DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.426e^-24)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09802

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.7135	0.0995

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1882 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	7300051	3L_7300051_SNP [dm3] 3L_7306951_SNP [dm6]	T	G	1.640e^-6	0.928	INTRON unc-13-4A
X	18531878	X_18531878_INS [dm3] X_18637845_INS [dm6]	G	GAGG	1.746e^-6	0.928	INTRON Rip11	TF binding site mE1_TFBS_cad
2R	18066056	2R_18066056_SNP [dm3] 2R_22178551_SNP [dm6]	G	C	2.378e^-6	0.928	INTRON CG11170	TF binding site BDTNP1_TFBS_twi
2L	10774719	2L_10774719_DEL [dm3] 2L_10774719_DEL [dm6]	TGCAGCAT	T	2.381e^-6	0.928	INTRON CG31869
3R	15854656	3R_15854656_SNP [dm3] 3R_20028934_SNP [dm6]	G	T	3.256e^-6	0.928	SYNONYMOUS_CODING CG4854 UPSTREAM CG4424 DOWNSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15177463	3R_15177463_SNP [dm3] 3R_19351741_SNP [dm6]	A	C	3.574e^-6	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18066632	2R_18066632_SNP [dm3] 2R_22179127_SNP [dm6]	C	A	5.580e^-6	0.928	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
3R	15588617	3R_15588617_SNP [dm3] 3R_19762895_SNP [dm6]	C	A	5.825e^-6	0.928	INTRON GluClalpha
X	20464341	X_20464341_DEL [dm3] X_20593314_DEL [dm6]	TTT	T	6.844e^-6	0.928	INTRON RunxA
X	20464347	X_20464347_INS [dm3] X_20593320_INS [dm6]	A	AA	6.844e^-6	0.928	INTRON RunxA
X	13508094	X_13508094_SNP [dm3] X_13614061_SNP [dm6]	C	A	7.219e^-6	0.928	UTR_3_PRIME tth DOWNSTREAM BthD
3L	17480449	3L_17480449_SNP [dm3] 3L_17487349_SNP [dm6]	C	T	8.090e^-6	0.928	UPSTREAM Oatp74D INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14761088	2R_14761088_SNP [dm3] 2R_18873583_SNP [dm6]	G	A	8.240e^-6	0.928	INTERGENIC
X	20643540	X_20643540_SNP [dm3] X_20772513_SNP [dm6]	A	G	1.074e^-5	0.928	UTR_3_PRIME shakB
3L	21875246	3L_21875246_DEL [dm3] 3L_21882146_DEL [dm6]	TAATT	T	1.236e^-5	0.928	INTRON mub
X	20464339	X_20464339_SNP [dm3] X_20593312_SNP [dm6]	T	C	1.303e^-5	0.928	INTRON RunxA
3R	19406737	3R_19406737_SNP [dm3] 3R_23581015_SNP [dm6]	T	G	1.324e^-5	0.928	DOWNSTREAM beat-IV INTERGENIC
3R	15177422	3R_15177422_SNP [dm3] 3R_19351700_SNP [dm6]	G	A	1.406e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	20017198	X_20017198_SNP [dm3] X_20123165_SNP [dm6]	T	A	1.454e^-5	0.928	DOWNSTREAM CG34331 INTRON CG34331
3R	19406738	3R_19406738_SNP [dm3] 3R_23581016_SNP [dm6]	T	A	1.561e^-5	0.928	DOWNSTREAM beat-IV INTERGENIC
2L	6891014	2L_6891014_SNP [dm3] 2L_6891014_SNP [dm6]	A	T	1.653e^-5	0.928	INTRON Nlg2
3R	19406716	3R_19406716_DEL [dm3] 3R_23580994_DEL [dm6]	AGTTATTTAAGGAATACTTG...	A	1.701e^-5	0.928	DOWNSTREAM beat-IV INTERGENIC
2R	14761004	2R_14761004_SNP [dm3] 2R_18873499_SNP [dm6]	G	T	1.706e^-5	0.928	INTERGENIC
2L	12379846	2L_12379846_SNP [dm3] 2L_12379846_SNP [dm6]	G	T	1.745e^-5	0.928	INTRON bru-2
X	20464273	X_20464273_SNP [dm3] X_20593246_SNP [dm6]	A	C	1.768e^-5	0.928	INTRON RunxA
3R	24021172	3R_24021172_SNP [dm3] 3R_28195450_SNP [dm6]	T	G	1.953e^-5	0.928	INTRON CG34354
2L	15093810	2L_15093810_SNP [dm3] 2L_15093810_SNP [dm6]	C	A	1.999e^-5	0.928	INTRON CG15270
3L	7291511	3L_7291511_SNP [dm3] 3L_7298411_SNP [dm6]	T	G	2.023e^-5	0.928	INTRON unc-13-4A
X	19387046	X_19387046_SNP [dm3] X_19493013_SNP [dm6]	G	A	2.089e^-5	0.928	DOWNSTREAM CG12204 INTRON CG12203	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3890661	X_3890661_DEL [dm3] X_3996628_DEL [dm6]	TGCCCATTGATACGT...	T	2.224e^-5	0.928	INTERGENIC
X	13449367	X_13449367_SNP [dm3] X_13555334_SNP [dm6]	A	T	2.237e^-5	0.928	UTR_5_PRIME CG11816
X	4223747	X_4223747_INS [dm3] X_4329714_INS [dm6]	C	CC	2.290e^-5	0.928	UPSTREAM CG12693 INTRON norpA
3L	7300053	3L_7300053_SNP [dm3] 3L_7306953_SNP [dm6]	G	A	2.376e^-5	0.928	INTRON unc-13-4A
3L	18117510	3L_18117510_SNP [dm3] 3L_18124410_SNP [dm6]	G	A	2.431e^-5	0.928	INTERGENIC
3L	947106	3L_947106_SNP [dm3] 3L_947106_SNP [dm6]	C	A	2.436e^-5	0.928	INTRON Glut1
2L	16011789	2L_16011789_SNP [dm3] 2L_16011789_SNP [dm6]	A	G	2.445e^-5	0.928	INTRON beat-Ic
X	18255037	X_18255037_SNP [dm3] X_18361004_SNP [dm6]	A	G	2.481e^-5	0.928	INTRON CG6106
3L	9525834	3L_9525834_SNP [dm3] 3L_9532734_SNP [dm6]	T	C	2.560e^-5	0.928	INTERGENIC
2L	3142277	2L_3142277_SNP [dm3] 2L_3142277_SNP [dm6]	A	G	2.703e^-5	0.928	INTRON toc
3L	21869633	3L_21869633_SNP [dm3] 3L_21876533_SNP [dm6]	G	A	2.737e^-5	0.928	INTRON mub
X	4284571	X_4284571_SNP [dm3] X_4390538_SNP [dm6]	A	G	2.754e^-5	0.928	INTRON CR32773	TF binding site mE1_TFBS_Kr
2L	14346737	2L_14346737_INS [dm3] 2L_14346737_INS [dm6]	A	AA	2.759e^-5	0.928	UPSTREAM Send2 DOWNSTREAM CG33090 & 1 other INTERGENIC
2L	6890913	2L_6890913_SNP [dm3] 2L_6890913_SNP [dm6]	T	A	2.763e^-5	0.928	INTRON Nlg2
2R	17419550	2R_17419550_SNP [dm3] 2R_21532045_SNP [dm6]	T	A	2.875e^-5	0.928	INTRON Egfr EXON CR44725
3L	1035418	3L_1035418_SNP [dm3] 3L_1035418_SNP [dm6]	G	A	3.083e^-5	0.928	SYNONYMOUS_CODING CG9205 UPSTREAM trio DOWNSTREAM bab1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18038392	X_18038392_SNP [dm3] X_18144359_SNP [dm6]	A	C	3.109e^-5	0.928	INTERGENIC
2L	14346984	2L_14346984_SNP [dm3] 2L_14346984_SNP [dm6]	G	T	3.163e^-5	0.928	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
X	4609555	X_4609555_SNP [dm3] X_4715522_SNP [dm6]	C	T	3.173e^-5	0.928	INTRON Proc-R
2R	1919997	2R_1919997_SNP [dm3] 2R_6032492_SNP [dm6]	C	A	3.224e^-5	0.928	NON_SYNONYMOUS_CODING SCAP
X	13449365	X_13449365_SNP [dm3] X_13555332_SNP [dm6]	G	T	3.270e^-5	0.928	UTR_5_PRIME CG11816
3L	15643669	3L_15643669_SNP [dm3] 3L_15650569_SNP [dm6]	A	G	3.320e^-5	0.928	UPSTREAM Eig71Ea & 1 other DOWNSTREAM Eig71Ec & 1 other INTERGENIC
2L	10535826	2L_10535826_SNP [dm3] 2L_10535826_SNP [dm6]	C	T	3.331e^-5	0.928	SYNONYMOUS_CODING CG18302
X	3967535	X_3967535_SNP [dm3] X_4073502_SNP [dm6]	C	A	3.337e^-5	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2741145	2R_2741145_DEL [dm3] 2R_6853640_DEL [dm6]	CGC	C	3.425e^-5	0.928	INTERGENIC
2R	14895284	2R_14895284_SNP [dm3] 2R_19007779_SNP [dm6]	T	G	3.438e^-5	0.928	INTRON tn
2L	14232440	2L_14232440_SNP [dm3] 2L_14232440_SNP [dm6]	T	C	3.527e^-5	0.928	INTRON Dyrk2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26353068	3R_26353068_SNP [dm3] 3R_30527346_SNP [dm6]	T	A	3.580e^-5	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	7937829	2L_7937829_SNP [dm3] 2L_7937829_SNP [dm6]	C	A	3.659e^-5	0.928	INTRON Snoo
3L	21876795	3L_21876795_SNP [dm3] 3L_21883695_SNP [dm6]	G	T	3.692e^-5	0.928	DOWNSTREAM CR43878 INTRON mub
2R	3089077	2R_3089077_SNP [dm3] 2R_7201572_SNP [dm6]	C	A	3.699e^-5	0.928	INTRON pk
X	17315731	X_17315731_SNP [dm3] X_17421698_SNP [dm6]	C	T	3.726e^-5	0.928	NON_SYNONYMOUS_CODING CG8611 DOWNSTREAM CG12994	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8441041	2L_8441041_SNP [dm3] 2L_8441041_SNP [dm6]	T	A	3.798e^-5	0.928	SYNONYMOUS_CODING mus201
2R	15725074	2R_15725074_SNP [dm3] 2R_19837569_SNP [dm6]	A	G	3.882e^-5	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7274733	3R_7274733_SNP [dm3] 3R_11449011_SNP [dm6]	C	A	3.895e^-5	0.928	INTRON CG17230 & 1 other
2R	16245437	2R_16245437_SNP [dm3] 2R_20357932_SNP [dm6]	G	A	3.970e^-5	0.928	INTERGENIC
2R	17473635	2R_17473635_SNP [dm3] 2R_21586130_SNP [dm6]	G	A	4.085e^-5	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20708485	3R_20708485_SNP [dm3] 3R_24882763_SNP [dm6]	A	G	4.089e^-5	0.928	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4283726	X_4283726_SNP [dm3] X_4389693_SNP [dm6]	G	A	4.153e^-5	0.928	INTRON CR32773
2R	13931235	2R_13931235_SNP [dm3] 2R_18043730_SNP [dm6]	G	C	4.198e^-5	0.928	START_GAINED CG5773 UTR_5_PRIME CG5773 UPSTREAM CG5773 DOWNSTREAM CG5770
X	14704819	X_14704819_SNP [dm3] X_14810786_SNP [dm6]	C	T	4.257e^-5	0.928	INTRON rut
2L	18425707	2L_18425707_SNP [dm3] 2L_18425707_SNP [dm6]	T	G	4.316e^-5	0.928	INTERGENIC
3L	10759146	3L_10759146_SNP [dm3] 3L_10766046_SNP [dm6]	T	A	4.350e^-5	0.928	INTERGENIC
3R	15849272	3R_15849272_SNP [dm3] 3R_20023550_SNP [dm6]	G	A	4.374e^-5	0.928	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad
2R	17473629	2R_17473629_SNP [dm3] 2R_21586124_SNP [dm6]	C	G	4.374e^-5	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17473630	2R_17473630_SNP [dm3] 2R_21586125_SNP [dm6]	C	G	4.374e^-5	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4282991	X_4282991_SNP [dm3] X_4388958_SNP [dm6]	T	C	4.420e^-5	0.928	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4283300	X_4283300_SNP [dm3] X_4389267_SNP [dm6]	A	G	4.420e^-5	0.928	INTRON CR32773
3L	12804100	3L_12804100_SNP [dm3] 3L_12811000_SNP [dm6]	C	A	4.505e^-5	0.928	SYNONYMOUS_CODING Sap130 DOWNSTREAM CG32110	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1693269	2L_1693269_SNP [dm3] 2L_1693269_SNP [dm6]	T	A	4.507e^-5	0.928	INTRON chinmo
2L	1384489	2L_1384489_SNP [dm3] 2L_1384489_SNP [dm6]	G	T	4.558e^-5	0.928	INTRON lea
3L	10759151	3L_10759151_SNP [dm3] 3L_10766051_SNP [dm6]	A	C	4.628e^-5	0.928	INTERGENIC
2R	17473583	2R_17473583_SNP [dm3] 2R_21586078_SNP [dm6]	C	G	4.649e^-5	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14895282	2R_14895282_SNP [dm3] 2R_19007777_SNP [dm6]	G	C	4.755e^-5	0.928	INTRON tn
2L	16192863	2L_16192863_SNP [dm3] 2L_16192863_SNP [dm6]	T	A	4.802e^-5	0.928	INTERGENIC
2L	7223283	2L_7223283_SNP [dm3] 2L_7223283_SNP [dm6]	C	A	4.804e^-5	0.928	UPSTREAM ico DOWNSTREAM Ndae1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	22751210	3R_22751210_SNP [dm3] 3R_26925488_SNP [dm6]	G	A	4.811e^-5	0.928	INTRON sda
X	6194927	X_6194927_SNP [dm3] X_6300894_SNP [dm6]	G	A	4.826e^-5	0.928	SYNONYMOUS_CODING CG12219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10759161	3L_10759161_INS [dm3] 3L_10766061_INS [dm6]	A	AC	4.885e^-5	0.928	INTERGENIC
3L	10759167	3L_10759167_INS [dm3] 3L_10766067_INS [dm6]	G	GA	4.885e^-5	0.928	INTERGENIC
3L	15402265	3L_15402265_SNP [dm3] 3L_15409165_SNP [dm6]	T	A	4.970e^-5	0.928	DOWNSTREAM CG33259 INTERGENIC
3R	4239750	3R_4239750_SNP [dm3] 3R_8414028_SNP [dm6]	T	G	4.985e^-5	0.928	INTRON CG45263
2L	19263814	2L_19263814_DEL [dm3] 2L_19263814_DEL [dm6]	TTG	C	5.196e^-5	0.928	DOWNSTREAM CR44191 INTERGENIC
3L	10759158	3L_10759158_SNP [dm3] 3L_10766058_SNP [dm6]	A	C	5.275e^-5	0.928	INTERGENIC
3R	22751207	3R_22751207_SNP [dm3] 3R_26925485_SNP [dm6]	A	G	5.303e^-5	0.928	INTRON sda
X	4050143	X_4050143_INS [dm3] X_4156110_INS [dm6]	T	TTGGGT	5.384e^-5	0.928	INTRON Fas2
X	9644615	X_9644615_SNP [dm3] X_9750582_SNP [dm6]	G	A	5.386e^-5	0.928	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15646689	3L_15646689_SNP [dm3] 3L_15653589_SNP [dm6]	C	G	5.404e^-5	0.928	DOWNSTREAM Eig71Ed & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8378747	3R_8378747_SNP [dm3] 3R_12553025_SNP [dm6]	C	T	5.443e^-5	0.928	SYNONYMOUS_CODING Octbeta2R	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10759165	3L_10759165_SNP [dm3] 3L_10766065_SNP [dm6]	T	A	5.444e^-5	0.928	INTERGENIC
X	17538165	X_17538165_SNP [dm3] X_17644132_SNP [dm6]	A	G	5.506e^-5	0.928	SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
X	4283228	X_4283228_SNP [dm3] X_4389195_SNP [dm6]	G	A	5.522e^-5	0.928	INTRON CR32773
2L	6738192	2L_6738192_SNP [dm3] 2L_6738192_SNP [dm6]	C	A	5.525e^-5	0.928	INTRON TTLL3A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3060344	2R_3060344_SNP [dm3] 2R_7172839_SNP [dm6]	C	A	5.579e^-5	0.928	SYNONYMOUS_CODING pk INTRON pk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13508010	X_13508010_SNP [dm3] X_13613977_SNP [dm6]	C	A	5.582e^-5	0.928	UTR_3_PRIME tth DOWNSTREAM BthD
3L	9759816	3L_9759816_SNP [dm3] 3L_9766716_SNP [dm6]	T	C	5.603e^-5	0.928	INTRON CG8177
X	14317478	X_14317478_SNP [dm3] X_14423445_SNP [dm6]	A	G	5.639e^-5	0.928	INTRON dpr8
3L	10759117	3L_10759117_SNP [dm3] 3L_10766017_SNP [dm6]	G	C	5.714e^-5	0.928	INTERGENIC
2L	12551174	2L_12551174_INS [dm3] 2L_12551174_INS [dm6]	T	TGCAT	5.806e^-5	0.928	INTERGENIC
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	6.031e^-5	0.928	INTRON kek5
2R	18065484	2R_18065484_SNP [dm3] 2R_22177979_SNP [dm6]	T	A	6.057e^-5	0.928	NON_SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
3L	10759114	3L_10759114_SNP [dm3] 3L_10766014_SNP [dm6]	C	G	6.066e^-5	0.928	INTERGENIC
3L	6857571	3L_6857571_SNP [dm3] 3L_6864471_SNP [dm6]	C	T	6.068e^-5	0.928	DOWNSTREAM CR45115 INTERGENIC
2L	3404200	2L_3404200_SNP [dm3] 2L_3404200_SNP [dm6]	C	G	6.129e^-5	0.928	DOWNSTREAM pgant2 INTERGENIC
3L	11306002	3L_11306002_SNP [dm3] 3L_11312902_SNP [dm6]	T	C	6.152e^-5	0.928	SYNONYMOUS_CODING CG7573
X	17538186	X_17538186_SNP [dm3] X_17644153_SNP [dm6]	C	T	6.281e^-5	0.928	SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
3L	21865644	3L_21865644_SNP [dm3] 3L_21872544_SNP [dm6]	C	T	6.290e^-5	0.928	INTRON mub
2R	9134792	2R_9134792_SNP [dm3] 2R_13247287_SNP [dm6]	G	A	6.303e^-5	0.928	INTRON Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26834417	3R_26834417_SNP [dm3] 3R_31008695_SNP [dm6]	A	T	6.307e^-5	0.928	INTRON 5-HT7
3L	4813386	3L_4813386_SNP [dm3] 3L_4813386_SNP [dm6]	G	C	6.314e^-5	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17538168	X_17538168_SNP [dm3] X_17644135_SNP [dm6]	C	T	6.334e^-5	0.928	SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
3R	7146075	3R_7146075_SNP [dm3] 3R_11320353_SNP [dm6]	T	A	6.390e^-5	0.928	INTERGENIC
3L	17479970	3L_17479970_SNP [dm3] 3L_17486870_SNP [dm6]	A	T	6.417e^-5	0.928	UPSTREAM Oatp74D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16387750	2L_16387750_SNP [dm3] 2L_16387750_SNP [dm6]	T	G	6.419e^-5	0.928	INTERGENIC
2L	2018595	2L_2018595_SNP [dm3] 2L_2018595_SNP [dm6]	A	G	6.451e^-5	0.928	INTRON CG4238	TF binding site BDTNP1_TFBS_da
X	20643516	X_20643516_SNP [dm3] X_20772489_SNP [dm6]	T	G	6.455e^-5	0.928	UTR_3_PRIME shakB
3R	6362772	3R_6362772_SNP [dm3] 3R_10537050_SNP [dm6]	C	G	6.464e^-5	0.928	INTRON hth	TF binding site BDTNP1_TFBS_dl
X	4020508	X_4020508_SNP [dm3] X_4126475_SNP [dm6]	G	A	6.503e^-5	0.928	UTR_3_PRIME tyf DOWNSTREAM tyf
3L	12180191	3L_12180191_SNP [dm3] 3L_12187091_SNP [dm6]	A	G	6.540e^-5	0.928	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad
3R	22751212	3R_22751212_SNP [dm3] 3R_26925490_SNP [dm6]	T	G	6.553e^-5	0.928	INTRON sda
X	9000557	X_9000557_SNP [dm3] X_9106524_SNP [dm6]	G	A	6.642e^-5	0.928	UTR_5_PRIME Bx42 UPSTREAM Arfrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	4815929	3L_4815929_SNP [dm3] 3L_4815929_SNP [dm6]	G	T	6.644e^-5	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14476298	3L_14476298_SNP [dm3] 3L_14483198_SNP [dm6]	T	C	6.665e^-5	0.928	INTRON bbg
X	19282255	X_19282255_INS [dm3] X_19388222_INS [dm6]	A	ACAA	6.687e^-5	0.928	INTRON kek5
2L	16011782	2L_16011782_SNP [dm3] 2L_16011782_SNP [dm6]	G	A	6.712e^-5	0.928	INTRON beat-Ic
2R	18065297	2R_18065297_SNP [dm3] 2R_22177792_SNP [dm6]	A	G	6.809e^-5	0.928	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
2L	1382994	2L_1382994_SNP [dm3] 2L_1382994_SNP [dm6]	C	T	6.855e^-5	0.928	DOWNSTREAM CR44897 INTRON lea
2R	18066115	2R_18066115_INS [dm3] 2R_22178610_INS [dm6]	C	CGGCC	7.036e^-5	0.928	INTRON CG11170	TF binding site BDTNP1_TFBS_twi
2L	16191292	2L_16191292_SNP [dm3] 2L_16191292_SNP [dm6]	G	A	7.106e^-5	0.928	DOWNSTREAM Ca-alpha1D INTERGENIC
3L	10706236	3L_10706236_DEL [dm3] 3L_10713136_DEL [dm6]	AAA	GT	7.124e^-5	0.928	INTERGENIC
3R	15874505	3R_15874505_SNP [dm3] 3R_20048783_SNP [dm6]	C	T	7.162e^-5	0.928	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
3L	9752319	3L_9752319_SNP [dm3] 3L_9759219_SNP [dm6]	A	G	7.189e^-5	0.928	INTRON CG42268
3R	20206877	3R_20206877_SNP [dm3] 3R_24381155_SNP [dm6]	A	G	7.203e^-5	0.928	INTERGENIC
3R	15857077	3R_15857077_SNP [dm3] 3R_20031355_SNP [dm6]	G	A	7.211e^-5	0.928	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11367967	2L_11367967_SNP [dm3] 2L_11367967_SNP [dm6]	C	A	7.231e^-5	0.928	NON_SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4050135	X_4050135_SNP [dm3] X_4156102_SNP [dm6]	G	A	7.340e^-5	0.928	INTRON Fas2
2R	9701864	2R_9701864_SNP [dm3] 2R_13814359_SNP [dm6]	C	T	7.364e^-5	0.928	INTRON stj
3R	7274980	3R_7274980_SNP [dm3] 3R_11449258_SNP [dm6]	T	G	7.389e^-5	0.928	INTRON CG17230 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	15607481	3R_15607481_SNP [dm3] 3R_19781759_SNP [dm6]	C	A	7.419e^-5	0.928	SYNONYMOUS_CODING CG11407	TF binding site mE1_TFBS_sens
3L	7897057	3L_7897057_DEL [dm3] 3L_7903957_DEL [dm6]	TA	T	7.545e^-5	0.928	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	1014726	3L_1014726_SNP [dm3] 3L_1014726_SNP [dm6]	G	C	7.557e^-5	0.928	INTRON trio
2R	11291658	2R_11291658_SNP [dm3] 2R_15404153_SNP [dm6]	A	C	7.638e^-5	0.928	UPSTREAM CR45020 INTRON CG43729
3L	14512599	3L_14512599_SNP [dm3] 3L_14519499_SNP [dm6]	A	G	7.661e^-5	0.928	DOWNSTREAM CG4613 INTRON bbg
3L	8881989	3L_8881989_SNP [dm3] 3L_8888889_SNP [dm6]	G	A	7.671e^-5	0.928	UPSTREAM CG43169 INTRON dally
X	17538204	X_17538204_SNP [dm3] X_17644171_SNP [dm6]	C	T	7.860e^-5	0.928	SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
2R	18699185	2R_18699185_SNP [dm3] 2R_22811680_SNP [dm6]	G	C	7.892e^-5	0.928	INTRON stl
3R	26353092	3R_26353092_SNP [dm3] 3R_30527370_SNP [dm6]	A	T	7.925e^-5	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	7212790	2L_7212790_INS [dm3] 2L_7212790_INS [dm6]	A	ACATA	7.972e^-5	0.928	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8887104	3L_8887104_SNP [dm3] 3L_8894004_SNP [dm6]	C	T	8.024e^-5	0.928	SYNONYMOUS_CODING Mcm7 DOWNSTREAM TrpA1
3L	4660161	3L_4660161_SNP [dm3] 3L_4660161_SNP [dm6]	T	C	8.107e^-5	0.928	SYNONYMOUS_CODING axo
2L	16011707	2L_16011707_SNP [dm3] 2L_16011707_SNP [dm6]	T	G	8.142e^-5	0.928	INTRON beat-Ic
3L	3862669	3L_3862669_SNP [dm3] 3L_3862669_SNP [dm6]	G	C	8.164e^-5	0.928	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
3L	15405003	3L_15405003_SNP [dm3] 3L_15411903_SNP [dm6]	T	A	8.272e^-5	0.928	INTERGENIC
X	12843365	X_12843365_SNP [dm3] X_12949332_SNP [dm6]	T	C	8.346e^-5	0.928	UTR_3_PRIME fne
2R	2927079	2R_2927079_DEL [dm3] 2R_7039574_DEL [dm6]	AATTTAATCAGA...	A	8.424e^-5	0.928	UPSTREAM CG33914 & 1 other EXON CR12842	TF binding site mE1_TFBS_Trl
3R	20708497	3R_20708497_SNP [dm3] 3R_24882775_SNP [dm6]	A	G	8.462e^-5	0.928	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18504214	2L_18504214_SNP [dm3] 2L_18504214_SNP [dm6]	C	A	8.508e^-5	0.928	UPSTREAM kon INTERGENIC
2R	18259687	2R_18259687_SNP [dm3] 2R_22372182_SNP [dm6]	C	T	8.550e^-5	0.928	INTRON Liprin-gamma
3L	15647080	3L_15647080_SNP [dm3] 3L_15653980_SNP [dm6]	A	G	8.680e^-5	0.928	DOWNSTREAM Eig71Ed & 1 other INTERGENIC
3L	12846476	3L_12846476_SNP [dm3] 3L_12853376_SNP [dm6]	T	A	8.735e^-5	0.928	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
2R	4940486	2R_4940486_SNP [dm3] 2R_9052981_SNP [dm6]	C	A	8.894e^-5	0.928	INTRON CG13743	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	3316032	X_3316032_SNP [dm3] X_3421999_SNP [dm6]	C	T	8.962e^-5	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14617664	3L_14617664_SNP [dm3] 3L_14624564_SNP [dm6]	T	A	9.047e^-5	0.928	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1015286	2L_1015286_SNP [dm3] 2L_1015286_SNP [dm6]	G	A	9.217e^-5	0.928	INTRON IA-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18360098	X_18360098_SNP [dm3] X_18466065_SNP [dm6]	A	G	9.310e^-5	0.928	INTRON CG32547
2R	18065453	2R_18065453_SNP [dm3] 2R_22177948_SNP [dm6]	G	A	9.397e^-5	0.928	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
2R	20131666	2R_20131666_SNP [dm3] 2R_24244143_SNP [dm6]	A	T	9.413e^-5	0.928	INTRON nord
3L	21875728	3L_21875728_SNP [dm3] 3L_21882628_SNP [dm6]	G	A	9.414e^-5	0.928	INTRON mub
2L	13449050	2L_13449050_SNP [dm3] 2L_13449050_SNP [dm6]	T	C	9.437e^-5	0.928	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7938565	2L_7938565_SNP [dm3] 2L_7938565_SNP [dm6]	A	G	9.544e^-5	0.928	INTRON Snoo
3L	4816690	3L_4816690_DEL [dm3] 3L_4816690_DEL [dm6]	CC	C	9.550e^-5	0.928	INTRON Dhc64C
2L	15277889	2L_15277889_SNP [dm3] 2L_15277889_SNP [dm6]	C	T	9.660e^-5	0.928	INTRON CR43682
2L	16874241	2L_16874241_SNP [dm3] 2L_16874241_SNP [dm6]	T	A	9.770e^-5	0.928	INTRON CR31781
X	3316025	X_3316025_SNP [dm3] X_3421992_SNP [dm6]	T	A	9.945e^-5	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17999574	2R_17999574_SNP [dm3] 2R_22112069_SNP [dm6]	C	A	9.960e^-5	0.928	SYNONYMOUS_CODING Vrp1
3R	7812264	3R_7812264_SNP [dm3] 3R_11986542_SNP [dm6]	C	T	1.008e^-4	0.928	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad
3R	8358280	3R_8358280_SNP [dm3] 3R_12532558_SNP [dm6]	G	A	1.018e^-4	0.928	INTRON Octbeta3R
2R	3063495	2R_3063495_SNP [dm3] 2R_7175990_SNP [dm6]	C	A	1.027e^-4	0.928	UTR_5_PRIME CG11060 INTRON pk
2L	13457117	2L_13457117_SNP [dm3] 2L_13457117_SNP [dm6]	A	C	1.043e^-4	0.928	UPSTREAM CG42809 INTRON CG42784	TF binding site BDTNP1_TFBS_dl
3R	15854692	3R_15854692_SNP [dm3] 3R_20028970_SNP [dm6]	T	C	1.044e^-4	0.928	SYNONYMOUS_CODING CG4854 UPSTREAM CG4424 DOWNSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10019006	3L_10019006_SNP [dm3] 3L_10025906_SNP [dm6]	T	G	1.045e^-4	0.928	INTRON dpr6
3L	4815518	3L_4815518_SNP [dm3] 3L_4815518_SNP [dm6]	T	A	1.047e^-4	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2L	16132381	2L_16132381_SNP [dm3] 2L_16132381_SNP [dm6]	A	T	1.048e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10729254	3L_10729254_SNP [dm3] 3L_10736154_SNP [dm6]	T	A	1.052e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Trl
X	9000719	X_9000719_SNP [dm3] X_9106686_SNP [dm6]	G	A	1.058e^-4	0.928	UPSTREAM Arfrp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	4825224	3L_4825224_SNP [dm3] 3L_4825224_SNP [dm6]	G	T	1.063e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3862665	3L_3862665_SNP [dm3] 3L_3862665_SNP [dm6]	T	A	1.066e^-4	0.928	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
3L	15230572	3L_15230572_SNP [dm3] 3L_15237472_SNP [dm6]	A	C	1.073e^-4	0.928	NON_SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14705107	X_14705107_SNP [dm3] X_14811074_SNP [dm6]	G	C	1.074e^-4	0.928	INTRON rut
X	10207933	X_10207933_SNP [dm3] X_10313900_SNP [dm6]	T	C	1.077e^-4	0.928	INTRON alpha-Man-I
2L	6260851	2L_6260851_DEL [dm3] 2L_6260851_DEL [dm6]	CC	C	1.082e^-4	0.928	INTRON Ddr
3R	8358269	3R_8358269_SNP [dm3] 3R_12532547_SNP [dm6]	A	T	1.089e^-4	0.928	INTRON Octbeta3R
2R	4910226	2R_4910226_SNP [dm3] 2R_9022721_SNP [dm6]	G	T	1.095e^-4	0.928	SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12192988	3L_12192988_SNP [dm3] 3L_12199888_SNP [dm6]	G	A	1.106e^-4	0.928	DOWNSTREAM CG11529 & 1 other INTERGENIC
3L	6919536	3L_6919536_INS [dm3] 3L_6926436_INS [dm6]	A	ATATATG	1.118e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10019008	3L_10019008_SNP [dm3] 3L_10025908_SNP [dm6]	A	T	1.121e^-4	0.928	INTRON dpr6
3R	4798453	3R_4798453_SNP [dm3] 3R_8972731_SNP [dm6]	C	A	1.128e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15873465	3R_15873465_DEL [dm3] 3R_20047743_DEL [dm6]	TA	T	1.130e^-4	0.928	INTRON CG17193 & 2 others
3R	15874524	3R_15874524_SNP [dm3] 3R_20048802_SNP [dm6]	A	G	1.132e^-4	0.928	DOWNSTREAM Indy-2 & 1 other INTRON CG17193
3R	20708395	3R_20708395_SNP [dm3] 3R_24882673_SNP [dm6]	G	A	1.133e^-4	0.928	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3165912	2L_3165912_SNP [dm3] 2L_3165912_SNP [dm6]	A	T	1.148e^-4	0.928	INTRON Hydr2	TF binding site mE1_TFBS_HSA
X	4050015	X_4050015_SNP [dm3] X_4155982_SNP [dm6]	G	T	1.151e^-4	0.928	INTRON Fas2
2L	3872033	2L_3872033_SNP [dm3] 2L_3872033_SNP [dm6]	C	T	1.156e^-4	0.928	DOWNSTREAM Cep97 & 1 other INTRON CG31957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	18384314	X_18384314_DEL [dm3] X_18490281_DEL [dm6]	GGT	G	1.165e^-4	0.928	UPSTREAM CG15046 DOWNSTREAM CG15044 INTERGENIC
X	3316039	X_3316039_SNP [dm3] X_3422006_SNP [dm6]	G	C	1.175e^-4	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15822373	2R_15822373_SNP [dm3] 2R_19934868_SNP [dm6]	G	T	1.181e^-4	0.928	EXON CR44627
2L	4187250	2L_4187250_SNP [dm3] 2L_4187250_SNP [dm6]	G	A	1.181e^-4	0.928	SYNONYMOUS_CODING CG31961 UPSTREAM lectin-24Db	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_sens
3L	4825200	3L_4825200_SNP [dm3] 3L_4825200_SNP [dm6]	G	A	1.210e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	10531883	2L_10531883_SNP [dm3] 2L_10531883_SNP [dm6]	T	C	1.216e^-4	0.928	NON_SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
X	3316026	X_3316026_SNP [dm3] X_3421993_SNP [dm6]	T	G	1.216e^-4	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14225758	2L_14225758_SNP [dm3] 2L_14225758_SNP [dm6]	C	T	1.228e^-4	0.928	INTRON Dyrk2
3R	21949849	3R_21949849_SNP [dm3] 3R_26124127_SNP [dm6]	G	A	1.238e^-4	0.928	INTRON CG31324
3L	464743	3L_464743_SNP [dm3] 3L_464743_SNP [dm6]	G	T	1.246e^-4	0.928	INTRON klar
2R	19668041	2R_19668041_INS [dm3] 2R_23780518_INS [dm6]	C	CC	1.252e^-4	0.928	INTRON CG9850
3L	7210378	3L_7210378_SNP [dm3] 3L_7217278_SNP [dm6]	G	A	1.254e^-4	0.928	INTERGENIC
3R	22751312	3R_22751312_SNP [dm3] 3R_26925590_SNP [dm6]	A	G	1.261e^-4	0.928	INTRON sda
3L	3458167	3L_3458167_SNP [dm3] 3L_3458167_SNP [dm6]	G	A	1.265e^-4	0.928	SYNONYMOUS_CODING eIF5B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16191293	2L_16191293_SNP [dm3] 2L_16191293_SNP [dm6]	G	A	1.267e^-4	0.928	DOWNSTREAM Ca-alpha1D INTERGENIC
3R	4271422	3R_4271422_SNP [dm3] 3R_8445700_SNP [dm6]	C	T	1.275e^-4	0.928	INTRON CG45263
3L	14114368	3L_14114368_SNP [dm3] 3L_14121268_SNP [dm6]	C	G	1.293e^-4	0.928	INTRON Sox21b
2L	1382992	2L_1382992_SNP [dm3] 2L_1382992_SNP [dm6]	T	C	1.296e^-4	0.928	DOWNSTREAM CR44897 INTRON lea
3L	4815569	3L_4815569_SNP [dm3] 3L_4815569_SNP [dm6]	G	A	1.299e^-4	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3R	16686672	3R_16686672_SNP [dm3] 3R_20860950_SNP [dm6]	C	T	1.305e^-4	0.928	UTR_3_PRIME CG3822
3R	15606763	3R_15606763_SNP [dm3] 3R_19781041_SNP [dm6]	T	A	1.326e^-4	0.928	UPSTREAM CG11407 DOWNSTREAM CG11391 INTERGENIC
3R	17771437	3R_17771437_SNP [dm3] 3R_21945715_SNP [dm6]	G	C	1.329e^-4	0.928	INTERGENIC
2L	3093368	2L_3093368_SNP [dm3] 2L_3093368_SNP [dm6]	T	A	1.332e^-4	0.928	INTRON toc
3L	15648786	3L_15648786_SNP [dm3] 3L_15655686_SNP [dm6]	C	T	1.332e^-4	0.928	NON_SYNONYMOUS_CODING Eig71Ee DOWNSTREAM Eig71Ef
3R	15859011	3R_15859011_SNP [dm3] 3R_20033289_SNP [dm6]	A	G	1.339e^-4	0.928	DOWNSTREAM CG10889 INTRON CG4936
2R	17473573	2R_17473573_SNP [dm3] 2R_21586068_SNP [dm6]	G	A	1.350e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16128539	2L_16128539_SNP [dm3] 2L_16128539_SNP [dm6]	T	C	1.351e^-4	0.928	INTERGENIC
2L	11367964	2L_11367964_SNP [dm3] 2L_11367964_SNP [dm6]	T	A	1.361e^-4	0.928	NON_SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15858968	3R_15858968_SNP [dm3] 3R_20033246_SNP [dm6]	A	T	1.369e^-4	0.928	DOWNSTREAM CG10889 INTRON CG4936
3L	1411623	3L_1411623_SNP [dm3] 3L_1411623_SNP [dm6]	G	A	1.372e^-4	0.928	SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	8419500	3L_8419500_SNP [dm3] 3L_8426400_SNP [dm6]	T	G	1.373e^-4	0.928	SPLICE_SITE_REGION Cbl INTRON Cbl
2L	9923178	2L_9923178_SNP [dm3] 2L_9923178_SNP [dm6]	A	G	1.375e^-4	0.928	SYNONYMOUS_CODING TbCMF46 DOWNSTREAM CG4592	TF binding site mE1_TFBS_cad
X	3890695	X_3890695_SNP [dm3] X_3996662_SNP [dm6]	A	C	1.383e^-4	0.928	INTERGENIC
X	12809548	X_12809548_SNP [dm3] X_12915515_SNP [dm6]	C	T	1.389e^-4	0.928	EXON CR45626
3L	8419496	3L_8419496_SNP [dm3] 3L_8426396_SNP [dm6]	C	A	1.396e^-4	0.928	INTRON Cbl
3L	16336804	3L_16336804_SNP [dm3] 3L_16343704_SNP [dm6]	G	C	1.407e^-4	0.928	INTRON CG4998	TF binding site mE1_TFBS_cad
3L	16506211	3L_16506211_SNP [dm3] 3L_16513111_SNP [dm6]	T	C	1.416e^-4	0.928	SYNONYMOUS_CODING CG43373
2L	1831475	2L_1831475_SNP [dm3] 2L_1831475_SNP [dm6]	C	T	1.422e^-4	0.928	DOWNSTREAM c-cup & 1 other INTERGENIC
3R	15858905	3R_15858905_SNP [dm3] 3R_20033183_SNP [dm6]	T	C	1.429e^-4	0.928	DOWNSTREAM CG10889 INTRON CG4936
3L	14114374	3L_14114374_SNP [dm3] 3L_14121274_SNP [dm6]	A	C	1.442e^-4	0.928	INTRON Sox21b
2L	16128208	2L_16128208_SNP [dm3] 2L_16128208_SNP [dm6]	T	C	1.445e^-4	0.928	INTERGENIC
3R	20453331	3R_20453331_SNP [dm3] 3R_24627609_SNP [dm6]	C	A	1.452e^-4	0.928	NON_SYNONYMOUS_CODING Wsck INTRON atl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7274761	3R_7274761_SNP [dm3] 3R_11449039_SNP [dm6]	A	G	1.454e^-4	0.928	INTRON CG17230 & 1 other
3L	11408684	3L_11408684_SNP [dm3] 3L_11415584_SNP [dm6]	T	C	1.463e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15327072	2R_15327072_SNP [dm3] 2R_19439567_SNP [dm6]	A	T	1.467e^-4	0.928	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2404664	X_2404664_SNP [dm3] X_2510631_SNP [dm6]	A	G	1.473e^-4	0.928	INTRON trol
2R	6170280	2R_6170280_SNP [dm3] 2R_10282775_SNP [dm6]	T	C	1.474e^-4	0.928	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5379789	3L_5379789_SNP [dm3] 3L_5386689_SNP [dm6]	A	T	1.478e^-4	0.928	INTERGENIC
2L	4177223	2L_4177223_SNP [dm3] 2L_4177223_SNP [dm6]	T	A	1.479e^-4	0.928	INTERGENIC
3R	23293924	3R_23293924_SNP [dm3] 3R_27468202_SNP [dm6]	G	T	1.494e^-4	0.928	INTERGENIC
X	14347939	X_14347939_SNP [dm3] X_14453906_SNP [dm6]	G	A	1.503e^-4	0.928	INTRON dpr8
3L	8887058	3L_8887058_DEL [dm3] 3L_8893958_DEL [dm6]	TA	T	1.505e^-4	0.928	DOWNSTREAM TrpA1 INTRON Mcm7
3R	15858910	3R_15858910_SNP [dm3] 3R_20033188_SNP [dm6]	C	A	1.510e^-4	0.928	DOWNSTREAM CG10889 INTRON CG4936
2R	18060648	2R_18060648_SNP [dm3] 2R_22173143_SNP [dm6]	G	A	1.511e^-4	0.928	SYNONYMOUS_CODING CG3045 DOWNSTREAM a
2R	18061066	2R_18061066_SNP [dm3] 2R_22173561_SNP [dm6]	T	G	1.511e^-4	0.928	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2R	18061102	2R_18061102_SNP [dm3] 2R_22173597_SNP [dm6]	A	G	1.511e^-4	0.928	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
3R	15890714	3R_15890714_SNP [dm3] 3R_20064992_SNP [dm6]	G	A	1.512e^-4	0.928	INTERGENIC
3L	10540403	3L_10540403_SNP [dm3] 3L_10547303_SNP [dm6]	G	A	1.526e^-4	0.928	INTRON A2bp1
3R	20169559	3R_20169559_DEL [dm3] 3R_24343837_DEL [dm6]	GTTTATATAGTCAAT...	G	1.528e^-4	0.928	DOWNSTREAM CG5746 & 1 other INTERGENIC
3R	11514912	3R_11514912_SNP [dm3] 3R_15689190_SNP [dm6]	A	C	1.534e^-4	0.928	UTR_3_PRIME pxb DOWNSTREAM pxb
3L	10540433	3L_10540433_SNP [dm3] 3L_10547333_SNP [dm6]	G	A	1.537e^-4	0.928	INTRON A2bp1
2L	11368908	2L_11368908_SNP [dm3] 2L_11368908_SNP [dm6]	A	T	1.542e^-4	0.928	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
X	3316015	X_3316015_SNP [dm3] X_3421982_SNP [dm6]	G	T	1.544e^-4	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17473679	2R_17473679_SNP [dm3] 2R_21586174_SNP [dm6]	T	G	1.546e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4169558	X_4169558_SNP [dm3] X_4275525_SNP [dm6]	G	A	1.548e^-4	0.928	DOWNSTREAM CG15577 EXON CR45483
2R	9150385	2R_9150385_SNP [dm3] 2R_13262880_SNP [dm6]	T	A	1.548e^-4	0.928	INTRON CG42319
X	18929577	X_18929577_SNP [dm3] X_19035544_SNP [dm6]	C	T	1.553e^-4	0.928	INTERGENIC
2R	4727981	2R_4727981_INS [dm3] 2R_8840476_INS [dm6]	T	TTGT	1.554e^-4	0.928	INTRON sns
3R	14631431	3R_14631431_SNP [dm3] 3R_18805709_SNP [dm6]	G	C	1.557e^-4	0.928	UTR_3_PRIME CG18208
3R	1458507	3R_1458507_SNP [dm3] 3R_5632785_SNP [dm6]	A	G	1.561e^-4	0.928	SYNONYMOUS_CODING CG31549 UPSTREAM CG12171 DOWNSTREAM CG31551	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18487401	2L_18487401_SNP [dm3] 2L_18487401_SNP [dm6]	T	C	1.566e^-4	0.928	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3315975	X_3315975_SNP [dm3] X_3421942_SNP [dm6]	A	C	1.590e^-4	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17473688	2R_17473688_INS [dm3] 2R_21586183_INS [dm6]	T	AA	1.592e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6275186	2L_6275186_SNP [dm3] 2L_6275186_SNP [dm6]	A	G	1.603e^-4	0.928	INTRON Ddr
3R	8358509	3R_8358509_SNP [dm3] 3R_12532787_SNP [dm6]	C	T	1.613e^-4	0.928	INTRON Octbeta3R
2R	18060834	2R_18060834_SNP [dm3] 2R_22173329_SNP [dm6]	T	C	1.620e^-4	0.928	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2L	5439878	2L_5439878_SNP [dm3] 2L_5439878_SNP [dm6]	A	C	1.626e^-4	0.928	UPSTREAM CR31647 INTERGENIC
3R	22700328	3R_22700328_SNP [dm3] 3R_26874606_SNP [dm6]	G	A	1.637e^-4	0.928	SYNONYMOUS_CODING Rb97D	TF binding site mE1_TFBS_chinmo
X	18929579	X_18929579_SNP [dm3] X_19035546_SNP [dm6]	A	C	1.650e^-4	0.928	INTERGENIC
3L	17479945	3L_17479945_SNP [dm3] 3L_17486845_SNP [dm6]	C	T	1.650e^-4	0.928	UPSTREAM Oatp74D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10347043	3L_10347043_SNP [dm3] 3L_10353943_SNP [dm6]	A	T	1.655e^-4	0.928	INTRON CR44327
2L	7938254	2L_7938254_SNP [dm3] 2L_7938254_SNP [dm6]	G	A	1.658e^-4	0.928	INTRON Snoo
2L	6319781	2L_6319781_SNP [dm3] 2L_6319781_SNP [dm6]	A	G	1.660e^-4	0.928	INTRON Ddr
2L	15092814	2L_15092814_SNP [dm3] 2L_15092814_SNP [dm6]	T	A	1.666e^-4	0.928	INTRON CG15270
3L	652196	3L_652196_SNP [dm3] 3L_652196_SNP [dm6]	G	A	1.668e^-4	0.928	SYNONYMOUS_CODING CG3402 DOWNSTREAM Gale & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	13559631	2R_13559631_SNP [dm3] 2R_17672126_SNP [dm6]	G	A	1.674e^-4	0.928	SYNONYMOUS_CODING P32 DOWNSTREAM CR44404 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19387083	X_19387083_SNP [dm3] X_19493050_SNP [dm6]	G	A	1.676e^-4	0.928	DOWNSTREAM CG12204 INTRON CG12203	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	623245	X_623245_SNP [dm3] X_729212_SNP [dm6]	T	C	1.679e^-4	0.928	INTRON sdk
X	18038390	X_18038390_SNP [dm3] X_18144357_SNP [dm6]	C	A	1.683e^-4	0.928	INTERGENIC
2L	21928449	2L_21928449_SNP [dm3] 2L_21928449_SNP [dm6]	C	T	1.685e^-4	0.928	INTERGENIC	transposable element FlyBase
2R	17473550	2R_17473550_INS [dm3] 2R_21586045_INS [dm6]	T	TTTTTCTTATCCATAGCCTA...	1.704e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17473553	2R_17473553_SNP [dm3] 2R_21586048_SNP [dm6]	A	T	1.704e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1693808	2L_1693808_INS [dm3] 2L_1693808_INS [dm6]	G	GA	1.709e^-4	0.928	INTRON chinmo
X	5124374	X_5124374_SNP [dm3] X_5230341_SNP [dm6]	A	G	1.719e^-4	0.928	INTRON rg & 1 other
X	18038434	X_18038434_SNP [dm3] X_18144401_SNP [dm6]	C	T	1.720e^-4	0.928	INTERGENIC
2R	18024097	2R_18024097_SNP [dm3] 2R_22136592_SNP [dm6]	G	T	1.726e^-4	0.928	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9340690	3L_9340690_DEL [dm3] 3L_9347590_DEL [dm6]	TCAAAGTT	T	1.731e^-4	0.928	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	15858956	3R_15858956_SNP [dm3] 3R_20033234_SNP [dm6]	A	C	1.737e^-4	0.928	DOWNSTREAM CG10889 INTRON CG4936
2L	9314647	2L_9314647_SNP [dm3] 2L_9314647_SNP [dm6]	T	A	1.738e^-4	0.928	INTERGENIC
3L	7899363	3L_7899363_SNP [dm3] 3L_7906263_SNP [dm6]	T	A	1.743e^-4	0.928	INTRON pbl
3R	24358105	3R_24358105_SNP [dm3] 3R_28532383_SNP [dm6]	T	G	1.744e^-4	0.928	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3R	15864341	3R_15864341_DEL [dm3] 3R_20038619_DEL [dm6]	TC	T	1.748e^-4	0.928	UTR_3_PRIME CG17193
2L	5757951	2L_5757951_SNP [dm3] 2L_5757951_SNP [dm6]	A	G	1.750e^-4	0.928	INTRON CG11030
3L	14617096	3L_14617096_SNP [dm3] 3L_14623996_SNP [dm6]	T	C	1.752e^-4	0.928	INTRON CG9628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12160855	2L_12160855_SNP [dm3] 2L_12160855_SNP [dm6]	G	C	1.752e^-4	0.928	NON_SYNONYMOUS_CODING CG31760 UPSTREAM CG31861
3R	24223714	3R_24223714_SNP [dm3] 3R_28397992_SNP [dm6]	T	G	1.760e^-4	0.928	INTERGENIC
3L	10759052	3L_10759052_SNP [dm3] 3L_10765952_SNP [dm6]	C	A	1.764e^-4	0.928	INTERGENIC
3L	6364810	3L_6364810_SNP [dm3] 3L_6371710_SNP [dm6]	A	G	1.764e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18530254	3R_18530254_SNP [dm3] 3R_22704532_SNP [dm6]	A	C	1.772e^-4	0.928	DOWNSTREAM CG6972 INTRON CG13842
3R	2234192	3R_2234192_SNP [dm3] 3R_6408470_SNP [dm6]	A	C	1.772e^-4	0.928	DOWNSTREAM CR44017 INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17473690	2R_17473690_SNP [dm3] 2R_21586185_SNP [dm6]	G	A	1.784e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7937968	2L_7937968_SNP [dm3] 2L_7937968_SNP [dm6]	A	G	1.790e^-4	0.928	INTRON Snoo
2R	9446006	2R_9446006_SNP [dm3] 2R_13558501_SNP [dm6]	T	A	1.800e^-4	0.928	UPSTREAM CG13334 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	12474048	X_12474048_SNP [dm3] X_12580015_SNP [dm6]	C	A	1.810e^-4	0.928	INTRON CG11138	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	19894456	3R_19894456_SNP [dm3] 3R_24068734_SNP [dm6]	T	A	1.811e^-4	0.928	INTRON 4EHP
2R	18139986	2R_18139986_SNP [dm3] 2R_22252481_SNP [dm6]	T	C	1.822e^-4	0.928	INTRON dve
3L	12180214	3L_12180214_SNP [dm3] 3L_12187114_SNP [dm6]	A	G	1.833e^-4	0.928	SPLICE_SITE_REGION CG6910 INTRON CG6910	TF binding site mE1_TFBS_cad
3L	15645592	3L_15645592_SNP [dm3] 3L_15652492_SNP [dm6]	A	G	1.838e^-4	0.928	UPSTREAM Eig71Ed & 1 other INTERGENIC
2L	1976085	2L_1976085_SNP [dm3] 2L_1976085_SNP [dm6]	T	G	1.844e^-4	0.928	UTR_3_PRIME CG15356 DOWNSTREAM Der-1	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7938350	2L_7938350_SNP [dm3] 2L_7938350_SNP [dm6]	G	A	1.854e^-4	0.928	INTRON Snoo
2R	9134724	2R_9134724_SNP [dm3] 2R_13247219_SNP [dm6]	T	G	1.857e^-4	0.928	SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26353300	3R_26353300_SNP [dm3] 3R_30527578_SNP [dm6]	T	C	1.863e^-4	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	26353301	3R_26353301_SNP [dm3] 3R_30527579_SNP [dm6]	A	G	1.863e^-4	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2R	17473699	2R_17473699_SNP [dm3] 2R_21586194_SNP [dm6]	C	G	1.863e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17473700	2R_17473700_SNP [dm3] 2R_21586195_SNP [dm6]	T	C	1.863e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7820281	3L_7820281_SNP [dm3] 3L_7827181_SNP [dm6]	T	G	1.867e^-4	0.928	UTR_5_PRIME Pdp1 INTRON Pdp1
2L	6319798	2L_6319798_SNP [dm3] 2L_6319798_SNP [dm6]	G	T	1.879e^-4	0.928	INTRON Ddr
2R	18259797	2R_18259797_SNP [dm3] 2R_22372292_SNP [dm6]	A	G	1.880e^-4	0.928	INTRON Liprin-gamma
2L	14048533	2L_14048533_SNP [dm3] 2L_14048533_SNP [dm6]	C	A	1.882e^-4	0.928	SYNONYMOUS_CODING NimC4 INTRON nAChRalpha5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8922799	2R_8922799_SNP [dm3] 2R_13035294_SNP [dm6]	C	A	1.889e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20974270	2L_20974270_SNP [dm3] 2L_20974270_SNP [dm6]	G	A	1.890e^-4	0.928	INTRON CG42238
3L	14512968	3L_14512968_SNP [dm3] 3L_14519868_SNP [dm6]	A	G	1.894e^-4	0.928	SYNONYMOUS_CODING CG4613 INTRON bbg
X	4283251	X_4283251_SNP [dm3] X_4389218_SNP [dm6]	C	G	1.895e^-4	0.928	INTRON CR32773
2R	14461314	2R_14461314_SNP [dm3] 2R_18573809_SNP [dm6]	G	T	1.898e^-4	0.928	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1832194	2L_1832194_SNP [dm3] 2L_1832194_SNP [dm6]	G	A	1.900e^-4	0.928	SYNONYMOUS_CODING c-cup UPSTREAM mir-2280
3L	16884252	3L_16884252_SNP [dm3] 3L_16891152_SNP [dm6]	T	A	1.900e^-4	0.928	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15856567	3R_15856567_SNP [dm3] 3R_20030845_SNP [dm6]	C	G	1.902e^-4	0.928	NON_SYNONYMOUS_CODING trem UPSTREAM CG4936	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15092815	2L_15092815_SNP [dm3] 2L_15092815_SNP [dm6]	T	C	1.903e^-4	0.928	INTRON CG15270
3L	14114365	3L_14114365_INS [dm3] 3L_14121265_INS [dm6]	CT	TAAG	1.906e^-4	0.928	INTRON Sox21b
3R	8874993	3R_8874993_SNP [dm3] 3R_13049271_SNP [dm6]	A	G	1.909e^-4	0.928	UTR_3_PRIME CG31157 DOWNSTREAM CG7966
3L	12846452	3L_12846452_SNP [dm3] 3L_12853352_SNP [dm6]	A	G	1.910e^-4	0.928	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
2R	15716284	2R_15716284_SNP [dm3] 2R_19828779_SNP [dm6]	T	C	1.922e^-4	0.928	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16815814	2R_16815814_SNP [dm3] 2R_20928309_SNP [dm6]	C	T	1.924e^-4	0.928	INTRON Rx
2L	4601016	2L_4601016_SNP [dm3] 2L_4601016_SNP [dm6]	C	G	1.932e^-4	0.928	INTRON dp
X	13154203	X_13154203_SNP [dm3] X_13260170_SNP [dm6]	T	C	1.934e^-4	0.928	SYNONYMOUS_CODING comt	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10586925	2L_10586925_SNP [dm3] 2L_10586925_SNP [dm6]	C	T	1.955e^-4	0.928	INTRON Trim9	TF binding site mE1_TFBS_chinmo
3R	9731536	3R_9731536_SNP [dm3] 3R_13905814_SNP [dm6]	G	T	1.956e^-4	0.928	INTERGENIC
3R	18530272	3R_18530272_SNP [dm3] 3R_22704550_SNP [dm6]	T	C	1.970e^-4	0.928	SYNONYMOUS_CODING CG13842 DOWNSTREAM CG6972
2R	13564799	2R_13564799_SNP [dm3] 2R_17677294_SNP [dm6]	T	C	1.974e^-4	0.928	INTRON Sema-1b
2L	13458326	2L_13458326_SNP [dm3] 2L_13458326_SNP [dm6]	A	G	1.977e^-4	0.928	DOWNSTREAM CG42809 INTRON CG42784 EXON CR45684
2R	16235938	2R_16235938_SNP [dm3] 2R_20348433_SNP [dm6]	G	T	1.983e^-4	0.928	DOWNSTREAM CG16741 INTERGENIC
3L	14512951	3L_14512951_SNP [dm3] 3L_14519851_SNP [dm6]	G	A	1.986e^-4	0.928	UTR_3_PRIME CG4613 INTRON bbg
2L	3686462	2L_3686462_SNP [dm3] 2L_3686462_SNP [dm6]	A	G	1.989e^-4	0.928	INTRON CG34340
3L	8729977	3L_8729977_SNP [dm3] 3L_8736877_SNP [dm6]	G	A	1.992e^-4	0.928	UTR_3_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	20464257	X_20464257_INS [dm3] X_20593230_INS [dm6]	T	TTAGACAAAAATGGATTCT...	1.994e^-4	0.928	INTRON RunxA
2L	12525011	2L_12525011_INS [dm3] 2L_12525011_INS [dm6]	T	TTT	1.996e^-4	0.928	INTRON bun
2L	20856666	2L_20856666_SNP [dm3] 2L_20856666_SNP [dm6]	G	A	1.998e^-4	0.928	UTR_3_PRIME twit DOWNSTREAM CG14400
2L	6824506	2L_6824506_INS [dm3] 2L_6824506_INS [dm6]	A	AAAACCTTAAATATACCCCA...	2.007e^-4	0.928	INTRON sens-2
2R	19357985	2R_19357985_SNP [dm3] 2R_23470462_SNP [dm6]	C	T	2.019e^-4	0.928	SYNONYMOUS_CODING Or59b INTRON CG43795
X	18378478	X_18378478_SNP [dm3] X_18484445_SNP [dm6]	C	T	2.026e^-4	0.928	UPSTREAM Hayan DOWNSTREAM psh INTERGENIC
3R	15890792	3R_15890792_SNP [dm3] 3R_20065070_SNP [dm6]	T	G	2.045e^-4	0.928	INTERGENIC
3R	26353309	3R_26353309_SNP [dm3] 3R_30527587_SNP [dm6]	T	A	2.049e^-4	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	6377671	3R_6377671_SNP [dm3] 3R_10551949_SNP [dm6]	G	A	2.052e^-4	0.928	INTRON hth
2R	18088515	2R_18088515_SNP [dm3] 2R_22201010_SNP [dm6]	C	A	2.057e^-4	0.928	UPSTREAM CR45376 INTRON Swim	TF binding site mE1_TFBS_HSA
3L	9288741	3L_9288741_SNP [dm3] 3L_9295641_SNP [dm6]	A	G	2.059e^-4	0.928	INTERGENIC
X	17181250	X_17181250_SNP [dm3] X_17287217_SNP [dm6]	G	A	2.080e^-4	0.928	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_HSA
3L	18331812	3L_18331812_SNP [dm3] 3L_18338712_SNP [dm6]	A	G	2.082e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3R	15892266	3R_15892266_SNP [dm3] 3R_20066544_SNP [dm6]	G	A	2.087e^-4	0.928	INTERGENIC
2L	3409615	2L_3409615_SNP [dm3] 2L_3409615_SNP [dm6]	G	A	2.088e^-4	0.928	UPSTREAM CG8840 INTRON pgant2
3L	15230573	3L_15230573_SNP [dm3] 3L_15237473_SNP [dm6]	A	C	2.096e^-4	0.928	NON_SYNONYMOUS_CODING Tollo	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15858913	3R_15858913_SNP [dm3] 3R_20033191_SNP [dm6]	C	T	2.097e^-4	0.928	DOWNSTREAM CG10889 INTRON CG4936
3L	9823432	3L_9823432_SNP [dm3] 3L_9830332_SNP [dm6]	G	A	2.107e^-4	0.928	INTRON CG43897	TF binding site mE1_TFBS_chinmo
3R	27205994	3R_27205994_SNP [dm3] 3R_31380272_SNP [dm6]	G	C	2.118e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15857256	3R_15857256_SNP [dm3] 3R_20031534_SNP [dm6]	C	A	2.118e^-4	0.928	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13977089	2R_13977089_SNP [dm3] 2R_18089584_SNP [dm6]	A	T	2.120e^-4	0.928	INTRON CG34386
3L	8419456	3L_8419456_SNP [dm3] 3L_8426356_SNP [dm6]	G	A	2.124e^-4	0.928	INTRON Cbl
X	4873145	X_4873145_INS [dm3] X_4979112_INS [dm6]	G	GCGCGCCCAAATTG...	2.125e^-4	0.928	INTRON CR44833
3L	12451802	3L_12451802_SNP [dm3] 3L_12458702_SNP [dm6]	T	G	2.125e^-4	0.928	INTERGENIC
2R	13794239	2R_13794239_SNP [dm3] 2R_17906734_SNP [dm6]	A	C	2.126e^-4	0.928	INTRON Elk
2R	19006154	2R_19006154_SNP [dm3] 2R_23118631_SNP [dm6]	G	A	2.128e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA
X	21921395	X_21921395_SNP [dm3] X_22519559_SNP [dm6]	A	C	2.131e^-4	0.928	INTRON CG17600
2L	6213834	2L_6213834_SNP [dm3] 2L_6213834_SNP [dm6]	C	A	2.134e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	6267594	3R_6267594_SNP [dm3] 3R_10441872_SNP [dm6]	C	T	2.135e^-4	0.928	INTERGENIC
3L	12599822	3L_12599822_SNP [dm3] 3L_12606722_SNP [dm6]	A	G	2.138e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15946559	3R_15946559_SNP [dm3] 3R_20120837_SNP [dm6]	G	A	2.142e^-4	0.928	UPSTREAM Gr92a INTERGENIC
3L	16979312	3L_16979312_SNP [dm3] 3L_16986212_SNP [dm6]	C	T	2.145e^-4	0.928	UPSTREAM Exn INTRON Exn	TF binding site mE1_TFBS_bab1 mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	4239806	3R_4239806_SNP [dm3] 3R_8414084_SNP [dm6]	C	G	2.147e^-4	0.928	INTRON CG45263
3L	9340870	3L_9340870_SNP [dm3] 3L_9347770_SNP [dm6]	T	C	2.151e^-4	0.928	SYNONYMOUS_CODING PGRP-LC UTR_3_PRIME PGRP-LC DOWNSTREAM PGRP-LC
2L	6580112	2L_6580112_SNP [dm3] 2L_6580112_SNP [dm6]	A	G	2.156e^-4	0.928	INTRON CG11319
3L	9146309	3L_9146309_SNP [dm3] 3L_9153209_SNP [dm6]	A	T	2.159e^-4	0.928	INTRON Rdl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9567892	3L_9567892_DEL [dm3] 3L_9574792_DEL [dm6]	TAA	T	2.161e^-4	0.928	INTRON CG42673
3L	10137132	3L_10137132_SNP [dm3] 3L_10144032_SNP [dm6]	C	T	2.163e^-4	0.928	INTERGENIC
4	291960	4_291960_SNP [dm3] 4_271334_SNP [dm6]	G	T	2.167e^-4	0.928	NON_SYNONYMOUS_CODING NfI	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15695943	3L_15695943_SNP [dm3] 3L_15702843_SNP [dm6]	C	T	2.172e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15838545	3R_15838545_SNP [dm3] 3R_20012823_SNP [dm6]	C	T	2.186e^-4	0.928	INTRON CG17190
2R	20365101	2R_20365101_SNP [dm3] 2R_24477578_SNP [dm6]	G	A	2.186e^-4	0.928	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3L	2401503	3L_2401503_SNP [dm3] 3L_2401503_SNP [dm6]	G	T	2.194e^-4	0.928	INTRON CG45186
2L	10586614	2L_10586614_SNP [dm3] 2L_10586614_SNP [dm6]	G	A	2.208e^-4	0.928	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15946532	3R_15946532_INS [dm3] 3R_20120810_INS [dm6]	C	CTAC	2.210e^-4	0.928	UPSTREAM Gr92a INTERGENIC
3R	9743756	3R_9743756_SNP [dm3] 3R_13918034_SNP [dm6]	G	A	2.216e^-4	0.928	INTERGENIC
3R	15884449	3R_15884449_SNP [dm3] 3R_20058727_SNP [dm6]	C	A	2.227e^-4	0.928	SYNONYMOUS_CODING mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
2R	10541111	2R_10541111_SNP [dm3] 2R_14653606_SNP [dm6]	A	G	2.232e^-4	0.928	INTERGENIC
2L	22033489	2L_22033489_DEL [dm3] 2L_22033489_DEL [dm6]	ATCTACAATTTACTC...	A	2.233e^-4	0.928	EXON CR45335	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_h mE1_TFBS_HSA
2L	740325	2L_740325_DEL [dm3] 2L_740325_DEL [dm6]	TAC	G	2.240e^-4	0.928	INTRON Eaat2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3L	16769498	3L_16769498_SNP [dm3] 3L_16776398_SNP [dm6]	A	C	2.266e^-4	0.928	UTR_3_PRIME Nrt DOWNSTREAM CG13025	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	4825206	3L_4825206_SNP [dm3] 3L_4825206_SNP [dm6]	A	C	2.269e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18002692	2R_18002692_MNP [dm3] 2R_22115187_MNP [dm6]	CAG	ACA	2.270e^-4	0.928	NON_SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2L	17709061	2L_17709061_SNP [dm3] 2L_17709061_SNP [dm6]	T	C	2.273e^-4	0.928	INTRON CadN
X	13885654	X_13885654_SNP [dm3] X_13991621_SNP [dm6]	G	T	2.275e^-4	0.928	DOWNSTREAM CR44655 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18783286	3R_18783286_SNP [dm3] 3R_22957564_SNP [dm6]	C	A	2.277e^-4	0.928	INTRON klg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9653593	3R_9653593_SNP [dm3] 3R_13827871_SNP [dm6]	T	G	2.284e^-4	0.928	UTR_5_PRIME Mst87F UPSTREAM CR43300 & 1 other	regulatory region REDfly_CRMs
2R	7962349	2R_7962349_SNP [dm3] 2R_12074844_SNP [dm6]	G	A	2.286e^-4	0.928	INTRON CG8888
2R	17123642	2R_17123642_SNP [dm3] 2R_21236137_SNP [dm6]	G	A	2.287e^-4	0.928	INTRON ASPP
2R	16235937	2R_16235937_SNP [dm3] 2R_20348432_SNP [dm6]	A	T	2.287e^-4	0.928	DOWNSTREAM CG16741 INTERGENIC
2R	16235942	2R_16235942_INS [dm3] 2R_20348437_INS [dm6]	T	TCTACT	2.287e^-4	0.928	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16235944	2R_16235944_SNP [dm3] 2R_20348439_SNP [dm6]	A	T	2.287e^-4	0.928	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14114378	3L_14114378_SNP [dm3] 3L_14121278_SNP [dm6]	A	T	2.296e^-4	0.928	INTRON Sox21b
X	1148750	X_1148750_SNP [dm3] X_1254717_SNP [dm6]	A	G	2.302e^-4	0.928	INTRON Atf3
X	3867047	X_3867047_SNP [dm3] X_3973014_SNP [dm6]	C	T	2.309e^-4	0.928	DOWNSTREAM CR45481 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9847456	2L_9847456_SNP [dm3] 2L_9847456_SNP [dm6]	A	G	2.312e^-4	0.928	UPSTREAM CR43766 INTRON nAChRalpha6
3R	4239797	3R_4239797_SNP [dm3] 3R_8414075_SNP [dm6]	T	A	2.315e^-4	0.928	INTRON CG45263
2L	6275036	2L_6275036_SNP [dm3] 2L_6275036_SNP [dm6]	A	T	2.316e^-4	0.928	INTRON Ddr
2R	2741059	2R_2741059_SNP [dm3] 2R_6853554_SNP [dm6]	G	A	2.317e^-4	0.928	INTERGENIC
X	9841373	X_9841373_SNP [dm3] X_9947340_SNP [dm6]	G	A	2.324e^-4	0.928	INTERGENIC
3R	15669843	3R_15669843_SNP [dm3] 3R_19844121_SNP [dm6]	C	A	2.326e^-4	0.928	INTERGENIC
3R	14955036	3R_14955036_SNP [dm3] 3R_19129314_SNP [dm6]	G	A	2.329e^-4	0.928	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2L	6600648	2L_6600648_SNP [dm3] 2L_6600648_SNP [dm6]	T	C	2.331e^-4	0.928	UTR_5_PRIME CG11319
3L	16406293	3L_16406293_SNP [dm3] 3L_16413193_SNP [dm6]	A	G	2.342e^-4	0.928	INTRON TMS1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12478207	2L_12478207_SNP [dm3] 2L_12478207_SNP [dm6]	A	C	2.348e^-4	0.928	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15362398	X_15362398_INS [dm3] X_15468365_INS [dm6]	G	GGTAATGGTAATG...	2.352e^-4	0.928	UTR_3_PRIME Grip128 UPSTREAM CG15642 DOWNSTREAM CG15641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17090505	3L_17090505_SNP [dm3] 3L_17097405_SNP [dm6]	T	C	2.360e^-4	0.928	INTRON Rbp6
X	17317192	X_17317192_SNP [dm3] X_17423159_SNP [dm6]	A	T	2.361e^-4	0.928	UTR_5_PRIME CG12994 UPSTREAM CG5613	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9146305	3L_9146305_SNP [dm3] 3L_9153205_SNP [dm6]	G	T	2.365e^-4	0.928	INTRON Rdl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4801114	3L_4801114_SNP [dm3] 3L_4801114_SNP [dm6]	A	G	2.370e^-4	0.928	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
2R	16249494	2R_16249494_SNP [dm3] 2R_20361989_SNP [dm6]	T	G	2.371e^-4	0.928	INTERGENIC
3L	4825307	3L_4825307_SNP [dm3] 3L_4825307_SNP [dm6]	G	A	2.376e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15857943	3R_15857943_SNP [dm3] 3R_20032221_SNP [dm6]	G	T	2.380e^-4	0.928	SYNONYMOUS_CODING CG4936 UPSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	14114373	3L_14114373_SNP [dm3] 3L_14121273_SNP [dm6]	A	T	2.392e^-4	0.928	INTRON Sox21b
2R	3764797	2R_3764797_SNP [dm3] 2R_7877292_SNP [dm6]	T	A	2.407e^-4	0.928	INTRON Dgk
3R	15589014	3R_15589014_SNP [dm3] 3R_19763292_SNP [dm6]	A	G	2.414e^-4	0.928	INTRON GluClalpha
2R	9701842	2R_9701842_SNP [dm3] 2R_13814337_SNP [dm6]	T	G	2.417e^-4	0.928	INTRON stj
2L	3871337	2L_3871337_SNP [dm3] 2L_3871337_SNP [dm6]	A	T	2.421e^-4	0.928	UTR_3_PRIME Cep97 & 1 other DOWNSTREAM CG31957	TF binding site mE1_TFBS_sens
2L	5652538	2L_5652538_SNP [dm3] 2L_5652538_SNP [dm6]	A	C	2.421e^-4	0.928	INTRON CG31646
X	15362371	X_15362371_SNP [dm3] X_15468338_SNP [dm6]	A	T	2.422e^-4	0.928	UTR_3_PRIME Grip128 UPSTREAM CG15642 DOWNSTREAM CG15641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10297821	2L_10297821_SNP [dm3] 2L_10297821_SNP [dm6]	C	T	2.432e^-4	0.928	SYNONYMOUS_CODING CYLD EXON CR44968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	15823757	2R_15823757_SNP [dm3] 2R_19936252_SNP [dm6]	G	A	2.432e^-4	0.928	INTERGENIC
3R	26353195	3R_26353195_SNP [dm3] 3R_30527473_SNP [dm6]	A	T	2.435e^-4	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
X	16814635	X_16814635_SNP [dm3] X_16920602_SNP [dm6]	C	T	2.438e^-4	0.928	INTRON CG4928
2L	8023756	2L_8023756_SNP [dm3] 2L_8023756_SNP [dm6]	C	T	2.439e^-4	0.928	INTRON Tg	regulatory region REDfly_CRMs
2R	12796693	2R_12796693_SNP [dm3] 2R_16909188_SNP [dm6]	T	C	2.459e^-4	0.928	INTERGENIC
4	1237803	4_1237803_SNP [dm3] 4_1234077_SNP [dm6]	T	C	2.464e^-4	0.928	INTRON Caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4825295	3L_4825295_SNP [dm3] 3L_4825295_SNP [dm6]	G	C	2.464e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17123647	2R_17123647_SNP [dm3] 2R_21236142_SNP [dm6]	T	A	2.464e^-4	0.928	INTRON ASPP
X	8195497	X_8195497_SNP [dm3] X_8301464_SNP [dm6]	C	T	2.481e^-4	0.928	INTRON nAChRalpha3
2R	9272119	2R_9272119_SNP [dm3] 2R_13384614_SNP [dm6]	C	T	2.486e^-4	0.928	INTERGENIC
3R	26353159	3R_26353159_SNP [dm3] 3R_30527437_SNP [dm6]	A	G	2.490e^-4	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	3790326	2L_3790326_DEL [dm3] 2L_3790326_DEL [dm6]	CT	C	2.490e^-4	0.928	INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16348947	2R_16348947_SNP [dm3] 2R_20461442_SNP [dm6]	A	T	2.493e^-4	0.928	INTRON CG12484
2L	18046428	2L_18046428_SNP [dm3] 2L_18046428_SNP [dm6]	C	T	2.497e^-4	0.928	INTRON rdo
2R	18055951	2R_18055951_SNP [dm3] 2R_22168446_SNP [dm6]	T	C	2.511e^-4	0.928	INTRON a
3L	877026	3L_877026_SNP [dm3] 3L_877026_SNP [dm6]	C	A	2.516e^-4	0.928	DOWNSTREAM CG13907 INTRON CG32479	TF binding site mE1_TFBS_sens
2R	10537039	2R_10537039_SNP [dm3] 2R_14649534_SNP [dm6]	C	T	2.518e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3111339	2L_3111339_SNP [dm3] 2L_3111339_SNP [dm6]	A	G	2.519e^-4	0.928	DOWNSTREAM PpD6 INTRON toc
2L	19263829	2L_19263829_SNP [dm3] 2L_19263829_SNP [dm6]	G	A	2.522e^-4	0.928	DOWNSTREAM CR44191 INTERGENIC
3L	2370943	3L_2370943_SNP [dm3] 3L_2370943_SNP [dm6]	G	A	2.525e^-4	0.928	SYNONYMOUS_CODING CG1317	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16249495	2R_16249495_SNP [dm3] 2R_20361990_SNP [dm6]	T	C	2.543e^-4	0.928	INTERGENIC
X	18531773	X_18531773_SNP [dm3] X_18637740_SNP [dm6]	A	G	2.546e^-4	0.928	SYNONYMOUS_CODING Rip11	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19505480	X_19505480_SNP [dm3] X_19611447_SNP [dm6]	T	A	2.553e^-4	0.928	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC
2L	7355139	2L_7355139_SNP [dm3] 2L_7355139_SNP [dm6]	A	G	2.560e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11280699	2R_11280699_SNP [dm3] 2R_15393194_SNP [dm6]	C	T	2.562e^-4	0.928	INTERGENIC
3R	16822484	3R_16822484_SNP [dm3] 3R_20996762_SNP [dm6]	C	T	2.563e^-4	0.928	INTRON Calx
2L	13725060	2L_13725060_DEL [dm3] 2L_13725060_DEL [dm6]	CTAG	T	2.568e^-4	0.928	INTERGENIC
X	16928146	X_16928146_DEL [dm3] X_17034113_DEL [dm6]	AATAA	T	2.571e^-4	0.928	INTRON CG45002
3L	9568642	3L_9568642_SNP [dm3] 3L_9575542_SNP [dm6]	T	A	2.572e^-4	0.928	INTRON CG42673
2L	8861578	2L_8861578_SNP [dm3] 2L_8861578_SNP [dm6]	T	G	2.579e^-4	0.928	INTERGENIC
3R	5478888	3R_5478888_SNP [dm3] 3R_9653166_SNP [dm6]	G	T	2.588e^-4	0.928	UTR_5_PRIME CG43441 INTRON CG9492
3L	9823437	3L_9823437_SNP [dm3] 3L_9830337_SNP [dm6]	T	G	2.590e^-4	0.928	INTRON CG43897	TF binding site mE1_TFBS_chinmo
X	3316063	X_3316063_SNP [dm3] X_3422030_SNP [dm6]	C	T	2.614e^-4	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16665731	3L_16665731_SNP [dm3] 3L_16672631_SNP [dm6]	A	G	2.615e^-4	0.928	INTRON zetaCOP
2R	12796695	2R_12796695_SNP [dm3] 2R_16909190_SNP [dm6]	G	A	2.617e^-4	0.928	INTERGENIC
2L	7355134	2L_7355134_INS [dm3] 2L_7355134_INS [dm6]	A	TATG	2.625e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	3316023	X_3316023_INS [dm3] X_3421990_INS [dm6]	C	CCAG	2.628e^-4	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19936484	3L_19936484_DEL [dm3] 3L_19943384_DEL [dm6]	AGCTGAAA	A	2.631e^-4	0.928	INTRON Ac76E
3L	8353191	3L_8353191_SNP [dm3] 3L_8360091_SNP [dm6]	A	T	2.632e^-4	0.928	INTRON Idh	TF binding site mE1_TFBS_Trl
3R	8868160	3R_8868160_SNP [dm3] 3R_13042438_SNP [dm6]	T	C	2.636e^-4	0.928	NON_SYNONYMOUS_CODING CG11670 UPSTREAM snk INTRON snk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15647762	3L_15647762_SNP [dm3] 3L_15654662_SNP [dm6]	C	A	2.640e^-4	0.928	SYNONYMOUS_CODING Eig71Ee
3L	4169760	3L_4169760_SNP [dm3] 3L_4169760_SNP [dm6]	T	C	2.649e^-4	0.928	UPSTREAM CR44529 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	7812258	3R_7812258_SNP [dm3] 3R_11986536_SNP [dm6]	G	A	2.650e^-4	0.928	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad
3L	11249676	3L_11249676_DEL [dm3] 3L_11256576_DEL [dm6]	TTTATTATTT	T	2.651e^-4	0.928	DOWNSTREAM scyl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9566611	3L_9566611_SNP [dm3] 3L_9573511_SNP [dm6]	A	C	2.652e^-4	0.928	INTRON CG42673
2L	16011812	2L_16011812_SNP [dm3] 2L_16011812_SNP [dm6]	G	A	2.656e^-4	0.928	INTRON beat-Ic
4	1122347	4_1122347_SNP [dm3] 4_1101721_SNP [dm6]	A	T	2.658e^-4	0.928	INTRON sv
2L	6231271	2L_6231271_SNP [dm3] 2L_6231271_SNP [dm6]	C	T	2.659e^-4	0.928	UPSTREAM CR44823 INTERGENIC
2L	20948873	2L_20948873_DEL [dm3] 2L_20948873_DEL [dm6]	GG	G	2.664e^-4	0.928	UPSTREAM CR44606 INTERGENIC
2L	5518474	2L_5518474_SNP [dm3] 2L_5518474_SNP [dm6]	A	C	2.664e^-4	0.928	NON_SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4814679	3L_4814679_SNP [dm3] 3L_4814679_SNP [dm6]	T	C	2.665e^-4	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	316787	3L_316787_SNP [dm3] 3L_316787_SNP [dm6]	C	A	2.674e^-4	0.928	UPSTREAM CG34264 INTRON fwd
2L	3499434	2L_3499434_SNP [dm3] 2L_3499434_SNP [dm6]	C	T	2.693e^-4	0.928	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15092812	2L_15092812_SNP [dm3] 2L_15092812_SNP [dm6]	A	T	2.693e^-4	0.928	INTRON CG15270
3L	10118257	3L_10118257_SNP [dm3] 3L_10125157_SNP [dm6]	T	A	2.694e^-4	0.928	INTRON dpr6
X	3984882	X_3984882_SNP [dm3] X_4090849_SNP [dm6]	T	G	2.698e^-4	0.928	UTR_3_PRIME CG43689 DOWNSTREAM CG43689	TF binding site mE1_TFBS_cad
2R	9559888	2R_9559888_SNP [dm3] 2R_13672383_SNP [dm6]	T	C	2.699e^-4	0.928	UPSTREAM CR45031 DOWNSTREAM CG18368 INTRON fas
3R	17831044	3R_17831044_SNP [dm3] 3R_22005322_SNP [dm6]	C	T	2.701e^-4	0.928	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2210524	3L_2210524_SNP [dm3] 3L_2210524_SNP [dm6]	G	A	2.704e^-4	0.928	DOWNSTREAM CG15878 INTERGENIC
3L	4825203	3L_4825203_SNP [dm3] 3L_4825203_SNP [dm6]	C	A	2.708e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18470529	3R_18470529_SNP [dm3] 3R_22644807_SNP [dm6]	T	G	2.710e^-4	0.928	INTRON CG45058
2L	15246440	2L_15246440_DEL [dm3] 2L_15246440_DEL [dm6]	TTTAGTTTT	T	2.718e^-4	0.928	UPSTREAM ZnT35C INTRON ZnT35C
2R	19003564	2R_19003564_SNP [dm3] 2R_23116041_SNP [dm6]	A	T	2.729e^-4	0.928	INTERGENIC
3R	15790518	3R_15790518_SNP [dm3] 3R_19964796_SNP [dm6]	C	T	2.730e^-4	0.928	INTRON Hs6st
3R	19599596	3R_19599596_SNP [dm3] 3R_23773874_SNP [dm6]	C	T	2.734e^-4	0.928	DOWNSTREAM Nup98-96 INTRON CG10208	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	4175695	2L_4175695_SNP [dm3] 2L_4175695_SNP [dm6]	G	A	2.742e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16917558	2R_16917558_SNP [dm3] 2R_21030053_SNP [dm6]	C	T	2.745e^-4	0.928	UPSTREAM CR45148 INTERGENIC
2L	4177023	2L_4177023_SNP [dm3] 2L_4177023_SNP [dm6]	A	G	2.747e^-4	0.928	INTERGENIC
X	20017127	X_20017127_SNP [dm3] X_20123094_SNP [dm6]	T	C	2.752e^-4	0.928	DOWNSTREAM CG34331 INTRON CG34331
3L	8350160	3L_8350160_SNP [dm3] 3L_8357060_SNP [dm6]	G	T	2.756e^-4	0.928	SYNONYMOUS_CODING Idh UPSTREAM CG17352	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	16406652	2L_16406652_SNP [dm3] 2L_16406652_SNP [dm6]	T	A	2.762e^-4	0.928	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15856368	2L_15856368_SNP [dm3] 2L_15856368_SNP [dm6]	G	C	2.763e^-4	0.928	UTR_3_PRIME Tektin-A
2L	2022644	2L_2022644_SNP [dm3] 2L_2022644_SNP [dm6]	T	C	2.774e^-4	0.928	INTRON CG4238
3L	3862680	3L_3862680_SNP [dm3] 3L_3862680_SNP [dm6]	T	A	2.778e^-4	0.928	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc
3L	4825189	3L_4825189_SNP [dm3] 3L_4825189_SNP [dm6]	A	G	2.779e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	13885663	X_13885663_SNP [dm3] X_13991630_SNP [dm6]	C	T	2.803e^-4	0.928	DOWNSTREAM CR44655 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16360916	2L_16360916_SNP [dm3] 2L_16360916_SNP [dm6]	C	T	2.805e^-4	0.928	INTERGENIC
3R	13127297	3R_13127297_SNP [dm3] 3R_17301575_SNP [dm6]	A	T	2.817e^-4	0.928	INTERGENIC
X	6091182	X_6091182_SNP [dm3] X_6197149_SNP [dm6]	A	G	2.817e^-4	0.928	SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
3L	15645665	3L_15645665_SNP [dm3] 3L_15652565_SNP [dm6]	C	A	2.818e^-4	0.928	UTR_5_PRIME Eig71Ed UPSTREAM Eig71Ec
3L	9340688	3L_9340688_SNP [dm3] 3L_9347588_SNP [dm6]	G	T	2.819e^-4	0.928	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	12162331	3L_12162331_SNP [dm3] 3L_12169231_SNP [dm6]	G	A	2.847e^-4	0.928	INTRON Rh7
2R	16453222	2R_16453222_SNP [dm3] 2R_20565717_SNP [dm6]	T	A	2.847e^-4	0.928	INTRON qsm
2L	6320002	2L_6320002_SNP [dm3] 2L_6320002_SNP [dm6]	C	T	2.848e^-4	0.928	INTRON Ddr
2R	9134771	2R_9134771_SNP [dm3] 2R_13247266_SNP [dm6]	C	A	2.862e^-4	0.928	INTRON Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17567347	2L_17567347_SNP [dm3] 2L_17567347_SNP [dm6]	A	T	2.867e^-4	0.928	DOWNSTREAM mir-124 INTERGENIC
2R	13564800	2R_13564800_SNP [dm3] 2R_17677295_SNP [dm6]	T	C	2.870e^-4	0.928	INTRON Sema-1b
X	19385968	X_19385968_SNP [dm3] X_19491935_SNP [dm6]	G	A	2.878e^-4	0.928	UTR_5_PRIME pcm UPSTREAM CG12203	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	7867702	3R_7867702_SNP [dm3] 3R_12041980_SNP [dm6]	A	C	2.878e^-4	0.928	NON_SYNONYMOUS_CODING CG14736 INTRON CG14736
X	9644661	X_9644661_SNP [dm3] X_9750628_SNP [dm6]	G	A	2.889e^-4	0.928	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15396071	3R_15396071_SNP [dm3] 3R_19570349_SNP [dm6]	T	A	2.889e^-4	0.928	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6255947	2L_6255947_SNP [dm3] 2L_6255947_SNP [dm6]	C	T	2.892e^-4	0.928	SYNONYMOUS_CODING CG9486 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5124352	X_5124352_SNP [dm3] X_5230319_SNP [dm6]	C	T	2.910e^-4	0.928	INTRON rg & 1 other
2L	3093427	2L_3093427_SNP [dm3] 2L_3093427_SNP [dm6]	C	A	2.912e^-4	0.928	INTRON toc
2R	18052914	2R_18052914_SNP [dm3] 2R_22165409_SNP [dm6]	C	A	2.914e^-4	0.928	UPSTREAM CG34206 INTRON a
X	19357893	X_19357893_SNP [dm3] X_19463860_SNP [dm6]	T	A	2.919e^-4	0.928	INTRON kek5
3R	5478926	3R_5478926_SNP [dm3] 3R_9653204_SNP [dm6]	C	A	2.929e^-4	0.928	UTR_5_PRIME CG43441 INTRON CG9492
3L	7786348	3L_7786348_SNP [dm3] 3L_7793248_SNP [dm6]	A	T	2.931e^-4	0.928	INTRON CG32369
2L	828145	2L_828145_SNP [dm3] 2L_828145_SNP [dm6]	A	G	2.941e^-4	0.928	INTRON dock
3L	18331824	3L_18331824_SNP [dm3] 3L_18338724_SNP [dm6]	A	T	2.942e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	17479942	3L_17479942_SNP [dm3] 3L_17486842_SNP [dm6]	C	T	2.942e^-4	0.928	UPSTREAM Oatp74D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20866106	2L_20866106_DEL [dm3] 2L_20866106_DEL [dm6]	AG	A	2.944e^-4	0.928	INTRON CG9338	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	9000727	X_9000727_SNP [dm3] X_9106694_SNP [dm6]	A	G	2.950e^-4	0.928	UPSTREAM Arfrp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	11468862	3R_11468862_SNP [dm3] 3R_15643140_SNP [dm6]	C	T	2.968e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	3296035	X_3296035_INS [dm3] X_3402002_INS [dm6]	T	TT	2.980e^-4	0.928	INTRON CR44999 & 1 other
3L	5673277	3L_5673277_SNP [dm3] 3L_5680177_SNP [dm6]	T	C	2.981e^-4	0.928	INTRON sif
3R	16840240	3R_16840240_SNP [dm3] 3R_21014518_SNP [dm6]	T	C	2.987e^-4	0.928	UTR_3_PRIME Calx DOWNSTREAM Calx
3R	9292879	3R_9292879_SNP [dm3] 3R_13467157_SNP [dm6]	T	A	2.995e^-4	0.928	INTERGENIC
2R	18616512	2R_18616512_SNP [dm3] 2R_22729007_SNP [dm6]	C	T	3.003e^-4	0.928	INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5617658	2L_5617658_SNP [dm3] 2L_5617658_SNP [dm6]	T	C	3.007e^-4	0.928	UTR_5_PRIME CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6688110	X_6688110_SNP [dm3] X_6794077_SNP [dm6]	T	C	3.015e^-4	0.928	INTRON C3G	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18027774	2R_18027774_SNP [dm3] 2R_22140269_SNP [dm6]	T	C	3.017e^-4	0.928	SYNONYMOUS_CODING gom DOWNSTREAM CG11269 INTRON a
2L	18046484	2L_18046484_SNP [dm3] 2L_18046484_SNP [dm6]	G	A	3.018e^-4	0.928	INTRON rdo
3L	11393818	3L_11393818_SNP [dm3] 3L_11400718_SNP [dm6]	A	C	3.019e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11271845	3L_11271845_SNP [dm3] 3L_11278745_SNP [dm6]	G	A	3.025e^-4	0.928	INTERGENIC
3L	7656755	3L_7656755_SNP [dm3] 3L_7663655_SNP [dm6]	T	G	3.026e^-4	0.928	INTRON CG32373 & 2 others
2L	3498111	2L_3498111_SNP [dm3] 2L_3498111_SNP [dm6]	C	A	3.028e^-4	0.928	INTRON tim
2R	12394809	2R_12394809_SNP [dm3] 2R_16507304_SNP [dm6]	G	T	3.030e^-4	0.928	INTRON Sema-2a
2L	4177211	2L_4177211_SNP [dm3] 2L_4177211_SNP [dm6]	A	T	3.031e^-4	0.928	INTERGENIC
3R	3378740	3R_3378740_DEL [dm3] 3R_7553018_DEL [dm6]	GTCAGGTTAACCCAAGCGAG...	G	3.031e^-4	0.928	DOWNSTREAM CG45545 INTERGENIC
X	19386166	X_19386166_SNP [dm3] X_19492133_SNP [dm6]	C	A	3.043e^-4	0.928	UPSTREAM CG12203 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	14967673	2L_14967673_INS [dm3] 2L_14967673_INS [dm6]	A	AA	3.046e^-4	0.928	INTRON CG42313
3R	15877321	3R_15877321_SNP [dm3] 3R_20051599_SNP [dm6]	G	A	3.047e^-4	0.928	INTRON CG17193
2L	3497914	2L_3497914_SNP [dm3] 2L_3497914_SNP [dm6]	G	T	3.048e^-4	0.928	INTRON tim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9340678	3L_9340678_SNP [dm3] 3L_9347578_SNP [dm6]	G	A	3.051e^-4	0.928	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	5709558	3L_5709558_SNP [dm3] 3L_5716458_SNP [dm6]	T	C	3.056e^-4	0.928	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	13417631	3R_13417631_SNP [dm3] 3R_17591909_SNP [dm6]	A	T	3.060e^-4	0.928	INTERGENIC
2R	6298308	2R_6298308_SNP [dm3] 2R_10410803_SNP [dm6]	C	T	3.094e^-4	0.928	SYNONYMOUS_CODING CG33475 UPSTREAM CG33476 INTRON CG42732
3R	15838654	3R_15838654_SNP [dm3] 3R_20012932_SNP [dm6]	C	G	3.103e^-4	0.928	UPSTREAM CG4836 INTRON CG17190
3L	9366477	3L_9366477_SNP [dm3] 3L_9373377_SNP [dm6]	A	G	3.112e^-4	0.928	UPSTREAM Hsp67Bc & 1 other INTRON Hsp22 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	16775768	2R_16775768_SNP [dm3] 2R_20888263_SNP [dm6]	T	A	3.115e^-4	0.928	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	25118980	3R_25118980_SNP [dm3] 3R_29293258_SNP [dm6]	T	C	3.118e^-4	0.928	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	16775826	2R_16775826_SNP [dm3] 2R_20888321_SNP [dm6]	A	G	3.122e^-4	0.928	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	9506680	X_9506680_SNP [dm3] X_9612647_SNP [dm6]	C	A	3.130e^-4	0.928	INTRON CG42797	TF binding site mE1_TFBS_cad
3R	6193632	3R_6193632_SNP [dm3] 3R_10367910_SNP [dm6]	A	T	3.132e^-4	0.928	UPSTREAM Rfx INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7911966	2R_7911966_SNP [dm3] 2R_12024461_SNP [dm6]	T	G	3.134e^-4	0.928	SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24126056	3R_24126056_SNP [dm3] 3R_28300334_SNP [dm6]	T	C	3.134e^-4	0.928	INTERGENIC
3L	9756338	3L_9756338_SNP [dm3] 3L_9763238_SNP [dm6]	G	C	3.136e^-4	0.928	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7825024	2R_7825024_SNP [dm3] 2R_11937519_SNP [dm6]	A	C	3.137e^-4	0.928	INTERGENIC
3L	10579113	3L_10579113_SNP [dm3] 3L_10586013_SNP [dm6]	G	A	3.146e^-4	0.928	INTRON A2bp1
2R	10173102	2R_10173102_SNP [dm3] 2R_14285597_SNP [dm6]	T	G	3.153e^-4	0.928	INTRON Ih	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9847694	2L_9847694_SNP [dm3] 2L_9847694_SNP [dm6]	G	A	3.165e^-4	0.928	UPSTREAM CR43766 INTRON nAChRalpha6
2L	920889	2L_920889_SNP [dm3] 2L_920889_SNP [dm6]	A	G	3.166e^-4	0.928	INTERGENIC
2R	15873341	2R_15873341_SNP [dm3] 2R_19985836_SNP [dm6]	C	G	3.170e^-4	0.928	DOWNSTREAM CG8654 INTERGENIC
3R	15873233	3R_15873233_SNP [dm3] 3R_20047511_SNP [dm6]	C	T	3.172e^-4	0.928	INTRON CG17193 & 2 others
2R	9892596	2R_9892596_SNP [dm3] 2R_14005091_SNP [dm6]	G	T	3.178e^-4	0.928	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2810217	X_2810217_INS [dm3] X_2916184_INS [dm6]	T	TA	3.188e^-4	0.928	INTRON kirre
3R	14954355	3R_14954355_SNP [dm3] 3R_19128633_SNP [dm6]	C	A	3.190e^-4	0.928	INTRON CG6040
3L	8813708	3L_8813708_SNP [dm3] 3L_8820608_SNP [dm6]	G	A	3.190e^-4	0.928	INTERGENIC
3L	8887003	3L_8887003_SNP [dm3] 3L_8893903_SNP [dm6]	G	A	3.191e^-4	0.928	SYNONYMOUS_CODING Mcm7 DOWNSTREAM TrpA1	TF binding site mE1_TFBS_sens
2L	4946344	2L_4946344_SNP [dm3] 2L_4946344_SNP [dm6]	G	C	3.191e^-4	0.928	UPSTREAM mRpL24 INTRON betaggt-I
3R	11984834	3R_11984834_SNP [dm3] 3R_16159112_SNP [dm6]	T	G	3.197e^-4	0.928	UTR_5_PRIME CG6006 INTRON CG6006
2L	6862767	2L_6862767_SNP [dm3] 2L_6862767_SNP [dm6]	A	G	3.198e^-4	0.928	SYNONYMOUS_CODING Nha1	TF binding site mE1_TFBS_cad
3L	11393817	3L_11393817_SNP [dm3] 3L_11400717_SNP [dm6]	C	T	3.201e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19446792	X_19446792_SNP [dm3] X_19552759_SNP [dm6]	C	G	3.206e^-4	0.928	DOWNSTREAM mir-974 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10118202	3L_10118202_SNP [dm3] 3L_10125102_SNP [dm6]	T	C	3.206e^-4	0.928	INTRON dpr6
2L	3142319	2L_3142319_SNP [dm3] 2L_3142319_SNP [dm6]	A	G	3.215e^-4	0.928	INTRON toc
3R	20135485	3R_20135485_SNP [dm3] 3R_24309763_SNP [dm6]	A	C	3.220e^-4	0.928	INTRON crb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10139159	3L_10139159_SNP [dm3] 3L_10146059_SNP [dm6]	T	C	3.223e^-4	0.928	INTERGENIC
2L	9329247	2L_9329247_SNP [dm3] 2L_9329247_SNP [dm6]	C	T	3.235e^-4	0.928	SYNONYMOUS_CODING CG17005 UTR_3_PRIME CG17005
2L	12566834	2L_12566834_SNP [dm3] 2L_12566834_SNP [dm6]	C	T	3.249e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6289987	2R_6289987_SNP [dm3] 2R_10402482_SNP [dm6]	C	A	3.251e^-4	0.928	INTRON CG42732
2R	5809703	2R_5809703_SNP [dm3] 2R_9922198_SNP [dm6]	G	A	3.254e^-4	0.928	INTRON Mef2
3R	9743901	3R_9743901_SNP [dm3] 3R_13918179_SNP [dm6]	C	A	3.256e^-4	0.928	INTERGENIC
3L	9896618	3L_9896618_DEL [dm3] 3L_9903518_DEL [dm6]	AA	A	3.258e^-4	0.928	DOWNSTREAM nudE INTERGENIC
2R	13805964	2R_13805964_SNP [dm3] 2R_17918459_SNP [dm6]	C	T	3.259e^-4	0.928	INTRON Elk
X	12809575	X_12809575_SNP [dm3] X_12915542_SNP [dm6]	A	C	3.259e^-4	0.928	EXON CR45626
3L	4825177	3L_4825177_SNP [dm3] 3L_4825177_SNP [dm6]	T	C	3.276e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20863501	2L_20863501_SNP [dm3] 2L_20863501_SNP [dm6]	C	T	3.277e^-4	0.928	EXON CR9337
2R	14285323	2R_14285323_SNP [dm3] 2R_18397818_SNP [dm6]	C	T	3.279e^-4	0.928	UPSTREAM GstE1 & 1 other INTRON GstE10
2R	15339468	2R_15339468_SNP [dm3] 2R_19451963_SNP [dm6]	C	A	3.281e^-4	0.928	UPSTREAM CG7744 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
2R	16850525	2R_16850525_SNP [dm3] 2R_20963020_SNP [dm6]	A	G	3.285e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9000785	X_9000785_INS [dm3] X_9106752_INS [dm6]	C	CCAATGCTTGCAATGTTCCG...	3.287e^-4	0.928	UPSTREAM Arfrp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	7839484	3R_7839484_SNP [dm3] 3R_12013762_SNP [dm6]	A	C	3.290e^-4	0.928	NON_SYNONYMOUS_CODING GCC185	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9001649	X_9001649_INS [dm3] X_9107616_INS [dm6]	G	GTATAAG	3.295e^-4	0.928	INTRON Arfrp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18360000	X_18360000_DEL [dm3] X_18465967_DEL [dm6]	GT	G	3.297e^-4	0.928	INTRON CG32547	TF binding site mE1_TFBS_chinmo
3R	13565493	3R_13565493_SNP [dm3] 3R_17739771_SNP [dm6]	C	A	3.309e^-4	0.928	UTR_5_PRIME TyrRII INTRON TyrRII
X	4112858	X_4112858_SNP [dm3] X_4218825_SNP [dm6]	C	T	3.314e^-4	0.928	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15822372	2R_15822372_SNP [dm3] 2R_19934867_SNP [dm6]	G	T	3.316e^-4	0.928	EXON CR44627
2R	13796187	2R_13796187_SNP [dm3] 2R_17908682_SNP [dm6]	C	T	3.319e^-4	0.928	INTRON Elk
2L	9580387	2L_9580387_SNP [dm3] 2L_9580387_SNP [dm6]	G	A	3.320e^-4	0.928	SYNONYMOUS_CODING gcm UPSTREAM CG31709	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	18331747	3L_18331747_SNP [dm3] 3L_18338647_SNP [dm6]	G	A	3.323e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15884948	3R_15884948_SNP [dm3] 3R_20059226_SNP [dm6]	A	C	3.324e^-4	0.928	UTR_3_PRIME mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1
2L	10773744	2L_10773744_SNP [dm3] 2L_10773744_SNP [dm6]	A	G	3.329e^-4	0.928	NON_SYNONYMOUS_CODING CG31869	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3315988	X_3315988_SNP [dm3] X_3421955_SNP [dm6]	T	A	3.329e^-4	0.928	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16336750	3L_16336750_SNP [dm3] 3L_16343650_SNP [dm6]	A	T	3.336e^-4	0.928	INTRON CG4998	TF binding site mE1_TFBS_cad
X	14410160	X_14410160_SNP [dm3] X_14516127_SNP [dm6]	T	A	3.347e^-4	0.928	INTERGENIC
X	19505479	X_19505479_SNP [dm3] X_19611446_SNP [dm6]	T	A	3.349e^-4	0.928	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC
3L	16884284	3L_16884284_SNP [dm3] 3L_16891184_SNP [dm6]	G	C	3.363e^-4	0.928	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19115146	2R_19115146_SNP [dm3] 2R_23227623_SNP [dm6]	T	A	3.370e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4177162	2L_4177162_SNP [dm3] 2L_4177162_SNP [dm6]	C	T	3.379e^-4	0.928	INTERGENIC
2R	18259688	2R_18259688_SNP [dm3] 2R_22372183_SNP [dm6]	G	T	3.380e^-4	0.928	INTRON Liprin-gamma
2L	14046485	2L_14046485_SNP [dm3] 2L_14046485_SNP [dm6]	T	C	3.381e^-4	0.928	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	7277056	3R_7277056_SNP [dm3] 3R_11451334_SNP [dm6]	T	C	3.382e^-4	0.928	UPSTREAM sals INTRON CG17230 & 1 other
3L	1011838	3L_1011838_SNP [dm3] 3L_1011838_SNP [dm6]	G	T	3.382e^-4	0.928	INTRON trio
4	995018	4_995018_SNP [dm3] 4_974392_SNP [dm6]	A	G	3.391e^-4	0.928	UPSTREAM sphinx INTRON fuss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8739591	3L_8739591_SNP [dm3] 3L_8746491_SNP [dm6]	C	T	3.391e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs
3R	13938942	3R_13938942_SNP [dm3] 3R_18113220_SNP [dm6]	C	G	3.392e^-4	0.928	INTRON sr
2L	740334	2L_740334_SNP [dm3] 2L_740334_SNP [dm6]	T	G	3.393e^-4	0.928	INTRON Eaat2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	15716437	2R_15716437_SNP [dm3] 2R_19828932_SNP [dm6]	A	G	3.393e^-4	0.928	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17771066	3R_17771066_SNP [dm3] 3R_21945344_SNP [dm6]	G	T	3.394e^-4	0.928	INTERGENIC
2L	6300373	2L_6300373_SNP [dm3] 2L_6300373_SNP [dm6]	T	A	3.396e^-4	0.928	INTRON Ddr
3L	6984755	3L_6984755_SNP [dm3] 3L_6991655_SNP [dm6]	G	T	3.397e^-4	0.928	NON_SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7804864	3R_7804864_SNP [dm3] 3R_11979142_SNP [dm6]	T	C	3.408e^-4	0.928	SPLICE_SITE_REGION CG18547 UPSTREAM CR44135 INTRON CG18547	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25356688	3R_25356688_SNP [dm3] 3R_29530966_SNP [dm6]	T	G	3.408e^-4	0.928	INTERGENIC
3L	9340453	3L_9340453_SNP [dm3] 3L_9347353_SNP [dm6]	A	C	3.416e^-4	0.928	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	14280380	2R_14280380_SNP [dm3] 2R_18392875_SNP [dm6]	C	T	3.418e^-4	0.928	UPSTREAM Idgf5 INTERGENIC
3R	16841216	3R_16841216_SNP [dm3] 3R_21015494_SNP [dm6]	G	A	3.424e^-4	0.928	UTR_3_PRIME Calx UPSTREAM CG5697 DOWNSTREAM Calx
2R	9701847	2R_9701847_SNP [dm3] 2R_13814342_SNP [dm6]	A	T	3.424e^-4	0.928	INTRON stj
3R	10597683	3R_10597683_SNP [dm3] 3R_14771961_SNP [dm6]	T	A	3.435e^-4	0.928	INTRON jvl
2L	18648195	2L_18648195_SNP [dm3] 2L_18648195_SNP [dm6]	A	G	3.436e^-4	0.928	INTRON MESR3
2R	7911967	2R_7911967_SNP [dm3] 2R_12024462_SNP [dm6]	G	T	3.439e^-4	0.928	NON_SYNONYMOUS_CODING CG8964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16236011	2R_16236011_SNP [dm3] 2R_20348506_SNP [dm6]	T	A	3.439e^-4	0.928	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4815489	3L_4815489_SNP [dm3] 3L_4815489_SNP [dm6]	T	A	3.441e^-4	0.928	SPLICE_SITE_REGION Dhc64C INTRON Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4256464	3R_4256464_SNP [dm3] 3R_8430742_SNP [dm6]	A	G	3.443e^-4	0.928	INTRON CG45263
2L	4949453	2L_4949453_SNP [dm3] 2L_4949453_SNP [dm6]	T	C	3.450e^-4	0.928	NON_SYNONYMOUS_CODING jet DOWNSTREAM Jon25Biii	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17419724	2R_17419724_SNP [dm3] 2R_21532219_SNP [dm6]	T	C	3.450e^-4	0.928	UPSTREAM CR44725 INTRON Egfr
3R	14954376	3R_14954376_SNP [dm3] 3R_19128654_SNP [dm6]	G	C	3.451e^-4	0.928	INTRON CG6040
3R	22751296	3R_22751296_SNP [dm3] 3R_26925574_SNP [dm6]	T	A	3.452e^-4	0.928	INTRON sda
X	2404673	X_2404673_SNP [dm3] X_2510640_SNP [dm6]	G	A	3.455e^-4	0.928	INTRON trol
3R	27124530	3R_27124530_SNP [dm3] 3R_31298808_SNP [dm6]	T	C	3.457e^-4	0.928	INTERGENIC
3L	4815483	3L_4815483_SNP [dm3] 3L_4815483_SNP [dm6]	G	T	3.461e^-4	0.928	INTRON Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9000856	X_9000856_SNP [dm3] X_9106823_SNP [dm6]	T	G	3.466e^-4	0.928	UPSTREAM Arfrp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
4	915832	4_915832_SNP [dm3] 4_895206_SNP [dm6]	T	A	3.473e^-4	0.928	INTRON unc-13	transposable element FlyBase
3L	4824952	3L_4824952_SNP [dm3] 3L_4824952_SNP [dm6]	A	C	3.477e^-4	0.928	UPSTREAM Aats-leu INTRON Dhc64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4762683	2L_4762683_SNP [dm3] 2L_4762683_SNP [dm6]	C	T	3.484e^-4	0.928	UPSTREAM CG42523 INTRON CG15630
2R	20365097	2R_20365097_SNP [dm3] 2R_24477574_SNP [dm6]	T	C	3.489e^-4	0.928	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3R	15857144	3R_15857144_SNP [dm3] 3R_20031422_SNP [dm6]	T	C	3.493e^-4	0.928	UPSTREAM CG4936 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	19505483	X_19505483_SNP [dm3] X_19611450_SNP [dm6]	C	G	3.508e^-4	0.928	UPSTREAM Tyler & 1 other DOWNSTREAM CG14207 INTERGENIC
2L	21112555	2L_21112555_SNP [dm3] 2L_21112555_SNP [dm6]	G	T	3.530e^-4	0.928	INTRON Nhe2
3L	9756351	3L_9756351_SNP [dm3] 3L_9763251_SNP [dm6]	T	C	3.530e^-4	0.928	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11249675	3L_11249675_SNP [dm3] 3L_11256575_SNP [dm6]	T	G	3.534e^-4	0.928	DOWNSTREAM scyl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4601030	2L_4601030_SNP [dm3] 2L_4601030_SNP [dm6]	C	T	3.540e^-4	0.928	INTRON dp
3L	10632364	3L_10632364_SNP [dm3] 3L_10639264_SNP [dm6]	A	C	3.542e^-4	0.928	SYNONYMOUS_CODING CG8009 UPSTREAM CG18628
3L	12882691	3L_12882691_SNP [dm3] 3L_12889591_SNP [dm6]	A	C	3.559e^-4	0.928	UPSTREAM CG43894 DOWNSTREAM CG14120 EXON CR45748
X	18531897	X_18531897_SNP [dm3] X_18637864_SNP [dm6]	G	T	3.571e^-4	0.928	INTRON Rip11	TF binding site mE1_TFBS_cad
3L	4814718	3L_4814718_SNP [dm3] 3L_4814718_SNP [dm6]	G	A	3.577e^-4	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16680382	2R_16680382_SNP [dm3] 2R_20792877_SNP [dm6]	A	G	3.578e^-4	0.928	UPSTREAM CG15225 & 1 other INTERGENIC
3L	14412132	3L_14412132_SNP [dm3] 3L_14419032_SNP [dm6]	A	T	3.582e^-4	0.928	INTRON bbg
X	3919315	X_3919315_SNP [dm3] X_4025282_SNP [dm6]	C	G	3.584e^-4	0.928	INTERGENIC
2L	6319866	2L_6319866_DEL [dm3] 2L_6319866_DEL [dm6]	TT	T	3.589e^-4	0.928	INTRON Ddr
X	16901563	X_16901563_SNP [dm3] X_17007530_SNP [dm6]	G	A	3.591e^-4	0.928	INTRON CG45002
2L	6891125	2L_6891125_SNP [dm3] 2L_6891125_SNP [dm6]	C	A	3.591e^-4	0.928	INTRON Nlg2
2L	18177286	2L_18177286_SNP [dm3] 2L_18177286_SNP [dm6]	A	T	3.594e^-4	0.928	INTRON CG42750
X	6688097	X_6688097_SNP [dm3] X_6794064_SNP [dm6]	T	A	3.595e^-4	0.928	INTRON C3G	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6688103	X_6688103_SNP [dm3] X_6794070_SNP [dm6]	T	C	3.595e^-4	0.928	INTRON C3G	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9503991	3R_9503991_SNP [dm3] 3R_13678269_SNP [dm6]	G	T	3.597e^-4	0.928	INTRON lkb1
3R	8910118	3R_8910118_SNP [dm3] 3R_13084396_SNP [dm6]	T	G	3.600e^-4	0.928	INTERGENIC
2L	17716034	2L_17716034_SNP [dm3] 2L_17716034_SNP [dm6]	G	A	3.608e^-4	0.928	INTRON CadN	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	20169575	3R_20169575_SNP [dm3] 3R_24343853_SNP [dm6]	A	T	3.610e^-4	0.928	DOWNSTREAM CG5746 & 1 other INTERGENIC
2L	3767610	2L_3767610_SNP [dm3] 2L_3767610_SNP [dm6]	C	T	3.611e^-4	0.928	SYNONYMOUS_CODING CG43707 UPSTREAM mir-1004
3L	11413993	3L_11413993_SNP [dm3] 3L_11420893_SNP [dm6]	T	C	3.614e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14617471	3L_14617471_SNP [dm3] 3L_14624371_SNP [dm6]	C	G	3.623e^-4	0.928	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26353105	3R_26353105_SNP [dm3] 3R_30527383_SNP [dm6]	C	T	3.624e^-4	0.928	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
2L	3498010	2L_3498010_SNP [dm3] 2L_3498010_SNP [dm6]	A	T	3.628e^-4	0.928	INTRON tim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1521894	3L_1521894_SNP [dm3] 3L_1521894_SNP [dm6]	A	G	3.636e^-4	0.928	SYNONYMOUS_CODING Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11393879	3L_11393879_SNP [dm3] 3L_11400779_SNP [dm6]	C	G	3.638e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3827112	2L_3827112_INS [dm3] 2L_3827112_INS [dm6]	A	AGA	3.639e^-4	0.928	DOWNSTREAM slp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15148308	X_15148308_SNP [dm3] X_15254275_SNP [dm6]	G	A	3.639e^-4	0.928	INTERGENIC
2R	4729193	2R_4729193_SNP [dm3] 2R_8841688_SNP [dm6]	G	A	3.644e^-4	0.928	INTRON sns
2L	22492996	2L_22492996_SNP [dm3] 2L_22600264_SNP [dm6]	G	T	3.652e^-4	0.928	INTERGENIC
2L	7937819	2L_7937819_SNP [dm3] 2L_7937819_SNP [dm6]	G	C	3.660e^-4	0.928	INTRON Snoo
2L	12325865	2L_12325865_SNP [dm3] 2L_12325865_SNP [dm6]	C	G	3.661e^-4	0.928	INTERGENIC
3L	5777867	3L_5777867_SNP [dm3] 3L_5784767_SNP [dm6]	T	G	3.661e^-4	0.928	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
3R	15882599	3R_15882599_SNP [dm3] 3R_20056877_SNP [dm6]	C	A	3.670e^-4	0.928	SYNONYMOUS_CODING CG4390 UPSTREAM CG17193 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1505596	3L_1505596_SNP [dm3] 3L_1505596_SNP [dm6]	G	A	3.674e^-4	0.928	SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22751293	3R_22751293_SNP [dm3] 3R_26925571_SNP [dm6]	A	G	3.676e^-4	0.928	INTRON sda
X	4320449	X_4320449_SNP [dm3] X_4426416_SNP [dm6]	T	C	3.677e^-4	0.928	UPSTREAM bi INTRON CR32773 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3R	9398479	3R_9398479_SNP [dm3] 3R_13572757_SNP [dm6]	T	G	3.687e^-4	0.928	INTERGENIC
2R	10621224	2R_10621224_SNP [dm3] 2R_14733719_SNP [dm6]	C	T	3.700e^-4	0.928	INTERGENIC
3L	1962969	3L_1962969_SNP [dm3] 3L_1962969_SNP [dm6]	C	A	3.706e^-4	0.928	START_GAINED mv UTR_5_PRIME mv UPSTREAM SCOT
3R	25301978	3R_25301978_SNP [dm3] 3R_29476256_SNP [dm6]	A	G	3.707e^-4	0.928	SPLICE_SITE_REGION Ptp99A INTRON Ptp99A
3L	6254565	3L_6254565_SNP [dm3] 3L_6261465_SNP [dm6]	C	G	3.710e^-4	0.928	UPSTREAM ImpL3 INTRON ImpL3
3L	4814991	3L_4814991_SNP [dm3] 3L_4814991_SNP [dm6]	T	C	3.710e^-4	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4815012	3L_4815012_SNP [dm3] 3L_4815012_SNP [dm6]	A	G	3.710e^-4	0.928	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9808662	2L_9808662_SNP [dm3] 2L_9808662_SNP [dm6]	C	A	3.719e^-4	0.928	INTRON nAChRalpha6
X	1892668	X_1892668_SNP [dm3] X_1998635_SNP [dm6]	T	C	3.721e^-4	0.928	NON_SYNONYMOUS_CODING Hr4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9655986	2R_9655986_SNP [dm3] 2R_13768481_SNP [dm6]	G	A	3.721e^-4	0.928	INTERGENIC
2R	1919502	2R_1919502_SNP [dm3] 2R_6031997_SNP [dm6]	A	T	3.725e^-4	0.928	INTRON SCAP	TF binding site mE1_TFBS_HSA
X	3919306	X_3919306_SNP [dm3] X_4025273_SNP [dm6]	G	A	3.727e^-4	0.928	INTERGENIC
X	14732304	X_14732304_SNP [dm3] X_14838271_SNP [dm6]	T	C	3.739e^-4	0.928	UPSTREAM CG14407 DOWNSTREAM CG14410 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11586388	2R_11586388_SNP [dm3] 2R_15698883_SNP [dm6]	T	A	3.743e^-4	0.928	UTR_3_PRIME CG42662 & 1 other DOWNSTREAM CG33462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26574424	3R_26574424_SNP [dm3] 3R_30748702_SNP [dm6]	T	G	3.744e^-4	0.928	INTERGENIC
2R	17473680	2R_17473680_SNP [dm3] 2R_21586175_SNP [dm6]	A	C	3.744e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12809591	X_12809591_DEL [dm3] X_12915558_DEL [dm6]	AACTATCCA	A	3.752e^-4	0.928	EXON CR45626
3L	9710826	3L_9710826_SNP [dm3] 3L_9717726_SNP [dm6]	C	T	3.753e^-4	0.928	DOWNSTREAM CG18178 & 2 others INTERGENIC
3R	26536133	3R_26536133_SNP [dm3] 3R_30710411_SNP [dm6]	T	C	3.762e^-4	0.928	INTERGENIC
3R	18470666	3R_18470666_SNP [dm3] 3R_22644944_SNP [dm6]	G	C	3.763e^-4	0.928	INTRON CG45058
2R	18024100	2R_18024100_SNP [dm3] 2R_22136595_SNP [dm6]	A	G	3.764e^-4	0.928	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18906766	2L_18906766_SNP [dm3] 2L_18906766_SNP [dm6]	T	G	3.766e^-4	0.928	DOWNSTREAM CR44738 INTERGENIC
X	13902411	X_13902411_SNP [dm3] X_14008378_SNP [dm6]	C	T	3.771e^-4	0.928	INTERGENIC
2L	795476	2L_795476_SNP [dm3] 2L_795476_SNP [dm6]	G	T	3.772e^-4	0.928	INTERGENIC
2R	14908477	2R_14908477_SNP [dm3] 2R_19020972_SNP [dm6]	C	G	3.776e^-4	0.928	INTERGENIC
3R	8945904	3R_8945904_SNP [dm3] 3R_13120182_SNP [dm6]	G	T	3.777e^-4	0.928	INTRON timeout
2L	14218468	2L_14218468_SNP [dm3] 2L_14218468_SNP [dm6]	T	A	3.792e^-4	0.928	INTRON Dyrk2
3R	25146985	3R_25146985_SNP [dm3] 3R_29321263_SNP [dm6]	G	A	3.794e^-4	0.928	INTERGENIC
3R	2231803	3R_2231803_SNP [dm3] 3R_6406081_SNP [dm6]	A	C	3.795e^-4	0.928	UPSTREAM gpp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10621453	2R_10621453_SNP [dm3] 2R_14733948_SNP [dm6]	C	G	3.798e^-4	0.928	INTERGENIC
2L	22493389	2L_22493389_SNP [dm3] 2L_22600657_SNP [dm6]	C	T	3.806e^-4	0.928	INTERGENIC
3R	15873244	3R_15873244_SNP [dm3] 3R_20047522_SNP [dm6]	A	G	3.816e^-4	0.928	INTRON CG17193 & 2 others
2R	2741216	2R_2741216_SNP [dm3] 2R_6853711_SNP [dm6]	G	A	3.818e^-4	0.928	INTERGENIC
2R	19003558	2R_19003558_SNP [dm3] 2R_23116035_SNP [dm6]	A	C	3.819e^-4	0.928	INTERGENIC
2L	6579427	2L_6579427_SNP [dm3] 2L_6579427_SNP [dm6]	A	T	3.822e^-4	0.928	INTRON CG11319
2L	6282158	2L_6282158_SNP [dm3] 2L_6282158_SNP [dm6]	C	G	3.827e^-4	0.928	INTRON Ddr	TF binding site mE1_TFBS_chinmo
2L	13449441	2L_13449441_SNP [dm3] 2L_13449441_SNP [dm6]	A	C	3.832e^-4	0.928	UTR_5_PRIME Hsp60D INTRON CG42784
3R	25491711	3R_25491711_SNP [dm3] 3R_29665989_SNP [dm6]	G	C	3.836e^-4	0.928	SYNONYMOUS_CODING ppk21 DOWNSTREAM ppk20	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10455634	2L_10455634_SNP [dm3] 2L_10455634_SNP [dm6]	A	G	3.837e^-4	0.928	SYNONYMOUS_CODING CG5322
X	12167724	X_12167724_SNP [dm3] X_12273691_SNP [dm6]	T	G	3.837e^-4	0.928	UPSTREAM CG45603 INTRON Ten-a
3L	4030046	3L_4030046_SNP [dm3] 3L_4030046_SNP [dm6]	A	C	3.845e^-4	0.928	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
3R	15877862	3R_15877862_SNP [dm3] 3R_20052140_SNP [dm6]	C	T	3.850e^-4	0.928	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3L	11739845	3L_11739845_SNP [dm3] 3L_11746745_SNP [dm6]	G	A	3.852e^-4	0.928	INTRON CG6024
2R	2997651	2R_2997651_SNP [dm3] 2R_7110146_SNP [dm6]	C	T	3.856e^-4	0.928	INTRON esn	TF binding site mE1_TFBS_sens
3L	9567265	3L_9567265_INS [dm3] 3L_9574165_INS [dm6]	T	TTT	3.861e^-4	0.928	INTRON CG42673
3R	25146999	3R_25146999_SNP [dm3] 3R_29321277_SNP [dm6]	A	T	3.869e^-4	0.928	INTERGENIC
2R	16691959	2R_16691959_SNP [dm3] 2R_20804454_SNP [dm6]	G	A	3.869e^-4	0.928	INTERGENIC
X	12809617	X_12809617_SNP [dm3] X_12915584_SNP [dm6]	T	C	3.872e^-4	0.928	EXON CR45626
3L	21896208	3L_21896208_SNP [dm3] 3L_21903108_SNP [dm6]	G	A	3.874e^-4	0.928	INTRON mub
2L	19788917	2L_19788917_SNP [dm3] 2L_19788917_SNP [dm6]	T	C	3.875e^-4	0.928	INTRON CdGAPr
3L	8884507	3L_8884507_SNP [dm3] 3L_8891407_SNP [dm6]	A	T	3.877e^-4	0.928	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	19386158	X_19386158_SNP [dm3] X_19492125_SNP [dm6]	T	G	3.883e^-4	0.928	UPSTREAM CG12203 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	2796289	2L_2796289_SNP [dm3] 2L_2796289_SNP [dm6]	C	A	3.894e^-4	0.928	UPSTREAM Syt1 INTRON Syt1
3R	15858945	3R_15858945_SNP [dm3] 3R_20033223_SNP [dm6]	G	A	3.897e^-4	0.928	DOWNSTREAM CG10889 INTRON CG4936
2R	17372005	2R_17372005_SNP [dm3] 2R_21484500_SNP [dm6]	C	T	3.898e^-4	0.928	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18038399	X_18038399_DEL [dm3] X_18144366_DEL [dm6]	AA	A	3.899e^-4	0.928	INTERGENIC
3R	9292745	3R_9292745_SNP [dm3] 3R_13467023_SNP [dm6]	A	T	3.902e^-4	0.928	UPSTREAM CR17025 INTERGENIC
3L	15643704	3L_15643704_SNP [dm3] 3L_15650604_SNP [dm6]	A	T	3.915e^-4	0.928	UPSTREAM Eig71Ea & 1 other DOWNSTREAM Eig71Ec & 1 other INTERGENIC
3R	26889590	3R_26889590_SNP [dm3] 3R_31063868_SNP [dm6]	C	A	3.920e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
2L	795488	2L_795488_SNP [dm3] 2L_795488_SNP [dm6]	T	C	3.921e^-4	0.928	INTERGENIC
3R	23653275	3R_23653275_SNP [dm3] 3R_27827553_SNP [dm6]	C	T	3.929e^-4	0.928	INTRON CG34353
X	17402137	X_17402137_SNP [dm3] X_17508104_SNP [dm6]	T	G	3.933e^-4	0.928	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4112498	X_4112498_SNP [dm3] X_4218465_SNP [dm6]	C	T	3.941e^-4	0.928	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11393886	3L_11393886_INS [dm3] 3L_11400786_INS [dm6]	T	TG	3.943e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26574422	3R_26574422_SNP [dm3] 3R_30748700_SNP [dm6]	G	A	3.944e^-4	0.928	INTERGENIC
3L	8812113	3L_8812113_SNP [dm3] 3L_8819013_SNP [dm6]	A	T	3.944e^-4	0.928	INTERGENIC
2R	16236078	2R_16236078_SNP [dm3] 2R_20348573_SNP [dm6]	G	C	3.961e^-4	0.928	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18360186	X_18360186_SNP [dm3] X_18466153_SNP [dm6]	A	T	3.965e^-4	0.928	INTRON CG32547
2L	6890859	2L_6890859_INS [dm3] 2L_6890859_INS [dm6]	A	AGGTCTATGT	3.967e^-4	0.928	INTRON Nlg2
X	4285693	X_4285693_SNP [dm3] X_4391660_SNP [dm6]	T	C	3.968e^-4	0.928	INTRON CR32773
3R	9398430	3R_9398430_SNP [dm3] 3R_13572708_SNP [dm6]	A	G	3.969e^-4	0.928	INTERGENIC
X	11020876	X_11020876_SNP [dm3] X_11126843_SNP [dm6]	A	T	3.992e^-4	0.928	DOWNSTREAM Gtp-bp & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve
2R	15716377	2R_15716377_SNP [dm3] 2R_19828872_SNP [dm6]	A	G	3.997e^-4	0.928	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14955245	3R_14955245_SNP [dm3] 3R_19129523_SNP [dm6]	C	T	4.002e^-4	0.928	NON_SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2L	6282156	2L_6282156_SNP [dm3] 2L_6282156_SNP [dm6]	G	A	4.005e^-4	0.928	INTRON Ddr	TF binding site mE1_TFBS_chinmo
3R	6730087	3R_6730087_SNP [dm3] 3R_10904365_SNP [dm6]	C	T	4.012e^-4	0.928	INTERGENIC
2L	13303631	2L_13303631_SNP [dm3] 2L_13303631_SNP [dm6]	C	A	4.013e^-4	0.928	UTR_3_PRIME CG43778
3R	14954302	3R_14954302_SNP [dm3] 3R_19128580_SNP [dm6]	A	G	4.015e^-4	0.928	INTRON CG6040
3R	15838609	3R_15838609_SNP [dm3] 3R_20012887_SNP [dm6]	T	C	4.016e^-4	0.928	UPSTREAM CG4836 INTRON CG17190
2L	6800384	2L_6800384_SNP [dm3] 2L_6800384_SNP [dm6]	A	G	4.017e^-4	0.928	UTR_3_PRIME CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
3L	2387881	3L_2387881_SNP [dm3] 3L_2387881_SNP [dm6]	A	C	4.026e^-4	0.928	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15838950	3R_15838950_SNP [dm3] 3R_20013228_SNP [dm6]	G	A	4.027e^-4	0.928	UPSTREAM CG4836 INTRON CG17190
3R	2232449	3R_2232449_DEL [dm3] 3R_6406727_DEL [dm6]	ATTTCTCA	A	4.030e^-4	0.928	UPSTREAM gpp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18002999	2R_18002999_SNP [dm3] 2R_22115494_SNP [dm6]	T	C	4.031e^-4	0.928	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
X	10981931	X_10981931_SNP [dm3] X_11087898_SNP [dm6]	C	T	4.041e^-4	0.928	INTERGENIC
2R	18977900	2R_18977900_SNP [dm3] 2R_23090377_SNP [dm6]	G	A	4.044e^-4	0.928	SYNONYMOUS_CODING CG9876	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18532079	X_18532079_SNP [dm3] X_18638046_SNP [dm6]	C	G	4.053e^-4	0.928	INTRON Rip11	TF binding site mE1_TFBS_cad
X	8835964	X_8835964_SNP [dm3] X_8941931_SNP [dm6]	G	T	4.055e^-4	0.928	INTRON rdgA
2L	12379821	2L_12379821_SNP [dm3] 2L_12379821_SNP [dm6]	T	A	4.059e^-4	0.928	INTRON bru-2
3L	4815484	3L_4815484_SNP [dm3] 3L_4815484_SNP [dm6]	T	A	4.063e^-4	0.928	INTRON Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15884874	3R_15884874_SNP [dm3] 3R_20059152_SNP [dm6]	G	C	4.068e^-4	0.928	UTR_3_PRIME mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1
2L	13449412	2L_13449412_SNP [dm3] 2L_13449412_SNP [dm6]	A	G	4.075e^-4	0.928	START_GAINED Hsp60D UTR_5_PRIME Hsp60D INTRON CG42784 & 1 other
X	19709825	X_19709825_SNP [dm3] X_19815792_SNP [dm6]	G	C	4.078e^-4	0.928	UPSTREAM skpC INTERGENIC
3L	11664513	3L_11664513_SNP [dm3] 3L_11671413_SNP [dm6]	C	T	4.083e^-4	0.928	INTRON CG32085
3L	9710835	3L_9710835_SNP [dm3] 3L_9717735_SNP [dm6]	C	T	4.085e^-4	0.928	DOWNSTREAM CG18178 & 2 others INTERGENIC
X	10177172	X_10177172_SNP [dm3] X_10283139_SNP [dm6]	G	A	4.093e^-4	0.928	INTRON alpha-Man-I
3R	15890709	3R_15890709_SNP [dm3] 3R_20064987_SNP [dm6]	G	A	4.097e^-4	0.928	INTERGENIC
2R	9701899	2R_9701899_SNP [dm3] 2R_13814394_SNP [dm6]	G	A	4.098e^-4	0.928	NON_SYNONYMOUS_CODING stj
3L	8809925	3L_8809925_SNP [dm3] 3L_8816825_SNP [dm6]	G	A	4.103e^-4	0.928	INTERGENIC
2L	2805961	2L_2805961_SNP [dm3] 2L_2805961_SNP [dm6]	A	T	4.107e^-4	0.928	INTRON daw	TF binding site mE1_TFBS_chinmo
3L	960275	3L_960275_SNP [dm3] 3L_960275_SNP [dm6]	A	C	4.113e^-4	0.928	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	16887595	X_16887595_SNP [dm3] X_16993562_SNP [dm6]	C	G	4.117e^-4	0.928	INTRON CG45002
2L	4985671	2L_4985671_INS [dm3] 2L_4985671_INS [dm6]	T	TT	4.134e^-4	0.928	INTRON CG34126
X	2397510	X_2397510_SNP [dm3] X_2503477_SNP [dm6]	G	T	4.138e^-4	0.928	INTRON trol
3L	6785479	3L_6785479_SNP [dm3] 3L_6792379_SNP [dm6]	T	C	4.146e^-4	0.928	SYNONYMOUS_CODING vvl UTR_3_PRIME vvl	TF binding site mE1_TFBS_chinmo
3L	17239627	3L_17239627_SNP [dm3] 3L_17246527_SNP [dm6]	T	G	4.153e^-4	0.928	INTRON CR43870	TF binding site BDTNP1_TFBS_dl
3R	15889002	3R_15889002_SNP [dm3] 3R_20063280_SNP [dm6]	C	T	4.157e^-4	0.928	INTERGENIC
2L	6913730	2L_6913730_SNP [dm3] 2L_6913730_SNP [dm6]	A	G	4.160e^-4	0.928	SYNONYMOUS_CODING Wee1 DOWNSTREAM x16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15607322	3R_15607322_SNP [dm3] 3R_19781600_SNP [dm6]	C	A	4.173e^-4	0.928	SYNONYMOUS_CODING CG11407 DOWNSTREAM CG11391	TF binding site mE1_TFBS_sens
X	5666610	X_5666610_SNP [dm3] X_5772577_SNP [dm6]	G	A	4.176e^-4	0.928	DOWNSTREAM CG42264 INTRON CG42699	TF binding site mE1_TFBS_Trl
2R	17473664	2R_17473664_SNP [dm3] 2R_21586159_SNP [dm6]	T	G	4.181e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14062278	3R_14062278_SNP [dm3] 3R_18236556_SNP [dm6]	T	C	4.185e^-4	0.928	SYNONYMOUS_CODING repo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	11249672	3L_11249672_SNP [dm3] 3L_11256572_SNP [dm6]	A	T	4.186e^-4	0.928	DOWNSTREAM scyl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17961839	3L_17961839_SNP [dm3] 3L_17968739_SNP [dm6]	G	T	4.186e^-4	0.928	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11552718	2L_11552718_SNP [dm3] 2L_11552718_SNP [dm6]	T	C	4.199e^-4	0.928	INTERGENIC
2L	3142169	2L_3142169_SNP [dm3] 2L_3142169_SNP [dm6]	A	T	4.202e^-4	0.928	INTRON toc
X	20017129	X_20017129_SNP [dm3] X_20123096_SNP [dm6]	T	A	4.202e^-4	0.928	DOWNSTREAM CG34331 INTRON CG34331
2R	11284038	2R_11284038_SNP [dm3] 2R_15396533_SNP [dm6]	T	C	4.214e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2066884	2L_2066884_SNP [dm3] 2L_2066884_SNP [dm6]	G	C	4.215e^-4	0.928	NON_SYNONYMOUS_CODING dpr3
2L	2066885	2L_2066885_SNP [dm3] 2L_2066885_SNP [dm6]	C	T	4.215e^-4	0.928	NON_SYNONYMOUS_CODING dpr3
3R	7799325	3R_7799325_SNP [dm3] 3R_11973603_SNP [dm6]	G	A	4.220e^-4	0.928	SYNONYMOUS_CODING Tango9 DOWNSTREAM GC2	TF binding site mE1_TFBS_sens
X	18929572	X_18929572_SNP [dm3] X_19035539_SNP [dm6]	T	C	4.221e^-4	0.928	INTERGENIC
2R	13794464	2R_13794464_SNP [dm3] 2R_17906959_SNP [dm6]	G	C	4.221e^-4	0.928	INTRON Elk
2L	7938556	2L_7938556_SNP [dm3] 2L_7938556_SNP [dm6]	C	A	4.223e^-4	0.928	INTRON Snoo
2R	13849986	2R_13849986_SNP [dm3] 2R_17962481_SNP [dm6]	G	A	4.229e^-4	0.928	INTERGENIC
X	8702483	X_8702483_SNP [dm3] X_8808450_SNP [dm6]	A	C	4.231e^-4	0.928	INTERGENIC
2L	6293910	2L_6293910_SNP [dm3] 2L_6293910_SNP [dm6]	G	T	4.238e^-4	0.928	INTRON Ddr
3R	8374419	3R_8374419_SNP [dm3] 3R_12548697_SNP [dm6]	A	T	4.238e^-4	0.928	UPSTREAM Octbeta3R INTERGENIC
2R	16917433	2R_16917433_SNP [dm3] 2R_21029928_SNP [dm6]	G	A	4.244e^-4	0.928	EXON CR45148
2L	3014595	2L_3014595_SNP [dm3] 2L_3014595_SNP [dm6]	C	T	4.248e^-4	0.928	INTRON CG17265
2L	6178014	2L_6178014_SNP [dm3] 2L_6178014_SNP [dm6]	A	T	4.248e^-4	0.928	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	9743353	2R_9743353_SNP [dm3] 2R_13855848_SNP [dm6]	T	G	4.255e^-4	0.928	UPSTREAM CG6553 DOWNSTREAM tum EXON CR44367
2R	17473706	2R_17473706_SNP [dm3] 2R_21586201_SNP [dm6]	A	G	4.269e^-4	0.928	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24223798	3R_24223798_SNP [dm3] 3R_28398076_SNP [dm6]	T	C	4.273e^-4	0.928	INTERGENIC
2R	18067273	2R_18067273_SNP [dm3] 2R_22179768_SNP [dm6]	G	A	4.274e^-4	0.928	UTR_5_PRIME CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4740837	X_4740837_SNP [dm3] X_4846804_SNP [dm6]	A	G	4.282e^-4	0.928	INTRON CG42594
2L	16195736	2L_16195736_SNP [dm3] 2L_16195736_SNP [dm6]	C	G	4.287e^-4	0.928	UPSTREAM CR44734 DOWNSTREAM CR44735 INTERGENIC
2L	13747592	2L_13747592_SNP [dm3] 2L_13747592_SNP [dm6]	A	T	4.291e^-4	0.928	DOWNSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other	TF binding site mE1_TFBS_inv
3R	13419465	3R_13419465_INS [dm3] 3R_17593743_INS [dm6]	A	AA	4.291e^-4	0.928	UPSTREAM CG7587 INTERGENIC
3L	2145586	3L_2145586_SNP [dm3] 3L_2145586_SNP [dm6]	G	C	4.294e^-4	0.928	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8651716	3R_8651716_SNP [dm3] 3R_12825994_SNP [dm6]	C	T	4.296e^-4	0.928	INTERGENIC
3R	4151720	3R_4151720_SNP [dm3] 3R_8325998_SNP [dm6]	A	C	4.297e^-4	0.928	DOWNSTREAM CG7443 INTRON Poxm
3R	15889001	3R_15889001_SNP [dm3] 3R_20063279_SNP [dm6]	C	A	4.306e^-4	0.928	INTERGENIC
3R	4250675	3R_4250675_SNP [dm3] 3R_8424953_SNP [dm6]	A	T	4.306e^-4	0.928	INTRON CG45263
X	11840064	X_11840064_INS [dm3] X_11946031_INS [dm6]	T	TT	4.310e^-4	0.928	INTRON cac
3R	9744130	3R_9744130_SNP [dm3] 3R_13918408_SNP [dm6]	G	A	4.311e^-4	0.928	INTERGENIC
2L	6764768	2L_6764768_SNP [dm3] 2L_6764768_SNP [dm6]	A	T	4.312e^-4	0.928	NON_SYNONYMOUS_CODING CG11321
3R	27072611	3R_27072611_SNP [dm3] 3R_31246889_SNP [dm6]	T	G	4.318e^-4	0.928	INTRON qless
X	8522135	X_8522135_SNP [dm3] X_8628102_SNP [dm6]	T	A	4.324e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15892304	3R_15892304_SNP [dm3] 3R_20066582_SNP [dm6]	C	T	4.368e^-4	0.935	INTERGENIC
2L	16185678	2L_16185678_SNP [dm3] 2L_16185678_SNP [dm6]	T	A	4.368e^-4	0.935	INTRON Ca-alpha1D	TF binding site mE1_TFBS_cad
X	19357380	X_19357380_SNP [dm3] X_19463347_SNP [dm6]	A	T	4.383e^-4	0.936	INTRON kek5
2R	12004929	2R_12004929_SNP [dm3] 2R_16117424_SNP [dm6]	A	C	4.386e^-4	0.936	SYNONYMOUS_CODING Jhedup DOWNSTREAM Asph
2R	8801090	2R_8801090_SNP [dm3] 2R_12913585_SNP [dm6]	A	C	4.396e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16011811	2L_16011811_SNP [dm3] 2L_16011811_SNP [dm6]	T	G	4.396e^-4	0.936	INTRON beat-Ic
3R	15838828	3R_15838828_SNP [dm3] 3R_20013106_SNP [dm6]	G	A	4.403e^-4	0.936	UPSTREAM CG4836 INTRON CG17190
X	18636245	X_18636245_SNP [dm3] X_18742212_SNP [dm6]	C	T	4.413e^-4	0.936	INTERGENIC
2R	13812942	2R_13812942_SNP [dm3] 2R_17925437_SNP [dm6]	A	T	4.413e^-4	0.936	UTR_3_PRIME Elk
3L	11393890	3L_11393890_SNP [dm3] 3L_11400790_SNP [dm6]	A	T	4.423e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16011665	2L_16011665_SNP [dm3] 2L_16011665_SNP [dm6]	C	G	4.429e^-4	0.936	INTRON beat-Ic
3L	17795988	3L_17795988_SNP [dm3] 3L_17802888_SNP [dm6]	A	T	4.436e^-4	0.936	NON_SYNONYMOUS_CODING CG5589 UPSTREAM NUCB1	TF binding site mE1_TFBS_HSA
X	17402075	X_17402075_SNP [dm3] X_17508042_SNP [dm6]	G	A	4.439e^-4	0.936	UPSTREAM CG43658 INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	9714178	3R_9714178_SNP [dm3] 3R_13888456_SNP [dm6]	A	G	4.440e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6496640	3L_6496640_SNP [dm3] 3L_6503540_SNP [dm6]	T	G	4.441e^-4	0.936	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	16521038	2R_16521038_DEL [dm3] 2R_20633533_DEL [dm6]	CC	C	4.443e^-4	0.936	UPSTREAM Rcd6 DOWNSTREAM rig INTERGENIC
2R	12654757	2R_12654757_SNP [dm3] 2R_16767252_SNP [dm6]	G	A	4.449e^-4	0.936	SYNONYMOUS_CODING CG5348 INTRON unc-104
2R	7911422	2R_7911422_SNP [dm3] 2R_12023917_SNP [dm6]	T	C	4.454e^-4	0.936	SYNONYMOUS_CODING CG8964	TF binding site mE1_TFBS_cad
2L	13458317	2L_13458317_SNP [dm3] 2L_13458317_SNP [dm6]	C	A	4.462e^-4	0.936	DOWNSTREAM CG42809 INTRON CG42784 EXON CR45684
X	13507753	X_13507753_SNP [dm3] X_13613720_SNP [dm6]	G	A	4.463e^-4	0.936	UTR_3_PRIME tth DOWNSTREAM BthD
X	3295567	X_3295567_SNP [dm3] X_3401534_SNP [dm6]	C	T	4.470e^-4	0.936	INTRON CR44999 & 1 other
X	17155199	X_17155199_SNP [dm3] X_17261166_SNP [dm6]	T	G	4.471e^-4	0.936	INTRON f
X	6651063	X_6651063_SNP [dm3] X_6757030_SNP [dm6]	G	C	4.483e^-4	0.937	INTRON CG14438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9563960	2L_9563960_SNP [dm3] 2L_9563960_SNP [dm6]	G	A	4.498e^-4	0.937	INTRON jp
2L	2162131	2L_2162131_SNP [dm3] 2L_2162131_SNP [dm6]	A	G	4.507e^-4	0.937	UPSTREAM aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	13457172	2L_13457172_SNP [dm3] 2L_13457172_SNP [dm6]	T	C	4.511e^-4	0.937	UPSTREAM CG42809 INTRON CG42784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14129302	3R_14129302_SNP [dm3] 3R_18303580_SNP [dm6]	T	C	4.512e^-4	0.937	UTR_3_PRIME PKD UPSTREAM CG7126	TF binding site mE1_TFBS_cad
3R	8957226	3R_8957226_SNP [dm3] 3R_13131504_SNP [dm6]	C	A	4.521e^-4	0.937	NON_SYNONYMOUS_CODING 2mit DOWNSTREAM CR45109 INTRON timeout
3L	5052581	3L_5052581_SNP [dm3] 3L_5052581_SNP [dm6]	A	T	4.524e^-4	0.937	INTRON Con
3L	4816412	3L_4816412_SNP [dm3] 3L_4816412_SNP [dm6]	C	A	4.525e^-4	0.937	SYNONYMOUS_CODING Dhc64C
2R	14397507	2R_14397507_SNP [dm3] 2R_18510002_SNP [dm6]	G	A	4.525e^-4	0.937	INTERGENIC
2L	9854240	2L_9854240_SNP [dm3] 2L_9854240_SNP [dm6]	T	C	4.531e^-4	0.937	INTRON nAChRalpha6
3L	4815456	3L_4815456_INS [dm3] 3L_4815456_INS [dm6]	A	AATTC	4.536e^-4	0.937	INTRON Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8563661	3L_8563661_DEL [dm3] 3L_8570561_DEL [dm6]	GCAA	G	4.539e^-4	0.937	UTR_3_PRIME rhea DOWNSTREAM CR43910 INTRON rhea
2L	7224963	2L_7224963_SNP [dm3] 2L_7224963_SNP [dm6]	C	G	4.545e^-4	0.937	NON_SYNONYMOUS_CODING Ndae1 INTRON Ndae1
3R	7363903	3R_7363903_SNP [dm3] 3R_11538181_SNP [dm6]	A	G	4.546e^-4	0.937	INTRON dpr4
3R	15859535	3R_15859535_SNP [dm3] 3R_20033813_SNP [dm6]	A	T	4.558e^-4	0.937	DOWNSTREAM CG10889 INTRON CG4936
3R	15839091	3R_15839091_SNP [dm3] 3R_20013369_SNP [dm6]	G	A	4.559e^-4	0.937	UPSTREAM CG4836 INTRON CG17190
2L	14236234	2L_14236234_SNP [dm3] 2L_14236234_SNP [dm6]	C	A	4.567e^-4	0.937	EXON CR44728
3R	20169608	3R_20169608_INS [dm3] 3R_24343886_INS [dm6]	T	TC	4.573e^-4	0.937	DOWNSTREAM CG5746 & 1 other INTERGENIC
3L	4824843	3L_4824843_SNP [dm3] 3L_4824843_SNP [dm6]	C	T	4.577e^-4	0.937	INTRON Dhc64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6884792	2L_6884792_SNP [dm3] 2L_6884792_SNP [dm6]	C	A	4.578e^-4	0.937	INTRON Nlg2
X	20184099	X_20184099_SNP [dm3] X_20313072_SNP [dm6]	T	G	4.579e^-4	0.937	INTRON CG1504	TF binding site mE1_TFBS_chinmo
3L	15633584	3L_15633584_SNP [dm3] 3L_15640484_SNP [dm6]	A	G	4.590e^-4	0.937	INTRON comm3	TF binding site mE1_TFBS_hkb
3L	7820444	3L_7820444_SNP [dm3] 3L_7827344_SNP [dm6]	G	A	4.600e^-4	0.937	INTRON Pdp1
2R	7808492	2R_7808492_SNP [dm3] 2R_11920987_SNP [dm6]	A	G	4.607e^-4	0.937	INTERGENIC
X	14738059	X_14738059_SNP [dm3] X_14844026_SNP [dm6]	A	G	4.612e^-4	0.937	SYNONYMOUS_CODING CG12539 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13696735	2L_13696735_SNP [dm3] 2L_13696735_SNP [dm6]	A	T	4.619e^-4	0.937	INTRON CG31814
3L	9471581	3L_9471581_SNP [dm3] 3L_9478481_SNP [dm6]	T	C	4.624e^-4	0.937	INTRON Jarid2	TF binding site BDTNP1_TFBS_dl
X	4712745	X_4712745_SNP [dm3] X_4818712_SNP [dm6]	C	T	4.633e^-4	0.937	INTERGENIC
3L	5709453	3L_5709453_SNP [dm3] 3L_5716353_SNP [dm6]	G	T	4.640e^-4	0.937	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	15177769	3L_15177769_SNP [dm3] 3L_15184669_SNP [dm6]	T	A	4.642e^-4	0.937	INTERGENIC
X	18929264	X_18929264_SNP [dm3] X_19035231_SNP [dm6]	T	C	4.646e^-4	0.937	INTERGENIC
2L	10586634	2L_10586634_INS [dm3] 2L_10586634_INS [dm6]	A	AA	4.648e^-4	0.937	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14617094	3L_14617094_SNP [dm3] 3L_14623994_SNP [dm6]	C	A	4.648e^-4	0.937	INTRON CG9628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7209897	2L_7209897_SNP [dm3] 2L_7209897_SNP [dm6]	T	C	4.650e^-4	0.937	INTRON CG13784
3R	15854063	3R_15854063_SNP [dm3] 3R_20028341_SNP [dm6]	G	A	4.651e^-4	0.937	SPLICE_SITE_REGION CG4854 SYNONYMOUS_CODING CG4854 UPSTREAM CG4424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	8980479	2R_8980479_SNP [dm3] 2R_13092974_SNP [dm6]	T	G	4.656e^-4	0.937	INTERGENIC
2R	11304510	2R_11304510_DEL [dm3] 2R_15417005_DEL [dm6]	CTC	C	4.672e^-4	0.939	INTRON CG43729
2L	8746530	2L_8746530_SNP [dm3] 2L_8746530_SNP [dm6]	G	A	4.695e^-4	0.941	INTERGENIC
3R	14955201	3R_14955201_SNP [dm3] 3R_19129479_SNP [dm6]	C	T	4.697e^-4	0.941	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
3R	24223797	3R_24223797_SNP [dm3] 3R_28398075_SNP [dm6]	T	C	4.698e^-4	0.941	INTERGENIC
2L	14346944	2L_14346944_SNP [dm3] 2L_14346944_SNP [dm6]	C	G	4.704e^-4	0.941	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
3R	12764484	3R_12764484_SNP [dm3] 3R_16938762_SNP [dm6]	A	G	4.710e^-4	0.941	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5662350	2L_5662350_SNP [dm3] 2L_5662350_SNP [dm6]	C	A	4.717e^-4	0.941	UPSTREAM Hsp60C & 1 other INTERGENIC
3R	15395909	3R_15395909_SNP [dm3] 3R_19570187_SNP [dm6]	G	C	4.721e^-4	0.941	INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	21865367	3L_21865367_SNP [dm3] 3L_21872267_SNP [dm6]	A	T	4.723e^-4	0.941	INTRON mub
3R	9292730	3R_9292730_SNP [dm3] 3R_13467008_SNP [dm6]	G	T	4.727e^-4	0.941	UPSTREAM CR17025 INTERGENIC
3R	14954408	3R_14954408_SNP [dm3] 3R_19128686_SNP [dm6]	C	A	4.742e^-4	0.942	INTRON CG6040	transposable element FlyBase
3L	10473079	3L_10473079_DEL [dm3] 3L_10479979_DEL [dm6]	AC	A	4.749e^-4	0.942	INTERGENIC
X	16621103	X_16621103_SNP [dm3] X_16727070_SNP [dm6]	A	G	4.751e^-4	0.942	DOWNSTREAM CG9634 & 1 other INTERGENIC	transposable element FlyBase
2L	827693	2L_827693_SNP [dm3] 2L_827693_SNP [dm6]	T	A	4.759e^-4	0.942	INTRON dock	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2023752	2L_2023752_SNP [dm3] 2L_2023752_SNP [dm6]	G	A	4.760e^-4	0.942	UPSTREAM CG4238 INTRON CG4238
3L	8419499	3L_8419499_SNP [dm3] 3L_8426399_SNP [dm6]	A	C	4.771e^-4	0.942	SPLICE_SITE_REGION Cbl INTRON Cbl
X	9001601	X_9001601_SNP [dm3] X_9107568_SNP [dm6]	A	G	4.771e^-4	0.942	UPSTREAM Bx42 INTRON Arfrp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12172811	3L_12172811_SNP [dm3] 3L_12179711_SNP [dm6]	T	G	4.773e^-4	0.942	UPSTREAM CAH2 INTRON CAH2
3R	22575636	3R_22575636_SNP [dm3] 3R_26749914_SNP [dm6]	C	T	4.789e^-4	0.944	INTERGENIC
2L	3160915	2L_3160915_SNP [dm3] 2L_3160915_SNP [dm6]	G	T	4.798e^-4	0.944	SYNONYMOUS_CODING gkt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11600368	3R_11600368_SNP [dm3] 3R_15774646_SNP [dm6]	A	G	4.798e^-4	0.944	SYNONYMOUS_CODING CG4525 DOWNSTREAM CR45207 EXON CR45206
2R	16246643	2R_16246643_SNP [dm3] 2R_20359138_SNP [dm6]	G	C	4.805e^-4	0.945	INTERGENIC
3L	3435926	3L_3435926_SNP [dm3] 3L_3435926_SNP [dm6]	A	C	4.811e^-4	0.945	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi
3L	21906413	3L_21906413_SNP [dm3] 3L_21913313_SNP [dm6]	G	C	4.822e^-4	0.946	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16619706	2R_16619706_SNP [dm3] 2R_20732201_SNP [dm6]	G	A	4.824e^-4	0.946	INTRON dpr
3R	18587839	3R_18587839_SNP [dm3] 3R_22762117_SNP [dm6]	C	T	4.837e^-4	0.946	SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2L	3142174	2L_3142174_SNP [dm3] 2L_3142174_SNP [dm6]	A	G	4.848e^-4	0.946	INTRON toc
2R	4084753	2R_4084753_SNP [dm3] 2R_8197248_SNP [dm6]	T	C	4.850e^-4	0.946	INTRON LRP1
X	13937794	X_13937794_SNP [dm3] X_14043761_SNP [dm6]	C	T	4.863e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9248151	2R_9248151_SNP [dm3] 2R_13360646_SNP [dm6]	G	A	4.863e^-4	0.946	INTERGENIC
2R	18019012	2R_18019012_SNP [dm3] 2R_22131507_SNP [dm6]	A	T	4.865e^-4	0.946	UPSTREAM CG34205 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13977139	2R_13977139_SNP [dm3] 2R_18089634_SNP [dm6]	C	T	4.891e^-4	0.946	INTRON CG34386
2R	16248798	2R_16248798_SNP [dm3] 2R_20361293_SNP [dm6]	G	T	4.899e^-4	0.946	INTERGENIC
X	9000130	X_9000130_SNP [dm3] X_9106097_SNP [dm6]	T	C	4.900e^-4	0.946	UPSTREAM Arfrp1 INTRON Bx42	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	9945287	2L_9945287_SNP [dm3] 2L_9945287_SNP [dm6]	A	G	4.907e^-4	0.946	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11475904	3R_11475904_SNP [dm3] 3R_15650182_SNP [dm6]	G	A	4.907e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18636255	X_18636255_SNP [dm3] X_18742222_SNP [dm6]	T	C	4.911e^-4	0.946	INTERGENIC
2R	18040558	2R_18040558_SNP [dm3] 2R_22153053_SNP [dm6]	G	A	4.916e^-4	0.946	INTRON a	TF binding site mE1_TFBS_cnc
2R	18065204	2R_18065204_SNP [dm3] 2R_22177699_SNP [dm6]	T	G	4.917e^-4	0.946	SYNONYMOUS_CODING CG11170 UPSTREAM CR45151 DOWNSTREAM CG6758
2L	3142170	2L_3142170_SNP [dm3] 2L_3142170_SNP [dm6]	C	G	4.920e^-4	0.946	INTRON toc
2R	17420082	2R_17420082_SNP [dm3] 2R_21532577_SNP [dm6]	T	C	4.923e^-4	0.946	UPSTREAM CR44725 INTRON Egfr
2L	15304554	2L_15304554_SNP [dm3] 2L_15304554_SNP [dm6]	T	A	4.925e^-4	0.946	INTERGENIC
X	19387023	X_19387023_SNP [dm3] X_19492990_SNP [dm6]	G	T	4.926e^-4	0.946	NON_SYNONYMOUS_CODING CG12203 UPSTREAM pcm DOWNSTREAM CG12204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7214182	2L_7214182_SNP [dm3] 2L_7214182_SNP [dm6]	G	T	4.927e^-4	0.946	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26140788	3R_26140788_SNP [dm3] 3R_30315066_SNP [dm6]	C	A	4.930e^-4	0.946	INTRON hdc
3L	4828800	3L_4828800_SNP [dm3] 3L_4828800_SNP [dm6]	A	T	4.932e^-4	0.946	UTR_3_PRIME Aats-leu DOWNSTREAM CG13708
3R	2232073	3R_2232073_SNP [dm3] 3R_6406351_SNP [dm6]	C	T	4.945e^-4	0.946	UPSTREAM gpp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	960526	3L_960526_SNP [dm3] 3L_960526_SNP [dm6]	C	T	4.952e^-4	0.946	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2L	13611092	2L_13611092_SNP [dm3] 2L_13611092_SNP [dm6]	A	T	4.953e^-4	0.946	INTRON kuz
X	19282266	X_19282266_INS [dm3] X_19388233_INS [dm6]	T	TACAATACT	4.959e^-4	0.946	INTRON kek5
2L	5538701	2L_5538701_SNP [dm3] 2L_5538701_SNP [dm6]	T	G	4.960e^-4	0.946	DOWNSTREAM Hel25E INTRON CG14015	TF binding site mE1_TFBS_chinmo
2R	16248580	2R_16248580_SNP [dm3] 2R_20361075_SNP [dm6]	A	G	4.963e^-4	0.946	INTERGENIC
3L	13192793	3L_13192793_SNP [dm3] 3L_13199693_SNP [dm6]	A	C	4.967e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	20365082	2R_20365082_SNP [dm3] 2R_24477559_SNP [dm6]	G	A	4.971e^-4	0.946	INTRON CG13579	TF binding site mE1_TFBS_chinmo
X	5673540	X_5673540_SNP [dm3] X_5779507_SNP [dm6]	A	G	4.976e^-4	0.946	SYNONYMOUS_CODING CG3108 INTRON CG42699
X	18401473	X_18401473_SNP [dm3] X_18507440_SNP [dm6]	C	G	4.990e^-4	0.947	INTRON Ggt-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9974447	3L_9974447_SNP [dm3] 3L_9981347_SNP [dm6]	G	A	5.000e^-4	0.948	INTRON dpr6
2L	16887555	2L_16887555_SNP [dm3] 2L_16887555_SNP [dm6]	T	C	5.003e^-4	0.948	SYNONYMOUS_CODING CG6115 UPSTREAM tweek & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18946380	3R_18946380_SNP [dm3] 3R_23120658_SNP [dm6]	C	T	5.011e^-4	0.948	SYNONYMOUS_CODING CenB1A UPSTREAM CenB1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8303228	2L_8303228_SNP [dm3] 2L_8303228_SNP [dm6]	T	A	5.041e^-4	0.952	UPSTREAM Scgalpha & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	15488664	3R_15488664_SNP [dm3] 3R_19662942_SNP [dm6]	T	G	5.042e^-4	0.952	INTRON ort
3R	15488663	3R_15488663_SNP [dm3] 3R_19662941_SNP [dm6]	A	G	5.050e^-4	0.953	INTRON ort
3R	4278377	3R_4278377_SNP [dm3] 3R_8452655_SNP [dm6]	T	G	5.063e^-4	0.954	INTRON CG45263
2L	22493506	2L_22493506_SNP [dm3] 2L_22600774_SNP [dm6]	G	T	5.076e^-4	0.955	INTERGENIC
3L	3540894	3L_3540894_SNP [dm3] 3L_3540894_SNP [dm6]	G	C	5.083e^-4	0.955	INTRON Eip63E
2L	5539400	2L_5539400_INS [dm3] 2L_5539400_INS [dm6]	A	TTAT	5.084e^-4	0.955	UTR_3_PRIME Hel25E UPSTREAM CG14015 DOWNSTREAM Hel25E
2R	7807444	2R_7807444_SNP [dm3] 2R_11919939_SNP [dm6]	A	T	5.095e^-4	0.955	DOWNSTREAM CR44305 INTERGENIC
2L	7840268	2L_7840268_SNP [dm3] 2L_7840268_SNP [dm6]	G	T	5.143e^-4	0.955	UPSTREAM CG14537 EXON CR43100

Missing results

By genomic position
Variant impact
Gene name

se_GenomeSize phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results