DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.008e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	<2e-16
In_2R_NS	0.0837

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	60.9409	5.8458e-14
In_2R_NS	15.7921	0.0004

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4705 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	14336797	2L_14336797_SNP [dm3] 2L_14336797_SNP [dm6]	T	A	5.709e^-7	0.253	INTRON CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5505861	2R_5505861_SNP [dm3] 2R_9618356_SNP [dm6]	A	G	8.822e^-7	0.253	INTRON Mmp2
3L	12638578	3L_12638578_SNP [dm3] 3L_12645478_SNP [dm6]	A	T	1.020e^-6	0.253	EXON CR32111
2L	4831737	2L_4831737_SNP [dm3] 2L_4831737_SNP [dm6]	C	T	1.290e^-6	0.253	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4831728	2L_4831728_SNP [dm3] 2L_4831728_SNP [dm6]	C	T	1.503e^-6	0.253	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4831707	2L_4831707_SNP [dm3] 2L_4831707_SNP [dm6]	G	C	1.567e^-6	0.253	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5505915	2R_5505915_SNP [dm3] 2R_9618410_SNP [dm6]	T	A	1.647e^-6	0.253	INTRON Mmp2
2L	6339739	2L_6339739_INS [dm3] 2L_6339739_INS [dm6]	C	TCGA	1.749e^-6	0.253	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	11637759	2L_11637759_SNP [dm3] 2L_11637759_SNP [dm6]	A	T	1.757e^-6	0.253	INTERGENIC
3L	8033392	3L_8033392_SNP [dm3] 3L_8040292_SNP [dm6]	T	C	1.813e^-6	0.253	INTRON nmo
X	8183193	X_8183193_SNP [dm3] X_8289160_SNP [dm6]	G	C	1.814e^-6	0.253	INTRON nAChRalpha3
3L	12323377	3L_12323377_SNP [dm3] 3L_12330277_SNP [dm6]	C	A	2.163e^-6	0.253	INTRON CG32105	TF binding site mE1_TFBS_cad
3R	13653464	3R_13653464_DEL [dm3] 3R_17827742_DEL [dm6]	TT	T	2.394e^-6	0.253	INTRON tinc	TF binding site mE1_TFBS_cad
2L	9396702	2L_9396702_SNP [dm3] 2L_9396702_SNP [dm6]	C	T	2.491e^-6	0.253	DOWNSTREAM CG4438 INTRON Shawl
3R	20620849	3R_20620849_SNP [dm3] 3R_24795127_SNP [dm6]	C	A	2.554e^-6	0.253	INTRON Ets96B
X	18065438	X_18065438_SNP [dm3] X_18171405_SNP [dm6]	C	T	2.690e^-6	0.253	UTR_3_PRIME Frq1
2L	19783571	2L_19783571_SNP [dm3] 2L_19783571_SNP [dm6]	T	C	2.707e^-6	0.253	INTRON CdGAPr
3L	12638598	3L_12638598_SNP [dm3] 3L_12645498_SNP [dm6]	T	G	2.873e^-6	0.253	EXON CR32111
2L	9396551	2L_9396551_SNP [dm3] 2L_9396551_SNP [dm6]	G	A	2.915e^-6	0.253	DOWNSTREAM CG4438 INTRON Shawl
2L	8702777	2L_8702777_SNP [dm3] 2L_8702777_SNP [dm6]	A	T	3.182e^-6	0.253	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
2R	18603310	2R_18603310_SNP [dm3] 2R_22715805_SNP [dm6]	T	C	3.184e^-6	0.253	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
2L	21747097	2L_21747097_SNP [dm3] 2L_21747097_SNP [dm6]	C	A	3.495e^-6	0.253	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3887450	2L_3887450_SNP [dm3] 2L_3887450_SNP [dm6]	C	T	3.780e^-6	0.253	SYNONYMOUS_CODING capu UTR_5_PRIME capu INTRON capu
3R	19565130	3R_19565130_SNP [dm3] 3R_23739408_SNP [dm6]	C	G	3.813e^-6	0.253	INTRON Hmgcr
2L	4833570	2L_4833570_SNP [dm3] 2L_4833570_SNP [dm6]	G	A	3.892e^-6	0.253	SYNONYMOUS_CODING Ir25a
2L	4209784	2L_4209784_DEL [dm3] 2L_4209784_DEL [dm6]	CC	C	4.019e^-6	0.253	INTRON ft	TF binding site mE1_TFBS_inv
3L	12638597	3L_12638597_SNP [dm3] 3L_12645497_SNP [dm6]	C	A	4.178e^-6	0.253	EXON CR32111
2L	1010550	2L_1010550_DEL [dm3] 2L_1010550_DEL [dm6]	TT	T	4.320e^-6	0.253	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
2L	21746983	2L_21746983_SNP [dm3] 2L_21746983_SNP [dm6]	A	T	4.323e^-6	0.253	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3141826	2R_3141826_DEL [dm3] 2R_7254321_DEL [dm6]	AA	A	4.579e^-6	0.253	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2936925	X_2936925_SNP [dm3] X_3042892_SNP [dm6]	T	G	5.076e^-6	0.253	INTRON kirre
2L	4341047	2L_4341047_SNP [dm3] 2L_4341047_SNP [dm6]	G	A	5.150e^-6	0.253	INTRON Atet
X	5849952	X_5849952_SNP [dm3] X_5955919_SNP [dm6]	T	A	5.245e^-6	0.253	INTRON CG6067
3R	22233658	3R_22233658_SNP [dm3] 3R_26407936_SNP [dm6]	C	T	5.304e^-6	0.253	INTERGENIC
3L	2401408	3L_2401408_SNP [dm3] 3L_2401408_SNP [dm6]	C	G	5.440e^-6	0.253	INTRON CG45186
2L	7617877	2L_7617877_SNP [dm3] 2L_7617877_SNP [dm6]	A	T	5.725e^-6	0.253	INTERGENIC
2L	3492177	2L_3492177_INS [dm3] 2L_3492177_INS [dm6]	G	GAAAGAAAA	5.759e^-6	0.253	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18855621	2R_18855621_SNP [dm3] 2R_22968098_SNP [dm6]	T	C	5.874e^-6	0.253	INTERGENIC
3L	12638570	3L_12638570_SNP [dm3] 3L_12645470_SNP [dm6]	G	A	6.273e^-6	0.253	EXON CR32111
X	18065437	X_18065437_SNP [dm3] X_18171404_SNP [dm6]	C	T	6.298e^-6	0.253	UTR_3_PRIME Frq1
3R	18581582	3R_18581582_SNP [dm3] 3R_22755860_SNP [dm6]	C	T	6.312e^-6	0.253	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9011470	2L_9011470_SNP [dm3] 2L_9011470_SNP [dm6]	T	C	6.380e^-6	0.253	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
X	16559137	X_16559137_DEL [dm3] X_16665104_DEL [dm6]	ATAT	G	6.427e^-6	0.253	UPSTREAM CG15865 INTRON r
2R	6896980	2R_6896980_SNP [dm3] 2R_11009475_SNP [dm6]	A	G	6.613e^-6	0.253	INTRON luna	TF binding site mE1_TFBS_inv
3L	12638634	3L_12638634_SNP [dm3] 3L_12645534_SNP [dm6]	C	A	6.827e^-6	0.253	EXON CR32111
2L	2225658	2L_2225658_SNP [dm3] 2L_2225658_SNP [dm6]	G	A	6.851e^-6	0.253	UTR_3_PRIME CG15387 UPSTREAM rti DOWNSTREAM papi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	23563740	3R_23563740_SNP [dm3] 3R_27738018_SNP [dm6]	G	A	6.992e^-6	0.253	INTRON Ets98B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1300670	3L_1300670_DEL [dm3] 3L_1300670_DEL [dm6]	GTAAG	G	7.130e^-6	0.253	DOWNSTREAM Rac1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10849978	3R_10849978_SNP [dm3] 3R_15024256_SNP [dm6]	T	G	7.381e^-6	0.253	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12638612	3L_12638612_SNP [dm3] 3L_12645512_SNP [dm6]	G	A	7.437e^-6	0.253	EXON CR32111
3R	18581576	3R_18581576_SNP [dm3] 3R_22755854_SNP [dm6]	T	C	7.505e^-6	0.253	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11391599	2L_11391599_SNP [dm3] 2L_11391599_SNP [dm6]	C	T	7.600e^-6	0.253	INTRON CR43681	regulatory region REDfly_CRMs
3L	12638608	3L_12638608_SNP [dm3] 3L_12645508_SNP [dm6]	A	T	7.673e^-6	0.253	EXON CR32111
2L	1876828	2L_1876828_SNP [dm3] 2L_1876828_SNP [dm6]	T	C	7.784e^-6	0.253	INTRON CG31663
2L	9839544	2L_9839544_SNP [dm3] 2L_9839544_SNP [dm6]	T	G	7.820e^-6	0.253	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
3L	20571364	3L_20571364_SNP [dm3] 3L_20578264_SNP [dm6]	C	T	7.875e^-6	0.253	INTERGENIC
2L	2225660	2L_2225660_SNP [dm3] 2L_2225660_SNP [dm6]	T	A	7.881e^-6	0.253	UTR_3_PRIME CG15387 UPSTREAM rti DOWNSTREAM papi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2225661	2L_2225661_SNP [dm3] 2L_2225661_SNP [dm6]	G	A	7.931e^-6	0.253	UTR_3_PRIME CG15387 UPSTREAM rti DOWNSTREAM papi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	7438968	X_7438968_SNP [dm3] X_7544935_SNP [dm6]	A	G	8.255e^-6	0.253	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	22062746	2L_22062746_SNP [dm3] 2L_22062746_SNP [dm6]	C	T	8.526e^-6	0.253	INTERGENIC	transposable element FlyBase
3L	12638607	3L_12638607_SNP [dm3] 3L_12645507_SNP [dm6]	G	T	8.722e^-6	0.253	EXON CR32111
3L	12638615	3L_12638615_SNP [dm3] 3L_12645515_SNP [dm6]	T	G	8.751e^-6	0.253	EXON CR32111
2L	10824249	2L_10824249_DEL [dm3] 2L_10824249_DEL [dm6]	CGAAAC	A	8.924e^-6	0.253	INTRON Nos
2L	2822837	2L_2822837_DEL [dm3] 2L_2822837_DEL [dm6]	TGAGT	T	8.951e^-6	0.253	DOWNSTREAM CG3123 INTRON Duox
2L	11901722	2L_11901722_SNP [dm3] 2L_11901722_SNP [dm6]	T	A	9.231e^-6	0.253	INTRON Pde1c
X	8183996	X_8183996_DEL [dm3] X_8289963_DEL [dm6]	TTAGTTTAAAGCTGGTGGCT...	T	9.241e^-6	0.253	INTRON nAChRalpha3
3R	25659763	3R_25659763_SNP [dm3] 3R_29834041_SNP [dm6]	A	C	9.454e^-6	0.253	SYNONYMOUS_CODING Atg16 UPSTREAM Atg16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12638611	3L_12638611_SNP [dm3] 3L_12645511_SNP [dm6]	C	G	9.525e^-6	0.253	EXON CR32111
2L	16128208	2L_16128208_SNP [dm3] 2L_16128208_SNP [dm6]	T	C	9.533e^-6	0.253	INTERGENIC
2R	3812727	2R_3812727_SNP [dm3] 2R_7925222_SNP [dm6]	A	G	9.543e^-6	0.253	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	21447726	X_21447726_SNP [dm3] X_21576699_SNP [dm6]	T	A	9.624e^-6	0.253	INTERGENIC
2L	1620263	2L_1620263_SNP [dm3] 2L_1620263_SNP [dm6]	G	A	9.707e^-6	0.253	EXON CR44603
2L	12296927	2L_12296927_SNP [dm3] 2L_12296927_SNP [dm6]	A	G	9.856e^-6	0.253	INTRON aret
2R	11873761	2R_11873761_SNP [dm3] 2R_15986256_SNP [dm6]	G	A	1.022e^-5	0.256	INTRON Strn-Mlck
2L	20086170	2L_20086170_SNP [dm3] 2L_20086170_SNP [dm6]	G	A	1.030e^-5	0.256	INTRON neb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	851138	2L_851138_SNP [dm3] 2L_851138_SNP [dm6]	C	T	1.037e^-5	0.256	UPSTREAM drongo DOWNSTREAM CG4291 EXON CR44060	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h
2L	3565146	2L_3565146_SNP [dm3] 2L_3565146_SNP [dm6]	T	C	1.110e^-5	0.265	INTERGENIC
2L	3565165	2L_3565165_SNP [dm3] 2L_3565165_SNP [dm6]	G	A	1.110e^-5	0.265	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2937656	X_2937656_SNP [dm3] X_3043623_SNP [dm6]	T	C	1.116e^-5	0.265	INTRON kirre
2L	3967200	2L_3967200_SNP [dm3] 2L_3967200_SNP [dm6]	A	G	1.136e^-5	0.265	INTRON fred
2L	9358594	2L_9358594_SNP [dm3] 2L_9358594_SNP [dm6]	A	C	1.339e^-5	0.265	INTERGENIC
3L	12638617	3L_12638617_SNP [dm3] 3L_12645517_SNP [dm6]	T	G	1.343e^-5	0.265	EXON CR32111
2L	161394	2L_161394_DEL [dm3] 2L_161394_DEL [dm6]	GGTCCCTATAGTAGAGG...	G	1.367e^-5	0.265	UTR_5_PRIME spen INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12764484	3R_12764484_SNP [dm3] 3R_16938762_SNP [dm6]	A	G	1.391e^-5	0.265	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1819310	2L_1819310_SNP [dm3] 2L_1819310_SNP [dm6]	G	A	1.392e^-5	0.265	INTERGENIC
2L	4355118	2L_4355118_SNP [dm3] 2L_4355118_SNP [dm6]	T	C	1.411e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	21017532	3R_21017532_SNP [dm3] 3R_25191810_SNP [dm6]	C	A	1.424e^-5	0.265	SYNONYMOUS_CODING dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21747859	2L_21747859_SNP [dm3] 2L_21747859_SNP [dm6]	C	G	1.434e^-5	0.265	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	20564574	3L_20564574_SNP [dm3] 3L_20571474_SNP [dm6]	G	A	1.441e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3812654	2R_3812654_SNP [dm3] 2R_7925149_SNP [dm6]	A	T	1.446e^-5	0.265	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	2944197	X_2944197_SNP [dm3] X_3050164_SNP [dm6]	A	T	1.449e^-5	0.265	INTRON kirre
3R	19585112	3R_19585112_SNP [dm3] 3R_23759390_SNP [dm6]	C	A	1.465e^-5	0.265	NON_SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site mE1_TFBS_sens
2L	3534347	2L_3534347_SNP [dm3] 2L_3534347_SNP [dm6]	C	G	1.477e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9011468	2L_9011468_SNP [dm3] 2L_9011468_SNP [dm6]	A	T	1.505e^-5	0.265	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
X	2944225	X_2944225_SNP [dm3] X_3050192_SNP [dm6]	T	A	1.527e^-5	0.265	INTRON kirre
3L	12319994	3L_12319994_SNP [dm3] 3L_12326894_SNP [dm6]	T	C	1.531e^-5	0.265	INTERGENIC
2R	19543550	2R_19543550_SNP [dm3] 2R_23656027_SNP [dm6]	T	G	1.543e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20091564	2L_20091564_SNP [dm3] 2L_20091564_SNP [dm6]	T	C	1.543e^-5	0.265	UPSTREAM CG10721 & 1 other INTRON CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2634891	2L_2634891_SNP [dm3] 2L_2634891_SNP [dm6]	A	T	1.544e^-5	0.265	INTERGENIC
3R	20634435	3R_20634435_SNP [dm3] 3R_24808713_SNP [dm6]	T	C	1.558e^-5	0.265	DOWNSTREAM CG6980 INTRON CG5807
X	2944057	X_2944057_SNP [dm3] X_3050024_SNP [dm6]	A	T	1.582e^-5	0.265	INTRON kirre
2L	18429643	2L_18429643_SNP [dm3] 2L_18429643_SNP [dm6]	G	A	1.612e^-5	0.265	INTERGENIC
3L	12637790	3L_12637790_SNP [dm3] 3L_12644690_SNP [dm6]	T	A	1.632e^-5	0.265	INTRON CR32111	regulatory region REDfly_CRMs
2R	3130149	2R_3130149_SNP [dm3] 2R_7242644_SNP [dm6]	T	A	1.646e^-5	0.265	DOWNSTREAM Ady43A INTERGENIC
2L	21844397	2L_21844397_SNP [dm3] 2L_21844397_SNP [dm6]	T	A	1.661e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22063201	2L_22063201_SNP [dm3] 2L_22063201_SNP [dm6]	A	G	1.701e^-5	0.265	INTERGENIC
2L	8180521	2L_8180521_SNP [dm3] 2L_8180521_SNP [dm6]	A	G	1.733e^-5	0.265	SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
3R	13653433	3R_13653433_SNP [dm3] 3R_17827711_SNP [dm6]	A	C	1.735e^-5	0.265	INTRON tinc	TF binding site mE1_TFBS_cad
2L	16132587	2L_16132587_SNP [dm3] 2L_16132587_SNP [dm6]	C	T	1.744e^-5	0.265	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8149658	2L_8149658_SNP [dm3] 2L_8149658_SNP [dm6]	G	A	1.748e^-5	0.265	INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	20086068	2L_20086068_SNP [dm3] 2L_20086068_SNP [dm6]	T	C	1.754e^-5	0.265	UPSTREAM fok INTRON neb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2R	3130152	2R_3130152_DEL [dm3] 2R_7242647_DEL [dm6]	CTTT	C	1.760e^-5	0.265	DOWNSTREAM Ady43A INTERGENIC
2L	6842051	2L_6842051_SNP [dm3] 2L_6842051_SNP [dm6]	A	T	1.776e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2921664	2L_2921664_SNP [dm3] 2L_2921664_SNP [dm6]	G	C	1.779e^-5	0.265	INTRON lilli
3R	25647683	3R_25647683_SNP [dm3] 3R_29821961_SNP [dm6]	T	A	1.781e^-5	0.265	INTRON neo
2L	3605858	2L_3605858_SNP [dm3] 2L_3605858_SNP [dm6]	T	C	1.785e^-5	0.265	SYNONYMOUS_CODING odd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9333262	3L_9333262_SNP [dm3] 3L_9340162_SNP [dm6]	G	A	1.790e^-5	0.265	UPSTREAM PGRP-LC INTRON PGRP-LC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15663648	3L_15663648_SNP [dm3] 3L_15670548_SNP [dm6]	A	T	1.807e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
2R	5540895	2R_5540895_INS [dm3] 2R_9653390_INS [dm6]	T	TT	1.817e^-5	0.265	INTRON Mmp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7146729	2L_7146729_DEL [dm3] 2L_7146729_DEL [dm6]	GG	G	1.829e^-5	0.265	INTRON Pvf3
2L	21747825	2L_21747825_SNP [dm3] 2L_21747825_SNP [dm6]	C	A	1.829e^-5	0.265	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17070153	2R_17070153_SNP [dm3] 2R_21182648_SNP [dm6]	T	C	1.841e^-5	0.265	UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7439071	X_7439071_SNP [dm3] X_7545038_SNP [dm6]	T	A	1.860e^-5	0.265	INTRON CG32719
3L	12638593	3L_12638593_SNP [dm3] 3L_12645493_SNP [dm6]	T	A	1.913e^-5	0.265	EXON CR32111
2R	4101991	2R_4101991_SNP [dm3] 2R_8214486_SNP [dm6]	C	A	1.918e^-5	0.265	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9086768	2L_9086768_SNP [dm3] 2L_9086768_SNP [dm6]	G	A	1.936e^-5	0.265	NON_SYNONYMOUS_CODING Toll-4
2L	8168790	2L_8168790_SNP [dm3] 2L_8168790_SNP [dm6]	A	C	1.936e^-5	0.265	INTRON Piezo
2L	6642950	2L_6642950_SNP [dm3] 2L_6642950_SNP [dm6]	G	T	2.009e^-5	0.265	INTRON CG31635	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3165408	2L_3165408_SNP [dm3] 2L_3165408_SNP [dm6]	C	T	2.015e^-5	0.265	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8494260	2R_8494260_SNP [dm3] 2R_12606755_SNP [dm6]	A	T	2.016e^-5	0.265	INTRON Amph
2L	20093206	2L_20093206_SNP [dm3] 2L_20093206_SNP [dm6]	G	T	2.026e^-5	0.265	UTR_3_PRIME Taf13 UPSTREAM nesd DOWNSTREAM CG10721	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	163516	2L_163516_SNP [dm3] 2L_163516_SNP [dm6]	A	C	2.039e^-5	0.265	INTRON spen	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18848584	3R_18848584_SNP [dm3] 3R_23022862_SNP [dm6]	G	T	2.065e^-5	0.265	INTRON lmd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25796033	3R_25796033_SNP [dm3] 3R_29970311_SNP [dm6]	T	C	2.094e^-5	0.265	UPSTREAM TkR99D INTERGENIC
2L	21759091	2L_21759091_SNP [dm3] 2L_21759091_SNP [dm6]	C	A	2.095e^-5	0.265	INTRON CG1416
3L	17610836	3L_17610836_SNP [dm3] 3L_17617736_SNP [dm6]	A	T	2.102e^-5	0.265	INTRON Eip74EF
2R	20595942	2R_20595942_SNP [dm3] 2R_24708419_SNP [dm6]	G	A	2.112e^-5	0.265	INTRON Mid1	TF binding site mE1_TFBS_chinmo
X	12448138	X_12448138_SNP [dm3] X_12554105_SNP [dm6]	A	G	2.118e^-5	0.265	SYNONYMOUS_CODING Cpr11B INTRON CG43921
2L	3001803	2L_3001803_SNP [dm3] 2L_3001803_SNP [dm6]	A	C	2.137e^-5	0.265	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	9338527	3L_9338527_SNP [dm3] 3L_9345427_SNP [dm6]	G	A	2.208e^-5	0.265	INTRON PGRP-LC
3L	12638580	3L_12638580_DEL [dm3] 3L_12645480_DEL [dm6]	GGA	G	2.214e^-5	0.265	EXON CR32111
3L	8487400	3L_8487400_SNP [dm3] 3L_8494300_SNP [dm6]	A	G	2.215e^-5	0.265	UTR_5_PRIME CG43163
2L	15421138	2L_15421138_SNP [dm3] 2L_15421138_SNP [dm6]	T	C	2.229e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9565399	3L_9565399_SNP [dm3] 3L_9572299_SNP [dm6]	A	G	2.233e^-5	0.265	INTRON CG42673
3R	27007483	3R_27007483_SNP [dm3] 3R_31181761_SNP [dm6]	A	G	2.241e^-5	0.265	INTRON mesh	TF binding site mE1_TFBS_cad
2L	13074646	2L_13074646_SNP [dm3] 2L_13074646_SNP [dm6]	C	T	2.264e^-5	0.265	INTERGENIC
2L	20425212	2L_20425212_SNP [dm3] 2L_20425212_SNP [dm6]	A	C	2.280e^-5	0.265	UPSTREAM CG15130 & 1 other INTERGENIC
2L	4005846	2L_4005846_SNP [dm3] 2L_4005846_SNP [dm6]	C	T	2.286e^-5	0.265	UPSTREAM CG15423 DOWNSTREAM CG15422 INTERGENIC
2L	15093587	2L_15093587_SNP [dm3] 2L_15093587_SNP [dm6]	G	T	2.295e^-5	0.265	SYNONYMOUS_CODING CG15270
2L	21862356	2L_21862356_SNP [dm3] 2L_21862356_SNP [dm6]	A	C	2.304e^-5	0.265	INTRON CR44917
2L	8702844	2L_8702844_INS [dm3] 2L_8702844_INS [dm6]	A	AA	2.330e^-5	0.265	UPSTREAM CR44992 INTRON Hnf4
2L	22063003	2L_22063003_INS [dm3] 2L_22063003_INS [dm6]	A	AA	2.332e^-5	0.265	INTERGENIC
2L	6842059	2L_6842059_SNP [dm3] 2L_6842059_SNP [dm6]	T	A	2.339e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9011456	2L_9011456_SNP [dm3] 2L_9011456_SNP [dm6]	T	A	2.357e^-5	0.265	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	9011467	2L_9011467_SNP [dm3] 2L_9011467_SNP [dm6]	T	A	2.378e^-5	0.265	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	12638199	3L_12638199_SNP [dm3] 3L_12645099_SNP [dm6]	C	A	2.383e^-5	0.265	INTRON CR32111	regulatory region REDfly_CRMs
2L	16166896	2L_16166896_SNP [dm3] 2L_16166896_SNP [dm6]	G	A	2.393e^-5	0.265	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
2L	16131418	2L_16131418_SNP [dm3] 2L_16131418_SNP [dm6]	G	T	2.431e^-5	0.265	INTERGENIC
2L	6842062	2L_6842062_SNP [dm3] 2L_6842062_SNP [dm6]	C	G	2.438e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9565395	3L_9565395_SNP [dm3] 3L_9572295_SNP [dm6]	T	C	2.443e^-5	0.265	INTRON CG42673
X	18064878	X_18064878_SNP [dm3] X_18170845_SNP [dm6]	A	G	2.443e^-5	0.265	UTR_3_PRIME Frq1
2L	6842052	2L_6842052_SNP [dm3] 2L_6842052_SNP [dm6]	A	C	2.464e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9588278	2L_9588278_SNP [dm3] 2L_9588278_SNP [dm6]	C	A	2.477e^-5	0.265	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5505862	2R_5505862_SNP [dm3] 2R_9618357_SNP [dm6]	A	G	2.485e^-5	0.265	INTRON Mmp2
2L	15473588	2L_15473588_SNP [dm3] 2L_15473588_SNP [dm6]	T	A	2.486e^-5	0.265	INTERGENIC
3L	8344155	3L_8344155_SNP [dm3] 3L_8351055_SNP [dm6]	T	G	2.495e^-5	0.265	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad
2L	13074652	2L_13074652_SNP [dm3] 2L_13074652_SNP [dm6]	C	T	2.511e^-5	0.265	INTERGENIC
2L	9011461	2L_9011461_DEL [dm3] 2L_9011461_DEL [dm6]	ACGC	TA	2.516e^-5	0.265	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2R	5505869	2R_5505869_SNP [dm3] 2R_9618364_SNP [dm6]	C	T	2.517e^-5	0.265	INTRON Mmp2
2L	1621069	2L_1621069_SNP [dm3] 2L_1621069_SNP [dm6]	G	C	2.528e^-5	0.265	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18849432	3R_18849432_SNP [dm3] 3R_23023710_SNP [dm6]	C	A	2.539e^-5	0.265	INTRON lmd	TF binding site BDTNP1_TFBS_twi
3L	9128782	3L_9128782_SNP [dm3] 3L_9135682_SNP [dm6]	A	T	2.552e^-5	0.265	UTR_3_PRIME Dhpr DOWNSTREAM Use1	TF binding site BDTNP1_TFBS_dl
2L	9011458	2L_9011458_SNP [dm3] 2L_9011458_SNP [dm6]	G	C	2.569e^-5	0.265	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	12200931	3L_12200931_SNP [dm3] 3L_12207831_SNP [dm6]	G	A	2.572e^-5	0.265	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad
2L	6842058	2L_6842058_SNP [dm3] 2L_6842058_SNP [dm6]	A	G	2.590e^-5	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15139143	2L_15139143_INS [dm3] 2L_15139143_INS [dm6]	G	GTGTAATAA	2.591e^-5	0.265	INTERGENIC
2L	19783010	2L_19783010_SNP [dm3] 2L_19783010_SNP [dm6]	A	G	2.594e^-5	0.265	INTRON CdGAPr	TF binding site mE1_TFBS_inv
2L	2125885	2L_2125885_SNP [dm3] 2L_2125885_SNP [dm6]	T	A	2.597e^-5	0.265	INTERGENIC
3L	9565396	3L_9565396_SNP [dm3] 3L_9572296_SNP [dm6]	T	G	2.602e^-5	0.265	INTRON CG42673
2L	10752994	2L_10752994_SNP [dm3] 2L_10752994_SNP [dm6]	A	T	2.604e^-5	0.265	INTRON CG17124	TF binding site mE1_TFBS_cad
3L	7863533	3L_7863533_SNP [dm3] 3L_7870433_SNP [dm6]	A	C	2.640e^-5	0.265	INTRON CG32365
3L	1300825	3L_1300825_SNP [dm3] 3L_1300825_SNP [dm6]	A	T	2.644e^-5	0.265	DOWNSTREAM Rac1 & 1 other INTERGENIC
2L	20061336	2L_20061336_SNP [dm3] 2L_20061336_SNP [dm6]	T	C	2.653e^-5	0.265	UTR_5_PRIME barr UPSTREAM lok & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	3952196	2L_3952196_SNP [dm3] 2L_3952196_SNP [dm6]	G	A	2.657e^-5	0.265	INTRON fred
2L	9047596	2L_9047596_SNP [dm3] 2L_9047596_SNP [dm6]	C	G	2.687e^-5	0.265	INTERGENIC
2R	12324182	2R_12324182_SNP [dm3] 2R_16436677_SNP [dm6]	G	A	2.690e^-5	0.265	UPSTREAM CG7848 INTERGENIC
2L	10821994	2L_10821994_DEL [dm3] 2L_10821994_DEL [dm6]	ACTAT	A	2.691e^-5	0.265	DOWNSTREAM CG17134 INTRON Nos
X	2415362	X_2415362_SNP [dm3] X_2521329_SNP [dm6]	C	T	2.696e^-5	0.265	INTRON trol	TF binding site BDTNP1_TFBS_dl
X	18065572	X_18065572_SNP [dm3] X_18171539_SNP [dm6]	A	G	2.697e^-5	0.265	UTR_3_PRIME Frq1
3L	12638161	3L_12638161_SNP [dm3] 3L_12645061_SNP [dm6]	G	T	2.715e^-5	0.265	INTRON CR32111	regulatory region REDfly_CRMs
X	13426424	X_13426424_MNP [dm3] X_13532391_MNP [dm6]	CAG	ACC	2.725e^-5	0.265	INTERGENIC
2L	6910100	2L_6910100_SNP [dm3] 2L_6910100_SNP [dm6]	T	C	2.752e^-5	0.265	SYNONYMOUS_CODING Rat1 DOWNSTREAM Wee1	TF binding site mE1_TFBS_sens
2L	4818421	2L_4818421_SNP [dm3] 2L_4818421_SNP [dm6]	G	T	2.761e^-5	0.265	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8660462	2L_8660462_SNP [dm3] 2L_8660462_SNP [dm6]	C	T	2.798e^-5	0.265	SYNONYMOUS_CODING Sema-1a
2L	4861953	2L_4861953_DEL [dm3] 2L_4861953_DEL [dm6]	GG	G	2.826e^-5	0.265	INTRON pog
2L	6343381	2L_6343381_SNP [dm3] 2L_6343381_SNP [dm6]	A	T	2.838e^-5	0.265	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12556530	3R_12556530_SNP [dm3] 3R_16730808_SNP [dm6]	A	C	2.839e^-5	0.265	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	21855509	2L_21855509_SNP [dm3] 2L_21855509_SNP [dm6]	T	C	2.850e^-5	0.265	INTRON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	985221	2L_985221_SNP [dm3] 2L_985221_SNP [dm6]	C	T	2.855e^-5	0.265	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21447783	X_21447783_SNP [dm3] X_21576756_SNP [dm6]	C	T	2.863e^-5	0.265	INTERGENIC
2L	1620442	2L_1620442_SNP [dm3] 2L_1620442_SNP [dm6]	G	A	2.864e^-5	0.265	EXON CR44603
2L	16132946	2L_16132946_SNP [dm3] 2L_16132946_SNP [dm6]	T	G	2.884e^-5	0.265	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6339718	2L_6339718_SNP [dm3] 2L_6339718_SNP [dm6]	G	A	2.903e^-5	0.265	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	21854007	2L_21854007_SNP [dm3] 2L_21854007_SNP [dm6]	G	T	2.908e^-5	0.265	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3222433	X_3222433_SNP [dm3] X_3328400_SNP [dm6]	T	C	2.918e^-5	0.265	INTRON CR44886 & 1 other
2L	2804588	2L_2804588_SNP [dm3] 2L_2804588_SNP [dm6]	C	G	2.927e^-5	0.265	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6765373	2L_6765373_SNP [dm3] 2L_6765373_SNP [dm6]	G	A	2.936e^-5	0.265	NON_SYNONYMOUS_CODING CG11321
3L	10503033	3L_10503033_SNP [dm3] 3L_10509933_SNP [dm6]	G	A	2.940e^-5	0.265	INTRON A2bp1
3L	12638601	3L_12638601_MNP [dm3] 3L_12645501_MNP [dm6]	CCAAT	TTGTG	2.992e^-5	0.266	EXON CR32111
2L	3695822	2L_3695822_SNP [dm3] 2L_3695822_SNP [dm6]	A	T	3.001e^-5	0.266	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2R	9884037	2R_9884037_SNP [dm3] 2R_13996532_SNP [dm6]	A	G	3.014e^-5	0.266	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7877765	3R_7877765_SNP [dm3] 3R_12052043_SNP [dm6]	A	T	3.036e^-5	0.266	INTERGENIC
X	18065569	X_18065569_SNP [dm3] X_18171536_SNP [dm6]	T	C	3.041e^-5	0.266	UTR_3_PRIME Frq1
2L	21844701	2L_21844701_SNP [dm3] 2L_21844701_SNP [dm6]	C	T	3.049e^-5	0.266	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12495929	3L_12495929_SNP [dm3] 3L_12502829_SNP [dm6]	C	T	3.071e^-5	0.266	SYNONYMOUS_CODING CG10646 DOWNSTREAM CG10681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3130145	2R_3130145_DEL [dm3] 2R_7242640_DEL [dm6]	GAG	A	3.071e^-5	0.266	DOWNSTREAM Ady43A INTERGENIC
3L	12638640	3L_12638640_SNP [dm3] 3L_12645540_SNP [dm6]	T	C	3.107e^-5	0.266	EXON CR32111
X	3222439	X_3222439_SNP [dm3] X_3328406_SNP [dm6]	C	A	3.142e^-5	0.266	INTRON CR44886 & 1 other
2L	21746958	2L_21746958_SNP [dm3] 2L_21746958_SNP [dm6]	A	G	3.150e^-5	0.266	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20233640	2L_20233640_SNP [dm3] 2L_20233640_SNP [dm6]	A	G	3.212e^-5	0.266	INTERGENIC
3L	7607969	3L_7607969_SNP [dm3] 3L_7614869_SNP [dm6]	C	T	3.227e^-5	0.266	INTRON CG33275
2L	11391633	2L_11391633_SNP [dm3] 2L_11391633_SNP [dm6]	C	T	3.247e^-5	0.266	INTRON CR43681	regulatory region REDfly_CRMs
2L	2147484	2L_2147484_DEL [dm3] 2L_2147484_DEL [dm6]	CTTTTGG	C	3.249e^-5	0.266	UPSTREAM CG7261 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5530365	2R_5530365_SNP [dm3] 2R_9642860_SNP [dm6]	A	T	3.249e^-5	0.266	INTRON Mmp2
3R	12253192	3R_12253192_SNP [dm3] 3R_16427470_SNP [dm6]	C	A	3.250e^-5	0.266	UPSTREAM CR45631 INTERGENIC	regulatory region REDfly_CRMs
2L	21019215	2L_21019215_SNP [dm3] 2L_21019215_SNP [dm6]	C	T	3.250e^-5	0.266	INTRON CG42238
2L	13666628	2L_13666628_SNP [dm3] 2L_13666628_SNP [dm6]	C	A	3.254e^-5	0.266	INTRON CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3385885	2L_3385885_DEL [dm3] 2L_3385885_DEL [dm6]	TT	T	3.274e^-5	0.266	DOWNSTREAM CR45301 INTERGENIC
2L	1619902	2L_1619902_SNP [dm3] 2L_1619902_SNP [dm6]	G	A	3.287e^-5	0.266	EXON CR44603
2R	3130151	2R_3130151_SNP [dm3] 2R_7242646_SNP [dm6]	T	G	3.309e^-5	0.266	DOWNSTREAM Ady43A INTERGENIC
2L	152557	2L_152557_SNP [dm3] 2L_152557_SNP [dm6]	G	C	3.316e^-5	0.266	NON_SYNONYMOUS_CODING CG42399 DOWNSTREAM CG3709 INTRON CG11455	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18279125	3R_18279125_SNP [dm3] 3R_22453403_SNP [dm6]	C	A	3.360e^-5	0.266	INTRON CG34376	TF binding site mE1_TFBS_cad
2L	5746705	2L_5746705_SNP [dm3] 2L_5746705_SNP [dm6]	C	T	3.365e^-5	0.266	SYNONYMOUS_CODING CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19504011	2L_19504011_SNP [dm3] 2L_19504011_SNP [dm6]	T	C	3.367e^-5	0.266	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20092049	2L_20092049_SNP [dm3] 2L_20092049_SNP [dm6]	C	T	3.375e^-5	0.266	SYNONYMOUS_CODING CG10721 UPSTREAM CG10747	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_sens
2L	8702799	2L_8702799_SNP [dm3] 2L_8702799_SNP [dm6]	A	G	3.415e^-5	0.266	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
X	12247391	X_12247391_SNP [dm3] X_12353358_SNP [dm6]	T	G	3.447e^-5	0.266	INTERGENIC
2R	8494257	2R_8494257_SNP [dm3] 2R_12606752_SNP [dm6]	C	A	3.452e^-5	0.266	INTRON Amph
3L	15663472	3L_15663472_SNP [dm3] 3L_15670372_SNP [dm6]	A	G	3.453e^-5	0.266	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	24405766	3R_24405766_SNP [dm3] 3R_28580044_SNP [dm6]	A	G	3.474e^-5	0.266	DOWNSTREAM fkh INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	3812910	2R_3812910_SNP [dm3] 2R_7925405_SNP [dm6]	A	T	3.493e^-5	0.266	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	9011489	2L_9011489_SNP [dm3] 2L_9011489_SNP [dm6]	T	A	3.494e^-5	0.266	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	7864132	3L_7864132_SNP [dm3] 3L_7871032_SNP [dm6]	G	C	3.528e^-5	0.266	INTRON CG32365
2L	4830920	2L_4830920_SNP [dm3] 2L_4830920_SNP [dm6]	G	C	3.531e^-5	0.266	UTR_3_PRIME Ir25a UPSTREAM mir-4912 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	3.539e^-5	0.266	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2L	10098800	2L_10098800_SNP [dm3] 2L_10098800_SNP [dm6]	A	G	3.540e^-5	0.266	INTRON CG34109 & 1 other
2L	21858780	2L_21858780_SNP [dm3] 2L_21858780_SNP [dm6]	C	T	3.547e^-5	0.266	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	8183255	X_8183255_SNP [dm3] X_8289222_SNP [dm6]	T	G	3.558e^-5	0.266	INTRON nAChRalpha3
2R	6896964	2R_6896964_SNP [dm3] 2R_11009459_SNP [dm6]	G	T	3.567e^-5	0.266	INTRON luna	TF binding site mE1_TFBS_inv
2L	20084475	2L_20084475_DEL [dm3] 2L_20084475_DEL [dm6]	ACA	A	3.579e^-5	0.266	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10300210	3L_10300210_SNP [dm3] 3L_10307110_SNP [dm6]	A	T	3.604e^-5	0.266	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6339731	2L_6339731_SNP [dm3] 2L_6339731_SNP [dm6]	C	T	3.617e^-5	0.266	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	6339754	2L_6339754_SNP [dm3] 2L_6339754_SNP [dm6]	C	A	3.617e^-5	0.266	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	7118089	2R_7118089_SNP [dm3] 2R_11230584_SNP [dm6]	C	A	3.632e^-5	0.266	INTRON metro	TF binding site mE1_TFBS_chinmo
3L	16463665	3L_16463665_SNP [dm3] 3L_16470565_SNP [dm6]	T	G	3.653e^-5	0.266	UTR_3_PRIME aos INTRON CG33158
2L	157633	2L_157633_SNP [dm3] 2L_157633_SNP [dm6]	G	T	3.658e^-5	0.266	UTR_3_PRIME CG3436 DOWNSTREAM CG33635	TF binding site mE1_TFBS_cad
2L	19651404	2L_19651404_SNP [dm3] 2L_19651404_SNP [dm6]	C	A	3.670e^-5	0.266	INTRON Lar
2L	8702537	2L_8702537_SNP [dm3] 2L_8702537_SNP [dm6]	A	C	3.692e^-5	0.266	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
X	18431590	X_18431590_SNP [dm3] X_18537557_SNP [dm6]	C	T	3.698e^-5	0.266	INTRON Bx
3R	13653406	3R_13653406_SNP [dm3] 3R_17827684_SNP [dm6]	C	G	3.723e^-5	0.266	INTRON tinc	TF binding site mE1_TFBS_cad
2L	17515658	2L_17515658_SNP [dm3] 2L_17515658_SNP [dm6]	G	A	3.734e^-5	0.266	INTRON Dhc36C	TF binding site BDTNP1_TFBS_twi
3L	8382487	3L_8382487_SNP [dm3] 3L_8389387_SNP [dm6]	T	C	3.735e^-5	0.266	SYNONYMOUS_CODING ImpE1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	3646830	2L_3646830_SNP [dm3] 2L_3646830_SNP [dm6]	G	C	3.738e^-5	0.266	UPSTREAM for INTRON for
2L	6574816	2L_6574816_SNP [dm3] 2L_6574816_SNP [dm6]	A	G	3.740e^-5	0.266	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12328044	2L_12328044_SNP [dm3] 2L_12328044_SNP [dm6]	A	G	3.797e^-5	0.268	INTERGENIC
2L	3960981	2L_3960981_SNP [dm3] 2L_3960981_SNP [dm6]	T	A	3.799e^-5	0.268	INTRON fred
2L	3952274	2L_3952274_SNP [dm3] 2L_3952274_SNP [dm6]	G	A	3.870e^-5	0.269	INTRON fred
2L	3952293	2L_3952293_SNP [dm3] 2L_3952293_SNP [dm6]	C	A	3.870e^-5	0.269	INTRON fred
2R	3130165	2R_3130165_DEL [dm3] 2R_7242660_DEL [dm6]	CGTCACTT	AAG	3.899e^-5	0.269	DOWNSTREAM Ady43A INTERGENIC
X	9326556	X_9326556_INS [dm3] X_9432523_INS [dm6]	C	CGC	3.899e^-5	0.269	INTRON mgl
3R	24508657	3R_24508657_SNP [dm3] 3R_28682935_SNP [dm6]	G	A	3.910e^-5	0.269	INTRON CG9990	TF binding site BDTNP1_TFBS_z
X	12111468	X_12111468_SNP [dm3] X_12217435_SNP [dm6]	C	G	3.912e^-5	0.269	INTRON Ten-a	TF binding site mE1_TFBS_cad
2R	5523831	2R_5523831_SNP [dm3] 2R_9636326_SNP [dm6]	C	A	3.943e^-5	0.269	DOWNSTREAM CR44070 INTRON Mmp2
2L	6339732	2L_6339732_SNP [dm3] 2L_6339732_SNP [dm6]	A	G	3.961e^-5	0.269	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	3590007	2L_3590007_SNP [dm3] 2L_3590007_SNP [dm6]	G	A	3.973e^-5	0.269	EXON CR43823
2L	11882005	2L_11882005_SNP [dm3] 2L_11882005_SNP [dm6]	G	A	3.987e^-5	0.269	INTRON Pde1c
2L	1402928	2L_1402928_SNP [dm3] 2L_1402928_SNP [dm6]	A	T	4.000e^-5	0.269	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3016388	2L_3016388_SNP [dm3] 2L_3016388_SNP [dm6]	G	T	4.021e^-5	0.269	DOWNSTREAM CG17224 & 1 other INTERGENIC
3R	27004355	3R_27004355_SNP [dm3] 3R_31178633_SNP [dm6]	C	T	4.026e^-5	0.269	SYNONYMOUS_CODING mesh DOWNSTREAM Gycbeta100B & 1 other
3R	13584030	3R_13584030_SNP [dm3] 3R_17758308_SNP [dm6]	G	A	4.056e^-5	0.269	INTRON TyrR
2L	16132409	2L_16132409_SNP [dm3] 2L_16132409_SNP [dm6]	A	G	4.065e^-5	0.269	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5524005	2R_5524005_SNP [dm3] 2R_9636500_SNP [dm6]	G	A	4.074e^-5	0.269	DOWNSTREAM CR44070 INTRON Mmp2
3R	7874708	3R_7874708_SNP [dm3] 3R_12048986_SNP [dm6]	T	C	4.084e^-5	0.269	UTR_5_PRIME CG14739	TF binding site mE1_TFBS_cad
2L	6042336	2L_6042336_SNP [dm3] 2L_6042336_SNP [dm6]	T	G	4.116e^-5	0.269	SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4009856	2L_4009856_SNP [dm3] 2L_4009856_SNP [dm6]	G	A	4.125e^-5	0.269	DOWNSTREAM CG43774 INTERGENIC
2L	685180	2L_685180_SNP [dm3] 2L_685180_SNP [dm6]	T	C	4.130e^-5	0.269	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12377374	X_12377374_SNP [dm3] X_12483341_SNP [dm6]	C	T	4.133e^-5	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18440359	2L_18440359_SNP [dm3] 2L_18440359_SNP [dm6]	C	T	4.156e^-5	0.269	DOWNSTREAM RpS26 INTERGENIC
2R	5505897	2R_5505897_SNP [dm3] 2R_9618392_SNP [dm6]	A	T	4.167e^-5	0.269	INTRON Mmp2
2L	10428667	2L_10428667_DEL [dm3] 2L_10428667_DEL [dm6]	AAT	A	4.188e^-5	0.269	UPSTREAM CG5188 DOWNSTREAM KdelR INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16448750	2L_16448750_SNP [dm3] 2L_16448750_SNP [dm6]	T	A	4.191e^-5	0.269	UPSTREAM Idgf2 & 1 other INTRON Idgf2
3L	9337149	3L_9337149_SNP [dm3] 3L_9344049_SNP [dm6]	C	A	4.206e^-5	0.269	UPSTREAM PGRP-LC INTRON PGRP-LC
2L	1620269	2L_1620269_SNP [dm3] 2L_1620269_SNP [dm6]	C	T	4.222e^-5	0.269	EXON CR44603
3L	10065595	3L_10065595_SNP [dm3] 3L_10072495_SNP [dm6]	T	G	4.243e^-5	0.269	DOWNSTREAM dpr6 INTRON dpr6
3L	12308512	3L_12308512_DEL [dm3] 3L_12315412_DEL [dm6]	TGCT	T	4.253e^-5	0.269	INTERGENIC
2L	15499113	2L_15499113_SNP [dm3] 2L_15499113_SNP [dm6]	A	C	4.260e^-5	0.269	UPSTREAM lace INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	9886941	3L_9886941_SNP [dm3] 3L_9893841_SNP [dm6]	G	T	4.288e^-5	0.269	UTR_5_PRIME CG6709 UTR_3_PRIME CG14164 DOWNSTREAM CG14164 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6763858	2L_6763858_SNP [dm3] 2L_6763858_SNP [dm6]	G	A	4.305e^-5	0.269	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7363705	2L_7363705_SNP [dm3] 2L_7363705_SNP [dm6]	G	A	4.312e^-5	0.269	UTR_5_PRIME Wnt10
2L	14753005	2L_14753005_SNP [dm3] 2L_14753005_SNP [dm6]	T	A	4.312e^-5	0.269	INTERGENIC
3L	10066407	3L_10066407_DEL [dm3] 3L_10073307_DEL [dm6]	TAC	A	4.317e^-5	0.269	INTRON dpr6
2L	14059489	2L_14059489_SNP [dm3] 2L_14059489_SNP [dm6]	C	A	4.326e^-5	0.269	INTRON nAChRalpha5
2L	17030197	2L_17030197_SNP [dm3] 2L_17030197_SNP [dm6]	T	A	4.373e^-5	0.269	INTERGENIC
3L	9337117	3L_9337117_SNP [dm3] 3L_9344017_SNP [dm6]	G	C	4.377e^-5	0.269	UPSTREAM PGRP-LC INTRON PGRP-LC
2R	3911049	2R_3911049_DEL [dm3] 2R_8023544_DEL [dm6]	GCTCG	G	4.398e^-5	0.269	EXON CR45267
2L	10811576	2L_10811576_SNP [dm3] 2L_10811576_SNP [dm6]	G	C	4.401e^-5	0.269	INTRON Nos
2R	12638054	2R_12638054_SNP [dm3] 2R_16750549_SNP [dm6]	A	T	4.404e^-5	0.269	UPSTREAM Acp53Ea DOWNSTREAM Acp53C14c & 1 other INTERGENIC
2L	4862010	2L_4862010_SNP [dm3] 2L_4862010_SNP [dm6]	T	C	4.422e^-5	0.269	INTRON pog
3L	6586849	3L_6586849_SNP [dm3] 3L_6593749_SNP [dm6]	T	C	4.434e^-5	0.269	UTR_3_PRIME CG18769 DOWNSTREAM ndl
2L	6042014	2L_6042014_SNP [dm3] 2L_6042014_SNP [dm6]	G	A	4.499e^-5	0.272	DOWNSTREAM CG31643 INTRON ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4009836	2L_4009836_SNP [dm3] 2L_4009836_SNP [dm6]	T	C	4.503e^-5	0.272	DOWNSTREAM CG43774 INTERGENIC
2L	4009499	2L_4009499_SNP [dm3] 2L_4009499_SNP [dm6]	C	T	4.525e^-5	0.272	DOWNSTREAM CG43774 INTERGENIC
2L	4861942	2L_4861942_SNP [dm3] 2L_4861942_SNP [dm6]	A	G	4.545e^-5	0.272	INTRON pog
2L	5195254	2L_5195254_SNP [dm3] 2L_5195254_SNP [dm6]	T	C	4.577e^-5	0.273	SYNONYMOUS_CODING Msp300 UPSTREAM snmRNA:128	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20087207	2L_20087207_SNP [dm3] 2L_20087207_SNP [dm6]	A	G	4.589e^-5	0.273	INTRON neb
X	7969009	X_7969009_SNP [dm3] X_8074976_SNP [dm6]	T	C	4.606e^-5	0.273	SYNONYMOUS_CODING Upf2 UPSTREAM CG1571	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2147534	2L_2147534_SNP [dm3] 2L_2147534_SNP [dm6]	A	T	4.631e^-5	0.273	UTR_5_PRIME CG7261 UPSTREAM CG11723	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6268288	2L_6268288_SNP [dm3] 2L_6268288_SNP [dm6]	G	A	4.647e^-5	0.273	INTRON Ddr
2R	6896965	2R_6896965_SNP [dm3] 2R_11009460_SNP [dm6]	G	A	4.648e^-5	0.273	INTRON luna	TF binding site mE1_TFBS_inv
3L	20784318	3L_20784318_SNP [dm3] 3L_20791218_SNP [dm6]	G	A	4.675e^-5	0.273	INTRON Six4
2R	3130590	2R_3130590_SNP [dm3] 2R_7243085_SNP [dm6]	C	T	4.678e^-5	0.273	UTR_3_PRIME Ady43A
3R	24477979	3R_24477979_SNP [dm3] 3R_28652257_SNP [dm6]	G	T	4.692e^-5	0.273	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12328009	2L_12328009_SNP [dm3] 2L_12328009_SNP [dm6]	T	C	4.708e^-5	0.273	INTERGENIC
2L	5878569	2L_5878569_SNP [dm3] 2L_5878569_SNP [dm6]	A	T	4.737e^-5	0.273	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3527339	2L_3527339_SNP [dm3] 2L_3527339_SNP [dm6]	G	A	4.768e^-5	0.273	UTR_3_PRIME CG8852 DOWNSTREAM Spindly
3R	27007482	3R_27007482_SNP [dm3] 3R_31181760_SNP [dm6]	G	A	4.782e^-5	0.273	INTRON mesh	TF binding site mE1_TFBS_cad
3L	7863650	3L_7863650_SNP [dm3] 3L_7870550_SNP [dm6]	C	T	4.795e^-5	0.273	INTRON CG32365
2L	10721027	2L_10721027_SNP [dm3] 2L_10721027_SNP [dm6]	C	T	4.811e^-5	0.273	INTERGENIC
X	19997665	X_19997665_SNP [dm3] X_20103632_SNP [dm6]	G	T	4.855e^-5	0.273	INTERGENIC
2L	5262726	2L_5262726_SNP [dm3] 2L_5262726_SNP [dm6]	A	G	4.901e^-5	0.273	INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12247277	X_12247277_SNP [dm3] X_12353244_SNP [dm6]	C	T	4.901e^-5	0.273	INTERGENIC
2L	20095550	2L_20095550_SNP [dm3] 2L_20095550_SNP [dm6]	G	C	4.902e^-5	0.273	NON_SYNONYMOUS_CODING nesd DOWNSTREAM mRpS18B	TF binding site mE1_TFBS_sens
3L	7864291	3L_7864291_SNP [dm3] 3L_7871191_SNP [dm6]	T	C	4.904e^-5	0.273	INTRON CG32365
2L	3960986	2L_3960986_SNP [dm3] 2L_3960986_SNP [dm6]	A	G	4.913e^-5	0.273	INTRON fred
X	16613801	X_16613801_SNP [dm3] X_16719768_SNP [dm6]	G	A	4.943e^-5	0.273	INTRON CG34325
X	18065370	X_18065370_SNP [dm3] X_18171337_SNP [dm6]	G	A	4.959e^-5	0.273	UTR_3_PRIME Frq1
2L	3546346	2L_3546346_SNP [dm3] 2L_3546346_SNP [dm6]	A	G	4.967e^-5	0.273	INTRON drm	TF binding site BDTNP1_TFBS_dl
2L	1040342	2L_1040342_SNP [dm3] 2L_1040342_SNP [dm6]	T	C	4.996e^-5	0.273	INTRON IA-2	TF binding site mE1_TFBS_chinmo
2L	18432475	2L_18432475_SNP [dm3] 2L_18432475_SNP [dm6]	C	T	5.008e^-5	0.273	UPSTREAM CR44488 INTERGENIC
2L	1298962	2L_1298962_SNP [dm3] 2L_1298962_SNP [dm6]	G	A	5.016e^-5	0.273	INTERGENIC
3R	1238438	3R_1238438_SNP [dm3] 3R_5412716_SNP [dm6]	A	G	5.026e^-5	0.273	UPSTREAM Orco INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9396708	2L_9396708_SNP [dm3] 2L_9396708_SNP [dm6]	C	T	5.034e^-5	0.273	DOWNSTREAM CG4438 INTRON Shawl
X	19903952	X_19903952_DEL [dm3] X_20009919_DEL [dm6]	TTGCAAGT	T	5.041e^-5	0.273	INTRON Dop2R
2L	21875555	2L_21875555_SNP [dm3] 2L_21875555_SNP [dm6]	T	A	5.050e^-5	0.273	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5609677	2L_5609677_SNP [dm3] 2L_5609677_SNP [dm6]	C	T	5.050e^-5	0.273	INTRON CG14010
3L	10132021	3L_10132021_SNP [dm3] 3L_10138921_SNP [dm6]	T	C	5.077e^-5	0.273	UTR_3_PRIME dpr6
3R	23124771	3R_23124771_SNP [dm3] 3R_27299049_SNP [dm6]	C	A	5.088e^-5	0.273	INTRON CG3339
2L	3229957	2L_3229957_SNP [dm3] 2L_3229957_SNP [dm6]	T	C	5.091e^-5	0.273	INTERGENIC
2L	15976991	2L_15976991_SNP [dm3] 2L_15976991_SNP [dm6]	G	C	5.107e^-5	0.273	INTERGENIC
3R	27007471	3R_27007471_INS [dm3] 3R_31181749_INS [dm6]	T	TTGTA	5.110e^-5	0.273	INTRON mesh	TF binding site mE1_TFBS_cad
2L	994688	2L_994688_SNP [dm3] 2L_994688_SNP [dm6]	G	T	5.124e^-5	0.273	INTERGENIC
X	13426439	X_13426439_SNP [dm3] X_13532406_SNP [dm6]	C	A	5.144e^-5	0.273	INTERGENIC
3L	2840501	3L_2840501_SNP [dm3] 3L_2840501_SNP [dm6]	A	G	5.148e^-5	0.273	INTRON CG43444
2L	8149196	2L_8149196_SNP [dm3] 2L_8149196_SNP [dm6]	A	T	5.184e^-5	0.273	UTR_5_PRIME CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19397244	2R_19397244_SNP [dm3] 2R_23509721_SNP [dm6]	A	G	5.223e^-5	0.273	INTERGENIC
2L	2658404	2L_2658404_SNP [dm3] 2L_2658404_SNP [dm6]	G	A	5.225e^-5	0.273	INTERGENIC
2L	20084560	2L_20084560_SNP [dm3] 2L_20084560_SNP [dm6]	T	C	5.227e^-5	0.273	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20084562	2L_20084562_SNP [dm3] 2L_20084562_SNP [dm6]	T	A	5.227e^-5	0.273	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20084565	2L_20084565_SNP [dm3] 2L_20084565_SNP [dm6]	C	T	5.227e^-5	0.273	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12235675	2L_12235675_SNP [dm3] 2L_12235675_SNP [dm6]	C	A	5.246e^-5	0.273	INTRON aret
2L	21747861	2L_21747861_SNP [dm3] 2L_21747861_SNP [dm6]	C	T	5.256e^-5	0.273	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16568912	3R_16568912_SNP [dm3] 3R_20743190_SNP [dm6]	G	A	5.279e^-5	0.273	SYNONYMOUS_CODING CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11870095	2L_11870095_SNP [dm3] 2L_11870095_SNP [dm6]	G	A	5.285e^-5	0.273	INTRON Pde1c
2L	21756747	2L_21756747_SNP [dm3] 2L_21756747_SNP [dm6]	C	A	5.302e^-5	0.273	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
2L	12297009	2L_12297009_SNP [dm3] 2L_12297009_SNP [dm6]	A	C	5.312e^-5	0.273	INTRON aret
2L	14753035	2L_14753035_SNP [dm3] 2L_14753035_SNP [dm6]	A	C	5.329e^-5	0.273	INTERGENIC
2R	18855595	2R_18855595_SNP [dm3] 2R_22968072_SNP [dm6]	T	G	5.348e^-5	0.273	INTERGENIC
2L	21862436	2L_21862436_SNP [dm3] 2L_21862436_SNP [dm6]	T	A	5.364e^-5	0.273	INTRON CR44917
2L	20084564	2L_20084564_SNP [dm3] 2L_20084564_SNP [dm6]	T	C	5.416e^-5	0.275	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23947282	3R_23947282_SNP [dm3] 3R_28121560_SNP [dm6]	G	A	5.431e^-5	0.275	INTERGENIC
X	4296041	X_4296041_SNP [dm3] X_4402008_SNP [dm6]	C	G	5.437e^-5	0.275	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	252204	2L_252204_SNP [dm3] 2L_252204_SNP [dm6]	T	C	5.469e^-5	0.276	DOWNSTREAM CG3645 INTRON Rpp30	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6571326	2R_6571326_DEL [dm3] 2R_10683821_DEL [dm6]	CAC	C	5.497e^-5	0.276	INTRON stan
3L	12444891	3L_12444891_SNP [dm3] 3L_12451791_SNP [dm6]	C	T	5.522e^-5	0.277	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15341435	2L_15341435_SNP [dm3] 2L_15341435_SNP [dm6]	A	G	5.579e^-5	0.277	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9011459	2L_9011459_SNP [dm3] 2L_9011459_SNP [dm6]	G	A	5.584e^-5	0.277	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	12638673	3L_12638673_SNP [dm3] 3L_12645573_SNP [dm6]	T	G	5.595e^-5	0.277	EXON CR32111
X	6214717	X_6214717_SNP [dm3] X_6320684_SNP [dm6]	G	A	5.603e^-5	0.277	NON_SYNONYMOUS_CODING CG15894
3L	17612801	3L_17612801_SNP [dm3] 3L_17619701_SNP [dm6]	C	T	5.622e^-5	0.277	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	9584890	X_9584890_SNP [dm3] X_9690857_SNP [dm6]	C	A	5.623e^-5	0.277	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2840335	3L_2840335_SNP [dm3] 3L_2840335_SNP [dm6]	C	T	5.624e^-5	0.277	INTRON CG43444
3R	20608213	3R_20608213_SNP [dm3] 3R_24782491_SNP [dm6]	T	G	5.650e^-5	0.277	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
3L	10245755	3L_10245755_SNP [dm3] 3L_10252655_SNP [dm6]	A	G	5.680e^-5	0.278	INTERGENIC
X	12186137	X_12186137_SNP [dm3] X_12292104_SNP [dm6]	C	A	5.714e^-5	0.279	INTRON Ten-a
2L	17890071	2L_17890071_SNP [dm3] 2L_17890071_SNP [dm6]	A	G	5.747e^-5	0.279	INTERGENIC
2L	17015515	2L_17015515_SNP [dm3] 2L_17015515_SNP [dm6]	T	G	5.758e^-5	0.279	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	2873038	2L_2873038_DEL [dm3] 2L_2873038_DEL [dm6]	ATGGTTATAT	A	5.759e^-5	0.279	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	22062800	2L_22062800_SNP [dm3] 2L_22062800_SNP [dm6]	G	T	5.774e^-5	0.279	INTERGENIC	transposable element FlyBase
2L	5392050	2L_5392050_SNP [dm3] 2L_5392050_SNP [dm6]	T	C	5.834e^-5	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	16613414	X_16613414_SNP [dm3] X_16719381_SNP [dm6]	T	G	5.890e^-5	0.28	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	7439082	X_7439082_SNP [dm3] X_7545049_SNP [dm6]	G	A	5.895e^-5	0.28	INTRON CG32719
2L	3165703	2L_3165703_SNP [dm3] 2L_3165703_SNP [dm6]	T	G	5.898e^-5	0.28	INTRON Hydr2	TF binding site BDTNP1_TFBS_da
2L	13948171	2L_13948171_SNP [dm3] 2L_13948171_SNP [dm6]	A	T	5.899e^-5	0.28	UPSTREAM CG16884 INTRON Ance-3
2L	4342130	2L_4342130_SNP [dm3] 2L_4342130_SNP [dm6]	G	A	5.900e^-5	0.28	SYNONYMOUS_CODING Atet
3L	9304144	3L_9304144_SNP [dm3] 3L_9311044_SNP [dm6]	A	C	5.902e^-5	0.28	INTERGENIC
2L	13622666	2L_13622666_SNP [dm3] 2L_13622666_SNP [dm6]	T	C	5.931e^-5	0.28	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8222947	2L_8222947_SNP [dm3] 2L_8222947_SNP [dm6]	A	T	5.937e^-5	0.28	SYNONYMOUS_CODING Pvr
2L	3725386	2L_3725386_SNP [dm3] 2L_3725386_SNP [dm6]	C	A	5.945e^-5	0.28	INTRON Shaw
3R	5145301	3R_5145301_SNP [dm3] 3R_9319579_SNP [dm6]	T	G	5.952e^-5	0.28	INTRON CG8861
2L	4319222	2L_4319222_SNP [dm3] 2L_4319222_SNP [dm6]	C	T	5.992e^-5	0.28	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
3L	8877544	3L_8877544_SNP [dm3] 3L_8884444_SNP [dm6]	T	C	5.996e^-5	0.28	INTRON dally
2L	16448697	2L_16448697_SNP [dm3] 2L_16448697_SNP [dm6]	T	A	6.011e^-5	0.28	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	7363621	2L_7363621_SNP [dm3] 2L_7363621_SNP [dm6]	C	A	6.020e^-5	0.28	UTR_5_PRIME Wnt10
2L	16835887	2L_16835887_SNP [dm3] 2L_16835887_SNP [dm6]	G	A	6.026e^-5	0.28	SYNONYMOUS_CODING CG13283	TF binding site mE1_TFBS_sens
3R	20429175	3R_20429175_SNP [dm3] 3R_24603453_SNP [dm6]	G	A	6.055e^-5	0.28	INTRON mld	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3294675	2L_3294675_SNP [dm3] 2L_3294675_SNP [dm6]	A	G	6.076e^-5	0.28	UTR_5_PRIME CG9664 DOWNSTREAM CG9663
2L	16132615	2L_16132615_SNP [dm3] 2L_16132615_SNP [dm6]	C	A	6.089e^-5	0.28	UPSTREAM CG4892 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9336606	3L_9336606_SNP [dm3] 3L_9343506_SNP [dm6]	C	T	6.090e^-5	0.28	UPSTREAM PGRP-LC INTRON PGRP-LC
X	18065402	X_18065402_SNP [dm3] X_18171369_SNP [dm6]	A	G	6.108e^-5	0.28	UTR_3_PRIME Frq1
3R	18636355	3R_18636355_SNP [dm3] 3R_22810633_SNP [dm6]	T	G	6.158e^-5	0.28	INTERGENIC
2L	4319266	2L_4319266_SNP [dm3] 2L_4319266_SNP [dm6]	C	T	6.159e^-5	0.28	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
2L	1149604	2L_1149604_SNP [dm3] 2L_1149604_SNP [dm6]	G	A	6.164e^-5	0.28	DOWNSTREAM CG4749 INTRON Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15663649	3L_15663649_SNP [dm3] 3L_15670549_SNP [dm6]	T	A	6.175e^-5	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3R	13850445	3R_13850445_SNP [dm3] 3R_18024723_SNP [dm6]	C	A	6.183e^-5	0.28	SYNONYMOUS_CODING CG7794	TF binding site mE1_TFBS_cad
2L	4319245	2L_4319245_SNP [dm3] 2L_4319245_SNP [dm6]	C	T	6.222e^-5	0.281	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
3L	482613	3L_482613_SNP [dm3] 3L_482613_SNP [dm6]	A	G	6.251e^-5	0.282	INTRON klar
2R	17663904	2R_17663904_SNP [dm3] 2R_21776399_SNP [dm6]	G	A	6.324e^-5	0.284	INTERGENIC
2L	20084530	2L_20084530_SNP [dm3] 2L_20084530_SNP [dm6]	T	C	6.343e^-5	0.284	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4830538	2L_4830538_SNP [dm3] 2L_4830538_SNP [dm6]	C	T	6.364e^-5	0.284	NON_SYNONYMOUS_CODING CG2976 UPSTREAM mir-4912 DOWNSTREAM Ir25a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	4325578	2L_4325578_SNP [dm3] 2L_4325578_SNP [dm6]	C	T	6.382e^-5	0.284	INTRON CG16857
3R	24404654	3R_24404654_SNP [dm3] 3R_28578932_SNP [dm6]	G	C	6.383e^-5	0.284	INTERGENIC	regulatory region REDfly_CRMs
2L	4319286	2L_4319286_SNP [dm3] 2L_4319286_SNP [dm6]	T	A	6.411e^-5	0.285	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
2L	3647026	2L_3647026_SNP [dm3] 2L_3647026_SNP [dm6]	C	T	6.430e^-5	0.285	UPSTREAM for INTRON for
X	6944585	X_6944585_SNP [dm3] X_7050552_SNP [dm6]	G	C	6.437e^-5	0.285	DOWNSTREAM nullo INTRON CG12541
2L	4319246	2L_4319246_SNP [dm3] 2L_4319246_SNP [dm6]	A	T	6.463e^-5	0.285	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
2L	5026634	2L_5026634_SNP [dm3] 2L_5026634_SNP [dm6]	C	T	6.466e^-5	0.285	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18287192	2R_18287192_SNP [dm3] 2R_22399687_SNP [dm6]	C	T	6.496e^-5	0.285	INTRON babos	TF binding site BDTNP1_TFBS_dl
2L	13622656	2L_13622656_SNP [dm3] 2L_13622656_SNP [dm6]	T	A	6.502e^-5	0.285	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15903311	2L_15903311_SNP [dm3] 2L_15903311_SNP [dm6]	T	A	6.629e^-5	0.288	UPSTREAM CG31821 INTERGENIC
3L	8878949	3L_8878949_DEL [dm3] 3L_8885849_DEL [dm6]	AGCCTTATTAAAG...	A	6.640e^-5	0.288	INTRON dally
2R	3069476	2R_3069476_SNP [dm3] 2R_7181971_SNP [dm6]	A	G	6.659e^-5	0.288	SYNONYMOUS_CODING CG30385 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9346364	3L_9346364_SNP [dm3] 3L_9353264_SNP [dm6]	C	T	6.661e^-5	0.288	UPSTREAM CG32040 INTRON UGP
2L	3546618	2L_3546618_INS [dm3] 2L_3546618_INS [dm6]	T	TAT	6.673e^-5	0.288	INTRON drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8487469	3L_8487469_SNP [dm3] 3L_8494369_SNP [dm6]	G	A	6.704e^-5	0.288	INTRON CG43163
2L	11786385	2L_11786385_SNP [dm3] 2L_11786385_SNP [dm6]	C	T	6.712e^-5	0.288	INTERGENIC
3L	4366421	3L_4366421_SNP [dm3] 3L_4366421_SNP [dm6]	C	A	6.718e^-5	0.288	SYNONYMOUS_CODING CG33514 DOWNSTREAM CG11342	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11407884	2L_11407884_SNP [dm3] 2L_11407884_SNP [dm6]	A	G	6.728e^-5	0.288	INTERGENIC	regulatory region REDfly_CRMs
2L	2587868	2L_2587868_DEL [dm3] 2L_2587868_DEL [dm6]	TTGCCCCTTTGCAATTCCCG...	T	6.737e^-5	0.288	INTERGENIC
2L	2111040	2L_2111040_SNP [dm3] 2L_2111040_SNP [dm6]	A	C	6.746e^-5	0.288	INTERGENIC
2L	2098885	2L_2098885_SNP [dm3] 2L_2098885_SNP [dm6]	A	G	6.766e^-5	0.288	INTRON dpr3
2L	9588155	2L_9588155_SNP [dm3] 2L_9588155_SNP [dm6]	A	G	6.805e^-5	0.288	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6238746	2L_6238746_SNP [dm3] 2L_6238746_SNP [dm6]	C	A	6.823e^-5	0.288	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	1263161	2L_1263161_SNP [dm3] 2L_1263161_SNP [dm6]	T	C	6.823e^-5	0.288	INTRON robo3
3L	9565402	3L_9565402_INS [dm3] 3L_9572302_INS [dm6]	T	TC	6.866e^-5	0.288	INTRON CG42673
2L	821864	2L_821864_SNP [dm3] 2L_821864_SNP [dm6]	C	A	6.867e^-5	0.288	UTR_5_PRIME CG3662 DOWNSTREAM Clp INTRON CG3662	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	3812901	2R_3812901_SNP [dm3] 2R_7925396_SNP [dm6]	C	T	6.883e^-5	0.288	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	10420289	3R_10420289_SNP [dm3] 3R_14594567_SNP [dm6]	A	T	6.889e^-5	0.288	INTRON stumps	regulatory region REDfly_CRMs
4	1243673	4_1243673_SNP [dm3] 4_1239947_SNP [dm6]	C	A	6.894e^-5	0.288	INTRON Caps	transposable element FlyBase
2L	20254759	2L_20254759_SNP [dm3] 2L_20254759_SNP [dm6]	G	T	6.918e^-5	0.288	UPSTREAM CR40465 INTERGENIC
2L	3993723	2L_3993723_SNP [dm3] 2L_3993723_SNP [dm6]	C	T	6.926e^-5	0.288	INTERGENIC
2R	9962263	2R_9962263_SNP [dm3] 2R_14074758_SNP [dm6]	A	G	6.958e^-5	0.288	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	12247251	X_12247251_SNP [dm3] X_12353218_SNP [dm6]	A	G	6.969e^-5	0.288	INTERGENIC
X	12247253	X_12247253_SNP [dm3] X_12353220_SNP [dm6]	G	A	6.969e^-5	0.288	INTERGENIC
X	3217047	X_3217047_INS [dm3] X_3323014_INS [dm6]	A	AA	6.989e^-5	0.288	INTRON CR44886 & 1 other
2R	3812911	2R_3812911_SNP [dm3] 2R_7925406_SNP [dm6]	T	A	6.995e^-5	0.288	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12637677	3L_12637677_SNP [dm3] 3L_12644577_SNP [dm6]	T	G	7.037e^-5	0.289	INTRON CR32111	regulatory region REDfly_CRMs
2L	3563440	2L_3563440_SNP [dm3] 2L_3563440_SNP [dm6]	C	T	7.099e^-5	0.29	DOWNSTREAM CR44309 EXON CR44747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9138663	2R_9138663_SNP [dm3] 2R_13251158_SNP [dm6]	G	C	7.101e^-5	0.29	SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
3R	20429162	3R_20429162_SNP [dm3] 3R_24603440_SNP [dm6]	T	C	7.133e^-5	0.29	INTRON mld	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8487410	3L_8487410_SNP [dm3] 3L_8494310_SNP [dm6]	A	C	7.134e^-5	0.29	SPLICE_SITE_REGION CG43163 UTR_5_PRIME CG43163
3R	22625406	3R_22625406_SNP [dm3] 3R_26799684_SNP [dm6]	G	C	7.157e^-5	0.29	INTRON Tl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	9998788	3L_9998788_SNP [dm3] 3L_10005688_SNP [dm6]	A	G	7.196e^-5	0.29	INTRON dpr6
2L	21822035	2L_21822035_DEL [dm3] 2L_21822035_DEL [dm6]	CT	C	7.197e^-5	0.29	EXON CR44786
2R	9141788	2R_9141788_SNP [dm3] 2R_13254283_SNP [dm6]	A	T	7.199e^-5	0.29	UTR_5_PRIME CG4714 DOWNSTREAM CR44343	TF binding site mE1_TFBS_cad
2L	15139025	2L_15139025_DEL [dm3] 2L_15139025_DEL [dm6]	CTCATAATGATG...	C	7.205e^-5	0.29	INTERGENIC
X	12186139	X_12186139_DEL [dm3] X_12292106_DEL [dm6]	GG	G	7.216e^-5	0.29	INTRON Ten-a
2L	11882007	2L_11882007_SNP [dm3] 2L_11882007_SNP [dm6]	T	A	7.228e^-5	0.29	INTRON Pde1c
2L	9199408	2L_9199408_SNP [dm3] 2L_9199408_SNP [dm6]	C	T	7.245e^-5	0.29	INTRON tai
2L	21849181	2L_21849181_SNP [dm3] 2L_21849181_SNP [dm6]	T	A	7.267e^-5	0.291	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18432419	2L_18432419_SNP [dm3] 2L_18432419_SNP [dm6]	G	A	7.313e^-5	0.291	INTERGENIC
3R	22625418	3R_22625418_SNP [dm3] 3R_26799696_SNP [dm6]	C	T	7.316e^-5	0.291	INTRON Tl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	18660049	2L_18660049_SNP [dm3] 2L_18660049_SNP [dm6]	A	C	7.333e^-5	0.291	INTRON MESR3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12293440	3R_12293440_SNP [dm3] 3R_16467718_SNP [dm6]	A	C	7.369e^-5	0.292	SYNONYMOUS_CODING CG42232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	4577936	2R_4577936_SNP [dm3] 2R_8690431_SNP [dm6]	G	T	7.376e^-5	0.292	INTERGENIC
2L	492723	2L_492723_SNP [dm3] 2L_492723_SNP [dm6]	G	A	7.453e^-5	0.293	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20322540	2L_20322540_SNP [dm3] 2L_20322540_SNP [dm6]	C	T	7.481e^-5	0.293	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7116122	3R_7116122_SNP [dm3] 3R_11290400_SNP [dm6]	G	A	7.502e^-5	0.293	INTRON CR31386
2L	20099103	2L_20099103_SNP [dm3] 2L_20099103_SNP [dm6]	G	T	7.516e^-5	0.293	UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
2L	4862752	2L_4862752_SNP [dm3] 2L_4862752_SNP [dm6]	C	T	7.565e^-5	0.293	INTRON pog
3R	13652649	3R_13652649_SNP [dm3] 3R_17826927_SNP [dm6]	G	C	7.575e^-5	0.293	INTRON tinc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9374027	X_9374027_DEL [dm3] X_9479994_DEL [dm6]	AGCCAAAGCCAAA...	A	7.577e^-5	0.293	INTRON mgl
2R	2876729	2R_2876729_SNP [dm3] 2R_6989224_SNP [dm6]	A	T	7.585e^-5	0.293	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
3L	12638672	3L_12638672_SNP [dm3] 3L_12645572_SNP [dm6]	T	A	7.595e^-5	0.293	EXON CR32111
3R	26140377	3R_26140377_SNP [dm3] 3R_30314655_SNP [dm6]	A	C	7.607e^-5	0.293	INTRON hdc
2L	11615577	2L_11615577_SNP [dm3] 2L_11615577_SNP [dm6]	G	C	7.657e^-5	0.293	INTRON kek2
2L	9588166	2L_9588166_SNP [dm3] 2L_9588166_SNP [dm6]	A	G	7.667e^-5	0.293	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1006671	2L_1006671_SNP [dm3] 2L_1006671_SNP [dm6]	C	T	7.688e^-5	0.293	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	1149599	2L_1149599_SNP [dm3] 2L_1149599_SNP [dm6]	G	A	7.724e^-5	0.293	DOWNSTREAM CG4749 INTRON Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19243541	3R_19243541_SNP [dm3] 3R_23417819_SNP [dm6]	G	A	7.746e^-5	0.293	INTRON CG4374	TF binding site mE1_TFBS_chinmo
X	8183037	X_8183037_SNP [dm3] X_8289004_SNP [dm6]	A	C	7.772e^-5	0.293	INTRON nAChRalpha3
2L	6842114	2L_6842114_SNP [dm3] 2L_6842114_SNP [dm6]	A	T	7.781e^-5	0.293	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1494295	2L_1494295_SNP [dm3] 2L_1494295_SNP [dm6]	G	A	7.783e^-5	0.293	SYNONYMOUS_CODING CG33128 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3589125	2L_3589125_SNP [dm3] 2L_3589125_SNP [dm6]	C	G	7.800e^-5	0.293	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	3049988	2L_3049988_SNP [dm3] 2L_3049988_SNP [dm6]	C	G	7.801e^-5	0.293	NON_SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12315977	2R_12315977_SNP [dm3] 2R_16428472_SNP [dm6]	T	C	7.804e^-5	0.293	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi
2R	9137485	2R_9137485_SNP [dm3] 2R_13249980_SNP [dm6]	A	C	7.805e^-5	0.293	INTRON CG4712
2L	3628985	2L_3628985_SNP [dm3] 2L_3628985_SNP [dm6]	G	A	7.808e^-5	0.293	INTRON for	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18432386	2L_18432386_SNP [dm3] 2L_18432386_SNP [dm6]	A	G	7.826e^-5	0.293	INTERGENIC
2L	231328	2L_231328_SNP [dm3] 2L_231328_SNP [dm6]	T	A	7.827e^-5	0.293	DOWNSTREAM snoRNA:kis-a INTRON kis
2L	20084487	2L_20084487_SNP [dm3] 2L_20084487_SNP [dm6]	C	A	7.834e^-5	0.293	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13653419	3R_13653419_SNP [dm3] 3R_17827697_SNP [dm6]	A	G	7.841e^-5	0.293	INTRON tinc	TF binding site mE1_TFBS_cad
3L	12743488	3L_12743488_DEL [dm3] 3L_12750388_DEL [dm6]	TAAAGGTG	T	7.853e^-5	0.293	UPSTREAM CG10984 & 1 other INTRON CG10984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	6909680	2L_6909680_SNP [dm3] 2L_6909680_SNP [dm6]	C	T	7.888e^-5	0.294	SYNONYMOUS_CODING Rat1	TF binding site mE1_TFBS_sens
3L	10066439	3L_10066439_SNP [dm3] 3L_10073339_SNP [dm6]	A	C	7.904e^-5	0.294	INTRON dpr6
X	6944586	X_6944586_SNP [dm3] X_7050553_SNP [dm6]	C	G	7.968e^-5	0.296	DOWNSTREAM nullo INTRON CG12541
2L	18376210	2L_18376210_SNP [dm3] 2L_18376210_SNP [dm6]	C	T	7.986e^-5	0.296	INTRON Fas3
2L	3276239	2L_3276239_SNP [dm3] 2L_3276239_SNP [dm6]	G	A	8.017e^-5	0.297	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5195632	2L_5195632_SNP [dm3] 2L_5195632_SNP [dm6]	C	A	8.036e^-5	0.297	UPSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9035096	3L_9035096_SNP [dm3] 3L_9041996_SNP [dm6]	A	G	8.074e^-5	0.297	INTRON Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4831614	2L_4831614_SNP [dm3] 2L_4831614_SNP [dm6]	G	A	8.093e^-5	0.297	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10503050	3L_10503050_SNP [dm3] 3L_10509950_SNP [dm6]	T	C	8.121e^-5	0.297	INTRON A2bp1
3L	11657996	3L_11657996_SNP [dm3] 3L_11664896_SNP [dm6]	C	T	8.178e^-5	0.297	INTRON CG32085
3L	8454406	3L_8454406_SNP [dm3] 3L_8461306_SNP [dm6]	A	G	8.179e^-5	0.297	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25614470	3R_25614470_SNP [dm3] 3R_29788748_SNP [dm6]	C	A	8.180e^-5	0.297	UPSTREAM kay INTRON kay
2L	15505492	2L_15505492_SNP [dm3] 2L_15505492_SNP [dm6]	C	A	8.197e^-5	0.297	DOWNSTREAM lace INTERGENIC
2R	5487094	2R_5487094_SNP [dm3] 2R_9599589_SNP [dm6]	A	G	8.205e^-5	0.297	SYNONYMOUS_CODING clos DOWNSTREAM CG30340 & 1 other INTRON CG1902
2L	11391595	2L_11391595_SNP [dm3] 2L_11391595_SNP [dm6]	C	T	8.219e^-5	0.297	INTRON CR43681	regulatory region REDfly_CRMs
2R	5791824	2R_5791824_SNP [dm3] 2R_9904319_SNP [dm6]	A	C	8.225e^-5	0.297	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	7288567	3L_7288567_SNP [dm3] 3L_7295467_SNP [dm6]	G	A	8.231e^-5	0.297	INTRON unc-13-4A
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	8.233e^-5	0.297	DOWNSTREAM CG31910 INTRON CG11221
3L	12638413	3L_12638413_SNP [dm3] 3L_12645313_SNP [dm6]	G	A	8.270e^-5	0.298	SPLICE_SITE_REGION CR32111 INTRON CR32111
2L	11943824	2L_11943824_SNP [dm3] 2L_11943824_SNP [dm6]	A	C	8.294e^-5	0.298	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2L	9555459	2L_9555459_SNP [dm3] 2L_9555459_SNP [dm6]	T	G	8.315e^-5	0.298	SYNONYMOUS_CODING jp
2L	5185142	2L_5185142_SNP [dm3] 2L_5185142_SNP [dm6]	C	T	8.358e^-5	0.298	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19651508	3R_19651508_SNP [dm3] 3R_23825786_SNP [dm6]	C	T	8.359e^-5	0.298	UPSTREAM snRNA:U1:95Cc INTRON CG34355 EXON CR43285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	3130158	2R_3130158_SNP [dm3] 2R_7242653_SNP [dm6]	G	T	8.370e^-5	0.298	DOWNSTREAM Ady43A INTERGENIC
2R	11873836	2R_11873836_SNP [dm3] 2R_15986331_SNP [dm6]	C	T	8.397e^-5	0.298	INTRON Strn-Mlck
3L	10015536	3L_10015536_SNP [dm3] 3L_10022436_SNP [dm6]	G	C	8.419e^-5	0.298	INTRON dpr6
2L	18583008	2L_18583008_SNP [dm3] 2L_18583008_SNP [dm6]	A	T	8.443e^-5	0.298	INTRON Pde11	transposable element FlyBase
2L	3604178	2L_3604178_SNP [dm3] 2L_3604178_SNP [dm6]	G	A	8.469e^-5	0.298	DOWNSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	13059654	2R_13059654_SNP [dm3] 2R_17172149_SNP [dm6]	T	A	8.470e^-5	0.298	INTERGENIC
X	18064714	X_18064714_DEL [dm3] X_18170681_DEL [dm6]	AC	A	8.471e^-5	0.298	UTR_3_PRIME Frq1
3L	23657333	3L_23657333_DEL [dm3] 3L_23664233_DEL [dm6]	TGGGCTTT	T	8.480e^-5	0.298	INTRON AGO3	transposable element FlyBase
2L	1969669	2L_1969669_DEL [dm3] 2L_1969669_DEL [dm6]	TCTTATT	T	8.537e^-5	0.3	INTRON erm	TF binding site BDTNP1_TFBS_dl
2L	19764495	2L_19764495_SNP [dm3] 2L_19764495_SNP [dm6]	C	A	8.577e^-5	0.3	UPSTREAM fbp INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1685906	3L_1685906_SNP [dm3] 3L_1685906_SNP [dm6]	C	A	8.578e^-5	0.3	INTRON CG7991
2L	3731665	2L_3731665_SNP [dm3] 2L_3731665_SNP [dm6]	T	G	8.641e^-5	0.302	INTRON CG10019
2L	3635643	2L_3635643_SNP [dm3] 2L_3635643_SNP [dm6]	G	T	8.662e^-5	0.302	INTRON for
2L	9851844	2L_9851844_SNP [dm3] 2L_9851844_SNP [dm6]	T	A	8.682e^-5	0.302	INTRON nAChRalpha6
X	7439002	X_7439002_SNP [dm3] X_7544969_SNP [dm6]	T	G	8.721e^-5	0.303	INTRON CG32719	TF binding site mE1_TFBS_Trl
2L	13466591	2L_13466591_SNP [dm3] 2L_13466591_SNP [dm6]	G	A	8.788e^-5	0.303	INTRON CG42784
2R	18512348	2R_18512348_SNP [dm3] 2R_22624843_SNP [dm6]	A	C	8.792e^-5	0.303	INTRON CG33143
2L	4009710	2L_4009710_SNP [dm3] 2L_4009710_SNP [dm6]	C	G	8.807e^-5	0.303	DOWNSTREAM CG43774 INTERGENIC
2L	17079303	2L_17079303_SNP [dm3] 2L_17079303_SNP [dm6]	G	A	8.834e^-5	0.303	INTERGENIC
X	22239891	X_22239891_DEL [dm3] X_22838055_DEL [dm6]	AAT	A	8.843e^-5	0.303	INTRON fog & 1 other	transposable element FlyBase
2L	1298930	2L_1298930_SNP [dm3] 2L_1298930_SNP [dm6]	A	G	8.847e^-5	0.303	INTERGENIC
2R	3092953	2R_3092953_SNP [dm3] 2R_7205448_SNP [dm6]	G	A	8.870e^-5	0.303	INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9142188	2R_9142188_SNP [dm3] 2R_13254683_SNP [dm6]	G	A	8.877e^-5	0.303	UPSTREAM CG4714 EXON CR44343
3R	9295709	3R_9295709_SNP [dm3] 3R_13469987_SNP [dm6]	A	T	8.883e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	970690	3L_970690_SNP [dm3] 3L_970690_SNP [dm6]	G	A	8.887e^-5	0.303	INTRON Glut1
3L	2805171	3L_2805171_SNP [dm3] 3L_2805171_SNP [dm6]	C	A	8.910e^-5	0.303	INTRON CG43444
2L	17015521	2L_17015521_SNP [dm3] 2L_17015521_SNP [dm6]	T	A	8.933e^-5	0.303	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	9851852	2L_9851852_SNP [dm3] 2L_9851852_SNP [dm6]	A	T	8.990e^-5	0.303	INTRON nAChRalpha6
2R	8536076	2R_8536076_DEL [dm3] 2R_12648571_DEL [dm6]	GTGGAGGAGG	G	9.004e^-5	0.303	UPSTREAM CG8785 INTERGENIC
2L	12722603	2L_12722603_SNP [dm3] 2L_12722603_SNP [dm6]	C	G	9.022e^-5	0.303	SYNONYMOUS_CODING MRP UPSTREAM CG5792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21872682	2L_21872682_SNP [dm3] 2L_21872682_SNP [dm6]	T	C	9.027e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16562493	2L_16562493_SNP [dm3] 2L_16562493_SNP [dm6]	T	A	9.061e^-5	0.303	INTRON CG42389
2R	4200078	2R_4200078_DEL [dm3] 2R_8312573_DEL [dm6]	CTCTT	AA	9.066e^-5	0.303	DOWNSTREAM CR44450 INTERGENIC
X	8449016	X_8449016_DEL [dm3] X_8554983_DEL [dm6]	TT	T	9.102e^-5	0.303	UTR_3_PRIME Nrg DOWNSTREAM IntS4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	2805172	3L_2805172_SNP [dm3] 3L_2805172_SNP [dm6]	C	A	9.118e^-5	0.303	INTRON CG43444
2L	6339752	2L_6339752_SNP [dm3] 2L_6339752_SNP [dm6]	T	A	9.119e^-5	0.303	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	11624083	2L_11624083_SNP [dm3] 2L_11624083_SNP [dm6]	A	G	9.140e^-5	0.303	SYNONYMOUS_CODING kek2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	10328772	X_10328772_SNP [dm3] X_10434739_SNP [dm6]	A	C	9.141e^-5	0.303	INTRON CG32683
2L	1622515	2L_1622515_SNP [dm3] 2L_1622515_SNP [dm6]	G	A	9.143e^-5	0.303	EXON CR44603
3L	12638658	3L_12638658_SNP [dm3] 3L_12645558_SNP [dm6]	A	G	9.185e^-5	0.303	EXON CR32111
2L	15523613	2L_15523613_SNP [dm3] 2L_15523613_SNP [dm6]	A	T	9.200e^-5	0.303	EXON CR43761
2R	7728131	2R_7728131_INS [dm3] 2R_11840626_INS [dm6]	T	TG	9.205e^-5	0.303	UPSTREAM Sobp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9335144	3L_9335144_DEL [dm3] 3L_9342044_DEL [dm6]	TTAA	T	9.217e^-5	0.303	INTRON PGRP-LC	TF binding site mE1_TFBS_cad
3L	9337997	3L_9337997_SNP [dm3] 3L_9344897_SNP [dm6]	C	T	9.225e^-5	0.303	SPLICE_SITE_REGION PGRP-LC INTRON PGRP-LC
2L	5688054	2L_5688054_SNP [dm3] 2L_5688054_SNP [dm6]	A	T	9.229e^-5	0.303	INTERGENIC
3L	9340688	3L_9340688_SNP [dm3] 3L_9347588_SNP [dm6]	G	T	9.238e^-5	0.303	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	10618972	2R_10618972_SNP [dm3] 2R_14731467_SNP [dm6]	A	G	9.242e^-5	0.303	INTERGENIC
3L	8829419	3L_8829419_SNP [dm3] 3L_8836319_SNP [dm6]	T	A	9.276e^-5	0.303	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	9.276e^-5	0.303	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	16185678	2L_16185678_SNP [dm3] 2L_16185678_SNP [dm6]	T	A	9.304e^-5	0.303	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad
3L	10014349	3L_10014349_SNP [dm3] 3L_10021249_SNP [dm6]	T	C	9.318e^-5	0.303	INTRON dpr6
2L	3001508	2L_3001508_SNP [dm3] 2L_3001508_SNP [dm6]	G	T	9.365e^-5	0.304	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25290840	3R_25290840_SNP [dm3] 3R_29465118_SNP [dm6]	C	G	9.444e^-5	0.304	INTRON Ptp99A
2R	5537955	2R_5537955_SNP [dm3] 2R_9650450_SNP [dm6]	C	T	9.447e^-5	0.304	INTRON Mmp2
2L	5184977	2L_5184977_SNP [dm3] 2L_5184977_SNP [dm6]	T	A	9.457e^-5	0.304	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3165734	2L_3165734_SNP [dm3] 2L_3165734_SNP [dm6]	T	A	9.465e^-5	0.304	INTRON Hydr2	TF binding site BDTNP1_TFBS_da
2L	6224506	2L_6224506_SNP [dm3] 2L_6224506_SNP [dm6]	G	A	9.472e^-5	0.304	UPSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3482882	2L_3482882_SNP [dm3] 2L_3482882_SNP [dm6]	G	A	9.499e^-5	0.304	INTRON CG15414
2L	16848501	2L_16848501_SNP [dm3] 2L_16848501_SNP [dm6]	C	A	9.508e^-5	0.304	DOWNSTREAM CG31810 INTRON CG13284
2L	20088615	2L_20088615_SNP [dm3] 2L_20088615_SNP [dm6]	C	T	9.517e^-5	0.304	SYNONYMOUS_CODING neb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9340054	3L_9340054_SNP [dm3] 3L_9346954_SNP [dm6]	G	A	9.528e^-5	0.304	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	1297026	3R_1297026_SNP [dm3] 3R_5471304_SNP [dm6]	T	C	9.528e^-5	0.304	SYNONYMOUS_CODING Snr1 UPSTREAM mRpL44	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12290838	3R_12290838_SNP [dm3] 3R_16465116_SNP [dm6]	A	G	9.532e^-5	0.304	NON_SYNONYMOUS_CODING CG42232	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9948946	2L_9948946_SNP [dm3] 2L_9948946_SNP [dm6]	A	T	9.559e^-5	0.304	INTERGENIC	TF binding site mE1_TFBS_inv
2R	3812703	2R_3812703_SNP [dm3] 2R_7925198_SNP [dm6]	A	G	9.560e^-5	0.304	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	16193191	2L_16193191_SNP [dm3] 2L_16193191_SNP [dm6]	A	G	9.585e^-5	0.304	INTERGENIC
2L	21754824	2L_21754824_SNP [dm3] 2L_21754824_SNP [dm6]	A	G	9.604e^-5	0.304	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2003973	2L_2003973_INS [dm3] 2L_2003973_INS [dm6]	T	TT	9.677e^-5	0.304	DOWNSTREAM CR43464 INTRON CG33543
2R	8471642	2R_8471642_SNP [dm3] 2R_12584137_SNP [dm6]	C	A	9.679e^-5	0.304	NON_SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	7863930	3L_7863930_DEL [dm3] 3L_7870830_DEL [dm6]	ATTTGCCAGCAAA...	A	9.681e^-5	0.304	INTRON CG32365
X	12186127	X_12186127_SNP [dm3] X_12292094_SNP [dm6]	A	G	9.681e^-5	0.304	INTRON Ten-a
2R	18887951	2R_18887951_SNP [dm3] 2R_23000428_SNP [dm6]	G	A	9.698e^-5	0.304	INTRON twi
2L	3002173	2L_3002173_SNP [dm3] 2L_3002173_SNP [dm6]	A	T	9.710e^-5	0.304	INTRON CG17265
2L	10787552	2L_10787552_SNP [dm3] 2L_10787552_SNP [dm6]	C	G	9.730e^-5	0.304	INTRON CG31869
2L	1669689	2L_1669689_SNP [dm3] 2L_1669689_SNP [dm6]	A	T	9.733e^-5	0.304	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	15358542	3L_15358542_SNP [dm3] 3L_15365442_SNP [dm6]	T	C	9.745e^-5	0.304	INTERGENIC
2L	3248169	2L_3248169_SNP [dm3] 2L_3248169_SNP [dm6]	A	G	9.772e^-5	0.304	INTERGENIC
2L	6498350	2L_6498350_SNP [dm3] 2L_6498350_SNP [dm6]	C	A	9.869e^-5	0.307	UTR_3_PRIME CG9550 UPSTREAM CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	9338351	3L_9338351_SNP [dm3] 3L_9345251_SNP [dm6]	C	T	9.981e^-5	0.31	INTRON PGRP-LC
3L	2692999	3L_2692999_SNP [dm3] 3L_2692999_SNP [dm6]	A	G	9.993e^-5	0.31	INTRON Fife
X	13985728	X_13985728_SNP [dm3] X_14091695_SNP [dm6]	C	T	1.001e^-4	0.31	INTERGENIC
2L	7091386	2L_7091386_SNP [dm3] 2L_7091386_SNP [dm6]	T	C	1.006e^-4	0.31	INTERGENIC
2L	10789685	2L_10789685_SNP [dm3] 2L_10789685_SNP [dm6]	C	T	1.009e^-4	0.31	UPSTREAM CG31870 INTRON CG31869
2L	4713571	2L_4713571_SNP [dm3] 2L_4713571_SNP [dm6]	T	C	1.013e^-4	0.31	INTRON CG34351	TF binding site mE1_TFBS_inv
3R	18526806	3R_18526806_SNP [dm3] 3R_22701084_SNP [dm6]	A	G	1.013e^-4	0.31	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
2L	4832746	2L_4832746_INS [dm3] 2L_4832746_INS [dm6]	A	ACAAATATCGTACG...	1.016e^-4	0.31	INTRON Ir25a
2L	4830810	2L_4830810_SNP [dm3] 2L_4830810_SNP [dm6]	C	T	1.017e^-4	0.31	UPSTREAM mir-4912 & 1 other DOWNSTREAM Ir25a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	4712572	2L_4712572_SNP [dm3] 2L_4712572_SNP [dm6]	A	G	1.018e^-4	0.31	INTRON CG34351
2R	14049570	2R_14049570_SNP [dm3] 2R_18162065_SNP [dm6]	C	T	1.019e^-4	0.31	SYNONYMOUS_CODING CG10915
X	6830927	X_6830927_SNP [dm3] X_6936894_SNP [dm6]	T	G	1.023e^-4	0.31	INTRON CG14431
2R	17618532	2R_17618532_INS [dm3] 2R_21731027_INS [dm6]	T	TT	1.024e^-4	0.31	INTERGENIC
3L	8454394	3L_8454394_SNP [dm3] 3L_8461294_SNP [dm6]	G	A	1.025e^-4	0.31	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20301280	2L_20301280_SNP [dm3] 2L_20301280_SNP [dm6]	A	T	1.025e^-4	0.31	INTERGENIC
2L	6841575	2L_6841575_SNP [dm3] 2L_6841575_SNP [dm6]	G	A	1.026e^-4	0.31	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20103103	2R_20103103_SNP [dm3] 2R_24215580_SNP [dm6]	C	T	1.026e^-4	0.31	SYNONYMOUS_CODING CG30419	TF binding site mE1_TFBS_chinmo
2L	11786387	2L_11786387_SNP [dm3] 2L_11786387_SNP [dm6]	G	T	1.031e^-4	0.31	INTERGENIC
2L	20099157	2L_20099157_SNP [dm3] 2L_20099157_SNP [dm6]	G	C	1.033e^-4	0.31	UTR_5_PRIME Kua INTRON Kua	TF binding site BDTNP1_TFBS_dl
3L	12308510	3L_12308510_SNP [dm3] 3L_12315410_SNP [dm6]	G	A	1.035e^-4	0.31	INTERGENIC
2L	3486376	2L_3486376_SNP [dm3] 2L_3486376_SNP [dm6]	A	G	1.035e^-4	0.31	INTRON CG15414
2L	18440184	2L_18440184_SNP [dm3] 2L_18440184_SNP [dm6]	C	T	1.036e^-4	0.31	INTERGENIC
3L	9337796	3L_9337796_SNP [dm3] 3L_9344696_SNP [dm6]	C	T	1.037e^-4	0.31	INTRON PGRP-LC
2L	1619377	2L_1619377_DEL [dm3] 2L_1619377_DEL [dm6]	GCT	G	1.041e^-4	0.31	DOWNSTREAM CR44603 EXON CR44603
2L	3098579	2L_3098579_INS [dm3] 2L_3098579_INS [dm6]	T	ACTTTATAACC...	1.043e^-4	0.31	INTRON toc
2L	8649026	2L_8649026_SNP [dm3] 2L_8649026_SNP [dm6]	C	T	1.043e^-4	0.31	INTRON Sema-1a
X	20421951	X_20421951_SNP [dm3] X_20550924_SNP [dm6]	T	C	1.045e^-4	0.31	INTRON RunxB
3R	19569252	3R_19569252_SNP [dm3] 3R_23743530_SNP [dm6]	T	A	1.045e^-4	0.31	INTRON Hmgcr
2L	3597664	2L_3597664_SNP [dm3] 2L_3597664_SNP [dm6]	A	T	1.046e^-4	0.31	INTERGENIC
X	7439290	X_7439290_SNP [dm3] X_7545257_SNP [dm6]	A	C	1.048e^-4	0.31	INTRON CG32719
3R	7916643	3R_7916643_SNP [dm3] 3R_12090921_SNP [dm6]	G	T	1.048e^-4	0.31	UPSTREAM CG14741 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	6339774	2L_6339774_SNP [dm3] 2L_6339774_SNP [dm6]	C	A	1.052e^-4	0.311	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	2880060	2L_2880060_SNP [dm3] 2L_2880060_SNP [dm6]	C	T	1.055e^-4	0.311	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	5534890	2R_5534890_SNP [dm3] 2R_9647385_SNP [dm6]	G	A	1.059e^-4	0.311	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
2L	489437	2L_489437_SNP [dm3] 2L_489437_SNP [dm6]	G	A	1.061e^-4	0.311	INTRON ush
2L	14103886	2L_14103886_SNP [dm3] 2L_14103886_SNP [dm6]	G	T	1.062e^-4	0.311	UPSTREAM CG16879 INTERGENIC
3L	1437541	3L_1437541_SNP [dm3] 3L_1437541_SNP [dm6]	A	C	1.063e^-4	0.311	INTRON Ptp61F & 1 other
3R	25974604	3R_25974604_SNP [dm3] 3R_30148882_SNP [dm6]	A	T	1.064e^-4	0.311	INTRON AdoR
3L	12638675	3L_12638675_SNP [dm3] 3L_12645575_SNP [dm6]	C	A	1.066e^-4	0.311	EXON CR32111
2L	2998970	2L_2998970_SNP [dm3] 2L_2998970_SNP [dm6]	G	T	1.066e^-4	0.311	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h
2L	17015518	2L_17015518_SNP [dm3] 2L_17015518_SNP [dm6]	C	A	1.067e^-4	0.311	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4308573	2L_4308573_SNP [dm3] 2L_4308573_SNP [dm6]	C	T	1.070e^-4	0.311	INTRON tutl	TF binding site mE1_TFBS_cad
2L	14745454	2L_14745454_SNP [dm3] 2L_14745454_SNP [dm6]	C	T	1.074e^-4	0.312	UPSTREAM CR45459 & 1 other DOWNSTREAM CG42681 EXON CR45460
2L	9588298	2L_9588298_SNP [dm3] 2L_9588298_SNP [dm6]	G	A	1.076e^-4	0.312	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9402083	3L_9402083_SNP [dm3] 3L_9408983_SNP [dm6]	C	G	1.080e^-4	0.312	NON_SYNONYMOUS_CODING CG4022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	14675992	2L_14675992_DEL [dm3] 2L_14675992_DEL [dm6]	AA	A	1.080e^-4	0.312	INTRON osp
2L	168201	2L_168201_SNP [dm3] 2L_168201_SNP [dm6]	C	T	1.083e^-4	0.312	INTRON spen
2L	5155881	2L_5155881_INS [dm3] 2L_5155881_INS [dm6]	A	ATAT	1.084e^-4	0.312	INTRON Msp300	TF binding site mE1_TFBS_chinmo
2L	20093427	2L_20093427_SNP [dm3] 2L_20093427_SNP [dm6]	G	A	1.085e^-4	0.312	SYNONYMOUS_CODING Taf13 UPSTREAM nesd DOWNSTREAM CG10721	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14197488	3L_14197488_SNP [dm3] 3L_14204388_SNP [dm6]	C	A	1.086e^-4	0.312	DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2401421	3L_2401421_SNP [dm3] 3L_2401421_SNP [dm6]	G	C	1.088e^-4	0.312	INTRON CG45186
X	8208332	X_8208332_SNP [dm3] X_8314299_SNP [dm6]	A	G	1.089e^-4	0.312	INTRON nAChRalpha3	TF binding site mE1_TFBS_HSA
3R	26238173	3R_26238173_SNP [dm3] 3R_30412451_SNP [dm6]	T	C	1.091e^-4	0.312	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27007519	3R_27007519_SNP [dm3] 3R_31181797_SNP [dm6]	T	G	1.092e^-4	0.312	SYNONYMOUS_CODING mesh	TF binding site mE1_TFBS_cad
X	18065671	X_18065671_SNP [dm3] X_18171638_SNP [dm6]	C	T	1.095e^-4	0.312	UTR_3_PRIME Frq1
3L	10651529	3L_10651529_SNP [dm3] 3L_10658429_SNP [dm6]	C	T	1.101e^-4	0.312	INTRON CG32066	TF binding site mE1_TFBS_Trl
2L	18432615	2L_18432615_DEL [dm3] 2L_18432615_DEL [dm6]	GG	G	1.102e^-4	0.312	UPSTREAM CR44488 INTERGENIC
2R	9139358	2R_9139358_SNP [dm3] 2R_13251853_SNP [dm6]	T	C	1.104e^-4	0.312	UTR_3_PRIME CG4714 UPSTREAM CG4712	TF binding site mE1_TFBS_cad
2R	18045677	2R_18045677_SNP [dm3] 2R_22158172_SNP [dm6]	G	A	1.106e^-4	0.312	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6917513	2R_6917513_SNP [dm3] 2R_11030008_SNP [dm6]	G	C	1.107e^-4	0.312	INTRON luna	insulator Insulator_Class_II.mE01
3R	15153132	3R_15153132_SNP [dm3] 3R_19327410_SNP [dm6]	C	T	1.108e^-4	0.312	UPSTREAM mir-997 INTRON CR44175
2L	19775385	2L_19775385_SNP [dm3] 2L_19775385_SNP [dm6]	C	T	1.109e^-4	0.312	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
2L	3121377	2L_3121377_SNP [dm3] 2L_3121377_SNP [dm6]	C	G	1.110e^-4	0.312	INTRON toc
2L	14194182	2L_14194182_SNP [dm3] 2L_14194182_SNP [dm6]	C	G	1.110e^-4	0.312	INTRON Dyrk2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19724236	2L_19724236_SNP [dm3] 2L_19724236_SNP [dm6]	C	A	1.111e^-4	0.312	INTRON Lar
X	3216995	X_3216995_SNP [dm3] X_3322962_SNP [dm6]	T	A	1.112e^-4	0.312	INTRON CR44886 & 1 other
2L	21815305	2L_21815305_SNP [dm3] 2L_21815305_SNP [dm6]	C	A	1.114e^-4	0.312	INTERGENIC
2R	13059636	2R_13059636_SNP [dm3] 2R_17172131_SNP [dm6]	A	C	1.116e^-4	0.312	INTERGENIC
2L	10830723	2L_10830723_SNP [dm3] 2L_10830723_SNP [dm6]	T	C	1.118e^-4	0.312	INTRON Nos
3L	12638151	3L_12638151_SNP [dm3] 3L_12645051_SNP [dm6]	C	T	1.125e^-4	0.312	INTRON CR32111	regulatory region REDfly_CRMs
2L	13045735	2L_13045735_SNP [dm3] 2L_13045735_SNP [dm6]	A	T	1.128e^-4	0.312	INTRON CG9932
2R	9921665	2R_9921665_SNP [dm3] 2R_14034160_SNP [dm6]	T	C	1.130e^-4	0.312	INTRON mam
3L	16896464	3L_16896464_SNP [dm3] 3L_16903364_SNP [dm6]	G	A	1.130e^-4	0.312	SYNONYMOUS_CODING Lmpt INTRON Lmpt
X	15869990	X_15869990_SNP [dm3] X_15975957_SNP [dm6]	T	A	1.132e^-4	0.312	UPSTREAM CG42766 INTRON Or13a
2L	20092527	2L_20092527_SNP [dm3] 2L_20092527_SNP [dm6]	C	G	1.133e^-4	0.312	NON_SYNONYMOUS_CODING CG10721 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	21859374	2L_21859374_DEL [dm3] 2L_21859374_DEL [dm6]	ATCTGAATCGCTCTCCTTTC...	A	1.137e^-4	0.312	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7424512	2R_7424512_SNP [dm3] 2R_11537007_SNP [dm6]	T	C	1.137e^-4	0.312	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7616792	2L_7616792_INS [dm3] 2L_7616792_INS [dm6]	C	CC	1.139e^-4	0.312	DOWNSTREAM CG6739 INTERGENIC
2L	6801527	2L_6801527_SNP [dm3] 2L_6801527_SNP [dm6]	T	C	1.142e^-4	0.312	UTR_3_PRIME CG17377 UPSTREAM CG17376	regulatory region REDfly_CRMs
2L	21860322	2L_21860322_SNP [dm3] 2L_21860322_SNP [dm6]	A	G	1.142e^-4	0.312	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_jumu
2L	20084558	2L_20084558_SNP [dm3] 2L_20084558_SNP [dm6]	G	A	1.143e^-4	0.312	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8180224	2L_8180224_SNP [dm3] 2L_8180224_SNP [dm6]	G	T	1.143e^-4	0.312	NON_SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
X	5849915	X_5849915_SNP [dm3] X_5955882_SNP [dm6]	A	G	1.144e^-4	0.312	INTRON CG6067
2L	9393529	2L_9393529_SNP [dm3] 2L_9393529_SNP [dm6]	A	G	1.145e^-4	0.312	INTRON Shawl
2L	1339906	2L_1339906_SNP [dm3] 2L_1339906_SNP [dm6]	C	G	1.146e^-4	0.312	INTERGENIC	TF binding site mE1_TFBS_cad
X	7438983	X_7438983_SNP [dm3] X_7544950_SNP [dm6]	A	G	1.147e^-4	0.312	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8098895	3L_8098895_SNP [dm3] 3L_8105795_SNP [dm6]	C	A	1.152e^-4	0.313	UTR_3_PRIME Ect4 INTRON Ect4	TF binding site mE1_TFBS_cad
X	6519697	X_6519697_SNP [dm3] X_6625664_SNP [dm6]	A	G	1.153e^-4	0.313	INTRON pigs	TF binding site BDTNP1_TFBS_dl
2L	10356459	2L_10356459_SNP [dm3] 2L_10356459_SNP [dm6]	A	G	1.159e^-4	0.313	UTR_5_PRIME CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4002200	2L_4002200_SNP [dm3] 2L_4002200_SNP [dm6]	C	A	1.162e^-4	0.313	DOWNSTREAM CR45344 INTERGENIC
2R	5535496	2R_5535496_SNP [dm3] 2R_9647991_SNP [dm6]	C	T	1.162e^-4	0.313	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
2L	1006758	2L_1006758_SNP [dm3] 2L_1006758_SNP [dm6]	A	C	1.163e^-4	0.313	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	12638165	3L_12638165_SNP [dm3] 3L_12645065_SNP [dm6]	A	T	1.164e^-4	0.313	INTRON CR32111	regulatory region REDfly_CRMs
2R	17019207	2R_17019207_SNP [dm3] 2R_21131702_SNP [dm6]	G	A	1.165e^-4	0.313	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11769757	3L_11769757_SNP [dm3] 3L_11776657_SNP [dm6]	T	C	1.167e^-4	0.313	UPSTREAM CG14131 INTRON Pi3K68D	TF binding site mE1_TFBS_cad
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	1.169e^-4	0.313	UPSTREAM hoe1 INTRON hoe1
2L	16128539	2L_16128539_SNP [dm3] 2L_16128539_SNP [dm6]	T	C	1.170e^-4	0.313	INTERGENIC
2R	7423508	2R_7423508_SNP [dm3] 2R_11536003_SNP [dm6]	G	A	1.171e^-4	0.313	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19136590	X_19136590_SNP [dm3] X_19242557_SNP [dm6]	C	T	1.172e^-4	0.313	UPSTREAM CG14196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4911563	2L_4911563_SNP [dm3] 2L_4911563_SNP [dm6]	A	T	1.175e^-4	0.313	INTRON hoe1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12684945	2R_12684945_SNP [dm3] 2R_16797440_SNP [dm6]	G	A	1.177e^-4	0.314	INTERGENIC
2L	12965407	2L_12965407_SNP [dm3] 2L_12965407_SNP [dm6]	G	C	1.180e^-4	0.314	INTERGENIC
X	16199857	X_16199857_SNP [dm3] X_16305824_SNP [dm6]	C	T	1.184e^-4	0.315	SYNONYMOUS_CODING CG3679	TF binding site mE1_TFBS_sens
2L	12213377	2L_12213377_DEL [dm3] 2L_12213377_DEL [dm6]	GAAGTAG	G	1.189e^-4	0.315	INTRON aret
3L	9231451	3L_9231451_SNP [dm3] 3L_9238351_SNP [dm6]	C	A	1.191e^-4	0.315	INTERGENIC
3L	10269132	3L_10269132_SNP [dm3] 3L_10276032_SNP [dm6]	T	C	1.194e^-4	0.315	INTERGENIC
2R	3130181	2R_3130181_DEL [dm3] 2R_7242676_DEL [dm6]	ACTTGTGTGGGAT...	A	1.195e^-4	0.315	DOWNSTREAM Ady43A INTERGENIC
3R	26238174	3R_26238174_SNP [dm3] 3R_30412452_SNP [dm6]	G	A	1.195e^-4	0.315	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	484194	3L_484194_SNP [dm3] 3L_484194_SNP [dm6]	C	T	1.199e^-4	0.315	INTRON klar	TF binding site mE1_TFBS_HSA
2L	10802584	2L_10802584_SNP [dm3] 2L_10802584_SNP [dm6]	G	C	1.202e^-4	0.315	EXON CR44581
3R	26095905	3R_26095905_SNP [dm3] 3R_30270183_SNP [dm6]	A	T	1.202e^-4	0.315	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14298010	2L_14298010_SNP [dm3] 2L_14298010_SNP [dm6]	C	T	1.203e^-4	0.315	INTRON wb
2R	3812903	2R_3812903_SNP [dm3] 2R_7925398_SNP [dm6]	A	T	1.204e^-4	0.315	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19180344	2R_19180344_SNP [dm3] 2R_23292821_SNP [dm6]	C	T	1.205e^-4	0.315	INTERGENIC
2L	18659816	2L_18659816_SNP [dm3] 2L_18659816_SNP [dm6]	T	C	1.211e^-4	0.316	INTRON MESR3	TF binding site mE1_TFBS_chinmo
2L	5183408	2L_5183408_SNP [dm3] 2L_5183408_SNP [dm6]	A	G	1.211e^-4	0.316	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	10356496	2L_10356496_SNP [dm3] 2L_10356496_SNP [dm6]	G	C	1.212e^-4	0.316	UTR_5_PRIME CG5367 UPSTREAM CG5045	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3248192	2L_3248192_SNP [dm3] 2L_3248192_SNP [dm6]	C	T	1.213e^-4	0.316	INTERGENIC
2L	3885393	2L_3885393_SNP [dm3] 2L_3885393_SNP [dm6]	G	A	1.218e^-4	0.316	INTRON capu	TF binding site mE1_TFBS_bab1
2L	6791250	2L_6791250_SNP [dm3] 2L_6791250_SNP [dm6]	T	C	1.221e^-4	0.316	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	12320060	3L_12320060_SNP [dm3] 3L_12326960_SNP [dm6]	T	G	1.224e^-4	0.316	INTERGENIC
3R	7868879	3R_7868879_SNP [dm3] 3R_12043157_SNP [dm6]	C	A	1.224e^-4	0.316	UTR_3_PRIME CG14736 DOWNSTREAM CG14736
2L	22339456	2L_22339456_SNP [dm3] 2L_22339456_SNP [dm6]	G	C	1.227e^-4	0.316	INTRON CG17018	transposable element FlyBase
3R	18679798	3R_18679798_INS [dm3] 3R_22854076_INS [dm6]	G	GT	1.230e^-4	0.316	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13682514	2R_13682514_SNP [dm3] 2R_17795009_SNP [dm6]	A	T	1.237e^-4	0.316	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12360094	2R_12360094_SNP [dm3] 2R_16472589_SNP [dm6]	T	C	1.237e^-4	0.316	INTERGENIC
2L	9948936	2L_9948936_SNP [dm3] 2L_9948936_SNP [dm6]	G	T	1.239e^-4	0.316	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1622488	2L_1622488_SNP [dm3] 2L_1622488_SNP [dm6]	G	C	1.240e^-4	0.316	EXON CR44603
X	6519878	X_6519878_SNP [dm3] X_6625845_SNP [dm6]	T	C	1.240e^-4	0.316	INTRON pigs
2R	3132503	2R_3132503_SNP [dm3] 2R_7244998_SNP [dm6]	C	T	1.243e^-4	0.316	NON_SYNONYMOUS_CODING Ady43A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5184818	2L_5184818_SNP [dm3] 2L_5184818_SNP [dm6]	T	C	1.244e^-4	0.316	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2693503	3L_2693503_SNP [dm3] 3L_2693503_SNP [dm6]	C	T	1.245e^-4	0.316	INTRON Fife
3R	20633699	3R_20633699_SNP [dm3] 3R_24807977_SNP [dm6]	G	T	1.246e^-4	0.316	NON_SYNONYMOUS_CODING CG6980 INTRON CG5807
3R	8177740	3R_8177740_SNP [dm3] 3R_12352018_SNP [dm6]	T	A	1.247e^-4	0.316	NON_SYNONYMOUS_START CG10041 DOWNSTREAM MBD-R2	TF binding site mE1_TFBS_cad
2L	20254886	2L_20254886_SNP [dm3] 2L_20254886_SNP [dm6]	A	T	1.248e^-4	0.316	UPSTREAM CR40465 INTERGENIC
2L	5183396	2L_5183396_SNP [dm3] 2L_5183396_SNP [dm6]	A	T	1.248e^-4	0.316	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	11870024	2L_11870024_SNP [dm3] 2L_11870024_SNP [dm6]	A	G	1.248e^-4	0.316	INTRON Pde1c
3R	12327425	3R_12327425_SNP [dm3] 3R_16501703_SNP [dm6]	G	T	1.253e^-4	0.316	UPSTREAM decay INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	6199009	2L_6199009_SNP [dm3] 2L_6199009_SNP [dm6]	C	A	1.255e^-4	0.316	INTRON CG34380
2L	15983740	2L_15983740_SNP [dm3] 2L_15983740_SNP [dm6]	T	A	1.256e^-4	0.316	INTERGENIC
2L	13479421	2L_13479421_SNP [dm3] 2L_13479421_SNP [dm6]	C	T	1.258e^-4	0.316	INTRON CG42784
3R	25796201	3R_25796201_SNP [dm3] 3R_29970479_SNP [dm6]	A	G	1.259e^-4	0.316	INTERGENIC
3L	12638711	3L_12638711_SNP [dm3] 3L_12645611_SNP [dm6]	C	A	1.260e^-4	0.316	EXON CR32111
2L	1028638	2L_1028638_SNP [dm3] 2L_1028638_SNP [dm6]	A	T	1.261e^-4	0.316	INTRON IA-2
2L	766719	2L_766719_SNP [dm3] 2L_766719_SNP [dm6]	G	T	1.264e^-4	0.316	INTERGENIC
3R	13166803	3R_13166803_SNP [dm3] 3R_17341081_SNP [dm6]	T	C	1.265e^-4	0.316	INTRON beat-IIa
2L	15001094	2L_15001094_SNP [dm3] 2L_15001094_SNP [dm6]	T	C	1.266e^-4	0.316	INTERGENIC
2R	4600368	2R_4600368_SNP [dm3] 2R_8712863_SNP [dm6]	A	G	1.266e^-4	0.316	UPSTREAM PGRP-SC1b INTRON CG14743
3L	12638714	3L_12638714_SNP [dm3] 3L_12645614_SNP [dm6]	T	A	1.268e^-4	0.316	EXON CR32111
2L	5195638	2L_5195638_SNP [dm3] 2L_5195638_SNP [dm6]	T	C	1.268e^-4	0.316	UPSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10310307	3R_10310307_SNP [dm3] 3R_14484585_SNP [dm6]	G	A	1.271e^-4	0.316	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3130175	2R_3130175_SNP [dm3] 2R_7242670_SNP [dm6]	T	G	1.273e^-4	0.316	DOWNSTREAM Ady43A INTERGENIC
3L	8829418	3L_8829418_SNP [dm3] 3L_8836318_SNP [dm6]	A	G	1.273e^-4	0.316	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
3L	8487426	3L_8487426_DEL [dm3] 3L_8494326_DEL [dm6]	GAAGTAGATG	G	1.278e^-4	0.316	INTRON CG43163
3L	16896207	3L_16896207_SNP [dm3] 3L_16903107_SNP [dm6]	G	A	1.280e^-4	0.316	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2L	9851686	2L_9851686_SNP [dm3] 2L_9851686_SNP [dm6]	A	C	1.284e^-4	0.316	INTRON nAChRalpha6
2L	5122091	2L_5122091_SNP [dm3] 2L_5122091_SNP [dm6]	C	T	1.284e^-4	0.316	INTRON Msp300
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	1.285e^-4	0.316	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16448699	2L_16448699_SNP [dm3] 2L_16448699_SNP [dm6]	T	C	1.288e^-4	0.316	UPSTREAM Idgf2 & 1 other INTRON Idgf2
X	7438908	X_7438908_SNP [dm3] X_7544875_SNP [dm6]	T	C	1.289e^-4	0.316	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13551597	2R_13551597_SNP [dm3] 2R_17664092_SNP [dm6]	A	C	1.289e^-4	0.316	INTRON CCHa1-R
2L	10792101	2L_10792101_SNP [dm3] 2L_10792101_SNP [dm6]	G	T	1.290e^-4	0.316	DOWNSTREAM CG31870 INTRON CG31869
2L	16179660	2L_16179660_SNP [dm3] 2L_16179660_SNP [dm6]	A	G	1.292e^-4	0.316	UPSTREAM CR43806 INTRON Ca-alpha1D
2L	13464670	2L_13464670_SNP [dm3] 2L_13464670_SNP [dm6]	G	A	1.298e^-4	0.316	INTRON CG42784
2L	21884878	2L_21884878_SNP [dm3] 2L_21884878_SNP [dm6]	G	T	1.299e^-4	0.316	INTERGENIC
X	6127575	X_6127575_SNP [dm3] X_6233542_SNP [dm6]	A	G	1.299e^-4	0.316	UTR_3_PRIME CG14446 DOWNSTREAM CG14446
2L	15499112	2L_15499112_SNP [dm3] 2L_15499112_SNP [dm6]	G	A	1.304e^-4	0.316	UPSTREAM lace INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	7868880	3R_7868880_SNP [dm3] 3R_12043158_SNP [dm6]	A	T	1.304e^-4	0.316	UTR_3_PRIME CG14736 DOWNSTREAM CG14736
X	14040053	X_14040053_SNP [dm3] X_14146020_SNP [dm6]	G	A	1.306e^-4	0.316	INTERGENIC
2L	15505552	2L_15505552_SNP [dm3] 2L_15505552_SNP [dm6]	T	C	1.307e^-4	0.316	DOWNSTREAM lace INTERGENIC
3R	25814166	3R_25814166_SNP [dm3] 3R_29988444_SNP [dm6]	C	T	1.308e^-4	0.316	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	909377	2L_909377_SNP [dm3] 2L_909377_SNP [dm6]	G	A	1.309e^-4	0.316	INTERGENIC
2L	5183384	2L_5183384_SNP [dm3] 2L_5183384_SNP [dm6]	C	T	1.312e^-4	0.316	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	3392775	2L_3392775_SNP [dm3] 2L_3392775_SNP [dm6]	A	G	1.313e^-4	0.316	INTERGENIC
2L	20564614	2L_20564614_SNP [dm3] 2L_20564614_SNP [dm6]	G	A	1.314e^-4	0.316	INTRON CR45347	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	9822834	2L_9822834_DEL [dm3] 2L_9822834_DEL [dm6]	CC	C	1.315e^-4	0.316	INTRON nAChRalpha6
3R	12784794	3R_12784794_SNP [dm3] 3R_16959072_SNP [dm6]	T	G	1.318e^-4	0.316	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2384913	3L_2384913_SNP [dm3] 3L_2384913_SNP [dm6]	T	C	1.318e^-4	0.316	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19768303	3R_19768303_SNP [dm3] 3R_23942581_SNP [dm6]	G	A	1.319e^-4	0.316	INTRON Gdh
2R	6893971	2R_6893971_INS [dm3] 2R_11006466_INS [dm6]	T	TT	1.320e^-4	0.316	INTRON luna
2L	19794112	2L_19794112_SNP [dm3] 2L_19794112_SNP [dm6]	A	G	1.322e^-4	0.316	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
X	21447713	X_21447713_SNP [dm3] X_21576686_SNP [dm6]	C	A	1.323e^-4	0.316	INTERGENIC
3L	10015854	3L_10015854_SNP [dm3] 3L_10022754_SNP [dm6]	G	T	1.326e^-4	0.316	INTRON dpr6
3L	17216457	3L_17216457_SNP [dm3] 3L_17223357_SNP [dm6]	T	A	1.328e^-4	0.316	INTRON Rbp6
2L	20087275	2L_20087275_SNP [dm3] 2L_20087275_SNP [dm6]	T	A	1.329e^-4	0.316	INTRON neb
3L	20544487	3L_20544487_SNP [dm3] 3L_20551387_SNP [dm6]	T	C	1.335e^-4	0.316	INTERGENIC
3L	7864334	3L_7864334_INS [dm3] 3L_7871234_INS [dm6]	G	AA	1.336e^-4	0.316	INTRON CG32365
3L	16896287	3L_16896287_SNP [dm3] 3L_16903187_SNP [dm6]	C	T	1.336e^-4	0.316	SYNONYMOUS_CODING Lmpt INTRON Lmpt
X	4698395	X_4698395_SNP [dm3] X_4804362_SNP [dm6]	C	G	1.337e^-4	0.316	INTRON CG2861
2L	1619105	2L_1619105_SNP [dm3] 2L_1619105_SNP [dm6]	G	A	1.338e^-4	0.316	DOWNSTREAM CR44603 EXON CR44603
2L	16572452	2L_16572452_SNP [dm3] 2L_16572452_SNP [dm6]	A	G	1.339e^-4	0.316	INTRON CG42389
2L	17957366	2L_17957366_SNP [dm3] 2L_17957366_SNP [dm6]	A	T	1.339e^-4	0.316	INTERGENIC
2L	1102995	2L_1102995_SNP [dm3] 2L_1102995_SNP [dm6]	G	A	1.343e^-4	0.316	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3L	8879063	3L_8879063_SNP [dm3] 3L_8885963_SNP [dm6]	T	G	1.343e^-4	0.316	INTRON dally
3L	9402067	3L_9402067_SNP [dm3] 3L_9408967_SNP [dm6]	G	A	1.345e^-4	0.316	NON_SYNONYMOUS_CODING CG4022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	27703184	3R_27703184_DEL [dm3] 3R_31877462_DEL [dm6]	TT	T	1.346e^-4	0.316	INTRON heph	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13964250	3L_13964250_SNP [dm3] 3L_13971150_SNP [dm6]	T	G	1.354e^-4	0.316	INTRON ssp2 & 1 other	TF binding site mE1_TFBS_cad
2L	4229446	2L_4229446_SNP [dm3] 2L_4229446_SNP [dm6]	A	G	1.355e^-4	0.316	DOWNSTREAM RpL40 EXON CR44608
2L	5195532	2L_5195532_SNP [dm3] 2L_5195532_SNP [dm6]	T	C	1.356e^-4	0.316	UPSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8884365	3L_8884365_DEL [dm3] 3L_8891265_DEL [dm6]	TA	T	1.356e^-4	0.316	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	9399253	2L_9399253_SNP [dm3] 2L_9399253_SNP [dm6]	A	G	1.357e^-4	0.316	INTRON Shawl
2L	3415018	2L_3415018_SNP [dm3] 2L_3415018_SNP [dm6]	G	A	1.358e^-4	0.316	INTRON pgant2
2L	2124797	2L_2124797_SNP [dm3] 2L_2124797_SNP [dm6]	T	A	1.360e^-4	0.316	INTERGENIC
2L	7379672	2L_7379672_SNP [dm3] 2L_7379672_SNP [dm6]	A	G	1.361e^-4	0.316	INTRON ninaC
3R	18580972	3R_18580972_SNP [dm3] 3R_22755250_SNP [dm6]	A	G	1.362e^-4	0.316	UTR_5_PRIME CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16552532	2L_16552532_SNP [dm3] 2L_16552532_SNP [dm6]	G	A	1.363e^-4	0.316	INTRON CG42389
2L	17432197	2L_17432197_DEL [dm3] 2L_17432197_DEL [dm6]	AA	A	1.371e^-4	0.317	INTRON Dif
X	21447795	X_21447795_SNP [dm3] X_21576768_SNP [dm6]	A	G	1.373e^-4	0.317	INTERGENIC
3L	8829998	3L_8829998_SNP [dm3] 3L_8836898_SNP [dm6]	C	T	1.373e^-4	0.317	SYNONYMOUS_CODING CG32026 INTRON dally
2R	18710973	2R_18710973_SNP [dm3] 2R_22823450_SNP [dm6]	A	G	1.374e^-4	0.317	NON_SYNONYMOUS_CODING CG42284	TF binding site mE1_TFBS_chinmo
2R	9967556	2R_9967556_SNP [dm3] 2R_14080051_SNP [dm6]	T	C	1.378e^-4	0.317	INTRON Prosap
3L	2272407	3L_2272407_SNP [dm3] 3L_2272407_SNP [dm6]	G	T	1.379e^-4	0.317	SYNONYMOUS_CODING yellow-g	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18432768	2L_18432768_SNP [dm3] 2L_18432768_SNP [dm6]	G	C	1.381e^-4	0.317	UPSTREAM CR44488 INTERGENIC
2L	3939089	2L_3939089_SNP [dm3] 2L_3939089_SNP [dm6]	A	C	1.386e^-4	0.318	INTRON fred
2L	16748057	2L_16748057_SNP [dm3] 2L_16748057_SNP [dm6]	C	T	1.387e^-4	0.318	UTR_3_PRIME CG17912 INTRON CG17912
X	5850037	X_5850037_SNP [dm3] X_5956004_SNP [dm6]	G	A	1.393e^-4	0.319	INTRON CG6067
2R	8472447	2R_8472447_SNP [dm3] 2R_12584942_SNP [dm6]	T	C	1.393e^-4	0.319	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	1.398e^-4	0.319	INTRON aret
3R	22230984	3R_22230984_SNP [dm3] 3R_26405262_SNP [dm6]	C	T	1.398e^-4	0.319	INTERGENIC
2L	15139099	2L_15139099_SNP [dm3] 2L_15139099_SNP [dm6]	A	C	1.401e^-4	0.319	INTERGENIC
3L	12637694	3L_12637694_SNP [dm3] 3L_12644594_SNP [dm6]	A	G	1.402e^-4	0.319	INTRON CR32111	regulatory region REDfly_CRMs
X	11353524	X_11353524_SNP [dm3] X_11459491_SNP [dm6]	C	T	1.402e^-4	0.319	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
3R	26379673	3R_26379673_SNP [dm3] 3R_30553951_SNP [dm6]	T	A	1.404e^-4	0.319	DOWNSTREAM CG34155 INTRON tmod
2L	4006007	2L_4006007_SNP [dm3] 2L_4006007_SNP [dm6]	A	G	1.410e^-4	0.32	UPSTREAM CG15423 DOWNSTREAM CG15422 INTERGENIC
2L	235762	2L_235762_SNP [dm3] 2L_235762_SNP [dm6]	G	A	1.412e^-4	0.32	SYNONYMOUS_CODING kis	TF binding site mE1_TFBS_sens
3L	7864044	3L_7864044_SNP [dm3] 3L_7870944_SNP [dm6]	T	G	1.417e^-4	0.32	INTRON CG32365
2L	10775049	2L_10775049_SNP [dm3] 2L_10775049_SNP [dm6]	G	A	1.421e^-4	0.32	INTRON CG31869
3R	12295752	3R_12295752_SNP [dm3] 3R_16470030_SNP [dm6]	A	C	1.422e^-4	0.32	UPSTREAM CSN5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21840208	2L_21840208_SNP [dm3] 2L_21840208_SNP [dm6]	T	C	1.422e^-4	0.32	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16084578	3L_16084578_SNP [dm3] 3L_16091478_SNP [dm6]	C	T	1.424e^-4	0.32	INTRON ClC-c
2L	10210055	2L_10210055_SNP [dm3] 2L_10210055_SNP [dm6]	G	A	1.429e^-4	0.32	SYNONYMOUS_CODING CG5727 UPSTREAM CG5731 DOWNSTREAM CR44845
2R	16266416	2R_16266416_DEL [dm3] 2R_20378911_DEL [dm6]	GCCAG	G	1.429e^-4	0.32	INTERGENIC
2R	16923789	2R_16923789_SNP [dm3] 2R_21036284_SNP [dm6]	C	A	1.429e^-4	0.32	INTERGENIC
2R	11990965	2R_11990965_SNP [dm3] 2R_16103460_SNP [dm6]	C	A	1.429e^-4	0.32	UPSTREAM Rho1 & 1 other INTRON Rho1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9750728	3L_9750728_SNP [dm3] 3L_9757628_SNP [dm6]	G	T	1.431e^-4	0.32	INTRON CG42268
X	6129289	X_6129289_SNP [dm3] X_6235256_SNP [dm6]	C	T	1.432e^-4	0.32	UTR_3_PRIME CG14446
2L	5196844	2L_5196844_SNP [dm3] 2L_5196844_SNP [dm6]	G	C	1.434e^-4	0.32	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	6666379	2R_6666379_SNP [dm3] 2R_10778874_SNP [dm6]	G	A	1.436e^-4	0.32	INTRON CG33144	TF binding site mE1_TFBS_kn
2L	4349340	2L_4349340_SNP [dm3] 2L_4349340_SNP [dm6]	G	A	1.437e^-4	0.32	DOWNSTREAM CR44698 EXON CR44699	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9611436	3L_9611436_SNP [dm3] 3L_9618336_SNP [dm6]	C	A	1.439e^-4	0.32	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
2L	10435411	2L_10435411_SNP [dm3] 2L_10435411_SNP [dm6]	T	G	1.442e^-4	0.32	UTR_5_PRIME CG5337 UPSTREAM holn1	TF binding site mE1_TFBS_cad
2L	3695812	2L_3695812_SNP [dm3] 2L_3695812_SNP [dm6]	A	G	1.443e^-4	0.32	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2L	11434741	2L_11434741_DEL [dm3] 2L_11434741_DEL [dm6]	GG	G	1.445e^-4	0.32	UTR_3_PRIME salm
3L	5136464	3L_5136464_SNP [dm3] 3L_5143364_SNP [dm6]	T	C	1.446e^-4	0.32	SYNONYMOUS_CODING CG4623 DOWNSTREAM CG10671	TF binding site mE1_TFBS_chinmo
2L	877046	2L_877046_SNP [dm3] 2L_877046_SNP [dm6]	A	T	1.448e^-4	0.32	UPSTREAM ninaA DOWNSTREAM CG15824 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	17714528	2L_17714528_SNP [dm3] 2L_17714528_SNP [dm6]	T	A	1.456e^-4	0.322	INTRON CadN
2L	5074858	2L_5074858_DEL [dm3] 2L_5074858_DEL [dm6]	AA	A	1.459e^-4	0.322	INTRON pgant5
2L	22063176	2L_22063176_INS [dm3] 2L_22063176_INS [dm6]	T	TA	1.461e^-4	0.322	INTERGENIC
2L	16562498	2L_16562498_SNP [dm3] 2L_16562498_SNP [dm6]	C	T	1.462e^-4	0.322	INTRON CG42389
X	7438924	X_7438924_SNP [dm3] X_7544891_SNP [dm6]	A	C	1.465e^-4	0.322	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20002394	X_20002394_SNP [dm3] X_20108361_SNP [dm6]	C	T	1.465e^-4	0.322	INTERGENIC
3L	7864329	3L_7864329_INS [dm3] 3L_7871229_INS [dm6]	G	TATA	1.468e^-4	0.322	INTRON CG32365
2L	9182993	2L_9182993_SNP [dm3] 2L_9182993_SNP [dm6]	G	A	1.470e^-4	0.322	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8438520	3L_8438520_SNP [dm3] 3L_8445420_SNP [dm6]	T	A	1.471e^-4	0.322	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3L	15943976	3L_15943976_SNP [dm3] 3L_15950876_SNP [dm6]	A	T	1.474e^-4	0.322	INTRON Pka-C3
3R	18840187	3R_18840187_SNP [dm3] 3R_23014465_SNP [dm6]	C	T	1.475e^-4	0.322	SYNONYMOUS_CODING CG6688	TF binding site mE1_TFBS_chinmo
2R	6052531	2R_6052531_SNP [dm3] 2R_10165026_SNP [dm6]	G	C	1.476e^-4	0.322	INTRON KCNQ	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6841574	2L_6841574_SNP [dm3] 2L_6841574_SNP [dm6]	A	T	1.477e^-4	0.322	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12802184	2L_12802184_SNP [dm3] 2L_12802184_SNP [dm6]	A	G	1.482e^-4	0.322	INTERGENIC
2L	10782258	2L_10782258_SNP [dm3] 2L_10782258_SNP [dm6]	G	C	1.483e^-4	0.322	INTRON CG31869
3R	26095877	3R_26095877_SNP [dm3] 3R_30270155_SNP [dm6]	T	A	1.484e^-4	0.322	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17015529	2L_17015529_SNP [dm3] 2L_17015529_SNP [dm6]	G	C	1.484e^-4	0.322	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7864099	3L_7864099_SNP [dm3] 3L_7870999_SNP [dm6]	C	T	1.485e^-4	0.322	INTRON CG32365
2R	3462722	2R_3462722_SNP [dm3] 2R_7575217_SNP [dm6]	C	T	1.493e^-4	0.323	SYNONYMOUS_CODING Vps13
2L	21747789	2L_21747789_SNP [dm3] 2L_21747789_SNP [dm6]	G	A	1.498e^-4	0.324	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14040614	X_14040614_SNP [dm3] X_14146581_SNP [dm6]	T	G	1.504e^-4	0.324	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8438521	3L_8438521_SNP [dm3] 3L_8445421_SNP [dm6]	C	T	1.505e^-4	0.324	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3L	8439971	3L_8439971_SNP [dm3] 3L_8446871_SNP [dm6]	C	T	1.505e^-4	0.324	INTRON CG6983
3L	12638430	3L_12638430_SNP [dm3] 3L_12645330_SNP [dm6]	A	G	1.511e^-4	0.325	INTRON CR32111
3L	9997378	3L_9997378_SNP [dm3] 3L_10004278_SNP [dm6]	C	T	1.512e^-4	0.325	INTRON dpr6
3R	25801148	3R_25801148_SNP [dm3] 3R_29975426_SNP [dm6]	T	A	1.523e^-4	0.327	INTERGENIC
2R	3801142	2R_3801142_SNP [dm3] 2R_7913637_SNP [dm6]	A	T	1.528e^-4	0.327	INTRON CG30377
2R	2876797	2R_2876797_SNP [dm3] 2R_6989292_SNP [dm6]	C	T	1.528e^-4	0.327	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
2L	10400811	2L_10400811_SNP [dm3] 2L_10400811_SNP [dm6]	A	T	1.535e^-4	0.327	SYNONYMOUS_CODING Cnot4
2R	7956906	2R_7956906_SNP [dm3] 2R_12069401_SNP [dm6]	T	G	1.536e^-4	0.327	INTRON CG8888	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14575438	X_14575438_SNP [dm3] X_14681405_SNP [dm6]	T	C	1.536e^-4	0.327	UTR_3_PRIME CG5321 DOWNSTREAM CG5321
2L	19724239	2L_19724239_SNP [dm3] 2L_19724239_SNP [dm6]	T	A	1.537e^-4	0.327	INTRON Lar
2L	19724240	2L_19724240_SNP [dm3] 2L_19724240_SNP [dm6]	C	T	1.537e^-4	0.327	INTRON Lar
3R	23275272	3R_23275272_SNP [dm3] 3R_27449550_SNP [dm6]	G	A	1.540e^-4	0.327	INTERGENIC
2L	20512044	2L_20512044_SNP [dm3] 2L_20512044_SNP [dm6]	G	T	1.542e^-4	0.327	INTERGENIC
2L	14246302	2L_14246302_SNP [dm3] 2L_14246302_SNP [dm6]	A	T	1.545e^-4	0.327	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3244351	2R_3244351_SNP [dm3] 2R_7356846_SNP [dm6]	G	A	1.547e^-4	0.327	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site mE1_TFBS_HSA
2R	15873349	2R_15873349_SNP [dm3] 2R_19985844_SNP [dm6]	T	G	1.548e^-4	0.327	DOWNSTREAM CG8654 INTERGENIC
X	3544862	X_3544862_SNP [dm3] X_3650829_SNP [dm6]	A	C	1.550e^-4	0.327	INTRON AstA-R1
2L	6498369	2L_6498369_SNP [dm3] 2L_6498369_SNP [dm6]	G	A	1.550e^-4	0.327	UTR_3_PRIME CG9550 UPSTREAM CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2L	12869914	2L_12869914_SNP [dm3] 2L_12869914_SNP [dm6]	G	T	1.554e^-4	0.328	INTERGENIC
3L	1682673	3L_1682673_SNP [dm3] 3L_1682673_SNP [dm6]	T	A	1.560e^-4	0.328	INTRON CG7991
X	7438923	X_7438923_SNP [dm3] X_7544890_SNP [dm6]	T	A	1.561e^-4	0.328	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5850108	X_5850108_INS [dm3] X_5956075_INS [dm6]	G	GAT	1.561e^-4	0.328	INTRON CG6067
2L	12854030	2L_12854030_SNP [dm3] 2L_12854030_SNP [dm6]	C	G	1.566e^-4	0.328	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16571455	2L_16571455_SNP [dm3] 2L_16571455_SNP [dm6]	G	A	1.568e^-4	0.328	INTRON CG42389
3L	9115264	3L_9115264_SNP [dm3] 3L_9122164_SNP [dm6]	C	G	1.571e^-4	0.328	INTRON bol
2L	5432414	2L_5432414_SNP [dm3] 2L_5432414_SNP [dm6]	A	G	1.572e^-4	0.328	UPSTREAM CR43714 EXON CR43713
2L	21860539	2L_21860539_SNP [dm3] 2L_21860539_SNP [dm6]	T	C	1.572e^-4	0.328	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11631714	2L_11631714_SNP [dm3] 2L_11631714_SNP [dm6]	A	T	1.572e^-4	0.328	INTERGENIC
X	16612808	X_16612808_SNP [dm3] X_16718775_SNP [dm6]	T	C	1.573e^-4	0.328	INTRON CG34325
3L	7864332	3L_7864332_SNP [dm3] 3L_7871232_SNP [dm6]	G	T	1.574e^-4	0.328	INTRON CG32365
2L	167117	2L_167117_SNP [dm3] 2L_167117_SNP [dm6]	T	A	1.574e^-4	0.328	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21858454	2L_21858454_SNP [dm3] 2L_21858454_SNP [dm6]	T	C	1.592e^-4	0.33	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17338805	3R_17338805_SNP [dm3] 3R_21513083_SNP [dm6]	C	A	1.593e^-4	0.33	DOWNSTREAM C15 INTERGENIC
2L	2706618	2L_2706618_SNP [dm3] 2L_2706618_SNP [dm6]	C	G	1.595e^-4	0.33	INTRON CG31690
2L	12097475	2L_12097475_SNP [dm3] 2L_12097475_SNP [dm6]	T	G	1.596e^-4	0.33	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14112786	2R_14112786_SNP [dm3] 2R_18225281_SNP [dm6]	C	T	1.597e^-4	0.33	INTERGENIC
2R	16326386	2R_16326386_SNP [dm3] 2R_20438881_SNP [dm6]	A	C	1.599e^-4	0.33	INTRON CG12484
4	583912	4_583912_DEL [dm3] 4_563286_DEL [dm6]	ATATTAGTGTATATGTATGT...	A	1.600e^-4	0.33	INTRON Pur-alpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3369481	2L_3369481_SNP [dm3] 2L_3369481_SNP [dm6]	G	A	1.601e^-4	0.33	UPSTREAM CG34394 INTRON CG34394
2R	7515914	2R_7515914_INS [dm3] 2R_11628409_INS [dm6]	T	TAAAGT	1.601e^-4	0.33	INTRON CG9005	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16896285	3L_16896285_SNP [dm3] 3L_16903185_SNP [dm6]	A	G	1.605e^-4	0.33	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt
2L	12869950	2L_12869950_INS [dm3] 2L_12869950_INS [dm6]	A	GC	1.609e^-4	0.331	INTERGENIC
3L	10300434	3L_10300434_SNP [dm3] 3L_10307334_SNP [dm6]	C	A	1.610e^-4	0.331	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1620989	2L_1620989_SNP [dm3] 2L_1620989_SNP [dm6]	A	T	1.612e^-4	0.331	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8180305	2L_8180305_SNP [dm3] 2L_8180305_SNP [dm6]	C	T	1.616e^-4	0.331	SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
X	5910842	X_5910842_SNP [dm3] X_6016809_SNP [dm6]	T	C	1.619e^-4	0.331	INTERGENIC
2L	16166888	2L_16166888_INS [dm3] 2L_16166888_INS [dm6]	C	CC	1.620e^-4	0.331	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
2L	3391366	2L_3391366_DEL [dm3] 2L_3391366_DEL [dm6]	CCCTTC	GAA	1.626e^-4	0.332	INTERGENIC
2L	10792192	2L_10792192_SNP [dm3] 2L_10792192_SNP [dm6]	A	C	1.633e^-4	0.332	DOWNSTREAM CG31870 INTRON CG31869
2L	10792195	2L_10792195_SNP [dm3] 2L_10792195_SNP [dm6]	A	T	1.633e^-4	0.332	DOWNSTREAM CG31870 INTRON CG31869
3L	8437780	3L_8437780_SNP [dm3] 3L_8444680_SNP [dm6]	T	A	1.633e^-4	0.332	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7864091	3L_7864091_SNP [dm3] 3L_7870991_SNP [dm6]	G	A	1.636e^-4	0.332	INTRON CG32365
2L	21820320	2L_21820320_SNP [dm3] 2L_21820320_SNP [dm6]	A	T	1.638e^-4	0.332	EXON CR44786
2R	9966146	2R_9966146_SNP [dm3] 2R_14078641_SNP [dm6]	G	C	1.639e^-4	0.332	INTRON Prosap
2L	8181765	2L_8181765_SNP [dm3] 2L_8181765_SNP [dm6]	C	T	1.640e^-4	0.332	DOWNSTREAM Piezo INTRON Piezo
2L	5185073	2L_5185073_SNP [dm3] 2L_5185073_SNP [dm6]	C	T	1.642e^-4	0.333	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18219557	2L_18219557_SNP [dm3] 2L_18219557_SNP [dm6]	G	A	1.643e^-4	0.333	INTRON CG42750
2L	20092336	2L_20092336_SNP [dm3] 2L_20092336_SNP [dm6]	A	C	1.647e^-4	0.333	NON_SYNONYMOUS_CODING CG10721 UPSTREAM CG10747 DOWNSTREAM Taf13	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25404976	3R_25404976_SNP [dm3] 3R_29579254_SNP [dm6]	C	T	1.649e^-4	0.333	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3389710	2L_3389710_DEL [dm3] 2L_3389710_DEL [dm6]	TT	T	1.651e^-4	0.333	EXON CR44791
2L	16132381	2L_16132381_SNP [dm3] 2L_16132381_SNP [dm6]	A	T	1.655e^-4	0.333	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15467460	2L_15467460_SNP [dm3] 2L_15467460_SNP [dm6]	T	A	1.656e^-4	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10619161	2R_10619161_SNP [dm3] 2R_14731656_SNP [dm6]	T	G	1.657e^-4	0.333	INTERGENIC
3L	10663485	3L_10663485_SNP [dm3] 3L_10670385_SNP [dm6]	C	A	1.657e^-4	0.333	INTRON simj	TF binding site BDTNP1_TFBS_dl
3R	26098786	3R_26098786_SNP [dm3] 3R_30273064_SNP [dm6]	A	T	1.658e^-4	0.333	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7924798	3L_7924798_SNP [dm3] 3L_7931698_SNP [dm6]	C	T	1.660e^-4	0.333	INTRON syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6752827	2L_6752827_SNP [dm3] 2L_6752827_SNP [dm6]	A	T	1.665e^-4	0.333	INTRON CG11221
2L	9236058	2L_9236058_SNP [dm3] 2L_9236058_SNP [dm6]	G	T	1.666e^-4	0.333	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	12098187	2L_12098187_SNP [dm3] 2L_12098187_SNP [dm6]	A	T	1.669e^-4	0.333	DOWNSTREAM Mt2 INTRON Ced-12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	16802755	2L_16802755_SNP [dm3] 2L_16802755_SNP [dm6]	G	C	1.669e^-4	0.333	SYNONYMOUS_CODING CG13280	TF binding site mE1_TFBS_chinmo
3L	16876681	3L_16876681_SNP [dm3] 3L_16883581_SNP [dm6]	G	A	1.671e^-4	0.333	INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9948927	2L_9948927_SNP [dm3] 2L_9948927_SNP [dm6]	C	A	1.672e^-4	0.333	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12637725	3L_12637725_SNP [dm3] 3L_12644625_SNP [dm6]	C	T	1.675e^-4	0.333	INTRON CR32111	regulatory region REDfly_CRMs
2L	18432382	2L_18432382_SNP [dm3] 2L_18432382_SNP [dm6]	A	G	1.676e^-4	0.333	INTERGENIC
3L	16876680	3L_16876680_SNP [dm3] 3L_16883580_SNP [dm6]	A	T	1.682e^-4	0.333	INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1826202	2L_1826202_SNP [dm3] 2L_1826202_SNP [dm6]	G	T	1.686e^-4	0.333	UTR_5_PRIME CG31664
2L	1449812	2L_1449812_SNP [dm3] 2L_1449812_SNP [dm6]	T	A	1.686e^-4	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	19457042	3L_19457042_SNP [dm3] 3L_19463942_SNP [dm6]	A	G	1.687e^-4	0.333	DOWNSTREAM CG14095 INTERGENIC
2L	3109220	2L_3109220_SNP [dm3] 2L_3109220_SNP [dm6]	G	C	1.687e^-4	0.333	UPSTREAM PpD6 INTRON toc	TF binding site mE1_TFBS_inv
2L	5822531	2L_5822531_INS [dm3] 2L_5822531_INS [dm6]	G	GG	1.690e^-4	0.333	INTERGENIC
2L	7617061	2L_7617061_SNP [dm3] 2L_7617061_SNP [dm6]	C	A	1.695e^-4	0.333	DOWNSTREAM CG6739 INTERGENIC
X	22239887	X_22239887_SNP [dm3] X_22838051_SNP [dm6]	C	G	1.698e^-4	0.333	INTRON fog & 1 other	transposable element FlyBase
2L	16526396	2L_16526396_SNP [dm3] 2L_16526396_SNP [dm6]	A	G	1.700e^-4	0.333	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	5277867	2L_5277867_SNP [dm3] 2L_5277867_SNP [dm6]	T	A	1.701e^-4	0.333	UPSTREAM Bsg25D & 1 other INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9312331	3R_9312331_INS [dm3] 3R_13486609_INS [dm6]	T	TT	1.702e^-4	0.333	INTERGENIC
X	7438978	X_7438978_SNP [dm3] X_7544945_SNP [dm6]	G	A	1.702e^-4	0.333	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	15869993	X_15869993_SNP [dm3] X_15975960_SNP [dm6]	A	G	1.702e^-4	0.333	UPSTREAM CG42766 INTRON Or13a
2L	766713	2L_766713_SNP [dm3] 2L_766713_SNP [dm6]	C	G	1.703e^-4	0.333	INTERGENIC
2L	11631910	2L_11631910_SNP [dm3] 2L_11631910_SNP [dm6]	C	T	1.706e^-4	0.333	INTERGENIC
2L	8223917	2L_8223917_SNP [dm3] 2L_8223917_SNP [dm6]	T	C	1.710e^-4	0.333	SYNONYMOUS_CODING Pvr
X	10918574	X_10918574_SNP [dm3] X_11024541_SNP [dm6]	C	A	1.712e^-4	0.333	INTRON CG42339
2L	5185388	2L_5185388_SNP [dm3] 2L_5185388_SNP [dm6]	C	A	1.714e^-4	0.333	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10619145	2R_10619145_SNP [dm3] 2R_14731640_SNP [dm6]	C	T	1.720e^-4	0.333	INTERGENIC
2L	9838804	2L_9838804_SNP [dm3] 2L_9838804_SNP [dm6]	A	C	1.723e^-4	0.333	INTRON nAChRalpha6
2R	17473629	2R_17473629_SNP [dm3] 2R_21586124_SNP [dm6]	C	G	1.724e^-4	0.333	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17473630	2R_17473630_SNP [dm3] 2R_21586125_SNP [dm6]	C	G	1.724e^-4	0.333	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9336735	3L_9336735_SNP [dm3] 3L_9343635_SNP [dm6]	A	T	1.726e^-4	0.333	UPSTREAM PGRP-LC INTRON PGRP-LC
2L	18432375	2L_18432375_SNP [dm3] 2L_18432375_SNP [dm6]	A	G	1.726e^-4	0.333	INTERGENIC
2L	12869953	2L_12869953_SNP [dm3] 2L_12869953_SNP [dm6]	G	A	1.726e^-4	0.333	INTERGENIC
2L	9336669	2L_9336669_SNP [dm3] 2L_9336669_SNP [dm6]	C	T	1.730e^-4	0.333	INTRON Eaat1
2L	10815091	2L_10815091_SNP [dm3] 2L_10815091_SNP [dm6]	G	A	1.731e^-4	0.333	INTRON Nos
2L	15002055	2L_15002055_SNP [dm3] 2L_15002055_SNP [dm6]	G	T	1.735e^-4	0.333	INTERGENIC
3L	9672778	3L_9672778_SNP [dm3] 3L_9679678_SNP [dm6]	T	A	1.735e^-4	0.333	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	6254093	X_6254093_SNP [dm3] X_6360060_SNP [dm6]	C	T	1.736e^-4	0.333	SYNONYMOUS_CODING kdn	TF binding site BDTNP1_TFBS_da
3R	15448752	3R_15448752_SNP [dm3] 3R_19623030_SNP [dm6]	A	G	1.736e^-4	0.333	INTRON CG6231
2R	3143547	2R_3143547_SNP [dm3] 2R_7256042_SNP [dm6]	T	C	1.738e^-4	0.333	EXON CR45280
2L	4351497	2L_4351497_SNP [dm3] 2L_4351497_SNP [dm6]	C	A	1.741e^-4	0.333	DOWNSTREAM CR44700 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7864317	3L_7864317_SNP [dm3] 3L_7871217_SNP [dm6]	T	C	1.742e^-4	0.333	INTRON CG32365
2L	10814374	2L_10814374_SNP [dm3] 2L_10814374_SNP [dm6]	C	T	1.742e^-4	0.333	INTRON Nos
3R	9990697	3R_9990697_SNP [dm3] 3R_14164975_SNP [dm6]	C	A	1.743e^-4	0.333	DOWNSTREAM Dop1R1 INTERGENIC
2L	10816110	2L_10816110_SNP [dm3] 2L_10816110_SNP [dm6]	G	A	1.744e^-4	0.333	SYNONYMOUS_CODING Nos
2L	11406592	2L_11406592_SNP [dm3] 2L_11406592_SNP [dm6]	T	C	1.746e^-4	0.334	INTERGENIC	regulatory region REDfly_CRMs
2R	5304407	2R_5304407_SNP [dm3] 2R_9416902_SNP [dm6]	C	T	1.749e^-4	0.334	SYNONYMOUS_CODING wun2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	10577449	2L_10577449_SNP [dm3] 2L_10577449_SNP [dm6]	G	A	1.750e^-4	0.334	NON_SYNONYMOUS_CODING w-cup INTRON Trim9	TF binding site mE1_TFBS_sens
X	9279742	X_9279742_SNP [dm3] X_9385709_SNP [dm6]	A	G	1.754e^-4	0.334	INTRON mgl
3R	10576585	3R_10576585_INS [dm3] 3R_14750863_INS [dm6]	C	CCT	1.759e^-4	0.334	DOWNSTREAM CG7362 INTRON jvl & 1 other
2L	12869922	2L_12869922_SNP [dm3] 2L_12869922_SNP [dm6]	A	T	1.760e^-4	0.334	INTERGENIC
2L	706978	2L_706978_SNP [dm3] 2L_706978_SNP [dm6]	T	C	1.762e^-4	0.334	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA
X	2549518	X_2549518_INS [dm3] X_2655485_INS [dm6]	T	TTT	1.765e^-4	0.334	INTRON sgg
2L	19503996	2L_19503996_SNP [dm3] 2L_19503996_SNP [dm6]	A	G	1.768e^-4	0.334	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19504080	2L_19504080_SNP [dm3] 2L_19504080_SNP [dm6]	A	G	1.768e^-4	0.334	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9587189	2L_9587189_DEL [dm3] 2L_9587189_DEL [dm6]	AA	A	1.769e^-4	0.334	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	12637736	3L_12637736_SNP [dm3] 3L_12644636_SNP [dm6]	G	A	1.770e^-4	0.334	INTRON CR32111	regulatory region REDfly_CRMs
2R	9141759	2R_9141759_SNP [dm3] 2R_13254254_SNP [dm6]	G	T	1.774e^-4	0.335	UTR_5_PRIME CG4714 DOWNSTREAM CR44343	TF binding site mE1_TFBS_cad
X	6003676	X_6003676_SNP [dm3] X_6109643_SNP [dm6]	A	G	1.775e^-4	0.335	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1620878	2L_1620878_SNP [dm3] 2L_1620878_SNP [dm6]	G	C	1.778e^-4	0.335	EXON CR44603	TF binding site BDTNP1_TFBS_dl
X	12272130	X_12272130_SNP [dm3] X_12378097_SNP [dm6]	G	C	1.779e^-4	0.335	UPSTREAM Ir11a INTERGENIC
2R	17473635	2R_17473635_SNP [dm3] 2R_21586130_SNP [dm6]	G	A	1.782e^-4	0.335	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	167108	2L_167108_SNP [dm3] 2L_167108_SNP [dm6]	G	A	1.791e^-4	0.336	INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1746835	2R_1746835_SNP [dm3] 2R_5859330_SNP [dm6]	G	A	1.794e^-4	0.337	UTR_3_PRIME dpr12

Missing results

By genomic position
Variant impact
Gene name

TotalVariants_2L phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results