DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.024e^-23)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	<

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	25.3783	3.0845e-06
In_2R_NS	28.2369	7.3865e-07

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3790 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19496052	X_19496052_INS [dm3] X_19602019_INS [dm6]	T	TTT	6.904e^-9	0.013	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	4134760	3R_4134760_SNP [dm3] 3R_8309038_SNP [dm6]	A	G	8.354e^-7	0.235	SYNONYMOUS_CODING CG11693 UPSTREAM mir-4918 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	17619907	2L_17619907_SNP [dm3] 2L_17619907_SNP [dm6]	C	T	8.529e^-7	0.235	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14846877	2L_14846877_SNP [dm3] 2L_14846877_SNP [dm6]	T	C	8.970e^-7	0.235	NON_SYNONYMOUS_CODING CG15279 INTRON CG15279
2L	19715057	2L_19715057_DEL [dm3] 2L_19715057_DEL [dm6]	CACCGGGC	C	1.034e^-6	0.235	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	16762358	2R_16762358_SNP [dm3] 2R_20874853_SNP [dm6]	C	T	1.183e^-6	0.235	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
3R	22520225	3R_22520225_INS [dm3] 3R_26694503_INS [dm6]	G	GTTGG	1.191e^-6	0.235	UPSTREAM TwdlQ INTERGENIC
2L	21064263	2L_21064263_SNP [dm3] 2L_21064263_SNP [dm6]	T	C	1.343e^-6	0.235	INTRON CG9265	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	3405028	2L_3405028_SNP [dm3] 2L_3405028_SNP [dm6]	A	G	1.346e^-6	0.235	UTR_3_PRIME pgant2
3R	25222566	3R_25222566_SNP [dm3] 3R_29396844_SNP [dm6]	C	T	1.414e^-6	0.235	INTRON Ptp99A
2R	7280573	2R_7280573_DEL [dm3] 2R_11393068_DEL [dm6]	CAAGTGATC	C	1.505e^-6	0.235	INTRON sprt
3R	1206780	3R_1206780_DEL [dm3] 3R_5381058_DEL [dm6]	AA	A	2.053e^-6	0.235	INTRON kkv
2L	12289242	2L_12289242_SNP [dm3] 2L_12289242_SNP [dm6]	T	C	2.065e^-6	0.235	UTR_5_PRIME aret INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12279048	2L_12279048_SNP [dm3] 2L_12279048_SNP [dm6]	G	A	2.197e^-6	0.235	INTRON aret
2L	13975947	2L_13975947_DEL [dm3] 2L_13975947_DEL [dm6]	ATAA	A	2.225e^-6	0.235	INTRON NimC1
3R	25222382	3R_25222382_DEL [dm3] 3R_29396660_DEL [dm6]	AG	A	2.295e^-6	0.235	INTRON Ptp99A
2L	21050757	2L_21050757_DEL [dm3] 2L_21050757_DEL [dm6]	TTATAGAT	T	2.698e^-6	0.235	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25222390	3R_25222390_SNP [dm3] 3R_29396668_SNP [dm6]	A	T	2.703e^-6	0.235	INTRON Ptp99A
X	4472554	X_4472554_INS [dm3] X_4578521_INS [dm6]	C	CA	2.740e^-6	0.235	INTRON CR32773	TF binding site BDTNP1_TFBS_da
3R	26709662	3R_26709662_SNP [dm3] 3R_30883940_SNP [dm6]	A	G	2.847e^-6	0.235	UPSTREAM CG15547 INTRON Sap-r	TF binding site mE1_TFBS_cad
3R	25222387	3R_25222387_INS [dm3] 3R_29396665_INS [dm6]	GC	AGATA	2.879e^-6	0.235	INTRON Ptp99A
2L	18587275	2L_18587275_SNP [dm3] 2L_18587275_SNP [dm6]	T	G	2.910e^-6	0.235	INTRON Pde11
2L	4819399	2L_4819399_DEL [dm3] 2L_4819399_DEL [dm6]	AA	A	3.083e^-6	0.235	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15241503	3R_15241503_SNP [dm3] 3R_19415781_SNP [dm6]	T	C	3.170e^-6	0.235	UTR_5_PRIME CG31221
2L	5074858	2L_5074858_DEL [dm3] 2L_5074858_DEL [dm6]	AA	A	3.276e^-6	0.235	INTRON pgant5
3R	25222291	3R_25222291_SNP [dm3] 3R_29396569_SNP [dm6]	C	A	3.311e^-6	0.235	INTRON Ptp99A
3R	25222391	3R_25222391_SNP [dm3] 3R_29396669_SNP [dm6]	C	G	3.376e^-6	0.235	INTRON Ptp99A
X	16519235	X_16519235_DEL [dm3] X_16625202_DEL [dm6]	AA	A	3.925e^-6	0.257	UTR_3_PRIME Rok INTRON Rok
2L	21944642	2L_21944642_INS [dm3] 2L_21944642_INS [dm6]	C	CTTAAGCT	4.114e^-6	0.257	INTERGENIC
2L	21944643	2L_21944643_DEL [dm3] 2L_21944643_DEL [dm6]	AC	A	4.114e^-6	0.257	INTERGENIC
2L	12209977	2L_12209977_SNP [dm3] 2L_12209977_SNP [dm6]	G	C	4.418e^-6	0.263	UTR_3_PRIME CG31759 INTRON aret
2R	16707647	2R_16707647_DEL [dm3] 2R_20820142_DEL [dm6]	ACGCGCACCATA...	A	4.983e^-6	0.263	INTERGENIC
2L	12552342	2L_12552342_SNP [dm3] 2L_12552342_SNP [dm6]	T	A	5.052e^-6	0.263	INTERGENIC
2L	8854866	2L_8854866_SNP [dm3] 2L_8854866_SNP [dm6]	A	C	5.117e^-6	0.263	INTERGENIC
2L	19004441	2L_19004441_SNP [dm3] 2L_19004441_SNP [dm6]	T	A	5.144e^-6	0.263	INTRON CG31793	TF binding site mE1_TFBS_chinmo
2L	4059197	2L_4059197_SNP [dm3] 2L_4059197_SNP [dm6]	C	T	5.326e^-6	0.263	INTRON ed
3R	26710866	3R_26710866_SNP [dm3] 3R_30885144_SNP [dm6]	G	C	5.410e^-6	0.263	SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8854896	2L_8854896_INS [dm3] 2L_8854896_INS [dm6]	A	CCCCAACTTAT...	5.423e^-6	0.263	INTERGENIC
2L	4679653	2L_4679653_SNP [dm3] 2L_4679653_SNP [dm6]	G	A	5.471e^-6	0.263	INTERGENIC
2R	19616121	2R_19616121_DEL [dm3] 2R_23728598_DEL [dm6]	GG	A	5.676e^-6	0.266	INTRON Sesn
3R	20661039	3R_20661039_SNP [dm3] 3R_24835317_SNP [dm6]	T	C	5.930e^-6	0.271	UPSTREAM CR45216 & 1 other INTRON sosie	TF binding site BDTNP1_TFBS_dl
3R	13270270	3R_13270270_DEL [dm3] 3R_17444548_DEL [dm6]	TGT	T	6.073e^-6	0.271	INTRON CG5873
2L	19806150	2L_19806150_SNP [dm3] 2L_19806150_SNP [dm6]	A	G	6.804e^-6	0.297	INTRON sick
2L	4820028	2L_4820028_DEL [dm3] 2L_4820028_DEL [dm6]	CATTGTC	C	7.416e^-6	0.302	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4679586	2L_4679586_SNP [dm3] 2L_4679586_SNP [dm6]	G	C	7.493e^-6	0.302	INTERGENIC
2L	12210043	2L_12210043_DEL [dm3] 2L_12210043_DEL [dm6]	AATTCG	A	7.495e^-6	0.302	UTR_3_PRIME CG31759 DOWNSTREAM CG31759 INTRON aret
2R	16762359	2R_16762359_SNP [dm3] 2R_20874854_SNP [dm6]	C	T	7.627e^-6	0.302	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
2L	21933009	2L_21933009_DEL [dm3] 2L_21933009_DEL [dm6]	CC	C	7.719e^-6	0.302	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17809045	2R_17809045_SNP [dm3] 2R_21921540_SNP [dm6]	G	A	8.084e^-6	0.303	UTR_5_PRIME Fili	TF binding site mE1_TFBS_inv
3L	975783	3L_975783_SNP [dm3] 3L_975783_SNP [dm6]	A	G	8.158e^-6	0.303	INTRON Glut1
2R	19358438	2R_19358438_INS [dm3] 2R_23470915_INS [dm6]	T	TAGAT	8.237e^-6	0.303	INTRON CG43795 & 1 other
3R	19750711	3R_19750711_INS [dm3] 3R_23924989_INS [dm6]	C	CC	8.613e^-6	0.309	DOWNSTREAM CG31141 INTRON Ndc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19011676	2L_19011676_INS [dm3] 2L_19011676_INS [dm6]	T	TT	8.827e^-6	0.309	UPSTREAM CR45292 DOWNSTREAM robl37BC INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9629705	3R_9629705_DEL [dm3] 3R_13803983_DEL [dm6]	TAAATCTACCATTATCACTA...	T	8.885e^-6	0.309	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4679336	2L_4679336_SNP [dm3] 2L_4679336_SNP [dm6]	A	G	9.133e^-6	0.311	INTERGENIC
2R	17998499	2R_17998499_SNP [dm3] 2R_22110994_SNP [dm6]	C	G	9.291e^-6	0.311	INTRON Vrp1	TF binding site mE1_TFBS_cad
3L	12107226	3L_12107226_SNP [dm3] 3L_12114126_SNP [dm6]	T	A	1.009e^-5	0.319	INTERGENIC
3R	22741710	3R_22741710_SNP [dm3] 3R_26915988_SNP [dm6]	C	T	1.023e^-5	0.319	INTRON sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	1.028e^-5	0.319	INTRON Doa
3R	26709682	3R_26709682_SNP [dm3] 3R_30883960_SNP [dm6]	T	A	1.034e^-5	0.319	UPSTREAM CG15547 INTRON Sap-r	TF binding site mE1_TFBS_cad
2R	1329977	2R_1329977_SNP [dm3] 2R_5442472_SNP [dm6]	T	A	1.045e^-5	0.319	INTRON laccase2	transposable element FlyBase
2L	12552355	2L_12552355_SNP [dm3] 2L_12552355_SNP [dm6]	T	C	1.061e^-5	0.319	INTERGENIC
X	12624080	X_12624080_DEL [dm3] X_12730047_DEL [dm6]	AA	A	1.081e^-5	0.319	INTRON Smr & 1 other	TF binding site mE1_TFBS_GATAe
2L	3217742	2L_3217742_DEL [dm3] 2L_3217742_DEL [dm6]	TA	T	1.088e^-5	0.319	INTERGENIC
2L	1711319	2L_1711319_SNP [dm3] 2L_1711319_SNP [dm6]	T	A	1.130e^-5	0.325	UTR_3_PRIME mRpL48 & 1 other UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	650344	2L_650344_DEL [dm3] 2L_650344_DEL [dm6]	TT	T	1.150e^-5	0.325	INTRON ds
3R	25979460	3R_25979460_INS [dm3] 3R_30153738_INS [dm6]	A	AATTGATGGTA...	1.186e^-5	0.325	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	1127765	2R_1127765_DEL [dm3] 2R_5240260_DEL [dm6]	TGTTTCGATCTAATGGGGAG...	T	1.201e^-5	0.325	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl
2R	8268259	2R_8268259_DEL [dm3] 2R_12380754_DEL [dm6]	ATC	A	1.201e^-5	0.325	UPSTREAM CG13155 INTERGENIC
2L	7898797	2L_7898797_INS [dm3] 2L_7898797_INS [dm6]	T	TAT	1.219e^-5	0.325	INTRON Snoo	TF binding site mE1_TFBS_cad
2L	20960756	2L_20960756_INS [dm3] 2L_20960756_INS [dm6]	C	CAGTGC	1.246e^-5	0.325	INTERGENIC
2L	12552322	2L_12552322_SNP [dm3] 2L_12552322_SNP [dm6]	C	T	1.292e^-5	0.325	INTERGENIC
2R	18122805	2R_18122805_SNP [dm3] 2R_22235300_SNP [dm6]	G	T	1.305e^-5	0.325	DOWNSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3217451	2L_3217451_SNP [dm3] 2L_3217451_SNP [dm6]	G	C	1.306e^-5	0.325	INTERGENIC
2L	12309657	2L_12309657_SNP [dm3] 2L_12309657_SNP [dm6]	G	T	1.309e^-5	0.325	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14675527	3L_14675527_DEL [dm3] 3L_14682427_DEL [dm6]	ATTTTTCA	A	1.316e^-5	0.325	INTRON ome
2L	12552395	2L_12552395_SNP [dm3] 2L_12552395_SNP [dm6]	G	C	1.366e^-5	0.333	INTERGENIC
2L	12552359	2L_12552359_SNP [dm3] 2L_12552359_SNP [dm6]	G	A	1.402e^-5	0.333	INTERGENIC
2L	13108034	2L_13108034_SNP [dm3] 2L_13108034_SNP [dm6]	T	A	1.442e^-5	0.333	SYNONYMOUS_CODING CG5142	TF binding site mE1_TFBS_chinmo
3L	12336855	3L_12336855_SNP [dm3] 3L_12343755_SNP [dm6]	A	G	1.445e^-5	0.333	INTRON CrzR
3L	21861112	3L_21861112_SNP [dm3] 3L_21868012_SNP [dm6]	A	C	1.500e^-5	0.333	INTRON mub	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21291021	2L_21291021_SNP [dm3] 2L_21291021_SNP [dm6]	T	C	1.546e^-5	0.333	SYNONYMOUS_CODING Gr39a UPSTREAM Gr39a INTRON Mio	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13807712	3R_13807712_INS [dm3] 3R_17981990_INS [dm6]	C	CC	1.560e^-5	0.333	INTRON cpo
3L	11652581	3L_11652581_SNP [dm3] 3L_11659481_SNP [dm6]	G	A	1.571e^-5	0.333	INTRON CG32085
3L	3867643	3L_3867643_SNP [dm3] 3L_3867643_SNP [dm6]	G	C	1.597e^-5	0.333	INTERGENIC
2L	21935017	2L_21935017_SNP [dm3] 2L_21935017_SNP [dm6]	A	C	1.600e^-5	0.333	INTERGENIC
3R	25496952	3R_25496952_SNP [dm3] 3R_29671230_SNP [dm6]	T	C	1.669e^-5	0.333	UTR_3_PRIME ppk30 UPSTREAM Obp99a	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18284264	2R_18284264_SNP [dm3] 2R_22396759_SNP [dm6]	A	G	1.679e^-5	0.333	INTRON babos	TF binding site BDTNP1_TFBS_dl
X	7997438	X_7997438_DEL [dm3] X_8103405_DEL [dm6]	CTTCGCC	C	1.700e^-5	0.333	UTR_3_PRIME Gclc
2L	12289447	2L_12289447_SNP [dm3] 2L_12289447_SNP [dm6]	T	G	1.731e^-5	0.333	INTRON aret
2L	2625695	2L_2625695_SNP [dm3] 2L_2625695_SNP [dm6]	C	A	1.741e^-5	0.333	EXON CR45705
2R	18127876	2R_18127876_SNP [dm3] 2R_22240371_SNP [dm6]	G	A	1.783e^-5	0.333	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16780106	2R_16780106_SNP [dm3] 2R_20892601_SNP [dm6]	C	G	1.790e^-5	0.333	INTRON otp
2L	16877705	2L_16877705_SNP [dm3] 2L_16877705_SNP [dm6]	C	T	1.887e^-5	0.333	DOWNSTREAM CG32832 EXON CR31781	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6779679	2L_6779679_INS [dm3] 2L_6779679_INS [dm6]	C	TCG	1.890e^-5	0.333	INTRON nrv1
2L	12210129	2L_12210129_SNP [dm3] 2L_12210129_SNP [dm6]	T	G	1.930e^-5	0.333	DOWNSTREAM CG31759 INTRON aret
X	16679364	X_16679364_DEL [dm3] X_16785331_DEL [dm6]	CGGATGTTTCTGAACGCAAA...	C	1.937e^-5	0.333	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
2L	2443910	2L_2443910_DEL [dm3] 2L_2443910_DEL [dm6]	TATAAATGCAAGTGA...	T	1.939e^-5	0.333	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6631112	2L_6631112_SNP [dm3] 2L_6631112_SNP [dm6]	G	A	1.944e^-5	0.333	INTRON Oatp26F
X	7293956	X_7293956_DEL [dm3] X_7399923_DEL [dm6]	TTTT	G	2.001e^-5	0.333	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sbb
3R	12605734	3R_12605734_SNP [dm3] 3R_16780012_SNP [dm6]	T	C	2.005e^-5	0.333	INTERGENIC
2R	13163427	2R_13163427_SNP [dm3] 2R_17275922_SNP [dm6]	G	A	2.039e^-5	0.333	SYNONYMOUS_CODING mbl	TF binding site mE1_TFBS_HSA
2R	6820388	2R_6820388_DEL [dm3] 2R_10932883_DEL [dm6]	TACAAAAACTTTAAGTCGTA...	T	2.055e^-5	0.333	INTERGENIC
3L	19563552	3L_19563552_SNP [dm3] 3L_19570452_SNP [dm6]	C	A	2.072e^-5	0.333	INTRON Shal	TF binding site mE1_TFBS_cad
3R	27235324	3R_27235324_DEL [dm3] 3R_31409602_DEL [dm6]	TAAACGTATTT...	T	2.086e^-5	0.333	INTRON Gprk2
2L	4712976	2L_4712976_INS [dm3] 2L_4712976_INS [dm6]	G	CA	2.102e^-5	0.333	INTRON CG34351
2L	17600723	2L_17600723_DEL [dm3] 2L_17600723_DEL [dm6]	GAATGTCG	G	2.114e^-5	0.333	INTRON Sytalpha
2L	3786951	2L_3786951_SNP [dm3] 2L_3786951_SNP [dm6]	G	A	2.119e^-5	0.333	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	18285233	2R_18285233_SNP [dm3] 2R_22397728_SNP [dm6]	G	C	2.123e^-5	0.333	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9788465	3R_9788465_SNP [dm3] 3R_13962743_SNP [dm6]	T	C	2.167e^-5	0.333	NON_SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_chinmo
2L	4500661	2L_4500661_SNP [dm3] 2L_4500661_SNP [dm6]	C	T	2.220e^-5	0.333	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15489993	3R_15489993_SNP [dm3] 3R_19664271_SNP [dm6]	C	A	2.224e^-5	0.333	UPSTREAM CG7432 DOWNSTREAM ort INTERGENIC
3L	5288936	3L_5288936_DEL [dm3] 3L_5295836_DEL [dm6]	TA	G	2.229e^-5	0.333	INTERGENIC
2R	1126939	2R_1126939_INS [dm3] 2R_5239434_INS [dm6]	T	TTCGGTTCGGTTTTCGGTTC...	2.240e^-5	0.333	INTRON Nipped-A	transposable element FlyBase
3L	17023818	3L_17023818_SNP [dm3] 3L_17030718_SNP [dm6]	G	T	2.259e^-5	0.333	SYNONYMOUS_CODING Ilp8 DOWNSTREAM CG7730
2L	20750390	2L_20750390_DEL [dm3] 2L_20750390_DEL [dm6]	ACAA	A	2.306e^-5	0.333	UTR_3_PRIME Fs_2_Ket DOWNSTREAM CG9319
3R	15241640	3R_15241640_SNP [dm3] 3R_19415918_SNP [dm6]	C	T	2.318e^-5	0.333	START_GAINED CG31221 UTR_5_PRIME CG31221
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	2.350e^-5	0.333	SYNONYMOUS_CODING CG14857
X	14507334	X_14507334_DEL [dm3] X_14613301_DEL [dm6]	TT	G	2.359e^-5	0.333	INTRON NetA
X	20933703	X_20933703_SNP [dm3] X_21062676_SNP [dm6]	T	A	2.373e^-5	0.333	UTR_3_PRIME CG32512 INTRON bves
3L	11652526	3L_11652526_SNP [dm3] 3L_11659426_SNP [dm6]	C	T	2.391e^-5	0.333	INTRON CG32085
3R	26820751	3R_26820751_SNP [dm3] 3R_30995029_SNP [dm6]	C	A	2.394e^-5	0.333	INTRON 5-HT7
3R	848071	3R_848071_INS [dm3] 3R_5022349_INS [dm6]	T	TTT	2.411e^-5	0.333	DOWNSTREAM CR45585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26709645	3R_26709645_SNP [dm3] 3R_30883923_SNP [dm6]	G	A	2.417e^-5	0.333	UPSTREAM CG15547 INTRON Sap-r	TF binding site mE1_TFBS_cad
2L	5022529	2L_5022529_SNP [dm3] 2L_5022529_SNP [dm6]	T	C	2.443e^-5	0.333	INTRON vkg
X	8016611	X_8016611_SNP [dm3] X_8122578_SNP [dm6]	T	A	2.464e^-5	0.333	INTRON cyr
X	16566596	X_16566596_INS [dm3] X_16672563_INS [dm6]	T	TATACATAT	2.473e^-5	0.333	INTRON CG13012
2L	21936792	2L_21936792_SNP [dm3] 2L_21936792_SNP [dm6]	G	T	2.486e^-5	0.333	INTERGENIC
2R	18133151	2R_18133151_SNP [dm3] 2R_22245646_SNP [dm6]	G	C	2.492e^-5	0.333	INTRON dve
2L	2827074	2L_2827074_SNP [dm3] 2L_2827074_SNP [dm6]	A	G	2.494e^-5	0.333	INTRON Duox
2L	4678870	2L_4678870_SNP [dm3] 2L_4678870_SNP [dm6]	T	A	2.510e^-5	0.333	INTERGENIC
2L	4679469	2L_4679469_SNP [dm3] 2L_4679469_SNP [dm6]	T	A	2.534e^-5	0.333	INTERGENIC
2R	17998597	2R_17998597_SNP [dm3] 2R_22111092_SNP [dm6]	C	T	2.554e^-5	0.333	INTRON Vrp1
2R	20367528	2R_20367528_DEL [dm3] 2R_24480005_DEL [dm6]	TCTCTCATCT	T	2.566e^-5	0.333	INTRON CG13579
3R	19465071	3R_19465071_SNP [dm3] 3R_23639349_SNP [dm6]	T	A	2.583e^-5	0.333	INTRON CG31145	TF binding site mE1_TFBS_inv
2R	10499046	2R_10499046_DEL [dm3] 2R_14611541_DEL [dm6]	AA	A	2.596e^-5	0.333	INTRON Su_var_2-HP2
2R	5664884	2R_5664884_DEL [dm3] 2R_9777379_DEL [dm6]	GCCCAGAACTCAG...	G	2.624e^-5	0.333	INTRON CG1688
2R	4500500	2R_4500500_SNP [dm3] 2R_8612995_SNP [dm6]	T	C	2.669e^-5	0.333	DOWNSTREAM rgr INTRON CG8642	TF binding site mE1_TFBS_cad
2R	16590166	2R_16590166_SNP [dm3] 2R_20702661_SNP [dm6]	G	A	2.676e^-5	0.333	INTRON dpr
2R	18524741	2R_18524741_INS [dm3] 2R_22637236_INS [dm6]	T	TAT	2.689e^-5	0.333	UPSTREAM bonsai INTRON Cdk9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12716697	X_12716697_SNP [dm3] X_12822664_SNP [dm6]	T	C	2.722e^-5	0.333	INTRON Pde9	TF binding site mE1_TFBS_HSA
3L	1602621	3L_1602621_SNP [dm3] 3L_1602621_SNP [dm6]	G	T	2.722e^-5	0.333	UTR_5_PRIME CG12104 UPSTREAM CG33791 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	2921056	2L_2921056_DEL [dm3] 2L_2921056_DEL [dm6]	CGGAGT	C	2.746e^-5	0.333	INTRON lilli
2L	19003351	2L_19003351_DEL [dm3] 2L_19003351_DEL [dm6]	GGGCATTCG	G	2.752e^-5	0.333	UPSTREAM CG31793 DOWNSTREAM CG31792 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19465064	3R_19465064_SNP [dm3] 3R_23639342_SNP [dm6]	A	G	2.759e^-5	0.333	INTRON CG31145	TF binding site mE1_TFBS_inv
2L	12195981	2L_12195981_SNP [dm3] 2L_12195981_SNP [dm6]	G	A	2.762e^-5	0.333	INTRON aret
3R	26707055	3R_26707055_SNP [dm3] 3R_30881333_SNP [dm6]	T	A	2.768e^-5	0.333	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17852769	3R_17852769_SNP [dm3] 3R_22027047_SNP [dm6]	G	T	2.779e^-5	0.333	UTR_5_PRIME Cchl UPSTREAM ND42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12552334	2L_12552334_SNP [dm3] 2L_12552334_SNP [dm6]	A	C	2.789e^-5	0.333	INTERGENIC
3R	26709201	3R_26709201_SNP [dm3] 3R_30883479_SNP [dm6]	G	T	2.807e^-5	0.333	UTR_5_PRIME CG15547 UTR_3_PRIME Sap-r
3R	15481754	3R_15481754_DEL [dm3] 3R_19656032_DEL [dm6]	TT	T	2.808e^-5	0.333	INTRON CG6184	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25772483	3R_25772483_SNP [dm3] 3R_29946761_SNP [dm6]	G	A	2.856e^-5	0.333	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
2L	2781670	2L_2781670_DEL [dm3] 2L_2781670_DEL [dm6]	ACAATA	A	2.866e^-5	0.333	UTR_3_PRIME Syt1
2L	12126417	2L_12126417_SNP [dm3] 2L_12126417_SNP [dm6]	G	T	2.884e^-5	0.333	SYNONYMOUS_CODING CG17211
3R	16242189	3R_16242189_INS [dm3] 3R_20416467_INS [dm6]	C	CG	2.902e^-5	0.333	INTRON Gfrl
3L	11654564	3L_11654564_SNP [dm3] 3L_11661464_SNP [dm6]	A	C	2.922e^-5	0.333	INTRON CG32085
2R	18286755	2R_18286755_SNP [dm3] 2R_22399250_SNP [dm6]	C	T	2.927e^-5	0.333	INTRON babos	TF binding site BDTNP1_TFBS_dl
2L	3233405	2L_3233405_SNP [dm3] 2L_3233405_SNP [dm6]	C	G	2.927e^-5	0.333	INTERGENIC
3R	23923437	3R_23923437_DEL [dm3] 3R_28097715_DEL [dm6]	AGTGCAGTCGAGTGGCACAG...	TGAGTGCAGTCG...	2.967e^-5	0.333	INTERGENIC
3R	8262805	3R_8262805_SNP [dm3] 3R_12437083_SNP [dm6]	T	A	2.974e^-5	0.333	DOWNSTREAM CG17207 INTRON Desat2
3L	6293706	3L_6293706_INS [dm3] 3L_6300606_INS [dm6]	T	TAG	2.980e^-5	0.333	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10427278	2L_10427278_SNP [dm3] 2L_10427278_SNP [dm6]	G	C	3.006e^-5	0.333	SYNONYMOUS_CODING KdelR UPSTREAM SmB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12107227	3L_12107227_SNP [dm3] 3L_12114127_SNP [dm6]	G	A	3.030e^-5	0.333	INTERGENIC
2R	18133620	2R_18133620_SNP [dm3] 2R_22246115_SNP [dm6]	A	T	3.059e^-5	0.333	INTRON dve
3R	20660826	3R_20660826_SNP [dm3] 3R_24835104_SNP [dm6]	C	A	3.081e^-5	0.333	UPSTREAM CR45216 & 1 other INTRON sosie
3L	18329276	3L_18329276_SNP [dm3] 3L_18336176_SNP [dm6]	T	A	3.102e^-5	0.333	INTERGENIC	TF binding site mE1_TFBS_sens
2L	7778770	2L_7778770_DEL [dm3] 2L_7778770_DEL [dm6]	ATGAGATTAA	GG	3.106e^-5	0.333	UPSTREAM CG7179 INTERGENIC
2R	18133354	2R_18133354_SNP [dm3] 2R_22245849_SNP [dm6]	G	C	3.109e^-5	0.333	INTRON dve
2L	12277245	2L_12277245_SNP [dm3] 2L_12277245_SNP [dm6]	G	A	3.126e^-5	0.333	INTRON aret
3L	11652607	3L_11652607_SNP [dm3] 3L_11659507_SNP [dm6]	C	G	3.136e^-5	0.333	INTRON CG32085
2L	22127231	2L_22127231_SNP [dm3] 2L_22127231_SNP [dm6]	G	A	3.155e^-5	0.333	UTR_3_PRIME CycK DOWNSTREAM CG3651
2R	18341642	2R_18341642_DEL [dm3] 2R_22454137_DEL [dm6]	GGAG	G	3.168e^-5	0.333	UPSTREAM CG10384 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18285092	2R_18285092_SNP [dm3] 2R_22397587_SNP [dm6]	A	C	3.177e^-5	0.333	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13211186	3L_13211186_SNP [dm3] 3L_13218086_SNP [dm6]	C	A	3.181e^-5	0.333	DOWNSTREAM CR45098 & 1 other INTERGENIC
3L	7368248	3L_7368248_INS [dm3] 3L_7375148_INS [dm6]	T	TT	3.188e^-5	0.333	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18000176	2R_18000176_DEL [dm3] 2R_22112671_DEL [dm6]	GCCTCAAG	T	3.191e^-5	0.333	UPSTREAM CG30280 INTRON Vrp1
2L	12552337	2L_12552337_INS [dm3] 2L_12552337_INS [dm6]	A	AT	3.199e^-5	0.333	INTERGENIC
2L	3440924	2L_3440924_SNP [dm3] 2L_3440924_SNP [dm6]	T	G	3.229e^-5	0.333	INTERGENIC
2L	6707116	2L_6707116_DEL [dm3] 2L_6707116_DEL [dm6]	TCCC	T	3.259e^-5	0.333	INTRON Tsp
2L	8659074	2L_8659074_INS [dm3] 2L_8659074_INS [dm6]	C	CCC	3.275e^-5	0.333	INTRON Sema-1a
3R	26707108	3R_26707108_SNP [dm3] 3R_30881386_SNP [dm6]	C	A	3.290e^-5	0.333	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9387986	2R_9387986_SNP [dm3] 2R_13500481_SNP [dm6]	G	A	3.319e^-5	0.333	UPSTREAM mars INTRON drk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15894982	3R_15894982_SNP [dm3] 3R_20069260_SNP [dm6]	T	C	3.333e^-5	0.333	INTERGENIC
2L	6770471	2L_6770471_SNP [dm3] 2L_6770471_SNP [dm6]	A	G	3.338e^-5	0.333	SYNONYMOUS_CODING CG11321
2R	6437763	2R_6437763_SNP [dm3] 2R_10550258_SNP [dm6]	G	A	3.349e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17920667	2R_17920667_SNP [dm3] 2R_22033162_SNP [dm6]	C	A	3.434e^-5	0.333	INTRON CG34370
X	10225532	X_10225532_INS [dm3] X_10331499_INS [dm6]	A	AA	3.440e^-5	0.333	INTRON CG15306
2R	20403002	2R_20403002_INS [dm3] 2R_24515479_INS [dm6]	A	ATGTATGTA	3.487e^-5	0.333	UPSTREAM Ir60b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	12089609	3R_12089609_SNP [dm3] 3R_16263887_SNP [dm6]	T	G	3.492e^-5	0.333	NON_SYNONYMOUS_CODING bor UPSTREAM asun	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	8878116	3L_8878116_SNP [dm3] 3L_8885016_SNP [dm6]	A	C	3.492e^-5	0.333	INTRON dally
2R	18285232	2R_18285232_SNP [dm3] 2R_22397727_SNP [dm6]	T	G	3.495e^-5	0.333	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17606790	2R_17606790_SNP [dm3] 2R_21719285_SNP [dm6]	A	G	3.503e^-5	0.333	SYNONYMOUS_CODING Tango11 DOWNSTREAM CG30398	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12267664	2L_12267664_SNP [dm3] 2L_12267664_SNP [dm6]	G	A	3.520e^-5	0.333	INTRON aret
2R	10043783	2R_10043783_SNP [dm3] 2R_14156278_SNP [dm6]	A	C	3.566e^-5	0.333	SYNONYMOUS_CODING pea DOWNSTREAM CG13018	TF binding site mE1_TFBS_sens
2L	4654535	2L_4654535_SNP [dm3] 2L_4654535_SNP [dm6]	G	A	3.592e^-5	0.333	INTERGENIC
2R	1216328	2R_1216328_INS [dm3] 2R_5328823_INS [dm6]	G	GTTGTGCAGTAGG...	3.598e^-5	0.333	INTRON sxc
2L	12195984	2L_12195984_SNP [dm3] 2L_12195984_SNP [dm6]	T	C	3.604e^-5	0.333	INTRON aret
2L	14332748	2L_14332748_DEL [dm3] 2L_14332748_DEL [dm6]	AT	C	3.623e^-5	0.333	INTRON ms_2_34Fe	TF binding site mE1_TFBS_cad
X	6565875	X_6565875_DEL [dm3] X_6671842_DEL [dm6]	TTGT	T	3.636e^-5	0.333	UTR_3_PRIME CG3198	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7224374	2L_7224374_SNP [dm3] 2L_7224374_SNP [dm6]	A	T	3.666e^-5	0.333	UTR_3_PRIME Ndae1 INTRON Ndae1
3R	15169676	3R_15169676_SNP [dm3] 3R_19343954_SNP [dm6]	A	G	3.674e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10261568	3L_10261568_DEL [dm3] 3L_10268468_DEL [dm6]	AGCACCA	A	3.676e^-5	0.333	INTERGENIC	regulatory region REDfly_CRMs
2L	8854663	2L_8854663_SNP [dm3] 2L_8854663_SNP [dm6]	A	G	3.691e^-5	0.333	INTERGENIC
2L	2275942	2L_2275942_SNP [dm3] 2L_2275942_SNP [dm6]	C	G	3.747e^-5	0.333	INTRON CR43753 EXON CR43753
3R	24598147	3R_24598147_SNP [dm3] 3R_28772425_SNP [dm6]	T	C	3.747e^-5	0.333	INTERGENIC
2L	4795603	2L_4795603_DEL [dm3] 2L_4795603_DEL [dm6]	TTAT	T	3.749e^-5	0.333	DOWNSTREAM Clect27 INTRON CG3294	TF binding site mE1_TFBS_cad
3R	17319504	3R_17319504_SNP [dm3] 3R_21493782_SNP [dm6]	C	A	3.771e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15241936	3R_15241936_SNP [dm3] 3R_19416214_SNP [dm6]	C	T	3.779e^-5	0.333	SYNONYMOUS_CODING CG31221
2R	17811032	2R_17811032_SNP [dm3] 2R_21923527_SNP [dm6]	G	T	3.785e^-5	0.333	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	25604867	3R_25604867_SNP [dm3] 3R_29779145_SNP [dm6]	A	C	3.797e^-5	0.333	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2L	8886920	2L_8886920_SNP [dm3] 2L_8886920_SNP [dm6]	A	G	3.871e^-5	0.333	DOWNSTREAM CR44415 EXON CR44415	TF binding site mE1_TFBS_cnc
X	6566283	X_6566283_DEL [dm3] X_6672250_DEL [dm6]	GT	G	3.876e^-5	0.333	INTRON CG3198	TF binding site mE1_TFBS_inv
3L	13534528	3L_13534528_INS [dm3] 3L_13541428_INS [dm6]	A	AGCGTA	3.880e^-5	0.333	INTRON bru-3
2L	5473046	2L_5473046_SNP [dm3] 2L_5473046_SNP [dm6]	A	C	3.885e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad
X	11177295	X_11177295_SNP [dm3] X_11283262_SNP [dm6]	C	T	3.919e^-5	0.333	INTRON CG44422
2L	650366	2L_650366_SNP [dm3] 2L_650366_SNP [dm6]	A	C	3.975e^-5	0.333	INTRON ds
3R	17852686	3R_17852686_SNP [dm3] 3R_22026964_SNP [dm6]	A	G	3.994e^-5	0.333	NON_SYNONYMOUS_CODING Cchl UPSTREAM ND42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16722675	X_16722675_DEL [dm3] X_16828642_DEL [dm6]	TG	T	4.000e^-5	0.333	UPSTREAM CG13004 INTRON CG13004
2R	17343127	2R_17343127_DEL [dm3] 2R_21455622_DEL [dm6]	TTCTAGACTGATGT...	T	4.001e^-5	0.333	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23128435	3R_23128435_SNP [dm3] 3R_27302713_SNP [dm6]	G	A	4.057e^-5	0.333	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
3R	13723660	3R_13723660_SNP [dm3] 3R_17897938_SNP [dm6]	G	T	4.061e^-5	0.333	INTRON Rim
3L	12402819	3L_12402819_INS [dm3] 3L_12409719_INS [dm6]	C	CCC	4.061e^-5	0.333	INTRON CG32103
3R	23129184	3R_23129184_SNP [dm3] 3R_27303462_SNP [dm6]	C	T	4.074e^-5	0.333	INTRON CG3339
2L	12552392	2L_12552392_SNP [dm3] 2L_12552392_SNP [dm6]	A	G	4.086e^-5	0.333	INTERGENIC
2L	12552394	2L_12552394_SNP [dm3] 2L_12552394_SNP [dm6]	A	T	4.086e^-5	0.333	INTERGENIC
2L	20341184	2L_20341184_DEL [dm3] 2L_20341184_DEL [dm6]	CAACTGGC	C	4.090e^-5	0.333	UPSTREAM spir INTRON spir
2R	7280615	2R_7280615_INS [dm3] 2R_11393110_INS [dm6]	T	TAGGATATATATATATACAA...	4.128e^-5	0.333	INTRON sprt
X	3741721	X_3741721_DEL [dm3] X_3847688_DEL [dm6]	AA	A	4.135e^-5	0.333	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11598016	2R_11598016_SNP [dm3] 2R_15710511_SNP [dm6]	C	A	4.136e^-5	0.333	INTERGENIC
2R	16320488	2R_16320488_DEL [dm3] 2R_20432983_DEL [dm6]	CC	C	4.159e^-5	0.333	INTRON CG12484
3L	16757809	3L_16757809_DEL [dm3] 3L_16764709_DEL [dm6]	TTG	T	4.159e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20433656	2L_20433656_DEL [dm3] 2L_20433656_DEL [dm6]	CACAATCGCA	G	4.189e^-5	0.333	INTRON CG31688
2L	6477627	2L_6477627_SNP [dm3] 2L_6477627_SNP [dm6]	T	A	4.190e^-5	0.333	UTR_3_PRIME Sec61alpha UPSTREAM CG9536	TF binding site mE1_TFBS_HSA
2R	7125274	2R_7125274_DEL [dm3] 2R_11237769_DEL [dm6]	CTC	T	4.206e^-5	0.333	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17343118	2R_17343118_SNP [dm3] 2R_21455613_SNP [dm6]	G	T	4.281e^-5	0.333	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8947896	3L_8947896_DEL [dm3] 3L_8954796_DEL [dm6]	TACTTTTTATTTT...	T	4.292e^-5	0.333	UPSTREAM GNBP3 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	1733902	2R_1733902_SNP [dm3] 2R_5846397_SNP [dm6]	G	C	4.300e^-5	0.333	INTRON dpr12
3R	23129205	3R_23129205_SNP [dm3] 3R_27303483_SNP [dm6]	A	G	4.303e^-5	0.333	INTRON CG3339
2L	2804588	2L_2804588_SNP [dm3] 2L_2804588_SNP [dm6]	C	G	4.334e^-5	0.333	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7280740	2R_7280740_SNP [dm3] 2R_11393235_SNP [dm6]	A	C	4.344e^-5	0.333	INTRON sprt
2L	4873641	2L_4873641_SNP [dm3] 2L_4873641_SNP [dm6]	A	C	4.356e^-5	0.333	UTR_3_PRIME pog INTRON pog
2L	4873659	2L_4873659_SNP [dm3] 2L_4873659_SNP [dm6]	T	C	4.356e^-5	0.333	UTR_3_PRIME pog INTRON pog
3R	23478678	3R_23478678_SNP [dm3] 3R_27652956_SNP [dm6]	C	T	4.373e^-5	0.333	SYNONYMOUS_CODING RpS10a INTRON tau
3R	18606034	3R_18606034_DEL [dm3] 3R_22780312_DEL [dm6]	TGAT	T	4.374e^-5	0.333	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2626814	2L_2626814_SNP [dm3] 2L_2626814_SNP [dm6]	T	A	4.389e^-5	0.333	EXON CR45705
3R	14843269	3R_14843269_SNP [dm3] 3R_19017547_SNP [dm6]	T	G	4.406e^-5	0.333	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10657621	3R_10657621_SNP [dm3] 3R_14831899_SNP [dm6]	C	A	4.419e^-5	0.333	INTRON btsz
2L	6461666	2L_6461666_INS [dm3] 2L_6461666_INS [dm6]	C	CATTGAGC	4.438e^-5	0.333	INTRON CG16947
2L	2018480	2L_2018480_SNP [dm3] 2L_2018480_SNP [dm6]	C	T	4.439e^-5	0.333	INTRON CG4238	TF binding site BDTNP1_TFBS_da
3L	12015753	3L_12015753_SNP [dm3] 3L_12022653_SNP [dm6]	T	C	4.443e^-5	0.333	INTRON rols
2R	10043681	2R_10043681_SNP [dm3] 2R_14156176_SNP [dm6]	G	A	4.506e^-5	0.336	SYNONYMOUS_CODING pea DOWNSTREAM CG13018	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13169997	2R_13169997_SNP [dm3] 2R_17282492_SNP [dm6]	C	G	4.528e^-5	0.336	INTRON mbl
3R	19447129	3R_19447129_SNP [dm3] 3R_23621407_SNP [dm6]	A	G	4.546e^-5	0.336	INTRON CG31145
2L	4742706	2L_4742706_SNP [dm3] 2L_4742706_SNP [dm6]	G	A	4.578e^-5	0.336	INTRON CG15630
2L	3786894	2L_3786894_SNP [dm3] 2L_3786894_SNP [dm6]	C	T	4.590e^-5	0.336	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17820604	3R_17820604_DEL [dm3] 3R_21994882_DEL [dm6]	GG	G	4.616e^-5	0.336	INTRON Eip93F
3R	15241506	3R_15241506_SNP [dm3] 3R_19415784_SNP [dm6]	C	A	4.632e^-5	0.336	UTR_5_PRIME CG31221
3L	18720614	3L_18720614_SNP [dm3] 3L_18727514_SNP [dm6]	C	G	4.644e^-5	0.336	INTERGENIC
3R	25210361	3R_25210361_SNP [dm3] 3R_29384639_SNP [dm6]	G	T	4.694e^-5	0.336	INTRON Ptp99A
2L	17620247	2L_17620247_SNP [dm3] 2L_17620247_SNP [dm6]	T	A	4.708e^-5	0.336	INTERGENIC
2L	4709248	2L_4709248_SNP [dm3] 2L_4709248_SNP [dm6]	T	A	4.720e^-5	0.336	INTRON CG34351
2L	4710054	2L_4710054_DEL [dm3] 2L_4710054_DEL [dm6]	CCATTA	C	4.720e^-5	0.336	INTRON CG34351
X	13822879	X_13822879_SNP [dm3] X_13928846_SNP [dm6]	A	G	4.721e^-5	0.336	INTRON mamo
3R	26707030	3R_26707030_SNP [dm3] 3R_30881308_SNP [dm6]	T	A	4.726e^-5	0.336	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10043753	2R_10043753_SNP [dm3] 2R_14156248_SNP [dm6]	C	A	4.745e^-5	0.336	SYNONYMOUS_CODING pea DOWNSTREAM CG13018	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10398628	2L_10398628_INS [dm3] 2L_10398628_INS [dm6]	A	AT	4.783e^-5	0.336	INTRON Cnot4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13169996	2R_13169996_SNP [dm3] 2R_17282491_SNP [dm6]	T	G	4.783e^-5	0.336	INTRON mbl
2L	2695673	2L_2695673_SNP [dm3] 2L_2695673_SNP [dm6]	G	A	4.875e^-5	0.341	SYNONYMOUS_CODING CG15398 INTRON CG31690	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12279600	2L_12279600_DEL [dm3] 2L_12279600_DEL [dm6]	GCCTCG	G	4.914e^-5	0.341	INTRON aret
3R	20476089	3R_20476089_DEL [dm3] 3R_24650367_DEL [dm6]	TT	T	4.931e^-5	0.341	UPSTREAM puf & 1 other INTRON ash2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	16632557	2L_16632557_INS [dm3] 2L_16632557_INS [dm6]	A	ACATGTA	4.958e^-5	0.341	INTRON CG42389
2R	18000772	2R_18000772_SNP [dm3] 2R_22113267_SNP [dm6]	G	A	4.958e^-5	0.341	UPSTREAM CG30280 & 1 other INTRON Vrp1
2L	4988872	2L_4988872_SNP [dm3] 2L_4988872_SNP [dm6]	T	A	4.977e^-5	0.341	INTRON CG34126
3L	11652522	3L_11652522_SNP [dm3] 3L_11659422_SNP [dm6]	T	C	4.979e^-5	0.341	INTRON CG32085
3R	9802815	3R_9802815_SNP [dm3] 3R_13977093_SNP [dm6]	A	G	5.055e^-5	0.344	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12254195	2L_12254195_SNP [dm3] 2L_12254195_SNP [dm6]	T	C	5.061e^-5	0.344	INTRON aret
3R	16242192	3R_16242192_SNP [dm3] 3R_20416470_SNP [dm6]	C	G	5.122e^-5	0.347	INTRON Gfrl
2R	16735692	2R_16735692_SNP [dm3] 2R_20848187_SNP [dm6]	G	T	5.166e^-5	0.347	NON_SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4688671	2L_4688671_SNP [dm3] 2L_4688671_SNP [dm6]	C	A	5.181e^-5	0.347	SYNONYMOUS_CODING Elba3 DOWNSTREAM CG3251
2R	11597319	2R_11597319_SNP [dm3] 2R_15709814_SNP [dm6]	A	G	5.233e^-5	0.347	INTERGENIC
2R	17998083	2R_17998083_SNP [dm3] 2R_22110578_SNP [dm6]	C	A	5.291e^-5	0.347	SYNONYMOUS_CODING Vrp1	TF binding site mE1_TFBS_cad
3R	17827272	3R_17827272_SNP [dm3] 3R_22001550_SNP [dm6]	T	C	5.302e^-5	0.347	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16735636	2R_16735636_SNP [dm3] 2R_20848131_SNP [dm6]	G	T	5.322e^-5	0.347	NON_SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
2L	10416557	2L_10416557_SNP [dm3] 2L_10416557_SNP [dm6]	G	A	5.364e^-5	0.347	SYNONYMOUS_CODING Klp31E
X	18899629	X_18899629_SNP [dm3] X_19005596_SNP [dm6]	G	A	5.423e^-5	0.347	INTRON CG43759
2L	6765722	2L_6765722_SNP [dm3] 2L_6765722_SNP [dm6]	C	T	5.434e^-5	0.347	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_cad
3R	22047559	3R_22047559_SNP [dm3] 3R_26221837_SNP [dm6]	A	C	5.459e^-5	0.347	INTERGENIC
2L	2628645	2L_2628645_SNP [dm3] 2L_2628645_SNP [dm6]	C	G	5.467e^-5	0.347	UPSTREAM CR45705 INTERGENIC
2L	21931800	2L_21931800_SNP [dm3] 2L_21931800_SNP [dm6]	G	T	5.470e^-5	0.347	EXON CR45334
3R	13166674	3R_13166674_SNP [dm3] 3R_17340952_SNP [dm6]	T	G	5.482e^-5	0.347	INTRON beat-IIa
3L	21833119	3L_21833119_SNP [dm3] 3L_21840019_SNP [dm6]	C	T	5.492e^-5	0.347	INTRON P5CDh1	TF binding site BDTNP1_TFBS_dl
2L	4775620	2L_4775620_SNP [dm3] 2L_4775620_SNP [dm6]	T	C	5.515e^-5	0.347	INTRON CG15630
2L	13643345	2L_13643345_SNP [dm3] 2L_13643345_SNP [dm6]	T	C	5.530e^-5	0.347	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
2L	21127402	2L_21127402_SNP [dm3] 2L_21127402_SNP [dm6]	C	T	5.542e^-5	0.347	INTRON Nhe2
2R	16114668	2R_16114668_SNP [dm3] 2R_20227163_SNP [dm6]	C	T	5.561e^-5	0.347	INTERGENIC
2L	2827068	2L_2827068_SNP [dm3] 2L_2827068_SNP [dm6]	A	T	5.583e^-5	0.347	INTRON Duox
3L	10206960	3L_10206960_DEL [dm3] 3L_10213860_DEL [dm6]	GTGATTGG	G	5.604e^-5	0.347	INTERGENIC
2L	8884973	2L_8884973_SNP [dm3] 2L_8884973_SNP [dm6]	G	A	5.648e^-5	0.347	INTERGENIC
3R	10139995	3R_10139995_SNP [dm3] 3R_14314273_SNP [dm6]	T	C	5.665e^-5	0.347	UTR_3_PRIME CG31321 UPSTREAM Crz
3L	13355483	3L_13355483_DEL [dm3] 3L_13362383_DEL [dm6]	AT	A	5.675e^-5	0.347	INTERGENIC
2L	2687538	2L_2687538_SNP [dm3] 2L_2687538_SNP [dm6]	C	T	5.676e^-5	0.347	INTRON CG31690
2L	21939393	2L_21939393_SNP [dm3] 2L_21939393_SNP [dm6]	G	C	5.692e^-5	0.347	INTERGENIC
2R	13299697	2R_13299697_DEL [dm3] 2R_17412192_DEL [dm6]	TC	T	5.695e^-5	0.347	UPSTREAM Prosalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20667801	3R_20667801_SNP [dm3] 3R_24842079_SNP [dm6]	T	C	5.702e^-5	0.347	UTR_5_PRIME Esp UPSTREAM CG33658
2R	7139613	2R_7139613_SNP [dm3] 2R_11252108_SNP [dm6]	G	A	5.703e^-5	0.347	UTR_3_PRIME Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17321242	3R_17321242_SNP [dm3] 3R_21495520_SNP [dm6]	T	C	5.706e^-5	0.347	INTERGENIC
2R	834673	2R_834673_DEL [dm3] 2R_4947168_DEL [dm6]	GCCAGA	G	5.721e^-5	0.347	INTRON Ir41a	transposable element FlyBase
X	11479413	X_11479413_SNP [dm3] X_11585380_SNP [dm6]	C	G	5.738e^-5	0.347	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18066920	2R_18066920_DEL [dm3] 2R_22179415_DEL [dm6]	TT	T	5.759e^-5	0.347	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18251207	3R_18251207_SNP [dm3] 3R_22425485_SNP [dm6]	G	C	5.770e^-5	0.347	UTR_3_PRIME CG13847 UPSTREAM pinta	TF binding site mE1_TFBS_HSA
2R	11397677	2R_11397677_INS [dm3] 2R_15510172_INS [dm6]	T	TAT	5.790e^-5	0.347	INTERGENIC
2L	12230619	2L_12230619_SNP [dm3] 2L_12230619_SNP [dm6]	T	C	5.802e^-5	0.347	INTRON aret
2L	4621187	2L_4621187_SNP [dm3] 2L_4621187_SNP [dm6]	A	G	5.822e^-5	0.347	DOWNSTREAM CR44609 INTERGENIC
2R	4145839	2R_4145839_SNP [dm3] 2R_8258334_SNP [dm6]	G	T	5.839e^-5	0.347	UPSTREAM CG30369 INTERGENIC
2R	1149738	2R_1149738_DEL [dm3] 2R_5262233_DEL [dm6]	CT	C	5.873e^-5	0.347	INTRON d4	transposable element FlyBase
X	20880150	X_20880150_DEL [dm3] X_21009123_DEL [dm6]	AACACACACAA...	A	5.905e^-5	0.347	INTERGENIC
2L	1826202	2L_1826202_SNP [dm3] 2L_1826202_SNP [dm6]	G	T	5.907e^-5	0.347	UTR_5_PRIME CG31664
2R	17762038	2R_17762038_SNP [dm3] 2R_21874533_SNP [dm6]	T	A	5.917e^-5	0.347	INTRON Fili	TF binding site BDTNP1_TFBS_da
3R	22038381	3R_22038381_SNP [dm3] 3R_26212659_SNP [dm6]	G	C	5.922e^-5	0.347	INTERGENIC
3L	20067053	3L_20067053_SNP [dm3] 3L_20073953_SNP [dm6]	C	A	5.951e^-5	0.347	INTRON sNPF-R	TF binding site mE1_TFBS_cad
2R	20378584	2R_20378584_DEL [dm3] 2R_24491061_DEL [dm6]	TT	T	5.953e^-5	0.347	DOWNSTREAM CG13579 INTERGENIC
2L	4861953	2L_4861953_DEL [dm3] 2L_4861953_DEL [dm6]	GG	G	5.983e^-5	0.347	INTRON pog
3R	19466188	3R_19466188_INS [dm3] 3R_23640466_INS [dm6]	A	AG	6.006e^-5	0.347	INTRON CG31145
X	10178371	X_10178371_SNP [dm3] X_10284338_SNP [dm6]	A	G	6.017e^-5	0.347	INTRON alpha-Man-I
2L	8883536	2L_8883536_SNP [dm3] 2L_8883536_SNP [dm6]	C	T	6.054e^-5	0.347	INTERGENIC
2L	8837498	2L_8837498_DEL [dm3] 2L_8837498_DEL [dm6]	AC	G	6.073e^-5	0.347	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14889415	3R_14889415_INS [dm3] 3R_19063693_INS [dm6]	T	TT	6.080e^-5	0.347	INTRON cdi
2R	11965360	2R_11965360_INS [dm3] 2R_16077855_INS [dm6]	A	ACAACA	6.110e^-5	0.347	DOWNSTREAM CR43415 INTERGENIC
2L	2827081	2L_2827081_DEL [dm3] 2L_2827081_DEL [dm6]	GTTAG	G	6.113e^-5	0.347	INTRON Duox
2L	16212900	2L_16212900_SNP [dm3] 2L_16212900_SNP [dm6]	G	A	6.143e^-5	0.347	SYNONYMOUS_CODING CG31819
3R	18296977	3R_18296977_SNP [dm3] 3R_22471255_SNP [dm6]	C	T	6.144e^-5	0.347	SYNONYMOUS_CODING Nrx-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9040934	2L_9040934_DEL [dm3] 2L_9040934_DEL [dm6]	GAGTAAAA	G	6.154e^-5	0.347	INTERGENIC
2L	18389087	2L_18389087_DEL [dm3] 2L_18389087_DEL [dm6]	AAGACTTAAAGCTGATGTGT...	A	6.163e^-5	0.347	UTR_3_PRIME Fas3 INTRON Fas3
2R	7274858	2R_7274858_INS [dm3] 2R_11387353_INS [dm6]	A	AT	6.179e^-5	0.347	INTRON sprt & 1 other
2L	4501037	2L_4501037_SNP [dm3] 2L_4501037_SNP [dm6]	C	T	6.221e^-5	0.348	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4988871	2L_4988871_SNP [dm3] 2L_4988871_SNP [dm6]	C	A	6.272e^-5	0.35	INTRON CG34126
2L	12185743	2L_12185743_DEL [dm3] 2L_12185743_DEL [dm6]	AGCTATACAC	A	6.330e^-5	0.352	INTRON aret	TF binding site BDTNP1_TFBS_dl
2L	8886059	2L_8886059_SNP [dm3] 2L_8886059_SNP [dm6]	G	C	6.344e^-5	0.352	DOWNSTREAM CR44415 INTERGENIC
2L	17230286	2L_17230286_DEL [dm3] 2L_17230286_DEL [dm6]	AAGAACTATC	A	6.416e^-5	0.354	INTRON beat-IIIc
3R	26821727	3R_26821727_SNP [dm3] 3R_30996005_SNP [dm6]	G	A	6.433e^-5	0.354	INTRON 5-HT7
3R	19466264	3R_19466264_SNP [dm3] 3R_23640542_SNP [dm6]	G	C	6.437e^-5	0.354	INTRON CG31145
2L	16210479	2L_16210479_SNP [dm3] 2L_16210479_SNP [dm6]	A	G	6.567e^-5	0.355	UPSTREAM CG31819 INTERGENIC
3R	15481759	3R_15481759_SNP [dm3] 3R_19656037_SNP [dm6]	G	T	6.606e^-5	0.355	INTRON CG6184	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9866242	2L_9866242_SNP [dm3] 2L_9866242_SNP [dm6]	T	G	6.608e^-5	0.355	INTRON nAChRalpha6
2L	9866255	2L_9866255_SNP [dm3] 2L_9866255_SNP [dm6]	G	C	6.608e^-5	0.355	INTRON nAChRalpha6
2L	21263824	2L_21263824_DEL [dm3] 2L_21263824_DEL [dm6]	CCAAA	C	6.618e^-5	0.355	UPSTREAM mir-4974 INTRON CG8671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17567285	2L_17567285_SNP [dm3] 2L_17567285_SNP [dm6]	C	A	6.619e^-5	0.355	DOWNSTREAM mir-124 INTERGENIC
2L	5026634	2L_5026634_SNP [dm3] 2L_5026634_SNP [dm6]	C	T	6.623e^-5	0.355	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	17920666	2R_17920666_SNP [dm3] 2R_22033161_SNP [dm6]	T	C	6.630e^-5	0.355	INTRON CG34370
X	9653567	X_9653567_INS [dm3] X_9759534_INS [dm6]	T	TGTATAT	6.653e^-5	0.355	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	25219002	3R_25219002_DEL [dm3] 3R_29393280_DEL [dm6]	GATTTTCGCA	G	6.659e^-5	0.355	INTRON Ptp99A
2R	6175206	2R_6175206_INS [dm3] 2R_10287701_INS [dm6]	A	AA	6.667e^-5	0.355	UPSTREAM CAP INTRON CAP
2L	9952222	2L_9952222_SNP [dm3] 2L_9952222_SNP [dm6]	G	A	6.718e^-5	0.357	UTR_3_PRIME CG13126 DOWNSTREAM CG13126	TF binding site mE1_TFBS_inv
3R	11252079	3R_11252079_DEL [dm3] 3R_15426357_DEL [dm6]	GCTC	G	6.734e^-5	0.357	INTRON CG6118
X	3920530	X_3920530_DEL [dm3] X_4026497_DEL [dm6]	GAAG	G	6.784e^-5	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	2429475	2L_2429475_INS [dm3] 2L_2429475_INS [dm6]	T	TCAAT	6.808e^-5	0.357	INTRON dpp
2R	1149741	2R_1149741_SNP [dm3] 2R_5262236_SNP [dm6]	T	C	6.880e^-5	0.357	INTRON d4	transposable element FlyBase
3L	20066877	3L_20066877_SNP [dm3] 3L_20073777_SNP [dm6]	C	A	6.882e^-5	0.357	INTRON sNPF-R
2L	7104808	2L_7104808_DEL [dm3] 2L_7104808_DEL [dm6]	AGAACATACTAATGTAGAAA...	A	6.905e^-5	0.357	INTRON Pvf3
2R	10088125	2R_10088125_SNP [dm3] 2R_14200620_SNP [dm6]	T	C	6.940e^-5	0.357	SYNONYMOUS_CODING VGAT DOWNSTREAM Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13573147	2R_13573147_SNP [dm3] 2R_17685642_SNP [dm6]	A	G	6.964e^-5	0.357	UPSTREAM CG42562 DOWNSTREAM CG42561 INTRON HPS4
2L	21939474	2L_21939474_INS [dm3] 2L_21939474_INS [dm6]	T	TT	6.974e^-5	0.357	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16634706	3L_16634706_DEL [dm3] 3L_16641606_DEL [dm6]	AA	G	6.980e^-5	0.357	INTRON Abl
2L	3224618	2L_3224618_SNP [dm3] 2L_3224618_SNP [dm6]	A	T	7.054e^-5	0.357	INTERGENIC
X	16679166	X_16679166_DEL [dm3] X_16785133_DEL [dm6]	AGGA	A	7.065e^-5	0.357	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
2L	3218525	2L_3218525_SNP [dm3] 2L_3218525_SNP [dm6]	A	C	7.065e^-5	0.357	INTERGENIC
3R	25210366	3R_25210366_SNP [dm3] 3R_29384644_SNP [dm6]	G	C	7.067e^-5	0.357	INTRON Ptp99A
2L	13466591	2L_13466591_SNP [dm3] 2L_13466591_SNP [dm6]	G	A	7.069e^-5	0.357	INTRON CG42784
2L	3597369	2L_3597369_DEL [dm3] 2L_3597369_DEL [dm6]	TTTCTTG	T	7.069e^-5	0.357	INTERGENIC
X	14522746	X_14522746_SNP [dm3] X_14628713_SNP [dm6]	T	C	7.083e^-5	0.357	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26707052	3R_26707052_SNP [dm3] 3R_30881330_SNP [dm6]	A	T	7.086e^-5	0.357	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7153675	2L_7153675_SNP [dm3] 2L_7153675_SNP [dm6]	G	A	7.107e^-5	0.357	INTRON Pvf3
2L	20760907	2L_20760907_SNP [dm3] 2L_20760907_SNP [dm6]	A	G	7.133e^-5	0.357	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3178971	2L_3178971_DEL [dm3] 2L_3178971_DEL [dm6]	GGCCAGAG	G	7.134e^-5	0.357	INTRON CG34393
2L	9320520	2L_9320520_INS [dm3] 2L_9320520_INS [dm6]	C	CTTGAA	7.151e^-5	0.357	INTERGENIC
2R	11772275	2R_11772275_INS [dm3] 2R_15884770_INS [dm6]	G	GATGTG	7.155e^-5	0.357	INTRON sli
2L	3233789	2L_3233789_SNP [dm3] 2L_3233789_SNP [dm6]	C	T	7.176e^-5	0.357	INTERGENIC
3L	21785103	3L_21785103_SNP [dm3] 3L_21792003_SNP [dm6]	A	G	7.197e^-5	0.357	INTERGENIC
3L	1807426	3L_1807426_DEL [dm3] 3L_1807426_DEL [dm6]	AT	A	7.232e^-5	0.357	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC
2L	4691730	2L_4691730_SNP [dm3] 2L_4691730_SNP [dm6]	A	G	7.257e^-5	0.357	INTERGENIC
2L	3218520	2L_3218520_SNP [dm3] 2L_3218520_SNP [dm6]	C	T	7.269e^-5	0.357	INTERGENIC
2L	6477629	2L_6477629_SNP [dm3] 2L_6477629_SNP [dm6]	A	G	7.272e^-5	0.357	UTR_3_PRIME Sec61alpha UPSTREAM CG9536	TF binding site mE1_TFBS_HSA
3L	21872816	3L_21872816_DEL [dm3] 3L_21879716_DEL [dm6]	CC	C	7.315e^-5	0.358	UTR_5_PRIME mub INTRON mub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	6000299	X_6000299_DEL [dm3] X_6106266_DEL [dm6]	GG	G	7.356e^-5	0.359	UTR_3_PRIME Ca-alpha1T	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20069209	3L_20069209_SNP [dm3] 3L_20076109_SNP [dm6]	C	T	7.379e^-5	0.359	UTR_5_PRIME sNPF-R	TF binding site mE1_TFBS_cad
3L	12107229	3L_12107229_SNP [dm3] 3L_12114129_SNP [dm6]	A	T	7.398e^-5	0.359	INTERGENIC
2L	4830920	2L_4830920_SNP [dm3] 2L_4830920_SNP [dm6]	G	C	7.415e^-5	0.359	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	17762037	2R_17762037_SNP [dm3] 2R_21874532_SNP [dm6]	A	C	7.428e^-5	0.359	INTRON Fili	TF binding site BDTNP1_TFBS_da
2L	2276015	2L_2276015_SNP [dm3] 2L_2276015_SNP [dm6]	G	C	7.438e^-5	0.359	INTRON CR43753 EXON CR43753
3R	799175	3R_799175_SNP [dm3] 3R_4973453_SNP [dm6]	A	C	7.459e^-5	0.359	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
2R	19921568	2R_19921568_INS [dm3] 2R_24034045_INS [dm6]	T	TT	7.507e^-5	0.36	UTR_5_PRIME MAN1 UPSTREAM MAN1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	3197226	2L_3197226_SNP [dm3] 2L_3197226_SNP [dm6]	C	T	7.573e^-5	0.362	INTRON CG34393
3R	11027301	3R_11027301_SNP [dm3] 3R_15201579_SNP [dm6]	G	C	7.637e^-5	0.363	INTRON CG42542
2L	16210540	2L_16210540_DEL [dm3] 2L_16210540_DEL [dm6]	GGCTTG	G	7.660e^-5	0.363	UPSTREAM CG31819 INTERGENIC
X	21441875	X_21441875_INS [dm3] X_21570848_INS [dm6]	C	CA	7.696e^-5	0.363	INTERGENIC
2L	2074478	2L_2074478_SNP [dm3] 2L_2074478_SNP [dm6]	C	A	7.733e^-5	0.363	INTRON dpr3
3R	17522778	3R_17522778_DEL [dm3] 3R_21697056_DEL [dm6]	AA	A	7.733e^-5	0.363	INTRON CG31176
3R	22520451	3R_22520451_SNP [dm3] 3R_26694729_SNP [dm6]	T	A	7.799e^-5	0.363	INTERGENIC
2L	12153178	2L_12153178_SNP [dm3] 2L_12153178_SNP [dm6]	G	A	7.810e^-5	0.363	INTRON CG31760
2L	4859510	2L_4859510_SNP [dm3] 2L_4859510_SNP [dm6]	A	G	7.830e^-5	0.363	INTRON pog
3L	15573586	3L_15573586_SNP [dm3] 3L_15580486_SNP [dm6]	A	G	7.837e^-5	0.363	SYNONYMOUS_CODING mrn UPSTREAM CG12301	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8659121	2L_8659121_SNP [dm3] 2L_8659121_SNP [dm6]	T	C	7.887e^-5	0.363	INTRON Sema-1a
2L	21272592	2L_21272592_SNP [dm3] 2L_21272592_SNP [dm6]	G	A	7.888e^-5	0.363	INTRON CG8671	TF binding site mE1_TFBS_HSA mE1_TFBS_kn transposable element FlyBase
3R	14974159	3R_14974159_SNP [dm3] 3R_19148437_SNP [dm6]	G	A	7.911e^-5	0.363	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	16776732	3R_16776732_SNP [dm3] 3R_20951010_SNP [dm6]	T	A	7.924e^-5	0.363	INTRON Atpalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9951325	2L_9951325_DEL [dm3] 2L_9951325_DEL [dm6]	AA	A	7.942e^-5	0.363	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
2L	3786896	2L_3786896_SNP [dm3] 2L_3786896_SNP [dm6]	C	G	7.974e^-5	0.363	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	927978	3R_927978_DEL [dm3] 3R_5102256_DEL [dm6]	TTATGA	T	7.978e^-5	0.363	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18129422	2R_18129422_SNP [dm3] 2R_22241917_SNP [dm6]	A	G	7.989e^-5	0.363	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3L	10938991	3L_10938991_INS [dm3] 3L_10945891_INS [dm6]	A	AA	7.991e^-5	0.363	DOWNSTREAM CG34050 INTERGENIC
3R	10559943	3R_10559943_SNP [dm3] 3R_14734221_SNP [dm6]	A	T	7.998e^-5	0.363	INTRON eff
3R	24667244	3R_24667244_SNP [dm3] 3R_28841522_SNP [dm6]	A	C	8.003e^-5	0.363	INTRON Apc	TF binding site BDTNP1_TFBS_twi
3R	21967506	3R_21967506_INS [dm3] 3R_26141784_INS [dm6]	A	GACGGCGGATT...	8.030e^-5	0.363	INTERGENIC
2L	12153278	2L_12153278_SNP [dm3] 2L_12153278_SNP [dm6]	G	A	8.054e^-5	0.363	INTRON CG31760
2L	4719506	2L_4719506_SNP [dm3] 2L_4719506_SNP [dm6]	G	A	8.117e^-5	0.363	INTRON CG34351
2R	18000245	2R_18000245_SNP [dm3] 2R_22112740_SNP [dm6]	A	T	8.128e^-5	0.363	UTR_5_PRIME Vrp1 UPSTREAM CG30280 INTRON Vrp1
2L	7222594	2L_7222594_SNP [dm3] 2L_7222594_SNP [dm6]	A	G	8.134e^-5	0.363	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19895004	3R_19895004_SNP [dm3] 3R_24069282_SNP [dm6]	T	C	8.148e^-5	0.363	INTRON 4EHP
2L	18994692	2L_18994692_SNP [dm3] 2L_18994692_SNP [dm6]	T	C	8.161e^-5	0.363	NON_SYNONYMOUS_CODING CG10650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20125599	2L_20125599_DEL [dm3] 2L_20125599_DEL [dm6]	TC	T	8.183e^-5	0.363	INTERGENIC
2R	18034872	2R_18034872_SNP [dm3] 2R_22147367_SNP [dm6]	A	G	8.184e^-5	0.363	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15783749	3L_15783749_DEL [dm3] 3L_15790649_DEL [dm6]	AAC	A	8.202e^-5	0.363	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5090978	2L_5090978_SNP [dm3] 2L_5090978_SNP [dm6]	C	T	8.203e^-5	0.363	INTRON pgant5
2L	10488378	2L_10488378_DEL [dm3] 2L_10488378_DEL [dm6]	CTC	C	8.206e^-5	0.363	UPSTREAM CG6144 INTRON CG7456	TF binding site mE1_TFBS_Ubx
3R	26709596	3R_26709596_SNP [dm3] 3R_30883874_SNP [dm6]	A	G	8.228e^-5	0.363	UTR_3_PRIME Sap-r UPSTREAM CG15547	TF binding site mE1_TFBS_cad
2R	17559522	2R_17559522_SNP [dm3] 2R_21672017_SNP [dm6]	G	C	8.299e^-5	0.365	NON_SYNONYMOUS_CODING CG15676 DOWNSTREAM NC2alpha
2R	17343146	2R_17343146_INS [dm3] 2R_21455641_INS [dm6]	T	TC	8.310e^-5	0.365	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13119226	2L_13119226_SNP [dm3] 2L_13119226_SNP [dm6]	A	G	8.326e^-5	0.365	UPSTREAM CG43050 EXON CR44198
2R	10087495	2R_10087495_SNP [dm3] 2R_14199990_SNP [dm6]	A	G	8.371e^-5	0.366	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4879898	2R_4879898_DEL [dm3] 2R_8992393_DEL [dm6]	AATTCGTGTAA...	A	8.397e^-5	0.366	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1962232	3L_1962232_SNP [dm3] 3L_1962232_SNP [dm6]	G	A	8.401e^-5	0.366	SPLICE_SITE_REGION mv UPSTREAM SCOT INTRON mv
2L	4859501	2L_4859501_SNP [dm3] 2L_4859501_SNP [dm6]	C	T	8.475e^-5	0.368	INTRON pog
3R	17550485	3R_17550485_SNP [dm3] 3R_21724763_SNP [dm6]	T	C	8.491e^-5	0.368	INTERGENIC
2L	12513733	2L_12513733_SNP [dm3] 2L_12513733_SNP [dm6]	T	C	8.666e^-5	0.37	INTRON bun
3R	15180912	3R_15180912_INS [dm3] 3R_19355190_INS [dm6]	T	TGTGAGAAACTGATACTCAC...	8.685e^-5	0.37	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	18356606	3R_18356606_SNP [dm3] 3R_22530884_SNP [dm6]	T	C	8.754e^-5	0.37	NON_SYNONYMOUS_CODING CG33093 UPSTREAM CG33099	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10886940	3L_10886940_SNP [dm3] 3L_10893840_SNP [dm6]	C	A	8.770e^-5	0.37	UPSTREAM Cpr67Fb DOWNSTREAM Aps EXON CR45171
3L	14380645	3L_14380645_SNP [dm3] 3L_14387545_SNP [dm6]	G	A	8.775e^-5	0.37	INTERGENIC
3L	10682233	3L_10682233_SNP [dm3] 3L_10689133_SNP [dm6]	A	T	8.778e^-5	0.37	UTR_3_PRIME simj	TF binding site mE1_TFBS_cad
2L	12351173	2L_12351173_SNP [dm3] 2L_12351173_SNP [dm6]	T	C	8.799e^-5	0.37	INTRON bru-2
3L	15574000	3L_15574000_SNP [dm3] 3L_15580900_SNP [dm6]	A	G	8.803e^-5	0.37	NON_SYNONYMOUS_CODING CG12301 UPSTREAM mrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3731213	2L_3731213_DEL [dm3] 2L_3731213_DEL [dm6]	ATCT	G	8.806e^-5	0.37	INTRON CG10019
2L	4764830	2L_4764830_INS [dm3] 2L_4764830_INS [dm6]	T	TCCTTTGTAT	8.810e^-5	0.37	DOWNSTREAM CG42523 INTRON CG15630
3L	4167929	3L_4167929_SNP [dm3] 3L_4167929_SNP [dm6]	C	A	8.811e^-5	0.37	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	2276448	2L_2276448_SNP [dm3] 2L_2276448_SNP [dm6]	G	T	8.817e^-5	0.37	INTRON CR43753
2L	4861684	2L_4861684_SNP [dm3] 2L_4861684_SNP [dm6]	C	A	8.845e^-5	0.37	INTRON pog
2R	16735691	2R_16735691_SNP [dm3] 2R_20848186_SNP [dm6]	G	A	8.873e^-5	0.37	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18586145	2L_18586145_SNP [dm3] 2L_18586145_SNP [dm6]	A	C	8.875e^-5	0.37	INTRON Pde11
2R	4084560	2R_4084560_SNP [dm3] 2R_8197055_SNP [dm6]	G	C	8.876e^-5	0.37	INTRON LRP1
3R	19625275	3R_19625275_SNP [dm3] 3R_23799553_SNP [dm6]	T	C	8.987e^-5	0.37	INTRON mbc
2L	2017293	2L_2017293_INS [dm3] 2L_2017293_INS [dm6]	G	TTAAA	9.010e^-5	0.37	UPSTREAM CG4238 INTRON CG4238
2L	4654529	2L_4654529_SNP [dm3] 2L_4654529_SNP [dm6]	A	G	9.037e^-5	0.37	INTERGENIC
2L	14847515	2L_14847515_INS [dm3] 2L_14847515_INS [dm6]	G	GG	9.038e^-5	0.37	INTRON CG15279
2L	7104807	2L_7104807_SNP [dm3] 2L_7104807_SNP [dm6]	G	T	9.049e^-5	0.37	INTRON Pvf3
3L	5235076	3L_5235076_INS [dm3] 3L_5241976_INS [dm6]	G	GGG	9.052e^-5	0.37	INTRON shep
3R	19466255	3R_19466255_SNP [dm3] 3R_23640533_SNP [dm6]	A	C	9.053e^-5	0.37	INTRON CG31145
2R	1150436	2R_1150436_MNP [dm3] 2R_5262931_MNP [dm6]	AATAA	GTATT	9.096e^-5	0.37	INTRON d4
3R	26709429	3R_26709429_SNP [dm3] 3R_30883707_SNP [dm6]	T	A	9.100e^-5	0.37	UTR_3_PRIME Sap-r UPSTREAM CG15547
2R	10182386	2R_10182386_DEL [dm3] 2R_14294881_DEL [dm6]	TGCTTTAAAGGGACTAGGCA...	T	9.112e^-5	0.37	UTR_3_PRIME Ih INTRON Ih
3L	14296654	3L_14296654_SNP [dm3] 3L_14303554_SNP [dm6]	T	A	9.114e^-5	0.37	INTRON fz
2L	1849380	2L_1849380_DEL [dm3] 2L_1849380_DEL [dm6]	ACAGTAAACAATGTGCTGTG...	A	9.120e^-5	0.37	INTRON wry
2R	7483650	2R_7483650_SNP [dm3] 2R_11596145_SNP [dm6]	C	G	9.139e^-5	0.37	INTRON tou	TF binding site BDTNP1_TFBS_twi
2L	8886750	2L_8886750_SNP [dm3] 2L_8886750_SNP [dm6]	G	T	9.185e^-5	0.37	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	16735628	2R_16735628_SNP [dm3] 2R_20848123_SNP [dm6]	C	T	9.190e^-5	0.37	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
2L	10544917	2L_10544917_SNP [dm3] 2L_10544917_SNP [dm6]	T	C	9.196e^-5	0.37	START_GAINED Trim9 UTR_5_PRIME Trim9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10886697	3L_10886697_DEL [dm3] 3L_10893597_DEL [dm6]	TCCTTTTAAAATTAAATGTT...	T	9.212e^-5	0.37	UPSTREAM Cpr67Fb DOWNSTREAM CR45171 INTERGENIC
2R	18285212	2R_18285212_SNP [dm3] 2R_22397707_SNP [dm6]	A	G	9.216e^-5	0.37	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4069466	2R_4069466_SNP [dm3] 2R_8181961_SNP [dm6]	G	A	9.258e^-5	0.371	INTRON LRP1
2R	18127354	2R_18127354_SNP [dm3] 2R_22239849_SNP [dm6]	G	A	9.267e^-5	0.371	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25605188	3R_25605188_SNP [dm3] 3R_29779466_SNP [dm6]	C	T	9.296e^-5	0.371	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2112108	2R_2112108_SNP [dm3] 2R_6224603_SNP [dm6]	A	G	9.304e^-5	0.371	INTRON bin3	TF binding site BDTNP1_TFBS_hb
X	9387528	X_9387528_DEL [dm3] X_9493495_DEL [dm6]	CC	C	9.345e^-5	0.371	INTRON mgl
2L	12294205	2L_12294205_SNP [dm3] 2L_12294205_SNP [dm6]	G	C	9.396e^-5	0.371	INTRON aret
3R	25846177	3R_25846177_SNP [dm3] 3R_30020455_SNP [dm6]	A	C	9.397e^-5	0.371	INTRON Mgat2
2L	12301082	2L_12301082_SNP [dm3] 2L_12301082_SNP [dm6]	T	C	9.407e^-5	0.371	INTRON aret
2L	10072028	2L_10072028_SNP [dm3] 2L_10072028_SNP [dm6]	G	C	9.424e^-5	0.371	INTRON CG44153
2L	9992486	2L_9992486_SNP [dm3] 2L_9992486_SNP [dm6]	C	A	9.443e^-5	0.371	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18250487	3R_18250487_SNP [dm3] 3R_22424765_SNP [dm6]	C	T	9.471e^-5	0.371	UTR_5_PRIME pinta UPSTREAM pinta DOWNSTREAM CG13847
3R	22979461	3R_22979461_SNP [dm3] 3R_27153739_SNP [dm6]	G	A	9.502e^-5	0.371	INTRON Men-b
2R	18059760	2R_18059760_SNP [dm3] 2R_22172255_SNP [dm6]	A	G	9.507e^-5	0.371	SPLICE_SITE_REGION a DOWNSTREAM CG3045 INTRON a
2L	17085832	2L_17085832_DEL [dm3] 2L_17085832_DEL [dm6]	GGAAGCCTTG	G	9.548e^-5	0.371	INTRON CR43819
3L	6793188	3L_6793188_SNP [dm3] 3L_6800088_SNP [dm6]	C	A	9.561e^-5	0.371	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	14834870	2L_14834870_SNP [dm3] 2L_14834870_SNP [dm6]	A	C	9.565e^-5	0.371	INTERGENIC
2L	5080532	2L_5080532_SNP [dm3] 2L_5080532_SNP [dm6]	A	T	9.577e^-5	0.371	INTRON pgant5
X	17958744	X_17958744_SNP [dm3] X_18064711_SNP [dm6]	G	A	9.589e^-5	0.371	NON_SYNONYMOUS_CODING Dhc16F
2L	22132871	2L_22132871_SNP [dm3] 2L_22132871_SNP [dm6]	T	A	9.609e^-5	0.371	DOWNSTREAM CR43241 INTRON CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19859344	2L_19859344_DEL [dm3] 2L_19859344_DEL [dm6]	TG	T	9.660e^-5	0.371	INTRON sick
X	14102983	X_14102983_SNP [dm3] X_14208950_SNP [dm6]	T	A	9.660e^-5	0.371	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13125857	3L_13125857_DEL [dm3] 3L_13132757_DEL [dm6]	TT	T	9.714e^-5	0.372	INTERGENIC
3R	20592047	3R_20592047_SNP [dm3] 3R_24766325_SNP [dm6]	C	G	9.715e^-5	0.372	INTERGENIC
3R	16869063	3R_16869063_DEL [dm3] 3R_21043341_DEL [dm6]	AA	A	9.817e^-5	0.375	UPSTREAM Dhc93AB & 1 other INTERGENIC
3L	5943961	3L_5943961_SNP [dm3] 3L_5950861_SNP [dm6]	C	T	9.863e^-5	0.376	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7788501	2L_7788501_DEL [dm3] 2L_7788501_DEL [dm6]	CATTT	C	9.897e^-5	0.376	INTRON CG7149
3R	18829699	3R_18829699_DEL [dm3] 3R_23003977_DEL [dm6]	AT	A	9.929e^-5	0.376	INTRON CG34375
3L	21136719	3L_21136719_SNP [dm3] 3L_21143619_SNP [dm6]	T	C	9.971e^-5	0.376	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21933210	2L_21933210_SNP [dm3] 2L_21933210_SNP [dm6]	G	A	9.986e^-5	0.376	INTERGENIC
X	7293817	X_7293817_SNP [dm3] X_7399784_SNP [dm6]	G	A	1.001e^-4	0.376	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd
2L	4621171	2L_4621171_SNP [dm3] 2L_4621171_SNP [dm6]	G	T	1.002e^-4	0.376	DOWNSTREAM CR44609 INTERGENIC
3L	8645804	3L_8645804_SNP [dm3] 3L_8652704_SNP [dm6]	G	A	1.002e^-4	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6479644	2L_6479644_DEL [dm3] 2L_6479644_DEL [dm6]	GT	G	1.003e^-4	0.376	INTRON Sec61alpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	7293953	X_7293953_SNP [dm3] X_7399920_SNP [dm6]	T	C	1.010e^-4	0.377	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sbb
X	3765245	X_3765245_DEL [dm3] X_3871212_DEL [dm6]	AA	A	1.010e^-4	0.377	INTRON yin & 1 other
X	5334723	X_5334723_DEL [dm3] X_5440690_DEL [dm6]	AA	A	1.010e^-4	0.377	INTERGENIC
2R	13560105	2R_13560105_DEL [dm3] 2R_17672600_DEL [dm6]	AA	A	1.013e^-4	0.377	UTR_5_PRIME P32 DOWNSTREAM Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	17481255	X_17481255_DEL [dm3] X_17587222_DEL [dm6]	TACAT	T	1.017e^-4	0.377	INTRON CG12991
2L	6476772	2L_6476772_SNP [dm3] 2L_6476772_SNP [dm6]	G	T	1.017e^-4	0.377	UTR_5_PRIME CG9536 DOWNSTREAM Sec61alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25979440	3R_25979440_INS [dm3] 3R_30153718_INS [dm6]	T	TGTA	1.018e^-4	0.377	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	20362891	2R_20362891_INS [dm3] 2R_24475368_INS [dm6]	A	AGTA	1.023e^-4	0.377	UPSTREAM CG16837 DOWNSTREAM CG3494 INTRON CG13579
3L	19203527	3L_19203527_INS [dm3] 3L_19210427_INS [dm6]	A	AA	1.023e^-4	0.377	INTRON fz2
2L	15076185	2L_15076185_SNP [dm3] 2L_15076185_SNP [dm6]	C	T	1.028e^-4	0.378	INTRON CG15270
3R	9814165	3R_9814165_SNP [dm3] 3R_13988443_SNP [dm6]	G	A	1.040e^-4	0.382	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9556409	2R_9556409_INS [dm3] 2R_13668904_INS [dm6]	G	GACCGGGAACCAGAAAACG...	1.044e^-4	0.382	CODON_INSERTION CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26559814	3R_26559814_SNP [dm3] 3R_30734092_SNP [dm6]	T	G	1.045e^-4	0.382	INTERGENIC
3R	18737959	3R_18737959_SNP [dm3] 3R_22912237_SNP [dm6]	T	C	1.046e^-4	0.382	INTRON klg
2L	3501084	2L_3501084_DEL [dm3] 2L_3501084_DEL [dm6]	TTA	T	1.052e^-4	0.383	UTR_3_PRIME tim INTRON tim
2L	1849486	2L_1849486_SNP [dm3] 2L_1849486_SNP [dm6]	T	A	1.058e^-4	0.383	INTRON wry
3R	16996015	3R_16996015_SNP [dm3] 3R_21170293_SNP [dm6]	T	A	1.058e^-4	0.383	INTRON SNF4Agamma
X	15738432	X_15738432_DEL [dm3] X_15844399_DEL [dm6]	GTGCG	G	1.060e^-4	0.383	UPSTREAM CG8578 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	2628627	2L_2628627_SNP [dm3] 2L_2628627_SNP [dm6]	A	G	1.061e^-4	0.383	UPSTREAM CR45705 INTERGENIC
3R	25219015	3R_25219015_SNP [dm3] 3R_29393293_SNP [dm6]	A	G	1.062e^-4	0.383	INTRON Ptp99A
3R	25476006	3R_25476006_DEL [dm3] 3R_29650284_DEL [dm6]	GG	G	1.064e^-4	0.383	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
X	3656985	X_3656985_INS [dm3] X_3762952_INS [dm6]	A	AAA	1.068e^-4	0.383	INTRON tlk
2L	20433681	2L_20433681_SNP [dm3] 2L_20433681_SNP [dm6]	C	T	1.068e^-4	0.383	INTRON CG31688
2R	10500977	2R_10500977_SNP [dm3] 2R_14613472_SNP [dm6]	G	A	1.072e^-4	0.384	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5323943	X_5323943_SNP [dm3] X_5429910_SNP [dm6]	C	T	1.079e^-4	0.384	UTR_5_PRIME CG15784 UPSTREAM CG15784 DOWNSTREAM CR45517
2R	18389363	2R_18389363_DEL [dm3] 2R_22501858_DEL [dm6]	CC	C	1.080e^-4	0.384	INTRON px
2R	10552978	2R_10552978_SNP [dm3] 2R_14665473_SNP [dm6]	T	C	1.081e^-4	0.384	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3L	11654569	3L_11654569_SNP [dm3] 3L_11661469_SNP [dm6]	T	C	1.081e^-4	0.384	INTRON CG32085
3R	25222400	3R_25222400_SNP [dm3] 3R_29396678_SNP [dm6]	G	A	1.084e^-4	0.384	INTRON Ptp99A
2R	15033609	2R_15033609_SNP [dm3] 2R_19146104_SNP [dm6]	C	T	1.085e^-4	0.384	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_inv
2L	7222507	2L_7222507_SNP [dm3] 2L_7222507_SNP [dm6]	C	T	1.087e^-4	0.384	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12513406	3L_12513406_INS [dm3] 3L_12520306_INS [dm6]	A	AGA	1.088e^-4	0.384	UTR_3_PRIME tral DOWNSTREAM tral & 1 other
3R	26838599	3R_26838599_SNP [dm3] 3R_31012877_SNP [dm6]	C	G	1.093e^-4	0.384	INTRON 5-HT7
2R	9082826	2R_9082826_DEL [dm3] 2R_13195321_DEL [dm6]	TTT	T	1.097e^-4	0.384	INTRON Kdm4B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25368309	3R_25368309_SNP [dm3] 3R_29542587_SNP [dm6]	G	A	1.098e^-4	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25486788	3R_25486788_INS [dm3] 3R_29661066_INS [dm6]	G	GCGAG	1.098e^-4	0.384	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	7529775	3R_7529775_DEL [dm3] 3R_11704053_DEL [dm6]	AACATAAAT	A	1.103e^-4	0.384	UTR_5_PRIME I-t
3R	17165416	3R_17165416_DEL [dm3] 3R_21339694_DEL [dm6]	TGTGTGT	T	1.109e^-4	0.384	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
2L	2276396	2L_2276396_SNP [dm3] 2L_2276396_SNP [dm6]	A	T	1.111e^-4	0.384	INTRON CR43753
2L	2276405	2L_2276405_SNP [dm3] 2L_2276405_SNP [dm6]	T	G	1.111e^-4	0.384	INTRON CR43753
3R	2286969	3R_2286969_DEL [dm3] 3R_6461247_DEL [dm6]	ATATA	A	1.112e^-4	0.384	INTERGENIC	transposable element FlyBase
3L	11544120	3L_11544120_SNP [dm3] 3L_11551020_SNP [dm6]	G	A	1.112e^-4	0.384	INTRON Mob2
2L	20761395	2L_20761395_SNP [dm3] 2L_20761395_SNP [dm6]	T	A	1.114e^-4	0.384	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8883935	2L_8883935_SNP [dm3] 2L_8883935_SNP [dm6]	G	T	1.114e^-4	0.384	INTERGENIC
2L	6775757	2L_6775757_SNP [dm3] 2L_6775757_SNP [dm6]	G	T	1.116e^-4	0.384	UTR_5_PRIME CG17378 INTRON CG17378
2L	3954388	2L_3954388_DEL [dm3] 2L_3954388_DEL [dm6]	AA	A	1.118e^-4	0.384	INTRON fred
2R	16405002	2R_16405002_SNP [dm3] 2R_20517497_SNP [dm6]	C	T	1.119e^-4	0.384	INTERGENIC
3R	26707039	3R_26707039_INS [dm3] 3R_30881317_INS [dm6]	A	AGA	1.126e^-4	0.385	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26707048	3R_26707048_INS [dm3] 3R_30881326_INS [dm6]	A	ATAGT	1.126e^-4	0.385	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17585852	2R_17585852_INS [dm3] 2R_21698347_INS [dm6]	A	ATCAGTAA	1.129e^-4	0.385	INTRON HmgZ
2L	5081217	2L_5081217_SNP [dm3] 2L_5081217_SNP [dm6]	A	G	1.134e^-4	0.385	INTRON pgant5
3R	18356628	3R_18356628_SNP [dm3] 3R_22530906_SNP [dm6]	A	G	1.141e^-4	0.385	SYNONYMOUS_CODING CG33093 UPSTREAM CG33099	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25395959	3R_25395959_SNP [dm3] 3R_29570237_SNP [dm6]	T	A	1.143e^-4	0.385	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19766271	2L_19766271_SNP [dm3] 2L_19766271_SNP [dm6]	T	A	1.143e^-4	0.385	UTR_3_PRIME bsh DOWNSTREAM bsh
3R	15512379	3R_15512379_INS [dm3] 3R_19686657_INS [dm6]	A	AA	1.143e^-4	0.385	UPSTREAM Naam INTRON Naam
4	1174442	4_1174442_DEL [dm3] 4_1153816_DEL [dm6]	AGAGTGAAAGCA...	A	1.144e^-4	0.385	INTRON CG32017 & 1 other	transposable element FlyBase
2L	7592056	2L_7592056_DEL [dm3] 2L_7592056_DEL [dm6]	TCGTATTTACT...	A	1.153e^-4	0.385	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20761396	2L_20761396_SNP [dm3] 2L_20761396_SNP [dm6]	C	T	1.154e^-4	0.385	UTR_3_PRIME dia INTRON dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6676605	2L_6676605_INS [dm3] 2L_6676605_INS [dm6]	A	AAA	1.161e^-4	0.385	UTR_5_PRIME cort UPSTREAM cort DOWNSTREAM CG11329
3R	15882866	3R_15882866_SNP [dm3] 3R_20057144_SNP [dm6]	G	A	1.162e^-4	0.385	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18130682	2R_18130682_SNP [dm3] 2R_22243177_SNP [dm6]	G	C	1.162e^-4	0.385	UPSTREAM dve INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26055879	3R_26055879_DEL [dm3] 3R_30230157_DEL [dm6]	TT	T	1.165e^-4	0.385	INTERGENIC
3L	18329829	3L_18329829_INS [dm3] 3L_18336729_INS [dm6]	T	TT	1.167e^-4	0.385	INTERGENIC
3R	26707044	3R_26707044_INS [dm3] 3R_30881322_INS [dm6]	A	ATTCCTTATC	1.169e^-4	0.385	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9495491	3L_9495491_INS [dm3] 3L_9502391_INS [dm6]	T	TAAGGTTT	1.169e^-4	0.385	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	24078635	3R_24078635_SNP [dm3] 3R_28252913_SNP [dm6]	G	A	1.172e^-4	0.385	INTERGENIC
2L	20752343	2L_20752343_SNP [dm3] 2L_20752343_SNP [dm6]	T	C	1.178e^-4	0.385	UPSTREAM Ns4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12454026	2L_12454026_SNP [dm3] 2L_12454026_SNP [dm6]	G	C	1.181e^-4	0.385	UPSTREAM CG5418 EXON CR17024
2L	21284038	2L_21284038_SNP [dm3] 2L_21284038_SNP [dm6]	C	A	1.182e^-4	0.385	EXON Cyp6t2Psi
2L	7798440	2L_7798440_SNP [dm3] 2L_7798440_SNP [dm6]	C	T	1.183e^-4	0.385	NON_SYNONYMOUS_CODING Herp
2L	5935017	2L_5935017_SNP [dm3] 2L_5935017_SNP [dm6]	A	T	1.185e^-4	0.385	INTRON dsf	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	20660824	3R_20660824_SNP [dm3] 3R_24835102_SNP [dm6]	T	C	1.185e^-4	0.385	UPSTREAM CR45216 & 1 other INTRON sosie
3R	12105510	3R_12105510_SNP [dm3] 3R_16279788_SNP [dm6]	C	G	1.186e^-4	0.385	INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	18250807	3R_18250807_SNP [dm3] 3R_22425085_SNP [dm6]	G	A	1.187e^-4	0.385	UPSTREAM pinta DOWNSTREAM CG13847 INTERGENIC
2L	21827866	2L_21827866_SNP [dm3] 2L_21827866_SNP [dm6]	C	T	1.187e^-4	0.385	UPSTREAM tsh INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20667879	3R_20667879_DEL [dm3] 3R_24842157_DEL [dm6]	GTGCATTTCGGCAGTGATTT...	G	1.187e^-4	0.385	UTR_5_PRIME Esp UPSTREAM CG33658
3L	16815654	3L_16815654_SNP [dm3] 3L_16822554_SNP [dm6]	A	G	1.188e^-4	0.385	INTRON CG13024
3L	95159	3L_95159_MNP [dm3] 3L_95159_MNP [dm6]	GCC	AAT	1.190e^-4	0.385	INTERGENIC
2L	3710938	2L_3710938_SNP [dm3] 2L_3710938_SNP [dm6]	G	A	1.192e^-4	0.385	SYNONYMOUS_CODING cutlet DOWNSTREAM CG31955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4702308	2L_4702308_DEL [dm3] 2L_4702308_DEL [dm6]	CT	A	1.192e^-4	0.385	UPSTREAM Taf12L INTRON CG34351
2L	9940631	2L_9940631_SNP [dm3] 2L_9940631_SNP [dm6]	A	G	1.194e^-4	0.385	SPLICE_SITE_REGION CG4619 SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853
3R	10628954	3R_10628954_SNP [dm3] 3R_14803232_SNP [dm6]	C	T	1.195e^-4	0.385	SPLICE_SITE_REGION CG14857 DOWNSTREAM btsz INTRON CG14857	TF binding site mE1_TFBS_cad
3R	10972646	3R_10972646_INS [dm3] 3R_15146924_INS [dm6]	T	TT	1.201e^-4	0.386	UTR_5_PRIME GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3218519	2L_3218519_SNP [dm3] 2L_3218519_SNP [dm6]	G	A	1.202e^-4	0.386	INTERGENIC
2L	22044566	2L_22044566_SNP [dm3] 2L_22044566_SNP [dm6]	A	G	1.204e^-4	0.386	UPSTREAM CG31601 INTERGENIC
2L	2110562	2L_2110562_SNP [dm3] 2L_2110562_SNP [dm6]	T	G	1.207e^-4	0.386	UPSTREAM dpr3 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6775746	2L_6775746_INS [dm3] 2L_6775746_INS [dm6]	T	AAATATAG	1.211e^-4	0.386	UTR_5_PRIME CG17378 INTRON CG17378
2L	5101705	2L_5101705_DEL [dm3] 2L_5101705_DEL [dm6]	GG	G	1.213e^-4	0.386	INTRON Msp300
2L	7142995	2L_7142995_SNP [dm3] 2L_7142995_SNP [dm6]	G	C	1.214e^-4	0.386	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13206050	2R_13206050_DEL [dm3] 2R_17318545_DEL [dm6]	TA	T	1.216e^-4	0.386	INTRON mbl
3R	24878570	3R_24878570_SNP [dm3] 3R_29052848_SNP [dm6]	A	G	1.216e^-4	0.386	SPLICE_SITE_REGION CG11842 DOWNSTREAM CG11841 INTRON CG11842	TF binding site BDTNP1_TFBS_twi
3L	15864259	3L_15864259_SNP [dm3] 3L_15871159_SNP [dm6]	A	G	1.221e^-4	0.386	INTRON pHCl
3R	25210358	3R_25210358_SNP [dm3] 3R_29384636_SNP [dm6]	T	C	1.222e^-4	0.386	INTRON Ptp99A
3R	20652144	3R_20652144_DEL [dm3] 3R_24826422_DEL [dm6]	ATATTTA	A	1.223e^-4	0.386	CODON_DELETION CG43166 UPSTREAM niki DOWNSTREAM RabX4
3L	1962263	3L_1962263_SNP [dm3] 3L_1962263_SNP [dm6]	C	T	1.229e^-4	0.387	SYNONYMOUS_CODING mv UPSTREAM SCOT
3L	18737149	3L_18737149_SNP [dm3] 3L_18744049_SNP [dm6]	G	T	1.239e^-4	0.39	UPSTREAM CG6885 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3R	19572509	3R_19572509_DEL [dm3] 3R_23746787_DEL [dm6]	GAGCCTG	G	1.240e^-4	0.39	INTRON Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21467245	3R_21467245_SNP [dm3] 3R_25641523_SNP [dm6]	A	G	1.245e^-4	0.39	INTRON jigr1
2L	12200054	2L_12200054_SNP [dm3] 2L_12200054_SNP [dm6]	C	T	1.245e^-4	0.39	INTRON aret
2R	1190835	2R_1190835_DEL [dm3] 2R_5303330_DEL [dm6]	TT	T	1.248e^-4	0.39	INTERGENIC
X	2458002	X_2458002_SNP [dm3] X_2563969_SNP [dm6]	G	A	1.251e^-4	0.39	INTRON Pdfr	TF binding site mE1_TFBS_inv
2L	10324711	2L_10324711_SNP [dm3] 2L_10324711_SNP [dm6]	G	A	1.255e^-4	0.39	NON_SYNONYMOUS_CODING CG4995 DOWNSTREAM RnrL
2L	21267059	2L_21267059_DEL [dm3] 2L_21267059_DEL [dm6]	AAGGATTTAGCAAATGTTGC...	TTTTTTTAATTTAATT...	1.256e^-4	0.39	INTRON CG8671
3L	20069538	3L_20069538_SNP [dm3] 3L_20076438_SNP [dm6]	T	A	1.257e^-4	0.39	INTRON sNPF-R
3R	10548806	3R_10548806_SNP [dm3] 3R_14723084_SNP [dm6]	G	T	1.258e^-4	0.39	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	24667230	3R_24667230_SNP [dm3] 3R_28841508_SNP [dm6]	G	T	1.264e^-4	0.391	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2R	4867140	2R_4867140_SNP [dm3] 2R_8979635_SNP [dm6]	T	C	1.266e^-4	0.391	INTRON CG8213
2L	7253312	2L_7253312_INS [dm3] 2L_7253312_INS [dm6]	T	TTCTATTT	1.277e^-4	0.391	UPSTREAM CG13786 INTERGENIC
3R	25463158	3R_25463158_SNP [dm3] 3R_29637436_SNP [dm6]	G	A	1.277e^-4	0.391	INTRON Dop1R2
3L	20073612	3L_20073612_SNP [dm3] 3L_20080512_SNP [dm6]	A	T	1.278e^-4	0.391	INTRON sNPF-R
X	12715555	X_12715555_INS [dm3] X_12821522_INS [dm6]	A	ATGTA	1.278e^-4	0.391	INTRON Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7899276	2L_7899276_DEL [dm3] 2L_7899276_DEL [dm6]	AAAATATACT	A	1.280e^-4	0.391	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23593261	3R_23593261_SNP [dm3] 3R_27767539_SNP [dm6]	T	A	1.282e^-4	0.391	DOWNSTREAM CG34353 INTERGENIC
3L	6359972	3L_6359972_SNP [dm3] 3L_6366872_SNP [dm6]	A	T	1.282e^-4	0.391	INTERGENIC
2L	2637971	2L_2637971_SNP [dm3] 2L_2637971_SNP [dm6]	A	G	1.284e^-4	0.391	INTERGENIC
2R	1251043	2R_1251043_DEL [dm3] 2R_5363538_DEL [dm6]	CCAATATAAGATATTCTCCA...	C	1.286e^-4	0.391	UPSTREAM CG10417 INTRON CR42646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1540915	2R_1540915_DEL [dm3] 2R_5653410_DEL [dm6]	TTTATTTTAGCTATTTTCAT...	T	1.286e^-4	0.391	UPSTREAM CG1344 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9771477	2R_9771477_DEL [dm3] 2R_13883972_DEL [dm6]	ATTAGAA	A	1.293e^-4	0.391	INTRON shot
3R	13799776	3R_13799776_INS [dm3] 3R_17974054_INS [dm6]	G	GAAAAGG	1.294e^-4	0.391	INTRON cpo
2L	1611892	2L_1611892_SNP [dm3] 2L_1611892_SNP [dm6]	A	C	1.296e^-4	0.391	UPSTREAM CG31935 DOWNSTREAM RFeSP INTRON CG14352	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10030887	2R_10030887_SNP [dm3] 2R_14143382_SNP [dm6]	T	G	1.297e^-4	0.391	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	18350351	3R_18350351_SNP [dm3] 3R_22524629_SNP [dm6]	A	G	1.298e^-4	0.391	INTRON CG5346	TF binding site mE1_TFBS_sens
2L	3785662	2L_3785662_SNP [dm3] 2L_3785662_SNP [dm6]	T	A	1.304e^-4	0.392	UPSTREAM CG31958 DOWNSTREAM CG31960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	16762366	2R_16762366_SNP [dm3] 2R_20874861_SNP [dm6]	G	T	1.307e^-4	0.392	SYNONYMOUS_CODING Ipk1 INTRON Ipk1
3L	20071523	3L_20071523_SNP [dm3] 3L_20078423_SNP [dm6]	T	C	1.308e^-4	0.392	INTRON sNPF-R
2R	18341971	2R_18341971_SNP [dm3] 2R_22454466_SNP [dm6]	A	G	1.309e^-4	0.392	UPSTREAM CG10384 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13548884	2R_13548884_SNP [dm3] 2R_17661379_SNP [dm6]	G	C	1.310e^-4	0.392	INTRON CCHa1-R
2L	12282959	2L_12282959_SNP [dm3] 2L_12282959_SNP [dm6]	T	G	1.317e^-4	0.393	INTRON aret
3R	22050782	3R_22050782_INS [dm3] 3R_26225060_INS [dm6]	C	CGTATTC	1.317e^-4	0.393	INTERGENIC
2L	17403243	2L_17403243_DEL [dm3] 2L_17403243_DEL [dm6]	TAAAA	CGGC	1.320e^-4	0.393	INTRON CLIP-190
2R	10675627	2R_10675627_DEL [dm3] 2R_14788122_DEL [dm6]	GG	G	1.322e^-4	0.393	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14380650	3L_14380650_SNP [dm3] 3L_14387550_SNP [dm6]	G	A	1.327e^-4	0.393	INTERGENIC
2R	18125696	2R_18125696_SNP [dm3] 2R_22238191_SNP [dm6]	T	A	1.329e^-4	0.393	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22133171	2L_22133171_SNP [dm3] 2L_22133171_SNP [dm6]	C	A	1.332e^-4	0.393	DOWNSTREAM CR43241 INTRON CG42748	TF binding site BDTNP1_TFBS_dl
3R	24664576	3R_24664576_SNP [dm3] 3R_28838854_SNP [dm6]	C	T	1.333e^-4	0.393	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18284290	2R_18284290_SNP [dm3] 2R_22396785_SNP [dm6]	A	G	1.336e^-4	0.393	INTRON babos	TF binding site BDTNP1_TFBS_dl
2R	7609033	2R_7609033_SNP [dm3] 2R_11721528_SNP [dm6]	A	G	1.338e^-4	0.393	INTRON pyr
3R	16996100	3R_16996100_SNP [dm3] 3R_21170378_SNP [dm6]	G	T	1.341e^-4	0.393	INTRON SNF4Agamma
3L	12044469	3L_12044469_SNP [dm3] 3L_12051369_SNP [dm6]	G	T	1.343e^-4	0.393	INTRON rols
3R	24664506	3R_24664506_SNP [dm3] 3R_28838784_SNP [dm6]	A	G	1.348e^-4	0.393	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11544955	3L_11544955_SNP [dm3] 3L_11551855_SNP [dm6]	G	A	1.355e^-4	0.393	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	6293700	3L_6293700_SNP [dm3] 3L_6300600_SNP [dm6]	T	A	1.357e^-4	0.393	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12118671	2L_12118671_SNP [dm3] 2L_12118671_SNP [dm6]	G	C	1.357e^-4	0.393	INTRON CG17211	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12118687	2L_12118687_SNP [dm3] 2L_12118687_SNP [dm6]	A	G	1.357e^-4	0.393	INTRON CG17211	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12128467	2L_12128467_SNP [dm3] 2L_12128467_SNP [dm6]	G	A	1.359e^-4	0.393	INTRON CG17211
2L	8883965	2L_8883965_DEL [dm3] 2L_8883965_DEL [dm6]	CTG	C	1.360e^-4	0.393	INTERGENIC
3R	12093599	3R_12093599_SNP [dm3] 3R_16267877_SNP [dm6]	C	T	1.362e^-4	0.393	NON_SYNONYMOUS_CODING Mst89B DOWNSTREAM asun & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16120588	2R_16120588_SNP [dm3] 2R_20233083_SNP [dm6]	G	A	1.367e^-4	0.393	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2L	10534456	2L_10534456_SNP [dm3] 2L_10534456_SNP [dm6]	G	A	1.370e^-4	0.393	UTR_5_PRIME CG18302 DOWNSTREAM CG18301
3R	19626193	3R_19626193_SNP [dm3] 3R_23800471_SNP [dm6]	C	T	1.371e^-4	0.393	SYNONYMOUS_CODING mbc
2L	14228977	2L_14228977_SNP [dm3] 2L_14228977_SNP [dm6]	G	T	1.372e^-4	0.393	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13548891	2R_13548891_SNP [dm3] 2R_17661386_SNP [dm6]	C	A	1.372e^-4	0.393	INTRON CCHa1-R
3R	22529081	3R_22529081_SNP [dm3] 3R_26703359_SNP [dm6]	T	G	1.372e^-4	0.393	INTRON amon
2L	4834522	2L_4834522_SNP [dm3] 2L_4834522_SNP [dm6]	C	T	1.374e^-4	0.393	UPSTREAM Ir25a DOWNSTREAM tank INTRON Ir25a
2L	6486647	2L_6486647_SNP [dm3] 2L_6486647_SNP [dm6]	T	C	1.374e^-4	0.393	SYNONYMOUS_CODING DLP DOWNSTREAM KFase
2L	6707121	2L_6707121_SNP [dm3] 2L_6707121_SNP [dm6]	A	T	1.375e^-4	0.393	INTRON Tsp
2L	18876925	2L_18876925_DEL [dm3] 2L_18876925_DEL [dm6]	TTTTCAAGCACCCACTA...	G	1.379e^-4	0.394	INTRON tup	TF binding site BDTNP1_TFBS_da
X	15023659	X_15023659_INS [dm3] X_15129626_INS [dm6]	AA	TTT	1.381e^-4	0.394	INTRON drd
2L	6708831	2L_6708831_SNP [dm3] 2L_6708831_SNP [dm6]	G	A	1.383e^-4	0.394	START_GAINED Tsp UTR_5_PRIME Tsp UPSTREAM Tsp INTRON Tsp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13538078	2R_13538078_SNP [dm3] 2R_17650573_SNP [dm6]	T	C	1.385e^-4	0.394	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21441876	X_21441876_SNP [dm3] X_21570849_SNP [dm6]	T	A	1.391e^-4	0.395	INTERGENIC
2R	10553066	2R_10553066_SNP [dm3] 2R_14665561_SNP [dm6]	C	G	1.394e^-4	0.395	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
2L	16212987	2L_16212987_SNP [dm3] 2L_16212987_SNP [dm6]	T	C	1.394e^-4	0.395	SYNONYMOUS_CODING CG31819	TF binding site BDTNP1_TFBS_twi
2R	18282220	2R_18282220_SNP [dm3] 2R_22394715_SNP [dm6]	C	T	1.400e^-4	0.395	SYNONYMOUS_CODING babos DOWNSTREAM CG13506
3R	25222294	3R_25222294_SNP [dm3] 3R_29396572_SNP [dm6]	C	T	1.404e^-4	0.395	INTRON Ptp99A
2L	9991864	2L_9991864_SNP [dm3] 2L_9991864_SNP [dm6]	G	A	1.404e^-4	0.395	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26707073	3R_26707073_SNP [dm3] 3R_30881351_SNP [dm6]	T	C	1.406e^-4	0.395	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26707154	3R_26707154_SNP [dm3] 3R_30881432_SNP [dm6]	G	A	1.409e^-4	0.395	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC
2R	7152848	2R_7152848_SNP [dm3] 2R_11265343_SNP [dm6]	C	T	1.411e^-4	0.395	NON_SYNONYMOUS_CODING Cpr47Ee	TF binding site mE1_TFBS_chinmo
3R	23915084	3R_23915084_SNP [dm3] 3R_28089362_SNP [dm6]	T	G	1.412e^-4	0.395	UTR_3_PRIME CG34362
3R	20660703	3R_20660703_SNP [dm3] 3R_24834981_SNP [dm6]	T	C	1.413e^-4	0.395	UPSTREAM CR45216 & 1 other INTRON sosie
2L	12306680	2L_12306680_SNP [dm3] 2L_12306680_SNP [dm6]	G	A	1.423e^-4	0.395	INTRON aret
3R	18829734	3R_18829734_DEL [dm3] 3R_23004012_DEL [dm6]	TGTAT	T	1.424e^-4	0.395	INTRON CG34375
2L	1825932	2L_1825932_SNP [dm3] 2L_1825932_SNP [dm6]	G	A	1.424e^-4	0.395	INTRON CG31664
2L	4618062	2L_4618062_DEL [dm3] 2L_4618062_DEL [dm6]	TTCTGCAT	T	1.426e^-4	0.395	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9064344	X_9064344_SNP [dm3] X_9170311_SNP [dm6]	T	C	1.426e^-4	0.395	SYNONYMOUS_CODING mei-P26
3L	17025857	3L_17025857_DEL [dm3] 3L_17032757_DEL [dm6]	CTC	C	1.428e^-4	0.395	UPSTREAM Ilp8 & 1 other DOWNSTREAM CR43250 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12134869	2R_12134869_SNP [dm3] 2R_16247364_SNP [dm6]	C	A	1.432e^-4	0.395	INTRON CngA
2L	8885421	2L_8885421_SNP [dm3] 2L_8885421_SNP [dm6]	G	A	1.433e^-4	0.395	INTERGENIC
2L	20797786	2L_20797786_SNP [dm3] 2L_20797786_SNP [dm6]	C	T	1.437e^-4	0.395	START_GAINED CG9328 UTR_5_PRIME CG9328 UPSTREAM vari	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_Trl
2L	12351161	2L_12351161_SNP [dm3] 2L_12351161_SNP [dm6]	C	T	1.438e^-4	0.395	INTRON bru-2
2L	5196705	2L_5196705_SNP [dm3] 2L_5196705_SNP [dm6]	A	C	1.443e^-4	0.395	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	12256648	2L_12256648_SNP [dm3] 2L_12256648_SNP [dm6]	C	A	1.443e^-4	0.395	INTRON aret
2R	19220639	2R_19220639_SNP [dm3] 2R_23333116_SNP [dm6]	T	A	1.445e^-4	0.395	INTERGENIC
2L	17230298	2L_17230298_DEL [dm3] 2L_17230298_DEL [dm6]	TGA	T	1.445e^-4	0.395	INTRON beat-IIIc
2R	3019719	2R_3019719_DEL [dm3] 2R_7132214_DEL [dm6]	TA	T	1.448e^-4	0.395	UPSTREAM Cyp9b2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	3019722	2R_3019722_SNP [dm3] 2R_7132217_SNP [dm6]	G	A	1.448e^-4	0.395	UPSTREAM Cyp9b2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19122890	3R_19122890_SNP [dm3] 3R_23297168_SNP [dm6]	C	T	1.449e^-4	0.395	INTRON pnt
2L	12521039	2L_12521039_SNP [dm3] 2L_12521039_SNP [dm6]	A	T	1.450e^-4	0.395	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12267144	2R_12267144_INS [dm3] 2R_16379639_INS [dm6]	T	TGAAAGGATGTTGT...	1.456e^-4	0.396	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	20625096	3L_20625096_DEL [dm3] 3L_20631996_DEL [dm6]	TCGAAA	T	1.462e^-4	0.396	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15240987	3R_15240987_SNP [dm3] 3R_19415265_SNP [dm6]	G	T	1.465e^-4	0.396	INTRON CG31221
2R	7300501	2R_7300501_SNP [dm3] 2R_11412996_SNP [dm6]	G	T	1.466e^-4	0.396	INTRON Drip
2L	20827629	2L_20827629_SNP [dm3] 2L_20827629_SNP [dm6]	G	A	1.469e^-4	0.396	UTR_3_PRIME CG9331
2L	5561911	2L_5561911_DEL [dm3] 2L_5561911_DEL [dm6]	ATACTTTAAGA...	A	1.472e^-4	0.396	INTRON GluRIIB
2R	16186150	2R_16186150_SNP [dm3] 2R_20298645_SNP [dm6]	C	T	1.473e^-4	0.396	INTERGENIC
2L	18624715	2L_18624715_SNP [dm3] 2L_18624715_SNP [dm6]	C	A	1.474e^-4	0.396	INTRON MESR3
3L	13211365	3L_13211365_SNP [dm3] 3L_13218265_SNP [dm6]	A	T	1.478e^-4	0.396	DOWNSTREAM CR43914 EXON CR45098
2L	2086814	2L_2086814_SNP [dm3] 2L_2086814_SNP [dm6]	A	G	1.479e^-4	0.396	INTRON dpr3
3L	8812504	3L_8812504_INS [dm3] 3L_8819404_INS [dm6]	C	TTGGTTGG	1.479e^-4	0.396	INTERGENIC
X	14298804	X_14298804_SNP [dm3] X_14404771_SNP [dm6]	A	T	1.481e^-4	0.396	INTRON dpr8
2L	1782654	2L_1782654_SNP [dm3] 2L_1782654_SNP [dm6]	G	A	1.484e^-4	0.397	INTERGENIC	regulatory region REDfly_CRMs
3R	26559845	3R_26559845_SNP [dm3] 3R_30734123_SNP [dm6]	T	C	1.491e^-4	0.397	INTERGENIC
2L	7875085	2L_7875085_DEL [dm3] 2L_7875085_DEL [dm6]	AGAAATGCAAACA...	A	1.492e^-4	0.397	INTRON spz3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3440878	2L_3440878_SNP [dm3] 2L_3440878_SNP [dm6]	A	T	1.494e^-4	0.397	INTERGENIC
X	9064331	X_9064331_SNP [dm3] X_9170298_SNP [dm6]	C	T	1.495e^-4	0.397	SPLICE_SITE_REGION mei-P26 INTRON mei-P26
2R	9482143	2R_9482143_SNP [dm3] 2R_13594638_SNP [dm6]	C	T	1.502e^-4	0.398	SYNONYMOUS_CODING CG6197	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	10312465	3R_10312465_SNP [dm3] 3R_14486743_SNP [dm6]	A	C	1.502e^-4	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8720401	X_8720401_DEL [dm3] X_8826368_DEL [dm6]	TGGT	T	1.504e^-4	0.398	INTERGENIC
2L	1821840	2L_1821840_SNP [dm3] 2L_1821840_SNP [dm6]	G	T	1.507e^-4	0.398	SYNONYMOUS_CODING CG31933
X	17214712	X_17214712_SNP [dm3] X_17320679_SNP [dm6]	G	T	1.513e^-4	0.398	INTRON B-H2
2R	17827286	2R_17827286_DEL [dm3] 2R_21939781_DEL [dm6]	TC	A	1.516e^-4	0.398	INTRON Fili
2L	8319053	2L_8319053_DEL [dm3] 2L_8319053_DEL [dm6]	TC	T	1.519e^-4	0.398	INTRON mtsh
2L	6715201	2L_6715201_DEL [dm3] 2L_6715201_DEL [dm6]	TT	T	1.522e^-4	0.398	UTR_5_PRIME AkhR INTRON AkhR
X	17958732	X_17958732_SNP [dm3] X_18064699_SNP [dm6]	A	C	1.530e^-4	0.398	NON_SYNONYMOUS_CODING Dhc16F
3R	17529910	3R_17529910_SNP [dm3] 3R_21704188_SNP [dm6]	T	C	1.530e^-4	0.398	INTRON CG31176
3R	22519980	3R_22519980_SNP [dm3] 3R_26694258_SNP [dm6]	G	A	1.531e^-4	0.398	UPSTREAM TwdlQ INTERGENIC
2R	13209715	2R_13209715_SNP [dm3] 2R_17322210_SNP [dm6]	T	C	1.532e^-4	0.398	INTRON mbl
2R	9758999	2R_9758999_SNP [dm3] 2R_13871494_SNP [dm6]	T	G	1.534e^-4	0.398	INTRON shot	TF binding site mE1_TFBS_cad
2R	12367468	2R_12367468_INS [dm3] 2R_16479963_INS [dm6]	C	CA	1.534e^-4	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26710239	3R_26710239_SNP [dm3] 3R_30884517_SNP [dm6]	T	C	1.534e^-4	0.398	SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad
2R	6771897	2R_6771897_SNP [dm3] 2R_10884392_SNP [dm6]	G	C	1.536e^-4	0.398	SYNONYMOUS_CODING CG18003 UPSTREAM CG18004
2L	20883382	2L_20883382_SNP [dm3] 2L_20883382_SNP [dm6]	G	C	1.539e^-4	0.398	INTRON sky & 1 other
2L	12265022	2L_12265022_SNP [dm3] 2L_12265022_SNP [dm6]	T	G	1.539e^-4	0.398	INTRON aret
2R	959565	2R_959565_DEL [dm3] 2R_5072060_DEL [dm6]	GCCACCAGT	G	1.541e^-4	0.398	INTERGENIC
2R	959576	2R_959576_SNP [dm3] 2R_5072071_SNP [dm6]	A	G	1.541e^-4	0.398	INTERGENIC
3L	15654690	3L_15654690_SNP [dm3] 3L_15661590_SNP [dm6]	T	C	1.545e^-4	0.398	UPSTREAM CG43082 & 1 other INTRON Eig71Ek
3R	14175234	3R_14175234_SNP [dm3] 3R_18349512_SNP [dm6]	A	C	1.546e^-4	0.398	INTRON CG15803
3L	721311	3L_721311_SNP [dm3] 3L_721311_SNP [dm6]	G	A	1.551e^-4	0.398	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12552122	2L_12552122_INS [dm3] 2L_12552122_INS [dm6]	A	AA	1.555e^-4	0.398	INTERGENIC
3L	14145217	3L_14145217_SNP [dm3] 3L_14152117_SNP [dm6]	A	G	1.556e^-4	0.398	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4718056	2L_4718056_SNP [dm3] 2L_4718056_SNP [dm6]	T	C	1.558e^-4	0.398	INTRON CG34351
2L	3778244	2L_3778244_DEL [dm3] 2L_3778244_DEL [dm6]	AA	A	1.559e^-4	0.398	UPSTREAM bowl INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	6534206	2R_6534206_SNP [dm3] 2R_10646701_SNP [dm6]	C	A	1.562e^-4	0.398	NON_SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
2L	12428135	2L_12428135_SNP [dm3] 2L_12428135_SNP [dm6]	G	C	1.563e^-4	0.398	SPLICE_SITE_REGION CG6388 UPSTREAM CG5446 INTRON CG6388	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2638381	2L_2638381_SNP [dm3] 2L_2638381_SNP [dm6]	C	T	1.564e^-4	0.398	INTERGENIC
2L	13109843	2L_13109843_SNP [dm3] 2L_13109843_SNP [dm6]	C	A	1.571e^-4	0.398	DOWNSTREAM CG5142 INTERGENIC
2L	2027232	2L_2027232_SNP [dm3] 2L_2027232_SNP [dm6]	A	G	1.574e^-4	0.398	INTRON CG4238	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26837891	3R_26837891_SNP [dm3] 3R_31012169_SNP [dm6]	C	T	1.577e^-4	0.398	INTRON 5-HT7
3L	5173120	3L_5173120_SNP [dm3] 3L_5180020_SNP [dm6]	A	G	1.577e^-4	0.398	INTRON shep
3L	15785290	3L_15785290_SNP [dm3] 3L_15792190_SNP [dm6]	G	A	1.578e^-4	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7224298	2L_7224298_SNP [dm3] 2L_7224298_SNP [dm6]	G	C	1.579e^-4	0.398	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	1553977	2L_1553977_SNP [dm3] 2L_1553977_SNP [dm6]	T	C	1.579e^-4	0.398	INTERGENIC
3R	17875875	3R_17875875_INS [dm3] 3R_22050153_INS [dm6]	A	AA	1.579e^-4	0.398	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3714629	2L_3714629_SNP [dm3] 2L_3714629_SNP [dm6]	G	T	1.587e^-4	0.399	INTRON CG2818	TF binding site mE1_TFBS_sens
2L	12306645	2L_12306645_DEL [dm3] 2L_12306645_DEL [dm6]	TCTGTAGGATTGTG...	T	1.588e^-4	0.399	INTRON aret
2L	12454978	2L_12454978_DEL [dm3] 2L_12454978_DEL [dm6]	ACTTCAATTTGATCA...	A	1.591e^-4	0.399	DOWNSTREAM bun & 1 other INTERGENIC
3R	18588833	3R_18588833_SNP [dm3] 3R_22763111_SNP [dm6]	T	A	1.593e^-4	0.399	NON_SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12361993	2R_12361993_SNP [dm3] 2R_16474488_SNP [dm6]	G	C	1.601e^-4	0.4	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16775661	2L_16775661_DEL [dm3] 2L_16775661_DEL [dm6]	CTAA	C	1.601e^-4	0.4	INTRON Mhc
2R	10038925	2R_10038925_SNP [dm3] 2R_14151420_SNP [dm6]	C	T	1.611e^-4	0.402	SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5971493	2R_5971493_SNP [dm3] 2R_10083988_SNP [dm6]	T	A	1.614e^-4	0.402	UTR_3_PRIME egr
2R	18398355	2R_18398355_SNP [dm3] 2R_22510850_SNP [dm6]	A	G	1.617e^-4	0.402	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	1146589	2R_1146589_SNP [dm3] 2R_5259084_SNP [dm6]	A	G	1.620e^-4	0.402	UTR_5_PRIME d4	transposable element FlyBase
2R	1144829	2R_1144829_SNP [dm3] 2R_5257324_SNP [dm6]	T	C	1.624e^-4	0.402	INTERGENIC
3R	12139523	3R_12139523_SNP [dm3] 3R_16313801_SNP [dm6]	C	A	1.625e^-4	0.402	INTRON Sulf1	TF binding site mE1_TFBS_cad
3R	22671449	3R_22671449_SNP [dm3] 3R_26845727_SNP [dm6]	A	C	1.628e^-4	0.402	INTRON Lerp
3R	24743357	3R_24743357_SNP [dm3] 3R_28917635_SNP [dm6]	A	T	1.630e^-4	0.402	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10312844	3R_10312844_SNP [dm3] 3R_14487122_SNP [dm6]	A	G	1.633e^-4	0.402	INTERGENIC
3R	26707100	3R_26707100_SNP [dm3] 3R_30881378_SNP [dm6]	A	T	1.635e^-4	0.402	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20522394	2L_20522394_INS [dm3] 2L_20522394_INS [dm6]	G	GTCCAAATGAAAATAAAATA...	1.640e^-4	0.402	INTERGENIC
2L	19766353	2L_19766353_SNP [dm3] 2L_19766353_SNP [dm6]	G	A	1.643e^-4	0.402	UTR_3_PRIME bsh
2L	3731205	2L_3731205_DEL [dm3] 2L_3731205_DEL [dm6]	CTA	C	1.644e^-4	0.402	INTRON CG10019
3L	14380597	3L_14380597_SNP [dm3] 3L_14387497_SNP [dm6]	A	C	1.645e^-4	0.402	INTERGENIC
2L	8593904	2L_8593904_SNP [dm3] 2L_8593904_SNP [dm6]	C	A	1.646e^-4	0.402	INTRON Sema-1a & 1 other
2L	2822837	2L_2822837_DEL [dm3] 2L_2822837_DEL [dm6]	TGAGT	T	1.647e^-4	0.402	DOWNSTREAM CG3123 INTRON Duox
2L	2757966	2L_2757966_SNP [dm3] 2L_2757966_SNP [dm6]	C	G	1.648e^-4	0.402	UTR_3_PRIME Bacc DOWNSTREAM Snapin & 2 others EXON CR44772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	18552799	2R_18552799_DEL [dm3] 2R_22665294_DEL [dm6]	GTGTT	G	1.648e^-4	0.402	UPSTREAM CG42867 DOWNSTREAM CG4250 & 1 other INTERGENIC
3R	2242453	3R_2242453_SNP [dm3] 3R_6416731_SNP [dm6]	T	A	1.654e^-4	0.403	INTRON gpp
2L	3725084	2L_3725084_SNP [dm3] 2L_3725084_SNP [dm6]	G	A	1.654e^-4	0.403	UTR_3_PRIME Shaw INTRON Shaw
3L	12107232	3L_12107232_SNP [dm3] 3L_12114132_SNP [dm6]	G	C	1.656e^-4	0.403	INTERGENIC
X	16326981	X_16326981_INS [dm3] X_16432948_INS [dm6]	T	TATGTCGATATATTTTCCAC...	1.659e^-4	0.403	INTRON hang
3R	26707151	3R_26707151_SNP [dm3] 3R_30881429_SNP [dm6]	G	A	1.661e^-4	0.403	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC
2R	17229184	2R_17229184_INS [dm3] 2R_21341679_INS [dm6]	G	GG	1.666e^-4	0.403	UTR_3_PRIME dom UPSTREAM CG15666
2R	16646417	2R_16646417_DEL [dm3] 2R_20758912_DEL [dm6]	CA	C	1.668e^-4	0.403	INTERGENIC
2L	12199438	2L_12199438_SNP [dm3] 2L_12199438_SNP [dm6]	T	A	1.668e^-4	0.403	INTRON aret
4	1075983	4_1075983_SNP [dm3] 4_1055357_SNP [dm6]	A	T	1.671e^-4	0.403	INTERGENIC
3L	4174309	3L_4174309_SNP [dm3] 3L_4174309_SNP [dm6]	C	T	1.671e^-4	0.403	SYNONYMOUS_CODING CG18675 DOWNSTREAM Ero1L & 1 other	TF binding site mE1_TFBS_sens
2L	12306660	2L_12306660_SNP [dm3] 2L_12306660_SNP [dm6]	A	C	1.674e^-4	0.403	INTRON aret
3R	25222436	3R_25222436_SNP [dm3] 3R_29396714_SNP [dm6]	G	A	1.674e^-4	0.403	INTRON Ptp99A
2L	3580563	2L_3580563_SNP [dm3] 2L_3580563_SNP [dm6]	G	C	1.680e^-4	0.403	UTR_5_PRIME sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11479286	3L_11479286_SNP [dm3] 3L_11486186_SNP [dm6]	A	T	1.682e^-4	0.403	INTERGENIC
2L	7117805	2L_7117805_SNP [dm3] 2L_7117805_SNP [dm6]	A	G	1.684e^-4	0.403	INTRON Pvf3
3L	8412763	3L_8412763_DEL [dm3] 3L_8419663_DEL [dm6]	GTG	G	1.686e^-4	0.403	INTRON CG32354
X	8635766	X_8635766_SNP [dm3] X_8741733_SNP [dm6]	G	T	1.694e^-4	0.405	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7294007	X_7294007_SNP [dm3] X_7399974_SNP [dm6]	G	A	1.697e^-4	0.405	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sbb
3R	7303984	3R_7303984_SNP [dm3] 3R_11478262_SNP [dm6]	G	T	1.705e^-4	0.406	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24681140	3R_24681140_SNP [dm3] 3R_28855418_SNP [dm6]	T	A	1.715e^-4	0.406	INTRON spg & 1 other
2R	1148450	2R_1148450_DEL [dm3] 2R_5260945_DEL [dm6]	TT	T	1.715e^-4	0.406	INTRON d4	transposable element FlyBase
2L	5080570	2L_5080570_SNP [dm3] 2L_5080570_SNP [dm6]	G	T	1.715e^-4	0.406	INTRON pgant5
X	19504387	X_19504387_DEL [dm3] X_19610354_DEL [dm6]	AA	A	1.717e^-4	0.406	INTRON CG14207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8076397	3L_8076397_SNP [dm3] 3L_8083297_SNP [dm6]	A	G	1.717e^-4	0.406	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
2L	4709217	2L_4709217_SNP [dm3] 2L_4709217_SNP [dm6]	A	G	1.717e^-4	0.406	INTRON CG34351
2L	6855505	2L_6855505_SNP [dm3] 2L_6855505_SNP [dm6]	A	G	1.724e^-4	0.407	INTRON l_2_k09022	TF binding site mE1_TFBS_cad
3R	20475902	3R_20475902_SNP [dm3] 3R_24650180_SNP [dm6]	T	A	1.728e^-4	0.408	UTR_5_PRIME ash2 UPSTREAM puf & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	791779	3R_791779_DEL [dm3] 3R_4966057_DEL [dm6]	CCTAATTTATTGCGTATTAA...	C	1.730e^-4	0.408	INTRON CG1124	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	1598068	2R_1598068_INS [dm3] 2R_5710563_INS [dm6]	A	AA	1.735e^-4	0.408	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2381128	2L_2381128_SNP [dm3] 2L_2381128_SNP [dm6]	A	T	1.743e^-4	0.41	UTR_5_PRIME Eogt DOWNSTREAM Atxn7 INTRON Eogt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12262682	3L_12262682_SNP [dm3] 3L_12269582_SNP [dm6]	C	T	1.747e^-4	0.41	UTR_3_PRIME CG32100 & 1 other DOWNSTREAM Pbgs
X	16722668	X_16722668_SNP [dm3] X_16828635_SNP [dm6]	A	G	1.750e^-4	0.41	UPSTREAM CG13004 INTRON CG13004
2L	7222939	2L_7222939_SNP [dm3] 2L_7222939_SNP [dm6]	T	C	1.753e^-4	0.41	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	2075830	2L_2075830_SNP [dm3] 2L_2075830_SNP [dm6]	A	G	1.760e^-4	0.412	INTRON dpr3
3R	20370681	3R_20370681_SNP [dm3] 3R_24544959_SNP [dm6]	A	G	1.784e^-4	0.414	UTR_5_PRIME Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18424149	2R_18424149_SNP [dm3] 2R_22536644_SNP [dm6]	A	C	1.784e^-4	0.414	SYNONYMOUS_CODING px
2L	4782620	2L_4782620_DEL [dm3] 2L_4782620_DEL [dm6]	GGA	G	1.787e^-4	0.414	INTRON CG15630
2L	20798188	2L_20798188_DEL [dm3] 2L_20798188_DEL [dm6]	CAGCAACTAGCAACAAC...	C	1.794e^-4	0.414	UTR_5_PRIME CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7118063	2L_7118063_SNP [dm3] 2L_7118063_SNP [dm6]	G	A	1.794e^-4	0.414	INTRON Pvf3
3L	1829237	3L_1829237_SNP [dm3] 3L_1829237_SNP [dm6]	A	T	1.802e^-4	0.414	UPSTREAM Cpr62Ba INTRON Cpr62Ba
3R	14785872	3R_14785872_SNP [dm3] 3R_18960150_SNP [dm6]	C	G	1.803e^-4	0.414	INTRON CG42613 & 1 other
3L	1824462	3L_1824462_SNP [dm3] 3L_1824462_SNP [dm6]	G	T	1.804e^-4	0.414	SYNONYMOUS_CODING Cpr62Ba
2R	18000485	2R_18000485_SNP [dm3] 2R_22112980_SNP [dm6]	C	T	1.806e^-4	0.414	UPSTREAM CG30280 & 1 other INTRON Vrp1
3L	12471824	3L_12471824_SNP [dm3] 3L_12478724_SNP [dm6]	A	G	1.814e^-4	0.414	INTRON CG10663
2R	6254991	2R_6254991_SNP [dm3] 2R_10367486_SNP [dm6]	C	T	1.814e^-4	0.414	INTRON CG42732
2R	16781121	2R_16781121_SNP [dm3] 2R_20893616_SNP [dm6]	T	C	1.815e^-4	0.414	INTRON otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7250782	2L_7250782_SNP [dm3] 2L_7250782_SNP [dm6]	G	T	1.817e^-4	0.414	NON_SYNONYMOUS_CODING CG13786
2L	4618201	2L_4618201_SNP [dm3] 2L_4618201_SNP [dm6]	A	T	1.819e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3598063	2L_3598063_SNP [dm3] 2L_3598063_SNP [dm6]	C	T	1.829e^-4	0.414	INTERGENIC
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	1.829e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9143253	2R_9143253_DEL [dm3] 2R_13255748_DEL [dm6]	AA	A	1.830e^-4	0.414	UPSTREAM CR44343 & 1 other INTERGENIC
2L	3636984	2L_3636984_SNP [dm3] 2L_3636984_SNP [dm6]	C	A	1.831e^-4	0.414	DOWNSTREAM mir-4972 INTRON for EXON mir-4972
2L	10544428	2L_10544428_SNP [dm3] 2L_10544428_SNP [dm6]	G	C	1.836e^-4	0.414	UPSTREAM CR44618 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6805874	2L_6805874_DEL [dm3] 2L_6805874_DEL [dm6]	TTG	A	1.837e^-4	0.414	UPSTREAM CG17375 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	14880277	3R_14880277_SNP [dm3] 3R_19054555_SNP [dm6]	G	A	1.840e^-4	0.414	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6525495	2L_6525495_SNP [dm3] 2L_6525495_SNP [dm6]	C	A	1.840e^-4	0.414	SYNONYMOUS_CODING CG31637
2L	8265427	2L_8265427_DEL [dm3] 2L_8265427_DEL [dm6]	TG	C	1.840e^-4	0.414	UTR_5_PRIME Btk29A INTRON Btk29A
2L	14803636	2L_14803636_SNP [dm3] 2L_14803636_SNP [dm6]	T	C	1.841e^-4	0.414	DOWNSTREAM CG33308 INTERGENIC
2R	17867631	2R_17867631_SNP [dm3] 2R_21980126_SNP [dm6]	C	T	1.843e^-4	0.414	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
2R	17731553	2R_17731553_SNP [dm3] 2R_21844048_SNP [dm6]	T	C	1.846e^-4	0.414	UPSTREAM tRNA:CR30407 INTERGENIC
X	20764616	X_20764616_INS [dm3] X_20893589_INS [dm6]	A	AAA	1.849e^-4	0.414	INTRON shakB
X	13221353	X_13221353_DEL [dm3] X_13327320_DEL [dm6]	TT	T	1.851e^-4	0.414	INTRON IP3K2
2R	10038889	2R_10038889_SNP [dm3] 2R_14151384_SNP [dm6]	G	A	1.855e^-4	0.414	SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16405921	2R_16405921_DEL [dm3] 2R_20518416_DEL [dm6]	CTTATC	C	1.857e^-4	0.414	INTERGENIC
2L	3561785	2L_3561785_SNP [dm3] 2L_3561785_SNP [dm6]	T	A	1.858e^-4	0.414	UPSTREAM CR44309 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6477913	2L_6477913_SNP [dm3] 2L_6477913_SNP [dm6]	C	T	1.862e^-4	0.414	UPSTREAM CG9536 INTRON Sec61alpha	TF binding site mE1_TFBS_sens
2L	4974023	2L_4974023_SNP [dm3] 2L_4974023_SNP [dm6]	C	A	1.862e^-4	0.414	UTR_5_PRIME mRpL28 UPSTREAM l_2_05714 DOWNSTREAM CG14043	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7143187	2R_7143187_SNP [dm3] 2R_11255682_SNP [dm6]	A	G	1.864e^-4	0.414	SYNONYMOUS_CODING Cpr47Eb UPSTREAM CG13223
2L	14625824	2L_14625824_SNP [dm3] 2L_14625824_SNP [dm6]	G	A	1.864e^-4	0.414	INTRON osp
2R	10072409	2R_10072409_SNP [dm3] 2R_14184904_SNP [dm6]	T	C	1.864e^-4	0.414	UPSTREAM CG30069 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4808383	X_4808383_DEL [dm3] X_4914350_DEL [dm6]	ATTCTTTATATGCGTTACCC...	A	1.867e^-4	0.414	UTR_3_PRIME CG32772 DOWNSTREAM CG4041	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8883518	2L_8883518_SNP [dm3] 2L_8883518_SNP [dm6]	C	A	1.870e^-4	0.414	INTERGENIC
3R	21067761	3R_21067761_SNP [dm3] 3R_25242039_SNP [dm6]	A	G	1.872e^-4	0.414	START_GAINED CG11854 UTR_5_PRIME CG11854 DOWNSTREAM to & 1 other
2R	11321676	2R_11321676_SNP [dm3] 2R_15434171_SNP [dm6]	T	C	1.872e^-4	0.414	INTRON CG43729	TF binding site mE1_TFBS_chinmo
3L	14319412	3L_14319412_SNP [dm3] 3L_14326312_SNP [dm6]	A	C	1.874e^-4	0.414	UPSTREAM CR45025 INTRON fz
2R	3179473	2R_3179473_DEL [dm3] 2R_7291968_DEL [dm6]	AG	A	1.874e^-4	0.414	INTRON pwn	TF binding site mE1_TFBS_cad
2R	1242672	2R_1242672_SNP [dm3] 2R_5355167_SNP [dm6]	A	T	1.876e^-4	0.414	DOWNSTREAM CG10396 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18479125	2R_18479125_SNP [dm3] 2R_22591620_SNP [dm6]	T	C	1.879e^-4	0.414	INTRON dnr1
2L	12251900	2L_12251900_DEL [dm3] 2L_12251900_DEL [dm6]	TT	T	1.880e^-4	0.414	INTRON aret	TF binding site BDTNP1_TFBS_twi
2L	19718155	2L_19718155_SNP [dm3] 2L_19718155_SNP [dm6]	G	A	1.884e^-4	0.414	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	1.885e^-4	0.414	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4174335	3L_4174335_INS [dm3] 3L_4174335_INS [dm6]	C	CCTTTTC	1.886e^-4	0.414	DOWNSTREAM Ero1L & 1 other INTRON CG18675	TF binding site mE1_TFBS_sens
2R	11600062	2R_11600062_SNP [dm3] 2R_15712557_SNP [dm6]	T	C	1.887e^-4	0.414	NON_SYNONYMOUS_CODING CG30083
2L	8593903	2L_8593903_SNP [dm3] 2L_8593903_SNP [dm6]	G	T	1.893e^-4	0.414	INTRON Sema-1a & 1 other
2L	14767929	2L_14767929_INS [dm3] 2L_14767929_INS [dm6]	T	TTTAT	1.894e^-4	0.414	DOWNSTREAM CG4701 INTERGENIC
2L	12552399	2L_12552399_SNP [dm3] 2L_12552399_SNP [dm6]	A	G	1.896e^-4	0.414	INTERGENIC
2R	10500613	2R_10500613_SNP [dm3] 2R_14613108_SNP [dm6]	A	C	1.900e^-4	0.414	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_sens
2L	17198451	2L_17198451_SNP [dm3] 2L_17198451_SNP [dm6]	C	A	1.906e^-4	0.414	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17197221	2L_17197221_DEL [dm3] 2L_17197221_DEL [dm6]	CAC	A	1.907e^-4	0.414	INTRON beat-IIIc
X	5146250	X_5146250_SNP [dm3] X_5252217_SNP [dm6]	T	A	1.907e^-4	0.414	UTR_3_PRIME CG15465 & 1 other	TF binding site mE1_TFBS_kn
3R	18297130	3R_18297130_SNP [dm3] 3R_22471408_SNP [dm6]	T	A	1.910e^-4	0.414	INTRON Nrx-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7267421	2L_7267421_DEL [dm3] 2L_7267421_DEL [dm6]	AGCTCCA	A	1.914e^-4	0.414	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21967501	3R_21967501_MNP [dm3] 3R_26141779_MNP [dm6]	GAC	TTT	1.916e^-4	0.414	INTERGENIC
3R	18297070	3R_18297070_SNP [dm3] 3R_22471348_SNP [dm6]	C	G	1.917e^-4	0.414	SYNONYMOUS_CODING Nrx-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8983805	X_8983805_DEL [dm3] X_9089772_DEL [dm6]	CATGGACTCCGATTTCGCC...	C	1.923e^-4	0.414	DOWNSTREAM CG6999 INTRON CG7033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2R	7280783	2R_7280783_DEL [dm3] 2R_11393278_DEL [dm6]	CTTGC	C	1.923e^-4	0.414	INTRON sprt
2L	17197217	2L_17197217_SNP [dm3] 2L_17197217_SNP [dm6]	T	A	1.923e^-4	0.414	INTRON beat-IIIc
2L	21264351	2L_21264351_SNP [dm3] 2L_21264351_SNP [dm6]	G	A	1.930e^-4	0.414	DOWNSTREAM mir-4974 INTRON CG8671	TF binding site BDTNP1_TFBS_dl
3L	20069959	3L_20069959_SNP [dm3] 3L_20076859_SNP [dm6]	C	T	1.934e^-4	0.414	INTRON sNPF-R
2L	4500605	2L_4500605_SNP [dm3] 2L_4500605_SNP [dm6]	A	G	1.935e^-4	0.414	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19576136	3R_19576136_SNP [dm3] 3R_23750414_SNP [dm6]	C	G	1.938e^-4	0.414	DOWNSTREAM RanBP3 INTRON Hmgcr	TF binding site mE1_TFBS_cad
3R	25744199	3R_25744199_INS [dm3] 3R_29918477_INS [dm6]	T	TCT	1.938e^-4	0.414	INTRON trp	TF binding site mE1_TFBS_chinmo
2R	4171853	2R_4171853_SNP [dm3] 2R_8284348_SNP [dm6]	T	A	1.941e^-4	0.414	INTERGENIC
3L	3817308	3L_3817308_SNP [dm3] 3L_3817308_SNP [dm6]	G	C	1.942e^-4	0.414	UPSTREAM Acp63F INTRON Scsalpha
X	21440244	X_21440244_SNP [dm3] X_21569217_SNP [dm6]	T	A	1.943e^-4	0.414	INTERGENIC
2R	18064275	2R_18064275_DEL [dm3] 2R_22176770_DEL [dm6]	AA	A	1.944e^-4	0.414	UPSTREAM CR45151 DOWNSTREAM CG11170 INTRON CG6758	TF binding site mE1_TFBS_chinmo
3R	6782529	3R_6782529_SNP [dm3] 3R_10956807_SNP [dm6]	G	T	1.946e^-4	0.414	INTERGENIC
2R	10499189	2R_10499189_SNP [dm3] 2R_14611684_SNP [dm6]	G	A	1.947e^-4	0.414	SYNONYMOUS_CODING Su_var_2-HP2
3R	6782822	3R_6782822_SNP [dm3] 3R_10957100_SNP [dm6]	T	A	1.950e^-4	0.414	INTERGENIC
2L	4301354	2L_4301354_SNP [dm3] 2L_4301354_SNP [dm6]	T	A	1.952e^-4	0.414	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16432848	3L_16432848_SNP [dm3] 3L_16439748_SNP [dm6]	C	T	1.952e^-4	0.414	INTRON CG33158 & 1 other
3L	20070012	3L_20070012_SNP [dm3] 3L_20076912_SNP [dm6]	C	T	1.961e^-4	0.414	INTRON sNPF-R
3L	5181444	3L_5181444_SNP [dm3] 3L_5188344_SNP [dm6]	G	T	1.964e^-4	0.414	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23129179	3R_23129179_SNP [dm3] 3R_27303457_SNP [dm6]	A	G	1.968e^-4	0.414	INTRON CG3339
3R	15064817	3R_15064817_SNP [dm3] 3R_19239095_SNP [dm6]	C	T	1.971e^-4	0.414	INTRON unc79	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	10544767	2L_10544767_SNP [dm3] 2L_10544767_SNP [dm6]	A	G	1.977e^-4	0.414	UPSTREAM Trim9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2735479	2L_2735479_SNP [dm3] 2L_2735479_SNP [dm6]	T	A	1.983e^-4	0.414	UPSTREAM CG31689 INTRON CG31689
3R	15481821	3R_15481821_SNP [dm3] 3R_19656099_SNP [dm6]	C	A	1.989e^-4	0.414	INTRON CG6184	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2275192	2L_2275192_SNP [dm3] 2L_2275192_SNP [dm6]	G	A	1.991e^-4	0.414	DOWNSTREAM CR43753 INTRON CR43753
X	10359492	X_10359492_DEL [dm3] X_10465459_DEL [dm6]	AA	A	1.992e^-4	0.414	INTRON nocte
2L	4654519	2L_4654519_SNP [dm3] 2L_4654519_SNP [dm6]	C	T	1.993e^-4	0.414	INTERGENIC
2L	6167629	2L_6167629_SNP [dm3] 2L_6167629_SNP [dm6]	C	T	1.993e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4508117	2L_4508117_SNP [dm3] 2L_4508117_SNP [dm6]	C	T	1.994e^-4	0.414	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3442054	2L_3442054_INS [dm3] 2L_3442054_INS [dm6]	A	AG	1.995e^-4	0.414	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5272874	3L_5272874_SNP [dm3] 3L_5279774_SNP [dm6]	T	G	2.001e^-4	0.414	INTERGENIC
2L	1998802	2L_1998802_SNP [dm3] 2L_1998802_SNP [dm6]	A	G	2.003e^-4	0.414	INTRON CG33543
3R	18935372	3R_18935372_SNP [dm3] 3R_23109650_SNP [dm6]	G	A	2.004e^-4	0.414	INTRON CG13830
2R	7483571	2R_7483571_SNP [dm3] 2R_11596066_SNP [dm6]	C	T	2.006e^-4	0.414	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16210317	2L_16210317_SNP [dm3] 2L_16210317_SNP [dm6]	G	A	2.011e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	1142872	2R_1142872_DEL [dm3] 2R_5255367_DEL [dm6]	ATTGACTATTAAAATGAATT...	A	2.013e^-4	0.414	DOWNSTREAM CR41443 INTERGENIC
4	690586	4_690586_SNP [dm3] 4_669960_SNP [dm6]	T	C	2.019e^-4	0.414	DOWNSTREAM Slip1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	16895485	3R_16895485_SNP [dm3] 3R_21069763_SNP [dm6]	A	T	2.020e^-4	0.414	DOWNSTREAM r-l & 1 other INTRON AnxB9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	26805278	3R_26805278_SNP [dm3] 3R_30979556_SNP [dm6]	G	A	2.020e^-4	0.414	INTRON 5-HT7
2L	12358043	2L_12358043_SNP [dm3] 2L_12358043_SNP [dm6]	A	C	2.021e^-4	0.414	NON_SYNONYMOUS_CODING bru-2 SPLICE_SITE_REGION bru-2 DOWNSTREAM CG17010	TF binding site mE1_TFBS_chinmo
3R	9790099	3R_9790099_SNP [dm3] 3R_13964377_SNP [dm6]	C	A	2.024e^-4	0.414	UPSTREAM Orc2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2R	4033977	2R_4033977_DEL [dm3] 2R_8146472_DEL [dm6]	TT	T	2.025e^-4	0.414	UPSTREAM Lpin DOWNSTREAM kermit INTRON Lpin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4617239	2L_4617239_DEL [dm3] 2L_4617239_DEL [dm6]	TTAATACAAGAAAACTTTCT...	T	2.026e^-4	0.414	INTERGENIC
3R	12607789	3R_12607789_DEL [dm3] 3R_16782067_DEL [dm6]	CAAGAGGTGGAGAAATGGGA...	C	2.031e^-4	0.414	INTERGENIC
2L	10345954	2L_10345954_SNP [dm3] 2L_10345954_SNP [dm6]	T	A	2.032e^-4	0.414	INTRON CG5022
2L	15076139	2L_15076139_SNP [dm3] 2L_15076139_SNP [dm6]	T	A	2.034e^-4	0.414	INTRON CG15270
2R	3012222	2R_3012222_SNP [dm3] 2R_7124717_SNP [dm6]	G	A	2.040e^-4	0.414	INTRON esn	TF binding site mE1_TFBS_chinmo
2L	10646906	2L_10646906_SNP [dm3] 2L_10646906_SNP [dm6]	T	A	2.042e^-4	0.414	SYNONYMOUS_CODING CG17097	TF binding site mE1_TFBS_inv mE1_TFBS_run
X	3876130	X_3876130_SNP [dm3] X_3982097_SNP [dm6]	T	G	2.043e^-4	0.414	INTERGENIC
3L	76235	3L_76235_DEL [dm3] 3L_76235_DEL [dm6]	CC	C	2.046e^-4	0.414	UPSTREAM CG13405 INTERGENIC
2L	12303239	2L_12303239_SNP [dm3] 2L_12303239_SNP [dm6]	C	T	2.048e^-4	0.414	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3531243	2L_3531243_SNP [dm3] 2L_3531243_SNP [dm6]	T	A	2.049e^-4	0.414	UPSTREAM Spindly INTRON Che-13
2L	4707623	2L_4707623_SNP [dm3] 2L_4707623_SNP [dm6]	A	G	2.050e^-4	0.414	INTRON CG34351
2L	12264912	2L_12264912_DEL [dm3] 2L_12264912_DEL [dm6]	ATCCAAGG	A	2.053e^-4	0.414	INTRON aret
X	17952333	X_17952333_MNP [dm3] X_18058300_MNP [dm6]	TTAT	AATA	2.054e^-4	0.414	INTRON Sh
3R	12541175	3R_12541175_SNP [dm3] 3R_16715453_SNP [dm6]	C	T	2.056e^-4	0.414	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2695207	2L_2695207_SNP [dm3] 2L_2695207_SNP [dm6]	A	C	2.056e^-4	0.414	DOWNSTREAM CG15398 INTRON CG31690
X	14786280	X_14786280_SNP [dm3] X_14892247_SNP [dm6]	G	T	2.056e^-4	0.414	INTRON Flo2 & 1 other
2R	1398881	2R_1398881_SNP [dm3] 2R_5511376_SNP [dm6]	A	G	2.059e^-4	0.414	INTRON CG30438	transposable element FlyBase
2L	11909176	2L_11909176_INS [dm3] 2L_11909176_INS [dm6]	T	TAT	2.060e^-4	0.414	INTRON Pde1c
3L	12112682	3L_12112682_INS [dm3] 3L_12119582_INS [dm6]	A	AATTTAAA	2.062e^-4	0.414	UTR_3_PRIME ssp UPSTREAM CG11560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe
2L	12303586	2L_12303586_SNP [dm3] 2L_12303586_SNP [dm6]	T	C	2.062e^-4	0.414	INTRON aret
2L	3327217	2L_3327217_DEL [dm3] 2L_3327217_DEL [dm6]	CC	C	2.068e^-4	0.414	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
X	18370050	X_18370050_INS [dm3] X_18476017_INS [dm6]	T	TA	2.068e^-4	0.414	INTRON CG32547	TF binding site mE1_TFBS_HSA
3R	12572015	3R_12572015_DEL [dm3] 3R_16746293_DEL [dm6]	GGCAACGCG	G	2.072e^-4	0.414	INTRON bxd EXON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10136158	2R_10136158_SNP [dm3] 2R_14248653_SNP [dm6]	A	C	2.074e^-4	0.414	INTRON Mdr50
2R	14855381	2R_14855381_INS [dm3] 2R_18967876_INS [dm6]	T	TA	2.078e^-4	0.414	INTERGENIC
3R	25978190	3R_25978190_SNP [dm3] 3R_30152468_SNP [dm6]	A	T	2.082e^-4	0.414	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15571950	3L_15571950_DEL [dm3] 3L_15578850_DEL [dm6]	ACA	A	2.082e^-4	0.414	UTR_3_PRIME mrn DOWNSTREAM CG16979	TF binding site mE1_TFBS_cad
X	17635879	X_17635879_DEL [dm3] X_17741846_DEL [dm6]	CC	C	2.083e^-4	0.414	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15764369	2L_15764369_SNP [dm3] 2L_15764369_SNP [dm6]	C	T	2.086e^-4	0.414	UTR_5_PRIME CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20699943	3R_20699943_SNP [dm3] 3R_24874221_SNP [dm6]	G	A	2.087e^-4	0.414	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
3R	21072860	3R_21072860_SNP [dm3] 3R_25247138_SNP [dm6]	C	A	2.088e^-4	0.414	UPSTREAM Nup37 INTRON RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	6810426	2L_6810426_SNP [dm3] 2L_6810426_SNP [dm6]	G	A	2.089e^-4	0.414	INTERGENIC
2R	3731518	2R_3731518_SNP [dm3] 2R_7844013_SNP [dm6]	C	T	2.091e^-4	0.414	INTRON Dgk	TF binding site mE1_TFBS_chinmo
3R	19708353	3R_19708353_SNP [dm3] 3R_23882631_SNP [dm6]	T	C	2.091e^-4	0.414	INTRON Pli
3R	20051147	3R_20051147_DEL [dm3] 3R_24225425_DEL [dm6]	GCTG	G	2.092e^-4	0.414	CODON_DELETION Spps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17731346	2R_17731346_DEL [dm3] 2R_21843841_DEL [dm6]	CA	C	2.094e^-4	0.414	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4483022	2L_4483022_SNP [dm3] 2L_4483022_SNP [dm6]	A	G	2.094e^-4	0.414	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4483152	2L_4483152_SNP [dm3] 2L_4483152_SNP [dm6]	C	A	2.094e^-4	0.414	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4483155	2L_4483155_SNP [dm3] 2L_4483155_SNP [dm6]	G	A	2.094e^-4	0.414	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4819643	2L_4819643_SNP [dm3] 2L_4819643_SNP [dm6]	G	A	2.098e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3416959	3L_3416959_SNP [dm3] 3L_3416959_SNP [dm6]	T	C	2.100e^-4	0.414	UTR_5_PRIME sty INTRON sty	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	12126465	2L_12126465_SNP [dm3] 2L_12126465_SNP [dm6]	G	A	2.101e^-4	0.414	SYNONYMOUS_CODING CG17211
2R	10499156	2R_10499156_SNP [dm3] 2R_14611651_SNP [dm6]	T	C	2.103e^-4	0.414	SYNONYMOUS_CODING Su_var_2-HP2
3R	14889173	3R_14889173_DEL [dm3] 3R_19063451_DEL [dm6]	GGTTGGTCG	G	2.104e^-4	0.414	INTRON cdi
2L	7224373	2L_7224373_SNP [dm3] 2L_7224373_SNP [dm6]	C	A	2.107e^-4	0.414	UTR_3_PRIME Ndae1 INTRON Ndae1
3L	11652486	3L_11652486_SNP [dm3] 3L_11659386_SNP [dm6]	T	C	2.108e^-4	0.414	INTRON CG32085
2L	21929317	2L_21929317_SNP [dm3] 2L_21929317_SNP [dm6]	T	A	2.109e^-4	0.414	UPSTREAM CR45334 INTERGENIC
2L	2018595	2L_2018595_SNP [dm3] 2L_2018595_SNP [dm6]	A	G	2.113e^-4	0.414	INTRON CG4238	TF binding site BDTNP1_TFBS_da
2R	1150429	2R_1150429_SNP [dm3] 2R_5262924_SNP [dm6]	T	G	2.116e^-4	0.414	INTRON d4
2L	9952180	2L_9952180_SNP [dm3] 2L_9952180_SNP [dm6]	A	G	2.125e^-4	0.414	UTR_3_PRIME CG13126 DOWNSTREAM CG13126	TF binding site mE1_TFBS_inv
2L	18886945	2L_18886945_SNP [dm3] 2L_18886945_SNP [dm6]	A	G	2.128e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6443474	2R_6443474_SNP [dm3] 2R_10555969_SNP [dm6]	G	A	2.131e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10141373	2R_10141373_SNP [dm3] 2R_14253868_SNP [dm6]	G	A	2.134e^-4	0.414	SYNONYMOUS_CODING Hsc70-5
2L	7798089	2L_7798089_SNP [dm3] 2L_7798089_SNP [dm6]	G	C	2.136e^-4	0.414	INTRON Herp
2L	1825898	2L_1825898_SNP [dm3] 2L_1825898_SNP [dm6]	G	A	2.137e^-4	0.414	NON_SYNONYMOUS_CODING CG31664
2R	16404962	2R_16404962_SNP [dm3] 2R_20517457_SNP [dm6]	T	C	2.137e^-4	0.414	INTERGENIC
2L	10393778	2L_10393778_SNP [dm3] 2L_10393778_SNP [dm6]	G	A	2.138e^-4	0.414	UTR_3_PRIME Mdh1 DOWNSTREAM da & 1 other	TF binding site mE1_TFBS_cad
2L	20757998	2L_20757998_SNP [dm3] 2L_20757998_SNP [dm6]	A	T	2.143e^-4	0.414	UPSTREAM dia & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23249411	3R_23249411_DEL [dm3] 3R_27423689_DEL [dm6]	ACGGACACAAGGC...	A	2.144e^-4	0.414	INTRON side
2R	4198316	2R_4198316_DEL [dm3] 2R_8310811_DEL [dm6]	AA	A	2.144e^-4	0.414	UPSTREAM CR44450 DOWNSTREAM CR44448 EXON CR44449
3R	25979366	3R_25979366_SNP [dm3] 3R_30153644_SNP [dm6]	G	A	2.145e^-4	0.414	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	20064691	3L_20064691_SNP [dm3] 3L_20071591_SNP [dm6]	T	C	2.148e^-4	0.414	INTRON sNPF-R	TF binding site mE1_TFBS_chinmo
2R	15512282	2R_15512282_SNP [dm3] 2R_19624777_SNP [dm6]	G	A	2.149e^-4	0.414	INTRON sm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15512326	2R_15512326_SNP [dm3] 2R_19624821_SNP [dm6]	G	T	2.149e^-4	0.414	INTRON sm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17595876	2L_17595876_SNP [dm3] 2L_17595876_SNP [dm6]	C	G	2.151e^-4	0.414	INTRON Sytalpha
3L	5694652	3L_5694652_SNP [dm3] 3L_5701552_SNP [dm6]	G	A	2.152e^-4	0.414	INTRON sif
2L	3571570	2L_3571570_SNP [dm3] 2L_3571570_SNP [dm6]	C	A	2.152e^-4	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	10830546	3L_10830546_DEL [dm3] 3L_10837446_DEL [dm6]	TT	T	2.152e^-4	0.414	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	22110952	2L_22110952_INS [dm3] 2L_22110952_INS [dm6]	A	ACATA	2.157e^-4	0.414	DOWNSTREAM CG6675 INTERGENIC
X	17506867	X_17506867_DEL [dm3] X_17612834_DEL [dm6]	CC	C	2.158e^-4	0.414	INTERGENIC
2L	2017705	2L_2017705_DEL [dm3] 2L_2017705_DEL [dm6]	AAGTTGTGAA	A	2.159e^-4	0.414	UTR_5_PRIME CG4238 INTRON CG4238
2R	18284271	2R_18284271_SNP [dm3] 2R_22396766_SNP [dm6]	C	A	2.161e^-4	0.414	INTRON babos	TF binding site BDTNP1_TFBS_dl
2R	9931342	2R_9931342_SNP [dm3] 2R_14043837_SNP [dm6]	A	T	2.162e^-4	0.414	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	17576301	2R_17576301_SNP [dm3] 2R_21688796_SNP [dm6]	A	G	2.165e^-4	0.414	UTR_5_PRIME CG10307 UPSTREAM CG10307 & 1 other	TF binding site mE1_TFBS_Trl
2L	6855340	2L_6855340_SNP [dm3] 2L_6855340_SNP [dm6]	C	T	2.166e^-4	0.414	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad
2L	4643592	2L_4643592_SNP [dm3] 2L_4643592_SNP [dm6]	A	G	2.166e^-4	0.414	SYNONYMOUS_CODING CG15635 DOWNSTREAM BG642163	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18451115	3R_18451115_SNP [dm3] 3R_22625393_SNP [dm6]	A	G	2.169e^-4	0.414	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6764477	2R_6764477_SNP [dm3] 2R_10876972_SNP [dm6]	A	T	2.169e^-4	0.414	NON_SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4833570	2L_4833570_SNP [dm3] 2L_4833570_SNP [dm6]	G	A	2.170e^-4	0.414	SYNONYMOUS_CODING Ir25a
3R	21967499	3R_21967499_INS [dm3] 3R_26141777_INS [dm6]	C	CAT	2.172e^-4	0.414	INTERGENIC
3R	12610105	3R_12610105_SNP [dm3] 3R_16784383_SNP [dm6]	T	A	2.176e^-4	0.414	EXON CR44945
2R	13244449	2R_13244449_INS [dm3] 2R_17356944_INS [dm6]	A	ACAAGCGTATGTATAGTTA...	2.177e^-4	0.414	INTRON mbl
2R	6033718	2R_6033718_INS [dm3] 2R_10146213_INS [dm6]	A	ACAAA	2.183e^-4	0.415	DOWNSTREAM KCNQ & 1 other INTRON KCNQ
2L	5427420	2L_5427420_SNP [dm3] 2L_5427420_SNP [dm6]	T	C	2.184e^-4	0.415	INTERGENIC
2L	14822466	2L_14822466_INS [dm3] 2L_14822466_INS [dm6]	C	CC	2.188e^-4	0.415	INTERGENIC
2R	9482093	2R_9482093_SNP [dm3] 2R_13594588_SNP [dm6]	T	C	2.189e^-4	0.415	SYNONYMOUS_CODING CG6197	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	2134221	2L_2134221_SNP [dm3] 2L_2134221_SNP [dm6]	C	T	2.190e^-4	0.415	INTRON GlyP
2L	7403536	2L_7403536_SNP [dm3] 2L_7403536_SNP [dm6]	T	C	2.193e^-4	0.415	SPLICE_SITE_REGION CG5171 INTRON CG5171
2L	4693842	2L_4693842_INS [dm3] 2L_4693842_INS [dm6]	C	CTTCCGCAGTTTC...	2.197e^-4	0.415	UPSTREAM CG34351 INTERGENIC
2L	12518784	2L_12518784_SNP [dm3] 2L_12518784_SNP [dm6]	A	G	2.200e^-4	0.415	INTRON bun
2L	14652747	2L_14652747_DEL [dm3] 2L_14652747_DEL [dm6]	ATTAAAGTCAA...	A	2.204e^-4	0.415	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12574420	3R_12574420_SNP [dm3] 3R_16748698_SNP [dm6]	A	G	2.209e^-4	0.415	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6781156	3R_6781156_SNP [dm3] 3R_10955434_SNP [dm6]	A	T	2.213e^-4	0.415	INTERGENIC
2R	2990606	2R_2990606_DEL [dm3] 2R_7103101_DEL [dm6]	TT	T	2.216e^-4	0.415	INTRON esn
3L	15867313	3L_15867313_INS [dm3] 3L_15874213_INS [dm6]	C	CC	2.219e^-4	0.415	INTRON pHCl
3R	22430084	3R_22430084_SNP [dm3] 3R_26604362_SNP [dm6]	G	T	2.222e^-4	0.415	DOWNSTREAM scrib INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

pc_SegregVariants_2R phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results