DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.551e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	4.9298	0.085

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4540 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6293706	3L_6293706_INS [dm3] 3L_6300606_INS [dm6]	T	TAG	9.333e^-9	0.018	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27235324	3R_27235324_DEL [dm3] 3R_31409602_DEL [dm6]	TAAACGTATTT...	T	2.500e^-8	0.018	INTRON Gprk2
X	11479413	X_11479413_SNP [dm3] X_11585380_SNP [dm6]	C	G	2.832e^-8	0.018	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6678460	3R_6678460_DEL [dm3] 3R_10852738_DEL [dm6]	AA	G	4.739e^-8	0.022	UTR_5_PRIME CG4565 DOWNSTREAM CG42394 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	19496052	X_19496052_INS [dm3] X_19602019_INS [dm6]	T	TTT	9.101e^-8	0.034	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	1216328	2R_1216328_INS [dm3] 2R_5328823_INS [dm6]	G	GTTGTGCAGTAGG...	1.153e^-7	0.036	INTRON sxc
3R	15892162	3R_15892162_SNP [dm3] 3R_20066440_SNP [dm6]	A	G	1.764e^-7	0.043	INTERGENIC
3L	473509	3L_473509_INS [dm3] 3L_473509_INS [dm6]	C	CTTTTC	1.974e^-7	0.043	INTRON klar
X	17481255	X_17481255_DEL [dm3] X_17587222_DEL [dm6]	TACAT	T	2.413e^-7	0.043	INTRON CG12991
3L	18213458	3L_18213458_SNP [dm3] 3L_18220358_SNP [dm6]	G	T	2.515e^-7	0.043	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
X	7599741	X_7599741_DEL [dm3] X_7705708_DEL [dm6]	AAA	A	2.530e^-7	0.043	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15892036	3R_15892036_SNP [dm3] 3R_20066314_SNP [dm6]	A	G	2.971e^-7	0.044	INTERGENIC
3L	6293700	3L_6293700_SNP [dm3] 3L_6300600_SNP [dm6]	T	A	3.430e^-7	0.044	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17635879	X_17635879_DEL [dm3] X_17741846_DEL [dm6]	CC	C	3.582e^-7	0.044	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18213468	3L_18213468_SNP [dm3] 3L_18220368_SNP [dm6]	A	G	4.302e^-7	0.044	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213472	3L_18213472_SNP [dm3] 3L_18220372_SNP [dm6]	T	A	4.302e^-7	0.044	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213459	3L_18213459_DEL [dm3] 3L_18220359_DEL [dm6]	GAACCA	G	4.376e^-7	0.044	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
X	11479401	X_11479401_SNP [dm3] X_11585368_SNP [dm6]	G	A	4.609e^-7	0.044	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	4.674e^-7	0.044	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18329829	3L_18329829_INS [dm3] 3L_18336729_INS [dm6]	T	TT	4.697e^-7	0.044	INTERGENIC
X	7600034	X_7600034_DEL [dm3] X_7706001_DEL [dm6]	TT	T	5.355e^-7	0.048	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21364686	X_21364686_INS [dm3] X_21493659_INS [dm6]	A	ACATA	5.633e^-7	0.048	INTERGENIC
3L	12056313	3L_12056313_DEL [dm3] 3L_12063213_DEL [dm6]	CC	C	6.047e^-7	0.049	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18730258	3L_18730258_SNP [dm3] 3L_18737158_SNP [dm6]	G	A	6.396e^-7	0.05	INTERGENIC
3L	6293702	3L_6293702_SNP [dm3] 3L_6300602_SNP [dm6]	T	G	7.867e^-7	0.054	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12367468	2R_12367468_INS [dm3] 2R_16479963_INS [dm6]	C	CA	7.910e^-7	0.054	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10072028	2L_10072028_SNP [dm3] 2L_10072028_SNP [dm6]	G	C	8.068e^-7	0.054	INTRON CG44153
X	21946825	X_21946825_INS [dm3] X_22544989_INS [dm6]	G	GG	8.377e^-7	0.054	UPSTREAM CG17599 INTERGENIC
2R	1141073	2R_1141073_INS [dm3] 2R_5253568_INS [dm6]	G	GG	8.600e^-7	0.054	UPSTREAM CR41443 INTERGENIC
2R	3268579	2R_3268579_DEL [dm3] 2R_7381074_DEL [dm6]	CC	C	8.662e^-7	0.054	INTRON Dscam1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15882866	3R_15882866_SNP [dm3] 3R_20057144_SNP [dm6]	G	A	9.313e^-7	0.056	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16519235	X_16519235_DEL [dm3] X_16625202_DEL [dm6]	AA	A	1.013e^-6	0.056	UTR_3_PRIME Rok INTRON Rok
3R	15892179	3R_15892179_SNP [dm3] 3R_20066457_SNP [dm6]	A	T	1.070e^-6	0.056	INTERGENIC
2L	21070330	2L_21070330_SNP [dm3] 2L_21070330_SNP [dm6]	A	G	1.094e^-6	0.056	UPSTREAM CG9265 INTRON CG9265
3R	15877380	3R_15877380_SNP [dm3] 3R_20051658_SNP [dm6]	T	A	1.164e^-6	0.056	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	7682833	X_7682833_SNP [dm3] X_7788800_SNP [dm6]	A	T	1.182e^-6	0.056	INTERGENIC
3R	15892155	3R_15892155_SNP [dm3] 3R_20066433_SNP [dm6]	G	A	1.186e^-6	0.056	INTERGENIC
3R	15892266	3R_15892266_SNP [dm3] 3R_20066544_SNP [dm6]	G	A	1.199e^-6	0.056	INTERGENIC
3R	25605188	3R_25605188_SNP [dm3] 3R_29779466_SNP [dm6]	C	T	1.222e^-6	0.056	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26174550	3R_26174550_SNP [dm3] 3R_30348828_SNP [dm6]	A	T	1.265e^-6	0.056	INTRON hdc
3R	15892115	3R_15892115_SNP [dm3] 3R_20066393_SNP [dm6]	T	A	1.277e^-6	0.056	INTERGENIC
X	7682834	X_7682834_SNP [dm3] X_7788801_SNP [dm6]	T	G	1.301e^-6	0.056	INTERGENIC
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	1.306e^-6	0.056	SYNONYMOUS_CODING CG14857
X	12939490	X_12939490_DEL [dm3] X_13045457_DEL [dm6]	TG	T	1.369e^-6	0.056	INTRON rad
3L	18213474	3L_18213474_SNP [dm3] 3L_18220374_SNP [dm6]	C	G	1.375e^-6	0.056	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3R	10140762	3R_10140762_SNP [dm3] 3R_14315040_SNP [dm6]	T	C	1.410e^-6	0.056	SYNONYMOUS_CODING Crz UPSTREAM pr-set7 DOWNSTREAM CG31321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4336566	2L_4336566_DEL [dm3] 2L_4336566_DEL [dm6]	AAA	A	1.415e^-6	0.056	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14078423	2L_14078423_SNP [dm3] 2L_14078423_SNP [dm6]	C	A	1.473e^-6	0.056	INTRON nAChRalpha5
2R	18524741	2R_18524741_INS [dm3] 2R_22637236_INS [dm6]	T	TAT	1.478e^-6	0.056	UPSTREAM bonsai INTRON Cdk9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15892071	3R_15892071_INS [dm3] 3R_20066349_INS [dm6]	A	AA	1.496e^-6	0.056	INTERGENIC
2L	9320520	2L_9320520_INS [dm3] 2L_9320520_INS [dm6]	C	CTTGAA	1.581e^-6	0.057	INTERGENIC
2R	15912687	2R_15912687_SNP [dm3] 2R_20025182_SNP [dm6]	G	A	1.589e^-6	0.057	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18213445	3L_18213445_MNP [dm3] 3L_18220345_MNP [dm6]	CAT	TGG	1.603e^-6	0.057	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
X	13365303	X_13365303_INS [dm3] X_13471270_INS [dm6]	T	TATGGTGTT	1.684e^-6	0.058	INTRON Neto
3R	15892122	3R_15892122_SNP [dm3] 3R_20066400_SNP [dm6]	T	A	1.692e^-6	0.058	INTERGENIC
3R	15892176	3R_15892176_SNP [dm3] 3R_20066454_SNP [dm6]	T	C	1.729e^-6	0.058	INTERGENIC
3R	15892161	3R_15892161_SNP [dm3] 3R_20066439_SNP [dm6]	A	G	1.823e^-6	0.06	INTERGENIC
2R	19616121	2R_19616121_DEL [dm3] 2R_23728598_DEL [dm6]	GG	A	1.935e^-6	0.062	INTRON Sesn
3L	12107229	3L_12107229_SNP [dm3] 3L_12114129_SNP [dm6]	A	T	1.975e^-6	0.062	INTERGENIC
3R	15891978	3R_15891978_SNP [dm3] 3R_20066256_SNP [dm6]	A	T	1.998e^-6	0.062	INTERGENIC
3R	15891906	3R_15891906_SNP [dm3] 3R_20066184_SNP [dm6]	G	T	2.081e^-6	0.064	INTERGENIC
X	19600727	X_19600727_INS [dm3] X_19706694_INS [dm6]	T	TGT	2.214e^-6	0.067	UTR_3_PRIME meso18E DOWNSTREAM CG14230	TF binding site mE1_TFBS_HSA
X	8397999	X_8397999_DEL [dm3] X_8503966_DEL [dm6]	TT	T	2.265e^-6	0.067	INTRON CG33181
X	11368748	X_11368748_SNP [dm3] X_11474715_SNP [dm6]	T	A	2.274e^-6	0.067	INTRON CG43155
3R	15891982	3R_15891982_SNP [dm3] 3R_20066260_SNP [dm6]	G	C	2.364e^-6	0.068	INTERGENIC
3L	21136719	3L_21136719_SNP [dm3] 3L_21143619_SNP [dm6]	T	C	2.389e^-6	0.068	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6293695	3L_6293695_INS [dm3] 3L_6300595_INS [dm6]	A	AAAAAAAAC	2.455e^-6	0.069	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15891270	3R_15891270_SNP [dm3] 3R_20065548_SNP [dm6]	C	T	2.530e^-6	0.07	INTERGENIC
X	20966354	X_20966354_DEL [dm3] X_21095327_DEL [dm6]	ACA	A	2.709e^-6	0.073	DOWNSTREAM CG15446 INTRON stg1 & 1 other
3R	14974159	3R_14974159_SNP [dm3] 3R_19148437_SNP [dm6]	G	A	2.740e^-6	0.073	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	22520225	3R_22520225_INS [dm3] 3R_26694503_INS [dm6]	G	GTTGG	2.755e^-6	0.073	UPSTREAM TwdlQ INTERGENIC
3L	6317088	3L_6317088_SNP [dm3] 3L_6323988_SNP [dm6]	T	C	2.929e^-6	0.076	INTERGENIC
3R	15892601	3R_15892601_SNP [dm3] 3R_20066879_SNP [dm6]	G	A	3.254e^-6	0.084	INTERGENIC
3R	15891876	3R_15891876_SNP [dm3] 3R_20066154_SNP [dm6]	T	A	3.536e^-6	0.088	INTERGENIC
3R	15892009	3R_15892009_SNP [dm3] 3R_20066287_SNP [dm6]	C	T	3.568e^-6	0.088	INTERGENIC
2R	18133151	2R_18133151_SNP [dm3] 2R_22245646_SNP [dm6]	G	C	3.571e^-6	0.088	INTRON dve
3R	15892378	3R_15892378_SNP [dm3] 3R_20066656_SNP [dm6]	T	A	3.701e^-6	0.09	INTERGENIC
3R	12185008	3R_12185008_DEL [dm3] 3R_16359286_DEL [dm6]	TT	T	3.791e^-6	0.09	UTR_5_PRIME CG17931 INTRON CG42446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	848071	3R_848071_INS [dm3] 3R_5022349_INS [dm6]	T	TTT	3.811e^-6	0.09	DOWNSTREAM CR45585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4488608	X_4488608_DEL [dm3] X_4594575_DEL [dm6]	GCTTGGCATCG...	G	3.844e^-6	0.09	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	13692169	X_13692169_INS [dm3] X_13798136_INS [dm6]	A	AA	4.047e^-6	0.094	UPSTREAM CG10996 INTRON inaE
3R	20051147	3R_20051147_DEL [dm3] 3R_24225425_DEL [dm6]	GCTG	G	4.090e^-6	0.094	CODON_DELETION Spps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17636382	X_17636382_INS [dm3] X_17742349_INS [dm6]	C	CCTTGATTCTGC...	4.218e^-6	0.095	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3R	15711541	3R_15711541_SNP [dm3] 3R_19885819_SNP [dm6]	G	A	4.295e^-6	0.095	UTR_3_PRIME Pk92B DOWNSTREAM ninaE
3L	18730262	3L_18730262_SNP [dm3] 3L_18737162_SNP [dm6]	C	T	4.312e^-6	0.095	INTERGENIC
3L	18730260	3L_18730260_SNP [dm3] 3L_18737160_SNP [dm6]	G	A	4.339e^-6	0.095	INTERGENIC
2L	12301408	2L_12301408_SNP [dm3] 2L_12301408_SNP [dm6]	G	A	4.404e^-6	0.095	INTRON aret
3L	14675527	3L_14675527_DEL [dm3] 3L_14682427_DEL [dm6]	ATTTTTCA	A	4.708e^-6	0.099	INTRON ome
3L	12107227	3L_12107227_SNP [dm3] 3L_12114127_SNP [dm6]	G	A	4.725e^-6	0.099	INTERGENIC
3R	12745509	3R_12745509_DEL [dm3] 3R_16919787_DEL [dm6]	CTGGT	C	4.735e^-6	0.099	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	15892073	3R_15892073_SNP [dm3] 3R_20066351_SNP [dm6]	C	G	4.932e^-6	0.102	INTERGENIC
3L	6293755	3L_6293755_SNP [dm3] 3L_6300655_SNP [dm6]	G	A	5.053e^-6	0.103	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18840695	3L_18840695_INS [dm3] 3L_18847595_INS [dm6]	T	TCTTA	5.122e^-6	0.103	INTERGENIC
2L	19715057	2L_19715057_DEL [dm3] 2L_19715057_DEL [dm6]	CACCGGGC	C	5.541e^-6	0.111	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	15890792	3R_15890792_SNP [dm3] 3R_20065070_SNP [dm6]	T	G	5.640e^-6	0.111	INTERGENIC
2L	10646906	2L_10646906_SNP [dm3] 2L_10646906_SNP [dm6]	T	A	5.745e^-6	0.112	SYNONYMOUS_CODING CG17097	TF binding site mE1_TFBS_inv mE1_TFBS_run
3R	15890913	3R_15890913_SNP [dm3] 3R_20065191_SNP [dm6]	T	C	5.940e^-6	0.113	INTERGENIC
2R	18133354	2R_18133354_SNP [dm3] 2R_22245849_SNP [dm6]	G	C	5.981e^-6	0.113	INTRON dve
3L	6317096	3L_6317096_SNP [dm3] 3L_6323996_SNP [dm6]	A	T	6.021e^-6	0.113	INTERGENIC
2R	14609460	2R_14609460_SNP [dm3] 2R_18721955_SNP [dm6]	A	T	6.120e^-6	0.113	INTRON Hs3st-A
3L	6293688	3L_6293688_SNP [dm3] 3L_6300588_SNP [dm6]	A	T	6.132e^-6	0.113	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15876868	3R_15876868_SNP [dm3] 3R_20051146_SNP [dm6]	T	G	6.136e^-6	0.113	INTRON CG17193
3R	15877377	3R_15877377_SNP [dm3] 3R_20051655_SNP [dm6]	C	A	6.326e^-6	0.115	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15886276	3R_15886276_SNP [dm3] 3R_20060554_SNP [dm6]	A	G	6.453e^-6	0.116	UPSTREAM CG4390 INTERGENIC
2R	5201035	2R_5201035_INS [dm3] 2R_9313530_INS [dm6]	C	CC	6.530e^-6	0.116	UPSTREAM mir-987 INTRON CG13739 & 1 other
X	16895812	X_16895812_INS [dm3] X_17001779_INS [dm6]	T	TTTACCCTT	6.581e^-6	0.116	INTRON CG45002
2R	11769496	2R_11769496_DEL [dm3] 2R_15881991_DEL [dm6]	TATTC	T	6.703e^-6	0.117	INTRON sli
3L	975783	3L_975783_SNP [dm3] 3L_975783_SNP [dm6]	A	G	6.808e^-6	0.118	INTRON Glut1
3R	10628954	3R_10628954_SNP [dm3] 3R_14803232_SNP [dm6]	C	T	6.905e^-6	0.118	SPLICE_SITE_REGION CG14857 DOWNSTREAM btsz INTRON CG14857	TF binding site mE1_TFBS_cad
2R	18122805	2R_18122805_SNP [dm3] 2R_22235300_SNP [dm6]	G	T	6.914e^-6	0.118	DOWNSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17788772	3R_17788772_SNP [dm3] 3R_21963050_SNP [dm6]	G	T	7.013e^-6	0.118	INTRON Eip93F
3R	12853289	3R_12853289_SNP [dm3] 3R_17027567_SNP [dm6]	T	C	7.096e^-6	0.118	SPLICE_SITE_REGION Pxd SYNONYMOUS_CODING Pxd
2R	3657739	2R_3657739_INS [dm3] 2R_7770234_INS [dm6]	A	ATGTAGATACATTCA...	7.141e^-6	0.118	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8983805	X_8983805_DEL [dm3] X_9089772_DEL [dm6]	CATGGACTCCGATTTCGCC...	C	7.195e^-6	0.118	DOWNSTREAM CG6999 INTRON CG7033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	15892120	3R_15892120_SNP [dm3] 3R_20066398_SNP [dm6]	T	A	7.320e^-6	0.119	INTERGENIC
X	16679364	X_16679364_DEL [dm3] X_16785331_DEL [dm6]	CGGATGTTTCTGAACGCAAA...	C	7.454e^-6	0.119	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
2R	20348873	2R_20348873_MNP [dm3] 2R_24461350_MNP [dm6]	TGG	AAA	7.459e^-6	0.119	INTRON CG13579
3L	8457906	3L_8457906_SNP [dm3] 3L_8464806_SNP [dm6]	A	G	7.508e^-6	0.119	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17915099	3L_17915099_SNP [dm3] 3L_17921999_SNP [dm6]	T	G	7.588e^-6	0.12	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10510862	2L_10510862_SNP [dm3] 2L_10510862_SNP [dm6]	C	A	7.708e^-6	0.12	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other
X	13676317	X_13676317_SNP [dm3] X_13782284_SNP [dm6]	C	G	7.738e^-6	0.12	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14078418	2L_14078418_SNP [dm3] 2L_14078418_SNP [dm6]	C	T	7.781e^-6	0.12	INTRON nAChRalpha5
3L	16967013	3L_16967013_SNP [dm3] 3L_16973913_SNP [dm6]	C	G	8.171e^-6	0.125	INTRON Exn
X	7997438	X_7997438_DEL [dm3] X_8103405_DEL [dm6]	CTTCGCC	C	8.261e^-6	0.125	UTR_3_PRIME Gclc
3R	15892199	3R_15892199_SNP [dm3] 3R_20066477_SNP [dm6]	T	G	8.344e^-6	0.125	INTERGENIC
3R	11955831	3R_11955831_SNP [dm3] 3R_16130109_SNP [dm6]	C	G	8.363e^-6	0.125	INTRON Sb
3R	25486788	3R_25486788_INS [dm3] 3R_29661066_INS [dm6]	G	GCGAG	8.508e^-6	0.125	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	15877779	3R_15877779_SNP [dm3] 3R_20052057_SNP [dm6]	T	A	8.558e^-6	0.125	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	17299930	3R_17299930_SNP [dm3] 3R_21474208_SNP [dm6]	T	A	8.587e^-6	0.125	INTERGENIC
3R	19895004	3R_19895004_SNP [dm3] 3R_24069282_SNP [dm6]	T	C	8.822e^-6	0.127	INTRON 4EHP
2L	2429475	2L_2429475_INS [dm3] 2L_2429475_INS [dm6]	T	TCAAT	8.920e^-6	0.128	INTRON dpp
3R	25604867	3R_25604867_SNP [dm3] 3R_29779145_SNP [dm6]	A	C	8.986e^-6	0.128	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
X	7682827	X_7682827_SNP [dm3] X_7788794_SNP [dm6]	T	C	9.301e^-6	0.13	INTERGENIC
3L	10206960	3L_10206960_DEL [dm3] 3L_10213860_DEL [dm6]	GTGATTGG	G	9.330e^-6	0.13	INTERGENIC
3L	12107232	3L_12107232_SNP [dm3] 3L_12114132_SNP [dm6]	G	C	9.339e^-6	0.13	INTERGENIC
3L	18213441	3L_18213441_MNP [dm3] 3L_18220341_MNP [dm6]	GGG	TTT	9.594e^-6	0.132	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	15571950	3L_15571950_DEL [dm3] 3L_15578850_DEL [dm6]	ACA	A	1.007e^-5	0.135	UTR_3_PRIME mrn DOWNSTREAM CG16979	TF binding site mE1_TFBS_cad
X	8766474	X_8766474_DEL [dm3] X_8872441_DEL [dm6]	AA	A	1.017e^-5	0.135	UTR_3_PRIME CG12075 DOWNSTREAM Moe & 1 other
X	13676358	X_13676358_SNP [dm3] X_13782325_SNP [dm6]	C	G	1.021e^-5	0.135	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12282959	2L_12282959_SNP [dm3] 2L_12282959_SNP [dm6]	T	G	1.022e^-5	0.135	INTRON aret
2L	15865530	2L_15865530_MNP [dm3] 2L_15865530_MNP [dm6]	AAC	CCT	1.036e^-5	0.135	UPSTREAM CG42792 INTERGENIC
3R	15892611	3R_15892611_INS [dm3] 3R_20066889_INS [dm6]	A	AT	1.045e^-5	0.135	INTERGENIC
2L	12185743	2L_12185743_DEL [dm3] 2L_12185743_DEL [dm6]	AGCTATACAC	A	1.058e^-5	0.135	INTRON aret	TF binding site BDTNP1_TFBS_dl
3L	13534493	3L_13534493_SNP [dm3] 3L_13541393_SNP [dm6]	G	A	1.058e^-5	0.135	INTRON bru-3
X	12698800	X_12698800_DEL [dm3] X_12804767_DEL [dm6]	ATTACAATACAATACAATAC...	CC	1.060e^-5	0.135	DOWNSTREAM CG3775 INTRON Pde9
3R	14166036	3R_14166036_SNP [dm3] 3R_18340314_SNP [dm6]	A	T	1.064e^-5	0.135	INTRON CG15803
2L	19806150	2L_19806150_SNP [dm3] 2L_19806150_SNP [dm6]	A	G	1.064e^-5	0.135	INTRON sick
3R	10462772	3R_10462772_SNP [dm3] 3R_14637050_SNP [dm6]	A	T	1.080e^-5	0.135	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13676316	X_13676316_SNP [dm3] X_13782283_SNP [dm6]	A	G	1.081e^-5	0.135	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18721960	X_18721960_DEL [dm3] X_18827927_DEL [dm6]	GGG	G	1.081e^-5	0.135	UTR_3_PRIME CG42450
3R	15890709	3R_15890709_SNP [dm3] 3R_20064987_SNP [dm6]	G	A	1.083e^-5	0.135	INTERGENIC
X	21813727	X_21813727_SNP [dm3] X_22411892_SNP [dm6]	A	T	1.102e^-5	0.135	INTERGENIC	transposable element FlyBase
X	7682831	X_7682831_SNP [dm3] X_7788798_SNP [dm6]	A	T	1.107e^-5	0.135	INTERGENIC
X	21813721	X_21813721_SNP [dm3] X_22411886_SNP [dm6]	G	A	1.111e^-5	0.135	INTERGENIC	transposable element FlyBase
3R	15876056	3R_15876056_SNP [dm3] 3R_20050334_SNP [dm6]	T	A	1.116e^-5	0.135	INTRON CG17193
X	15578111	X_15578111_SNP [dm3] X_15684078_SNP [dm6]	C	T	1.126e^-5	0.135	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15877853	3R_15877853_SNP [dm3] 3R_20052131_SNP [dm6]	A	C	1.132e^-5	0.135	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15344921	3R_15344921_SNP [dm3] 3R_19519199_SNP [dm6]	T	C	1.146e^-5	0.136	INTRON Dys
3R	14166037	3R_14166037_SNP [dm3] 3R_18340315_SNP [dm6]	T	A	1.155e^-5	0.136	INTRON CG15803
X	13676340	X_13676340_SNP [dm3] X_13782307_SNP [dm6]	C	G	1.166e^-5	0.137	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15892304	3R_15892304_SNP [dm3] 3R_20066582_SNP [dm6]	C	T	1.180e^-5	0.137	INTERGENIC
2R	20378584	2R_20378584_DEL [dm3] 2R_24491061_DEL [dm6]	TT	T	1.182e^-5	0.137	DOWNSTREAM CG13579 INTERGENIC
X	3665405	X_3665405_INS [dm3] X_3771372_INS [dm6]	G	GG	1.206e^-5	0.139	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3R	16997405	3R_16997405_SNP [dm3] 3R_21171683_SNP [dm6]	A	T	1.259e^-5	0.144	INTRON SNF4Agamma
3R	15894982	3R_15894982_SNP [dm3] 3R_20069260_SNP [dm6]	T	C	1.266e^-5	0.144	INTERGENIC
3R	15892011	3R_15892011_SNP [dm3] 3R_20066289_SNP [dm6]	A	T	1.271e^-5	0.144	INTERGENIC
2L	17404767	2L_17404767_SNP [dm3] 2L_17404767_SNP [dm6]	A	G	1.283e^-5	0.144	NON_SYNONYMOUS_CODING CLIP-190 DOWNSTREAM CLIP-190
3R	15875928	3R_15875928_SNP [dm3] 3R_20050206_SNP [dm6]	T	G	1.300e^-5	0.144	INTRON CG17193
3R	23185263	3R_23185263_INS [dm3] 3R_27359541_INS [dm6]	T	TCT	1.301e^-5	0.144	INTRON CG42534
2L	3217742	2L_3217742_DEL [dm3] 2L_3217742_DEL [dm6]	TA	T	1.330e^-5	0.146	INTERGENIC
3R	15892640	3R_15892640_SNP [dm3] 3R_20066918_SNP [dm6]	A	G	1.335e^-5	0.146	INTERGENIC
X	13676320	X_13676320_SNP [dm3] X_13782287_SNP [dm6]	A	T	1.339e^-5	0.146	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12107226	3L_12107226_SNP [dm3] 3L_12114126_SNP [dm6]	T	A	1.343e^-5	0.146	INTERGENIC
2R	18549477	2R_18549477_DEL [dm3] 2R_22661972_DEL [dm6]	TT	T	1.351e^-5	0.146	UTR_5_PRIME CG42566 DOWNSTREAM CG42565 & 2 others
3L	6571082	3L_6571082_INS [dm3] 3L_6577982_INS [dm6]	A	ACTA	1.360e^-5	0.146	INTRON CG18769 & 1 other
3L	4981535	3L_4981535_DEL [dm3] 3L_4981535_DEL [dm6]	GG	G	1.381e^-5	0.146	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
3L	18626730	3L_18626730_SNP [dm3] 3L_18633630_SNP [dm6]	T	G	1.385e^-5	0.146	INTRON MYPT-75D
3L	13534528	3L_13534528_INS [dm3] 3L_13541428_INS [dm6]	A	AGCGTA	1.390e^-5	0.146	INTRON bru-3
3R	15892694	3R_15892694_SNP [dm3] 3R_20066972_SNP [dm6]	T	C	1.395e^-5	0.146	INTERGENIC
3R	19447129	3R_19447129_SNP [dm3] 3R_23621407_SNP [dm6]	A	G	1.413e^-5	0.146	INTRON CG31145
3L	17025857	3L_17025857_DEL [dm3] 3L_17032757_DEL [dm6]	CTC	C	1.413e^-5	0.146	UPSTREAM Ilp8 & 1 other DOWNSTREAM CR43250 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15889001	3R_15889001_SNP [dm3] 3R_20063279_SNP [dm6]	C	A	1.438e^-5	0.147	INTERGENIC
3L	2951054	3L_2951054_INS [dm3] 3L_2951054_INS [dm6]	T	TTTGTTGCGGCTGCTGCAAC...	1.439e^-5	0.147	CODON_INSERTION CG32846 INTRON Shab
3R	15877457	3R_15877457_SNP [dm3] 3R_20051735_SNP [dm6]	G	A	1.460e^-5	0.149	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	14909030	3L_14909030_SNP [dm3] 3L_14915930_SNP [dm6]	G	T	1.466e^-5	0.149	INTRON DCX-EMAP
3L	18840698	3L_18840698_DEL [dm3] 3L_18847598_DEL [dm6]	TCACT	T	1.477e^-5	0.149	INTERGENIC
2L	12283056	2L_12283056_SNP [dm3] 2L_12283056_SNP [dm6]	G	T	1.487e^-5	0.149	INTRON aret
2R	18125696	2R_18125696_SNP [dm3] 2R_22238191_SNP [dm6]	T	A	1.507e^-5	0.149	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3383784	X_3383784_DEL [dm3] X_3489751_DEL [dm6]	AATATATCCA	A	1.512e^-5	0.149	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18133620	2R_18133620_SNP [dm3] 2R_22246115_SNP [dm6]	A	T	1.514e^-5	0.149	INTRON dve
3L	4740380	3L_4740380_DEL [dm3] 3L_4740380_DEL [dm6]	AGCCATA	A	1.518e^-5	0.149	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
X	4572184	X_4572184_SNP [dm3] X_4678151_SNP [dm6]	G	T	1.525e^-5	0.149	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15892521	3R_15892521_SNP [dm3] 3R_20066799_SNP [dm6]	G	A	1.546e^-5	0.15	INTERGENIC
2L	6355193	2L_6355193_INS [dm3] 2L_6355193_INS [dm6]	A	ATCA	1.552e^-5	0.15	UPSTREAM ppk7 INTRON ppk14
3R	15877845	3R_15877845_SNP [dm3] 3R_20052123_SNP [dm6]	C	T	1.574e^-5	0.151	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	1711319	2L_1711319_SNP [dm3] 2L_1711319_SNP [dm6]	T	A	1.580e^-5	0.151	UTR_3_PRIME mRpL48 & 1 other UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10523798	3L_10523798_INS [dm3] 3L_10530698_INS [dm6]	A	AA	1.586e^-5	0.151	INTRON A2bp1
3L	17803009	3L_17803009_DEL [dm3] 3L_17809909_DEL [dm6]	TT	T	1.603e^-5	0.152	UPSTREAM CG32191 INTRON cln3
2R	4157569	2R_4157569_DEL [dm3] 2R_8270064_DEL [dm6]	AT	C	1.616e^-5	0.152	UPSTREAM CG30371 INTERGENIC
3R	15889002	3R_15889002_SNP [dm3] 3R_20063280_SNP [dm6]	C	T	1.625e^-5	0.152	INTERGENIC
X	3333201	X_3333201_INS [dm3] X_3439168_INS [dm6]	T	TAT	1.629e^-5	0.152	INTRON CR44999 & 1 other
3R	19970509	3R_19970509_SNP [dm3] 3R_24144787_SNP [dm6]	A	G	1.656e^-5	0.154	INTRON Kal1	TF binding site BDTNP1_TFBS_dl
3L	10253110	3L_10253110_SNP [dm3] 3L_10260010_SNP [dm6]	T	G	1.674e^-5	0.155	INTERGENIC
3R	14759979	3R_14759979_SNP [dm3] 3R_18934257_SNP [dm6]	A	C	1.690e^-5	0.155	INTRON CG42613
3R	26070513	3R_26070513_DEL [dm3] 3R_30244791_DEL [dm6]	TGGAGAAT	T	1.694e^-5	0.155	INTRON CG9733	TF binding site mE1_TFBS_chinmo
2L	13946164	2L_13946164_SNP [dm3] 2L_13946164_SNP [dm6]	A	G	1.721e^-5	0.156	INTRON Ance-3 & 1 other
3R	15892593	3R_15892593_SNP [dm3] 3R_20066871_SNP [dm6]	G	T	1.732e^-5	0.156	INTERGENIC
3R	15723694	3R_15723694_SNP [dm3] 3R_19897972_SNP [dm6]	G	A	1.740e^-5	0.156	SYNONYMOUS_CODING CG4733 DOWNSTREAM CG4538 INTRON CG4538
2R	9506305	2R_9506305_INS [dm3] 2R_13618800_INS [dm6]	C	CCGG	1.750e^-5	0.156	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10253088	3L_10253088_SNP [dm3] 3L_10259988_SNP [dm6]	G	T	1.755e^-5	0.156	INTERGENIC
2R	14609466	2R_14609466_SNP [dm3] 2R_18721961_SNP [dm6]	T	C	1.761e^-5	0.156	INTRON Hs3st-A
3L	1024502	3L_1024502_SNP [dm3] 3L_1024502_SNP [dm6]	C	T	1.763e^-5	0.156	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9437491	X_9437491_DEL [dm3] X_9543458_DEL [dm6]	ATATGTTGATAAACGTATT...	A	1.776e^-5	0.156	INTRON CG32700
X	20356166	X_20356166_DEL [dm3] X_20485139_DEL [dm6]	TT	T	1.831e^-5	0.16	INTRON RhoGAP19D
3R	15881036	3R_15881036_SNP [dm3] 3R_20055314_SNP [dm6]	C	T	1.877e^-5	0.164	INTRON CG17193
2L	7783290	2L_7783290_DEL [dm3] 2L_7783290_DEL [dm6]	ATA	A	1.883e^-5	0.164	SPLICE_SITE_REGION CG7154 DOWNSTREAM CG7164 INTRON CG7154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	15892579	3R_15892579_SNP [dm3] 3R_20066857_SNP [dm6]	A	G	1.904e^-5	0.165	INTERGENIC
2L	12283300	2L_12283300_DEL [dm3] 2L_12283300_DEL [dm6]	CC	C	1.937e^-5	0.166	INTRON aret
X	5414532	X_5414532_DEL [dm3] X_5520499_DEL [dm6]	GCCTAGTTCCC...	G	1.944e^-5	0.166	INTERGENIC
3R	12160898	3R_12160898_DEL [dm3] 3R_16335176_DEL [dm6]	ATACAATTTACTAT...	TG	1.949e^-5	0.166	INTRON Sulf1
3R	15875781	3R_15875781_SNP [dm3] 3R_20050059_SNP [dm6]	A	G	1.957e^-5	0.166	INTRON CG17193
X	9387528	X_9387528_DEL [dm3] X_9493495_DEL [dm6]	CC	C	1.966e^-5	0.166	INTRON mgl
3R	9587906	3R_9587906_SNP [dm3] 3R_13762184_SNP [dm6]	A	G	1.968e^-5	0.166	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
3R	19970510	3R_19970510_SNP [dm3] 3R_24144788_SNP [dm6]	G	T	1.982e^-5	0.166	INTRON Kal1	TF binding site BDTNP1_TFBS_dl
3R	17300071	3R_17300071_SNP [dm3] 3R_21474349_SNP [dm6]	C	T	2.000e^-5	0.166	INTERGENIC
2R	6825205	2R_6825205_SNP [dm3] 2R_10937700_SNP [dm6]	T	C	2.005e^-5	0.166	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8776020	2R_8776020_INS [dm3] 2R_12888515_INS [dm6]	T	TAGT	2.011e^-5	0.166	INTRON vg
3L	3867643	3L_3867643_SNP [dm3] 3L_3867643_SNP [dm6]	G	C	2.020e^-5	0.166	INTERGENIC
2R	7274858	2R_7274858_INS [dm3] 2R_11387353_INS [dm6]	A	AT	2.043e^-5	0.166	INTRON sprt & 1 other
X	17635883	X_17635883_SNP [dm3] X_17741850_SNP [dm6]	C	T	2.046e^-5	0.166	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3658363	X_3658363_INS [dm3] X_3764330_INS [dm6]	A	AA	2.059e^-5	0.166	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	12407886	X_12407886_DEL [dm3] X_12513853_DEL [dm6]	AGA	A	2.067e^-5	0.166	INTRON CG2556	TF binding site mE1_TFBS_HSA
2R	19358438	2R_19358438_INS [dm3] 2R_23470915_INS [dm6]	T	TAGAT	2.073e^-5	0.166	INTRON CG43795 & 1 other
3R	1206780	3R_1206780_DEL [dm3] 3R_5381058_DEL [dm6]	AA	A	2.074e^-5	0.166	INTRON kkv
3R	10628789	3R_10628789_SNP [dm3] 3R_14803067_SNP [dm6]	C	T	2.080e^-5	0.166	SYNONYMOUS_CODING CG14857
3L	12168923	3L_12168923_SNP [dm3] 3L_12175823_SNP [dm6]	C	T	2.088e^-5	0.166	UPSTREAM Rh7 INTERGENIC
3L	6519178	3L_6519178_SNP [dm3] 3L_6526078_SNP [dm6]	A	G	2.130e^-5	0.169	INTRON sfl
3R	18471548	3R_18471548_SNP [dm3] 3R_22645826_SNP [dm6]	A	G	2.142e^-5	0.169	INTRON CG45058
3L	961505	3L_961505_DEL [dm3] 3L_961505_DEL [dm6]	GG	A	2.158e^-5	0.169	INTRON Glut1
2L	3131219	2L_3131219_SNP [dm3] 2L_3131219_SNP [dm6]	T	A	2.235e^-5	0.174	INTRON toc
X	14135621	X_14135621_SNP [dm3] X_14241588_SNP [dm6]	G	T	2.242e^-5	0.174	SYNONYMOUS_CODING mRNA-cap	TF binding site mE1_TFBS_cad
3R	11252079	3R_11252079_DEL [dm3] 3R_15426357_DEL [dm6]	GCTC	G	2.328e^-5	0.18	INTRON CG6118
2L	7253312	2L_7253312_INS [dm3] 2L_7253312_INS [dm6]	T	TTCTATTT	2.336e^-5	0.18	UPSTREAM CG13786 INTERGENIC
3R	15877862	3R_15877862_SNP [dm3] 3R_20052140_SNP [dm6]	C	T	2.375e^-5	0.182	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	1807426	3L_1807426_DEL [dm3] 3L_1807426_DEL [dm6]	AT	A	2.375e^-5	0.182	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC
3R	15877349	3R_15877349_DEL [dm3] 3R_20051627_DEL [dm6]	TCAA	T	2.412e^-5	0.182	INTRON CG17193
3R	15877356	3R_15877356_DEL [dm3] 3R_20051634_DEL [dm6]	AAACGACACATCC...	A	2.412e^-5	0.182	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15877373	3R_15877373_MNP [dm3] 3R_20051651_MNP [dm6]	GCA	TAT	2.412e^-5	0.182	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	13211186	3L_13211186_SNP [dm3] 3L_13218086_SNP [dm6]	C	A	2.416e^-5	0.182	DOWNSTREAM CR45098 & 1 other INTERGENIC
2L	12283030	2L_12283030_SNP [dm3] 2L_12283030_SNP [dm6]	C	T	2.446e^-5	0.182	INTRON aret
2L	16614018	2L_16614018_INS [dm3] 2L_16614018_INS [dm6]	T	TT	2.465e^-5	0.182	INTRON CG42389
X	18370050	X_18370050_INS [dm3] X_18476017_INS [dm6]	T	TA	2.468e^-5	0.182	INTRON CG32547	TF binding site mE1_TFBS_HSA
3R	14368487	3R_14368487_SNP [dm3] 3R_18542765_SNP [dm6]	T	C	2.475e^-5	0.182	INTRON fru
3L	10415609	3L_10415609_SNP [dm3] 3L_10422509_SNP [dm6]	T	A	2.478e^-5	0.182	INTERGENIC
3R	15888896	3R_15888896_SNP [dm3] 3R_20063174_SNP [dm6]	A	C	2.478e^-5	0.182	INTERGENIC
2L	19004441	2L_19004441_SNP [dm3] 2L_19004441_SNP [dm6]	T	A	2.500e^-5	0.183	INTRON CG31793	TF binding site mE1_TFBS_chinmo
2L	18304027	2L_18304027_DEL [dm3] 2L_18304027_DEL [dm6]	TAGTTCAAACGCGGAGAGAA...	T	2.511e^-5	0.183	INTERGENIC
3L	14670103	3L_14670103_SNP [dm3] 3L_14677003_SNP [dm6]	A	T	2.516e^-5	0.183	INTRON ome & 1 other
3R	15877846	3R_15877846_SNP [dm3] 3R_20052124_SNP [dm6]	A	G	2.557e^-5	0.184	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15892451	3R_15892451_SNP [dm3] 3R_20066729_SNP [dm6]	G	T	2.562e^-5	0.184	INTERGENIC
3L	969693	3L_969693_INS [dm3] 3L_969693_INS [dm6]	T	TT	2.569e^-5	0.184	INTRON Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8156491	3R_8156491_SNP [dm3] 3R_12330769_SNP [dm6]	G	T	2.582e^-5	0.184	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15041595	3R_15041595_SNP [dm3] 3R_19215873_SNP [dm6]	T	A	2.598e^-5	0.184	UTR_3_PRIME vib DOWNSTREAM cry
X	15578115	X_15578115_SNP [dm3] X_15684082_SNP [dm6]	G	A	2.599e^-5	0.184	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16553234	2R_16553234_DEL [dm3] 2R_20665729_DEL [dm6]	AT	C	2.620e^-5	0.184	UPSTREAM Fem-1 INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21070327	2L_21070327_INS [dm3] 2L_21070327_INS [dm6]	T	TT	2.631e^-5	0.184	UPSTREAM CG9265 INTRON CG9265
3L	3872627	3L_3872627_SNP [dm3] 3L_3872627_SNP [dm6]	A	G	2.637e^-5	0.184	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
X	10067695	X_10067695_SNP [dm3] X_10173662_SNP [dm6]	C	T	2.641e^-5	0.184	INTRON CG43902 & 1 other
3L	12708133	3L_12708133_SNP [dm3] 3L_12715033_SNP [dm6]	G	A	2.655e^-5	0.184	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15245946	3R_15245946_SNP [dm3] 3R_19420224_SNP [dm6]	C	T	2.658e^-5	0.184	INTRON CG31221
2L	923693	2L_923693_SNP [dm3] 2L_923693_SNP [dm6]	C	T	2.664e^-5	0.184	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21456553	3R_21456553_SNP [dm3] 3R_25630831_SNP [dm6]	A	G	2.714e^-5	0.186	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8076397	3L_8076397_SNP [dm3] 3L_8083297_SNP [dm6]	A	G	2.720e^-5	0.186	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
2R	1733902	2R_1733902_SNP [dm3] 2R_5846397_SNP [dm6]	G	C	2.729e^-5	0.186	INTRON dpr12
3R	23484918	3R_23484918_SNP [dm3] 3R_27659196_SNP [dm6]	A	T	2.730e^-5	0.186	INTRON Mlc1
3R	15888186	3R_15888186_SNP [dm3] 3R_20062464_SNP [dm6]	C	A	2.733e^-5	0.186	INTERGENIC
2R	1251043	2R_1251043_DEL [dm3] 2R_5363538_DEL [dm6]	CCAATATAAGATATTCTCCA...	C	2.746e^-5	0.186	UPSTREAM CG10417 INTRON CR42646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12209977	2L_12209977_SNP [dm3] 2L_12209977_SNP [dm6]	G	C	2.759e^-5	0.186	UTR_3_PRIME CG31759 INTRON aret
3L	16432112	3L_16432112_SNP [dm3] 3L_16439012_SNP [dm6]	A	G	2.759e^-5	0.186	INTRON CG33158 & 1 other
2R	5664884	2R_5664884_DEL [dm3] 2R_9777379_DEL [dm6]	GCCCAGAACTCAG...	G	2.788e^-5	0.186	INTRON CG1688
3R	11955817	3R_11955817_SNP [dm3] 3R_16130095_SNP [dm6]	G	A	2.791e^-5	0.186	INTRON Sb
3L	11603222	3L_11603222_INS [dm3] 3L_11610122_INS [dm6]	C	CC	2.905e^-5	0.193	UPSTREAM CG42832 & 1 other DOWNSTREAM Muc68Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20760997	X_20760997_INS [dm3] X_20889970_INS [dm6]	A	AA	2.911e^-5	0.193	INTRON shakB
3L	10679744	3L_10679744_SNP [dm3] 3L_10686644_SNP [dm6]	G	A	2.922e^-5	0.193	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19447265	3R_19447265_SNP [dm3] 3R_23621543_SNP [dm6]	T	C	2.944e^-5	0.193	INTRON CG31145
3R	11531155	3R_11531155_INS [dm3] 3R_15705433_INS [dm6]	G	GATGCCCAAG	2.947e^-5	0.193	INTRON CG5404
3L	10415866	3L_10415866_SNP [dm3] 3L_10422766_SNP [dm6]	A	G	2.965e^-5	0.194	INTERGENIC
X	4401260	X_4401260_INS [dm3] X_4507227_INS [dm6]	T	TCT	2.995e^-5	0.195	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	20270585	2R_20270585_DEL [dm3] 2R_24383062_DEL [dm6]	AA	A	2.999e^-5	0.195	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo
2R	20403002	2R_20403002_INS [dm3] 2R_24515479_INS [dm6]	A	ATGTATGTA	3.019e^-5	0.195	UPSTREAM Ir60b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18127354	2R_18127354_SNP [dm3] 2R_22239849_SNP [dm6]	G	A	3.023e^-5	0.195	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17635291	X_17635291_INS [dm3] X_17741258_INS [dm6]	C	CC	3.035e^-5	0.195	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	10416006	3L_10416006_SNP [dm3] 3L_10422906_SNP [dm6]	T	G	3.044e^-5	0.195	INTERGENIC
2R	10063282	2R_10063282_SNP [dm3] 2R_14175777_SNP [dm6]	C	T	3.076e^-5	0.196	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3L	5944422	3L_5944422_DEL [dm3] 3L_5951322_DEL [dm6]	GC	G	3.082e^-5	0.196	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5934932	2L_5934932_DEL [dm3] 2L_5934932_DEL [dm6]	AG	T	3.139e^-5	0.198	INTRON dsf	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	19693699	2L_19693699_SNP [dm3] 2L_19693699_SNP [dm6]	G	A	3.143e^-5	0.198	INTRON Lar
2R	19890208	2R_19890208_DEL [dm3] 2R_24002685_DEL [dm6]	TCATCCATT	T	3.148e^-5	0.198	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14644005	3L_14644005_SNP [dm3] 3L_14650905_SNP [dm6]	T	C	3.192e^-5	0.2	INTRON dlp	TF binding site mE1_TFBS_cnc
3L	14386240	3L_14386240_SNP [dm3] 3L_14393140_SNP [dm6]	T	A	3.192e^-5	0.2	INTERGENIC
3R	15699801	3R_15699801_SNP [dm3] 3R_19874079_SNP [dm6]	G	A	3.261e^-5	0.202	INTRON CG4562
3R	16471309	3R_16471309_INS [dm3] 3R_20645587_INS [dm6]	A	AGTTTTGGA	3.261e^-5	0.202	SPLICE_SITE_REGION GluRIIE INTRON GluRIIE
2R	17920667	2R_17920667_SNP [dm3] 2R_22033162_SNP [dm6]	C	A	3.270e^-5	0.202	INTRON CG34370
3R	15893343	3R_15893343_INS [dm3] 3R_20067621_INS [dm6]	A	AG	3.271e^-5	0.202	INTERGENIC
3L	7815860	3L_7815860_SNP [dm3] 3L_7822760_SNP [dm6]	G	C	3.303e^-5	0.203	INTRON Pdp1
3L	6519214	3L_6519214_SNP [dm3] 3L_6526114_SNP [dm6]	T	C	3.322e^-5	0.203	INTRON sfl
3R	15348229	3R_15348229_INS [dm3] 3R_19522507_INS [dm6]	A	AA	3.326e^-5	0.203	INTRON Dys
3L	10253080	3L_10253080_SNP [dm3] 3L_10259980_SNP [dm6]	T	A	3.335e^-5	0.203	INTERGENIC
2R	18044500	2R_18044500_INS [dm3] 2R_22156995_INS [dm6]	G	GG	3.403e^-5	0.206	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	6317095	3L_6317095_SNP [dm3] 3L_6323995_SNP [dm6]	C	A	3.426e^-5	0.206	INTERGENIC
3L	21150093	3L_21150093_SNP [dm3] 3L_21156993_SNP [dm6]	T	A	3.437e^-5	0.206	INTRON Ac78C
3L	16807416	3L_16807416_SNP [dm3] 3L_16814316_SNP [dm6]	T	A	3.444e^-5	0.206	INTRON nudC & 1 other
3R	15890714	3R_15890714_SNP [dm3] 3R_20064992_SNP [dm6]	G	A	3.454e^-5	0.206	INTERGENIC
X	17335274	X_17335274_INS [dm3] X_17441241_INS [dm6]	T	TT	3.460e^-5	0.206	INTRON CG12994
2L	19686298	2L_19686298_SNP [dm3] 2L_19686298_SNP [dm6]	C	A	3.462e^-5	0.206	INTRON Lar
3R	17300061	3R_17300061_SNP [dm3] 3R_21474339_SNP [dm6]	A	G	3.475e^-5	0.206	INTERGENIC
X	15578117	X_15578117_SNP [dm3] X_15684084_SNP [dm6]	G	C	3.496e^-5	0.207	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15875900	3R_15875900_SNP [dm3] 3R_20050178_SNP [dm6]	T	G	3.524e^-5	0.208	INTRON CG17193
2R	17893613	2R_17893613_SNP [dm3] 2R_22006108_SNP [dm6]	C	A	3.545e^-5	0.208	INTRON CG34370
3L	17537340	3L_17537340_SNP [dm3] 3L_17544240_SNP [dm6]	T	A	3.548e^-5	0.208	INTRON Nedd4
3L	1927757	3L_1927757_SNP [dm3] 3L_1927757_SNP [dm6]	C	G	3.564e^-5	0.208	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2L	9320501	2L_9320501_DEL [dm3] 2L_9320501_DEL [dm6]	CCTCTGTTAAGAGTTCAA...	C	3.588e^-5	0.208	INTERGENIC
2L	17201767	2L_17201767_SNP [dm3] 2L_17201767_SNP [dm6]	C	T	3.592e^-5	0.208	INTRON beat-IIIc
2L	3081699	2L_3081699_SNP [dm3] 2L_3081699_SNP [dm6]	C	A	3.593e^-5	0.208	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16626342	2R_16626342_DEL [dm3] 2R_20738837_DEL [dm6]	GC	G	3.602e^-5	0.208	INTRON dpr
X	20576916	X_20576916_SNP [dm3] X_20705889_SNP [dm6]	A	T	3.612e^-5	0.208	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	9835286	3R_9835286_SNP [dm3] 3R_14009564_SNP [dm6]	G	A	3.639e^-5	0.208	INTRON rdx
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	3.658e^-5	0.208	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
3R	17299955	3R_17299955_SNP [dm3] 3R_21474233_SNP [dm6]	C	G	3.668e^-5	0.208	INTERGENIC
2R	17229184	2R_17229184_INS [dm3] 2R_21341679_INS [dm6]	G	GG	3.673e^-5	0.208	UTR_3_PRIME dom UPSTREAM CG15666
3R	15895188	3R_15895188_SNP [dm3] 3R_20069466_SNP [dm6]	T	A	3.686e^-5	0.208	INTERGENIC
2L	21305593	2L_21305593_SNP [dm3] 2L_21305593_SNP [dm6]	A	T	3.688e^-5	0.208	INTRON Mio
3R	15893334	3R_15893334_SNP [dm3] 3R_20067612_SNP [dm6]	A	T	3.697e^-5	0.208	INTERGENIC
X	21112429	X_21112429_INS [dm3] X_21241402_INS [dm6]	G	GCTCCGAGGGGATG...	3.715e^-5	0.209	INTRON CG32521
3L	14386253	3L_14386253_SNP [dm3] 3L_14393153_SNP [dm6]	G	A	3.732e^-5	0.209	INTERGENIC
3R	10628425	3R_10628425_SNP [dm3] 3R_14802703_SNP [dm6]	C	A	3.757e^-5	0.209	INTRON CG14857
3L	18506642	3L_18506642_INS [dm3] 3L_18513542_INS [dm6]	T	TAGAAATGCCT...	3.758e^-5	0.209	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	19688449	2R_19688449_INS [dm3] 2R_23800926_INS [dm6]	A	ACTTAAGCCGA...	3.770e^-5	0.209	UPSTREAM CG30177 INTERGENIC
X	15578022	X_15578022_DEL [dm3] X_15683989_DEL [dm6]	ATGTGTCAC	A	3.774e^-5	0.209	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15180912	3R_15180912_INS [dm3] 3R_19355190_INS [dm6]	T	TGTGAGAAACTGATACTCAC...	3.823e^-5	0.21	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	17746780	2R_17746780_SNP [dm3] 2R_21859275_SNP [dm6]	C	T	3.825e^-5	0.21	INTERGENIC
2L	11144098	2L_11144098_DEL [dm3] 2L_11144098_DEL [dm6]	TGATACAGGAGT...	T	3.848e^-5	0.211	DOWNSTREAM CG31867 INTRON Gyc32E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10259207	X_10259207_SNP [dm3] X_10365174_SNP [dm6]	T	G	3.885e^-5	0.212	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7326262	2R_7326262_INS [dm3] 2R_11438757_INS [dm6]	G	GG	3.901e^-5	0.213	INTRON CG7777
2L	14078389	2L_14078389_DEL [dm3] 2L_14078389_DEL [dm6]	TAAATTCCGCTTGTTATTTT...	T	3.909e^-5	0.213	INTRON nAChRalpha5
3R	15891134	3R_15891134_SNP [dm3] 3R_20065412_SNP [dm6]	A	G	3.936e^-5	0.213	INTERGENIC
X	9050782	X_9050782_SNP [dm3] X_9156749_SNP [dm6]	G	A	3.943e^-5	0.213	UPSTREAM His3.3B DOWNSTREAM Ost48 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	5753897	3R_5753897_SNP [dm3] 3R_9928175_SNP [dm6]	T	C	3.960e^-5	0.213	UPSTREAM Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3095852	2L_3095852_DEL [dm3] 2L_3095852_DEL [dm6]	AACCTAACCG	A	3.969e^-5	0.213	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
X	3922966	X_3922966_INS [dm3] X_4028933_INS [dm6]	C	CACATGTGTTCAAATTTACA...	4.022e^-5	0.216	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15893425	3R_15893425_SNP [dm3] 3R_20067703_SNP [dm6]	C	T	4.058e^-5	0.216	INTERGENIC
3L	16807371	3L_16807371_SNP [dm3] 3L_16814271_SNP [dm6]	G	T	4.066e^-5	0.216	INTRON nudC & 1 other
3R	16085526	3R_16085526_SNP [dm3] 3R_20259804_SNP [dm6]	A	G	4.081e^-5	0.216	INTRON cic	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7205449	2R_7205449_SNP [dm3] 2R_11317944_SNP [dm6]	C	G	4.084e^-5	0.216	UPSTREAM nompA INTRON nompA
3L	609639	3L_609639_INS [dm3] 3L_609639_INS [dm6]	T	TT	4.108e^-5	0.217	UPSTREAM CR44513 INTERGENIC
3L	10679742	3L_10679742_SNP [dm3] 3L_10686642_SNP [dm6]	C	T	4.128e^-5	0.218	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16762016	3R_16762016_SNP [dm3] 3R_20936294_SNP [dm6]	T	C	4.154e^-5	0.218	INTRON CG31191
3R	15812333	3R_15812333_SNP [dm3] 3R_19986611_SNP [dm6]	A	C	4.162e^-5	0.218	INTRON Hs6st
3L	17537325	3L_17537325_DEL [dm3] 3L_17544225_DEL [dm6]	TTAATCATTTTT...	T	4.177e^-5	0.218	INTRON Nedd4
X	8264991	X_8264991_MNP [dm3] X_8370958_MNP [dm6]	GCACTA	TAGTGC	4.183e^-5	0.218	INTERGENIC
3R	15245399	3R_15245399_SNP [dm3] 3R_19419677_SNP [dm6]	G	C	4.202e^-5	0.218	INTRON CG31221
X	5683414	X_5683414_SNP [dm3] X_5789381_SNP [dm6]	C	A	4.240e^-5	0.219	UTR_3_PRIME CG42699 UPSTREAM CG15767
X	15578017	X_15578017_DEL [dm3] X_15683984_DEL [dm6]	TC	T	4.255e^-5	0.219	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2405113	3L_2405113_SNP [dm3] 3L_2405113_SNP [dm6]	A	T	4.259e^-5	0.219	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25095609	3R_25095609_SNP [dm3] 3R_29269887_SNP [dm6]	C	T	4.295e^-5	0.22	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	20172801	2L_20172801_SNP [dm3] 2L_20172801_SNP [dm6]	C	T	4.312e^-5	0.22	INTERGENIC	transposable element FlyBase
X	15578098	X_15578098_SNP [dm3] X_15684065_SNP [dm6]	T	G	4.334e^-5	0.22	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9244388	2R_9244388_SNP [dm3] 2R_13356883_SNP [dm6]	C	T	4.351e^-5	0.22	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13777802	2R_13777802_DEL [dm3] 2R_17890297_DEL [dm6]	TT	T	4.355e^-5	0.22	UPSTREAM PPO1 INTRON Elk
3R	13723660	3R_13723660_SNP [dm3] 3R_17897938_SNP [dm6]	G	T	4.378e^-5	0.22	INTRON Rim
3R	26269557	3R_26269557_DEL [dm3] 3R_30443835_DEL [dm6]	TT	T	4.379e^-5	0.22	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
3L	1829237	3L_1829237_SNP [dm3] 3L_1829237_SNP [dm6]	A	T	4.395e^-5	0.22	UPSTREAM Cpr62Ba INTRON Cpr62Ba
3R	15812336	3R_15812336_SNP [dm3] 3R_19986614_SNP [dm6]	T	C	4.400e^-5	0.22	INTRON Hs6st
2L	3678927	2L_3678927_SNP [dm3] 2L_3678927_SNP [dm6]	G	A	4.408e^-5	0.22	INTRON CG34340
2L	17597830	2L_17597830_DEL [dm3] 2L_17597830_DEL [dm6]	TAT	A	4.414e^-5	0.22	INTRON Sytalpha
X	19945377	X_19945377_INS [dm3] X_20051344_INS [dm6]	A	ACA	4.414e^-5	0.22	UTR_5_PRIME CG9570 INTRON Dop2R	TF binding site mE1_TFBS_chinmo
3L	7044953	3L_7044953_SNP [dm3] 3L_7051853_SNP [dm6]	T	C	4.423e^-5	0.22	INTRON Mp
3L	783426	3L_783426_DEL [dm3] 3L_783426_DEL [dm6]	CATTGAATTGC...	C	4.488e^-5	0.222	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	11087531	3L_11087531_SNP [dm3] 3L_11094431_SNP [dm6]	T	G	4.496e^-5	0.222	UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3R	18737959	3R_18737959_SNP [dm3] 3R_22912237_SNP [dm6]	T	C	4.523e^-5	0.222	INTRON klg
3R	24557801	3R_24557801_SNP [dm3] 3R_28732079_SNP [dm6]	G	A	4.524e^-5	0.222	INTRON htt
3L	12069878	3L_12069878_SNP [dm3] 3L_12076778_SNP [dm6]	C	A	4.525e^-5	0.222	INTRON Sema-5c
3R	4134760	3R_4134760_SNP [dm3] 3R_8309038_SNP [dm6]	A	G	4.528e^-5	0.222	SYNONYMOUS_CODING CG11693 UPSTREAM mir-4918 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	12112682	3L_12112682_INS [dm3] 3L_12119582_INS [dm6]	A	AATTTAAA	4.586e^-5	0.224	UTR_3_PRIME ssp UPSTREAM CG11560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe
3R	15874689	3R_15874689_SNP [dm3] 3R_20048967_SNP [dm6]	G	C	4.599e^-5	0.224	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
3L	3701391	3L_3701391_DEL [dm3] 3L_3701391_DEL [dm6]	TTTATT	T	4.602e^-5	0.224	INTERGENIC
X	6692565	X_6692565_DEL [dm3] X_6798532_DEL [dm6]	TAT	T	4.637e^-5	0.225	INTRON C3G
3L	19625804	3L_19625804_INS [dm3] 3L_19632704_INS [dm6]	A	AA	4.656e^-5	0.225	UTR_5_PRIME wnd INTRON wnd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15867313	3L_15867313_INS [dm3] 3L_15874213_INS [dm6]	C	CC	4.659e^-5	0.225	INTRON pHCl
2L	21263824	2L_21263824_DEL [dm3] 2L_21263824_DEL [dm6]	CCAAA	C	4.699e^-5	0.225	UPSTREAM mir-4974 INTRON CG8671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15884874	3R_15884874_SNP [dm3] 3R_20059152_SNP [dm6]	G	C	4.708e^-5	0.225	UTR_3_PRIME mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1
2L	12282953	2L_12282953_DEL [dm3] 2L_12282953_DEL [dm6]	TATAA	T	4.724e^-5	0.225	INTRON aret
2L	4693842	2L_4693842_INS [dm3] 2L_4693842_INS [dm6]	C	CTTCCGCAGTTTC...	4.730e^-5	0.225	UPSTREAM CG34351 INTERGENIC
3R	15241936	3R_15241936_SNP [dm3] 3R_19416214_SNP [dm6]	C	T	4.739e^-5	0.225	SYNONYMOUS_CODING CG31221
3R	14915383	3R_14915383_INS [dm3] 3R_19089661_INS [dm6]	A	AA	4.760e^-5	0.225	INTRON cdi
X	14321291	X_14321291_SNP [dm3] X_14427258_SNP [dm6]	C	A	4.761e^-5	0.225	INTRON dpr8
2L	1613034	2L_1613034_SNP [dm3] 2L_1613034_SNP [dm6]	C	G	4.770e^-5	0.225	DOWNSTREAM CG14352 INTRON RFeSP	TF binding site mE1_TFBS_chinmo
2R	6175206	2R_6175206_INS [dm3] 2R_10287701_INS [dm6]	A	AA	4.815e^-5	0.225	UPSTREAM CAP INTRON CAP
X	13500120	X_13500120_DEL [dm3] X_13606087_DEL [dm6]	TCGATAATGCCGT...	T	4.819e^-5	0.225	UTR_5_PRIME CG11178 UPSTREAM CG11178 DOWNSTREAM CR44654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	15877888	3R_15877888_SNP [dm3] 3R_20052166_SNP [dm6]	C	G	4.828e^-5	0.225	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	10484674	3R_10484674_SNP [dm3] 3R_14658952_SNP [dm6]	C	T	4.829e^-5	0.225	SYNONYMOUS_CODING CG3505 UPSTREAM Hexim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20513977	2R_20513977_SNP [dm3] 2R_24626454_SNP [dm6]	G	T	4.846e^-5	0.225	INTRON CG13594
2R	4879898	2R_4879898_DEL [dm3] 2R_8992393_DEL [dm6]	AATTCGTGTAA...	A	4.854e^-5	0.225	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16286698	3R_16286698_SNP [dm3] 3R_20460976_SNP [dm6]	G	T	4.868e^-5	0.225	INTRON Gfrl
2R	20868496	2R_20868496_DEL [dm3] 2R_24980973_DEL [dm6]	ATAATATAATAATA...	A	4.874e^-5	0.225	INTRON emp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6784933	2R_6784933_INS [dm3] 2R_10897428_INS [dm6]	T	TT	4.878e^-5	0.225	DOWNSTREAM Rpb5 & 1 other INTRON CG7712	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
2R	9734449	2R_9734449_DEL [dm3] 2R_13846944_DEL [dm6]	TGTCGAT	T	4.905e^-5	0.226	UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl
3L	12525909	3L_12525909_SNP [dm3] 3L_12532809_SNP [dm6]	G	T	4.905e^-5	0.226	INTRON Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	21197896	2L_21197896_SNP [dm3] 2L_21197896_SNP [dm6]	T	C	4.926e^-5	0.226	INTRON Ret
3L	18213435	3L_18213435_SNP [dm3] 3L_18220335_SNP [dm6]	A	T	4.939e^-5	0.226	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3R	15675944	3R_15675944_SNP [dm3] 3R_19850222_SNP [dm6]	A	G	4.970e^-5	0.227	SYNONYMOUS_CODING CG4662
3L	10679759	3L_10679759_SNP [dm3] 3L_10686659_SNP [dm6]	G	T	4.993e^-5	0.227	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8086475	2R_8086475_INS [dm3] 2R_12198970_INS [dm6]	A	ATTC	5.015e^-5	0.227	UPSTREAM CG8858 DOWNSTREAM RpS11 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20367528	2R_20367528_DEL [dm3] 2R_24480005_DEL [dm6]	TCTCTCATCT	T	5.015e^-5	0.227	INTRON CG13579
X	8448274	X_8448274_INS [dm3] X_8554241_INS [dm6]	A	ATAA	5.036e^-5	0.228	UTR_3_PRIME Nrg DOWNSTREAM Nrg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2R	1006423	2R_1006423_INS [dm3] 2R_5118918_INS [dm6]	T	TGT	5.059e^-5	0.228	INTRON gus
3L	11087462	3L_11087462_SNP [dm3] 3L_11094362_SNP [dm6]	G	A	5.154e^-5	0.232	SPLICE_SITE_REGION CG6279 UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
X	14920698	X_14920698_INS [dm3] X_15026665_INS [dm6]	A	ACAATA	5.183e^-5	0.232	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_twi
2R	10063117	2R_10063117_SNP [dm3] 2R_14175612_SNP [dm6]	G	A	5.193e^-5	0.232	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13020051	2R_13020051_SNP [dm3] 2R_17132546_SNP [dm6]	C	T	5.214e^-5	0.233	UPSTREAM CR45273 & 1 other INTERGENIC
2R	18127876	2R_18127876_SNP [dm3] 2R_22240371_SNP [dm6]	G	A	5.228e^-5	0.233	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2866152	3L_2866152_DEL [dm3] 3L_2866152_DEL [dm6]	CC	A	5.252e^-5	0.233	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	19145048	2R_19145048_SNP [dm3] 2R_23257525_SNP [dm6]	C	A	5.261e^-5	0.233	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12210043	2L_12210043_DEL [dm3] 2L_12210043_DEL [dm6]	AATTCG	A	5.323e^-5	0.235	UTR_3_PRIME CG31759 DOWNSTREAM CG31759 INTRON aret
3R	17299940	3R_17299940_INS [dm3] 3R_21474218_INS [dm6]	T	TACTACTAG	5.358e^-5	0.236	INTERGENIC
3L	13839796	3L_13839796_SNP [dm3] 3L_13846696_SNP [dm6]	T	G	5.416e^-5	0.238	INTRON Hml
2L	7117805	2L_7117805_SNP [dm3] 2L_7117805_SNP [dm6]	A	G	5.449e^-5	0.238	INTRON Pvf3
3L	1024499	3L_1024499_SNP [dm3] 3L_1024499_SNP [dm6]	G	A	5.460e^-5	0.238	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17744251	3L_17744251_SNP [dm3] 3L_17751151_SNP [dm6]	C	T	5.469e^-5	0.238	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
X	3658906	X_3658906_DEL [dm3] X_3764873_DEL [dm6]	AAATTT	A	5.510e^-5	0.238	INTRON tlk
3R	385292	3R_385292_INS [dm3] 3R_4559570_INS [dm6]	C	CGTATGTATATAC...	5.516e^-5	0.238	INTERGENIC
3L	9632105	3L_9632105_DEL [dm3] 3L_9639005_DEL [dm6]	ATATA	A	5.526e^-5	0.238	UTR_3_PRIME CG8329 UPSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10415868	3L_10415868_SNP [dm3] 3L_10422768_SNP [dm6]	A	G	5.533e^-5	0.238	INTERGENIC
2L	919062	2L_919062_INS [dm3] 2L_919062_INS [dm6]	C	CTC	5.534e^-5	0.238	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10223310	2R_10223310_DEL [dm3] 2R_14335805_DEL [dm6]	TTGGGTAGCTT...	T	5.571e^-5	0.238	INTRON Shroom
3R	15885852	3R_15885852_SNP [dm3] 3R_20060130_SNP [dm6]	T	C	5.572e^-5	0.238	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
3L	17023818	3L_17023818_SNP [dm3] 3L_17030718_SNP [dm6]	G	T	5.580e^-5	0.238	SYNONYMOUS_CODING Ilp8 DOWNSTREAM CG7730
X	21813713	X_21813713_SNP [dm3] X_22411878_SNP [dm6]	G	C	5.597e^-5	0.238	INTERGENIC	transposable element FlyBase
2R	7798323	2R_7798323_SNP [dm3] 2R_11910818_SNP [dm6]	T	G	5.598e^-5	0.238	INTRON CG13183
X	11170561	X_11170561_DEL [dm3] X_11276528_DEL [dm6]	ATAGTGTAAGAGTTATTTTC...	A	5.612e^-5	0.238	INTRON CG44422	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	16471301	3R_16471301_DEL [dm3] 3R_20645579_DEL [dm6]	ATATA	A	5.624e^-5	0.238	INTRON GluRIIE
2R	2847935	2R_2847935_DEL [dm3] 2R_6960430_DEL [dm6]	CGCA	C	5.642e^-5	0.238	INTRON mim & 1 other
3L	18291644	3L_18291644_INS [dm3] 3L_18298544_INS [dm6]	TT	CGAGGGCTAATGGCTCGAAG...	5.643e^-5	0.238	DOWNSTREAM CG13700 INTERGENIC
3R	15875755	3R_15875755_SNP [dm3] 3R_20050033_SNP [dm6]	G	A	5.647e^-5	0.238	INTRON CG17193
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	5.680e^-5	0.238	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10548806	3R_10548806_SNP [dm3] 3R_14723084_SNP [dm6]	G	T	5.684e^-5	0.238	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	17537350	3L_17537350_DEL [dm3] 3L_17544250_DEL [dm6]	TT	T	5.703e^-5	0.238	SPLICE_SITE_REGION Nedd4 INTRON Nedd4
3R	4571522	3R_4571522_DEL [dm3] 3R_8745800_DEL [dm6]	TATTTAAAATAATTGCATTT...	AAA	5.710e^-5	0.238	UPSTREAM CG9801 INTRON CG9801
3R	16232381	3R_16232381_DEL [dm3] 3R_20406659_DEL [dm6]	TC	T	5.720e^-5	0.238	UTR_3_PRIME CG4335 INTRON Gfrl	TF binding site mE1_TFBS_inv
3R	16840364	3R_16840364_INS [dm3] 3R_21014642_INS [dm6]	A	AA	5.747e^-5	0.238	UTR_3_PRIME Calx DOWNSTREAM Calx
2L	17194108	2L_17194108_SNP [dm3] 2L_17194108_SNP [dm6]	G	A	5.764e^-5	0.238	INTRON beat-IIIc
2L	17194625	2L_17194625_SNP [dm3] 2L_17194625_SNP [dm6]	C	T	5.814e^-5	0.238	INTRON beat-IIIc
3R	10469642	3R_10469642_SNP [dm3] 3R_14643920_SNP [dm6]	T	C	5.824e^-5	0.238	UTR_3_PRIME l_3_L1231 DOWNSTREAM l_3_L1231
2R	17809045	2R_17809045_SNP [dm3] 2R_21921540_SNP [dm6]	G	A	5.826e^-5	0.238	UTR_5_PRIME Fili	TF binding site mE1_TFBS_inv
2R	7139613	2R_7139613_SNP [dm3] 2R_11252108_SNP [dm6]	G	A	5.829e^-5	0.238	UTR_3_PRIME Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11397677	2R_11397677_INS [dm3] 2R_15510172_INS [dm6]	T	TAT	5.861e^-5	0.238	INTERGENIC
2L	4679586	2L_4679586_SNP [dm3] 2L_4679586_SNP [dm6]	G	C	5.893e^-5	0.238	INTERGENIC
3R	15768692	3R_15768692_SNP [dm3] 3R_19942970_SNP [dm6]	A	G	5.900e^-5	0.238	INTRON Hs6st
3R	15895164	3R_15895164_SNP [dm3] 3R_20069442_SNP [dm6]	C	A	5.920e^-5	0.238	INTERGENIC
X	13676308	X_13676308_SNP [dm3] X_13782275_SNP [dm6]	C	A	5.946e^-5	0.238	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15874695	3R_15874695_SNP [dm3] 3R_20048973_SNP [dm6]	G	A	5.948e^-5	0.238	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
3R	11955920	3R_11955920_SNP [dm3] 3R_16130198_SNP [dm6]	A	C	5.950e^-5	0.238	INTRON Sb
3L	15783749	3L_15783749_DEL [dm3] 3L_15790649_DEL [dm6]	AAC	A	5.962e^-5	0.238	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13221353	X_13221353_DEL [dm3] X_13327320_DEL [dm6]	TT	T	5.964e^-5	0.238	INTRON IP3K2
3R	19466296	3R_19466296_SNP [dm3] 3R_23640574_SNP [dm6]	C	T	5.968e^-5	0.238	INTRON CG31145
3L	14219511	3L_14219511_INS [dm3] 3L_14226411_INS [dm6]	G	GAG	5.987e^-5	0.238	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	923648	2L_923648_SNP [dm3] 2L_923648_SNP [dm6]	A	T	6.003e^-5	0.238	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21157605	3R_21157605_SNP [dm3] 3R_25331883_SNP [dm6]	A	G	6.024e^-5	0.238	SYNONYMOUS_CODING CG10669 UPSTREAM CHKov2	TF binding site mE1_TFBS_cad
2R	10063870	2R_10063870_SNP [dm3] 2R_14176365_SNP [dm6]	T	G	6.033e^-5	0.238	INTRON cg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	15211892	2L_15211892_SNP [dm3] 2L_15211892_SNP [dm6]	T	A	6.038e^-5	0.238	INTERGENIC
X	13676295	X_13676295_SNP [dm3] X_13782262_SNP [dm6]	A	T	6.047e^-5	0.238	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25323609	3R_25323609_SNP [dm3] 3R_29497887_SNP [dm6]	A	C	6.051e^-5	0.238	NON_SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14078383	2L_14078383_SNP [dm3] 2L_14078383_SNP [dm6]	G	A	6.053e^-5	0.238	INTRON nAChRalpha5
3R	15108762	3R_15108762_SNP [dm3] 3R_19283040_SNP [dm6]	G	T	6.070e^-5	0.238	INTERGENIC
3L	11110060	3L_11110060_SNP [dm3] 3L_11116960_SNP [dm6]	G	T	6.077e^-5	0.238	NON_SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_dl
2L	8861897	2L_8861897_INS [dm3] 2L_8861897_INS [dm6]	T	TG	6.077e^-5	0.238	UPSTREAM CG32986 DOWNSTREAM CR45260 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12379812	X_12379812_SNP [dm3] X_12485779_SNP [dm6]	C	G	6.080e^-5	0.238	INTERGENIC
3R	15891264	3R_15891264_SNP [dm3] 3R_20065542_SNP [dm6]	G	A	6.082e^-5	0.238	INTERGENIC
2L	2802021	2L_2802021_SNP [dm3] 2L_2802021_SNP [dm6]	C	A	6.096e^-5	0.238	INTERGENIC
3L	4417400	3L_4417400_SNP [dm3] 3L_4417400_SNP [dm6]	A	T	6.117e^-5	0.238	INTRON DOR
X	19198568	X_19198568_INS [dm3] X_19304535_INS [dm6]	T	TT	6.117e^-5	0.238	INTRON CG8051
3L	95159	3L_95159_MNP [dm3] 3L_95159_MNP [dm6]	GCC	AAT	6.126e^-5	0.238	INTERGENIC
X	6878141	X_6878141_DEL [dm3] X_6984108_DEL [dm6]	AGCTTTAACGTTAT...	A	6.142e^-5	0.238	UTR_5_PRIME ogre INTRON ogre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22020172	2L_22020172_INS [dm3] 2L_22020172_INS [dm6]	T	TT	6.144e^-5	0.238	INTRON tio EXON CR33987	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	14670092	3L_14670092_SNP [dm3] 3L_14676992_SNP [dm6]	A	G	6.285e^-5	0.243	INTRON ome & 1 other
3L	8252111	3L_8252111_INS [dm3] 3L_8259011_INS [dm6]	T	TT	6.305e^-5	0.243	INTRON Dscam4
3R	26137458	3R_26137458_INS [dm3] 3R_30311736_INS [dm6]	T	TG	6.314e^-5	0.243	INTRON hdc
X	4927314	X_4927314_INS [dm3] X_5033281_INS [dm6]	T	TT	6.352e^-5	0.244	INTRON CR44833
3L	10517231	3L_10517231_SNP [dm3] 3L_10524131_SNP [dm6]	G	A	6.406e^-5	0.244	INTRON A2bp1
3L	4542317	3L_4542317_SNP [dm3] 3L_4542317_SNP [dm6]	A	G	6.420e^-5	0.244	UTR_5_PRIME CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10817533	2L_10817533_SNP [dm3] 2L_10817533_SNP [dm6]	A	G	6.431e^-5	0.244	INTRON Nos
X	17628810	X_17628810_SNP [dm3] X_17734777_SNP [dm6]	C	A	6.440e^-5	0.244	UTR_5_PRIME CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17635424	X_17635424_DEL [dm3] X_17741391_DEL [dm6]	TGGGTATCGAAAGCGAATCC...	T	6.441e^-5	0.244	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	12980692	2R_12980692_SNP [dm3] 2R_17093187_SNP [dm6]	T	C	6.453e^-5	0.244	DOWNSTREAM GstS1 & 1 other INTERGENIC
3R	15878285	3R_15878285_SNP [dm3] 3R_20052563_SNP [dm6]	G	A	6.457e^-5	0.244	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	5857071	3L_5857071_SNP [dm3] 3L_5863971_SNP [dm6]	T	A	6.487e^-5	0.244	INTERGENIC
3R	15564387	3R_15564387_SNP [dm3] 3R_19738665_SNP [dm6]	T	C	6.529e^-5	0.244	INTRON GluClalpha
3L	14743150	3L_14743150_DEL [dm3] 3L_14750050_DEL [dm6]	AA	A	6.541e^-5	0.244	DOWNSTREAM Trl INTRON Trl & 1 other
2R	7201332	2R_7201332_SNP [dm3] 2R_11313827_SNP [dm6]	G	A	6.542e^-5	0.244	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15888127	3R_15888127_SNP [dm3] 3R_20062405_SNP [dm6]	G	A	6.545e^-5	0.244	INTERGENIC
3L	5185834	3L_5185834_DEL [dm3] 3L_5192734_DEL [dm6]	AA	A	6.585e^-5	0.244	INTRON shep
3R	19750711	3R_19750711_INS [dm3] 3R_23924989_INS [dm6]	C	CC	6.585e^-5	0.244	DOWNSTREAM CG31141 INTRON Ndc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16122300	2R_16122300_SNP [dm3] 2R_20234795_SNP [dm6]	G	A	6.591e^-5	0.244	NON_SYNONYMOUS_CODING CG11044 UPSTREAM CG44624 & 1 other
2L	4679653	2L_4679653_SNP [dm3] 2L_4679653_SNP [dm6]	G	A	6.613e^-5	0.244	INTERGENIC
2R	18130682	2R_18130682_SNP [dm3] 2R_22243177_SNP [dm6]	G	C	6.628e^-5	0.244	UPSTREAM dve INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14078435	2L_14078435_SNP [dm3] 2L_14078435_SNP [dm6]	C	A	6.629e^-5	0.244	INTRON nAChRalpha5
3L	855536	3L_855536_DEL [dm3] 3L_855536_DEL [dm6]	AGTCATCGCA	A	6.630e^-5	0.244	INTRON dpr20
3L	14296654	3L_14296654_SNP [dm3] 3L_14303554_SNP [dm6]	T	A	6.646e^-5	0.244	INTRON fz
X	21262377	X_21262377_DEL [dm3] X_21391350_DEL [dm6]	AAACAA	A	6.649e^-5	0.244	UTR_3_PRIME mst DOWNSTREAM mst
X	3665290	X_3665290_INS [dm3] X_3771257_INS [dm6]	A	ATTCA	6.657e^-5	0.244	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3R	10628371	3R_10628371_SNP [dm3] 3R_14802649_SNP [dm6]	A	T	6.677e^-5	0.244	INTRON CG14857
X	19653387	X_19653387_INS [dm3] X_19759354_INS [dm6]	T	TC	6.681e^-5	0.244	UTR_3_PRIME CG12702 DOWNSTREAM Pmp70
3R	15159912	3R_15159912_SNP [dm3] 3R_19334190_SNP [dm6]	C	A	6.682e^-5	0.244	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19465071	3R_19465071_SNP [dm3] 3R_23639349_SNP [dm6]	T	A	6.726e^-5	0.245	INTRON CG31145	TF binding site mE1_TFBS_inv
X	22326492	X_22326492_DEL [dm3] X_22924656_DEL [dm6]	AA	A	6.759e^-5	0.246	INTERGENIC
3L	14908900	3L_14908900_DEL [dm3] 3L_14915800_DEL [dm6]	AA	A	6.766e^-5	0.246	INTRON DCX-EMAP
3L	10253079	3L_10253079_SNP [dm3] 3L_10259979_SNP [dm6]	G	A	6.787e^-5	0.246	INTERGENIC
X	16306790	X_16306790_INS [dm3] X_16412757_INS [dm6]	A	ATCCACATA	6.801e^-5	0.246	INTRON CG4301	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2405119	3L_2405119_SNP [dm3] 3L_2405119_SNP [dm6]	G	A	6.815e^-5	0.246	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18434597	X_18434597_DEL [dm3] X_18540564_DEL [dm6]	TT	T	6.868e^-5	0.247	INTRON Bx
3R	15892624	3R_15892624_DEL [dm3] 3R_20066902_DEL [dm6]	TG	T	6.874e^-5	0.247	INTERGENIC
X	14610349	X_14610349_INS [dm3] X_14716316_INS [dm6]	T	TG	6.927e^-5	0.249	INTRON NetB
2L	20125599	2L_20125599_DEL [dm3] 2L_20125599_DEL [dm6]	TC	T	6.944e^-5	0.249	INTERGENIC
2L	7933128	2L_7933128_SNP [dm3] 2L_7933128_SNP [dm6]	C	T	6.972e^-5	0.25	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	11510556	3L_11510556_DEL [dm3] 3L_11517456_DEL [dm6]	TGTTTT	T	7.009e^-5	0.25	INTRON CG7512	TF binding site BDTNP1_TFBS_sna
2L	568162	2L_568162_INS [dm3] 2L_568162_INS [dm6]	T	TTTACTTAAGAA...	7.010e^-5	0.25	UPSTREAM CG2807 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	768190	3L_768190_DEL [dm3] 3L_768190_DEL [dm6]	GC	G	7.034e^-5	0.25	INTERGENIC
X	21838572	X_21838572_SNP [dm3] X_22436737_SNP [dm6]	C	T	7.073e^-5	0.251	INTERGENIC
4	1174442	4_1174442_DEL [dm3] 4_1153816_DEL [dm6]	AGAGTGAAAGCA...	A	7.075e^-5	0.251	INTRON CG32017 & 1 other	transposable element FlyBase
2L	3283305	2L_3283305_SNP [dm3] 2L_3283305_SNP [dm6]	T	C	7.121e^-5	0.252	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15272127	3L_15272127_SNP [dm3] 3L_15279027_SNP [dm6]	T	G	7.159e^-5	0.252	INTERGENIC
2R	10051285	2R_10051285_SNP [dm3] 2R_14163780_SNP [dm6]	C	G	7.163e^-5	0.252	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19821429	2R_19821429_DEL [dm3] 2R_23933906_DEL [dm6]	AA	A	7.191e^-5	0.252	SPLICE_SITE_DONOR Ca-P60A UPSTREAM Ca-P60A INTRON Ca-P60A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
X	15578013	X_15578013_SNP [dm3] X_15683980_SNP [dm6]	C	T	7.192e^-5	0.252	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16580600	2R_16580600_DEL [dm3] 2R_20693095_DEL [dm6]	ATTCTGC	A	7.258e^-5	0.252	DOWNSTREAM CR44659
3L	4049219	3L_4049219_SNP [dm3] 3L_4049219_SNP [dm6]	T	A	7.283e^-5	0.252	INTRON CG1136
X	2459064	X_2459064_INS [dm3] X_2565031_INS [dm6]	A	ACATA	7.285e^-5	0.252	INTRON Pdfr
X	3665462	X_3665462_SNP [dm3] X_3771429_SNP [dm6]	T	C	7.291e^-5	0.252	INTRON tlk
2L	16545166	2L_16545166_DEL [dm3] 2L_16545166_DEL [dm6]	CCGTTTAT	C	7.301e^-5	0.252	UTR_5_PRIME CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20659582	X_20659582_INS [dm3] X_20788555_INS [dm6]	T	TCCCT	7.313e^-5	0.252	UPSTREAM shakB INTRON shakB
X	15742143	X_15742143_DEL [dm3] X_15848110_DEL [dm6]	AT	C	7.316e^-5	0.252	DOWNSTREAM CG8578 INTRON sun
X	16913902	X_16913902_DEL [dm3] X_17019869_DEL [dm6]	AA	C	7.319e^-5	0.252	INTRON CG45002
3L	13839804	3L_13839804_DEL [dm3] 3L_13846704_DEL [dm6]	AAGT	CC	7.354e^-5	0.252	INTRON Hml
2R	18125602	2R_18125602_SNP [dm3] 2R_22238097_SNP [dm6]	G	A	7.362e^-5	0.252	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15875906	3R_15875906_SNP [dm3] 3R_20050184_SNP [dm6]	G	A	7.369e^-5	0.252	INTRON CG17193
3R	17345560	3R_17345560_DEL [dm3] 3R_21519838_DEL [dm6]	TAGA	T	7.378e^-5	0.252	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	15884245	3R_15884245_SNP [dm3] 3R_20058523_SNP [dm6]	G	A	7.411e^-5	0.252	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	19482798	3L_19482798_DEL [dm3] 3L_19489698_DEL [dm6]	AGGTTA	A	7.416e^-5	0.252	INTERGENIC
3R	15812356	3R_15812356_SNP [dm3] 3R_19986634_SNP [dm6]	T	G	7.422e^-5	0.252	INTRON Hs6st
X	7147585	X_7147585_SNP [dm3] X_7253552_SNP [dm6]	T	C	7.427e^-5	0.252	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3R	13144288	3R_13144288_SNP [dm3] 3R_17318566_SNP [dm6]	C	T	7.430e^-5	0.252	INTERGENIC
3R	15246068	3R_15246068_DEL [dm3] 3R_19420346_DEL [dm6]	AAAA	A	7.443e^-5	0.252	INTRON CG31221
X	20764616	X_20764616_INS [dm3] X_20893589_INS [dm6]	A	AAA	7.455e^-5	0.252	INTRON shakB
3R	15489993	3R_15489993_SNP [dm3] 3R_19664271_SNP [dm6]	C	A	7.456e^-5	0.252	UPSTREAM CG7432 DOWNSTREAM ort INTERGENIC
2R	10063372	2R_10063372_SNP [dm3] 2R_14175867_SNP [dm6]	G	T	7.476e^-5	0.253	INTRON cg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	7.500e^-5	0.253	INTRON Doa
3L	14386254	3L_14386254_SNP [dm3] 3L_14393154_SNP [dm6]	A	T	7.567e^-5	0.254	INTERGENIC
3L	11237703	3L_11237703_SNP [dm3] 3L_11244603_SNP [dm6]	A	G	7.576e^-5	0.254	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2R	13881626	2R_13881626_SNP [dm3] 2R_17994121_SNP [dm6]	A	T	7.587e^-5	0.254	INTRON dpr13
2L	309609	2L_309609_SNP [dm3] 2L_309609_SNP [dm6]	A	G	7.588e^-5	0.254	UPSTREAM Plc21C & 1 other INTRON Plc21C	TF binding site BDTNP1_TFBS_dl
3L	13186655	3L_13186655_SNP [dm3] 3L_13193555_SNP [dm6]	A	C	7.632e^-5	0.255	INTERGENIC
3L	15402378	3L_15402378_SNP [dm3] 3L_15409278_SNP [dm6]	T	A	7.638e^-5	0.255	INTERGENIC
2L	8111870	2L_8111870_SNP [dm3] 2L_8111870_SNP [dm6]	T	C	7.646e^-5	0.255	UTR_3_PRIME Bsg
2R	14147151	2R_14147151_SNP [dm3] 2R_18259646_SNP [dm6]	C	A	7.688e^-5	0.256	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	604949	3L_604949_INS [dm3] 3L_604949_INS [dm6]	T	TTGGT	7.714e^-5	0.256	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	2089794	3L_2089794_SNP [dm3] 3L_2089794_SNP [dm6]	C	A	7.745e^-5	0.256	UTR_3_PRIME sls DOWNSTREAM sls & 1 other INTRON sls	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2R	10552688	2R_10552688_SNP [dm3] 2R_14665183_SNP [dm6]	G	A	7.753e^-5	0.256	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
X	9702205	X_9702205_DEL [dm3] X_9808172_DEL [dm6]	AT	A	7.795e^-5	0.257	INTRON CG32698
2L	4687976	2L_4687976_SNP [dm3] 2L_4687976_SNP [dm6]	G	A	7.798e^-5	0.257	NON_SYNONYMOUS_CODING Elba3 DOWNSTREAM CG11929 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4680554	2L_4680554_SNP [dm3] 2L_4680554_SNP [dm6]	G	C	7.809e^-5	0.257	INTERGENIC
2L	4599708	2L_4599708_DEL [dm3] 2L_4599708_DEL [dm6]	ACGAAGGCAGGCTACCTAT...	C	7.810e^-5	0.257	INTRON dp
X	789165	X_789165_DEL [dm3] X_895132_DEL [dm6]	TA	T	7.842e^-5	0.257	UTR_3_PRIME CG11663 INTRON CG43867
2R	9648287	2R_9648287_SNP [dm3] 2R_13760782_SNP [dm6]	A	G	7.852e^-5	0.257	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14698544	3R_14698544_DEL [dm3] 3R_18872822_DEL [dm6]	CC	C	7.856e^-5	0.257	INTERGENIC
3L	423812	3L_423812_SNP [dm3] 3L_423812_SNP [dm6]	G	A	7.898e^-5	0.258	INTERGENIC
2R	1149738	2R_1149738_DEL [dm3] 2R_5262233_DEL [dm6]	CT	C	7.939e^-5	0.258	INTRON d4	transposable element FlyBase
2R	2987649	2R_2987649_DEL [dm3] 2R_7100144_DEL [dm6]	CAACTAC	C	7.972e^-5	0.258	INTRON esn
2L	12301410	2L_12301410_SNP [dm3] 2L_12301410_SNP [dm6]	A	T	8.011e^-5	0.258	INTRON aret
3L	15402382	3L_15402382_SNP [dm3] 3L_15409282_SNP [dm6]	G	A	8.012e^-5	0.258	INTERGENIC
3R	14541307	3R_14541307_SNP [dm3] 3R_18715585_SNP [dm6]	C	T	8.026e^-5	0.258	UTR_3_PRIME VAChT INTRON Cha
3L	17090288	3L_17090288_SNP [dm3] 3L_17097188_SNP [dm6]	G	A	8.027e^-5	0.258	INTRON Rbp6
3R	23410659	3R_23410659_SNP [dm3] 3R_27584937_SNP [dm6]	A	T	8.040e^-5	0.258	NON_SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
2R	10063618	2R_10063618_SNP [dm3] 2R_14176113_SNP [dm6]	G	T	8.049e^-5	0.258	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25519796	3R_25519796_SNP [dm3] 3R_29694074_SNP [dm6]	C	T	8.049e^-5	0.258	INTRON dmrt99B
X	9300857	X_9300857_SNP [dm3] X_9406824_SNP [dm6]	T	C	8.056e^-5	0.258	INTRON mgl	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	14868690	3L_14868690_SNP [dm3] 3L_14875590_SNP [dm6]	T	G	8.130e^-5	0.26	INTRON CG17839
3L	13962310	3L_13962310_SNP [dm3] 3L_13969210_SNP [dm6]	T	G	8.150e^-5	0.26	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3R	10140699	3R_10140699_SNP [dm3] 3R_14314977_SNP [dm6]	C	T	8.175e^-5	0.26	SYNONYMOUS_CODING Crz DOWNSTREAM CG31321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7044969	3L_7044969_SNP [dm3] 3L_7051869_SNP [dm6]	G	C	8.210e^-5	0.26	INTRON Mp
3L	21606710	3L_21606710_DEL [dm3] 3L_21613610_DEL [dm6]	TCTC	T	8.211e^-5	0.26	DOWNSTREAM S1P & 1 other INTERGENIC
X	5422938	X_5422938_SNP [dm3] X_5528905_SNP [dm6]	T	G	8.234e^-5	0.26	DOWNSTREAM Vsx2 INTERGENIC
2L	6322899	2L_6322899_SNP [dm3] 2L_6322899_SNP [dm6]	A	G	8.236e^-5	0.26	UTR_3_PRIME Ddr UPSTREAM PDZ-GEF
3L	18320681	3L_18320681_SNP [dm3] 3L_18327581_SNP [dm6]	T	G	8.249e^-5	0.26	INTERGENIC
2L	19549387	2L_19549387_INS [dm3] 2L_19549387_INS [dm6]	T	TGAAT	8.267e^-5	0.26	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
2L	10510871	2L_10510871_SNP [dm3] 2L_10510871_SNP [dm6]	G	A	8.273e^-5	0.26	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other
3R	15881347	3R_15881347_SNP [dm3] 3R_20055625_SNP [dm6]	G	C	8.286e^-5	0.26	DOWNSTREAM CG4390 INTRON CG17193
3L	10567299	3L_10567299_SNP [dm3] 3L_10574199_SNP [dm6]	C	A	8.300e^-5	0.26	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
2R	10063511	2R_10063511_SNP [dm3] 2R_14176006_SNP [dm6]	A	G	8.301e^-5	0.26	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4235264	3L_4235264_INS [dm3] 3L_4235264_INS [dm6]	T	TA	8.319e^-5	0.26	INTRON ImpL2
3L	10412325	3L_10412325_SNP [dm3] 3L_10419225_SNP [dm6]	A	C	8.385e^-5	0.262	INTERGENIC
3L	4417389	3L_4417389_SNP [dm3] 3L_4417389_SNP [dm6]	G	A	8.392e^-5	0.262	INTRON DOR
2L	14968272	2L_14968272_DEL [dm3] 2L_14968272_DEL [dm6]	TCTT	T	8.447e^-5	0.263	INTRON CG42313
3R	8531766	3R_8531766_SNP [dm3] 3R_12706044_SNP [dm6]	A	G	8.496e^-5	0.264	SPLICE_SITE_REGION mus308 DOWNSTREAM CG12279 INTRON mus308	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	5717361	3L_5717361_DEL [dm3] 3L_5724261_DEL [dm6]	TT	T	8.531e^-5	0.264	INTRON sif
2L	3678958	2L_3678958_SNP [dm3] 2L_3678958_SNP [dm6]	C	G	8.554e^-5	0.264	INTRON CG34340
2L	8561271	2L_8561271_SNP [dm3] 2L_8561271_SNP [dm6]	C	T	8.576e^-5	0.264	INTRON Sema-1a
3L	14378232	3L_14378232_DEL [dm3] 3L_14385132_DEL [dm6]	GAACTTCGATTTTAAGGGG...	G	8.593e^-5	0.264	INTERGENIC
3R	9552543	3R_9552543_DEL [dm3] 3R_13726821_DEL [dm6]	TAAATG	T	8.596e^-5	0.264	INTRON CG34383
3R	15877860	3R_15877860_SNP [dm3] 3R_20052138_SNP [dm6]	C	A	8.600e^-5	0.264	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	17194504	2L_17194504_SNP [dm3] 2L_17194504_SNP [dm6]	C	A	8.605e^-5	0.264	INTRON beat-IIIc
3R	15344139	3R_15344139_SNP [dm3] 3R_19518417_SNP [dm6]	A	G	8.607e^-5	0.264	INTRON Dys
3R	15882815	3R_15882815_SNP [dm3] 3R_20057093_SNP [dm6]	G	A	8.616e^-5	0.264	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15888947	3R_15888947_SNP [dm3] 3R_20063225_SNP [dm6]	C	T	8.637e^-5	0.264	INTERGENIC
3R	15564564	3R_15564564_SNP [dm3] 3R_19738842_SNP [dm6]	C	T	8.661e^-5	0.264	INTRON GluClalpha
2R	9387828	2R_9387828_SNP [dm3] 2R_13500323_SNP [dm6]	G	A	8.678e^-5	0.264	UPSTREAM mars INTRON drk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10531114	3L_10531114_INS [dm3] 3L_10538014_INS [dm6]	T	TCT	8.688e^-5	0.264	INTRON A2bp1
2L	12308165	2L_12308165_SNP [dm3] 2L_12308165_SNP [dm6]	T	C	8.689e^-5	0.264	INTRON aret
3R	15895306	3R_15895306_INS [dm3] 3R_20069584_INS [dm6]	T	TTTCTTGGCT	8.707e^-5	0.264	INTERGENIC
2L	14846877	2L_14846877_SNP [dm3] 2L_14846877_SNP [dm6]	T	C	8.717e^-5	0.264	NON_SYNONYMOUS_CODING CG15279 INTRON CG15279
3R	8920877	3R_8920877_SNP [dm3] 3R_13095155_SNP [dm6]	C	T	8.785e^-5	0.266	INTRON timeout
2R	16546402	2R_16546402_SNP [dm3] 2R_20658897_SNP [dm6]	G	A	8.816e^-5	0.266	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211 DOWNSTREAM tRNA:CR30155	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1329977	2R_1329977_SNP [dm3] 2R_5442472_SNP [dm6]	T	A	8.830e^-5	0.266	INTRON laccase2	transposable element FlyBase
3L	12321291	3L_12321291_DEL [dm3] 3L_12328191_DEL [dm6]	AATACTA	A	8.871e^-5	0.267	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10176571	X_10176571_SNP [dm3] X_10282538_SNP [dm6]	C	T	8.893e^-5	0.267	INTRON alpha-Man-I
3L	13962394	3L_13962394_SNP [dm3] 3L_13969294_SNP [dm6]	A	G	8.908e^-5	0.267	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
2R	13815164	2R_13815164_SNP [dm3] 2R_17927659_SNP [dm6]	G	T	8.923e^-5	0.267	DOWNSTREAM Elk INTERGENIC
2L	12275284	2L_12275284_INS [dm3] 2L_12275284_INS [dm6]	A	AAAA	8.923e^-5	0.267	INTRON aret
X	15501969	X_15501969_SNP [dm3] X_15607936_SNP [dm6]	C	T	8.947e^-5	0.267	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14105267	3L_14105267_DEL [dm3] 3L_14112167_DEL [dm6]	TC	T	8.951e^-5	0.267	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3390792	2L_3390792_INS [dm3] 2L_3390792_INS [dm6]	G	GG	8.963e^-5	0.267	INTERGENIC
2R	10857353	2R_10857353_SNP [dm3] 2R_14969848_SNP [dm6]	G	A	9.021e^-5	0.268	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	11007794	3L_11007794_DEL [dm3] 3L_11014694_DEL [dm6]	TCTTTACATGTTTCTT...	T	9.033e^-5	0.268	INTERGENIC
3L	17537339	3L_17537339_SNP [dm3] 3L_17544239_SNP [dm6]	T	A	9.054e^-5	0.268	INTRON Nedd4
3L	10859766	3L_10859766_SNP [dm3] 3L_10866666_SNP [dm6]	G	A	9.063e^-5	0.268	INTRON tna
2L	13926393	2L_13926393_INS [dm3] 2L_13926393_INS [dm6]	A	AA	9.065e^-5	0.268	INTRON Ance-3
3R	25487079	3R_25487079_DEL [dm3] 3R_29661357_DEL [dm6]	CG	C	9.078e^-5	0.268	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15769469	3L_15769469_DEL [dm3] 3L_15776369_DEL [dm6]	ACCACTGAGGA...	A	9.099e^-5	0.268	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26980860	3R_26980860_DEL [dm3] 3R_31155138_DEL [dm6]	AGAGCAAACTTCACGTTTAG...	A	9.124e^-5	0.268	INTRON Gycbeta100B
3L	10679656	3L_10679656_DEL [dm3] 3L_10686556_DEL [dm6]	GCATTGGTG	G	9.139e^-5	0.268	INTRON simj	TF binding site BDTNP1_TFBS_dl
X	10259321	X_10259321_SNP [dm3] X_10365288_SNP [dm6]	T	G	9.165e^-5	0.268	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19974640	3R_19974640_SNP [dm3] 3R_24148918_SNP [dm6]	T	C	9.165e^-5	0.268	UTR_5_PRIME Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	5944434	3L_5944434_INS [dm3] 3L_5951334_INS [dm6]	A	AGTTAATTA	9.185e^-5	0.268	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18066920	2R_18066920_DEL [dm3] 2R_22179415_DEL [dm6]	TT	T	9.188e^-5	0.268	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14762276	2R_14762276_SNP [dm3] 2R_18874771_SNP [dm6]	T	A	9.228e^-5	0.269	INTERGENIC
X	3659591	X_3659591_DEL [dm3] X_3765558_DEL [dm6]	TGTGT	T	9.238e^-5	0.269	INTRON tlk
2R	17911893	2R_17911893_SNP [dm3] 2R_22024388_SNP [dm6]	G	T	9.263e^-5	0.269	INTRON CG34370
3L	6441159	3L_6441159_SNP [dm3] 3L_6448059_SNP [dm6]	C	T	9.265e^-5	0.269	INTRON CG42747
2R	18059760	2R_18059760_SNP [dm3] 2R_22172255_SNP [dm6]	A	G	9.283e^-5	0.269	SPLICE_SITE_REGION a DOWNSTREAM CG3045 INTRON a
3R	22671449	3R_22671449_SNP [dm3] 3R_26845727_SNP [dm6]	A	C	9.296e^-5	0.269	INTRON Lerp
3R	22034502	3R_22034502_SNP [dm3] 3R_26208780_SNP [dm6]	A	G	9.319e^-5	0.269	INTRON CR44320
3L	10161434	3L_10161434_SNP [dm3] 3L_10168334_SNP [dm6]	A	G	9.366e^-5	0.269	INTRON dpr10
2R	16626348	2R_16626348_SNP [dm3] 2R_20738843_SNP [dm6]	T	C	9.373e^-5	0.269	INTRON dpr
2L	4682753	2L_4682753_SNP [dm3] 2L_4682753_SNP [dm6]	T	G	9.378e^-5	0.269	START_GAINED CG11929 UTR_5_PRIME CG11929 DOWNSTREAM Bsg25A
X	7249886	X_7249886_DEL [dm3] X_7355853_DEL [dm6]	AGGA	A	9.384e^-5	0.269	INTRON CR44357 & 1 other
2R	765916	2R_765916_DEL [dm3] 2R_4878411_DEL [dm6]	AGA	A	9.390e^-5	0.269	INTERGENIC
2L	20868588	2L_20868588_SNP [dm3] 2L_20868588_SNP [dm6]	G	A	9.410e^-5	0.269	DOWNSTREAM CG9338 INTRON CG31675
3R	14543660	3R_14543660_SNP [dm3] 3R_18717938_SNP [dm6]	A	G	9.502e^-5	0.269	UTR_3_PRIME VAChT INTRON Cha
2L	21012191	2L_21012191_SNP [dm3] 2L_21012191_SNP [dm6]	T	A	9.514e^-5	0.269	INTRON CG42238
3L	3013639	3L_3013639_SNP [dm3] 3L_3013639_SNP [dm6]	T	G	9.515e^-5	0.269	INTERGENIC
2R	17920666	2R_17920666_SNP [dm3] 2R_22033161_SNP [dm6]	T	C	9.520e^-5	0.269	INTRON CG34370
3L	6309922	3L_6309922_DEL [dm3] 3L_6316822_DEL [dm6]	CTTATAGGAAAC...	C	9.523e^-5	0.269	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	10508110	2R_10508110_INS [dm3] 2R_14620605_INS [dm6]	A	AGAA	9.539e^-5	0.269	UPSTREAM Uhg5 DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25519572	3R_25519572_SNP [dm3] 3R_29693850_SNP [dm6]	A	G	9.543e^-5	0.269	INTRON dmrt99B	TF binding site mE1_TFBS_chinmo
X	20521782	X_20521782_DEL [dm3] X_20650755_DEL [dm6]	GG	G	9.548e^-5	0.269	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	21154067	3L_21154067_SNP [dm3] 3L_21160967_SNP [dm6]	C	T	9.578e^-5	0.269	UTR_5_PRIME Ac78C
3L	15454131	3L_15454131_INS [dm3] 3L_15461031_INS [dm6]	G	GCAG	9.595e^-5	0.269	INTERGENIC
3R	10530161	3R_10530161_DEL [dm3] 3R_14704439_DEL [dm6]	GTCTGTCTGTCTGTTGATTG...	G	9.602e^-5	0.269	INTRON kibra
2L	2852683	2L_2852683_SNP [dm3] 2L_2852683_SNP [dm6]	G	A	9.603e^-5	0.269	INTRON CG3104
3R	15512379	3R_15512379_INS [dm3] 3R_19686657_INS [dm6]	A	AA	9.606e^-5	0.269	UPSTREAM Naam INTRON Naam
2L	2869563	2L_2869563_DEL [dm3] 2L_2869563_DEL [dm6]	AA	G	9.606e^-5	0.269	UPSTREAM CG8813 INTRON CG31694	TF binding site mE1_TFBS_cad
3R	17827272	3R_17827272_SNP [dm3] 3R_22001550_SNP [dm6]	T	C	9.703e^-5	0.271	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	4573729	X_4573729_SNP [dm3] X_4679696_SNP [dm6]	T	C	9.708e^-5	0.271	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19805947	3L_19805947_SNP [dm3] 3L_19812847_SNP [dm6]	C	T	9.790e^-5	0.273	DOWNSTREAM cyc INTRON Cyp305a1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7651275	3L_7651275_SNP [dm3] 3L_7658175_SNP [dm6]	G	A	9.834e^-5	0.274	SYNONYMOUS_CODING Ank2 DOWNSTREAM CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
2R	17247948	2R_17247948_DEL [dm3] 2R_21360443_DEL [dm6]	AA	A	9.876e^-5	0.274	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24803915	3R_24803915_SNP [dm3] 3R_28978193_SNP [dm6]	T	C	9.938e^-5	0.276	INTERGENIC
X	11252641	X_11252641_INS [dm3] X_11358608_INS [dm6]	G	GTGTTTGAGTGCAGGAACG...	9.954e^-5	0.276	UTR_3_PRIME dsh UPSTREAM Pa1	TF binding site BDTNP1_TFBS_dl
2R	9148600	2R_9148600_SNP [dm3] 2R_13261095_SNP [dm6]	C	G	9.983e^-5	0.276	INTRON CG42319
2R	18129422	2R_18129422_SNP [dm3] 2R_22241917_SNP [dm6]	A	G	9.990e^-5	0.276	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
X	5683407	X_5683407_SNP [dm3] X_5789374_SNP [dm6]	C	A	9.995e^-5	0.276	UTR_3_PRIME CG42699 UPSTREAM CG15767
3R	15884263	3R_15884263_SNP [dm3] 3R_20058541_SNP [dm6]	C	G	1.001e^-4	0.276	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	9918493	2L_9918493_DEL [dm3] 2L_9918493_DEL [dm6]	GGCTTACTGGG...	AACTACC	1.004e^-4	0.276	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17665018	2L_17665018_DEL [dm3] 2L_17665018_DEL [dm6]	ACCCCA	A	1.004e^-4	0.276	INTRON CadN
3L	21142043	3L_21142043_SNP [dm3] 3L_21148943_SNP [dm6]	C	G	1.008e^-4	0.276	INTRON Ac78C
2L	4683467	2L_4683467_SNP [dm3] 2L_4683467_SNP [dm6]	G	C	1.009e^-4	0.276	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl
3R	26277600	3R_26277600_SNP [dm3] 3R_30451878_SNP [dm6]	A	T	1.009e^-4	0.276	INTRON aralar1
2L	15866651	2L_15866651_INS [dm3] 2L_15866651_INS [dm6]	T	TGAGAGGCTATT...	1.011e^-4	0.276	INTERGENIC
X	6650563	X_6650563_SNP [dm3] X_6756530_SNP [dm6]	C	A	1.016e^-4	0.277	UTR_5_PRIME CG14438 DOWNSTREAM CG14439	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21519532	3R_21519532_SNP [dm3] 3R_25693810_SNP [dm6]	C	A	1.018e^-4	0.277	INTERGENIC
3R	11955907	3R_11955907_SNP [dm3] 3R_16130185_SNP [dm6]	T	C	1.021e^-4	0.277	INTRON Sb
2L	8748745	2L_8748745_INS [dm3] 2L_8748745_INS [dm6]	G	GCAAT	1.022e^-4	0.277	INTERGENIC
3R	15166684	3R_15166684_DEL [dm3] 3R_19340962_DEL [dm6]	CCTTGGTC	C	1.023e^-4	0.277	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	1242672	2R_1242672_SNP [dm3] 2R_5355167_SNP [dm6]	A	T	1.024e^-4	0.277	DOWNSTREAM CG10396 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15081396	3R_15081396_SNP [dm3] 3R_19255674_SNP [dm6]	T	A	1.026e^-4	0.277	INTERGENIC
2R	1689055	2R_1689055_DEL [dm3] 2R_5801550_DEL [dm6]	TATGTACATATGTGTATGT...	T	1.029e^-4	0.278	INTERGENIC
2R	16545958	2R_16545958_SNP [dm3] 2R_20658453_SNP [dm6]	G	A	1.031e^-4	0.278	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211 DOWNSTREAM tRNA:CR30155
2L	4676089	2L_4676089_INS [dm3] 2L_4676089_INS [dm6]	A	ATTCTATTCTA...	1.036e^-4	0.279	INTERGENIC
3R	10572386	3R_10572386_SNP [dm3] 3R_14746664_SNP [dm6]	G	A	1.037e^-4	0.279	SYNONYMOUS_CODING smp-30 INTRON jvl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	24169589	3L_24169589_SNP [dm3] 3L_24176489_SNP [dm6]	T	C	1.039e^-4	0.279	INTRON Snap25
3R	5753573	3R_5753573_SNP [dm3] 3R_9927851_SNP [dm6]	C	T	1.043e^-4	0.279	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15501924	X_15501924_SNP [dm3] X_15607891_SNP [dm6]	T	C	1.045e^-4	0.279	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15091274	2L_15091274_DEL [dm3] 2L_15091274_DEL [dm6]	TAGCTCTT	T	1.045e^-4	0.279	INTRON CG15270
2L	12289242	2L_12289242_SNP [dm3] 2L_12289242_SNP [dm6]	T	C	1.046e^-4	0.279	UTR_5_PRIME aret INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13676346	X_13676346_SNP [dm3] X_13782313_SNP [dm6]	C	T	1.046e^-4	0.279	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2954183	3L_2954183_SNP [dm3] 3L_2954183_SNP [dm6]	A	T	1.055e^-4	0.28	DOWNSTREAM Shab INTRON Shab
X	11368736	X_11368736_SNP [dm3] X_11474703_SNP [dm6]	G	A	1.055e^-4	0.28	INTRON CG43155
2R	2395174	2R_2395174_SNP [dm3] 2R_6507669_SNP [dm6]	C	T	1.060e^-4	0.281	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17300036	3R_17300036_SNP [dm3] 3R_21474314_SNP [dm6]	G	A	1.065e^-4	0.282	INTERGENIC
3R	13724636	3R_13724636_SNP [dm3] 3R_17898914_SNP [dm6]	T	A	1.068e^-4	0.282	INTRON Rim
3R	5773950	3R_5773950_SNP [dm3] 3R_9948228_SNP [dm6]	T	A	1.069e^-4	0.282	INTRON Glut4EF
2R	10063877	2R_10063877_SNP [dm3] 2R_14176372_SNP [dm6]	C	T	1.071e^-4	0.282	INTRON cg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	14617502	2R_14617502_SNP [dm3] 2R_18729997_SNP [dm6]	G	A	1.074e^-4	0.282	SYNONYMOUS_CODING List INTRON Hs3st-A
3R	25547228	3R_25547228_SNP [dm3] 3R_29721506_SNP [dm6]	C	T	1.074e^-4	0.282	INTRON CG15506	TF binding site mE1_TFBS_chinmo
2R	14238949	2R_14238949_INS [dm3] 2R_18351444_INS [dm6]	T	TT	1.076e^-4	0.282	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	6461666	2L_6461666_INS [dm3] 2L_6461666_INS [dm6]	C	CATTGAGC	1.077e^-4	0.282	INTRON CG16947
3L	594329	3L_594329_INS [dm3] 3L_594329_INS [dm6]	G	GACTTA	1.078e^-4	0.282	INTRON MED14	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13643345	2L_13643345_SNP [dm3] 2L_13643345_SNP [dm6]	T	C	1.080e^-4	0.282	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
3L	76235	3L_76235_DEL [dm3] 3L_76235_DEL [dm6]	CC	C	1.084e^-4	0.282	UPSTREAM CG13405 INTERGENIC
2R	8078006	2R_8078006_INS [dm3] 2R_12190501_INS [dm6]	G	GG	1.084e^-4	0.282	UPSTREAM Cyp6t3 & 1 other INTERGENIC
3R	21005367	3R_21005367_DEL [dm3] 3R_25179645_DEL [dm6]	CAC	C	1.085e^-4	0.282	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13676350	X_13676350_SNP [dm3] X_13782317_SNP [dm6]	T	C	1.087e^-4	0.282	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12209853	2L_12209853_SNP [dm3] 2L_12209853_SNP [dm6]	T	A	1.087e^-4	0.282	SYNONYMOUS_CODING CG31759 INTRON aret
2L	1708700	2L_1708700_SNP [dm3] 2L_1708700_SNP [dm6]	A	G	1.090e^-4	0.283	INTRON CG17660 EXON CR44976	TF binding site mE1_TFBS_cad
3L	6898721	3L_6898721_DEL [dm3] 3L_6905621_DEL [dm6]	TCCCGACT	T	1.101e^-4	0.285	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16432118	3L_16432118_SNP [dm3] 3L_16439018_SNP [dm6]	C	G	1.105e^-4	0.286	INTRON CG33158 & 1 other
3R	11863515	3R_11863515_SNP [dm3] 3R_16037793_SNP [dm6]	G	C	1.108e^-4	0.286	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3R	8532125	3R_8532125_SNP [dm3] 3R_12706403_SNP [dm6]	A	C	1.112e^-4	0.287	SYNONYMOUS_CODING mus308 DOWNSTREAM CG12279	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	14644126	3L_14644126_SNP [dm3] 3L_14651026_SNP [dm6]	A	T	1.116e^-4	0.288	INTRON dlp	TF binding site mE1_TFBS_cnc
3L	19271844	3L_19271844_SNP [dm3] 3L_19278744_SNP [dm6]	A	T	1.122e^-4	0.288	INTRON CG14086
2R	19460339	2R_19460339_INS [dm3] 2R_23572816_INS [dm6]	A	AA	1.122e^-4	0.288	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_Trl
3R	24803910	3R_24803910_SNP [dm3] 3R_28978188_SNP [dm6]	G	A	1.124e^-4	0.288	INTERGENIC
3R	19585793	3R_19585793_SNP [dm3] 3R_23760071_SNP [dm6]	T	C	1.125e^-4	0.288	SYNONYMOUS_CODING CG10219 DOWNSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25487368	3R_25487368_SNP [dm3] 3R_29661646_SNP [dm6]	T	A	1.130e^-4	0.288	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7084996	2R_7084996_DEL [dm3] 2R_11197491_DEL [dm6]	TATTCTT	T	1.132e^-4	0.288	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
X	14482626	X_14482626_DEL [dm3] X_14588593_DEL [dm6]	GG	G	1.133e^-4	0.288	INTRON CG9413
3R	9552554	3R_9552554_DEL [dm3] 3R_13726832_DEL [dm6]	TAAA	T	1.133e^-4	0.288	INTRON CG34383
2R	15396223	2R_15396223_SNP [dm3] 2R_19508718_SNP [dm6]	A	C	1.138e^-4	0.288	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4680548	2L_4680548_DEL [dm3] 2L_4680548_DEL [dm6]	AA	A	1.138e^-4	0.288	INTERGENIC
3R	9552551	3R_9552551_DEL [dm3] 3R_13726829_DEL [dm6]	TG	T	1.139e^-4	0.288	INTRON CG34383
3L	14125569	3L_14125569_INS [dm3] 3L_14132469_INS [dm6]	T	TT	1.140e^-4	0.288	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	15875812	3R_15875812_SNP [dm3] 3R_20050090_SNP [dm6]	C	A	1.140e^-4	0.288	INTRON CG17193
X	19863826	X_19863826_DEL [dm3] X_19969793_DEL [dm6]	TT	T	1.140e^-4	0.288	DOWNSTREAM Nep3 INTERGENIC
3R	25222382	3R_25222382_DEL [dm3] 3R_29396660_DEL [dm6]	AG	A	1.142e^-4	0.288	INTRON Ptp99A
X	14260612	X_14260612_DEL [dm3] X_14366579_DEL [dm6]	TGA	T	1.143e^-4	0.288	INTRON dpr8
2L	7409004	2L_7409004_DEL [dm3] 2L_7409004_DEL [dm6]	GCTATCCCGCGTCTGTAG...	G	1.144e^-4	0.288	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
X	3920530	X_3920530_DEL [dm3] X_4026497_DEL [dm6]	GAAG	G	1.144e^-4	0.288	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	16242189	3R_16242189_INS [dm3] 3R_20416467_INS [dm6]	C	CG	1.149e^-4	0.288	INTRON Gfrl
3L	13873036	3L_13873036_SNP [dm3] 3L_13879936_SNP [dm6]	T	G	1.150e^-4	0.288	INTRON dysc & 1 other
3L	13186644	3L_13186644_SNP [dm3] 3L_13193544_SNP [dm6]	T	A	1.151e^-4	0.288	INTERGENIC
2R	2112108	2R_2112108_SNP [dm3] 2R_6224603_SNP [dm6]	A	G	1.155e^-4	0.289	INTRON bin3	TF binding site BDTNP1_TFBS_hb
2L	12279600	2L_12279600_DEL [dm3] 2L_12279600_DEL [dm6]	GCCTCG	G	1.164e^-4	0.29	INTRON aret
2L	5003702	2L_5003702_DEL [dm3] 2L_5003702_DEL [dm6]	ATGTA	A	1.164e^-4	0.29	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	7267421	2L_7267421_DEL [dm3] 2L_7267421_DEL [dm6]	AGCTCCA	A	1.166e^-4	0.291	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15885498	3R_15885498_SNP [dm3] 3R_20059776_SNP [dm6]	A	T	1.170e^-4	0.291	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
3L	18503519	3L_18503519_INS [dm3] 3L_18510419_INS [dm6]	G	GGGT	1.170e^-4	0.291	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	18124891	2R_18124891_DEL [dm3] 2R_22237386_DEL [dm6]	CAGCCC	C	1.172e^-4	0.291	UPSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_sens
X	4573741	X_4573741_SNP [dm3] X_4679708_SNP [dm6]	T	C	1.174e^-4	0.291	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9234949	2R_9234949_SNP [dm3] 2R_13347444_SNP [dm6]	T	C	1.174e^-4	0.291	INTRON CR44206
2R	5188497	2R_5188497_DEL [dm3] 2R_9300992_DEL [dm6]	TATT	T	1.176e^-4	0.291	UTR_3_PRIME Drep-2
3R	15812327	3R_15812327_SNP [dm3] 3R_19986605_SNP [dm6]	A	T	1.179e^-4	0.291	INTRON Hs6st
3R	25222566	3R_25222566_SNP [dm3] 3R_29396844_SNP [dm6]	C	T	1.180e^-4	0.291	INTRON Ptp99A
2R	567033	2R_567033_SNP [dm3] 2R_4679528_SNP [dm6]	C	T	1.183e^-4	0.291	INTERGENIC
2L	426698	2L_426698_SNP [dm3] 2L_426698_SNP [dm6]	G	A	1.187e^-4	0.291	INTERGENIC
X	20571220	X_20571220_SNP [dm3] X_20700193_SNP [dm6]	A	T	1.187e^-4	0.291	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	20652144	3R_20652144_DEL [dm3] 3R_24826422_DEL [dm6]	ATATTTA	A	1.189e^-4	0.291	CODON_DELETION CG43166 UPSTREAM niki DOWNSTREAM RabX4
3R	25580266	3R_25580266_INS [dm3] 3R_29754544_INS [dm6]	G	AA	1.191e^-4	0.291	DOWNSTREAM CR44953 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14860552	3R_14860552_SNP [dm3] 3R_19034830_SNP [dm6]	C	T	1.196e^-4	0.291	INTRON CG6026
3R	15811085	3R_15811085_INS [dm3] 3R_19985363_INS [dm6]	C	CCAC	1.197e^-4	0.291	INTRON Hs6st
2R	7143187	2R_7143187_SNP [dm3] 2R_11255682_SNP [dm6]	A	G	1.197e^-4	0.291	SYNONYMOUS_CODING Cpr47Eb UPSTREAM CG13223
3R	23628844	3R_23628844_SNP [dm3] 3R_27803122_SNP [dm6]	G	A	1.204e^-4	0.291	INTRON CG34353
2R	10182386	2R_10182386_DEL [dm3] 2R_14294881_DEL [dm6]	TGCTTTAAAGGGACTAGGCA...	T	1.204e^-4	0.291	UTR_3_PRIME Ih INTRON Ih
3R	6690672	3R_6690672_DEL [dm3] 3R_10864950_DEL [dm6]	TATAC	T	1.206e^-4	0.291	UTR_3_PRIME SelR INTRON SelR
2R	13896545	2R_13896545_SNP [dm3] 2R_18009040_SNP [dm6]	T	C	1.208e^-4	0.291	INTERGENIC
2R	18552799	2R_18552799_DEL [dm3] 2R_22665294_DEL [dm6]	GTGTT	G	1.209e^-4	0.291	UPSTREAM CG42867 DOWNSTREAM CG4250 & 1 other INTERGENIC
3R	15895308	3R_15895308_SNP [dm3] 3R_20069586_SNP [dm6]	C	T	1.210e^-4	0.291	INTERGENIC
3R	15241941	3R_15241941_SNP [dm3] 3R_19416219_SNP [dm6]	A	C	1.216e^-4	0.291	SYNONYMOUS_CODING CG31221
2L	7153675	2L_7153675_SNP [dm3] 2L_7153675_SNP [dm6]	G	A	1.217e^-4	0.291	INTRON Pvf3
3R	8532044	3R_8532044_SNP [dm3] 3R_12706322_SNP [dm6]	T	C	1.219e^-4	0.291	SYNONYMOUS_CODING mus308 DOWNSTREAM CG12279	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	22532527	3R_22532527_SNP [dm3] 3R_26706805_SNP [dm6]	G	A	1.220e^-4	0.291	INTRON amon
X	6936074	X_6936074_SNP [dm3] X_7042041_SNP [dm6]	C	T	1.222e^-4	0.291	DOWNSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8854866	2L_8854866_SNP [dm3] 2L_8854866_SNP [dm6]	A	C	1.224e^-4	0.291	INTERGENIC
2R	7834188	2R_7834188_SNP [dm3] 2R_11946683_SNP [dm6]	A	T	1.224e^-4	0.291	INTRON CG13188
3R	26269112	3R_26269112_SNP [dm3] 3R_30443390_SNP [dm6]	T	A	1.224e^-4	0.291	UTR_5_PRIME CG15537 DOWNSTREAM Osi23
3R	15023682	3R_15023682_DEL [dm3] 3R_19197960_DEL [dm6]	TT	T	1.224e^-4	0.291	INTRON CG31475
2L	6787769	2L_6787769_DEL [dm3] 2L_6787769_DEL [dm6]	TCT	T	1.230e^-4	0.291	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	9707732	X_9707732_SNP [dm3] X_9813699_SNP [dm6]	A	T	1.231e^-4	0.291	INTRON CG32698
2L	13988325	2L_13988325_DEL [dm3] 2L_13988325_DEL [dm6]	AAATCACTTAATAAGC...	A	1.233e^-4	0.291	INTRON rk
3L	17881694	3L_17881694_DEL [dm3] 3L_17888594_DEL [dm6]	ACATGTACA	A	1.233e^-4	0.291	INTRON CG7402
2L	21050757	2L_21050757_DEL [dm3] 2L_21050757_DEL [dm6]	TTATAGAT	T	1.237e^-4	0.291	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14269190	2L_14269190_SNP [dm3] 2L_14269190_SNP [dm6]	C	A	1.238e^-4	0.291	INTRON wb	TF binding site mE1_TFBS_sens
3R	25342166	3R_25342166_SNP [dm3] 3R_29516444_SNP [dm6]	A	C	1.247e^-4	0.291	SYNONYMOUS_CODING CG2014	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	978971	3L_978971_SNP [dm3] 3L_978971_SNP [dm6]	C	T	1.247e^-4	0.291	INTRON Glut1
2R	18059962	2R_18059962_DEL [dm3] 2R_22172457_DEL [dm6]	TATT	T	1.249e^-4	0.291	DOWNSTREAM CG3045 INTRON a
2R	8535153	2R_8535153_INS [dm3] 2R_12647648_INS [dm6]	G	GG	1.250e^-4	0.291	INTRON CG8785
3R	14173864	3R_14173864_INS [dm3] 3R_18348142_INS [dm6]	G	GTGTAATGGGTAATG...	1.252e^-4	0.291	INTRON CG15803
3R	24803908	3R_24803908_SNP [dm3] 3R_28978186_SNP [dm6]	A	G	1.254e^-4	0.291	INTERGENIC
3L	13534518	3L_13534518_SNP [dm3] 3L_13541418_SNP [dm6]	T	A	1.258e^-4	0.291	INTRON bru-3
X	14260620	X_14260620_SNP [dm3] X_14366587_SNP [dm6]	A	T	1.258e^-4	0.291	INTRON dpr8
3L	14788830	3L_14788830_SNP [dm3] 3L_14795730_SNP [dm6]	C	A	1.258e^-4	0.291	SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4678870	2L_4678870_SNP [dm3] 2L_4678870_SNP [dm6]	T	A	1.258e^-4	0.291	INTERGENIC
X	10012641	X_10012641_SNP [dm3] X_10118608_SNP [dm6]	A	T	1.259e^-4	0.291	INTRON RhoU & 1 other
3L	4725679	3L_4725679_SNP [dm3] 3L_4725679_SNP [dm6]	C	A	1.260e^-4	0.291	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8113257	2L_8113257_SNP [dm3] 2L_8113257_SNP [dm6]	A	C	1.262e^-4	0.291	UTR_3_PRIME Bsg
3R	10126803	3R_10126803_SNP [dm3] 3R_14301081_SNP [dm6]	A	G	1.262e^-4	0.291	INTRON CG12207	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	25222387	3R_25222387_INS [dm3] 3R_29396665_INS [dm6]	GC	AGATA	1.263e^-4	0.291	INTRON Ptp99A
3L	17057244	3L_17057244_SNP [dm3] 3L_17064144_SNP [dm6]	C	T	1.263e^-4	0.291	UTR_3_PRIME Rbp6
X	7802916	X_7802916_DEL [dm3] X_7908883_DEL [dm6]	AC	A	1.266e^-4	0.291	UPSTREAM CG1444 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25222390	3R_25222390_SNP [dm3] 3R_29396668_SNP [dm6]	A	T	1.266e^-4	0.291	INTRON Ptp99A
3R	18356757	3R_18356757_SNP [dm3] 3R_22531035_SNP [dm6]	G	A	1.266e^-4	0.291	UPSTREAM CG33099 INTRON CG33093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13355483	3L_13355483_DEL [dm3] 3L_13362383_DEL [dm6]	AT	A	1.267e^-4	0.291	INTERGENIC
2R	567032	2R_567032_SNP [dm3] 2R_4679527_SNP [dm6]	C	T	1.270e^-4	0.291	INTERGENIC
3L	10528364	3L_10528364_SNP [dm3] 3L_10535264_SNP [dm6]	C	A	1.271e^-4	0.291	INTRON A2bp1
2L	18004694	2L_18004694_DEL [dm3] 2L_18004694_DEL [dm6]	AGGAACCCAAAATA...	A	1.273e^-4	0.291	INTERGENIC
3L	983375	3L_983375_DEL [dm3] 3L_983375_DEL [dm6]	CT	C	1.274e^-4	0.291	DOWNSTREAM Glut1 INTRON Glut1
3L	18552944	3L_18552944_DEL [dm3] 3L_18559844_DEL [dm6]	ACTTTG	A	1.274e^-4	0.291	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14798741	2L_14798741_SNP [dm3] 2L_14798741_SNP [dm6]	A	G	1.274e^-4	0.291	INTERGENIC
2L	8854896	2L_8854896_INS [dm3] 2L_8854896_INS [dm6]	A	CCCCAACTTAT...	1.275e^-4	0.291	INTERGENIC
3R	13559090	3R_13559090_SNP [dm3] 3R_17733368_SNP [dm6]	A	T	1.277e^-4	0.291	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8121006	2L_8121006_SNP [dm3] 2L_8121006_SNP [dm6]	G	A	1.278e^-4	0.291	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18606034	3R_18606034_DEL [dm3] 3R_22780312_DEL [dm6]	TGAT	T	1.278e^-4	0.291	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20571225	X_20571225_SNP [dm3] X_20700198_SNP [dm6]	G	C	1.278e^-4	0.291	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	8549142	X_8549142_DEL [dm3] X_8655109_DEL [dm6]	CCCGCTGCGGCTTAA...	C	1.278e^-4	0.291	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5288936	3L_5288936_DEL [dm3] 3L_5295836_DEL [dm6]	TA	G	1.279e^-4	0.291	INTERGENIC
X	14522746	X_14522746_SNP [dm3] X_14628713_SNP [dm6]	T	C	1.283e^-4	0.291	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	17369171	3L_17369171_INS [dm3] 3L_17376071_INS [dm6]	A	AAATC	1.284e^-4	0.291	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15056515	2R_15056515_SNP [dm3] 2R_19169010_SNP [dm6]	A	C	1.285e^-4	0.291	INTRON CG10737
X	15491447	X_15491447_SNP [dm3] X_15597414_SNP [dm6]	C	T	1.287e^-4	0.291	INTERGENIC
3R	15876894	3R_15876894_SNP [dm3] 3R_20051172_SNP [dm6]	T	G	1.287e^-4	0.291	INTRON CG17193
X	7147624	X_7147624_SNP [dm3] X_7253591_SNP [dm6]	T	A	1.289e^-4	0.291	INTRON CR44357
2L	4256555	2L_4256555_DEL [dm3] 2L_4256555_DEL [dm6]	TT	T	1.289e^-4	0.291	UPSTREAM CR45294 & 1 other DOWNSTREAM CR45296 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	3393838	2L_3393838_DEL [dm3] 2L_3393838_DEL [dm6]	GGAAGCCCACTTGCTCTCTT...	G	1.292e^-4	0.291	INTERGENIC
3L	4174335	3L_4174335_INS [dm3] 3L_4174335_INS [dm6]	C	CCTTTTC	1.295e^-4	0.291	DOWNSTREAM Ero1L & 1 other INTRON CG18675	TF binding site mE1_TFBS_sens
3L	6520127	3L_6520127_DEL [dm3] 3L_6527027_DEL [dm6]	TGGA	T	1.299e^-4	0.291	INTRON sfl
X	6091975	X_6091975_SNP [dm3] X_6197942_SNP [dm6]	G	A	1.299e^-4	0.291	SYNONYMOUS_CODING CG32751
2R	9759021	2R_9759021_SNP [dm3] 2R_13871516_SNP [dm6]	T	A	1.299e^-4	0.291	INTRON shot	TF binding site mE1_TFBS_cad
3R	15875938	3R_15875938_SNP [dm3] 3R_20050216_SNP [dm6]	A	T	1.302e^-4	0.291	INTRON CG17193
3R	15893441	3R_15893441_SNP [dm3] 3R_20067719_SNP [dm6]	A	G	1.302e^-4	0.291	INTERGENIC
3R	4176758	3R_4176758_SNP [dm3] 3R_8351036_SNP [dm6]	A	G	1.306e^-4	0.291	SYNONYMOUS_CODING Atg13	TF binding site mE1_TFBS_sens
2R	10553066	2R_10553066_SNP [dm3] 2R_14665561_SNP [dm6]	C	G	1.311e^-4	0.291	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3L	15944652	3L_15944652_SNP [dm3] 3L_15951552_SNP [dm6]	C	A	1.311e^-4	0.291	INTRON Pka-C3
2L	14399184	2L_14399184_SNP [dm3] 2L_14399184_SNP [dm6]	A	G	1.313e^-4	0.291	INTRON elB
2R	10063613	2R_10063613_SNP [dm3] 2R_14176108_SNP [dm6]	T	G	1.313e^-4	0.291	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9552529	3R_9552529_SNP [dm3] 3R_13726807_SNP [dm6]	T	G	1.314e^-4	0.291	INTRON CG34383
2R	7125274	2R_7125274_DEL [dm3] 2R_11237769_DEL [dm6]	CTC	T	1.315e^-4	0.291	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19818804	3R_19818804_INS [dm3] 3R_23993082_INS [dm6]	T	TT	1.316e^-4	0.291	UTR_5_PRIME Rab7 UPSTREAM Rab7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	4586242	2L_4586242_SNP [dm3] 2L_4586242_SNP [dm6]	G	A	1.316e^-4	0.291	INTRON dp
2L	7133434	2L_7133434_DEL [dm3] 2L_7133434_DEL [dm6]	AC	G	1.316e^-4	0.291	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6520153	3L_6520153_SNP [dm3] 3L_6527053_SNP [dm6]	T	A	1.318e^-4	0.291	INTRON sfl
2L	18044757	2L_18044757_DEL [dm3] 2L_18044757_DEL [dm6]	GGCCCTG	G	1.318e^-4	0.291	INTRON rdo
3L	14219632	3L_14219632_DEL [dm3] 3L_14226532_DEL [dm6]	CTA	G	1.320e^-4	0.291	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	16038886	X_16038886_INS [dm3] X_16144853_INS [dm6]	A	AA	1.321e^-4	0.291	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3R	15290664	3R_15290664_SNP [dm3] 3R_19464942_SNP [dm6]	T	C	1.325e^-4	0.292	INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	20402845	X_20402845_DEL [dm3] X_20531818_DEL [dm6]	CTGTTCGCATGAACCTTTTC...	C	1.328e^-4	0.292	INTERGENIC
3L	16294324	3L_16294324_SNP [dm3] 3L_16301224_SNP [dm6]	C	T	1.328e^-4	0.292	UPSTREAM CG4982 INTERGENIC
3R	23299932	3R_23299932_INS [dm3] 3R_27474210_INS [dm6]	A	ATA	1.330e^-4	0.292	INTERGENIC
X	16726433	X_16726433_INS [dm3] X_16832400_INS [dm6]	C	CAC	1.334e^-4	0.292	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
2L	21319865	2L_21319865_DEL [dm3] 2L_21319865_DEL [dm6]	TATCACCAATT...	T	1.334e^-4	0.292	DOWNSTREAM crc EXON CR44785
X	16426766	X_16426766_DEL [dm3] X_16532733_DEL [dm6]	ACATATATATATA...	A	1.335e^-4	0.292	INTRON para
X	14697368	X_14697368_SNP [dm3] X_14803335_SNP [dm6]	A	C	1.337e^-4	0.292	INTRON rut
X	19011897	X_19011897_INS [dm3] X_19117864_INS [dm6]	G	GG	1.339e^-4	0.292	INTERGENIC
3R	15883375	3R_15883375_SNP [dm3] 3R_20057653_SNP [dm6]	T	C	1.342e^-4	0.292	UPSTREAM mdlc & 1 other INTRON CG4390	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	16232350	3R_16232350_SNP [dm3] 3R_20406628_SNP [dm6]	A	C	1.343e^-4	0.292	UTR_3_PRIME CG4335 INTRON Gfrl	TF binding site mE1_TFBS_inv
2R	10044253	2R_10044253_SNP [dm3] 2R_14156748_SNP [dm6]	G	T	1.345e^-4	0.292	SYNONYMOUS_CODING pea DOWNSTREAM CG13018	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	8561266	2L_8561266_DEL [dm3] 2L_8561266_DEL [dm6]	TT	T	1.351e^-4	0.292	INTRON Sema-1a
2R	4402902	2R_4402902_SNP [dm3] 2R_8515397_SNP [dm6]	T	C	1.351e^-4	0.292	INTRON mtt
3L	8946704	3L_8946704_SNP [dm3] 3L_8953604_SNP [dm6]	A	T	1.353e^-4	0.292	UPSTREAM orb2 & 1 other INTRON orb2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk mE1_TFBS_Ubx
X	7293956	X_7293956_DEL [dm3] X_7399923_DEL [dm6]	TTTT	G	1.357e^-4	0.292	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sbb
3L	5965248	3L_5965248_SNP [dm3] 3L_5972148_SNP [dm6]	A	T	1.358e^-4	0.292	INTRON CG10479	TF binding site BDTNP1_TFBS_twi
3L	6520186	3L_6520186_SNP [dm3] 3L_6527086_SNP [dm6]	T	C	1.360e^-4	0.292	INTRON sfl
3L	17125080	3L_17125080_INS [dm3] 3L_17131980_INS [dm6]	A	ATT	1.361e^-4	0.292	INTRON Rbp6
X	5694808	X_5694808_DEL [dm3] X_5800775_DEL [dm6]	AA	A	1.365e^-4	0.292	INTERGENIC
3L	1824462	3L_1824462_SNP [dm3] 3L_1824462_SNP [dm6]	G	T	1.367e^-4	0.292	SYNONYMOUS_CODING Cpr62Ba
2R	12811637	2R_12811637_SNP [dm3] 2R_16924132_SNP [dm6]	T	A	1.373e^-4	0.292	UPSTREAM Pkc53E INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19970687	3R_19970687_SNP [dm3] 3R_24144965_SNP [dm6]	A	G	1.373e^-4	0.292	INTRON Kal1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18213428	3L_18213428_SNP [dm3] 3L_18220328_SNP [dm6]	A	C	1.373e^-4	0.292	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2R	10063670	2R_10063670_SNP [dm3] 2R_14176165_SNP [dm6]	T	A	1.374e^-4	0.292	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	21355263	2L_21355263_DEL [dm3] 2L_21355263_DEL [dm6]	ACCTAA	A	1.375e^-4	0.292	INTRON Tsp39D
X	11368726	X_11368726_SNP [dm3] X_11474693_SNP [dm6]	G	A	1.376e^-4	0.292	INTRON CG43155
3L	13962395	3L_13962395_SNP [dm3] 3L_13969295_SNP [dm6]	T	C	1.377e^-4	0.292	NON_SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3R	13807712	3R_13807712_INS [dm3] 3R_17981990_INS [dm6]	C	CC	1.378e^-4	0.292	INTRON cpo
3R	7007117	3R_7007117_SNP [dm3] 3R_11181395_SNP [dm6]	T	A	1.379e^-4	0.292	INTERGENIC
3R	16303513	3R_16303513_SNP [dm3] 3R_20477791_SNP [dm6]	T	C	1.379e^-4	0.292	INTRON Gfrl
3R	18125524	3R_18125524_DEL [dm3] 3R_22299802_DEL [dm6]	AA	T	1.379e^-4	0.292	UTR_5_PRIME CG7084
3L	5522368	3L_5522368_SNP [dm3] 3L_5529268_SNP [dm6]	G	A	1.379e^-4	0.292	UTR_5_PRIME Lkr
3R	8777926	3R_8777926_DEL [dm3] 3R_12952204_DEL [dm6]	GCAG	G	1.382e^-4	0.292	INTRON grsm
3R	15324769	3R_15324769_SNP [dm3] 3R_19499047_SNP [dm6]	C	A	1.387e^-4	0.292	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	19465064	3R_19465064_SNP [dm3] 3R_23639342_SNP [dm6]	A	G	1.388e^-4	0.292	INTRON CG31145	TF binding site mE1_TFBS_inv
2L	3678953	2L_3678953_SNP [dm3] 2L_3678953_SNP [dm6]	T	C	1.389e^-4	0.292	INTRON CG34340
3L	975774	3L_975774_SNP [dm3] 3L_975774_SNP [dm6]	T	A	1.389e^-4	0.292	INTRON Glut1
3L	975779	3L_975779_SNP [dm3] 3L_975779_SNP [dm6]	T	C	1.389e^-4	0.292	INTRON Glut1
3R	15885470	3R_15885470_SNP [dm3] 3R_20059748_SNP [dm6]	T	C	1.390e^-4	0.292	UTR_5_PRIME CG4390 DOWNSTREAM mdlc
2R	9266899	2R_9266899_DEL [dm3] 2R_13379394_DEL [dm6]	TCGCCGCGCAGCTCCATT...	T	1.390e^-4	0.292	INTERGENIC
3R	25487309	3R_25487309_DEL [dm3] 3R_29661587_DEL [dm6]	ATCTATTTGCTA...	A	1.395e^-4	0.292	INTERGENIC
2L	2802004	2L_2802004_SNP [dm3] 2L_2802004_SNP [dm6]	T	C	1.395e^-4	0.292	INTERGENIC
3R	17542150	3R_17542150_INS [dm3] 3R_21716428_INS [dm6]	C	CATAC	1.396e^-4	0.292	INTRON CG31176
3L	978936	3L_978936_SNP [dm3] 3L_978936_SNP [dm6]	C	T	1.398e^-4	0.292	INTRON Glut1
2L	7509570	2L_7509570_INS [dm3] 2L_7509570_INS [dm6]	T	TT	1.398e^-4	0.292	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19145063	2R_19145063_SNP [dm3] 2R_23257540_SNP [dm6]	A	T	1.399e^-4	0.292	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20758370	X_20758370_INS [dm3] X_20887343_INS [dm6]	A	AA	1.399e^-4	0.292	INTRON shakB
3R	14973223	3R_14973223_SNP [dm3] 3R_19147501_SNP [dm6]	T	A	1.404e^-4	0.293	UTR_5_PRIME Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7592078	2L_7592078_SNP [dm3] 2L_7592078_SNP [dm6]	C	T	1.409e^-4	0.293	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16965651	2L_16965651_SNP [dm3] 2L_16965651_SNP [dm6]	A	G	1.410e^-4	0.293	EXON CR45285
2L	5561911	2L_5561911_DEL [dm3] 2L_5561911_DEL [dm6]	ATACTTTAAGA...	A	1.412e^-4	0.293	INTRON GluRIIB
3L	11087458	3L_11087458_SNP [dm3] 3L_11094358_SNP [dm6]	T	C	1.414e^-4	0.293	SPLICE_SITE_REGION CG6279 UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3L	18859273	3L_18859273_SNP [dm3] 3L_18866173_SNP [dm6]	C	A	1.417e^-4	0.293	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11418831	3L_11418831_DEL [dm3] 3L_11425731_DEL [dm6]	AA	T	1.417e^-4	0.293	INTRON CG7560	TF binding site mE1_TFBS_cad
2L	4706204	2L_4706204_DEL [dm3] 2L_4706204_DEL [dm6]	CG	C	1.424e^-4	0.294	INTRON CG34351
X	10225532	X_10225532_INS [dm3] X_10331499_INS [dm6]	A	AA	1.425e^-4	0.294	INTRON CG15306
2R	15912765	2R_15912765_SNP [dm3] 2R_20025260_SNP [dm6]	A	G	1.425e^-4	0.294	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5942077	2L_5942077_DEL [dm3] 2L_5942077_DEL [dm6]	CCACACTCACCCACCAAAAC...	C	1.429e^-4	0.294	UPSTREAM CR45289 DOWNSTREAM Sfp26Ad EXON CR45289
X	3221685	X_3221685_INS [dm3] X_3327652_INS [dm6]	C	CC	1.430e^-4	0.294	INTRON CR44886 & 1 other
3L	10412319	3L_10412319_SNP [dm3] 3L_10419219_SNP [dm6]	T	C	1.430e^-4	0.294	INTERGENIC
X	15655707	X_15655707_SNP [dm3] X_15761674_SNP [dm6]	C	T	1.430e^-4	0.294	NON_SYNONYMOUS_CODING mRpL3 UPSTREAM Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13754844	2L_13754844_SNP [dm3] 2L_13754844_SNP [dm6]	T	A	1.431e^-4	0.294	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
3L	592996	3L_592996_DEL [dm3] 3L_592996_DEL [dm6]	ATAAT	G	1.445e^-4	0.296	UPSTREAM MED14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10499046	2R_10499046_DEL [dm3] 2R_14611541_DEL [dm6]	AA	A	1.445e^-4	0.296	INTRON Su_var_2-HP2
4	704139	4_704139_INS [dm3] 4_683513_INS [dm6]	T	TT	1.448e^-4	0.296	INTRON CG11360	transposable element FlyBase
X	20561845	X_20561845_INS [dm3] X_20690818_INS [dm6]	C	CC	1.448e^-4	0.296	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	8058522	2L_8058522_SNP [dm3] 2L_8058522_SNP [dm6]	A	G	1.449e^-4	0.296	SYNONYMOUS_CODING poe
2R	7139384	2R_7139384_SNP [dm3] 2R_11251879_SNP [dm6]	T	G	1.456e^-4	0.296	UTR_3_PRIME Or47a & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12835297	3L_12835297_SNP [dm3] 3L_12842197_SNP [dm6]	A	C	1.457e^-4	0.296	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2R	10038925	2R_10038925_SNP [dm3] 2R_14151420_SNP [dm6]	C	T	1.457e^-4	0.296	SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	771575	3R_771575_DEL [dm3] 3R_4945853_DEL [dm6]	CTT	C	1.457e^-4	0.296	UPSTREAM CR45188 DOWNSTREAM Cdep INTERGENIC
X	18329330	X_18329330_INS [dm3] X_18435297_INS [dm6]	G	GAGCCGGG	1.458e^-4	0.296	DOWNSTREAM CG32548 INTERGENIC
3R	17299942	3R_17299942_INS [dm3] 3R_21474220_INS [dm6]	T	TTTAA	1.458e^-4	0.296	INTERGENIC
3R	15877371	3R_15877371_SNP [dm3] 3R_20051649_SNP [dm6]	T	A	1.460e^-4	0.296	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15882599	3R_15882599_SNP [dm3] 3R_20056877_SNP [dm6]	C	A	1.462e^-4	0.296	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18144856	3L_18144856_DEL [dm3] 3L_18151756_DEL [dm6]	AGG	A	1.467e^-4	0.297	INTRON CG7330
2R	16646417	2R_16646417_DEL [dm3] 2R_20758912_DEL [dm6]	CA	C	1.469e^-4	0.297	INTERGENIC
3L	21152752	3L_21152752_SNP [dm3] 3L_21159652_SNP [dm6]	A	T	1.471e^-4	0.297	INTRON Ac78C
3R	25477948	3R_25477948_SNP [dm3] 3R_29652226_SNP [dm6]	C	T	1.485e^-4	0.299	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15877321	3R_15877321_SNP [dm3] 3R_20051599_SNP [dm6]	G	A	1.486e^-4	0.299	INTRON CG17193
3L	8812504	3L_8812504_INS [dm3] 3L_8819404_INS [dm6]	C	TTGGTTGG	1.491e^-4	0.3	INTERGENIC
2R	7277184	2R_7277184_INS [dm3] 2R_11389679_INS [dm6]	A	AA	1.495e^-4	0.3	UPSTREAM CG30022 INTRON sprt
3L	3159915	3L_3159915_SNP [dm3] 3L_3159915_SNP [dm6]	T	C	1.497e^-4	0.3	UPSTREAM pfk & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	10121991	3R_10121991_SNP [dm3] 3R_14296269_SNP [dm6]	G	T	1.497e^-4	0.3	INTRON CG12207
3L	11087469	3L_11087469_SNP [dm3] 3L_11094369_SNP [dm6]	C	T	1.498e^-4	0.3	UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3R	26547937	3R_26547937_DEL [dm3] 3R_30722215_DEL [dm6]	AGGAAAATGAAAA...	A	1.501e^-4	0.3	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7545876	3L_7545876_SNP [dm3] 3L_7552776_SNP [dm6]	G	A	1.501e^-4	0.3	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17989083	3R_17989083_SNP [dm3] 3R_22163361_SNP [dm6]	T	C	1.502e^-4	0.3	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	3627760	2L_3627760_DEL [dm3] 2L_3627760_DEL [dm6]	TT	T	1.515e^-4	0.302	INTRON for
3R	10483895	3R_10483895_SNP [dm3] 3R_14658173_SNP [dm6]	A	T	1.518e^-4	0.302	INTRON CG3505
3L	5163204	3L_5163204_SNP [dm3] 3L_5170104_SNP [dm6]	C	T	1.526e^-4	0.304	INTRON shep
2L	111618	2L_111618_DEL [dm3] 2L_111618_DEL [dm6]	AGACTTTGGTA...	A	1.532e^-4	0.304	DOWNSTREAM Sam-S INTRON Sam-S
3L	21122228	3L_21122228_SNP [dm3] 3L_21129128_SNP [dm6]	C	T	1.535e^-4	0.304	INTRON ko
3R	16134898	3R_16134898_SNP [dm3] 3R_20309176_SNP [dm6]	C	G	1.535e^-4	0.304	UPSTREAM CG42668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22741710	3R_22741710_SNP [dm3] 3R_26915988_SNP [dm6]	C	T	1.541e^-4	0.304	INTRON sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	11879715	3R_11879715_DEL [dm3] 3R_16053993_DEL [dm6]	AGGA	A	1.541e^-4	0.304	CODON_DELETION msps	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	8128898	2L_8128898_INS [dm3] 2L_8128898_INS [dm6]	T	TA	1.541e^-4	0.304	INTRON CG8668	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	16029257	3L_16029257_SNP [dm3] 3L_16036157_SNP [dm6]	A	G	1.542e^-4	0.304	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
3L	2182532	3L_2182532_DEL [dm3] 3L_2182532_DEL [dm6]	AAA	A	1.543e^-4	0.304	INTERGENIC
2R	18460017	2R_18460017_INS [dm3] 2R_22572512_INS [dm6]	C	CC	1.548e^-4	0.305	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15317685	2R_15317685_SNP [dm3] 2R_19430180_SNP [dm6]	A	C	1.551e^-4	0.305	DOWNSTREAM Fak INTRON CalpA
3R	15759769	3R_15759769_SNP [dm3] 3R_19934047_SNP [dm6]	T	C	1.552e^-4	0.305	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7175361	3L_7175361_SNP [dm3] 3L_7182261_SNP [dm6]	G	C	1.553e^-4	0.305	INTRON Dscam2
2R	14609902	2R_14609902_SNP [dm3] 2R_18722397_SNP [dm6]	A	G	1.555e^-4	0.305	INTRON Hs3st-A
3R	16241658	3R_16241658_INS [dm3] 3R_20415936_INS [dm6]	T	TGT	1.555e^-4	0.305	INTRON Gfrl
2L	14967115	2L_14967115_INS [dm3] 2L_14967115_INS [dm6]	A	AAATCAAACAGA...	1.557e^-4	0.305	INTRON CG42313
3R	13302076	3R_13302076_SNP [dm3] 3R_17476354_SNP [dm6]	C	A	1.557e^-4	0.305	INTRON Dscam3
X	15501891	X_15501891_SNP [dm3] X_15607858_SNP [dm6]	C	T	1.561e^-4	0.305	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26658101	3R_26658101_DEL [dm3] 3R_30832379_DEL [dm6]	AAA	T	1.563e^-4	0.305	INTRON CG15544
X	6303961	X_6303961_DEL [dm3] X_6409928_DEL [dm6]	ATAACTAATATAATATAATA...	A	1.566e^-4	0.305	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26080147	3R_26080147_SNP [dm3] 3R_30254425_SNP [dm6]	T	G	1.568e^-4	0.305	DOWNSTREAM CG18404 INTERGENIC
3L	258414	3L_258414_DEL [dm3] 3L_258414_DEL [dm6]	AA	A	1.568e^-4	0.305	UTR_5_PRIME wac UPSTREAM DIP2 DOWNSTREAM Tudor-SN INTRON wac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	6520117	3L_6520117_SNP [dm3] 3L_6527017_SNP [dm6]	G	T	1.570e^-4	0.305	INTRON sfl
2L	12043031	2L_12043031_DEL [dm3] 2L_12043031_DEL [dm6]	GG	G	1.571e^-4	0.305	UTR_5_PRIME CG6785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4786880	X_4786880_INS [dm3] X_4892847_INS [dm6]	A	AA	1.572e^-4	0.305	INTRON CG42594
2L	12210129	2L_12210129_SNP [dm3] 2L_12210129_SNP [dm6]	T	G	1.575e^-4	0.305	DOWNSTREAM CG31759 INTRON aret
2R	4867140	2R_4867140_SNP [dm3] 2R_8979635_SNP [dm6]	T	C	1.577e^-4	0.305	INTRON CG8213
X	3662110	X_3662110_DEL [dm3] X_3768077_DEL [dm6]	CACAATGG	C	1.577e^-4	0.305	INTRON tlk
3R	10483914	3R_10483914_SNP [dm3] 3R_14658192_SNP [dm6]	C	A	1.583e^-4	0.306	INTRON CG3505
X	16071928	X_16071928_DEL [dm3] X_16177895_DEL [dm6]	AA	A	1.586e^-4	0.306	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med
3L	10109219	3L_10109219_DEL [dm3] 3L_10116119_DEL [dm6]	TT	T	1.591e^-4	0.306	INTRON dpr6
2L	10930395	2L_10930395_SNP [dm3] 2L_10930395_SNP [dm6]	G	A	1.594e^-4	0.306	INTRON dpr2
2L	20236651	2L_20236651_SNP [dm3] 2L_20236651_SNP [dm6]	T	A	1.596e^-4	0.306	INTERGENIC	TF binding site mE1_TFBS_HSA
X	12941175	X_12941175_DEL [dm3] X_13047142_DEL [dm6]	AAATAATATGGTGATAAAA...	A	1.597e^-4	0.306	INTRON rad
X	6566283	X_6566283_DEL [dm3] X_6672250_DEL [dm6]	GT	G	1.601e^-4	0.306	INTRON CG3198	TF binding site mE1_TFBS_inv
2L	6986001	2L_6986001_DEL [dm3] 2L_6986001_DEL [dm6]	TGTAT	T	1.602e^-4	0.306	INTRON uif EXON CR44326
3L	7818398	3L_7818398_SNP [dm3] 3L_7825298_SNP [dm6]	T	G	1.606e^-4	0.306	INTRON Pdp1
3R	15723610	3R_15723610_SNP [dm3] 3R_19897888_SNP [dm6]	G	A	1.607e^-4	0.306	SYNONYMOUS_CODING CG4733 DOWNSTREAM CG4538 INTRON CG4538
2R	10552736	2R_10552736_SNP [dm3] 2R_14665231_SNP [dm6]	T	C	1.610e^-4	0.306	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
X	1183727	X_1183727_INS [dm3] X_1289694_INS [dm6]	A	AA	1.610e^-4	0.306	DOWNSTREAM DAAM & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9312366	2R_9312366_DEL [dm3] 2R_13424861_DEL [dm6]	CA	G	1.614e^-4	0.306	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19586137	3R_19586137_SNP [dm3] 3R_23760415_SNP [dm6]	C	G	1.615e^-4	0.306	DOWNSTREAM Plip & 1 other INTRON CG10219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9040934	2L_9040934_DEL [dm3] 2L_9040934_DEL [dm6]	GAGTAAAA	G	1.618e^-4	0.306	INTERGENIC
X	17319697	X_17319697_DEL [dm3] X_17425664_DEL [dm6]	TT	T	1.621e^-4	0.306	UPSTREAM CG5613 INTRON CG12994 & 1 other
3L	8392315	3L_8392315_SNP [dm3] 3L_8399215_SNP [dm6]	A	G	1.622e^-4	0.306	INTRON CG7120
2R	7766298	2R_7766298_SNP [dm3] 2R_11878793_SNP [dm6]	T	G	1.622e^-4	0.306	NON_SYNONYMOUS_CODING CG13185
X	17439088	X_17439088_DEL [dm3] X_17545055_DEL [dm6]	TAAATAAAAATAGCGAGGCA...	T	1.624e^-4	0.306	INTRON CG43658
3R	11580084	3R_11580084_DEL [dm3] 3R_15754362_DEL [dm6]	AAAGGGAG	A	1.625e^-4	0.306	INTERGENIC
2L	7798089	2L_7798089_SNP [dm3] 2L_7798089_SNP [dm6]	G	C	1.625e^-4	0.306	INTRON Herp
2L	12279048	2L_12279048_SNP [dm3] 2L_12279048_SNP [dm6]	G	A	1.627e^-4	0.306	INTRON aret
3L	6358668	3L_6358668_SNP [dm3] 3L_6365568_SNP [dm6]	C	T	1.628e^-4	0.306	INTERGENIC
3L	2975405	3L_2975405_SNP [dm3] 3L_2975405_SNP [dm6]	T	C	1.628e^-4	0.306	DOWNSTREAM CR44530 INTERGENIC
3L	7079204	3L_7079204_INS [dm3] 3L_7086104_INS [dm6]	A	TCC	1.629e^-4	0.306	UTR_3_PRIME Cpr65Ea
3R	15879766	3R_15879766_SNP [dm3] 3R_20054044_SNP [dm6]	G	C	1.632e^-4	0.306	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17920659	2R_17920659_SNP [dm3] 2R_22033154_SNP [dm6]	C	G	1.633e^-4	0.306	INTRON CG34370
X	10087262	X_10087262_INS [dm3] X_10193229_INS [dm6]	C	CG	1.637e^-4	0.306	UTR_3_PRIME CG43902 INTRON CR44894
3R	15878120	3R_15878120_SNP [dm3] 3R_20052398_SNP [dm6]	C	T	1.637e^-4	0.306	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	15211893	2L_15211893_SNP [dm3] 2L_15211893_SNP [dm6]	G	T	1.638e^-4	0.306	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

pc_SegregVariants_X phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results