18379776_SNP [dm3] 3L_18386676_SNP [dm6]	A	T	3.048e^-4	0.661	INTERGENIC
3R	4014324	3R_4014324_INS [dm3] 3R_8188602_INS [dm6]	A	ACATTTAAACTGAACAACAT...	3.051e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4136688	2L_4136688_SNP [dm3] 2L_4136688_SNP [dm6]	C	T	3.052e^-4	0.661	INTERGENIC
X	5850243	X_5850243_SNP [dm3] X_5956210_SNP [dm6]	T	G	3.053e^-4	0.661	INTRON CG6067
X	5850244	X_5850244_SNP [dm3] X_5956211_SNP [dm6]	T	G	3.053e^-4	0.661	INTRON CG6067
3L	4313227	3L_4313227_SNP [dm3] 3L_4313227_SNP [dm6]	A	C	3.054e^-4	0.661	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6973166	2R_6973166_SNP [dm3] 2R_11085661_SNP [dm6]	T	C	3.058e^-4	0.661	SYNONYMOUS_CODING CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15198282	2R_15198282_SNP [dm3] 2R_19310777_SNP [dm6]	T	C	3.061e^-4	0.661	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
X	6113352	X_6113352_SNP [dm3] X_6219319_SNP [dm6]	A	C	3.063e^-4	0.661	UTR_5_PRIME Btd UPSTREAM Efr
2R	1251602	2R_1251602_SNP [dm3] 2R_5364097_SNP [dm6]	G	T	3.063e^-4	0.661	UPSTREAM CG10417 INTRON CR42646	TF binding site BDTNP1_TFBS_dl
3R	19919366	3R_19919366_SNP [dm3] 3R_24093644_SNP [dm6]	G	T	3.075e^-4	0.661	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3R	8700551	3R_8700551_SNP [dm3] 3R_12874829_SNP [dm6]	A	T	3.084e^-4	0.661	INTERGENIC
3R	10179369	3R_10179369_SNP [dm3] 3R_14353647_SNP [dm6]	G	A	3.092e^-4	0.661	INTRON NK7.1
2L	10721027	2L_10721027_SNP [dm3] 2L_10721027_SNP [dm6]	C	T	3.098e^-4	0.661	INTERGENIC
3R	18651305	3R_18651305_SNP [dm3] 3R_22825583_SNP [dm6]	C	A	3.102e^-4	0.661	EXON CR44350
2R	12246289	2R_12246289_SNP [dm3] 2R_16358784_SNP [dm6]	T	A	3.105e^-4	0.661	UPSTREAM CG6262 DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	21901277	2L_21901277_SNP [dm3] 2L_21901277_SNP [dm6]	A	T	3.107e^-4	0.661	INTERGENIC
3R	26093716	3R_26093716_SNP [dm3] 3R_30267994_SNP [dm6]	G	T	3.110e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	12718738	3R_12718738_SNP [dm3] 3R_16893016_SNP [dm6]	A	T	3.118e^-4	0.661	UPSTREAM iab-8 INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9226183	3R_9226183_SNP [dm3] 3R_13400461_SNP [dm6]	T	A	3.124e^-4	0.661	INTRON CG9796
3L	4741075	3L_4741075_SNP [dm3] 3L_4741075_SNP [dm6]	G	C	3.125e^-4	0.661	INTRON RhoGEF64C
3R	14767230	3R_14767230_SNP [dm3] 3R_18941508_SNP [dm6]	A	G	3.125e^-4	0.661	INTRON CG42613
3L	4364447	3L_4364447_SNP [dm3] 3L_4364447_SNP [dm6]	G	A	3.128e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17235727	3R_17235727_SNP [dm3] 3R_21410005_SNP [dm6]	A	C	3.128e^-4	0.661	UTR_3_PRIME lbl DOWNSTREAM CheB93b
2R	9133310	2R_9133310_SNP [dm3] 2R_13245805_SNP [dm6]	A	G	3.132e^-4	0.661	UPSTREAM CR45278 & 1 other INTERGENIC
3L	5253042	3L_5253042_SNP [dm3] 3L_5259942_SNP [dm6]	A	G	3.133e^-4	0.661	INTRON shep
2L	10780072	2L_10780072_SNP [dm3] 2L_10780072_SNP [dm6]	T	A	3.133e^-4	0.661	INTRON CG31869
3L	10279950	3L_10279950_SNP [dm3] 3L_10286850_SNP [dm6]	C	A	3.138e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4364437	3L_4364437_SNP [dm3] 3L_4364437_SNP [dm6]	A	C	3.138e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1538937	2L_1538937_SNP [dm3] 2L_1538937_SNP [dm6]	C	T	3.139e^-4	0.661	INTERGENIC
2L	14003805	2L_14003805_SNP [dm3] 2L_14003805_SNP [dm6]	G	A	3.140e^-4	0.661	INTERGENIC
3R	17235729	3R_17235729_SNP [dm3] 3R_21410007_SNP [dm6]	T	C	3.141e^-4	0.661	UTR_3_PRIME lbl DOWNSTREAM CheB93b
3L	13084198	3L_13084198_SNP [dm3] 3L_13091098_SNP [dm6]	G	C	3.145e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	11003782	X_11003782_SNP [dm3] X_11109749_SNP [dm6]	A	T	3.152e^-4	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_sna
3L	7973598	3L_7973598_SNP [dm3] 3L_7980498_SNP [dm6]	G	C	3.165e^-4	0.661	UTR_5_PRIME nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	21748252	2L_21748252_SNP [dm3] 2L_21748252_SNP [dm6]	C	T	3.170e^-4	0.661	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1930284	3L_1930284_SNP [dm3] 3L_1930284_SNP [dm6]	G	A	3.171e^-4	0.661	INTRON Dbx
2R	6533935	2R_6533935_SNP [dm3] 2R_10646430_SNP [dm6]	G	A	3.174e^-4	0.661	SYNONYMOUS_CODING Elp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
X	11349829	X_11349829_SNP [dm3] X_11455796_SNP [dm6]	G	A	3.177e^-4	0.661	SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
3L	5251211	3L_5251211_SNP [dm3] 3L_5258111_SNP [dm6]	A	G	3.183e^-4	0.661	INTRON shep
2L	1575765	2L_1575765_SNP [dm3] 2L_1575765_SNP [dm6]	T	A	3.186e^-4	0.661	INTRON haf
2L	9322835	2L_9322835_SNP [dm3] 2L_9322835_SNP [dm6]	G	A	3.190e^-4	0.661	INTERGENIC
X	20720451	X_20720451_SNP [dm3] X_20849424_SNP [dm6]	C	T	3.190e^-4	0.661	INTRON shakB
3R	7307330	3R_7307330_DEL [dm3] 3R_11481608_DEL [dm6]	ACCCACAGC	A	3.199e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1538934	2L_1538934_SNP [dm3] 2L_1538934_SNP [dm6]	G	T	3.199e^-4	0.661	INTERGENIC
2L	8312191	2L_8312191_SNP [dm3] 2L_8312191_SNP [dm6]	G	A	3.202e^-4	0.661	UPSTREAM CG7810 INTRON CG7806
3R	17220839	3R_17220839_SNP [dm3] 3R_21395117_SNP [dm6]	C	T	3.204e^-4	0.661	INTERGENIC
3R	18806206	3R_18806206_SNP [dm3] 3R_22980484_SNP [dm6]	A	T	3.205e^-4	0.661	DOWNSTREAM Nha2 INTERGENIC
3R	18806212	3R_18806212_SNP [dm3] 3R_22980490_SNP [dm6]	A	T	3.205e^-4	0.661	DOWNSTREAM Nha2 INTERGENIC
3R	26524941	3R_26524941_INS [dm3] 3R_30699219_INS [dm6]	G	GA	3.207e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	21760062	2L_21760062_SNP [dm3] 2L_21760062_SNP [dm6]	G	T	3.209e^-4	0.661	INTRON CG1416
3L	18241075	3L_18241075_DEL [dm3] 3L_18247975_DEL [dm6]	AAAGGT	A	3.211e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5561165	2L_5561165_SNP [dm3] 2L_5561165_SNP [dm6]	G	C	3.212e^-4	0.661	NON_SYNONYMOUS_CODING GluRIIB
3R	12554539	3R_12554539_DEL [dm3] 3R_16728817_DEL [dm6]	AAC	T	3.214e^-4	0.661	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	12586581	2L_12586581_SNP [dm3] 2L_12586581_SNP [dm6]	T	C	3.216e^-4	0.661	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	11002263	X_11002263_DEL [dm3] X_11108230_DEL [dm6]	TA	T	3.220e^-4	0.661	UPSTREAM Hsp60 DOWNSTREAM CG42249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6518739	X_6518739_SNP [dm3] X_6624706_SNP [dm6]	C	G	3.221e^-4	0.661	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17716128	2R_17716128_SNP [dm3] 2R_21828623_SNP [dm6]	A	G	3.222e^-4	0.661	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
2L	8335535	2L_8335535_SNP [dm3] 2L_8335535_SNP [dm6]	T	C	3.227e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9358746	2R_9358746_SNP [dm3] 2R_13471241_SNP [dm6]	C	T	3.233e^-4	0.661	INTRON arr
3L	1929721	3L_1929721_SNP [dm3] 3L_1929721_SNP [dm6]	T	C	3.237e^-4	0.661	INTRON Dbx
2L	13264333	2L_13264333_SNP [dm3] 2L_13264333_SNP [dm6]	A	G	3.237e^-4	0.661	DOWNSTREAM CG31848 INTRON CG44085
3R	6554177	3R_6554177_SNP [dm3] 3R_10728455_SNP [dm6]	T	C	3.239e^-4	0.661	INTERGENIC
2L	12418465	2L_12418465_SNP [dm3] 2L_12418465_SNP [dm6]	C	T	3.247e^-4	0.661	INTRON vir-1
2L	9017029	2L_9017029_DEL [dm3] 2L_9017029_DEL [dm6]	TCATA	T	3.249e^-4	0.661	INTERGENIC
3R	9335546	3R_9335546_DEL [dm3] 3R_13509824_DEL [dm6]	AT	C	3.255e^-4	0.661	INTERGENIC
2R	1381061	2R_1381061_DEL [dm3] 2R_5493556_DEL [dm6]	ACAGCAAACGAA...	A	3.262e^-4	0.661	INTRON CG30440
X	8156062	X_8156062_DEL [dm3] X_8262029_DEL [dm6]	GCGGTGCTCTA...	G	3.265e^-4	0.661	INTRON CG1632
3L	4741074	3L_4741074_SNP [dm3] 3L_4741074_SNP [dm6]	C	G	3.266e^-4	0.661	INTRON RhoGEF64C
X	8020771	X_8020771_SNP [dm3] X_8126738_SNP [dm6]	T	C	3.267e^-4	0.661	SYNONYMOUS_CODING cyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	6238746	2L_6238746_SNP [dm3] 2L_6238746_SNP [dm6]	C	A	3.267e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	6519697	X_6519697_SNP [dm3] X_6625664_SNP [dm6]	A	G	3.270e^-4	0.661	INTRON pigs	TF binding site BDTNP1_TFBS_dl
2L	16498627	2L_16498627_SNP [dm3] 2L_16498627_SNP [dm6]	A	G	3.272e^-4	0.661	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6561892	2R_6561892_SNP [dm3] 2R_10674387_SNP [dm6]	C	T	3.275e^-4	0.661	INTRON stan	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11661441	X_11661441_SNP [dm3] X_11767408_SNP [dm6]	T	C	3.277e^-4	0.661	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2L	3575872	2L_3575872_SNP [dm3] 2L_3575872_SNP [dm6]	G	A	3.285e^-4	0.661	UPSTREAM CG43815 DOWNSTREAM CR43822 INTERGENIC
2R	7058890	2R_7058890_SNP [dm3] 2R_11171385_SNP [dm6]	T	A	3.285e^-4	0.661	INTRON shn & 1 other
3R	18806233	3R_18806233_SNP [dm3] 3R_22980511_SNP [dm6]	G	A	3.285e^-4	0.661	DOWNSTREAM Nha2 INTERGENIC
3R	9313367	3R_9313367_SNP [dm3] 3R_13487645_SNP [dm6]	C	A	3.290e^-4	0.661	INTERGENIC
X	3468280	X_3468280_SNP [dm3] X_3574247_SNP [dm6]	G	T	3.299e^-4	0.661	UPSTREAM AstA-R1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	6248972	X_6248972_SNP [dm3] X_6354939_SNP [dm6]	T	A	3.308e^-4	0.661	INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_Trl
2L	10787552	2L_10787552_SNP [dm3] 2L_10787552_SNP [dm6]	C	G	3.312e^-4	0.661	INTRON CG31869
X	12632389	X_12632389_SNP [dm3] X_12738356_SNP [dm6]	C	G	3.314e^-4	0.661	INTRON Smr	TF binding site BDTNP1_TFBS_dl
2L	17948552	2L_17948552_SNP [dm3] 2L_17948552_SNP [dm6]	T	C	3.324e^-4	0.661	EXON CR44398
3L	3797287	3L_3797287_SNP [dm3] 3L_3797287_SNP [dm6]	G	A	3.326e^-4	0.661	INTRON CG32264
2L	9754117	2L_9754117_SNP [dm3] 2L_9754117_SNP [dm6]	C	G	3.327e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11089485	2R_11089485_SNP [dm3] 2R_15201980_SNP [dm6]	T	G	3.334e^-4	0.661	SYNONYMOUS_CODING CG11807 UPSTREAM CG42391 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	798128	3L_798128_SNP [dm3] 3L_798128_SNP [dm6]	C	T	3.340e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11003771	X_11003771_SNP [dm3] X_11109738_SNP [dm6]	G	T	3.348e^-4	0.661	UPSTREAM Hsp60 INTRON Hsp60	TF binding site BDTNP1_TFBS_sna
2L	20044556	2L_20044556_DEL [dm3] 2L_20044556_DEL [dm6]	AACCA	A	3.351e^-4	0.661	INTRON sNPF
2L	20044563	2L_20044563_MNP [dm3] 2L_20044563_MNP [dm6]	TTTGCT	AAGAAA	3.351e^-4	0.661	INTRON sNPF
3R	22233658	3R_22233658_SNP [dm3] 3R_26407936_SNP [dm6]	C	T	3.352e^-4	0.661	INTERGENIC
3L	1624014	3L_1624014_SNP [dm3] 3L_1624014_SNP [dm6]	A	T	3.358e^-4	0.661	SYNONYMOUS_CODING GC DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6544151	2R_6544151_SNP [dm3] 2R_10656646_SNP [dm6]	C	T	3.359e^-4	0.661	DOWNSTREAM CR44452 INTERGENIC
2L	17714528	2L_17714528_SNP [dm3] 2L_17714528_SNP [dm6]	T	A	3.361e^-4	0.661	INTRON CadN
X	12364360	X_12364360_SNP [dm3] X_12470327_SNP [dm6]	T	C	3.365e^-4	0.661	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14047967	2R_14047967_SNP [dm3] 2R_18160462_SNP [dm6]	T	A	3.367e^-4	0.661	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	26174316	3R_26174316_SNP [dm3] 3R_30348594_SNP [dm6]	A	T	3.368e^-4	0.661	INTRON hdc
3R	10756665	3R_10756665_SNP [dm3] 3R_14930943_SNP [dm6]	T	C	3.369e^-4	0.661	INTERGENIC
2L	21927653	2L_21927653_SNP [dm3] 2L_21927653_SNP [dm6]	G	C	3.369e^-4	0.661	INTERGENIC	transposable element FlyBase
2L	5091486	2L_5091486_SNP [dm3] 2L_5091486_SNP [dm6]	T	C	3.375e^-4	0.661	INTRON pgant5
3R	22303353	3R_22303353_SNP [dm3] 3R_26477631_SNP [dm6]	G	T	3.378e^-4	0.661	INTRON plum	TF binding site mE1_TFBS_inv
2L	12168156	2L_12168156_SNP [dm3] 2L_12168156_SNP [dm6]	G	A	3.381e^-4	0.661	SYNONYMOUS_CODING CG31760
3L	7958890	3L_7958890_SNP [dm3] 3L_7965790_SNP [dm6]	A	G	3.387e^-4	0.661	INTERGENIC
2R	13946997	2R_13946997_SNP [dm3] 2R_18059492_SNP [dm6]	T	A	3.387e^-4	0.661	UPSTREAM CR45314 INTERGENIC
X	10182982	X_10182982_DEL [dm3] X_10288949_DEL [dm6]	AACACCACCACCA...	G	3.398e^-4	0.661	INTRON alpha-Man-I
3R	6645868	3R_6645868_SNP [dm3] 3R_10820146_SNP [dm6]	T	G	3.399e^-4	0.661	INTERGENIC
2L	10782258	2L_10782258_SNP [dm3] 2L_10782258_SNP [dm6]	G	C	3.399e^-4	0.661	INTRON CG31869
3R	18806205	3R_18806205_SNP [dm3] 3R_22980483_SNP [dm6]	G	T	3.399e^-4	0.661	DOWNSTREAM Nha2 INTERGENIC
3R	15447652	3R_15447652_SNP [dm3] 3R_19621930_SNP [dm6]	A	G	3.421e^-4	0.661	UPSTREAM CG6231 INTRON CG6231
2L	14039777	2L_14039777_SNP [dm3] 2L_14039777_SNP [dm6]	C	T	3.422e^-4	0.661	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	13508769	3R_13508769_SNP [dm3] 3R_17683047_SNP [dm6]	T	C	3.425e^-4	0.661	SYNONYMOUS_CODING CG7655 UPSTREAM alt DOWNSTREAM CG31251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	2944848	X_2944848_SNP [dm3] X_3050815_SNP [dm6]	G	A	3.426e^-4	0.661	INTRON kirre
2L	8651376	2L_8651376_SNP [dm3] 2L_8651376_SNP [dm6]	A	T	3.427e^-4	0.661	INTRON Sema-1a
2L	21752713	2L_21752713_SNP [dm3] 2L_21752713_SNP [dm6]	T	C	3.430e^-4	0.661	INTRON step	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	9897658	2L_9897658_INS [dm3] 2L_9897658_INS [dm6]	T	TTACTTTT	3.434e^-4	0.661	UPSTREAM RpS2 DOWNSTREAM Muc30E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7874071	3L_7874071_SNP [dm3] 3L_7880971_SNP [dm6]	G	A	3.436e^-4	0.661	INTRON CG32365
2R	6894387	2R_6894387_DEL [dm3] 2R_11006882_DEL [dm6]	CGATAGC	C	3.437e^-4	0.661	INTRON luna
X	19304122	X_19304122_INS [dm3] X_19410089_INS [dm6]	T	TA	3.442e^-4	0.661	INTRON kek5
2L	3876859	2L_3876859_SNP [dm3] 2L_3876859_SNP [dm6]	G	C	3.444e^-4	0.661	INTRON capu
3R	26238262	3R_26238262_SNP [dm3] 3R_30412540_SNP [dm6]	G	A	3.445e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21902804	X_21902804_SNP [dm3] X_22500968_SNP [dm6]	C	T	3.448e^-4	0.661	INTRON l_1_G0196
2R	14077958	2R_14077958_SNP [dm3] 2R_18190453_SNP [dm6]	T	C	3.450e^-4	0.661	DOWNSTREAM CG14500 INTRON CG33958
2R	12720167	2R_12720167_SNP [dm3] 2R_16832662_SNP [dm6]	G	C	3.453e^-4	0.661	EXON CR43650	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9293016	3R_9293016_SNP [dm3] 3R_13467294_SNP [dm6]	A	T	3.458e^-4	0.661	INTERGENIC
2R	13856052	2R_13856052_SNP [dm3] 2R_17968547_SNP [dm6]	C	G	3.471e^-4	0.661	INTERGENIC
X	20002394	X_20002394_SNP [dm3] X_20108361_SNP [dm6]	C	T	3.473e^-4	0.661	INTERGENIC
2L	10721404	2L_10721404_SNP [dm3] 2L_10721404_SNP [dm6]	C	T	3.474e^-4	0.661	INTERGENIC
2R	17658475	2R_17658475_SNP [dm3] 2R_21770970_SNP [dm6]	T	A	3.476e^-4	0.661	DOWNSTREAM CG30395 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4364478	3L_4364478_SNP [dm3] 3L_4364478_SNP [dm6]	A	C	3.477e^-4	0.661	UPSTREAM mRpS6 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9341846	3R_9341846_SNP [dm3] 3R_13516124_SNP [dm6]	G	A	3.485e^-4	0.661	INTERGENIC
3R	9598548	3R_9598548_SNP [dm3] 3R_13772826_SNP [dm6]	C	T	3.497e^-4	0.661	INTRON CG9297
2L	2708746	2L_2708746_SNP [dm3] 2L_2708746_SNP [dm6]	A	G	3.499e^-4	0.661	INTRON CG31690
2R	1342713	2R_1342713_INS [dm3] 2R_5455208_INS [dm6]	T	TAAGATTAAATTGTAGTTTG...	3.501e^-4	0.661	UTR_3_PRIME laccase2 DOWNSTREAM laccase2
3R	27249860	3R_27249860_SNP [dm3] 3R_31424138_SNP [dm6]	C	T	3.504e^-4	0.661	INTRON Gprk2
X	15849058	X_15849058_SNP [dm3] X_15955025_SNP [dm6]	T	C	3.504e^-4	0.661	INTRON mmd
3R	26695600	3R_26695600_SNP [dm3] 3R_30869878_SNP [dm6]	T	A	3.504e^-4	0.661	DOWNSTREAM Cpr100A INTERGENIC
3L	12146213	3L_12146213_SNP [dm3] 3L_12153113_SNP [dm6]	G	A	3.507e^-4	0.661	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3L	17615315	3L_17615315_SNP [dm3] 3L_17622215_SNP [dm6]	G	A	3.508e^-4	0.661	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	1133439	2R_1133439_DEL [dm3] 2R_5245934_DEL [dm6]	TG	T	3.508e^-4	0.661	INTRON Nipped-A	transposable element FlyBase
3L	3334417	3L_3334417_SNP [dm3] 3L_3334417_SNP [dm6]	G	A	3.510e^-4	0.661	SYNONYMOUS_CODING CG14969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12281684	3L_12281684_SNP [dm3] 3L_12288584_SNP [dm6]	T	A	3.524e^-4	0.661	DOWNSTREAM CR45658 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9897653	2L_9897653_DEL [dm3] 2L_9897653_DEL [dm6]	CAAAA	C	3.528e^-4	0.661	UPSTREAM RpS2 DOWNSTREAM Muc30E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3001803	2L_3001803_SNP [dm3] 2L_3001803_SNP [dm6]	A	C	3.531e^-4	0.661	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	2788676	2R_2788676_SNP [dm3] 2R_6901171_SNP [dm6]	C	A	3.537e^-4	0.661	INTRON CG30158
X	8333843	X_8333843_SNP [dm3] X_8439810_SNP [dm6]	C	A	3.542e^-4	0.661	INTRON CG1440	TF binding site mE1_TFBS_sens
3R	7690211	3R_7690211_SNP [dm3] 3R_11864489_SNP [dm6]	G	A	3.545e^-4	0.661	INTRON CG6959
X	7488603	X_7488603_SNP [dm3] X_7594570_SNP [dm6]	A	G	3.546e^-4	0.661	INTERGENIC	regulatory region REDfly_CRMs
2R	14048201	2R_14048201_SNP [dm3] 2R_18160696_SNP [dm6]	C	T	3.547e^-4	0.661	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	18965541	X_18965541_SNP [dm3] X_19071508_SNP [dm6]	G	C	3.548e^-4	0.661	INTERGENIC
2R	14152668	2R_14152668_SNP [dm3] 2R_18265163_SNP [dm6]	A	T	3.552e^-4	0.661	INTERGENIC
3R	19907414	3R_19907414_SNP [dm3] 3R_24081692_SNP [dm6]	T	G	3.555e^-4	0.661	INTRON 4EHP
3R	25016011	3R_25016011_SNP [dm3] 3R_29190289_SNP [dm6]	A	T	3.557e^-4	0.661	INTRON CG14509
3L	16716900	3L_16716900_SNP [dm3] 3L_16723800_SNP [dm6]	A	G	3.558e^-4	0.661	UTR_3_PRIME Dab DOWNSTREAM CG13026	TF binding site mE1_TFBS_cad
3L	748215	3L_748215_SNP [dm3] 3L_748215_SNP [dm6]	A	T	3.559e^-4	0.661	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	9126474	2R_9126474_SNP [dm3] 2R_13238969_SNP [dm6]	A	G	3.563e^-4	0.661	UPSTREAM GstE14 INTRON CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	3463587	2R_3463587_SNP [dm3] 2R_7576082_SNP [dm6]	C	T	3.568e^-4	0.661	SYNONYMOUS_CODING Vps13
3R	18449737	3R_18449737_SNP [dm3] 3R_22624015_SNP [dm6]	A	T	3.577e^-4	0.661	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	23255712	3R_23255712_SNP [dm3] 3R_27429990_SNP [dm6]	T	G	3.582e^-4	0.661	INTRON side
3R	26238174	3R_26238174_SNP [dm3] 3R_30412452_SNP [dm6]	G	A	3.584e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13795284	X_13795284_SNP [dm3] X_13901251_SNP [dm6]	A	C	3.584e^-4	0.661	INTRON mamo
3L	14503785	3L_14503785_SNP [dm3] 3L_14510685_SNP [dm6]	A	G	3.585e^-4	0.661	UPSTREAM bbg INTRON bbg
2R	6999467	2R_6999467_SNP [dm3] 2R_11111962_SNP [dm6]	C	T	3.588e^-4	0.661	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	2376438	3L_2376438_INS [dm3] 3L_2376438_INS [dm6]	A	AATAATAATAATAATAATAA...	3.591e^-4	0.661	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
3R	12919726	3R_12919726_SNP [dm3] 3R_17094004_SNP [dm6]	G	C	3.598e^-4	0.661	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11002147	X_11002147_SNP [dm3] X_11108114_SNP [dm6]	T	A	3.599e^-4	0.661	UTR_3_PRIME CG42249 UPSTREAM Hsp60	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1898675	3L_1898675_INS [dm3] 3L_1898675_INS [dm6]	A	ATA	3.602e^-4	0.661	INTRON CG1887	TF binding site mE1_TFBS_inv
3R	26732056	3R_26732056_SNP [dm3] 3R_30906334_SNP [dm6]	G	T	3.602e^-4	0.661	INTERGENIC
X	20720545	X_20720545_SNP [dm3] X_20849518_SNP [dm6]	T	A	3.605e^-4	0.661	INTRON shakB
2L	3259261	2L_3259261_SNP [dm3] 2L_3259261_SNP [dm6]	T	A	3.607e^-4	0.661	INTERGENIC
X	5850241	X_5850241_INS [dm3] X_5956208_INS [dm6]	G	GT	3.609e^-4	0.661	INTRON CG6067
2R	8247251	2R_8247251_SNP [dm3] 2R_12359746_SNP [dm6]	T	C	3.620e^-4	0.661	SYNONYMOUS_CODING CG30043 DOWNSTREAM CG30049	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3906045	3L_3906045_SNP [dm3] 3L_3906045_SNP [dm6]	T	C	3.622e^-4	0.661	SYNONYMOUS_CODING ida	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	10168267	3L_10168267_SNP [dm3] 3L_10175167_SNP [dm6]	T	G	3.624e^-4	0.661	INTRON dpr10
3R	22303339	3R_22303339_SNP [dm3] 3R_26477617_SNP [dm6]	A	T	3.629e^-4	0.661	INTRON plum	TF binding site mE1_TFBS_inv
3L	4669274	3L_4669274_SNP [dm3] 3L_4669274_SNP [dm6]	G	A	3.629e^-4	0.661	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21259395	X_21259395_SNP [dm3] X_21388368_SNP [dm6]	A	T	3.630e^-4	0.661	UPSTREAM Hlc & 1 other INTERGENIC
X	6944585	X_6944585_SNP [dm3] X_7050552_SNP [dm6]	G	C	3.633e^-4	0.661	DOWNSTREAM nullo INTRON CG12541
2R	6806450	2R_6806450_SNP [dm3] 2R_10918945_SNP [dm6]	C	G	3.636e^-4	0.661	INTERGENIC
X	11350132	X_11350132_SNP [dm3] X_11456099_SNP [dm6]	G	C	3.636e^-4	0.661	SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2L	13460171	2L_13460171_SNP [dm3] 2L_13460171_SNP [dm6]	G	A	3.639e^-4	0.661	UTR_3_PRIME CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
2L	9344683	2L_9344683_SNP [dm3] 2L_9344683_SNP [dm6]	G	A	3.640e^-4	0.661	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
3R	9158314	3R_9158314_SNP [dm3] 3R_13332592_SNP [dm6]	T	A	3.640e^-4	0.661	UTR_5_PRIME PK2-R2 INTRON PK2-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15718532	3L_15718532_SNP [dm3] 3L_15725432_SNP [dm6]	T	G	3.642e^-4	0.661	INTRON comm
3R	25851170	3R_25851170_SNP [dm3] 3R_30025448_SNP [dm6]	A	T	3.644e^-4	0.661	INTRON Axn
3L	10503325	3L_10503325_SNP [dm3] 3L_10510225_SNP [dm6]	T	C	3.663e^-4	0.661	INTRON A2bp1
X	13959056	X_13959056_SNP [dm3] X_14065023_SNP [dm6]	A	T	3.665e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26238173	3R_26238173_SNP [dm3] 3R_30412451_SNP [dm6]	T	C	3.667e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

TotalVariants_3L phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results