DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.263e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.09663

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.4177	0.0666
In_3R_Mo	5.7557	0.0563

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2167 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16997846	2R_16997846_SNP [dm3] 2R_21110341_SNP [dm6]	C	T	1.863e^-7	0.35	INTRON ktub
3R	23267160	3R_23267160_SNP [dm3] 3R_27441438_SNP [dm6]	C	T	9.165e^-7	0.537	UPSTREAM CG44290 DOWNSTREAM CG43447 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23286867	3R_23286867_SNP [dm3] 3R_27461145_SNP [dm6]	C	T	1.740e^-6	0.537	INTERGENIC
2R	6388804	2R_6388804_SNP [dm3] 2R_10501299_SNP [dm6]	C	G	1.774e^-6	0.537	SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6726865	2L_6726865_SNP [dm3] 2L_6726865_SNP [dm6]	T	A	2.383e^-6	0.537	INTRON Liprin-alpha
2L	6726842	2L_6726842_SNP [dm3] 2L_6726842_SNP [dm6]	A	G	2.659e^-6	0.537	INTRON Liprin-alpha
2L	6541787	2L_6541787_SNP [dm3] 2L_6541787_SNP [dm6]	A	T	2.908e^-6	0.537	INTRON eya	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3L	5379735	3L_5379735_SNP [dm3] 3L_5386635_SNP [dm6]	T	C	2.954e^-6	0.537	INTERGENIC
3R	25981669	3R_25981669_SNP [dm3] 3R_30155947_SNP [dm6]	G	A	3.065e^-6	0.537	SYNONYMOUS_CODING CG11498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15062239	3R_15062239_SNP [dm3] 3R_19236517_SNP [dm6]	C	T	3.557e^-6	0.537	INTRON unc79
3R	25981617	3R_25981617_SNP [dm3] 3R_30155895_SNP [dm6]	C	A	3.576e^-6	0.537	INTRON CG11498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12993472	2R_12993472_SNP [dm3] 2R_17105967_SNP [dm6]	C	T	3.628e^-6	0.537	SYNONYMOUS_CODING CG30456
2L	12495504	2L_12495504_DEL [dm3] 2L_12495504_DEL [dm6]	GATACGG	G	3.932e^-6	0.537	INTRON bun
3L	936635	3L_936635_INS [dm3] 3L_936635_INS [dm6]	G	GCATCCG	4.362e^-6	0.537	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23321121	3R_23321121_SNP [dm3] 3R_27495399_SNP [dm6]	G	A	4.509e^-6	0.537	INTERGENIC
3L	15760116	3L_15760116_SNP [dm3] 3L_15767016_SNP [dm6]	C	T	4.795e^-6	0.537	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17424740	2R_17424740_SNP [dm3] 2R_21537235_SNP [dm6]	G	A	4.870e^-6	0.537	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_sens
3L	18760149	3L_18760149_SNP [dm3] 3L_18767049_SNP [dm6]	A	T	5.611e^-6	0.585	INTRON ftz-f1
3L	5379727	3L_5379727_SNP [dm3] 3L_5386627_SNP [dm6]	C	T	6.517e^-6	0.626	INTERGENIC
3R	13349142	3R_13349142_SNP [dm3] 3R_17523420_SNP [dm6]	G	A	6.676e^-6	0.626	INTERGENIC
3R	17823564	3R_17823564_SNP [dm3] 3R_21997842_SNP [dm6]	T	A	9.651e^-6	0.762	INTRON Eip93F
2L	12346148	2L_12346148_SNP [dm3] 2L_12346148_SNP [dm6]	A	T	1.008e^-5	0.762	INTRON bru-2
3L	2807667	3L_2807667_SNP [dm3] 3L_2807667_SNP [dm6]	G	T	1.009e^-5	0.762	INTRON CG43444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11495013	3R_11495013_SNP [dm3] 3R_15669291_SNP [dm6]	A	T	1.016e^-5	0.762	DOWNSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19198824	2L_19198824_SNP [dm3] 2L_19198824_SNP [dm6]	T	C	1.090e^-5	0.762	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	19140810	3R_19140810_DEL [dm3] 3R_23315088_DEL [dm6]	TTT	T	1.102e^-5	0.762	UPSTREAM pnt INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	21136189	X_21136189_SNP [dm3] X_21265162_SNP [dm6]	G	A	1.203e^-5	0.762	INTRON CG32521
2L	12490796	2L_12490796_SNP [dm3] 2L_12490796_SNP [dm6]	G	A	1.280e^-5	0.762	INTRON bun
2R	6681216	2R_6681216_SNP [dm3] 2R_10793711_SNP [dm6]	A	G	1.300e^-5	0.762	DOWNSTREAM mthl13 INTRON CG33144
X	7018239	X_7018239_SNP [dm3] X_7124206_SNP [dm6]	C	G	1.404e^-5	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6353025	2L_6353025_SNP [dm3] 2L_6353025_SNP [dm6]	G	A	1.433e^-5	0.762	INTRON ppk7	TF binding site mE1_TFBS_cad
2R	11768749	2R_11768749_SNP [dm3] 2R_15881244_SNP [dm6]	C	A	1.455e^-5	0.762	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15062248	3R_15062248_SNP [dm3] 3R_19236526_SNP [dm6]	T	A	1.500e^-5	0.762	INTRON unc79
3R	15062247	3R_15062247_SNP [dm3] 3R_19236525_SNP [dm6]	G	A	1.578e^-5	0.762	INTRON unc79
2L	6035179	2L_6035179_SNP [dm3] 2L_6035179_SNP [dm6]	C	A	1.582e^-5	0.762	SYNONYMOUS_CODING mtm UPSTREAM CG9109	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16818936	3L_16818936_SNP [dm3] 3L_16825836_SNP [dm6]	T	A	1.608e^-5	0.762	INTRON CG13024
3L	15760239	3L_15760239_SNP [dm3] 3L_15767139_SNP [dm6]	T	C	1.612e^-5	0.762	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12269717	2R_12269717_SNP [dm3] 2R_16382212_SNP [dm6]	G	T	1.642e^-5	0.762	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3L	5383897	3L_5383897_SNP [dm3] 3L_5390797_SNP [dm6]	A	T	1.675e^-5	0.762	INTERGENIC
3R	15062216	3R_15062216_SNP [dm3] 3R_19236494_SNP [dm6]	T	C	1.844e^-5	0.762	INTRON unc79
2L	5196557	2L_5196557_INS [dm3] 2L_5196557_INS [dm6]	G	GCTGACACATT...	2.019e^-5	0.762	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5196559	2L_5196559_SNP [dm3] 2L_5196559_SNP [dm6]	A	C	2.019e^-5	0.762	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	5196560	2L_5196560_SNP [dm3] 2L_5196560_SNP [dm6]	A	C	2.019e^-5	0.762	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	17424716	2R_17424716_SNP [dm3] 2R_21537211_SNP [dm6]	G	A	2.089e^-5	0.762	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_sens
2L	12621211	2L_12621211_SNP [dm3] 2L_12621211_SNP [dm6]	A	T	2.156e^-5	0.762	INTRON Ref2 & 1 other
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	2.165e^-5	0.762	DOWNSTREAM mthl13 INTRON CG33144
2R	12269740	2R_12269740_SNP [dm3] 2R_16382235_SNP [dm6]	C	T	2.172e^-5	0.762	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
X	11558741	X_11558741_SNP [dm3] X_11664708_SNP [dm6]	G	C	2.175e^-5	0.762	INTRON Ptp10D
X	14808101	X_14808101_SNP [dm3] X_14914068_SNP [dm6]	C	T	2.192e^-5	0.762	UPSTREAM CG12398 INTRON Flo2
2L	5196555	2L_5196555_SNP [dm3] 2L_5196555_SNP [dm6]	A	T	2.202e^-5	0.762	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14693535	2R_14693535_SNP [dm3] 2R_18806030_SNP [dm6]	T	C	2.236e^-5	0.762	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11558730	X_11558730_SNP [dm3] X_11664697_SNP [dm6]	T	C	2.271e^-5	0.762	INTRON Ptp10D
2L	11962505	2L_11962505_SNP [dm3] 2L_11962505_SNP [dm6]	A	T	2.336e^-5	0.762	INTRON CR43314
2L	10620568	2L_10620568_SNP [dm3] 2L_10620568_SNP [dm6]	T	G	2.450e^-5	0.762	SYNONYMOUS_CODING Trim9
3L	15760152	3L_15760152_SNP [dm3] 3L_15767052_SNP [dm6]	A	G	2.473e^-5	0.762	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12476355	2L_12476355_SNP [dm3] 2L_12476355_SNP [dm6]	T	G	2.610e^-5	0.762	INTRON bun
2R	9333427	2R_9333427_SNP [dm3] 2R_13445922_SNP [dm6]	A	G	2.642e^-5	0.762	SYNONYMOUS_CODING CG30062 UPSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_HSA
2L	5714048	2L_5714048_SNP [dm3] 2L_5714048_SNP [dm6]	T	C	2.657e^-5	0.762	DOWNSTREAM CG7236 INTERGENIC
2L	5196549	2L_5196549_SNP [dm3] 2L_5196549_SNP [dm6]	A	C	2.670e^-5	0.762	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	2.694e^-5	0.762	DOWNSTREAM mthl13 INTRON CG33144
2L	19198821	2L_19198821_SNP [dm3] 2L_19198821_SNP [dm6]	A	C	2.706e^-5	0.762	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	16647286	3R_16647286_SNP [dm3] 3R_20821564_SNP [dm6]	C	A	2.720e^-5	0.762	UPSTREAM RpS20 INTRON CG17271	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	11774944	2R_11774944_DEL [dm3] 2R_15887439_DEL [dm6]	CGTTTTCCCCTGGCTT...	TAA	2.728e^-5	0.762	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5379584	3L_5379584_SNP [dm3] 3L_5386484_SNP [dm6]	A	G	2.847e^-5	0.762	INTERGENIC
3R	13334653	3R_13334653_SNP [dm3] 3R_17508931_SNP [dm6]	C	T	2.868e^-5	0.762	INTERGENIC
3R	17928836	3R_17928836_SNP [dm3] 3R_22103114_SNP [dm6]	C	T	2.870e^-5	0.762	UPSTREAM CG13407 INTRON CG5778
3R	23623173	3R_23623173_SNP [dm3] 3R_27797451_SNP [dm6]	G	A	2.903e^-5	0.762	SYNONYMOUS_CODING CG34353
2R	9594334	2R_9594334_SNP [dm3] 2R_13706829_SNP [dm6]	C	T	2.968e^-5	0.762	SYNONYMOUS_CODING fas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17424737	2R_17424737_SNP [dm3] 2R_21537232_SNP [dm6]	G	A	2.988e^-5	0.762	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_sens
3R	13348981	3R_13348981_SNP [dm3] 3R_17523259_SNP [dm6]	A	G	2.996e^-5	0.762	INTERGENIC
2L	16002284	2L_16002284_SNP [dm3] 2L_16002284_SNP [dm6]	G	T	3.043e^-5	0.762	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6610150	3L_6610150_SNP [dm3] 3L_6617050_SNP [dm6]	C	T	3.050e^-5	0.762	SYNONYMOUS_CODING CG8398
2R	8905442	2R_8905442_SNP [dm3] 2R_13017937_SNP [dm6]	A	T	3.062e^-5	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	7230857	X_7230857_SNP [dm3] X_7336824_SNP [dm6]	C	A	3.068e^-5	0.762	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7412905	2R_7412905_SNP [dm3] 2R_11525400_SNP [dm6]	C	A	3.089e^-5	0.762	INTRON en	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15602071	3L_15602071_DEL [dm3] 3L_15608971_DEL [dm6]	TTCT	T	3.089e^-5	0.762	UTR_3_PRIME RhoGAP71E & 1 other
2R	2408449	2R_2408449_SNP [dm3] 2R_6520944_SNP [dm6]	C	T	3.307e^-5	0.797	INTRON jing
3L	12813192	3L_12813192_SNP [dm3] 3L_12820092_SNP [dm6]	G	A	3.341e^-5	0.797	NON_SYNONYMOUS_CODING CG42588
3R	19140723	3R_19140723_SNP [dm3] 3R_23315001_SNP [dm6]	G	A	3.367e^-5	0.797	UPSTREAM pnt INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14630881	3L_14630881_SNP [dm3] 3L_14637781_SNP [dm6]	C	T	3.401e^-5	0.797	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	5966799	3L_5966799_INS [dm3] 3L_5973699_INS [dm6]	T	TGGCAGAGTAAGCCCCT...	3.459e^-5	0.801	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	15062307	3R_15062307_SNP [dm3] 3R_19236585_SNP [dm6]	T	C	3.650e^-5	0.812	INTRON unc79
X	11558448	X_11558448_SNP [dm3] X_11664415_SNP [dm6]	C	T	3.725e^-5	0.812	INTRON Ptp10D
3R	23980433	3R_23980433_SNP [dm3] 3R_28154711_SNP [dm6]	G	A	3.738e^-5	0.812	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4775134	2L_4775134_SNP [dm3] 2L_4775134_SNP [dm6]	G	A	3.783e^-5	0.812	INTRON CG15630
2L	12447331	2L_12447331_SNP [dm3] 2L_12447331_SNP [dm6]	C	T	3.804e^-5	0.812	SYNONYMOUS_CODING CG5421
2L	5428938	2L_5428938_SNP [dm3] 2L_5428938_SNP [dm6]	T	C	3.804e^-5	0.812	INTERGENIC
2L	19762308	2L_19762308_SNP [dm3] 2L_19762308_SNP [dm6]	G	A	3.834e^-5	0.812	INTRON fbp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5714083	2L_5714083_SNP [dm3] 2L_5714083_SNP [dm6]	A	C	3.863e^-5	0.812	DOWNSTREAM CG7236 INTERGENIC
3L	16661555	3L_16661555_SNP [dm3] 3L_16668455_SNP [dm6]	C	T	3.909e^-5	0.812	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18568886	3R_18568886_SNP [dm3] 3R_22743164_SNP [dm6]	G	A	3.985e^-5	0.812	SYNONYMOUS_CODING vret DOWNSTREAM CG6985
X	11558451	X_11558451_SNP [dm3] X_11664418_SNP [dm6]	C	T	3.987e^-5	0.812	INTRON Ptp10D
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	4.024e^-5	0.812	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1602538	2R_1602538_SNP [dm3] 2R_5715033_SNP [dm6]	C	A	4.150e^-5	0.814	INTRON ap	TF binding site mE1_TFBS_cad
X	3528281	X_3528281_SNP [dm3] X_3634248_SNP [dm6]	A	G	4.160e^-5	0.814	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12269971	2R_12269971_SNP [dm3] 2R_16382466_SNP [dm6]	C	T	4.255e^-5	0.814	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
2R	20445422	2R_20445422_INS [dm3] 2R_24557899_INS [dm6]	T	TT	4.279e^-5	0.814	DOWNSTREAM ITP INTRON ITP
3R	12688518	3R_12688518_SNP [dm3] 3R_16862796_SNP [dm6]	T	C	4.329e^-5	0.814	INTRON iab-8	TF binding site mE1_TFBS_cad
X	18184280	X_18184280_SNP [dm3] X_18290247_SNP [dm6]	T	C	4.356e^-5	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10349571	2L_10349571_SNP [dm3] 2L_10349571_SNP [dm6]	A	T	4.371e^-5	0.814	INTRON CG34367
3L	5379710	3L_5379710_SNP [dm3] 3L_5386610_SNP [dm6]	G	A	4.381e^-5	0.814	INTERGENIC
3R	19140794	3R_19140794_SNP [dm3] 3R_23315072_SNP [dm6]	A	C	4.478e^-5	0.815	UPSTREAM pnt INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18568866	3R_18568866_SNP [dm3] 3R_22743144_SNP [dm6]	A	G	4.481e^-5	0.815	UTR_3_PRIME vret DOWNSTREAM CG6985
3R	18568839	3R_18568839_SNP [dm3] 3R_22743117_SNP [dm6]	G	A	4.526e^-5	0.815	UTR_3_PRIME vret DOWNSTREAM CG6985
2R	20452871	2R_20452871_DEL [dm3] 2R_24565348_DEL [dm6]	ATTA	A	4.565e^-5	0.815	UPSTREAM uri DOWNSTREAM CG11414 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18916430	3L_18916430_SNP [dm3] 3L_18923330_SNP [dm6]	C	A	4.656e^-5	0.822	UTR_3_PRIME CG32204
2L	5714051	2L_5714051_SNP [dm3] 2L_5714051_SNP [dm6]	T	A	4.691e^-5	0.822	DOWNSTREAM CG7236 INTERGENIC
3L	3912855	3L_3912855_SNP [dm3] 3L_3912855_SNP [dm6]	G	T	4.756e^-5	0.822	INTRON Eip63F-1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	16251242	3L_16251242_SNP [dm3] 3L_16258142_SNP [dm6]	T	G	4.776e^-5	0.822	UPSTREAM CG13054 DOWNSTREAM CG13053 INTERGENIC
2L	6555050	2L_6555050_SNP [dm3] 2L_6555050_SNP [dm6]	C	T	4.909e^-5	0.837	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6173428	3L_6173428_SNP [dm3] 3L_6180328_SNP [dm6]	A	G	5.206e^-5	0.848	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	11558445	X_11558445_SNP [dm3] X_11664412_SNP [dm6]	T	C	5.240e^-5	0.848	INTRON Ptp10D
2R	18329413	2R_18329413_SNP [dm3] 2R_22441908_SNP [dm6]	G	A	5.333e^-5	0.848	INTERGENIC
3L	3912857	3L_3912857_SNP [dm3] 3L_3912857_SNP [dm6]	T	C	5.540e^-5	0.848	INTRON Eip63F-1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	18037045	2L_18037045_SNP [dm3] 2L_18037045_SNP [dm6]	T	A	5.560e^-5	0.848	INTRON rdo
3R	18605993	3R_18605993_SNP [dm3] 3R_22780271_SNP [dm6]	T	C	5.571e^-5	0.848	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4169760	3L_4169760_SNP [dm3] 3L_4169760_SNP [dm6]	T	C	5.607e^-5	0.848	UPSTREAM CR44529 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	14105496	3R_14105496_SNP [dm3] 3R_18279774_SNP [dm6]	T	A	5.611e^-5	0.848	UPSTREAM CG7142 INTRON eIF-1A
X	15814313	X_15814313_INS [dm3] X_15920280_INS [dm6]	T	TA	5.631e^-5	0.848	UTR_3_PRIME CG8909
2L	12466874	2L_12466874_SNP [dm3] 2L_12466874_SNP [dm6]	C	T	5.634e^-5	0.848	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23625839	3R_23625839_SNP [dm3] 3R_27800117_SNP [dm6]	G	T	5.641e^-5	0.848	INTRON CG34353
2L	12275284	2L_12275284_INS [dm3] 2L_12275284_INS [dm6]	A	AAAA	5.748e^-5	0.848	INTRON aret
2L	4908467	2L_4908467_SNP [dm3] 2L_4908467_SNP [dm6]	A	G	5.781e^-5	0.848	DOWNSTREAM hoe1 INTERGENIC
2R	6299139	2R_6299139_SNP [dm3] 2R_10411634_SNP [dm6]	G	C	5.783e^-5	0.848	UPSTREAM CG33475 INTRON CG42732
2R	17123647	2R_17123647_SNP [dm3] 2R_21236142_SNP [dm6]	T	A	5.823e^-5	0.848	INTRON ASPP
3R	15062333	3R_15062333_SNP [dm3] 3R_19236611_SNP [dm6]	T	C	5.828e^-5	0.848	INTRON unc79
2R	18509287	2R_18509287_SNP [dm3] 2R_22621782_SNP [dm6]	C	A	5.847e^-5	0.848	INTRON CG33143
2R	1698326	2R_1698326_INS [dm3] 2R_5810821_INS [dm6]	CA	GGTAGGTAGGTATAT...	5.859e^-5	0.848	INTRON dpr12	TF binding site mE1_TFBS_HSA
X	8608225	X_8608225_INS [dm3] X_8714192_INS [dm6]	A	AAAAA	5.959e^-5	0.848	UPSTREAM CG1785 & 1 other INTRON CG2004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13394107	3R_13394107_SNP [dm3] 3R_17568385_SNP [dm6]	A	G	6.015e^-5	0.848	UTR_3_PRIME Hmx
X	8546857	X_8546857_SNP [dm3] X_8652824_SNP [dm6]	C	T	6.054e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16012036	2L_16012036_DEL [dm3] 2L_16012036_DEL [dm6]	TCAA	T	6.067e^-5	0.848	INTRON beat-Ic
2R	12270239	2R_12270239_DEL [dm3] 2R_16382734_DEL [dm6]	AAG	A	6.097e^-5	0.848	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3R	13655634	3R_13655634_SNP [dm3] 3R_17829912_SNP [dm6]	T	C	6.148e^-5	0.848	INTRON tinc
2R	17123642	2R_17123642_SNP [dm3] 2R_21236137_SNP [dm6]	G	A	6.171e^-5	0.848	INTRON ASPP
3R	23255310	3R_23255310_SNP [dm3] 3R_27429588_SNP [dm6]	G	T	6.318e^-5	0.848	INTRON side
2R	14691426	2R_14691426_SNP [dm3] 2R_18803921_SNP [dm6]	C	G	6.325e^-5	0.848	UPSTREAM l_2_08717 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	5329891	3R_5329891_SNP [dm3] 3R_9504169_SNP [dm6]	A	C	6.537e^-5	0.848	UPSTREAM CG8149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6503972	2R_6503972_DEL [dm3] 2R_10616467_DEL [dm6]	AA	A	6.707e^-5	0.848	UTR_3_PRIME psq DOWNSTREAM psq
2R	9146136	2R_9146136_SNP [dm3] 2R_13258631_SNP [dm6]	T	G	6.759e^-5	0.848	DOWNSTREAM CG10799 INTERGENIC
2L	18085647	2L_18085647_SNP [dm3] 2L_18085647_SNP [dm6]	C	A	6.801e^-5	0.848	INTRON CG31741	TF binding site mE1_TFBS_cad
2R	18509288	2R_18509288_SNP [dm3] 2R_22621783_SNP [dm6]	A	T	7.030e^-5	0.848	INTRON CG33143
2R	19284220	2R_19284220_SNP [dm3] 2R_23396697_SNP [dm6]	C	T	7.059e^-5	0.848	UPSTREAM CG3530 DOWNSTREAM CG3520 INTERGENIC
2L	8348181	2L_8348181_SNP [dm3] 2L_8348181_SNP [dm6]	C	T	7.120e^-5	0.848	INTRON CG7778
3R	23386777	3R_23386777_SNP [dm3] 3R_27561055_SNP [dm6]	G	A	7.290e^-5	0.848	UPSTREAM snmRNA:157 DOWNSTREAM wdb INTRON CG5646
2R	18506450	2R_18506450_SNP [dm3] 2R_22618945_SNP [dm6]	G	C	7.513e^-5	0.848	INTRON CG33143
2L	4774822	2L_4774822_SNP [dm3] 2L_4774822_SNP [dm6]	T	A	7.522e^-5	0.848	INTRON CG15630
2R	15819441	2R_15819441_SNP [dm3] 2R_19931936_SNP [dm6]	T	G	7.527e^-5	0.848	INTERGENIC
2L	16596683	2L_16596683_SNP [dm3] 2L_16596683_SNP [dm6]	G	C	7.539e^-5	0.848	INTRON CG42389
2L	14665818	2L_14665818_SNP [dm3] 2L_14665818_SNP [dm6]	T	A	7.583e^-5	0.848	INTRON osp
3R	18568825	3R_18568825_DEL [dm3] 3R_22743103_DEL [dm6]	CC	C	7.592e^-5	0.848	UTR_3_PRIME vret DOWNSTREAM CG6985
2R	20451647	2R_20451647_SNP [dm3] 2R_24564124_SNP [dm6]	T	C	7.613e^-5	0.848	NON_SYNONYMOUS_CODING CG11414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18508477	2R_18508477_SNP [dm3] 2R_22620972_SNP [dm6]	C	T	7.746e^-5	0.848	START_GAINED CG33143 UTR_5_PRIME CG33143
3R	10873566	3R_10873566_SNP [dm3] 3R_15047844_SNP [dm6]	G	A	7.795e^-5	0.848	INTERGENIC
3L	13147724	3L_13147724_SNP [dm3] 3L_13154624_SNP [dm6]	G	A	7.821e^-5	0.848	INTERGENIC
2R	18509212	2R_18509212_SNP [dm3] 2R_22621707_SNP [dm6]	C	A	7.895e^-5	0.848	INTRON CG33143
X	15362064	X_15362064_SNP [dm3] X_15468031_SNP [dm6]	A	C	7.899e^-5	0.848	SYNONYMOUS_CODING CG15641 UPSTREAM CG15642 DOWNSTREAM Grip128	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20931096	X_20931096_SNP [dm3] X_21060069_SNP [dm6]	T	A	7.915e^-5	0.848	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_run
2R	12801876	2R_12801876_SNP [dm3] 2R_16914371_SNP [dm6]	T	C	8.059e^-5	0.848	INTERGENIC
X	14317478	X_14317478_SNP [dm3] X_14423445_SNP [dm6]	A	G	8.131e^-5	0.848	INTRON dpr8
2L	12346179	2L_12346179_SNP [dm3] 2L_12346179_SNP [dm6]	A	G	8.194e^-5	0.848	INTRON bru-2
3L	18759801	3L_18759801_SNP [dm3] 3L_18766701_SNP [dm6]	C	T	8.241e^-5	0.848	UPSTREAM ftz-f1 INTRON ftz-f1
2L	5196556	2L_5196556_SNP [dm3] 2L_5196556_SNP [dm6]	G	T	8.256e^-5	0.848	DOWNSTREAM snmRNA:128 INTRON Msp300	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	9838612	2R_9838612_SNP [dm3] 2R_13951107_SNP [dm6]	A	G	8.258e^-5	0.848	INTRON AGO1
2L	4951064	2L_4951064_SNP [dm3] 2L_4951064_SNP [dm6]	C	G	8.265e^-5	0.848	UPSTREAM Jon25Biii INTERGENIC
2R	2811545	2R_2811545_SNP [dm3] 2R_6924040_SNP [dm6]	C	T	8.641e^-5	0.848	SYNONYMOUS_CODING CG3358 DOWNSTREAM mim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9677618	3L_9677618_SNP [dm3] 3L_9684518_SNP [dm6]	C	A	8.707e^-5	0.848	SPLICE_SITE_REGION CG6767 UPSTREAM CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad
2R	7053863	2R_7053863_SNP [dm3] 2R_11166358_SNP [dm6]	C	T	8.721e^-5	0.848	INTRON shn & 1 other
3L	19962992	3L_19962992_SNP [dm3] 3L_19969892_SNP [dm6]	G	T	8.750e^-5	0.848	INTRON Ac76E
2L	5154824	2L_5154824_SNP [dm3] 2L_5154824_SNP [dm6]	G	A	8.832e^-5	0.848	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
3L	19696767	3L_19696767_SNP [dm3] 3L_19703667_SNP [dm6]	G	T	8.899e^-5	0.848	INTRON serp
2R	8449031	2R_8449031_INS [dm3] 2R_12561526_INS [dm6]	T	TT	8.915e^-5	0.848	UPSTREAM CG30056 INTRON fra
2L	3798817	2L_3798817_SNP [dm3] 2L_3798817_SNP [dm6]	A	G	8.950e^-5	0.848	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
2R	12269311	2R_12269311_SNP [dm3] 2R_16381806_SNP [dm6]	A	G	9.014e^-5	0.848	UTR_3_PRIME CG43187
X	8774250	X_8774250_INS [dm3] X_8880217_INS [dm6]	A	AT	9.076e^-5	0.848	INTRON Moe	TF binding site mE1_TFBS_inv
X	3060648	X_3060648_SNP [dm3] X_3166615_SNP [dm6]	T	C	9.150e^-5	0.848	SYNONYMOUS_CODING N	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17415557	2R_17415557_SNP [dm3] 2R_21528052_SNP [dm6]	T	A	9.223e^-5	0.848	INTRON Egfr
2L	3499413	2L_3499413_SNP [dm3] 2L_3499413_SNP [dm6]	T	G	9.259e^-5	0.848	SYNONYMOUS_CODING tim UTR_3_PRIME tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9514048	2R_9514048_SNP [dm3] 2R_13626543_SNP [dm6]	A	G	9.294e^-5	0.848	INTRON fas
2R	1698341	2R_1698341_SNP [dm3] 2R_5810836_SNP [dm6]	C	T	9.504e^-5	0.848	INTRON dpr12	TF binding site mE1_TFBS_HSA
3L	13942860	3L_13942860_SNP [dm3] 3L_13949760_SNP [dm6]	A	T	9.510e^-5	0.848	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	1804086	2R_1804086_SNP [dm3] 2R_5916581_SNP [dm6]	C	T	9.547e^-5	0.848	INTRON CG43366	TF binding site mE1_TFBS_chinmo
3L	2276304	3L_2276304_SNP [dm3] 3L_2276304_SNP [dm6]	T	A	9.665e^-5	0.848	UPSTREAM yellow-g2 INTERGENIC
2L	1858111	2L_1858111_DEL [dm3] 2L_1858111_DEL [dm6]	AA	A	9.673e^-5	0.848	UTR_3_PRIME wry DOWNSTREAM CG31663
2L	16319523	2L_16319523_SNP [dm3] 2L_16319523_SNP [dm6]	G	T	9.698e^-5	0.848	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	5267866	X_5267866_SNP [dm3] X_5373833_SNP [dm6]	G	A	9.717e^-5	0.848	INTRON SK
2L	14998927	2L_14998927_SNP [dm3] 2L_14998927_SNP [dm6]	T	A	9.815e^-5	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12619343	2L_12619343_SNP [dm3] 2L_12619343_SNP [dm6]	G	T	9.862e^-5	0.848	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	12512376	2L_12512376_SNP [dm3] 2L_12512376_SNP [dm6]	C	A	9.904e^-5	0.848	INTRON bun
2L	12621256	2L_12621256_SNP [dm3] 2L_12621256_SNP [dm6]	G	T	9.933e^-5	0.848	INTRON Ref2 & 1 other
3L	15759989	3L_15759989_SNP [dm3] 3L_15766889_SNP [dm6]	T	G	9.939e^-5	0.848	INTERGENIC
2L	9926663	2L_9926663_SNP [dm3] 2L_9926663_SNP [dm6]	G	C	9.957e^-5	0.848	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
2L	9011946	2L_9011946_DEL [dm3] 2L_9011946_DEL [dm6]	GATTTAATATG...	C	9.986e^-5	0.848	UPSTREAM CG13102 DOWNSTREAM CG9568 & 1 other INTERGENIC
3L	10720381	3L_10720381_SNP [dm3] 3L_10727281_SNP [dm6]	G	A	1.000e^-4	0.848	INTERGENIC
2L	19919362	2L_19919362_SNP [dm3] 2L_19919362_SNP [dm6]	C	T	1.003e^-4	0.848	UPSTREAM CR43828 INTRON sick
2L	22140744	2L_22140744_SNP [dm3] 2L_22140744_SNP [dm6]	T	C	1.014e^-4	0.848	UTR_5_PRIME CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	12813213	3L_12813213_SNP [dm3] 3L_12820113_SNP [dm6]	T	G	1.014e^-4	0.848	NON_SYNONYMOUS_CODING CG42588
2L	11558840	2L_11558840_SNP [dm3] 2L_11558840_SNP [dm6]	A	G	1.022e^-4	0.848	INTERGENIC
3R	23270970	3R_23270970_SNP [dm3] 3R_27445248_SNP [dm6]	C	T	1.024e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5573026	2L_5573026_SNP [dm3] 2L_5573026_SNP [dm6]	C	G	1.036e^-4	0.848	INTERGENIC
3R	20999189	3R_20999189_SNP [dm3] 3R_25173467_SNP [dm6]	G	A	1.047e^-4	0.848	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	8709948	3L_8709948_SNP [dm3] 3L_8716848_SNP [dm6]	T	C	1.056e^-4	0.848	INTERGENIC
3R	10047250	3R_10047250_SNP [dm3] 3R_14221528_SNP [dm6]	C	A	1.062e^-4	0.848	NON_SYNONYMOUS_CODING CG33109 DOWNSTREAM Sp212
2L	8837982	2L_8837982_SNP [dm3] 2L_8837982_SNP [dm6]	A	T	1.075e^-4	0.848	INTERGENIC
2L	19129461	2L_19129461_INS [dm3] 2L_19129461_INS [dm6]	A	AAAGA	1.077e^-4	0.848	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	8080312	X_8080312_SNP [dm3] X_8186279_SNP [dm6]	C	A	1.079e^-4	0.848	INTRON sdt
3L	13930629	3L_13930629_SNP [dm3] 3L_13937529_SNP [dm6]	T	C	1.088e^-4	0.848	INTERGENIC
3L	5222951	3L_5222951_SNP [dm3] 3L_5229851_SNP [dm6]	A	G	1.088e^-4	0.848	INTRON shep
3L	8709391	3L_8709391_SNP [dm3] 3L_8716291_SNP [dm6]	C	T	1.092e^-4	0.848	INTERGENIC
3L	14441030	3L_14441030_SNP [dm3] 3L_14447930_SNP [dm6]	C	A	1.098e^-4	0.848	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12486845	2L_12486845_SNP [dm3] 2L_12486845_SNP [dm6]	C	T	1.106e^-4	0.848	INTRON bun
3R	10983521	3R_10983521_SNP [dm3] 3R_15157799_SNP [dm6]	T	C	1.108e^-4	0.848	INTRON Gyc88E
X	4751302	X_4751302_SNP [dm3] X_4857269_SNP [dm6]	G	A	1.113e^-4	0.848	INTRON CG42594
X	8612481	X_8612481_SNP [dm3] X_8718448_SNP [dm6]	C	A	1.115e^-4	0.848	SYNONYMOUS_CODING l_1_G0020	TF binding site mE1_TFBS_sens
2L	12622394	2L_12622394_SNP [dm3] 2L_12622394_SNP [dm6]	A	G	1.127e^-4	0.848	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	24103675	3L_24103675_SNP [dm3] 3L_24110575_SNP [dm6]	A	T	1.128e^-4	0.848	INTRON Snap25
3L	14480862	3L_14480862_SNP [dm3] 3L_14487762_SNP [dm6]	G	T	1.133e^-4	0.848	INTRON bbg
X	8608255	X_8608255_SNP [dm3] X_8714222_SNP [dm6]	C	A	1.135e^-4	0.848	UPSTREAM CG1785 & 1 other INTRON CG2004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6035695	2L_6035695_SNP [dm3] 2L_6035695_SNP [dm6]	T	G	1.141e^-4	0.848	SYNONYMOUS_CODING mtm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	20432609	2R_20432609_DEL [dm3] 2R_24545086_DEL [dm6]	TTGCTGTTGCTGC...	T	1.150e^-4	0.848	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19114991	2R_19114991_SNP [dm3] 2R_23227468_SNP [dm6]	G	A	1.162e^-4	0.848	INTERGENIC
3R	23902624	3R_23902624_SNP [dm3] 3R_28076902_SNP [dm6]	G	T	1.165e^-4	0.848	INTRON CG34362
2R	12270287	2R_12270287_DEL [dm3] 2R_16382782_DEL [dm6]	CTGGGGAGTGGC...	C	1.171e^-4	0.848	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3L	10228882	3L_10228882_INS [dm3] 3L_10235782_INS [dm6]	G	GG	1.176e^-4	0.848	UPSTREAM CR44542 INTERGENIC
X	16803718	X_16803718_SNP [dm3] X_16909685_SNP [dm6]	G	C	1.199e^-4	0.848	INTRON CR44754
3L	12813937	3L_12813937_SNP [dm3] 3L_12820837_SNP [dm6]	T	C	1.211e^-4	0.848	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
2R	18737257	2R_18737257_SNP [dm3] 2R_22849734_SNP [dm6]	T	A	1.212e^-4	0.848	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
4	847380	4_847380_SNP [dm3] 4_826754_SNP [dm6]	A	C	1.217e^-4	0.848	INTRON Sox102F	TF binding site mE1_TFBS_HSA
3L	4984377	3L_4984377_SNP [dm3] 3L_4984377_SNP [dm6]	G	A	1.224e^-4	0.848	INTRON Con
3L	7300051	3L_7300051_SNP [dm3] 3L_7306951_SNP [dm6]	T	G	1.225e^-4	0.848	INTRON unc-13-4A
2L	7108357	2L_7108357_SNP [dm3] 2L_7108357_SNP [dm6]	A	T	1.239e^-4	0.848	INTRON Pvf3
2R	18509315	2R_18509315_SNP [dm3] 2R_22621810_SNP [dm6]	G	T	1.240e^-4	0.848	INTRON CG33143
2L	9633126	2L_9633126_SNP [dm3] 2L_9633126_SNP [dm6]	T	C	1.244e^-4	0.848	INTERGENIC
2L	12472718	2L_12472718_SNP [dm3] 2L_12472718_SNP [dm6]	G	A	1.248e^-4	0.848	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	503834	3L_503834_SNP [dm3] 3L_503834_SNP [dm6]	G	C	1.248e^-4	0.848	INTRON klar
3R	8216178	3R_8216178_SNP [dm3] 3R_12390456_SNP [dm6]	T	C	1.249e^-4	0.848	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2R	18507420	2R_18507420_DEL [dm3] 2R_22619915_DEL [dm6]	GAG	G	1.249e^-4	0.848	UTR_5_PRIME CG33143
2L	19935485	2L_19935485_SNP [dm3] 2L_19935485_SNP [dm6]	T	G	1.250e^-4	0.848	UTR_5_PRIME sick INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13263826	X_13263826_SNP [dm3] X_13369793_SNP [dm6]	C	T	1.258e^-4	0.848	UPSTREAM CG1640 INTRON dmrt11E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5322727	3R_5322727_SNP [dm3] 3R_9497005_SNP [dm6]	T	A	1.266e^-4	0.848	DOWNSTREAM RhoL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	8334008	2R_8334008_SNP [dm3] 2R_12446503_SNP [dm6]	C	T	1.273e^-4	0.848	INTRON Dyb	transposable element FlyBase
2L	21927458	2L_21927458_SNP [dm3] 2L_21927458_SNP [dm6]	T	C	1.283e^-4	0.848	INTERGENIC	transposable element FlyBase
2R	18508556	2R_18508556_SNP [dm3] 2R_22621051_SNP [dm6]	A	G	1.286e^-4	0.848	UTR_5_PRIME CG33143	TF binding site mE1_TFBS_inv
2L	3262674	2L_3262674_SNP [dm3] 2L_3262674_SNP [dm6]	G	T	1.304e^-4	0.848	UPSTREAM CR45338 INTERGENIC
3L	19232894	3L_19232894_SNP [dm3] 3L_19239794_SNP [dm6]	C	T	1.312e^-4	0.848	DOWNSTREAM CR43892 INTERGENIC
2L	21928449	2L_21928449_SNP [dm3] 2L_21928449_SNP [dm6]	C	T	1.312e^-4	0.848	INTERGENIC	transposable element FlyBase
2R	15921065	2R_15921065_SNP [dm3] 2R_20033560_SNP [dm6]	C	G	1.313e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	5968832	2L_5968832_SNP [dm3] 2L_5968832_SNP [dm6]	C	T	1.331e^-4	0.848	SYNONYMOUS_CODING Ucp4C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3113013	2R_3113013_SNP [dm3] 2R_7225508_SNP [dm6]	T	C	1.335e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20376459	2L_20376459_SNP [dm3] 2L_20376459_SNP [dm6]	C	G	1.344e^-4	0.848	DOWNSTREAM CG16798 INTERGENIC
3R	25118980	3R_25118980_SNP [dm3] 3R_29293258_SNP [dm6]	T	C	1.352e^-4	0.848	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	24103403	3L_24103403_SNP [dm3] 3L_24110303_SNP [dm6]	C	T	1.356e^-4	0.848	INTRON Snap25
2L	16551092	2L_16551092_SNP [dm3] 2L_16551092_SNP [dm6]	T	G	1.366e^-4	0.848	INTRON CG42389
2L	12622391	2L_12622391_SNP [dm3] 2L_12622391_SNP [dm6]	A	G	1.371e^-4	0.848	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25127947	3R_25127947_SNP [dm3] 3R_29302225_SNP [dm6]	A	T	1.372e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5619465	2L_5619465_SNP [dm3] 2L_5619465_SNP [dm6]	T	C	1.374e^-4	0.848	DOWNSTREAM CR44796 INTERGENIC
3R	9484663	3R_9484663_SNP [dm3] 3R_13658941_SNP [dm6]	A	G	1.387e^-4	0.848	SYNONYMOUS_CODING Hrb87F
3R	10406220	3R_10406220_SNP [dm3] 3R_14580498_SNP [dm6]	G	A	1.392e^-4	0.848	INTRON stumps	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25395401	3R_25395401_DEL [dm3] 3R_29569679_DEL [dm6]	GTG	G	1.393e^-4	0.848	INTERGENIC
2R	16435981	2R_16435981_SNP [dm3] 2R_20548476_SNP [dm6]	G	A	1.395e^-4	0.848	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
3L	7708703	3L_7708703_DEL [dm3] 3L_7715603_DEL [dm6]	CAGAGCATCC	C	1.395e^-4	0.848	INTRON CG32373 & 1 other
3L	963870	3L_963870_SNP [dm3] 3L_963870_SNP [dm6]	C	T	1.400e^-4	0.848	INTRON Glut1
2L	18081709	2L_18081709_SNP [dm3] 2L_18081709_SNP [dm6]	C	T	1.407e^-4	0.848	SYNONYMOUS_CODING ninaD DOWNSTREAM Arr1
2L	18103647	2L_18103647_DEL [dm3] 2L_18103647_DEL [dm6]	ATGCCGCCCAA...	A	1.411e^-4	0.848	INTERGENIC
3L	9688096	3L_9688096_SNP [dm3] 3L_9694996_SNP [dm6]	C	T	1.413e^-4	0.848	UPSTREAM CR45121 & 1 other INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16002338	2L_16002338_SNP [dm3] 2L_16002338_SNP [dm6]	C	T	1.417e^-4	0.848	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5218134	X_5218134_SNP [dm3] X_5324101_SNP [dm6]	T	C	1.420e^-4	0.848	SYNONYMOUS_CODING Mcm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	5714116	2L_5714116_SNP [dm3] 2L_5714116_SNP [dm6]	C	A	1.429e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
3L	24103471	3L_24103471_SNP [dm3] 3L_24110371_SNP [dm6]	T	C	1.433e^-4	0.848	INTRON Snap25
3R	24035678	3R_24035678_SNP [dm3] 3R_28209956_SNP [dm6]	T	C	1.433e^-4	0.848	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	19735457	X_19735457_SNP [dm3] X_19841424_SNP [dm6]	G	T	1.438e^-4	0.848	INTRON pico	TF binding site BDTNP1_TFBS_da
2R	15819425	2R_15819425_SNP [dm3] 2R_19931920_SNP [dm6]	C	T	1.439e^-4	0.848	INTERGENIC
X	21091139	X_21091139_SNP [dm3] X_21220112_SNP [dm6]	G	C	1.444e^-4	0.848	INTRON CG32521
2L	3370865	2L_3370865_SNP [dm3] 2L_3370865_SNP [dm6]	C	T	1.447e^-4	0.848	INTRON CG34394
2L	5714128	2L_5714128_DEL [dm3] 2L_5714128_DEL [dm6]	CC	C	1.456e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
2L	22140793	2L_22140793_SNP [dm3] 2L_22140793_SNP [dm6]	C	T	1.457e^-4	0.848	UTR_5_PRIME CG42748	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	15624453	3L_15624453_SNP [dm3] 3L_15631353_SNP [dm6]	A	G	1.462e^-4	0.848	INTRON comm3
3L	1578157	3L_1578157_SNP [dm3] 3L_1578157_SNP [dm6]	A	G	1.465e^-4	0.848	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	5007701	2L_5007701_SNP [dm3] 2L_5007701_SNP [dm6]	A	G	1.468e^-4	0.848	INTRON Rtnl1	TF binding site mE1_TFBS_inv
3R	17819656	3R_17819656_SNP [dm3] 3R_21993934_SNP [dm6]	T	A	1.469e^-4	0.848	INTRON Eip93F
2L	3184743	2L_3184743_SNP [dm3] 2L_3184743_SNP [dm6]	G	A	1.471e^-4	0.848	INTRON CG34393
X	10861130	X_10861130_DEL [dm3] X_10967097_DEL [dm6]	CGTCGGTC	C	1.493e^-4	0.848	UTR_5_PRIME C901 DOWNSTREAM CG42339	TF binding site mE1_TFBS_inv
2L	5714059	2L_5714059_SNP [dm3] 2L_5714059_SNP [dm6]	C	T	1.494e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
2L	5714060	2L_5714060_SNP [dm3] 2L_5714060_SNP [dm6]	A	T	1.494e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
2L	5714084	2L_5714084_SNP [dm3] 2L_5714084_SNP [dm6]	G	T	1.494e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
2L	5714088	2L_5714088_SNP [dm3] 2L_5714088_SNP [dm6]	G	C	1.494e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
2L	5714104	2L_5714104_SNP [dm3] 2L_5714104_SNP [dm6]	A	G	1.494e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
3R	25335758	3R_25335758_SNP [dm3] 3R_29510036_SNP [dm6]	T	A	1.497e^-4	0.848	INTERGENIC
2R	14691220	2R_14691220_SNP [dm3] 2R_18803715_SNP [dm6]	G	A	1.498e^-4	0.848	UTR_5_PRIME l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	1028795	3L_1028795_SNP [dm3] 3L_1028795_SNP [dm6]	A	C	1.501e^-4	0.848	INTRON trio
3R	13361922	3R_13361922_SNP [dm3] 3R_17536200_SNP [dm6]	T	C	1.502e^-4	0.848	SYNONYMOUS_CODING P5cr-2 START_GAINED P5cr-2 UTR_5_PRIME P5cr-2 DOWNSTREAM l_3_07882
3R	15719749	3R_15719749_SNP [dm3] 3R_19894027_SNP [dm6]	G	A	1.502e^-4	0.848	INTRON CG4733	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14249495	2L_14249495_SNP [dm3] 2L_14249495_SNP [dm6]	T	A	1.511e^-4	0.848	INTERGENIC
3L	10118445	3L_10118445_SNP [dm3] 3L_10125345_SNP [dm6]	T	G	1.523e^-4	0.848	INTRON dpr6
2L	20392904	2L_20392904_SNP [dm3] 2L_20392904_SNP [dm6]	T	C	1.531e^-4	0.848	INTRON CG10947
2R	14663484	2R_14663484_SNP [dm3] 2R_18775979_SNP [dm6]	A	G	1.532e^-4	0.848	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16002337	2L_16002337_SNP [dm3] 2L_16002337_SNP [dm6]	C	T	1.537e^-4	0.848	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17422491	2R_17422491_SNP [dm3] 2R_21534986_SNP [dm6]	G	A	1.540e^-4	0.848	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	11112394	3R_11112394_SNP [dm3] 3R_15286672_SNP [dm6]	A	G	1.545e^-4	0.848	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13553305	3L_13553305_SNP [dm3] 3L_13560205_SNP [dm6]	A	T	1.550e^-4	0.848	INTRON bru-3
2R	16436019	2R_16436019_SNP [dm3] 2R_20548514_SNP [dm6]	G	A	1.556e^-4	0.848	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2L	7537667	2L_7537667_SNP [dm3] 2L_7537667_SNP [dm6]	G	C	1.565e^-4	0.848	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	5419364	2L_5419364_SNP [dm3] 2L_5419364_SNP [dm6]	T	G	1.574e^-4	0.848	INTERGENIC
2R	27406	2R_27406_SNP [dm3] 2R_4139901_SNP [dm6]	G	T	1.576e^-4	0.848	INTERGENIC
3R	11251055	3R_11251055_SNP [dm3] 3R_15425333_SNP [dm6]	G	A	1.576e^-4	0.848	INTRON CG6118	TF binding site mE1_TFBS_cad
2L	9620840	2L_9620840_SNP [dm3] 2L_9620840_SNP [dm6]	G	A	1.578e^-4	0.848	INTRON GlcAT-S
2R	17991446	2R_17991446_SNP [dm3] 2R_22103941_SNP [dm6]	G	T	1.580e^-4	0.848	SPLICE_SITE_REGION CG6613 SYNONYMOUS_CODING CG6613
3R	8647837	3R_8647837_SNP [dm3] 3R_12822115_SNP [dm6]	C	T	1.581e^-4	0.848	INTERGENIC
2R	7739921	2R_7739921_INS [dm3] 2R_11852416_INS [dm6]	T	TT	1.585e^-4	0.848	UPSTREAM Mtor DOWNSTREAM Sln INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	5714077	2L_5714077_SNP [dm3] 2L_5714077_SNP [dm6]	G	T	1.589e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
3R	27081715	3R_27081715_SNP [dm3] 3R_31255993_SNP [dm6]	G	A	1.591e^-4	0.848	INTRON spn-F	TF binding site mE1_TFBS_cad
3R	11140117	3R_11140117_SNP [dm3] 3R_15314395_SNP [dm6]	C	T	1.591e^-4	0.848	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6732701	2L_6732701_SNP [dm3] 2L_6732701_SNP [dm6]	A	T	1.598e^-4	0.848	UTR_3_PRIME Liprin-alpha UPSTREAM TTLL3B
X	5118240	X_5118240_SNP [dm3] X_5224207_SNP [dm6]	A	G	1.609e^-4	0.848	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2783085	2L_2783085_SNP [dm3] 2L_2783085_SNP [dm6]	G	A	1.613e^-4	0.848	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
2L	5968847	2L_5968847_SNP [dm3] 2L_5968847_SNP [dm6]	C	T	1.614e^-4	0.848	SYNONYMOUS_CODING Ucp4C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5714045	2L_5714045_SNP [dm3] 2L_5714045_SNP [dm6]	C	T	1.616e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
2L	5189433	2L_5189433_SNP [dm3] 2L_5189433_SNP [dm6]	C	T	1.619e^-4	0.848	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11423706	3R_11423706_SNP [dm3] 3R_15597984_SNP [dm6]	C	G	1.626e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15819383	2R_15819383_SNP [dm3] 2R_19931878_SNP [dm6]	A	C	1.633e^-4	0.848	INTERGENIC
2R	11796652	2R_11796652_SNP [dm3] 2R_15909147_SNP [dm6]	C	G	1.636e^-4	0.848	INTRON sli
3L	16661433	3L_16661433_SNP [dm3] 3L_16668333_SNP [dm6]	C	T	1.640e^-4	0.848	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	21066280	X_21066280_SNP [dm3] X_21195253_SNP [dm6]	G	A	1.640e^-4	0.848	DOWNSTREAM CG14579 INTERGENIC
3L	14797072	3L_14797072_SNP [dm3] 3L_14803972_SNP [dm6]	G	T	1.653e^-4	0.848	UPSTREAM gnu INTERGENIC
2L	6036545	2L_6036545_SNP [dm3] 2L_6036545_SNP [dm6]	G	A	1.653e^-4	0.848	SYNONYMOUS_CODING mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18507990	2R_18507990_SNP [dm3] 2R_22620485_SNP [dm6]	T	A	1.654e^-4	0.848	UTR_5_PRIME CG33143
X	10861646	X_10861646_SNP [dm3] X_10967613_SNP [dm6]	C	T	1.661e^-4	0.848	UPSTREAM C901 DOWNSTREAM CG42339 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10983412	3R_10983412_SNP [dm3] 3R_15157690_SNP [dm6]	A	G	1.663e^-4	0.848	INTRON Gyc88E
3L	6450542	3L_6450542_SNP [dm3] 3L_6457442_SNP [dm6]	C	A	1.663e^-4	0.848	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16245295	3R_16245295_SNP [dm3] 3R_20419573_SNP [dm6]	A	G	1.668e^-4	0.848	INTRON Gfrl
2L	5232769	2L_5232769_SNP [dm3] 2L_5232769_SNP [dm6]	T	C	1.669e^-4	0.848	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13364291	3R_13364291_SNP [dm3] 3R_17538569_SNP [dm6]	C	A	1.669e^-4	0.848	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
3L	9688343	3L_9688343_SNP [dm3] 3L_9695243_SNP [dm6]	A	G	1.671e^-4	0.848	UTR_5_PRIME CG6767 UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8601183	X_8601183_SNP [dm3] X_8707150_SNP [dm6]	C	G	1.673e^-4	0.848	UPSTREAM CR44508 DOWNSTREAM CR44507 INTERGENIC
3R	13362068	3R_13362068_SNP [dm3] 3R_17536346_SNP [dm6]	T	C	1.682e^-4	0.848	SYNONYMOUS_CODING P5cr-2 DOWNSTREAM l_3_07882	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18017828	2L_18017828_SNP [dm3] 2L_18017828_SNP [dm6]	T	G	1.682e^-4	0.848	INTRON rdo
2L	5714103	2L_5714103_SNP [dm3] 2L_5714103_SNP [dm6]	G	T	1.686e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
3R	7302894	3R_7302894_SNP [dm3] 3R_11477172_SNP [dm6]	C	T	1.688e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	3499440	2L_3499440_SNP [dm3] 2L_3499440_SNP [dm6]	T	G	1.689e^-4	0.848	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14441047	3L_14441047_SNP [dm3] 3L_14447947_SNP [dm6]	A	C	1.690e^-4	0.848	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10491232	3L_10491232_SNP [dm3] 3L_10498132_SNP [dm6]	T	A	1.692e^-4	0.848	INTRON A2bp1
2L	7517895	2L_7517895_SNP [dm3] 2L_7517895_SNP [dm6]	C	T	1.715e^-4	0.848	INTRON RapGAP1	TF binding site mE1_TFBS_chinmo
3L	24340044	3L_24340044_SNP [dm3] 3L_24346944_SNP [dm6]	G	A	1.715e^-4	0.848	INTRON nvd
2R	17683830	2R_17683830_SNP [dm3] 2R_21796325_SNP [dm6]	T	C	1.716e^-4	0.848	UPSTREAM CG34204 INTERGENIC
X	14807864	X_14807864_SNP [dm3] X_14913831_SNP [dm6]	C	G	1.718e^-4	0.848	UPSTREAM CG12398 INTRON Flo2
X	14808128	X_14808128_SNP [dm3] X_14914095_SNP [dm6]	G	A	1.718e^-4	0.848	UPSTREAM CG12398 INTRON Flo2
3L	9688095	3L_9688095_SNP [dm3] 3L_9694995_SNP [dm6]	C	A	1.727e^-4	0.848	UPSTREAM CR45121 & 1 other INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6350855	X_6350855_SNP [dm3] X_6456822_SNP [dm6]	T	C	1.727e^-4	0.848	INTRON CG42340
2L	20494788	2L_20494788_SNP [dm3] 2L_20494788_SNP [dm6]	C	A	1.730e^-4	0.848	UPSTREAM CG34007 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17829603	3R_17829603_SNP [dm3] 3R_22003881_SNP [dm6]	A	C	1.731e^-4	0.848	INTRON Eip93F	TF binding site mE1_TFBS_cad
3R	11423704	3R_11423704_SNP [dm3] 3R_15597982_SNP [dm6]	G	T	1.732e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16758867	3L_16758867_SNP [dm3] 3L_16765767_SNP [dm6]	T	C	1.743e^-4	0.848	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6293721	2L_6293721_DEL [dm3] 2L_6293721_DEL [dm6]	TAAAAGCTAACATATGACTA...	T	1.745e^-4	0.848	INTRON Ddr
3L	4241824	3L_4241824_SNP [dm3] 3L_4241824_SNP [dm6]	T	C	1.789e^-4	0.848	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12619410	2L_12619410_SNP [dm3] 2L_12619410_SNP [dm6]	A	T	1.794e^-4	0.848	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	8601192	X_8601192_SNP [dm3] X_8707159_SNP [dm6]	C	T	1.796e^-4	0.848	UPSTREAM CR44508 DOWNSTREAM CR44507 INTERGENIC
2L	7679121	2L_7679121_SNP [dm3] 2L_7679121_SNP [dm6]	A	G	1.796e^-4	0.848	INTRON Myo28B1
2R	16435992	2R_16435992_SNP [dm3] 2R_20548487_SNP [dm6]	T	A	1.804e^-4	0.848	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	2005249	2R_2005249_SNP [dm3] 2R_6117744_SNP [dm6]	C	G	1.806e^-4	0.848	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5376878	2L_5376878_SNP [dm3] 2L_5376878_SNP [dm6]	G	T	1.818e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12249555	2L_12249555_SNP [dm3] 2L_12249555_SNP [dm6]	A	G	1.820e^-4	0.848	INTRON aret
3R	10994559	3R_10994559_SNP [dm3] 3R_15168837_SNP [dm6]	A	G	1.821e^-4	0.848	INTRON Gyc88E
2L	7566764	2L_7566764_SNP [dm3] 2L_7566764_SNP [dm6]	C	A	1.823e^-4	0.848	INTRON RapGAP1
3L	16185360	3L_16185360_SNP [dm3] 3L_16192260_SNP [dm6]	C	T	1.828e^-4	0.848	INTERGENIC
2L	18425707	2L_18425707_SNP [dm3] 2L_18425707_SNP [dm6]	T	G	1.828e^-4	0.848	INTERGENIC
3R	5328531	3R_5328531_SNP [dm3] 3R_9502809_SNP [dm6]	T	C	1.828e^-4	0.848	UPSTREAM RhoL INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14552660	3L_14552660_SNP [dm3] 3L_14559560_SNP [dm6]	A	T	1.837e^-4	0.848	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8739183	3L_8739183_SNP [dm3] 3L_8746083_SNP [dm6]	G	A	1.837e^-4	0.848	UPSTREAM Prm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	1195551	2R_1195551_SNP [dm3] 2R_5308046_SNP [dm6]	A	G	1.837e^-4	0.848	INTRON sxc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	4154779	3L_4154779_SNP [dm3] 3L_4154779_SNP [dm6]	T	A	1.849e^-4	0.848	INTRON nab
2R	7050082	2R_7050082_DEL [dm3] 2R_11162577_DEL [dm6]	CC	C	1.849e^-4	0.848	INTRON shn & 1 other
3L	19239661	3L_19239661_SNP [dm3] 3L_19246561_SNP [dm6]	G	T	1.854e^-4	0.848	INTERGENIC
2L	11350655	2L_11350655_DEL [dm3] 2L_11350655_DEL [dm6]	TAGT	T	1.860e^-4	0.848	INTERGENIC	regulatory region REDfly_CRMs
2R	6507050	2R_6507050_SNP [dm3] 2R_10619545_SNP [dm6]	G	A	1.870e^-4	0.848	INTRON CG11883
2L	7317189	2L_7317189_SNP [dm3] 2L_7317189_SNP [dm6]	C	T	1.872e^-4	0.848	DOWNSTREAM wg INTERGENIC
2L	4302896	2L_4302896_SNP [dm3] 2L_4302896_SNP [dm6]	G	A	1.876e^-4	0.848	INTRON tutl
2R	17991566	2R_17991566_SNP [dm3] 2R_22104061_SNP [dm6]	G	A	1.884e^-4	0.848	INTRON CG6613	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9146449	2R_9146449_SNP [dm3] 2R_13258944_SNP [dm6]	G	T	1.894e^-4	0.848	DOWNSTREAM CG10799 INTERGENIC
2R	12698879	2R_12698879_SNP [dm3] 2R_16811374_SNP [dm6]	C	T	1.896e^-4	0.848	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
2L	16012035	2L_16012035_SNP [dm3] 2L_16012035_SNP [dm6]	A	T	1.902e^-4	0.848	INTRON beat-Ic
2L	5377782	2L_5377782_SNP [dm3] 2L_5377782_SNP [dm6]	A	G	1.903e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5834769	3R_5834769_DEL [dm3] 3R_10009047_DEL [dm6]	AAC	A	1.919e^-4	0.848	INTRON Mical
3L	19548498	3L_19548498_SNP [dm3] 3L_19555398_SNP [dm6]	A	G	1.921e^-4	0.848	DOWNSTREAM CR44677 & 1 other INTERGENIC
2R	6681215	2R_6681215_INS [dm3] 2R_10793710_INS [dm6]	T	TG	1.925e^-4	0.848	DOWNSTREAM mthl13 INTRON CG33144
2R	9151857	2R_9151857_SNP [dm3] 2R_13264352_SNP [dm6]	T	C	1.928e^-4	0.848	DOWNSTREAM CG42319 INTRON CG42319
3L	9686217	3L_9686217_SNP [dm3] 3L_9693117_SNP [dm6]	T	C	1.943e^-4	0.848	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	19154533	2R_19154533_DEL [dm3] 2R_23267010_DEL [dm6]	CTCC	C	1.944e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12447484	2L_12447484_SNP [dm3] 2L_12447484_SNP [dm6]	A	T	1.950e^-4	0.848	UPSTREAM Oatp33Eb INTRON CG5421
2L	9468412	2L_9468412_SNP [dm3] 2L_9468412_SNP [dm6]	G	T	1.953e^-4	0.848	INTERGENIC
3L	5223546	3L_5223546_SNP [dm3] 3L_5230446_SNP [dm6]	G	A	1.962e^-4	0.848	INTRON shep
3L	10403083	3L_10403083_SNP [dm3] 3L_10409983_SNP [dm6]	G	T	1.966e^-4	0.848	DOWNSTREAM CR44543 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	17183899	X_17183899_SNP [dm3] X_17289866_SNP [dm6]	T	G	1.968e^-4	0.848	INTRON CG5445 & 1 other
2L	1721103	2L_1721103_SNP [dm3] 2L_1721103_SNP [dm6]	T	G	1.979e^-4	0.848	INTRON Rim2
2L	6541683	2L_6541683_SNP [dm3] 2L_6541683_SNP [dm6]	G	A	1.990e^-4	0.848	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	1090751	3L_1090751_SNP [dm3] 3L_1090751_SNP [dm6]	A	C	1.993e^-4	0.848	INTRON bab1	regulatory region REDfly_CRMs
2R	16435987	2R_16435987_SNP [dm3] 2R_20548482_SNP [dm6]	G	T	2.002e^-4	0.848	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
X	11242078	X_11242078_SNP [dm3] X_11348045_SNP [dm6]	T	G	2.005e^-4	0.848	UPSTREAM CG11756 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2L	12346173	2L_12346173_SNP [dm3] 2L_12346173_SNP [dm6]	T	C	2.011e^-4	0.848	INTRON bru-2
3L	505300	3L_505300_SNP [dm3] 3L_505300_SNP [dm6]	G	C	2.016e^-4	0.848	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc
3L	8709393	3L_8709393_SNP [dm3] 3L_8716293_SNP [dm6]	A	G	2.019e^-4	0.848	INTERGENIC
2L	4774630	2L_4774630_SNP [dm3] 2L_4774630_SNP [dm6]	C	A	2.023e^-4	0.848	INTRON CG15630
2R	14663523	2R_14663523_SNP [dm3] 2R_18776018_SNP [dm6]	G	A	2.026e^-4	0.848	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6035579	2L_6035579_SNP [dm3] 2L_6035579_SNP [dm6]	G	A	2.027e^-4	0.848	SYNONYMOUS_CODING mtm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	18084044	2L_18084044_SNP [dm3] 2L_18084044_SNP [dm6]	A	G	2.030e^-4	0.848	UPSTREAM CG31741 DOWNSTREAM ninaD INTERGENIC
2L	16002182	2L_16002182_SNP [dm3] 2L_16002182_SNP [dm6]	A	T	2.032e^-4	0.848	DOWNSTREAM CG34167 INTRON beat-Ic & 1 other
3L	1488047	3L_1488047_SNP [dm3] 3L_1488047_SNP [dm6]	A	G	2.032e^-4	0.848	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8842445	2L_8842445_SNP [dm3] 2L_8842445_SNP [dm6]	C	A	2.033e^-4	0.848	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	9011950	3L_9011950_SNP [dm3] 3L_9018850_SNP [dm6]	C	T	2.037e^-4	0.848	SYNONYMOUS_CODING Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8709176	3L_8709176_SNP [dm3] 3L_8716076_SNP [dm6]	T	C	2.038e^-4	0.848	INTERGENIC
2R	9589671	2R_9589671_SNP [dm3] 2R_13702166_SNP [dm6]	G	A	2.043e^-4	0.848	INTRON fas
3L	10621155	3L_10621155_SNP [dm3] 3L_10628055_SNP [dm6]	T	C	2.045e^-4	0.848	SYNONYMOUS_CODING CG14151 DOWNSTREAM CG34238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12981626	X_12981626_SNP [dm3] X_13087593_SNP [dm6]	G	T	2.047e^-4	0.848	INTRON hep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2736102	2R_2736102_SNP [dm3] 2R_6848597_SNP [dm6]	G	A	2.047e^-4	0.848	INTERGENIC
X	11323140	X_11323140_SNP [dm3] X_11429107_SNP [dm6]	C	T	2.054e^-4	0.848	SYNONYMOUS_CODING Gs2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4241872	3L_4241872_SNP [dm3] 3L_4241872_SNP [dm6]	T	A	2.061e^-4	0.848	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10915789	3R_10915789_SNP [dm3] 3R_15090067_SNP [dm6]	A	C	2.082e^-4	0.848	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15514223	3R_15514223_DEL [dm3] 3R_19688501_DEL [dm6]	AA	A	2.087e^-4	0.848	INTRON Naam	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12217389	2R_12217389_SNP [dm3] 2R_16329884_SNP [dm6]	G	A	2.087e^-4	0.848	SYNONYMOUS_CODING Vha44 INTRON Vha44	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1815738	3L_1815738_SNP [dm3] 3L_1815738_SNP [dm6]	T	C	2.096e^-4	0.848	INTRON GV1
3R	9723303	3R_9723303_SNP [dm3] 3R_13897581_SNP [dm6]	C	T	2.109e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13362192	3R_13362192_SNP [dm3] 3R_17536470_SNP [dm6]	C	T	2.113e^-4	0.848	SYNONYMOUS_CODING P5cr-2 DOWNSTREAM l_3_07882	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1475265	3L_1475265_DEL [dm3] 3L_1475265_DEL [dm6]	AA	A	2.138e^-4	0.848	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
3R	22921988	3R_22921988_SNP [dm3] 3R_27096266_SNP [dm6]	G	A	2.144e^-4	0.848	NON_SYNONYMOUS_CODING eater DOWNSTREAM CG14259
2L	7537742	2L_7537742_SNP [dm3] 2L_7537742_SNP [dm6]	A	C	2.145e^-4	0.848	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22919526	3R_22919526_SNP [dm3] 3R_27093804_SNP [dm6]	T	G	2.146e^-4	0.848	UPSTREAM CG14259 INTRON CG14258
3R	20814502	3R_20814502_SNP [dm3] 3R_24988780_SNP [dm6]	T	A	2.147e^-4	0.848	INTRON tnc
3L	1087706	3L_1087706_SNP [dm3] 3L_1087706_SNP [dm6]	T	C	2.157e^-4	0.848	INTRON bab1
3L	22871270	3L_22871270_SNP [dm3] 3L_22878170_SNP [dm6]	G	A	2.160e^-4	0.848	START_GAINED Chro UTR_5_PRIME Chro UPSTREAM Ssl1 INTRON Chro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14184325	2R_14184325_INS [dm3] 2R_18296820_INS [dm6]	A	ATC	2.175e^-4	0.848	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
3R	15056898	3R_15056898_SNP [dm3] 3R_19231176_SNP [dm6]	C	T	2.179e^-4	0.848	SYNONYMOUS_CODING unc79 DOWNSTREAM CG3773	TF binding site mE1_TFBS_chinmo
2R	2738245	2R_2738245_SNP [dm3] 2R_6850740_SNP [dm6]	C	A	2.187e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1503310	3L_1503310_SNP [dm3] 3L_1503310_SNP [dm6]	C	G	2.188e^-4	0.848	UTR_3_PRIME cue UPSTREAM pUf68 INTRON Psa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6537262	3R_6537262_SNP [dm3] 3R_10711540_SNP [dm6]	T	C	2.190e^-4	0.848	UPSTREAM CG14689 INTERGENIC
2L	10699382	2L_10699382_SNP [dm3] 2L_10699382_SNP [dm6]	A	G	2.192e^-4	0.848	DOWNSTREAM Lip1 INTERGENIC
X	10287623	X_10287623_SNP [dm3] X_10393590_SNP [dm6]	A	C	2.195e^-4	0.848	INTRON flw
2L	19836414	2L_19836414_SNP [dm3] 2L_19836414_SNP [dm6]	A	G	2.200e^-4	0.848	INTRON sick	TF binding site mE1_TFBS_cad
X	12349667	X_12349667_SNP [dm3] X_12455634_SNP [dm6]	A	T	2.207e^-4	0.848	UTR_3_PRIME CG15927 UPSTREAM CR45615 DOWNSTREAM CG15731 & 1 other
3R	15302351	3R_15302351_SNP [dm3] 3R_19476629_SNP [dm6]	A	G	2.208e^-4	0.848	UPSTREAM Dys INTRON Dys
X	902760	X_902760_SNP [dm3] X_1008727_SNP [dm6]	T	A	2.213e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18614283	2R_18614283_SNP [dm3] 2R_22726778_SNP [dm6]	A	G	2.222e^-4	0.848	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4007325	3L_4007325_SNP [dm3] 3L_4007325_SNP [dm6]	C	T	2.224e^-4	0.848	DOWNSTREAM CG14985 INTERGENIC
2R	2408392	2R_2408392_SNP [dm3] 2R_6520887_SNP [dm6]	C	T	2.224e^-4	0.848	INTRON jing
2R	11398553	2R_11398553_INS [dm3] 2R_15511048_INS [dm6]	A	AGAACTAA	2.228e^-4	0.848	UPSTREAM GalNAc-T1 INTERGENIC
2L	5714069	2L_5714069_INS [dm3] 2L_5714069_INS [dm6]	T	TTATTTT	2.229e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
X	8160705	X_8160705_SNP [dm3] X_8266672_SNP [dm6]	C	T	2.232e^-4	0.848	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5195254	2L_5195254_SNP [dm3] 2L_5195254_SNP [dm6]	T	C	2.234e^-4	0.848	SYNONYMOUS_CODING Msp300 UPSTREAM snmRNA:128	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15059925	3R_15059925_SNP [dm3] 3R_19234203_SNP [dm6]	C	G	2.236e^-4	0.848	SYNONYMOUS_CODING unc79 INTRON unc79
X	18357731	X_18357731_DEL [dm3] X_18463698_DEL [dm6]	CG	C	2.242e^-4	0.848	DOWNSTREAM CR43842 INTRON CG32547	TF binding site mE1_TFBS_inv
2R	7401399	2R_7401399_SNP [dm3] 2R_11513894_SNP [dm6]	G	A	2.253e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16257493	3L_16257493_SNP [dm3] 3L_16264393_SNP [dm6]	A	T	2.254e^-4	0.848	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	10861332	X_10861332_SNP [dm3] X_10967299_SNP [dm6]	G	A	2.259e^-4	0.848	UPSTREAM C901 DOWNSTREAM CG42339 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15819432	2R_15819432_DEL [dm3] 2R_19931927_DEL [dm6]	TTACAA	T	2.277e^-4	0.848	INTERGENIC
2R	15819443	2R_15819443_DEL [dm3] 2R_19931938_DEL [dm6]	TGTTGTCATATTTA...	T	2.277e^-4	0.848	INTERGENIC
3R	18117835	3R_18117835_SNP [dm3] 3R_22292113_SNP [dm6]	G	A	2.279e^-4	0.848	UPSTREAM mir-1010 INTRON SKIP
2L	8842438	2L_8842438_SNP [dm3] 2L_8842438_SNP [dm6]	A	G	2.312e^-4	0.848	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	3008200	3L_3008200_SNP [dm3] 3L_3008200_SNP [dm6]	A	C	2.318e^-4	0.848	INTRON FMRFaR
2R	10302689	2R_10302689_SNP [dm3] 2R_14415184_SNP [dm6]	T	G	2.330e^-4	0.848	INTERGENIC
3R	19177404	3R_19177404_SNP [dm3] 3R_23351682_SNP [dm6]	G	A	2.334e^-4	0.848	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
3R	18147589	3R_18147589_SNP [dm3] 3R_22321867_SNP [dm6]	T	C	2.338e^-4	0.848	INTRON CG34377
3R	21890060	3R_21890060_SNP [dm3] 3R_26064338_SNP [dm6]	G	T	2.339e^-4	0.848	INTERGENIC
2R	9892596	2R_9892596_SNP [dm3] 2R_14005091_SNP [dm6]	G	T	2.342e^-4	0.848	DOWNSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11398568	2R_11398568_SNP [dm3] 2R_15511063_SNP [dm6]	G	A	2.349e^-4	0.848	UPSTREAM GalNAc-T1 INTERGENIC
2L	5301324	2L_5301324_SNP [dm3] 2L_5301324_SNP [dm6]	C	T	2.362e^-4	0.848	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	18117230	2L_18117230_SNP [dm3] 2L_18117230_SNP [dm6]	A	C	2.365e^-4	0.848	INTERGENIC
3R	26580191	3R_26580191_SNP [dm3] 3R_30754469_SNP [dm6]	T	A	2.376e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11948996	2R_11948996_SNP [dm3] 2R_16061491_SNP [dm6]	T	G	2.377e^-4	0.848	DOWNSTREAM CG8405 INTERGENIC
2R	8334007	2R_8334007_SNP [dm3] 2R_12446502_SNP [dm6]	A	C	2.377e^-4	0.848	INTRON Dyb	transposable element FlyBase
2L	16026823	2L_16026823_SNP [dm3] 2L_16026823_SNP [dm6]	C	G	2.378e^-4	0.848	INTRON beat-Ic
2L	12617183	2L_12617183_SNP [dm3] 2L_12617183_SNP [dm6]	A	G	2.380e^-4	0.848	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2509255	3R_2509255_INS [dm3] 3R_6683533_INS [dm6]	C	CGC	2.382e^-4	0.848	UPSTREAM Edg84A INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11559313	X_11559313_INS [dm3] X_11665280_INS [dm6]	A	AATACTGTTAATA...	2.387e^-4	0.848	INTRON Ptp10D
3L	4241841	3L_4241841_SNP [dm3] 3L_4241841_SNP [dm6]	T	A	2.392e^-4	0.848	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9468612	2L_9468612_SNP [dm3] 2L_9468612_SNP [dm6]	C	T	2.405e^-4	0.848	INTERGENIC
2L	8468267	2L_8468267_SNP [dm3] 2L_8468267_SNP [dm6]	G	A	2.421e^-4	0.848	INTRON d	TF binding site mE1_TFBS_Kr
3R	11008848	3R_11008848_SNP [dm3] 3R_15183126_SNP [dm6]	A	T	2.422e^-4	0.848	INTRON Gyc88E
3L	1488046	3L_1488046_SNP [dm3] 3L_1488046_SNP [dm6]	G	A	2.429e^-4	0.848	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	12619360	2L_12619360_SNP [dm3] 2L_12619360_SNP [dm6]	C	T	2.436e^-4	0.848	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	25337325	3R_25337325_INS [dm3] 3R_29511603_INS [dm6]	G	GG	2.439e^-4	0.848	INTERGENIC
2L	3687251	2L_3687251_SNP [dm3] 2L_3687251_SNP [dm6]	A	T	2.439e^-4	0.848	INTRON CG34340
3R	7365766	3R_7365766_SNP [dm3] 3R_11540044_SNP [dm6]	A	G	2.451e^-4	0.848	UTR_5_PRIME dpr4
2R	16436057	2R_16436057_SNP [dm3] 2R_20548552_SNP [dm6]	C	T	2.465e^-4	0.848	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	15819471	2R_15819471_SNP [dm3] 2R_19931966_SNP [dm6]	G	T	2.469e^-4	0.848	INTERGENIC
2L	4301141	2L_4301141_SNP [dm3] 2L_4301141_SNP [dm6]	G	T	2.471e^-4	0.848	INTRON tutl	TF binding site mE1_TFBS_Trl
2R	6681218	2R_6681218_DEL [dm3] 2R_10793713_DEL [dm6]	TA	A	2.478e^-4	0.848	DOWNSTREAM mthl13 INTRON CG33144
3L	5881498	3L_5881498_SNP [dm3] 3L_5888398_SNP [dm6]	C	T	2.480e^-4	0.848	INTERGENIC
3R	27073002	3R_27073002_SNP [dm3] 3R_31247280_SNP [dm6]	G	A	2.480e^-4	0.848	INTRON qless
2L	9551308	2L_9551308_SNP [dm3] 2L_9551308_SNP [dm6]	G	A	2.485e^-4	0.848	UPSTREAM jp INTRON jp
3L	5881483	3L_5881483_SNP [dm3] 3L_5888383_SNP [dm6]	T	C	2.487e^-4	0.848	INTERGENIC
2L	15412286	2L_15412286_SNP [dm3] 2L_15412286_SNP [dm6]	A	C	2.488e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16027205	2L_16027205_SNP [dm3] 2L_16027205_SNP [dm6]	A	T	2.489e^-4	0.848	INTRON beat-Ic
2L	7315580	2L_7315580_SNP [dm3] 2L_7315580_SNP [dm6]	G	A	2.490e^-4	0.848	UTR_3_PRIME wg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	18737385	2R_18737385_SNP [dm3] 2R_22849862_SNP [dm6]	T	C	2.490e^-4	0.848	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
2L	16059081	2L_16059081_SNP [dm3] 2L_16059081_SNP [dm6]	G	T	2.493e^-4	0.848	INTRON beat-Ia
2L	13932028	2L_13932028_SNP [dm3] 2L_13932028_SNP [dm6]	T	G	2.498e^-4	0.848	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	17819651	3R_17819651_SNP [dm3] 3R_21993929_SNP [dm6]	G	A	2.502e^-4	0.848	INTRON Eip93F
3R	23318971	3R_23318971_SNP [dm3] 3R_27493249_SNP [dm6]	A	C	2.509e^-4	0.848	INTERGENIC
X	3178374	X_3178374_SNP [dm3] X_3284341_SNP [dm6]	T	G	2.510e^-4	0.848	INTRON dnc
2R	4855624	2R_4855624_SNP [dm3] 2R_8968119_SNP [dm6]	G	A	2.540e^-4	0.848	INTRON CG8216	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18734274	2R_18734274_SNP [dm3] 2R_22846751_SNP [dm6]	G	A	2.546e^-4	0.848	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19764495	2L_19764495_SNP [dm3] 2L_19764495_SNP [dm6]	C	A	2.552e^-4	0.848	UPSTREAM fbp INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7030888	3L_7030888_SNP [dm3] 3L_7037788_SNP [dm6]	C	T	2.556e^-4	0.848	INTRON Mp
3L	1035032	3L_1035032_SNP [dm3] 3L_1035032_SNP [dm6]	A	T	2.558e^-4	0.848	UPSTREAM CG9205 & 1 other INTRON CG9205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	7004503	2L_7004503_SNP [dm3] 2L_7004503_SNP [dm6]	A	C	2.563e^-4	0.848	INTRON uif
2R	6390112	2R_6390112_SNP [dm3] 2R_10502607_SNP [dm6]	C	T	2.565e^-4	0.848	INTRON lola
2L	14166349	2L_14166349_SNP [dm3] 2L_14166349_SNP [dm6]	G	T	2.574e^-4	0.848	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
3R	17915653	3R_17915653_SNP [dm3] 3R_22089931_SNP [dm6]	T	A	2.574e^-4	0.848	INTRON CG5778
2L	10122900	2L_10122900_SNP [dm3] 2L_10122900_SNP [dm6]	T	C	2.587e^-4	0.848	UPSTREAM CG13135 INTRON CG44153 & 1 other
2L	10684715	2L_10684715_SNP [dm3] 2L_10684715_SNP [dm6]	G	A	2.590e^-4	0.848	UPSTREAM CG7299 INTERGENIC
2L	9063441	2L_9063441_SNP [dm3] 2L_9063441_SNP [dm6]	T	A	2.593e^-4	0.848	INTRON CG31708	TF binding site mE1_TFBS_inv
2R	12410383	2R_12410383_SNP [dm3] 2R_16522878_SNP [dm6]	C	T	2.594e^-4	0.848	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
2L	1208160	2L_1208160_SNP [dm3] 2L_1208160_SNP [dm6]	G	A	2.596e^-4	0.848	INTERGENIC
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	2.601e^-4	0.848	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3R	5013961	3R_5013961_SNP [dm3] 3R_9188239_SNP [dm6]	C	T	2.601e^-4	0.848	INTRON pum	TF binding site mE1_TFBS_inv
3L	15621195	3L_15621195_SNP [dm3] 3L_15628095_SNP [dm6]	G	A	2.604e^-4	0.848	INTRON comm3
2L	3686805	2L_3686805_SNP [dm3] 2L_3686805_SNP [dm6]	A	G	2.612e^-4	0.848	INTRON CG34340
2R	9971598	2R_9971598_SNP [dm3] 2R_14084093_SNP [dm6]	A	T	2.615e^-4	0.848	INTRON Prosap
2L	7525487	2L_7525487_SNP [dm3] 2L_7525487_SNP [dm6]	G	T	2.618e^-4	0.848	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9011890	2L_9011890_INS [dm3] 2L_9011890_INS [dm6]	T	TAT	2.621e^-4	0.848	UPSTREAM CG13102 DOWNSTREAM CG9568 & 1 other INTERGENIC
X	4772617	X_4772617_SNP [dm3] X_4878584_SNP [dm6]	A	T	2.627e^-4	0.848	INTRON CG42594
2L	12622548	2L_12622548_SNP [dm3] 2L_12622548_SNP [dm6]	A	G	2.627e^-4	0.848	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20931074	X_20931074_SNP [dm3] X_21060047_SNP [dm6]	T	A	2.628e^-4	0.848	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	6813204	X_6813204_SNP [dm3] X_6919171_SNP [dm6]	A	G	2.633e^-4	0.848	INTRON CG14431
2R	2809940	2R_2809940_SNP [dm3] 2R_6922435_SNP [dm6]	T	A	2.640e^-4	0.848	UTR_3_PRIME CG30158 UPSTREAM CG3358
3L	2118330	3L_2118330_SNP [dm3] 3L_2118330_SNP [dm6]	A	T	2.647e^-4	0.848	INTRON zormin
3R	17693844	3R_17693844_SNP [dm3] 3R_21868122_SNP [dm6]	C	G	2.648e^-4	0.848	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
2R	20433617	2R_20433617_SNP [dm3] 2R_24546094_SNP [dm6]	A	T	2.658e^-4	0.848	INTRON CG4622 & 1 other
3L	14552633	3L_14552633_SNP [dm3] 3L_14559533_SNP [dm6]	G	A	2.660e^-4	0.848	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC
2R	9425444	2R_9425444_SNP [dm3] 2R_13537939_SNP [dm6]	G	A	2.666e^-4	0.848	SYNONYMOUS_CODING CG6145	TF binding site mE1_TFBS_cad
3L	15631887	3L_15631887_SNP [dm3] 3L_15638787_SNP [dm6]	G	A	2.673e^-4	0.848	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9063443	2L_9063443_SNP [dm3] 2L_9063443_SNP [dm6]	T	G	2.681e^-4	0.848	INTRON CG31708	TF binding site mE1_TFBS_inv
X	8600608	X_8600608_SNP [dm3] X_8706575_SNP [dm6]	C	T	2.687e^-4	0.848	DOWNSTREAM CR44507 INTERGENIC
2L	9011925	2L_9011925_SNP [dm3] 2L_9011925_SNP [dm6]	A	G	2.694e^-4	0.848	UPSTREAM CG13102 DOWNSTREAM CG9568 & 1 other INTERGENIC
3R	26580193	3R_26580193_SNP [dm3] 3R_30754471_SNP [dm6]	C	T	2.699e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	6550433	3R_6550433_SNP [dm3] 3R_10724711_SNP [dm6]	T	G	2.712e^-4	0.848	INTERGENIC
3L	9685263	3L_9685263_SNP [dm3] 3L_9692163_SNP [dm6]	A	T	2.715e^-4	0.848	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	12835729	2L_12835729_SNP [dm3] 2L_12835729_SNP [dm6]	T	G	2.718e^-4	0.848	INTERGENIC
2R	12602388	2R_12602388_SNP [dm3] 2R_16714883_SNP [dm6]	G	T	2.722e^-4	0.848	INTRON CG30463
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	2.723e^-4	0.848	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9590725	2L_9590725_SNP [dm3] 2L_9590725_SNP [dm6]	T	C	2.727e^-4	0.848	INTRON CG3841	regulatory region REDfly_CRMs
2L	5714087	2L_5714087_SNP [dm3] 2L_5714087_SNP [dm6]	C	T	2.736e^-4	0.848	DOWNSTREAM CG7236 INTERGENIC
2R	9953844	2R_9953844_SNP [dm3] 2R_14066339_SNP [dm6]	A	G	2.754e^-4	0.848	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5105737	2L_5105737_SNP [dm3] 2L_5105737_SNP [dm6]	A	C	2.755e^-4	0.848	INTRON Msp300
3R	3802600	3R_3802600_INS [dm3] 3R_7976878_INS [dm6]	T	TATGT	2.758e^-4	0.848	INTRON CD98hc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	6813222	X_6813222_SNP [dm3] X_6919189_SNP [dm6]	T	A	2.765e^-4	0.848	INTRON CG14431
2R	19120441	2R_19120441_SNP [dm3] 2R_23232918_SNP [dm6]	C	T	2.768e^-4	0.848	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19748050	2R_19748050_SNP [dm3] 2R_23860527_SNP [dm6]	G	T	2.776e^-4	0.848	INTRON TBPH	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11110336	3L_11110336_SNP [dm3] 3L_11117236_SNP [dm6]	T	A	2.776e^-4	0.848	INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	20433612	2R_20433612_SNP [dm3] 2R_24546089_SNP [dm6]	C	G	2.789e^-4	0.848	INTRON CG4622 & 1 other
2L	6379710	2L_6379710_SNP [dm3] 2L_6379710_SNP [dm6]	C	T	2.790e^-4	0.848	INTRON CG42368
3R	13769289	3R_13769289_SNP [dm3] 3R_17943567_SNP [dm6]	C	T	2.802e^-4	0.848	UPSTREAM cpo INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	20394660	2L_20394660_SNP [dm3] 2L_20394660_SNP [dm6]	C	T	2.804e^-4	0.848	INTRON CG10947
2L	5007169	2L_5007169_SNP [dm3] 2L_5007169_SNP [dm6]	A	C	2.809e^-4	0.848	UPSTREAM Rtnl1 INTRON Rtnl1
3L	612023	3L_612023_SNP [dm3] 3L_612023_SNP [dm6]	T	A	2.819e^-4	0.848	INTERGENIC
2R	18291147	2R_18291147_INS [dm3] 2R_22403642_INS [dm6]	T	TTT	2.823e^-4	0.848	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15290648	X_15290648_SNP [dm3] X_15396615_SNP [dm6]	A	G	2.823e^-4	0.848	SYNONYMOUS_CODING Cngl
3L	10906479	3L_10906479_SNP [dm3] 3L_10913379_SNP [dm6]	A	G	2.823e^-4	0.848	INTERGENIC
2L	4774853	2L_4774853_SNP [dm3] 2L_4774853_SNP [dm6]	G	A	2.840e^-4	0.848	INTRON CG15630
2L	5966802	2L_5966802_SNP [dm3] 2L_5966802_SNP [dm6]	G	A	2.841e^-4	0.848	NON_SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14308648	3R_14308648_SNP [dm3] 3R_18482926_SNP [dm6]	T	C	2.850e^-4	0.848	INTRON fru
2L	2758664	2L_2758664_SNP [dm3] 2L_2758664_SNP [dm6]	C	T	2.856e^-4	0.848	SYNONYMOUS_CODING CG9960 UTR_3_PRIME Snapin UPSTREAM CR44772 DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3L	507785	3L_507785_SNP [dm3] 3L_507785_SNP [dm6]	T	C	2.859e^-4	0.848	INTRON klar
3R	10881862	3R_10881862_SNP [dm3] 3R_15056140_SNP [dm6]	C	T	2.864e^-4	0.848	UTR_3_PRIME dpr9 DOWNSTREAM dpr9
3R	23243499	3R_23243499_SNP [dm3] 3R_27417777_SNP [dm6]	T	A	2.873e^-4	0.848	INTRON side
3R	16646903	3R_16646903_SNP [dm3] 3R_20821181_SNP [dm6]	T	C	2.875e^-4	0.848	SYNONYMOUS_CODING CG17271 UPSTREAM RpS20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	5321900	3R_5321900_SNP [dm3] 3R_9496178_SNP [dm6]	T	C	2.876e^-4	0.848	SYNONYMOUS_CODING CG8147 DOWNSTREAM RhoL	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	9685337	3L_9685337_SNP [dm3] 3L_9692237_SNP [dm6]	A	C	2.887e^-4	0.848	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2276305	3L_2276305_SNP [dm3] 3L_2276305_SNP [dm6]	A	G	2.889e^-4	0.848	UPSTREAM yellow-g2 INTERGENIC
3R	19181153	3R_19181153_SNP [dm3] 3R_23355431_SNP [dm6]	C	T	2.890e^-4	0.848	SYNONYMOUS_CODING ATPsyn-Cf6 UPSTREAM Sec13 DOWNSTREAM DNApol-epsilon	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	11197871	3L_11197871_SNP [dm3] 3L_11204771_SNP [dm6]	A	T	2.892e^-4	0.848	INTRON Plod
3L	10723995	3L_10723995_SNP [dm3] 3L_10730895_SNP [dm6]	G	C	2.894e^-4	0.848	INTERGENIC
2R	9153900	2R_9153900_SNP [dm3] 2R_13266395_SNP [dm6]	T	C	2.894e^-4	0.848	DOWNSTREAM CG42319 INTERGENIC
3L	2489487	3L_2489487_SNP [dm3] 3L_2489487_SNP [dm6]	G	C	2.898e^-4	0.848	UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1717463	2L_1717463_SNP [dm3] 2L_1717463_SNP [dm6]	A	C	2.908e^-4	0.848	INTRON Rim2
2R	20255265	2R_20255265_SNP [dm3] 2R_24367742_SNP [dm6]	C	A	2.912e^-4	0.848	INTRON bs & 1 other	TF binding site mE1_TFBS_inv
X	10902627	X_10902627_SNP [dm3] X_11008594_SNP [dm6]	A	G	2.914e^-4	0.848	INTRON CG42339
X	13264879	X_13264879_SNP [dm3] X_13370846_SNP [dm6]	C	T	2.918e^-4	0.848	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3L	11011915	3L_11011915_SNP [dm3] 3L_11018815_SNP [dm6]	C	T	2.924e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	19523174	3L_19523174_SNP [dm3] 3L_19530074_SNP [dm6]	T	C	2.930e^-4	0.848	INTERGENIC
X	14138053	X_14138053_SNP [dm3] X_14244020_SNP [dm6]	C	T	2.930e^-4	0.848	SYNONYMOUS_CODING CG32599	TF binding site mE1_TFBS_chinmo
2R	12269302	2R_12269302_SNP [dm3] 2R_16381797_SNP [dm6]	A	G	2.931e^-4	0.848	UTR_3_PRIME CG43187
3L	20691887	3L_20691887_SNP [dm3] 3L_20698787_SNP [dm6]	G	A	2.934e^-4	0.848	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	13449367	X_13449367_SNP [dm3] X_13555334_SNP [dm6]	A	T	2.936e^-4	0.848	UTR_5_PRIME CG11816
2L	1475411	2L_1475411_SNP [dm3] 2L_1475411_SNP [dm6]	C	T	2.941e^-4	0.848	INTERGENIC
3L	13313472	3L_13313472_SNP [dm3] 3L_13320372_SNP [dm6]	A	C	2.942e^-4	0.848	INTERGENIC
2R	1810691	2R_1810691_SNP [dm3] 2R_5923186_SNP [dm6]	T	C	2.944e^-4	0.848	INTRON CG43366	transposable element FlyBase
3L	13168687	3L_13168687_SNP [dm3] 3L_13175587_SNP [dm6]	T	C	2.948e^-4	0.848	SYNONYMOUS_CODING snky
2L	12346204	2L_12346204_SNP [dm3] 2L_12346204_SNP [dm6]	G	T	2.964e^-4	0.848	INTRON bru-2
2L	6525673	2L_6525673_SNP [dm3] 2L_6525673_SNP [dm6]	C	A	2.968e^-4	0.848	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_sens
3L	8814114	3L_8814114_SNP [dm3] 3L_8821014_SNP [dm6]	G	C	2.975e^-4	0.848	INTERGENIC
3R	6267436	3R_6267436_SNP [dm3] 3R_10441714_SNP [dm6]	A	C	2.977e^-4	0.848	INTERGENIC
2L	2029607	2L_2029607_SNP [dm3] 2L_2029607_SNP [dm6]	G	T	2.980e^-4	0.848	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6813212	X_6813212_INS [dm3] X_6919179_INS [dm6]	C	CACCCCTCCCC...	2.983e^-4	0.848	INTRON CG14431
2R	15365526	2R_15365526_SNP [dm3] 2R_19478021_SNP [dm6]	G	A	3.004e^-4	0.848	INTRON par-1
3L	15738003	3L_15738003_SNP [dm3] 3L_15744903_SNP [dm6]	C	G	3.008e^-4	0.848	INTERGENIC
3R	14106759	3R_14106759_SNP [dm3] 3R_18281037_SNP [dm6]	C	T	3.011e^-4	0.848	INTRON eIF-1A	TF binding site mE1_TFBS_sens
2R	19112778	2R_19112778_SNP [dm3] 2R_23225255_SNP [dm6]	T	A	3.018e^-4	0.848	INTERGENIC
2L	6571333	2L_6571333_SNP [dm3] 2L_6571333_SNP [dm6]	G	A	3.019e^-4	0.848	UTR_3_PRIME CG11319 DOWNSTREAM CG11319 INTRON CG11319
2L	16305346	2L_16305346_SNP [dm3] 2L_16305346_SNP [dm6]	A	G	3.023e^-4	0.848	DOWNSTREAM CG5861 INTRON c_2_M
2L	12619599	2L_12619599_SNP [dm3] 2L_12619599_SNP [dm6]	C	G	3.029e^-4	0.848	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_cad
2L	7822573	2L_7822573_SNP [dm3] 2L_7822573_SNP [dm6]	C	G	3.030e^-4	0.848	INTRON CG7115
3R	25953260	3R_25953260_SNP [dm3] 3R_30127538_SNP [dm6]	T	C	3.032e^-4	0.848	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7578199	2L_7578199_DEL [dm3] 2L_7578199_DEL [dm6]	GAA	T	3.040e^-4	0.848	INTRON RapGAP1
3L	6382160	3L_6382160_SNP [dm3] 3L_6389060_SNP [dm6]	G	A	3.049e^-4	0.848	INTERGENIC
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	3.059e^-4	0.848	INTERGENIC
2R	15819463	2R_15819463_SNP [dm3] 2R_19931958_SNP [dm6]	G	A	3.065e^-4	0.848	INTERGENIC
2L	16026802	2L_16026802_SNP [dm3] 2L_16026802_SNP [dm6]	A	C	3.073e^-4	0.848	INTRON beat-Ic
X	15297879	X_15297879_SNP [dm3] X_15403846_SNP [dm6]	A	T	3.082e^-4	0.848	INTRON Cngl
2R	19358330	2R_19358330_SNP [dm3] 2R_23470807_SNP [dm6]	G	A	3.087e^-4	0.848	SYNONYMOUS_CODING Or59b INTRON CG43795
2L	10122899	2L_10122899_SNP [dm3] 2L_10122899_SNP [dm6]	G	A	3.100e^-4	0.848	UPSTREAM CG13135 INTRON CG44153 & 1 other
3L	11114754	3L_11114754_SNP [dm3] 3L_11121654_SNP [dm6]	C	T	3.102e^-4	0.848	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26899496	3R_26899496_SNP [dm3] 3R_31073774_SNP [dm6]	A	G	3.110e^-4	0.848	INTRON Sox100B
3L	16815060	3L_16815060_SNP [dm3] 3L_16821960_SNP [dm6]	A	G	3.112e^-4	0.848	INTRON CG13024
2L	9590829	2L_9590829_SNP [dm3] 2L_9590829_SNP [dm6]	C	G	3.114e^-4	0.848	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
X	18372981	X_18372981_SNP [dm3] X_18478948_SNP [dm6]	G	A	3.115e^-4	0.848	INTRON CG32547
2L	7580171	2L_7580171_SNP [dm3] 2L_7580171_SNP [dm6]	T	G	3.117e^-4	0.848	INTERGENIC
2L	15988644	2L_15988644_SNP [dm3] 2L_15988644_SNP [dm6]	T	A	3.124e^-4	0.848	INTERGENIC
2L	4993025	2L_4993025_SNP [dm3] 2L_4993025_SNP [dm6]	T	G	3.125e^-4	0.848	UTR_3_PRIME Rtnl1 DOWNSTREAM CG34126 & 1 other
2L	5194866	2L_5194866_SNP [dm3] 2L_5194866_SNP [dm6]	G	A	3.126e^-4	0.848	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22722768	3R_22722768_SNP [dm3] 3R_26897046_SNP [dm6]	G	T	3.129e^-4	0.848	INTRON T48	regulatory region REDfly_CRMs
2R	20435834	2R_20435834_SNP [dm3] 2R_24548311_SNP [dm6]	C	A	3.133e^-4	0.848	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	495526	3L_495526_SNP [dm3] 3L_495526_SNP [dm6]	G	A	3.134e^-4	0.848	INTRON klar
2L	20384413	2L_20384413_SNP [dm3] 2L_20384413_SNP [dm6]	T	A	3.136e^-4	0.848	DOWNSTREAM CG10947 INTERGENIC
2L	16526396	2L_16526396_SNP [dm3] 2L_16526396_SNP [dm6]	A	G	3.142e^-4	0.848	INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5397991	3L_5397991_SNP [dm3] 3L_5404891_SNP [dm6]	T	A	3.148e^-4	0.848	INTERGENIC
2L	10939598	2L_10939598_SNP [dm3] 2L_10939598_SNP [dm6]	C	T	3.150e^-4	0.848	INTRON dpr2
X	21133483	X_21133483_SNP [dm3] X_21262456_SNP [dm6]	C	A	3.165e^-4	0.848	INTRON CG32521
2L	16002255	2L_16002255_SNP [dm3] 2L_16002255_SNP [dm6]	T	C	3.170e^-4	0.848	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825	TF binding site mE1_TFBS_sbb
3R	15059640	3R_15059640_SNP [dm3] 3R_19233918_SNP [dm6]	G	A	3.174e^-4	0.848	SYNONYMOUS_CODING unc79
3R	18870059	3R_18870059_SNP [dm3] 3R_23044337_SNP [dm6]	A	T	3.177e^-4	0.848	SYNONYMOUS_CODING CG13837 DOWNSTREAM CG17121	TF binding site BDTNP1_TFBS_twi
2L	4364969	2L_4364969_SNP [dm3] 2L_4364969_SNP [dm6]	A	C	3.177e^-4	0.848	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	6551007	2L_6551007_SNP [dm3] 2L_6551007_SNP [dm6]	A	T	3.190e^-4	0.848	UPSTREAM CR44776 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9620751	2L_9620751_SNP [dm3] 2L_9620751_SNP [dm6]	G	T	3.194e^-4	0.848	INTRON GlcAT-S
2R	2005798	2R_2005798_SNP [dm3] 2R_6118293_SNP [dm6]	A	G	3.194e^-4	0.848	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4218732	3L_4218732_SNP [dm3] 3L_4218732_SNP [dm6]	A	T	3.199e^-4	0.848	INTRON CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12636870	2L_12636870_SNP [dm3] 2L_12636870_SNP [dm6]	G	A	3.200e^-4	0.848	INTRON Ref2
X	10940623	X_10940623_SNP [dm3] X_11046590_SNP [dm6]	G	A	3.206e^-4	0.848	INTRON CG11160
3L	19236311	3L_19236311_SNP [dm3] 3L_19243211_SNP [dm6]	T	A	3.221e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6353447	2L_6353447_SNP [dm3] 2L_6353447_SNP [dm6]	G	A	3.225e^-4	0.848	SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad
3R	24200347	3R_24200347_SNP [dm3] 3R_28374625_SNP [dm6]	C	T	3.225e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10720388	3L_10720388_SNP [dm3] 3L_10727288_SNP [dm6]	G	A	3.231e^-4	0.848	INTERGENIC
3L	18759542	3L_18759542_SNP [dm3] 3L_18766442_SNP [dm6]	A	T	3.231e^-4	0.848	UPSTREAM ftz-f1 INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4933967	X_4933967_SNP [dm3] X_5039934_SNP [dm6]	C	A	3.241e^-4	0.848	INTRON CR44833	regulatory region REDfly_CRMs
2R	15819476	2R_15819476_SNP [dm3] 2R_19931971_SNP [dm6]	T	A	3.242e^-4	0.848	INTERGENIC
3R	18852029	3R_18852029_SNP [dm3] 3R_23026307_SNP [dm6]	C	A	3.258e^-4	0.848	NON_SYNONYMOUS_CODING lmd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6620345	2L_6620345_SNP [dm3] 2L_6620345_SNP [dm6]	T	C	3.264e^-4	0.848	DOWNSTREAM CR44913 INTRON CG11320
3L	9693583	3L_9693583_SNP [dm3] 3L_9700483_SNP [dm6]	C	T	3.266e^-4	0.848	DOWNSTREAM CG6761 & 1 other INTERGENIC
3L	1488140	3L_1488140_SNP [dm3] 3L_1488140_SNP [dm6]	C	T	3.276e^-4	0.848	SYNONYMOUS_CODING stet UPSTREAM CR43701 & 1 other	TF binding site mE1_TFBS_cad
3R	18845417	3R_18845417_SNP [dm3] 3R_23019695_SNP [dm6]	A	C	3.285e^-4	0.848	INTERGENIC
2L	8842442	2L_8842442_SNP [dm3] 2L_8842442_SNP [dm6]	T	C	3.289e^-4	0.848	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	17447765	2L_17447765_SNP [dm3] 2L_17447765_SNP [dm6]	A	C	3.290e^-4	0.848	INTRON dl
3L	9022136	3L_9022136_SNP [dm3] 3L_9029036_SNP [dm6]	G	C	3.291e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20434601	2R_20434601_SNP [dm3] 2R_24547078_SNP [dm6]	A	T	3.292e^-4	0.848	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6231072	2L_6231072_SNP [dm3] 2L_6231072_SNP [dm6]	C	T	3.294e^-4	0.848	UPSTREAM CR44823 INTERGENIC
2L	1437262	2L_1437262_SNP [dm3] 2L_1437262_SNP [dm6]	T	C	3.300e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5193396	2L_5193396_SNP [dm3] 2L_5193396_SNP [dm6]	G	A	3.308e^-4	0.848	SYNONYMOUS_CODING Msp300 UPSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9203876	3L_9203876_SNP [dm3] 3L_9210776_SNP [dm6]	C	A	3.310e^-4	0.848	INTERGENIC
X	15190151	X_15190151_SNP [dm3] X_15296118_SNP [dm6]	A	G	3.314e^-4	0.848	SYNONYMOUS_CODING CG5877
X	15141294	X_15141294_SNP [dm3] X_15247261_SNP [dm6]	G	A	3.320e^-4	0.848	INTERGENIC
2L	12346124	2L_12346124_SNP [dm3] 2L_12346124_SNP [dm6]	A	T	3.321e^-4	0.848	INTRON bru-2
3L	2915008	3L_2915008_DEL [dm3] 3L_2915008_DEL [dm6]	CTTAACCACACGTA...	C	3.321e^-4	0.848	DOWNSTREAM CG9970 INTRON Shab
2R	18737409	2R_18737409_SNP [dm3] 2R_22849886_SNP [dm6]	C	T	3.323e^-4	0.848	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
X	8774249	X_8774249_SNP [dm3] X_8880216_SNP [dm6]	G	T	3.325e^-4	0.848	INTRON Moe	TF binding site mE1_TFBS_inv
3L	21142043	3L_21142043_SNP [dm3] 3L_21148943_SNP [dm6]	C	G	3.331e^-4	0.848	INTRON Ac78C
3L	6450546	3L_6450546_INS [dm3] 3L_6457446_INS [dm6]	A	ATACGAA	3.341e^-4	0.848	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13668491	3R_13668491_SNP [dm3] 3R_17842769_SNP [dm6]	C	T	3.344e^-4	0.848	INTRON tinc
2L	14166286	2L_14166286_SNP [dm3] 2L_14166286_SNP [dm6]	T	C	3.348e^-4	0.848	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
2R	15184838	2R_15184838_SNP [dm3] 2R_19297333_SNP [dm6]	G	C	3.352e^-4	0.848	UPSTREAM Tab2 INTRON Tab2
3R	16108610	3R_16108610_SNP [dm3] 3R_20282888_SNP [dm6]	A	T	3.359e^-4	0.848	INTRON cic	TF binding site mE1_TFBS_inv
X	14808147	X_14808147_SNP [dm3] X_14914114_SNP [dm6]	A	C	3.361e^-4	0.848	UPSTREAM CG12398 INTRON Flo2
3L	6013834	3L_6013834_SNP [dm3] 3L_6020734_SNP [dm6]	G	A	3.361e^-4	0.848	INTRON PVRAP
3L	936637	3L_936637_SNP [dm3] 3L_936637_SNP [dm6]	G	T	3.365e^-4	0.848	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19810554	2L_19810554_SNP [dm3] 2L_19810554_SNP [dm6]	C	T	3.371e^-4	0.848	UPSTREAM snRNA:U4:38AB INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	9248623	2R_9248623_SNP [dm3] 2R_13361118_SNP [dm6]	A	G	3.375e^-4	0.848	DOWNSTREAM CR45312 INTERGENIC
2R	18508004	2R_18508004_SNP [dm3] 2R_22620499_SNP [dm6]	C	A	3.380e^-4	0.848	UTR_5_PRIME CG33143
2R	7494135	2R_7494135_SNP [dm3] 2R_11606630_SNP [dm6]	C	T	3.387e^-4	0.848	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18087197	2L_18087197_SNP [dm3] 2L_18087197_SNP [dm6]	G	C	3.390e^-4	0.848	DOWNSTREAM CG31741 INTERGENIC
2L	12346146	2L_12346146_SNP [dm3] 2L_12346146_SNP [dm6]	C	G	3.398e^-4	0.848	INTRON bru-2
3R	7943081	3R_7943081_SNP [dm3] 3R_12117359_SNP [dm6]	T	C	3.398e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14671566	2L_14671566_SNP [dm3] 2L_14671566_SNP [dm6]	G	A	3.407e^-4	0.848	INTRON osp
2R	18663760	2R_18663760_DEL [dm3] 2R_22776255_DEL [dm6]	ACACAACA	A	3.417e^-4	0.848	INTRON CG42260
3R	17823107	3R_17823107_SNP [dm3] 3R_21997385_SNP [dm6]	C	A	3.424e^-4	0.848	INTRON Eip93F
3R	17819609	3R_17819609_SNP [dm3] 3R_21993887_SNP [dm6]	T	C	3.429e^-4	0.848	INTRON Eip93F
3R	5031726	3R_5031726_SNP [dm3] 3R_9206004_SNP [dm6]	G	A	3.440e^-4	0.848	INTRON pum
2L	19794234	2L_19794234_SNP [dm3] 2L_19794234_SNP [dm6]	G	T	3.460e^-4	0.848	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
2L	9631971	2L_9631971_SNP [dm3] 2L_9631971_SNP [dm6]	T	C	3.469e^-4	0.848	INTERGENIC
X	17239145	X_17239145_SNP [dm3] X_17345112_SNP [dm6]	C	T	3.472e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16002180	2L_16002180_SNP [dm3] 2L_16002180_SNP [dm6]	T	G	3.478e^-4	0.848	DOWNSTREAM CG34167 INTRON beat-Ic & 1 other
3L	15322451	3L_15322451_SNP [dm3] 3L_15329351_SNP [dm6]	C	A	3.478e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15089526	X_15089526_SNP [dm3] X_15195493_SNP [dm6]	C	A	3.488e^-4	0.848	INTERGENIC
3L	11013447	3L_11013447_SNP [dm3] 3L_11020347_SNP [dm6]	T	C	3.489e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12719866	3L_12719866_SNP [dm3] 3L_12726766_SNP [dm6]	C	A	3.489e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16824305	3R_16824305_INS [dm3] 3R_20998583_INS [dm6]	A	ACCCTATAT	3.490e^-4	0.848	INTRON Calx
2L	14565840	2L_14565840_SNP [dm3] 2L_14565840_SNP [dm6]	A	G	3.495e^-4	0.848	INTERGENIC
X	6813223	X_6813223_SNP [dm3] X_6919190_SNP [dm6]	C	T	3.499e^-4	0.848	INTRON CG14431
3L	7920699	3L_7920699_SNP [dm3] 3L_7927599_SNP [dm6]	T	C	3.499e^-4	0.848	INTRON syd	TF binding site mE1_TFBS_cad
2L	20391880	2L_20391880_SNP [dm3] 2L_20391880_SNP [dm6]	T	A	3.499e^-4	0.848	INTRON CG10947
X	13508010	X_13508010_SNP [dm3] X_13613977_SNP [dm6]	C	A	3.505e^-4	0.848	UTR_3_PRIME tth DOWNSTREAM BthD
3L	11197837	3L_11197837_SNP [dm3] 3L_11204737_SNP [dm6]	A	G	3.511e^-4	0.848	INTRON Plod
3L	19823800	3L_19823800_DEL [dm3] 3L_19830700_DEL [dm6]	TTCGAAAAT	T	3.527e^-4	0.848	DOWNSTREAM trc & 1 other INTERGENIC
2L	13112155	2L_13112155_SNP [dm3] 2L_13112155_SNP [dm6]	A	G	3.548e^-4	0.848	INTERGENIC
2R	12801989	2R_12801989_SNP [dm3] 2R_16914484_SNP [dm6]	A	C	3.550e^-4	0.848	INTERGENIC
X	11558268	X_11558268_SNP [dm3] X_11664235_SNP [dm6]	T	G	3.553e^-4	0.848	INTRON Ptp10D
3L	1691818	3L_1691818_SNP [dm3] 3L_1691818_SNP [dm6]	G	A	3.558e^-4	0.848	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15162259	2R_15162259_SNP [dm3] 2R_19274754_SNP [dm6]	G	T	3.563e^-4	0.848	UPSTREAM rib INTRON rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15302349	3R_15302349_SNP [dm3] 3R_19476627_SNP [dm6]	T	A	3.571e^-4	0.848	UPSTREAM Dys INTRON Dys
2R	20441980	2R_20441980_SNP [dm3] 2R_24554457_SNP [dm6]	C	T	3.576e^-4	0.848	INTRON CG4622 & 1 other
X	10861428	X_10861428_SNP [dm3] X_10967395_SNP [dm6]	C	G	3.576e^-4	0.848	UPSTREAM C901 DOWNSTREAM CG42339 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5130096	3L_5130096_SNP [dm3] 3L_5136996_SNP [dm6]	A	G	3.577e^-4	0.848	SYNONYMOUS_CODING CG4611 UPSTREAM CG10674 DOWNSTREAM CR45160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20144384	2L_20144384_SNP [dm3] 2L_20144384_SNP [dm6]	T	C	3.591e^-4	0.848	INTERGENIC
X	4068756	X_4068756_SNP [dm3] X_4174723_SNP [dm6]	C	T	3.599e^-4	0.848	INTRON Fas2
3R	5322538	3R_5322538_SNP [dm3] 3R_9496816_SNP [dm6]	C	A	3.601e^-4	0.848	DOWNSTREAM RhoL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	5211726	3L_5211726_SNP [dm3] 3L_5218626_SNP [dm6]	C	T	3.602e^-4	0.848	INTRON shep
3R	4137893	3R_4137893_SNP [dm3] 3R_8312171_SNP [dm6]	G	A	3.605e^-4	0.848	UPSTREAM CG11698 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9685225	3L_9685225_SNP [dm3] 3L_9692125_SNP [dm6]	G	C	3.606e^-4	0.848	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	8806062	2L_8806062_SNP [dm3] 2L_8806062_SNP [dm6]	C	T	3.610e^-4	0.848	INTERGENIC
3L	12586021	3L_12586021_SNP [dm3] 3L_12592921_SNP [dm6]	T	A	3.617e^-4	0.848	INTRON ara	TF binding site mE1_TFBS_HSA
3R	18881633	3R_18881633_SNP [dm3] 3R_23055911_SNP [dm6]	G	A	3.617e^-4	0.848	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22111981	2L_22111981_INS [dm3] 2L_22111981_INS [dm6]	C	CATAATGTC	3.627e^-4	0.848	INTERGENIC	transposable element FlyBase
3L	5957715	3L_5957715_SNP [dm3] 3L_5964615_SNP [dm6]	A	G	3.628e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6537093	2L_6537093_SNP [dm3] 2L_6537093_SNP [dm6]	G	A	3.635e^-4	0.848	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12346200	2L_12346200_SNP [dm3] 2L_12346200_SNP [dm6]	C	A	3.645e^-4	0.848	INTRON bru-2
2L	18028189	2L_18028189_SNP [dm3] 2L_18028189_SNP [dm6]	A	T	3.651e^-4	0.848	INTRON rdo
2L	16386289	2L_16386289_SNP [dm3] 2L_16386289_SNP [dm6]	G	A	3.668e^-4	0.848	INTERGENIC
2R	11949033	2R_11949033_DEL [dm3] 2R_16061528_DEL [dm6]	GA	G	3.672e^-4	0.848	DOWNSTREAM CG8405 INTERGENIC
2L	15738582	2L_15738582_DEL [dm3] 2L_15738582_DEL [dm6]	TCC	G	3.675e^-4	0.848	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	686958	2L_686958_SNP [dm3] 2L_686958_SNP [dm6]	G	A	3.679e^-4	0.848	INTRON ds
2L	20376373	2L_20376373_SNP [dm3] 2L_20376373_SNP [dm6]	T	A	3.683e^-4	0.848	DOWNSTREAM CG16798 INTERGENIC
3R	13355590	3R_13355590_SNP [dm3] 3R_17529868_SNP [dm6]	C	A	3.684e^-4	0.848	INTERGENIC
3L	505705	3L_505705_SNP [dm3] 3L_505705_SNP [dm6]	T	C	3.694e^-4	0.848	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	16616582	2R_16616582_SNP [dm3] 2R_20729077_SNP [dm6]	T	A	3.694e^-4	0.848	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6275678	2L_6275678_SNP [dm3] 2L_6275678_SNP [dm6]	T	G	3.699e^-4	0.848	INTRON Ddr
2L	6738192	2L_6738192_SNP [dm3] 2L_6738192_SNP [dm6]	C	A	3.703e^-4	0.848	INTRON TTLL3A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4576763	2L_4576763_SNP [dm3] 2L_4576763_SNP [dm6]	C	T	3.703e^-4	0.848	DOWNSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	12230632	2L_12230632_SNP [dm3] 2L_12230632_SNP [dm6]	A	C	3.703e^-4	0.848	INTRON aret
2L	10227387	2L_10227387_SNP [dm3] 2L_10227387_SNP [dm6]	T	G	3.704e^-4	0.848	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12619290	2L_12619290_SNP [dm3] 2L_12619290_SNP [dm6]	T	C	3.705e^-4	0.848	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	4948822	3R_4948822_SNP [dm3] 3R_9123100_SNP [dm6]	A	G	3.714e^-4	0.848	INTRON pum
3L	13906045	3L_13906045_SNP [dm3] 3L_13912945_SNP [dm6]	A	G	3.717e^-4	0.848	INTRON Rgl
3R	11945903	3R_11945903_SNP [dm3] 3R_16120181_SNP [dm6]	C	G	3.717e^-4	0.848	INTRON Sb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15496598	2L_15496598_SNP [dm3] 2L_15496598_SNP [dm6]	G	C	3.718e^-4	0.848	INTERGENIC
3L	10906489	3L_10906489_SNP [dm3] 3L_10913389_SNP [dm6]	G	T	3.719e^-4	0.848	INTERGENIC
2R	72527	2R_72527_SNP [dm3] 2R_4185022_SNP [dm6]	G	C	3.721e^-4	0.848	INTERGENIC
3R	10883866	3R_10883866_SNP [dm3] 3R_15058144_SNP [dm6]	T	C	3.734e^-4	0.848	INTRON dpr9
3L	5379739	3L_5379739_SNP [dm3] 3L_5386639_SNP [dm6]	G	C	3.743e^-4	0.848	INTERGENIC
2L	14166466	2L_14166466_SNP [dm3] 2L_14166466_SNP [dm6]	C	T	3.744e^-4	0.848	SYNONYMOUS_CODING CG43333
2R	2726885	2R_2726885_SNP [dm3] 2R_6839380_SNP [dm6]	A	G	3.748e^-4	0.848	UPSTREAM CG9445 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12477202	2L_12477202_DEL [dm3] 2L_12477202_DEL [dm6]	TAGATAAGAATGTAT...	T	3.759e^-4	0.848	INTRON bun
2L	6552625	2L_6552625_SNP [dm3] 2L_6552625_SNP [dm6]	G	T	3.760e^-4	0.848	DOWNSTREAM CR44776 INTERGENIC
2L	3895305	2L_3895305_SNP [dm3] 2L_3895305_SNP [dm6]	A	G	3.766e^-4	0.848	INTRON capu
2R	10756340	2R_10756340_SNP [dm3] 2R_14868835_SNP [dm6]	G	A	3.771e^-4	0.848	SYNONYMOUS_CODING Inr-a DOWNSTREAM Inr-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7726848	3R_7726848_SNP [dm3] 3R_11901126_SNP [dm6]	T	A	3.772e^-4	0.848	INTRON Cad87A	TF binding site mE1_TFBS_sens
2R	17424812	2R_17424812_SNP [dm3] 2R_21537307_SNP [dm6]	A	G	3.772e^-4	0.848	SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 DOWNSTREAM CG33226 INTRON Egfr	TF binding site mE1_TFBS_sens
2R	13783091	2R_13783091_SNP [dm3] 2R_17895586_SNP [dm6]	T	A	3.773e^-4	0.848	DOWNSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	6857084	3R_6857084_SNP [dm3] 3R_11031362_SNP [dm6]	A	C	3.781e^-4	0.848	INTRON CG34114
2L	18036806	2L_18036806_SNP [dm3] 2L_18036806_SNP [dm6]	T	A	3.787e^-4	0.848	INTRON rdo
2R	10892723	2R_10892723_SNP [dm3] 2R_15005218_SNP [dm6]	T	A	3.788e^-4	0.848	INTERGENIC
3R	17747302	3R_17747302_SNP [dm3] 3R_21921580_SNP [dm6]	T	C	3.789e^-4	0.848	INTERGENIC
3R	25880120	3R_25880120_SNP [dm3] 3R_30054398_SNP [dm6]	T	A	3.791e^-4	0.848	DOWNSTREAM spn-A INTRON CG7946
3L	3869618	3L_3869618_SNP [dm3] 3L_3869618_SNP [dm6]	A	C	3.796e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	17394896	X_17394896_DEL [dm3] X_17500863_DEL [dm6]	TAT	T	3.797e^-4	0.848	INTRON CG43658
2L	5428953	2L_5428953_SNP [dm3] 2L_5428953_SNP [dm6]	C	G	3.800e^-4	0.848	INTERGENIC
2R	9564336	2R_9564336_SNP [dm3] 2R_13676831_SNP [dm6]	C	G	3.801e^-4	0.848	INTRON fas	TF binding site BDTNP1_TFBS_twi
2R	15368047	2R_15368047_SNP [dm3] 2R_19480542_SNP [dm6]	T	C	3.802e^-4	0.848	INTRON par-1
2L	16521151	2L_16521151_SNP [dm3] 2L_16521151_SNP [dm6]	A	G	3.802e^-4	0.848	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17894	2R_17894_SNP [dm3] 2R_4130389_SNP [dm6]	C	G	3.805e^-4	0.848	UPSTREAM CG17683 INTERGENIC
2R	18608666	2R_18608666_SNP [dm3] 2R_22721161_SNP [dm6]	C	T	3.807e^-4	0.848	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6390106	2R_6390106_DEL [dm3] 2R_10502601_DEL [dm6]	GTG	G	3.810e^-4	0.848	INTRON lola
X	4408620	X_4408620_SNP [dm3] X_4514587_SNP [dm6]	T	A	3.813e^-4	0.848	INTRON CR32773
2L	22404860	2L_22404860_SNP [dm3] 2L_22404860_SNP [dm6]	A	G	3.819e^-4	0.848	INTERGENIC	transposable element FlyBase
2R	10116855	2R_10116855_SNP [dm3] 2R_14229350_SNP [dm6]	A	T	3.825e^-4	0.848	INTRON CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11197918	3L_11197918_SNP [dm3] 3L_11204818_SNP [dm6]	C	A	3.829e^-4	0.848	INTRON Plod
3L	24103693	3L_24103693_SNP [dm3] 3L_24110593_SNP [dm6]	G	A	3.833e^-4	0.848	INTRON Snap25
3L	9107214	3L_9107214_SNP [dm3] 3L_9114114_SNP [dm6]	C	T	3.833e^-4	0.848	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13226705	3L_13226705_SNP [dm3] 3L_13233605_SNP [dm6]	G	T	3.835e^-4	0.848	INTRON caps
3L	7814533	3L_7814533_DEL [dm3] 3L_7821433_DEL [dm6]	AT	A	3.836e^-4	0.848	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10806525	2L_10806525_SNP [dm3] 2L_10806525_SNP [dm6]	G	A	3.842e^-4	0.848	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
X	11559316	X_11559316_SNP [dm3] X_11665283_SNP [dm6]	T	A	3.843e^-4	0.848	INTRON Ptp10D
2L	14642124	2L_14642124_SNP [dm3] 2L_14642124_SNP [dm6]	A	T	3.849e^-4	0.848	INTRON osp
3L	16813255	3L_16813255_SNP [dm3] 3L_16820155_SNP [dm6]	T	A	3.857e^-4	0.848	DOWNSTREAM nudC INTRON CG13024
3R	23433557	3R_23433557_DEL [dm3] 3R_27607835_DEL [dm6]	CC	C	3.857e^-4	0.848	UPSTREAM Tusp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9139185	2R_9139185_SNP [dm3] 2R_13251680_SNP [dm6]	A	T	3.858e^-4	0.848	UTR_5_PRIME CG4712 DOWNSTREAM CG4714
3R	21890064	3R_21890064_SNP [dm3] 3R_26064342_SNP [dm6]	C	T	3.858e^-4	0.848	INTERGENIC
3L	15633560	3L_15633560_SNP [dm3] 3L_15640460_SNP [dm6]	C	G	3.859e^-4	0.848	INTRON comm3	TF binding site mE1_TFBS_hkb
2R	12217386	2R_12217386_SNP [dm3] 2R_16329881_SNP [dm6]	T	C	3.862e^-4	0.848	SYNONYMOUS_CODING Vha44 INTRON Vha44	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19762355	2L_19762355_SNP [dm3] 2L_19762355_SNP [dm6]	C	T	3.865e^-4	0.848	INTRON fbp	TF binding site mE1_TFBS_inv
2R	15819388	2R_15819388_SNP [dm3] 2R_19931883_SNP [dm6]	T	A	3.869e^-4	0.848	INTERGENIC
2L	15737212	2L_15737212_SNP [dm3] 2L_15737212_SNP [dm6]	C	T	3.869e^-4	0.848	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	11056469	X_11056469_SNP [dm3] X_11162436_SNP [dm6]	A	G	3.869e^-4	0.848	SYNONYMOUS_CODING Dlic
3L	838842	3L_838842_SNP [dm3] 3L_838842_SNP [dm6]	G	A	3.869e^-4	0.848	INTRON CG13887	TF binding site mE1_TFBS_inv
2L	7578119	2L_7578119_SNP [dm3] 2L_7578119_SNP [dm6]	C	T	3.873e^-4	0.848	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9139181	2R_9139181_SNP [dm3] 2R_13251676_SNP [dm6]	A	T	3.882e^-4	0.848	UTR_5_PRIME CG4712 DOWNSTREAM CG4714
2L	12346195	2L_12346195_SNP [dm3] 2L_12346195_SNP [dm6]	A	T	3.883e^-4	0.848	INTRON bru-2
3L	10671895	3L_10671895_SNP [dm3] 3L_10678795_SNP [dm6]	G	T	3.884e^-4	0.848	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10869012	3L_10869012_SNP [dm3] 3L_10875912_SNP [dm6]	C	T	3.890e^-4	0.848	UTR_3_PRIME tna DOWNSTREAM CG6418 & 1 other
3L	17492389	3L_17492389_SNP [dm3] 3L_17499289_SNP [dm6]	A	T	3.891e^-4	0.848	INTRON Oatp74D	TF binding site mE1_TFBS_Trl
2L	5419378	2L_5419378_SNP [dm3] 2L_5419378_SNP [dm6]	A	G	3.891e^-4	0.848	INTERGENIC
3R	19884890	3R_19884890_SNP [dm3] 3R_24059168_SNP [dm6]	A	C	3.897e^-4	0.848	SYNONYMOUS_CODING SMC1
3L	9107394	3L_9107394_SNP [dm3] 3L_9114294_SNP [dm6]	T	G	3.898e^-4	0.848	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	18824147	3L_18824147_SNP [dm3] 3L_18831047_SNP [dm6]	A	C	3.898e^-4	0.848	INTRON Indy	TF binding site mE1_TFBS_cad
3L	1574824	3L_1574824_SNP [dm3] 3L_1574824_SNP [dm6]	T	G	3.913e^-4	0.848	DOWNSTREAM CG12004 INTRON CG12004
3R	15302353	3R_15302353_MNP [dm3] 3R_19476631_MNP [dm6]	CATT	ACCC	3.914e^-4	0.848	UPSTREAM Dys INTRON Dys
3R	15302365	3R_15302365_DEL [dm3] 3R_19476643_DEL [dm6]	TA	T	3.914e^-4	0.848	UPSTREAM Dys INTRON Dys
2R	9139164	2R_9139164_INS [dm3] 2R_13251659_INS [dm6]	T	TATAGTGTTTTT...	3.916e^-4	0.848	UTR_5_PRIME CG4712 DOWNSTREAM CG4714
3R	17286924	3R_17286924_SNP [dm3] 3R_21461202_SNP [dm6]	T	G	3.917e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24203963	3R_24203963_SNP [dm3] 3R_28378241_SNP [dm6]	C	G	3.918e^-4	0.848	INTERGENIC
2L	5251692	2L_5251692_DEL [dm3] 2L_5251692_DEL [dm6]	ACAAA	A	3.929e^-4	0.848	INTRON tkv
2L	546391	2L_546391_SNP [dm3] 2L_546391_SNP [dm6]	C	T	3.948e^-4	0.848	SYNONYMOUS_CODING nAChRbeta3 UTR_3_PRIME Ets21C DOWNSTREAM Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10550674	X_10550674_SNP [dm3] X_10656641_SNP [dm6]	T	C	3.948e^-4	0.848	INTRON X11Lbeta
3R	19181056	3R_19181056_SNP [dm3] 3R_23355334_SNP [dm6]	G	A	3.949e^-4	0.848	UTR_3_PRIME ATPsyn-Cf6 UPSTREAM Sec13 DOWNSTREAM DNApol-epsilon	TF binding site mE1_TFBS_HSA
3L	503570	3L_503570_SNP [dm3] 3L_503570_SNP [dm6]	G	A	3.957e^-4	0.848	INTRON klar
2L	3895281	2L_3895281_INS [dm3] 2L_3895281_INS [dm6]	A	AT	3.961e^-4	0.848	INTRON capu
2R	6681150	2R_6681150_SNP [dm3] 2R_10793645_SNP [dm6]	T	A	3.964e^-4	0.848	DOWNSTREAM mthl13 INTRON CG33144
3L	6320367	3L_6320367_SNP [dm3] 3L_6327267_SNP [dm6]	G	A	3.966e^-4	0.848	UPSTREAM Or65c DOWNSTREAM Or65b INTERGENIC
3L	9682204	3L_9682204_SNP [dm3] 3L_9689104_SNP [dm6]	C	A	3.971e^-4	0.848	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26935425	3R_26935425_DEL [dm3] 3R_31109703_DEL [dm6]	TGAAATGT	T	3.974e^-4	0.848	UPSTREAM CG11318 INTERGENIC
2L	16521089	2L_16521089_SNP [dm3] 2L_16521089_SNP [dm6]	C	T	3.980e^-4	0.848	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21919006	X_21919006_SNP [dm3] X_22517170_SNP [dm6]	A	G	3.982e^-4	0.848	INTRON CG17600	transposable element FlyBase
2L	6274712	2L_6274712_SNP [dm3] 2L_6274712_SNP [dm6]	A	G	3.985e^-4	0.848	INTRON Ddr
2R	1577720	2R_1577720_SNP [dm3] 2R_5690215_SNP [dm6]	G	A	3.988e^-4	0.848	INTRON scaf
2L	3837027	2L_3837027_SNP [dm3] 2L_3837027_SNP [dm6]	T	A	3.992e^-4	0.848	UTR_5_PRIME slp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11115085	2L_11115085_SNP [dm3] 2L_11115085_SNP [dm6]	C	T	3.995e^-4	0.848	SYNONYMOUS_CODING Gr32a DOWNSTREAM CG6230	TF binding site mE1_TFBS_cad
2R	14691160	2R_14691160_SNP [dm3] 2R_18803655_SNP [dm6]	T	C	3.995e^-4	0.848	SPLICE_SITE_REGION l_2_08717 UTR_5_PRIME l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	21730746	3L_21730746_SNP [dm3] 3L_21737646_SNP [dm6]	T	C	4.003e^-4	0.848	DOWNSTREAM CG14567 INTERGENIC	TF binding site mE1_TFBS_cad
X	5117274	X_5117274_SNP [dm3] X_5223241_SNP [dm6]	G	A	4.024e^-4	0.848	INTRON CG15465 & 1 other
3L	19688835	3L_19688835_SNP [dm3] 3L_19695735_SNP [dm6]	G	A	4.029e^-4	0.848	UPSTREAM verm INTERGENIC
3L	11221500	3L_11221500_SNP [dm3] 3L_11228400_SNP [dm6]	C	T	4.029e^-4	0.848	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	15302346	3R_15302346_SNP [dm3] 3R_19476624_SNP [dm6]	A	T	4.030e^-4	0.848	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_inv
3R	15302368	3R_15302368_SNP [dm3] 3R_19476646_SNP [dm6]	G	T	4.030e^-4	0.848	UPSTREAM Dys INTRON Dys
2L	6540156	2L_6540156_SNP [dm3] 2L_6540156_SNP [dm6]	C	A	4.035e^-4	0.848	INTRON eya
X	8612484	X_8612484_SNP [dm3] X_8718451_SNP [dm6]	T	G	4.036e^-4	0.848	SYNONYMOUS_CODING l_1_G0020	TF binding site mE1_TFBS_sens
X	8062713	X_8062713_SNP [dm3] X_8168680_SNP [dm6]	T	A	4.036e^-4	0.848	SYNONYMOUS_CODING CG2278	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	15217764	X_15217764_SNP [dm3] X_15323731_SNP [dm6]	C	T	4.039e^-4	0.848	NON_SYNONYMOUS_CODING Top1 INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15819428	2R_15819428_SNP [dm3] 2R_19931923_SNP [dm6]	C	G	4.050e^-4	0.848	INTERGENIC
2R	9502928	2R_9502928_SNP [dm3] 2R_13615423_SNP [dm6]	G	A	4.054e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9011959	2L_9011959_SNP [dm3] 2L_9011959_SNP [dm6]	T	C	4.061e^-4	0.848	UPSTREAM CG13102 DOWNSTREAM CG9568 & 1 other INTERGENIC
2L	723590	2L_723590_SNP [dm3] 2L_723590_SNP [dm6]	C	G	4.061e^-4	0.848	INTERGENIC
X	14808188	X_14808188_SNP [dm3] X_14914155_SNP [dm6]	A	T	4.064e^-4	0.848	UPSTREAM CG12398 INTRON Flo2
X	3178428	X_3178428_SNP [dm3] X_3284395_SNP [dm6]	A	C	4.067e^-4	0.848	INTRON dnc
2R	16616584	2R_16616584_SNP [dm3] 2R_20729079_SNP [dm6]	T	G	4.077e^-4	0.848	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6861308	3R_6861308_SNP [dm3] 3R_11035586_SNP [dm6]	C	A	4.081e^-4	0.848	INTRON CG34114
X	15165997	X_15165997_INS [dm3] X_15271964_INS [dm6]	A	AAGTA	4.100e^-4	0.848	INTRON CG9106
2L	3687225	2L_3687225_SNP [dm3] 2L_3687225_SNP [dm6]	A	T	4.103e^-4	0.848	INTRON CG34340
3L	12322518	3L_12322518_SNP [dm3] 3L_12329418_SNP [dm6]	T	G	4.103e^-4	0.848	UTR_5_PRIME CG32105	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12349664	X_12349664_SNP [dm3] X_12455631_SNP [dm6]	T	C	4.105e^-4	0.848	UTR_3_PRIME CG15927 UPSTREAM CR45615 DOWNSTREAM CG15731 & 1 other
X	11558223	X_11558223_SNP [dm3] X_11664190_SNP [dm6]	G	T	4.105e^-4	0.848	INTRON Ptp10D
2L	20393090	2L_20393090_SNP [dm3] 2L_20393090_SNP [dm6]	C	T	4.106e^-4	0.848	INTRON CG10947
3R	14304681	3R_14304681_SNP [dm3] 3R_18478959_SNP [dm6]	G	C	4.106e^-4	0.848	INTRON fru
2R	9420562	2R_9420562_SNP [dm3] 2R_13533057_SNP [dm6]	A	C	4.112e^-4	0.848	UPSTREAM Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	20773293	3L_20773293_DEL [dm3] 3L_20780193_DEL [dm6]	TTT	T	4.120e^-4	0.848	UTR_3_PRIME Pex14 DOWNSTREAM CG11399
2L	8227309	2L_8227309_SNP [dm3] 2L_8227309_SNP [dm6]	C	A	4.124e^-4	0.848	INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7386931	2R_7386931_DEL [dm3] 2R_11499426_DEL [dm6]	AA	A	4.126e^-4	0.848	INTRON inv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15176060	2R_15176060_SNP [dm3] 2R_19288555_SNP [dm6]	G	A	4.130e^-4	0.848	SYNONYMOUS_CODING CG18606 UPSTREAM CG18607	TF binding site mE1_TFBS_HSA
3R	19721883	3R_19721883_SNP [dm3] 3R_23896161_SNP [dm6]	T	G	4.130e^-4	0.848	INTRON sba
3L	16336750	3L_16336750_SNP [dm3] 3L_16343650_SNP [dm6]	A	T	4.141e^-4	0.848	INTRON CG4998	TF binding site mE1_TFBS_cad
X	14871316	X_14871316_SNP [dm3] X_14977283_SNP [dm6]	G	C	4.154e^-4	0.848	INTRON eag
3R	13355573	3R_13355573_SNP [dm3] 3R_17529851_SNP [dm6]	G	T	4.158e^-4	0.848	INTERGENIC
2R	11948988	2R_11948988_SNP [dm3] 2R_16061483_SNP [dm6]	G	T	4.160e^-4	0.848	DOWNSTREAM CG8405 INTERGENIC
X	16793845	X_16793845_SNP [dm3] X_16899812_SNP [dm6]	A	G	4.162e^-4	0.848	INTERGENIC
2L	555042	2L_555042_SNP [dm3] 2L_555042_SNP [dm6]	G	A	4.171e^-4	0.848	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad
2R	10116847	2R_10116847_SNP [dm3] 2R_14229342_SNP [dm6]	G	A	4.171e^-4	0.848	INTRON CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5419384	2L_5419384_SNP [dm3] 2L_5419384_SNP [dm6]	A	T	4.175e^-4	0.848	INTERGENIC
2R	16521038	2R_16521038_DEL [dm3] 2R_20633533_DEL [dm6]	CC	C	4.178e^-4	0.848	UPSTREAM Rcd6 DOWNSTREAM rig INTERGENIC
2R	2619007	2R_2619007_DEL [dm3] 2R_6731502_DEL [dm6]	AATAC	A	4.181e^-4	0.848	INTRON l_2_01289
X	16793856	X_16793856_SNP [dm3] X_16899823_SNP [dm6]	G	T	4.182e^-4	0.848	INTERGENIC
X	906824	X_906824_SNP [dm3] X_1012791_SNP [dm6]	C	A	4.185e^-4	0.848	UTR_5_PRIME su_w[a]_ DOWNSTREAM CG14631
3L	18754596	3L_18754596_SNP [dm3] 3L_18761496_SNP [dm6]	T	A	4.197e^-4	0.848	INTRON ftz-f1
2R	20438758	2R_20438758_SNP [dm3] 2R_24551235_SNP [dm6]	A	T	4.203e^-4	0.848	INTRON CG4622 & 1 other
2R	10997852	2R_10997852_SNP [dm3] 2R_15110347_SNP [dm6]	T	A	4.203e^-4	0.848	INTERGENIC
X	15263388	X_15263388_SNP [dm3] X_15369355_SNP [dm6]	C	G	4.210e^-4	0.848	INTRON acj6
X	11558041	X_11558041_SNP [dm3] X_11664008_SNP [dm6]	C	T	4.214e^-4	0.848	INTRON Ptp10D
3R	25339720	3R_25339720_SNP [dm3] 3R_29513998_SNP [dm6]	C	T	4.221e^-4	0.848	INTERGENIC
3R	6749459	3R_6749459_SNP [dm3] 3R_10923737_SNP [dm6]	G	A	4.239e^-4	0.848	INTERGENIC
X	10850809	X_10850809_SNP [dm3] X_10956776_SNP [dm6]	T	G	4.245e^-4	0.848	INTRON Myo10A
3L	9635813	3L_9635813_SNP [dm3] 3L_9642713_SNP [dm6]	C	T	4.257e^-4	0.848	SYNONYMOUS_CODING fry DOWNSTREAM CG18180
2L	6030106	2L_6030106_SNP [dm3] 2L_6030106_SNP [dm6]	C	A	4.258e^-4	0.848	INTRON CG9109
2R	16436451	2R_16436451_SNP [dm3] 2R_20548946_SNP [dm6]	A	G	4.262e^-4	0.848	SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	2727993	2R_2727993_SNP [dm3] 2R_6840488_SNP [dm6]	A	C	4.262e^-4	0.848	INTERGENIC
2L	5428934	2L_5428934_SNP [dm3] 2L_5428934_SNP [dm6]	C	T	4.268e^-4	0.848	INTERGENIC
2L	5428961	2L_5428961_SNP [dm3] 2L_5428961_SNP [dm6]	A	T	4.268e^-4	0.848	INTERGENIC
3R	17690509	3R_17690509_SNP [dm3] 3R_21864787_SNP [dm6]	T	G	4.272e^-4	0.848	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16684615	2R_16684615_SNP [dm3] 2R_20797110_SNP [dm6]	T	A	4.281e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23641846	3R_23641846_SNP [dm3] 3R_27816124_SNP [dm6]	A	C	4.282e^-4	0.848	INTRON CG34353
2R	9763191	2R_9763191_SNP [dm3] 2R_13875686_SNP [dm6]	A	G	4.283e^-4	0.848	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	2073327	2L_2073327_SNP [dm3] 2L_2073327_SNP [dm6]	T	A	4.287e^-4	0.848	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	6293717	2L_6293717_SNP [dm3] 2L_6293717_SNP [dm6]	A	T	4.287e^-4	0.848	INTRON Ddr
3L	15574425	3L_15574425_SNP [dm3] 3L_15581325_SNP [dm6]	A	T	4.289e^-4	0.848	UPSTREAM mrn INTRON CG12301	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8267149	2L_8267149_SNP [dm3] 2L_8267149_SNP [dm6]	A	G	4.293e^-4	0.848	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3L	13931870	3L_13931870_SNP [dm3] 3L_13938770_SNP [dm6]	G	C	4.298e^-4	0.848	UPSTREAM CG32137 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16336804	3L_16336804_SNP [dm3] 3L_16343704_SNP [dm6]	G	C	4.300e^-4	0.848	INTRON CG4998	TF binding site mE1_TFBS_cad
X	8608284	X_8608284_SNP [dm3] X_8714251_SNP [dm6]	C	T	4.307e^-4	0.848	UPSTREAM CG1785 & 1 other INTRON CG2004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	1815470	2R_1815470_SNP [dm3] 2R_5927965_SNP [dm6]	T	C	4.310e^-4	0.848	NON_SYNONYMOUS_CODING CG43366
3L	17475014	3L_17475014_SNP [dm3] 3L_17481914_SNP [dm6]	C	G	4.319e^-4	0.848	UTR_5_PRIME CG6333 UPSTREAM CG6333
3R	11405458	3R_11405458_SNP [dm3] 3R_15579736_SNP [dm6]	A	G	4.321e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13264790	X_13264790_SNP [dm3] X_13370757_SNP [dm6]	C	T	4.323e^-4	0.848	UTR_5_PRIME CG1640 UPSTREAM CG1640 DOWNSTREAM dmrt11E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14166309	2L_14166309_SNP [dm3] 2L_14166309_SNP [dm6]	G	A	4.324e^-4	0.848	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
2R	7066624	2R_7066624_SNP [dm3] 2R_11179119_SNP [dm6]	G	A	4.325e^-4	0.848	INTRON shn	TF binding site mE1_TFBS_inv
X	8604493	X_8604493_SNP [dm3] X_8710460_SNP [dm6]	A	T	4.328e^-4	0.848	INTRON Hexo2	TF binding site BDTNP1_TFBS_dl
2L	12619641	2L_12619641_SNP [dm3] 2L_12619641_SNP [dm6]	T	C	4.329e^-4	0.848	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3869623	3L_3869623_INS [dm3] 3L_3869623_INS [dm6]	C	CAAGAAAGTATC...	4.333e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7326203	3L_7326203_SNP [dm3] 3L_7333103_SNP [dm6]	C	T	4.335e^-4	0.848	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other
3L	507545	3L_507545_SNP [dm3] 3L_507545_SNP [dm6]	A	T	4.341e^-4	0.848	INTRON klar
3L	16665714	3L_16665714_SNP [dm3] 3L_16672614_SNP [dm6]	G	A	4.342e^-4	0.848	INTRON zetaCOP
2L	16176442	2L_16176442_SNP [dm3] 2L_16176442_SNP [dm6]	A	G	4.354e^-4	0.848	SYNONYMOUS_CODING Ca-alpha1D
2L	14166226	2L_14166226_SNP [dm3] 2L_14166226_SNP [dm6]	G	T	4.357e^-4	0.848	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
3R	15152652	3R_15152652_SNP [dm3] 3R_19326930_SNP [dm6]	C	A	4.357e^-4	0.848	UPSTREAM Dl DOWNSTREAM mir-997 EXON CR44175	TF binding site BDTNP1_TFBS_dl
X	12864650	X_12864650_SNP [dm3] X_12970617_SNP [dm6]	T	C	4.361e^-4	0.848	UPSTREAM CG15721 DOWNSTREAM Mur11Da EXON CR43636
3L	8995136	3L_8995136_SNP [dm3] 3L_9002036_SNP [dm6]	T	C	4.361e^-4	0.848	SYNONYMOUS_CODING CG5087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20386806	2R_20386806_SNP [dm3] 2R_24499283_SNP [dm6]	A	T	4.366e^-4	0.848	UTR_3_PRIME Ssl DOWNSTREAM Yu	TF binding site mE1_TFBS_chinmo
3L	2276265	3L_2276265_SNP [dm3] 3L_2276265_SNP [dm6]	C	T	4.375e^-4	0.848	UPSTREAM yellow-g2 INTERGENIC
2R	6671853	2R_6671853_SNP [dm3] 2R_10784348_SNP [dm6]	C	A	4.383e^-4	0.848	INTRON CG33144 EXON CR44299
2L	12149317	2L_12149317_SNP [dm3] 2L_12149317_SNP [dm6]	T	G	4.384e^-4	0.848	INTRON CG31760
2L	12619615	2L_12619615_SNP [dm3] 2L_12619615_SNP [dm6]	T	A	4.389e^-4	0.848	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10874454	3R_10874454_SNP [dm3] 3R_15048732_SNP [dm6]	C	T	4.390e^-4	0.848	INTERGENIC
3R	23452418	3R_23452418_SNP [dm3] 3R_27626696_SNP [dm6]	T	A	4.395e^-4	0.848	UPSTREAM CG5612 INTRON Tusp
2L	5189295	2L_5189295_SNP [dm3] 2L_5189295_SNP [dm6]	C	T	4.396e^-4	0.848	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8331619	2R_8331619_SNP [dm3] 2R_12444114_SNP [dm6]	C	A	4.406e^-4	0.848	INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18088237	2L_18088237_SNP [dm3] 2L_18088237_SNP [dm6]	C	A	4.417e^-4	0.848	INTERGENIC
2L	6726885	2L_6726885_SNP [dm3] 2L_6726885_SNP [dm6]	A	G	4.422e^-4	0.848	INTRON Liprin-alpha
3L	9685318	3L_9685318_SNP [dm3] 3L_9692218_SNP [dm6]	T	C	4.423e^-4	0.848	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	6946340	X_6946340_SNP [dm3] X_7052307_SNP [dm6]	C	T	4.428e^-4	0.848	INTRON CG12541
3R	18943694	3R_18943694_SNP [dm3] 3R_23117972_SNP [dm6]	C	A	4.429e^-4	0.848	UPSTREAM CenB1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12322400	3L_12322400_SNP [dm3] 3L_12329300_SNP [dm6]	C	A	4.430e^-4	0.848	UTR_5_PRIME CG32105	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19150480	2R_19150480_INS [dm3] 2R_23262957_INS [dm6]	T	TGTATGATATGACTTGATAT...	4.438e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16769498	3L_16769498_SNP [dm3] 3L_16776398_SNP [dm6]	A	C	4.440e^-4	0.848	UTR_3_PRIME Nrt DOWNSTREAM CG13025	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	18947971	3R_18947971_SNP [dm3] 3R_23122249_SNP [dm6]	C	T	4.440e^-4	0.848	SYNONYMOUS_CODING CenB1A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26169719	3R_26169719_SNP [dm3] 3R_30343997_SNP [dm6]	T	C	4.447e^-4	0.848	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3R	15951037	3R_15951037_SNP [dm3] 3R_20125315_SNP [dm6]	C	T	4.453e^-4	0.848	INTERGENIC
2R	17991674	2R_17991674_SNP [dm3] 2R_22104169_SNP [dm6]	G	A	4.457e^-4	0.848	SYNONYMOUS_CODING CG6613	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9200595	3L_9200595_SNP [dm3] 3L_9207495_SNP [dm6]	A	G	4.471e^-4	0.848	UPSTREAM Slc45-1 INTRON Slc45-1
2L	10806516	2L_10806516_SNP [dm3] 2L_10806516_SNP [dm6]	C	A	4.471e^-4	0.848	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	4.471e^-4	0.848	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	13380041	3R_13380041_SNP [dm3] 3R_17554319_SNP [dm6]	G	T	4.472e^-4	0.848	INTERGENIC
2R	9380710	2R_9380710_SNP [dm3] 2R_13493205_SNP [dm6]	C	A	4.472e^-4	0.848	INTRON bbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11251059	3R_11251059_SNP [dm3] 3R_15425337_SNP [dm6]	T	G	4.477e^-4	0.848	INTRON CG6118	TF binding site mE1_TFBS_cad
3R	3992564	3R_3992564_SNP [dm3] 3R_8166842_SNP [dm6]	C	T	4.479e^-4	0.848	NON_SYNONYMOUS_CODING grn INTRON grn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4364968	2L_4364968_SNP [dm3] 2L_4364968_SNP [dm6]	C	T	4.487e^-4	0.848	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	11056499	X_11056499_SNP [dm3] X_11162466_SNP [dm6]	T	C	4.491e^-4	0.848	INTRON Dlic
3L	19410132	3L_19410132_SNP [dm3] 3L_19417032_SNP [dm6]	G	A	4.493e^-4	0.848	INTERGENIC
X	903503	X_903503_SNP [dm3] X_1009470_SNP [dm6]	C	T	4.494e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk
2R	12269372	2R_12269372_SNP [dm3] 2R_16381867_SNP [dm6]	T	A	4.496e^-4	0.848	UTR_3_PRIME CG43187
3R	25981917	3R_25981917_SNP [dm3] 3R_30156195_SNP [dm6]	A	G	4.506e^-4	0.848	UTR_5_PRIME CG11498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6726968	2L_6726968_SNP [dm3] 2L_6726968_SNP [dm6]	G	A	4.509e^-4	0.848	INTRON Liprin-alpha
X	10856053	X_10856053_SNP [dm3] X_10962020_SNP [dm6]	A	T	4.512e^-4	0.848	INTRON Myo10A
3R	23286892	3R_23286892_SNP [dm3] 3R_27461170_SNP [dm6]	A	T	4.519e^-4	0.848	INTERGENIC
3R	15302364	3R_15302364_SNP [dm3] 3R_19476642_SNP [dm6]	T	A	4.520e^-4	0.848	UPSTREAM Dys INTRON Dys
2R	10398887	2R_10398887_SNP [dm3] 2R_14511382_SNP [dm6]	C	A	4.525e^-4	0.848	UTR_3_PRIME Asx DOWNSTREAM Asx
3R	11251062	3R_11251062_SNP [dm3] 3R_15425340_SNP [dm6]	G	T	4.535e^-4	0.848	INTRON CG6118	TF binding site mE1_TFBS_cad
3R	11251069	3R_11251069_SNP [dm3] 3R_15425347_SNP [dm6]	A	T	4.535e^-4	0.848	INTRON CG6118	TF binding site mE1_TFBS_cad
2L	9099437	2L_9099437_SNP [dm3] 2L_9099437_SNP [dm6]	C	G	4.536e^-4	0.848	EXON CR44482
3R	24127816	3R_24127816_SNP [dm3] 3R_28302094_SNP [dm6]	C	T	4.541e^-4	0.848	INTERGENIC
3R	10865330	3R_10865330_SNP [dm3] 3R_15039608_SNP [dm6]	G	T	4.544e^-4	0.848	EXON CR44944	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20336480	2L_20336480_SNP [dm3] 2L_20336480_SNP [dm6]	A	G	4.547e^-4	0.848	SYNONYMOUS_CODING spir
3L	12813329	3L_12813329_SNP [dm3] 3L_12820229_SNP [dm6]	A	T	4.576e^-4	0.848	NON_SYNONYMOUS_CODING CG42588
3R	14308641	3R_14308641_SNP [dm3] 3R_18482919_SNP [dm6]	A	T	4.584e^-4	0.848	INTRON fru
3L	2623688	3L_2623688_SNP [dm3] 3L_2623688_SNP [dm6]	T	C	4.586e^-4	0.848	INTRON Pxn
2R	8337094	2R_8337094_SNP [dm3] 2R_12449589_SNP [dm6]	C	A	4.587e^-4	0.848	SYNONYMOUS_CODING Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8583434	3R_8583434_SNP [dm3] 3R_12757712_SNP [dm6]	A	G	4.588e^-4	0.848	INTRON beat-Vc	TF binding site mE1_TFBS_inv
X	11519495	X_11519495_SNP [dm3] X_11625462_SNP [dm6]	C	T	4.591e^-4	0.848	INTRON Ptp10D
X	7081021	X_7081021_SNP [dm3] X_7186988_SNP [dm6]	C	T	4.601e^-4	0.848	INTRON CG9650 & 1 other
2R	20466804	2R_20466804_SNP [dm3] 2R_24579281_SNP [dm6]	G	T	4.609e^-4	0.848	SYNONYMOUS_CODING CG4681	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10939599	2L_10939599_SNP [dm3] 2L_10939599_SNP [dm6]	G	T	4.610e^-4	0.848	INTRON dpr2
3L	7710133	3L_7710133_SNP [dm3] 3L_7717033_SNP [dm6]	T	C	4.610e^-4	0.848	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3126404	2L_3126404_SNP [dm3] 2L_3126404_SNP [dm6]	G	A	4.616e^-4	0.848	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	20443418	2R_20443418_SNP [dm3] 2R_24555895_SNP [dm6]	T	A	4.618e^-4	0.848	INTRON CG4622 & 1 other
3L	6916646	3L_6916646_SNP [dm3] 3L_6923546_SNP [dm6]	A	G	4.619e^-4	0.848	INTERGENIC
3R	13329078	3R_13329078_SNP [dm3] 3R_17503356_SNP [dm6]	A	G	4.625e^-4	0.848	INTRON Dscam3
2R	17425578	2R_17425578_SNP [dm3] 2R_21538073_SNP [dm6]	G	A	4.634e^-4	0.848	UPSTREAM CG30287 DOWNSTREAM CG33226 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12167295	2L_12167295_SNP [dm3] 2L_12167295_SNP [dm6]	C	T	4.634e^-4	0.848	SYNONYMOUS_CODING CG31760 DOWNSTREAM ZnT33D
2L	1238923	2L_1238923_SNP [dm3] 2L_1238923_SNP [dm6]	C	A	4.647e^-4	0.848	INTERGENIC
3R	26899515	3R_26899515_SNP [dm3] 3R_31073793_SNP [dm6]	T	G	4.649e^-4	0.848	INTRON Sox100B
3R	23456885	3R_23456885_SNP [dm3] 3R_27631163_SNP [dm6]	T	A	4.650e^-4	0.848	SYNONYMOUS_CODING Tusp	TF binding site mE1_TFBS_cad
2R	12295214	2R_12295214_SNP [dm3] 2R_16407709_SNP [dm6]	G	A	4.660e^-4	0.848	INTRON Sema-2b
2R	18734317	2R_18734317_SNP [dm3] 2R_22846794_SNP [dm6]	T	C	4.661e^-4	0.848	INTRON CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2646288	2R_2646288_SNP [dm3] 2R_6758783_SNP [dm6]	C	A	4.663e^-4	0.848	UTR_5_PRIME CG9436 DOWNSTREAM Epac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	12525349	2L_12525349_SNP [dm3] 2L_12525349_SNP [dm6]	T	C	4.668e^-4	0.848	INTRON bun
2R	19153508	2R_19153508_SNP [dm3] 2R_23265985_SNP [dm6]	T	A	4.675e^-4	0.848	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7566780	2L_7566780_SNP [dm3] 2L_7566780_SNP [dm6]	A	G	4.681e^-4	0.848	INTRON RapGAP1
2R	14663907	2R_14663907_SNP [dm3] 2R_18776402_SNP [dm6]	A	G	4.685e^-4	0.848	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	7231299	X_7231299_DEL [dm3] X_7337266_DEL [dm6]	ACG	T	4.690e^-4	0.848	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19793351	3L_19793351_SNP [dm3] 3L_19800251_SNP [dm6]	G	T	4.690e^-4	0.848	NON_SYNONYMOUS_CODING CG14102 INTRON Ir76a
3R	26416576	3R_26416576_SNP [dm3] 3R_30590854_SNP [dm6]	T	C	4.693e^-4	0.848	INTERGENIC
3L	15574444	3L_15574444_SNP [dm3] 3L_15581344_SNP [dm6]	C	A	4.700e^-4	0.848	UPSTREAM mrn INTRON CG12301	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	6267453	3R_6267453_SNP [dm3] 3R_10441731_SNP [dm6]	C	G	4.711e^-4	0.848	INTERGENIC
3R	24604786	3R_24604786_SNP [dm3] 3R_28779064_SNP [dm6]	G	A	4.712e^-4	0.848	INTERGENIC
3R	21021600	3R_21021600_SNP [dm3] 3R_25195878_SNP [dm6]	C	T	4.714e^-4	0.848	NON_SYNONYMOUS_CODING CG13653	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	9685084	3L_9685084_SNP [dm3] 3L_9691984_SNP [dm6]	G	C	4.726e^-4	0.848	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	2276295	3L_2276295_SNP [dm3] 3L_2276295_SNP [dm6]	T	A	4.726e^-4	0.848	UPSTREAM yellow-g2 INTERGENIC
X	12901197	X_12901197_INS [dm3] X_13007164_INS [dm6]	G	GAGTGTG	4.726e^-4	0.848	INTRON rad
3R	25203194	3R_25203194_SNP [dm3] 3R_29377472_SNP [dm6]	C	G	4.730e^-4	0.848	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19535135	3L_19535135_SNP [dm3] 3L_19542035_SNP [dm6]	C	A	4.736e^-4	0.848	NON_SYNONYMOUS_CODING CG9279	TF binding site mE1_TFBS_cad
2L	12621287	2L_12621287_SNP [dm3] 2L_12621287_SNP [dm6]	G	T	4.737e^-4	0.848	INTRON Ref2 & 1 other
2L	12621308	2L_12621308_SNP [dm3] 2L_12621308_SNP [dm6]	T	A	4.737e^-4	0.848	INTRON Ref2 & 1 other
X	15165990	X_15165990_DEL [dm3] X_15271957_DEL [dm6]	TAC	T	4.739e^-4	0.848	INTRON CG9106
3L	935914	3L_935914_SNP [dm3] 3L_935914_SNP [dm6]	C	T	4.745e^-4	0.848	INTRON Glut1
3R	6857046	3R_6857046_SNP [dm3] 3R_11031324_SNP [dm6]	C	T	4.745e^-4	0.848	INTRON CG34114
3R	17286930	3R_17286930_SNP [dm3] 3R_21461208_SNP [dm6]	G	T	4.750e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18733320	2R_18733320_SNP [dm3] 2R_22845797_SNP [dm6]	C	T	4.755e^-4	0.848	UPSTREAM CG3649 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23380969	3R_23380969_SNP [dm3] 3R_27555247_SNP [dm6]	C	T	4.759e^-4	0.848	INTRON Klp98A
3L	11011654	3L_11011654_SNP [dm3] 3L_11018554_SNP [dm6]	G	T	4.764e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12322545	3L_12322545_SNP [dm3] 3L_12329445_SNP [dm6]	G	C	4.766e^-4	0.848	UTR_5_PRIME CG32105	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl

Missing results

By genomic position
Variant impact
Gene name

mn_GenomeSize phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results