DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.146e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05831

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2393 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	17896790	2L_17896790_SNP [dm3] 2L_17896790_SNP [dm6]	A	T	5.671e^-7	0.566	INTERGENIC
2L	1819310	2L_1819310_SNP [dm3] 2L_1819310_SNP [dm6]	G	A	7.234e^-7	0.566	INTERGENIC
3R	18526806	3R_18526806_SNP [dm3] 3R_22701084_SNP [dm6]	A	G	9.050e^-7	0.566	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
3R	23563740	3R_23563740_SNP [dm3] 3R_27738018_SNP [dm6]	G	A	1.869e^-6	0.591	INTRON Ets98B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3001803	2L_3001803_SNP [dm3] 2L_3001803_SNP [dm6]	A	C	1.916e^-6	0.591	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	17884043	2L_17884043_SNP [dm3] 2L_17884043_SNP [dm6]	C	T	2.105e^-6	0.591	INTERGENIC
X	10440786	X_10440786_SNP [dm3] X_10546753_SNP [dm6]	G	A	2.924e^-6	0.591	UTR_5_PRIME spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10503033	3L_10503033_SNP [dm3] 3L_10509933_SNP [dm6]	G	A	3.365e^-6	0.591	INTRON A2bp1
3L	6708378	3L_6708378_SNP [dm3] 3L_6715278_SNP [dm6]	G	A	3.903e^-6	0.591	SYNONYMOUS_CODING ple	TF binding site mE1_TFBS_chinmo
3R	9890857	3R_9890857_SNP [dm3] 3R_14065135_SNP [dm6]	A	G	4.664e^-6	0.591	INTRON foxo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9396551	2L_9396551_SNP [dm3] 2L_9396551_SNP [dm6]	G	A	4.712e^-6	0.591	DOWNSTREAM CG4438 INTRON Shawl
2R	16716811	2R_16716811_SNP [dm3] 2R_20829306_SNP [dm6]	G	A	4.764e^-6	0.591	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20173697	2R_20173697_SNP [dm3] 2R_24286174_SNP [dm6]	C	T	4.989e^-6	0.591	INTRON nvy	TF binding site mE1_TFBS_chinmo
3L	5522754	3L_5522754_SNP [dm3] 3L_5529654_SNP [dm6]	C	T	5.562e^-6	0.591	UPSTREAM Lkr INTERGENIC
X	14217060	X_14217060_SNP [dm3] X_14323027_SNP [dm6]	C	G	5.604e^-6	0.591	INTRON dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25520272	3R_25520272_SNP [dm3] 3R_29694550_SNP [dm6]	T	C	6.659e^-6	0.591	INTRON dmrt99B
2L	17883167	2L_17883167_DEL [dm3] 2L_17883167_DEL [dm6]	AGACA	A	6.733e^-6	0.591	INTERGENIC
3L	8974462	3L_8974462_SNP [dm3] 3L_8981362_SNP [dm6]	T	A	6.867e^-6	0.591	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
3L	11309025	3L_11309025_SNP [dm3] 3L_11315925_SNP [dm6]	T	C	7.020e^-6	0.591	EXON CR44361	TF binding site BDTNP1_TFBS_twi
3L	10503024	3L_10503024_INS [dm3] 3L_10509924_INS [dm6]	G	GCATTT	7.742e^-6	0.591	INTRON A2bp1
3L	17612801	3L_17612801_SNP [dm3] 3L_17619701_SNP [dm6]	C	T	8.017e^-6	0.591	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	10503050	3L_10503050_SNP [dm3] 3L_10509950_SNP [dm6]	T	C	8.354e^-6	0.591	INTRON A2bp1
2L	6910100	2L_6910100_SNP [dm3] 2L_6910100_SNP [dm6]	T	C	8.840e^-6	0.591	SYNONYMOUS_CODING Rat1 DOWNSTREAM Wee1	TF binding site mE1_TFBS_sens
3R	14016269	3R_14016269_SNP [dm3] 3R_18190547_SNP [dm6]	C	T	8.877e^-6	0.591	SYNONYMOUS_CODING MED17 DOWNSTREAM CG14313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2936372	2L_2936372_SNP [dm3] 2L_2936372_SNP [dm6]	T	G	8.941e^-6	0.591	INTRON lilli
X	18065438	X_18065438_SNP [dm3] X_18171405_SNP [dm6]	C	T	9.662e^-6	0.591	UTR_3_PRIME Frq1
3L	10503022	3L_10503022_SNP [dm3] 3L_10509922_SNP [dm6]	A	T	1.006e^-5	0.591	INTRON A2bp1
2L	10721693	2L_10721693_SNP [dm3] 2L_10721693_SNP [dm6]	C	A	1.055e^-5	0.591	INTERGENIC
3L	4313227	3L_4313227_SNP [dm3] 3L_4313227_SNP [dm6]	A	C	1.065e^-5	0.591	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26238174	3R_26238174_SNP [dm3] 3R_30412452_SNP [dm6]	G	A	1.071e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25520265	3R_25520265_SNP [dm3] 3R_29694543_SNP [dm6]	G	A	1.093e^-5	0.591	INTRON dmrt99B
3R	26238173	3R_26238173_SNP [dm3] 3R_30412451_SNP [dm6]	T	C	1.100e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8974423	3L_8974423_SNP [dm3] 3L_8981323_SNP [dm6]	T	G	1.161e^-5	0.591	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
2R	20173752	2R_20173752_SNP [dm3] 2R_24286229_SNP [dm6]	G	A	1.163e^-5	0.591	INTRON nvy	TF binding site mE1_TFBS_chinmo
3L	5606582	3L_5606582_SNP [dm3] 3L_5613482_SNP [dm6]	G	A	1.178e^-5	0.591	INTERGENIC
3R	10420289	3R_10420289_SNP [dm3] 3R_14594567_SNP [dm6]	A	T	1.186e^-5	0.591	INTRON stumps	regulatory region REDfly_CRMs
3R	9226136	3R_9226136_DEL [dm3] 3R_13400414_DEL [dm6]	TTAGTTAT	T	1.192e^-5	0.591	INTRON CG9796
X	14217582	X_14217582_SNP [dm3] X_14323549_SNP [dm6]	A	G	1.226e^-5	0.591	INTRON dpr8
3R	20608213	3R_20608213_SNP [dm3] 3R_24782491_SNP [dm6]	T	G	1.246e^-5	0.591	NON_SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad
2L	9396702	2L_9396702_SNP [dm3] 2L_9396702_SNP [dm6]	C	T	1.277e^-5	0.591	DOWNSTREAM CG4438 INTRON Shawl
2R	10580084	2R_10580084_SNP [dm3] 2R_14692579_SNP [dm6]	C	T	1.312e^-5	0.591	INTRON mspo
X	7969009	X_7969009_SNP [dm3] X_8074976_SNP [dm6]	T	C	1.324e^-5	0.591	SYNONYMOUS_CODING Upf2 UPSTREAM CG1571	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18275370	2L_18275370_SNP [dm3] 2L_18275370_SNP [dm6]	C	T	1.371e^-5	0.598	INTRON CG42750
X	14217587	X_14217587_SNP [dm3] X_14323554_SNP [dm6]	G	C	1.408e^-5	0.6	INTRON dpr8
2L	2708746	2L_2708746_SNP [dm3] 2L_2708746_SNP [dm6]	A	G	1.478e^-5	0.615	INTRON CG31690
3R	25520296	3R_25520296_SNP [dm3] 3R_29694574_SNP [dm6]	T	C	1.508e^-5	0.615	INTRON dmrt99B
X	11353524	X_11353524_SNP [dm3] X_11459491_SNP [dm6]	C	T	1.559e^-5	0.622	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2L	12093598	2L_12093598_SNP [dm3] 2L_12093598_SNP [dm6]	G	A	1.695e^-5	0.662	UPSTREAM Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18264634	2R_18264634_SNP [dm3] 2R_22377129_SNP [dm6]	G	A	1.811e^-5	0.684	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
3L	3591606	3L_3591606_SNP [dm3] 3L_3591606_SNP [dm6]	T	C	1.823e^-5	0.684	INTRON Eip63E
2L	3002173	2L_3002173_SNP [dm3] 2L_3002173_SNP [dm6]	A	T	1.940e^-5	0.7	INTRON CG17265
2R	17618532	2R_17618532_INS [dm3] 2R_21731027_INS [dm6]	T	TT	1.940e^-5	0.7	INTERGENIC
3L	4313226	3L_4313226_SNP [dm3] 3L_4313226_SNP [dm6]	A	T	2.032e^-5	0.711	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10503036	3L_10503036_SNP [dm3] 3L_10509936_SNP [dm6]	T	A	2.075e^-5	0.711	INTRON A2bp1
3L	8974628	3L_8974628_SNP [dm3] 3L_8981528_SNP [dm6]	G	C	2.100e^-5	0.711	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
2R	20173695	2R_20173695_SNP [dm3] 2R_24286172_SNP [dm6]	C	G	2.123e^-5	0.711	INTRON nvy	TF binding site mE1_TFBS_chinmo
3R	19919361	3R_19919361_SNP [dm3] 3R_24093639_SNP [dm6]	C	G	2.219e^-5	0.73	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3R	25603092	3R_25603092_SNP [dm3] 3R_29777370_SNP [dm6]	G	A	2.306e^-5	0.74	INTRON kay	TF binding site BDTNP1_TFBS_z
3R	19919356	3R_19919356_SNP [dm3] 3R_24093634_SNP [dm6]	A	G	2.326e^-5	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3R	24508657	3R_24508657_SNP [dm3] 3R_28682935_SNP [dm6]	G	A	2.472e^-5	0.74	INTRON CG9990	TF binding site BDTNP1_TFBS_z
X	14223693	X_14223693_SNP [dm3] X_14329660_SNP [dm6]	A	G	2.534e^-5	0.74	INTRON dpr8
X	2214175	X_2214175_INS [dm3] X_2320142_INS [dm6]	G	GCTGAG	2.546e^-5	0.74	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4313231	3L_4313231_SNP [dm3] 3L_4313231_SNP [dm6]	T	A	2.561e^-5	0.74	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	2936925	X_2936925_SNP [dm3] X_3042892_SNP [dm6]	T	G	2.661e^-5	0.74	INTRON kirre
2L	21793557	2L_21793557_SNP [dm3] 2L_21793557_SNP [dm6]	G	T	2.765e^-5	0.74	INTRON CG31612	TF binding site BDTNP1_TFBS_z
2R	16892064	2R_16892064_SNP [dm3] 2R_21004559_SNP [dm6]	C	T	2.784e^-5	0.74	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18065437	X_18065437_SNP [dm3] X_18171404_SNP [dm6]	C	T	2.844e^-5	0.74	UTR_3_PRIME Frq1
2L	17890074	2L_17890074_SNP [dm3] 2L_17890074_SNP [dm6]	C	T	2.893e^-5	0.74	INTERGENIC
3L	4717977	3L_4717977_SNP [dm3] 3L_4717977_SNP [dm6]	C	G	2.963e^-5	0.74	INTRON RhoGEF64C
X	19610876	X_19610876_SNP [dm3] X_19716843_SNP [dm6]	A	T	3.015e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16613801	X_16613801_SNP [dm3] X_16719768_SNP [dm6]	G	A	3.038e^-5	0.74	INTRON CG34325
X	19610872	X_19610872_SNP [dm3] X_19716839_SNP [dm6]	T	C	3.105e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7263994	2L_7263994_SNP [dm3] 2L_7263994_SNP [dm6]	C	T	3.166e^-5	0.74	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9413152	2L_9413152_SNP [dm3] 2L_9413152_SNP [dm6]	G	A	3.194e^-5	0.74	INTRON Shawl
3L	10300434	3L_10300434_SNP [dm3] 3L_10307334_SNP [dm6]	C	A	3.255e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18710973	2R_18710973_SNP [dm3] 2R_22823450_SNP [dm6]	A	G	3.265e^-5	0.74	NON_SYNONYMOUS_CODING CG42284	TF binding site mE1_TFBS_chinmo
X	14219696	X_14219696_SNP [dm3] X_14325663_SNP [dm6]	A	G	3.322e^-5	0.74	INTRON dpr8
3R	9610066	3R_9610066_SNP [dm3] 3R_13784344_SNP [dm6]	T	G	3.404e^-5	0.74	NON_SYNONYMOUS_CODING Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4313230	3L_4313230_SNP [dm3] 3L_4313230_SNP [dm6]	T	A	3.435e^-5	0.74	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9312331	3R_9312331_INS [dm3] 3R_13486609_INS [dm6]	T	TT	3.442e^-5	0.74	INTERGENIC
2R	21095619	2R_21095619_SNP [dm3] 2R_25208096_SNP [dm6]	T	C	3.459e^-5	0.74	INTRON CG9380
2L	17890082	2L_17890082_SNP [dm3] 2L_17890082_SNP [dm6]	A	G	3.483e^-5	0.74	INTERGENIC
X	3559606	X_3559606_SNP [dm3] X_3665573_SNP [dm6]	T	A	3.547e^-5	0.74	UTR_3_PRIME AstA-R1
2L	21815305	2L_21815305_SNP [dm3] 2L_21815305_SNP [dm6]	C	A	3.549e^-5	0.74	INTERGENIC
2L	10098800	2L_10098800_SNP [dm3] 2L_10098800_SNP [dm6]	A	G	3.604e^-5	0.74	INTRON CG34109 & 1 other
2R	17603473	2R_17603473_SNP [dm3] 2R_21715968_SNP [dm6]	C	T	3.669e^-5	0.74	UTR_3_PRIME HmgD DOWNSTREAM Tango11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10584402	2R_10584402_DEL [dm3] 2R_14696897_DEL [dm6]	ATGCAAGCATCATAA...	A	3.670e^-5	0.74	INTRON mspo
2L	12397204	2L_12397204_SNP [dm3] 2L_12397204_SNP [dm6]	A	T	3.684e^-5	0.74	UTR_3_PRIME bru-2
2R	18603310	2R_18603310_SNP [dm3] 2R_22715805_SNP [dm6]	T	C	3.685e^-5	0.74	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
X	2220271	X_2220271_SNP [dm3] X_2326238_SNP [dm6]	C	T	3.780e^-5	0.74	UPSTREAM CG14050 & 1 other INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20607158	3R_20607158_SNP [dm3] 3R_24781436_SNP [dm6]	G	A	3.892e^-5	0.74	INTRON CG42331	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	2944848	X_2944848_SNP [dm3] X_3050815_SNP [dm6]	G	A	3.922e^-5	0.74	INTRON kirre
X	2937656	X_2937656_SNP [dm3] X_3043623_SNP [dm6]	T	C	3.962e^-5	0.74	INTRON kirre
2L	10722478	2L_10722478_SNP [dm3] 2L_10722478_SNP [dm6]	A	T	4.018e^-5	0.74	INTERGENIC
X	3559607	X_3559607_SNP [dm3] X_3665574_SNP [dm6]	C	A	4.058e^-5	0.74	UTR_3_PRIME AstA-R1
X	2944197	X_2944197_SNP [dm3] X_3050164_SNP [dm6]	A	T	4.082e^-5	0.74	INTRON kirre
2L	21746983	2L_21746983_SNP [dm3] 2L_21746983_SNP [dm6]	A	T	4.109e^-5	0.74	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3179249	2L_3179249_SNP [dm3] 2L_3179249_SNP [dm6]	G	T	4.226e^-5	0.74	INTRON CG34393
X	2944225	X_2944225_SNP [dm3] X_3050192_SNP [dm6]	T	A	4.238e^-5	0.74	INTRON kirre
2L	17882573	2L_17882573_SNP [dm3] 2L_17882573_SNP [dm6]	T	C	4.264e^-5	0.74	INTERGENIC
3L	5249505	3L_5249505_SNP [dm3] 3L_5256405_SNP [dm6]	C	T	4.271e^-5	0.74	INTRON shep
2L	2936376	2L_2936376_SNP [dm3] 2L_2936376_SNP [dm6]	G	A	4.355e^-5	0.74	INTRON lilli
2R	6263633	2R_6263633_SNP [dm3] 2R_10376128_SNP [dm6]	T	G	4.373e^-5	0.74	DOWNSTREAM Ir47b & 1 other INTRON CG42732
X	2944057	X_2944057_SNP [dm3] X_3050024_SNP [dm6]	A	T	4.393e^-5	0.74	INTRON kirre
2L	1671367	2L_1671367_SNP [dm3] 2L_1671367_SNP [dm6]	A	G	4.450e^-5	0.74	INTRON chinmo
2R	6394234	2R_6394234_SNP [dm3] 2R_10506729_SNP [dm6]	T	C	4.482e^-5	0.74	DOWNSTREAM lola INTRON lola
3R	25299992	3R_25299992_SNP [dm3] 3R_29474270_SNP [dm6]	C	T	4.495e^-5	0.74	INTRON Ptp99A
3L	8033392	3L_8033392_SNP [dm3] 3L_8040292_SNP [dm6]	T	C	4.496e^-5	0.74	INTRON nmo
2R	4577936	2R_4577936_SNP [dm3] 2R_8690431_SNP [dm6]	G	T	4.517e^-5	0.74	INTERGENIC
3L	4313221	3L_4313221_SNP [dm3] 3L_4313221_SNP [dm6]	A	T	4.523e^-5	0.74	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9226941	3R_9226941_SNP [dm3] 3R_13401219_SNP [dm6]	G	T	4.578e^-5	0.74	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4620457	X_4620457_SNP [dm3] X_4726424_SNP [dm6]	C	T	4.628e^-5	0.74	SPLICE_SITE_REGION Proc-R INTRON Proc-R	TF binding site mE1_TFBS_chinmo
2R	4612763	2R_4612763_SNP [dm3] 2R_8725258_SNP [dm6]	G	T	4.639e^-5	0.74	DOWNSTREAM snoRNA:gcl-a INTRON gcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	19585112	3R_19585112_SNP [dm3] 3R_23759390_SNP [dm6]	C	A	4.749e^-5	0.74	NON_SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site mE1_TFBS_sens
X	4620858	X_4620858_SNP [dm3] X_4726825_SNP [dm6]	T	A	4.794e^-5	0.74	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	9017621	X_9017621_DEL [dm3] X_9123588_DEL [dm6]	AGT	A	4.809e^-5	0.74	UTR_3_PRIME fend
2R	3812654	2R_3812654_SNP [dm3] 2R_7925149_SNP [dm6]	A	T	4.836e^-5	0.74	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	25717033	3R_25717033_SNP [dm3] 3R_29891311_SNP [dm6]	G	C	4.837e^-5	0.74	INTRON CG31038
X	14217574	X_14217574_SNP [dm3] X_14323541_SNP [dm6]	G	A	4.849e^-5	0.74	INTRON dpr8
2L	17896477	2L_17896477_SNP [dm3] 2L_17896477_SNP [dm6]	A	C	4.900e^-5	0.74	INTERGENIC
2R	4612077	2R_4612077_DEL [dm3] 2R_8724572_DEL [dm6]	CATCC	C	4.969e^-5	0.74	UPSTREAM CG14767 & 1 other INTRON gcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7782280	3L_7782280_SNP [dm3] 3L_7789180_SNP [dm6]	T	G	4.978e^-5	0.74	INTRON CG32369
3L	10604696	3L_10604696_SNP [dm3] 3L_10611596_SNP [dm6]	A	T	4.992e^-5	0.74	INTERGENIC
3R	19919315	3R_19919315_SNP [dm3] 3R_24093593_SNP [dm6]	G	A	4.998e^-5	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9013089	3R_9013089_SNP [dm3] 3R_13187367_SNP [dm6]	C	T	5.184e^-5	0.74	UPSTREAM CG8508 INTERGENIC
3L	17607665	3L_17607665_SNP [dm3] 3L_17614565_SNP [dm6]	C	A	5.290e^-5	0.74	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	21095572	2R_21095572_DEL [dm3] 2R_25208049_DEL [dm6]	AA	A	5.293e^-5	0.74	INTRON CG9380
2L	21747097	2L_21747097_SNP [dm3] 2L_21747097_SNP [dm6]	C	A	5.295e^-5	0.74	SYNONYMOUS_CODING step INTRON step	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1483610	2L_1483610_DEL [dm3] 2L_1483610_DEL [dm6]	AAGAACAAATA...	A	5.366e^-5	0.74	INTERGENIC
3L	2966594	3L_2966594_SNP [dm3] 3L_2966594_SNP [dm6]	G	A	5.423e^-5	0.74	INTERGENIC
3L	5606499	3L_5606499_SNP [dm3] 3L_5613399_SNP [dm6]	T	A	5.466e^-5	0.74	INTERGENIC
3L	5606514	3L_5606514_SNP [dm3] 3L_5613414_SNP [dm6]	A	T	5.568e^-5	0.74	INTERGENIC
2R	4070699	2R_4070699_SNP [dm3] 2R_8183194_SNP [dm6]	T	A	5.594e^-5	0.74	INTRON LRP1
3L	6780134	3L_6780134_SNP [dm3] 3L_6787034_SNP [dm6]	C	A	5.683e^-5	0.74	EXON CR45759
2R	18264661	2R_18264661_SNP [dm3] 2R_22377156_SNP [dm6]	T	C	5.753e^-5	0.74	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
X	8449016	X_8449016_DEL [dm3] X_8554983_DEL [dm6]	TT	T	5.754e^-5	0.74	UTR_3_PRIME Nrg DOWNSTREAM IntS4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3R	7088155	3R_7088155_SNP [dm3] 3R_11262433_SNP [dm6]	C	T	5.775e^-5	0.74	INTERGENIC
3R	17412568	3R_17412568_SNP [dm3] 3R_21586846_SNP [dm6]	G	T	5.805e^-5	0.74	INTRON InR
2L	17884011	2L_17884011_INS [dm3] 2L_17884011_INS [dm6]	C	CAT	5.826e^-5	0.74	INTERGENIC
2L	9839544	2L_9839544_SNP [dm3] 2L_9839544_SNP [dm6]	T	G	5.919e^-5	0.74	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
3L	5249071	3L_5249071_SNP [dm3] 3L_5255971_SNP [dm6]	G	A	5.940e^-5	0.74	INTRON shep
3L	6780141	3L_6780141_SNP [dm3] 3L_6787041_SNP [dm6]	G	A	5.950e^-5	0.74	EXON CR45759
2L	1870727	2L_1870727_SNP [dm3] 2L_1870727_SNP [dm6]	T	A	5.953e^-5	0.74	SYNONYMOUS_CODING CG7295 INTRON CG31663
2L	5904495	2L_5904495_DEL [dm3] 2L_5904495_DEL [dm6]	AGTGGAAAGATAACGAAAAA...	A	6.161e^-5	0.74	DOWNSTREAM CR43808 INTRON CG9021
2L	18729399	2L_18729399_SNP [dm3] 2L_18729399_SNP [dm6]	A	G	6.307e^-5	0.74	INTRON CG10348
3R	26068857	3R_26068857_SNP [dm3] 3R_30243135_SNP [dm6]	G	T	6.355e^-5	0.74	SYNONYMOUS_CODING CG9737 DOWNSTREAM CG9733
3L	5642397	3L_5642397_SNP [dm3] 3L_5649297_SNP [dm6]	T	A	6.376e^-5	0.74	UTR_3_PRIME Blimp-1 DOWNSTREAM Blimp-1
X	14217721	X_14217721_SNP [dm3] X_14323688_SNP [dm6]	T	C	6.422e^-5	0.74	INTRON dpr8
3R	25833077	3R_25833077_SNP [dm3] 3R_30007355_SNP [dm6]	G	A	6.424e^-5	0.74	SYNONYMOUS_CODING CG7912 INTRON Nlp
2L	10721655	2L_10721655_SNP [dm3] 2L_10721655_SNP [dm6]	G	T	6.468e^-5	0.74	INTERGENIC
2L	14059489	2L_14059489_SNP [dm3] 2L_14059489_SNP [dm6]	C	A	6.546e^-5	0.74	INTRON nAChRalpha5
3L	5274571	3L_5274571_SNP [dm3] 3L_5281471_SNP [dm6]	A	T	6.612e^-5	0.74	INTERGENIC
2R	6896980	2R_6896980_SNP [dm3] 2R_11009475_SNP [dm6]	A	G	6.680e^-5	0.74	INTRON luna	TF binding site mE1_TFBS_inv
3R	19233214	3R_19233214_INS [dm3] 3R_23407492_INS [dm6]	T	TT	6.706e^-5	0.74	DOWNSTREAM Ir94e INTERGENIC
2R	17605214	2R_17605214_SNP [dm3] 2R_21717709_SNP [dm6]	A	G	6.771e^-5	0.74	UPSTREAM CG30398 DOWNSTREAM HmgD INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3325187	X_3325187_SNP [dm3] X_3431154_SNP [dm6]	G	C	6.800e^-5	0.74	INTRON CR44999 & 1 other
2R	4493441	2R_4493441_SNP [dm3] 2R_8605936_SNP [dm6]	C	T	6.806e^-5	0.74	INTRON rgr	TF binding site mE1_TFBS_cad
2R	4611072	2R_4611072_DEL [dm3] 2R_8723567_DEL [dm6]	TTTAGGT	T	6.837e^-5	0.74	UPSTREAM gcl & 1 other INTRON CG14767	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18729354	2L_18729354_SNP [dm3] 2L_18729354_SNP [dm6]	A	G	6.865e^-5	0.74	INTRON CG10348
X	5939648	X_5939648_SNP [dm3] X_6045615_SNP [dm6]	C	T	6.951e^-5	0.74	INTRON CG5937	TF binding site mE1_TFBS_chinmo
X	4620839	X_4620839_SNP [dm3] X_4726806_SNP [dm6]	A	T	6.960e^-5	0.74	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	4620840	X_4620840_SNP [dm3] X_4726807_SNP [dm6]	G	T	6.960e^-5	0.74	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	14224397	X_14224397_SNP [dm3] X_14330364_SNP [dm6]	G	A	7.079e^-5	0.74	INTRON dpr8
3R	18636355	3R_18636355_SNP [dm3] 3R_22810633_SNP [dm6]	T	G	7.173e^-5	0.74	INTERGENIC
X	18376258	X_18376258_INS [dm3] X_18482225_INS [dm6]	A	ACACA	7.195e^-5	0.74	INTRON Hayan	TF binding site mE1_TFBS_inv
2R	9969179	2R_9969179_INS [dm3] 2R_14081674_INS [dm6]	G	GCTTAG	7.213e^-5	0.74	INTRON Prosap
2L	11637759	2L_11637759_SNP [dm3] 2L_11637759_SNP [dm6]	A	T	7.263e^-5	0.74	INTERGENIC
X	10441153	X_10441153_SNP [dm3] X_10547120_SNP [dm6]	G	A	7.274e^-5	0.74	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10722534	2L_10722534_SNP [dm3] 2L_10722534_SNP [dm6]	A	T	7.317e^-5	0.74	INTERGENIC
2L	10722557	2L_10722557_SNP [dm3] 2L_10722557_SNP [dm6]	A	T	7.317e^-5	0.74	INTERGENIC
3R	14611051	3R_14611051_SNP [dm3] 3R_18785329_SNP [dm6]	C	T	7.322e^-5	0.74	INTRON CG7720
2L	9803769	2L_9803769_DEL [dm3] 2L_9803769_DEL [dm6]	GAT	G	7.344e^-5	0.74	INTRON nAChRalpha6
2L	9838804	2L_9838804_SNP [dm3] 2L_9838804_SNP [dm6]	A	C	7.413e^-5	0.74	INTRON nAChRalpha6
2R	18194680	2R_18194680_SNP [dm3] 2R_22307175_SNP [dm6]	G	C	7.440e^-5	0.74	INTRON wdp
3R	13441602	3R_13441602_SNP [dm3] 3R_17615880_SNP [dm6]	A	G	7.471e^-5	0.74	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	24838534	3R_24838534_SNP [dm3] 3R_29012812_SNP [dm6]	A	T	7.471e^-5	0.74	INTRON wat
X	10440926	X_10440926_SNP [dm3] X_10546893_SNP [dm6]	G	T	7.504e^-5	0.74	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10722546	2L_10722546_SNP [dm3] 2L_10722546_SNP [dm6]	C	A	7.514e^-5	0.74	INTERGENIC
3R	9498965	3R_9498965_SNP [dm3] 3R_13673243_SNP [dm6]	A	G	7.580e^-5	0.74	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	25979351	3R_25979351_SNP [dm3] 3R_30153629_SNP [dm6]	G	A	7.586e^-5	0.74	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	9187561	3R_9187561_SNP [dm3] 3R_13361839_SNP [dm6]	T	C	7.630e^-5	0.74	UTR_3_PRIME poly DOWNSTREAM poly
2L	16734675	2L_16734675_SNP [dm3] 2L_16734675_SNP [dm6]	T	C	7.636e^-5	0.74	SYNONYMOUS_CODING glu
X	14216527	X_14216527_SNP [dm3] X_14322494_SNP [dm6]	T	C	7.651e^-5	0.74	UTR_5_PRIME dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10722537	2L_10722537_SNP [dm3] 2L_10722537_SNP [dm6]	G	C	7.665e^-5	0.74	INTERGENIC
X	18065671	X_18065671_SNP [dm3] X_18171638_SNP [dm6]	C	T	7.678e^-5	0.74	UTR_3_PRIME Frq1
X	2200278	X_2200278_INS [dm3] X_2306245_INS [dm6]	A	ATTA	7.687e^-5	0.74	INTRON phl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	14336797	2L_14336797_SNP [dm3] 2L_14336797_SNP [dm6]	T	A	7.712e^-5	0.74	INTRON CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9804606	2L_9804606_SNP [dm3] 2L_9804606_SNP [dm6]	C	G	7.794e^-5	0.74	INTRON nAChRalpha6
X	14217470	X_14217470_SNP [dm3] X_14323437_SNP [dm6]	G	T	7.847e^-5	0.74	INTRON dpr8
2R	14098751	2R_14098751_INS [dm3] 2R_18211246_INS [dm6]	G	GG	7.856e^-5	0.74	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17882803	2L_17882803_SNP [dm3] 2L_17882803_SNP [dm6]	A	C	7.909e^-5	0.74	INTERGENIC
3R	10199285	3R_10199285_SNP [dm3] 3R_14373563_SNP [dm6]	G	A	8.014e^-5	0.74	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18679544	3R_18679544_SNP [dm3] 3R_22853822_SNP [dm6]	G	A	8.033e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9731382	3L_9731382_SNP [dm3] 3L_9738282_SNP [dm6]	T	G	8.213e^-5	0.74	SPLICE_SITE_REGION CG42268 INTRON CG42268
2L	9342249	2L_9342249_SNP [dm3] 2L_9342249_SNP [dm6]	T	A	8.223e^-5	0.74	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2L	12802174	2L_12802174_SNP [dm3] 2L_12802174_SNP [dm6]	T	G	8.378e^-5	0.74	INTERGENIC
2R	13985526	2R_13985526_SNP [dm3] 2R_18098021_SNP [dm6]	G	A	8.379e^-5	0.74	SYNONYMOUS_CODING CG5098	TF binding site mE1_TFBS_sens
3R	19919301	3R_19919301_SNP [dm3] 3R_24093579_SNP [dm6]	T	G	8.402e^-5	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26067677	3R_26067677_SNP [dm3] 3R_30241955_SNP [dm6]	C	T	8.437e^-5	0.74	INTRON CG9737	TF binding site mE1_TFBS_HSA
3R	22599167	3R_22599167_SNP [dm3] 3R_26773445_SNP [dm6]	G	C	8.461e^-5	0.74	INTERGENIC
3L	7887270	3L_7887270_SNP [dm3] 3L_7894170_SNP [dm6]	T	A	8.500e^-5	0.74	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5525270	3L_5525270_SNP [dm3] 3L_5532170_SNP [dm6]	G	A	8.517e^-5	0.74	INTERGENIC
3L	16724023	3L_16724023_SNP [dm3] 3L_16730923_SNP [dm6]	T	G	8.527e^-5	0.74	UPSTREAM Dbp73D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7958890	3L_7958890_SNP [dm3] 3L_7965790_SNP [dm6]	A	G	8.555e^-5	0.74	INTERGENIC
X	10438077	X_10438077_SNP [dm3] X_10544044_SNP [dm6]	A	T	8.650e^-5	0.74	INTRON spri
2L	6238746	2L_6238746_SNP [dm3] 2L_6238746_SNP [dm6]	C	A	8.715e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	17610836	3L_17610836_SNP [dm3] 3L_17617736_SNP [dm6]	A	T	8.740e^-5	0.74	INTRON Eip74EF
X	16479797	X_16479797_SNP [dm3] X_16585764_SNP [dm6]	T	A	8.809e^-5	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3R	10552813	3R_10552813_SNP [dm3] 3R_14727091_SNP [dm6]	T	G	8.887e^-5	0.74	INTRON CG7530
3R	25133292	3R_25133292_SNP [dm3] 3R_29307570_SNP [dm6]	A	G	8.916e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9197600	3R_9197600_SNP [dm3] 3R_13371878_SNP [dm6]	A	G	8.925e^-5	0.74	UTR_5_PRIME Lip3 UPSTREAM CG34309
3L	16724026	3L_16724026_SNP [dm3] 3L_16730926_SNP [dm6]	T	A	8.948e^-5	0.74	UPSTREAM Dbp73D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10015376	X_10015376_SNP [dm3] X_10121343_SNP [dm6]	C	T	9.012e^-5	0.74	DOWNSTREAM CR44894 INTRON RhoU & 1 other
3L	14692391	3L_14692391_SNP [dm3] 3L_14699291_SNP [dm6]	G	A	9.035e^-5	0.74	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG17177 INTRON ome
3R	22233658	3R_22233658_SNP [dm3] 3R_26407936_SNP [dm6]	C	T	9.042e^-5	0.74	INTERGENIC
2R	4171242	2R_4171242_SNP [dm3] 2R_8283737_SNP [dm6]	G	A	9.047e^-5	0.74	INTERGENIC
3R	17247051	3R_17247051_SNP [dm3] 3R_21421329_SNP [dm6]	C	A	9.053e^-5	0.74	INTRON lbl	TF binding site mE1_TFBS_cad
2L	9342398	2L_9342398_SNP [dm3] 2L_9342398_SNP [dm6]	C	A	9.060e^-5	0.74	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2R	17661174	2R_17661174_SNP [dm3] 2R_21773669_SNP [dm6]	A	G	9.069e^-5	0.74	SYNONYMOUS_CODING CG4021
3L	17597624	3L_17597624_SNP [dm3] 3L_17604524_SNP [dm6]	G	C	9.092e^-5	0.74	INTRON Eip74EF
2L	16731085	2L_16731085_SNP [dm3] 2L_16731085_SNP [dm6]	A	T	9.143e^-5	0.74	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
3L	8974027	3L_8974027_SNP [dm3] 3L_8980927_SNP [dm6]	G	A	9.192e^-5	0.74	UPSTREAM CG13314 INTERGENIC
2L	10705613	2L_10705613_SNP [dm3] 2L_10705613_SNP [dm6]	A	G	9.209e^-5	0.74	DOWNSTREAM CG6415 INTRON Lip2
3L	10503136	3L_10503136_SNP [dm3] 3L_10510036_SNP [dm6]	C	A	9.326e^-5	0.74	INTRON A2bp1
2L	9393529	2L_9393529_SNP [dm3] 2L_9393529_SNP [dm6]	A	G	9.344e^-5	0.74	INTRON Shawl
2L	7264155	2L_7264155_SNP [dm3] 2L_7264155_SNP [dm6]	A	G	9.371e^-5	0.74	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2L	1960704	2L_1960704_SNP [dm3] 2L_1960704_SNP [dm6]	T	C	9.377e^-5	0.74	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	797524	3R_797524_SNP [dm3] 3R_4971802_SNP [dm6]	G	A	9.411e^-5	0.74	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe
3R	5118951	3R_5118951_SNP [dm3] 3R_9293229_SNP [dm6]	G	C	9.448e^-5	0.74	DOWNSTREAM CG8861 INTERGENIC
3L	5530474	3L_5530474_SNP [dm3] 3L_5537374_SNP [dm6]	C	T	9.514e^-5	0.74	INTERGENIC
3L	5523493	3L_5523493_SNP [dm3] 3L_5530393_SNP [dm6]	C	T	9.524e^-5	0.74	INTERGENIC
2L	9342378	2L_9342378_SNP [dm3] 2L_9342378_SNP [dm6]	T	A	9.528e^-5	0.74	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3L	10608513	3L_10608513_SNP [dm3] 3L_10615413_SNP [dm6]	A	C	9.691e^-5	0.74	INTERGENIC
2L	22339456	2L_22339456_SNP [dm3] 2L_22339456_SNP [dm6]	G	C	9.735e^-5	0.74	INTRON CG17018	transposable element FlyBase
3L	3591602	3L_3591602_SNP [dm3] 3L_3591602_SNP [dm6]	T	C	9.735e^-5	0.74	INTRON Eip63E
2R	11531514	2R_11531514_SNP [dm3] 2R_15644009_SNP [dm6]	C	A	9.758e^-5	0.74	INTRON CG42524
3R	9226183	3R_9226183_SNP [dm3] 3R_13400461_SNP [dm6]	T	A	9.764e^-5	0.74	INTRON CG9796
3R	19919350	3R_19919350_SNP [dm3] 3R_24093628_SNP [dm6]	A	G	9.782e^-5	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18746859	2L_18746859_SNP [dm3] 2L_18746859_SNP [dm6]	G	T	9.844e^-5	0.74	INTERGENIC
2L	18729725	2L_18729725_SNP [dm3] 2L_18729725_SNP [dm6]	G	A	9.962e^-5	0.74	INTRON CG10348
2L	21748252	2L_21748252_SNP [dm3] 2L_21748252_SNP [dm6]	C	T	1.002e^-4	0.74	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19611014	X_19611014_SNP [dm3] X_19716981_SNP [dm6]	C	T	1.005e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7973995	X_7973995_SNP [dm3] X_8079962_SNP [dm6]	G	T	1.006e^-4	0.74	INTRON CG2254
2L	4005846	2L_4005846_SNP [dm3] 2L_4005846_SNP [dm6]	C	T	1.012e^-4	0.74	UPSTREAM CG15423 DOWNSTREAM CG15422 INTERGENIC
2R	6956724	2R_6956724_SNP [dm3] 2R_11069219_SNP [dm6]	C	T	1.013e^-4	0.74	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	10167870	3L_10167870_SNP [dm3] 3L_10174770_SNP [dm6]	C	T	1.013e^-4	0.74	INTRON dpr10
3R	18550972	3R_18550972_SNP [dm3] 3R_22725250_SNP [dm6]	C	G	1.021e^-4	0.74	SYNONYMOUS_CODING CG4813 UPSTREAM Irp-1A DOWNSTREAM CR45648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15389236	2R_15389236_SNP [dm3] 2R_19501731_SNP [dm6]	C	T	1.028e^-4	0.74	UPSTREAM CG16926 INTERGENIC
3R	23947382	3R_23947382_DEL [dm3] 3R_28121660_DEL [dm6]	AA	A	1.033e^-4	0.74	INTERGENIC
3L	6992397	3L_6992397_SNP [dm3] 3L_6999297_SNP [dm6]	T	C	1.043e^-4	0.74	INTRON Mp
X	4620823	X_4620823_DEL [dm3] X_4726790_DEL [dm6]	GCATTGAAAAG...	G	1.043e^-4	0.74	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
X	7082163	X_7082163_DEL [dm3] X_7188130_DEL [dm6]	AA	A	1.049e^-4	0.74	INTRON CG9650 & 1 other
3R	19919317	3R_19919317_SNP [dm3] 3R_24093595_SNP [dm6]	A	T	1.057e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10721637	2L_10721637_SNP [dm3] 2L_10721637_SNP [dm6]	A	T	1.061e^-4	0.74	INTERGENIC
2L	12802184	2L_12802184_SNP [dm3] 2L_12802184_SNP [dm6]	A	G	1.067e^-4	0.74	INTERGENIC
3R	19919107	3R_19919107_SNP [dm3] 3R_24093385_SNP [dm6]	T	A	1.069e^-4	0.74	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5530524	3L_5530524_SNP [dm3] 3L_5537424_SNP [dm6]	A	T	1.083e^-4	0.74	DOWNSTREAM CG10625 INTERGENIC
X	10027021	X_10027021_SNP [dm3] X_10132988_SNP [dm6]	A	G	1.091e^-4	0.74	INTRON CR44894 & 1 other
3R	19919314	3R_19919314_SNP [dm3] 3R_24093592_SNP [dm6]	T	A	1.094e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12925228	X_12925228_SNP [dm3] X_13031195_SNP [dm6]	A	C	1.100e^-4	0.74	INTRON rad
2L	21747825	2L_21747825_SNP [dm3] 2L_21747825_SNP [dm6]	C	A	1.101e^-4	0.74	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16479829	X_16479829_SNP [dm3] X_16585796_SNP [dm6]	G	A	1.102e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3L	18657172	3L_18657172_SNP [dm3] 3L_18664072_SNP [dm6]	C	T	1.107e^-4	0.74	INTRON MYPT-75D
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	1.109e^-4	0.74	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10098848	2L_10098848_INS [dm3] 2L_10098848_INS [dm6]	A	AA	1.110e^-4	0.74	INTRON CG34109 & 1 other
X	16479796	X_16479796_SNP [dm3] X_16585763_SNP [dm6]	T	A	1.111e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
2R	10877612	2R_10877612_SNP [dm3] 2R_14990107_SNP [dm6]	T	C	1.113e^-4	0.74	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
2L	1671152	2L_1671152_SNP [dm3] 2L_1671152_SNP [dm6]	G	T	1.122e^-4	0.74	INTRON chinmo
2R	18264553	2R_18264553_SNP [dm3] 2R_22377048_SNP [dm6]	C	T	1.124e^-4	0.74	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
2L	15360821	2L_15360821_SNP [dm3] 2L_15360821_SNP [dm6]	C	G	1.124e^-4	0.74	DOWNSTREAM CG15258 INTERGENIC
2R	14830892	2R_14830892_SNP [dm3] 2R_18943387_SNP [dm6]	G	A	1.131e^-4	0.74	INTRON sano
2L	3179240	2L_3179240_SNP [dm3] 2L_3179240_SNP [dm6]	C	T	1.154e^-4	0.74	INTRON CG34393
3R	11674181	3R_11674181_SNP [dm3] 3R_15848459_SNP [dm6]	A	G	1.173e^-4	0.74	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
2R	20505463	2R_20505463_SNP [dm3] 2R_24617940_SNP [dm6]	C	T	1.173e^-4	0.74	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	20106043	2R_20106043_SNP [dm3] 2R_24218520_SNP [dm6]	T	C	1.184e^-4	0.74	INTRON CG30419
2L	8060527	2L_8060527_SNP [dm3] 2L_8060527_SNP [dm6]	A	T	1.192e^-4	0.74	INTRON poe
X	10437383	X_10437383_SNP [dm3] X_10543350_SNP [dm6]	A	G	1.195e^-4	0.74	INTRON spri
2R	2496996	2R_2496996_SNP [dm3] 2R_6609491_SNP [dm6]	C	T	1.195e^-4	0.74	UPSTREAM jing INTRON jing	transposable element FlyBase
2L	10721907	2L_10721907_SNP [dm3] 2L_10721907_SNP [dm6]	G	T	1.198e^-4	0.74	INTERGENIC
2L	10721635	2L_10721635_SNP [dm3] 2L_10721635_SNP [dm6]	A	T	1.201e^-4	0.74	INTERGENIC
2L	8060528	2L_8060528_SNP [dm3] 2L_8060528_SNP [dm6]	T	A	1.203e^-4	0.74	INTRON poe
2L	4209784	2L_4209784_DEL [dm3] 2L_4209784_DEL [dm6]	CC	C	1.213e^-4	0.74	INTRON ft	TF binding site mE1_TFBS_inv
X	18065370	X_18065370_SNP [dm3] X_18171337_SNP [dm6]	G	A	1.229e^-4	0.74	UTR_3_PRIME Frq1
3L	10503135	3L_10503135_SNP [dm3] 3L_10510035_SNP [dm6]	T	C	1.232e^-4	0.74	INTRON A2bp1
3R	19919370	3R_19919370_SNP [dm3] 3R_24093648_SNP [dm6]	C	T	1.238e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3L	11311925	3L_11311925_SNP [dm3] 3L_11318825_SNP [dm6]	C	G	1.244e^-4	0.74	DOWNSTREAM CG6168 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	1935972	3L_1935972_SNP [dm3] 3L_1935972_SNP [dm6]	A	G	1.248e^-4	0.74	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11627082	2L_11627082_SNP [dm3] 2L_11627082_SNP [dm6]	C	T	1.255e^-4	0.74	DOWNSTREAM kek2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4313219	3L_4313219_SNP [dm3] 3L_4313219_SNP [dm6]	C	T	1.257e^-4	0.74	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17716128	2R_17716128_SNP [dm3] 2R_21828623_SNP [dm6]	A	G	1.261e^-4	0.74	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
3R	25647683	3R_25647683_SNP [dm3] 3R_29821961_SNP [dm6]	T	A	1.263e^-4	0.74	INTRON neo
X	9017888	X_9017888_SNP [dm3] X_9123855_SNP [dm6]	G	C	1.264e^-4	0.74	UTR_3_PRIME fend
2R	4183279	2R_4183279_SNP [dm3] 2R_8295774_SNP [dm6]	T	A	1.265e^-4	0.74	INTERGENIC
2L	11391599	2L_11391599_SNP [dm3] 2L_11391599_SNP [dm6]	C	T	1.268e^-4	0.74	INTRON CR43681	regulatory region REDfly_CRMs
2L	8192903	2L_8192903_SNP [dm3] 2L_8192903_SNP [dm6]	A	G	1.269e^-4	0.74	SYNONYMOUS_CODING CG8475 UTR_3_PRIME CG8475	TF binding site mE1_TFBS_cad
2L	10720160	2L_10720160_DEL [dm3] 2L_10720160_DEL [dm6]	ATGCGAA	A	1.272e^-4	0.74	INTERGENIC
3L	17026609	3L_17026609_SNP [dm3] 3L_17033509_SNP [dm6]	T	C	1.275e^-4	0.74	UPSTREAM CR45756 EXON CR43250	TF binding site BDTNP1_TFBS_dl
3R	10308969	3R_10308969_SNP [dm3] 3R_14483247_SNP [dm6]	G	T	1.280e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	3186468	X_3186468_SNP [dm3] X_3292435_SNP [dm6]	A	C	1.283e^-4	0.74	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17903867	2L_17903867_SNP [dm3] 2L_17903867_SNP [dm6]	T	G	1.289e^-4	0.74	UPSTREAM CR45333 INTERGENIC
2L	9027547	2L_9027547_SNP [dm3] 2L_9027547_SNP [dm6]	A	C	1.305e^-4	0.74	INTRON CG9582 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10721715	2L_10721715_SNP [dm3] 2L_10721715_SNP [dm6]	C	A	1.307e^-4	0.74	INTERGENIC
X	14219989	X_14219989_DEL [dm3] X_14325956_DEL [dm6]	CAGCCATACAAC...	C	1.308e^-4	0.74	INTRON dpr8
2L	3000434	2L_3000434_SNP [dm3] 2L_3000434_SNP [dm6]	G	A	1.308e^-4	0.74	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16835887	2L_16835887_SNP [dm3] 2L_16835887_SNP [dm6]	G	A	1.315e^-4	0.74	SYNONYMOUS_CODING CG13283	TF binding site mE1_TFBS_sens
3R	19136090	3R_19136090_SNP [dm3] 3R_23310368_SNP [dm6]	C	A	1.320e^-4	0.74	INTRON pnt
X	16479787	X_16479787_SNP [dm3] X_16585754_SNP [dm6]	T	G	1.322e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3L	6794167	3L_6794167_SNP [dm3] 3L_6801067_SNP [dm6]	C	T	1.322e^-4	0.74	INTERGENIC
2L	11627271	2L_11627271_SNP [dm3] 2L_11627271_SNP [dm6]	A	C	1.332e^-4	0.74	DOWNSTREAM kek2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16731091	2L_16731091_SNP [dm3] 2L_16731091_SNP [dm6]	T	G	1.335e^-4	0.74	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	3075302	2R_3075302_SNP [dm3] 2R_7187797_SNP [dm6]	G	A	1.343e^-4	0.74	INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens
3L	23051487	3L_23051487_SNP [dm3] 3L_23058387_SNP [dm6]	G	A	1.350e^-4	0.74	INTERGENIC	transposable element FlyBase
X	10441650	X_10441650_SNP [dm3] X_10547617_SNP [dm6]	T	A	1.351e^-4	0.74	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18062230	X_18062230_SNP [dm3] X_18168197_SNP [dm6]	G	C	1.356e^-4	0.74	INTRON Frq1
2R	1305234	2R_1305234_SNP [dm3] 2R_5417729_SNP [dm6]	G	A	1.356e^-4	0.74	INTRON laccase2	TF binding site BDTNP1_TFBS_dl
3L	11178935	3L_11178935_INS [dm3] 3L_11185835_INS [dm6]	G	GATTATCTTAGCG...	1.360e^-4	0.74	INTRON GlcAT-P
2R	3812727	2R_3812727_SNP [dm3] 2R_7925222_SNP [dm6]	A	G	1.366e^-4	0.74	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	1673181	2L_1673181_SNP [dm3] 2L_1673181_SNP [dm6]	A	G	1.371e^-4	0.74	INTRON chinmo
2R	4589635	2R_4589635_SNP [dm3] 2R_8702130_SNP [dm6]	T	C	1.372e^-4	0.74	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
3R	27431292	3R_27431292_SNP [dm3] 3R_31605570_SNP [dm6]	G	T	1.373e^-4	0.74	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	10721810	2L_10721810_SNP [dm3] 2L_10721810_SNP [dm6]	A	T	1.374e^-4	0.74	INTERGENIC
2L	12093590	2L_12093590_SNP [dm3] 2L_12093590_SNP [dm6]	C	A	1.388e^-4	0.74	UPSTREAM Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13441610	3R_13441610_DEL [dm3] 3R_17615888_DEL [dm6]	AC	T	1.393e^-4	0.74	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	14183208	3L_14183208_DEL [dm3] 3L_14190108_DEL [dm6]	CAATACTCAAAATTTCACTT...	C	1.396e^-4	0.74	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_Ubx
3L	22761747	3L_22761747_SNP [dm3] 3L_22768647_SNP [dm6]	A	G	1.397e^-4	0.74	INTRON SPoCk
2L	16041366	2L_16041366_SNP [dm3] 2L_16041366_SNP [dm6]	G	A	1.399e^-4	0.74	UTR_3_PRIME beat-Ic UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic
2L	4419528	2L_4419528_SNP [dm3] 2L_4419528_SNP [dm6]	G	T	1.403e^-4	0.74	UPSTREAM tRNA:CR31963 INTRON CG15431
3R	14105959	3R_14105959_SNP [dm3] 3R_18280237_SNP [dm6]	A	G	1.408e^-4	0.74	UPSTREAM CG7142 INTRON eIF-1A
2R	8937770	2R_8937770_SNP [dm3] 2R_13050265_SNP [dm6]	A	G	1.414e^-4	0.74	UPSTREAM CG13324 INTERGENIC
X	14222878	X_14222878_SNP [dm3] X_14328845_SNP [dm6]	A	T	1.415e^-4	0.74	INTRON dpr8
3R	19919378	3R_19919378_SNP [dm3] 3R_24093656_SNP [dm6]	C	A	1.416e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3L	1999043	3L_1999043_SNP [dm3] 3L_1999043_SNP [dm6]	G	A	1.417e^-4	0.74	INTERGENIC
2L	14884900	2L_14884900_INS [dm3] 2L_14884900_INS [dm6]	A	AACC	1.417e^-4	0.74	UPSTREAM CR45302 INTERGENIC
3L	13778703	3L_13778703_SNP [dm3] 3L_13785603_SNP [dm6]	A	G	1.419e^-4	0.74	INTRON bru-3
3R	13127367	3R_13127367_SNP [dm3] 3R_17301645_SNP [dm6]	G	A	1.439e^-4	0.74	INTERGENIC
3L	20929951	3L_20929951_SNP [dm3] 3L_20936851_SNP [dm6]	C	A	1.440e^-4	0.74	INTRON fng
X	3658294	X_3658294_SNP [dm3] X_3764261_SNP [dm6]	G	C	1.440e^-4	0.74	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9863835	3R_9863835_SNP [dm3] 3R_14038113_SNP [dm6]	T	G	1.445e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16237222	3L_16237222_SNP [dm3] 3L_16244122_SNP [dm6]	C	A	1.446e^-4	0.74	INTERGENIC
2R	13726480	2R_13726480_SNP [dm3] 2R_17838975_SNP [dm6]	T	A	1.451e^-4	0.74	INTRON grh	TF binding site BDTNP1_TFBS_da
2L	10721027	2L_10721027_SNP [dm3] 2L_10721027_SNP [dm6]	C	T	1.454e^-4	0.74	INTERGENIC
X	7943923	X_7943923_SNP [dm3] X_8049890_SNP [dm6]	T	G	1.455e^-4	0.74	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6394235	2R_6394235_SNP [dm3] 2R_10506730_SNP [dm6]	G	T	1.455e^-4	0.74	DOWNSTREAM lola INTRON lola
2L	10705607	2L_10705607_SNP [dm3] 2L_10705607_SNP [dm6]	C	T	1.458e^-4	0.74	DOWNSTREAM CG6415 INTRON Lip2
2R	16827923	2R_16827923_INS [dm3] 2R_20940418_INS [dm6]	G	GG	1.463e^-4	0.74	INTERGENIC
3R	26965728	3R_26965728_SNP [dm3] 3R_31140006_SNP [dm6]	C	T	1.464e^-4	0.74	INTRON Gycbeta100B
3L	3395125	3L_3395125_SNP [dm3] 3L_3395125_SNP [dm6]	A	C	1.474e^-4	0.74	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	2305164	X_2305164_SNP [dm3] X_2411131_SNP [dm6]	A	G	1.476e^-4	0.74	UPSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7780241	3L_7780241_SNP [dm3] 3L_7787141_SNP [dm6]	C	T	1.477e^-4	0.74	INTRON CG32369
2L	10721843	2L_10721843_DEL [dm3] 2L_10721843_DEL [dm6]	ATTAACATTATTATTAAATA...	A	1.485e^-4	0.74	INTERGENIC
3R	7317130	3R_7317130_DEL [dm3] 3R_11491408_DEL [dm6]	TC	T	1.489e^-4	0.74	INTERGENIC
X	18063420	X_18063420_INS [dm3] X_18169387_INS [dm6]	T	TGTGT	1.489e^-4	0.74	INTRON Frq1
2L	4712572	2L_4712572_SNP [dm3] 2L_4712572_SNP [dm6]	A	G	1.490e^-4	0.74	INTRON CG34351
3L	10177869	3L_10177869_SNP [dm3] 3L_10184769_SNP [dm6]	T	C	1.501e^-4	0.74	INTRON dpr10
2R	16718095	2R_16718095_DEL [dm3] 2R_20830590_DEL [dm6]	ACATATCTCTCAGTAACACT...	A	1.502e^-4	0.74	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	9838805	2L_9838805_DEL [dm3] 2L_9838805_DEL [dm6]	ATCTT	A	1.508e^-4	0.74	INTRON nAChRalpha6
X	16479769	X_16479769_SNP [dm3] X_16585736_SNP [dm6]	A	T	1.514e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
X	12377374	X_12377374_SNP [dm3] X_12483341_SNP [dm6]	C	T	1.515e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6262530	2R_6262530_SNP [dm3] 2R_10375025_SNP [dm6]	T	G	1.519e^-4	0.74	INTRON CG42732
2R	16716364	2R_16716364_SNP [dm3] 2R_20828859_SNP [dm6]	A	G	1.523e^-4	0.74	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	20233640	2L_20233640_SNP [dm3] 2L_20233640_SNP [dm6]	A	G	1.540e^-4	0.74	INTERGENIC
2R	13857300	2R_13857300_SNP [dm3] 2R_17969795_SNP [dm6]	G	A	1.541e^-4	0.74	INTERGENIC
2L	7495917	2L_7495917_DEL [dm3] 2L_7495917_DEL [dm6]	TGTC	T	1.553e^-4	0.74	UTR_5_PRIME Ziz DOWNSTREAM Obp28a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9128782	3L_9128782_SNP [dm3] 3L_9135682_SNP [dm6]	A	T	1.555e^-4	0.74	UTR_3_PRIME Dhpr DOWNSTREAM Use1	TF binding site BDTNP1_TFBS_dl
2R	8963497	2R_8963497_SNP [dm3] 2R_13075992_SNP [dm6]	G	T	1.556e^-4	0.74	INTRON Drl-2
3R	9388193	3R_9388193_DEL [dm3] 3R_13562471_DEL [dm6]	CGTTAA	C	1.558e^-4	0.74	INTERGENIC
2R	2869408	2R_2869408_SNP [dm3] 2R_6981903_SNP [dm6]	G	A	1.560e^-4	0.74	SYNONYMOUS_CODING CG30156 UPSTREAM CR44171 INTRON vimar	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14221676	X_14221676_SNP [dm3] X_14327643_SNP [dm6]	G	T	1.561e^-4	0.74	INTRON dpr8
3R	14015256	3R_14015256_SNP [dm3] 3R_18189534_SNP [dm6]	T	C	1.566e^-4	0.74	SYNONYMOUS_CODING MED17 UPSTREAM CG12321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19919338	3R_19919338_SNP [dm3] 3R_24093616_SNP [dm6]	A	C	1.567e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9343356	2L_9343356_SNP [dm3] 2L_9343356_SNP [dm6]	C	T	1.575e^-4	0.74	NON_SYNONYMOUS_CODING CG3748
2L	5688239	2L_5688239_SNP [dm3] 2L_5688239_SNP [dm6]	C	T	1.575e^-4	0.74	INTERGENIC
X	12086255	X_12086255_INS [dm3] X_12192222_INS [dm6]	G	GAG	1.578e^-4	0.74	INTRON Ten-a
X	2318786	X_2318786_SNP [dm3] X_2424753_SNP [dm6]	G	A	1.581e^-4	0.74	DOWNSTREAM CG32797 INTERGENIC
3R	17412572	3R_17412572_SNP [dm3] 3R_21586850_SNP [dm6]	T	A	1.584e^-4	0.74	INTRON InR
3R	25093064	3R_25093064_SNP [dm3] 3R_29267342_SNP [dm6]	G	C	1.593e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3439282	3L_3439282_DEL [dm3] 3L_3439282_DEL [dm6]	AAGGTG	A	1.597e^-4	0.74	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3609550	X_3609550_SNP [dm3] X_3715517_SNP [dm6]	G	A	1.598e^-4	0.74	INTRON Rala
X	12184484	X_12184484_SNP [dm3] X_12290451_SNP [dm6]	C	T	1.598e^-4	0.74	INTRON Ten-a
2L	4152794	2L_4152794_DEL [dm3] 2L_4152794_DEL [dm6]	TC	T	1.601e^-4	0.74	INTERGENIC
3L	8938198	3L_8938198_SNP [dm3] 3L_8945098_SNP [dm6]	A	T	1.602e^-4	0.74	UPSTREAM orb2 INTRON CG43783 & 1 other
3R	26539873	3R_26539873_SNP [dm3] 3R_30714151_SNP [dm6]	A	G	1.606e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21456317	3R_21456317_INS [dm3] 3R_25630595_INS [dm6]	C	CC	1.609e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6779592	2L_6779592_SNP [dm3] 2L_6779592_SNP [dm6]	C	T	1.611e^-4	0.74	SYNONYMOUS_CODING nrv1
3R	9197156	3R_9197156_SNP [dm3] 3R_13371434_SNP [dm6]	A	G	1.612e^-4	0.74	SYNONYMOUS_CODING Lip3
2L	7265419	2L_7265419_SNP [dm3] 2L_7265419_SNP [dm6]	C	T	1.613e^-4	0.74	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4620855	X_4620855_SNP [dm3] X_4726822_SNP [dm6]	G	A	1.613e^-4	0.74	INTRON Proc-R	TF binding site mE1_TFBS_chinmo
2R	18264509	2R_18264509_SNP [dm3] 2R_22377004_SNP [dm6]	C	T	1.616e^-4	0.74	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
X	10444486	X_10444486_SNP [dm3] X_10550453_SNP [dm6]	G	T	1.621e^-4	0.74	INTRON spri
2R	14076117	2R_14076117_SNP [dm3] 2R_18188612_SNP [dm6]	A	G	1.632e^-4	0.74	UPSTREAM CG14500 DOWNSTREAM CG14499 INTRON CG33958
3L	5274279	3L_5274279_SNP [dm3] 3L_5281179_SNP [dm6]	G	T	1.636e^-4	0.74	INTERGENIC
3R	13127354	3R_13127354_SNP [dm3] 3R_17301632_SNP [dm6]	T	C	1.638e^-4	0.74	INTERGENIC
2R	18790203	2R_18790203_INS [dm3] 2R_22902680_INS [dm6]	A	TCG	1.639e^-4	0.74	INTRON nahoda
3L	1959311	3L_1959311_SNP [dm3] 3L_1959311_SNP [dm6]	G	T	1.640e^-4	0.74	INTRON mv
3L	17216457	3L_17216457_SNP [dm3] 3L_17223357_SNP [dm6]	T	A	1.647e^-4	0.74	INTRON Rbp6
2L	7263236	2L_7263236_SNP [dm3] 2L_7263236_SNP [dm6]	G	A	1.649e^-4	0.74	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5523203	3L_5523203_SNP [dm3] 3L_5530103_SNP [dm6]	A	T	1.657e^-4	0.74	UPSTREAM Lkr INTERGENIC
3R	20930525	3R_20930525_DEL [dm3] 3R_25104803_DEL [dm6]	ATA	A	1.657e^-4	0.74	INTRON CG34027
3R	9295709	3R_9295709_SNP [dm3] 3R_13469987_SNP [dm6]	A	T	1.658e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4621517	X_4621517_SNP [dm3] X_4727484_SNP [dm6]	C	G	1.659e^-4	0.74	SYNONYMOUS_CODING Proc-R
3R	19919306	3R_19919306_SNP [dm3] 3R_24093584_SNP [dm6]	G	C	1.665e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22291295	3R_22291295_DEL [dm3] 3R_26465573_DEL [dm6]	TT	T	1.666e^-4	0.74	UTR_5_PRIME CG5455 INTRON CG5455
3R	25486780	3R_25486780_SNP [dm3] 3R_29661058_SNP [dm6]	G	C	1.675e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_sbb
X	14216490	X_14216490_SNP [dm3] X_14322457_SNP [dm6]	T	C	1.679e^-4	0.74	UTR_5_PRIME dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7265429	2L_7265429_SNP [dm3] 2L_7265429_SNP [dm6]	T	C	1.682e^-4	0.74	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14221538	X_14221538_SNP [dm3] X_14327505_SNP [dm6]	T	A	1.682e^-4	0.74	INTRON dpr8
X	18065572	X_18065572_SNP [dm3] X_18171539_SNP [dm6]	A	G	1.682e^-4	0.74	UTR_3_PRIME Frq1
3R	18651305	3R_18651305_SNP [dm3] 3R_22825583_SNP [dm6]	C	A	1.684e^-4	0.74	EXON CR44350
X	18063480	X_18063480_SNP [dm3] X_18169447_SNP [dm6]	T	C	1.687e^-4	0.74	INTRON Frq1
3L	10262239	3L_10262239_SNP [dm3] 3L_10269139_SNP [dm6]	C	A	1.688e^-4	0.74	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2R	8494260	2R_8494260_SNP [dm3] 2R_12606755_SNP [dm6]	A	T	1.688e^-4	0.74	INTRON Amph
3R	19919366	3R_19919366_SNP [dm3] 3R_24093644_SNP [dm6]	G	T	1.690e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3R	23271934	3R_23271934_SNP [dm3] 3R_27446212_SNP [dm6]	C	A	1.691e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5530567	3L_5530567_SNP [dm3] 3L_5537467_SNP [dm6]	G	A	1.702e^-4	0.74	DOWNSTREAM CG10625 INTERGENIC
3R	19576606	3R_19576606_SNP [dm3] 3R_23750884_SNP [dm6]	C	G	1.705e^-4	0.74	UTR_3_PRIME Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad
2R	4615386	2R_4615386_SNP [dm3] 2R_8727881_SNP [dm6]	T	G	1.708e^-4	0.74	NON_SYNONYMOUS_CODING gcl
3L	8974252	3L_8974252_SNP [dm3] 3L_8981152_SNP [dm6]	A	G	1.711e^-4	0.74	UPSTREAM CG13314 INTERGENIC
3L	5530563	3L_5530563_SNP [dm3] 3L_5537463_SNP [dm6]	G	A	1.715e^-4	0.74	DOWNSTREAM CG10625 INTERGENIC
X	20507466	X_20507466_SNP [dm3] X_20636439_SNP [dm6]	G	A	1.727e^-4	0.74	INTERGENIC
2L	9897653	2L_9897653_DEL [dm3] 2L_9897653_DEL [dm6]	CAAAA	C	1.730e^-4	0.74	UPSTREAM RpS2 DOWNSTREAM Muc30E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16479790	X_16479790_SNP [dm3] X_16585757_SNP [dm6]	G	A	1.731e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3L	1210299	3L_1210299_SNP [dm3] 3L_1210299_SNP [dm6]	T	C	1.731e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3R	13704843	3R_13704843_DEL [dm3] 3R_17879121_DEL [dm6]	AGAGTTATATGGTCGAAA...	A	1.738e^-4	0.74	INTRON Rim	TF binding site mE1_TFBS_inv
2R	6545473	2R_6545473_SNP [dm3] 2R_10657968_SNP [dm6]	A	G	1.739e^-4	0.74	UPSTREAM CR44452 INTERGENIC
3R	25604777	3R_25604777_SNP [dm3] 3R_29779055_SNP [dm6]	G	T	1.742e^-4	0.74	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	10705646	2L_10705646_SNP [dm3] 2L_10705646_SNP [dm6]	C	A	1.750e^-4	0.74	DOWNSTREAM CG6415 INTRON Lip2
2L	12093596	2L_12093596_SNP [dm3] 2L_12093596_SNP [dm6]	C	G	1.759e^-4	0.74	UPSTREAM Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13441608	3R_13441608_SNP [dm3] 3R_17615886_SNP [dm6]	A	C	1.760e^-4	0.74	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14271129	2R_14271129_SNP [dm3] 2R_18383624_SNP [dm6]	A	G	1.762e^-4	0.74	UPSTREAM IM1 & 2 others INTERGENIC
3R	16763722	3R_16763722_DEL [dm3] 3R_20938000_DEL [dm6]	AACTAACTTTTTATACCCGT...	C	1.770e^-4	0.74	INTRON CG31191
2L	11633463	2L_11633463_SNP [dm3] 2L_11633463_SNP [dm6]	C	A	1.773e^-4	0.74	INTERGENIC
3R	26158494	3R_26158494_SNP [dm3] 3R_30332772_SNP [dm6]	C	T	1.778e^-4	0.74	INTRON hdc
2L	9838913	2L_9838913_INS [dm3] 2L_9838913_INS [dm6]	T	TT	1.782e^-4	0.74	INTRON nAChRalpha6
X	10437204	X_10437204_SNP [dm3] X_10543171_SNP [dm6]	A	T	1.792e^-4	0.74	INTRON spri
3R	19919436	3R_19919436_SNP [dm3] 3R_24093714_SNP [dm6]	C	T	1.800e^-4	0.74	INTRON 4EHP
2L	9803756	2L_9803756_INS [dm3] 2L_9803756_INS [dm6]	C	CTTT	1.800e^-4	0.74	INTRON nAChRalpha6
3R	25814166	3R_25814166_SNP [dm3] 3R_29988444_SNP [dm6]	C	T	1.812e^-4	0.74	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	10503120	3L_10503120_SNP [dm3] 3L_10510020_SNP [dm6]	A	G	1.814e^-4	0.74	INTRON A2bp1
X	1323596	X_1323596_INS [dm3] X_1429563_INS [dm6]	C	CTGGCGATCCTCCCGCTCTT...	1.816e^-4	0.74	INTRON futsch	TF binding site mE1_TFBS_chinmo
X	3386143	X_3386143_SNP [dm3] X_3492110_SNP [dm6]	C	T	1.817e^-4	0.74	SYNONYMOUS_CODING Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9199408	2L_9199408_SNP [dm3] 2L_9199408_SNP [dm6]	C	T	1.819e^-4	0.74	INTRON tai
3L	5523155	3L_5523155_SNP [dm3] 3L_5530055_SNP [dm6]	A	T	1.827e^-4	0.74	UPSTREAM Lkr INTERGENIC
X	2935040	X_2935040_SNP [dm3] X_3041007_SNP [dm6]	A	C	1.829e^-4	0.74	INTRON kirre	TF binding site BDTNP1_TFBS_sna
2R	12874793	2R_12874793_SNP [dm3] 2R_16987288_SNP [dm6]	G	A	1.831e^-4	0.74	INTRON Cbp53E
2L	9342363	2L_9342363_SNP [dm3] 2L_9342363_SNP [dm6]	G	T	1.831e^-4	0.74	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3L	10599934	3L_10599934_SNP [dm3] 3L_10606834_SNP [dm6]	A	G	1.833e^-4	0.74	INTERGENIC
3R	11674396	3R_11674396_SNP [dm3] 3R_15848674_SNP [dm6]	G	T	1.855e^-4	0.74	DOWNSTREAM CG4546 INTRON cv-d
2R	2462385	2R_2462385_SNP [dm3] 2R_6574880_SNP [dm6]	G	C	1.860e^-4	0.74	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6337745	2R_6337745_SNP [dm3] 2R_10450240_SNP [dm6]	T	G	1.867e^-4	0.74	INTRON Galphao & 1 other
2L	16749024	2L_16749024_SNP [dm3] 2L_16749024_SNP [dm6]	C	T	1.869e^-4	0.74	DOWNSTREAM CG17912 INTRON CG17912	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	7073016	3R_7073016_DEL [dm3] 3R_11247294_DEL [dm6]	TATGGTGGTAAATGTATC...	T	1.869e^-4	0.74	DOWNSTREAM CR43283 & 1 other INTERGENIC
3R	17219664	3R_17219664_SNP [dm3] 3R_21393942_SNP [dm6]	A	C	1.872e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9884037	2R_9884037_SNP [dm3] 2R_13996532_SNP [dm6]	A	G	1.882e^-4	0.74	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15663472	3L_15663472_SNP [dm3] 3L_15670372_SNP [dm6]	A	G	1.882e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	18064878	X_18064878_SNP [dm3] X_18170845_SNP [dm6]	A	G	1.882e^-4	0.74	UTR_3_PRIME Frq1
3R	7874708	3R_7874708_SNP [dm3] 3R_12048986_SNP [dm6]	T	C	1.884e^-4	0.74	UTR_5_PRIME CG14739	TF binding site mE1_TFBS_cad
X	14224400	X_14224400_SNP [dm3] X_14330367_SNP [dm6]	T	G	1.884e^-4	0.74	INTRON dpr8
2L	9838814	2L_9838814_MNP [dm3] 2L_9838814_MNP [dm6]	TAA	ATG	1.890e^-4	0.74	INTRON nAChRalpha6
2L	9838817	2L_9838817_DEL [dm3] 2L_9838817_DEL [dm6]	CTTTGAACTATA...	C	1.890e^-4	0.74	INTRON nAChRalpha6
3L	5524258	3L_5524258_SNP [dm3] 3L_5531158_SNP [dm6]	G	A	1.895e^-4	0.74	INTERGENIC
3R	23964216	3R_23964216_SNP [dm3] 3R_28138494_SNP [dm6]	C	A	1.897e^-4	0.74	INTERGENIC
X	14217595	X_14217595_SNP [dm3] X_14323562_SNP [dm6]	G	C	1.898e^-4	0.74	INTRON dpr8
X	5250361	X_5250361_SNP [dm3] X_5356328_SNP [dm6]	T	C	1.905e^-4	0.74	INTRON SK
X	16496469	X_16496469_SNP [dm3] X_16602436_SNP [dm6]	G	T	1.909e^-4	0.74	NON_SYNONYMOUS_CODING Nup153	TF binding site mE1_TFBS_sens
2L	16731129	2L_16731129_SNP [dm3] 2L_16731129_SNP [dm6]	C	T	1.911e^-4	0.74	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl
3L	8928829	3L_8928829_SNP [dm3] 3L_8935729_SNP [dm6]	C	T	1.911e^-4	0.74	SYNONYMOUS_CODING CG43783	TF binding site mE1_TFBS_cad
3L	6777577	3L_6777577_SNP [dm3] 3L_6784477_SNP [dm6]	T	C	1.921e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	6827616	2R_6827616_SNP [dm3] 2R_10940111_SNP [dm6]	T	C	1.923e^-4	0.74	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2L	12093654	2L_12093654_SNP [dm3] 2L_12093654_SNP [dm6]	T	A	1.923e^-4	0.74	UPSTREAM Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15421138	2L_15421138_SNP [dm3] 2L_15421138_SNP [dm6]	T	C	1.924e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10503056	3L_10503056_INS [dm3] 3L_10509956_INS [dm6]	C	CC	1.929e^-4	0.74	INTRON A2bp1
3L	6353950	3L_6353950_SNP [dm3] 3L_6360850_SNP [dm6]	A	G	1.934e^-4	0.74	INTERGENIC
3L	1527907	3L_1527907_SNP [dm3] 3L_1527907_SNP [dm6]	G	C	1.940e^-4	0.74	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25520266	3R_25520266_SNP [dm3] 3R_29694544_SNP [dm6]	G	T	1.942e^-4	0.74	INTRON dmrt99B
2L	12397211	2L_12397211_SNP [dm3] 2L_12397211_SNP [dm6]	C	A	1.950e^-4	0.74	UTR_3_PRIME bru-2
X	10026963	X_10026963_SNP [dm3] X_10132930_SNP [dm6]	T	G	1.951e^-4	0.74	INTRON CR44894 & 1 other
X	12165360	X_12165360_SNP [dm3] X_12271327_SNP [dm6]	C	T	1.951e^-4	0.74	INTRON Ten-a
X	10441578	X_10441578_SNP [dm3] X_10547545_SNP [dm6]	G	A	1.963e^-4	0.74	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12230036	3R_12230036_SNP [dm3] 3R_16404314_SNP [dm6]	G	A	1.964e^-4	0.74	UPSTREAM ss INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	10405676	3L_10405676_SNP [dm3] 3L_10412576_SNP [dm6]	C	A	1.977e^-4	0.74	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	19546808	2R_19546808_SNP [dm3] 2R_23659285_SNP [dm6]	G	C	1.979e^-4	0.74	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1672536	2L_1672536_SNP [dm3] 2L_1672536_SNP [dm6]	C	T	1.981e^-4	0.74	INTRON chinmo
2L	9414774	2L_9414774_SNP [dm3] 2L_9414774_SNP [dm6]	C	T	1.982e^-4	0.74	INTRON Shawl
3L	22761839	3L_22761839_SNP [dm3] 3L_22768739_SNP [dm6]	A	G	1.987e^-4	0.74	INTRON SPoCk
3R	19919321	3R_19919321_SNP [dm3] 3R_24093599_SNP [dm6]	T	G	1.994e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13656734	3R_13656734_INS [dm3] 3R_17831012_INS [dm6]	T	TG	2.004e^-4	0.74	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10504939	3R_10504939_SNP [dm3] 3R_14679217_SNP [dm6]	G	C	2.005e^-4	0.74	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	23271932	3R_23271932_SNP [dm3] 3R_27446210_SNP [dm6]	G	C	2.014e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13353778	3L_13353778_SNP [dm3] 3L_13360678_SNP [dm6]	C	A	2.019e^-4	0.74	INTERGENIC
X	10697833	X_10697833_DEL [dm3] X_10803800_DEL [dm6]	AA	A	2.026e^-4	0.74	INTRON Imp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14192635	2L_14192635_SNP [dm3] 2L_14192635_SNP [dm6]	C	T	2.036e^-4	0.74	INTRON Dyrk2
X	7787359	X_7787359_SNP [dm3] X_7893326_SNP [dm6]	C	T	2.037e^-4	0.74	NON_SYNONYMOUS_CODING CG45089 UTR_5_PRIME CG18624 UPSTREAM p115	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	17070153	2R_17070153_SNP [dm3] 2R_21182648_SNP [dm6]	T	C	2.043e^-4	0.74	UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14215601	X_14215601_SNP [dm3] X_14321568_SNP [dm6]	A	G	2.056e^-4	0.74	UPSTREAM dpr8 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8312191	2L_8312191_SNP [dm3] 2L_8312191_SNP [dm6]	G	A	2.057e^-4	0.74	UPSTREAM CG7810 INTRON CG7806
2R	4591950	2R_4591950_SNP [dm3] 2R_8704445_SNP [dm6]	C	A	2.059e^-4	0.74	UTR_3_PRIME CG12376
2L	11892141	2L_11892141_SNP [dm3] 2L_11892141_SNP [dm6]	C	T	2.064e^-4	0.74	INTRON Pde1c
2R	20505727	2R_20505727_SNP [dm3] 2R_24618204_SNP [dm6]	C	A	2.066e^-4	0.74	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3L	16954178	3L_16954178_SNP [dm3] 3L_16961078_SNP [dm6]	C	T	2.070e^-4	0.74	INTRON Nc73EF
3R	9335546	3R_9335546_DEL [dm3] 3R_13509824_DEL [dm6]	AT	C	2.073e^-4	0.74	INTERGENIC
3L	5252865	3L_5252865_SNP [dm3] 3L_5259765_SNP [dm6]	T	C	2.074e^-4	0.74	INTRON shep
2L	9322946	2L_9322946_SNP [dm3] 2L_9322946_SNP [dm6]	T	A	2.081e^-4	0.74	INTERGENIC
2L	10098762	2L_10098762_SNP [dm3] 2L_10098762_SNP [dm6]	A	T	2.084e^-4	0.74	INTRON CG34109 & 1 other
2R	3812652	2R_3812652_SNP [dm3] 2R_7925147_SNP [dm6]	A	C	2.085e^-4	0.74	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6554177	3R_6554177_SNP [dm3] 3R_10728455_SNP [dm6]	T	C	2.089e^-4	0.74	INTERGENIC
3R	10189834	3R_10189834_DEL [dm3] 3R_14364112_DEL [dm6]	ACAGCCACGGCTACTGGCTA...	A	2.089e^-4	0.74	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16799334	2L_16799334_SNP [dm3] 2L_16799334_SNP [dm6]	C	T	2.090e^-4	0.74	UPSTREAM Ugt36Bc INTRON Ugt36Bc
2R	14076109	2R_14076109_SNP [dm3] 2R_18188604_SNP [dm6]	A	G	2.095e^-4	0.74	UPSTREAM CG14500 DOWNSTREAM CG14499 INTRON CG33958
2R	15503869	2R_15503869_SNP [dm3] 2R_19616364_SNP [dm6]	T	G	2.104e^-4	0.74	INTRON sm
2R	7277048	2R_7277048_SNP [dm3] 2R_11389543_SNP [dm6]	C	T	2.108e^-4	0.74	UPSTREAM CG30022 INTRON sprt
2R	8966981	2R_8966981_SNP [dm3] 2R_13079476_SNP [dm6]	T	C	2.112e^-4	0.74	UTR_5_PRIME Drl-2
3L	2309444	3L_2309444_SNP [dm3] 3L_2309444_SNP [dm6]	T	G	2.114e^-4	0.74	INTERGENIC
3R	7867311	3R_7867311_SNP [dm3] 3R_12041589_SNP [dm6]	G	T	2.118e^-4	0.74	SYNONYMOUS_CODING CG14736
2L	10720773	2L_10720773_SNP [dm3] 2L_10720773_SNP [dm6]	C	A	2.121e^-4	0.74	INTERGENIC
2L	12296926	2L_12296926_SNP [dm3] 2L_12296926_SNP [dm6]	C	T	2.132e^-4	0.74	INTRON aret
3L	5523161	3L_5523161_SNP [dm3] 3L_5530061_SNP [dm6]	G	A	2.134e^-4	0.74	UPSTREAM Lkr INTERGENIC
X	20507508	X_20507508_MNP [dm3] X_20636481_MNP [dm6]	GAT	ATA	2.138e^-4	0.74	INTERGENIC
3R	13392509	3R_13392509_SNP [dm3] 3R_17566787_SNP [dm6]	G	A	2.140e^-4	0.74	INTRON Hmx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15473588	2L_15473588_SNP [dm3] 2L_15473588_SNP [dm6]	T	A	2.154e^-4	0.74	INTERGENIC
2L	14107953	2L_14107953_SNP [dm3] 2L_14107953_SNP [dm6]	A	G	2.156e^-4	0.74	DOWNSTREAM CG15293 & 1 other INTERGENIC
X	10437605	X_10437605_SNP [dm3] X_10543572_SNP [dm6]	T	A	2.159e^-4	0.74	INTRON spri
3R	18651638	3R_18651638_SNP [dm3] 3R_22825916_SNP [dm6]	A	T	2.160e^-4	0.74	EXON CR44350
X	16479776	X_16479776_SNP [dm3] X_16585743_SNP [dm6]	A	C	2.166e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
2L	10721923	2L_10721923_SNP [dm3] 2L_10721923_SNP [dm6]	G	T	2.170e^-4	0.74	INTERGENIC
2R	18061884	2R_18061884_SNP [dm3] 2R_22174379_SNP [dm6]	T	C	2.175e^-4	0.74	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	25519588	3R_25519588_SNP [dm3] 3R_29693866_SNP [dm6]	G	C	2.176e^-4	0.74	INTRON dmrt99B
3R	4970428	3R_4970428_DEL [dm3] 3R_9144706_DEL [dm6]	AA	A	2.177e^-4	0.74	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7958909	3L_7958909_SNP [dm3] 3L_7965809_SNP [dm6]	C	T	2.182e^-4	0.74	INTERGENIC
3R	7311710	3R_7311710_SNP [dm3] 3R_11485988_SNP [dm6]	C	T	2.182e^-4	0.74	UPSTREAM CR45581 INTERGENIC
3L	5525552	3L_5525552_SNP [dm3] 3L_5532452_SNP [dm6]	G	A	2.183e^-4	0.74	INTERGENIC
2L	9414762	2L_9414762_SNP [dm3] 2L_9414762_SNP [dm6]	A	T	2.183e^-4	0.74	INTRON Shawl
2R	7276983	2R_7276983_SNP [dm3] 2R_11389478_SNP [dm6]	T	C	2.187e^-4	0.74	UPSTREAM CG30022 INTRON sprt
2L	8348373	2L_8348373_SNP [dm3] 2L_8348373_SNP [dm6]	T	G	2.189e^-4	0.74	INTRON CG7778
2R	18790236	2R_18790236_SNP [dm3] 2R_22902713_SNP [dm6]	A	T	2.192e^-4	0.74	INTRON nahoda
2R	6844425	2R_6844425_DEL [dm3] 2R_10956920_DEL [dm6]	TTTCGTTTTTTCGAAA...	T	2.195e^-4	0.74	INTERGENIC
X	3658310	X_3658310_SNP [dm3] X_3764277_SNP [dm6]	C	G	2.198e^-4	0.74	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8667569	3R_8667569_DEL [dm3] 3R_12841847_DEL [dm6]	CC	C	2.232e^-4	0.74	UTR_3_PRIME beat-Va
X	4560071	X_4560071_SNP [dm3] X_4666038_SNP [dm6]	A	C	2.233e^-4	0.74	INTRON CG3009
3R	13654763	3R_13654763_SNP [dm3] 3R_17829041_SNP [dm6]	T	A	2.237e^-4	0.74	INTRON tinc	TF binding site mE1_TFBS_HSA
2L	16571455	2L_16571455_SNP [dm3] 2L_16571455_SNP [dm6]	G	A	2.237e^-4	0.74	INTRON CG42389
X	20453699	X_20453699_INS [dm3] X_20582672_INS [dm6]	A	ATGTA	2.243e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9897658	2L_9897658_INS [dm3] 2L_9897658_INS [dm6]	T	TTACTTTT	2.244e^-4	0.74	UPSTREAM RpS2 DOWNSTREAM Muc30E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3770323	X_3770323_SNP [dm3] X_3876290_SNP [dm6]	C	T	2.249e^-4	0.74	INTRON CG2930
X	3384061	X_3384061_DEL [dm3] X_3490028_DEL [dm6]	TCT	C	2.252e^-4	0.74	UTR_3_PRIME CG10803 DOWNSTREAM Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24993219	3R_24993219_SNP [dm3] 3R_29167497_SNP [dm6]	T	A	2.253e^-4	0.74	NON_SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
X	2944587	X_2944587_SNP [dm3] X_3050554_SNP [dm6]	G	A	2.270e^-4	0.74	INTRON kirre
3R	12554539	3R_12554539_DEL [dm3] 3R_16728817_DEL [dm6]	AAC	T	2.276e^-4	0.74	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	17916436	2R_17916436_DEL [dm3] 2R_22028931_DEL [dm6]	CAC	C	2.281e^-4	0.74	INTRON CG34370
2L	17718870	2L_17718870_SNP [dm3] 2L_17718870_SNP [dm6]	A	T	2.281e^-4	0.74	INTRON CadN
2R	6561892	2R_6561892_SNP [dm3] 2R_10674387_SNP [dm6]	C	T	2.288e^-4	0.74	INTRON stan	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10177873	3L_10177873_SNP [dm3] 3L_10184773_SNP [dm6]	C	A	2.289e^-4	0.74	INTRON dpr10
3R	9015116	3R_9015116_SNP [dm3] 3R_13189394_SNP [dm6]	T	C	2.299e^-4	0.74	UTR_3_PRIME CG14380
2L	10721463	2L_10721463_SNP [dm3] 2L_10721463_SNP [dm6]	C	A	2.300e^-4	0.74	INTERGENIC
3R	17710322	3R_17710322_SNP [dm3] 3R_21884600_SNP [dm6]	T	C	2.301e^-4	0.74	UPSTREAM CR45046 & 1 other DOWNSTREAM CG17819 & 1 other INTERGENIC
X	17383517	X_17383517_SNP [dm3] X_17489484_SNP [dm6]	A	G	2.302e^-4	0.74	UPSTREAM CG43658 INTRON CG43658
3L	10405679	3L_10405679_SNP [dm3] 3L_10412579_SNP [dm6]	G	T	2.306e^-4	0.74	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	16084771	3L_16084771_SNP [dm3] 3L_16091671_SNP [dm6]	A	G	2.309e^-4	0.74	SYNONYMOUS_CODING ClC-c
3R	9425309	3R_9425309_SNP [dm3] 3R_13599587_SNP [dm6]	T	A	2.310e^-4	0.74	INTERGENIC
X	1808307	X_1808307_SNP [dm3] X_1914274_SNP [dm6]	A	T	2.320e^-4	0.74	NON_SYNONYMOUS_CODING Rbcn-3B INTRON mip130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26074082	3R_26074082_SNP [dm3] 3R_30248360_SNP [dm6]	C	T	2.324e^-4	0.74	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5688230	2L_5688230_SNP [dm3] 2L_5688230_SNP [dm6]	G	T	2.328e^-4	0.74	INTERGENIC
2L	18314806	2L_18314806_SNP [dm3] 2L_18314806_SNP [dm6]	G	T	2.331e^-4	0.74	UPSTREAM CR44489 INTERGENIC
X	14224474	X_14224474_SNP [dm3] X_14330441_SNP [dm6]	A	T	2.331e^-4	0.74	INTRON dpr8
3R	10420226	3R_10420226_SNP [dm3] 3R_14594504_SNP [dm6]	T	C	2.334e^-4	0.74	INTRON stumps	regulatory region REDfly_CRMs
2R	12315977	2R_12315977_SNP [dm3] 2R_16428472_SNP [dm6]	T	C	2.335e^-4	0.74	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_twi
X	18065569	X_18065569_SNP [dm3] X_18171536_SNP [dm6]	T	C	2.336e^-4	0.74	UTR_3_PRIME Frq1
2L	11238007	2L_11238007_SNP [dm3] 2L_11238007_SNP [dm6]	A	T	2.337e^-4	0.74	INTRON ab
2R	18227882	2R_18227882_SNP [dm3] 2R_22340377_SNP [dm6]	T	C	2.339e^-4	0.74	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
2L	3179244	2L_3179244_SNP [dm3] 2L_3179244_SNP [dm6]	T	C	2.339e^-4	0.74	INTRON CG34393
3R	9179522	3R_9179522_SNP [dm3] 3R_13353800_SNP [dm6]	A	G	2.342e^-4	0.74	NON_SYNONYMOUS_CODING mthl12
3R	12554517	3R_12554517_SNP [dm3] 3R_16728795_SNP [dm6]	C	T	2.348e^-4	0.74	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2R	7277297	2R_7277297_DEL [dm3] 2R_11389792_DEL [dm6]	TTACCATTGAT...	T	2.355e^-4	0.74	INTRON sprt
X	2088775	X_2088775_DEL [dm3] X_2194742_DEL [dm6]	TGT	T	2.357e^-4	0.74	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14223975	X_14223975_SNP [dm3] X_14329942_SNP [dm6]	A	T	2.373e^-4	0.74	INTRON dpr8
3R	25363797	3R_25363797_SNP [dm3] 3R_29538075_SNP [dm6]	C	G	2.377e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9226284	3R_9226284_SNP [dm3] 3R_13400562_SNP [dm6]	G	C	2.378e^-4	0.74	INTRON CG9796
2L	16731056	2L_16731056_SNP [dm3] 2L_16731056_SNP [dm6]	T	G	2.381e^-4	0.74	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	1664247	2L_1664247_SNP [dm3] 2L_1664247_SNP [dm6]	T	C	2.384e^-4	0.74	INTRON chinmo
3L	13134063	3L_13134063_SNP [dm3] 3L_13140963_SNP [dm6]	A	T	2.385e^-4	0.74	INTERGENIC
3L	7607969	3L_7607969_SNP [dm3] 3L_7614869_SNP [dm6]	C	T	2.388e^-4	0.74	INTRON CG33275
X	901394	X_901394_SNP [dm3] X_1007361_SNP [dm6]	A	T	2.390e^-4	0.74	INTERGENIC
3R	11176768	3R_11176768_SNP [dm3] 3R_15351046_SNP [dm6]	G	T	2.398e^-4	0.74	UPSTREAM CG5038 & 1 other DOWNSTREAM CG42726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14992271	2L_14992271_SNP [dm3] 2L_14992271_SNP [dm6]	T	A	2.405e^-4	0.74	INTRON mol
X	16479741	X_16479741_SNP [dm3] X_16585708_SNP [dm6]	C	A	2.410e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3R	13422372	3R_13422372_SNP [dm3] 3R_17596650_SNP [dm6]	T	C	2.424e^-4	0.74	NON_SYNONYMOUS_CODING CG7606 DOWNSTREAM Sgs5
3R	20608114	3R_20608114_SNP [dm3] 3R_24782392_SNP [dm6]	G	A	2.434e^-4	0.74	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	16731140	2L_16731140_SNP [dm3] 2L_16731140_SNP [dm6]	T	C	2.434e^-4	0.74	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14992274	2L_14992274_SNP [dm3] 2L_14992274_SNP [dm6]	T	A	2.439e^-4	0.74	INTRON mol
X	3540972	X_3540972_INS [dm3] X_3646939_INS [dm6]	T	TT	2.442e^-4	0.74	INTRON AstA-R1
2L	11624083	2L_11624083_SNP [dm3] 2L_11624083_SNP [dm6]	A	G	2.451e^-4	0.74	SYNONYMOUS_CODING kek2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	8004637	3L_8004637_SNP [dm3] 3L_8011537_SNP [dm6]	G	A	2.456e^-4	0.74	INTRON nmo
3L	9035096	3L_9035096_SNP [dm3] 3L_9041996_SNP [dm6]	A	G	2.464e^-4	0.74	INTRON Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19918410	3R_19918410_SNP [dm3] 3R_24092688_SNP [dm6]	A	G	2.464e^-4	0.74	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5428170	2L_5428170_SNP [dm3] 2L_5428170_SNP [dm6]	G	T	2.465e^-4	0.74	INTERGENIC
2L	13264333	2L_13264333_SNP [dm3] 2L_13264333_SNP [dm6]	A	G	2.469e^-4	0.74	DOWNSTREAM CG31848 INTRON CG44085
3R	12076920	3R_12076920_SNP [dm3] 3R_16251198_SNP [dm6]	C	G	2.483e^-4	0.74	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10722252	2L_10722252_SNP [dm3] 2L_10722252_SNP [dm6]	G	A	2.483e^-4	0.74	INTERGENIC
2L	15473725	2L_15473725_SNP [dm3] 2L_15473725_SNP [dm6]	T	C	2.489e^-4	0.74	INTERGENIC
X	4046559	X_4046559_SNP [dm3] X_4152526_SNP [dm6]	A	G	2.489e^-4	0.74	INTRON Fas2
2L	1671606	2L_1671606_SNP [dm3] 2L_1671606_SNP [dm6]	G	A	2.491e^-4	0.74	INTRON chinmo
3L	20605126	3L_20605126_SNP [dm3] 3L_20612026_SNP [dm6]	T	C	2.495e^-4	0.74	INTRON knrl	regulatory region REDfly_CRMs
X	10437518	X_10437518_SNP [dm3] X_10543485_SNP [dm6]	C	T	2.495e^-4	0.74	INTRON spri
2L	1672951	2L_1672951_SNP [dm3] 2L_1672951_SNP [dm6]	T	C	2.498e^-4	0.74	INTRON chinmo
2L	9342222	2L_9342222_DEL [dm3] 2L_9342222_DEL [dm6]	TA	C	2.505e^-4	0.74	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
3L	10503194	3L_10503194_SNP [dm3] 3L_10510094_SNP [dm6]	G	A	2.510e^-4	0.74	INTRON A2bp1
3L	1210422	3L_1210422_INS [dm3] 3L_1210422_INS [dm6]	A	AAAGTAAACT	2.520e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3R	10420221	3R_10420221_SNP [dm3] 3R_14594499_SNP [dm6]	A	G	2.520e^-4	0.74	INTRON stumps	regulatory region REDfly_CRMs
X	10183008	X_10183008_SNP [dm3] X_10288975_SNP [dm6]	T	C	2.527e^-4	0.74	INTRON alpha-Man-I
2R	19244749	2R_19244749_SNP [dm3] 2R_23357226_SNP [dm6]	C	T	2.528e^-4	0.74	SYNONYMOUS_CODING CG3500 UPSTREAM CG9875 DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5476266	3L_5476266_SNP [dm3] 3L_5483166_SNP [dm6]	A	T	2.528e^-4	0.74	NON_SYNONYMOUS_CODING CG4835
X	2089885	X_2089885_SNP [dm3] X_2195852_SNP [dm6]	C	A	2.531e^-4	0.74	INTRON Mct1
2L	16641226	2L_16641226_DEL [dm3] 2L_16641226_DEL [dm6]	AA	A	2.534e^-4	0.74	INTRON CG42389
2L	14298010	2L_14298010_SNP [dm3] 2L_14298010_SNP [dm6]	C	T	2.535e^-4	0.74	INTRON wb
X	5845877	X_5845877_SNP [dm3] X_5951844_SNP [dm6]	T	C	2.535e^-4	0.74	UPSTREAM CG6048 DOWNSTREAM CG32755 INTERGENIC
3L	10262262	3L_10262262_SNP [dm3] 3L_10269162_SNP [dm6]	A	C	2.537e^-4	0.74	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
X	16479782	X_16479782_MNP [dm3] X_16585749_MNP [dm6]	TTA	GAT	2.542e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
2L	10400811	2L_10400811_SNP [dm3] 2L_10400811_SNP [dm6]	A	T	2.555e^-4	0.74	SYNONYMOUS_CODING Cnot4
2R	14047967	2R_14047967_SNP [dm3] 2R_18160462_SNP [dm6]	T	A	2.556e^-4	0.74	UPSTREAM CG10915 DOWNSTREAM CG10914 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	26158515	3R_26158515_SNP [dm3] 3R_30332793_SNP [dm6]	T	C	2.558e^-4	0.74	INTRON hdc
2L	9588166	2L_9588166_SNP [dm3] 2L_9588166_SNP [dm6]	A	G	2.561e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16335374	2L_16335374_SNP [dm3] 2L_16335374_SNP [dm6]	C	T	2.564e^-4	0.74	NON_SYNONYMOUS_CODING CG31817
3L	2598061	3L_2598061_SNP [dm3] 3L_2598061_SNP [dm6]	G	A	2.573e^-4	0.74	SYNONYMOUS_CODING CG12182	TF binding site mE1_TFBS_sens
2R	2877700	2R_2877700_SNP [dm3] 2R_6990195_SNP [dm6]	T	A	2.574e^-4	0.74	INTERGENIC	transposable element FlyBase
3R	9621269	3R_9621269_SNP [dm3] 3R_13795547_SNP [dm6]	T	A	2.587e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6556675	X_6556675_SNP [dm3] X_6662642_SNP [dm6]	T	A	2.593e^-4	0.74	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1620263	2L_1620263_SNP [dm3] 2L_1620263_SNP [dm6]	G	A	2.611e^-4	0.74	EXON CR44603
2L	10722606	2L_10722606_SNP [dm3] 2L_10722606_SNP [dm6]	T	A	2.613e^-4	0.74	INTERGENIC
2L	5277867	2L_5277867_SNP [dm3] 2L_5277867_SNP [dm6]	T	A	2.622e^-4	0.74	UPSTREAM Bsg25D & 1 other INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13460171	2L_13460171_SNP [dm3] 2L_13460171_SNP [dm6]	G	A	2.626e^-4	0.74	UTR_3_PRIME CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
2L	21806580	2L_21806580_SNP [dm3] 2L_21806580_SNP [dm6]	T	C	2.637e^-4	0.74	INTERGENIC
2R	20509938	2R_20509938_SNP [dm3] 2R_24622415_SNP [dm6]	G	T	2.645e^-4	0.74	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5205456	3L_5205456_SNP [dm3] 3L_5212356_SNP [dm6]	T	C	2.648e^-4	0.74	INTRON shep
2L	10721490	2L_10721490_SNP [dm3] 2L_10721490_SNP [dm6]	T	A	2.653e^-4	0.74	INTERGENIC
2R	2876729	2R_2876729_SNP [dm3] 2R_6989224_SNP [dm6]	A	T	2.657e^-4	0.74	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
X	16613565	X_16613565_SNP [dm3] X_16719532_SNP [dm6]	G	A	2.660e^-4	0.74	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	14992273	2L_14992273_SNP [dm3] 2L_14992273_SNP [dm6]	A	G	2.663e^-4	0.74	INTRON mol
X	5925768	X_5925768_SNP [dm3] X_6031735_SNP [dm6]	A	T	2.664e^-4	0.74	INTERGENIC	silencer mE1_HDAC_PRE
3R	24803549	3R_24803549_SNP [dm3] 3R_28977827_SNP [dm6]	G	T	2.670e^-4	0.74	INTERGENIC
3L	9522523	3L_9522523_SNP [dm3] 3L_9529423_SNP [dm6]	A	G	2.672e^-4	0.74	INTRON Or67a
2R	18748722	2R_18748722_SNP [dm3] 2R_22861199_SNP [dm6]	A	G	2.677e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3265407	2L_3265407_SNP [dm3] 2L_3265407_SNP [dm6]	A	G	2.682e^-4	0.74	EXON CR45706
2L	6356712	2L_6356712_SNP [dm3] 2L_6356712_SNP [dm6]	C	A	2.688e^-4	0.74	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	15352006	2L_15352006_DEL [dm3] 2L_15352006_DEL [dm6]	GAAGAATTTTGATTTAAGAG...	G	2.690e^-4	0.74	INTERGENIC
X	4572712	X_4572712_SNP [dm3] X_4678679_SNP [dm6]	C	G	2.690e^-4	0.74	INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9562033	3R_9562033_SNP [dm3] 3R_13736311_SNP [dm6]	T	G	2.695e^-4	0.74	INTRON CG34383
2L	21840208	2L_21840208_SNP [dm3] 2L_21840208_SNP [dm6]	T	C	2.698e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18651474	3R_18651474_SNP [dm3] 3R_22825752_SNP [dm6]	A	T	2.704e^-4	0.74	EXON CR44350
2R	6561854	2R_6561854_SNP [dm3] 2R_10674349_SNP [dm6]	A	C	2.706e^-4	0.74	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18326553	2R_18326553_SNP [dm3] 2R_22439048_SNP [dm6]	G	A	2.726e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26987188	3R_26987188_SNP [dm3] 3R_31161466_SNP [dm6]	C	G	2.729e^-4	0.74	INTRON Gycbeta100B & 1 other
3R	7376169	3R_7376169_SNP [dm3] 3R_11550447_SNP [dm6]	G	A	2.732e^-4	0.74	INTERGENIC
2L	12093583	2L_12093583_SNP [dm3] 2L_12093583_SNP [dm6]	G	T	2.738e^-4	0.74	UPSTREAM Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	935319	3L_935319_SNP [dm3] 3L_935319_SNP [dm6]	A	G	2.739e^-4	0.74	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20509937	2R_20509937_SNP [dm3] 2R_24622414_SNP [dm6]	T	C	2.741e^-4	0.74	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2936368	2L_2936368_SNP [dm3] 2L_2936368_SNP [dm6]	A	G	2.747e^-4	0.74	INTRON lilli
3L	5274548	3L_5274548_SNP [dm3] 3L_5281448_SNP [dm6]	G	A	2.747e^-4	0.74	INTERGENIC
2L	21838963	2L_21838963_SNP [dm3] 2L_21838963_SNP [dm6]	A	C	2.753e^-4	0.74	INTERGENIC
3R	14093094	3R_14093094_DEL [dm3] 3R_18267372_DEL [dm6]	AC	A	2.753e^-4	0.74	UPSTREAM CG18599 INTERGENIC
3L	5523216	3L_5523216_SNP [dm3] 3L_5530116_SNP [dm6]	C	G	2.753e^-4	0.74	UPSTREAM Lkr INTERGENIC
3L	8008947	3L_8008947_SNP [dm3] 3L_8015847_SNP [dm6]	T	C	2.755e^-4	0.74	INTRON nmo
3L	2650104	3L_2650104_SNP [dm3] 3L_2650104_SNP [dm6]	C	A	2.758e^-4	0.74	UTR_3_PRIME CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
2R	19179273	2R_19179273_SNP [dm3] 2R_23291750_SNP [dm6]	T	A	2.761e^-4	0.74	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10721783	2L_10721783_SNP [dm3] 2L_10721783_SNP [dm6]	T	G	2.767e^-4	0.74	INTERGENIC
3L	16500964	3L_16500964_DEL [dm3] 3L_16507864_DEL [dm6]	ATGTTGGA	A	2.767e^-4	0.74	INTRON CG43373
2L	16731083	2L_16731083_SNP [dm3] 2L_16731083_SNP [dm6]	A	T	2.767e^-4	0.74	UTR_3_PRIME CG31812 UPSTREAM CG17996 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	21747859	2L_21747859_SNP [dm3] 2L_21747859_SNP [dm6]	C	G	2.779e^-4	0.74	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13412748	3R_13412748_SNP [dm3] 3R_17587026_SNP [dm6]	A	C	2.784e^-4	0.74	INTERGENIC
3L	16791547	3L_16791547_SNP [dm3] 3L_16798447_SNP [dm6]	C	T	2.785e^-4	0.74	INTRON CG9674
2L	10721448	2L_10721448_SNP [dm3] 2L_10721448_SNP [dm6]	C	T	2.789e^-4	0.74	INTERGENIC
2R	7457994	2R_7457994_SNP [dm3] 2R_11570489_SNP [dm6]	C	T	2.789e^-4	0.74	INTERGENIC
X	20507615	X_20507615_SNP [dm3] X_20636588_SNP [dm6]	T	A	2.793e^-4	0.74	INTERGENIC
2L	10816293	2L_10816293_INS [dm3] 2L_10816293_INS [dm6]	G	GA	2.798e^-4	0.74	INTRON Nos
3R	18595575	3R_18595575_SNP [dm3] 3R_22769853_SNP [dm6]	A	C	2.799e^-4	0.74	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
2L	9752335	2L_9752335_SNP [dm3] 2L_9752335_SNP [dm6]	C	T	2.806e^-4	0.74	INTERGENIC
2L	10721897	2L_10721897_SNP [dm3] 2L_10721897_SNP [dm6]	T	A	2.809e^-4	0.74	INTERGENIC
3L	4717974	3L_4717974_SNP [dm3] 3L_4717974_SNP [dm6]	T	G	2.825e^-4	0.74	INTRON RhoGEF64C
2R	6827617	2R_6827617_DEL [dm3] 2R_10940112_DEL [dm6]	TCA	T	2.826e^-4	0.74	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	13185394	2R_13185394_SNP [dm3] 2R_17297889_SNP [dm6]	A	T	2.852e^-4	0.74	INTRON mbl
2L	18219689	2L_18219689_SNP [dm3] 2L_18219689_SNP [dm6]	A	G	2.852e^-4	0.74	INTRON CG42750
3R	8788448	3R_8788448_SNP [dm3] 3R_12962726_SNP [dm6]	G	A	2.857e^-4	0.74	SYNONYMOUS_CODING Spc25 INTRON grsm
3L	10880539	3L_10880539_SNP [dm3] 3L_10887439_SNP [dm6]	T	A	2.863e^-4	0.74	UPSTREAM CG6404 INTERGENIC
3L	10131608	3L_10131608_SNP [dm3] 3L_10138508_SNP [dm6]	C	T	2.868e^-4	0.74	INTRON dpr6
X	14219637	X_14219637_SNP [dm3] X_14325604_SNP [dm6]	A	T	2.878e^-4	0.74	INTRON dpr8
2R	6264204	2R_6264204_SNP [dm3] 2R_10376699_SNP [dm6]	C	G	2.884e^-4	0.74	DOWNSTREAM Ir47a INTRON CG42732 EXON Ir47b
3L	8651520	3L_8651520_SNP [dm3] 3L_8658420_SNP [dm6]	G	A	2.899e^-4	0.74	INTERGENIC
X	16613414	X_16613414_SNP [dm3] X_16719381_SNP [dm6]	T	G	2.908e^-4	0.74	INTRON CG34325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	17710220	3R_17710220_SNP [dm3] 3R_21884498_SNP [dm6]	A	G	2.915e^-4	0.74	UPSTREAM CR45046 & 1 other DOWNSTREAM CG17819 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	9588278	2L_9588278_SNP [dm3] 2L_9588278_SNP [dm6]	C	A	2.916e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9588155	2L_9588155_SNP [dm3] 2L_9588155_SNP [dm6]	A	G	2.921e^-4	0.74	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7960000	2R_7960000_SNP [dm3] 2R_12072495_SNP [dm6]	T	A	2.929e^-4	0.74	INTRON CG8888
3R	12076939	3R_12076939_SNP [dm3] 3R_16251217_SNP [dm6]	A	C	2.931e^-4	0.74	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10136988	3R_10136988_SNP [dm3] 3R_14311266_SNP [dm6]	T	A	2.933e^-4	0.74	INTRON CG31321
2L	1669689	2L_1669689_SNP [dm3] 2L_1669689_SNP [dm6]	A	T	2.933e^-4	0.74	INTRON chinmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	19193875	2R_19193875_SNP [dm3] 2R_23306352_SNP [dm6]	C	T	2.934e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5691399	3L_5691399_SNP [dm3] 3L_5698299_SNP [dm6]	T	G	2.936e^-4	0.74	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5704793	2R_5704793_SNP [dm3] 2R_9817288_SNP [dm6]	A	G	2.936e^-4	0.74	UPSTREAM lectin-46Ca DOWNSTREAM lectin-46Cb INTRON CG1648
X	2549518	X_2549518_INS [dm3] X_2655485_INS [dm6]	T	TTT	2.937e^-4	0.74	INTRON sgg
X	19610758	X_19610758_SNP [dm3] X_19716725_SNP [dm6]	T	A	2.939e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12641995	3L_12641995_SNP [dm3] 3L_12648895_SNP [dm6]	C	G	2.939e^-4	0.74	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25590885	3R_25590885_SNP [dm3] 3R_29765163_SNP [dm6]	T	A	2.944e^-4	0.74	UPSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3001508	2L_3001508_SNP [dm3] 2L_3001508_SNP [dm6]	G	T	2.945e^-4	0.74	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10722605	2L_10722605_SNP [dm3] 2L_10722605_SNP [dm6]	A	T	2.945e^-4	0.74	INTERGENIC
X	18069942	X_18069942_INS [dm3] X_18175909_INS [dm6]	G	GTATCCG	2.948e^-4	0.74	INTERGENIC
2L	21759091	2L_21759091_SNP [dm3] 2L_21759091_SNP [dm6]	C	A	2.953e^-4	0.74	INTRON CG1416
2L	6720414	2L_6720414_SNP [dm3] 2L_6720414_SNP [dm6]	A	T	2.956e^-4	0.74	UTR_3_PRIME homer
3R	9225930	3R_9225930_SNP [dm3] 3R_13400208_SNP [dm6]	T	C	2.968e^-4	0.74	INTRON CG9796
3L	18543702	3L_18543702_SNP [dm3] 3L_18550602_SNP [dm6]	C	T	2.969e^-4	0.74	INTERGENIC
3R	17841821	3R_17841821_SNP [dm3] 3R_22016099_SNP [dm6]	A	G	2.971e^-4	0.74	UTR_3_PRIME CG6332 DOWNSTREAM CG6439	TF binding site mE1_TFBS_cad
2R	4115289	2R_4115289_SNP [dm3] 2R_8227784_SNP [dm6]	C	T	2.972e^-4	0.74	DOWNSTREAM CG34217 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8478454	X_8478454_SNP [dm3] X_8584421_SNP [dm6]	G	A	2.974e^-4	0.74	INTRON CG12065
2L	9396708	2L_9396708_SNP [dm3] 2L_9396708_SNP [dm6]	C	T	2.974e^-4	0.74	DOWNSTREAM CG4438 INTRON Shawl
X	3030064	X_3030064_SNP [dm3] X_3136031_SNP [dm6]	C	T	2.974e^-4	0.74	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	12635175	X_12635175_SNP [dm3] X_12741142_SNP [dm6]	A	T	2.995e^-4	0.74	INTRON Smr
3R	14647754	3R_14647754_SNP [dm3] 3R_18822032_SNP [dm6]	G	C	2.995e^-4	0.74	INTRON CG18208
3R	20534506	3R_20534506_DEL [dm3] 3R_24708784_DEL [dm6]	CAC	C	2.996e^-4	0.74	UTR_3_PRIME slo DOWNSTREAM slo
2L	8008153	2L_8008153_SNP [dm3] 2L_8008153_SNP [dm6]	C	T	2.998e^-4	0.74	UPSTREAM Spn28Dc DOWNSTREAM CG12560 INTERGENIC
X	888990	X_888990_SNP [dm3] X_994957_SNP [dm6]	T	A	3.008e^-4	0.74	INTERGENIC
X	13621451	X_13621451_SNP [dm3] X_13727418_SNP [dm6]	T	C	3.011e^-4	0.74	UTR_3_PRIME g DOWNSTREAM g & 1 other
3R	9621258	3R_9621258_SNP [dm3] 3R_13795536_SNP [dm6]	G	C	3.013e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	7944626	3R_7944626_SNP [dm3] 3R_12118904_SNP [dm6]	C	T	3.013e^-4	0.74	INTERGENIC
3L	10604695	3L_10604695_SNP [dm3] 3L_10611595_SNP [dm6]	G	T	3.031e^-4	0.74	INTERGENIC
3R	23916491	3R_23916491_SNP [dm3] 3R_28090769_SNP [dm6]	G	C	3.032e^-4	0.74	DOWNSTREAM CG34362 INTERGENIC
2R	15249600	2R_15249600_SNP [dm3] 2R_19362095_SNP [dm6]	T	C	3.033e^-4	0.74	INTRON CG11961
3R	25520057	3R_25520057_SNP [dm3] 3R_29694335_SNP [dm6]	C	T	3.036e^-4	0.74	INTRON dmrt99B
X	6823746	X_6823746_SNP [dm3] X_6929713_SNP [dm6]	C	A	3.045e^-4	0.74	INTRON CG14431
3L	13778722	3L_13778722_SNP [dm3] 3L_13785622_SNP [dm6]	C	T	3.051e^-4	0.74	INTRON bru-3
2L	17031484	2L_17031484_SNP [dm3] 2L_17031484_SNP [dm6]	C	A	3.052e^-4	0.74	INTERGENIC
3R	9016088	3R_9016088_SNP [dm3] 3R_13190366_SNP [dm6]	T	A	3.064e^-4	0.74	DOWNSTREAM CG14380 INTERGENIC
2L	10721468	2L_10721468_SNP [dm3] 2L_10721468_SNP [dm6]	A	G	3.066e^-4	0.74	INTERGENIC
3R	15629646	3R_15629646_SNP [dm3] 3R_19803924_SNP [dm6]	T	C	3.067e^-4	0.74	INTRON bnl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18063781	X_18063781_SNP [dm3] X_18169748_SNP [dm6]	G	A	3.068e^-4	0.74	SYNONYMOUS_CODING Frq1
3R	10420212	3R_10420212_SNP [dm3] 3R_14594490_SNP [dm6]	A	T	3.075e^-4	0.74	INTRON stumps	regulatory region REDfly_CRMs
3R	20881753	3R_20881753_SNP [dm3] 3R_25056031_SNP [dm6]	T	A	3.076e^-4	0.74	UPSTREAM Unc-13-4B INTRON CG31111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9226756	3R_9226756_SNP [dm3] 3R_13401034_SNP [dm6]	C	A	3.081e^-4	0.74	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10026950	X_10026950_SNP [dm3] X_10132917_SNP [dm6]	T	A	3.085e^-4	0.74	INTRON CR44894 & 1 other
2L	1671579	2L_1671579_SNP [dm3] 2L_1671579_SNP [dm6]	T	G	3.087e^-4	0.74	INTRON chinmo
2R	20595942	2R_20595942_SNP [dm3] 2R_24708419_SNP [dm6]	G	A	3.087e^-4	0.74	INTRON Mid1	TF binding site mE1_TFBS_chinmo
3R	18531080	3R_18531080_SNP [dm3] 3R_22705358_SNP [dm6]	C	A	3.089e^-4	0.74	INTRON CG13842
2L	3179208	2L_3179208_SNP [dm3] 2L_3179208_SNP [dm6]	G	A	3.089e^-4	0.74	INTRON CG34393
3R	25612374	3R_25612374_DEL [dm3] 3R_29786652_DEL [dm6]	TA	T	3.091e^-4	0.74	INTRON kay
2L	7267967	2L_7267967_SNP [dm3] 2L_7267967_SNP [dm6]	C	G	3.096e^-4	0.74	INTRON Wnt4	TF binding site mE1_TFBS_cad
X	16479760	X_16479760_DEL [dm3] X_16585727_DEL [dm6]	CAAAATA	GT	3.098e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3L	1999145	3L_1999145_SNP [dm3] 3L_1999145_SNP [dm6]	G	A	3.099e^-4	0.74	INTERGENIC
3R	19919379	3R_19919379_SNP [dm3] 3R_24093657_SNP [dm6]	A	T	3.100e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3L	10599778	3L_10599778_SNP [dm3] 3L_10606678_SNP [dm6]	C	A	3.103e^-4	0.74	INTERGENIC
2L	1474127	2L_1474127_SNP [dm3] 2L_1474127_SNP [dm6]	C	A	3.105e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10182996	X_10182996_MNP [dm3] X_10288963_MNP [dm6]	CCACA	GGTGT	3.110e^-4	0.74	INTRON alpha-Man-I
3L	8651506	3L_8651506_SNP [dm3] 3L_8658406_SNP [dm6]	G	A	3.113e^-4	0.74	INTERGENIC
3L	12525543	3L_12525543_SNP [dm3] 3L_12532443_SNP [dm6]	G	A	3.114e^-4	0.74	SYNONYMOUS_CODING Tsf2	TF binding site mE1_TFBS_sens
2L	21795694	2L_21795694_DEL [dm3] 2L_21795694_DEL [dm6]	ATA	A	3.117e^-4	0.74	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	15448015	3R_15448015_SNP [dm3] 3R_19622293_SNP [dm6]	A	C	3.117e^-4	0.74	INTRON CG6231
2L	8312197	2L_8312197_SNP [dm3] 2L_8312197_SNP [dm6]	A	G	3.117e^-4	0.74	INTRON CG7806
2R	6823711	2R_6823711_SNP [dm3] 2R_10936206_SNP [dm6]	C	A	3.117e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15093587	2L_15093587_SNP [dm3] 2L_15093587_SNP [dm6]	G	T	3.135e^-4	0.74	SYNONYMOUS_CODING CG15270
2L	17884014	2L_17884014_SNP [dm3] 2L_17884014_SNP [dm6]	A	T	3.139e^-4	0.74	INTERGENIC
X	16479733	X_16479733_SNP [dm3] X_16585700_SNP [dm6]	C	G	3.140e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3L	10405662	3L_10405662_SNP [dm3] 3L_10412562_SNP [dm6]	C	T	3.146e^-4	0.74	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
X	8622823	X_8622823_SNP [dm3] X_8728790_SNP [dm6]	T	C	3.154e^-4	0.74	INTERGENIC
3R	10164512	3R_10164512_SNP [dm3] 3R_14338790_SNP [dm6]	C	T	3.157e^-4	0.74	INTRON NK7.1
2R	11475898	2R_11475898_SNP [dm3] 2R_15588393_SNP [dm6]	C	G	3.158e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1068158	X_1068158_SNP [dm3] X_1174125_SNP [dm6]	C	T	3.161e^-4	0.74	UTR_3_PRIME CG11384 DOWNSTREAM CG11378
3L	12638597	3L_12638597_SNP [dm3] 3L_12645497_SNP [dm6]	C	A	3.162e^-4	0.74	EXON CR32111
2L	12802180	2L_12802180_SNP [dm3] 2L_12802180_SNP [dm6]	A	T	3.163e^-4	0.74	INTERGENIC
2L	15338406	2L_15338406_DEL [dm3] 2L_15338406_DEL [dm6]	TAT	T	3.170e^-4	0.74	INTERGENIC
3L	5246322	3L_5246322_SNP [dm3] 3L_5253222_SNP [dm6]	A	G	3.171e^-4	0.74	INTRON shep
3R	9610035	3R_9610035_SNP [dm3] 3R_13784313_SNP [dm6]	T	G	3.178e^-4	0.74	INTRON Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5396833	3L_5396833_SNP [dm3] 3L_5403733_SNP [dm6]	C	T	3.178e^-4	0.74	INTERGENIC
3L	23054129	3L_23054129_DEL [dm3] 3L_23061029_DEL [dm6]	AG	A	3.179e^-4	0.74	INTERGENIC
3R	7307330	3R_7307330_DEL [dm3] 3R_11481608_DEL [dm6]	ACCCACAGC	A	3.188e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	14224386	X_14224386_SNP [dm3] X_14330353_SNP [dm6]	C	A	3.190e^-4	0.74	INTRON dpr8
3L	1210428	3L_1210428_SNP [dm3] 3L_1210428_SNP [dm6]	T	C	3.191e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
2L	12296927	2L_12296927_SNP [dm3] 2L_12296927_SNP [dm6]	A	G	3.207e^-4	0.74	INTRON aret
3R	13443584	3R_13443584_INS [dm3] 3R_17617862_INS [dm6]	A	AT	3.207e^-4	0.74	DOWNSTREAM tRNA:P:90Ca & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_zfh1
3L	17579947	3L_17579947_SNP [dm3] 3L_17586847_SNP [dm6]	T	G	3.217e^-4	0.74	INTRON Eip74EF
2L	3007505	2L_3007505_SNP [dm3] 2L_3007505_SNP [dm6]	G	T	3.221e^-4	0.74	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9320040	3R_9320040_SNP [dm3] 3R_13494318_SNP [dm6]	G	A	3.221e^-4	0.74	INTERGENIC
3L	5530484	3L_5530484_SNP [dm3] 3L_5537384_SNP [dm6]	T	A	3.221e^-4	0.74	INTERGENIC
3R	25158927	3R_25158927_SNP [dm3] 3R_29333205_SNP [dm6]	C	A	3.223e^-4	0.74	INTERGENIC
3L	16876800	3L_16876800_SNP [dm3] 3L_16883700_SNP [dm6]	C	T	3.224e^-4	0.74	INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6780512	3L_6780512_DEL [dm3] 3L_6787412_DEL [dm6]	CC	C	3.226e^-4	0.74	UPSTREAM CR45759 INTERGENIC
3R	9621264	3R_9621264_SNP [dm3] 3R_13795542_SNP [dm6]	G	A	3.233e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18432768	2L_18432768_SNP [dm3] 2L_18432768_SNP [dm6]	G	C	3.251e^-4	0.74	UPSTREAM CR44488 INTERGENIC
2R	20759963	2R_20759963_SNP [dm3] 2R_24872440_SNP [dm6]	A	C	3.253e^-4	0.74	NON_SYNONYMOUS_CODING CG16896 DOWNSTREAM Atf-2	TF binding site mE1_TFBS_sens
3L	17588315	3L_17588315_SNP [dm3] 3L_17595215_SNP [dm6]	T	G	3.255e^-4	0.74	INTRON Eip74EF
3R	19919360	3R_19919360_SNP [dm3] 3R_24093638_SNP [dm6]	T	A	3.256e^-4	0.74	INTRON 4EHP	TF binding site mE1_TFBS_HSA
3R	12959589	3R_12959589_SNP [dm3] 3R_17133867_SNP [dm6]	C	A	3.273e^-4	0.74	UPSTREAM CG31267 DOWNSTREAM CG31266 INTERGENIC
2R	10877669	2R_10877669_SNP [dm3] 2R_14990164_SNP [dm6]	C	T	3.275e^-4	0.74	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
X	1107770	X_1107770_SNP [dm3] X_1213737_SNP [dm6]	A	G	3.284e^-4	0.74	UTR_3_PRIME CG11398
2L	18570633	2L_18570633_SNP [dm3] 2L_18570633_SNP [dm6]	G	C	3.287e^-4	0.74	INTRON Pde11
2L	11238005	2L_11238005_SNP [dm3] 2L_11238005_SNP [dm6]	C	A	3.289e^-4	0.74	INTRON ab
3L	15686413	3L_15686413_SNP [dm3] 3L_15693313_SNP [dm6]	C	A	3.293e^-4	0.74	INTERGENIC	silencer mE1_HDAC_PRE
2L	17806748	2L_17806748_SNP [dm3] 2L_17806748_SNP [dm6]	T	C	3.295e^-4	0.74	INTRON CadN2
X	11169099	X_11169099_SNP [dm3] X_11275066_SNP [dm6]	G	A	3.298e^-4	0.74	INTRON CG44422
2R	15047843	2R_15047843_SNP [dm3] 2R_19160338_SNP [dm6]	C	G	3.312e^-4	0.74	SYNONYMOUS_CODING ena
X	16479779	X_16479779_SNP [dm3] X_16585746_SNP [dm6]	G	A	3.313e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
2L	7791119	2L_7791119_SNP [dm3] 2L_7791119_SNP [dm6]	G	T	3.315e^-4	0.74	UPSTREAM CG7149 DOWNSTREAM LKR INTERGENIC
2L	11419352	2L_11419352_SNP [dm3] 2L_11419352_SNP [dm6]	A	G	3.319e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9322835	2L_9322835_SNP [dm3] 2L_9322835_SNP [dm6]	G	A	3.320e^-4	0.74	INTERGENIC
3R	10955672	3R_10955672_SNP [dm3] 3R_15129950_SNP [dm6]	A	C	3.327e^-4	0.74	DOWNSTREAM mir-2493 INTRON CG42788
X	18063928	X_18063928_SNP [dm3] X_18169895_SNP [dm6]	C	T	3.344e^-4	0.74	INTRON Frq1
3L	10503058	3L_10503058_SNP [dm3] 3L_10509958_SNP [dm6]	G	A	3.345e^-4	0.74	INTRON A2bp1
2L	3380243	2L_3380243_DEL [dm3] 2L_3380243_DEL [dm6]	GAGG	G	3.345e^-4	0.74	INTERGENIC
X	11349829	X_11349829_SNP [dm3] X_11455796_SNP [dm6]	G	A	3.348e^-4	0.74	SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2L	10526389	2L_10526389_SNP [dm3] 2L_10526389_SNP [dm6]	T	C	3.359e^-4	0.74	INTERGENIC
2R	10877678	2R_10877678_SNP [dm3] 2R_14990173_SNP [dm6]	C	T	3.361e^-4	0.74	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
2R	6826959	2R_6826959_SNP [dm3] 2R_10939454_SNP [dm6]	T	C	3.370e^-4	0.74	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	20164044	3R_20164044_SNP [dm3] 3R_24338322_SNP [dm6]	C	G	3.372e^-4	0.74	SYNONYMOUS_CODING CG6432 UPSTREAM mir-1015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9024385	3R_9024385_SNP [dm3] 3R_13198663_SNP [dm6]	G	C	3.372e^-4	0.74	INTERGENIC
X	18070022	X_18070022_SNP [dm3] X_18175989_SNP [dm6]	C	A	3.373e^-4	0.74	INTERGENIC
3R	26070383	3R_26070383_SNP [dm3] 3R_30244661_SNP [dm6]	A	C	3.375e^-4	0.74	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24142499	3R_24142499_SNP [dm3] 3R_28316777_SNP [dm6]	T	G	3.380e^-4	0.74	INTERGENIC
3R	9498982	3R_9498982_SNP [dm3] 3R_13673260_SNP [dm6]	A	T	3.385e^-4	0.74	UTR_5_PRIME Task6 INTRON Task6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	18057341	X_18057341_SNP [dm3] X_18163308_SNP [dm6]	T	C	3.385e^-4	0.74	INTRON Frq1
3R	26657830	3R_26657830_SNP [dm3] 3R_30832108_SNP [dm6]	A	T	3.389e^-4	0.74	INTRON CG15544
3R	9299382	3R_9299382_INS [dm3] 3R_13473660_INS [dm6]	G	GAGT	3.389e^-4	0.74	INTERGENIC
3R	9863839	3R_9863839_SNP [dm3] 3R_14038117_SNP [dm6]	G	A	3.390e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6645771	3R_6645771_SNP [dm3] 3R_10820049_SNP [dm6]	A	G	3.392e^-4	0.74	INTERGENIC
2R	7947466	2R_7947466_SNP [dm3] 2R_12059961_SNP [dm6]	C	T	3.392e^-4	0.74	INTRON Drep-3
3L	10405657	3L_10405657_SNP [dm3] 3L_10412557_SNP [dm6]	C	A	3.396e^-4	0.74	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	7830519	3L_7830519_SNP [dm3] 3L_7837419_SNP [dm6]	A	T	3.401e^-4	0.74	INTRON Pdp1	regulatory region REDfly_CRMs
3R	18595578	3R_18595578_SNP [dm3] 3R_22769856_SNP [dm6]	G	A	3.407e^-4	0.74	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
2R	6956705	2R_6956705_SNP [dm3] 2R_11069200_SNP [dm6]	T	A	3.407e^-4	0.74	INTRON luna
2L	9236058	2L_9236058_SNP [dm3] 2L_9236058_SNP [dm6]	G	T	3.408e^-4	0.74	DOWNSTREAM tRNA:CR31885 INTRON tai
2R	20173385	2R_20173385_SNP [dm3] 2R_24285862_SNP [dm6]	A	C	3.416e^-4	0.74	INTRON nvy	TF binding site mE1_TFBS_chinmo
3R	25580177	3R_25580177_SNP [dm3] 3R_29754455_SNP [dm6]	A	G	3.418e^-4	0.74	UTR_3_PRIME yata DOWNSTREAM CR44953
X	9017691	X_9017691_SNP [dm3] X_9123658_SNP [dm6]	C	T	3.420e^-4	0.74	UTR_3_PRIME fend
3R	9226818	3R_9226818_SNP [dm3] 3R_13401096_SNP [dm6]	T	A	3.420e^-4	0.74	INTRON CG9796	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	1093849	X_1093849_DEL [dm3] X_1199816_DEL [dm6]	AA	A	3.424e^-4	0.74	INTRON CG14625
X	10442676	X_10442676_SNP [dm3] X_10548643_SNP [dm6]	A	G	3.426e^-4	0.74	INTRON spri
3R	6009263	3R_6009263_SNP [dm3] 3R_10183541_SNP [dm6]	A	T	3.428e^-4	0.74	INTRON CG12814
2L	17884013	2L_17884013_SNP [dm3] 2L_17884013_SNP [dm6]	C	T	3.429e^-4	0.74	INTERGENIC
3R	13462744	3R_13462744_SNP [dm3] 3R_17637022_SNP [dm6]	C	T	3.438e^-4	0.74	INTRON CG43175
X	4621422	X_4621422_SNP [dm3] X_4727389_SNP [dm6]	C	T	3.446e^-4	0.74	SYNONYMOUS_CODING Proc-R
2R	17730843	2R_17730843_SNP [dm3] 2R_21843338_SNP [dm6]	A	G	3.450e^-4	0.74	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	1430353	X_1430353_SNP [dm3] X_1536320_SNP [dm6]	A	G	3.459e^-4	0.74	INTRON Mur2B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	16479822	X_16479822_DEL [dm3] X_16585789_DEL [dm6]	ATTTAA	A	3.468e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
3L	10169363	3L_10169363_SNP [dm3] 3L_10176263_SNP [dm6]	T	C	3.472e^-4	0.74	INTRON dpr10
2R	13741136	2R_13741136_SNP [dm3] 2R_17853631_SNP [dm6]	A	T	3.474e^-4	0.74	SYNONYMOUS_CODING CG30323 INTRON olf186-F
3R	25979356	3R_25979356_SNP [dm3] 3R_30153634_SNP [dm6]	T	A	3.482e^-4	0.74	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	18432789	2L_18432789_SNP [dm3] 2L_18432789_SNP [dm6]	A	G	3.482e^-4	0.74	UPSTREAM CR44488 INTERGENIC
3R	10136977	3R_10136977_SNP [dm3] 3R_14311255_SNP [dm6]	G	A	3.488e^-4	0.74	INTRON CG31321
3L	9557598	3L_9557598_SNP [dm3] 3L_9564498_SNP [dm6]	G	T	3.490e^-4	0.74	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14129612	2R_14129612_SNP [dm3] 2R_18242107_SNP [dm6]	G	A	3.502e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14992189	2L_14992189_SNP [dm3] 2L_14992189_SNP [dm6]	C	T	3.506e^-4	0.74	INTRON mol
2L	7252487	2L_7252487_SNP [dm3] 2L_7252487_SNP [dm6]	T	C	3.507e^-4	0.74	SYNONYMOUS_CODING CG13786
2L	9336007	2L_9336007_SNP [dm3] 2L_9336007_SNP [dm6]	C	T	3.507e^-4	0.74	INTRON Eaat1
X	782357	X_782357_SNP [dm3] X_888324_SNP [dm6]	C	T	3.513e^-4	0.74	INTRON CG43867
X	14573015	X_14573015_SNP [dm3] X_14678982_SNP [dm6]	T	G	3.514e^-4	0.74	UPSTREAM CG5321 INTERGENIC
3L	5077990	3L_5077990_DEL [dm3] 3L_5077990_DEL [dm6]	TGACATACAGGTACTACAAA...	T	3.520e^-4	0.74	INTRON Con
3L	12092245	3L_12092245_SNP [dm3] 3L_12099145_SNP [dm6]	C	T	3.523e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16479771	X_16479771_SNP [dm3] X_16585738_SNP [dm6]	G	T	3.525e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl
2L	13945188	2L_13945188_SNP [dm3] 2L_13945188_SNP [dm6]	C	T	3.529e^-4	0.74	UTR_3_PRIME CG16884 INTRON Ance-3	TF binding site mE1_TFBS_cad
3R	19565130	3R_19565130_SNP [dm3] 3R_23739408_SNP [dm6]	C	G	3.530e^-4	0.74	INTRON Hmgcr
2L	9416427	2L_9416427_SNP [dm3] 2L_9416427_SNP [dm6]	G	A	3.536e^-4	0.74	UPSTREAM Mco1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13621449	X_13621449_SNP [dm3] X_13727416_SNP [dm6]	T	A	3.537e^-4	0.74	UTR_3_PRIME g DOWNSTREAM g & 1 other
3R	9325109	3R_9325109_SNP [dm3] 3R_13499387_SNP [dm6]	C	A	3.538e^-4	0.74	INTERGENIC
3L	11657996	3L_11657996_SNP [dm3] 3L_11664896_SNP [dm6]	C	T	3.541e^-4	0.74	INTRON CG32085
2R	2876797	2R_2876797_SNP [dm3] 2R_6989292_SNP [dm6]	C	T	3.549e^-4	0.74	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
X	14370674	X_14370674_SNP [dm3] X_14476641_SNP [dm6]	T	G	3.553e^-4	0.74	INTRON CG9411
2R	13121353	2R_13121353_SNP [dm3] 2R_17233848_SNP [dm6]	C	T	3.555e^-4	0.74	INTRON mbl
X	1086172	X_1086172_SNP [dm3] X_1192139_SNP [dm6]	C	A	3.558e^-4	0.74	INTRON CG11380
X	1095865	X_1095865_SNP [dm3] X_1201832_SNP [dm6]	G	T	3.558e^-4	0.74	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_chinmo
2L	17805654	2L_17805654_SNP [dm3] 2L_17805654_SNP [dm6]	A	T	3.559e^-4	0.74	INTRON CadN2
3R	25781092	3R_25781092_SNP [dm3] 3R_29955370_SNP [dm6]	C	G	3.561e^-4	0.74	INTRON TkR99D
3L	2384913	3L_2384913_SNP [dm3] 3L_2384913_SNP [dm6]	T	C	3.564e^-4	0.74	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11350132	X_11350132_SNP [dm3] X_11456099_SNP [dm6]	G	C	3.566e^-4	0.74	SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
3L	1210417	3L_1210417_SNP [dm3] 3L_1210417_SNP [dm6]	G	C	3.568e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
2L	4419532	2L_4419532_SNP [dm3] 2L_4419532_SNP [dm6]	A	T	3.570e^-4	0.74	UPSTREAM tRNA:CR31963 INTRON CG15431
3R	10411636	3R_10411636_INS [dm3] 3R_14585914_INS [dm6]	A	AA	3.576e^-4	0.74	INTRON stumps	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14152708	2R_14152708_DEL [dm3] 2R_18265203_DEL [dm6]	TTTT	CAC	3.583e^-4	0.74	INTERGENIC
2L	10721480	2L_10721480_SNP [dm3] 2L_10721480_SNP [dm6]	T	C	3.583e^-4	0.74	INTERGENIC
2R	13985789	2R_13985789_SNP [dm3] 2R_18098284_SNP [dm6]	A	G	3.591e^-4	0.74	NON_SYNONYMOUS_CODING CG5098
2R	13985553	2R_13985553_SNP [dm3] 2R_18098048_SNP [dm6]	G	A	3.592e^-4	0.74	SYNONYMOUS_CODING CG5098	TF binding site mE1_TFBS_sens
2L	9894863	2L_9894863_SNP [dm3] 2L_9894863_SNP [dm6]	C	T	3.594e^-4	0.74	UPSTREAM snoRNA:U14:30Eb & 3 others INTRON Uhg2 EXON snoRNA:Me18S-A1576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12032479	2R_12032479_SNP [dm3] 2R_16144974_SNP [dm6]	C	T	3.596e^-4	0.74	SPLICE_SITE_REGION Aats-cys DOWNSTREAM Ext2 INTRON Aats-cys
X	20507465	X_20507465_SNP [dm3] X_20636438_SNP [dm6]	T	A	3.599e^-4	0.74	INTERGENIC
3L	12200931	3L_12200931_SNP [dm3] 3L_12207831_SNP [dm6]	G	A	3.599e^-4	0.74	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	3.600e^-4	0.74	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13837688	2L_13837688_SNP [dm3] 2L_13837688_SNP [dm6]	G	A	3.603e^-4	0.74	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26067630	3R_26067630_INS [dm3] 3R_30241908_INS [dm6]	T	TTAT	3.604e^-4	0.74	INTRON CG9737	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18543905	3L_18543905_SNP [dm3] 3L_18550805_SNP [dm6]	C	T	3.612e^-4	0.74	INTERGENIC
2L	4520094	2L_4520094_SNP [dm3] 2L_4520094_SNP [dm6]	A	T	3.617e^-4	0.74	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	1999980	3L_1999980_SNP [dm3] 3L_1999980_SNP [dm6]	A	C	3.619e^-4	0.74	INTERGENIC
X	7438968	X_7438968_SNP [dm3] X_7544935_SNP [dm6]	A	G	3.622e^-4	0.74	INTRON CG32719	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9047596	2L_9047596_SNP [dm3] 2L_9047596_SNP [dm6]	C	G	3.628e^-4	0.74	INTERGENIC
3L	1210412	3L_1210412_INS [dm3] 3L_1210412_INS [dm6]	C	TATATATATT	3.629e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3R	12956454	3R_12956454_SNP [dm3] 3R_17130732_SNP [dm6]	C	G	3.629e^-4	0.74	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC
2R	20757841	2R_20757841_SNP [dm3] 2R_24870318_SNP [dm6]	A	G	3.630e^-4	0.74	NON_SYNONYMOUS_CODING Atf-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11274966	2L_11274966_SNP [dm3] 2L_11274966_SNP [dm6]	A	G	3.632e^-4	0.74	NON_SYNONYMOUS_CODING cana	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18057278	X_18057278_SNP [dm3] X_18163245_SNP [dm6]	G	A	3.635e^-4	0.74	INTRON Frq1
3R	26174252	3R_26174252_DEL [dm3] 3R_30348530_DEL [dm6]	GG	G	3.640e^-4	0.74	INTRON hdc
3L	8930349	3L_8930349_SNP [dm3] 3L_8937249_SNP [dm6]	T	C	3.640e^-4	0.74	UTR_3_PRIME orb2 UPSTREAM CG43783 INTRON CG43783
3R	26074512	3R_26074512_SNP [dm3] 3R_30248790_SNP [dm6]	C	G	3.641e^-4	0.74	UPSTREAM tRNA:CR31383 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	16442519	2L_16442519_INS [dm3] 2L_16442519_INS [dm6]	T	CA	3.641e^-4	0.74	INTRON CG5888
2L	18219708	2L_18219708_SNP [dm3] 2L_18219708_SNP [dm6]	A	C	3.642e^-4	0.74	INTRON CG42750
3L	10604693	3L_10604693_SNP [dm3] 3L_10611593_SNP [dm6]	G	A	3.643e^-4	0.74	INTERGENIC
3L	17238671	3L_17238671_SNP [dm3] 3L_17245571_SNP [dm6]	C	T	3.643e^-4	0.74	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
2R	7947465	2R_7947465_SNP [dm3] 2R_12059960_SNP [dm6]	G	A	3.644e^-4	0.74	INTRON Drep-3
3L	5525990	3L_5525990_SNP [dm3] 3L_5532890_SNP [dm6]	A	G	3.644e^-4	0.74	INTERGENIC
2R	11053490	2R_11053490_SNP [dm3] 2R_15165985_SNP [dm6]	G	A	3.645e^-4	0.74	INTRON igl
3R	25945846	3R_25945846_DEL [dm3] 3R_30120124_DEL [dm6]	AA	A	3.650e^-4	0.74	INTRON sima	TF binding site mE1_TFBS_chinmo
2L	1419068	2L_1419068_SNP [dm3] 2L_1419068_SNP [dm6]	T	A	3.650e^-4	0.74	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	6274837	X_6274837_INS [dm3] X_6380804_INS [dm6]	T	TTAAGGAAGCTAA...	3.650e^-4	0.74	INTERGENIC
3R	20170403	3R_20170403_DEL [dm3] 3R_24344681_DEL [dm6]	TTTATACTTTTT...	T	3.652e^-4	0.74	UTR_3_PRIME CG5746 DOWNSTREAM Ms
2R	14699534	2R_14699534_SNP [dm3] 2R_18812029_SNP [dm6]	T	C	3.653e^-4	0.74	UPSTREAM CG15096 INTRON CG15096	TF binding site mE1_TFBS_HSA
X	19274499	X_19274499_SNP [dm3] X_19380466_SNP [dm6]	T	C	3.653e^-4	0.74	INTRON kek5
3L	2621403	3L_2621403_SNP [dm3] 3L_2621403_SNP [dm6]	C	G	3.657e^-4	0.74	INTRON Pxn
2L	12093575	2L_12093575_DEL [dm3] 2L_12093575_DEL [dm6]	TG	T	3.660e^-4	0.74	UPSTREAM Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26077314	3R_26077314_SNP [dm3] 3R_30251592_SNP [dm6]	C	T	3.667e^-4	0.74	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	12032477	2R_12032477_SNP [dm3] 2R_16144972_SNP [dm6]	G	T	3.674e^-4	0.74	SPLICE_SITE_REGION Aats-cys DOWNSTREAM Ext2 INTRON Aats-cys
3L	12831031	3L_12831031_SNP [dm3] 3L_12837931_SNP [dm6]	T	G	3.676e^-4	0.74	INTRON CG10960
2L	9343575	2L_9343575_SNP [dm3] 2L_9343575_SNP [dm6]	A	G	3.676e^-4	0.74	NON_SYNONYMOUS_CODING CG3748
2R	2854476	2R_2854476_SNP [dm3] 2R_6966971_SNP [dm6]	G	A	3.678e^-4	0.74	INTRON mim & 1 other
3R	9174593	3R_9174593_SNP [dm3] 3R_13348871_SNP [dm6]	T	C	3.680e^-4	0.74	INTERGENIC
2L	9414765	2L_9414765_SNP [dm3] 2L_9414765_SNP [dm6]	C	T	3.680e^-4	0.74	INTRON Shawl
3L	5532551	3L_5532551_SNP [dm3] 3L_5539451_SNP [dm6]	A	C	3.683e^-4	0.74	SYNONYMOUS_CODING CG10625 UTR_3_PRIME CG10625	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11350503	X_11350503_INS [dm3] X_11456470_INS [dm6]	A	ATGATGA	3.694e^-4	0.74
3L	12638578	3L_12638578_SNP [dm3] 3L_12645478_SNP [dm6]	A	T	3.695e^-4	0.74	EXON CR32111
X	11355930	X_11355930_DEL [dm3] X_11461897_DEL [dm6]	ACTGAAAAATTAACCCTCCG...	G	3.696e^-4	0.74	INTRON CG43155	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16480048	X_16480048_INS [dm3] X_16586015_INS [dm6]	T	TT	3.696e^-4	0.74	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18788861	2R_18788861_SNP [dm3] 2R_22901338_SNP [dm6]	T	C	3.697e^-4	0.74	INTRON nahoda
2L	18433640	2L_18433640_DEL [dm3] 2L_18433640_DEL [dm6]	CC	C	3.704e^-4	0.74	EXON CR44488
2R	10141106	2R_10141106_SNP [dm3] 2R_14253601_SNP [dm6]	A	G	3.704e^-4	0.74	SYNONYMOUS_CODING Hsc70-5
3L	14186762	3L_14186762_SNP [dm3] 3L_14193662_SNP [dm6]	G	A	3.705e^-4	0.74	INTRON nuf	TF binding site BDTNP1_TFBS_twi
3L	1210427	3L_1210427_SNP [dm3] 3L_1210427_SNP [dm6]	T	G	3.709e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
X	10182982	X_10182982_DEL [dm3] X_10288949_DEL [dm6]	AACACCACCACCA...	G	3.712e^-4	0.74	INTRON alpha-Man-I
3L	1210418	3L_1210418_INS [dm3] 3L_1210418_INS [dm6]	C	CAA	3.714e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
3L	4081369	3L_4081369_SNP [dm3] 3L_4081369_SNP [dm6]	C	T	3.718e^-4	0.74	INTRON Gad1
2L	15421145	2L_15421145_SNP [dm3] 2L_15421145_SNP [dm6]	A	C	3.737e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18057280	X_18057280_SNP [dm3] X_18163247_SNP [dm6]	C	A	3.741e^-4	0.74	INTRON Frq1
2L	8094331	2L_8094331_SNP [dm3] 2L_8094331_SNP [dm6]	A	T	3.751e^-4	0.74	INTRON Bsg	TF binding site BDTNP1_TFBS_twi
2R	13051650	2R_13051650_SNP [dm3] 2R_17164145_SNP [dm6]	C	T	3.759e^-4	0.74	DOWNSTREAM CG10953 INTERGENIC
2R	8471642	2R_8471642_SNP [dm3] 2R_12584137_SNP [dm6]	C	A	3.760e^-4	0.74	NON_SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	16107462	2L_16107462_SNP [dm3] 2L_16107462_SNP [dm6]	A	G	3.761e^-4	0.74	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20402573	2L_20402573_SNP [dm3] 2L_20402573_SNP [dm6]	G	T	3.761e^-4	0.74	INTRON CG10947
3L	17613150	3L_17613150_SNP [dm3] 3L_17620050_SNP [dm6]	G	T	3.762e^-4	0.74	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9414773	2L_9414773_SNP [dm3] 2L_9414773_SNP [dm6]	A	G	3.764e^-4	0.74	INTRON Shawl
3R	7868332	3R_7868332_SNP [dm3] 3R_12042610_SNP [dm6]	G	A	3.767e^-4	0.74	UTR_3_PRIME CG14736
3L	13353779	3L_13353779_SNP [dm3] 3L_13360679_SNP [dm6]	A	C	3.768e^-4	0.74	INTERGENIC
2R	17605913	2R_17605913_SNP [dm3] 2R_21718408_SNP [dm6]	A	G	3.769e^-4	0.74	NON_SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7255513	2R_7255513_SNP [dm3] 2R_11368008_SNP [dm6]	T	G	3.769e^-4	0.74	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8051067	2L_8051067_SNP [dm3] 2L_8051067_SNP [dm6]	C	A	3.772e^-4	0.74	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9027477	2L_9027477_SNP [dm3] 2L_9027477_SNP [dm6]	G	A	3.779e^-4	0.74	INTRON CG9582 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14898280	2R_14898280_SNP [dm3] 2R_19010775_SNP [dm6]	C	T	3.780e^-4	0.74	INTERGENIC
3L	13221229	3L_13221229_SNP [dm3] 3L_13228129_SNP [dm6]	G	A	3.783e^-4	0.74	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	4576837	X_4576837_SNP [dm3] X_4682804_SNP [dm6]	G	A	3.787e^-4	0.74	SYNONYMOUS_CODING Pp2C1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18790237	2R_18790237_SNP [dm3] 2R_22902714_SNP [dm6]	T	A	3.788e^-4	0.74	INTRON nahoda
2R	18746857	2R_18746857_DEL [dm3] 2R_22859334_DEL [dm6]	CATTGCAC	C	3.791e^-4	0.74	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2623868	2L_2623868_SNP [dm3] 2L_2623868_SNP [dm6]	C	A	3.793e^-4	0.74	INTERGENIC
X	16558408	X_16558408_SNP [dm3] X_16664375_SNP [dm6]	C	G	3.793e^-4	0.74	NON_SYNONYMOUS_CODING CG15865 INTRON r
2R	19180344	2R_19180344_SNP [dm3] 2R_23292821_SNP [dm6]	C	T	3.796e^-4	0.74	INTERGENIC
2R	6826955	2R_6826955_SNP [dm3] 2R_10939450_SNP [dm6]	A	C	3.798e^-4	0.74	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	19919269	3R_19919269_SNP [dm3] 3R_24093547_SNP [dm6]	T	C	3.801e^-4	0.74	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9048011	2L_9048011_SNP [dm3] 2L_9048011_SNP [dm6]	G	C	3.801e^-4	0.74	INTERGENIC
3L	8974373	3L_8974373_SNP [dm3] 3L_8981273_SNP [dm6]	T	C	3.804e^-4	0.74	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
X	18063466	X_18063466_SNP [dm3] X_18169433_SNP [dm6]	C	T	3.810e^-4	0.74	INTRON Frq1
3R	26074213	3R_26074213_SNP [dm3] 3R_30248491_SNP [dm6]	G	C	3.820e^-4	0.74	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5530467	3L_5530467_SNP [dm3] 3L_5537367_SNP [dm6]	G	A	3.823e^-4	0.74	INTERGENIC
2R	6896965	2R_6896965_SNP [dm3] 2R_11009460_SNP [dm6]	G	A	3.823e^-4	0.74	INTRON luna	TF binding site mE1_TFBS_inv
2L	16731213	2L_16731213_SNP [dm3] 2L_16731213_SNP [dm6]	C	T	3.830e^-4	0.74	UTR_3_PRIME Prosbeta4 UPSTREAM CG17996 DOWNSTREAM Prosbeta4 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1210430	3L_1210430_SNP [dm3] 3L_1210430_SNP [dm6]	C	T	3.831e^-4	0.74	UPSTREAM LysC DOWNSTREAM LysD INTRON mwh
X	14218080	X_14218080_SNP [dm3] X_14324047_SNP [dm6]	T	C	3.848e^-4	0.74	INTRON dpr8
2L	6042336	2L_6042336_SNP [dm3] 2L_6042336_SNP [dm6]	T	G	3.850e^-4	0.74	SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6862081	2R_6862081_MNP [dm3] 2R_10974576_MNP [dm6]	TAC	GTA	3.851e^-4	0.74	INTERGENIC
2R	16718141	2R_16718141_SNP [dm3] 2R_20830636_SNP [dm6]	C	A	3.852e^-4	0.74	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	852523	3L_852523_SNP [dm3] 3L_852523_SNP [dm6]	T	A	3.852e^-4	0.74	UTR_3_PRIME CG13890 DOWNSTREAM dpr20
2L	1672511	2L_1672511_SNP [dm3] 2L_1672511_SNP [dm6]	T	A	3.854e^-4	0.74	INTRON chinmo
2R	19285277	2R_19285277_SNP [dm3] 2R_23397754_SNP [dm6]	G	A	3.855e^-4	0.74	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
3R	26072791	3R_26072791_SNP [dm3] 3R_30247069_SNP [dm6]	A	C	3.856e^-4	0.74	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
3R	26072793	3R_26072793_SNP [dm3] 3R_30247071_SNP [dm6]	A	T	3.856e^-4	0.74	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
2R	18286617	2R_18286617_SNP [dm3] 2R_22399112_SNP [dm6]	C	T	3.859e^-4	0.74	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	7872446	3R_7872446_SNP [dm3] 3R_12046724_SNP [dm6]	C	T	3.860e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12638413	3L_12638413_SNP [dm3] 3L_12645313_SNP [dm6]	G	A	3.861e^-4	0.74	SPLICE_SITE_REGION CR32111 INTRON CR32111
2R	9250011	2R_9250011_SNP [dm3] 2R_13362506_SNP [dm6]	A	G	3.865e^-4	0.74	EXON CR45312	TF binding site BDTNP1_TFBS_dl
X	15462692	X_15462692_INS [dm3] X_15568659_INS [dm6]	A	AGA	3.870e^-4	0.74	UPSTREAM CG7860 INTERGENIC
2L	10721404	2L_10721404_SNP [dm3] 2L_10721404_SNP [dm6]	C	T	3.870e^-4	0.74	INTERGENIC
X	4572390	X_4572390_SNP [dm3] X_4678357_SNP [dm6]	C	T	3.875e^-4	0.74	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12184224	3L_12184224_SNP [dm3] 3L_12191124_SNP [dm6]	C	T	3.882e^-4	0.74	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_sens
2L	2936370	2L_2936370_SNP [dm3] 2L_2936370_SNP [dm6]	T	A	3.891e^-4	0.74	INTRON lilli
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	3.895e^-4	0.74	UPSTREAM Ten-a INTRON Ten-a
X	1645614	X_1645614_SNP [dm3] X_1751581_SNP [dm6]	G	C	3.895e^-4	0.74	UPSTREAM Scgdelta INTRON Scgdelta
X	7977166	X_7977166_SNP [dm3] X_8083133_SNP [dm6]	C	T	3.896e^-4	0.74	DOWNSTREAM CG2256 INTERGENIC
2L	9011470	2L_9011470_SNP [dm3] 2L_9011470_SNP [dm6]	T	C	3.905e^-4	0.74	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2R	3812910	2R_3812910_SNP [dm3] 2R_7925405_SNP [dm6]	A	T	3.906e^-4	0.74	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14992268	2L_14992268_SNP [dm3] 2L_14992268_SNP [dm6]	G	A	3.913e^-4	0.74	INTRON mol
3R	9197382	3R_9197382_SNP [dm3] 3R_13371660_SNP [dm6]	T	C	3.913e^-4	0.74	UPSTREAM CG34309 INTRON Lip3
X	1089214	X_1089214_SNP [dm3] X_1195181_SNP [dm6]	C	T	3.915e^-4	0.74	NON_SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23514236	3R_23514236_SNP [dm3] 3R_27688514_SNP [dm6]	G	A	3.915e^-4	0.74	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	3002053	2L_3002053_SNP [dm3] 2L_3002053_SNP [dm6]	A	G	3.918e^-4	0.74	INTRON CG17265
2R	19488455	2R_19488455_SNP [dm3] 2R_23600932_SNP [dm6]	C	T	3.928e^-4	0.74	UTR_3_PRIME IM18 & 1 other UPSTREAM CG42560 & 1 other	TF binding site mE1_TFBS_cad
X	1643553	X_1643553_SNP [dm3] X_1749520_SNP [dm6]	G	A	3.932e^-4	0.74	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	3.937e^-4	0.74	INTRON Hmgcr
3L	12256519	3L_12256519_SNP [dm3] 3L_12263419_SNP [dm6]	T	C	3.941e^-4	0.74	INTRON app
2L	3605858	2L_3605858_SNP [dm3] 2L_3605858_SNP [dm6]	T	C	3.945e^-4	0.74	SYNONYMOUS_CODING odd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7881482	3R_7881482_SNP [dm3] 3R_12055760_SNP [dm6]	T	A	3.947e^-4	0.74	INTERGENIC
2R	10877585	2R_10877585_SNP [dm3] 2R_14990080_SNP [dm6]	T	G	3.949e^-4	0.74	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
2R	4101991	2R_4101991_SNP [dm3] 2R_8214486_SNP [dm6]	C	A	3.955e^-4	0.74	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6827482	2R_6827482_SNP [dm3] 2R_10939977_SNP [dm6]	T	C	3.964e^-4	0.74	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	25796033	3R_25796033_SNP [dm3] 3R_29970311_SNP [dm6]	T	C	3.968e^-4	0.74	UPSTREAM TkR99D INTERGENIC
2R	14152660	2R_14152660_SNP [dm3] 2R_18265155_SNP [dm6]	G	A	3.970e^-4	0.74	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

TotalVariants_X phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results