DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.042e^-19)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	<2e-16

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	28.1445	7.7357e-07

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4193 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	21747097	2L_21747097_SNP [dm3] 2L_21747097_SNP [dm6]	C	A	3.502e^-8	0.045	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9396551	2L_9396551_SNP [dm3] 2L_9396551_SNP [dm6]	G	A	5.072e^-8	0.045	DOWNSTREAM CG4438 INTRON Shawl
2L	9396702	2L_9396702_SNP [dm3] 2L_9396702_SNP [dm6]	C	T	7.217e^-8	0.045	DOWNSTREAM CG4438 INTRON Shawl
2L	21746983	2L_21746983_SNP [dm3] 2L_21746983_SNP [dm6]	A	T	1.042e^-7	0.049	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5505861	2R_5505861_SNP [dm3] 2R_9618356_SNP [dm6]	A	G	2.358e^-7	0.088	INTRON Mmp2
2L	21748252	2L_21748252_SNP [dm3] 2L_21748252_SNP [dm6]	C	T	3.770e^-7	0.113	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12324182	2R_12324182_SNP [dm3] 2R_16436677_SNP [dm6]	G	A	4.213e^-7	0.113	UPSTREAM CG7848 INTERGENIC
2R	5505915	2R_5505915_SNP [dm3] 2R_9618410_SNP [dm6]	T	A	5.009e^-7	0.117	INTRON Mmp2
3L	12638578	3L_12638578_SNP [dm3] 3L_12645478_SNP [dm6]	A	T	8.281e^-7	0.128	EXON CR32111
2L	21747859	2L_21747859_SNP [dm3] 2L_21747859_SNP [dm6]	C	G	8.510e^-7	0.128	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12315728	2R_12315728_SNP [dm3] 2R_16428223_SNP [dm6]	T	C	9.567e^-7	0.128	INTRON Sema-2b
3L	8033392	3L_8033392_SNP [dm3] 3L_8040292_SNP [dm6]	T	C	9.922e^-7	0.128	INTRON nmo
2L	22339456	2L_22339456_SNP [dm3] 2L_22339456_SNP [dm6]	G	C	1.040e^-6	0.128	INTRON CG17018	transposable element FlyBase
2L	9839544	2L_9839544_SNP [dm3] 2L_9839544_SNP [dm6]	T	G	1.247e^-6	0.128	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
X	8622823	X_8622823_SNP [dm3] X_8728790_SNP [dm6]	T	C	1.287e^-6	0.128	INTERGENIC
2L	21854007	2L_21854007_SNP [dm3] 2L_21854007_SNP [dm6]	G	T	1.371e^-6	0.128	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12638199	3L_12638199_SNP [dm3] 3L_12645099_SNP [dm6]	C	A	1.372e^-6	0.128	INTRON CR32111	regulatory region REDfly_CRMs
2L	21855509	2L_21855509_SNP [dm3] 2L_21855509_SNP [dm6]	T	C	1.449e^-6	0.128	INTRON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22233658	3R_22233658_SNP [dm3] 3R_26407936_SNP [dm6]	C	T	1.503e^-6	0.128	INTERGENIC
2L	21746958	2L_21746958_SNP [dm3] 2L_21746958_SNP [dm6]	A	G	1.506e^-6	0.128	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21747825	2L_21747825_SNP [dm3] 2L_21747825_SNP [dm6]	C	A	1.544e^-6	0.128	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13653464	3R_13653464_DEL [dm3] 3R_17827742_DEL [dm6]	TT	T	1.584e^-6	0.128	INTRON tinc	TF binding site mE1_TFBS_cad
2L	21858780	2L_21858780_SNP [dm3] 2L_21858780_SNP [dm6]	C	T	1.785e^-6	0.128	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	12638597	3L_12638597_SNP [dm3] 3L_12645497_SNP [dm6]	C	A	1.785e^-6	0.128	EXON CR32111
2R	18603310	2R_18603310_SNP [dm3] 2R_22715805_SNP [dm6]	T	C	1.829e^-6	0.128	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
3R	9226941	3R_9226941_SNP [dm3] 3R_13401219_SNP [dm6]	G	T	1.911e^-6	0.128	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14059489	2L_14059489_SNP [dm3] 2L_14059489_SNP [dm6]	C	A	1.947e^-6	0.128	INTRON nAChRalpha5
2L	21759091	2L_21759091_SNP [dm3] 2L_21759091_SNP [dm6]	C	A	1.978e^-6	0.128	INTRON CG1416
3L	10503033	3L_10503033_SNP [dm3] 3L_10509933_SNP [dm6]	G	A	2.039e^-6	0.128	INTRON A2bp1
3L	12638161	3L_12638161_SNP [dm3] 3L_12645061_SNP [dm6]	G	T	2.044e^-6	0.128	INTRON CR32111	regulatory region REDfly_CRMs
3L	12638598	3L_12638598_SNP [dm3] 3L_12645498_SNP [dm6]	T	G	2.333e^-6	0.137	EXON CR32111
2R	3141826	2R_3141826_DEL [dm3] 2R_7254321_DEL [dm6]	AA	A	2.438e^-6	0.137	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18746859	2L_18746859_SNP [dm3] 2L_18746859_SNP [dm6]	G	T	2.486e^-6	0.137	INTERGENIC
2L	9047596	2L_9047596_SNP [dm3] 2L_9047596_SNP [dm6]	C	G	2.490e^-6	0.137	INTERGENIC
2R	4101991	2R_4101991_SNP [dm3] 2R_8214486_SNP [dm6]	C	A	2.625e^-6	0.141	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5505862	2R_5505862_SNP [dm3] 2R_9618357_SNP [dm6]	A	G	2.713e^-6	0.141	INTRON Mmp2
3R	18581582	3R_18581582_SNP [dm3] 3R_22755860_SNP [dm6]	C	T	3.019e^-6	0.148	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11391599	2L_11391599_SNP [dm3] 2L_11391599_SNP [dm6]	C	T	3.023e^-6	0.148	INTRON CR43681	regulatory region REDfly_CRMs
3L	1300670	3L_1300670_DEL [dm3] 3L_1300670_DEL [dm6]	GTAAG	G	3.084e^-6	0.148	DOWNSTREAM Rac1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13652649	3R_13652649_SNP [dm3] 3R_17826927_SNP [dm6]	G	C	3.165e^-6	0.148	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5505869	2R_5505869_SNP [dm3] 2R_9618364_SNP [dm6]	C	T	3.255e^-6	0.148	INTRON Mmp2
3R	9226136	3R_9226136_DEL [dm3] 3R_13400414_DEL [dm6]	TTAGTTAT	T	3.325e^-6	0.148	INTRON CG9796
X	12184484	X_12184484_SNP [dm3] X_12290451_SNP [dm6]	C	T	3.401e^-6	0.148	INTRON Ten-a
3R	18581576	3R_18581576_SNP [dm3] 3R_22755854_SNP [dm6]	T	C	3.511e^-6	0.15	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7457994	2R_7457994_SNP [dm3] 2R_11570489_SNP [dm6]	C	T	3.721e^-6	0.151	INTERGENIC
2L	3605858	2L_3605858_SNP [dm3] 2L_3605858_SNP [dm6]	T	C	3.754e^-6	0.151	SYNONYMOUS_CODING odd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12638615	3L_12638615_SNP [dm3] 3L_12645515_SNP [dm6]	T	G	3.784e^-6	0.151	EXON CR32111
2L	21793557	2L_21793557_SNP [dm3] 2L_21793557_SNP [dm6]	G	T	4.028e^-6	0.156	INTRON CG31612	TF binding site BDTNP1_TFBS_z
X	12111468	X_12111468_SNP [dm3] X_12217435_SNP [dm6]	C	G	4.284e^-6	0.156	INTRON Ten-a	TF binding site mE1_TFBS_cad
2L	21747861	2L_21747861_SNP [dm3] 2L_21747861_SNP [dm6]	C	T	4.355e^-6	0.156	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9396708	2L_9396708_SNP [dm3] 2L_9396708_SNP [dm6]	C	T	4.378e^-6	0.156	DOWNSTREAM CG4438 INTRON Shawl
3L	17579947	3L_17579947_SNP [dm3] 3L_17586847_SNP [dm6]	T	G	4.572e^-6	0.156	INTRON Eip74EF
3L	12638570	3L_12638570_SNP [dm3] 3L_12645470_SNP [dm6]	G	A	4.689e^-6	0.156	EXON CR32111
3L	12638612	3L_12638612_SNP [dm3] 3L_12645512_SNP [dm6]	G	A	4.707e^-6	0.156	EXON CR32111
2R	16332555	2R_16332555_SNP [dm3] 2R_20445050_SNP [dm6]	G	A	4.771e^-6	0.156	INTRON CG12484
3L	12638608	3L_12638608_SNP [dm3] 3L_12645508_SNP [dm6]	A	T	4.875e^-6	0.156	EXON CR32111
2R	2877700	2R_2877700_SNP [dm3] 2R_6990195_SNP [dm6]	T	A	5.087e^-6	0.156	INTERGENIC	transposable element FlyBase
2L	20097173	2L_20097173_SNP [dm3] 2L_20097173_SNP [dm6]	T	A	5.128e^-6	0.156	UTR_5_PRIME mRpS18B UPSTREAM Kua DOWNSTREAM nesd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	16613414	X_16613414_SNP [dm3] X_16719381_SNP [dm6]	T	G	5.195e^-6	0.156	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	23563740	3R_23563740_SNP [dm3] 3R_27738018_SNP [dm6]	G	A	5.219e^-6	0.156	INTRON Ets98B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20233640	2L_20233640_SNP [dm3] 2L_20233640_SNP [dm6]	A	G	5.264e^-6	0.156	INTERGENIC
3L	12638607	3L_12638607_SNP [dm3] 3L_12645507_SNP [dm6]	G	T	5.290e^-6	0.156	EXON CR32111
3L	12638617	3L_12638617_SNP [dm3] 3L_12645517_SNP [dm6]	T	G	5.350e^-6	0.156	EXON CR32111
3L	2401408	3L_2401408_SNP [dm3] 3L_2401408_SNP [dm6]	C	G	5.451e^-6	0.156	INTRON CG45186
2L	20097653	2L_20097653_SNP [dm3] 2L_20097653_SNP [dm6]	C	T	5.501e^-6	0.156	START_GAINED Kua UTR_5_PRIME Kua UPSTREAM Kua & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25404976	3R_25404976_SNP [dm3] 3R_29579254_SNP [dm6]	C	T	5.583e^-6	0.156	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5505897	2R_5505897_SNP [dm3] 2R_9618392_SNP [dm6]	A	T	5.660e^-6	0.156	INTRON Mmp2
3L	12638611	3L_12638611_SNP [dm3] 3L_12645511_SNP [dm6]	C	G	5.708e^-6	0.156	EXON CR32111
2L	20086170	2L_20086170_SNP [dm3] 2L_20086170_SNP [dm6]	G	A	5.754e^-6	0.156	INTRON neb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10503050	3L_10503050_SNP [dm3] 3L_10509950_SNP [dm6]	T	C	6.168e^-6	0.165	INTRON A2bp1
2L	15473588	2L_15473588_SNP [dm3] 2L_15473588_SNP [dm6]	T	A	6.245e^-6	0.165	INTERGENIC
X	11274048	X_11274048_SNP [dm3] X_11380015_SNP [dm6]	T	C	6.401e^-6	0.166	INTRON dlg1
2L	11624083	2L_11624083_SNP [dm3] 2L_11624083_SNP [dm6]	A	G	6.469e^-6	0.166	SYNONYMOUS_CODING kek2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	15873349	2R_15873349_SNP [dm3] 2R_19985844_SNP [dm6]	T	G	6.550e^-6	0.166	DOWNSTREAM CG8654 INTERGENIC
2R	1305234	2R_1305234_SNP [dm3] 2R_5417729_SNP [dm6]	G	A	6.649e^-6	0.166	INTRON laccase2	TF binding site BDTNP1_TFBS_dl
3L	12638413	3L_12638413_SNP [dm3] 3L_12645313_SNP [dm6]	G	A	6.896e^-6	0.17	SPLICE_SITE_REGION CR32111 INTRON CR32111
2L	20086068	2L_20086068_SNP [dm3] 2L_20086068_SNP [dm6]	T	C	7.248e^-6	0.177	UPSTREAM fok INTRON neb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4341047	2L_4341047_SNP [dm3] 2L_4341047_SNP [dm6]	G	A	8.142e^-6	0.19	INTRON Atet
2L	1669689	2L_1669689_SNP [dm3] 2L_1669689_SNP [dm6]	A	T	8.145e^-6	0.19	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	18267494	2R_18267494_SNP [dm3] 2R_22379989_SNP [dm6]	T	A	8.269e^-6	0.19	UPSTREAM CR45327 INTRON wrapper
2L	20095550	2L_20095550_SNP [dm3] 2L_20095550_SNP [dm6]	G	C	8.336e^-6	0.19	NON_SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B	TF binding site mE1_TFBS_sens
2L	9588278	2L_9588278_SNP [dm3] 2L_9588278_SNP [dm6]	C	A	8.383e^-6	0.19	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9838804	2L_9838804_SNP [dm3] 2L_9838804_SNP [dm6]	A	C	8.503e^-6	0.19	INTRON nAChRalpha6
2L	21840208	2L_21840208_SNP [dm3] 2L_21840208_SNP [dm6]	T	C	8.558e^-6	0.19	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2936925	X_2936925_SNP [dm3] X_3042892_SNP [dm6]	T	G	8.829e^-6	0.19	INTRON kirre
2L	20097573	2L_20097573_SNP [dm3] 2L_20097573_SNP [dm6]	T	A	8.945e^-6	0.19	UPSTREAM Kua & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19180344	2R_19180344_SNP [dm3] 2R_23292821_SNP [dm6]	C	T	9.048e^-6	0.19	INTERGENIC
2L	14336797	2L_14336797_SNP [dm3] 2L_14336797_SNP [dm6]	T	A	9.061e^-6	0.19	INTRON CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5540895	2R_5540895_INS [dm3] 2R_9653390_INS [dm6]	T	TT	9.062e^-6	0.19	INTRON Mmp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12637790	3L_12637790_SNP [dm3] 3L_12644690_SNP [dm6]	T	A	9.096e^-6	0.19	INTRON CR32111	regulatory region REDfly_CRMs
3L	17610836	3L_17610836_SNP [dm3] 3L_17617736_SNP [dm6]	A	T	9.511e^-6	0.192	INTRON Eip74EF
3R	18839102	3R_18839102_SNP [dm3] 3R_23013380_SNP [dm6]	A	T	9.529e^-6	0.192	INTRON CG6688	TF binding site mE1_TFBS_zfh1
2L	21941505	2L_21941505_SNP [dm3] 2L_21941505_SNP [dm6]	T	G	9.626e^-6	0.192	INTERGENIC
2R	13185394	2R_13185394_SNP [dm3] 2R_17297889_SNP [dm6]	A	T	9.740e^-6	0.192	INTRON mbl
3R	25614470	3R_25614470_SNP [dm3] 3R_29788748_SNP [dm6]	C	A	1.003e^-5	0.192	UPSTREAM kay INTRON kay
3L	11657996	3L_11657996_SNP [dm3] 3L_11664896_SNP [dm6]	C	T	1.008e^-5	0.192	INTRON CG32085
2R	12874793	2R_12874793_SNP [dm3] 2R_16987288_SNP [dm6]	G	A	1.021e^-5	0.192	INTRON Cbp53E
2L	21852049	2L_21852049_SNP [dm3] 2L_21852049_SNP [dm6]	A	G	1.047e^-5	0.192	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17580000	3L_17580000_SNP [dm3] 3L_17586900_SNP [dm6]	T	A	1.047e^-5	0.192	INTRON Eip74EF
3R	9629972	3R_9629972_SNP [dm3] 3R_13804250_SNP [dm6]	T	C	1.056e^-5	0.192	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12315746	2R_12315746_SNP [dm3] 2R_16428241_SNP [dm6]	G	A	1.071e^-5	0.192	INTRON Sema-2b
2L	4209784	2L_4209784_DEL [dm3] 2L_4209784_DEL [dm6]	CC	C	1.084e^-5	0.192	INTRON ft	TF binding site mE1_TFBS_inv
X	12247251	X_12247251_SNP [dm3] X_12353218_SNP [dm6]	A	G	1.108e^-5	0.192	INTERGENIC
X	12247253	X_12247253_SNP [dm3] X_12353220_SNP [dm6]	G	A	1.108e^-5	0.192	INTERGENIC
2L	11882005	2L_11882005_SNP [dm3] 2L_11882005_SNP [dm6]	G	A	1.110e^-5	0.192	INTRON Pde1c
3R	13661004	3R_13661004_DEL [dm3] 3R_17835282_DEL [dm6]	TT	T	1.113e^-5	0.192	INTRON tinc
2L	2658404	2L_2658404_SNP [dm3] 2L_2658404_SNP [dm6]	G	A	1.120e^-5	0.192	INTERGENIC
3R	25315206	3R_25315206_SNP [dm3] 3R_29489484_SNP [dm6]	A	C	1.122e^-5	0.192	UTR_5_PRIME CG2006 UPSTREAM CG2321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20865778	X_20865778_SNP [dm3] X_20994751_SNP [dm6]	T	C	1.130e^-5	0.192	INTERGENIC
2L	9752335	2L_9752335_SNP [dm3] 2L_9752335_SNP [dm6]	C	T	1.134e^-5	0.192	INTERGENIC
2L	20092336	2L_20092336_SNP [dm3] 2L_20092336_SNP [dm6]	A	C	1.136e^-5	0.192	NON_SYNONYMOUS_CODING CG10721 UPSTREAM CG10747 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12638593	3L_12638593_SNP [dm3] 3L_12645493_SNP [dm6]	T	A	1.144e^-5	0.192	EXON CR32111
2R	10605253	2R_10605253_SNP [dm3] 2R_14717748_SNP [dm6]	C	A	1.154e^-5	0.192	INTERGENIC
2L	21844397	2L_21844397_SNP [dm3] 2L_21844397_SNP [dm6]	T	A	1.237e^-5	0.202	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20093427	2L_20093427_SNP [dm3] 2L_20093427_SNP [dm6]	G	A	1.240e^-5	0.202	SYNONYMOUS_CODING Taf13 UPSTREAM nesd DOWNSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	20425212	2L_20425212_SNP [dm3] 2L_20425212_SNP [dm6]	A	C	1.252e^-5	0.202	UPSTREAM CG15130 & 1 other INTERGENIC
2L	20095908	2L_20095908_SNP [dm3] 2L_20095908_SNP [dm6]	C	G	1.262e^-5	0.202	NON_SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B
2L	21754824	2L_21754824_SNP [dm3] 2L_21754824_SNP [dm6]	A	G	1.278e^-5	0.202	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8660462	2L_8660462_SNP [dm3] 2L_8660462_SNP [dm6]	C	T	1.282e^-5	0.202	SYNONYMOUS_CODING Sema-1a
3R	18526806	3R_18526806_SNP [dm3] 3R_22701084_SNP [dm6]	A	G	1.323e^-5	0.206	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
X	2937656	X_2937656_SNP [dm3] X_3043623_SNP [dm6]	T	C	1.331e^-5	0.206	INTRON kirre
2L	20093206	2L_20093206_SNP [dm3] 2L_20093206_SNP [dm6]	G	T	1.347e^-5	0.206	UTR_3_PRIME Taf13 UPSTREAM nesd DOWNSTREAM CG10721	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12247277	X_12247277_SNP [dm3] X_12353244_SNP [dm6]	C	T	1.352e^-5	0.206	INTERGENIC
2L	6339739	2L_6339739_INS [dm3] 2L_6339739_INS [dm6]	C	TCGA	1.417e^-5	0.214	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	10079230	2L_10079230_SNP [dm3] 2L_10079230_SNP [dm6]	C	A	1.447e^-5	0.217	INTRON CG44153
2L	11391633	2L_11391633_SNP [dm3] 2L_11391633_SNP [dm6]	C	T	1.499e^-5	0.219	INTRON CR43681	regulatory region REDfly_CRMs
2L	6752827	2L_6752827_SNP [dm3] 2L_6752827_SNP [dm6]	A	T	1.513e^-5	0.219	INTRON CG11221
2L	19783571	2L_19783571_SNP [dm3] 2L_19783571_SNP [dm6]	T	C	1.522e^-5	0.219	INTRON CdGAPr
X	12247391	X_12247391_SNP [dm3] X_12353358_SNP [dm6]	T	G	1.534e^-5	0.219	INTERGENIC
2L	20099103	2L_20099103_SNP [dm3] 2L_20099103_SNP [dm6]	G	T	1.566e^-5	0.219	UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
X	5849952	X_5849952_SNP [dm3] X_5955919_SNP [dm6]	T	A	1.573e^-5	0.219	INTRON CG6067
3R	16763722	3R_16763722_DEL [dm3] 3R_20938000_DEL [dm6]	AACTAACTTTTTATACCCGT...	C	1.595e^-5	0.219	INTRON CG31191
2L	3534347	2L_3534347_SNP [dm3] 2L_3534347_SNP [dm6]	C	G	1.611e^-5	0.219	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9571846	2R_9571846_SNP [dm3] 2R_13684341_SNP [dm6]	C	A	1.624e^-5	0.219	INTRON fas
3L	12246122	3L_12246122_SNP [dm3] 3L_12253022_SNP [dm6]	T	C	1.628e^-5	0.219	INTRON app
3R	1119019	3R_1119019_SNP [dm3] 3R_5293297_SNP [dm6]	C	G	1.639e^-5	0.219	NON_SYNONYMOUS_CODING mtd DOWNSTREAM mtd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17580001	3L_17580001_SNP [dm3] 3L_17586901_SNP [dm6]	T	A	1.655e^-5	0.219	INTRON Eip74EF
2L	6343381	2L_6343381_SNP [dm3] 2L_6343381_SNP [dm6]	A	T	1.656e^-5	0.219	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5246690	3L_5246690_SNP [dm3] 3L_5253590_SNP [dm6]	A	C	1.666e^-5	0.219	INTRON shep
3L	5246691	3L_5246691_SNP [dm3] 3L_5253591_SNP [dm6]	T	A	1.666e^-5	0.219	INTRON shep
3R	1119123	3R_1119123_SNP [dm3] 3R_5293401_SNP [dm6]	T	G	1.677e^-5	0.219	DOWNSTREAM mtd INTRON mtd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12638580	3L_12638580_DEL [dm3] 3L_12645480_DEL [dm6]	GGA	G	1.683e^-5	0.219	EXON CR32111
2L	3887450	2L_3887450_SNP [dm3] 2L_3887450_SNP [dm6]	C	T	1.699e^-5	0.219	SYNONYMOUS_CODING capu UTR_5_PRIME capu INTRON capu
3R	13653433	3R_13653433_SNP [dm3] 3R_17827711_SNP [dm6]	A	C	1.747e^-5	0.219	INTRON tinc	TF binding site mE1_TFBS_cad
3L	12638601	3L_12638601_MNP [dm3] 3L_12645501_MNP [dm6]	CCAAT	TTGTG	1.752e^-5	0.219	EXON CR32111
2L	6574816	2L_6574816_SNP [dm3] 2L_6574816_SNP [dm6]	A	G	1.753e^-5	0.219	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5534890	2R_5534890_SNP [dm3] 2R_9647385_SNP [dm6]	G	A	1.756e^-5	0.219	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
2L	20092049	2L_20092049_SNP [dm3] 2L_20092049_SNP [dm6]	C	T	1.756e^-5	0.219	SYNONYMOUS_CODING CG10721 UPSTREAM CG10747	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_sens
3L	10503024	3L_10503024_INS [dm3] 3L_10509924_INS [dm6]	G	GCATTT	1.796e^-5	0.219	INTRON A2bp1
3L	9161576	3L_9161576_DEL [dm3] 3L_9168476_DEL [dm6]	TT	T	1.797e^-5	0.219	INTRON Rdl
3L	9035096	3L_9035096_SNP [dm3] 3L_9041996_SNP [dm6]	A	G	1.830e^-5	0.219	INTRON Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18652331	2L_18652331_SNP [dm3] 2L_18652331_SNP [dm6]	A	G	1.833e^-5	0.219	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3812910	2R_3812910_SNP [dm3] 2R_7925405_SNP [dm6]	A	T	1.833e^-5	0.219	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	21840214	2L_21840214_SNP [dm3] 2L_21840214_SNP [dm6]	G	C	1.842e^-5	0.219	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16612808	X_16612808_SNP [dm3] X_16718775_SNP [dm6]	T	C	1.843e^-5	0.219	INTRON CG34325
2L	18652304	2L_18652304_SNP [dm3] 2L_18652304_SNP [dm6]	A	G	1.845e^-5	0.219	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14940147	2R_14940147_SNP [dm3] 2R_19052642_SNP [dm6]	C	G	1.847e^-5	0.219	INTERGENIC
2L	21852072	2L_21852072_SNP [dm3] 2L_21852072_SNP [dm6]	A	G	1.848e^-5	0.219	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21844701	2L_21844701_SNP [dm3] 2L_21844701_SNP [dm6]	C	T	1.863e^-5	0.22	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21849181	2L_21849181_SNP [dm3] 2L_21849181_SNP [dm6]	T	A	1.891e^-5	0.222	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10503022	3L_10503022_SNP [dm3] 3L_10509922_SNP [dm6]	A	T	1.903e^-5	0.222	INTRON A2bp1
3L	4717977	3L_4717977_SNP [dm3] 3L_4717977_SNP [dm6]	C	G	1.948e^-5	0.224	INTRON RhoGEF64C
2L	21756747	2L_21756747_SNP [dm3] 2L_21756747_SNP [dm6]	C	A	1.951e^-5	0.224	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
2R	12324148	2R_12324148_SNP [dm3] 2R_16436643_SNP [dm6]	G	A	1.963e^-5	0.224	UPSTREAM CG7848 INTERGENIC
2L	20097349	2L_20097349_SNP [dm3] 2L_20097349_SNP [dm6]	G	A	1.992e^-5	0.225	UPSTREAM Kua & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17182259	3L_17182259_SNP [dm3] 3L_17189159_SNP [dm6]	C	T	2.015e^-5	0.225	INTRON Rbp6	TF binding site mE1_TFBS_cad
3L	907024	3L_907024_SNP [dm3] 3L_907024_SNP [dm6]	T	C	2.017e^-5	0.225	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1620263	2L_1620263_SNP [dm3] 2L_1620263_SNP [dm6]	G	A	2.033e^-5	0.225	EXON CR44603
X	5845877	X_5845877_SNP [dm3] X_5951844_SNP [dm6]	T	C	2.034e^-5	0.225	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
2L	21847181	2L_21847181_DEL [dm3] 2L_21847181_DEL [dm6]	TGGTTCGGGGT...	T	2.047e^-5	0.225	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4183279	2R_4183279_SNP [dm3] 2R_8295774_SNP [dm6]	T	A	2.049e^-5	0.225	INTERGENIC
2L	14866159	2L_14866159_SNP [dm3] 2L_14866159_SNP [dm6]	C	T	2.077e^-5	0.225	INTERGENIC
2L	9838805	2L_9838805_DEL [dm3] 2L_9838805_DEL [dm6]	ATCTT	A	2.078e^-5	0.225	INTRON nAChRalpha6
3L	12638430	3L_12638430_SNP [dm3] 3L_12645330_SNP [dm6]	A	G	2.089e^-5	0.225	INTRON CR32111
3L	12637677	3L_12637677_SNP [dm3] 3L_12644577_SNP [dm6]	T	G	2.101e^-5	0.225	INTRON CR32111	regulatory region REDfly_CRMs
2R	3130149	2R_3130149_SNP [dm3] 2R_7242644_SNP [dm6]	T	A	2.142e^-5	0.227	DOWNSTREAM Ady43A INTERGENIC
2R	18267648	2R_18267648_SNP [dm3] 2R_22380143_SNP [dm6]	G	A	2.169e^-5	0.227	INTRON wrapper
2R	15503869	2R_15503869_SNP [dm3] 2R_19616364_SNP [dm6]	T	G	2.170e^-5	0.227	INTRON sm
2L	21941328	2L_21941328_SNP [dm3] 2L_21941328_SNP [dm6]	A	T	2.173e^-5	0.227	INTERGENIC
2L	3499368	2L_3499368_SNP [dm3] 2L_3499368_SNP [dm6]	G	C	2.185e^-5	0.227	SYNONYMOUS_CODING tim UTR_3_PRIME tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1819310	2L_1819310_SNP [dm3] 2L_1819310_SNP [dm6]	G	A	2.189e^-5	0.227	INTERGENIC
3R	13660719	3R_13660719_SNP [dm3] 3R_17834997_SNP [dm6]	G	T	2.202e^-5	0.227	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2L	21851936	2L_21851936_SNP [dm3] 2L_21851936_SNP [dm6]	A	G	2.218e^-5	0.227	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	12448138	X_12448138_SNP [dm3] X_12554105_SNP [dm6]	A	G	2.251e^-5	0.228	SYNONYMOUS_CODING Cpr11B INTRON CG43921
3L	17612801	3L_17612801_SNP [dm3] 3L_17619701_SNP [dm6]	C	T	2.251e^-5	0.228	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	22063003	2L_22063003_INS [dm3] 2L_22063003_INS [dm6]	A	AA	2.290e^-5	0.23	INTERGENIC
X	12186137	X_12186137_SNP [dm3] X_12292104_SNP [dm6]	C	A	2.292e^-5	0.23	INTRON Ten-a
2L	9588166	2L_9588166_SNP [dm3] 2L_9588166_SNP [dm6]	A	G	2.343e^-5	0.231	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9838814	2L_9838814_MNP [dm3] 2L_9838814_MNP [dm6]	TAA	ATG	2.347e^-5	0.231	INTRON nAChRalpha6
2L	9838817	2L_9838817_DEL [dm3] 2L_9838817_DEL [dm6]	CTTTGAACTATA...	C	2.347e^-5	0.231	INTRON nAChRalpha6
2R	3130152	2R_3130152_DEL [dm3] 2R_7242647_DEL [dm6]	CTTT	C	2.356e^-5	0.231	DOWNSTREAM Ady43A INTERGENIC
2L	8702777	2L_8702777_SNP [dm3] 2L_8702777_SNP [dm6]	A	T	2.361e^-5	0.231	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
X	9017621	X_9017621_DEL [dm3] X_9123588_DEL [dm6]	AGT	A	2.374e^-5	0.231	UTR_3_PRIME fend
2L	20097231	2L_20097231_SNP [dm3] 2L_20097231_SNP [dm6]	C	T	2.412e^-5	0.233	UTR_5_PRIME mRpS18B UPSTREAM Kua DOWNSTREAM nesd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
4	1055575	4_1055575_INS [dm3] 4_1034949_INS [dm6]	C	CTTCTTA	2.467e^-5	0.236	DOWNSTREAM CaMKII & 1 other INTERGENIC
2L	10777478	2L_10777478_SNP [dm3] 2L_10777478_SNP [dm6]	T	A	2.500e^-5	0.236	INTRON CG31869
2L	17035951	2L_17035951_SNP [dm3] 2L_17035951_SNP [dm6]	T	G	2.516e^-5	0.236	INTERGENIC
3L	12638431	3L_12638431_SNP [dm3] 3L_12645331_SNP [dm6]	T	C	2.517e^-5	0.236	INTRON CR32111
2L	9587981	2L_9587981_SNP [dm3] 2L_9587981_SNP [dm6]	G	A	2.518e^-5	0.236	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15903311	2L_15903311_SNP [dm3] 2L_15903311_SNP [dm6]	T	A	2.526e^-5	0.236	UPSTREAM CG31821 INTERGENIC
3L	9231451	3L_9231451_SNP [dm3] 3L_9238351_SNP [dm6]	C	A	2.537e^-5	0.236	INTERGENIC
2L	20061336	2L_20061336_SNP [dm3] 2L_20061336_SNP [dm6]	T	C	2.538e^-5	0.236	UTR_5_PRIME barr UPSTREAM lok & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	9199905	2L_9199905_SNP [dm3] 2L_9199905_SNP [dm6]	G	A	2.646e^-5	0.244	INTRON tai
X	2944197	X_2944197_SNP [dm3] X_3050164_SNP [dm6]	A	T	2.657e^-5	0.244	INTRON kirre
2L	9393529	2L_9393529_SNP [dm3] 2L_9393529_SNP [dm6]	A	G	2.696e^-5	0.244	INTRON Shawl
2L	20091564	2L_20091564_SNP [dm3] 2L_20091564_SNP [dm6]	T	C	2.698e^-5	0.244	UPSTREAM CG10721 & 1 other INTRON CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25796033	3R_25796033_SNP [dm3] 3R_29970311_SNP [dm6]	T	C	2.707e^-5	0.244	UPSTREAM TkR99D INTERGENIC
2R	3812901	2R_3812901_SNP [dm3] 2R_7925396_SNP [dm6]	C	T	2.756e^-5	0.244	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	21019215	2L_21019215_SNP [dm3] 2L_21019215_SNP [dm6]	C	T	2.756e^-5	0.244	INTRON CG42238
2L	2096467	2L_2096467_SNP [dm3] 2L_2096467_SNP [dm6]	C	T	2.762e^-5	0.244	INTRON dpr3
X	2944057	X_2944057_SNP [dm3] X_3050024_SNP [dm6]	A	T	2.766e^-5	0.244	INTRON kirre
2R	12320730	2R_12320730_DEL [dm3] 2R_16433225_DEL [dm6]	TATGT	T	2.775e^-5	0.244	DOWNSTREAM CG7848 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2944225	X_2944225_SNP [dm3] X_3050192_SNP [dm6]	T	A	2.784e^-5	0.244	INTRON kirre
2R	19180347	2R_19180347_SNP [dm3] 2R_23292824_SNP [dm6]	A	C	2.787e^-5	0.244	INTERGENIC
2R	12315977	2R_12315977_SNP [dm3] 2R_16428472_SNP [dm6]	T	C	2.792e^-5	0.244	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi
2R	20505463	2R_20505463_SNP [dm3] 2R_24617940_SNP [dm6]	C	T	2.815e^-5	0.244	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	4009856	2L_4009856_SNP [dm3] 2L_4009856_SNP [dm6]	G	A	2.818e^-5	0.244	DOWNSTREAM CG43774 INTERGENIC
X	16613801	X_16613801_SNP [dm3] X_16719768_SNP [dm6]	G	A	2.835e^-5	0.244	INTRON CG34325
2L	11637759	2L_11637759_SNP [dm3] 2L_11637759_SNP [dm6]	A	T	2.898e^-5	0.247	INTERGENIC
2L	5428170	2L_5428170_SNP [dm3] 2L_5428170_SNP [dm6]	G	T	2.919e^-5	0.247	INTERGENIC
3L	21324619	3L_21324619_SNP [dm3] 3L_21331519_SNP [dm6]	G	A	2.940e^-5	0.247	INTRON Rab26
2R	18287192	2R_18287192_SNP [dm3] 2R_22399687_SNP [dm6]	C	T	2.946e^-5	0.247	INTRON babos	TF binding site BDTNP1_TFBS_dl
3L	1300610	3L_1300610_SNP [dm3] 3L_1300610_SNP [dm6]	G	A	2.949e^-5	0.247	DOWNSTREAM Rac1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8774219	2L_8774219_SNP [dm3] 2L_8774219_SNP [dm6]	T	A	2.968e^-5	0.247	INTRON CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10423797	2R_10423797_SNP [dm3] 2R_14536292_SNP [dm6]	C	A	2.968e^-5	0.247	INTRON ttv
3L	1300825	3L_1300825_SNP [dm3] 3L_1300825_SNP [dm6]	A	T	2.995e^-5	0.249	DOWNSTREAM Rac1 & 1 other INTERGENIC
2L	21819665	2L_21819665_SNP [dm3] 2L_21819665_SNP [dm6]	G	T	3.016e^-5	0.249	EXON CR44786	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11273846	X_11273846_DEL [dm3] X_11379813_DEL [dm6]	GATAAAATACAGGCAATTCT...	ATATAT	3.035e^-5	0.25	INTRON dlg1
2R	4200078	2R_4200078_DEL [dm3] 2R_8312573_DEL [dm6]	CTCTT	AA	3.064e^-5	0.251	DOWNSTREAM CR44450 INTERGENIC
2L	20099157	2L_20099157_SNP [dm3] 2L_20099157_SNP [dm6]	G	C	3.110e^-5	0.253	UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
2L	4009836	2L_4009836_SNP [dm3] 2L_4009836_SNP [dm6]	T	C	3.119e^-5	0.253	DOWNSTREAM CG43774 INTERGENIC
X	5846125	X_5846125_SNP [dm3] X_5952092_SNP [dm6]	G	C	3.134e^-5	0.253	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
2L	19311940	2L_19311940_SNP [dm3] 2L_19311940_SNP [dm6]	G	T	3.195e^-5	0.257	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16391968	2L_16391968_SNP [dm3] 2L_16391968_SNP [dm6]	C	T	3.304e^-5	0.262	INTERGENIC
2L	4520094	2L_4520094_SNP [dm3] 2L_4520094_SNP [dm6]	A	T	3.305e^-5	0.262	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	21944400	2L_21944400_DEL [dm3] 2L_21944400_DEL [dm6]	GGTGTGCAAA	T	3.307e^-5	0.262	INTERGENIC
2L	9588155	2L_9588155_SNP [dm3] 2L_9588155_SNP [dm6]	A	G	3.320e^-5	0.262	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11882007	2L_11882007_SNP [dm3] 2L_11882007_SNP [dm6]	T	A	3.350e^-5	0.262	INTRON Pde1c
2L	20091029	2L_20091029_SNP [dm3] 2L_20091029_SNP [dm6]	A	G	3.411e^-5	0.262	SYNONYMOUS_CODING CG10747 UPSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20254886	2L_20254886_SNP [dm3] 2L_20254886_SNP [dm6]	A	T	3.418e^-5	0.262	UPSTREAM CR40465 INTERGENIC
3L	10663485	3L_10663485_SNP [dm3] 3L_10670385_SNP [dm6]	C	A	3.448e^-5	0.262	INTRON simj	TF binding site BDTNP1_TFBS_dl
2L	9838913	2L_9838913_INS [dm3] 2L_9838913_INS [dm6]	T	TT	3.470e^-5	0.262	INTRON nAChRalpha6
3R	13652821	3R_13652821_SNP [dm3] 3R_17827099_SNP [dm6]	G	A	3.477e^-5	0.262	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17663904	2R_17663904_SNP [dm3] 2R_21776399_SNP [dm6]	G	A	3.482e^-5	0.262	INTERGENIC
2R	19180343	2R_19180343_SNP [dm3] 2R_23292820_SNP [dm6]	T	C	3.484e^-5	0.262	INTERGENIC
3L	5246522	3L_5246522_SNP [dm3] 3L_5253422_SNP [dm6]	G	C	3.484e^-5	0.262	INTRON shep
3L	1087706	3L_1087706_SNP [dm3] 3L_1087706_SNP [dm6]	T	C	3.503e^-5	0.262	INTRON bab1
2L	19651404	2L_19651404_SNP [dm3] 2L_19651404_SNP [dm6]	C	A	3.508e^-5	0.262	INTRON Lar
2L	11619668	2L_11619668_SNP [dm3] 2L_11619668_SNP [dm6]	C	T	3.511e^-5	0.262	INTRON kek2
2L	12296927	2L_12296927_SNP [dm3] 2L_12296927_SNP [dm6]	A	G	3.536e^-5	0.262	INTRON aret
2L	18660049	2L_18660049_SNP [dm3] 2L_18660049_SNP [dm6]	A	C	3.547e^-5	0.262	INTRON MESR3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15139143	2L_15139143_INS [dm3] 2L_15139143_INS [dm6]	G	GTGTAATAA	3.563e^-5	0.262	INTERGENIC
2L	7710974	2L_7710974_SNP [dm3] 2L_7710974_SNP [dm6]	C	T	3.567e^-5	0.262	UTR_5_PRIME Ntl UPSTREAM CR44990 & 2 others DOWNSTREAM Tep3
2R	5523831	2R_5523831_SNP [dm3] 2R_9636326_SNP [dm6]	C	A	3.579e^-5	0.262	DOWNSTREAM CR44070 INTRON Mmp2
3R	18840187	3R_18840187_SNP [dm3] 3R_23014465_SNP [dm6]	C	T	3.604e^-5	0.262	SYNONYMOUS_CODING CG6688	TF binding site mE1_TFBS_chinmo
3R	19740674	3R_19740674_SNP [dm3] 3R_23914952_SNP [dm6]	G	A	3.613e^-5	0.262	INTRON sba	TF binding site mE1_TFBS_Kr
2R	521882	2R_521882_SNP [dm3] 2R_4634377_SNP [dm6]	C	G	3.615e^-5	0.262	INTERGENIC
2L	2822837	2L_2822837_DEL [dm3] 2L_2822837_DEL [dm6]	TGAGT	T	3.618e^-5	0.262	DOWNSTREAM CG3123 INTRON Duox
2R	13921322	2R_13921322_SNP [dm3] 2R_18033817_SNP [dm6]	G	A	3.622e^-5	0.262	INTERGENIC
2R	3130145	2R_3130145_DEL [dm3] 2R_7242640_DEL [dm6]	GAG	A	3.634e^-5	0.262	DOWNSTREAM Ady43A INTERGENIC
3L	9645144	3L_9645144_SNP [dm3] 3L_9652044_SNP [dm6]	A	T	3.641e^-5	0.262	INTRON fry & 1 other
2L	21994956	2L_21994956_SNP [dm3] 2L_21994956_SNP [dm6]	C	T	3.668e^-5	0.262	INTERGENIC
2L	20254759	2L_20254759_SNP [dm3] 2L_20254759_SNP [dm6]	G	T	3.687e^-5	0.262	UPSTREAM CR40465 INTERGENIC
X	18065438	X_18065438_SNP [dm3] X_18171405_SNP [dm6]	C	T	3.699e^-5	0.262	UTR_3_PRIME Frq1
2R	2990606	2R_2990606_DEL [dm3] 2R_7103101_DEL [dm6]	TT	T	3.706e^-5	0.262	INTRON esn
2L	16691804	2L_16691804_DEL [dm3] 2L_16691804_DEL [dm6]	GACACCAG	G	3.729e^-5	0.263	INTRON grp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4153669	2R_4153669_SNP [dm3] 2R_8266164_SNP [dm6]	T	G	3.753e^-5	0.263	SYNONYMOUS_CODING CG30375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4377553	2R_4377553_SNP [dm3] 2R_8490048_SNP [dm6]	G	A	3.775e^-5	0.263	INTRON mtt
3R	25290840	3R_25290840_SNP [dm3] 3R_29465118_SNP [dm6]	C	G	3.778e^-5	0.263	INTRON Ptp99A
3L	12638165	3L_12638165_SNP [dm3] 3L_12645065_SNP [dm6]	A	T	3.802e^-5	0.263	INTRON CR32111	regulatory region REDfly_CRMs
2R	18267679	2R_18267679_SNP [dm3] 2R_22380174_SNP [dm6]	G	A	3.826e^-5	0.263	INTRON wrapper
2R	5524005	2R_5524005_SNP [dm3] 2R_9636500_SNP [dm6]	G	A	3.870e^-5	0.263	DOWNSTREAM CR44070 INTRON Mmp2
2L	3589125	2L_3589125_SNP [dm3] 2L_3589125_SNP [dm6]	C	G	3.874e^-5	0.263	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	16463665	3L_16463665_SNP [dm3] 3L_16470565_SNP [dm6]	T	G	3.874e^-5	0.263	UTR_3_PRIME aos INTRON CG33158
X	7438968	X_7438968_SNP [dm3] X_7544935_SNP [dm6]	A	G	3.900e^-5	0.263	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	22336196	2L_22336196_SNP [dm3] 2L_22336196_SNP [dm6]	G	C	3.915e^-5	0.263	INTRON CG17018	transposable element FlyBase
2R	17603473	2R_17603473_SNP [dm3] 2R_21715968_SNP [dm6]	C	T	3.918e^-5	0.263	UTR_3_PRIME HmgD DOWNSTREAM Tango11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3952196	2L_3952196_SNP [dm3] 2L_3952196_SNP [dm6]	G	A	3.931e^-5	0.263	INTRON fred
3R	19565130	3R_19565130_SNP [dm3] 3R_23739408_SNP [dm6]	C	G	3.935e^-5	0.263	INTRON Hmgcr
3R	10310307	3R_10310307_SNP [dm3] 3R_14484585_SNP [dm6]	G	A	3.937e^-5	0.263	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12638151	3L_12638151_SNP [dm3] 3L_12645051_SNP [dm6]	C	T	3.940e^-5	0.263	INTRON CR32111	regulatory region REDfly_CRMs
2L	5432414	2L_5432414_SNP [dm3] 2L_5432414_SNP [dm6]	A	G	3.957e^-5	0.263	UPSTREAM CR43714 EXON CR43713
2L	5067091	2L_5067091_SNP [dm3] 2L_5067091_SNP [dm6]	T	G	3.989e^-5	0.264	SYNONYMOUS_CODING qtc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12315707	2R_12315707_SNP [dm3] 2R_16428202_SNP [dm6]	T	A	4.036e^-5	0.266	INTRON Sema-2b
X	8449016	X_8449016_DEL [dm3] X_8554983_DEL [dm6]	TT	T	4.043e^-5	0.266	UTR_3_PRIME Nrg DOWNSTREAM IntS4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	8880104	3L_8880104_SNP [dm3] 3L_8887004_SNP [dm6]	T	C	4.075e^-5	0.267	INTRON dally
2L	14849449	2L_14849449_SNP [dm3] 2L_14849449_SNP [dm6]	T	A	4.097e^-5	0.267	UPSTREAM CG15279 INTRON CG15279
2L	7710910	2L_7710910_SNP [dm3] 2L_7710910_SNP [dm6]	C	A	4.101e^-5	0.267	UTR_5_PRIME Ntl UPSTREAM CR44990 & 2 others DOWNSTREAM Tep3
2R	13551597	2R_13551597_SNP [dm3] 2R_17664092_SNP [dm6]	A	C	4.130e^-5	0.267	INTRON CCHa1-R
2R	3130165	2R_3130165_DEL [dm3] 2R_7242660_DEL [dm6]	CGTCACTT	AAG	4.148e^-5	0.267	DOWNSTREAM Ady43A INTERGENIC
3R	18849432	3R_18849432_SNP [dm3] 3R_23023710_SNP [dm6]	C	A	4.151e^-5	0.267	INTRON lmd	TF binding site BDTNP1_TFBS_twi
2L	14849446	2L_14849446_INS [dm3] 2L_14849446_INS [dm6]	T	TAAGG	4.189e^-5	0.267	UPSTREAM CG15279 INTRON CG15279
2R	3812727	2R_3812727_SNP [dm3] 2R_7925222_SNP [dm6]	A	G	4.192e^-5	0.267	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9629983	3R_9629983_SNP [dm3] 3R_13804261_SNP [dm6]	G	A	4.202e^-5	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1107770	X_1107770_SNP [dm3] X_1213737_SNP [dm6]	A	G	4.211e^-5	0.267	UTR_3_PRIME CG11398
2R	12315695	2R_12315695_SNP [dm3] 2R_16428190_SNP [dm6]	G	A	4.244e^-5	0.267	INTRON Sema-2b
X	16838604	X_16838604_SNP [dm3] X_16944571_SNP [dm6]	C	T	4.258e^-5	0.267	INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4145889	2L_4145889_SNP [dm3] 2L_4145889_SNP [dm6]	T	G	4.268e^-5	0.267	INTERGENIC
2L	21793513	2L_21793513_SNP [dm3] 2L_21793513_SNP [dm6]	T	A	4.274e^-5	0.267	INTRON CG31612	TF binding site BDTNP1_TFBS_z
3L	12638618	3L_12638618_SNP [dm3] 3L_12645518_SNP [dm6]	G	T	4.339e^-5	0.267	EXON CR32111
2R	7423508	2R_7423508_SNP [dm3] 2R_11536003_SNP [dm6]	G	A	4.356e^-5	0.267	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4515284	3L_4515284_SNP [dm3] 3L_4515284_SNP [dm6]	A	G	4.360e^-5	0.267	INTRON Tie	TF binding site mE1_TFBS_chinmo
2R	7402770	2R_7402770_SNP [dm3] 2R_11515265_SNP [dm6]	C	A	4.371e^-5	0.267	INTERGENIC
2R	3130151	2R_3130151_SNP [dm3] 2R_7242646_SNP [dm6]	T	G	4.375e^-5	0.267	DOWNSTREAM Ady43A INTERGENIC
2R	3812911	2R_3812911_SNP [dm3] 2R_7925406_SNP [dm6]	T	A	4.388e^-5	0.267	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	10721027	2L_10721027_SNP [dm3] 2L_10721027_SNP [dm6]	C	T	4.399e^-5	0.267	INTERGENIC
2R	12351408	2R_12351408_SNP [dm3] 2R_16463903_SNP [dm6]	C	G	4.406e^-5	0.267	INTERGENIC
2L	17957366	2L_17957366_SNP [dm3] 2L_17957366_SNP [dm6]	A	T	4.484e^-5	0.267	INTERGENIC
2L	20087207	2L_20087207_SNP [dm3] 2L_20087207_SNP [dm6]	A	G	4.490e^-5	0.267	INTRON neb
2L	14298010	2L_14298010_SNP [dm3] 2L_14298010_SNP [dm6]	C	T	4.492e^-5	0.267	INTRON wb
2R	14048201	2R_14048201_SNP [dm3] 2R_18160696_SNP [dm6]	C	T	4.523e^-5	0.267	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12186127	X_12186127_SNP [dm3] X_12292094_SNP [dm6]	A	G	4.523e^-5	0.267	INTRON Ten-a
2R	20173697	2R_20173697_SNP [dm3] 2R_24286174_SNP [dm6]	C	T	4.569e^-5	0.267	INTRON nvy	TF binding site mE1_TFBS_chinmo
2L	20301280	2L_20301280_SNP [dm3] 2L_20301280_SNP [dm6]	A	T	4.570e^-5	0.267	INTERGENIC
2L	9587189	2L_9587189_DEL [dm3] 2L_9587189_DEL [dm6]	AA	A	4.599e^-5	0.267	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	21747789	2L_21747789_SNP [dm3] 2L_21747789_SNP [dm6]	G	A	4.619e^-5	0.267	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5537955	2R_5537955_SNP [dm3] 2R_9650450_SNP [dm6]	C	T	4.624e^-5	0.267	INTRON Mmp2
2R	5535496	2R_5535496_SNP [dm3] 2R_9647991_SNP [dm6]	C	T	4.627e^-5	0.267	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
2L	6642950	2L_6642950_SNP [dm3] 2L_6642950_SNP [dm6]	G	T	4.631e^-5	0.267	INTRON CG31635	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20603950	3R_20603950_SNP [dm3] 3R_24778228_SNP [dm6]	T	C	4.637e^-5	0.267	INTRON CG42331
2R	11961329	2R_11961329_DEL [dm3] 2R_16073824_DEL [dm6]	GG	G	4.639e^-5	0.267	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19932428	2L_19932428_SNP [dm3] 2L_19932428_SNP [dm6]	C	A	4.642e^-5	0.267	INTRON sick
2L	21751391	2L_21751391_SNP [dm3] 2L_21751391_SNP [dm6]	T	A	4.644e^-5	0.267	INTRON step	transposable element FlyBase
2L	8149658	2L_8149658_SNP [dm3] 2L_8149658_SNP [dm6]	G	A	4.653e^-5	0.267	INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl
X	2088775	X_2088775_DEL [dm3] X_2194742_DEL [dm6]	TGT	T	4.682e^-5	0.267	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19543550	2R_19543550_SNP [dm3] 2R_23656027_SNP [dm6]	T	G	4.717e^-5	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18583008	2L_18583008_SNP [dm3] 2L_18583008_SNP [dm6]	A	T	4.721e^-5	0.267	INTRON Pde11	transposable element FlyBase
2L	15001094	2L_15001094_SNP [dm3] 2L_15001094_SNP [dm6]	T	C	4.722e^-5	0.267	INTERGENIC
2L	22062746	2L_22062746_SNP [dm3] 2L_22062746_SNP [dm6]	C	T	4.736e^-5	0.267	INTERGENIC	transposable element FlyBase
3L	13534169	3L_13534169_SNP [dm3] 3L_13541069_SNP [dm6]	A	G	4.745e^-5	0.267	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
2R	3812903	2R_3812903_SNP [dm3] 2R_7925398_SNP [dm6]	A	T	4.778e^-5	0.267	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	21869543	2L_21869543_SNP [dm3] 2L_21869543_SNP [dm6]	C	G	4.798e^-5	0.267	DOWNSTREAM CR44920 INTRON CR44917 EXON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5746705	2L_5746705_SNP [dm3] 2L_5746705_SNP [dm6]	C	T	4.811e^-5	0.267	SYNONYMOUS_CODING CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15421138	2L_15421138_SNP [dm3] 2L_15421138_SNP [dm6]	T	C	4.813e^-5	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15002061	2L_15002061_SNP [dm3] 2L_15002061_SNP [dm6]	G	T	4.816e^-5	0.267	INTERGENIC
2L	6042310	2L_6042310_SNP [dm3] 2L_6042310_SNP [dm6]	A	G	4.818e^-5	0.267	SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10776429	2L_10776429_SNP [dm3] 2L_10776429_SNP [dm6]	A	T	4.851e^-5	0.267	INTRON CG31869
2R	18176624	2R_18176624_SNP [dm3] 2R_22289119_SNP [dm6]	A	C	4.853e^-5	0.267	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2736528	2R_2736528_SNP [dm3] 2R_6849023_SNP [dm6]	G	A	4.859e^-5	0.267	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6289388	2R_6289388_SNP [dm3] 2R_10401883_SNP [dm6]	G	A	4.889e^-5	0.267	INTRON CG42732
3R	25875530	3R_25875530_INS [dm3] 3R_30049808_INS [dm6]	G	GTAGG	4.893e^-5	0.267	INTRON CG15528 & 1 other EXON CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5850108	X_5850108_INS [dm3] X_5956075_INS [dm6]	G	GAT	4.900e^-5	0.267	INTRON CG6067
2L	10776291	2L_10776291_SNP [dm3] 2L_10776291_SNP [dm6]	G	A	4.906e^-5	0.267	INTRON CG31869
X	12186139	X_12186139_DEL [dm3] X_12292106_DEL [dm6]	GG	G	4.934e^-5	0.267	INTRON Ten-a
X	12377374	X_12377374_SNP [dm3] X_12483341_SNP [dm6]	C	T	4.948e^-5	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20727238	3L_20727238_SNP [dm3] 3L_20734138_SNP [dm6]	G	T	4.952e^-5	0.267	INTRON CG13252
2L	3179240	2L_3179240_SNP [dm3] 2L_3179240_SNP [dm6]	C	T	4.959e^-5	0.267	INTRON CG34393
2L	14972782	2L_14972782_SNP [dm3] 2L_14972782_SNP [dm6]	A	C	4.968e^-5	0.267	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9333262	3L_9333262_SNP [dm3] 3L_9340162_SNP [dm6]	G	A	4.977e^-5	0.267	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16763709	3R_16763709_SNP [dm3] 3R_20937987_SNP [dm6]	C	A	5.014e^-5	0.268	INTRON CG31191
3L	2384913	3L_2384913_SNP [dm3] 3L_2384913_SNP [dm6]	T	C	5.074e^-5	0.268	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18065671	X_18065671_SNP [dm3] X_18171638_SNP [dm6]	C	T	5.087e^-5	0.268	UTR_3_PRIME Frq1
2L	4145892	2L_4145892_SNP [dm3] 2L_4145892_SNP [dm6]	G	A	5.108e^-5	0.268	INTERGENIC
4	828447	4_828447_SNP [dm3] 4_807821_SNP [dm6]	T	A	5.112e^-5	0.268	UPSTREAM Sox102F INTRON Sox102F	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13551609	2R_13551609_SNP [dm3] 2R_17664104_SNP [dm6]	T	A	5.121e^-5	0.268	INTRON CCHa1-R
3L	12637738	3L_12637738_SNP [dm3] 3L_12644638_SNP [dm6]	G	T	5.123e^-5	0.268	INTRON CR32111	regulatory region REDfly_CRMs
2L	11892141	2L_11892141_SNP [dm3] 2L_11892141_SNP [dm6]	C	T	5.125e^-5	0.268	INTRON Pde1c
2L	3590007	2L_3590007_SNP [dm3] 2L_3590007_SNP [dm6]	G	A	5.134e^-5	0.268	EXON CR43823
2L	21836593	2L_21836593_SNP [dm3] 2L_21836593_SNP [dm6]	G	A	5.152e^-5	0.268	UTR_3_PRIME tsh	TF binding site BDTNP1_TFBS_da
3R	18839020	3R_18839020_SNP [dm3] 3R_23013298_SNP [dm6]	T	A	5.159e^-5	0.268	UPSTREAM CR44225 INTRON CG6688	TF binding site mE1_TFBS_zfh1
2R	6672105	2R_6672105_SNP [dm3] 2R_10784600_SNP [dm6]	T	A	5.169e^-5	0.268	INTRON CG33144 EXON CR44299
3L	12637694	3L_12637694_SNP [dm3] 3L_12644594_SNP [dm6]	A	G	5.175e^-5	0.268	INTRON CR32111	regulatory region REDfly_CRMs
X	20866409	X_20866409_SNP [dm3] X_20995382_SNP [dm6]	G	T	5.189e^-5	0.268	INTERGENIC
3L	12637736	3L_12637736_SNP [dm3] 3L_12644636_SNP [dm6]	G	A	5.209e^-5	0.268	INTRON CR32111	regulatory region REDfly_CRMs
2R	2774803	2R_2774803_SNP [dm3] 2R_6887298_SNP [dm6]	G	C	5.213e^-5	0.268	NON_SYNONYMOUS_CODING Spn42De
2L	5578101	2L_5578101_SNP [dm3] 2L_5578101_SNP [dm6]	G	C	5.238e^-5	0.268	INTERGENIC
2L	10815091	2L_10815091_SNP [dm3] 2L_10815091_SNP [dm6]	G	A	5.270e^-5	0.269	INTRON Nos
2L	4520208	2L_4520208_SNP [dm3] 2L_4520208_SNP [dm6]	A	G	5.279e^-5	0.269	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20088615	2L_20088615_SNP [dm3] 2L_20088615_SNP [dm6]	C	T	5.290e^-5	0.269	SYNONYMOUS_CODING neb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21050757	2L_21050757_DEL [dm3] 2L_21050757_DEL [dm6]	TTATAGAT	T	5.334e^-5	0.27	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3952274	2L_3952274_SNP [dm3] 2L_3952274_SNP [dm6]	G	A	5.345e^-5	0.27	INTRON fred
2L	3952293	2L_3952293_SNP [dm3] 2L_3952293_SNP [dm6]	C	A	5.345e^-5	0.27	INTRON fred
2L	11391595	2L_11391595_SNP [dm3] 2L_11391595_SNP [dm6]	C	T	5.368e^-5	0.27	INTRON CR43681	regulatory region REDfly_CRMs
3L	8373151	3L_8373151_SNP [dm3] 3L_8380051_SNP [dm6]	C	T	5.414e^-5	0.272	UTR_3_PRIME ImpE1 INTRON ImpE1
X	1864241	X_1864241_SNP [dm3] X_1970208_SNP [dm6]	T	G	5.436e^-5	0.272	INTRON Hr4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12360094	2R_12360094_SNP [dm3] 2R_16472589_SNP [dm6]	T	C	5.465e^-5	0.272	INTERGENIC
2R	17070153	2R_17070153_SNP [dm3] 2R_21182648_SNP [dm6]	T	C	5.489e^-5	0.272	UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9333417	3L_9333417_SNP [dm3] 3L_9340317_SNP [dm6]	G	A	5.493e^-5	0.272	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9758972	2L_9758972_SNP [dm3] 2L_9758972_SNP [dm6]	C	T	5.570e^-5	0.272	INTRON zf30C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	9429124	2L_9429124_SNP [dm3] 2L_9429124_SNP [dm6]	G	T	5.579e^-5	0.272	SYNONYMOUS_CODING FucTB DOWNSTREAM CG42847
2R	3812654	2R_3812654_SNP [dm3] 2R_7925149_SNP [dm6]	A	T	5.582e^-5	0.272	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3712998	2L_3712998_SNP [dm3] 2L_3712998_SNP [dm6]	C	G	5.588e^-5	0.272	UTR_5_PRIME CG31955 UPSTREAM CG2818 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10503194	3L_10503194_SNP [dm3] 3L_10510094_SNP [dm6]	G	A	5.589e^-5	0.272	INTRON A2bp1
X	1846193	X_1846193_SNP [dm3] X_1952160_SNP [dm6]	T	A	5.590e^-5	0.272	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16193191	2L_16193191_SNP [dm3] 2L_16193191_SNP [dm6]	A	G	5.599e^-5	0.272	INTERGENIC
3R	3926019	3R_3926019_SNP [dm3] 3R_8100297_SNP [dm6]	G	C	5.605e^-5	0.272	NON_SYNONYMOUS_CODING CG7900	TF binding site BDTNP1_TFBS_bcd
3L	10503120	3L_10503120_SNP [dm3] 3L_10510020_SNP [dm6]	A	G	5.630e^-5	0.272	INTRON A2bp1
3L	10503036	3L_10503036_SNP [dm3] 3L_10509936_SNP [dm6]	T	A	5.656e^-5	0.272	INTRON A2bp1
X	2944848	X_2944848_SNP [dm3] X_3050815_SNP [dm6]	G	A	5.669e^-5	0.272	INTRON kirre
2R	20173752	2R_20173752_SNP [dm3] 2R_24286229_SNP [dm6]	G	A	5.679e^-5	0.272	INTRON nvy	TF binding site mE1_TFBS_chinmo
3L	17216457	3L_17216457_SNP [dm3] 3L_17223357_SNP [dm6]	T	A	5.694e^-5	0.272	INTRON Rbp6
2L	8702844	2L_8702844_INS [dm3] 2L_8702844_INS [dm6]	A	AA	5.705e^-5	0.272	UPSTREAM CR44992 INTRON Hnf4
2L	21862436	2L_21862436_SNP [dm3] 2L_21862436_SNP [dm6]	T	A	5.713e^-5	0.272	INTRON CR44917
3R	13850038	3R_13850038_SNP [dm3] 3R_18024316_SNP [dm6]	G	C	5.724e^-5	0.272	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
2L	3311728	2L_3311728_DEL [dm3] 2L_3311728_DEL [dm6]	AC	A	5.733e^-5	0.272	DOWNSTREAM CG15406 INTRON CG3277
2R	10605263	2R_10605263_SNP [dm3] 2R_14717758_SNP [dm6]	T	A	5.766e^-5	0.273	INTERGENIC
2L	3597291	2L_3597291_SNP [dm3] 2L_3597291_SNP [dm6]	G	T	5.768e^-5	0.273	INTERGENIC
3L	20571364	3L_20571364_SNP [dm3] 3L_20578264_SNP [dm6]	C	T	5.801e^-5	0.273	INTERGENIC
2R	17661451	2R_17661451_SNP [dm3] 2R_21773946_SNP [dm6]	C	T	5.861e^-5	0.276	SYNONYMOUS_CODING CG4021
2L	14846699	2L_14846699_SNP [dm3] 2L_14846699_SNP [dm6]	T	A	5.892e^-5	0.276	INTRON CG15279
2L	9930440	2L_9930440_SNP [dm3] 2L_9930440_SNP [dm6]	G	T	5.919e^-5	0.277	UPSTREAM CG42367 DOWNSTREAM CG42366 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14849451	2L_14849451_INS [dm3] 2L_14849451_INS [dm6]	A	AATAATTGCTCAGATATACT...	5.938e^-5	0.277	UPSTREAM CG15279 INTRON CG15279
3L	12200931	3L_12200931_SNP [dm3] 3L_12207831_SNP [dm6]	G	A	5.951e^-5	0.277	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad
2R	5733469	2R_5733469_SNP [dm3] 2R_9845964_SNP [dm6]	C	G	6.020e^-5	0.278	SYNONYMOUS_CODING Orc6 DOWNSTREAM CG1667 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	2089885	X_2089885_SNP [dm3] X_2195852_SNP [dm6]	C	A	6.028e^-5	0.278	INTRON Mct1
3R	25150759	3R_25150759_SNP [dm3] 3R_29325037_SNP [dm6]	C	T	6.030e^-5	0.278	INTERGENIC
2L	12767641	2L_12767641_SNP [dm3] 2L_12767641_SNP [dm6]	G	T	6.053e^-5	0.278	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	9396736	2L_9396736_SNP [dm3] 2L_9396736_SNP [dm6]	A	G	6.061e^-5	0.278	DOWNSTREAM CG4438 INTRON Shawl
2L	9396737	2L_9396737_SNP [dm3] 2L_9396737_SNP [dm6]	T	A	6.061e^-5	0.278	DOWNSTREAM CG4438 INTRON Shawl
X	7969009	X_7969009_SNP [dm3] X_8074976_SNP [dm6]	T	C	6.115e^-5	0.28	SYNONYMOUS_CODING Upf2 UPSTREAM CG1571	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12637735	3L_12637735_SNP [dm3] 3L_12644635_SNP [dm6]	T	A	6.167e^-5	0.28	INTRON CR32111	regulatory region REDfly_CRMs
2R	7277297	2R_7277297_DEL [dm3] 2R_11389792_DEL [dm6]	TTACCATTGAT...	T	6.171e^-5	0.28	INTRON sprt
3L	5246551	3L_5246551_DEL [dm3] 3L_5253451_DEL [dm6]	TGCTA	C	6.188e^-5	0.28	INTRON shep
3L	5246505	3L_5246505_SNP [dm3] 3L_5253405_SNP [dm6]	A	T	6.189e^-5	0.28	INTRON shep
2R	18887951	2R_18887951_SNP [dm3] 2R_23000428_SNP [dm6]	G	A	6.204e^-5	0.28	INTRON twi
2L	19373827	2L_19373827_INS [dm3] 2L_19373827_INS [dm6]	C	CA	6.213e^-5	0.28	INTERGENIC
X	15452793	X_15452793_SNP [dm3] X_15558760_SNP [dm6]	C	A	6.227e^-5	0.28	INTERGENIC
3L	9338527	3L_9338527_SNP [dm3] 3L_9345427_SNP [dm6]	G	A	6.246e^-5	0.28	INTRON PGRP-LC
2R	14112786	2R_14112786_SNP [dm3] 2R_18225281_SNP [dm6]	C	T	6.269e^-5	0.28	INTERGENIC
3R	16763626	3R_16763626_SNP [dm3] 3R_20937904_SNP [dm6]	C	G	6.271e^-5	0.28	INTRON CG31191
X	5850037	X_5850037_SNP [dm3] X_5956004_SNP [dm6]	G	A	6.331e^-5	0.282	INTRON CG6067
X	10183008	X_10183008_SNP [dm3] X_10288975_SNP [dm6]	T	C	6.338e^-5	0.282	INTRON alpha-Man-I
2R	5791824	2R_5791824_SNP [dm3] 2R_9904319_SNP [dm6]	A	C	6.378e^-5	0.283	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	13218732	2R_13218732_SNP [dm3] 2R_17331227_SNP [dm6]	T	A	6.397e^-5	0.283	INTRON mbl	TF binding site BDTNP1_TFBS_dl
2L	5578104	2L_5578104_SNP [dm3] 2L_5578104_SNP [dm6]	G	T	6.431e^-5	0.283	INTERGENIC
3L	4318147	3L_4318147_SNP [dm3] 3L_4318147_SNP [dm6]	G	T	6.445e^-5	0.283	NON_SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
2R	17734975	2R_17734975_DEL [dm3] 2R_21847470_DEL [dm6]	CC	T	6.445e^-5	0.283	DOWNSTREAM tRNA:CR30406 INTERGENIC
2L	20702442	2L_20702442_SNP [dm3] 2L_20702442_SNP [dm6]	T	C	6.466e^-5	0.283	INTRON Hr38
2L	4342130	2L_4342130_SNP [dm3] 2L_4342130_SNP [dm6]	G	A	6.487e^-5	0.283	SYNONYMOUS_CODING Atet
2L	16653483	2L_16653483_SNP [dm3] 2L_16653483_SNP [dm6]	T	A	6.499e^-5	0.283	INTRON CG42389	TF binding site mE1_TFBS_inv
2R	14226066	2R_14226066_SNP [dm3] 2R_18338561_SNP [dm6]	C	T	6.501e^-5	0.283	INTRON sbb	TF binding site BDTNP1_TFBS_dl
2R	13365662	2R_13365662_SNP [dm3] 2R_17478157_SNP [dm6]	T	A	6.510e^-5	0.283	UTR_3_PRIME CG43110 UPSTREAM veil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12637725	3L_12637725_SNP [dm3] 3L_12644625_SNP [dm6]	C	T	6.543e^-5	0.283	INTRON CR32111	regulatory region REDfly_CRMs
2L	15001133	2L_15001133_INS [dm3] 2L_15001133_INS [dm6]	A	ATACGCACTTAATTTAA...	6.585e^-5	0.284	INTERGENIC
2L	15001136	2L_15001136_SNP [dm3] 2L_15001136_SNP [dm6]	A	T	6.585e^-5	0.284	INTERGENIC
2L	20092527	2L_20092527_SNP [dm3] 2L_20092527_SNP [dm6]	C	G	6.606e^-5	0.284	NON_SYNONYMOUS_CODING CG10721 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17665025	2R_17665025_DEL [dm3] 2R_21777520_DEL [dm6]	ACATTGAAGATCTTGCA...	A	6.715e^-5	0.287	INTERGENIC
2R	16190192	2R_16190192_DEL [dm3] 2R_20302687_DEL [dm6]	CCACCACC	C	6.734e^-5	0.287	UPSTREAM CR44641 EXON CR44640
2L	875558	2L_875558_SNP [dm3] 2L_875558_SNP [dm6]	A	G	6.735e^-5	0.287	SYNONYMOUS_CODING PNUTS	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9841308	3R_9841308_SNP [dm3] 3R_14015586_SNP [dm6]	T	A	6.736e^-5	0.287	INTRON rdx
3L	3775066	3L_3775066_SNP [dm3] 3L_3775066_SNP [dm6]	T	A	6.749e^-5	0.287	INTRON CG32264
3L	14855958	3L_14855958_SNP [dm3] 3L_14862858_SNP [dm6]	A	T	6.765e^-5	0.287	INTRON CG17839	TF binding site mE1_TFBS_inv
2R	1135372	2R_1135372_SNP [dm3] 2R_5247867_SNP [dm6]	T	C	6.792e^-5	0.288	NON_SYNONYMOUS_CODING Nipped-A INTRON Nipped-A	transposable element FlyBase
2L	16914073	2L_16914073_SNP [dm3] 2L_16914073_SNP [dm6]	C	A	6.858e^-5	0.29	NON_SYNONYMOUS_CODING tweek
2L	6042268	2L_6042268_SNP [dm3] 2L_6042268_SNP [dm6]	A	G	6.885e^-5	0.29	SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7933465	3L_7933465_SNP [dm3] 3L_7940365_SNP [dm6]	G	T	6.888e^-5	0.29	INTERGENIC
3L	5246514	3L_5246514_SNP [dm3] 3L_5253414_SNP [dm6]	T	C	6.912e^-5	0.29	INTRON shep
3L	12638276	3L_12638276_DEL [dm3] 3L_12645176_DEL [dm6]	AGCTTCGGAA	A	6.955e^-5	0.29	EXON CR32111
2R	9442395	2R_9442395_SNP [dm3] 2R_13554890_SNP [dm6]	T	C	6.957e^-5	0.29	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	19776224	2L_19776224_SNP [dm3] 2L_19776224_SNP [dm6]	G	A	6.958e^-5	0.29	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
3R	9356206	3R_9356206_SNP [dm3] 3R_13530484_SNP [dm6]	G	T	6.975e^-5	0.29	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15001140	2L_15001140_SNP [dm3] 2L_15001140_SNP [dm6]	T	G	6.981e^-5	0.29	INTERGENIC
2L	15001054	2L_15001054_SNP [dm3] 2L_15001054_SNP [dm6]	T	A	7.023e^-5	0.29	INTERGENIC
2R	10580084	2R_10580084_SNP [dm3] 2R_14692579_SNP [dm6]	C	T	7.027e^-5	0.29	INTRON mspo
2L	1621069	2L_1621069_SNP [dm3] 2L_1621069_SNP [dm6]	G	C	7.032e^-5	0.29	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9557598	3L_9557598_SNP [dm3] 3L_9564498_SNP [dm6]	G	T	7.062e^-5	0.29	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3165408	2L_3165408_SNP [dm3] 2L_3165408_SNP [dm6]	C	T	7.089e^-5	0.29	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18266888	2R_18266888_DEL [dm3] 2R_22379383_DEL [dm6]	TCTT	T	7.108e^-5	0.29	UPSTREAM wrapper & 1 other DOWNSTREAM Rtf1 INTERGENIC
2R	18266895	2R_18266895_SNP [dm3] 2R_22379390_SNP [dm6]	G	A	7.108e^-5	0.29	UPSTREAM wrapper & 1 other DOWNSTREAM Rtf1 INTERGENIC
3L	22183216	3L_22183216_SNP [dm3] 3L_22190116_SNP [dm6]	A	C	7.124e^-5	0.291	INTRON olf413
2L	4319245	2L_4319245_SNP [dm3] 2L_4319245_SNP [dm6]	C	T	7.153e^-5	0.291	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
2R	7118089	2R_7118089_SNP [dm3] 2R_11230584_SNP [dm6]	C	A	7.166e^-5	0.291	INTRON metro	TF binding site mE1_TFBS_chinmo
2L	9588298	2L_9588298_SNP [dm3] 2L_9588298_SNP [dm6]	G	A	7.191e^-5	0.291	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9838714	2L_9838714_SNP [dm3] 2L_9838714_SNP [dm6]	A	C	7.253e^-5	0.293	INTRON nAChRalpha6
2L	4319266	2L_4319266_SNP [dm3] 2L_4319266_SNP [dm6]	C	T	7.277e^-5	0.293	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
2L	3172983	2L_3172983_DEL [dm3] 2L_3172983_DEL [dm6]	AG	A	7.295e^-5	0.293	UPSTREAM CR44003 & 1 other DOWNSTREAM tRNA:S7:23Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19585112	3R_19585112_SNP [dm3] 3R_23759390_SNP [dm6]	C	A	7.297e^-5	0.293	NON_SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site mE1_TFBS_sens
3R	13660865	3R_13660865_SNP [dm3] 3R_17835143_SNP [dm6]	A	G	7.308e^-5	0.293	INTRON tinc
2L	21858998	2L_21858998_SNP [dm3] 2L_21858998_SNP [dm6]	C	T	7.316e^-5	0.293	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	12638634	3L_12638634_SNP [dm3] 3L_12645534_SNP [dm6]	C	A	7.363e^-5	0.294	EXON CR32111
2L	21806580	2L_21806580_SNP [dm3] 2L_21806580_SNP [dm6]	T	C	7.399e^-5	0.295	INTERGENIC
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	7.427e^-5	0.295	INTRON Rdl
2L	4319286	2L_4319286_SNP [dm3] 2L_4319286_SNP [dm6]	T	A	7.448e^-5	0.295	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
2L	4319246	2L_4319246_SNP [dm3] 2L_4319246_SNP [dm6]	A	T	7.463e^-5	0.295	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
2R	14188457	2R_14188457_INS [dm3] 2R_18300952_INS [dm6]	T	TG	7.469e^-5	0.295	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3092953	2R_3092953_SNP [dm3] 2R_7205448_SNP [dm6]	G	A	7.549e^-5	0.297	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20091894	2L_20091894_SNP [dm3] 2L_20091894_SNP [dm6]	G	A	7.557e^-5	0.297	NON_SYNONYMOUS_CODING CG10721 UPSTREAM CG10747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	1438925	X_1438925_DEL [dm3] X_1544892_DEL [dm6]	TT	T	7.579e^-5	0.297	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	21862356	2L_21862356_SNP [dm3] 2L_21862356_SNP [dm6]	A	C	7.600e^-5	0.297	INTRON CR44917
3L	8879063	3L_8879063_SNP [dm3] 3L_8885963_SNP [dm6]	T	G	7.607e^-5	0.297	INTRON dally
2L	20087275	2L_20087275_SNP [dm3] 2L_20087275_SNP [dm6]	T	A	7.623e^-5	0.297	INTRON neb
2L	3001803	2L_3001803_SNP [dm3] 2L_3001803_SNP [dm6]	A	C	7.652e^-5	0.297	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	6752857	2L_6752857_SNP [dm3] 2L_6752857_SNP [dm6]	C	T	7.695e^-5	0.297	INTRON CG11221
2R	17389106	2R_17389106_SNP [dm3] 2R_21501601_SNP [dm6]	T	C	7.730e^-5	0.297	UPSTREAM MESK2 INTRON TAF1C-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	21875555	2L_21875555_SNP [dm3] 2L_21875555_SNP [dm6]	T	A	7.765e^-5	0.297	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	6003674	X_6003674_SNP [dm3] X_6109641_SNP [dm6]	T	A	7.768e^-5	0.297	NON_SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9562033	3R_9562033_SNP [dm3] 3R_13736311_SNP [dm6]	T	G	7.771e^-5	0.297	INTRON CG34383
3L	12743488	3L_12743488_DEL [dm3] 3L_12750388_DEL [dm6]	TAAAGGTG	T	7.787e^-5	0.297	UPSTREAM CG10984 & 1 other INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	1431149	X_1431149_SNP [dm3] X_1537116_SNP [dm6]	A	G	7.794e^-5	0.297	INTRON Mur2B
2R	6671752	2R_6671752_SNP [dm3] 2R_10784247_SNP [dm6]	C	A	7.806e^-5	0.297	INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	9442274	2R_9442274_SNP [dm3] 2R_13554769_SNP [dm6]	T	A	7.826e^-5	0.297	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	5250461	3L_5250461_DEL [dm3] 3L_5257361_DEL [dm6]	TA	T	7.828e^-5	0.297	INTRON shep
X	2306762	X_2306762_SNP [dm3] X_2412729_SNP [dm6]	G	T	7.829e^-5	0.297	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	15663649	3L_15663649_SNP [dm3] 3L_15670549_SNP [dm6]	T	A	7.830e^-5	0.297	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
2R	3130181	2R_3130181_DEL [dm3] 2R_7242676_DEL [dm6]	ACTTGTGTGGGAT...	A	7.872e^-5	0.298	DOWNSTREAM Ady43A INTERGENIC
2L	10814374	2L_10814374_SNP [dm3] 2L_10814374_SNP [dm6]	C	T	7.874e^-5	0.298	INTRON Nos
3R	13653406	3R_13653406_SNP [dm3] 3R_17827684_SNP [dm6]	C	G	7.921e^-5	0.299	INTRON tinc	TF binding site mE1_TFBS_cad
X	367858	X_367858_SNP [dm3] X_473825_SNP [dm6]	G	T	7.939e^-5	0.299	NON_SYNONYMOUS_CODING ebo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11621738	2L_11621738_SNP [dm3] 2L_11621738_SNP [dm6]	G	A	7.951e^-5	0.299	UTR_5_PRIME kek2
3L	13534096	3L_13534096_SNP [dm3] 3L_13540996_SNP [dm6]	A	G	8.035e^-5	0.301	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	3812913	2R_3812913_SNP [dm3] 2R_7925408_SNP [dm6]	A	T	8.072e^-5	0.301	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9226818	3R_9226818_SNP [dm3] 3R_13401096_SNP [dm6]	T	A	8.077e^-5	0.301	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9629990	3R_9629990_DEL [dm3] 3R_13804268_DEL [dm6]	CGC	C	8.083e^-5	0.301	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20418277	2L_20418277_SNP [dm3] 2L_20418277_SNP [dm6]	A	G	8.160e^-5	0.302	UPSTREAM snoRNA:Psi18S-525a & 5 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9948927	2L_9948927_SNP [dm3] 2L_9948927_SNP [dm6]	C	A	8.176e^-5	0.302	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9146426	3L_9146426_SNP [dm3] 3L_9153326_SNP [dm6]	T	C	8.180e^-5	0.302	INTRON Rdl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21793522	2L_21793522_SNP [dm3] 2L_21793522_SNP [dm6]	G	A	8.224e^-5	0.302	INTRON CG31612	TF binding site BDTNP1_TFBS_z
X	607456	X_607456_SNP [dm3] X_713423_SNP [dm6]	T	C	8.230e^-5	0.302	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3132503	2R_3132503_SNP [dm3] 2R_7244998_SNP [dm6]	C	T	8.234e^-5	0.302	NON_SYNONYMOUS_CODING Ady43A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13074646	2L_13074646_SNP [dm3] 2L_13074646_SNP [dm6]	C	T	8.257e^-5	0.302	INTERGENIC
2R	2882218	2R_2882218_SNP [dm3] 2R_6994713_SNP [dm6]	T	C	8.277e^-5	0.302	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
3L	8438521	3L_8438521_SNP [dm3] 3L_8445421_SNP [dm6]	C	T	8.279e^-5	0.302	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3L	8439971	3L_8439971_SNP [dm3] 3L_8446871_SNP [dm6]	C	T	8.279e^-5	0.302	INTRON CG6983
3L	12245984	3L_12245984_DEL [dm3] 3L_12252884_DEL [dm6]	TCACATTTCTTGGACCCAT...	T	8.295e^-5	0.302	INTRON app
2L	13074652	2L_13074652_SNP [dm3] 2L_13074652_SNP [dm6]	C	T	8.302e^-5	0.302	INTERGENIC
3R	9990697	3R_9990697_SNP [dm3] 3R_14164975_SNP [dm6]	C	A	8.324e^-5	0.302	DOWNSTREAM Dop1R1 INTERGENIC
2L	21752747	2L_21752747_SNP [dm3] 2L_21752747_SNP [dm6]	G	C	8.330e^-5	0.302	INTRON step	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	8438520	3L_8438520_SNP [dm3] 3L_8445420_SNP [dm6]	T	A	8.369e^-5	0.303	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3L	8829998	3L_8829998_SNP [dm3] 3L_8836898_SNP [dm6]	C	T	8.416e^-5	0.303	SYNONYMOUS_CODING CG32026 INTRON dally
3R	13652341	3R_13652341_SNP [dm3] 3R_17826619_SNP [dm6]	C	T	8.426e^-5	0.303	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	9754953	2L_9754953_SNP [dm3] 2L_9754953_SNP [dm6]	T	G	8.438e^-5	0.303	INTERGENIC
2L	4520513	2L_4520513_SNP [dm3] 2L_4520513_SNP [dm6]	G	A	8.452e^-5	0.303	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7478140	2R_7478140_SNP [dm3] 2R_11590635_SNP [dm6]	T	C	8.476e^-5	0.303	DOWNSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18045677	2R_18045677_SNP [dm3] 2R_22158172_SNP [dm6]	G	A	8.502e^-5	0.303	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20088490	2L_20088490_SNP [dm3] 2L_20088490_SNP [dm6]	A	G	8.509e^-5	0.303	NON_SYNONYMOUS_CODING neb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19941848	2L_19941848_SNP [dm3] 2L_19941848_SNP [dm6]	C	G	8.509e^-5	0.303	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11613619	2L_11613619_SNP [dm3] 2L_11613619_SNP [dm6]	C	T	8.525e^-5	0.303	INTRON kek2
2R	2739458	2R_2739458_SNP [dm3] 2R_6851953_SNP [dm6]	A	T	8.567e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14851583	2L_14851583_SNP [dm3] 2L_14851583_SNP [dm6]	A	T	8.573e^-5	0.303	UTR_5_PRIME CG15279	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	18881882	2L_18881882_SNP [dm3] 2L_18881882_SNP [dm6]	C	T	8.576e^-5	0.303	UPSTREAM tup INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2097202	2L_2097202_SNP [dm3] 2L_2097202_SNP [dm6]	C	T	8.615e^-5	0.303	INTRON dpr3
2L	21823177	2L_21823177_SNP [dm3] 2L_21823177_SNP [dm6]	C	T	8.627e^-5	0.303	DOWNSTREAM CR44786 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10346036	3L_10346036_SNP [dm3] 3L_10352936_SNP [dm6]	A	C	8.667e^-5	0.303	INTRON CR44327
2L	22063201	2L_22063201_SNP [dm3] 2L_22063201_SNP [dm6]	A	G	8.714e^-5	0.303	INTERGENIC
2L	2096529	2L_2096529_SNP [dm3] 2L_2096529_SNP [dm6]	C	G	8.716e^-5	0.303	INTRON dpr3
2L	9588103	2L_9588103_SNP [dm3] 2L_9588103_SNP [dm6]	C	T	8.723e^-5	0.303	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1619902	2L_1619902_SNP [dm3] 2L_1619902_SNP [dm6]	G	A	8.731e^-5	0.303	EXON CR44603
3R	7917570	3R_7917570_SNP [dm3] 3R_12091848_SNP [dm6]	C	A	8.736e^-5	0.303	INTERGENIC
X	1323596	X_1323596_INS [dm3] X_1429563_INS [dm6]	C	CTGGCGATCCTCCCGCTCTT...	8.749e^-5	0.303	INTRON futsch	TF binding site mE1_TFBS_chinmo
2L	11611922	2L_11611922_SNP [dm3] 2L_11611922_SNP [dm6]	A	C	8.752e^-5	0.303	UPSTREAM spag4 INTRON kek2
3L	3679580	3L_3679580_SNP [dm3] 3L_3679580_SNP [dm6]	G	A	8.755e^-5	0.303	INTERGENIC
2R	6666379	2R_6666379_SNP [dm3] 2R_10778874_SNP [dm6]	G	A	8.785e^-5	0.303	INTRON CG33144	TF binding site mE1_TFBS_kn
2L	4319222	2L_4319222_SNP [dm3] 2L_4319222_SNP [dm6]	C	T	8.795e^-5	0.303	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
X	2944587	X_2944587_SNP [dm3] X_3050554_SNP [dm6]	G	A	8.823e^-5	0.303	INTRON kirre
2L	21760062	2L_21760062_SNP [dm3] 2L_21760062_SNP [dm6]	G	T	8.827e^-5	0.303	INTRON CG1416
2R	17941384	2R_17941384_SNP [dm3] 2R_22053879_SNP [dm6]	T	C	8.829e^-5	0.303	INTERGENIC
3L	9304144	3L_9304144_SNP [dm3] 3L_9311044_SNP [dm6]	A	C	8.831e^-5	0.303	INTERGENIC
2R	2463585	2R_2463585_SNP [dm3] 2R_6576080_SNP [dm6]	C	A	8.851e^-5	0.303	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19882198	2L_19882198_SNP [dm3] 2L_19882198_SNP [dm6]	C	G	8.906e^-5	0.303	INTRON sick
2L	11274966	2L_11274966_SNP [dm3] 2L_11274966_SNP [dm6]	A	G	8.931e^-5	0.303	NON_SYNONYMOUS_CODING cana	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15052298	2L_15052298_INS [dm3] 2L_15052298_INS [dm6]	T	ATG	8.944e^-5	0.303	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7863533	3L_7863533_SNP [dm3] 3L_7870433_SNP [dm6]	A	C	8.947e^-5	0.303	INTRON CG32365
2L	8702537	2L_8702537_SNP [dm3] 2L_8702537_SNP [dm6]	A	C	8.972e^-5	0.303	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	6339718	2L_6339718_SNP [dm3] 2L_6339718_SNP [dm6]	G	A	8.993e^-5	0.303	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	12962784	2L_12962784_DEL [dm3] 2L_12962784_DEL [dm6]	AAAAT	TTTG	9.010e^-5	0.303	INTERGENIC
2R	8535114	2R_8535114_SNP [dm3] 2R_12647609_SNP [dm6]	T	A	9.027e^-5	0.303	INTRON CG8785
X	12468511	X_12468511_SNP [dm3] X_12574478_SNP [dm6]	T	C	9.030e^-5	0.303	INTRON CG11138	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4515495	3L_4515495_SNP [dm3] 3L_4515495_SNP [dm6]	G	T	9.039e^-5	0.303	INTRON Tie
3R	15448752	3R_15448752_SNP [dm3] 3R_19623030_SNP [dm6]	A	G	9.060e^-5	0.303	INTRON CG6231
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	9.061e^-5	0.303	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	18061084	2R_18061084_SNP [dm3] 2R_22173579_SNP [dm6]	G	T	9.064e^-5	0.303	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
2R	5794926	2R_5794926_SNP [dm3] 2R_9907421_SNP [dm6]	G	T	9.079e^-5	0.303	INTRON FMRFa	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1933470	2L_1933470_SNP [dm3] 2L_1933470_SNP [dm6]	C	A	9.095e^-5	0.303	INTRON CG7337
2R	3130158	2R_3130158_SNP [dm3] 2R_7242653_SNP [dm6]	G	T	9.151e^-5	0.303	DOWNSTREAM Ady43A INTERGENIC
2L	8048524	2L_8048524_SNP [dm3] 2L_8048524_SNP [dm6]	C	T	9.155e^-5	0.303	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	11618511	2L_11618511_SNP [dm3] 2L_11618511_SNP [dm6]	G	T	9.163e^-5	0.303	INTRON kek2
2L	9399117	2L_9399117_SNP [dm3] 2L_9399117_SNP [dm6]	C	T	9.170e^-5	0.303	INTRON Shawl
3L	4515372	3L_4515372_SNP [dm3] 3L_4515372_SNP [dm6]	C	G	9.170e^-5	0.303	INTRON Tie
2L	21752713	2L_21752713_SNP [dm3] 2L_21752713_SNP [dm6]	T	C	9.244e^-5	0.305	INTRON step	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	7710491	2L_7710491_SNP [dm3] 2L_7710491_SNP [dm6]	C	A	9.286e^-5	0.305	NON_SYNONYMOUS_CODING Tep3 UPSTREAM Ntl & 2 others	TF binding site mE1_TFBS_cad
2L	20089749	2L_20089749_SNP [dm3] 2L_20089749_SNP [dm6]	A	G	9.296e^-5	0.305	UTR_3_PRIME CG10747 DOWNSTREAM neb	TF binding site mE1_TFBS_cad
2L	16914169	2L_16914169_SNP [dm3] 2L_16914169_SNP [dm6]	T	C	9.366e^-5	0.307	SYNONYMOUS_CODING tweek
2R	9442240	2R_9442240_SNP [dm3] 2R_13554735_SNP [dm6]	A	G	9.416e^-5	0.308	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	12442544	2R_12442544_SNP [dm3] 2R_16555039_SNP [dm6]	T	C	9.433e^-5	0.308	SYNONYMOUS_CODING Syn2
2L	18659816	2L_18659816_SNP [dm3] 2L_18659816_SNP [dm6]	T	C	9.458e^-5	0.309	INTRON MESR3	TF binding site mE1_TFBS_chinmo
3R	7088155	3R_7088155_SNP [dm3] 3R_11262433_SNP [dm6]	C	T	9.478e^-5	0.309	INTERGENIC
2R	2462385	2R_2462385_SNP [dm3] 2R_6574880_SNP [dm6]	G	C	9.502e^-5	0.309	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17128090	2R_17128090_SNP [dm3] 2R_21240585_SNP [dm6]	A	G	9.556e^-5	0.31	INTRON ASPP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10811369	2L_10811369_SNP [dm3] 2L_10811369_SNP [dm6]	C	A	9.578e^-5	0.31	INTRON Nos
3L	22183215	3L_22183215_SNP [dm3] 3L_22190115_SNP [dm6]	T	A	9.582e^-5	0.31	INTRON olf413
2R	3911049	2R_3911049_DEL [dm3] 2R_8023544_DEL [dm6]	GCTCG	G	9.652e^-5	0.312	EXON CR45267
2L	16562493	2L_16562493_SNP [dm3] 2L_16562493_SNP [dm6]	T	A	9.682e^-5	0.312	INTRON CG42389
3R	13660976	3R_13660976_SNP [dm3] 3R_17835254_SNP [dm6]	G	A	9.736e^-5	0.312	INTRON tinc
2R	3130175	2R_3130175_SNP [dm3] 2R_7242670_SNP [dm6]	T	G	9.737e^-5	0.312	DOWNSTREAM Ady43A INTERGENIC
2L	2123988	2L_2123988_SNP [dm3] 2L_2123988_SNP [dm6]	G	A	9.743e^-5	0.312	INTERGENIC
2R	16193577	2R_16193577_SNP [dm3] 2R_20306072_SNP [dm6]	G	A	9.822e^-5	0.312	INTRON CG11200
3L	21769166	3L_21769166_SNP [dm3] 3L_21776066_SNP [dm6]	T	C	9.853e^-5	0.312	INTRON CG42689 & 1 other
2L	11881349	2L_11881349_SNP [dm3] 2L_11881349_SNP [dm6]	A	T	9.856e^-5	0.312	INTRON Pde1c	TF binding site mE1_TFBS_inv
2L	9851686	2L_9851686_SNP [dm3] 2L_9851686_SNP [dm6]	A	C	9.867e^-5	0.312	INTRON nAChRalpha6
2L	3030088	2L_3030088_SNP [dm3] 2L_3030088_SNP [dm6]	C	A	9.869e^-5	0.312	NON_SYNONYMOUS_CODING CG17219 UPSTREAM CG3605 & 1 other DOWNSTREAM CR44147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_ttk
X	12165360	X_12165360_SNP [dm3] X_12271327_SNP [dm6]	C	T	9.878e^-5	0.312	INTRON Ten-a
2L	20085358	2L_20085358_DEL [dm3] 2L_20085358_DEL [dm6]	TGGCATTGTGT...	T	9.894e^-5	0.312	UPSTREAM fok INTRON neb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	2879286	2R_2879286_SNP [dm3] 2R_6991781_SNP [dm6]	A	G	9.900e^-5	0.312	UPSTREAM Tsp42Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2876729	2R_2876729_SNP [dm3] 2R_6989224_SNP [dm6]	A	T	9.923e^-5	0.312	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
2L	12213377	2L_12213377_DEL [dm3] 2L_12213377_DEL [dm6]	GAAGTAG	G	9.925e^-5	0.312	INTRON aret
3R	26472215	3R_26472215_SNP [dm3] 3R_30646493_SNP [dm6]	C	T	9.930e^-5	0.312	UPSTREAM CG31013 INTRON PH4alphaPV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1188433	X_1188433_SNP [dm3] X_1294400_SNP [dm6]	C	G	9.946e^-5	0.312	INTRON DAAM	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17660182	2R_17660182_SNP [dm3] 2R_21772677_SNP [dm6]	C	T	9.953e^-5	0.312	UPSTREAM CG4021 INTERGENIC
2L	11615577	2L_11615577_SNP [dm3] 2L_11615577_SNP [dm6]	G	C	9.978e^-5	0.312	INTRON kek2
3R	19018494	3R_19018494_SNP [dm3] 3R_23192772_SNP [dm6]	C	T	9.988e^-5	0.312	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10774211	2L_10774211_SNP [dm3] 2L_10774211_SNP [dm6]	G	A	1.007e^-4	0.313	SYNONYMOUS_CODING CG31869	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	5850243	X_5850243_SNP [dm3] X_5956210_SNP [dm6]	T	G	1.009e^-4	0.313	INTRON CG6067
X	5850244	X_5850244_SNP [dm3] X_5956211_SNP [dm6]	T	G	1.009e^-4	0.313	INTRON CG6067
3L	16461833	3L_16461833_SNP [dm3] 3L_16468733_SNP [dm6]	T	C	1.010e^-4	0.313	INTRON CG33158	TF binding site mE1_TFBS_inv
2L	3864736	2L_3864736_SNP [dm3] 2L_3864736_SNP [dm6]	C	T	1.010e^-4	0.313	SYNONYMOUS_CODING CG3964
2L	15139025	2L_15139025_DEL [dm3] 2L_15139025_DEL [dm6]	CTCATAATGATG...	C	1.011e^-4	0.313	INTERGENIC
3L	20929951	3L_20929951_SNP [dm3] 3L_20936851_SNP [dm6]	C	A	1.018e^-4	0.314	INTRON fng
2L	12869914	2L_12869914_SNP [dm3] 2L_12869914_SNP [dm6]	G	T	1.019e^-4	0.314	INTERGENIC
X	17712545	X_17712545_DEL [dm3] X_17818512_DEL [dm6]	TT	T	1.023e^-4	0.315	DOWNSTREAM CG12986 INTERGENIC
3L	4822961	3L_4822961_SNP [dm3] 3L_4822961_SNP [dm6]	A	G	1.025e^-4	0.315	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20534506	3R_20534506_DEL [dm3] 3R_24708784_DEL [dm6]	CAC	C	1.032e^-4	0.317	UTR_3_PRIME slo DOWNSTREAM slo
2R	16452467	2R_16452467_DEL [dm3] 2R_20564962_DEL [dm6]	AAGCACTCGAA...	A	1.034e^-4	0.317	INTRON qsm
2R	17389148	2R_17389148_SNP [dm3] 2R_21501643_SNP [dm6]	A	C	1.038e^-4	0.317	UTR_5_PRIME TAF1C-like UPSTREAM MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18262433	3L_18262433_SNP [dm3] 3L_18269333_SNP [dm6]	C	T	1.038e^-4	0.317	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	2728050	2R_2728050_DEL [dm3] 2R_6840545_DEL [dm6]	CGGG	A	1.039e^-4	0.317	UPSTREAM CR44166 INTERGENIC
2L	17793869	2L_17793869_SNP [dm3] 2L_17793869_SNP [dm6]	A	G	1.040e^-4	0.317	DOWNSTREAM CR43419 INTRON CadN2
2R	17389139	2R_17389139_SNP [dm3] 2R_21501634_SNP [dm6]	C	A	1.043e^-4	0.317	UTR_5_PRIME TAF1C-like UPSTREAM MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22183219	3L_22183219_DEL [dm3] 3L_22190119_DEL [dm6]	CCC	C	1.049e^-4	0.317	INTRON olf413
X	3030064	X_3030064_SNP [dm3] X_3136031_SNP [dm6]	C	T	1.054e^-4	0.317	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6356883	2L_6356883_SNP [dm3] 2L_6356883_SNP [dm6]	T	C	1.055e^-4	0.317	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	2706614	2R_2706614_SNP [dm3] 2R_6819109_SNP [dm6]	G	T	1.061e^-4	0.317	DOWNSTREAM koi INTERGENIC
3L	8687602	3L_8687602_SNP [dm3] 3L_8694502_SNP [dm6]	G	A	1.062e^-4	0.317	INTERGENIC
2L	14348311	2L_14348311_SNP [dm3] 2L_14348311_SNP [dm6]	C	G	1.063e^-4	0.317	SYNONYMOUS_CODING mTTF UPSTREAM CR44850 DOWNSTREAM l_2_34Fc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
2L	21699809	2L_21699809_SNP [dm3] 2L_21699809_SNP [dm6]	G	C	1.064e^-4	0.317	INTRON CG31619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7958890	3L_7958890_SNP [dm3] 3L_7965790_SNP [dm6]	A	G	1.065e^-4	0.317	INTERGENIC
2L	14849690	2L_14849690_SNP [dm3] 2L_14849690_SNP [dm6]	A	C	1.066e^-4	0.317	UPSTREAM CG15279 INTRON CG15279
2L	21770609	2L_21770609_SNP [dm3] 2L_21770609_SNP [dm6]	A	T	1.066e^-4	0.317	INTRON CG31612
2R	20184496	2R_20184496_SNP [dm3] 2R_24296973_SNP [dm6]	C	T	1.066e^-4	0.317	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17593063	2R_17593063_SNP [dm3] 2R_21705558_SNP [dm6]	A	C	1.066e^-4	0.317	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1
2R	2728033	2R_2728033_DEL [dm3] 2R_6840528_DEL [dm6]	ACTATGTCACT...	A	1.067e^-4	0.317	INTERGENIC
2L	9358594	2L_9358594_SNP [dm3] 2L_9358594_SNP [dm6]	A	C	1.068e^-4	0.317	INTERGENIC
2R	16452464	2R_16452464_INS [dm3] 2R_20564959_INS [dm6]	G	GATGCTTC	1.073e^-4	0.319	INTRON qsm
2R	13557062	2R_13557062_SNP [dm3] 2R_17669557_SNP [dm6]	T	G	1.079e^-4	0.319	SYNONYMOUS_CODING CG30108 UPSTREAM CG30109 DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	1620269	2L_1620269_SNP [dm3] 2L_1620269_SNP [dm6]	C	T	1.080e^-4	0.319	EXON CR44603
2R	1772354	2R_1772354_SNP [dm3] 2R_5884849_SNP [dm6]	C	T	1.081e^-4	0.319	UPSTREAM CR44125 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	15001042	2L_15001042_SNP [dm3] 2L_15001042_SNP [dm6]	C	G	1.081e^-4	0.319	INTERGENIC
2L	3589416	2L_3589416_SNP [dm3] 2L_3589416_SNP [dm6]	C	T	1.082e^-4	0.319	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	5535161	2R_5535161_INS [dm3] 2R_9647656_INS [dm6]	A	AA	1.085e^-4	0.319	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22230984	3R_22230984_SNP [dm3] 3R_26405262_SNP [dm6]	C	T	1.093e^-4	0.319	INTERGENIC
3L	7864132	3L_7864132_SNP [dm3] 3L_7871032_SNP [dm6]	G	C	1.093e^-4	0.319	INTRON CG32365
2L	9344683	2L_9344683_SNP [dm3] 2L_9344683_SNP [dm6]	G	A	1.098e^-4	0.319	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
3R	25978567	3R_25978567_SNP [dm3] 3R_30152845_SNP [dm6]	G	A	1.100e^-4	0.319	SYNONYMOUS_CODING CG15529 DOWNSTREAM CG11498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17389142	2R_17389142_SNP [dm3] 2R_21501637_SNP [dm6]	T	G	1.101e^-4	0.319	UTR_5_PRIME TAF1C-like UPSTREAM MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9399253	2L_9399253_SNP [dm3] 2L_9399253_SNP [dm6]	A	G	1.102e^-4	0.319	INTRON Shawl
3L	16359221	3L_16359221_SNP [dm3] 3L_16366121_SNP [dm6]	C	T	1.102e^-4	0.319	SYNONYMOUS_CODING Cpr72Ec DOWNSTREAM Cpr72Eb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1870727	2L_1870727_SNP [dm3] 2L_1870727_SNP [dm6]	T	A	1.102e^-4	0.319	SYNONYMOUS_CODING CG7295 INTRON CG31663
2R	16452487	2R_16452487_SNP [dm3] 2R_20564982_SNP [dm6]	C	T	1.107e^-4	0.319	INTRON qsm
3R	13850033	3R_13850033_SNP [dm3] 3R_18024311_SNP [dm6]	C	T	1.108e^-4	0.319	SYNONYMOUS_CODING CG7794 DOWNSTREAM CG7785	TF binding site mE1_TFBS_cad
2L	9587174	2L_9587174_SNP [dm3] 2L_9587174_SNP [dm6]	A	G	1.108e^-4	0.319	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	9442411	2R_9442411_SNP [dm3] 2R_13554906_SNP [dm6]	G	A	1.109e^-4	0.319	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	11553207	2L_11553207_SNP [dm3] 2L_11553207_SNP [dm6]	G	T	1.110e^-4	0.319	INTERGENIC
3L	12638640	3L_12638640_SNP [dm3] 3L_12645540_SNP [dm6]	T	C	1.112e^-4	0.319	EXON CR32111
2L	6779592	2L_6779592_SNP [dm3] 2L_6779592_SNP [dm6]	C	T	1.112e^-4	0.319	SYNONYMOUS_CODING nrv1
3L	7989817	3L_7989817_SNP [dm3] 3L_7996717_SNP [dm6]	C	G	1.113e^-4	0.319	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	9197156	3R_9197156_SNP [dm3] 3R_13371434_SNP [dm6]	A	G	1.113e^-4	0.319	SYNONYMOUS_CODING Lip3
2L	12869950	2L_12869950_INS [dm3] 2L_12869950_INS [dm6]	A	GC	1.122e^-4	0.32	INTERGENIC
3R	9226901	3R_9226901_SNP [dm3] 3R_13401179_SNP [dm6]	T	A	1.123e^-4	0.32	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	1.124e^-4	0.32	INTRON aret
2L	12767628	2L_12767628_SNP [dm3] 2L_12767628_SNP [dm6]	C	T	1.131e^-4	0.322	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	2508452	3L_2508452_SNP [dm3] 3L_2508452_SNP [dm6]	C	G	1.133e^-4	0.322	NON_SYNONYMOUS_CODING Spn UTR_3_PRIME Spn
2L	10752994	2L_10752994_SNP [dm3] 2L_10752994_SNP [dm6]	A	T	1.134e^-4	0.322	INTRON CG17124	TF binding site mE1_TFBS_cad
3L	17579990	3L_17579990_MNP [dm3] 3L_17586890_MNP [dm6]	AAA	TGC	1.137e^-4	0.322	INTRON Eip74EF
2L	21756039	2L_21756039_SNP [dm3] 2L_21756039_SNP [dm6]	C	A	1.139e^-4	0.322	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1622288	2L_1622288_SNP [dm3] 2L_1622288_SNP [dm6]	G	A	1.143e^-4	0.323	EXON CR44603
2R	19395283	2R_19395283_SNP [dm3] 2R_23507760_SNP [dm6]	G	C	1.145e^-4	0.323	EXON CR43794
2L	9554314	2L_9554314_SNP [dm3] 2L_9554314_SNP [dm6]	G	C	1.149e^-4	0.323	INTRON jp	TF binding site mE1_TFBS_cad
2R	17941389	2R_17941389_SNP [dm3] 2R_22053884_SNP [dm6]	A	T	1.152e^-4	0.323	INTERGENIC
2L	1619377	2L_1619377_DEL [dm3] 2L_1619377_DEL [dm6]	GCT	G	1.152e^-4	0.323	DOWNSTREAM CR44603 EXON CR44603
2L	20096976	2L_20096976_SNP [dm3] 2L_20096976_SNP [dm6]	T	C	1.154e^-4	0.323	SYNONYMOUS_CODING mRpS18B UPSTREAM Kua DOWNSTREAM nesd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25189425	3R_25189425_SNP [dm3] 3R_29363703_SNP [dm6]	C	G	1.155e^-4	0.323	INTERGENIC
2L	4654207	2L_4654207_SNP [dm3] 2L_4654207_SNP [dm6]	T	C	1.159e^-4	0.323	INTERGENIC
2R	13811239	2R_13811239_SNP [dm3] 2R_17923734_SNP [dm6]	A	C	1.159e^-4	0.323	SYNONYMOUS_CODING Elk
4	1037831	4_1037831_SNP [dm3] 4_1017205_SNP [dm6]	G	A	1.163e^-4	0.323	SYNONYMOUS_CODING PlexA	TF binding site mE1_TFBS_sens
3R	19612069	3R_19612069_SNP [dm3] 3R_23786347_SNP [dm6]	A	G	1.163e^-4	0.323	INTRON mbc
3L	2790396	3L_2790396_SNP [dm3] 3L_2790396_SNP [dm6]	C	A	1.164e^-4	0.323	NON_SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21447726	X_21447726_SNP [dm3] X_21576699_SNP [dm6]	T	A	1.168e^-4	0.323	INTERGENIC
2R	14098751	2R_14098751_INS [dm3] 2R_18211246_INS [dm6]	G	GG	1.168e^-4	0.323	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10792850	2L_10792850_SNP [dm3] 2L_10792850_SNP [dm6]	C	T	1.170e^-4	0.323	INTRON CG31869
4	1063194	4_1063194_SNP [dm3] 4_1042568_SNP [dm6]	T	C	1.172e^-4	0.323	INTRON CaMKII	transposable element FlyBase
4	1048656	4_1048656_SNP [dm3] 4_1028030_SNP [dm6]	A	T	1.173e^-4	0.323	UPSTREAM PlexA & 1 other DOWNSTREAM CG11077 INTRON CR44031	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15243577	2L_15243577_SNP [dm3] 2L_15243577_SNP [dm6]	C	G	1.173e^-4	0.323	INTRON ZnT35C
2L	3768435	2L_3768435_SNP [dm3] 2L_3768435_SNP [dm6]	C	A	1.174e^-4	0.323	UTR_3_PRIME CG43707 DOWNSTREAM mir-1004
2L	19376230	2L_19376230_SNP [dm3] 2L_19376230_SNP [dm6]	T	G	1.177e^-4	0.323	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1310490	3L_1310490_DEL [dm3] 3L_1310490_DEL [dm6]	CATC	C	1.182e^-4	0.324	INTRON CG2469	TF binding site mE1_TFBS_cad
X	10182996	X_10182996_MNP [dm3] X_10288963_MNP [dm6]	CCACA	GGTGT	1.185e^-4	0.324	INTRON alpha-Man-I
2R	16719124	2R_16719124_DEL [dm3] 2R_20831619_DEL [dm6]	CCCTC	C	1.187e^-4	0.324	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1307602	3L_1307602_INS [dm3] 3L_1307602_INS [dm6]	T	TG	1.187e^-4	0.324	UTR_5_PRIME CG2469 UPSTREAM CG2277 INTRON CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	5850241	X_5850241_INS [dm3] X_5956208_INS [dm6]	G	GT	1.193e^-4	0.324	INTRON CG6067
2L	6343432	2L_6343432_SNP [dm3] 2L_6343432_SNP [dm6]	C	T	1.194e^-4	0.324	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6896980	2R_6896980_SNP [dm3] 2R_11009475_SNP [dm6]	A	G	1.196e^-4	0.324	INTRON luna	TF binding site mE1_TFBS_inv
2L	19724236	2L_19724236_SNP [dm3] 2L_19724236_SNP [dm6]	C	A	1.196e^-4	0.324	INTRON Lar
2R	17946748	2R_17946748_SNP [dm3] 2R_22059243_SNP [dm6]	A	C	1.198e^-4	0.324	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	3130177	2R_3130177_DEL [dm3] 2R_7242672_DEL [dm6]	AC	A	1.198e^-4	0.324	DOWNSTREAM Ady43A INTERGENIC
2L	9930439	2L_9930439_SNP [dm3] 2L_9930439_SNP [dm6]	G	T	1.199e^-4	0.324	UPSTREAM CG42367 DOWNSTREAM CG42366 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20173695	2R_20173695_SNP [dm3] 2R_24286172_SNP [dm6]	C	G	1.203e^-4	0.325	INTRON nvy	TF binding site mE1_TFBS_chinmo
2L	21782772	2L_21782772_SNP [dm3] 2L_21782772_SNP [dm6]	C	T	1.205e^-4	0.325	SYNONYMOUS_CODING CG11630 INTRON CG31612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	5536435	2R_5536435_SNP [dm3] 2R_9648930_SNP [dm6]	C	T	1.208e^-4	0.325	INTRON Mmp2
3L	10503135	3L_10503135_SNP [dm3] 3L_10510035_SNP [dm6]	T	C	1.211e^-4	0.325	INTRON A2bp1
3L	10132021	3L_10132021_SNP [dm3] 3L_10138921_SNP [dm6]	T	C	1.215e^-4	0.326	UTR_3_PRIME dpr6
3L	10503136	3L_10503136_SNP [dm3] 3L_10510036_SNP [dm6]	C	A	1.222e^-4	0.327	INTRON A2bp1
2L	3712990	2L_3712990_SNP [dm3] 2L_3712990_SNP [dm6]	A	C	1.222e^-4	0.327	START_GAINED CG31955 UTR_5_PRIME CG31955 UPSTREAM CG2818 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6910100	2L_6910100_SNP [dm3] 2L_6910100_SNP [dm6]	T	C	1.226e^-4	0.327	SYNONYMOUS_CODING Rat1 DOWNSTREAM Wee1	TF binding site mE1_TFBS_sens
2L	4132503	2L_4132503_SNP [dm3] 2L_4132503_SNP [dm6]	G	T	1.227e^-4	0.327	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9351231	3L_9351231_SNP [dm3] 3L_9358131_SNP [dm6]	C	A	1.228e^-4	0.327	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20089060	2L_20089060_SNP [dm3] 2L_20089060_SNP [dm6]	G	A	1.229e^-4	0.327	NON_SYNONYMOUS_CODING neb DOWNSTREAM CG10747	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12235675	2L_12235675_SNP [dm3] 2L_12235675_SNP [dm6]	C	A	1.234e^-4	0.327	INTRON aret
2R	5534685	2R_5534685_SNP [dm3] 2R_9647180_SNP [dm6]	A	C	1.235e^-4	0.327	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
2R	20509938	2R_20509938_SNP [dm3] 2R_24622415_SNP [dm6]	G	T	1.237e^-4	0.327	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6003676	X_6003676_SNP [dm3] X_6109643_SNP [dm6]	A	G	1.238e^-4	0.327	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	18065437	X_18065437_SNP [dm3] X_18171404_SNP [dm6]	C	T	1.241e^-4	0.328	UTR_3_PRIME Frq1
2L	5414321	2L_5414321_SNP [dm3] 2L_5414321_SNP [dm6]	T	G	1.244e^-4	0.328	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	13589744	2R_13589744_SNP [dm3] 2R_17702239_SNP [dm6]	T	C	1.245e^-4	0.328	UPSTREAM snoRNA:U31:54Ed & 3 others DOWNSTREAM snoRNA:U27:54Ea & 4 others INTRON Uhg1	TF binding site mE1_TFBS_sbb
3R	18837151	3R_18837151_DEL [dm3] 3R_23011429_DEL [dm6]	GGCCATTTGACACTGCCAAC...	G	1.247e^-4	0.328	UPSTREAM CG34375 & 1 other DOWNSTREAM CR44225 INTERGENIC
2L	9269645	2L_9269645_SNP [dm3] 2L_9269645_SNP [dm6]	C	A	1.252e^-4	0.329	INTRON Ggamma30A
2L	9753532	2L_9753532_SNP [dm3] 2L_9753532_SNP [dm6]	A	T	1.254e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5405502	2L_5405502_SNP [dm3] 2L_5405502_SNP [dm6]	C	T	1.256e^-4	0.329	INTRON H15
3L	5246424	3L_5246424_SNP [dm3] 3L_5253324_SNP [dm6]	T	C	1.258e^-4	0.329	INTRON shep
3R	16943169	3R_16943169_SNP [dm3] 3R_21117447_SNP [dm6]	A	G	1.259e^-4	0.329	SYNONYMOUS_CODING ppan DOWNSTREAM Bdbt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9442417	2R_9442417_SNP [dm3] 2R_13554912_SNP [dm6]	T	C	1.265e^-4	0.329	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	18105944	3L_18105944_SNP [dm3] 3L_18112844_SNP [dm6]	A	T	1.266e^-4	0.329	UTR_3_PRIME mus304 UPSTREAM CG7341 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	9011470	2L_9011470_SNP [dm3] 2L_9011470_SNP [dm6]	T	C	1.266e^-4	0.329	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3R	9886639	3R_9886639_DEL [dm3] 3R_14060917_DEL [dm6]	AA	T	1.270e^-4	0.329	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	20078922	2L_20078922_SNP [dm3] 2L_20078922_SNP [dm6]	A	G	1.272e^-4	0.329	DOWNSTREAM fok INTRON neb	TF binding site mE1_TFBS_cad
2R	3927733	2R_3927733_SNP [dm3] 2R_8040228_SNP [dm6]	T	C	1.274e^-4	0.329	UPSTREAM Optix INTRON Optix	TF binding site mE1_TFBS_chinmo
3R	13653419	3R_13653419_SNP [dm3] 3R_17827697_SNP [dm6]	A	G	1.274e^-4	0.329	INTRON tinc	TF binding site mE1_TFBS_cad
3L	1962360	3L_1962360_DEL [dm3] 3L_1962360_DEL [dm6]	CATGAGAA	C	1.276e^-4	0.329	UPSTREAM SCOT INTRON mv
3L	8795612	3L_8795612_SNP [dm3] 3L_8802512_SNP [dm6]	T	G	1.277e^-4	0.329	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311
2R	20509937	2R_20509937_SNP [dm3] 2R_24622414_SNP [dm6]	T	C	1.278e^-4	0.329	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18820066	3R_18820066_DEL [dm3] 3R_22994344_DEL [dm6]	AAAAA	G	1.281e^-4	0.329	UPSTREAM Nha2 INTRON Nha2
3R	26405893	3R_26405893_DEL [dm3] 3R_30580171_DEL [dm6]	TT	T	1.288e^-4	0.329	INTRON CG9702	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6052531	2R_6052531_SNP [dm3] 2R_10165026_SNP [dm6]	G	C	1.292e^-4	0.329	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17389559	X_17389559_SNP [dm3] X_17495526_SNP [dm6]	T	G	1.294e^-4	0.329	INTRON CG43658
2L	12869922	2L_12869922_SNP [dm3] 2L_12869922_SNP [dm6]	A	T	1.299e^-4	0.329	INTERGENIC
2R	14047967	2R_14047967_SNP [dm3] 2R_18160462_SNP [dm6]	T	A	1.301e^-4	0.329	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	27431292	3R_27431292_SNP [dm3] 3R_31605570_SNP [dm6]	G	T	1.306e^-4	0.329	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	19921595	3R_19921595_SNP [dm3] 3R_24095873_SNP [dm6]	G	A	1.306e^-4	0.329	INTRON 4EHP
3R	19612169	3R_19612169_INS [dm3] 3R_23786447_INS [dm6]	C	CTCTACTACTGCTCG...	1.308e^-4	0.329	INTRON mbc
2L	9588207	2L_9588207_SNP [dm3] 2L_9588207_SNP [dm6]	G	A	1.313e^-4	0.329	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10305370	3L_10305370_SNP [dm3] 3L_10312270_SNP [dm6]	T	A	1.313e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16942585	3R_16942585_SNP [dm3] 3R_21116863_SNP [dm6]	T	C	1.314e^-4	0.329	SYNONYMOUS_CODING ppan DOWNSTREAM Rab11 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3604178	2L_3604178_SNP [dm3] 2L_3604178_SNP [dm6]	G	A	1.318e^-4	0.329	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	4045930	3L_4045930_SNP [dm3] 3L_4045930_SNP [dm6]	G	A	1.323e^-4	0.329	UPSTREAM CG1136 INTERGENIC
4	960707	4_960707_SNP [dm3] 4_940081_SNP [dm6]	A	T	1.323e^-4	0.329	INTRON mGluR
2R	3928297	2R_3928297_SNP [dm3] 2R_8040792_SNP [dm6]	C	T	1.324e^-4	0.329	UPSTREAM Optix INTRON Optix
2L	10356459	2L_10356459_SNP [dm3] 2L_10356459_SNP [dm6]	A	G	1.324e^-4	0.329	UTR_5_PRIME CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2290808	2L_2290808_SNP [dm3] 2L_2290808_SNP [dm6]	T	A	1.325e^-4	0.329	UPSTREAM robl22E INTERGENIC
3R	25659763	3R_25659763_SNP [dm3] 3R_29834041_SNP [dm6]	A	C	1.329e^-4	0.329	SYNONYMOUS_CODING Atg16 UPSTREAM Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13552337	2R_13552337_SNP [dm3] 2R_17664832_SNP [dm6]	G	T	1.334e^-4	0.329	UTR_5_PRIME CCHa1-R UPSTREAM eIF3-S8
2R	11391501	2R_11391501_SNP [dm3] 2R_15503996_SNP [dm6]	A	G	1.335e^-4	0.329	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
2L	1010550	2L_1010550_DEL [dm3] 2L_1010550_DEL [dm6]	TT	T	1.335e^-4	0.329	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
3R	14866595	3R_14866595_SNP [dm3] 3R_19040873_SNP [dm6]	G	T	1.335e^-4	0.329	NON_SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad
2L	9360837	2L_9360837_SNP [dm3] 2L_9360837_SNP [dm6]	A	T	1.339e^-4	0.329	INTERGENIC
2R	19082945	2R_19082945_SNP [dm3] 2R_23195422_SNP [dm6]	C	G	1.339e^-4	0.329	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9086768	2L_9086768_SNP [dm3] 2L_9086768_SNP [dm6]	G	A	1.346e^-4	0.329	NON_SYNONYMOUS_CODING Toll-4
2R	10979634	2R_10979634_SNP [dm3] 2R_15092129_SNP [dm6]	G	T	1.347e^-4	0.329	SPLICE_SITE_DONOR CR44457 INTRON CR44457 EXON CR44457
2L	21944386	2L_21944386_DEL [dm3] 2L_21944386_DEL [dm6]	AACACCAAGAGC...	A	1.348e^-4	0.329	INTERGENIC
2L	15002055	2L_15002055_SNP [dm3] 2L_15002055_SNP [dm6]	G	T	1.348e^-4	0.329	INTERGENIC
3R	13660919	3R_13660919_SNP [dm3] 3R_17835197_SNP [dm6]	G	T	1.350e^-4	0.329	INTRON tinc
2R	10810253	2R_10810253_INS [dm3] 2R_14922748_INS [dm6]	A	AAAACGAACA	1.353e^-4	0.329	INTRON CG10249
2L	21734483	2L_21734483_SNP [dm3] 2L_21734483_SNP [dm6]	G	C	1.356e^-4	0.329	INTERGENIC	transposable element FlyBase
3L	8687333	3L_8687333_SNP [dm3] 3L_8694233_SNP [dm6]	T	C	1.358e^-4	0.329	INTERGENIC
3R	16942187	3R_16942187_SNP [dm3] 3R_21116465_SNP [dm6]	G	A	1.358e^-4	0.329	SYNONYMOUS_CODING ppan DOWNSTREAM Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4155226	2L_4155226_SNP [dm3] 2L_4155226_SNP [dm6]	T	C	1.363e^-4	0.329	INTERGENIC
2L	21795385	2L_21795385_SNP [dm3] 2L_21795385_SNP [dm6]	A	C	1.364e^-4	0.329	UTR_5_PRIME CG31612 INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	8792123	3L_8792123_SNP [dm3] 3L_8799023_SNP [dm6]	T	A	1.366e^-4	0.329	DOWNSTREAM Fhos INTRON CG13310
X	12166500	X_12166500_DEL [dm3] X_12272467_DEL [dm6]	TGAGCTCGGT	T	1.369e^-4	0.329	INTRON Ten-a
2R	2806025	2R_2806025_SNP [dm3] 2R_6918520_SNP [dm6]	T	C	1.371e^-4	0.329	INTRON CG30158	TF binding site mE1_TFBS_chinmo
2L	4009710	2L_4009710_SNP [dm3] 2L_4009710_SNP [dm6]	C	G	1.371e^-4	0.329	DOWNSTREAM CG43774 INTERGENIC
3L	13778703	3L_13778703_SNP [dm3] 3L_13785603_SNP [dm6]	A	G	1.373e^-4	0.329	INTRON bru-3
2R	19615970	2R_19615970_SNP [dm3] 2R_23728447_SNP [dm6]	T	A	1.373e^-4	0.329	INTRON Sesn
2R	2876797	2R_2876797_SNP [dm3] 2R_6989292_SNP [dm6]	C	T	1.376e^-4	0.329	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
2L	5822531	2L_5822531_INS [dm3] 2L_5822531_INS [dm6]	G	GG	1.378e^-4	0.329	INTERGENIC
3R	20190123	3R_20190123_SNP [dm3] 3R_24364401_SNP [dm6]	C	G	1.378e^-4	0.329	SPLICE_SITE_REGION CG17784 DOWNSTREAM CG33340 INTRON CG17784	TF binding site mE1_TFBS_cad
3R	13652450	3R_13652450_INS [dm3] 3R_17826728_INS [dm6]	TC	ATGTATATACCT...	1.379e^-4	0.329	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	21855687	2L_21855687_SNP [dm3] 2L_21855687_SNP [dm6]	G	T	1.380e^-4	0.329	INTRON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22811640	3R_22811640_SNP [dm3] 3R_26985918_SNP [dm6]	G	C	1.381e^-4	0.329	SYNONYMOUS_CODING CG31075 DOWNSTREAM CG14253	TF binding site mE1_TFBS_cad
2L	21779927	2L_21779927_INS [dm3] 2L_21779927_INS [dm6]	C	ATATCGATATTAATTGCGGA...	1.381e^-4	0.329	INTRON CG31612	transposable element FlyBase
3R	20930525	3R_20930525_DEL [dm3] 3R_25104803_DEL [dm6]	ATA	A	1.383e^-4	0.329	INTRON CG34027
4	1033359	4_1033359_SNP [dm3] 4_1012733_SNP [dm6]	C	T	1.384e^-4	0.329	UTR_3_PRIME PlexA DOWNSTREAM PlexA
2R	3812897	2R_3812897_SNP [dm3] 2R_7925392_SNP [dm6]	G	T	1.388e^-4	0.329	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12781452	2L_12781452_SNP [dm3] 2L_12781452_SNP [dm6]	A	G	1.394e^-4	0.329	INTERGENIC
3L	8877544	3L_8877544_SNP [dm3] 3L_8884444_SNP [dm6]	T	C	1.395e^-4	0.329	INTRON dally
X	11953655	X_11953655_SNP [dm3] X_12059622_SNP [dm6]	G	A	1.397e^-4	0.329	UPSTREAM Muc11A INTRON CR43960 & 1 other
2L	3635643	2L_3635643_SNP [dm3] 2L_3635643_SNP [dm6]	G	T	1.402e^-4	0.329	INTRON for
2L	20425158	2L_20425158_SNP [dm3] 2L_20425158_SNP [dm6]	A	T	1.405e^-4	0.329	UPSTREAM CG15130 INTERGENIC
2L	21863961	2L_21863961_DEL [dm3] 2L_21863961_DEL [dm6]	AA	A	1.405e^-4	0.329	DOWNSTREAM CR44918 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15197071	2R_15197071_SNP [dm3] 2R_19309566_SNP [dm6]	C	A	1.411e^-4	0.329	SYNONYMOUS_CODING EndoB
2L	3032922	2L_3032922_SNP [dm3] 2L_3032922_SNP [dm6]	A	C	1.416e^-4	0.329	SYNONYMOUS_CODING CG17258 DOWNSTREAM GABPI	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	1122199	X_1122199_SNP [dm3] X_1228166_SNP [dm6]	A	C	1.416e^-4	0.329	INTRON CG3638
2L	17079303	2L_17079303_SNP [dm3] 2L_17079303_SNP [dm6]	G	A	1.417e^-4	0.329	INTERGENIC
3L	8878949	3L_8878949_DEL [dm3] 3L_8885849_DEL [dm6]	AGCCTTATTAAAG...	A	1.422e^-4	0.329	INTRON dally
X	3030095	X_3030095_SNP [dm3] X_3136062_SNP [dm6]	G	T	1.427e^-4	0.329	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14285872	2R_14285872_INS [dm3] 2R_18398367_INS [dm6]	A	ACTA	1.431e^-4	0.329	UPSTREAM GstE1 & 1 other INTRON GstE10
2R	16508996	2R_16508996_SNP [dm3] 2R_20621491_SNP [dm6]	C	T	1.435e^-4	0.329	NON_SYNONYMOUS_CODING CG11180 DOWNSTREAM CG9945
2L	19783010	2L_19783010_SNP [dm3] 2L_19783010_SNP [dm6]	A	G	1.436e^-4	0.329	INTRON CdGAPr	TF binding site mE1_TFBS_inv
X	8183193	X_8183193_SNP [dm3] X_8289160_SNP [dm6]	G	C	1.440e^-4	0.329	INTRON nAChRalpha3
X	5846134	X_5846134_SNP [dm3] X_5952101_SNP [dm6]	T	A	1.445e^-4	0.329	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
3R	21439184	3R_21439184_INS [dm3] 3R_25613462_INS [dm6]	T	TGGAG	1.447e^-4	0.329	UPSTREAM CG5079 INTRON Npl4
4	1076265	4_1076265_SNP [dm3] 4_1055639_SNP [dm6]	C	T	1.450e^-4	0.329	INTERGENIC
2R	12442548	2R_12442548_SNP [dm3] 2R_16555043_SNP [dm6]	C	T	1.455e^-4	0.329	SYNONYMOUS_CODING Syn2
3L	12245949	3L_12245949_SNP [dm3] 3L_12252849_SNP [dm6]	A	C	1.458e^-4	0.329	INTRON app
X	674086	X_674086_SNP [dm3] X_780053_SNP [dm6]	T	A	1.465e^-4	0.329	INTRON fz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21770308	3L_21770308_SNP [dm3] 3L_21777208_SNP [dm6]	G	A	1.466e^-4	0.329	DOWNSTREAM CG42689 INTRON CG42552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21050769	2L_21050769_SNP [dm3] 2L_21050769_SNP [dm6]	A	G	1.467e^-4	0.329	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	22197609	2L_22197609_SNP [dm3] 2L_22197609_SNP [dm6]	A	G	1.469e^-4	0.329	INTRON Ir40a
3L	12638464	3L_12638464_SNP [dm3] 3L_12645364_SNP [dm6]	T	A	1.469e^-4	0.329	SPLICE_SITE_REGION CR32111 EXON CR32111
2R	12315727	2R_12315727_SNP [dm3] 2R_16428222_SNP [dm6]	G	C	1.471e^-4	0.329	INTRON Sema-2b
2R	10628877	2R_10628877_DEL [dm3] 2R_14741372_DEL [dm6]	TA	G	1.475e^-4	0.329	INTRON CG12858	TF binding site mE1_TFBS_cad
X	3186468	X_3186468_SNP [dm3] X_3292435_SNP [dm6]	A	C	1.476e^-4	0.329	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20103752	2L_20103752_SNP [dm3] 2L_20103752_SNP [dm6]	G	A	1.476e^-4	0.329	SYNONYMOUS_CODING CG13970 DOWNSTREAM Kua
2L	20085746	2L_20085746_SNP [dm3] 2L_20085746_SNP [dm6]	C	T	1.480e^-4	0.329	UPSTREAM fok INTRON neb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21768067	2L_21768067_SNP [dm3] 2L_21768067_SNP [dm6]	G	T	1.481e^-4	0.329	INTRON CG31612	TF binding site mE1_TFBS_inv
3L	12641995	3L_12641995_SNP [dm3] 3L_12648895_SNP [dm6]	C	G	1.481e^-4	0.329	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	21748027	2L_21748027_SNP [dm3] 2L_21748027_SNP [dm6]	C	T	1.483e^-4	0.329	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6003677	X_6003677_SNP [dm3] X_6109644_SNP [dm6]	A	G	1.485e^-4	0.329	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1136026	2R_1136026_SNP [dm3] 2R_5248521_SNP [dm6]	T	C	1.487e^-4	0.329	INTRON Nipped-A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3796513	2R_3796513_SNP [dm3] 2R_7909008_SNP [dm6]	G	T	1.489e^-4	0.329	INTRON CG30377	TF binding site mE1_TFBS_cad
2R	2882254	2R_2882254_SNP [dm3] 2R_6994749_SNP [dm6]	T	C	1.489e^-4	0.329	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
3L	9526511	3L_9526511_SNP [dm3] 3L_9533411_SNP [dm6]	A	T	1.492e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4965558	2R_4965558_SNP [dm3] 2R_9078053_SNP [dm6]	T	C	1.493e^-4	0.329	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2R	10619187	2R_10619187_SNP [dm3] 2R_14731682_SNP [dm6]	C	G	1.494e^-4	0.329	INTERGENIC
X	16613276	X_16613276_SNP [dm3] X_16719243_SNP [dm6]	A	G	1.494e^-4	0.329	INTRON CG34325
2R	1302422	2R_1302422_SNP [dm3] 2R_5414917_SNP [dm6]	T	A	1.497e^-4	0.329	INTRON laccase2
2R	13071616	2R_13071616_SNP [dm3] 2R_17184111_SNP [dm6]	G	T	1.497e^-4	0.329	UPSTREAM CR44387 INTERGENIC
2L	3546346	2L_3546346_SNP [dm3] 2L_3546346_SNP [dm6]	A	G	1.499e^-4	0.329	INTRON drm	TF binding site BDTNP1_TFBS_dl
2L	11507046	2L_11507046_SNP [dm3] 2L_11507046_SNP [dm6]	A	G	1.501e^-4	0.329	SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10182982	X_10182982_DEL [dm3] X_10288949_DEL [dm6]	AACACCACCACCA...	G	1.503e^-4	0.329	INTRON alpha-Man-I
2R	10619161	2R_10619161_SNP [dm3] 2R_14731656_SNP [dm6]	T	G	1.503e^-4	0.329	INTERGENIC
X	5680455	X_5680455_SNP [dm3] X_5786422_SNP [dm6]	C	T	1.504e^-4	0.329	INTRON CG42699
2L	14194182	2L_14194182_SNP [dm3] 2L_14194182_SNP [dm6]	C	G	1.506e^-4	0.329	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15992713	2L_15992713_SNP [dm3] 2L_15992713_SNP [dm6]	C	G	1.511e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15197149	2R_15197149_SNP [dm3] 2R_19309644_SNP [dm6]	T	C	1.518e^-4	0.329	INTRON EndoB
2R	5534972	2R_5534972_SNP [dm3] 2R_9647467_SNP [dm6]	G	C	1.526e^-4	0.329	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
3R	21852411	3R_21852411_SNP [dm3] 3R_26026689_SNP [dm6]	G	T	1.531e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	1619105	2L_1619105_SNP [dm3] 2L_1619105_SNP [dm6]	G	A	1.532e^-4	0.329	DOWNSTREAM CR44603 EXON CR44603
2L	21109868	2L_21109868_SNP [dm3] 2L_21109868_SNP [dm6]	C	T	1.533e^-4	0.329	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7871972	2L_7871972_DEL [dm3] 2L_7871972_DEL [dm6]	TT	T	1.534e^-4	0.329	UPSTREAM Proc & 1 other DOWNSTREAM CR45364 INTERGENIC
2L	21827298	2L_21827298_SNP [dm3] 2L_21827298_SNP [dm6]	G	A	1.536e^-4	0.329	INTERGENIC	transposable element FlyBase
2R	17742311	2R_17742311_SNP [dm3] 2R_21854806_SNP [dm6]	C	T	1.537e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6272468	2R_6272468_SNP [dm3] 2R_10384963_SNP [dm6]	G	A	1.537e^-4	0.329	INTRON CG42732
2L	21888526	2L_21888526_SNP [dm3] 2L_21888526_SNP [dm6]	A	G	1.542e^-4	0.329	INTERGENIC
X	2646354	X_2646354_SNP [dm3] X_2752321_SNP [dm6]	G	A	1.543e^-4	0.329	UPSTREAM CR43494 INTRON kirre
2R	4577936	2R_4577936_SNP [dm3] 2R_8690431_SNP [dm6]	G	T	1.545e^-4	0.329	INTERGENIC
2R	10628915	2R_10628915_SNP [dm3] 2R_14741410_SNP [dm6]	A	T	1.546e^-4	0.329	INTRON CG12858	TF binding site mE1_TFBS_cad
3R	15448710	3R_15448710_SNP [dm3] 3R_19622988_SNP [dm6]	G	A	1.546e^-4	0.329	INTRON CG6231
3R	12231117	3R_12231117_SNP [dm3] 3R_16405395_SNP [dm6]	A	C	1.547e^-4	0.329	INTERGENIC
2R	1746835	2R_1746835_SNP [dm3] 2R_5859330_SNP [dm6]	G	A	1.550e^-4	0.329	UTR_3_PRIME dpr12
2R	13520331	2R_13520331_SNP [dm3] 2R_17632826_SNP [dm6]	G	A	1.553e^-4	0.329	SYNONYMOUS_CODING rhi DOWNSTREAM Oxp INTRON CG10936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13534071	3L_13534071_SNP [dm3] 3L_13540971_SNP [dm6]	G	A	1.553e^-4	0.329	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	1035750	X_1035750_INS [dm3] X_1141717_INS [dm6]	A	ATA	1.555e^-4	0.329	INTERGENIC
X	1035752	X_1035752_INS [dm3] X_1141719_INS [dm6]	T	TG	1.555e^-4	0.329	INTERGENIC
2L	16605015	2L_16605015_SNP [dm3] 2L_16605015_SNP [dm6]	T	C	1.557e^-4	0.329	UPSTREAM CG31815 INTRON CG42389
X	2318786	X_2318786_SNP [dm3] X_2424753_SNP [dm6]	G	A	1.559e^-4	0.329	DOWNSTREAM CG32797 INTERGENIC
2L	1263161	2L_1263161_SNP [dm3] 2L_1263161_SNP [dm6]	T	C	1.563e^-4	0.329	INTRON robo3
2R	9442453	2R_9442453_SNP [dm3] 2R_13554948_SNP [dm6]	T	A	1.567e^-4	0.329	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	21861405	2L_21861405_SNP [dm3] 2L_21861405_SNP [dm6]	G	T	1.569e^-4	0.329	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	21939393	2L_21939393_SNP [dm3] 2L_21939393_SNP [dm6]	G	C	1.570e^-4	0.329	INTERGENIC
2L	21847054	2L_21847054_SNP [dm3] 2L_21847054_SNP [dm6]	G	A	1.574e^-4	0.329	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19724239	2L_19724239_SNP [dm3] 2L_19724239_SNP [dm6]	T	A	1.575e^-4	0.329	INTRON Lar
2L	19724240	2L_19724240_SNP [dm3] 2L_19724240_SNP [dm6]	C	T	1.575e^-4	0.329	INTRON Lar
2L	12042475	2L_12042475_SNP [dm3] 2L_12042475_SNP [dm6]	A	C	1.578e^-4	0.329	NON_SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo
2L	21796634	2L_21796634_SNP [dm3] 2L_21796634_SNP [dm6]	C	A	1.580e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	7957144	2R_7957144_SNP [dm3] 2R_12069639_SNP [dm6]	C	T	1.582e^-4	0.329	INTRON CG8888	TF binding site BDTNP1_TFBS_sna
3R	26128068	3R_26128068_INS [dm3] 3R_30302346_INS [dm6]	A	ATAAAATATCAACTGTATAG...	1.582e^-4	0.329	INTRON hdc
2L	7513737	2L_7513737_SNP [dm3] 2L_7513737_SNP [dm6]	C	T	1.584e^-4	0.329	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15001132	2L_15001132_SNP [dm3] 2L_15001132_SNP [dm6]	C	T	1.587e^-4	0.329	INTERGENIC
3L	11368272	3L_11368272_SNP [dm3] 3L_11375172_SNP [dm6]	A	G	1.588e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6450674	2R_6450674_SNP [dm3] 2R_10563169_SNP [dm6]	T	A	1.588e^-4	0.329	INTRON psq	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19461862	2R_19461862_SNP [dm3] 2R_23574339_SNP [dm6]	T	A	1.589e^-4	0.329	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3712625	2L_3712625_SNP [dm3] 2L_3712625_SNP [dm6]	C	A	1.590e^-4	0.329	NON_SYNONYMOUS_CODING CG31955 UPSTREAM cutlet & 1 other INTRON CG31955	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
X	2220271	X_2220271_SNP [dm3] X_2326238_SNP [dm6]	C	T	1.593e^-4	0.329	UPSTREAM CG14050 & 1 other INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15383423	2R_15383423_SNP [dm3] 2R_19495918_SNP [dm6]	C	T	1.594e^-4	0.329	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14152586	2R_14152586_SNP [dm3] 2R_18265081_SNP [dm6]	G	A	1.594e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6375487	3R_6375487_SNP [dm3] 3R_10549765_SNP [dm6]	T	A	1.595e^-4	0.329	INTRON hth
2L	12869921	2L_12869921_SNP [dm3] 2L_12869921_SNP [dm6]	T	C	1.597e^-4	0.329	INTERGENIC
2L	9945731	2L_9945731_DEL [dm3] 2L_9945731_DEL [dm6]	ATCAA	A	1.605e^-4	0.329	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4186605	2R_4186605_SNP [dm3] 2R_8299100_SNP [dm6]	G	A	1.606e^-4	0.329	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9945713	2L_9945713_SNP [dm3] 2L_9945713_SNP [dm6]	C	T	1.610e^-4	0.329	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9945879	2L_9945879_SNP [dm3] 2L_9945879_SNP [dm6]	A	T	1.610e^-4	0.329	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9946027	2L_9946027_SNP [dm3] 2L_9946027_SNP [dm6]	C	G	1.610e^-4	0.329	INTRON CG5853	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14972791	2L_14972791_SNP [dm3] 2L_14972791_SNP [dm6]	C	T	1.610e^-4	0.329	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
X	32986	X_32986_SNP [dm3] X_136599_SNP [dm6]	C	G	1.612e^-4	0.329	INTRON RhoGAP1A
4	1076435	4_1076435_SNP [dm3] 4_1055809_SNP [dm6]	T	C	1.617e^-4	0.329	INTERGENIC
X	1315496	X_1315496_SNP [dm3] X_1421463_SNP [dm6]	T	C	1.620e^-4	0.329	INTRON futsch	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	1557965	X_1557965_SNP [dm3] X_1663932_SNP [dm6]	T	A	1.623e^-4	0.329	UTR_3_PRIME br INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16128208	2L_16128208_SNP [dm3] 2L_16128208_SNP [dm6]	T	C	1.624e^-4	0.329	INTERGENIC
3L	12245981	3L_12245981_SNP [dm3] 3L_12252881_SNP [dm6]	T	A	1.625e^-4	0.329	INTRON app
2L	21858454	2L_21858454_SNP [dm3] 2L_21858454_SNP [dm6]	T	C	1.625e^-4	0.329	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9753574	2L_9753574_SNP [dm3] 2L_9753574_SNP [dm6]	A	G	1.626e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_inv
2L	22063176	2L_22063176_INS [dm3] 2L_22063176_INS [dm6]	T	TA	1.626e^-4	0.329	INTERGENIC
3R	15448757	3R_15448757_SNP [dm3] 3R_19623035_SNP [dm6]	C	T	1.629e^-4	0.329	INTRON CG6231
2R	4615386	2R_4615386_SNP [dm3] 2R_8727881_SNP [dm6]	T	G	1.632e^-4	0.329	NON_SYNONYMOUS_CODING gcl
2L	6335389	2L_6335389_SNP [dm3] 2L_6335389_SNP [dm6]	A	C	1.635e^-4	0.329	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14814957	2R_14814957_SNP [dm3] 2R_18927452_SNP [dm6]	G	C	1.637e^-4	0.329	INTRON sano
3L	1430599	3L_1430599_SNP [dm3] 3L_1430599_SNP [dm6]	G	A	1.640e^-4	0.329	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19762308	2L_19762308_SNP [dm3] 2L_19762308_SNP [dm6]	G	A	1.643e^-4	0.329	INTRON fbp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
4	1076538	4_1076538_SNP [dm3] 4_1055912_SNP [dm6]	C	T	1.645e^-4	0.329	INTERGENIC
2L	20720293	2L_20720293_SNP [dm3] 2L_20720293_SNP [dm6]	C	A	1.648e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11635751	2L_11635751_SNP [dm3] 2L_11635751_SNP [dm6]	A	C	1.650e^-4	0.329	INTERGENIC
2L	4005846	2L_4005846_SNP [dm3] 2L_4005846_SNP [dm6]	C	T	1.651e^-4	0.329	UPSTREAM CG15423 DOWNSTREAM CG15422 INTERGENIC
2R	14157474	2R_14157474_SNP [dm3] 2R_18269969_SNP [dm6]	T	G	1.652e^-4	0.329	INTERGENIC
X	20002394	X_20002394_SNP [dm3] X_20108361_SNP [dm6]	C	T	1.653e^-4	0.329	INTERGENIC
2L	14844445	2L_14844445_SNP [dm3] 2L_14844445_SNP [dm6]	G	A	1.653e^-4	0.329	DOWNSTREAM CG15279 INTERGENIC
3R	15448765	3R_15448765_DEL [dm3] 3R_19623043_DEL [dm6]	GCACGAGGATTTTATTTGTG...	G	1.654e^-4	0.329	INTRON CG6231	TF binding site BDTNP1_TFBS_dl
2R	17742017	2R_17742017_SNP [dm3] 2R_21854512_SNP [dm6]	C	T	1.657e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1119758	X_1119758_SNP [dm3] X_1225725_SNP [dm6]	T	A	1.659e^-4	0.329	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21727464	2L_21727464_SNP [dm3] 2L_21727464_SNP [dm6]	C	T	1.665e^-4	0.329	SYNONYMOUS_CODING CG31619 INTRON CG31619
2L	9046771	2L_9046771_SNP [dm3] 2L_9046771_SNP [dm6]	C	T	1.665e^-4	0.329	INTERGENIC
2L	16132775	2L_16132775_SNP [dm3] 2L_16132775_SNP [dm6]	A	T	1.666e^-4	0.329	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9442353	2R_9442353_SNP [dm3] 2R_13554848_SNP [dm6]	C	G	1.667e^-4	0.329	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	14847378	2L_14847378_SNP [dm3] 2L_14847378_SNP [dm6]	C	T	1.667e^-4	0.329	INTRON CG15279
2L	3015500	2L_3015500_SNP [dm3] 2L_3015500_SNP [dm6]	C	T	1.670e^-4	0.329	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8535175	X_8535175_DEL [dm3] X_8641142_DEL [dm6]	CGACCATGC	C	1.672e^-4	0.329	INTRON oc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13186335	2R_13186335_SNP [dm3] 2R_17298830_SNP [dm6]	T	A	1.673e^-4	0.329	INTRON mbl
3L	9425515	3L_9425515_SNP [dm3] 3L_9432415_SNP [dm6]	A	G	1.674e^-4	0.329	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14845400	2L_14845400_SNP [dm3] 2L_14845400_SNP [dm6]	G	A	1.676e^-4	0.329	INTRON CG15279
2L	2100385	2L_2100385_SNP [dm3] 2L_2100385_SNP [dm6]	G	A	1.677e^-4	0.329	INTRON dpr3
2R	3013141	2R_3013141_SNP [dm3] 2R_7125636_SNP [dm6]	C	T	1.677e^-4	0.329	SYNONYMOUS_CODING esn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20608213	3R_20608213_SNP [dm3] 3R_24782491_SNP [dm6]	T	G	1.678e^-4	0.329	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2L	20103715	2L_20103715_SNP [dm3] 2L_20103715_SNP [dm6]	G	A	1.679e^-4	0.329	NON_SYNONYMOUS_CODING CG13970 DOWNSTREAM Kua
X	1124451	X_1124451_SNP [dm3] X_1230418_SNP [dm6]	G	A	1.679e^-4	0.329	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3327166	2L_3327166_DEL [dm3] 2L_3327166_DEL [dm6]	ATGA	A	1.679e^-4	0.329	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2R	10619216	2R_10619216_SNP [dm3] 2R_14731711_SNP [dm6]	C	A	1.681e^-4	0.329	INTERGENIC
2L	3713195	2L_3713195_SNP [dm3] 2L_3713195_SNP [dm6]	A	T	1.682e^-4	0.329	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13654763	3R_13654763_SNP [dm3] 3R_17829041_SNP [dm6]	T	A	1.683e^-4	0.329	INTRON tinc	TF binding site mE1_TFBS_HSA
3R	19919356	3R_19919356_SNP [dm3] 3R_24093634_SNP [dm6]	A	G	1.684e^-4	0.329	INTRON 4EHP	TF binding site mE1_TFBS_HSA
2L	21798581	2L_21798581_DEL [dm3] 2L_21798581_DEL [dm6]	GTGTGTG	G	1.685e^-4	0.329	EXON CR44269
2L	3834290	2L_3834290_SNP [dm3] 2L_3834290_SNP [dm6]	G	A	1.687e^-4	0.329	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	3028896	X_3028896_SNP [dm3] X_3134863_SNP [dm6]	A	T	1.687e^-4	0.329	UPSTREAM N DOWNSTREAM kirre INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl
X	4622615	X_4622615_SNP [dm3] X_4728582_SNP [dm6]	T	C	1.688e^-4	0.329	UTR_3_PRIME Proc-R
2L	9588205	2L_9588205_SNP [dm3] 2L_9588205_SNP [dm6]	A	G	1.694e^-4	0.329	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1945387	3L_1945387_SNP [dm3] 3L_1945387_SNP [dm6]	T	A	1.697e^-4	0.329	SPLICE_SITE_REGION mu2 INTRON mu2
3L	8968285	3L_8968285_SNP [dm3] 3L_8975185_SNP [dm6]	C	T	1.698e^-4	0.329	NON_SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9333661	3L_9333661_SNP [dm3] 3L_9340561_SNP [dm6]	G	A	1.699e^-4	0.329	UTR_5_PRIME PGRP-LC INTRON PGRP-LC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9945895	2L_9945895_SNP [dm3] 2L_9945895_SNP [dm6]	A	T	1.704e^-4	0.329	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11626491	2L_11626491_SNP [dm3] 2L_11626491_SNP [dm6]	A	C	1.706e^-4	0.329	UTR_3_PRIME kek2
2L	1614820	2L_1614820_DEL [dm3] 2L_1614820_DEL [dm6]	TAATT	T	1.709e^-4	0.329	UPSTREAM RFeSP INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25404884	3R_25404884_SNP [dm3] 3R_29579162_SNP [dm6]	A	G	1.710e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	20795868	3L_20795868_SNP [dm3] 3L_20802768_SNP [dm6]	G	T	1.711e^-4	0.329	NON_SYNONYMOUS_CODING Spc105R
2R	13551602	2R_13551602_SNP [dm3] 2R_17664097_SNP [dm6]	A	G	1.716e^-4	0.329	INTRON CCHa1-R
2L	7365409	2L_7365409_SNP [dm3] 2L_7365409_SNP [dm6]	T	A	1.717e^-4	0.329	INTRON Wnt10
3R	19565617	3R_19565617_SNP [dm3] 3R_23739895_SNP [dm6]	C	T	1.718e^-4	0.329	INTRON Hmgcr
2L	3002173	2L_3002173_SNP [dm3] 2L_3002173_SNP [dm6]	A	T	1.721e^-4	0.329	INTRON CG17265
2R	11328911	2R_11328911_SNP [dm3] 2R_15441406_SNP [dm6]	G	C	1.722e^-4	0.329	INTRON CG43729
2L	21980361	2L_21980361_SNP [dm3] 2L_21980361_SNP [dm6]	G	A	1.723e^-4	0.329	INTERGENIC
2L	12869936	2L_12869936_DEL [dm3] 2L_12869936_DEL [dm6]	AAA	CG	1.725e^-4	0.329	INTERGENIC
2R	19619023	2R_19619023_SNP [dm3] 2R_23731500_SNP [dm6]	C	T	1.727e^-4	0.329	NON_SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8880139	3L_8880139_DEL [dm3] 3L_8887039_DEL [dm6]	TC	A	1.727e^-4	0.329	INTRON dally
3L	12308512	3L_12308512_DEL [dm3] 3L_12315412_DEL [dm6]	TGCT	T	1.728e^-4	0.329	INTERGENIC
2L	3311734	2L_3311734_SNP [dm3] 2L_3311734_SNP [dm6]	C	G	1.729e^-4	0.329	DOWNSTREAM CG15406 INTRON CG3277
2L	838535	2L_838535_SNP [dm3] 2L_838535_SNP [dm6]	A	G	1.731e^-4	0.329	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4186596	2R_4186596_SNP [dm3] 2R_8299091_SNP [dm6]	A	G	1.734e^-4	0.329	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17945133	2R_17945133_SNP [dm3] 2R_22057628_SNP [dm6]	C	A	1.734e^-4	0.329	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	21854780	2L_21854780_SNP [dm3] 2L_21854780_SNP [dm6]	G	A	1.737e^-4	0.329	UPSTREAM CR44917 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	703815	3L_703815_SNP [dm3] 3L_703815_SNP [dm6]	T	C	1.737e^-4	0.329	INTERGENIC
X	359996	X_359996_SNP [dm3] X_465963_SNP [dm6]	C	T	1.745e^-4	0.329	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1344062	X_1344062_SNP [dm3] X_1450029_SNP [dm6]	A	C	1.747e^-4	0.329	UTR_3_PRIME futsch
X	6109709	X_6109709_SNP [dm3] X_6215676_SNP [dm6]	C	G	1.749e^-4	0.329	INTERGENIC
X	16613565	X_16613565_SNP [dm3] X_16719532_SNP [dm6]	G	A	1.755e^-4	0.329	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	10619196	2R_10619196_DEL [dm3] 2R_14731691_DEL [dm6]	TC	T	1.755e^-4	0.329	INTERGENIC
X	2306761	X_2306761_SNP [dm3] X_2412728_SNP [dm6]	G	T	1.755e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	1010643	X_1010643_SNP [dm3] X_1116610_SNP [dm6]	C	T	1.759e^-4	0.329	INTRON CG3655
X	1075885	X_1075885_SNP [dm3] X_1181852_SNP [dm6]	G	T	1.759e^-4	0.329	UPSTREAM CG14627 DOWNSTREAM CG11379 INTRON CG14627	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	1097958	X_1097958_SNP [dm3] X_1203925_SNP [dm6]	T	C	1.759e^-4	0.329	DOWNSTREAM CG14625 INTRON CG11381
X	1098146	X_1098146_SNP [dm3] X_1204113_SNP [dm6]	T	G	1.759e^-4	0.329	NON_SYNONYMOUS_CODING CG11381 DOWNSTREAM CG14625	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1098365	X_1098365_SNP [dm3] X_1204332_SNP [dm6]	A	G	1.759e^-4	0.329	SYNONYMOUS_CODING CG11381	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1098414	X_1098414_SNP [dm3] X_1204381_SNP [dm6]	G	C	1.759e^-4	0.329	NON_SYNONYMOUS_CODING CG11381	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1098551	X_1098551_SNP [dm3] X_1204518_SNP [dm6]	G	A	1.759e^-4	0.329	SYNONYMOUS_CODING CG11381	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1098756	X_1098756_SNP [dm3] X_1204723_SNP [dm6]	A	G	1.759e^-4	0.329	NON_SYNONYMOUS_CODING CG11381	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1099386	X_1099386_INS [dm3] X_1205353_INS [dm6]	C	CT	1.759e^-4	0.329	UTR_3_PRIME CG11381	TF binding site mE1_TFBS_cad
X	1099492	X_1099492_SNP [dm3] X_1205459_SNP [dm6]	T	A	1.759e^-4	0.329	DOWNSTREAM CG11381 INTERGENIC
X	1099684	X_1099684_SNP [dm3] X_1205651_SNP [dm6]	G	C	1.759e^-4	0.329	DOWNSTREAM CG11381 INTERGENIC
X	1102162	X_1102162_SNP [dm3] X_1208129_SNP [dm6]	T	C	1.759e^-4	0.329	DOWNSTREAM CG14624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1102168	X_1102168_SNP [dm3] X_1208135_SNP [dm6]	T	C	1.759e^-4	0.329	DOWNSTREAM CG14624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1102676	X_1102676_SNP [dm3] X_1208643_SNP [dm6]	T	C	1.759e^-4	0.329	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1103637	X_1103637_SNP [dm3] X_1209604_SNP [dm6]	A	T	1.759e^-4	0.329	UPSTREAM CG11382 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1106768	X_1106768_SNP [dm3] X_1212735_SNP [dm6]	T	A	1.759e^-4	0.329	UTR_3_PRIME CG11398 DOWNSTREAM CG11382 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	1112268	X_1112268_SNP [dm3] X_1218235_SNP [dm6]	C	T	1.759e^-4	0.329	UTR_3_PRIME CG3638	TF binding site BDTNP1_TFBS_dl
X	1112668	X_1112668_SNP [dm3] X_1218635_SNP [dm6]	T	C	1.759e^-4	0.329	UTR_3_PRIME CG3638	TF binding site BDTNP1_TFBS_dl
X	1120000	X_1120000_SNP [dm3] X_1225967_SNP [dm6]	C	T	1.759e^-4	0.329	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1120086	X_1120086_DEL [dm3] X_1226053_DEL [dm6]	CTGCT	C	1.759e^-4	0.329	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1120135	X_1120135_SNP [dm3] X_1226102_SNP [dm6]	C	T	1.759e^-4	0.329	SPLICE_SITE_REGION CG3638 INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1120649	X_1120649_SNP [dm3] X_1226616_SNP [dm6]	T	C	1.759e^-4	0.329	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1124256	X_1124256_SNP [dm3] X_1230223_SNP [dm6]	C	A	1.759e^-4	0.329	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1124292	X_1124292_SNP [dm3] X_1230259_SNP [dm6]	C	T	1.759e^-4	0.329	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1232816	X_1232816_SNP [dm3] X_1338783_SNP [dm6]	C	A	1.759e^-4	0.329	UPSTREAM CG11409 INTRON CG11409	TF binding site mE1_TFBS_HSA
X	1240946	X_1240946_SNP [dm3] X_1346913_SNP [dm6]	T	C	1.759e^-4	0.329	UPSTREAM Tsp2A & 1 other INTRON CG11418 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	146344	X_146344_SNP [dm3] X_252311_SNP [dm6]	A	G	1.759e^-4	0.329	NON_SYNONYMOUS_CODING G9a
X	1572758	X_1572758_SNP [dm3] X_1678725_SNP [dm6]	T	C	1.759e^-4	0.329	INTRON CG32809	TF binding site mE1_TFBS_sens
X	1655760	X_1655760_SNP [dm3] X_1761727_SNP [dm6]	C	G	1.759e^-4	0.329	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1716128	X_1716128_SNP [dm3] X_1822095_SNP [dm6]	G	A	1.759e^-4	0.329	NON_SYNONYMOUS_CODING CG14811 INTRON CG42666
X	199349	X_199349_SNP [dm3] X_305316_SNP [dm6]	A	C	1.759e^-4	0.329	INTRON CG3777	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	41630	X_41630_SNP [dm3] X_145243_SNP [dm6]	G	A	1.759e^-4	0.329	INTRON tyn & 1 other	TF binding site mE1_TFBS_sens
X	511272	X_511272_SNP [dm3] X_617239_SNP [dm6]	T	C	1.759e^-4	0.329	INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	600822	X_600822_SNP [dm3] X_706789_SNP [dm6]	A	T	1.759e^-4	0.329	INTRON sdk
X	608341	X_608341_SNP [dm3] X_714308_SNP [dm6]	T	C	1.759e^-4	0.329	INTRON sdk
X	670436	X_670436_SNP [dm3] X_776403_SNP [dm6]	G	A	1.759e^-4	0.329	INTRON fz3	TF binding site mE1_TFBS_sens
X	686419	X_686419_SNP [dm3] X_792386_SNP [dm6]	G	T	1.759e^-4	0.329	UPSTREAM CG16989 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	686764	X_686764_SNP [dm3] X_792731_SNP [dm6]	G	T	1.759e^-4	0.329	UPSTREAM CG16989 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	693733	X_693733_SNP [dm3] X_799700_SNP [dm6]	G	T	1.759e^-4	0.329	INTRON Rbf	TF binding site mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

TotalVariants_2R phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results