DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.495e^-18)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	4.7989	0.0908

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4486 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6293706	3L_6293706_INS [dm3] 3L_6300606_INS [dm6]	T	TAG	5.859e^-9	0.011	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27235324	3R_27235324_DEL [dm3] 3R_31409602_DEL [dm6]	TAAACGTATTT...	T	1.968e^-8	0.018	INTRON Gprk2
X	11479413	X_11479413_SNP [dm3] X_11585380_SNP [dm6]	C	G	3.490e^-8	0.02	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6678460	3R_6678460_DEL [dm3] 3R_10852738_DEL [dm6]	AA	G	4.267e^-8	0.02	UTR_5_PRIME CG4565 DOWNSTREAM CG42394 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	19496052	X_19496052_INS [dm3] X_19602019_INS [dm6]	T	TTT	8.456e^-8	0.032	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	1216328	2R_1216328_INS [dm3] 2R_5328823_INS [dm6]	G	GTTGTGCAGTAGG...	1.054e^-7	0.033	INTRON sxc
3R	15892162	3R_15892162_SNP [dm3] 3R_20066440_SNP [dm6]	A	G	1.846e^-7	0.039	INTERGENIC
X	7599741	X_7599741_DEL [dm3] X_7705708_DEL [dm6]	AAA	A	2.113e^-7	0.039	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17481255	X_17481255_DEL [dm3] X_17587222_DEL [dm6]	TACAT	T	2.174e^-7	0.039	INTRON CG12991
3L	473509	3L_473509_INS [dm3] 3L_473509_INS [dm6]	C	CTTTTC	2.288e^-7	0.039	INTRON klar
3L	6293700	3L_6293700_SNP [dm3] 3L_6300600_SNP [dm6]	T	A	2.298e^-7	0.039	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18213458	3L_18213458_SNP [dm3] 3L_18220358_SNP [dm6]	G	T	2.478e^-7	0.039	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3R	15892036	3R_15892036_SNP [dm3] 3R_20066314_SNP [dm6]	A	G	2.844e^-7	0.041	INTERGENIC
X	17635879	X_17635879_DEL [dm3] X_17741846_DEL [dm6]	CC	C	4.091e^-7	0.047	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18213468	3L_18213468_SNP [dm3] 3L_18220368_SNP [dm6]	A	G	4.254e^-7	0.047	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213472	3L_18213472_SNP [dm3] 3L_18220372_SNP [dm6]	T	A	4.254e^-7	0.047	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213459	3L_18213459_DEL [dm3] 3L_18220359_DEL [dm6]	GAACCA	G	4.321e^-7	0.047	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18329829	3L_18329829_INS [dm3] 3L_18336729_INS [dm6]	T	TT	4.722e^-7	0.047	INTERGENIC
X	11479401	X_11479401_SNP [dm3] X_11585368_SNP [dm6]	G	A	5.273e^-7	0.047	NON_SYNONYMOUS_CODING nod UPSTREAM CR43217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15882905	3R_15882905_SNP [dm3] 3R_20057183_SNP [dm6]	G	T	5.275e^-7	0.047	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7600034	X_7600034_DEL [dm3] X_7706001_DEL [dm6]	TT	T	5.276e^-7	0.047	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6293702	3L_6293702_SNP [dm3] 3L_6300602_SNP [dm6]	T	G	5.648e^-7	0.047	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18730258	3L_18730258_SNP [dm3] 3L_18737158_SNP [dm6]	G	A	6.055e^-7	0.047	INTERGENIC
X	21364686	X_21364686_INS [dm3] X_21493659_INS [dm6]	A	ACATA	6.094e^-7	0.047	INTERGENIC
3L	12056313	3L_12056313_DEL [dm3] 3L_12063213_DEL [dm6]	CC	C	6.214e^-7	0.047	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3268579	2R_3268579_DEL [dm3] 2R_7381074_DEL [dm6]	CC	C	7.528e^-7	0.052	INTRON Dscam1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12367468	2R_12367468_INS [dm3] 2R_16479963_INS [dm6]	C	CA	7.793e^-7	0.052	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21946825	X_21946825_INS [dm3] X_22544989_INS [dm6]	G	GG	8.043e^-7	0.052	UPSTREAM CG17599 INTERGENIC
2R	1141073	2R_1141073_INS [dm3] 2R_5253568_INS [dm6]	G	GG	8.116e^-7	0.052	UPSTREAM CR41443 INTERGENIC
2L	21070330	2L_21070330_SNP [dm3] 2L_21070330_SNP [dm6]	A	G	8.904e^-7	0.053	UPSTREAM CG9265 INTRON CG9265
2L	10072028	2L_10072028_SNP [dm3] 2L_10072028_SNP [dm6]	G	C	9.030e^-7	0.053	INTRON CG44153
X	12939490	X_12939490_DEL [dm3] X_13045457_DEL [dm6]	TG	T	9.286e^-7	0.053	INTRON rad
X	7682833	X_7682833_SNP [dm3] X_7788800_SNP [dm6]	A	T	9.338e^-7	0.053	INTERGENIC
X	16519235	X_16519235_DEL [dm3] X_16625202_DEL [dm6]	AA	A	1.012e^-6	0.054	UTR_3_PRIME Rok INTRON Rok
X	7682834	X_7682834_SNP [dm3] X_7788801_SNP [dm6]	T	G	1.029e^-6	0.054	INTERGENIC
3R	15882866	3R_15882866_SNP [dm3] 3R_20057144_SNP [dm6]	G	A	1.037e^-6	0.054	SYNONYMOUS_CODING CG4390 UPSTREAM mdlc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15892179	3R_15892179_SNP [dm3] 3R_20066457_SNP [dm6]	A	T	1.112e^-6	0.055	INTERGENIC
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	1.117e^-6	0.055	SYNONYMOUS_CODING CG14857
2R	19616121	2R_19616121_DEL [dm3] 2R_23728598_DEL [dm6]	GG	A	1.167e^-6	0.055	INTRON Sesn
3R	15892155	3R_15892155_SNP [dm3] 3R_20066433_SNP [dm6]	G	A	1.211e^-6	0.055	INTERGENIC
3R	15877380	3R_15877380_SNP [dm3] 3R_20051658_SNP [dm6]	T	A	1.243e^-6	0.055	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	25605188	3R_25605188_SNP [dm3] 3R_29779466_SNP [dm6]	C	T	1.259e^-6	0.055	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15892115	3R_15892115_SNP [dm3] 3R_20066393_SNP [dm6]	T	A	1.314e^-6	0.055	INTERGENIC
3R	15892266	3R_15892266_SNP [dm3] 3R_20066544_SNP [dm6]	G	A	1.318e^-6	0.055	INTERGENIC
3L	18213474	3L_18213474_SNP [dm3] 3L_18220374_SNP [dm6]	C	G	1.341e^-6	0.055	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2L	14078423	2L_14078423_SNP [dm3] 2L_14078423_SNP [dm6]	C	A	1.358e^-6	0.055	INTRON nAChRalpha5
2R	18524741	2R_18524741_INS [dm3] 2R_22637236_INS [dm6]	T	TAT	1.390e^-6	0.055	UPSTREAM bonsai INTRON Cdk9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8397999	X_8397999_DEL [dm3] X_8503966_DEL [dm6]	TT	T	1.406e^-6	0.055	INTRON CG33181
3R	15892071	3R_15892071_INS [dm3] 3R_20066349_INS [dm6]	A	AA	1.483e^-6	0.056	INTERGENIC
3R	26174550	3R_26174550_SNP [dm3] 3R_30348828_SNP [dm6]	A	T	1.484e^-6	0.056	INTRON hdc
3L	18213445	3L_18213445_MNP [dm3] 3L_18220345_MNP [dm6]	CAT	TGG	1.592e^-6	0.058	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3R	10140762	3R_10140762_SNP [dm3] 3R_14315040_SNP [dm6]	T	C	1.606e^-6	0.058	SYNONYMOUS_CODING Crz UPSTREAM pr-set7 DOWNSTREAM CG31321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15892122	3R_15892122_SNP [dm3] 3R_20066400_SNP [dm6]	T	A	1.680e^-6	0.059	INTERGENIC
3L	6293695	3L_6293695_INS [dm3] 3L_6300595_INS [dm6]	A	AAAAAAAAC	1.752e^-6	0.06	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13365303	X_13365303_INS [dm3] X_13471270_INS [dm6]	T	TATGGTGTT	1.756e^-6	0.06	INTRON Neto
3R	15892176	3R_15892176_SNP [dm3] 3R_20066454_SNP [dm6]	T	C	1.785e^-6	0.06	INTERGENIC
3R	15892161	3R_15892161_SNP [dm3] 3R_20066439_SNP [dm6]	A	G	1.849e^-6	0.061	INTERGENIC
X	11368748	X_11368748_SNP [dm3] X_11474715_SNP [dm6]	T	A	2.011e^-6	0.062	INTRON CG43155
2L	9320520	2L_9320520_INS [dm3] 2L_9320520_INS [dm6]	C	CTTGAA	2.012e^-6	0.062	INTERGENIC
2R	15912687	2R_15912687_SNP [dm3] 2R_20025182_SNP [dm6]	G	A	2.026e^-6	0.062	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20966354	X_20966354_DEL [dm3] X_21095327_DEL [dm6]	ACA	A	2.082e^-6	0.062	DOWNSTREAM CG15446 INTRON stg1 & 1 other
X	19600727	X_19600727_INS [dm3] X_19706694_INS [dm6]	T	TGT	2.084e^-6	0.062	UTR_3_PRIME meso18E DOWNSTREAM CG14230	TF binding site mE1_TFBS_HSA
3L	21136719	3L_21136719_SNP [dm3] 3L_21143619_SNP [dm6]	T	C	2.163e^-6	0.062	INTRON Ac78C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4336566	2L_4336566_DEL [dm3] 2L_4336566_DEL [dm6]	AAA	A	2.188e^-6	0.062	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12107229	3L_12107229_SNP [dm3] 3L_12114129_SNP [dm6]	A	T	2.204e^-6	0.062	INTERGENIC
3R	15891906	3R_15891906_SNP [dm3] 3R_20066184_SNP [dm6]	G	T	2.207e^-6	0.062	INTERGENIC
3R	15891978	3R_15891978_SNP [dm3] 3R_20066256_SNP [dm6]	A	T	2.227e^-6	0.062	INTERGENIC
X	4488608	X_4488608_DEL [dm3] X_4594575_DEL [dm6]	GCTTGGCATCG...	G	2.284e^-6	0.063	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3R	15891270	3R_15891270_SNP [dm3] 3R_20065548_SNP [dm6]	C	T	2.428e^-6	0.065	INTERGENIC
2R	18133151	2R_18133151_SNP [dm3] 2R_22245646_SNP [dm6]	G	C	2.431e^-6	0.065	INTRON dve
3R	15891982	3R_15891982_SNP [dm3] 3R_20066260_SNP [dm6]	G	C	2.630e^-6	0.069	INTERGENIC
2L	12301408	2L_12301408_SNP [dm3] 2L_12301408_SNP [dm6]	G	A	2.936e^-6	0.076	INTRON aret
3R	12185008	3R_12185008_DEL [dm3] 3R_16359286_DEL [dm6]	TT	T	2.975e^-6	0.076	UTR_5_PRIME CG17931 INTRON CG42446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14974159	3R_14974159_SNP [dm3] 3R_19148437_SNP [dm6]	G	A	3.018e^-6	0.076	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	22520225	3R_22520225_INS [dm3] 3R_26694503_INS [dm6]	G	GTTGG	3.127e^-6	0.078	UPSTREAM TwdlQ INTERGENIC
3L	6317088	3L_6317088_SNP [dm3] 3L_6323988_SNP [dm6]	T	C	3.209e^-6	0.079	INTERGENIC
3R	15892601	3R_15892601_SNP [dm3] 3R_20066879_SNP [dm6]	G	A	3.435e^-6	0.084	INTERGENIC
3R	848071	3R_848071_INS [dm3] 3R_5022349_INS [dm6]	T	TTT	3.764e^-6	0.09	DOWNSTREAM CR45585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15891876	3R_15891876_SNP [dm3] 3R_20066154_SNP [dm6]	T	A	3.822e^-6	0.09	INTERGENIC
3R	15892378	3R_15892378_SNP [dm3] 3R_20066656_SNP [dm6]	T	A	3.962e^-6	0.09	INTERGENIC
3L	18840695	3L_18840695_INS [dm3] 3L_18847595_INS [dm6]	T	TCTTA	3.973e^-6	0.09	INTERGENIC
3R	15892009	3R_15892009_SNP [dm3] 3R_20066287_SNP [dm6]	C	T	4.030e^-6	0.09	INTERGENIC
3L	18730262	3L_18730262_SNP [dm3] 3L_18737162_SNP [dm6]	C	T	4.040e^-6	0.09	INTERGENIC
3L	18730260	3L_18730260_SNP [dm3] 3L_18737160_SNP [dm6]	G	A	4.071e^-6	0.09	INTERGENIC
2R	18133354	2R_18133354_SNP [dm3] 2R_22245849_SNP [dm6]	G	C	4.176e^-6	0.09	INTRON dve
3L	6293755	3L_6293755_SNP [dm3] 3L_6300655_SNP [dm6]	G	A	4.176e^-6	0.09	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13692169	X_13692169_INS [dm3] X_13798136_INS [dm6]	A	AA	4.239e^-6	0.09	UPSTREAM CG10996 INTRON inaE
3R	20051147	3R_20051147_DEL [dm3] 3R_24225425_DEL [dm6]	GCTG	G	4.245e^-6	0.09	CODON_DELETION Spps	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16895812	X_16895812_INS [dm3] X_17001779_INS [dm6]	T	TTTACCCTT	4.477e^-6	0.093	INTRON CG45002
3L	6293688	3L_6293688_SNP [dm3] 3L_6300588_SNP [dm6]	A	T	4.496e^-6	0.093	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11769496	2R_11769496_DEL [dm3] 2R_15881991_DEL [dm6]	TATTC	T	4.507e^-6	0.093	INTRON sli
3R	15892073	3R_15892073_SNP [dm3] 3R_20066351_SNP [dm6]	C	G	4.771e^-6	0.097	INTERGENIC
2R	18122805	2R_18122805_SNP [dm3] 2R_22235300_SNP [dm6]	G	T	4.830e^-6	0.097	DOWNSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12107227	3L_12107227_SNP [dm3] 3L_12114127_SNP [dm6]	G	A	4.902e^-6	0.097	INTERGENIC
X	17636382	X_17636382_INS [dm3] X_17742349_INS [dm6]	C	CCTTGATTCTGC...	4.936e^-6	0.097	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3L	14675527	3L_14675527_DEL [dm3] 3L_14682427_DEL [dm6]	ATTTTTCA	A	4.965e^-6	0.097	INTRON ome
3R	15711541	3R_15711541_SNP [dm3] 3R_19885819_SNP [dm6]	G	A	5.240e^-6	0.101	UTR_3_PRIME Pk92B DOWNSTREAM ninaE
3R	15886276	3R_15886276_SNP [dm3] 3R_20060554_SNP [dm6]	A	G	5.791e^-6	0.11	UPSTREAM CG4390 INTERGENIC
2R	5201035	2R_5201035_INS [dm3] 2R_9313530_INS [dm6]	C	CC	5.794e^-6	0.11	UPSTREAM mir-987 INTRON CG13739 & 1 other
3R	15890913	3R_15890913_SNP [dm3] 3R_20065191_SNP [dm6]	T	C	5.868e^-6	0.11	INTERGENIC
3R	12745509	3R_12745509_DEL [dm3] 3R_16919787_DEL [dm6]	CTGGT	C	6.029e^-6	0.112	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	15890792	3R_15890792_SNP [dm3] 3R_20065070_SNP [dm6]	T	G	6.235e^-6	0.114	INTERGENIC
2R	14609460	2R_14609460_SNP [dm3] 2R_18721955_SNP [dm6]	A	T	6.239e^-6	0.114	INTRON Hs3st-A
3L	6317096	3L_6317096_SNP [dm3] 3L_6323996_SNP [dm6]	A	T	6.553e^-6	0.116	INTERGENIC
2R	20348873	2R_20348873_MNP [dm3] 2R_24461350_MNP [dm6]	TGG	AAA	6.600e^-6	0.116	INTRON CG13579
2R	3657739	2R_3657739_INS [dm3] 2R_7770234_INS [dm6]	A	ATGTAGATACATTCA...	6.627e^-6	0.116	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15876868	3R_15876868_SNP [dm3] 3R_20051146_SNP [dm6]	T	G	6.837e^-6	0.116	INTRON CG17193
3R	17788772	3R_17788772_SNP [dm3] 3R_21963050_SNP [dm6]	G	T	6.837e^-6	0.116	INTRON Eip93F
2L	14078418	2L_14078418_SNP [dm3] 2L_14078418_SNP [dm6]	C	T	6.842e^-6	0.116	INTRON nAChRalpha5
X	16679364	X_16679364_DEL [dm3] X_16785331_DEL [dm6]	CGGATGTTTCTGAACGCAAA...	C	6.869e^-6	0.116	UTR_3_PRIME CG9609 DOWNSTREAM mRpL22
3L	17915099	3L_17915099_SNP [dm3] 3L_17921999_SNP [dm6]	T	G	6.873e^-6	0.116	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15877377	3R_15877377_SNP [dm3] 3R_20051655_SNP [dm6]	C	A	6.967e^-6	0.116	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	16967013	3L_16967013_SNP [dm3] 3L_16973913_SNP [dm6]	C	G	6.990e^-6	0.116	INTRON Exn
3R	12853289	3R_12853289_SNP [dm3] 3R_17027567_SNP [dm6]	T	C	7.091e^-6	0.117	SPLICE_SITE_REGION Pxd SYNONYMOUS_CODING Pxd
X	8983805	X_8983805_DEL [dm3] X_9089772_DEL [dm6]	CATGGACTCCGATTTCGCC...	C	7.261e^-6	0.117	DOWNSTREAM CG6999 INTRON CG7033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	15892120	3R_15892120_SNP [dm3] 3R_20066398_SNP [dm6]	T	A	7.314e^-6	0.117	INTERGENIC
X	13676317	X_13676317_SNP [dm3] X_13782284_SNP [dm6]	C	G	7.353e^-6	0.117	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19715057	2L_19715057_DEL [dm3] 2L_19715057_DEL [dm6]	CACCGGGC	C	7.374e^-6	0.117	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	7682827	X_7682827_SNP [dm3] X_7788794_SNP [dm6]	T	C	7.453e^-6	0.117	INTERGENIC
2L	10646906	2L_10646906_SNP [dm3] 2L_10646906_SNP [dm6]	T	A	7.780e^-6	0.122	SYNONYMOUS_CODING CG17097	TF binding site mE1_TFBS_inv mE1_TFBS_run
2L	2429475	2L_2429475_INS [dm3] 2L_2429475_INS [dm6]	T	TCAAT	7.962e^-6	0.123	INTRON dpp
2L	10510862	2L_10510862_SNP [dm3] 2L_10510862_SNP [dm6]	C	A	7.976e^-6	0.123	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other
3R	25486788	3R_25486788_INS [dm3] 3R_29661066_INS [dm6]	G	GCGAG	8.254e^-6	0.126	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	6571082	3L_6571082_INS [dm3] 3L_6577982_INS [dm6]	A	ACTA	8.388e^-6	0.126	INTRON CG18769 & 1 other
3R	19895004	3R_19895004_SNP [dm3] 3R_24069282_SNP [dm6]	T	C	8.479e^-6	0.126	INTRON 4EHP
3L	8457906	3L_8457906_SNP [dm3] 3L_8464806_SNP [dm6]	A	G	8.509e^-6	0.126	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7997438	X_7997438_DEL [dm3] X_8103405_DEL [dm6]	CTTCGCC	C	8.516e^-6	0.126	UTR_3_PRIME Gclc
X	21813727	X_21813727_SNP [dm3] X_22411892_SNP [dm6]	A	T	8.590e^-6	0.126	INTERGENIC	transposable element FlyBase
3R	15892199	3R_15892199_SNP [dm3] 3R_20066477_SNP [dm6]	T	G	8.676e^-6	0.126	INTERGENIC
3R	10628954	3R_10628954_SNP [dm3] 3R_14803232_SNP [dm6]	C	T	8.775e^-6	0.127	SPLICE_SITE_REGION CG14857 DOWNSTREAM btsz INTRON CG14857	TF binding site mE1_TFBS_cad
X	7682831	X_7682831_SNP [dm3] X_7788798_SNP [dm6]	A	T	8.857e^-6	0.127	INTERGENIC
3L	18213441	3L_18213441_MNP [dm3] 3L_18220341_MNP [dm6]	GGG	TTT	8.976e^-6	0.128	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
X	21813721	X_21813721_SNP [dm3] X_22411886_SNP [dm6]	G	A	9.091e^-6	0.128	INTERGENIC	transposable element FlyBase
3R	11955831	3R_11955831_SNP [dm3] 3R_16130109_SNP [dm6]	C	G	9.296e^-6	0.13	INTRON Sb
2L	12282959	2L_12282959_SNP [dm3] 2L_12282959_SNP [dm6]	T	G	9.510e^-6	0.13	INTRON aret
X	12698800	X_12698800_DEL [dm3] X_12804767_DEL [dm6]	ATTACAATACAATACAATAC...	CC	9.533e^-6	0.13	DOWNSTREAM CG3775 INTRON Pde9
3R	25604867	3R_25604867_SNP [dm3] 3R_29779145_SNP [dm6]	A	C	9.551e^-6	0.13	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
3R	15877779	3R_15877779_SNP [dm3] 3R_20052057_SNP [dm6]	T	A	9.712e^-6	0.13	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	13676358	X_13676358_SNP [dm3] X_13782325_SNP [dm6]	C	G	9.794e^-6	0.13	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10462772	3R_10462772_SNP [dm3] 3R_14637050_SNP [dm6]	A	T	9.902e^-6	0.13	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17299930	3R_17299930_SNP [dm3] 3R_21474208_SNP [dm6]	T	A	9.909e^-6	0.13	INTERGENIC
3L	10206960	3L_10206960_DEL [dm3] 3L_10213860_DEL [dm6]	GTGATTGG	G	9.976e^-6	0.13	INTERGENIC
3L	975783	3L_975783_SNP [dm3] 3L_975783_SNP [dm6]	A	G	9.981e^-6	0.13	INTRON Glut1
3L	12107232	3L_12107232_SNP [dm3] 3L_12114132_SNP [dm6]	G	C	1.014e^-5	0.13	INTERGENIC
2L	15865530	2L_15865530_MNP [dm3] 2L_15865530_MNP [dm6]	AAC	CCT	1.014e^-5	0.13	UPSTREAM CG42792 INTERGENIC
X	18721960	X_18721960_DEL [dm3] X_18827927_DEL [dm6]	GGG	G	1.015e^-5	0.13	UTR_3_PRIME CG42450
3R	23185263	3R_23185263_INS [dm3] 3R_27359541_INS [dm6]	T	TCT	1.016e^-5	0.13	INTRON CG42534
X	13676316	X_13676316_SNP [dm3] X_13782283_SNP [dm6]	A	G	1.032e^-5	0.13	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18125696	2R_18125696_SNP [dm3] 2R_22238191_SNP [dm6]	T	A	1.034e^-5	0.13	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18133620	2R_18133620_SNP [dm3] 2R_22246115_SNP [dm6]	A	T	1.049e^-5	0.131	INTRON dve
3R	15344921	3R_15344921_SNP [dm3] 3R_19519199_SNP [dm6]	T	C	1.077e^-5	0.134	INTRON Dys
3L	14909030	3L_14909030_SNP [dm3] 3L_14915930_SNP [dm6]	G	T	1.107e^-5	0.136	INTRON DCX-EMAP
X	13676340	X_13676340_SNP [dm3] X_13782307_SNP [dm6]	C	G	1.115e^-5	0.136	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3383784	X_3383784_DEL [dm3] X_3489751_DEL [dm6]	AATATATCCA	A	1.120e^-5	0.136	UTR_3_PRIME CG10803 DOWNSTREAM CG10803 INTRON CR44999	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	8766474	X_8766474_DEL [dm3] X_8872441_DEL [dm6]	AA	A	1.127e^-5	0.136	UTR_3_PRIME CG12075 DOWNSTREAM Moe & 1 other
3R	15892611	3R_15892611_INS [dm3] 3R_20066889_INS [dm6]	A	AT	1.129e^-5	0.136	INTERGENIC
2R	18549477	2R_18549477_DEL [dm3] 2R_22661972_DEL [dm6]	TT	T	1.146e^-5	0.136	UTR_5_PRIME CG42566 DOWNSTREAM CG42565 & 2 others
2R	20378584	2R_20378584_DEL [dm3] 2R_24491061_DEL [dm6]	TT	T	1.148e^-5	0.136	DOWNSTREAM CG13579 INTERGENIC
3R	15890709	3R_15890709_SNP [dm3] 3R_20064987_SNP [dm6]	G	A	1.191e^-5	0.14	INTERGENIC
3R	15876056	3R_15876056_SNP [dm3] 3R_20050334_SNP [dm6]	T	A	1.199e^-5	0.14	INTRON CG17193
3L	13534493	3L_13534493_SNP [dm3] 3L_13541393_SNP [dm6]	G	A	1.210e^-5	0.14	INTRON bru-3
2L	12283056	2L_12283056_SNP [dm3] 2L_12283056_SNP [dm6]	G	T	1.213e^-5	0.14	INTRON aret
3L	18840698	3L_18840698_DEL [dm3] 3L_18847598_DEL [dm6]	TCACT	T	1.244e^-5	0.143	INTERGENIC
3R	15877853	3R_15877853_SNP [dm3] 3R_20052131_SNP [dm6]	A	C	1.258e^-5	0.143	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	15578111	X_15578111_SNP [dm3] X_15684078_SNP [dm6]	C	T	1.268e^-5	0.143	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2951054	3L_2951054_INS [dm3] 3L_2951054_INS [dm6]	T	TTTGTTGCGGCTGCTGCAAC...	1.271e^-5	0.143	CODON_INSERTION CG32846 INTRON Shab
X	13676320	X_13676320_SNP [dm3] X_13782287_SNP [dm6]	A	T	1.283e^-5	0.143	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12185743	2L_12185743_DEL [dm3] 2L_12185743_DEL [dm6]	AGCTATACAC	A	1.285e^-5	0.143	INTRON aret	TF binding site BDTNP1_TFBS_dl
3R	15892304	3R_15892304_SNP [dm3] 3R_20066582_SNP [dm6]	C	T	1.298e^-5	0.143	INTERGENIC
X	20356166	X_20356166_DEL [dm3] X_20485139_DEL [dm6]	TT	T	1.308e^-5	0.143	INTRON RhoGAP19D
3L	13534528	3L_13534528_INS [dm3] 3L_13541428_INS [dm6]	A	AGCGTA	1.313e^-5	0.143	INTRON bru-3
3R	14166036	3R_14166036_SNP [dm3] 3R_18340314_SNP [dm6]	A	T	1.314e^-5	0.143	INTRON CG15803
3L	12107226	3L_12107226_SNP [dm3] 3L_12114126_SNP [dm6]	T	A	1.331e^-5	0.144	INTERGENIC
3R	15723694	3R_15723694_SNP [dm3] 3R_19897972_SNP [dm6]	G	A	1.334e^-5	0.144	SYNONYMOUS_CODING CG4733 DOWNSTREAM CG4538 INTRON CG4538
X	3665405	X_3665405_INS [dm3] X_3771372_INS [dm6]	G	GG	1.354e^-5	0.144	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3R	15892011	3R_15892011_SNP [dm3] 3R_20066289_SNP [dm6]	A	T	1.357e^-5	0.144	INTERGENIC
3L	18626730	3L_18626730_SNP [dm3] 3L_18633630_SNP [dm6]	T	G	1.361e^-5	0.144	INTRON MYPT-75D
3R	19447129	3R_19447129_SNP [dm3] 3R_23621407_SNP [dm6]	A	G	1.377e^-5	0.144	INTRON CG31145
3R	15892640	3R_15892640_SNP [dm3] 3R_20066918_SNP [dm6]	A	G	1.381e^-5	0.144	INTERGENIC
3R	15894982	3R_15894982_SNP [dm3] 3R_20069260_SNP [dm6]	T	C	1.387e^-5	0.144	INTERGENIC
3L	17025857	3L_17025857_DEL [dm3] 3L_17032757_DEL [dm6]	CTC	C	1.392e^-5	0.144	UPSTREAM Ilp8 & 1 other DOWNSTREAM CR43250 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15875928	3R_15875928_SNP [dm3] 3R_20050206_SNP [dm6]	T	G	1.424e^-5	0.146	INTRON CG17193
3R	14166037	3R_14166037_SNP [dm3] 3R_18340315_SNP [dm6]	T	A	1.427e^-5	0.146	INTRON CG15803
3R	15892694	3R_15892694_SNP [dm3] 3R_20066972_SNP [dm6]	T	C	1.442e^-5	0.147	INTERGENIC
3R	16997405	3R_16997405_SNP [dm3] 3R_21171683_SNP [dm6]	A	T	1.471e^-5	0.149	INTRON SNF4Agamma
3R	15892521	3R_15892521_SNP [dm3] 3R_20066799_SNP [dm6]	G	A	1.474e^-5	0.149	INTERGENIC
2L	17404767	2L_17404767_SNP [dm3] 2L_17404767_SNP [dm6]	A	G	1.510e^-5	0.152	NON_SYNONYMOUS_CODING CLIP-190 DOWNSTREAM CLIP-190
3R	15889001	3R_15889001_SNP [dm3] 3R_20063279_SNP [dm6]	C	A	1.529e^-5	0.153	INTERGENIC
3L	4981535	3L_4981535_DEL [dm3] 3L_4981535_DEL [dm6]	GG	G	1.575e^-5	0.156	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
2R	8776020	2R_8776020_INS [dm3] 2R_12888515_INS [dm6]	T	TAGT	1.598e^-5	0.157	INTRON vg
3L	15571950	3L_15571950_DEL [dm3] 3L_15578850_DEL [dm6]	ACA	A	1.598e^-5	0.157	UTR_3_PRIME mrn DOWNSTREAM CG16979	TF binding site mE1_TFBS_cad
2R	7274858	2R_7274858_INS [dm3] 2R_11387353_INS [dm6]	A	AT	1.622e^-5	0.158	INTRON sprt & 1 other
3R	15877457	3R_15877457_SNP [dm3] 3R_20051735_SNP [dm6]	G	A	1.628e^-5	0.158	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	14759979	3R_14759979_SNP [dm3] 3R_18934257_SNP [dm6]	A	C	1.669e^-5	0.159	INTRON CG42613
X	9387528	X_9387528_DEL [dm3] X_9493495_DEL [dm6]	CC	C	1.673e^-5	0.159	INTRON mgl
3L	10523798	3L_10523798_INS [dm3] 3L_10530698_INS [dm6]	A	AA	1.677e^-5	0.159	INTRON A2bp1
2R	9506305	2R_9506305_INS [dm3] 2R_13618800_INS [dm6]	C	CCGG	1.678e^-5	0.159	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13946164	2L_13946164_SNP [dm3] 2L_13946164_SNP [dm6]	A	G	1.680e^-5	0.159	INTRON Ance-3 & 1 other
3R	15877845	3R_15877845_SNP [dm3] 3R_20052123_SNP [dm6]	C	T	1.704e^-5	0.159	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	3217742	2L_3217742_DEL [dm3] 2L_3217742_DEL [dm6]	TA	T	1.730e^-5	0.159	INTERGENIC
2R	6825205	2R_6825205_SNP [dm3] 2R_10937700_SNP [dm6]	T	C	1.736e^-5	0.159	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15889002	3R_15889002_SNP [dm3] 3R_20063280_SNP [dm6]	C	T	1.738e^-5	0.159	INTERGENIC
3R	19970509	3R_19970509_SNP [dm3] 3R_24144787_SNP [dm6]	A	G	1.744e^-5	0.159	INTRON Kal1	TF binding site BDTNP1_TFBS_dl
2R	4157569	2R_4157569_DEL [dm3] 2R_8270064_DEL [dm6]	AT	C	1.747e^-5	0.159	UPSTREAM CG30371 INTERGENIC
3L	10253110	3L_10253110_SNP [dm3] 3L_10260010_SNP [dm6]	T	G	1.747e^-5	0.159	INTERGENIC
3L	4740380	3L_4740380_DEL [dm3] 3L_4740380_DEL [dm6]	AGCCATA	A	1.753e^-5	0.159	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
2R	14609466	2R_14609466_SNP [dm3] 2R_18721961_SNP [dm6]	T	C	1.757e^-5	0.159	INTRON Hs3st-A
2L	7783290	2L_7783290_DEL [dm3] 2L_7783290_DEL [dm6]	ATA	A	1.778e^-5	0.16	SPLICE_SITE_REGION CG7154 DOWNSTREAM CG7164 INTRON CG7154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4572184	X_4572184_SNP [dm3] X_4678151_SNP [dm6]	G	T	1.786e^-5	0.16	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12168923	3L_12168923_SNP [dm3] 3L_12175823_SNP [dm6]	C	T	1.787e^-5	0.16	UPSTREAM Rh7 INTERGENIC
3R	15892579	3R_15892579_SNP [dm3] 3R_20066857_SNP [dm6]	A	G	1.806e^-5	0.16	INTERGENIC
3R	15892593	3R_15892593_SNP [dm3] 3R_20066871_SNP [dm6]	G	T	1.815e^-5	0.16	INTERGENIC
3L	1024502	3L_1024502_SNP [dm3] 3L_1024502_SNP [dm6]	C	T	1.817e^-5	0.16	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9437491	X_9437491_DEL [dm3] X_9543458_DEL [dm6]	ATATGTTGATAAACGTATT...	A	1.832e^-5	0.161	INTRON CG32700
3L	10253088	3L_10253088_SNP [dm3] 3L_10259988_SNP [dm6]	G	T	1.856e^-5	0.162	INTERGENIC
2L	6355193	2L_6355193_INS [dm3] 2L_6355193_INS [dm6]	A	ATCA	1.862e^-5	0.162	UPSTREAM ppk7 INTRON ppk14
3L	17803009	3L_17803009_DEL [dm3] 3L_17809909_DEL [dm6]	TT	T	1.901e^-5	0.164	UPSTREAM CG32191 INTRON cln3
3R	18471548	3R_18471548_SNP [dm3] 3R_22645826_SNP [dm6]	A	G	1.974e^-5	0.17	INTRON CG45058
3R	15881036	3R_15881036_SNP [dm3] 3R_20055314_SNP [dm6]	C	T	2.012e^-5	0.172	INTRON CG17193
3R	12160898	3R_12160898_DEL [dm3] 3R_16335176_DEL [dm6]	ATACAATTTACTAT...	TG	2.033e^-5	0.172	INTRON Sulf1
X	5414532	X_5414532_DEL [dm3] X_5520499_DEL [dm6]	GCCTAGTTCCC...	G	2.036e^-5	0.172	INTERGENIC
2L	923693	2L_923693_SNP [dm3] 2L_923693_SNP [dm6]	C	T	2.036e^-5	0.172	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12407886	X_12407886_DEL [dm3] X_12513853_DEL [dm6]	AGA	A	2.042e^-5	0.172	INTRON CG2556	TF binding site mE1_TFBS_HSA
X	3333201	X_3333201_INS [dm3] X_3439168_INS [dm6]	T	TAT	2.052e^-5	0.172	INTRON CR44999 & 1 other
3R	15875781	3R_15875781_SNP [dm3] 3R_20050059_SNP [dm6]	A	G	2.076e^-5	0.172	INTRON CG17193
3L	961505	3L_961505_DEL [dm3] 3L_961505_DEL [dm6]	GG	A	2.082e^-5	0.172	INTRON Glut1
3R	9587906	3R_9587906_SNP [dm3] 3R_13762184_SNP [dm6]	A	G	2.087e^-5	0.172	UTR_3_PRIME CG34383 DOWNSTREAM CG34383 INTRON CG34383
2L	12283030	2L_12283030_SNP [dm3] 2L_12283030_SNP [dm6]	C	T	2.100e^-5	0.173	INTRON aret
2L	21070327	2L_21070327_INS [dm3] 2L_21070327_INS [dm6]	T	TT	2.115e^-5	0.173	UPSTREAM CG9265 INTRON CG9265
3R	17300071	3R_17300071_SNP [dm3] 3R_21474349_SNP [dm6]	C	T	2.153e^-5	0.176	INTERGENIC
3R	1206780	3R_1206780_DEL [dm3] 3R_5381058_DEL [dm6]	AA	A	2.164e^-5	0.176	INTRON kkv
X	14135621	X_14135621_SNP [dm3] X_14241588_SNP [dm6]	G	T	2.197e^-5	0.177	SYNONYMOUS_CODING mRNA-cap	TF binding site mE1_TFBS_cad
3L	969693	3L_969693_INS [dm3] 3L_969693_INS [dm6]	T	TT	2.218e^-5	0.177	INTRON Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6519178	3L_6519178_SNP [dm3] 3L_6526078_SNP [dm6]	A	G	2.221e^-5	0.177	INTRON sfl
3L	5944422	3L_5944422_DEL [dm3] 3L_5951322_DEL [dm6]	GC	G	2.230e^-5	0.177	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21456553	3R_21456553_SNP [dm3] 3R_25630831_SNP [dm6]	A	G	2.246e^-5	0.177	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15245946	3R_15245946_SNP [dm3] 3R_19420224_SNP [dm6]	C	T	2.253e^-5	0.177	INTRON CG31221
3L	1807426	3L_1807426_DEL [dm3] 3L_1807426_DEL [dm6]	AT	A	2.259e^-5	0.177	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC
X	17635883	X_17635883_SNP [dm3] X_17741850_SNP [dm6]	C	T	2.260e^-5	0.177	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16553234	2R_16553234_DEL [dm3] 2R_20665729_DEL [dm6]	AT	C	2.261e^-5	0.177	UPSTREAM Fem-1 INTRON Fem-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19970510	3R_19970510_SNP [dm3] 3R_24144788_SNP [dm6]	G	T	2.278e^-5	0.177	INTRON Kal1	TF binding site BDTNP1_TFBS_dl
3R	15348229	3R_15348229_INS [dm3] 3R_19522507_INS [dm6]	A	AA	2.295e^-5	0.178	INTRON Dys
2R	5664884	2R_5664884_DEL [dm3] 2R_9777379_DEL [dm6]	GCCCAGAACTCAG...	G	2.306e^-5	0.178	INTRON CG1688
3R	11252079	3R_11252079_DEL [dm3] 3R_15426357_DEL [dm6]	GCTC	G	2.336e^-5	0.18	INTRON CG6118
2L	1711319	2L_1711319_SNP [dm3] 2L_1711319_SNP [dm6]	T	A	2.348e^-5	0.18	UTR_3_PRIME mRpL48 & 1 other UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19693699	2L_19693699_SNP [dm3] 2L_19693699_SNP [dm6]	G	A	2.377e^-5	0.18	INTRON Lar
2R	18127354	2R_18127354_SNP [dm3] 2R_22239849_SNP [dm6]	G	A	2.381e^-5	0.18	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1927757	3L_1927757_SNP [dm3] 3L_1927757_SNP [dm6]	C	G	2.381e^-5	0.18	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2L	12283300	2L_12283300_DEL [dm3] 2L_12283300_DEL [dm6]	CC	C	2.415e^-5	0.182	INTRON aret
X	20760997	X_20760997_INS [dm3] X_20889970_INS [dm6]	A	AA	2.443e^-5	0.183	INTRON shakB
2R	19890208	2R_19890208_DEL [dm3] 2R_24002685_DEL [dm6]	TCATCCATT	T	2.459e^-5	0.183	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3867643	3L_3867643_SNP [dm3] 3L_3867643_SNP [dm6]	G	C	2.461e^-5	0.183	INTERGENIC
X	18370050	X_18370050_INS [dm3] X_18476017_INS [dm6]	T	TA	2.462e^-5	0.183	INTRON CG32547	TF binding site mE1_TFBS_HSA
2L	3131219	2L_3131219_SNP [dm3] 2L_3131219_SNP [dm6]	T	A	2.477e^-5	0.183	INTRON toc
3R	14368487	3R_14368487_SNP [dm3] 3R_18542765_SNP [dm6]	T	C	2.491e^-5	0.183	INTRON fru
3R	15892451	3R_15892451_SNP [dm3] 3R_20066729_SNP [dm6]	G	T	2.511e^-5	0.184	INTERGENIC
2L	16614018	2L_16614018_INS [dm3] 2L_16614018_INS [dm6]	T	TT	2.541e^-5	0.184	INTRON CG42389
2R	20403002	2R_20403002_INS [dm3] 2R_24515479_INS [dm6]	A	ATGTATGTA	2.541e^-5	0.184	UPSTREAM Ir60b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	14670103	3L_14670103_SNP [dm3] 3L_14677003_SNP [dm6]	A	T	2.543e^-5	0.184	INTRON ome & 1 other
3R	15888896	3R_15888896_SNP [dm3] 3R_20063174_SNP [dm6]	A	C	2.544e^-5	0.184	INTERGENIC
3R	23484918	3R_23484918_SNP [dm3] 3R_27659196_SNP [dm6]	A	T	2.561e^-5	0.184	INTRON Mlc1
X	3658363	X_3658363_INS [dm3] X_3764330_INS [dm6]	A	AA	2.576e^-5	0.184	INTRON tlk	TF binding site BDTNP1_TFBS_dl
3L	10415609	3L_10415609_SNP [dm3] 3L_10422509_SNP [dm6]	T	A	2.602e^-5	0.184	INTERGENIC
3R	15877349	3R_15877349_DEL [dm3] 3R_20051627_DEL [dm6]	TCAA	T	2.609e^-5	0.184	INTRON CG17193
3R	15877356	3R_15877356_DEL [dm3] 3R_20051634_DEL [dm6]	AAACGACACATCC...	A	2.609e^-5	0.184	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15877373	3R_15877373_MNP [dm3] 3R_20051651_MNP [dm6]	GCA	TAT	2.609e^-5	0.184	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	26070513	3R_26070513_DEL [dm3] 3R_30244791_DEL [dm6]	TGGAGAAT	T	2.637e^-5	0.185	INTRON CG9733	TF binding site mE1_TFBS_chinmo
3R	16471309	3R_16471309_INS [dm3] 3R_20645587_INS [dm6]	A	AGTTTTGGA	2.650e^-5	0.185	SPLICE_SITE_REGION GluRIIE INTRON GluRIIE
2R	19358438	2R_19358438_INS [dm3] 2R_23470915_INS [dm6]	T	TAGAT	2.658e^-5	0.185	INTRON CG43795 & 1 other
2L	19806150	2L_19806150_SNP [dm3] 2L_19806150_SNP [dm6]	A	G	2.675e^-5	0.186	INTRON sick
2L	3081699	2L_3081699_SNP [dm3] 2L_3081699_SNP [dm6]	C	A	2.682e^-5	0.186	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10628789	3R_10628789_SNP [dm3] 3R_14803067_SNP [dm6]	C	T	2.690e^-5	0.186	SYNONYMOUS_CODING CG14857
3L	8076397	3L_8076397_SNP [dm3] 3L_8083297_SNP [dm6]	A	G	2.703e^-5	0.186	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
X	9050782	X_9050782_SNP [dm3] X_9156749_SNP [dm6]	G	A	2.738e^-5	0.187	UPSTREAM His3.3B DOWNSTREAM Ost48 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	15877846	3R_15877846_SNP [dm3] 3R_20052124_SNP [dm6]	A	G	2.738e^-5	0.187	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	4401260	X_4401260_INS [dm3] X_4507227_INS [dm6]	T	TCT	2.750e^-5	0.187	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19447265	3R_19447265_SNP [dm3] 3R_23621543_SNP [dm6]	T	C	2.784e^-5	0.188	INTRON CG31145
3R	15041595	3R_15041595_SNP [dm3] 3R_19215873_SNP [dm6]	T	A	2.793e^-5	0.188	UTR_3_PRIME vib DOWNSTREAM cry
3R	15877862	3R_15877862_SNP [dm3] 3R_20052140_SNP [dm6]	C	T	2.807e^-5	0.189	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	12209977	2L_12209977_SNP [dm3] 2L_12209977_SNP [dm6]	G	C	2.829e^-5	0.189	UTR_3_PRIME CG31759 INTRON aret
X	21112429	X_21112429_INS [dm3] X_21241402_INS [dm6]	G	GCTCCGAGGGGATG...	2.845e^-5	0.189	INTRON CG32521
3L	21150093	3L_21150093_SNP [dm3] 3L_21156993_SNP [dm6]	T	A	2.847e^-5	0.189	INTRON Ac78C
X	10067695	X_10067695_SNP [dm3] X_10173662_SNP [dm6]	C	T	2.855e^-5	0.189	INTRON CG43902 & 1 other
3R	8156491	3R_8156491_SNP [dm3] 3R_12330769_SNP [dm6]	G	T	2.874e^-5	0.19	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3872627	3L_3872627_SNP [dm3] 3L_3872627_SNP [dm6]	A	G	2.880e^-5	0.19	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3L	10679744	3L_10679744_SNP [dm3] 3L_10686644_SNP [dm6]	G	A	2.902e^-5	0.19	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13211186	3L_13211186_SNP [dm3] 3L_13218086_SNP [dm6]	C	A	2.943e^-5	0.192	DOWNSTREAM CR45098 & 1 other INTERGENIC
3L	14386240	3L_14386240_SNP [dm3] 3L_14393140_SNP [dm6]	T	A	2.988e^-5	0.194	INTERGENIC
X	17335274	X_17335274_INS [dm3] X_17441241_INS [dm6]	T	TT	2.993e^-5	0.194	INTRON CG12994
X	15578115	X_15578115_SNP [dm3] X_15684082_SNP [dm6]	G	A	2.997e^-5	0.194	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21305593	2L_21305593_SNP [dm3] 2L_21305593_SNP [dm6]	A	T	3.015e^-5	0.194	INTRON Mio
2R	17746780	2R_17746780_SNP [dm3] 2R_21859275_SNP [dm6]	C	T	3.028e^-5	0.194	INTERGENIC
2L	19004441	2L_19004441_SNP [dm3] 2L_19004441_SNP [dm6]	T	A	3.031e^-5	0.194	INTRON CG31793	TF binding site mE1_TFBS_chinmo
3R	15699801	3R_15699801_SNP [dm3] 3R_19874079_SNP [dm6]	G	A	3.049e^-5	0.194	INTRON CG4562
2R	17920667	2R_17920667_SNP [dm3] 2R_22033162_SNP [dm6]	C	A	3.054e^-5	0.194	INTRON CG34370
3L	14644005	3L_14644005_SNP [dm3] 3L_14650905_SNP [dm6]	T	C	3.056e^-5	0.194	INTRON dlp	TF binding site mE1_TFBS_cnc
3R	26269557	3R_26269557_DEL [dm3] 3R_30443835_DEL [dm6]	TT	T	3.066e^-5	0.194	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
3L	10415866	3L_10415866_SNP [dm3] 3L_10422766_SNP [dm6]	A	G	3.075e^-5	0.194	INTERGENIC
3R	11955817	3R_11955817_SNP [dm3] 3R_16130095_SNP [dm6]	G	A	3.093e^-5	0.194	INTRON Sb
2L	14078389	2L_14078389_DEL [dm3] 2L_14078389_DEL [dm6]	TAAATTCCGCTTGTTATTTT...	T	3.108e^-5	0.194	INTRON nAChRalpha5
2R	20270585	2R_20270585_DEL [dm3] 2R_24383062_DEL [dm6]	AA	A	3.114e^-5	0.194	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo
3R	15888186	3R_15888186_SNP [dm3] 3R_20062464_SNP [dm6]	C	A	3.125e^-5	0.194	INTERGENIC
3L	12708133	3L_12708133_SNP [dm3] 3L_12715033_SNP [dm6]	G	A	3.126e^-5	0.194	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15893343	3R_15893343_INS [dm3] 3R_20067621_INS [dm6]	A	AG	3.175e^-5	0.196	INTERGENIC
3R	10628425	3R_10628425_SNP [dm3] 3R_14802703_SNP [dm6]	C	A	3.181e^-5	0.196	INTRON CG14857
X	20576916	X_20576916_SNP [dm3] X_20705889_SNP [dm6]	A	T	3.195e^-5	0.196	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	19686298	2L_19686298_SNP [dm3] 2L_19686298_SNP [dm6]	C	A	3.219e^-5	0.197	INTRON Lar
3L	16432112	3L_16432112_SNP [dm3] 3L_16439012_SNP [dm6]	A	G	3.278e^-5	0.2	INTRON CG33158 & 1 other
3L	7815860	3L_7815860_SNP [dm3] 3L_7822760_SNP [dm6]	G	C	3.295e^-5	0.2	INTRON Pdp1
2R	20513977	2R_20513977_SNP [dm3] 2R_24626454_SNP [dm6]	G	T	3.302e^-5	0.2	INTRON CG13594
X	17635291	X_17635291_INS [dm3] X_17741258_INS [dm6]	C	CC	3.349e^-5	0.202	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	1251043	2R_1251043_DEL [dm3] 2R_5363538_DEL [dm6]	CCAATATAAGATATTCTCCA...	C	3.360e^-5	0.202	UPSTREAM CG10417 INTRON CR42646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6519214	3L_6519214_SNP [dm3] 3L_6526114_SNP [dm6]	T	C	3.398e^-5	0.203	INTRON sfl
3R	11531155	3R_11531155_INS [dm3] 3R_15705433_INS [dm6]	G	GATGCCCAAG	3.402e^-5	0.203	INTRON CG5404
2R	5777768	2R_5777768_DEL [dm3] 2R_9890263_DEL [dm6]	AGACCTTTAA	A	3.421e^-5	0.204	DOWNSTREAM CG12923 INTRON CG1513 & 1 other
2R	18044500	2R_18044500_INS [dm3] 2R_22156995_INS [dm6]	G	GG	3.445e^-5	0.204	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	17229184	2R_17229184_INS [dm3] 2R_21341679_INS [dm6]	G	GG	3.452e^-5	0.204	UTR_3_PRIME dom UPSTREAM CG15666
2L	18304027	2L_18304027_DEL [dm3] 2L_18304027_DEL [dm6]	TAGTTCAAACGCGGAGAGAA...	T	3.475e^-5	0.205	INTERGENIC
X	3922966	X_3922966_INS [dm3] X_4028933_INS [dm6]	C	CACATGTGTTCAAATTTACA...	3.485e^-5	0.205	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15245399	3R_15245399_SNP [dm3] 3R_19419677_SNP [dm6]	G	C	3.515e^-5	0.205	INTRON CG31221
3R	15241936	3R_15241936_SNP [dm3] 3R_19416214_SNP [dm6]	C	T	3.524e^-5	0.205	SYNONYMOUS_CODING CG31221
2L	17201767	2L_17201767_SNP [dm3] 2L_17201767_SNP [dm6]	C	T	3.542e^-5	0.205	INTRON beat-IIIc
3L	14386253	3L_14386253_SNP [dm3] 3L_14393153_SNP [dm6]	G	A	3.543e^-5	0.205	INTERGENIC
2R	1733902	2R_1733902_SNP [dm3] 2R_5846397_SNP [dm6]	G	C	3.544e^-5	0.205	INTRON dpr12
3L	17537340	3L_17537340_SNP [dm3] 3L_17544240_SNP [dm6]	T	A	3.555e^-5	0.205	INTRON Nedd4
2R	16626342	2R_16626342_DEL [dm3] 2R_20738837_DEL [dm6]	GC	G	3.568e^-5	0.205	INTRON dpr
3L	18506642	3L_18506642_INS [dm3] 3L_18513542_INS [dm6]	T	TAGAAATGCCT...	3.581e^-5	0.205	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15885852	3R_15885852_SNP [dm3] 3R_20060130_SNP [dm6]	T	C	3.594e^-5	0.206	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
2R	7205449	2R_7205449_SNP [dm3] 2R_11317944_SNP [dm6]	C	G	3.608e^-5	0.206	UPSTREAM nompA INTRON nompA
3R	15893334	3R_15893334_SNP [dm3] 3R_20067612_SNP [dm6]	A	T	3.618e^-5	0.206	INTERGENIC
3L	10416006	3L_10416006_SNP [dm3] 3L_10422906_SNP [dm6]	T	G	3.653e^-5	0.207	INTERGENIC
2R	13777802	2R_13777802_DEL [dm3] 2R_17890297_DEL [dm6]	TT	T	3.686e^-5	0.208	UPSTREAM PPO1 INTRON Elk
3R	15895188	3R_15895188_SNP [dm3] 3R_20069466_SNP [dm6]	T	A	3.693e^-5	0.208	INTERGENIC
3L	6317095	3L_6317095_SNP [dm3] 3L_6323995_SNP [dm6]	C	A	3.704e^-5	0.208	INTERGENIC
3L	1829237	3L_1829237_SNP [dm3] 3L_1829237_SNP [dm6]	A	T	3.719e^-5	0.208	UPSTREAM Cpr62Ba INTRON Cpr62Ba
X	14920698	X_14920698_INS [dm3] X_15026665_INS [dm6]	A	ACAATA	3.737e^-5	0.209	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_twi
3R	17300061	3R_17300061_SNP [dm3] 3R_21474339_SNP [dm6]	A	G	3.759e^-5	0.209	INTERGENIC
X	10259207	X_10259207_SNP [dm3] X_10365174_SNP [dm6]	T	G	3.765e^-5	0.209	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17597830	2L_17597830_DEL [dm3] 2L_17597830_DEL [dm6]	TAT	A	3.788e^-5	0.209	INTRON Sytalpha
3R	15875900	3R_15875900_SNP [dm3] 3R_20050178_SNP [dm6]	T	G	3.797e^-5	0.209	INTRON CG17193
X	15578022	X_15578022_DEL [dm3] X_15683989_DEL [dm6]	ATGTGTCAC	A	3.818e^-5	0.21	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15180912	3R_15180912_INS [dm3] 3R_19355190_INS [dm6]	T	TGTGAGAAACTGATACTCAC...	3.836e^-5	0.21	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	9244388	2R_9244388_SNP [dm3] 2R_13356883_SNP [dm6]	C	T	3.836e^-5	0.21	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3701391	3L_3701391_DEL [dm3] 3L_3701391_DEL [dm6]	TTTATT	T	3.874e^-5	0.211	INTERGENIC
3R	15890714	3R_15890714_SNP [dm3] 3R_20064992_SNP [dm6]	G	A	3.910e^-5	0.213	INTERGENIC
2L	7253312	2L_7253312_INS [dm3] 2L_7253312_INS [dm6]	T	TTCTATTT	3.927e^-5	0.213	UPSTREAM CG13786 INTERGENIC
3R	14915383	3R_14915383_INS [dm3] 3R_19089661_INS [dm6]	A	AA	3.953e^-5	0.214	INTRON cdi
3L	10679742	3L_10679742_SNP [dm3] 3L_10686642_SNP [dm6]	C	T	3.999e^-5	0.215	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19625804	3L_19625804_INS [dm3] 3L_19632704_INS [dm6]	A	AA	4.002e^-5	0.215	UTR_5_PRIME wnd INTRON wnd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	15578117	X_15578117_SNP [dm3] X_15684084_SNP [dm6]	G	C	4.011e^-5	0.215	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16762016	3R_16762016_SNP [dm3] 3R_20936294_SNP [dm6]	T	C	4.017e^-5	0.215	INTRON CG31191
3R	9835286	3R_9835286_SNP [dm3] 3R_14009564_SNP [dm6]	G	A	4.072e^-5	0.216	INTRON rdx
2R	19688449	2R_19688449_INS [dm3] 2R_23800926_INS [dm6]	A	ACTTAAGCCGA...	4.072e^-5	0.216	UPSTREAM CG30177 INTERGENIC
3L	11603222	3L_11603222_INS [dm3] 3L_11610122_INS [dm6]	C	CC	4.100e^-5	0.217	UPSTREAM CG42832 & 1 other DOWNSTREAM Muc68Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20172801	2L_20172801_SNP [dm3] 2L_20172801_SNP [dm6]	C	T	4.102e^-5	0.217	INTERGENIC	transposable element FlyBase
3L	7044953	3L_7044953_SNP [dm3] 3L_7051853_SNP [dm6]	T	C	4.126e^-5	0.217	INTRON Mp
3R	17299955	3R_17299955_SNP [dm3] 3R_21474233_SNP [dm6]	C	G	4.132e^-5	0.217	INTERGENIC
2L	4693842	2L_4693842_INS [dm3] 2L_4693842_INS [dm6]	C	CTTCCGCAGTTTC...	4.162e^-5	0.217	UPSTREAM CG34351 INTERGENIC
2R	10063282	2R_10063282_SNP [dm3] 2R_14175777_SNP [dm6]	C	T	4.164e^-5	0.217	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	13723660	3R_13723660_SNP [dm3] 3R_17897938_SNP [dm6]	G	T	4.214e^-5	0.217	INTRON Rim
3L	609639	3L_609639_INS [dm3] 3L_609639_INS [dm6]	T	TT	4.234e^-5	0.217	UPSTREAM CR44513 INTERGENIC
3L	783426	3L_783426_DEL [dm3] 3L_783426_DEL [dm6]	CATTGAATTGC...	C	4.236e^-5	0.217	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	15893425	3R_15893425_SNP [dm3] 3R_20067703_SNP [dm6]	C	T	4.239e^-5	0.217	INTERGENIC
2L	1613034	2L_1613034_SNP [dm3] 2L_1613034_SNP [dm6]	C	G	4.242e^-5	0.217	DOWNSTREAM CG14352 INTRON RFeSP	TF binding site mE1_TFBS_chinmo
2L	11144098	2L_11144098_DEL [dm3] 2L_11144098_DEL [dm6]	TGATACAGGAGT...	T	4.248e^-5	0.217	DOWNSTREAM CG31867 INTRON Gyc32E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6784933	2R_6784933_INS [dm3] 2R_10897428_INS [dm6]	T	TT	4.255e^-5	0.217	DOWNSTREAM Rpb5 & 1 other INTRON CG7712	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_ttk
3R	15891134	3R_15891134_SNP [dm3] 3R_20065412_SNP [dm6]	A	G	4.258e^-5	0.217	INTERGENIC
2L	3095852	2L_3095852_DEL [dm3] 2L_3095852_DEL [dm6]	AACCTAACCG	A	4.269e^-5	0.217	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_Trl
X	15578017	X_15578017_DEL [dm3] X_15683984_DEL [dm6]	TC	T	4.299e^-5	0.217	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16085526	3R_16085526_SNP [dm3] 3R_20259804_SNP [dm6]	A	G	4.304e^-5	0.217	INTRON cic	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5934932	2L_5934932_DEL [dm3] 2L_5934932_DEL [dm6]	AG	T	4.323e^-5	0.217	INTRON dsf	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	11087531	3L_11087531_SNP [dm3] 3L_11094431_SNP [dm6]	T	G	4.381e^-5	0.217	UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
2R	19821429	2R_19821429_DEL [dm3] 2R_23933906_DEL [dm6]	AA	A	4.395e^-5	0.217	SPLICE_SITE_DONOR Ca-P60A UPSTREAM Ca-P60A INTRON Ca-P60A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15768692	3R_15768692_SNP [dm3] 3R_19942970_SNP [dm6]	A	G	4.399e^-5	0.217	INTRON Hs6st
3R	25095609	3R_25095609_SNP [dm3] 3R_29269887_SNP [dm6]	C	T	4.399e^-5	0.217	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	20367528	2R_20367528_DEL [dm3] 2R_24480005_DEL [dm6]	TCTCTCATCT	T	4.403e^-5	0.217	INTRON CG13579
3L	10253080	3L_10253080_SNP [dm3] 3L_10259980_SNP [dm6]	T	A	4.410e^-5	0.217	INTERGENIC
3L	17537325	3L_17537325_DEL [dm3] 3L_17544225_DEL [dm6]	TTAATCATTTTT...	T	4.421e^-5	0.217	INTRON Nedd4
X	17628810	X_17628810_SNP [dm3] X_17734777_SNP [dm6]	C	A	4.422e^-5	0.217	UTR_5_PRIME CG42684 INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16471301	3R_16471301_DEL [dm3] 3R_20645579_DEL [dm6]	ATATA	A	4.427e^-5	0.217	INTRON GluRIIE
2R	10223310	2R_10223310_DEL [dm3] 2R_14335805_DEL [dm6]	TTGGGTAGCTT...	T	4.427e^-5	0.217	INTRON Shroom
3L	12112682	3L_12112682_INS [dm3] 3L_12119582_INS [dm6]	A	AATTTAAA	4.429e^-5	0.217	UTR_3_PRIME ssp UPSTREAM CG11560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe
X	19945377	X_19945377_INS [dm3] X_20051344_INS [dm6]	A	ACA	4.441e^-5	0.217	UTR_5_PRIME CG9570 INTRON Dop2R	TF binding site mE1_TFBS_chinmo
2R	17893613	2R_17893613_SNP [dm3] 2R_22006108_SNP [dm6]	C	A	4.450e^-5	0.217	INTRON CG34370
X	15578098	X_15578098_SNP [dm3] X_15684065_SNP [dm6]	T	G	4.452e^-5	0.217	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10679759	3L_10679759_SNP [dm3] 3L_10686659_SNP [dm6]	G	T	4.534e^-5	0.22	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13839796	3L_13839796_SNP [dm3] 3L_13846696_SNP [dm6]	T	G	4.550e^-5	0.22	INTRON Hml
3R	24557801	3R_24557801_SNP [dm3] 3R_28732079_SNP [dm6]	G	A	4.554e^-5	0.22	INTRON htt
2L	15211892	2L_15211892_SNP [dm3] 2L_15211892_SNP [dm6]	T	A	4.557e^-5	0.22	INTERGENIC
3L	18213435	3L_18213435_SNP [dm3] 3L_18220335_SNP [dm6]	A	T	4.578e^-5	0.22	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2L	12282953	2L_12282953_DEL [dm3] 2L_12282953_DEL [dm6]	TATAA	T	4.584e^-5	0.22	INTRON aret
X	5683414	X_5683414_SNP [dm3] X_5789381_SNP [dm6]	C	A	4.591e^-5	0.22	UTR_3_PRIME CG42699 UPSTREAM CG15767
2R	9734449	2R_9734449_DEL [dm3] 2R_13846944_DEL [dm6]	TGTCGAT	T	4.599e^-5	0.22	UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl
X	21813713	X_21813713_SNP [dm3] X_22411878_SNP [dm6]	G	C	4.629e^-5	0.22	INTERGENIC	transposable element FlyBase
2L	9320501	2L_9320501_DEL [dm3] 2L_9320501_DEL [dm6]	CCTCTGTTAAGAGTTCAA...	C	4.630e^-5	0.22	INTERGENIC
X	19653387	X_19653387_INS [dm3] X_19759354_INS [dm6]	T	TC	4.664e^-5	0.22	UTR_3_PRIME CG12702 DOWNSTREAM Pmp70
X	12379812	X_12379812_SNP [dm3] X_12485779_SNP [dm6]	C	G	4.670e^-5	0.22	INTERGENIC
X	8264991	X_8264991_MNP [dm3] X_8370958_MNP [dm6]	GCACTA	TAGTGC	4.677e^-5	0.22	INTERGENIC
3L	17537350	3L_17537350_DEL [dm3] 3L_17544250_DEL [dm6]	TT	T	4.695e^-5	0.221	SPLICE_SITE_REGION Nedd4 INTRON Nedd4
2R	4879898	2R_4879898_DEL [dm3] 2R_8992393_DEL [dm6]	AATTCGTGTAA...	A	4.766e^-5	0.223	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15812333	3R_15812333_SNP [dm3] 3R_19986611_SNP [dm6]	A	C	4.784e^-5	0.224	INTRON Hs6st
2R	6175206	2R_6175206_INS [dm3] 2R_10287701_INS [dm6]	A	AA	4.792e^-5	0.224	UPSTREAM CAP INTRON CAP
2R	13020051	2R_13020051_SNP [dm3] 2R_17132546_SNP [dm6]	C	T	4.816e^-5	0.224	UPSTREAM CR45273 & 1 other INTERGENIC
3L	12525909	3L_12525909_SNP [dm3] 3L_12532809_SNP [dm6]	G	T	4.839e^-5	0.225	INTRON Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	14610349	X_14610349_INS [dm3] X_14716316_INS [dm6]	T	TG	4.886e^-5	0.225	INTRON NetB
3R	10484674	3R_10484674_SNP [dm3] 3R_14658952_SNP [dm6]	C	T	4.897e^-5	0.225	SYNONYMOUS_CODING CG3505 UPSTREAM Hexim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5753897	3R_5753897_SNP [dm3] 3R_9928175_SNP [dm6]	T	C	4.911e^-5	0.225	UPSTREAM Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21157605	3R_21157605_SNP [dm3] 3R_25331883_SNP [dm6]	A	G	4.915e^-5	0.225	SYNONYMOUS_CODING CG10669 UPSTREAM CHKov2	TF binding site mE1_TFBS_cad
3R	15675944	3R_15675944_SNP [dm3] 3R_19850222_SNP [dm6]	A	G	4.923e^-5	0.225	SYNONYMOUS_CODING CG4662
2L	20125599	2L_20125599_DEL [dm3] 2L_20125599_DEL [dm6]	TC	T	4.943e^-5	0.225	INTERGENIC
2L	22020172	2L_22020172_INS [dm3] 2L_22020172_INS [dm6]	T	TT	4.946e^-5	0.225	INTRON tio EXON CR33987	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	7326262	2R_7326262_INS [dm3] 2R_11438757_INS [dm6]	G	GG	4.947e^-5	0.225	INTRON CG7777
2R	18130682	2R_18130682_SNP [dm3] 2R_22243177_SNP [dm6]	G	C	4.949e^-5	0.225	UPSTREAM dve INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18127876	2R_18127876_SNP [dm3] 2R_22240371_SNP [dm6]	G	A	4.964e^-5	0.225	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	923648	2L_923648_SNP [dm3] 2L_923648_SNP [dm6]	A	T	4.991e^-5	0.226	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11087462	3L_11087462_SNP [dm3] 3L_11094362_SNP [dm6]	G	A	5.002e^-5	0.226	SPLICE_SITE_REGION CG6279 UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3R	15812336	3R_15812336_SNP [dm3] 3R_19986614_SNP [dm6]	T	C	5.056e^-5	0.227	INTRON Hs6st
2R	1006423	2R_1006423_INS [dm3] 2R_5118918_INS [dm6]	T	TGT	5.107e^-5	0.229	INTRON gus
3L	2405113	3L_2405113_SNP [dm3] 3L_2405113_SNP [dm6]	A	T	5.153e^-5	0.23	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18737959	3R_18737959_SNP [dm3] 3R_22912237_SNP [dm6]	T	C	5.161e^-5	0.23	INTRON klg
3L	15867313	3L_15867313_INS [dm3] 3L_15874213_INS [dm6]	C	CC	5.172e^-5	0.23	INTRON pHCl
2R	17809045	2R_17809045_SNP [dm3] 2R_21921540_SNP [dm6]	G	A	5.198e^-5	0.231	UTR_5_PRIME Fili	TF binding site mE1_TFBS_inv
3R	15884874	3R_15884874_SNP [dm3] 3R_20059152_SNP [dm6]	G	C	5.219e^-5	0.231	UTR_3_PRIME mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1
3L	12069878	3L_12069878_SNP [dm3] 3L_12076778_SNP [dm6]	C	A	5.220e^-5	0.231	INTRON Sema-5c
2R	5714577	2R_5714577_INS [dm3] 2R_9827072_INS [dm6]	G	GTA	5.226e^-5	0.231	FRAME_SHIFT dila INTRON dila	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	13676295	X_13676295_SNP [dm3] X_13782262_SNP [dm6]	A	T	5.244e^-5	0.231	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19145048	2R_19145048_SNP [dm3] 2R_23257525_SNP [dm6]	C	A	5.253e^-5	0.231	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4571522	3R_4571522_DEL [dm3] 3R_8745800_DEL [dm6]	TATTTAAAATAATTGCATTT...	AAA	5.285e^-5	0.232	UPSTREAM CG9801 INTRON CG9801
3L	17023818	3L_17023818_SNP [dm3] 3L_17030718_SNP [dm6]	G	T	5.368e^-5	0.235	SYNONYMOUS_CODING Ilp8 DOWNSTREAM CG7730
3R	15874689	3R_15874689_SNP [dm3] 3R_20048967_SNP [dm6]	G	C	5.377e^-5	0.235	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
3L	8252111	3L_8252111_INS [dm3] 3L_8259011_INS [dm6]	T	TT	5.393e^-5	0.235	INTRON Dscam4
X	14321291	X_14321291_SNP [dm3] X_14427258_SNP [dm6]	C	A	5.405e^-5	0.235	INTRON dpr8
2L	14078383	2L_14078383_SNP [dm3] 2L_14078383_SNP [dm6]	G	A	5.455e^-5	0.236	INTRON nAChRalpha5
3L	4417400	3L_4417400_SNP [dm3] 3L_4417400_SNP [dm6]	A	T	5.458e^-5	0.236	INTRON DOR
2L	12210043	2L_12210043_DEL [dm3] 2L_12210043_DEL [dm6]	AATTCG	A	5.470e^-5	0.236	UTR_3_PRIME CG31759 DOWNSTREAM CG31759 INTRON aret
2L	21263824	2L_21263824_DEL [dm3] 2L_21263824_DEL [dm6]	CCAAA	C	5.517e^-5	0.236	UPSTREAM mir-4974 INTRON CG8671	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1024499	3L_1024499_SNP [dm3] 3L_1024499_SNP [dm6]	G	A	5.522e^-5	0.236	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6692565	X_6692565_DEL [dm3] X_6798532_DEL [dm6]	TAT	T	5.533e^-5	0.236	INTRON C3G
3L	9632105	3L_9632105_DEL [dm3] 3L_9639005_DEL [dm6]	ATATA	A	5.535e^-5	0.236	UTR_3_PRIME CG8329 UPSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6878141	X_6878141_DEL [dm3] X_6984108_DEL [dm6]	AGCTTTAACGTTAT...	A	5.540e^-5	0.236	UTR_5_PRIME ogre INTRON ogre & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16286698	3R_16286698_SNP [dm3] 3R_20460976_SNP [dm6]	G	T	5.560e^-5	0.236	INTRON Gfrl
3R	17299940	3R_17299940_INS [dm3] 3R_21474218_INS [dm6]	T	TACTACTAG	5.563e^-5	0.236	INTERGENIC
X	13221353	X_13221353_DEL [dm3] X_13327320_DEL [dm6]	TT	T	5.576e^-5	0.236	INTRON IP3K2
2L	3678927	2L_3678927_SNP [dm3] 2L_3678927_SNP [dm6]	G	A	5.599e^-5	0.237	INTRON CG34340
3R	10469642	3R_10469642_SNP [dm3] 3R_14643920_SNP [dm6]	T	C	5.636e^-5	0.238	UTR_3_PRIME l_3_L1231 DOWNSTREAM l_3_L1231
3R	19466296	3R_19466296_SNP [dm3] 3R_23640574_SNP [dm6]	C	T	5.649e^-5	0.238	INTRON CG31145
3R	10548806	3R_10548806_SNP [dm3] 3R_14723084_SNP [dm6]	G	T	5.709e^-5	0.238	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	3283305	2L_3283305_SNP [dm3] 2L_3283305_SNP [dm6]	T	C	5.713e^-5	0.238	INTERGENIC	TF binding site mE1_TFBS_inv
2L	919062	2L_919062_INS [dm3] 2L_919062_INS [dm6]	C	CTC	5.714e^-5	0.238	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13676308	X_13676308_SNP [dm3] X_13782275_SNP [dm6]	C	A	5.721e^-5	0.238	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2847935	2R_2847935_DEL [dm3] 2R_6960430_DEL [dm6]	CGCA	C	5.735e^-5	0.238	INTRON mim & 1 other
2R	11397677	2R_11397677_INS [dm3] 2R_15510172_INS [dm6]	T	TAT	5.764e^-5	0.238	INTERGENIC
2R	7201332	2R_7201332_SNP [dm3] 2R_11313827_SNP [dm6]	G	A	5.766e^-5	0.238	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16913902	X_16913902_DEL [dm3] X_17019869_DEL [dm6]	AA	C	5.782e^-5	0.238	INTRON CG45002
3R	4134760	3R_4134760_SNP [dm3] 3R_8309038_SNP [dm6]	A	G	5.807e^-5	0.238	SYNONYMOUS_CODING CG11693 UPSTREAM mir-4918 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	15877888	3R_15877888_SNP [dm3] 3R_20052166_SNP [dm6]	C	G	5.813e^-5	0.238	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2R	7798323	2R_7798323_SNP [dm3] 2R_11910818_SNP [dm6]	T	G	5.820e^-5	0.238	INTRON CG13183
3R	15564387	3R_15564387_SNP [dm3] 3R_19738665_SNP [dm6]	T	C	5.829e^-5	0.238	INTRON GluClalpha
2L	4679586	2L_4679586_SNP [dm3] 2L_4679586_SNP [dm6]	G	C	5.834e^-5	0.238	INTERGENIC
2R	12980692	2R_12980692_SNP [dm3] 2R_17093187_SNP [dm6]	T	C	5.843e^-5	0.238	DOWNSTREAM GstS1 & 1 other INTERGENIC
3R	16232381	3R_16232381_DEL [dm3] 3R_20406659_DEL [dm6]	TC	T	5.858e^-5	0.238	UTR_3_PRIME CG4335 INTRON Gfrl	TF binding site mE1_TFBS_inv
2R	7139613	2R_7139613_SNP [dm3] 2R_11252108_SNP [dm6]	G	A	5.909e^-5	0.239	UTR_3_PRIME Cpr47Ea DOWNSTREAM Or47a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13500120	X_13500120_DEL [dm3] X_13606087_DEL [dm6]	TCGATAATGCCGT...	T	5.910e^-5	0.239	UTR_5_PRIME CG11178 UPSTREAM CG11178 DOWNSTREAM CR44654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	11110060	3L_11110060_SNP [dm3] 3L_11116960_SNP [dm6]	G	T	5.956e^-5	0.241	NON_SYNONYMOUS_CODING fd68A	TF binding site BDTNP1_TFBS_dl
3R	15875755	3R_15875755_SNP [dm3] 3R_20050033_SNP [dm6]	G	A	6.046e^-5	0.243	INTRON CG17193
3R	25519796	3R_25519796_SNP [dm3] 3R_29694074_SNP [dm6]	C	T	6.049e^-5	0.243	INTRON dmrt99B
3L	14908900	3L_14908900_DEL [dm3] 3L_14915800_DEL [dm6]	AA	A	6.064e^-5	0.243	INTRON DCX-EMAP
3R	385292	3R_385292_INS [dm3] 3R_4559570_INS [dm6]	C	CGTATGTATATAC...	6.083e^-5	0.243	INTERGENIC
3L	10415868	3L_10415868_SNP [dm3] 3L_10422768_SNP [dm6]	A	G	6.092e^-5	0.243	INTERGENIC
3L	5185834	3L_5185834_DEL [dm3] 3L_5192734_DEL [dm6]	AA	A	6.098e^-5	0.243	INTRON shep
3L	2866152	3L_2866152_DEL [dm3] 3L_2866152_DEL [dm6]	CC	A	6.107e^-5	0.243	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	17090288	3L_17090288_SNP [dm3] 3L_17097188_SNP [dm6]	G	A	6.128e^-5	0.243	INTRON Rbp6
2L	17194625	2L_17194625_SNP [dm3] 2L_17194625_SNP [dm6]	C	T	6.140e^-5	0.243	INTRON beat-IIIc
3L	18291644	3L_18291644_INS [dm3] 3L_18298544_INS [dm6]	TT	CGAGGGCTAATGGCTCGAAG...	6.181e^-5	0.245	DOWNSTREAM CG13700 INTERGENIC
2R	14147151	2R_14147151_SNP [dm3] 2R_18259646_SNP [dm6]	C	A	6.199e^-5	0.245	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8448274	X_8448274_INS [dm3] X_8554241_INS [dm6]	A	ATAA	6.221e^-5	0.245	UTR_3_PRIME Nrg DOWNSTREAM Nrg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
2L	21197896	2L_21197896_SNP [dm3] 2L_21197896_SNP [dm6]	T	C	6.246e^-5	0.245	INTRON Ret
3R	15891264	3R_15891264_SNP [dm3] 3R_20065542_SNP [dm6]	G	A	6.266e^-5	0.245	INTERGENIC
2R	14762276	2R_14762276_SNP [dm3] 2R_18874771_SNP [dm6]	T	A	6.283e^-5	0.245	INTERGENIC
X	16306790	X_16306790_INS [dm3] X_16412757_INS [dm6]	A	ATCCACATA	6.285e^-5	0.245	INTRON CG4301	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19465071	3R_19465071_SNP [dm3] 3R_23639349_SNP [dm6]	T	A	6.318e^-5	0.245	INTRON CG31145	TF binding site mE1_TFBS_inv
2L	15866651	2L_15866651_INS [dm3] 2L_15866651_INS [dm6]	T	TGAGAGGCTATT...	6.318e^-5	0.245	INTERGENIC
X	3658906	X_3658906_DEL [dm3] X_3764873_DEL [dm6]	AAATTT	A	6.323e^-5	0.245	INTRON tlk
X	19198568	X_19198568_INS [dm3] X_19304535_INS [dm6]	T	TT	6.326e^-5	0.245	INTRON CG8051
3R	14698544	3R_14698544_DEL [dm3] 3R_18872822_DEL [dm6]	CC	C	6.334e^-5	0.245	INTERGENIC
3L	13839804	3L_13839804_DEL [dm3] 3L_13846704_DEL [dm6]	AAGT	CC	6.396e^-5	0.247	INTRON Hml
2R	18125602	2R_18125602_SNP [dm3] 2R_22238097_SNP [dm6]	G	A	6.418e^-5	0.247	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20868496	2R_20868496_DEL [dm3] 2R_24980973_DEL [dm6]	ATAATATAATAATA...	A	6.421e^-5	0.247	INTRON emp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10517231	3L_10517231_SNP [dm3] 3L_10524131_SNP [dm6]	G	A	6.439e^-5	0.247	INTRON A2bp1
3L	2089794	3L_2089794_SNP [dm3] 3L_2089794_SNP [dm6]	C	A	6.459e^-5	0.247	UTR_3_PRIME sls DOWNSTREAM sls & 1 other INTRON sls	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
X	21838572	X_21838572_SNP [dm3] X_22436737_SNP [dm6]	C	T	6.466e^-5	0.247	INTERGENIC
2L	4679653	2L_4679653_SNP [dm3] 2L_4679653_SNP [dm6]	G	A	6.558e^-5	0.249	INTERGENIC
3R	10530161	3R_10530161_DEL [dm3] 3R_14704439_DEL [dm6]	GTCTGTCTGTCTGTTGATTG...	G	6.563e^-5	0.249	INTRON kibra
3L	5857071	3L_5857071_SNP [dm3] 3L_5863971_SNP [dm6]	T	A	6.574e^-5	0.249	INTERGENIC
3R	15344139	3R_15344139_SNP [dm3] 3R_19518417_SNP [dm6]	A	G	6.578e^-5	0.249	INTRON Dys
X	7147585	X_7147585_SNP [dm3] X_7253552_SNP [dm6]	T	C	6.582e^-5	0.249	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3L	15783749	3L_15783749_DEL [dm3] 3L_15790649_DEL [dm6]	AAC	A	6.611e^-5	0.249	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18066920	2R_18066920_DEL [dm3] 2R_22179415_DEL [dm6]	TT	T	6.617e^-5	0.249	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14078435	2L_14078435_SNP [dm3] 2L_14078435_SNP [dm6]	C	A	6.646e^-5	0.249	INTRON nAChRalpha5
3R	26137458	3R_26137458_INS [dm3] 3R_30311736_INS [dm6]	T	TG	6.647e^-5	0.249	INTRON hdc
3L	6441159	3L_6441159_SNP [dm3] 3L_6448059_SNP [dm6]	C	T	6.649e^-5	0.249	INTRON CG42747
2L	2802021	2L_2802021_SNP [dm3] 2L_2802021_SNP [dm6]	C	A	6.651e^-5	0.249	INTERGENIC
3L	5944434	3L_5944434_INS [dm3] 3L_5951334_INS [dm6]	A	AGTTAATTA	6.723e^-5	0.249	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15402378	3L_15402378_SNP [dm3] 3L_15409278_SNP [dm6]	T	A	6.729e^-5	0.249	INTERGENIC
3L	21606710	3L_21606710_DEL [dm3] 3L_21613610_DEL [dm6]	TCTC	T	6.748e^-5	0.249	DOWNSTREAM S1P & 1 other INTERGENIC
2L	7933128	2L_7933128_SNP [dm3] 2L_7933128_SNP [dm6]	C	T	6.750e^-5	0.249	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	765916	2R_765916_DEL [dm3] 2R_4878411_DEL [dm6]	AGA	A	6.756e^-5	0.249	INTERGENIC
3L	19482798	3L_19482798_DEL [dm3] 3L_19489698_DEL [dm6]	AGGTTA	A	6.760e^-5	0.249	INTERGENIC
3R	15895164	3R_15895164_SNP [dm3] 3R_20069442_SNP [dm6]	C	A	6.784e^-5	0.249	INTERGENIC
2R	13881626	2R_13881626_SNP [dm3] 2R_17994121_SNP [dm6]	A	T	6.809e^-5	0.249	INTRON dpr13
2L	7117805	2L_7117805_SNP [dm3] 2L_7117805_SNP [dm6]	A	G	6.817e^-5	0.249	INTRON Pvf3
3R	11955920	3R_11955920_SNP [dm3] 3R_16130198_SNP [dm6]	A	C	6.820e^-5	0.249	INTRON Sb
2L	19549387	2L_19549387_INS [dm3] 2L_19549387_INS [dm6]	T	TGAAT	6.820e^-5	0.249	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3R	15812356	3R_15812356_SNP [dm3] 3R_19986634_SNP [dm6]	T	G	6.823e^-5	0.249	INTRON Hs6st
3L	855536	3L_855536_DEL [dm3] 3L_855536_DEL [dm6]	AGTCATCGCA	A	6.838e^-5	0.249	INTRON dpr20
3R	13144288	3R_13144288_SNP [dm3] 3R_17318566_SNP [dm6]	C	T	6.847e^-5	0.249	INTERGENIC
X	2459064	X_2459064_INS [dm3] X_2565031_INS [dm6]	A	ACATA	6.871e^-5	0.249	INTRON Pdfr
2R	8086475	2R_8086475_INS [dm3] 2R_12198970_INS [dm6]	A	ATTC	6.900e^-5	0.249	UPSTREAM CG8858 DOWNSTREAM RpS11 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14743150	3L_14743150_DEL [dm3] 3L_14750050_DEL [dm6]	AA	A	6.905e^-5	0.249	DOWNSTREAM Trl INTRON Trl & 1 other
2L	13926393	2L_13926393_INS [dm3] 2L_13926393_INS [dm6]	A	AA	6.914e^-5	0.249	INTRON Ance-3
2L	8861897	2L_8861897_INS [dm3] 2L_8861897_INS [dm6]	T	TG	6.940e^-5	0.25	UPSTREAM CG32986 DOWNSTREAM CR45260 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4927314	X_4927314_INS [dm3] X_5033281_INS [dm6]	T	TT	6.955e^-5	0.25	INTRON CR44833
3L	14670092	3L_14670092_SNP [dm3] 3L_14676992_SNP [dm6]	A	G	6.966e^-5	0.25	INTRON ome & 1 other
3L	15402382	3L_15402382_SNP [dm3] 3L_15409282_SNP [dm6]	G	A	6.999e^-5	0.25	INTERGENIC
3R	17345560	3R_17345560_DEL [dm3] 3R_21519838_DEL [dm6]	TAGA	T	7.011e^-5	0.25	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	423812	3L_423812_SNP [dm3] 3L_423812_SNP [dm6]	G	A	7.025e^-5	0.25	INTERGENIC
3R	15159912	3R_15159912_SNP [dm3] 3R_19334190_SNP [dm6]	C	A	7.031e^-5	0.25	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25487079	3R_25487079_DEL [dm3] 3R_29661357_DEL [dm6]	CG	C	7.045e^-5	0.25	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10063117	2R_10063117_SNP [dm3] 2R_14175612_SNP [dm6]	G	A	7.053e^-5	0.25	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25519572	3R_25519572_SNP [dm3] 3R_29693850_SNP [dm6]	A	G	7.086e^-5	0.251	INTRON dmrt99B	TF binding site mE1_TFBS_chinmo
X	17635424	X_17635424_DEL [dm3] X_17741391_DEL [dm6]	TGGGTATCGAAAGCGAATCC...	T	7.122e^-5	0.252	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4687976	2L_4687976_SNP [dm3] 2L_4687976_SNP [dm6]	G	A	7.154e^-5	0.252	NON_SYNONYMOUS_CODING Elba3 DOWNSTREAM CG11929 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14541307	3R_14541307_SNP [dm3] 3R_18715585_SNP [dm6]	C	T	7.196e^-5	0.253	UTR_3_PRIME VAChT INTRON Cha
3R	15489993	3R_15489993_SNP [dm3] 3R_19664271_SNP [dm6]	C	A	7.211e^-5	0.253	UPSTREAM CG7432 DOWNSTREAM ort INTERGENIC
X	15578013	X_15578013_SNP [dm3] X_15683980_SNP [dm6]	C	T	7.228e^-5	0.253	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19750711	3R_19750711_INS [dm3] 3R_23924989_INS [dm6]	C	CC	7.235e^-5	0.253	DOWNSTREAM CG31141 INTRON Ndc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13186655	3L_13186655_SNP [dm3] 3L_13193555_SNP [dm6]	A	C	7.275e^-5	0.253	INTERGENIC
2R	10857353	2R_10857353_SNP [dm3] 2R_14969848_SNP [dm6]	G	A	7.289e^-5	0.253	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	16807416	3L_16807416_SNP [dm3] 3L_16814316_SNP [dm6]	T	A	7.301e^-5	0.253	INTRON nudC & 1 other
X	22326492	X_22326492_DEL [dm3] X_22924656_DEL [dm6]	AA	A	7.314e^-5	0.253	INTERGENIC
3R	15874695	3R_15874695_SNP [dm3] 3R_20048973_SNP [dm6]	G	A	7.317e^-5	0.253	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
2R	1329977	2R_1329977_SNP [dm3] 2R_5442472_SNP [dm6]	T	A	7.318e^-5	0.253	INTRON laccase2	transposable element FlyBase
3L	4235264	3L_4235264_INS [dm3] 3L_4235264_INS [dm6]	T	TA	7.347e^-5	0.253	INTRON ImpL2
2R	1149738	2R_1149738_DEL [dm3] 2R_5262233_DEL [dm6]	CT	C	7.349e^-5	0.253	INTRON d4	transposable element FlyBase
3L	4542317	3L_4542317_SNP [dm3] 3L_4542317_SNP [dm6]	A	G	7.351e^-5	0.253	UTR_5_PRIME CG11357 INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	768190	3L_768190_DEL [dm3] 3L_768190_DEL [dm6]	GC	G	7.370e^-5	0.253	INTERGENIC
3R	15892624	3R_15892624_DEL [dm3] 3R_20066902_DEL [dm6]	TG	T	7.386e^-5	0.253	INTERGENIC
2L	17194108	2L_17194108_SNP [dm3] 2L_17194108_SNP [dm6]	G	A	7.442e^-5	0.254	INTRON beat-IIIc
3L	17744251	3L_17744251_SNP [dm3] 3L_17751151_SNP [dm6]	C	T	7.462e^-5	0.254	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3R	15878285	3R_15878285_SNP [dm3] 3R_20052563_SNP [dm6]	G	A	7.463e^-5	0.254	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	4417389	3L_4417389_SNP [dm3] 3L_4417389_SNP [dm6]	G	A	7.498e^-5	0.254	INTRON DOR
2R	16580600	2R_16580600_DEL [dm3] 2R_20693095_DEL [dm6]	ATTCTGC	A	7.544e^-5	0.254	DOWNSTREAM CR44659
X	20764616	X_20764616_INS [dm3] X_20893589_INS [dm6]	A	AAA	7.566e^-5	0.254	INTRON shakB
2R	9148600	2R_9148600_SNP [dm3] 2R_13261095_SNP [dm6]	C	G	7.567e^-5	0.254	INTRON CG42319
3R	15564564	3R_15564564_SNP [dm3] 3R_19738842_SNP [dm6]	C	T	7.568e^-5	0.254	INTRON GluClalpha
2L	12308165	2L_12308165_SNP [dm3] 2L_12308165_SNP [dm6]	T	C	7.577e^-5	0.254	INTRON aret
3L	7044969	3L_7044969_SNP [dm3] 3L_7051869_SNP [dm6]	G	C	7.592e^-5	0.254	INTRON Mp
3R	8531766	3R_8531766_SNP [dm3] 3R_12706044_SNP [dm6]	A	G	7.607e^-5	0.254	SPLICE_SITE_REGION mus308 DOWNSTREAM CG12279 INTRON mus308	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	21262377	X_21262377_DEL [dm3] X_21391350_DEL [dm6]	AAACAA	A	7.610e^-5	0.254	UTR_3_PRIME mst DOWNSTREAM mst
3L	14386254	3L_14386254_SNP [dm3] 3L_14393154_SNP [dm6]	A	T	7.611e^-5	0.254	INTERGENIC
3L	12321291	3L_12321291_DEL [dm3] 3L_12328191_DEL [dm6]	AATACTA	A	7.621e^-5	0.254	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11170561	X_11170561_DEL [dm3] X_11276528_DEL [dm6]	ATAGTGTAAGAGTTATTTTC...	A	7.622e^-5	0.254	INTRON CG44422	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	26980860	3R_26980860_DEL [dm3] 3R_31155138_DEL [dm6]	AGAGCAAACTTCACGTTTAG...	A	7.632e^-5	0.254	INTRON Gycbeta100B
X	20659582	X_20659582_INS [dm3] X_20788555_INS [dm6]	T	TCCCT	7.663e^-5	0.254	UPSTREAM shakB INTRON shakB
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	7.663e^-5	0.254	INTRON Doa
3R	10628371	3R_10628371_SNP [dm3] 3R_14802649_SNP [dm6]	A	T	7.683e^-5	0.254	INTRON CG14857
2R	10063870	2R_10063870_SNP [dm3] 2R_14176365_SNP [dm6]	T	G	7.702e^-5	0.254	INTRON cg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	5422938	X_5422938_SNP [dm3] X_5528905_SNP [dm6]	T	G	7.704e^-5	0.254	DOWNSTREAM Vsx2 INTERGENIC
3L	10859766	3L_10859766_SNP [dm3] 3L_10866666_SNP [dm6]	G	A	7.708e^-5	0.254	INTRON tna
3R	15081396	3R_15081396_SNP [dm3] 3R_19255674_SNP [dm6]	T	A	7.733e^-5	0.254	INTERGENIC
2L	8111870	2L_8111870_SNP [dm3] 2L_8111870_SNP [dm6]	T	C	7.737e^-5	0.254	UTR_3_PRIME Bsg
3R	22671449	3R_22671449_SNP [dm3] 3R_26845727_SNP [dm6]	A	C	7.752e^-5	0.254	INTRON Lerp
3R	15888127	3R_15888127_SNP [dm3] 3R_20062405_SNP [dm6]	G	A	7.759e^-5	0.254	INTERGENIC
3R	7007117	3R_7007117_SNP [dm3] 3R_11181395_SNP [dm6]	T	A	7.766e^-5	0.254	INTERGENIC
X	9702205	X_9702205_DEL [dm3] X_9808172_DEL [dm6]	AT	A	7.772e^-5	0.254	INTRON CG32698
2L	12301410	2L_12301410_SNP [dm3] 2L_12301410_SNP [dm6]	A	T	7.821e^-5	0.255	INTRON aret
2R	1689055	2R_1689055_DEL [dm3] 2R_5801550_DEL [dm6]	TATGTACATATGTGTATGT...	T	7.834e^-5	0.255	INTERGENIC
X	3665290	X_3665290_INS [dm3] X_3771257_INS [dm6]	A	ATTCA	7.899e^-5	0.255	INTRON tlk	TF binding site BDTNP1_TFBS_dl
2L	15091274	2L_15091274_DEL [dm3] 2L_15091274_DEL [dm6]	TAGCTCTT	T	7.899e^-5	0.255	INTRON CG15270
3R	15875906	3R_15875906_SNP [dm3] 3R_20050184_SNP [dm6]	G	A	7.917e^-5	0.255	INTRON CG17193
2L	4599708	2L_4599708_DEL [dm3] 2L_4599708_DEL [dm6]	ACGAAGGCAGGCTACCTAT...	C	7.919e^-5	0.255	INTRON dp
2L	4680554	2L_4680554_SNP [dm3] 2L_4680554_SNP [dm6]	G	C	7.922e^-5	0.255	INTERGENIC
3L	4049219	3L_4049219_SNP [dm3] 3L_4049219_SNP [dm6]	T	A	7.977e^-5	0.255	INTRON CG1136
2R	17911893	2R_17911893_SNP [dm3] 2R_22024388_SNP [dm6]	G	T	7.978e^-5	0.255	INTRON CG34370
2L	6322899	2L_6322899_SNP [dm3] 2L_6322899_SNP [dm6]	A	G	7.978e^-5	0.255	UTR_3_PRIME Ddr UPSTREAM PDZ-GEF
2R	13815164	2R_13815164_SNP [dm3] 2R_17927659_SNP [dm6]	G	T	7.978e^-5	0.255	DOWNSTREAM Elk INTERGENIC
X	789165	X_789165_DEL [dm3] X_895132_DEL [dm6]	TA	T	7.980e^-5	0.255	UTR_3_PRIME CG11663 INTRON CG43867
2L	20868588	2L_20868588_SNP [dm3] 2L_20868588_SNP [dm6]	G	A	8.003e^-5	0.255	DOWNSTREAM CG9338 INTRON CG31675
3L	14378232	3L_14378232_DEL [dm3] 3L_14385132_DEL [dm6]	GAACTTCGATTTTAAGGGG...	G	8.028e^-5	0.256	INTERGENIC
2L	8561271	2L_8561271_SNP [dm3] 2L_8561271_SNP [dm6]	C	T	8.039e^-5	0.256	INTRON Sema-1a
2L	14968272	2L_14968272_DEL [dm3] 2L_14968272_DEL [dm6]	TCTT	T	8.068e^-5	0.256	INTRON CG42313
3R	13724636	3R_13724636_SNP [dm3] 3R_17898914_SNP [dm6]	T	A	8.078e^-5	0.256	INTRON Rim
3L	16807371	3L_16807371_SNP [dm3] 3L_16814271_SNP [dm6]	G	T	8.091e^-5	0.256	INTRON nudC & 1 other
3L	11237703	3L_11237703_SNP [dm3] 3L_11244603_SNP [dm6]	A	G	8.106e^-5	0.256	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	568162	2L_568162_INS [dm3] 2L_568162_INS [dm6]	T	TTTACTTAAGAA...	8.148e^-5	0.256	UPSTREAM CG2807 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17920666	2R_17920666_SNP [dm3] 2R_22033161_SNP [dm6]	T	C	8.153e^-5	0.256	INTRON CG34370
X	3665462	X_3665462_SNP [dm3] X_3771429_SNP [dm6]	T	C	8.159e^-5	0.256	INTRON tlk
2L	17194504	2L_17194504_SNP [dm3] 2L_17194504_SNP [dm6]	C	A	8.183e^-5	0.257	INTRON beat-IIIc
X	20521782	X_20521782_DEL [dm3] X_20650755_DEL [dm6]	GG	G	8.208e^-5	0.257	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15884245	3R_15884245_SNP [dm3] 3R_20058523_SNP [dm6]	G	A	8.234e^-5	0.257	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	15742143	X_15742143_DEL [dm3] X_15848110_DEL [dm6]	AT	C	8.282e^-5	0.258	DOWNSTREAM CG8578 INTRON sun
2L	10817533	2L_10817533_SNP [dm3] 2L_10817533_SNP [dm6]	A	G	8.318e^-5	0.259	INTRON Nos
3R	15246068	3R_15246068_DEL [dm3] 3R_19420346_DEL [dm6]	AAAA	A	8.347e^-5	0.26	INTRON CG31221
2L	309609	2L_309609_SNP [dm3] 2L_309609_SNP [dm6]	A	G	8.403e^-5	0.261	UPSTREAM Plc21C & 1 other INTRON Plc21C	TF binding site BDTNP1_TFBS_dl
3R	16840364	3R_16840364_INS [dm3] 3R_21014642_INS [dm6]	A	AA	8.434e^-5	0.261	UTR_3_PRIME Calx DOWNSTREAM Calx
4	1174442	4_1174442_DEL [dm3] 4_1153816_DEL [dm6]	AGAGTGAAAGCA...	A	8.435e^-5	0.261	INTRON CG32017 & 1 other	transposable element FlyBase
2R	10051285	2R_10051285_SNP [dm3] 2R_14163780_SNP [dm6]	C	G	8.437e^-5	0.261	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18059962	2R_18059962_DEL [dm3] 2R_22172457_DEL [dm6]	TATT	T	8.472e^-5	0.261	DOWNSTREAM CG3045 INTRON a
3L	2405119	3L_2405119_SNP [dm3] 3L_2405119_SNP [dm6]	G	A	8.486e^-5	0.261	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10531114	3L_10531114_INS [dm3] 3L_10538014_INS [dm6]	T	TCT	8.496e^-5	0.261	INTRON A2bp1
3R	25487368	3R_25487368_SNP [dm3] 3R_29661646_SNP [dm6]	T	A	8.521e^-5	0.262	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14296654	3L_14296654_SNP [dm3] 3L_14303554_SNP [dm6]	T	A	8.563e^-5	0.262	INTRON fz
2L	12275284	2L_12275284_INS [dm3] 2L_12275284_INS [dm6]	A	AAAA	8.595e^-5	0.263	INTRON aret
2R	15396223	2R_15396223_SNP [dm3] 2R_19508718_SNP [dm6]	A	C	8.620e^-5	0.263	SYNONYMOUS_CODING Ir56b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9552543	3R_9552543_DEL [dm3] 3R_13726821_DEL [dm6]	TAAATG	T	8.626e^-5	0.263	INTRON CG34383
3R	15108762	3R_15108762_SNP [dm3] 3R_19283040_SNP [dm6]	G	T	8.629e^-5	0.263	INTERGENIC
3L	10253079	3L_10253079_SNP [dm3] 3L_10259979_SNP [dm6]	G	A	8.646e^-5	0.263	INTERGENIC
3R	8920877	3R_8920877_SNP [dm3] 3R_13095155_SNP [dm6]	C	T	8.692e^-5	0.263	INTRON timeout
3L	14219511	3L_14219511_INS [dm3] 3L_14226411_INS [dm6]	G	GAG	8.694e^-5	0.263	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	12289242	2L_12289242_SNP [dm3] 2L_12289242_SNP [dm6]	T	C	8.724e^-5	0.264	UTR_5_PRIME aret INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10140699	3R_10140699_SNP [dm3] 3R_14314977_SNP [dm6]	C	T	8.740e^-5	0.264	SYNONYMOUS_CODING Crz DOWNSTREAM CG31321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17369171	3L_17369171_INS [dm3] 3L_17376071_INS [dm6]	A	AAATC	8.753e^-5	0.264	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23410659	3R_23410659_SNP [dm3] 3R_27584937_SNP [dm6]	A	T	8.809e^-5	0.265	NON_SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_chinmo
3R	15881347	3R_15881347_SNP [dm3] 3R_20055625_SNP [dm6]	G	C	8.824e^-5	0.265	DOWNSTREAM CG4390 INTRON CG17193
3L	5717361	3L_5717361_DEL [dm3] 3L_5724261_DEL [dm6]	TT	T	8.853e^-5	0.265	INTRON sif
3R	15895306	3R_15895306_INS [dm3] 3R_20069584_INS [dm6]	T	TTTCTTGGCT	8.853e^-5	0.265	INTERGENIC
3R	15241941	3R_15241941_SNP [dm3] 3R_19416219_SNP [dm6]	A	C	8.858e^-5	0.265	SYNONYMOUS_CODING CG31221
2R	9387828	2R_9387828_SNP [dm3] 2R_13500323_SNP [dm6]	G	A	8.867e^-5	0.265	UPSTREAM mars INTRON drk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19805947	3L_19805947_SNP [dm3] 3L_19812847_SNP [dm6]	C	T	8.922e^-5	0.266	DOWNSTREAM cyc INTRON Cyp305a1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14846877	2L_14846877_SNP [dm3] 2L_14846877_SNP [dm6]	T	C	8.930e^-5	0.266	NON_SYNONYMOUS_CODING CG15279 INTRON CG15279
3L	10161434	3L_10161434_SNP [dm3] 3L_10168334_SNP [dm6]	A	G	8.940e^-5	0.266	INTRON dpr10
3L	15272127	3L_15272127_SNP [dm3] 3L_15279027_SNP [dm6]	T	G	8.996e^-5	0.266	INTERGENIC
2R	7084996	2R_7084996_DEL [dm3] 2R_11197491_DEL [dm6]	TATTCTT	T	8.997e^-5	0.266	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	13643345	2L_13643345_SNP [dm3] 2L_13643345_SNP [dm6]	T	C	9.027e^-5	0.266	UPSTREAM ics DOWNSTREAM CR44726 INTERGENIC
2L	3390792	2L_3390792_INS [dm3] 2L_3390792_INS [dm6]	G	GG	9.036e^-5	0.266	INTERGENIC
2R	7125274	2R_7125274_DEL [dm3] 2R_11237769_DEL [dm6]	CTC	T	9.036e^-5	0.266	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2987649	2R_2987649_DEL [dm3] 2R_7100144_DEL [dm6]	CAACTAC	C	9.049e^-5	0.266	INTRON esn
3L	14868690	3L_14868690_SNP [dm3] 3L_14875590_SNP [dm6]	T	G	9.097e^-5	0.267	INTRON CG17839
3R	15512379	3R_15512379_INS [dm3] 3R_19686657_INS [dm6]	A	AA	9.121e^-5	0.267	UPSTREAM Naam INTRON Naam
3R	15888947	3R_15888947_SNP [dm3] 3R_20063225_SNP [dm6]	C	T	9.123e^-5	0.267	INTERGENIC
2R	18059760	2R_18059760_SNP [dm3] 2R_22172255_SNP [dm6]	A	G	9.132e^-5	0.267	SPLICE_SITE_REGION a DOWNSTREAM CG3045 INTRON a
2L	10510871	2L_10510871_SNP [dm3] 2L_10510871_SNP [dm6]	G	A	9.163e^-5	0.267	UTR_3_PRIME Fatp & 1 other UPSTREAM CG7384 DOWNSTREAM Fatp & 1 other
3L	17537339	3L_17537339_SNP [dm3] 3L_17544239_SNP [dm6]	T	A	9.184e^-5	0.267	INTRON Nedd4
3R	25323609	3R_25323609_SNP [dm3] 3R_29497887_SNP [dm6]	A	C	9.190e^-5	0.267	NON_SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14617502	2R_14617502_SNP [dm3] 2R_18729997_SNP [dm6]	G	A	9.190e^-5	0.267	SYNONYMOUS_CODING List INTRON Hs3st-A
3L	11510556	3L_11510556_DEL [dm3] 3L_11517456_DEL [dm6]	TGTTTT	T	9.192e^-5	0.267	INTRON CG7512	TF binding site BDTNP1_TFBS_sna
2R	18124891	2R_18124891_DEL [dm3] 2R_22237386_DEL [dm6]	CAGCCC	C	9.210e^-5	0.267	UPSTREAM CR44755 INTERGENIC	TF binding site mE1_TFBS_sens
2L	16545166	2L_16545166_DEL [dm3] 2L_16545166_DEL [dm6]	CCGTTTAT	C	9.230e^-5	0.267	UTR_5_PRIME CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16626348	2R_16626348_SNP [dm3] 2R_20738843_SNP [dm6]	T	C	9.247e^-5	0.267	INTRON dpr
3R	14543660	3R_14543660_SNP [dm3] 3R_18717938_SNP [dm6]	A	G	9.254e^-5	0.267	UTR_3_PRIME VAChT INTRON Cha
3L	15454131	3L_15454131_INS [dm3] 3L_15461031_INS [dm6]	G	GCAG	9.274e^-5	0.267	INTERGENIC
X	10259321	X_10259321_SNP [dm3] X_10365288_SNP [dm6]	T	G	9.280e^-5	0.267	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21012191	2L_21012191_SNP [dm3] 2L_21012191_SNP [dm6]	T	A	9.298e^-5	0.267	INTRON CG42238
2R	10552688	2R_10552688_SNP [dm3] 2R_14665183_SNP [dm6]	G	A	9.314e^-5	0.267	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
2L	8748745	2L_8748745_INS [dm3] 2L_8748745_INS [dm6]	G	GCAAT	9.345e^-5	0.268	INTERGENIC
2R	14238949	2R_14238949_INS [dm3] 2R_18351444_INS [dm6]	T	TT	9.382e^-5	0.268	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	95159	3L_95159_MNP [dm3] 3L_95159_MNP [dm6]	GCC	AAT	9.395e^-5	0.268	INTERGENIC
3L	10679656	3L_10679656_DEL [dm3] 3L_10686556_DEL [dm6]	GCATTGGTG	G	9.404e^-5	0.268	INTRON simj	TF binding site BDTNP1_TFBS_dl
2R	18129422	2R_18129422_SNP [dm3] 2R_22241917_SNP [dm6]	A	G	9.404e^-5	0.268	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
2R	10063372	2R_10063372_SNP [dm3] 2R_14175867_SNP [dm6]	G	T	9.469e^-5	0.269	INTRON cg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3R	22034502	3R_22034502_SNP [dm3] 3R_26208780_SNP [dm6]	A	G	9.477e^-5	0.269	INTRON CR44320
3R	19974640	3R_19974640_SNP [dm3] 3R_24148918_SNP [dm6]	T	C	9.502e^-5	0.269	UTR_5_PRIME Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	6309922	3L_6309922_DEL [dm3] 3L_6316822_DEL [dm6]	CTTATAGGAAAC...	C	9.511e^-5	0.269	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	5003702	2L_5003702_DEL [dm3] 2L_5003702_DEL [dm6]	ATGTA	A	9.604e^-5	0.271	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2L	8113257	2L_8113257_SNP [dm3] 2L_8113257_SNP [dm6]	A	C	9.650e^-5	0.272	UTR_3_PRIME Bsg
2L	12209853	2L_12209853_SNP [dm3] 2L_12209853_SNP [dm6]	T	A	9.654e^-5	0.272	SYNONYMOUS_CODING CG31759 INTRON aret
2L	9918493	2L_9918493_DEL [dm3] 2L_9918493_DEL [dm6]	GGCTTACTGGG...	AACTACC	9.677e^-5	0.272	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11252641	X_11252641_INS [dm3] X_11358608_INS [dm6]	G	GTGTTTGAGTGCAGGAACG...	9.697e^-5	0.272	UTR_3_PRIME dsh UPSTREAM Pa1	TF binding site BDTNP1_TFBS_dl
3R	15882815	3R_15882815_SNP [dm3] 3R_20057093_SNP [dm6]	G	A	9.711e^-5	0.272	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10412325	3L_10412325_SNP [dm3] 3L_10419225_SNP [dm6]	A	C	9.744e^-5	0.273	INTERGENIC
2L	2869563	2L_2869563_DEL [dm3] 2L_2869563_DEL [dm6]	AA	G	9.768e^-5	0.273	UPSTREAM CG8813 INTRON CG31694	TF binding site mE1_TFBS_cad
2R	16546402	2R_16546402_SNP [dm3] 2R_20658897_SNP [dm6]	G	A	9.798e^-5	0.273	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211 DOWNSTREAM tRNA:CR30155	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6936074	X_6936074_SNP [dm3] X_7042041_SNP [dm6]	C	T	9.804e^-5	0.273	DOWNSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	15877860	3R_15877860_SNP [dm3] 3R_20052138_SNP [dm6]	C	A	9.804e^-5	0.273	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	7249886	X_7249886_DEL [dm3] X_7355853_DEL [dm6]	AGGA	A	9.834e^-5	0.273	INTRON CR44357 & 1 other
3R	24803915	3R_24803915_SNP [dm3] 3R_28978193_SNP [dm6]	T	C	9.850e^-5	0.273	INTERGENIC
X	6650563	X_6650563_SNP [dm3] X_6756530_SNP [dm6]	C	A	9.862e^-5	0.273	UTR_5_PRIME CG14438 DOWNSTREAM CG14439	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11007794	3L_11007794_DEL [dm3] 3L_11014694_DEL [dm6]	TCTTTACATGTTTCTT...	T	9.872e^-5	0.273	INTERGENIC
3L	18320681	3L_18320681_SNP [dm3] 3L_18327581_SNP [dm6]	T	G	9.888e^-5	0.273	INTERGENIC
2R	18552799	2R_18552799_DEL [dm3] 2R_22665294_DEL [dm6]	GTGTT	G	9.942e^-5	0.274	UPSTREAM CG42867 DOWNSTREAM CG4250 & 1 other INTERGENIC
2L	9040934	2L_9040934_DEL [dm3] 2L_9040934_DEL [dm6]	GAGTAAAA	G	9.962e^-5	0.274	INTERGENIC
3L	10567299	3L_10567299_SNP [dm3] 3L_10574199_SNP [dm6]	C	A	1.001e^-4	0.275	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
2R	16122300	2R_16122300_SNP [dm3] 2R_20234795_SNP [dm6]	G	A	1.006e^-4	0.276	NON_SYNONYMOUS_CODING CG11044 UPSTREAM CG44624 & 1 other
X	13676346	X_13676346_SNP [dm3] X_13782313_SNP [dm6]	C	T	1.008e^-4	0.276	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18434597	X_18434597_DEL [dm3] X_18540564_DEL [dm6]	TT	T	1.008e^-4	0.276	INTRON Bx
3R	17827272	3R_17827272_SNP [dm3] 3R_22001550_SNP [dm6]	T	C	1.010e^-4	0.276	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17542150	3R_17542150_INS [dm3] 3R_21716428_INS [dm6]	C	CATAC	1.013e^-4	0.276	INTRON CG31176
2R	16545958	2R_16545958_SNP [dm3] 2R_20658453_SNP [dm6]	G	A	1.015e^-4	0.276	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211 DOWNSTREAM tRNA:CR30155
2R	9312366	2R_9312366_DEL [dm3] 2R_13424861_DEL [dm6]	CA	G	1.015e^-4	0.276	UPSTREAM CG42321 INTRON CG42321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18460017	2R_18460017_INS [dm3] 2R_22572512_INS [dm6]	C	CC	1.016e^-4	0.276	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11368736	X_11368736_SNP [dm3] X_11474703_SNP [dm6]	G	A	1.024e^-4	0.277	INTRON CG43155
3L	18503519	3L_18503519_INS [dm3] 3L_18510419_INS [dm6]	G	GGGT	1.025e^-4	0.277	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	14644126	3L_14644126_SNP [dm3] 3L_14651026_SNP [dm6]	A	T	1.025e^-4	0.277	INTRON dlp	TF binding site mE1_TFBS_cnc
3L	3013639	3L_3013639_SNP [dm3] 3L_3013639_SNP [dm6]	T	G	1.026e^-4	0.277	INTERGENIC
3L	13962310	3L_13962310_SNP [dm3] 3L_13969210_SNP [dm6]	T	G	1.028e^-4	0.277	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3L	6898721	3L_6898721_DEL [dm3] 3L_6905621_DEL [dm6]	TCCCGACT	T	1.031e^-4	0.277	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	604949	3L_604949_INS [dm3] 3L_604949_INS [dm6]	T	TTGGT	1.032e^-4	0.277	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	19818804	3R_19818804_INS [dm3] 3R_23993082_INS [dm6]	T	TT	1.033e^-4	0.277	UTR_5_PRIME Rab7 UPSTREAM Rab7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	2112108	2R_2112108_SNP [dm3] 2R_6224603_SNP [dm6]	A	G	1.035e^-4	0.277	INTRON bin3	TF binding site BDTNP1_TFBS_hb
X	10176571	X_10176571_SNP [dm3] X_10282538_SNP [dm6]	C	T	1.035e^-4	0.277	INTRON alpha-Man-I
2L	17665018	2L_17665018_DEL [dm3] 2L_17665018_DEL [dm6]	ACCCCA	A	1.035e^-4	0.277	INTRON CadN
3L	2954183	3L_2954183_SNP [dm3] 3L_2954183_SNP [dm6]	A	T	1.036e^-4	0.277	DOWNSTREAM Shab INTRON Shab
X	15501969	X_15501969_SNP [dm3] X_15607936_SNP [dm6]	C	T	1.037e^-4	0.277	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5188497	2R_5188497_DEL [dm3] 2R_9300992_DEL [dm6]	TATT	T	1.038e^-4	0.277	UTR_3_PRIME Drep-2
2R	19460339	2R_19460339_INS [dm3] 2R_23572816_INS [dm6]	A	AA	1.040e^-4	0.277	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_Trl
3R	8532125	3R_8532125_SNP [dm3] 3R_12706403_SNP [dm6]	A	C	1.044e^-4	0.277	SYNONYMOUS_CODING mus308 DOWNSTREAM CG12279	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10063511	2R_10063511_SNP [dm3] 2R_14176006_SNP [dm6]	A	G	1.051e^-4	0.278	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26269112	3R_26269112_SNP [dm3] 3R_30443390_SNP [dm6]	T	A	1.051e^-4	0.278	UTR_5_PRIME CG15537 DOWNSTREAM Osi23
3L	21154067	3L_21154067_SNP [dm3] 3L_21160967_SNP [dm6]	C	T	1.055e^-4	0.279	UTR_5_PRIME Ac78C
2L	426698	2L_426698_SNP [dm3] 2L_426698_SNP [dm6]	G	A	1.056e^-4	0.279	INTERGENIC
2R	17247948	2R_17247948_DEL [dm3] 2R_21360443_DEL [dm6]	AA	A	1.059e^-4	0.279	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10063618	2R_10063618_SNP [dm3] 2R_14176113_SNP [dm6]	G	T	1.065e^-4	0.28	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	594329	3L_594329_INS [dm3] 3L_594329_INS [dm6]	G	GACTTA	1.066e^-4	0.28	INTRON MED14	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11955907	3R_11955907_SNP [dm3] 3R_16130185_SNP [dm6]	T	C	1.066e^-4	0.28	INTRON Sb
3R	15166684	3R_15166684_DEL [dm3] 3R_19340962_DEL [dm6]	CCTTGGTC	C	1.066e^-4	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	14260612	X_14260612_DEL [dm3] X_14366579_DEL [dm6]	TGA	T	1.068e^-4	0.28	INTRON dpr8
3R	15023682	3R_15023682_DEL [dm3] 3R_19197960_DEL [dm6]	TT	T	1.071e^-4	0.28	INTRON CG31475
X	13676350	X_13676350_SNP [dm3] X_13782317_SNP [dm6]	T	C	1.073e^-4	0.28	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	24169589	3L_24169589_SNP [dm3] 3L_24176489_SNP [dm6]	T	C	1.075e^-4	0.28	INTRON Snap25
3R	25487309	3R_25487309_DEL [dm3] 3R_29661587_DEL [dm6]	ATCTATTTGCTA...	A	1.076e^-4	0.28	INTERGENIC
2R	9648287	2R_9648287_SNP [dm3] 2R_13760782_SNP [dm6]	A	G	1.079e^-4	0.281	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2852683	2L_2852683_SNP [dm3] 2L_2852683_SNP [dm6]	G	A	1.080e^-4	0.281	INTRON CG3104
3L	18552944	3L_18552944_DEL [dm3] 3L_18559844_DEL [dm6]	ACTTTG	A	1.083e^-4	0.281	UPSTREAM AstC-R1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3920530	X_3920530_DEL [dm3] X_4026497_DEL [dm6]	GAAG	G	1.085e^-4	0.281	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	14482626	X_14482626_DEL [dm3] X_14588593_DEL [dm6]	GG	G	1.087e^-4	0.281	INTRON CG9413
X	5683407	X_5683407_SNP [dm3] X_5789374_SNP [dm6]	C	A	1.088e^-4	0.281	UTR_3_PRIME CG42699 UPSTREAM CG15767
2R	1242672	2R_1242672_SNP [dm3] 2R_5355167_SNP [dm6]	A	T	1.099e^-4	0.282	DOWNSTREAM CG10396 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16242189	3R_16242189_INS [dm3] 3R_20416467_INS [dm6]	C	CG	1.099e^-4	0.282	INTRON Gfrl
X	10087262	X_10087262_INS [dm3] X_10193229_INS [dm6]	C	CG	1.103e^-4	0.282	UTR_3_PRIME CG43902 INTRON CR44894
X	19011897	X_19011897_INS [dm3] X_19117864_INS [dm6]	G	GG	1.103e^-4	0.282	INTERGENIC
3R	15884263	3R_15884263_SNP [dm3] 3R_20058541_SNP [dm6]	C	G	1.104e^-4	0.282	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	17300036	3R_17300036_SNP [dm3] 3R_21474314_SNP [dm6]	G	A	1.106e^-4	0.282	INTERGENIC
3L	13186644	3L_13186644_SNP [dm3] 3L_13193544_SNP [dm6]	T	A	1.106e^-4	0.282	INTERGENIC
3L	5965248	3L_5965248_SNP [dm3] 3L_5972148_SNP [dm6]	A	T	1.107e^-4	0.282	INTRON CG10479	TF binding site BDTNP1_TFBS_twi
X	7802916	X_7802916_DEL [dm3] X_7908883_DEL [dm6]	AC	A	1.113e^-4	0.282	UPSTREAM CG1444 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15491447	X_15491447_SNP [dm3] X_15597414_SNP [dm6]	C	T	1.113e^-4	0.282	INTERGENIC
2L	3393838	2L_3393838_DEL [dm3] 2L_3393838_DEL [dm6]	GGAAGCCCACTTGCTCTCTT...	G	1.113e^-4	0.282	INTERGENIC
2L	6787769	2L_6787769_DEL [dm3] 2L_6787769_DEL [dm6]	TCT	T	1.114e^-4	0.282	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	17881694	3L_17881694_DEL [dm3] 3L_17888594_DEL [dm6]	ACATGTACA	A	1.114e^-4	0.282	INTRON CG7402
3R	24803910	3R_24803910_SNP [dm3] 3R_28978188_SNP [dm6]	G	A	1.115e^-4	0.282	INTERGENIC
3R	20652144	3R_20652144_DEL [dm3] 3R_24826422_DEL [dm6]	ATATTTA	A	1.116e^-4	0.282	CODON_DELETION CG43166 UPSTREAM niki DOWNSTREAM RabX4
3R	19585793	3R_19585793_SNP [dm3] 3R_23760071_SNP [dm6]	T	C	1.118e^-4	0.282	SYNONYMOUS_CODING CG10219 DOWNSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	7293956	X_7293956_DEL [dm3] X_7399923_DEL [dm6]	TTTT	G	1.119e^-4	0.282	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sbb
3L	14105267	3L_14105267_DEL [dm3] 3L_14112167_DEL [dm6]	TC	T	1.119e^-4	0.282	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13896545	2R_13896545_SNP [dm3] 2R_18009040_SNP [dm6]	T	C	1.122e^-4	0.282	INTERGENIC
2L	20236651	2L_20236651_SNP [dm3] 2L_20236651_SNP [dm6]	T	A	1.124e^-4	0.282	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9707732	X_9707732_SNP [dm3] X_9813699_SNP [dm6]	A	T	1.125e^-4	0.282	INTRON CG32698
2R	567033	2R_567033_SNP [dm3] 2R_4679528_SNP [dm6]	C	T	1.125e^-4	0.282	INTERGENIC
3R	21519532	3R_21519532_SNP [dm3] 3R_25693810_SNP [dm6]	C	A	1.126e^-4	0.282	INTERGENIC
3L	13873036	3L_13873036_SNP [dm3] 3L_13879936_SNP [dm6]	T	G	1.129e^-4	0.282	INTRON dysc & 1 other
3R	9552554	3R_9552554_DEL [dm3] 3R_13726832_DEL [dm6]	TAAA	T	1.131e^-4	0.283	INTRON CG34383
3R	25547228	3R_25547228_SNP [dm3] 3R_29721506_SNP [dm6]	C	T	1.133e^-4	0.283	INTRON CG15506	TF binding site mE1_TFBS_chinmo
3R	26277600	3R_26277600_SNP [dm3] 3R_30451878_SNP [dm6]	A	T	1.136e^-4	0.283	INTRON aralar1
2L	4682753	2L_4682753_SNP [dm3] 2L_4682753_SNP [dm6]	T	G	1.138e^-4	0.283	START_GAINED CG11929 UTR_5_PRIME CG11929 DOWNSTREAM Bsg25A
3L	13962394	3L_13962394_SNP [dm3] 3L_13969294_SNP [dm6]	A	G	1.143e^-4	0.283	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3L	14125569	3L_14125569_INS [dm3] 3L_14132469_INS [dm6]	T	TT	1.143e^-4	0.283	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	9552551	3R_9552551_DEL [dm3] 3R_13726829_DEL [dm6]	TG	T	1.143e^-4	0.283	INTRON CG34383
2L	4676089	2L_4676089_INS [dm3] 2L_4676089_INS [dm6]	A	ATTCTATTCTA...	1.144e^-4	0.283	INTERGENIC
3R	8532044	3R_8532044_SNP [dm3] 3R_12706322_SNP [dm6]	T	C	1.146e^-4	0.283	SYNONYMOUS_CODING mus308 DOWNSTREAM CG12279	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25342166	3R_25342166_SNP [dm3] 3R_29516444_SNP [dm6]	A	C	1.146e^-4	0.283	SYNONYMOUS_CODING CG2014	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23628844	3R_23628844_SNP [dm3] 3R_27803122_SNP [dm6]	G	A	1.146e^-4	0.283	INTRON CG34353
2L	4680548	2L_4680548_DEL [dm3] 2L_4680548_DEL [dm6]	AA	A	1.149e^-4	0.283	INTERGENIC
2R	4867140	2R_4867140_SNP [dm3] 2R_8979635_SNP [dm6]	T	C	1.162e^-4	0.286	INTRON CG8213
2L	7798089	2L_7798089_SNP [dm3] 2L_7798089_SNP [dm6]	G	C	1.165e^-4	0.286	INTRON Herp
3R	5753573	3R_5753573_SNP [dm3] 3R_9927851_SNP [dm6]	C	T	1.166e^-4	0.286	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12941175	X_12941175_DEL [dm3] X_13047142_DEL [dm6]	AAATAATATGGTGATAAAA...	A	1.172e^-4	0.287	INTRON rad
X	3659591	X_3659591_DEL [dm3] X_3765558_DEL [dm6]	TGTGT	T	1.178e^-4	0.288	INTRON tlk
X	20571220	X_20571220_SNP [dm3] X_20700193_SNP [dm6]	A	T	1.181e^-4	0.288	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	18144856	3L_18144856_DEL [dm3] 3L_18151756_DEL [dm6]	AGG	A	1.186e^-4	0.289	INTRON CG7330
2R	16646417	2R_16646417_DEL [dm3] 2R_20758912_DEL [dm6]	CA	C	1.188e^-4	0.289	INTERGENIC
3L	21142043	3L_21142043_SNP [dm3] 3L_21148943_SNP [dm6]	C	G	1.190e^-4	0.289	INTRON Ac78C
X	6089738	X_6089738_DEL [dm3] X_6195705_DEL [dm6]	TATTA	CT	1.192e^-4	0.289	DOWNSTREAM CG32751 INTRON CG32750
3R	14173864	3R_14173864_INS [dm3] 3R_18348142_INS [dm6]	G	GTGTAATGGGTAATG...	1.193e^-4	0.289	INTRON CG15803
3L	15769469	3L_15769469_DEL [dm3] 3L_15776369_DEL [dm6]	ACCACTGAGGA...	A	1.196e^-4	0.29	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21005367	3R_21005367_DEL [dm3] 3R_25179645_DEL [dm6]	CAC	C	1.199e^-4	0.29	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7153675	2L_7153675_SNP [dm3] 2L_7153675_SNP [dm6]	G	A	1.202e^-4	0.29	INTRON Pvf3
2R	7277184	2R_7277184_INS [dm3] 2R_11389679_INS [dm6]	A	AA	1.203e^-4	0.29	UPSTREAM CG30022 INTRON sprt
2R	9759021	2R_9759021_SNP [dm3] 2R_13871516_SNP [dm6]	T	A	1.205e^-4	0.29	INTRON shot	TF binding site mE1_TFBS_cad
2L	15211893	2L_15211893_SNP [dm3] 2L_15211893_SNP [dm6]	G	T	1.206e^-4	0.29	INTERGENIC
X	8549142	X_8549142_DEL [dm3] X_8655109_DEL [dm6]	CCCGCTGCGGCTTAA...	C	1.208e^-4	0.29	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25222566	3R_25222566_SNP [dm3] 3R_29396844_SNP [dm6]	C	T	1.209e^-4	0.29	INTRON Ptp99A
2R	567032	2R_567032_SNP [dm3] 2R_4679527_SNP [dm6]	C	T	1.210e^-4	0.29	INTERGENIC
2L	5561911	2L_5561911_DEL [dm3] 2L_5561911_DEL [dm6]	ATACTTTAAGA...	A	1.210e^-4	0.29	INTRON GluRIIB
2R	7143187	2R_7143187_SNP [dm3] 2R_11255682_SNP [dm6]	A	G	1.211e^-4	0.29	SYNONYMOUS_CODING Cpr47Eb UPSTREAM CG13223
3R	13302076	3R_13302076_SNP [dm3] 3R_17476354_SNP [dm6]	C	A	1.220e^-4	0.291	INTRON Dscam3
3L	4725679	3L_4725679_SNP [dm3] 3L_4725679_SNP [dm6]	C	A	1.220e^-4	0.291	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4683467	2L_4683467_SNP [dm3] 2L_4683467_SNP [dm6]	G	C	1.226e^-4	0.291	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl
2L	13754844	2L_13754844_SNP [dm3] 2L_13754844_SNP [dm6]	T	A	1.228e^-4	0.291	DOWNSTREAM CR44846 INTRON CR44846 & 1 other
X	15501924	X_15501924_SNP [dm3] X_15607891_SNP [dm6]	T	C	1.229e^-4	0.291	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16303513	3R_16303513_SNP [dm3] 3R_20477791_SNP [dm6]	T	C	1.230e^-4	0.291	INTRON Gfrl
X	4573729	X_4573729_SNP [dm3] X_4679696_SNP [dm6]	T	C	1.230e^-4	0.291	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13988325	2L_13988325_DEL [dm3] 2L_13988325_DEL [dm6]	AAATCACTTAATAAGC...	A	1.233e^-4	0.291	INTRON rk
3R	15875812	3R_15875812_SNP [dm3] 3R_20050090_SNP [dm6]	C	A	1.234e^-4	0.291	INTRON CG17193
X	15655707	X_15655707_SNP [dm3] X_15761674_SNP [dm6]	C	T	1.235e^-4	0.291	NON_SYNONYMOUS_CODING mRpL3 UPSTREAM Graf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9234949	2R_9234949_SNP [dm3] 2R_13347444_SNP [dm6]	T	C	1.236e^-4	0.291	INTRON CR44206
2L	4256555	2L_4256555_DEL [dm3] 2L_4256555_DEL [dm6]	TT	T	1.236e^-4	0.291	UPSTREAM CR45294 & 1 other DOWNSTREAM CR45296 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	5773950	3R_5773950_SNP [dm3] 3R_9948228_SNP [dm6]	T	A	1.237e^-4	0.291	INTRON Glut4EF
2R	9266899	2R_9266899_DEL [dm3] 2R_13379394_DEL [dm6]	TCGCCGCGCAGCTCCATT...	T	1.240e^-4	0.291	INTERGENIC
X	9300857	X_9300857_SNP [dm3] X_9406824_SNP [dm6]	T	C	1.241e^-4	0.291	INTRON mgl	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	17989083	3R_17989083_SNP [dm3] 3R_22163361_SNP [dm6]	T	C	1.243e^-4	0.291	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	25580266	3R_25580266_INS [dm3] 3R_29754544_INS [dm6]	G	AA	1.246e^-4	0.291	DOWNSTREAM CR44953 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15723610	3R_15723610_SNP [dm3] 3R_19897888_SNP [dm6]	G	A	1.247e^-4	0.291	SYNONYMOUS_CODING CG4733 DOWNSTREAM CG4538 INTRON CG4538
3R	15885498	3R_15885498_SNP [dm3] 3R_20059776_SNP [dm6]	A	T	1.248e^-4	0.291	UPSTREAM CG4390 DOWNSTREAM mdlc INTERGENIC
2L	7267421	2L_7267421_DEL [dm3] 2L_7267421_DEL [dm6]	AGCTCCA	A	1.249e^-4	0.291	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12279600	2L_12279600_DEL [dm3] 2L_12279600_DEL [dm6]	GCCTCG	G	1.249e^-4	0.291	INTRON aret
2L	8561266	2L_8561266_DEL [dm3] 2L_8561266_DEL [dm6]	TT	T	1.253e^-4	0.292	INTRON Sema-1a
3R	24803908	3R_24803908_SNP [dm3] 3R_28978186_SNP [dm6]	A	G	1.257e^-4	0.292	INTERGENIC
3R	22741710	3R_22741710_SNP [dm3] 3R_26915988_SNP [dm6]	C	T	1.257e^-4	0.292	INTRON sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	16432118	3L_16432118_SNP [dm3] 3L_16439018_SNP [dm6]	C	G	1.260e^-4	0.292	INTRON CG33158 & 1 other
3L	978971	3L_978971_SNP [dm3] 3L_978971_SNP [dm6]	C	T	1.261e^-4	0.292	INTRON Glut1
2R	15056515	2R_15056515_SNP [dm3] 2R_19169010_SNP [dm6]	A	C	1.262e^-4	0.292	INTRON CG10737
2L	14399184	2L_14399184_SNP [dm3] 2L_14399184_SNP [dm6]	A	G	1.263e^-4	0.292	INTRON elB
2L	18004694	2L_18004694_DEL [dm3] 2L_18004694_DEL [dm6]	AGGAACCCAAAATA...	A	1.266e^-4	0.292	INTERGENIC
3R	18356757	3R_18356757_SNP [dm3] 3R_22531035_SNP [dm6]	G	A	1.266e^-4	0.292	UPSTREAM CG33099 INTRON CG33093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7147624	X_7147624_SNP [dm3] X_7253591_SNP [dm6]	T	A	1.272e^-4	0.292	INTRON CR44357
3R	15895308	3R_15895308_SNP [dm3] 3R_20069586_SNP [dm6]	C	T	1.272e^-4	0.292	INTERGENIC
X	20571225	X_20571225_SNP [dm3] X_20700198_SNP [dm6]	G	C	1.274e^-4	0.292	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	4786880	X_4786880_INS [dm3] X_4892847_INS [dm6]	A	AA	1.277e^-4	0.292	INTRON CG42594
3R	13559090	3R_13559090_SNP [dm3] 3R_17733368_SNP [dm6]	A	T	1.279e^-4	0.292	UPSTREAM CG14321 DOWNSTREAM Lgr1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24046940	3R_24046940_DEL [dm3] 3R_28221218_DEL [dm6]	AA	A	1.280e^-4	0.292	INTRON CG34354
2L	14798741	2L_14798741_SNP [dm3] 2L_14798741_SNP [dm6]	A	G	1.283e^-4	0.292	INTERGENIC
2R	8535153	2R_8535153_INS [dm3] 2R_12647648_INS [dm6]	G	GG	1.283e^-4	0.292	INTRON CG8785
3R	15893441	3R_15893441_SNP [dm3] 3R_20067719_SNP [dm6]	A	G	1.283e^-4	0.292	INTERGENIC
X	14260620	X_14260620_SNP [dm3] X_14366587_SNP [dm6]	A	T	1.284e^-4	0.292	INTRON dpr8
3R	19465064	3R_19465064_SNP [dm3] 3R_23639342_SNP [dm6]	A	G	1.286e^-4	0.292	INTRON CG31145	TF binding site mE1_TFBS_inv
2L	4706204	2L_4706204_DEL [dm3] 2L_4706204_DEL [dm6]	CG	C	1.286e^-4	0.292	INTRON CG34351
2L	14269190	2L_14269190_SNP [dm3] 2L_14269190_SNP [dm6]	C	A	1.287e^-4	0.292	INTRON wb	TF binding site mE1_TFBS_sens
3R	9552529	3R_9552529_SNP [dm3] 3R_13726807_SNP [dm6]	T	G	1.293e^-4	0.293	INTRON CG34383
3L	17057244	3L_17057244_SNP [dm3] 3L_17064144_SNP [dm6]	C	T	1.294e^-4	0.293	UTR_3_PRIME Rbp6
X	16426766	X_16426766_DEL [dm3] X_16532733_DEL [dm6]	ACATATATATATA...	A	1.297e^-4	0.293	INTRON para
X	19863826	X_19863826_DEL [dm3] X_19969793_DEL [dm6]	TT	T	1.299e^-4	0.293	DOWNSTREAM Nep3 INTERGENIC
X	20758370	X_20758370_INS [dm3] X_20887343_INS [dm6]	A	AA	1.302e^-4	0.294	INTRON shakB
X	11368726	X_11368726_SNP [dm3] X_11474693_SNP [dm6]	G	A	1.309e^-4	0.295	INTRON CG43155
3L	10528364	3L_10528364_SNP [dm3] 3L_10535264_SNP [dm6]	C	A	1.313e^-4	0.295	INTRON A2bp1
2L	6986001	2L_6986001_DEL [dm3] 2L_6986001_DEL [dm6]	TGTAT	T	1.315e^-4	0.295	INTRON uif EXON CR44326
3R	15812327	3R_15812327_SNP [dm3] 3R_19986605_SNP [dm6]	A	T	1.317e^-4	0.295	INTRON Hs6st
3L	13355483	3L_13355483_DEL [dm3] 3L_13362383_DEL [dm6]	AT	A	1.319e^-4	0.295	INTERGENIC
3R	15811085	3R_15811085_INS [dm3] 3R_19985363_INS [dm6]	C	CCAC	1.319e^-4	0.295	INTRON Hs6st
3L	18859273	3L_18859273_SNP [dm3] 3L_18866173_SNP [dm6]	C	A	1.320e^-4	0.295	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25519588	3R_25519588_SNP [dm3] 3R_29693866_SNP [dm6]	G	C	1.325e^-4	0.295	INTRON dmrt99B
3R	771575	3R_771575_DEL [dm3] 3R_4945853_DEL [dm6]	CTT	C	1.325e^-4	0.295	UPSTREAM CR45188 DOWNSTREAM Cdep INTERGENIC
3R	15883375	3R_15883375_SNP [dm3] 3R_20057653_SNP [dm6]	T	C	1.325e^-4	0.295	UPSTREAM mdlc & 1 other INTRON CG4390	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	3159915	3L_3159915_SNP [dm3] 3L_3159915_SNP [dm6]	T	C	1.326e^-4	0.295	UPSTREAM pfk & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	11863515	3R_11863515_SNP [dm3] 3R_16037793_SNP [dm6]	G	C	1.328e^-4	0.295	INTRON pnr	TF binding site BDTNP1_TFBS_dl
2R	19145063	2R_19145063_SNP [dm3] 2R_23257540_SNP [dm6]	A	T	1.331e^-4	0.296	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13534518	3L_13534518_SNP [dm3] 3L_13541418_SNP [dm6]	T	A	1.335e^-4	0.296	INTRON bru-3
2R	10508110	2R_10508110_INS [dm3] 2R_14620605_INS [dm6]	A	AGAA	1.338e^-4	0.296	UPSTREAM Uhg5 DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	4586242	2L_4586242_SNP [dm3] 2L_4586242_SNP [dm6]	G	A	1.339e^-4	0.296	INTRON dp
2L	10329370	2L_10329370_SNP [dm3] 2L_10329370_SNP [dm6]	T	C	1.339e^-4	0.296	SYNONYMOUS_CODING CG5375
3R	10572386	3R_10572386_SNP [dm3] 3R_14746664_SNP [dm6]	G	A	1.340e^-4	0.296	SYNONYMOUS_CODING smp-30 INTRON jvl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	14860552	3R_14860552_SNP [dm3] 3R_19034830_SNP [dm6]	C	T	1.342e^-4	0.296	INTRON CG6026
2R	10063877	2R_10063877_SNP [dm3] 2R_14176372_SNP [dm6]	C	T	1.347e^-4	0.296	INTRON cg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	17319697	X_17319697_DEL [dm3] X_17425664_DEL [dm6]	TT	T	1.347e^-4	0.296	UPSTREAM CG5613 INTRON CG12994 & 1 other
2L	1708700	2L_1708700_SNP [dm3] 2L_1708700_SNP [dm6]	A	G	1.349e^-4	0.296	INTRON CG17660 EXON CR44976	TF binding site mE1_TFBS_cad
2L	21355263	2L_21355263_DEL [dm3] 2L_21355263_DEL [dm6]	ACCTAA	A	1.349e^-4	0.296	INTRON Tsp39D
3L	18213428	3L_18213428_SNP [dm3] 3L_18220328_SNP [dm6]	A	C	1.349e^-4	0.296	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3R	15056465	3R_15056465_SNP [dm3] 3R_19230743_SNP [dm6]	T	C	1.353e^-4	0.296	UTR_3_PRIME CG3773 DOWNSTREAM unc79
X	16038886	X_16038886_INS [dm3] X_16144853_INS [dm6]	A	AA	1.353e^-4	0.296	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
3L	11087458	3L_11087458_SNP [dm3] 3L_11094358_SNP [dm6]	T	C	1.355e^-4	0.296	SPLICE_SITE_REGION CG6279 UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3L	5288936	3L_5288936_DEL [dm3] 3L_5295836_DEL [dm6]	TA	G	1.357e^-4	0.296	INTERGENIC
X	10012641	X_10012641_SNP [dm3] X_10118608_SNP [dm6]	A	T	1.359e^-4	0.296	INTRON RhoU & 1 other
2L	18044757	2L_18044757_DEL [dm3] 2L_18044757_DEL [dm6]	GGCCCTG	G	1.360e^-4	0.296	INTRON rdo
3R	22532527	3R_22532527_SNP [dm3] 3R_26706805_SNP [dm6]	G	A	1.361e^-4	0.296	INTRON amon
2L	8058522	2L_8058522_SNP [dm3] 2L_8058522_SNP [dm6]	A	G	1.364e^-4	0.296	SYNONYMOUS_CODING poe
X	6091975	X_6091975_SNP [dm3] X_6197942_SNP [dm6]	G	A	1.365e^-4	0.296	SYNONYMOUS_CODING CG32751
3R	4176758	3R_4176758_SNP [dm3] 3R_8351036_SNP [dm6]	A	G	1.366e^-4	0.296	SYNONYMOUS_CODING Atg13	TF binding site mE1_TFBS_sens
2L	6461666	2L_6461666_INS [dm3] 2L_6461666_INS [dm6]	C	CATTGAGC	1.368e^-4	0.296	INTRON CG16947
2R	10553066	2R_10553066_SNP [dm3] 2R_14665561_SNP [dm6]	C	G	1.376e^-4	0.297	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3R	25477948	3R_25477948_SNP [dm3] 3R_29652226_SNP [dm6]	C	T	1.377e^-4	0.297	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2442436	2R_2442436_SNP [dm3] 2R_6554931_SNP [dm6]	C	T	1.380e^-4	0.297	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7139384	2R_7139384_SNP [dm3] 2R_11251879_SNP [dm6]	T	G	1.381e^-4	0.297	UTR_3_PRIME Or47a & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	592996	3L_592996_DEL [dm3] 3L_592996_DEL [dm6]	ATAAT	G	1.382e^-4	0.297	UPSTREAM MED14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	8121006	2L_8121006_SNP [dm3] 2L_8121006_SNP [dm6]	G	A	1.388e^-4	0.297	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15290664	3R_15290664_SNP [dm3] 3R_19464942_SNP [dm6]	T	C	1.391e^-4	0.297	INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7409004	2L_7409004_DEL [dm3] 2L_7409004_DEL [dm6]	GCTATCCCGCGTCTGTAG...	G	1.392e^-4	0.297	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	10126803	3R_10126803_SNP [dm3] 3R_14301081_SNP [dm6]	A	G	1.393e^-4	0.297	INTRON CG12207	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	16071928	X_16071928_DEL [dm3] X_16177895_DEL [dm6]	AA	A	1.394e^-4	0.297	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med
3R	13724638	3R_13724638_SNP [dm3] 3R_17898916_SNP [dm6]	T	G	1.394e^-4	0.297	INTRON Rim
3L	978936	3L_978936_SNP [dm3] 3L_978936_SNP [dm6]	C	T	1.399e^-4	0.297	INTRON Glut1
X	20402845	X_20402845_DEL [dm3] X_20531818_DEL [dm6]	CTGTTCGCATGAACCTTTTC...	C	1.399e^-4	0.297	INTERGENIC
2R	2115682	2R_2115682_INS [dm3] 2R_6228177_INS [dm6]	A	AA	1.401e^-4	0.297	INTRON bin3
3L	14788830	3L_14788830_SNP [dm3] 3L_14795730_SNP [dm6]	C	A	1.402e^-4	0.297	SYNONYMOUS_CODING CG9425	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14973223	3R_14973223_SNP [dm3] 3R_19147501_SNP [dm6]	T	A	1.403e^-4	0.297	UTR_5_PRIME Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12835297	3L_12835297_SNP [dm3] 3L_12842197_SNP [dm6]	A	C	1.404e^-4	0.297	INTRON CG10960	TF binding site mE1_TFBS_zfh1
3L	7818398	3L_7818398_SNP [dm3] 3L_7825298_SNP [dm6]	T	G	1.406e^-4	0.297	INTRON Pdp1
X	20561845	X_20561845_INS [dm3] X_20690818_INS [dm6]	C	CC	1.408e^-4	0.297	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	13753794	2L_13753794_DEL [dm3] 2L_13753794_DEL [dm6]	AGC	A	1.409e^-4	0.297	INTRON CR44846 & 1 other EXON CR44846
2L	3678958	2L_3678958_SNP [dm3] 2L_3678958_SNP [dm6]	C	G	1.410e^-4	0.297	INTRON CG34340
3L	15944652	3L_15944652_SNP [dm3] 3L_15951552_SNP [dm6]	C	A	1.410e^-4	0.297	INTRON Pka-C3
3R	15876894	3R_15876894_SNP [dm3] 3R_20051172_SNP [dm6]	T	G	1.411e^-4	0.297	INTRON CG17193
X	18329330	X_18329330_INS [dm3] X_18435297_INS [dm6]	G	GAGCCGGG	1.417e^-4	0.298	DOWNSTREAM CG32548 INTERGENIC
3R	15875938	3R_15875938_SNP [dm3] 3R_20050216_SNP [dm6]	A	T	1.419e^-4	0.298	INTRON CG17193
3L	16294324	3L_16294324_SNP [dm3] 3L_16301224_SNP [dm6]	C	T	1.420e^-4	0.298	UPSTREAM CG4982 INTERGENIC
2R	12811637	2R_12811637_SNP [dm3] 2R_16924132_SNP [dm6]	T	A	1.422e^-4	0.298	UPSTREAM Pkc53E INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13333692	X_13333692_DEL [dm3] X_13439659_DEL [dm6]	TCCTATA	T	1.424e^-4	0.298	INTERGENIC
2L	6779679	2L_6779679_INS [dm3] 2L_6779679_INS [dm6]	C	TCG	1.426e^-4	0.298	INTRON nrv1
3L	983375	3L_983375_DEL [dm3] 3L_983375_DEL [dm6]	CT	C	1.427e^-4	0.298	DOWNSTREAM Glut1 INTRON Glut1
3L	1824462	3L_1824462_SNP [dm3] 3L_1824462_SNP [dm6]	G	T	1.431e^-4	0.298	SYNONYMOUS_CODING Cpr62Ba
3R	16232350	3R_16232350_SNP [dm3] 3R_20406628_SNP [dm6]	A	C	1.433e^-4	0.298	UTR_3_PRIME CG4335 INTRON Gfrl	TF binding site mE1_TFBS_inv
3R	13807712	3R_13807712_INS [dm3] 3R_17981990_INS [dm6]	C	CC	1.435e^-4	0.298	INTRON cpo
X	10225532	X_10225532_INS [dm3] X_10331499_INS [dm6]	A	AA	1.435e^-4	0.298	INTRON CG15306
3L	16029257	3L_16029257_SNP [dm3] 3L_16036157_SNP [dm6]	A	G	1.436e^-4	0.298	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
2R	9244342	2R_9244342_SNP [dm3] 2R_13356837_SNP [dm6]	C	T	1.437e^-4	0.298	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4569781	X_4569781_INS [dm3] X_4675748_INS [dm6]	T	TT	1.440e^-4	0.299	INTRON rap
X	6303961	X_6303961_DEL [dm3] X_6409928_DEL [dm6]	ATAACTAATATAATATAATA...	A	1.442e^-4	0.299	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	6641260	X_6641260_INS [dm3] X_6747227_INS [dm6]	T	TTGGCAT	1.445e^-4	0.299	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15564369	3R_15564369_SNP [dm3] 3R_19738647_SNP [dm6]	T	C	1.447e^-4	0.299	INTRON GluClalpha
3R	25222382	3R_25222382_DEL [dm3] 3R_29396660_DEL [dm6]	AG	A	1.449e^-4	0.299	INTRON Ptp99A
3L	6520127	3L_6520127_DEL [dm3] 3L_6527027_DEL [dm6]	TGGA	T	1.449e^-4	0.299	INTRON sfl
2R	7834188	2R_7834188_SNP [dm3] 2R_11946683_SNP [dm6]	A	T	1.455e^-4	0.299	INTRON CG13188
3L	4727289	3L_4727289_SNP [dm3] 3L_4727289_SNP [dm6]	G	A	1.458e^-4	0.299	INTRON RhoGEF64C
3L	11087469	3L_11087469_SNP [dm3] 3L_11094369_SNP [dm6]	C	T	1.460e^-4	0.299	UTR_5_PRIME CG6279 INTRON CG6279	TF binding site mE1_TFBS_chinmo
3L	7651275	3L_7651275_SNP [dm3] 3L_7658175_SNP [dm6]	G	A	1.460e^-4	0.299	SYNONYMOUS_CODING Ank2 DOWNSTREAM CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad
2R	2395174	2R_2395174_SNP [dm3] 2R_6507669_SNP [dm6]	C	T	1.462e^-4	0.299	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8078006	2R_8078006_INS [dm3] 2R_12190501_INS [dm6]	G	GG	1.463e^-4	0.299	UPSTREAM Cyp6t3 & 1 other INTERGENIC
3R	18606034	3R_18606034_DEL [dm3] 3R_22780312_DEL [dm6]	TGAT	T	1.466e^-4	0.299	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5942077	2L_5942077_DEL [dm3] 2L_5942077_DEL [dm6]	CCACACTCACCCACCAAAAC...	C	1.467e^-4	0.299	UPSTREAM CR45289 DOWNSTREAM Sfp26Ad EXON CR45289
3L	2945474	3L_2945474_SNP [dm3] 3L_2945474_SNP [dm6]	T	C	1.468e^-4	0.299	UTR_3_PRIME Shab INTRON Shab
2L	21319865	2L_21319865_DEL [dm3] 2L_21319865_DEL [dm6]	TATCACCAATT...	T	1.468e^-4	0.299	DOWNSTREAM crc EXON CR44785
3L	6520153	3L_6520153_SNP [dm3] 3L_6527053_SNP [dm6]	T	A	1.469e^-4	0.299	INTRON sfl
3R	15241506	3R_15241506_SNP [dm3] 3R_19415784_SNP [dm6]	C	A	1.473e^-4	0.3	UTR_5_PRIME CG31221
3R	26035057	3R_26035057_DEL [dm3] 3R_30209335_DEL [dm6]	AT	A	1.473e^-4	0.3	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20868600	2L_20868600_SNP [dm3] 2L_20868600_SNP [dm6]	G	C	1.479e^-4	0.3	DOWNSTREAM CG9338 INTRON CG31675
2R	15912765	2R_15912765_SNP [dm3] 2R_20025260_SNP [dm6]	A	G	1.480e^-4	0.3	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1183727	X_1183727_INS [dm3] X_1289694_INS [dm6]	A	AA	1.481e^-4	0.3	DOWNSTREAM DAAM & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7105130	3L_7105130_INS [dm3] 3L_7112030_INS [dm6]	A	ACA	1.482e^-4	0.3	INTRON form3
3R	19586137	3R_19586137_SNP [dm3] 3R_23760415_SNP [dm6]	C	G	1.484e^-4	0.3	DOWNSTREAM Plip & 1 other INTRON CG10219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16241658	3R_16241658_INS [dm3] 3R_20415936_INS [dm6]	T	TGT	1.486e^-4	0.3	INTRON Gfrl
X	16726433	X_16726433_INS [dm3] X_16832400_INS [dm6]	C	CAC	1.487e^-4	0.3	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
X	7147576	X_7147576_SNP [dm3] X_7253543_SNP [dm6]	G	A	1.489e^-4	0.3	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2R	10182386	2R_10182386_DEL [dm3] 2R_14294881_DEL [dm6]	TGCTTTAAAGGGACTAGGCA...	T	1.490e^-4	0.3	UTR_3_PRIME Ih INTRON Ih
3L	6520186	3L_6520186_SNP [dm3] 3L_6527086_SNP [dm6]	T	C	1.490e^-4	0.3	INTRON sfl
2R	11573667	2R_11573667_SNP [dm3] 2R_15686162_SNP [dm6]	A	T	1.491e^-4	0.3	UPSTREAM CG30082 INTRON Ranbp11	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	10121991	3R_10121991_SNP [dm3] 3R_14296269_SNP [dm6]	G	T	1.493e^-4	0.3	INTRON CG12207
2L	4678870	2L_4678870_SNP [dm3] 2L_4678870_SNP [dm6]	T	A	1.497e^-4	0.3	INTERGENIC
3L	13190156	3L_13190156_DEL [dm3] 3L_13197056_DEL [dm6]	AGAATGA	A	1.498e^-4	0.3	INTERGENIC
3L	9334337	3L_9334337_SNP [dm3] 3L_9341237_SNP [dm6]	T	G	1.499e^-4	0.3	INTRON PGRP-LC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7175361	3L_7175361_SNP [dm3] 3L_7182261_SNP [dm6]	G	C	1.501e^-4	0.3	INTRON Dscam2
3R	10483895	3R_10483895_SNP [dm3] 3R_14658173_SNP [dm6]	A	T	1.506e^-4	0.3	INTRON CG3505
2R	3924217	2R_3924217_DEL [dm3] 2R_8036712_DEL [dm6]	GGAGTGCAGTGCAGTCGCAG...	G	1.506e^-4	0.3	INTRON Optix
3R	26080147	3R_26080147_SNP [dm3] 3R_30254425_SNP [dm6]	T	G	1.512e^-4	0.3	DOWNSTREAM CG18404 INTERGENIC
3R	15759532	3R_15759532_SNP [dm3] 3R_19933810_SNP [dm6]	A	G	1.513e^-4	0.3	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6936203	X_6936203_SNP [dm3] X_7042170_SNP [dm6]	A	T	1.514e^-4	0.3	DOWNSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	111618	2L_111618_DEL [dm3] 2L_111618_DEL [dm6]	AGACTTTGGTA...	A	1.514e^-4	0.3	DOWNSTREAM Sam-S INTRON Sam-S
3L	6531947	3L_6531947_SNP [dm3] 3L_6538847_SNP [dm6]	G	T	1.516e^-4	0.3	INTRON sfl
3L	21122228	3L_21122228_SNP [dm3] 3L_21129128_SNP [dm6]	C	T	1.519e^-4	0.3	INTRON ko
2L	7133434	2L_7133434_DEL [dm3] 2L_7133434_DEL [dm6]	AC	G	1.519e^-4	0.3	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10109219	3L_10109219_DEL [dm3] 3L_10116119_DEL [dm6]	TT	T	1.520e^-4	0.3	INTRON dpr6
3L	20052221	3L_20052221_SNP [dm3] 3L_20059121_SNP [dm6]	C	T	1.520e^-4	0.3	UTR_3_PRIME sNPF-R DOWNSTREAM sNPF-R
3R	10628865	3R_10628865_SNP [dm3] 3R_14803143_SNP [dm6]	G	A	1.523e^-4	0.3	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
2L	17094699	2L_17094699_DEL [dm3] 2L_17094699_DEL [dm6]	AA	T	1.526e^-4	0.3	INTERGENIC
X	7747612	X_7747612_SNP [dm3] X_7853579_SNP [dm6]	G	A	1.528e^-4	0.3	SYNONYMOUS_CODING CG10920	TF binding site mE1_TFBS_chinmo
X	8635766	X_8635766_SNP [dm3] X_8741733_SNP [dm6]	G	T	1.528e^-4	0.3	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14522746	X_14522746_SNP [dm3] X_14628713_SNP [dm6]	T	C	1.529e^-4	0.3	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6690672	3R_6690672_DEL [dm3] 3R_10864950_DEL [dm6]	TATAC	T	1.529e^-4	0.3	UTR_3_PRIME SelR INTRON SelR
2R	16862028	2R_16862028_SNP [dm3] 2R_20974523_SNP [dm6]	A	G	1.532e^-4	0.3	UPSTREAM CG15649 & 1 other INTERGENIC
2R	19897175	2R_19897175_SNP [dm3] 2R_24009652_SNP [dm6]	T	A	1.538e^-4	0.3	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	76235	3L_76235_DEL [dm3] 3L_76235_DEL [dm6]	CC	C	1.541e^-4	0.3	UPSTREAM CG13405 INTERGENIC
2L	14967115	2L_14967115_INS [dm3] 2L_14967115_INS [dm6]	A	AAATCAAACAGA...	1.544e^-4	0.3	INTRON CG42313
3R	15324769	3R_15324769_SNP [dm3] 3R_19499047_SNP [dm6]	C	A	1.544e^-4	0.3	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	6566283	X_6566283_DEL [dm3] X_6672250_DEL [dm6]	GT	G	1.547e^-4	0.3	INTRON CG3198	TF binding site mE1_TFBS_inv
3R	17299942	3R_17299942_INS [dm3] 3R_21474220_INS [dm6]	T	TTTAA	1.547e^-4	0.3	INTERGENIC
2R	6437763	2R_6437763_SNP [dm3] 2R_10550258_SNP [dm6]	G	A	1.548e^-4	0.3	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	15885470	3R_15885470_SNP [dm3] 3R_20059748_SNP [dm6]	T	C	1.548e^-4	0.3	UTR_5_PRIME CG4390 DOWNSTREAM mdlc
2R	10499046	2R_10499046_DEL [dm3] 2R_14611541_DEL [dm6]	AA	A	1.549e^-4	0.3	INTRON Su_var_2-HP2
2R	14492105	2R_14492105_SNP [dm3] 2R_18604600_SNP [dm6]	C	A	1.551e^-4	0.3	INTRON GEFmeso	TF binding site mE1_TFBS_inv
2R	5196215	2R_5196215_DEL [dm3] 2R_9308710_DEL [dm6]	TT	T	1.551e^-4	0.3	UTR_5_PRIME Myd88 UPSTREAM Myd88 DOWNSTREAM CG13739 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14219632	3L_14219632_DEL [dm3] 3L_14226532_DEL [dm6]	CTA	G	1.552e^-4	0.3	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	22241995	X_22241995_DEL [dm3] X_22840159_DEL [dm6]	TGGGGAGGTAATAT...	T	1.553e^-4	0.3	INTRON fog & 1 other
X	4573741	X_4573741_SNP [dm3] X_4679708_SNP [dm6]	T	C	1.555e^-4	0.3	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15056718	3R_15056718_SNP [dm3] 3R_19230996_SNP [dm6]	T	C	1.559e^-4	0.3	SYNONYMOUS_CODING unc79 DOWNSTREAM CG3773	TF binding site mE1_TFBS_chinmo
2L	11607663	2L_11607663_SNP [dm3] 2L_11607663_SNP [dm6]	T	G	1.559e^-4	0.3	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4174335	3L_4174335_INS [dm3] 3L_4174335_INS [dm6]	C	CCTTTTC	1.561e^-4	0.3	DOWNSTREAM Ero1L & 1 other INTRON CG18675	TF binding site mE1_TFBS_sens
2L	2802004	2L_2802004_SNP [dm3] 2L_2802004_SNP [dm6]	T	C	1.563e^-4	0.3	INTERGENIC
2L	17903868	2L_17903868_DEL [dm3] 2L_17903868_DEL [dm6]	AG	A	1.566e^-4	0.3	UPSTREAM CR45333 INTERGENIC
3R	15877371	3R_15877371_SNP [dm3] 3R_20051649_SNP [dm6]	T	A	1.566e^-4	0.3	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	4742706	2L_4742706_SNP [dm3] 2L_4742706_SNP [dm6]	G	A	1.569e^-4	0.3	INTRON CG15630
3R	10483914	3R_10483914_SNP [dm3] 3R_14658192_SNP [dm6]	C	A	1.570e^-4	0.3	INTRON CG3505
3R	15241503	3R_15241503_SNP [dm3] 3R_19415781_SNP [dm6]	T	C	1.570e^-4	0.3	UTR_5_PRIME CG31221
2R	18045745	2R_18045745_INS [dm3] 2R_22158240_INS [dm6]	G	GTGG	1.573e^-4	0.3	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15242326	3R_15242326_SNP [dm3] 3R_19416604_SNP [dm6]	T	G	1.573e^-4	0.3	INTRON CG31221
3L	19271844	3L_19271844_SNP [dm3] 3L_19278744_SNP [dm6]	A	T	1.575e^-4	0.3	INTRON CG14086
2R	14609902	2R_14609902_SNP [dm3] 2R_18722397_SNP [dm6]	A	G	1.578e^-4	0.3	INTRON Hs3st-A
3L	4098561	3L_4098561_SNP [dm3] 3L_4098561_SNP [dm6]	A	G	1.583e^-4	0.3	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	10930395	2L_10930395_SNP [dm3] 2L_10930395_SNP [dm6]	G	A	1.584e^-4	0.3	INTRON dpr2
2R	10443052	2R_10443052_INS [dm3] 2R_14555547_INS [dm6]	A	AAAA	1.589e^-4	0.3	INTRON ttv
3L	10641092	3L_10641092_SNP [dm3] 3L_10647992_SNP [dm6]	T	A	1.589e^-4	0.3	INTRON CG32066
X	20759340	X_20759340_SNP [dm3] X_20888313_SNP [dm6]	A	C	1.592e^-4	0.3	INTRON shakB
3R	25222387	3R_25222387_INS [dm3] 3R_29396665_INS [dm6]	GC	AGATA	1.592e^-4	0.3	INTRON Ptp99A
3R	15877321	3R_15877321_SNP [dm3] 3R_20051599_SNP [dm6]	G	A	1.592e^-4	0.3	INTRON CG17193
2L	12210129	2L_12210129_SNP [dm3] 2L_12210129_SNP [dm6]	T	G	1.593e^-4	0.3	DOWNSTREAM CG31759 INTRON aret
3L	15402313	3L_15402313_SNP [dm3] 3L_15409213_SNP [dm6]	C	T	1.594e^-4	0.3	DOWNSTREAM CG33259 INTERGENIC
3R	15882599	3R_15882599_SNP [dm3] 3R_20056877_SNP [dm6]	C	A	1.595e^-4	0.3	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17439088	X_17439088_DEL [dm3] X_17545055_DEL [dm6]	TAAATAAAAATAGCGAGGCA...	T	1.595e^-4	0.3	INTRON CG43658
X	8816041	X_8816041_SNP [dm3] X_8922008_SNP [dm6]	T	A	1.595e^-4	0.3	DOWNSTREAM CG12661 INTRON rdgA
3R	15879766	3R_15879766_SNP [dm3] 3R_20054044_SNP [dm6]	G	C	1.596e^-4	0.3	INTRON CG17193	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24664576	3R_24664576_SNP [dm3] 3R_28838854_SNP [dm6]	C	T	1.596e^-4	0.3	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3627760	2L_3627760_DEL [dm3] 2L_3627760_DEL [dm6]	TT	T	1.597e^-4	0.3	INTRON for
2L	8590396	2L_8590396_SNP [dm3] 2L_8590396_SNP [dm6]	A	C	1.601e^-4	0.3	INTRON Sema-1a EXON CR43855
3L	21861112	3L_21861112_SNP [dm3] 3L_21868012_SNP [dm6]	A	C	1.601e^-4	0.3	INTRON mub	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

SegregVariants_X phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results