DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.305e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01135
In_2R_NS	0.07139

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.5685	0.0138
In_2R_NS	5.6513	0.0593

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1812 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	13875645	2R_13875645_SNP [dm3] 2R_17988140_SNP [dm6]	T	C	1.133e^-6	0.965	INTRON dpr13
2L	533659	2L_533659_SNP [dm3] 2L_533659_SNP [dm6]	T	C	2.798e^-6	0.965	INTRON ush	TF binding site mE1_TFBS_inv
3L	1363184	3L_1363184_SNP [dm3] 3L_1363184_SNP [dm6]	A	G	4.159e^-6	0.965	INTRON Ptp61F
2R	10178671	2R_10178671_SNP [dm3] 2R_14291166_SNP [dm6]	T	C	5.163e^-6	0.965	NON_SYNONYMOUS_CODING Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	1016477	2R_1016477_SNP [dm3] 2R_5128972_SNP [dm6]	G	T	5.418e^-6	0.965	SPLICE_SITE_ACCEPTOR CR43256 UPSTREAM gus INTRON CR43256
2L	16628444	2L_16628444_SNP [dm3] 2L_16628444_SNP [dm6]	G	A	6.074e^-6	0.965	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16376542	2L_16376542_INS [dm3] 2L_16376542_INS [dm6]	A	AA	6.841e^-6	0.965	INTERGENIC
3R	21066407	3R_21066407_SNP [dm3] 3R_25240685_SNP [dm6]	G	A	7.091e^-6	0.965	NON_SYNONYMOUS_CODING to	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7960518	2L_7960518_SNP [dm3] 2L_7960518_SNP [dm6]	T	C	9.387e^-6	0.965	INTRON Snoo
2L	8895957	2L_8895957_SNP [dm3] 2L_8895957_SNP [dm6]	A	G	9.485e^-6	0.965	INTERGENIC
2R	11396075	2R_11396075_SNP [dm3] 2R_15508570_SNP [dm6]	G	T	9.960e^-6	0.965	DOWNSTREAM Ir52d INTERGENIC	TF binding site mE1_TFBS_inv
2R	6340801	2R_6340801_SNP [dm3] 2R_10453296_SNP [dm6]	C	T	1.080e^-5	0.965	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
X	11662833	X_11662833_SNP [dm3] X_11768800_SNP [dm6]	A	G	1.125e^-5	0.965	UTR_3_PRIME m DOWNSTREAM dy
3L	9315202	3L_9315202_SNP [dm3] 3L_9322102_SNP [dm6]	C	T	1.209e^-5	0.965	INTERGENIC
2R	1014099	2R_1014099_SNP [dm3] 2R_5126594_SNP [dm6]	C	T	1.308e^-5	0.965	UPSTREAM CR43256 INTRON gus	transposable element FlyBase
2L	8895939	2L_8895939_SNP [dm3] 2L_8895939_SNP [dm6]	C	T	1.319e^-5	0.965	INTERGENIC
2L	580962	2L_580962_SNP [dm3] 2L_580962_SNP [dm6]	A	G	1.446e^-5	0.965	INTERGENIC
2L	8896128	2L_8896128_SNP [dm3] 2L_8896128_SNP [dm6]	T	A	1.494e^-5	0.965	INTERGENIC
2L	20070325	2L_20070325_SNP [dm3] 2L_20070325_SNP [dm6]	T	C	1.555e^-5	0.965	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16628423	2L_16628423_SNP [dm3] 2L_16628423_SNP [dm6]	T	C	1.653e^-5	0.965	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	21452450	X_21452450_SNP [dm3] X_21581423_SNP [dm6]	A	T	1.727e^-5	0.965	INTERGENIC
2R	12141869	2R_12141869_SNP [dm3] 2R_16254364_SNP [dm6]	C	G	1.760e^-5	0.965	INTRON CngA
2R	1012451	2R_1012451_SNP [dm3] 2R_5124946_SNP [dm6]	A	T	1.785e^-5	0.965	INTRON gus	transposable element FlyBase
3R	24797988	3R_24797988_SNP [dm3] 3R_28972266_SNP [dm6]	G	A	1.810e^-5	0.965	EXON CR45669
2R	16114803	2R_16114803_SNP [dm3] 2R_20227298_SNP [dm6]	A	G	1.837e^-5	0.965	INTERGENIC
2L	8896082	2L_8896082_SNP [dm3] 2L_8896082_SNP [dm6]	T	C	1.975e^-5	0.965	INTERGENIC
2L	6757041	2L_6757041_SNP [dm3] 2L_6757041_SNP [dm6]	T	A	2.036e^-5	0.965	DOWNSTREAM CG11221 & 1 other INTERGENIC
2R	11849206	2R_11849206_SNP [dm3] 2R_15961701_SNP [dm6]	G	A	2.046e^-5	0.965	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12141857	2R_12141857_SNP [dm3] 2R_16254352_SNP [dm6]	A	G	2.095e^-5	0.965	INTRON CngA
2L	20773285	2L_20773285_DEL [dm3] 2L_20773285_DEL [dm6]	TTATAT	T	2.097e^-5	0.965	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8896103	2L_8896103_SNP [dm3] 2L_8896103_SNP [dm6]	C	T	2.120e^-5	0.965	INTERGENIC
3L	12472001	3L_12472001_SNP [dm3] 3L_12478901_SNP [dm6]	T	G	2.172e^-5	0.965	INTRON CG10663
X	13032390	X_13032390_SNP [dm3] X_13138357_SNP [dm6]	A	T	2.177e^-5	0.965	UPSTREAM CG32645 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	1016407	2R_1016407_SNP [dm3] 2R_5128902_SNP [dm6]	A	T	2.179e^-5	0.965	UPSTREAM gus INTRON CR43256
2R	10536054	2R_10536054_SNP [dm3] 2R_14648549_SNP [dm6]	C	G	2.303e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18439482	2R_18439482_SNP [dm3] 2R_22551977_SNP [dm6]	A	G	2.370e^-5	0.965	UTR_3_PRIME CG6018 INTRON px	TF binding site mE1_TFBS_cad
3L	18594907	3L_18594907_SNP [dm3] 3L_18601807_SNP [dm6]	T	C	2.484e^-5	0.965	SPLICE_SITE_REGION CG13380 & 1 other INTRON CG13380 & 1 other
2R	12133569	2R_12133569_DEL [dm3] 2R_16246064_DEL [dm6]	GG	G	2.508e^-5	0.965	INTRON CngA	TF binding site mE1_TFBS_chinmo
3L	2537937	3L_2537937_SNP [dm3] 3L_2537937_SNP [dm6]	A	T	2.521e^-5	0.965	INTRON Spn
3L	9150045	3L_9150045_SNP [dm3] 3L_9156945_SNP [dm6]	G	T	2.544e^-5	0.965	INTRON Rdl
2R	18551006	2R_18551006_SNP [dm3] 2R_22663501_SNP [dm6]	C	G	2.655e^-5	0.965	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
X	16455802	X_16455802_SNP [dm3] X_16561769_SNP [dm6]	C	A	2.686e^-5	0.965	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl
2L	17642886	2L_17642886_SNP [dm3] 2L_17642886_SNP [dm6]	G	A	2.776e^-5	0.965	INTERGENIC
3L	4367121	3L_4367121_SNP [dm3] 3L_4367121_SNP [dm6]	C	T	2.923e^-5	0.965	SYNONYMOUS_CODING CG11342 DOWNSTREAM DopEcR & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8896144	2L_8896144_SNP [dm3] 2L_8896144_SNP [dm6]	A	T	2.972e^-5	0.965	INTERGENIC
2R	18550983	2R_18550983_SNP [dm3] 2R_22663478_SNP [dm6]	A	G	2.986e^-5	0.965	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2R	1015170	2R_1015170_DEL [dm3] 2R_5127665_DEL [dm6]	TA	T	3.014e^-5	0.965	UPSTREAM CR43256 INTRON gus & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	1363163	3L_1363163_SNP [dm3] 3L_1363163_SNP [dm6]	G	A	3.065e^-5	0.965	INTRON Ptp61F
3L	1363173	3L_1363173_SNP [dm3] 3L_1363173_SNP [dm6]	G	A	3.189e^-5	0.965	INTRON Ptp61F
2L	8896151	2L_8896151_SNP [dm3] 2L_8896151_SNP [dm6]	T	A	3.231e^-5	0.965	INTERGENIC
3L	2335415	3L_2335415_SNP [dm3] 3L_2335415_SNP [dm6]	T	C	3.237e^-5	0.965	INTRON MsR1
2L	15978655	2L_15978655_SNP [dm3] 2L_15978655_SNP [dm6]	C	A	3.321e^-5	0.965	UPSTREAM CG10839 INTERGENIC
2L	8896148	2L_8896148_SNP [dm3] 2L_8896148_SNP [dm6]	T	A	3.408e^-5	0.965	INTERGENIC
2L	8896052	2L_8896052_SNP [dm3] 2L_8896052_SNP [dm6]	A	G	3.543e^-5	0.965	INTERGENIC
2L	14307501	2L_14307501_SNP [dm3] 2L_14307501_SNP [dm6]	T	G	3.547e^-5	0.965	INTRON wb
2L	19775435	2L_19775435_SNP [dm3] 2L_19775435_SNP [dm6]	C	G	3.572e^-5	0.965	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
3R	9451895	3R_9451895_MNP [dm3] 3R_13626173_MNP [dm6]	TGA	AAT	3.596e^-5	0.965	INTERGENIC
2R	1023664	2R_1023664_SNP [dm3] 2R_5136159_SNP [dm6]	A	T	3.639e^-5	0.965	INTERGENIC	transposable element FlyBase
3L	8764226	3L_8764226_SNP [dm3] 3L_8771126_SNP [dm6]	G	A	3.646e^-5	0.965	INTRON Fhos
3L	4367097	3L_4367097_SNP [dm3] 3L_4367097_SNP [dm6]	C	T	3.654e^-5	0.965	SYNONYMOUS_CODING CG11342 DOWNSTREAM DopEcR & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4433984	2R_4433984_SNP [dm3] 2R_8546479_SNP [dm6]	C	T	3.834e^-5	0.965	INTERGENIC
2R	4434002	2R_4434002_SNP [dm3] 2R_8546497_SNP [dm6]	G	A	3.834e^-5	0.965	INTERGENIC
2L	581667	2L_581667_SNP [dm3] 2L_581667_SNP [dm6]	A	T	3.840e^-5	0.965	INTERGENIC
3L	5638590	3L_5638590_SNP [dm3] 3L_5645490_SNP [dm6]	A	T	3.993e^-5	0.965	INTRON Blimp-1
2L	8896079	2L_8896079_SNP [dm3] 2L_8896079_SNP [dm6]	C	T	3.995e^-5	0.965	INTERGENIC
2L	21067737	2L_21067737_SNP [dm3] 2L_21067737_SNP [dm6]	A	G	4.061e^-5	0.965	INTRON CG9265
3L	1363178	3L_1363178_INS [dm3] 3L_1363178_INS [dm6]	A	ATGGGCACCTAATTACTTTG...	4.133e^-5	0.965	INTRON Ptp61F
2L	8896157	2L_8896157_SNP [dm3] 2L_8896157_SNP [dm6]	C	A	4.151e^-5	0.965	INTERGENIC
X	10855844	X_10855844_SNP [dm3] X_10961811_SNP [dm6]	G	A	4.152e^-5	0.965	INTRON Myo10A
3L	1363177	3L_1363177_SNP [dm3] 3L_1363177_SNP [dm6]	T	A	4.154e^-5	0.965	INTRON Ptp61F
2R	17696189	2R_17696189_SNP [dm3] 2R_21808684_SNP [dm6]	A	C	4.181e^-5	0.965	INTERGENIC
2R	17278177	2R_17278177_SNP [dm3] 2R_21390672_SNP [dm6]	C	T	4.225e^-5	0.965	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
3L	8760685	3L_8760685_SNP [dm3] 3L_8767585_SNP [dm6]	C	T	4.441e^-5	0.965	INTRON Fhos
2R	14635901	2R_14635901_SNP [dm3] 2R_18748396_SNP [dm6]	C	T	4.563e^-5	0.965	SYNONYMOUS_CODING Hs3st-A
2R	17309989	2R_17309989_SNP [dm3] 2R_21422484_SNP [dm6]	C	A	4.577e^-5	0.965	INTRON Sdc
2R	15840265	2R_15840265_SNP [dm3] 2R_19952760_SNP [dm6]	T	C	4.580e^-5	0.965	DOWNSTREAM CG10822 INTERGENIC
3L	8030125	3L_8030125_SNP [dm3] 3L_8037025_SNP [dm6]	C	T	4.620e^-5	0.965	INTRON nmo	TF binding site mE1_TFBS_inv
2L	9214896	2L_9214896_SNP [dm3] 2L_9214896_SNP [dm6]	T	C	4.670e^-5	0.965	INTRON tai
3L	8760691	3L_8760691_SNP [dm3] 3L_8767591_SNP [dm6]	C	T	4.708e^-5	0.965	INTRON Fhos
2R	11792282	2R_11792282_SNP [dm3] 2R_15904777_SNP [dm6]	G	A	4.800e^-5	0.965	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8896084	2L_8896084_SNP [dm3] 2L_8896084_SNP [dm6]	A	T	4.835e^-5	0.965	INTERGENIC
3L	1362941	3L_1362941_SNP [dm3] 3L_1362941_SNP [dm6]	A	G	4.843e^-5	0.965	INTRON Ptp61F
3L	12829099	3L_12829099_SNP [dm3] 3L_12835999_SNP [dm6]	G	A	4.849e^-5	0.965	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6340800	2R_6340800_SNP [dm3] 2R_10453295_SNP [dm6]	C	A	4.886e^-5	0.965	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
2L	8896064	2L_8896064_SNP [dm3] 2L_8896064_SNP [dm6]	G	T	4.947e^-5	0.965	INTERGENIC
3L	11645273	3L_11645273_SNP [dm3] 3L_11652173_SNP [dm6]	G	T	4.996e^-5	0.965	INTRON CG32085
2L	4311371	2L_4311371_SNP [dm3] 2L_4311371_SNP [dm6]	A	C	5.067e^-5	0.965	INTRON tutl
3L	12471948	3L_12471948_SNP [dm3] 3L_12478848_SNP [dm6]	T	C	5.169e^-5	0.965	INTRON CG10663
X	13967118	X_13967118_SNP [dm3] X_14073085_SNP [dm6]	T	C	5.235e^-5	0.965	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	17210639	2R_17210639_SNP [dm3] 2R_21323134_SNP [dm6]	G	A	5.250e^-5	0.965	UTR_5_PRIME CG30394 UPSTREAM dom INTRON CG30394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens
3L	19961322	3L_19961322_SNP [dm3] 3L_19968222_SNP [dm6]	A	G	5.298e^-5	0.965	INTRON Ac76E
2R	1016999	2R_1016999_SNP [dm3] 2R_5129494_SNP [dm6]	A	C	5.329e^-5	0.965	DOWNSTREAM CR43256 INTERGENIC
3L	8761259	3L_8761259_SNP [dm3] 3L_8768159_SNP [dm6]	A	G	5.342e^-5	0.965	INTRON Fhos
2R	1013465	2R_1013465_SNP [dm3] 2R_5125960_SNP [dm6]	T	A	5.354e^-5	0.965	INTRON gus	transposable element FlyBase
2L	9783980	2L_9783980_SNP [dm3] 2L_9783980_SNP [dm6]	G	A	5.357e^-5	0.965	INTRON IP3K1
3R	23865322	3R_23865322_SNP [dm3] 3R_28039600_SNP [dm6]	T	A	5.373e^-5	0.965	INTRON CG34362
2R	1020514	2R_1020514_SNP [dm3] 2R_5133009_SNP [dm6]	C	G	5.456e^-5	0.965	INTERGENIC	transposable element FlyBase
2L	17641292	2L_17641292_INS [dm3] 2L_17641292_INS [dm6]	A	ATTCCTAGAACGAGGAATAT...	5.471e^-5	0.965	INTERGENIC
3R	22814530	3R_22814530_SNP [dm3] 3R_26988808_SNP [dm6]	T	A	5.549e^-5	0.965	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3L	8760774	3L_8760774_SNP [dm3] 3L_8767674_SNP [dm6]	G	A	5.564e^-5	0.965	INTRON Fhos
2L	9214578	2L_9214578_SNP [dm3] 2L_9214578_SNP [dm6]	A	T	5.574e^-5	0.965	INTRON tai
3R	10808270	3R_10808270_SNP [dm3] 3R_14982548_SNP [dm6]	G	A	5.587e^-5	0.965	INTERGENIC
2R	18439489	2R_18439489_SNP [dm3] 2R_22551984_SNP [dm6]	A	T	5.597e^-5	0.965	UTR_3_PRIME CG6018 INTRON px	TF binding site mE1_TFBS_cad
3L	7231135	3L_7231135_SNP [dm3] 3L_7238035_SNP [dm6]	A	T	5.640e^-5	0.965	NON_SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14376253	3R_14376253_SNP [dm3] 3R_18550531_SNP [dm6]	C	T	5.794e^-5	0.965	INTERGENIC
2L	8896094	2L_8896094_DEL [dm3] 2L_8896094_DEL [dm6]	TT	C	5.807e^-5	0.965	INTERGENIC
2L	21067707	2L_21067707_SNP [dm3] 2L_21067707_SNP [dm6]	T	C	5.816e^-5	0.965	INTRON CG9265
X	11666639	X_11666639_SNP [dm3] X_11772606_SNP [dm6]	T	A	5.822e^-5	0.965	INTRON dy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1015195	2R_1015195_SNP [dm3] 2R_5127690_SNP [dm6]	T	C	5.844e^-5	0.965	UPSTREAM CR43256 INTRON gus & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	1016363	2R_1016363_SNP [dm3] 2R_5128858_SNP [dm6]	G	A	5.938e^-5	0.965	UPSTREAM gus INTRON CR43256	TF binding site mE1_TFBS_HSA
2L	17008390	2L_17008390_SNP [dm3] 2L_17008390_SNP [dm6]	G	C	5.951e^-5	0.965	INTERGENIC
3L	8760421	3L_8760421_SNP [dm3] 3L_8767321_SNP [dm6]	G	A	6.041e^-5	0.965	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5802737	2L_5802737_SNP [dm3] 2L_5802737_SNP [dm6]	C	A	6.105e^-5	0.965	UPSTREAM CG14005 INTRON CG7239	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22814532	3R_22814532_SNP [dm3] 3R_26988810_SNP [dm6]	A	G	6.113e^-5	0.965	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2L	3869673	2L_3869673_SNP [dm3] 2L_3869673_SNP [dm6]	C	T	6.120e^-5	0.965	SYNONYMOUS_CODING Cep97 UPSTREAM Cep97
2R	18896072	2R_18896072_SNP [dm3] 2R_23008549_SNP [dm6]	G	T	6.210e^-5	0.965	INTRON twi	TF binding site mE1_TFBS_chinmo
3R	21242930	3R_21242930_SNP [dm3] 3R_25417208_SNP [dm6]	A	G	6.227e^-5	0.965	INTRON Fur1
3R	22811727	3R_22811727_SNP [dm3] 3R_26986005_SNP [dm6]	A	G	6.376e^-5	0.965	SYNONYMOUS_CODING CG31075 DOWNSTREAM CG14253	TF binding site mE1_TFBS_cad
2L	8896087	2L_8896087_SNP [dm3] 2L_8896087_SNP [dm6]	C	T	6.379e^-5	0.965	INTERGENIC
2L	4844803	2L_4844803_SNP [dm3] 2L_4844803_SNP [dm6]	T	C	6.527e^-5	0.965	INTRON mxt	TF binding site mE1_TFBS_chinmo
2L	6027502	2L_6027502_SNP [dm3] 2L_6027502_SNP [dm6]	T	C	6.546e^-5	0.965	INTRON CG9109
2L	5802593	2L_5802593_SNP [dm3] 2L_5802593_SNP [dm6]	C	T	6.591e^-5	0.965	SYNONYMOUS_CODING CG7239 UPSTREAM CG14005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8896101	2L_8896101_SNP [dm3] 2L_8896101_SNP [dm6]	A	C	6.635e^-5	0.965	INTERGENIC
2L	6026096	2L_6026096_SNP [dm3] 2L_6026096_SNP [dm6]	G	A	6.685e^-5	0.965	INTRON CG9109
2L	9865159	2L_9865159_SNP [dm3] 2L_9865159_SNP [dm6]	T	G	6.820e^-5	0.965	INTRON nAChRalpha6
2L	21062927	2L_21062927_SNP [dm3] 2L_21062927_SNP [dm6]	G	A	6.840e^-5	0.965	INTRON CG9265
2L	1034285	2L_1034285_SNP [dm3] 2L_1034285_SNP [dm6]	T	A	6.893e^-5	0.965	INTRON IA-2
3R	19775294	3R_19775294_SNP [dm3] 3R_23949572_SNP [dm6]	G	T	6.950e^-5	0.965	INTERGENIC
2L	4056467	2L_4056467_SNP [dm3] 2L_4056467_SNP [dm6]	C	A	6.977e^-5	0.965	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9865185	2L_9865185_SNP [dm3] 2L_9865185_SNP [dm6]	A	G	6.979e^-5	0.965	INTRON nAChRalpha6
2L	19316538	2L_19316538_DEL [dm3] 2L_19316538_DEL [dm6]	AA	A	6.996e^-5	0.965	INTERGENIC
2L	524527	2L_524527_SNP [dm3] 2L_524527_SNP [dm6]	A	G	7.023e^-5	0.965	INTRON ush	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	16455718	X_16455718_SNP [dm3] X_16561685_SNP [dm6]	C	T	7.052e^-5	0.965	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl
2L	20959777	2L_20959777_SNP [dm3] 2L_20959777_SNP [dm6]	G	T	7.083e^-5	0.965	INTERGENIC
3R	9758528	3R_9758528_SNP [dm3] 3R_13932806_SNP [dm6]	T	C	7.098e^-5	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14749477	2R_14749477_SNP [dm3] 2R_18861972_SNP [dm6]	T	G	7.190e^-5	0.965	UTR_5_PRIME Jheh3 UPSTREAM CG43069
2L	8894967	2L_8894967_SNP [dm3] 2L_8894967_SNP [dm6]	A	G	7.236e^-5	0.965	INTERGENIC
3L	2548595	3L_2548595_DEL [dm3] 3L_2548595_DEL [dm6]	CCA	C	7.283e^-5	0.965	INTRON Spn
3L	2548609	3L_2548609_SNP [dm3] 3L_2548609_SNP [dm6]	G	A	7.283e^-5	0.965	INTRON Spn
3L	2548620	3L_2548620_SNP [dm3] 3L_2548620_SNP [dm6]	G	A	7.283e^-5	0.965	INTRON Spn
2L	20997569	2L_20997569_SNP [dm3] 2L_20997569_SNP [dm6]	G	C	7.321e^-5	0.965	INTRON CG42238
2R	17278193	2R_17278193_SNP [dm3] 2R_21390688_SNP [dm6]	G	A	7.340e^-5	0.965	NON_SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
3R	8188497	3R_8188497_SNP [dm3] 3R_12362775_SNP [dm6]	G	A	7.358e^-5	0.965	SYNONYMOUS_CODING CG4115 UPSTREAM snmRNA:419 DOWNSTREAM Tim17a1
3L	8764015	3L_8764015_SNP [dm3] 3L_8770915_SNP [dm6]	G	A	7.496e^-5	0.971	INTRON Fhos
X	9510253	X_9510253_SNP [dm3] X_9616220_SNP [dm6]	T	C	7.505e^-5	0.971	UTR_5_PRIME CG42797 INTRON CG42797
3R	22822232	3R_22822232_SNP [dm3] 3R_26996510_SNP [dm6]	T	A	7.573e^-5	0.973	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
3L	9227668	3L_9227668_SNP [dm3] 3L_9234568_SNP [dm6]	C	G	7.833e^-5	0.979	DOWNSTREAM CG4483 INTERGENIC
2R	18439724	2R_18439724_SNP [dm3] 2R_22552219_SNP [dm6]	T	C	8.019e^-5	0.979	DOWNSTREAM CG6018 INTRON px
X	1601506	X_1601506_SNP [dm3] X_1707473_SNP [dm6]	C	T	8.052e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1601512	X_1601512_SNP [dm3] X_1707479_SNP [dm6]	C	T	8.052e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17259715	2L_17259715_SNP [dm3] 2L_17259715_SNP [dm6]	C	A	8.055e^-5	0.979	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
2R	1020174	2R_1020174_SNP [dm3] 2R_5132669_SNP [dm6]	A	C	8.056e^-5	0.979	INTERGENIC	transposable element FlyBase
X	11687956	X_11687956_SNP [dm3] X_11793923_SNP [dm6]	C	A	8.066e^-5	0.979	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_sens
3L	1343328	3L_1343328_SNP [dm3] 3L_1343328_SNP [dm6]	G	T	8.086e^-5	0.979	UTR_3_PRIME Ptp61F UPSTREAM CG2199 DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8896090	2L_8896090_SNP [dm3] 2L_8896090_SNP [dm6]	G	A	8.095e^-5	0.979	INTERGENIC
3L	8765198	3L_8765198_SNP [dm3] 3L_8772098_SNP [dm6]	T	C	8.176e^-5	0.979	INTRON Fhos
3R	22815752	3R_22815752_SNP [dm3] 3R_26990030_SNP [dm6]	A	G	8.199e^-5	0.979	UPSTREAM CG31076 INTERGENIC
2L	7271620	2L_7271620_SNP [dm3] 2L_7271620_SNP [dm6]	T	A	8.310e^-5	0.979	INTRON Wnt4	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	11937868	2L_11937868_SNP [dm3] 2L_11937868_SNP [dm6]	G	A	8.344e^-5	0.979	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC	TF binding site mE1_TFBS_cad
2L	848353	2L_848353_SNP [dm3] 2L_848353_SNP [dm6]	T	A	8.354e^-5	0.979	INTRON drongo	TF binding site mE1_TFBS_sens
3L	2548640	3L_2548640_SNP [dm3] 3L_2548640_SNP [dm6]	A	C	8.477e^-5	0.986	INTRON Spn
2R	1352043	2R_1352043_SNP [dm3] 2R_5464538_SNP [dm6]	G	A	8.522e^-5	0.986	INTERGENIC	transposable element FlyBase
3R	22815772	3R_22815772_SNP [dm3] 3R_26990050_SNP [dm6]	G	A	8.743e^-5	0.999	UPSTREAM CG31076 INTERGENIC
3L	8666187	3L_8666187_SNP [dm3] 3L_8673087_SNP [dm6]	T	C	8.770e^-5	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	10855888	X_10855888_SNP [dm3] X_10961855_SNP [dm6]	A	T	8.872e^-5	0.999	INTRON Myo10A
2R	7123491	2R_7123491_SNP [dm3] 2R_11235986_SNP [dm6]	T	G	9.222e^-5	0.999	DOWNSTREAM CG13217 & 1 other INTRON CG34223
3L	8760686	3L_8760686_SNP [dm3] 3L_8767586_SNP [dm6]	C	T	9.248e^-5	0.999	INTRON Fhos
X	11667828	X_11667828_SNP [dm3] X_11773795_SNP [dm6]	T	A	9.303e^-5	0.999	INTRON dy
2L	8616666	2L_8616666_DEL [dm3] 2L_8616666_DEL [dm6]	AGCGATTTGTCAGCTGCCGC...	A	9.412e^-5	0.999	INTRON Sema-1a
2L	21025359	2L_21025359_SNP [dm3] 2L_21025359_SNP [dm6]	G	T	9.439e^-5	0.999	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17864226	2R_17864226_SNP [dm3] 2R_21976721_SNP [dm6]	C	T	9.451e^-5	0.999	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
3L	8777775	3L_8777775_DEL [dm3] 3L_8784675_DEL [dm6]	GAACCGG	G	9.581e^-5	0.999	INTRON Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	6021736	3L_6021736_SNP [dm3] 3L_6028636_SNP [dm6]	A	G	9.600e^-5	0.999	INTERGENIC
3L	1363811	3L_1363811_INS [dm3] 3L_1363811_INS [dm6]	C	CT	9.607e^-5	0.999	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8757063	2R_8757063_SNP [dm3] 2R_12869558_SNP [dm6]	T	A	9.608e^-5	0.999	UPSTREAM bic & 1 other EXON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	22071938	3R_22071938_SNP [dm3] 3R_26246216_SNP [dm6]	T	G	9.611e^-5	0.999	INTRON CR42745
2L	17185171	2L_17185171_SNP [dm3] 2L_17185171_SNP [dm6]	G	T	9.637e^-5	0.999	INTERGENIC
2L	20017836	2L_20017836_SNP [dm3] 2L_20017836_SNP [dm6]	C	A	9.696e^-5	0.999	UPSTREAM CG43861 INTERGENIC
3L	8766938	3L_8766938_SNP [dm3] 3L_8773838_SNP [dm6]	T	C	9.729e^-5	0.999	INTRON Fhos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	12580013	2R_12580013_SNP [dm3] 2R_16692508_SNP [dm6]	C	A	9.896e^-5	0.999	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
2R	11806334	2R_11806334_SNP [dm3] 2R_15918829_SNP [dm6]	T	C	9.941e^-5	0.999	INTRON sli	TF binding site mE1_TFBS_HSA
2R	5820715	2R_5820715_SNP [dm3] 2R_9933210_SNP [dm6]	T	C	9.969e^-5	0.999	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	12355444	X_12355444_SNP [dm3] X_12461411_SNP [dm6]	C	T	1.010e^-4	0.999	INTRON Rab40
2L	390286	2L_390286_SNP [dm3] 2L_390286_SNP [dm6]	G	A	1.080e^-4	0.999	INTERGENIC
3L	16310448	3L_16310448_SNP [dm3] 3L_16317348_SNP [dm6]	C	A	1.096e^-4	0.999	UPSTREAM Nplp3 INTERGENIC
3R	15644923	3R_15644923_SNP [dm3] 3R_19819201_SNP [dm6]	A	G	1.098e^-4	0.999	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	709022	2L_709022_SNP [dm3] 2L_709022_SNP [dm6]	A	G	1.100e^-4	0.999	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7958966	2L_7958966_SNP [dm3] 2L_7958966_SNP [dm6]	G	T	1.108e^-4	0.999	INTRON Snoo
X	13966999	X_13966999_SNP [dm3] X_14072966_SNP [dm6]	A	C	1.112e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	18439697	2R_18439697_SNP [dm3] 2R_22552192_SNP [dm6]	C	G	1.129e^-4	0.999	DOWNSTREAM CG6018 INTRON px
3L	7608756	3L_7608756_SNP [dm3] 3L_7615656_SNP [dm6]	A	T	1.134e^-4	0.999	INTRON CG33275
3L	14845009	3L_14845009_SNP [dm3] 3L_14851909_SNP [dm6]	C	T	1.137e^-4	0.999	INTRON CG17839
2R	1020234	2R_1020234_SNP [dm3] 2R_5132729_SNP [dm6]	G	A	1.141e^-4	0.999	INTERGENIC	transposable element FlyBase
3R	23865305	3R_23865305_SNP [dm3] 3R_28039583_SNP [dm6]	C	G	1.149e^-4	0.999	INTRON CG34362
3R	22810925	3R_22810925_SNP [dm3] 3R_26985203_SNP [dm6]	T	G	1.151e^-4	0.999	SYNONYMOUS_CODING CG14253 DOWNSTREAM CG31075	TF binding site mE1_TFBS_inv
3L	12934697	3L_12934697_SNP [dm3] 3L_12941597_SNP [dm6]	G	C	1.160e^-4	0.999	INTERGENIC
2L	20626798	2L_20626798_SNP [dm3] 2L_20626798_SNP [dm6]	C	T	1.169e^-4	0.999	UPSTREAM CR44909 INTERGENIC
3L	16236817	3L_16236817_SNP [dm3] 3L_16243717_SNP [dm6]	A	C	1.187e^-4	0.999	INTERGENIC
3L	8760781	3L_8760781_SNP [dm3] 3L_8767681_SNP [dm6]	G	T	1.187e^-4	0.999	INTRON Fhos
2R	16122527	2R_16122527_SNP [dm3] 2R_20235022_SNP [dm6]	A	T	1.188e^-4	0.999	START_GAINED CG44624 UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
X	15996647	X_15996647_SNP [dm3] X_16102614_SNP [dm6]	C	T	1.188e^-4	0.999	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9784037	2L_9784037_SNP [dm3] 2L_9784037_SNP [dm6]	C	T	1.193e^-4	0.999	INTRON IP3K1
2L	17641282	2L_17641282_SNP [dm3] 2L_17641282_SNP [dm6]	A	T	1.195e^-4	0.999	INTERGENIC
2R	16122529	2R_16122529_SNP [dm3] 2R_20235024_SNP [dm6]	G	C	1.197e^-4	0.999	UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	11181363	2R_11181363_INS [dm3] 2R_15293858_INS [dm6]	C	CT	1.204e^-4	0.999	DOWNSTREAM CR44241 INTRON Trpm
X	14539050	X_14539050_INS [dm3] X_14645017_INS [dm6]	T	TT	1.205e^-4	0.999	INTRON NetA
2R	11806383	2R_11806383_SNP [dm3] 2R_15918878_SNP [dm6]	A	T	1.221e^-4	0.999	INTRON sli	TF binding site mE1_TFBS_HSA
2R	6290823	2R_6290823_SNP [dm3] 2R_10403318_SNP [dm6]	G	A	1.221e^-4	0.999	INTRON CG42732
3R	10807767	3R_10807767_SNP [dm3] 3R_14982045_SNP [dm6]	G	A	1.223e^-4	0.999	INTERGENIC
3L	2537787	3L_2537787_SNP [dm3] 3L_2537787_SNP [dm6]	A	G	1.230e^-4	0.999	INTRON Spn
2R	11804889	2R_11804889_INS [dm3] 2R_15917384_INS [dm6]	T	TT	1.232e^-4	0.999	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2L	20474320	2L_20474320_SNP [dm3] 2L_20474320_SNP [dm6]	T	G	1.233e^-4	0.999	UPSTREAM CG43233 INTRON CR44980
3R	26848068	3R_26848068_SNP [dm3] 3R_31022346_SNP [dm6]	A	T	1.234e^-4	0.999	INTERGENIC
3L	15075627	3L_15075627_SNP [dm3] 3L_15082527_SNP [dm6]	A	C	1.234e^-4	0.999	INTRON cp309	TF binding site mE1_TFBS_cad
3L	1363632	3L_1363632_DEL [dm3] 3L_1363632_DEL [dm6]	CC	C	1.237e^-4	0.999	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7241142	2L_7241142_SNP [dm3] 2L_7241142_SNP [dm6]	A	T	1.240e^-4	0.999	UPSTREAM Ndae1 INTRON Ndae1
3L	634628	3L_634628_SNP [dm3] 3L_634628_SNP [dm6]	A	T	1.241e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19043266	2R_19043266_SNP [dm3] 2R_23155743_SNP [dm6]	T	C	1.244e^-4	0.999	INTRON CG9899
2L	524529	2L_524529_DEL [dm3] 2L_524529_DEL [dm6]	CA	C	1.245e^-4	0.999	INTRON ush	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9214592	2L_9214592_SNP [dm3] 2L_9214592_SNP [dm6]	G	A	1.250e^-4	0.999	INTRON tai
3R	10808271	3R_10808271_SNP [dm3] 3R_14982549_SNP [dm6]	C	T	1.257e^-4	0.999	INTERGENIC
2L	4825500	2L_4825500_SNP [dm3] 2L_4825500_SNP [dm6]	G	A	1.270e^-4	0.999	INTRON CG15628
3R	22814520	3R_22814520_SNP [dm3] 3R_26988798_SNP [dm6]	A	C	1.304e^-4	0.999	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3L	6681685	3L_6681685_SNP [dm3] 3L_6688585_SNP [dm6]	T	C	1.310e^-4	0.999	DOWNSTREAM SP1173 INTERGENIC
2L	17185172	2L_17185172_SNP [dm3] 2L_17185172_SNP [dm6]	C	T	1.323e^-4	0.999	INTERGENIC
3R	8188542	3R_8188542_SNP [dm3] 3R_12362820_SNP [dm6]	A	G	1.338e^-4	0.999	SYNONYMOUS_CODING CG4115 UPSTREAM snmRNA:419 DOWNSTREAM Tim17a1
2L	21028211	2L_21028211_SNP [dm3] 2L_21028211_SNP [dm6]	C	A	1.338e^-4	0.999	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12223418	2R_12223418_SNP [dm3] 2R_16335913_SNP [dm6]	C	A	1.341e^-4	0.999	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12444082	2L_12444082_SNP [dm3] 2L_12444082_SNP [dm6]	A	C	1.342e^-4	0.999	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13663710	3L_13663710_SNP [dm3] 3L_13670610_SNP [dm6]	G	C	1.347e^-4	0.999	INTRON bru-3
2R	12907561	2R_12907561_SNP [dm3] 2R_17020056_SNP [dm6]	C	A	1.354e^-4	0.999	UTR_5_PRIME Ark UPSTREAM CG8963	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	10808361	3R_10808361_SNP [dm3] 3R_14982639_SNP [dm6]	C	A	1.366e^-4	0.999	INTERGENIC
3L	1710777	3L_1710777_SNP [dm3] 3L_1710777_SNP [dm6]	G	T	1.375e^-4	0.999	INTRON CG7991	TF binding site mE1_TFBS_chinmo
2R	11305689	2R_11305689_SNP [dm3] 2R_15418184_SNP [dm6]	G	A	1.385e^-4	0.999	INTRON CG43729
3R	26715197	3R_26715197_SNP [dm3] 3R_30889475_SNP [dm6]	A	G	1.386e^-4	0.999	UPSTREAM Sap-r INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1018189	2R_1018189_SNP [dm3] 2R_5130684_SNP [dm6]	C	T	1.395e^-4	0.999	INTERGENIC	transposable element FlyBase
2L	5510265	2L_5510265_SNP [dm3] 2L_5510265_SNP [dm6]	C	T	1.397e^-4	0.999	INTERGENIC
2R	1333852	2R_1333852_SNP [dm3] 2R_5446347_SNP [dm6]	C	T	1.409e^-4	0.999	INTRON laccase2	TF binding site BDTNP1_TFBS_twi
2R	1333299	2R_1333299_SNP [dm3] 2R_5445794_SNP [dm6]	C	A	1.410e^-4	0.999	INTRON laccase2	transposable element FlyBase
3R	22760914	3R_22760914_SNP [dm3] 3R_26935192_SNP [dm6]	A	C	1.413e^-4	0.999	INTRON sda
3R	26155877	3R_26155877_SNP [dm3] 3R_30330155_SNP [dm6]	T	C	1.415e^-4	0.999	INTRON hdc
3L	633009	3L_633009_SNP [dm3] 3L_633009_SNP [dm6]	C	A	1.423e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18452463	2R_18452463_SNP [dm3] 2R_22564958_SNP [dm6]	C	T	1.428e^-4	0.999	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1336655	2R_1336655_SNP [dm3] 2R_5449150_SNP [dm6]	G	A	1.434e^-4	0.999	INTRON laccase2	transposable element FlyBase
2L	9214590	2L_9214590_SNP [dm3] 2L_9214590_SNP [dm6]	T	A	1.442e^-4	0.999	INTRON tai
X	21363568	X_21363568_SNP [dm3] X_21492541_SNP [dm6]	C	T	1.450e^-4	0.999	INTERGENIC
3L	17612058	3L_17612058_SNP [dm3] 3L_17618958_SNP [dm6]	C	G	1.455e^-4	0.999	UTR_5_PRIME Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7404223	2L_7404223_SNP [dm3] 2L_7404223_SNP [dm6]	C	A	1.462e^-4	0.999	INTRON CG5171
2R	18038670	2R_18038670_SNP [dm3] 2R_22151165_SNP [dm6]	C	T	1.465e^-4	0.999	INTRON a
X	11667804	X_11667804_SNP [dm3] X_11773771_SNP [dm6]	A	G	1.480e^-4	0.999	INTRON dy
2R	13727984	2R_13727984_SNP [dm3] 2R_17840479_SNP [dm6]	T	A	1.484e^-4	0.999	SYNONYMOUS_CODING grh
3L	7017326	3L_7017326_SNP [dm3] 3L_7024226_SNP [dm6]	A	C	1.484e^-4	0.999	INTRON Mp
3R	24800572	3R_24800572_SNP [dm3] 3R_28974850_SNP [dm6]	C	A	1.487e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11390032	3L_11390032_SNP [dm3] 3L_11396932_SNP [dm6]	C	T	1.490e^-4	0.999	UPSTREAM CG44362 INTERGENIC
3R	10426188	3R_10426188_SNP [dm3] 3R_14600466_SNP [dm6]	G	A	1.492e^-4	0.999	INTRON stumps
2R	13524099	2R_13524099_SNP [dm3] 2R_17636594_SNP [dm6]	G	A	1.493e^-4	0.999	INTRON CG10936
X	11812562	X_11812562_INS [dm3] X_11918529_INS [dm6]	T	TACAGT	1.493e^-4	0.999	DOWNSTREAM CR43157 INTRON CR32661
3L	8765104	3L_8765104_SNP [dm3] 3L_8772004_SNP [dm6]	T	G	1.500e^-4	0.999	INTRON Fhos
2L	17198262	2L_17198262_INS [dm3] 2L_17198262_INS [dm6]	T	TCAGTCG	1.511e^-4	0.999	INTRON beat-IIIc	TF binding site mE1_TFBS_zfh1
2L	21038011	2L_21038011_SNP [dm3] 2L_21038011_SNP [dm6]	G	A	1.531e^-4	0.999	INTRON CG42238	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3R	22822233	3R_22822233_SNP [dm3] 3R_26996511_SNP [dm6]	T	C	1.532e^-4	0.999	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
2R	15248685	2R_15248685_SNP [dm3] 2R_19361180_SNP [dm6]	C	G	1.541e^-4	0.999	SYNONYMOUS_CODING CG11961
2L	8548036	2L_8548036_SNP [dm3] 2L_8548036_SNP [dm6]	T	C	1.544e^-4	0.999	INTRON Sema-1a
2L	374169	2L_374169_SNP [dm3] 2L_374169_SNP [dm6]	T	C	1.544e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17002092	2R_17002092_SNP [dm3] 2R_21114587_SNP [dm6]	G	A	1.566e^-4	0.999	INTRON ktub
2L	19324621	2L_19324621_SNP [dm3] 2L_19324621_SNP [dm6]	A	G	1.578e^-4	0.999	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5646935	2L_5646935_SNP [dm3] 2L_5646935_SNP [dm6]	A	T	1.579e^-4	0.999	INTRON CG31646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21377729	3R_21377729_SNP [dm3] 3R_25552007_SNP [dm6]	A	T	1.598e^-4	0.999	INTRON msi
2R	7123470	2R_7123470_SNP [dm3] 2R_11235965_SNP [dm6]	T	G	1.601e^-4	0.999	DOWNSTREAM CG13217 & 1 other INTRON CG34223
2L	6401830	2L_6401830_SNP [dm3] 2L_6401830_SNP [dm6]	C	A	1.611e^-4	0.999	INTRON CG42368
3R	22814601	3R_22814601_SNP [dm3] 3R_26988879_SNP [dm6]	A	G	1.615e^-4	0.999	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3R	26156491	3R_26156491_SNP [dm3] 3R_30330769_SNP [dm6]	G	A	1.623e^-4	0.999	INTRON hdc
2L	848341	2L_848341_SNP [dm3] 2L_848341_SNP [dm6]	C	A	1.623e^-4	0.999	INTRON drongo	TF binding site mE1_TFBS_sens
2R	19379751	2R_19379751_SNP [dm3] 2R_23492228_SNP [dm6]	T	G	1.623e^-4	0.999	DOWNSTREAM CG43795 INTERGENIC
2R	18182229	2R_18182229_SNP [dm3] 2R_22294724_SNP [dm6]	T	G	1.643e^-4	0.999	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5604683	X_5604683_SNP [dm3] X_5710650_SNP [dm6]	A	G	1.647e^-4	0.999	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5614754	2L_5614754_SNP [dm3] 2L_5614754_SNP [dm6]	G	T	1.654e^-4	0.999	UPSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	8760238	3L_8760238_SNP [dm3] 3L_8767138_SNP [dm6]	G	C	1.663e^-4	0.999	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8760309	3L_8760309_SNP [dm3] 3L_8767209_SNP [dm6]	C	A	1.663e^-4	0.999	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	524524	2L_524524_SNP [dm3] 2L_524524_SNP [dm6]	C	T	1.675e^-4	0.999	INTRON ush	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	11806368	2R_11806368_SNP [dm3] 2R_15918863_SNP [dm6]	T	G	1.676e^-4	0.999	INTRON sli	TF binding site mE1_TFBS_HSA
3L	633839	3L_633839_SNP [dm3] 3L_633839_SNP [dm6]	G	T	1.683e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1020216	2R_1020216_SNP [dm3] 2R_5132711_SNP [dm6]	G	T	1.685e^-4	0.999	INTERGENIC	transposable element FlyBase
2L	2418348	2L_2418348_SNP [dm3] 2L_2418348_SNP [dm6]	G	T	1.686e^-4	0.999	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
2L	8895446	2L_8895446_SNP [dm3] 2L_8895446_SNP [dm6]	A	G	1.689e^-4	0.999	INTERGENIC
2L	10601264	2L_10601264_SNP [dm3] 2L_10601264_SNP [dm6]	T	C	1.703e^-4	0.999	INTRON Trim9
3R	10653605	3R_10653605_SNP [dm3] 3R_14827883_SNP [dm6]	G	A	1.704e^-4	0.999	INTRON btsz	TF binding site mE1_TFBS_cad
3L	12394399	3L_12394399_SNP [dm3] 3L_12401299_SNP [dm6]	C	T	1.718e^-4	0.999	SYNONYMOUS_CODING Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17107286	2L_17107286_SNP [dm3] 2L_17107286_SNP [dm6]	T	C	1.720e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18385734	3R_18385734_SNP [dm3] 3R_22560012_SNP [dm6]	T	C	1.722e^-4	0.999	SYNONYMOUS_CODING CG5278
3L	5781169	3L_5781169_SNP [dm3] 3L_5788069_SNP [dm6]	C	T	1.727e^-4	0.999	INTERGENIC
2R	17319296	2R_17319296_SNP [dm3] 2R_21431791_SNP [dm6]	A	G	1.727e^-4	0.999	INTRON Sdc
3L	8765226	3L_8765226_SNP [dm3] 3L_8772126_SNP [dm6]	C	A	1.733e^-4	0.999	INTRON Fhos
3L	6060241	3L_6060241_SNP [dm3] 3L_6067141_SNP [dm6]	C	A	1.758e^-4	0.999	INTRON CG42269
2R	17851613	2R_17851613_DEL [dm3] 2R_21964108_DEL [dm6]	ACTTCAACCCA...	A	1.758e^-4	0.999	UPSTREAM ppk9 INTERGENIC
2L	10288522	2L_10288522_SNP [dm3] 2L_10288522_SNP [dm6]	A	C	1.761e^-4	0.999	INTRON CG5604
2R	17397117	2R_17397117_SNP [dm3] 2R_21509612_SNP [dm6]	A	G	1.763e^-4	0.999	INTRON MESK2
3L	6681698	3L_6681698_INS [dm3] 3L_6688598_INS [dm6]	T	TT	1.780e^-4	0.999	DOWNSTREAM SP1173 INTERGENIC
2L	7960489	2L_7960489_SNP [dm3] 2L_7960489_SNP [dm6]	T	A	1.798e^-4	0.999	INTRON Snoo
2L	3782294	2L_3782294_SNP [dm3] 2L_3782294_SNP [dm6]	T	C	1.799e^-4	0.999	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2091239	3L_2091239_SNP [dm3] 3L_2091239_SNP [dm6]	G	C	1.810e^-4	0.999	INTRON sls	TF binding site mE1_TFBS_HSA
3L	6490243	3L_6490243_DEL [dm3] 3L_6497143_DEL [dm6]	TCATT	T	1.810e^-4	0.999	INTRON sfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2R	17851774	2R_17851774_SNP [dm3] 2R_21964269_SNP [dm6]	G	A	1.817e^-4	0.999	NON_SYNONYMOUS_CODING ppk9	TF binding site mE1_TFBS_chinmo
2L	6615120	2L_6615120_SNP [dm3] 2L_6615120_SNP [dm6]	C	T	1.825e^-4	0.999	INTRON CG11050
X	18873324	X_18873324_SNP [dm3] X_18979291_SNP [dm6]	A	T	1.839e^-4	0.999	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25335678	3R_25335678_SNP [dm3] 3R_29509956_SNP [dm6]	A	C	1.842e^-4	0.999	INTERGENIC
3L	18099195	3L_18099195_SNP [dm3] 3L_18106095_SNP [dm6]	A	T	1.847e^-4	0.999	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	19775289	3R_19775289_SNP [dm3] 3R_23949567_SNP [dm6]	G	C	1.857e^-4	0.999	INTERGENIC
3L	632990	3L_632990_SNP [dm3] 3L_632990_SNP [dm6]	C	T	1.858e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12484428	3L_12484428_SNP [dm3] 3L_12491328_SNP [dm6]	A	C	1.865e^-4	0.999	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	4825199	2L_4825199_SNP [dm3] 2L_4825199_SNP [dm6]	C	G	1.866e^-4	0.999	INTRON CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	1.868e^-4	0.999	INTERGENIC
2R	7755962	2R_7755962_SNP [dm3] 2R_11868457_SNP [dm6]	C	T	1.873e^-4	0.999	SYNONYMOUS_CODING CG13185 DOWNSTREAM CR42532	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14324019	3R_14324019_SNP [dm3] 3R_18498297_SNP [dm6]	G	A	1.875e^-4	0.999	INTRON fru
2R	14749312	2R_14749312_SNP [dm3] 2R_18861807_SNP [dm6]	A	G	1.877e^-4	0.999	SYNONYMOUS_CODING Jheh3
3L	15071301	3L_15071301_SNP [dm3] 3L_15078201_SNP [dm6]	C	T	1.887e^-4	0.999	NON_SYNONYMOUS_CODING Or71a INTRON cp309	TF binding site mE1_TFBS_sens
2L	8615529	2L_8615529_SNP [dm3] 2L_8615529_SNP [dm6]	T	G	1.897e^-4	0.999	INTRON Sema-1a
3R	22141863	3R_22141863_SNP [dm3] 3R_26316141_SNP [dm6]	A	T	1.898e^-4	0.999	INTERGENIC
2L	9551090	2L_9551090_SNP [dm3] 2L_9551090_SNP [dm6]	G	A	1.903e^-4	0.999	UPSTREAM jp INTRON jp
2R	11803074	2R_11803074_SNP [dm3] 2R_15915569_SNP [dm6]	C	A	1.903e^-4	0.999	UPSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8895476	2L_8895476_SNP [dm3] 2L_8895476_SNP [dm6]	A	C	1.909e^-4	0.999	INTERGENIC
3R	25261079	3R_25261079_SNP [dm3] 3R_29435357_SNP [dm6]	C	T	1.946e^-4	0.999	INTRON Ptp99A
3R	24797461	3R_24797461_SNP [dm3] 3R_28971739_SNP [dm6]	A	G	1.960e^-4	0.999	EXON CR45669
3L	16532066	3L_16532066_DEL [dm3] 3L_16538966_DEL [dm6]	CA	C	1.991e^-4	0.999	INTRON CG43373
2R	19526286	2R_19526286_SNP [dm3] 2R_23638763_SNP [dm6]	T	C	1.992e^-4	0.999	INTRON retn EXON CR45153	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5926074	3L_5926074_SNP [dm3] 3L_5932974_SNP [dm6]	C	A	1.997e^-4	0.999	UPSTREAM Rcc1 DOWNSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	5926130	3L_5926130_SNP [dm3] 3L_5933030_SNP [dm6]	C	A	1.997e^-4	0.999	UPSTREAM Rcc1 DOWNSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	18607705	3R_18607705_SNP [dm3] 3R_22781983_SNP [dm6]	T	G	1.999e^-4	0.999	UTR_5_PRIME CG7029 UPSTREAM CR43654 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	17552097	X_17552097_SNP [dm3] X_17658064_SNP [dm6]	C	A	2.012e^-4	0.999	INTRON beta-Spec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18016259	3L_18016259_SNP [dm3] 3L_18023159_SNP [dm6]	C	T	2.022e^-4	0.999	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	729974	2L_729974_SNP [dm3] 2L_729974_SNP [dm6]	G	C	2.022e^-4	0.999	SYNONYMOUS_CODING Hsp60B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20773279	2L_20773279_INS [dm3] 2L_20773279_INS [dm6]	T	TGGAATCTAGATGTGAGCGA...	2.043e^-4	0.999	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18147224	3L_18147224_SNP [dm3] 3L_18154124_SNP [dm6]	G	C	2.050e^-4	0.999	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21025323	2L_21025323_SNP [dm3] 2L_21025323_SNP [dm6]	T	G	2.050e^-4	0.999	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22819966	3R_22819966_SNP [dm3] 3R_26994244_SNP [dm6]	G	A	2.053e^-4	0.999	UPSTREAM TwdlC INTERGENIC
2L	17196350	2L_17196350_SNP [dm3] 2L_17196350_SNP [dm6]	G	C	2.056e^-4	0.999	INTRON beat-IIIc
2L	1436393	2L_1436393_SNP [dm3] 2L_1436393_SNP [dm6]	A	C	2.064e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17606838	3L_17606838_SNP [dm3] 3L_17613738_SNP [dm6]	C	T	2.064e^-4	0.999	INTRON Eip74EF	TF binding site BDTNP1_TFBS_z
3L	7231158	3L_7231158_SNP [dm3] 3L_7238058_SNP [dm6]	T	C	2.072e^-4	0.999	SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1025356	2R_1025356_SNP [dm3] 2R_5137851_SNP [dm6]	T	C	2.101e^-4	0.999	INTERGENIC	transposable element FlyBase
3L	631672	3L_631672_SNP [dm3] 3L_631672_SNP [dm6]	G	T	2.104e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs
2L	587302	2L_587302_SNP [dm3] 2L_587302_SNP [dm6]	C	T	2.116e^-4	0.999	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25729846	3R_25729846_SNP [dm3] 3R_29904124_SNP [dm6]	G	T	2.118e^-4	0.999	UPSTREAM CG15517 DOWNSTREAM CG31038 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16915308	2R_16915308_SNP [dm3] 2R_21027803_SNP [dm6]	A	C	2.132e^-4	0.999	INTERGENIC
2L	3470408	2L_3470408_SNP [dm3] 2L_3470408_SNP [dm6]	C	T	2.132e^-4	0.999	SYNONYMOUS_CODING CG31776 UPSTREAM CG3238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19346622	2R_19346622_SNP [dm3] 2R_23459099_SNP [dm6]	C	G	2.141e^-4	0.999	UPSTREAM skpF INTRON CG43795
2L	15516868	2L_15516868_SNP [dm3] 2L_15516868_SNP [dm6]	T	A	2.158e^-4	0.999	UPSTREAM CR44864 INTERGENIC
2L	4825367	2L_4825367_SNP [dm3] 2L_4825367_SNP [dm6]	G	A	2.163e^-4	0.999	INTRON CG15628
2L	4825370	2L_4825370_MNP [dm3] 2L_4825370_MNP [dm6]	CTC	TCA	2.163e^-4	0.999	INTRON CG15628
3L	16282346	3L_16282346_SNP [dm3] 3L_16289246_SNP [dm6]	T	C	2.165e^-4	0.999	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
X	16772221	X_16772221_SNP [dm3] X_16878188_SNP [dm6]	T	A	2.169e^-4	0.999	INTERGENIC
3L	12759525	3L_12759525_SNP [dm3] 3L_12766425_SNP [dm6]	T	G	2.169e^-4	0.999	SYNONYMOUS_CODING CG32113
2L	6026092	2L_6026092_SNP [dm3] 2L_6026092_SNP [dm6]	A	T	2.170e^-4	0.999	INTRON CG9109
2L	17107054	2L_17107054_SNP [dm3] 2L_17107054_SNP [dm6]	A	C	2.182e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9933035	2L_9933035_SNP [dm3] 2L_9933035_SNP [dm6]	T	G	2.188e^-4	0.999	INTRON Cpr30F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6914606	2R_6914606_SNP [dm3] 2R_11027101_SNP [dm6]	A	G	2.192e^-4	0.999	INTRON luna
3L	8765256	3L_8765256_SNP [dm3] 3L_8772156_SNP [dm6]	A	G	2.207e^-4	0.999	INTRON Fhos
2L	20975954	2L_20975954_SNP [dm3] 2L_20975954_SNP [dm6]	G	A	2.227e^-4	0.999	INTRON CG42238
X	11068903	X_11068903_SNP [dm3] X_11174870_SNP [dm6]	G	C	2.230e^-4	0.999	INTERGENIC
3L	16532158	3L_16532158_SNP [dm3] 3L_16539058_SNP [dm6]	C	G	2.235e^-4	0.999	INTRON CG43373
3L	2425141	3L_2425141_SNP [dm3] 3L_2425141_SNP [dm6]	A	T	2.237e^-4	0.999	INTRON CG45186
3L	2158566	3L_2158566_SNP [dm3] 3L_2158566_SNP [dm6]	G	A	2.242e^-4	0.999	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17278153	2R_17278153_SNP [dm3] 2R_21390648_SNP [dm6]	G	T	2.242e^-4	0.999	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
2R	18439728	2R_18439728_SNP [dm3] 2R_22552223_SNP [dm6]	T	G	2.243e^-4	0.999	DOWNSTREAM CG6018 INTRON px
2L	15516527	2L_15516527_SNP [dm3] 2L_15516527_SNP [dm6]	G	C	2.244e^-4	0.999	EXON CR44864
2L	3870360	2L_3870360_SNP [dm3] 2L_3870360_SNP [dm6]	A	G	2.244e^-4	0.999	SYNONYMOUS_CODING Cep97 DOWNSTREAM CG31957	TF binding site mE1_TFBS_sens
2L	21025141	2L_21025141_SNP [dm3] 2L_21025141_SNP [dm6]	A	G	2.253e^-4	0.999	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20369899	2L_20369899_SNP [dm3] 2L_20369899_SNP [dm6]	T	A	2.259e^-4	0.999	INTERGENIC
3L	7608763	3L_7608763_SNP [dm3] 3L_7615663_SNP [dm6]	T	C	2.261e^-4	0.999	INTRON CG33275
2L	9213205	2L_9213205_SNP [dm3] 2L_9213205_SNP [dm6]	T	A	2.264e^-4	0.999	INTRON tai
2R	12133566	2R_12133566_SNP [dm3] 2R_16246061_SNP [dm6]	G	C	2.274e^-4	0.999	INTRON CngA	TF binding site mE1_TFBS_chinmo
2L	6401831	2L_6401831_SNP [dm3] 2L_6401831_SNP [dm6]	C	A	2.274e^-4	0.999	INTRON CG42368
2R	18967929	2R_18967929_SNP [dm3] 2R_23080406_SNP [dm6]	C	G	2.287e^-4	0.999	UPSTREAM Gr59a & 1 other INTERGENIC
3L	8752145	3L_8752145_SNP [dm3] 3L_8759045_SNP [dm6]	G	T	2.288e^-4	0.999	INTRON Fhos
3R	19633070	3R_19633070_SNP [dm3] 3R_23807348_SNP [dm6]	G	A	2.303e^-4	0.999	SYNONYMOUS_CODING CG33111 DOWNSTREAM eIF4G2 INTRON CG34355
X	5604874	X_5604874_SNP [dm3] X_5710841_SNP [dm6]	A	G	2.306e^-4	0.999	SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ftz_f1
3R	10808355	3R_10808355_SNP [dm3] 3R_14982633_SNP [dm6]	A	G	2.322e^-4	0.999	INTERGENIC
X	5358880	X_5358880_SNP [dm3] X_5464847_SNP [dm6]	G	A	2.327e^-4	0.999	UTR_5_PRIME SPR INTRON SPR
X	16456123	X_16456123_SNP [dm3] X_16562090_SNP [dm6]	A	G	2.338e^-4	0.999	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2344831	3L_2344831_INS [dm3] 3L_2344831_INS [dm6]	T	TGCA	2.345e^-4	0.999	UTR_3_PRIME MsR1
3L	16433602	3L_16433602_SNP [dm3] 3L_16440502_SNP [dm6]	T	A	2.346e^-4	0.999	INTRON CG33158 & 1 other
2R	18439693	2R_18439693_SNP [dm3] 2R_22552188_SNP [dm6]	A	T	2.351e^-4	0.999	DOWNSTREAM CG6018 INTRON px
2R	18439695	2R_18439695_SNP [dm3] 2R_22552190_SNP [dm6]	T	C	2.351e^-4	0.999	DOWNSTREAM CG6018 INTRON px
2R	18439700	2R_18439700_SNP [dm3] 2R_22552195_SNP [dm6]	C	G	2.351e^-4	0.999	DOWNSTREAM CG6018 INTRON px
3R	9451873	3R_9451873_SNP [dm3] 3R_13626151_SNP [dm6]	T	A	2.357e^-4	0.999	INTERGENIC
3R	9907627	3R_9907627_SNP [dm3] 3R_14081905_SNP [dm6]	T	A	2.357e^-4	0.999	UTR_3_PRIME foxo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11246554	2L_11246554_INS [dm3] 2L_11246554_INS [dm6]	T	TT	2.358e^-4	0.999	INTRON ab	TF binding site mE1_TFBS_chinmo
3R	4518568	3R_4518568_SNP [dm3] 3R_8692846_SNP [dm6]	C	G	2.363e^-4	0.999	NON_SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8446950	2R_8446950_SNP [dm3] 2R_12559445_SNP [dm6]	G	T	2.371e^-4	0.999	INTRON fra
2R	17864180	2R_17864180_SNP [dm3] 2R_21976675_SNP [dm6]	T	G	2.384e^-4	0.999	NON_SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
2R	17864187	2R_17864187_SNP [dm3] 2R_21976682_SNP [dm6]	G	A	2.384e^-4	0.999	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
2R	19793574	2R_19793574_SNP [dm3] 2R_23906051_SNP [dm6]	C	T	2.384e^-4	0.999	DOWNSTREAM CG13562 INTRON Nap1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_jumu mE1_TFBS_sens
2L	17259688	2L_17259688_SNP [dm3] 2L_17259688_SNP [dm6]	T	C	2.389e^-4	0.999	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3L	17618547	3L_17618547_SNP [dm3] 3L_17625447_SNP [dm6]	C	T	2.392e^-4	0.999	INTRON CG7510	TF binding site mE1_TFBS_inv
2R	1352713	2R_1352713_SNP [dm3] 2R_5465208_SNP [dm6]	G	C	2.395e^-4	0.999	INTERGENIC	transposable element FlyBase
3L	17606188	3L_17606188_SNP [dm3] 3L_17613088_SNP [dm6]	T	A	2.401e^-4	0.999	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18146775	3L_18146775_SNP [dm3] 3L_18153675_SNP [dm6]	A	G	2.402e^-4	0.999	UTR_3_PRIME CG7330 DOWNSTREAM CG7330
2L	21031753	2L_21031753_SNP [dm3] 2L_21031753_SNP [dm6]	G	A	2.406e^-4	0.999	INTRON CG42238
3R	21362256	3R_21362256_DEL [dm3] 3R_25536534_DEL [dm6]	CG	T	2.406e^-4	0.999	INTRON msi
X	16456275	X_16456275_SNP [dm3] X_16562242_SNP [dm6]	G	T	2.423e^-4	0.999	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12400738	X_12400738_SNP [dm3] X_12506705_SNP [dm6]	C	T	2.425e^-4	0.999	INTRON CG2556
X	13437059	X_13437059_SNP [dm3] X_13543026_SNP [dm6]	A	C	2.429e^-4	0.999	UPSTREAM Cpr12A INTERGENIC
2L	14307547	2L_14307547_SNP [dm3] 2L_14307547_SNP [dm6]	A	T	2.432e^-4	0.999	INTRON wb
2L	561588	2L_561588_SNP [dm3] 2L_561588_SNP [dm6]	C	A	2.452e^-4	0.999	NON_SYNONYMOUS_CODING CG11835	TF binding site mE1_TFBS_chinmo
2R	1058094	2R_1058094_SNP [dm3] 2R_5170589_SNP [dm6]	T	G	2.475e^-4	0.999	INTERGENIC	transposable element FlyBase
3R	16166844	3R_16166844_SNP [dm3] 3R_20341122_SNP [dm6]	G	A	2.491e^-4	0.999	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17034157	3R_17034157_SNP [dm3] 3R_21208435_SNP [dm6]	C	G	2.491e^-4	0.999	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3L	4367595	3L_4367595_SNP [dm3] 3L_4367595_SNP [dm6]	T	A	2.524e^-4	0.999	UPSTREAM CG11342 DOWNSTREAM DopEcR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15844062	2R_15844062_SNP [dm3] 2R_19956557_SNP [dm6]	C	T	2.532e^-4	0.999	INTRON CG44623
2L	17259080	2L_17259080_SNP [dm3] 2L_17259080_SNP [dm6]	C	T	2.534e^-4	0.999	INTRON beat-IIIc
2R	14128811	2R_14128811_SNP [dm3] 2R_18241306_SNP [dm6]	C	A	2.548e^-4	0.999	INTERGENIC
2L	14307492	2L_14307492_SNP [dm3] 2L_14307492_SNP [dm6]	C	A	2.549e^-4	0.999	INTRON wb
2R	7032754	2R_7032754_SNP [dm3] 2R_11145249_SNP [dm6]	G	C	2.553e^-4	0.999	INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9778381	2L_9778381_SNP [dm3] 2L_9778381_SNP [dm6]	G	A	2.561e^-4	0.999	INTERGENIC
2L	3397176	2L_3397176_SNP [dm3] 2L_3397176_SNP [dm6]	T	C	2.563e^-4	0.999	UPSTREAM CG34175 DOWNSTREAM CR44792 INTERGENIC
3L	15677031	3L_15677031_DEL [dm3] 3L_15683931_DEL [dm6]	TATTC	T	2.571e^-4	0.999	UTR_5_PRIME pgant8 UPSTREAM CG7579
2L	14307654	2L_14307654_SNP [dm3] 2L_14307654_SNP [dm6]	T	G	2.576e^-4	0.999	INTRON wb
3R	21362233	3R_21362233_SNP [dm3] 3R_25536511_SNP [dm6]	T	A	2.584e^-4	0.999	INTRON msi
X	5358881	X_5358881_SNP [dm3] X_5464848_SNP [dm6]	C	G	2.604e^-4	0.999	UTR_5_PRIME SPR INTRON SPR
2R	10324237	2R_10324237_SNP [dm3] 2R_14436732_SNP [dm6]	G	A	2.605e^-4	0.999	INTRON Oaz
2R	10527690	2R_10527690_SNP [dm3] 2R_14640185_SNP [dm6]	C	T	2.610e^-4	0.999	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21059302	3R_21059302_SNP [dm3] 3R_25233580_SNP [dm6]	T	C	2.614e^-4	0.999	DOWNSTREAM CG10420 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8878092	2L_8878092_SNP [dm3] 2L_8878092_SNP [dm6]	T	G	2.634e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12907562	2R_12907562_SNP [dm3] 2R_17020057_SNP [dm6]	T	A	2.641e^-4	0.999	UTR_5_PRIME Ark UPSTREAM CG8963	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17308884	2R_17308884_SNP [dm3] 2R_21421379_SNP [dm6]	A	G	2.641e^-4	0.999	INTRON Sdc
2R	12223392	2R_12223392_SNP [dm3] 2R_16335887_SNP [dm6]	T	A	2.651e^-4	0.999	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6114337	2L_6114337_SNP [dm3] 2L_6114337_SNP [dm6]	T	C	2.668e^-4	0.999	INTRON stai
3L	6681684	3L_6681684_SNP [dm3] 3L_6688584_SNP [dm6]	C	A	2.668e^-4	0.999	DOWNSTREAM SP1173 INTERGENIC
3R	22785894	3R_22785894_SNP [dm3] 3R_26960172_SNP [dm6]	A	T	2.669e^-4	0.999	DOWNSTREAM Tsp97E INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17871618	2R_17871618_INS [dm3] 2R_21984113_INS [dm6]	G	GGG	2.669e^-4	0.999	INTERGENIC
X	12355441	X_12355441_SNP [dm3] X_12461408_SNP [dm6]	T	C	2.670e^-4	0.999	INTRON Rab40
2L	6125988	2L_6125988_SNP [dm3] 2L_6125988_SNP [dm6]	T	G	2.678e^-4	0.999	NON_SYNONYMOUS_CODING WDR79 DOWNSTREAM Arpc4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16166816	3R_16166816_SNP [dm3] 3R_20341094_SNP [dm6]	T	C	2.682e^-4	0.999	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9795911	2L_9795911_INS [dm3] 2L_9795911_INS [dm6]	C	CC	2.687e^-4	0.999	UTR_3_PRIME nAChRalpha6
2L	14690941	2L_14690941_SNP [dm3] 2L_14690941_SNP [dm6]	T	A	2.692e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16964464	2R_16964464_SNP [dm3] 2R_21076959_SNP [dm6]	T	A	2.692e^-4	0.999	UTR_5_PRIME Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25491331	3R_25491331_INS [dm3] 3R_29665609_INS [dm6]	T	TACTATATATATTA...	2.707e^-4	0.999	INTRON ppk21
3R	25491336	3R_25491336_DEL [dm3] 3R_29665614_DEL [dm6]	ACACCATGG	A	2.707e^-4	0.999	INTRON ppk21
X	21358211	X_21358211_SNP [dm3] X_21487184_SNP [dm6]	T	G	2.713e^-4	0.999	INTERGENIC
2L	14141339	2L_14141339_SNP [dm3] 2L_14141339_SNP [dm6]	T	A	2.719e^-4	0.999	INTRON CG17341
2R	6290819	2R_6290819_SNP [dm3] 2R_10403314_SNP [dm6]	T	C	2.723e^-4	0.999	INTRON CG42732
X	11068970	X_11068970_SNP [dm3] X_11174937_SNP [dm6]	A	C	2.727e^-4	0.999	INTERGENIC
2L	4599176	2L_4599176_SNP [dm3] 2L_4599176_SNP [dm6]	G	T	2.736e^-4	0.999	INTRON dp	TF binding site mE1_TFBS_sbb
3L	16236764	3L_16236764_SNP [dm3] 3L_16243664_SNP [dm6]	A	G	2.748e^-4	0.999	INTERGENIC
3R	14340069	3R_14340069_SNP [dm3] 3R_18514347_SNP [dm6]	T	C	2.752e^-4	0.999	UTR_5_PRIME fru INTRON fru
X	11240204	X_11240204_SNP [dm3] X_11346171_SNP [dm6]	G	A	2.755e^-4	0.999	INTRON CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10477113	2R_10477113_SNP [dm3] 2R_14589608_SNP [dm6]	T	C	2.761e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18439732	2R_18439732_INS [dm3] 2R_22552227_INS [dm6]	A	ATGC	2.764e^-4	0.999	DOWNSTREAM CG6018 INTRON px
3L	10268504	3L_10268504_SNP [dm3] 3L_10275404_SNP [dm6]	G	A	2.766e^-4	0.999	DOWNSTREAM Or67d INTERGENIC
2L	16630732	2L_16630732_SNP [dm3] 2L_16630732_SNP [dm6]	C	T	2.767e^-4	0.999	INTRON CG42389
2R	10527496	2R_10527496_SNP [dm3] 2R_14639991_SNP [dm6]	G	A	2.772e^-4	0.999	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	16915322	2R_16915322_SNP [dm3] 2R_21027817_SNP [dm6]	T	C	2.781e^-4	0.999	INTERGENIC
2R	6816934	2R_6816934_SNP [dm3] 2R_10929429_SNP [dm6]	T	C	2.787e^-4	0.999	INTERGENIC
3R	23079012	3R_23079012_SNP [dm3] 3R_27253290_SNP [dm6]	G	T	2.790e^-4	0.999	UPSTREAM TfIIA-L & 1 other INTRON TfIIA-L	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	1098471	3L_1098471_SNP [dm3] 3L_1098471_SNP [dm6]	C	A	2.799e^-4	0.999	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9897372	3R_9897372_SNP [dm3] 3R_14071650_SNP [dm6]	A	G	2.814e^-4	0.999	INTRON foxo
3L	9260545	3L_9260545_SNP [dm3] 3L_9267445_SNP [dm6]	A	G	2.814e^-4	0.999	INTRON GluRIB
2R	19632579	2R_19632579_SNP [dm3] 2R_23745056_SNP [dm6]	G	A	2.815e^-4	0.999	INTRON egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_sens
X	11068933	X_11068933_SNP [dm3] X_11174900_SNP [dm6]	T	A	2.815e^-4	0.999	INTERGENIC
2R	9215872	2R_9215872_SNP [dm3] 2R_13328367_SNP [dm6]	A	C	2.816e^-4	0.999	DOWNSTREAM CR44206 INTERGENIC
3R	10225284	3R_10225284_SNP [dm3] 3R_14399562_SNP [dm6]	A	T	2.823e^-4	0.999	INTRON cv-c	TF binding site mE1_TFBS_Trl
2R	19379732	2R_19379732_SNP [dm3] 2R_23492209_SNP [dm6]	G	A	2.828e^-4	0.999	DOWNSTREAM CG43795 INTERGENIC
3R	24883464	3R_24883464_SNP [dm3] 3R_29057742_SNP [dm6]	T	C	2.832e^-4	0.999	NON_SYNONYMOUS_CODING Sirt7
2R	13221507	2R_13221507_SNP [dm3] 2R_17334002_SNP [dm6]	T	C	2.842e^-4	0.999	INTRON mbl
3L	4367617	3L_4367617_SNP [dm3] 3L_4367617_SNP [dm6]	C	T	2.846e^-4	0.999	UPSTREAM CG11342 DOWNSTREAM DopEcR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6737757	3L_6737757_SNP [dm3] 3L_6744657_SNP [dm6]	G	A	2.855e^-4	0.999	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	10323852	2R_10323852_SNP [dm3] 2R_14436347_SNP [dm6]	T	G	2.855e^-4	0.999	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	3153118	2L_3153118_SNP [dm3] 2L_3153118_SNP [dm6]	C	A	2.862e^-4	0.999	UPSTREAM Mad INTRON Mad
2R	11932543	2R_11932543_SNP [dm3] 2R_16045038_SNP [dm6]	A	C	2.864e^-4	0.999	INTRON SP2353
2L	8989622	2L_8989622_SNP [dm3] 2L_8989622_SNP [dm6]	T	A	2.864e^-4	0.999	UPSTREAM rost INTERGENIC
2L	2418412	2L_2418412_SNP [dm3] 2L_2418412_SNP [dm6]	T	G	2.868e^-4	0.999	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
3R	3504863	3R_3504863_SNP [dm3] 3R_7679141_SNP [dm6]	T	G	2.869e^-4	0.999	INTRON Nlg1
2R	16593225	2R_16593225_SNP [dm3] 2R_20705720_SNP [dm6]	T	A	2.879e^-4	0.999	INTRON dpr
2R	8821310	2R_8821310_SNP [dm3] 2R_12933805_SNP [dm6]	C	T	2.884e^-4	0.999	UTR_5_PRIME CG17019 DOWNSTREAM CG13322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11932710	2R_11932710_SNP [dm3] 2R_16045205_SNP [dm6]	T	A	2.891e^-4	0.999	INTRON SP2353
2R	17278131	2R_17278131_SNP [dm3] 2R_21390626_SNP [dm6]	T	C	2.917e^-4	0.999	INTRON Acox57D-d	TF binding site mE1_TFBS_cad
2L	2353151	2L_2353151_SNP [dm3] 2L_2353151_SNP [dm6]	C	T	2.923e^-4	0.999	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7017267	3L_7017267_SNP [dm3] 3L_7024167_SNP [dm6]	A	C	2.926e^-4	0.999	INTRON Mp
X	16601400	X_16601400_SNP [dm3] X_16707367_SNP [dm6]	C	G	2.930e^-4	0.999	UPSTREAM CG9672 INTRON CG4678
3L	16757995	3L_16757995_DEL [dm3] 3L_16764895_DEL [dm6]	TAT	T	2.932e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8610379	2R_8610379_SNP [dm3] 2R_12722874_SNP [dm6]	A	G	2.933e^-4	0.999	UTR_5_PRIME CG42663
2L	9783591	2L_9783591_SNP [dm3] 2L_9783591_SNP [dm6]	A	T	2.938e^-4	0.999	INTRON IP3K1	TF binding site mE1_TFBS_sens
3R	22072036	3R_22072036_SNP [dm3] 3R_26246314_SNP [dm6]	C	A	2.942e^-4	0.999	INTRON CR42745
3R	3635681	3R_3635681_SNP [dm3] 3R_7809959_SNP [dm6]	A	G	2.943e^-4	0.999	UTR_5_PRIME CG2993 UPSTREAM CG31472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	21031531	2L_21031531_INS [dm3] 2L_21031531_INS [dm6]	A	AAACTCTTTTA...	2.946e^-4	0.999	INTRON CG42238
2L	1345219	2L_1345219_SNP [dm3] 2L_1345219_SNP [dm6]	T	C	2.947e^-4	0.999	DOWNSTREAM CR45005 & 2 others INTERGENIC
2R	18439692	2R_18439692_SNP [dm3] 2R_22552187_SNP [dm6]	G	T	2.950e^-4	0.999	DOWNSTREAM CG6018 INTRON px
2L	3791874	2L_3791874_SNP [dm3] 2L_3791874_SNP [dm6]	G	A	2.951e^-4	0.999	INTRON CG3921
3R	22546982	3R_22546982_SNP [dm3] 3R_26721260_SNP [dm6]	G	A	2.960e^-4	0.999	SYNONYMOUS_CODING CG6420	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	5358964	X_5358964_SNP [dm3] X_5464931_SNP [dm6]	A	C	2.962e^-4	0.999	UTR_5_PRIME SPR INTRON SPR
3R	15493591	3R_15493591_SNP [dm3] 3R_19667869_SNP [dm6]	T	A	2.975e^-4	0.999	INTRON CG7432
2L	14153039	2L_14153039_SNP [dm3] 2L_14153039_SNP [dm6]	C	A	2.979e^-4	0.999	INTRON CG17341
2R	11930811	2R_11930811_SNP [dm3] 2R_16043306_SNP [dm6]	T	A	2.981e^-4	0.999	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_cad
2R	14270525	2R_14270525_SNP [dm3] 2R_18383020_SNP [dm6]	G	C	2.982e^-4	0.999	SYNONYMOUS_CODING IM23 UPSTREAM IM1
3R	24860256	3R_24860256_SNP [dm3] 3R_29034534_SNP [dm6]	G	T	2.991e^-4	0.999	UPSTREAM Cpsf100 & 1 other DOWNSTREAM CR45044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15583768	2L_15583768_SNP [dm3] 2L_15583768_SNP [dm6]	G	T	3.001e^-4	0.999	UTR_3_PRIME kek3 DOWNSTREAM kek3
2L	20618781	2L_20618781_SNP [dm3] 2L_20618781_SNP [dm6]	G	T	3.007e^-4	0.999	UPSTREAM mir-288 INTRON CR44909
2L	3502891	2L_3502891_SNP [dm3] 2L_3502891_SNP [dm6]	G	A	3.009e^-4	0.999	SYNONYMOUS_CODING tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11068890	X_11068890_SNP [dm3] X_11174857_SNP [dm6]	A	G	3.011e^-4	0.999	INTERGENIC
2R	16793008	2R_16793008_SNP [dm3] 2R_20905503_SNP [dm6]	A	G	3.015e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5641967	2L_5641967_SNP [dm3] 2L_5641967_SNP [dm6]	A	G	3.021e^-4	0.999	UPSTREAM mir-963 & 1 other DOWNSTREAM mir-959 & 3 others INTRON CG31646
3L	12474838	3L_12474838_SNP [dm3] 3L_12481738_SNP [dm6]	T	C	3.024e^-4	0.999	UPSTREAM CG33725 INTRON CG10663
2R	17695785	2R_17695785_SNP [dm3] 2R_21808280_SNP [dm6]	C	G	3.026e^-4	0.999	INTERGENIC
2L	4013714	2L_4013714_SNP [dm3] 2L_4013714_SNP [dm6]	A	G	3.027e^-4	0.999	INTERGENIC
2R	4180299	2R_4180299_SNP [dm3] 2R_8292794_SNP [dm6]	G	T	3.032e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9886390	3L_9886390_SNP [dm3] 3L_9893290_SNP [dm6]	C	T	3.035e^-4	0.999	UTR_3_PRIME CalpB & 2 others DOWNSTREAM CG14164 & 1 other
2R	17385212	2R_17385212_SNP [dm3] 2R_21497707_SNP [dm6]	C	T	3.037e^-4	0.999	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	987861	2L_987861_SNP [dm3] 2L_987861_SNP [dm6]	G	A	3.046e^-4	0.999	DOWNSTREAM CR44801 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16456205	X_16456205_SNP [dm3] X_16562172_SNP [dm6]	A	G	3.055e^-4	0.999	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11657427	2R_11657427_INS [dm3] 2R_15769922_INS [dm6]	T	TT	3.055e^-4	0.999	INTRON Zasp52	TF binding site mE1_TFBS_cad
3L	1467387	3L_1467387_SNP [dm3] 3L_1467387_SNP [dm6]	G	A	3.056e^-4	0.999	UTR_3_PRIME rho INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9599779	3R_9599779_SNP [dm3] 3R_13774057_SNP [dm6]	G	A	3.057e^-4	0.999	INTRON CG9297
2R	18439711	2R_18439711_SNP [dm3] 2R_22552206_SNP [dm6]	G	C	3.063e^-4	0.999	DOWNSTREAM CG6018 INTRON px
2L	17259672	2L_17259672_SNP [dm3] 2L_17259672_SNP [dm6]	T	A	3.090e^-4	0.999	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
X	11069005	X_11069005_SNP [dm3] X_11174972_SNP [dm6]	G	A	3.090e^-4	0.999	INTERGENIC
2R	17308924	2R_17308924_SNP [dm3] 2R_21421419_SNP [dm6]	G	A	3.091e^-4	0.999	INTRON Sdc
3L	3927386	3L_3927386_SNP [dm3] 3L_3927386_SNP [dm6]	C	G	3.094e^-4	0.999	INTRON Eip63F-1
2R	18439698	2R_18439698_INS [dm3] 2R_22552193_INS [dm6]	A	AA	3.101e^-4	0.999	DOWNSTREAM CG6018 INTRON px
3R	22807505	3R_22807505_SNP [dm3] 3R_26981783_SNP [dm6]	T	A	3.111e^-4	0.999	INTRON CG14253
2R	9218571	2R_9218571_SNP [dm3] 2R_13331066_SNP [dm6]	G	A	3.124e^-4	0.999	INTRON CR44206	TF binding site mE1_TFBS_cad
X	11695650	X_11695650_SNP [dm3] X_11801617_SNP [dm6]	A	G	3.127e^-4	0.999	DOWNSTREAM Hsc70-3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	21434039	X_21434039_DEL [dm3] X_21563012_DEL [dm6]	AACATGAGCA	A	3.133e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17942342	2R_17942342_SNP [dm3] 2R_22054837_SNP [dm6]	A	G	3.134e^-4	0.999	INTERGENIC
2R	11041779	2R_11041779_SNP [dm3] 2R_15154274_SNP [dm6]	A	G	3.155e^-4	0.999	INTERGENIC
2L	6230080	2L_6230080_SNP [dm3] 2L_6230080_SNP [dm6]	T	A	3.180e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14068526	3L_14068526_SNP [dm3] 3L_14075426_SNP [dm6]	G	A	3.180e^-4	0.999	SYNONYMOUS_CODING Pex1 UPSTREAM btl	TF binding site BDTNP1_TFBS_dl
3L	12295192	3L_12295192_SNP [dm3] 3L_12302092_SNP [dm6]	T	G	3.180e^-4	0.999	DOWNSTREAM CR44551 & 1 other INTERGENIC
2R	13497858	2R_13497858_SNP [dm3] 2R_17610353_SNP [dm6]	A	C	3.183e^-4	0.999	INTRON CG10936
2L	21062287	2L_21062287_SNP [dm3] 2L_21062287_SNP [dm6]	C	T	3.186e^-4	0.999	NON_SYNONYMOUS_CODING CG9265
3L	16282340	3L_16282340_SNP [dm3] 3L_16289240_SNP [dm6]	T	G	3.199e^-4	0.999	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
3L	6840220	3L_6840220_SNP [dm3] 3L_6847120_SNP [dm6]	C	T	3.199e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	1022401	2R_1022401_SNP [dm3] 2R_5134896_SNP [dm6]	G	A	3.201e^-4	0.999	INTERGENIC	transposable element FlyBase
2L	12278461	2L_12278461_SNP [dm3] 2L_12278461_SNP [dm6]	A	C	3.207e^-4	0.999	INTRON aret
2L	10554628	2L_10554628_SNP [dm3] 2L_10554628_SNP [dm6]	C	A	3.210e^-4	0.999	INTRON Trim9	TF binding site mE1_TFBS_cad
2L	19321041	2L_19321041_SNP [dm3] 2L_19321041_SNP [dm6]	G	A	3.215e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18559231	2L_18559231_SNP [dm3] 2L_18559231_SNP [dm6]	C	T	3.215e^-4	0.999	INTRON Pde11	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15740167	2L_15740167_INS [dm3] 2L_15740167_INS [dm6]	T	TGT	3.215e^-4	0.999	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11849218	2R_11849218_SNP [dm3] 2R_15961713_SNP [dm6]	A	T	3.218e^-4	0.999	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7292825	2R_7292825_SNP [dm3] 2R_11405320_SNP [dm6]	T	C	3.239e^-4	0.999	UPSTREAM CG7759 & 1 other DOWNSTREAM tRNA:CR45106 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17648272	2L_17648272_SNP [dm3] 2L_17648272_SNP [dm6]	A	C	3.242e^-4	0.999	UTR_3_PRIME CadN
2R	15940819	2R_15940819_SNP [dm3] 2R_20053314_SNP [dm6]	C	T	3.244e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	16433688	3L_16433688_SNP [dm3] 3L_16440588_SNP [dm6]	A	G	3.250e^-4	0.999	INTRON CG33158 & 1 other
3R	24517930	3R_24517930_SNP [dm3] 3R_28692208_SNP [dm6]	C	T	3.260e^-4	0.999	INTRON CG9990
2R	7001233	2R_7001233_SNP [dm3] 2R_11113728_SNP [dm6]	T	C	3.267e^-4	0.999	INTRON luna
2R	10371485	2R_10371485_SNP [dm3] 2R_14483980_SNP [dm6]	C	T	3.269e^-4	0.999	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	633747	3L_633747_SNP [dm3] 3L_633747_SNP [dm6]	G	T	3.273e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7943692	2L_7943692_INS [dm3] 2L_7943692_INS [dm6]	T	TTGAACTTTGAATT...	3.283e^-4	0.999	INTRON Snoo
2L	7856556	2L_7856556_SNP [dm3] 2L_7856556_SNP [dm6]	G	A	3.288e^-4	0.999	UPSTREAM lectin-28C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4367337	3L_4367337_SNP [dm3] 3L_4367337_SNP [dm6]	T	G	3.291e^-4	0.999	SYNONYMOUS_CODING CG11342 DOWNSTREAM DopEcR & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11523007	3R_11523007_SNP [dm3] 3R_15697285_SNP [dm6]	T	C	3.294e^-4	0.999	UPSTREAM CR45636 DOWNSTREAM CG5399 EXON CR45635
3R	22145702	3R_22145702_SNP [dm3] 3R_26319980_SNP [dm6]	A	C	3.297e^-4	0.999	INTRON CG33970
2L	17107052	2L_17107052_SNP [dm3] 2L_17107052_SNP [dm6]	C	G	3.298e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4440454	3L_4440454_SNP [dm3] 3L_4440454_SNP [dm6]	T	A	3.299e^-4	0.999	INTERGENIC
2L	20958231	2L_20958231_SNP [dm3] 2L_20958231_SNP [dm6]	T	A	3.306e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11068927	X_11068927_SNP [dm3] X_11174894_SNP [dm6]	T	C	3.310e^-4	0.999	INTERGENIC
2L	3549543	2L_3549543_SNP [dm3] 2L_3549543_SNP [dm6]	A	G	3.320e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	11180322	3L_11180322_SNP [dm3] 3L_11187222_SNP [dm6]	A	T	3.323e^-4	0.999	INTRON GlcAT-P
2L	19775630	2L_19775630_INS [dm3] 2L_19775630_INS [dm6]	A	AA	3.323e^-4	0.999	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
3L	8200675	3L_8200675_SNP [dm3] 3L_8207575_SNP [dm6]	C	T	3.328e^-4	0.999	INTERGENIC
3R	19431888	3R_19431888_SNP [dm3] 3R_23606166_SNP [dm6]	T	G	3.328e^-4	0.999	UTR_3_PRIME CG31145 UPSTREAM CG10184 DOWNSTREAM CG31145
2R	12085768	2R_12085768_SNP [dm3] 2R_16198263_SNP [dm6]	C	T	3.328e^-4	0.999	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17206508	2R_17206508_SNP [dm3] 2R_21319003_SNP [dm6]	G	A	3.337e^-4	0.999	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655
X	296047	X_296047_SNP [dm3] X_402014_SNP [dm6]	C	T	3.343e^-4	0.999	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7404236	2L_7404236_SNP [dm3] 2L_7404236_SNP [dm6]	C	A	3.347e^-4	0.999	SYNONYMOUS_CODING CG5171 UPSTREAM CG5177
3L	635438	3L_635438_SNP [dm3] 3L_635438_SNP [dm6]	A	G	3.365e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1601351	2R_1601351_SNP [dm3] 2R_5713846_SNP [dm6]	C	T	3.365e^-4	0.999	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15757541	3R_15757541_SNP [dm3] 3R_19931819_SNP [dm6]	G	A	3.369e^-4	0.999	UTR_3_PRIME mira DOWNSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22815652	3R_22815652_SNP [dm3] 3R_26989930_SNP [dm6]	A	C	3.370e^-4	0.999	UPSTREAM CG31076 INTERGENIC
3R	7693848	3R_7693848_SNP [dm3] 3R_11868126_SNP [dm6]	G	T	3.372e^-4	0.999	INTRON CG6959
3R	19642961	3R_19642961_SNP [dm3] 3R_23817239_SNP [dm6]	T	A	3.378e^-4	0.999	INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17705738	2R_17705738_SNP [dm3] 2R_21818233_SNP [dm6]	G	A	3.379e^-4	0.999	INTERGENIC
2R	14637941	2R_14637941_SNP [dm3] 2R_18750436_SNP [dm6]	C	A	3.395e^-4	0.999	INTRON Hs3st-A
2L	7484725	2L_7484725_INS [dm3] 2L_7484725_INS [dm6]	T	TT	3.405e^-4	0.999	INTRON Ziz	TF binding site mE1_TFBS_inv
3R	22040256	3R_22040256_SNP [dm3] 3R_26214534_SNP [dm6]	C	T	3.406e^-4	0.999	INTERGENIC
2R	19194602	2R_19194602_SNP [dm3] 2R_23307079_SNP [dm6]	T	G	3.413e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8112165	3R_8112165_SNP [dm3] 3R_12286443_SNP [dm6]	A	G	3.415e^-4	0.999	INTRON svp
3R	22069529	3R_22069529_SNP [dm3] 3R_26243807_SNP [dm6]	G	C	3.426e^-4	0.999	INTRON CR42745
3R	11125622	3R_11125622_SNP [dm3] 3R_15299900_SNP [dm6]	G	A	3.428e^-4	0.999	INTRON Tm1
2L	22009862	2L_22009862_SNP [dm3] 2L_22009862_SNP [dm6]	T	C	3.430e^-4	0.999	INTERGENIC
2R	11422675	2R_11422675_SNP [dm3] 2R_15535170_SNP [dm6]	G	C	3.433e^-4	0.999	SPLICE_SITE_REGION CG30471 UTR_5_PRIME CG30471
3L	18430272	3L_18430272_SNP [dm3] 3L_18437172_SNP [dm6]	A	G	3.446e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_Kr
X	6716423	X_6716423_SNP [dm3] X_6822390_SNP [dm6]	C	T	3.449e^-4	0.999	SYNONYMOUS_CODING CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8893227	2L_8893227_SNP [dm3] 2L_8893227_SNP [dm6]	C	T	3.450e^-4	0.999	INTERGENIC
3L	3334573	3L_3334573_SNP [dm3] 3L_3334573_SNP [dm6]	G	A	3.453e^-4	0.999	UTR_5_PRIME CG14969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3294483	X_3294483_SNP [dm3] X_3400450_SNP [dm6]	A	G	3.459e^-4	0.999	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_hb
3L	1711382	3L_1711382_SNP [dm3] 3L_1711382_SNP [dm6]	T	A	3.459e^-4	0.999	INTRON CG7991
2R	13022203	2R_13022203_SNP [dm3] 2R_17134698_SNP [dm6]	G	C	3.465e^-4	0.999	NON_SYNONYMOUS_CODING CG11400 UPSTREAM CR44391 DOWNSTREAM Acp54A1
2R	10502278	2R_10502278_SNP [dm3] 2R_14614773_SNP [dm6]	C	T	3.472e^-4	0.999	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17522206	3R_17522206_DEL [dm3] 3R_21696484_DEL [dm6]	TCTT	T	3.473e^-4	0.999	INTRON CG31176
3R	11523003	3R_11523003_INS [dm3] 3R_15697281_INS [dm6]	A	ATCCATTCATATACAAA...	3.476e^-4	0.999	UPSTREAM CR45636 DOWNSTREAM CG5399 EXON CR45635
3R	22811333	3R_22811333_SNP [dm3] 3R_26985611_SNP [dm6]	C	T	3.477e^-4	0.999	UTR_3_PRIME CG14253 DOWNSTREAM CG31075	TF binding site mE1_TFBS_cad
2L	14012487	2L_14012487_SNP [dm3] 2L_14012487_SNP [dm6]	G	A	3.483e^-4	0.999	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15903592	X_15903592_SNP [dm3] X_16009559_SNP [dm6]	G	C	3.486e^-4	0.999	NON_SYNONYMOUS_CODING Muc14A DOWNSTREAM CG12698
3R	11311410	3R_11311410_SNP [dm3] 3R_15485688_SNP [dm6]	G	A	3.489e^-4	0.999	UPSTREAM CG5205 & 1 other DOWNSTREAM Rh6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	10233039	2R_10233039_SNP [dm3] 2R_14345534_SNP [dm6]	A	G	3.496e^-4	0.999	INTRON Shroom
2L	3869958	2L_3869958_SNP [dm3] 2L_3869958_SNP [dm6]	C	T	3.512e^-4	0.999	SYNONYMOUS_CODING Cep97 UPSTREAM Cep97
3L	632993	3L_632993_SNP [dm3] 3L_632993_SNP [dm6]	C	G	3.514e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19925911	2R_19925911_SNP [dm3] 2R_24038388_SNP [dm6]	C	T	3.517e^-4	0.999	SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7960498	2L_7960498_SNP [dm3] 2L_7960498_SNP [dm6]	T	C	3.519e^-4	0.999	INTRON Snoo
2R	17568274	2R_17568274_SNP [dm3] 2R_21680769_SNP [dm6]	C	T	3.525e^-4	0.999	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_chinmo
3R	4511652	3R_4511652_SNP [dm3] 3R_8685930_SNP [dm6]	G	A	3.530e^-4	0.999	UPSTREAM CG44227 INTRON CR44937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6190746	2L_6190746_SNP [dm3] 2L_6190746_SNP [dm6]	C	A	3.545e^-4	0.999	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14307653	2L_14307653_SNP [dm3] 2L_14307653_SNP [dm6]	A	G	3.548e^-4	0.999	INTRON wb
2L	848406	2L_848406_SNP [dm3] 2L_848406_SNP [dm6]	C	T	3.551e^-4	0.999	INTRON drongo	TF binding site mE1_TFBS_sens
3R	21054631	3R_21054631_SNP [dm3] 3R_25228909_SNP [dm6]	C	T	3.556e^-4	0.999	INTRON Cad96Cb
3L	12822094	3L_12822094_SNP [dm3] 3L_12828994_SNP [dm6]	A	T	3.562e^-4	0.999	INTRON CG10960
3L	2331965	3L_2331965_SNP [dm3] 3L_2331965_SNP [dm6]	G	C	3.570e^-4	0.999	INTRON MsR1
2R	11932563	2R_11932563_SNP [dm3] 2R_16045058_SNP [dm6]	T	C	3.574e^-4	0.999	INTRON SP2353
2L	6872682	2L_6872682_SNP [dm3] 2L_6872682_SNP [dm6]	T	C	3.576e^-4	0.999	UPSTREAM CR44914 & 1 other INTERGENIC
2L	3144389	2L_3144389_SNP [dm3] 2L_3144389_SNP [dm6]	G	C	3.576e^-4	0.999	START_GAINED toc UTR_5_PRIME toc DOWNSTREAM CG12400	TF binding site mE1_TFBS_HSA
3L	11645257	3L_11645257_INS [dm3] 3L_11652157_INS [dm6]	G	GG	3.578e^-4	0.999	INTRON CG32085
3L	2335498	3L_2335498_INS [dm3] 3L_2335498_INS [dm6]	A	AA	3.587e^-4	0.999	INTRON MsR1
X	16456098	X_16456098_SNP [dm3] X_16562065_SNP [dm6]	A	G	3.595e^-4	0.999	UTR_3_PRIME CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8973435	X_8973435_SNP [dm3] X_9079402_SNP [dm6]	T	C	3.598e^-4	0.999	SYNONYMOUS_CODING CG7246 UPSTREAM CG44325	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	21358147	X_21358147_SNP [dm3] X_21487120_SNP [dm6]	C	T	3.605e^-4	0.999	INTERGENIC
3R	19489914	3R_19489914_SNP [dm3] 3R_23664192_SNP [dm6]	T	C	3.606e^-4	0.999	INTRON CG31145
2L	17014719	2L_17014719_SNP [dm3] 2L_17014719_SNP [dm6]	T	C	3.608e^-4	0.999	UPSTREAM CG6304 INTERGENIC
2R	19379742	2R_19379742_SNP [dm3] 2R_23492219_SNP [dm6]	A	T	3.612e^-4	0.999	DOWNSTREAM CG43795 INTERGENIC
2R	11688880	2R_11688880_SNP [dm3] 2R_15801375_SNP [dm6]	C	T	3.615e^-4	0.999	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	15334687	2R_15334687_SNP [dm3] 2R_19447182_SNP [dm6]	C	T	3.619e^-4	0.999	UPSTREAM EloC DOWNSTREAM betaTub56D INTERGENIC
3R	24909784	3R_24909784_SNP [dm3] 3R_29084062_SNP [dm6]	T	A	3.622e^-4	0.999	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22087545	3R_22087545_SNP [dm3] 3R_26261823_SNP [dm6]	T	C	3.625e^-4	0.999	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
2L	4187266	2L_4187266_SNP [dm3] 2L_4187266_SNP [dm6]	G	A	3.625e^-4	0.999	NON_SYNONYMOUS_CODING CG31961 UPSTREAM lectin-24Db	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2418398	2L_2418398_SNP [dm3] 2L_2418398_SNP [dm6]	T	A	3.634e^-4	0.999	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
2L	21034599	2L_21034599_SNP [dm3] 2L_21034599_SNP [dm6]	A	G	3.640e^-4	0.999	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21358341	X_21358341_SNP [dm3] X_21487314_SNP [dm6]	T	C	3.648e^-4	0.999	INTERGENIC
3L	8767005	3L_8767005_SNP [dm3] 3L_8773905_SNP [dm6]	C	T	3.651e^-4	0.999	INTRON Fhos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	15889836	2L_15889836_SNP [dm3] 2L_15889836_SNP [dm6]	A	G	3.653e^-4	0.999	INTRON Tep1	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	13721836	3R_13721836_SNP [dm3] 3R_17896114_SNP [dm6]	A	G	3.655e^-4	0.999	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10320108	2R_10320108_SNP [dm3] 2R_14432603_SNP [dm6]	T	C	3.658e^-4	0.999	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12612883	2R_12612883_DEL [dm3] 2R_16725378_DEL [dm6]	TCTGGGT	T	3.660e^-4	0.999	INTRON CG30463
2L	3485434	2L_3485434_SNP [dm3] 2L_3485434_SNP [dm6]	A	T	3.668e^-4	0.999	INTRON CG15414
3L	633953	3L_633953_SNP [dm3] 3L_633953_SNP [dm6]	C	T	3.670e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7272806	3L_7272806_SNP [dm3] 3L_7279706_SNP [dm6]	G	C	3.677e^-4	0.999	INTRON unc-13-4A
2L	13141844	2L_13141844_SNP [dm3] 2L_13141844_SNP [dm6]	C	T	3.680e^-4	0.999	DOWNSTREAM CG9928 INTERGENIC
2R	17206661	2R_17206661_SNP [dm3] 2R_21319156_SNP [dm6]	T	C	3.686e^-4	0.999	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655 DOWNSTREAM CG30394
3L	17672000	3L_17672000_SNP [dm3] 3L_17678900_SNP [dm6]	T	G	3.696e^-4	0.999	INTRON CG34251
2R	3436454	2R_3436454_SNP [dm3] 2R_7548949_SNP [dm6]	G	T	3.698e^-4	0.999	INTRON Corin
2L	8894525	2L_8894525_SNP [dm3] 2L_8894525_SNP [dm6]	G	T	3.700e^-4	0.999	INTERGENIC
3L	3697749	3L_3697749_SNP [dm3] 3L_3697749_SNP [dm6]	C	T	3.703e^-4	0.999	INTERGENIC
3L	16282567	3L_16282567_SNP [dm3] 3L_16289467_SNP [dm6]	A	T	3.705e^-4	0.999	DOWNSTREAM CG13045 INTERGENIC	transposable element FlyBase
2L	7897440	2L_7897440_DEL [dm3] 2L_7897440_DEL [dm6]	TTACTTTGT	T	3.708e^-4	0.999	INTRON Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6790598	2R_6790598_INS [dm3] 2R_10903093_INS [dm6]	A	AACA	3.723e^-4	0.999	UPSTREAM CG12943 INTERGENIC
3L	4373925	3L_4373925_SNP [dm3] 3L_4373925_SNP [dm6]	C	T	3.725e^-4	0.999	INTRON DopEcR
2R	11932596	2R_11932596_SNP [dm3] 2R_16045091_SNP [dm6]	C	T	3.725e^-4	0.999	SYNONYMOUS_CODING SP2353
2L	5903507	2L_5903507_INS [dm3] 2L_5903507_INS [dm6]	A	AAACTCAAAGGTTGCCTGAG...	3.732e^-4	0.999	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18439726	2R_18439726_INS [dm3] 2R_22552221_INS [dm6]	T	TAATTTA	3.738e^-4	0.999	DOWNSTREAM CG6018 INTRON px
2R	805661	2R_805661_SNP [dm3] 2R_4918156_SNP [dm6]	T	G	3.738e^-4	0.999	INTRON Ir41a
3L	12474883	3L_12474883_SNP [dm3] 3L_12481783_SNP [dm6]	G	T	3.739e^-4	0.999	UPSTREAM CG33725 INTRON CG10663
2R	12634902	2R_12634902_SNP [dm3] 2R_16747397_SNP [dm6]	C	T	3.747e^-4	0.999	UPSTREAM CG15617 DOWNSTREAM Acp53C14a INTERGENIC
2R	8780147	2R_8780147_SNP [dm3] 2R_12892642_SNP [dm6]	T	C	3.756e^-4	0.999	INTRON vg
2R	13873083	2R_13873083_SNP [dm3] 2R_17985578_SNP [dm6]	G	A	3.759e^-4	0.999	INTRON dpr13
2L	9415394	2L_9415394_SNP [dm3] 2L_9415394_SNP [dm6]	A	C	3.778e^-4	0.999	UPSTREAM Shawl INTERGENIC
3L	15677260	3L_15677260_SNP [dm3] 3L_15684160_SNP [dm6]	A	C	3.785e^-4	0.999	SYNONYMOUS_CODING pgant8 UPSTREAM CG7579
X	11068962	X_11068962_SNP [dm3] X_11174929_SNP [dm6]	T	C	3.785e^-4	0.999	INTERGENIC
2L	12278481	2L_12278481_SNP [dm3] 2L_12278481_SNP [dm6]	C	T	3.789e^-4	0.999	INTRON aret
3R	22813413	3R_22813413_SNP [dm3] 3R_26987691_SNP [dm6]	C	T	3.790e^-4	0.999	UPSTREAM CG31075 INTRON CG31075
2L	581314	2L_581314_SNP [dm3] 2L_581314_SNP [dm6]	T	C	3.791e^-4	0.999	INTERGENIC
2L	3186924	2L_3186924_SNP [dm3] 2L_3186924_SNP [dm6]	T	A	3.795e^-4	0.999	INTRON CG34393
3R	13618022	3R_13618022_SNP [dm3] 3R_17792300_SNP [dm6]	C	T	3.796e^-4	0.999	INTRON CG43102
2L	5165656	2L_5165656_DEL [dm3] 2L_5165656_DEL [dm6]	CAAC	C	3.800e^-4	0.999	CODON_DELETION Msp300 INTRON Msp300
3R	15419479	3R_15419479_SNP [dm3] 3R_19593757_SNP [dm6]	C	T	3.801e^-4	0.999	INTRON Dys
3L	20064288	3L_20064288_SNP [dm3] 3L_20071188_SNP [dm6]	C	T	3.814e^-4	0.999	INTRON sNPF-R
2R	16592262	2R_16592262_SNP [dm3] 2R_20704757_SNP [dm6]	A	G	3.816e^-4	0.999	INTRON dpr
X	14762238	X_14762238_SNP [dm3] X_14868205_SNP [dm6]	T	G	3.825e^-4	0.999	INTRON Flo2 & 1 other
2L	5802662	2L_5802662_SNP [dm3] 2L_5802662_SNP [dm6]	G	T	3.830e^-4	0.999	SYNONYMOUS_CODING CG7239 UPSTREAM CG14005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14164544	2L_14164544_SNP [dm3] 2L_14164544_SNP [dm6]	T	G	3.832e^-4	0.999	INTRON CG43333
2R	19403881	2R_19403881_SNP [dm3] 2R_23516358_SNP [dm6]	T	C	3.837e^-4	0.999	INTERGENIC
3R	22856874	3R_22856874_SNP [dm3] 3R_27031152_SNP [dm6]	T	G	3.847e^-4	0.999	INTRON RYa-R
3L	1743242	3L_1743242_SNP [dm3] 3L_1743242_SNP [dm6]	T	C	3.848e^-4	0.999	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad
2R	6063832	2R_6063832_SNP [dm3] 2R_10176327_SNP [dm6]	G	A	3.849e^-4	0.999	INTRON KCNQ
3R	8189124	3R_8189124_SNP [dm3] 3R_12363402_SNP [dm6]	T	A	3.861e^-4	0.999	DOWNSTREAM Tim17a1 & 2 others INTERGENIC
3L	16282417	3L_16282417_SNP [dm3] 3L_16289317_SNP [dm6]	T	C	3.871e^-4	0.999	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
3L	17618531	3L_17618531_SNP [dm3] 3L_17625431_SNP [dm6]	C	G	3.873e^-4	0.999	INTRON CG7510	TF binding site mE1_TFBS_inv
3L	3688868	3L_3688868_SNP [dm3] 3L_3688868_SNP [dm6]	C	T	3.874e^-4	0.999	EXON CR43484
3L	11430865	3L_11430865_SNP [dm3] 3L_11437765_SNP [dm6]	C	T	3.880e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17422193	2L_17422193_SNP [dm3] 2L_17422193_SNP [dm6]	A	C	3.880e^-4	0.999	INTRON Dif
2L	21806515	2L_21806515_SNP [dm3] 2L_21806515_SNP [dm6]	G	A	3.884e^-4	0.999	INTERGENIC
2R	1396342	2R_1396342_SNP [dm3] 2R_5508837_SNP [dm6]	C	A	3.886e^-4	0.999	UPSTREAM TpnC4 INTRON CG30438
3L	10007634	3L_10007634_SNP [dm3] 3L_10014534_SNP [dm6]	A	C	3.892e^-4	0.999	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	10167504	2L_10167504_DEL [dm3] 2L_10167504_DEL [dm6]	TT	T	3.899e^-4	0.999	INTRON CG44153
2L	10393507	2L_10393507_SNP [dm3] 2L_10393507_SNP [dm6]	T	C	3.900e^-4	0.999	DOWNSTREAM da & 1 other INTERGENIC
3R	17896478	3R_17896478_SNP [dm3] 3R_22070756_SNP [dm6]	G	T	3.901e^-4	0.999	INTRON how	TF binding site mE1_TFBS_HSA
2R	19930367	2R_19930367_SNP [dm3] 2R_24042844_SNP [dm6]	T	C	3.902e^-4	0.999	SYNONYMOUS_CODING IntS1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6916448	2R_6916448_SNP [dm3] 2R_11028943_SNP [dm6]	T	G	3.904e^-4	0.999	INTRON luna
2L	11170789	2L_11170789_SNP [dm3] 2L_11170789_SNP [dm6]	A	T	3.908e^-4	0.999	UTR_5_PRIME Ca-beta DOWNSTREAM Vm32E INTRON Ca-beta	regulatory region REDfly_CRMs
3R	22814910	3R_22814910_SNP [dm3] 3R_26989188_SNP [dm6]	T	A	3.910e^-4	0.999	UPSTREAM CG31075 INTRON CG31076
2R	19677092	2R_19677092_SNP [dm3] 2R_23789569_SNP [dm6]	G	A	3.914e^-4	0.999	INTRON CG9850
2R	17207025	2R_17207025_SNP [dm3] 2R_21319520_SNP [dm6]	G	T	3.920e^-4	0.999	UTR_3_PRIME CG33655 & 1 other DOWNSTREAM CG30394
2L	3919857	2L_3919857_SNP [dm3] 2L_3919857_SNP [dm6]	G	A	3.926e^-4	0.999	INTRON fred
2R	13227029	2R_13227029_SNP [dm3] 2R_17339524_SNP [dm6]	G	A	3.934e^-4	0.999	INTRON mbl
X	8065711	X_8065711_SNP [dm3] X_8171678_SNP [dm6]	A	G	3.938e^-4	0.999	SYNONYMOUS_CODING slpr
2R	10323801	2R_10323801_SNP [dm3] 2R_14436296_SNP [dm6]	C	G	3.945e^-4	0.999	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	11644975	3L_11644975_SNP [dm3] 3L_11651875_SNP [dm6]	C	T	3.945e^-4	0.999	INTRON CG32085
3R	19776006	3R_19776006_SNP [dm3] 3R_23950284_SNP [dm6]	C	T	3.951e^-4	0.999	INTERGENIC
3L	17610240	3L_17610240_SNP [dm3] 3L_17617140_SNP [dm6]	A	T	3.959e^-4	0.999	INTRON Eip74EF
X	19860861	X_19860861_SNP [dm3] X_19966828_SNP [dm6]	C	A	3.965e^-4	0.999	SYNONYMOUS_CODING Nep3
2R	7795119	2R_7795119_SNP [dm3] 2R_11907614_SNP [dm6]	A	T	3.969e^-4	0.999	INTRON CG13183
2R	18520773	2R_18520773_SNP [dm3] 2R_22633268_SNP [dm6]	T	G	3.971e^-4	0.999	UTR_3_PRIME CG33143 DOWNSTREAM CG17807
2L	17638986	2L_17638986_SNP [dm3] 2L_17638986_SNP [dm6]	A	T	3.972e^-4	0.999	INTERGENIC
3L	7280489	3L_7280489_SNP [dm3] 3L_7287389_SNP [dm6]	G	T	3.973e^-4	0.999	INTRON unc-13-4A
2L	17216625	2L_17216625_SNP [dm3] 2L_17216625_SNP [dm6]	C	T	3.976e^-4	0.999	INTRON beat-IIIc
3L	7892374	3L_7892374_SNP [dm3] 3L_7899274_SNP [dm6]	T	A	3.988e^-4	0.999	UTR_5_PRIME pbl INTRON pbl
2R	11804762	2R_11804762_SNP [dm3] 2R_15917257_SNP [dm6]	G	A	3.991e^-4	0.999	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2L	5572785	2L_5572785_SNP [dm3] 2L_5572785_SNP [dm6]	G	T	3.992e^-4	0.999	INTERGENIC
2R	9676201	2R_9676201_SNP [dm3] 2R_13788696_SNP [dm6]	T	G	3.997e^-4	0.999	DOWNSTREAM Cpr50Ca INTERGENIC
3L	8461191	3L_8461191_SNP [dm3] 3L_8468091_SNP [dm6]	T	A	4.023e^-4	0.999	INTRON Gug	TF binding site mE1_TFBS_cad
2R	11936395	2R_11936395_SNP [dm3] 2R_16048890_SNP [dm6]	G	A	4.023e^-4	0.999	SYNONYMOUS_CODING CG8405
2L	19873240	2L_19873240_SNP [dm3] 2L_19873240_SNP [dm6]	C	G	4.024e^-4	0.999	INTRON sick	TF binding site BDTNP1_TFBS_prd
2L	3186792	2L_3186792_SNP [dm3] 2L_3186792_SNP [dm6]	G	C	4.028e^-4	0.999	INTRON CG34393
2R	8821442	2R_8821442_SNP [dm3] 2R_12933937_SNP [dm6]	T	C	4.029e^-4	0.999	UTR_5_PRIME CG17019 DOWNSTREAM CG13322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12278470	2L_12278470_SNP [dm3] 2L_12278470_SNP [dm6]	C	G	4.030e^-4	0.999	INTRON aret
3L	7608662	3L_7608662_SNP [dm3] 3L_7615562_SNP [dm6]	C	T	4.032e^-4	0.999	INTRON CG33275
2L	3297370	2L_3297370_SNP [dm3] 2L_3297370_SNP [dm6]	C	A	4.040e^-4	0.999	SYNONYMOUS_CODING CG9663
3L	9820199	3L_9820199_SNP [dm3] 3L_9827099_SNP [dm6]	G	C	4.051e^-4	0.999	NON_SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_cad
2L	1343257	2L_1343257_SNP [dm3] 2L_1343257_SNP [dm6]	G	A	4.062e^-4	0.999	DOWNSTREAM CG33922 INTERGENIC
3R	25475648	3R_25475648_SNP [dm3] 3R_29649926_SNP [dm6]	C	T	4.064e^-4	0.999	INTRON Dop1R2
3R	26017576	3R_26017576_SNP [dm3] 3R_30191854_SNP [dm6]	A	C	4.080e^-4	0.999	UPSTREAM CG9747 INTERGENIC
2R	16704190	2R_16704190_SNP [dm3] 2R_20816685_SNP [dm6]	A	G	4.081e^-4	0.999	INTERGENIC
3L	12878190	3L_12878190_SNP [dm3] 3L_12885090_SNP [dm6]	G	T	4.084e^-4	0.999	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_inv
3L	16864104	3L_16864104_SNP [dm3] 3L_16871004_SNP [dm6]	A	C	4.088e^-4	0.999	INTRON Lmpt
X	11068944	X_11068944_INS [dm3] X_11174911_INS [dm6]	T	TATAT	4.105e^-4	0.999	INTERGENIC
2L	10601307	2L_10601307_SNP [dm3] 2L_10601307_SNP [dm6]	T	G	4.114e^-4	0.999	INTRON Trim9
2L	21806504	2L_21806504_SNP [dm3] 2L_21806504_SNP [dm6]	C	G	4.116e^-4	0.999	INTERGENIC
2R	5820731	2R_5820731_SNP [dm3] 2R_9933226_SNP [dm6]	T	C	4.117e^-4	0.999	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	8872666	2L_8872666_SNP [dm3] 2L_8872666_SNP [dm6]	G	T	4.121e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9225074	2L_9225074_SNP [dm3] 2L_9225074_SNP [dm6]	C	A	4.131e^-4	0.999	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
X	12355417	X_12355417_SNP [dm3] X_12461384_SNP [dm6]	A	C	4.151e^-4	0.999	INTRON Rab40
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	4.165e^-4	0.999	INTRON Rab40
X	19860840	X_19860840_SNP [dm3] X_19966807_SNP [dm6]	T	C	4.174e^-4	0.999	SYNONYMOUS_CODING Nep3
3L	4440452	3L_4440452_SNP [dm3] 3L_4440452_SNP [dm6]	C	A	4.176e^-4	0.999	INTERGENIC
2L	6229986	2L_6229986_SNP [dm3] 2L_6229986_SNP [dm6]	T	C	4.181e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7944847	2L_7944847_SNP [dm3] 2L_7944847_SNP [dm6]	T	C	4.186e^-4	0.999	INTRON Snoo
3R	13635043	3R_13635043_SNP [dm3] 3R_17809321_SNP [dm6]	T	C	4.188e^-4	0.999	UPSTREAM CG7357 DOWNSTREAM CG18012 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19090928	3L_19090928_SNP [dm3] 3L_19097828_SNP [dm6]	A	T	4.191e^-4	0.999	UPSTREAM CG14079 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	12114104	2R_12114104_DEL [dm3] 2R_16226599_DEL [dm6]	GTG	G	4.197e^-4	0.999	UTR_5_PRIME Tsf3 & 1 other UPSTREAM CG15706 INTRON CG15706
3L	17602317	3L_17602317_SNP [dm3] 3L_17609217_SNP [dm6]	T	A	4.211e^-4	0.999	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	23865381	3R_23865381_SNP [dm3] 3R_28039659_SNP [dm6]	T	G	4.229e^-4	0.999	INTRON CG34362
3L	7357488	3L_7357488_SNP [dm3] 3L_7364388_SNP [dm6]	C	T	4.234e^-4	0.999	DOWNSTREAM Sh3beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3186793	2L_3186793_SNP [dm3] 2L_3186793_SNP [dm6]	C	G	4.251e^-4	0.999	INTRON CG34393
3R	26156688	3R_26156688_SNP [dm3] 3R_30330966_SNP [dm6]	T	G	4.258e^-4	0.999	INTRON hdc
X	6716417	X_6716417_SNP [dm3] X_6822384_SNP [dm6]	G	A	4.260e^-4	0.999	SYNONYMOUS_CODING CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13151787	2L_13151787_SNP [dm3] 2L_13151787_SNP [dm6]	G	A	4.261e^-4	0.999	INTERGENIC
2R	15248610	2R_15248610_SNP [dm3] 2R_19361105_SNP [dm6]	A	C	4.263e^-4	0.999	SYNONYMOUS_CODING CG11961
2R	15248616	2R_15248616_SNP [dm3] 2R_19361111_SNP [dm6]	T	C	4.263e^-4	0.999	SYNONYMOUS_CODING CG11961
2R	1348142	2R_1348142_SNP [dm3] 2R_5460637_SNP [dm6]	T	G	4.265e^-4	0.999	INTERGENIC
2L	14143984	2L_14143984_SNP [dm3] 2L_14143984_SNP [dm6]	A	G	4.268e^-4	0.999	INTRON CG17341
3L	17616954	3L_17616954_SNP [dm3] 3L_17623854_SNP [dm6]	G	A	4.270e^-4	0.999	INTRON CG7510	TF binding site mE1_TFBS_cnc
2L	8897310	2L_8897310_SNP [dm3] 2L_8897310_SNP [dm6]	A	T	4.271e^-4	0.999	INTERGENIC
3L	504867	3L_504867_SNP [dm3] 3L_504867_SNP [dm6]	A	G	4.274e^-4	0.999	INTRON klar
3L	8760263	3L_8760263_DEL [dm3] 3L_8767163_DEL [dm6]	AGCCCAAA	A	4.275e^-4	0.999	INTRON Fhos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21058768	2L_21058768_SNP [dm3] 2L_21058768_SNP [dm6]	A	C	4.293e^-4	0.999	DOWNSTREAM Itgbetanu INTRON CG9265
2L	21613812	2L_21613812_SNP [dm3] 2L_21613812_SNP [dm6]	A	C	4.295e^-4	0.999	DOWNSTREAM CG2201 INTERGENIC	transposable element FlyBase
X	18889079	X_18889079_SNP [dm3] X_18995046_SNP [dm6]	A	C	4.298e^-4	0.999	INTRON CG43759
3L	10635851	3L_10635851_SNP [dm3] 3L_10642751_SNP [dm6]	G	C	4.314e^-4	0.999	NON_SYNONYMOUS_CODING CG14154 UPSTREAM CG14153 INTRON CG32066
2L	17496493	2L_17496493_SNP [dm3] 2L_17496493_SNP [dm6]	C	A	4.320e^-4	0.999	UPSTREAM CR45715 INTRON qua
2L	2418409	2L_2418409_SNP [dm3] 2L_2418409_SNP [dm6]	C	G	4.330e^-4	0.999	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
2L	17422276	2L_17422276_SNP [dm3] 2L_17422276_SNP [dm6]	A	G	4.339e^-4	0.999	INTRON Dif
3R	9708367	3R_9708367_SNP [dm3] 3R_13882645_SNP [dm6]	A	G	4.341e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3618426	3L_3618426_SNP [dm3] 3L_3618426_SNP [dm6]	T	C	4.344e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22809309	3R_22809309_SNP [dm3] 3R_26983587_SNP [dm6]	C	T	4.346e^-4	0.999	INTRON CG14253
3L	6681930	3L_6681930_SNP [dm3] 3L_6688830_SNP [dm6]	G	A	4.347e^-4	0.999	DOWNSTREAM SP1173 INTERGENIC
2R	15834934	2R_15834934_SNP [dm3] 2R_19947429_SNP [dm6]	A	G	4.347e^-4	0.999	NON_SYNONYMOUS_CODING CG30447 UPSTREAM CG42691
2R	19965529	2R_19965529_DEL [dm3] 2R_24078006_DEL [dm6]	AA	A	4.355e^-4	0.999	UTR_3_PRIME Mlp60A DOWNSTREAM CG10339	TF binding site mE1_TFBS_cad
2L	9225462	2L_9225462_SNP [dm3] 2L_9225462_SNP [dm6]	G	C	4.357e^-4	0.999	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3R	3773544	3R_3773544_SNP [dm3] 3R_7947822_SNP [dm6]	T	G	4.358e^-4	0.999	INTRON dsx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11666634	X_11666634_SNP [dm3] X_11772601_SNP [dm6]	G	A	4.359e^-4	0.999	INTRON dy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6112102	2L_6112102_SNP [dm3] 2L_6112102_SNP [dm6]	A	G	4.364e^-4	0.999	INTRON stai
2R	16955054	2R_16955054_SNP [dm3] 2R_21067549_SNP [dm6]	G	A	4.373e^-4	0.999	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2L	21036086	2L_21036086_SNP [dm3] 2L_21036086_SNP [dm6]	C	T	4.378e^-4	0.999	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2645951	3L_2645951_SNP [dm3] 3L_2645951_SNP [dm6]	A	T	4.380e^-4	0.999	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16955055	2R_16955055_SNP [dm3] 2R_21067550_SNP [dm6]	A	T	4.384e^-4	0.999	UPSTREAM Cht4 & 1 other DOWNSTREAM Cht9 INTERGENIC
2L	9415437	2L_9415437_SNP [dm3] 2L_9415437_SNP [dm6]	A	G	4.384e^-4	0.999	UPSTREAM Shawl INTERGENIC
2R	17924105	2R_17924105_SNP [dm3] 2R_22036600_SNP [dm6]	A	C	4.389e^-4	0.999	DOWNSTREAM CG9308 INTRON CG34370
2R	1351463	2R_1351463_SNP [dm3] 2R_5463958_SNP [dm6]	A	C	4.393e^-4	0.999	INTERGENIC
3L	1343830	3L_1343830_SNP [dm3] 3L_1343830_SNP [dm6]	A	T	4.408e^-4	0.999	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
X	12533620	X_12533620_SNP [dm3] X_12639587_SNP [dm6]	C	T	4.418e^-4	0.999	INTRON Tomosyn	TF binding site BDTNP1_TFBS_da
2R	18550922	2R_18550922_SNP [dm3] 2R_22663417_SNP [dm6]	C	A	4.418e^-4	0.999	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2L	19316570	2L_19316570_SNP [dm3] 2L_19316570_SNP [dm6]	C	G	4.421e^-4	0.999	INTERGENIC
2R	11325722	2R_11325722_SNP [dm3] 2R_15438217_SNP [dm6]	A	T	4.435e^-4	0.999	INTRON CG43729	TF binding site BDTNP1_TFBS_hb
2R	19379754	2R_19379754_SNP [dm3] 2R_23492231_SNP [dm6]	C	T	4.436e^-4	0.999	DOWNSTREAM CG43795 INTERGENIC
2L	1946223	2L_1946223_SNP [dm3] 2L_1946223_SNP [dm6]	T	G	4.442e^-4	0.999	UPSTREAM CG15357 INTRON CG33673	regulatory region REDfly_CRMs
2R	16342096	2R_16342096_SNP [dm3] 2R_20454591_SNP [dm6]	G	T	4.447e^-4	0.999	INTRON CG12484
2R	1018154	2R_1018154_SNP [dm3] 2R_5130649_SNP [dm6]	C	T	4.461e^-4	0.999	INTERGENIC	transposable element FlyBase
2R	9969265	2R_9969265_SNP [dm3] 2R_14081760_SNP [dm6]	C	T	4.461e^-4	0.999	INTRON Prosap
2L	20769206	2L_20769206_SNP [dm3] 2L_20769206_SNP [dm6]	T	C	4.467e^-4	0.999	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	11068865	X_11068865_SNP [dm3] X_11174832_SNP [dm6]	C	A	4.472e^-4	0.999	INTERGENIC
X	11068961	X_11068961_SNP [dm3] X_11174928_SNP [dm6]	G	C	4.479e^-4	0.999	INTERGENIC
2L	587301	2L_587301_SNP [dm3] 2L_587301_SNP [dm6]	A	C	4.482e^-4	0.999	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3446127	2L_3446127_SNP [dm3] 2L_3446127_SNP [dm6]	A	G	4.501e^-4	0.999	SYNONYMOUS_CODING CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8896181	2L_8896181_SNP [dm3] 2L_8896181_SNP [dm6]	C	G	4.504e^-4	0.999	INTERGENIC
2L	8889161	2L_8889161_SNP [dm3] 2L_8889161_SNP [dm6]	T	A	4.510e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
X	21500351	X_21500351_SNP [dm3] X_21629324_SNP [dm6]	C	T	4.517e^-4	0.999	UTR_5_PRIME DIP1 INTRON DIP1	TF binding site BDTNP1_TFBS_dl
2L	8895165	2L_8895165_SNP [dm3] 2L_8895165_SNP [dm6]	C	A	4.517e^-4	0.999	INTERGENIC
X	11068958	X_11068958_SNP [dm3] X_11174925_SNP [dm6]	T	C	4.521e^-4	0.999	INTERGENIC
2L	17107278	2L_17107278_SNP [dm3] 2L_17107278_SNP [dm6]	G	A	4.532e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15683717	3R_15683717_SNP [dm3] 3R_19857995_SNP [dm6]	C	T	4.541e^-4	0.999	INTRON Ire1	TF binding site mE1_TFBS_cad
X	5806121	X_5806121_SNP [dm3] X_5912088_SNP [dm6]	C	T	4.548e^-4	0.999	DOWNSTREAM CG12236 & 1 other INTRON CG12236	TF binding site mE1_TFBS_Trl
2R	17515786	2R_17515786_SNP [dm3] 2R_21628281_SNP [dm6]	C	T	4.550e^-4	0.999	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17637701	2L_17637701_SNP [dm3] 2L_17637701_SNP [dm6]	A	T	4.558e^-4	0.999	INTERGENIC
X	11068956	X_11068956_SNP [dm3] X_11174923_SNP [dm6]	A	T	4.559e^-4	0.999	INTERGENIC
2R	13589164	2R_13589164_DEL [dm3] 2R_17701659_DEL [dm6]	CCTC	C	4.569e^-4	0.999	UPSTREAM snoRNA:snR38:54Eb & 4 others DOWNSTREAM snoRNA:U76:54Eb & 3 others INTRON Uhg1
2L	17496485	2L_17496485_SNP [dm3] 2L_17496485_SNP [dm6]	C	A	4.575e^-4	0.999	UPSTREAM CR45715 INTRON qua
3L	12302048	3L_12302048_SNP [dm3] 3L_12308948_SNP [dm6]	G	A	4.585e^-4	0.999	INTERGENIC
X	6393883	X_6393883_SNP [dm3] X_6499850_SNP [dm6]	A	T	4.587e^-4	0.999	INTRON CG42340
2L	17201260	2L_17201260_SNP [dm3] 2L_17201260_SNP [dm6]	G	C	4.609e^-4	0.999	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17004292	3R_17004292_SNP [dm3] 3R_21178570_SNP [dm6]	C	T	4.612e^-4	0.999	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18260426	3R_18260426_INS [dm3] 3R_22434704_INS [dm6]	A	AGA	4.621e^-4	0.999	INTRON CG13847
2L	8991406	2L_8991406_SNP [dm3] 2L_8991406_SNP [dm6]	C	A	4.626e^-4	0.999	UPSTREAM CG9555 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9684685	3R_9684685_SNP [dm3] 3R_13858963_SNP [dm6]	G	C	4.631e^-4	0.999	INTERGENIC
2R	7117012	2R_7117012_SNP [dm3] 2R_11229507_SNP [dm6]	C	T	4.633e^-4	0.999	SYNONYMOUS_CODING metro	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16049394	2R_16049394_SNP [dm3] 2R_20161889_SNP [dm6]	G	T	4.634e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	634107	3L_634107_DEL [dm3] 3L_634107_DEL [dm6]	GTTG	G	4.634e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12458400	3R_12458400_SNP [dm3] 3R_16632678_SNP [dm6]	G	A	4.634e^-4	0.999	SYNONYMOUS_CODING Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20614434	2L_20614434_SNP [dm3] 2L_20614434_SNP [dm6]	C	T	4.638e^-4	0.999	UPSTREAM CG15475 INTRON CR44909
2R	18333794	2R_18333794_SNP [dm3] 2R_22446289_SNP [dm6]	G	T	4.649e^-4	0.999	INTERGENIC
X	16996388	X_16996388_SNP [dm3] X_17102355_SNP [dm6]	A	T	4.651e^-4	0.999	UPSTREAM CG4991 INTRON CG4991
3R	19633372	3R_19633372_SNP [dm3] 3R_23807650_SNP [dm6]	C	A	4.668e^-4	0.999	NON_SYNONYMOUS_CODING CG33111 DOWNSTREAM eIF4G2 INTRON CG34355
2R	18315925	2R_18315925_SNP [dm3] 2R_22428420_SNP [dm6]	T	A	4.680e^-4	0.999	INTRON ppk12
2L	16998183	2L_16998183_SNP [dm3] 2L_16998183_SNP [dm6]	A	C	4.684e^-4	0.999	UPSTREAM CR45356 & 1 other INTERGENIC
2R	17446428	2R_17446428_SNP [dm3] 2R_21558923_SNP [dm6]	G	A	4.694e^-4	0.999	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21050693	3R_21050693_SNP [dm3] 3R_25224971_SNP [dm6]	G	A	4.695e^-4	0.999	SYNONYMOUS_CODING Cad96Cb DOWNSTREAM CG11851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12970790	X_12970790_SNP [dm3] X_13076757_SNP [dm6]	T	C	4.701e^-4	0.999	UTR_3_PRIME rad
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	4.705e^-4	0.999	INTRON Rab40
2R	4680614	2R_4680614_SNP [dm3] 2R_8793109_SNP [dm6]	G	A	4.715e^-4	0.999	SYNONYMOUS_CODING CG8746	TF binding site mE1_TFBS_cad
3L	2532401	3L_2532401_SNP [dm3] 3L_2532401_SNP [dm6]	C	T	4.721e^-4	0.999	INTRON Spn
2L	8889164	2L_8889164_SNP [dm3] 2L_8889164_SNP [dm6]	C	A	4.723e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	1343826	3L_1343826_SNP [dm3] 3L_1343826_SNP [dm6]	T	G	4.723e^-4	0.999	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3L	1343827	3L_1343827_INS [dm3] 3L_1343827_INS [dm6]	G	GCTC	4.723e^-4	0.999	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
X	6965107	X_6965107_INS [dm3] X_7071074_INS [dm6]	A	AA	4.724e^-4	0.999	INTRON CG4607
X	8861451	X_8861451_SNP [dm3] X_8967418_SNP [dm6]	C	T	4.726e^-4	0.999	INTRON rdgA
3R	18432742	3R_18432742_SNP [dm3] 3R_22607020_SNP [dm6]	C	T	4.735e^-4	0.999	UTR_3_PRIME Efa6 INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17198255	2L_17198255_SNP [dm3] 2L_17198255_SNP [dm6]	A	G	4.740e^-4	0.999	INTRON beat-IIIc	TF binding site mE1_TFBS_zfh1
3L	10091390	3L_10091390_SNP [dm3] 3L_10098290_SNP [dm6]	A	G	4.746e^-4	0.999	UPSTREAM CG42825 INTRON dpr6
3R	18260385	3R_18260385_SNP [dm3] 3R_22434663_SNP [dm6]	T	C	4.751e^-4	0.999	INTRON CG13847
2L	9227273	2L_9227273_SNP [dm3] 2L_9227273_SNP [dm6]	G	T	4.757e^-4	0.999	INTRON tai	TF binding site BDTNP1_TFBS_twi
X	11665419	X_11665419_SNP [dm3] X_11771386_SNP [dm6]	T	G	4.761e^-4	0.999	SYNONYMOUS_CODING dy	TF binding site mE1_TFBS_chinmo
3L	15075247	3L_15075247_SNP [dm3] 3L_15082147_SNP [dm6]	C	G	4.769e^-4	0.999	SYNONYMOUS_CODING cp309
3R	26156687	3R_26156687_SNP [dm3] 3R_30330965_SNP [dm6]	C	A	4.778e^-4	0.999	INTRON hdc
3L	4239295	3L_4239295_SNP [dm3] 3L_4239295_SNP [dm6]	A	C	4.781e^-4	0.999	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12472389	3L_12472389_SNP [dm3] 3L_12479289_SNP [dm6]	T	A	4.782e^-4	0.999	INTRON CG10663
2L	10828612	2L_10828612_SNP [dm3] 2L_10828612_SNP [dm6]	C	G	4.794e^-4	0.999	INTRON Nos
2R	13223077	2R_13223077_SNP [dm3] 2R_17335572_SNP [dm6]	G	T	4.810e^-4	0.999	INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	11249539	3R_11249539_SNP [dm3] 3R_15423817_SNP [dm6]	G	A	4.818e^-4	0.999	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21062394	2L_21062394_SNP [dm3] 2L_21062394_SNP [dm6]	A	G	4.822e^-4	0.999	INTRON CG9265
2L	21062409	2L_21062409_SNP [dm3] 2L_21062409_SNP [dm6]	A	C	4.822e^-4	0.999	INTRON CG9265
2R	18439717	2R_18439717_SNP [dm3] 2R_22552212_SNP [dm6]	G	T	4.823e^-4	0.999	DOWNSTREAM CG6018 INTRON px
3L	17610859	3L_17610859_SNP [dm3] 3L_17617759_SNP [dm6]	G	C	4.832e^-4	0.999	INTRON Eip74EF
3L	631742	3L_631742_SNP [dm3] 3L_631742_SNP [dm6]	C	A	4.833e^-4	0.999	EXON CR43334	regulatory region REDfly_CRMs
2L	1452770	2L_1452770_SNP [dm3] 2L_1452770_SNP [dm6]	C	T	4.835e^-4	0.999	INTERGENIC
X	9793728	X_9793728_SNP [dm3] X_9899695_SNP [dm6]	G	A	4.838e^-4	0.999	UPSTREAM CG15249 INTERGENIC
2R	3192372	2R_3192372_SNP [dm3] 2R_7304867_SNP [dm6]	T	C	4.846e^-4	0.999	INTERGENIC
3L	3291955	3L_3291955_SNP [dm3] 3L_3291955_SNP [dm6]	T	G	4.853e^-4	0.999	INTRON CG12009
2R	16122597	2R_16122597_SNP [dm3] 2R_20235092_SNP [dm6]	G	A	4.854e^-4	0.999	NON_SYNONYMOUS_CODING CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
3R	15075230	3R_15075230_SNP [dm3] 3R_19249508_SNP [dm6]	C	G	4.856e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7888874	X_7888874_SNP [dm3] X_7994841_SNP [dm6]	A	C	4.858e^-4	0.999	UPSTREAM Tbh INTERGENIC
3L	16282377	3L_16282377_SNP [dm3] 3L_16289277_SNP [dm6]	T	A	4.863e^-4	0.999	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
3R	9451841	3R_9451841_SNP [dm3] 3R_13626119_SNP [dm6]	G	A	4.869e^-4	0.999	INTERGENIC
2R	16122595	2R_16122595_SNP [dm3] 2R_20235090_SNP [dm6]	A	T	4.871e^-4	0.999	NON_SYNONYMOUS_CODING CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	16122608	2R_16122608_SNP [dm3] 2R_20235103_SNP [dm6]	T	G	4.871e^-4	0.999	SYNONYMOUS_CODING CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
X	7665159	X_7665159_SNP [dm3] X_7771126_SNP [dm6]	C	T	4.874e^-4	0.999	INTERGENIC
2R	17206607	2R_17206607_SNP [dm3] 2R_21319102_SNP [dm6]	A	G	4.879e^-4	0.999	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655 DOWNSTREAM CG30394
3R	9652443	3R_9652443_SNP [dm3] 3R_13826721_SNP [dm6]	A	T	4.888e^-4	0.999	DOWNSTREAM Mst87F INTERGENIC
2L	16550276	2L_16550276_SNP [dm3] 2L_16550276_SNP [dm6]	T	G	4.889e^-4	0.999	UPSTREAM CG5968 INTRON CG42389
2L	14164557	2L_14164557_SNP [dm3] 2L_14164557_SNP [dm6]	T	C	4.892e^-4	0.999	INTRON CG43333
2R	16115436	2R_16115436_SNP [dm3] 2R_20227931_SNP [dm6]	G	T	4.893e^-4	0.999	INTERGENIC
X	21358627	X_21358627_INS [dm3] X_21487600_INS [dm6]	G	GTGTGTGTG	4.894e^-4	0.999	INTERGENIC
2L	403717	2L_403717_SNP [dm3] 2L_403717_SNP [dm6]	C	T	4.901e^-4	0.999	UPSTREAM RpI135 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3R	10826984	3R_10826984_SNP [dm3] 3R_15001262_SNP [dm6]	T	A	4.913e^-4	0.999	INTERGENIC
2L	1929118	2L_1929118_SNP [dm3] 2L_1929118_SNP [dm6]	A	G	4.913e^-4	0.999	INTRON CG7337
3L	5781325	3L_5781325_SNP [dm3] 3L_5788225_SNP [dm6]	G	A	4.917e^-4	0.999	INTERGENIC
2L	579410	2L_579410_SNP [dm3] 2L_579410_SNP [dm6]	A	G	4.920e^-4	0.999	UTR_3_PRIME Pph13	TF binding site mE1_TFBS_cad
2R	15838975	2R_15838975_SNP [dm3] 2R_19951470_SNP [dm6]	A	G	4.932e^-4	0.999	NON_SYNONYMOUS_CODING CG10822
2R	17062222	2R_17062222_SNP [dm3] 2R_21174717_SNP [dm6]	A	C	4.943e^-4	0.999	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC	TF binding site mE1_TFBS_Trl
X	2002356	X_2002356_SNP [dm3] X_2108323_SNP [dm6]	C	A	4.952e^-4	0.999	INTRON csw
3L	13172721	3L_13172721_SNP [dm3] 3L_13179621_SNP [dm6]	C	T	4.955e^-4	0.999	INTERGENIC
2R	19379782	2R_19379782_SNP [dm3] 2R_23492259_SNP [dm6]	C	T	4.962e^-4	0.999	DOWNSTREAM CG43795 INTERGENIC
3R	25874097	3R_25874097_SNP [dm3] 3R_30048375_SNP [dm6]	T	A	4.965e^-4	0.999	UTR_3_PRIME CG7943 UPSTREAM CR44046 DOWNSTREAM CG15528	TF binding site mE1_TFBS_cad
3R	19030382	3R_19030382_DEL [dm3] 3R_23204660_DEL [dm6]	AAA	A	4.977e^-4	0.999	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	12110394	2R_12110394_SNP [dm3] 2R_16222889_SNP [dm6]	T	A	4.979e^-4	0.999	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2L	12354220	2L_12354220_SNP [dm3] 2L_12354220_SNP [dm6]	T	A	4.982e^-4	0.999	INTRON bru-2	TF binding site BDTNP1_TFBS_sna
2L	17872222	2L_17872222_SNP [dm3] 2L_17872222_SNP [dm6]	C	G	4.991e^-4	0.999	INTRON CadN2
X	11068959	X_11068959_SNP [dm3] X_11174926_SNP [dm6]	T	C	4.997e^-4	0.999	INTERGENIC
2R	7754671	2R_7754671_SNP [dm3] 2R_11867166_SNP [dm6]	C	T	5.005e^-4	0.999	UPSTREAM Damm DOWNSTREAM CG13185 EXON CR42532
2R	10536181	2R_10536181_SNP [dm3] 2R_14648676_SNP [dm6]	G	A	5.008e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14695527	X_14695527_SNP [dm3] X_14801494_SNP [dm6]	G	A	5.009e^-4	0.999	INTRON rut
2R	13227064	2R_13227064_SNP [dm3] 2R_17339559_SNP [dm6]	A	T	5.012e^-4	0.999	INTRON mbl
3R	15493458	3R_15493458_DEL [dm3] 3R_19667736_DEL [dm6]	TAGAA	T	5.017e^-4	0.999	INTRON CG7432
2L	10828610	2L_10828610_SNP [dm3] 2L_10828610_SNP [dm6]	G	T	5.035e^-4	0.999	INTRON Nos
X	11068985	X_11068985_SNP [dm3] X_11174952_SNP [dm6]	A	T	5.041e^-4	0.999	INTERGENIC
X	5492441	X_5492441_SNP [dm3] X_5598408_SNP [dm6]	G	A	5.042e^-4	0.999	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	17107090	2L_17107090_SNP [dm3] 2L_17107090_SNP [dm6]	T	G	5.058e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20931074	X_20931074_SNP [dm3] X_21060047_SNP [dm6]	T	A	5.059e^-4	0.999	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	22807516	3R_22807516_SNP [dm3] 3R_26981794_SNP [dm6]	C	T	5.064e^-4	0.999	INTRON CG14253
2L	410595	2L_410595_SNP [dm3] 2L_410595_SNP [dm6]	G	A	5.072e^-4	0.999	SYNONYMOUS_CODING AP-2alpha	TF binding site mE1_TFBS_cad
3R	10088761	3R_10088761_SNP [dm3] 3R_14263039_SNP [dm6]	T	C	5.072e^-4	0.999	SYNONYMOUS_CODING CG14839 UPSTREAM CG14841 DOWNSTREAM trx	TF binding site mE1_TFBS_cad
2L	10379320	2L_10379320_SNP [dm3] 2L_10379320_SNP [dm6]	G	C	5.080e^-4	0.999	UTR_3_PRIME dpr19 UPSTREAM gny
2L	16998176	2L_16998176_SNP [dm3] 2L_16998176_SNP [dm6]	C	G	5.088e^-4	0.999	UPSTREAM CR45356 & 1 other INTERGENIC
3R	26030526	3R_26030526_SNP [dm3] 3R_30204804_SNP [dm6]	G	A	5.095e^-4	0.999	INTERGENIC
X	9962661	X_9962661_SNP [dm3] X_10068628_SNP [dm6]	A	G	5.095e^-4	0.999	INTRON CG15312	TF binding site mE1_TFBS_inv
3R	25880906	3R_25880906_SNP [dm3] 3R_30055184_SNP [dm6]	A	C	5.101e^-4	0.999	SYNONYMOUS_CODING spn-A UPSTREAM CG15526 DOWNSTREAM CG7946	TF binding site mE1_TFBS_sens
2R	17925648	2R_17925648_SNP [dm3] 2R_22038143_SNP [dm6]	T	C	5.109e^-4	0.999	INTRON CG34370
3L	5907219	3L_5907219_SNP [dm3] 3L_5914119_SNP [dm6]	C	T	5.124e^-4	0.999	INTRON CG13288
3L	4374059	3L_4374059_SNP [dm3] 3L_4374059_SNP [dm6]	C	A	5.140e^-4	0.999	INTRON DopEcR
2L	17107755	2L_17107755_SNP [dm3] 2L_17107755_SNP [dm6]	A	T	5.146e^-4	0.999	INTERGENIC
2L	1037567	2L_1037567_SNP [dm3] 2L_1037567_SNP [dm6]	A	C	5.147e^-4	0.999	SYNONYMOUS_CODING CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_twi
3L	16225927	3L_16225927_SNP [dm3] 3L_16232827_SNP [dm6]	G	A	5.152e^-4	0.999	UPSTREAM PDCD-5 & 1 other DOWNSTREAM MED10 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2972778	2R_2972778_SNP [dm3] 2R_7085273_SNP [dm6]	C	A	5.152e^-4	0.999	INTERGENIC
2R	1348214	2R_1348214_SNP [dm3] 2R_5460709_SNP [dm6]	G	C	5.155e^-4	0.999	INTERGENIC
2R	13226118	2R_13226118_SNP [dm3] 2R_17338613_SNP [dm6]	A	T	5.161e^-4	0.999	INTRON mbl
3R	17527049	3R_17527049_SNP [dm3] 3R_21701327_SNP [dm6]	T	A	5.162e^-4	0.999	INTRON CG31176
3L	9563915	3L_9563915_SNP [dm3] 3L_9570815_SNP [dm6]	G	T	5.172e^-4	0.999	INTRON CG42673
2L	7943017	2L_7943017_SNP [dm3] 2L_7943017_SNP [dm6]	G	C	5.180e^-4	0.999	INTRON Snoo
2R	17926765	2R_17926765_SNP [dm3] 2R_22039260_SNP [dm6]	G	T	5.190e^-4	0.999	INTRON CG34370
3R	8194321	3R_8194321_SNP [dm3] 3R_12368599_SNP [dm6]	A	G	5.191e^-4	0.999	INTRON GstD1	TF binding site mE1_TFBS_Trl
2R	12693528	2R_12693528_SNP [dm3] 2R_16806023_SNP [dm6]	C	A	5.204e^-4	0.999	INTERGENIC
X	11661144	X_11661144_DEL [dm3] X_11767111_DEL [dm6]	TTCGT	GGAC	5.210e^-4	0.999	INTRON m	TF binding site mE1_TFBS_chinmo
2R	1316513	2R_1316513_SNP [dm3] 2R_5429008_SNP [dm6]	G	A	5.215e^-4	0.999	INTRON laccase2	transposable element FlyBase
3L	17629152	3L_17629152_SNP [dm3] 3L_17636052_SNP [dm6]	G	A	5.217e^-4	0.999	INTRON CG7497
2R	7166512	2R_7166512_DEL [dm3] 2R_11279007_DEL [dm6]	AGAGCAACTTA...	T	5.217e^-4	0.999	UPSTREAM Cpr47Eg & 1 other INTRON CG9067	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	5726021	X_5726021_SNP [dm3] X_5831988_SNP [dm6]	A	C	5.226e^-4	0.999	UPSTREAM tRNA:CR32761:Psi INTRON CG15765 EXON CR43264
X	13964373	X_13964373_SNP [dm3] X_14070340_SNP [dm6]	T	G	5.227e^-4	0.999	UPSTREAM tRNA:S474:12Eh INTERGENIC
2L	20618745	2L_20618745_SNP [dm3] 2L_20618745_SNP [dm6]	A	T	5.228e^-4	0.999	UPSTREAM mir-288 INTRON CR44909
2L	1032925	2L_1032925_INS [dm3] 2L_1032925_INS [dm6]	A	ATCAATGCCTGTGAGTTTAA...	5.233e^-4	0.999	INTRON IA-2
2R	1045342	2R_1045342_SNP [dm3] 2R_5157837_SNP [dm6]	A	T	5.245e^-4	0.999	INTERGENIC	transposable element FlyBase
2R	9969263	2R_9969263_SNP [dm3] 2R_14081758_SNP [dm6]	C	A	5.247e^-4	0.999	INTRON Prosap
2R	17206475	2R_17206475_SNP [dm3] 2R_21318970_SNP [dm6]	G	A	5.262e^-4	0.999	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655	TF binding site mE1_TFBS_sens
X	8599053	X_8599053_INS [dm3] X_8705020_INS [dm6]	G	GAA	5.263e^-4	0.999	INTERGENIC
2L	17194970	2L_17194970_SNP [dm3] 2L_17194970_SNP [dm6]	G	T	5.265e^-4	0.999	INTRON beat-IIIc
3R	19776155	3R_19776155_SNP [dm3] 3R_23950433_SNP [dm6]	T	A	5.266e^-4	0.999	INTERGENIC
2L	4599189	2L_4599189_SNP [dm3] 2L_4599189_SNP [dm6]	A	T	5.273e^-4	0.999	INTRON dp	TF binding site mE1_TFBS_sbb
2R	15838786	2R_15838786_SNP [dm3] 2R_19951281_SNP [dm6]	C	T	5.290e^-4	0.999	UPSTREAM CG10822 INTERGENIC
2R	2472955	2R_2472955_SNP [dm3] 2R_6585450_SNP [dm6]	G	A	5.298e^-4	0.999	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11543488	3R_11543488_SNP [dm3] 3R_15717766_SNP [dm6]	C	T	5.300e^-4	0.999	INTERGENIC
2L	17107041	2L_17107041_SNP [dm3] 2L_17107041_SNP [dm6]	T	A	5.302e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15934530	2R_15934530_SNP [dm3] 2R_20047025_SNP [dm6]	A	G	5.302e^-4	0.999	INTERGENIC
3L	17502997	3L_17502997_SNP [dm3] 3L_17509897_SNP [dm6]	T	A	5.302e^-4	0.999	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21357562	X_21357562_SNP [dm3] X_21486535_SNP [dm6]	G	C	5.315e^-4	0.999	INTERGENIC
3L	12092526	3L_12092526_SNP [dm3] 3L_12099426_SNP [dm6]	T	A	5.319e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4811827	3L_4811827_SNP [dm3] 3L_4811827_SNP [dm6]	A	G	5.320e^-4	0.999	INTRON Dhc64C
3R	11974670	3R_11974670_SNP [dm3] 3R_16148948_SNP [dm6]	G	T	5.327e^-4	0.999	UTR_3_PRIME CG5916 DOWNSTREAM Fer2	TF binding site mE1_TFBS_cad
3L	14068535	3L_14068535_SNP [dm3] 3L_14075435_SNP [dm6]	G	T	5.328e^-4	0.999	NON_SYNONYMOUS_CODING Pex1 UPSTREAM btl	TF binding site BDTNP1_TFBS_dl
2L	2158890	2L_2158890_SNP [dm3] 2L_2158890_SNP [dm6]	A	G	5.329e^-4	0.999	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4219122	3L_4219122_SNP [dm3] 3L_4219122_SNP [dm6]	T	C	5.329e^-4	0.999	SYNONYMOUS_CODING CG43367
3L	13172608	3L_13172608_SNP [dm3] 3L_13179508_SNP [dm6]	T	A	5.334e^-4	0.999	INTERGENIC
2R	7130675	2R_7130675_SNP [dm3] 2R_11243170_SNP [dm6]	G	T	5.340e^-4	0.999	UPSTREAM Listericin INTERGENIC
2R	9225248	2R_9225248_SNP [dm3] 2R_13337743_SNP [dm6]	G	C	5.342e^-4	0.999	INTRON CR44206	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	22435607	3L_22435607_SNP [dm3] 3L_22442507_SNP [dm6]	G	T	5.347e^-4	0.999	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1363947	3L_1363947_SNP [dm3] 3L_1363947_SNP [dm6]	T	C	5.351e^-4	0.999	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
2L	19363373	2L_19363373_DEL [dm3] 2L_19363373_DEL [dm6]	GG	G	5.355e^-4	0.999	UPSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1017338	2R_1017338_SNP [dm3] 2R_5129833_SNP [dm6]	C	A	5.361e^-4	0.999	DOWNSTREAM CR43256 INTERGENIC	transposable element FlyBase
2R	10887638	2R_10887638_SNP [dm3] 2R_15000133_SNP [dm6]	T	C	5.363e^-4	0.999	INTERGENIC
2L	4825401	2L_4825401_SNP [dm3] 2L_4825401_SNP [dm6]	G	A	5.365e^-4	0.999	INTRON CG15628
3L	1363215	3L_1363215_DEL [dm3] 3L_1363215_DEL [dm6]	AA	A	5.367e^-4	0.999	INTRON Ptp61F
2L	17021364	2L_17021364_SNP [dm3] 2L_17021364_SNP [dm6]	G	T	5.370e^-4	0.999	INTERGENIC
X	8538747	X_8538747_SNP [dm3] X_8644714_SNP [dm6]	A	T	5.372e^-4	0.999	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14851541	3L_14851541_SNP [dm3] 3L_14858441_SNP [dm6]	A	T	5.384e^-4	0.999	INTRON CG17839
3R	7489118	3R_7489118_SNP [dm3] 3R_11663396_SNP [dm6]	C	T	5.397e^-4	0.999	INTRON CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1536972	3L_1536972_SNP [dm3] 3L_1536972_SNP [dm6]	G	T	5.397e^-4	0.999	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9227270	2L_9227270_DEL [dm3] 2L_9227270_DEL [dm6]	TC	T	5.399e^-4	0.999	INTRON tai	TF binding site BDTNP1_TFBS_twi
2L	1032865	2L_1032865_DEL [dm3] 2L_1032865_DEL [dm6]	GTTCTAA	G	5.410e^-4	0.999	INTRON IA-2
2L	1032876	2L_1032876_DEL [dm3] 2L_1032876_DEL [dm6]	TCAGTAA	T	5.410e^-4	0.999	INTRON IA-2
3L	11174803	3L_11174803_SNP [dm3] 3L_11181703_SNP [dm6]	G	C	5.414e^-4	0.999	INTRON GlcAT-P
3L	13099193	3L_13099193_SNP [dm3] 3L_13106093_SNP [dm6]	T	A	5.418e^-4	0.999	INTERGENIC
2L	17198256	2L_17198256_DEL [dm3] 2L_17198256_DEL [dm6]	TATATA	T	5.423e^-4	0.999	INTRON beat-IIIc	TF binding site mE1_TFBS_zfh1
2L	5862267	2L_5862267_SNP [dm3] 2L_5862267_SNP [dm6]	C	T	5.430e^-4	0.999	INTRON rau
3L	15511683	3L_15511683_SNP [dm3] 3L_15518583_SNP [dm6]	G	C	5.439e^-4	0.999	START_GAINED mex1 UTR_5_PRIME mex1 UPSTREAM mex1 INTRON mex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19493020	2R_19493020_DEL [dm3] 2R_23605497_DEL [dm6]	AAG	A	5.442e^-4	0.999	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
2L	21804013	2L_21804013_SNP [dm3] 2L_21804013_SNP [dm6]	A	G	5.444e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13036443	X_13036443_SNP [dm3] X_13142410_SNP [dm6]	C	T	5.444e^-4	0.999	INTRON CG32645
X	4070736	X_4070736_SNP [dm3] X_4176703_SNP [dm6]	G	C	5.447e^-4	0.999	INTRON Fas2
3R	19076182	3R_19076182_SNP [dm3] 3R_23250460_SNP [dm6]	C	T	5.449e^-4	0.999	SYNONYMOUS_CODING CG4449
2R	19965553	2R_19965553_SNP [dm3] 2R_24078030_SNP [dm6]	C	G	5.458e^-4	0.999	UTR_3_PRIME Mlp60A DOWNSTREAM CG10339
3L	3493805	3L_3493805_SNP [dm3] 3L_3493805_SNP [dm6]	C	G	5.460e^-4	0.999	INTRON CG42324	TF binding site mE1_TFBS_inv
2R	6821595	2R_6821595_SNP [dm3] 2R_10934090_SNP [dm6]	C	T	5.466e^-4	0.999	INTERGENIC
X	12400494	X_12400494_SNP [dm3] X_12506461_SNP [dm6]	A	G	5.470e^-4	0.999	INTRON CG2556
2L	3056261	2L_3056261_SNP [dm3] 2L_3056261_SNP [dm6]	C	A	5.473e^-4	0.999	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17618757	2R_17618757_SNP [dm3] 2R_21731252_SNP [dm6]	C	T	5.473e^-4	0.999	INTERGENIC
2L	8880978	2L_8880978_SNP [dm3] 2L_8880978_SNP [dm6]	G	T	5.474e^-4	0.999	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	404160	2L_404160_DEL [dm3] 2L_404160_DEL [dm6]	TT	T	5.482e^-4	0.999	UPSTREAM RpI135 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3L	1343423	3L_1343423_SNP [dm3] 3L_1343423_SNP [dm6]	A	T	5.483e^-4	0.999	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
X	13964375	X_13964375_SNP [dm3] X_14070342_SNP [dm6]	C	T	5.505e^-4	0.999	UPSTREAM tRNA:S474:12Eh INTERGENIC
2R	11932757	2R_11932757_SNP [dm3] 2R_16045252_SNP [dm6]	A	G	5.515e^-4	0.999	INTRON SP2353
3R	10632467	3R_10632467_SNP [dm3] 3R_14806745_SNP [dm6]	A	T	5.516e^-4	0.999	UTR_3_PRIME btsz	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	8499720	2R_8499720_INS [dm3] 2R_12612215_INS [dm6]	A	AGTTTTTCTAAC...	5.526e^-4	0.999	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	4440469	3L_4440469_SNP [dm3] 3L_4440469_SNP [dm6]	G	A	5.537e^-4	0.999	INTERGENIC
2L	2418353	2L_2418353_SNP [dm3] 2L_2418353_SNP [dm6]	A	T	5.551e^-4	0.999	UPSTREAM CG34448 DOWNSTREAM CG34447 INTERGENIC
2R	17191187	2R_17191187_SNP [dm3] 2R_21303682_SNP [dm6]	A	T	5.570e^-4	0.999	INTRON CG42672
3L	17555524	3L_17555524_SNP [dm3] 3L_17562424_SNP [dm6]	T	C	5.578e^-4	0.999	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17929615	2R_17929615_SNP [dm3] 2R_22042110_SNP [dm6]	C	T	5.583e^-4	0.999	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19037350	3R_19037350_SNP [dm3] 3R_23211628_SNP [dm6]	C	T	5.586e^-4	0.999	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3R	13645392	3R_13645392_SNP [dm3] 3R_17819670_SNP [dm6]	T	A	5.586e^-4	0.999	INTRON tinc
3R	21417662	3R_21417662_SNP [dm3] 3R_25591940_SNP [dm6]	C	A	5.588e^-4	0.999	UTR_3_PRIME ymp INTRON msi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	11668213	X_11668213_SNP [dm3] X_11774180_SNP [dm6]	G	A	5.594e^-4	0.999	INTRON dy	TF binding site mE1_TFBS_chinmo
3L	17606160	3L_17606160_SNP [dm3] 3L_17613060_SNP [dm6]	G	C	5.598e^-4	0.999	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3145854	2L_3145854_SNP [dm3] 2L_3145854_SNP [dm6]	C	G	5.598e^-4	0.999	UPSTREAM CG12400 DOWNSTREAM Mad INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3145870	2L_3145870_SNP [dm3] 2L_3145870_SNP [dm6]	C	T	5.598e^-4	0.999	UPSTREAM CG12400 DOWNSTREAM Mad INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16915298	2R_16915298_SNP [dm3] 2R_21027793_SNP [dm6]	A	T	5.601e^-4	0.999	INTERGENIC
2R	12807830	2R_12807830_SNP [dm3] 2R_16920325_SNP [dm6]	A	T	5.602e^-4	0.999	INTERGENIC
2R	19558948	2R_19558948_SNP [dm3] 2R_23671425_SNP [dm6]	T	G	5.608e^-4	0.999	INTRON Pde8	TF binding site mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Tolerance_PRettgeri phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results