DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.226e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08468
In_2R_NS	0.07825

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.516	0.0634
In_2R_NS	5.6273	0.06

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2547 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	12680355	2R_12680355_SNP [dm3] 2R_16792850_SNP [dm6]	T	A	6.365e^-7	0.717	DOWNSTREAM CG15615 & 1 other INTRON CG15919
2R	12680354	2R_12680354_SNP [dm3] 2R_16792849_SNP [dm6]	C	T	1.007e^-6	0.717	DOWNSTREAM CG15615 & 1 other INTRON CG15919
3L	1909764	3L_1909764_SNP [dm3] 3L_1909764_SNP [dm6]	T	C	1.236e^-6	0.717	INTRON CG1887
2R	17685083	2R_17685083_DEL [dm3] 2R_21797578_DEL [dm6]	GTC	G	2.580e^-6	0.717	DOWNSTREAM CG34204 & 1 other INTERGENIC
2L	19129166	2L_19129166_INS [dm3] 2L_19129166_INS [dm6]	T	TGATTT	2.811e^-6	0.717	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
2L	15175615	2L_15175615_SNP [dm3] 2L_15175615_SNP [dm6]	A	C	2.818e^-6	0.717	INTRON CG4168
X	16700589	X_16700589_SNP [dm3] X_16806556_SNP [dm6]	A	G	4.025e^-6	0.717	DOWNSTREAM CG13005 INTRON ppk28 & 1 other
2R	16304273	2R_16304273_SNP [dm3] 2R_20416768_SNP [dm6]	C	A	4.155e^-6	0.717	INTERGENIC
2R	786462	2R_786462_SNP [dm3] 2R_4898957_SNP [dm6]	A	C	4.758e^-6	0.717	INTRON CG44102	transposable element FlyBase
2R	15248610	2R_15248610_SNP [dm3] 2R_19361105_SNP [dm6]	A	C	4.906e^-6	0.717	SYNONYMOUS_CODING CG11961
2R	15248616	2R_15248616_SNP [dm3] 2R_19361111_SNP [dm6]	T	C	4.906e^-6	0.717	SYNONYMOUS_CODING CG11961
2R	16176361	2R_16176361_SNP [dm3] 2R_20288856_SNP [dm6]	T	C	5.207e^-6	0.717	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo
X	9733635	X_9733635_SNP [dm3] X_9839602_SNP [dm6]	T	G	5.405e^-6	0.717	INTRON CG32698
3L	1673072	3L_1673072_SNP [dm3] 3L_1673072_SNP [dm6]	G	C	5.525e^-6	0.717	UPSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_cad
2L	19101233	2L_19101233_INS [dm3] 2L_19101233_INS [dm6]	A	AA	7.617e^-6	0.717	UPSTREAM CG17344 & 1 other INTRON Lim3
3R	11018344	3R_11018344_SNP [dm3] 3R_15192622_SNP [dm6]	T	G	8.185e^-6	0.717	SYNONYMOUS_CODING CG6752 UPSTREAM mir-3644
2L	10686264	2L_10686264_SNP [dm3] 2L_10686264_SNP [dm6]	T	C	8.422e^-6	0.717	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
2R	9505716	2R_9505716_SNP [dm3] 2R_13618211_SNP [dm6]	C	T	8.589e^-6	0.717	INTERGENIC
3L	9919556	3L_9919556_SNP [dm3] 3L_9926456_SNP [dm6]	T	C	8.977e^-6	0.717	INTRON CG34356
3R	19070239	3R_19070239_SNP [dm3] 3R_23244517_SNP [dm6]	A	G	9.627e^-6	0.717	INTRON CG4467
3R	20405065	3R_20405065_SNP [dm3] 3R_24579343_SNP [dm6]	G	A	1.019e^-5	0.717	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9405390	2L_9405390_SNP [dm3] 2L_9405390_SNP [dm6]	G	A	1.039e^-5	0.717	INTRON Shawl
X	20784905	X_20784905_SNP [dm3] X_20913878_SNP [dm6]	T	C	1.050e^-5	0.717	INTRON shakB
3L	17443844	3L_17443844_SNP [dm3] 3L_17450744_SNP [dm6]	C	G	1.071e^-5	0.717	NON_SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	988963	2L_988963_SNP [dm3] 2L_988963_SNP [dm6]	G	T	1.099e^-5	0.717	EXON CR44801	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3246304	2L_3246304_SNP [dm3] 2L_3246304_SNP [dm6]	G	A	1.248e^-5	0.717	INTERGENIC
2L	3246291	2L_3246291_SNP [dm3] 2L_3246291_SNP [dm6]	T	A	1.299e^-5	0.717	INTERGENIC
2L	3246301	2L_3246301_SNP [dm3] 2L_3246301_SNP [dm6]	G	T	1.321e^-5	0.717	INTERGENIC
2R	16177451	2R_16177451_SNP [dm3] 2R_20289946_SNP [dm6]	A	C	1.337e^-5	0.717	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
2L	11302153	2L_11302153_SNP [dm3] 2L_11302153_SNP [dm6]	T	A	1.339e^-5	0.717	INTERGENIC
2R	12670723	2R_12670723_SNP [dm3] 2R_16783218_SNP [dm6]	T	C	1.407e^-5	0.717	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	1.513e^-5	0.717	INTRON CG13917
X	8578764	X_8578764_INS [dm3] X_8684731_INS [dm6]	T	TC	1.520e^-5	0.717	UPSTREAM CG11284 INTRON CG11284
3R	19070234	3R_19070234_SNP [dm3] 3R_23244512_SNP [dm6]	A	G	1.582e^-5	0.717	INTRON CG4467
2L	11302671	2L_11302671_SNP [dm3] 2L_11302671_SNP [dm6]	G	A	1.672e^-5	0.717	INTERGENIC
2R	9505718	2R_9505718_SNP [dm3] 2R_13618213_SNP [dm6]	G	T	1.692e^-5	0.717	INTERGENIC
X	13200743	X_13200743_SNP [dm3] X_13306710_SNP [dm6]	T	G	1.781e^-5	0.717	SYNONYMOUS_CODING IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16177429	2R_16177429_SNP [dm3] 2R_20289924_SNP [dm6]	T	C	1.806e^-5	0.717	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	1.825e^-5	0.717	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	15935943	3L_15935943_SNP [dm3] 3L_15942843_SNP [dm6]	G	A	1.975e^-5	0.717	INTRON Pka-C3
3R	24418101	3R_24418101_SNP [dm3] 3R_28592379_SNP [dm6]	G	A	1.983e^-5	0.717	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2L	8321657	2L_8321657_SNP [dm3] 2L_8321657_SNP [dm6]	A	T	2.015e^-5	0.717	UTR_3_PRIME CG7781 DOWNSTREAM CG7787
3L	8999109	3L_8999109_SNP [dm3] 3L_9006009_SNP [dm6]	A	G	2.058e^-5	0.717	SYNONYMOUS_CODING Doc3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6810284	X_6810284_INS [dm3] X_6916251_INS [dm6]	T	TAT	2.092e^-5	0.717	INTRON CG14431
X	6810287	X_6810287_SNP [dm3] X_6916254_SNP [dm6]	A	G	2.092e^-5	0.717	INTRON CG14431
3L	15886227	3L_15886227_SNP [dm3] 3L_15893127_SNP [dm6]	G	A	2.113e^-5	0.717	INTRON pHCl
2L	12725164	2L_12725164_SNP [dm3] 2L_12725164_SNP [dm6]	T	A	2.130e^-5	0.717	INTRON MRP
2L	12725341	2L_12725341_SNP [dm3] 2L_12725341_SNP [dm6]	T	C	2.130e^-5	0.717	INTRON MRP
2L	12726295	2L_12726295_SNP [dm3] 2L_12726295_SNP [dm6]	G	C	2.130e^-5	0.717	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8449097	2L_8449097_SNP [dm3] 2L_8449097_SNP [dm6]	C	T	2.226e^-5	0.717	SPLICE_SITE_REGION U26 SYNONYMOUS_CODING U26 DOWNSTREAM fu12
2L	11305847	2L_11305847_SNP [dm3] 2L_11305847_SNP [dm6]	C	A	2.268e^-5	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
X	9118394	X_9118394_SNP [dm3] X_9224361_SNP [dm6]	A	G	2.300e^-5	0.717	INTERGENIC
3L	8891584	3L_8891584_SNP [dm3] 3L_8898484_SNP [dm6]	C	T	2.477e^-5	0.717	INTRON TrpA1
2L	13792113	2L_13792113_SNP [dm3] 2L_13792113_SNP [dm6]	T	A	2.634e^-5	0.717	NON_SYNONYMOUS_CODING CG16863	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19100085	2L_19100085_SNP [dm3] 2L_19100085_SNP [dm6]	G	A	2.649e^-5	0.717	INTRON Lim3
X	9803183	X_9803183_SNP [dm3] X_9909150_SNP [dm6]	A	G	2.659e^-5	0.717	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
2R	12681104	2R_12681104_SNP [dm3] 2R_16793599_SNP [dm6]	C	A	2.689e^-5	0.717	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
3L	2351752	3L_2351752_SNP [dm3] 3L_2351752_SNP [dm6]	A	G	2.818e^-5	0.717	INTERGENIC
3L	8891777	3L_8891777_SNP [dm3] 3L_8898677_SNP [dm6]	C	T	2.981e^-5	0.717	INTRON TrpA1
2L	12725735	2L_12725735_SNP [dm3] 2L_12725735_SNP [dm6]	C	T	3.046e^-5	0.717	SYNONYMOUS_CODING MRP
3R	13026585	3R_13026585_SNP [dm3] 3R_17200863_SNP [dm6]	T	A	3.101e^-5	0.717	INTRON Mur89F
3L	8891550	3L_8891550_SNP [dm3] 3L_8898450_SNP [dm6]	A	T	3.102e^-5	0.717	INTRON TrpA1
3L	8892095	3L_8892095_SNP [dm3] 3L_8898995_SNP [dm6]	C	G	3.102e^-5	0.717	INTRON TrpA1
3L	8892127	3L_8892127_SNP [dm3] 3L_8899027_SNP [dm6]	C	T	3.102e^-5	0.717	INTRON TrpA1
3L	15469589	3L_15469589_SNP [dm3] 3L_15476489_SNP [dm6]	C	G	3.176e^-5	0.717	INTERGENIC
2L	7715589	2L_7715589_SNP [dm3] 2L_7715589_SNP [dm6]	A	T	3.200e^-5	0.717	NON_SYNONYMOUS_CODING CG33296
2R	16177498	2R_16177498_SNP [dm3] 2R_20289993_SNP [dm6]	C	G	3.250e^-5	0.717	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
2L	12151606	2L_12151606_SNP [dm3] 2L_12151606_SNP [dm6]	G	A	3.263e^-5	0.717	INTRON CG31760
2L	4790558	2L_4790558_SNP [dm3] 2L_4790558_SNP [dm6]	A	T	3.304e^-5	0.717	INTRON CG15630
2R	6975347	2R_6975347_INS [dm3] 2R_11087842_INS [dm6]	T	TCGTCTAGGTT...	3.365e^-5	0.717	UPSTREAM CG43189 INTRON luna & 1 other	TF binding site mE1_TFBS_Kr
3L	5474372	3L_5474372_SNP [dm3] 3L_5481272_SNP [dm6]	G	C	3.384e^-5	0.717	SYNONYMOUS_CODING CG4835
3L	5374564	3L_5374564_SNP [dm3] 3L_5381464_SNP [dm6]	C	G	3.416e^-5	0.717	INTRON Ir64a
X	7903827	X_7903827_INS [dm3] X_8009794_INS [dm6]	A	AAAACCA	3.540e^-5	0.717	INTRON Tbh
3L	16532066	3L_16532066_DEL [dm3] 3L_16538966_DEL [dm6]	CA	C	3.615e^-5	0.717	INTRON CG43373
3L	1847857	3L_1847857_SNP [dm3] 3L_1847857_SNP [dm6]	G	A	3.653e^-5	0.717	INTERGENIC
X	12088603	X_12088603_SNP [dm3] X_12194570_SNP [dm6]	G	A	3.667e^-5	0.717	INTRON Ten-a
3L	12565167	3L_12565167_SNP [dm3] 3L_12572067_SNP [dm6]	C	A	3.681e^-5	0.717	SYNONYMOUS_CODING sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12883585	3L_12883585_SNP [dm3] 3L_12890485_SNP [dm6]	T	A	3.692e^-5	0.717	UPSTREAM CR45748 INTRON CG43894
2R	13669741	2R_13669741_SNP [dm3] 2R_17782236_SNP [dm6]	T	A	3.741e^-5	0.717	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11539460	3L_11539460_SNP [dm3] 3L_11546360_SNP [dm6]	C	T	3.819e^-5	0.717	INTRON Mob2
3R	17358439	3R_17358439_SNP [dm3] 3R_21532717_SNP [dm6]	T	C	3.887e^-5	0.717	EXON CR43372
X	19954196	X_19954196_SNP [dm3] X_20060163_SNP [dm6]	A	G	3.892e^-5	0.717	INTRON Dop2R
2L	10723776	2L_10723776_SNP [dm3] 2L_10723776_SNP [dm6]	A	T	3.975e^-5	0.717	UPSTREAM CG6431 INTERGENIC
X	9803438	X_9803438_SNP [dm3] X_9909405_SNP [dm6]	G	A	4.001e^-5	0.717	UTR_3_PRIME CG1986
2L	11301493	2L_11301493_SNP [dm3] 2L_11301493_SNP [dm6]	T	A	4.213e^-5	0.717	INTERGENIC
2R	6942081	2R_6942081_SNP [dm3] 2R_11054576_SNP [dm6]	A	C	4.243e^-5	0.717	INTRON luna
3L	10032780	3L_10032780_SNP [dm3] 3L_10039680_SNP [dm6]	C	A	4.250e^-5	0.717	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3R	24257966	3R_24257966_SNP [dm3] 3R_28432244_SNP [dm6]	G	A	4.253e^-5	0.717	INTRON beat-VI
3L	19285729	3L_19285729_SNP [dm3] 3L_19292629_SNP [dm6]	G	A	4.283e^-5	0.717	UTR_5_PRIME Gbs-76A UPSTREAM Gbs-76A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	17669278	2R_17669278_SNP [dm3] 2R_21781773_SNP [dm6]	T	C	4.314e^-5	0.717	INTERGENIC
2L	11306890	2L_11306890_SNP [dm3] 2L_11306890_SNP [dm6]	A	G	4.514e^-5	0.717	UPSTREAM CR43721 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12127147	3L_12127147_SNP [dm3] 3L_12134047_SNP [dm6]	C	T	4.529e^-5	0.717	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
3L	1715681	3L_1715681_MNP [dm3] 3L_1715681_MNP [dm6]	GTTA	TAAC	4.547e^-5	0.717	UTR_3_PRIME drpr DOWNSTREAM drpr & 1 other
3L	1715686	3L_1715686_INS [dm3] 3L_1715686_INS [dm6]	A	AT	4.547e^-5	0.717	UTR_3_PRIME drpr DOWNSTREAM drpr & 1 other
2L	16395828	2L_16395828_SNP [dm3] 2L_16395828_SNP [dm6]	G	A	4.556e^-5	0.717	INTERGENIC
3L	12883596	3L_12883596_SNP [dm3] 3L_12890496_SNP [dm6]	C	T	4.582e^-5	0.717	UPSTREAM CR45748 INTRON CG43894
3L	12883597	3L_12883597_SNP [dm3] 3L_12890497_SNP [dm6]	G	A	4.582e^-5	0.717	UPSTREAM CR45748 INTRON CG43894
2R	6942078	2R_6942078_SNP [dm3] 2R_11054573_SNP [dm6]	G	C	4.615e^-5	0.717	INTRON luna
3L	12391055	3L_12391055_SNP [dm3] 3L_12397955_SNP [dm6]	A	T	4.620e^-5	0.717	DOWNSTREAM Obp69a INTRON CG32104	TF binding site mE1_TFBS_HSA
2R	9505695	2R_9505695_SNP [dm3] 2R_13618190_SNP [dm6]	A	T	4.670e^-5	0.717	INTERGENIC
X	8955803	X_8955803_SNP [dm3] X_9061770_SNP [dm6]	A	T	4.739e^-5	0.717	UPSTREAM CG15365 INTRON CG15365
3L	1699420	3L_1699420_SNP [dm3] 3L_1699420_SNP [dm6]	C	T	4.767e^-5	0.717	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	10681768	X_10681768_SNP [dm3] X_10787735_SNP [dm6]	A	T	4.874e^-5	0.717	UPSTREAM sesB & 1 other DOWNSTREAM Imp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8331177	2L_8331177_SNP [dm3] 2L_8331177_SNP [dm6]	G	A	4.917e^-5	0.717	INTRON CG14275
2R	10774811	2R_10774811_SNP [dm3] 2R_14887306_SNP [dm6]	G	T	5.075e^-5	0.717	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
X	20454970	X_20454970_DEL [dm3] X_20583943_DEL [dm6]	TATGCTATGCC...	T	5.122e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17397098	2R_17397098_SNP [dm3] 2R_21509593_SNP [dm6]	G	T	5.128e^-5	0.717	INTRON MESK2
X	9803405	X_9803405_SNP [dm3] X_9909372_SNP [dm6]	C	T	5.182e^-5	0.717	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3R	20405199	3R_20405199_SNP [dm3] 3R_24579477_SNP [dm6]	C	A	5.260e^-5	0.717	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7688337	2L_7688337_SNP [dm3] 2L_7688337_SNP [dm6]	C	G	5.311e^-5	0.717	NON_SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
2L	11309170	2L_11309170_SNP [dm3] 2L_11309170_SNP [dm6]	C	T	5.446e^-5	0.717	INTERGENIC
2L	3246280	2L_3246280_SNP [dm3] 2L_3246280_SNP [dm6]	A	G	5.446e^-5	0.717	INTERGENIC
3L	3006724	3L_3006724_SNP [dm3] 3L_3006724_SNP [dm6]	T	C	5.478e^-5	0.717	INTRON FMRFaR
X	18817557	X_18817557_SNP [dm3] X_18923524_SNP [dm6]	C	A	5.534e^-5	0.717	INTERGENIC
3R	21386899	3R_21386899_SNP [dm3] 3R_25561177_SNP [dm6]	G	A	5.538e^-5	0.717	INTRON msi
2L	7958966	2L_7958966_SNP [dm3] 2L_7958966_SNP [dm6]	G	T	5.549e^-5	0.717	INTRON Snoo
2L	10344117	2L_10344117_SNP [dm3] 2L_10344117_SNP [dm6]	C	A	5.552e^-5	0.717	UTR_3_PRIME Sps2 UPSTREAM CG5022	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18652020	2L_18652020_SNP [dm3] 2L_18652020_SNP [dm6]	G	T	5.701e^-5	0.717	INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10855844	X_10855844_SNP [dm3] X_10961811_SNP [dm6]	G	A	5.730e^-5	0.717	INTRON Myo10A
3L	4838825	3L_4838825_SNP [dm3] 3L_4838825_SNP [dm6]	A	G	5.734e^-5	0.717	UTR_5_PRIME CG13707 INTRON CG13707
3L	4838899	3L_4838899_SNP [dm3] 3L_4838899_SNP [dm6]	G	A	5.734e^-5	0.717	INTRON CG13707
3L	17697020	3L_17697020_SNP [dm3] 3L_17703920_SNP [dm6]	A	C	5.744e^-5	0.717	INTRON Ccn
2R	18946455	2R_18946455_SNP [dm3] 2R_23058932_SNP [dm6]	G	C	5.833e^-5	0.717	DOWNSTREAM CG44253 INTRON CG44252
2R	6294431	2R_6294431_SNP [dm3] 2R_10406926_SNP [dm6]	A	T	5.843e^-5	0.717	DOWNSTREAM CG12898 INTRON CG42732
2R	14754449	2R_14754449_SNP [dm3] 2R_18866944_SNP [dm6]	G	T	5.891e^-5	0.717	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
X	11228852	X_11228852_SNP [dm3] X_11334819_SNP [dm6]	A	G	5.903e^-5	0.717	SYNONYMOUS_CODING Kap3 DOWNSTREAM CG1657	TF binding site mE1_TFBS_cad
2R	1018767	2R_1018767_SNP [dm3] 2R_5131262_SNP [dm6]	C	T	5.906e^-5	0.717	INTERGENIC	transposable element FlyBase
X	20289537	X_20289537_SNP [dm3] X_20418510_SNP [dm6]	T	C	5.956e^-5	0.717	NON_SYNONYMOUS_CODING Obp19c DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9125689	X_9125689_SNP [dm3] X_9231656_SNP [dm6]	G	T	6.002e^-5	0.717	SYNONYMOUS_CODING CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	22813578	3R_22813578_SNP [dm3] 3R_26987856_SNP [dm6]	A	C	6.085e^-5	0.717	UPSTREAM CG31075 INTRON CG31075
X	8501008	X_8501008_DEL [dm3] X_8606975_DEL [dm6]	TCTTCCCAAGTTT...	T	6.105e^-5	0.717	UPSTREAM Caf1-180 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	785933	2R_785933_SNP [dm3] 2R_4898428_SNP [dm6]	G	A	6.225e^-5	0.717	INTRON CG44102	TF binding site mE1_TFBS_HSA mE1_TFBS_sens transposable element FlyBase
2R	8435621	2R_8435621_SNP [dm3] 2R_12548116_SNP [dm6]	A	C	6.227e^-5	0.717	INTRON fra	TF binding site mE1_TFBS_cad
X	10988509	X_10988509_SNP [dm3] X_11094476_SNP [dm6]	A	G	6.292e^-5	0.717	UTR_3_PRIME CG2061 EXON CR45604
3L	8897855	3L_8897855_SNP [dm3] 3L_8904755_SNP [dm6]	A	G	6.311e^-5	0.717	UTR_5_PRIME TrpA1
3L	13434402	3L_13434402_SNP [dm3] 3L_13441302_SNP [dm6]	T	C	6.325e^-5	0.717	UPSTREAM CG10140 INTRON CG14109
2R	17648986	2R_17648986_INS [dm3] 2R_21761481_INS [dm6]	T	TTAACT	6.344e^-5	0.717	INTERGENIC
2L	7620553	2L_7620553_DEL [dm3] 2L_7620553_DEL [dm6]	TA	T	6.402e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21386238	3R_21386238_SNP [dm3] 3R_25560516_SNP [dm6]	A	T	6.499e^-5	0.717	INTRON msi
2R	3623965	2R_3623965_SNP [dm3] 2R_7736460_SNP [dm6]	A	G	6.596e^-5	0.717	UPSTREAM CG18812 DOWNSTREAM CG30497 & 1 other INTERGENIC
3L	16532158	3L_16532158_SNP [dm3] 3L_16539058_SNP [dm6]	C	G	6.606e^-5	0.717	INTRON CG43373
2L	7688341	2L_7688341_SNP [dm3] 2L_7688341_SNP [dm6]	G	A	6.649e^-5	0.717	SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
2L	19129403	2L_19129403_SNP [dm3] 2L_19129403_SNP [dm6]	G	A	6.677e^-5	0.717	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	4278602	2L_4278602_SNP [dm3] 2L_4278602_SNP [dm6]	T	C	6.695e^-5	0.717	NON_SYNONYMOUS_CODING Art2
3L	13183616	3L_13183616_SNP [dm3] 3L_13190516_SNP [dm6]	T	C	6.818e^-5	0.717	INTERGENIC
2L	10686250	2L_10686250_MNP [dm3] 2L_10686250_MNP [dm6]	ACT	TAC	6.881e^-5	0.717	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
2R	668322	2R_668322_SNP [dm3] 2R_4780817_SNP [dm6]	G	A	6.964e^-5	0.717	EXON CR43281
2L	11375384	2L_11375384_SNP [dm3] 2L_11375384_SNP [dm6]	A	C	7.149e^-5	0.717	INTERGENIC	regulatory region REDfly_CRMs
2L	18639147	2L_18639147_SNP [dm3] 2L_18639147_SNP [dm6]	G	T	7.321e^-5	0.717	INTRON MESR3
2R	1076702	2R_1076702_SNP [dm3] 2R_5189197_SNP [dm6]	T	A	7.329e^-5	0.717	INTRON Nipped-A	transposable element FlyBase
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	7.344e^-5	0.717	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	17097293	X_17097293_SNP [dm3] X_17203260_SNP [dm6]	A	G	7.438e^-5	0.717	SYNONYMOUS_CODING CG5070 UPSTREAM CG8918
3L	8891130	3L_8891130_SNP [dm3] 3L_8898030_SNP [dm6]	A	G	7.448e^-5	0.717	SPLICE_SITE_REGION TrpA1 INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15213498	2R_15213498_SNP [dm3] 2R_19325993_SNP [dm6]	C	G	7.506e^-5	0.717	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
X	20028096	X_20028096_DEL [dm3] X_20134063_DEL [dm6]	CTGA	C	7.630e^-5	0.717	INTRON CG15322
X	20621281	X_20621281_SNP [dm3] X_20750254_SNP [dm6]	C	A	7.635e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11628555	3L_11628555_SNP [dm3] 3L_11635455_SNP [dm6]	C	T	7.694e^-5	0.717	INTRON CG32091
3R	19132181	3R_19132181_SNP [dm3] 3R_23306459_SNP [dm6]	A	G	7.723e^-5	0.717	INTRON pnt
2R	12670705	2R_12670705_SNP [dm3] 2R_16783200_SNP [dm6]	A	T	7.792e^-5	0.717	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12680909	2R_12680909_SNP [dm3] 2R_16793404_SNP [dm6]	G	A	7.822e^-5	0.717	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG5522 & 1 other
2R	17475403	2R_17475403_SNP [dm3] 2R_21587898_SNP [dm6]	G	A	7.829e^-5	0.717	INTERGENIC
2R	11495081	2R_11495081_SNP [dm3] 2R_15607576_SNP [dm6]	G	A	7.892e^-5	0.717	INTERGENIC
2R	12670791	2R_12670791_INS [dm3] 2R_16783286_INS [dm6]	A	ACATATA	7.981e^-5	0.717	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10723757	2L_10723757_SNP [dm3] 2L_10723757_SNP [dm6]	T	A	7.988e^-5	0.717	UPSTREAM CG6431 INTERGENIC
2L	19881312	2L_19881312_SNP [dm3] 2L_19881312_SNP [dm6]	A	G	8.012e^-5	0.717	INTRON sick
X	8585796	X_8585796_SNP [dm3] X_8691763_SNP [dm6]	G	A	8.059e^-5	0.717	UTR_3_PRIME Ogg1 DOWNSTREAM CG11294
3L	5325064	3L_5325064_SNP [dm3] 3L_5331964_SNP [dm6]	T	A	8.144e^-5	0.717	INTERGENIC
X	20606703	X_20606703_SNP [dm3] X_20735676_SNP [dm6]	A	C	8.199e^-5	0.717	NON_SYNONYMOUS_CODING CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11305647	2L_11305647_SNP [dm3] 2L_11305647_SNP [dm6]	G	A	8.205e^-5	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11305648	2L_11305648_SNP [dm3] 2L_11305648_SNP [dm6]	T	C	8.205e^-5	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
X	17976121	X_17976121_SNP [dm3] X_18082088_SNP [dm6]	G	A	8.213e^-5	0.717	SYNONYMOUS_CODING CG7536
3L	5495045	3L_5495045_SNP [dm3] 3L_5501945_SNP [dm6]	G	A	8.282e^-5	0.717	UPSTREAM CR44519 INTERGENIC
X	20056736	X_20056736_SNP [dm3] X_20162703_SNP [dm6]	C	G	8.291e^-5	0.717	UTR_5_PRIME Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8639831	3L_8639831_SNP [dm3] 3L_8646731_SNP [dm6]	T	C	8.490e^-5	0.717	START_GAINED CG13305 UTR_5_PRIME CG13305 UPSTREAM Pex7 DOWNSTREAM Arr2	TF binding site BDTNP1_TFBS_dl
X	9803377	X_9803377_SNP [dm3] X_9909344_SNP [dm6]	T	A	8.492e^-5	0.717	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
2R	17475405	2R_17475405_DEL [dm3] 2R_21587900_DEL [dm6]	GG	A	8.518e^-5	0.717	INTERGENIC
2R	10592170	2R_10592170_SNP [dm3] 2R_14704665_SNP [dm6]	T	G	8.599e^-5	0.717	INTRON mspo
2L	13791647	2L_13791647_INS [dm3] 2L_13791647_INS [dm6]	A	AT	8.655e^-5	0.717	INTRON CG16863	TF binding site mE1_TFBS_sens
2R	670107	2R_670107_SNP [dm3] 2R_4782602_SNP [dm6]	C	A	8.772e^-5	0.717	INTRON CR43281
3L	18209831	3L_18209831_SNP [dm3] 3L_18216731_SNP [dm6]	A	T	8.775e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12720955	2L_12720955_DEL [dm3] 2L_12720955_DEL [dm6]	ATAGTTAAGTGCAA...	A	8.787e^-5	0.717	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	12670084	2R_12670084_SNP [dm3] 2R_16782579_SNP [dm6]	T	C	8.793e^-5	0.717	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3370268	X_3370268_SNP [dm3] X_3476235_SNP [dm6]	A	G	8.816e^-5	0.717	DOWNSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3L	7162672	3L_7162672_SNP [dm3] 3L_7169572_SNP [dm6]	T	C	8.845e^-5	0.717	INTRON Dscam2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14754322	2R_14754322_INS [dm3] 2R_18866817_INS [dm6]	T	TTGCTTTTTCTT...	8.872e^-5	0.717	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
2R	3443251	2R_3443251_SNP [dm3] 2R_7555746_SNP [dm6]	T	G	8.874e^-5	0.717	INTRON Corin
2R	1033261	2R_1033261_DEL [dm3] 2R_5145756_DEL [dm6]	AA	A	8.923e^-5	0.717	INTRON Atf6
3L	8343745	3L_8343745_SNP [dm3] 3L_8350645_SNP [dm6]	G	A	8.942e^-5	0.717	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad
2R	14754408	2R_14754408_SNP [dm3] 2R_18866903_SNP [dm6]	A	G	8.981e^-5	0.717	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2L	13041211	2L_13041211_SNP [dm3] 2L_13041211_SNP [dm6]	T	C	9.076e^-5	0.717	INTRON CG9932
3L	15935877	3L_15935877_SNP [dm3] 3L_15942777_SNP [dm6]	T	A	9.077e^-5	0.717	INTRON Pka-C3
3R	18598600	3R_18598600_DEL [dm3] 3R_22772878_DEL [dm6]	GC	T	9.192e^-5	0.717	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
2R	17473506	2R_17473506_SNP [dm3] 2R_21586001_SNP [dm6]	C	A	9.199e^-5	0.717	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11171729	3L_11171729_SNP [dm3] 3L_11178629_SNP [dm6]	T	C	9.211e^-5	0.717	INTRON GlcAT-P	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3527902	2R_3527902_SNP [dm3] 2R_7640397_SNP [dm6]	C	T	9.233e^-5	0.717	SYNONYMOUS_CODING CG43340	TF binding site mE1_TFBS_cad
3L	11171736	3L_11171736_SNP [dm3] 3L_11178636_SNP [dm6]	A	G	9.255e^-5	0.717	INTRON GlcAT-P	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12660559	3L_12660559_SNP [dm3] 3L_12667459_SNP [dm6]	T	C	9.277e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16700327	X_16700327_SNP [dm3] X_16806294_SNP [dm6]	G	A	9.391e^-5	0.717	UTR_5_PRIME ppk28 DOWNSTREAM CG13005 EXON CR44053
3R	13959865	3R_13959865_SNP [dm3] 3R_18134143_SNP [dm6]	A	T	9.444e^-5	0.717	UTR_3_PRIME sr DOWNSTREAM sr
3L	2803765	3L_2803765_SNP [dm3] 3L_2803765_SNP [dm6]	T	C	9.549e^-5	0.717	INTRON CG43444
2R	12665817	2R_12665817_SNP [dm3] 2R_16778312_SNP [dm6]	A	G	9.559e^-5	0.717	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	632953	2R_632953_SNP [dm3] 2R_4745448_SNP [dm6]	T	C	9.566e^-5	0.717	INTRON conu
X	9119116	X_9119116_SNP [dm3] X_9225083_SNP [dm6]	G	A	9.648e^-5	0.717	UPSTREAM CG15370 INTERGENIC
3L	11217774	3L_11217774_SNP [dm3] 3L_11224674_SNP [dm6]	C	A	9.677e^-5	0.717	INTRON CG42671	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1909678	3L_1909678_SNP [dm3] 3L_1909678_SNP [dm6]	G	A	9.709e^-5	0.717	INTRON CG1887
X	12296954	X_12296954_SNP [dm3] X_12402921_SNP [dm6]	G	T	9.734e^-5	0.717	INTERGENIC
3L	11430103	3L_11430103_SNP [dm3] 3L_11437003_SNP [dm6]	A	G	9.826e^-5	0.717	DOWNSTREAM CR44548 INTERGENIC
2L	4078242	2L_4078242_SNP [dm3] 2L_4078242_SNP [dm6]	T	G	9.971e^-5	0.717	INTRON ed
2L	8936895	2L_8936895_SNP [dm3] 2L_8936895_SNP [dm6]	T	C	1.001e^-4	0.717	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12550731	2L_12550731_DEL [dm3] 2L_12550731_DEL [dm6]	AA	A	1.006e^-4	0.717	INTERGENIC
2R	4473184	2R_4473184_SNP [dm3] 2R_8585679_SNP [dm6]	C	T	1.010e^-4	0.717	UPSTREAM CG42326 INTERGENIC
3L	13434415	3L_13434415_SNP [dm3] 3L_13441315_SNP [dm6]	A	G	1.011e^-4	0.717	UPSTREAM CG10140 INTRON CG14109
2L	12829944	2L_12829944_SNP [dm3] 2L_12829944_SNP [dm6]	A	G	1.012e^-4	0.717	INTERGENIC
3R	16145866	3R_16145866_SNP [dm3] 3R_20320144_SNP [dm6]	A	T	1.016e^-4	0.717	INTRON CG42668
3L	11628460	3L_11628460_SNP [dm3] 3L_11635360_SNP [dm6]	T	A	1.017e^-4	0.717	INTRON CG32091
3R	25974169	3R_25974169_SNP [dm3] 3R_30148447_SNP [dm6]	G	T	1.023e^-4	0.717	INTRON AdoR
2L	11305492	2L_11305492_SNP [dm3] 2L_11305492_SNP [dm6]	C	T	1.027e^-4	0.717	INTERGENIC
3L	10277243	3L_10277243_SNP [dm3] 3L_10284143_SNP [dm6]	C	T	1.033e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	16937006	X_16937006_SNP [dm3] X_17042973_SNP [dm6]	C	T	1.039e^-4	0.717	INTRON CG45002
2L	11299383	2L_11299383_SNP [dm3] 2L_11299383_SNP [dm6]	C	T	1.044e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19068163	3R_19068163_SNP [dm3] 3R_23242441_SNP [dm6]	C	T	1.049e^-4	0.717	INTRON CG4467
X	18871397	X_18871397_SNP [dm3] X_18977364_SNP [dm6]	T	A	1.058e^-4	0.717	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6240466	2L_6240466_SNP [dm3] 2L_6240466_SNP [dm6]	A	T	1.059e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	17231213	2R_17231213_SNP [dm3] 2R_21343708_SNP [dm6]	T	A	1.066e^-4	0.717	INTRON CG15666
2R	18399732	2R_18399732_SNP [dm3] 2R_22512227_SNP [dm6]	A	G	1.074e^-4	0.717	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
3L	17257160	3L_17257160_SNP [dm3] 3L_17264060_SNP [dm6]	C	A	1.079e^-4	0.717	UPSTREAM CG13723 EXON CR43870
2L	8937098	2L_8937098_SNP [dm3] 2L_8937098_SNP [dm6]	G	A	1.083e^-4	0.717	UPSTREAM Tsp29Fb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15989563	2R_15989563_SNP [dm3] 2R_20102058_SNP [dm6]	A	T	1.083e^-4	0.717	INTERGENIC
2R	15747504	2R_15747504_SNP [dm3] 2R_19859999_SNP [dm6]	T	C	1.084e^-4	0.717	UPSTREAM CR44571 EXON CR44570	TF binding site mE1_TFBS_cad
3R	21386896	3R_21386896_SNP [dm3] 3R_25561174_SNP [dm6]	A	G	1.088e^-4	0.717	INTRON msi
X	17097212	X_17097212_SNP [dm3] X_17203179_SNP [dm6]	T	C	1.090e^-4	0.717	UTR_5_PRIME CG5070 UPSTREAM CG8918
3R	13984752	3R_13984752_SNP [dm3] 3R_18159030_SNP [dm6]	G	T	1.091e^-4	0.717	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
X	20884110	X_20884110_SNP [dm3] X_21013083_SNP [dm6]	A	T	1.093e^-4	0.717	INTERGENIC
2R	16175836	2R_16175836_SNP [dm3] 2R_20288331_SNP [dm6]	T	G	1.095e^-4	0.717	UTR_3_PRIME CG34199 DOWNSTREAM Cpr56F
3L	14959598	3L_14959598_SNP [dm3] 3L_14966498_SNP [dm6]	C	T	1.096e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15425524	3R_15425524_SNP [dm3] 3R_19599802_SNP [dm6]	C	T	1.096e^-4	0.717	UPSTREAM Cpr92A & 1 other INTERGENIC
3L	9439334	3L_9439334_SNP [dm3] 3L_9446234_SNP [dm6]	A	C	1.097e^-4	0.717	SYNONYMOUS_CODING CG33926 UPSTREAM CG3529	TF binding site mE1_TFBS_cad
3L	8314053	3L_8314053_SNP [dm3] 3L_8320953_SNP [dm6]	T	G	1.098e^-4	0.717	NON_SYNONYMOUS_CODING CG13670	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5492606	2L_5492606_SNP [dm3] 2L_5492606_SNP [dm6]	T	G	1.098e^-4	0.717	INTERGENIC
3R	25447601	3R_25447601_SNP [dm3] 3R_29621879_SNP [dm6]	T	C	1.106e^-4	0.717	INTERGENIC
2L	11322351	2L_11322351_SNP [dm3] 2L_11322351_SNP [dm6]	A	G	1.108e^-4	0.717	INTERGENIC
X	7086141	X_7086141_SNP [dm3] X_7192108_SNP [dm6]	C	T	1.110e^-4	0.717	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	12242473	2R_12242473_SNP [dm3] 2R_16354968_SNP [dm6]	C	A	1.110e^-4	0.717	INTRON CG30098
2L	10560877	2L_10560877_SNP [dm3] 2L_10560877_SNP [dm6]	A	G	1.112e^-4	0.717	INTRON Trim9
3L	11659313	3L_11659313_SNP [dm3] 3L_11666213_SNP [dm6]	C	A	1.113e^-4	0.717	INTRON CG32085
X	6100641	X_6100641_SNP [dm3] X_6206608_SNP [dm6]	T	A	1.121e^-4	0.717	INTERGENIC
X	12848994	X_12848994_SNP [dm3] X_12954961_SNP [dm6]	T	A	1.141e^-4	0.717	INTRON hec
2L	915211	2L_915211_SNP [dm3] 2L_915211_SNP [dm6]	A	G	1.151e^-4	0.717	NON_SYNONYMOUS_CODING GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	16994046	X_16994046_SNP [dm3] X_17100013_SNP [dm6]	T	A	1.155e^-4	0.717	INTRON CG4991
2L	11666234	2L_11666234_SNP [dm3] 2L_11666234_SNP [dm6]	T	A	1.160e^-4	0.717	DOWNSTREAM CR44481 INTERGENIC
2R	14091188	2R_14091188_SNP [dm3] 2R_18203683_SNP [dm6]	T	A	1.166e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11966146	2L_11966146_SNP [dm3] 2L_11966146_SNP [dm6]	A	T	1.166e^-4	0.717	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	761239	2R_761239_SNP [dm3] 2R_4873734_SNP [dm6]	A	G	1.173e^-4	0.717	INTERGENIC	transposable element FlyBase
3L	6567356	3L_6567356_SNP [dm3] 3L_6574256_SNP [dm6]	T	C	1.174e^-4	0.717	INTRON CG18769 & 1 other
2R	10685511	2R_10685511_SNP [dm3] 2R_14798006_SNP [dm6]	C	T	1.176e^-4	0.717	UPSTREAM kn INTRON kn
2R	10685513	2R_10685513_SNP [dm3] 2R_14798008_SNP [dm6]	A	T	1.176e^-4	0.717	UPSTREAM kn INTRON kn
2R	9123802	2R_9123802_SNP [dm3] 2R_13236297_SNP [dm6]	T	G	1.178e^-4	0.717	DOWNSTREAM CG4679 INTRON CG4676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	19576985	3L_19576985_SNP [dm3] 3L_19583885_SNP [dm6]	C	T	1.180e^-4	0.717	INTRON Shal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	766632	2R_766632_SNP [dm3] 2R_4879127_SNP [dm6]	G	T	1.190e^-4	0.717	INTERGENIC
2R	15989523	2R_15989523_SNP [dm3] 2R_20102018_SNP [dm6]	C	A	1.193e^-4	0.717	INTERGENIC
2L	16615307	2L_16615307_SNP [dm3] 2L_16615307_SNP [dm6]	T	A	1.194e^-4	0.717	INTRON CG42389
X	20289704	X_20289704_SNP [dm3] X_20418677_SNP [dm6]	G	T	1.224e^-4	0.717	NON_SYNONYMOUS_CODING Obp19c UPSTREAM Obp19d DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9526702	3L_9526702_SNP [dm3] 3L_9533602_SNP [dm6]	G	A	1.228e^-4	0.717	INTERGENIC
2R	5365756	2R_5365756_SNP [dm3] 2R_9478251_SNP [dm6]	A	C	1.228e^-4	0.717	UTR_3_PRIME Camta DOWNSTREAM Camta
3L	9714769	3L_9714769_SNP [dm3] 3L_9721669_SNP [dm6]	T	G	1.230e^-4	0.717	SYNONYMOUS_CODING nbs UTR_3_PRIME nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6101702	X_6101702_SNP [dm3] X_6207669_SNP [dm6]	A	C	1.233e^-4	0.717	INTERGENIC
2L	9926696	2L_9926696_SNP [dm3] 2L_9926696_SNP [dm6]	G	A	1.244e^-4	0.717	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
3L	1909694	3L_1909694_SNP [dm3] 3L_1909694_SNP [dm6]	G	T	1.244e^-4	0.717	INTRON CG1887
3L	8719363	3L_8719363_SNP [dm3] 3L_8726263_SNP [dm6]	G	A	1.250e^-4	0.717	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC
3R	6582596	3R_6582596_SNP [dm3] 3R_10756874_SNP [dm6]	A	G	1.252e^-4	0.717	SYNONYMOUS_CODING CG31272 EXON CR45015
3R	16144918	3R_16144918_SNP [dm3] 3R_20319196_SNP [dm6]	C	T	1.252e^-4	0.717	INTRON CG42668
X	9803224	X_9803224_DEL [dm3] X_9909191_DEL [dm6]	ATCTTAAGTA	A	1.254e^-4	0.717	UTR_3_PRIME CG1986 DOWNSTREAM CG1986	insulator Insulator_Class_II.mE01
2R	14755401	2R_14755401_SNP [dm3] 2R_18867896_SNP [dm6]	A	G	1.258e^-4	0.717	UTR_3_PRIME CG43109 DOWNSTREAM DptB
2R	763053	2R_763053_SNP [dm3] 2R_4875548_SNP [dm6]	G	A	1.258e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	1419729	3L_1419729_SNP [dm3] 3L_1419729_SNP [dm6]	G	A	1.261e^-4	0.717	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17697118	3L_17697118_SNP [dm3] 3L_17704018_SNP [dm6]	T	G	1.275e^-4	0.717	INTRON Ccn
2L	16615338	2L_16615338_SNP [dm3] 2L_16615338_SNP [dm6]	A	T	1.283e^-4	0.717	INTRON CG42389
3R	19068158	3R_19068158_SNP [dm3] 3R_23242436_SNP [dm6]	C	T	1.284e^-4	0.717	INTRON CG4467
2L	4296635	2L_4296635_SNP [dm3] 2L_4296635_SNP [dm6]	G	A	1.285e^-4	0.717	INTRON tutl
3L	16743013	3L_16743013_SNP [dm3] 3L_16749913_SNP [dm6]	T	G	1.285e^-4	0.717	INTERGENIC
3R	16145865	3R_16145865_SNP [dm3] 3R_20320143_SNP [dm6]	C	T	1.287e^-4	0.717	INTRON CG42668
2L	12722726	2L_12722726_SNP [dm3] 2L_12722726_SNP [dm6]	G	A	1.298e^-4	0.717	SYNONYMOUS_CODING MRP UPSTREAM CG5792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	19577313	3L_19577313_SNP [dm3] 3L_19584213_SNP [dm6]	T	C	1.300e^-4	0.717	DOWNSTREAM CG9231 INTRON Shal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5212528	3L_5212528_SNP [dm3] 3L_5219428_SNP [dm6]	C	T	1.302e^-4	0.717	INTRON shep
2R	16284782	2R_16284782_SNP [dm3] 2R_20397277_SNP [dm6]	A	G	1.309e^-4	0.717	INTERGENIC
2L	9463228	2L_9463228_SNP [dm3] 2L_9463228_SNP [dm6]	G	A	1.321e^-4	0.717	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	11305632	2L_11305632_SNP [dm3] 2L_11305632_SNP [dm6]	G	A	1.326e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11305675	2L_11305675_SNP [dm3] 2L_11305675_SNP [dm6]	C	T	1.326e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1510387	2L_1510387_SNP [dm3] 2L_1510387_SNP [dm6]	C	T	1.329e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17545556	2R_17545556_SNP [dm3] 2R_21658051_SNP [dm6]	G	A	1.336e^-4	0.717	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545559	2R_17545559_SNP [dm3] 2R_21658054_SNP [dm6]	G	C	1.336e^-4	0.717	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545568	2R_17545568_SNP [dm3] 2R_21658063_SNP [dm6]	A	G	1.336e^-4	0.717	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545583	2R_17545583_SNP [dm3] 2R_21658078_SNP [dm6]	C	T	1.336e^-4	0.717	UTR_5_PRIME CG10320 UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17545754	2R_17545754_SNP [dm3] 2R_21658249_SNP [dm6]	C	A	1.336e^-4	0.717	UTR_5_PRIME CG10320 UPSTREAM CG10320 DOWNSTREAM CG10082 & 1 other INTRON CG10320	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19482728	3R_19482728_SNP [dm3] 3R_23657006_SNP [dm6]	T	C	1.341e^-4	0.717	INTRON CG31145
3L	8896290	3L_8896290_SNP [dm3] 3L_8903190_SNP [dm6]	G	C	1.342e^-4	0.717	UPSTREAM tRNA:T:Psi INTRON TrpA1
3R	24540266	3R_24540266_DEL [dm3] 3R_28714544_DEL [dm6]	TCTCCACTCGGAGT...	T	1.345e^-4	0.717	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	9430908	3L_9430908_SNP [dm3] 3L_9437808_SNP [dm6]	T	G	1.364e^-4	0.717	SYNONYMOUS_CODING MTF-1 DOWNSTREAM Bet3 INTRON MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9808159	2L_9808159_SNP [dm3] 2L_9808159_SNP [dm6]	A	G	1.396e^-4	0.717	INTRON nAChRalpha6
2R	763362	2R_763362_SNP [dm3] 2R_4875857_SNP [dm6]	A	C	1.405e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	12670851	2R_12670851_SNP [dm3] 2R_16783346_SNP [dm6]	T	C	1.414e^-4	0.717	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16230581	X_16230581_SNP [dm3] X_16336548_SNP [dm6]	C	A	1.419e^-4	0.717	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11375379	2L_11375379_SNP [dm3] 2L_11375379_SNP [dm6]	T	C	1.426e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
2L	2683232	2L_2683232_SNP [dm3] 2L_2683232_SNP [dm6]	G	A	1.427e^-4	0.717	INTRON CG31690
3L	11171727	3L_11171727_SNP [dm3] 3L_11178627_SNP [dm6]	A	C	1.434e^-4	0.717	INTRON GlcAT-P	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8891499	3L_8891499_SNP [dm3] 3L_8898399_SNP [dm6]	C	T	1.434e^-4	0.717	INTRON TrpA1
2R	9505689	2R_9505689_SNP [dm3] 2R_13618184_SNP [dm6]	A	T	1.443e^-4	0.717	INTERGENIC
3L	8725826	3L_8725826_SNP [dm3] 3L_8732726_SNP [dm6]	C	T	1.454e^-4	0.717	DOWNSTREAM Prm & 1 other INTERGENIC
3L	11430101	3L_11430101_INS [dm3] 3L_11437001_INS [dm6]	A	ATAATA	1.455e^-4	0.717	DOWNSTREAM CR44548 INTERGENIC
2R	14754433	2R_14754433_DEL [dm3] 2R_18866928_DEL [dm6]	TAT	T	1.457e^-4	0.717	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	12648074	2R_12648074_SNP [dm3] 2R_16760569_SNP [dm6]	G	T	1.458e^-4	0.717	INTRON unc-104
2R	14678384	2R_14678384_SNP [dm3] 2R_18790879_SNP [dm6]	G	A	1.461e^-4	0.717	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17545626	2R_17545626_SNP [dm3] 2R_21658121_SNP [dm6]	A	T	1.464e^-4	0.717	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTRON CG10320	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8715864	3L_8715864_SNP [dm3] 3L_8722764_SNP [dm6]	A	G	1.464e^-4	0.717	SYNONYMOUS_CODING CG6511	TF binding site mE1_TFBS_sens
2L	9619002	2L_9619002_SNP [dm3] 2L_9619002_SNP [dm6]	T	G	1.477e^-4	0.717	INTRON GlcAT-S
2L	9619005	2L_9619005_DEL [dm3] 2L_9619005_DEL [dm6]	GT	A	1.477e^-4	0.717	INTRON GlcAT-S
2R	763961	2R_763961_SNP [dm3] 2R_4876456_SNP [dm6]	C	G	1.479e^-4	0.717	INTERGENIC	transposable element FlyBase
3L	8949995	3L_8949995_SNP [dm3] 3L_8956895_SNP [dm6]	T	A	1.485e^-4	0.717	DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	784188	2R_784188_SNP [dm3] 2R_4896683_SNP [dm6]	A	C	1.492e^-4	0.717	INTRON CG44102	transposable element FlyBase
2L	16303852	2L_16303852_SNP [dm3] 2L_16303852_SNP [dm6]	C	T	1.495e^-4	0.717	SYNONYMOUS_CODING c_2_M UPSTREAM CG5869
2L	11307388	2L_11307388_SNP [dm3] 2L_11307388_SNP [dm6]	C	A	1.496e^-4	0.717	UPSTREAM CR43721 INTERGENIC
2R	16949078	2R_16949078_SNP [dm3] 2R_21061573_SNP [dm6]	G	A	1.497e^-4	0.717	UTR_3_PRIME mRpL54 UPSTREAM Cht8	TF binding site mE1_TFBS_sens
2L	5514425	2L_5514425_SNP [dm3] 2L_5514425_SNP [dm6]	T	C	1.500e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14754367	2R_14754367_SNP [dm3] 2R_18866862_SNP [dm6]	C	T	1.509e^-4	0.717	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	14754411	2R_14754411_INS [dm3] 2R_18866906_INS [dm6]	T	TTGTAT	1.509e^-4	0.717	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	16949437	2R_16949437_SNP [dm3] 2R_21061932_SNP [dm6]	C	G	1.531e^-4	0.717	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
3L	8896420	3L_8896420_SNP [dm3] 3L_8903320_SNP [dm6]	A	C	1.533e^-4	0.717	UPSTREAM tRNA:T:Psi INTRON TrpA1
X	9613465	X_9613465_SNP [dm3] X_9719432_SNP [dm6]	T	A	1.545e^-4	0.717	INTERGENIC
2R	6483413	2R_6483413_INS [dm3] 2R_10595908_INS [dm6]	G	GATTTG	1.546e^-4	0.717	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
X	15874652	X_15874652_SNP [dm3] X_15980619_SNP [dm6]	A	G	1.548e^-4	0.717	SYNONYMOUS_CODING CG9170	TF binding site mE1_TFBS_cad
2R	14753586	2R_14753586_SNP [dm3] 2R_18866081_SNP [dm6]	G	A	1.549e^-4	0.717	SYNONYMOUS_CODING Dpt UPSTREAM CG43071
2L	11310303	2L_11310303_SNP [dm3] 2L_11310303_SNP [dm6]	A	G	1.551e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9728057	X_9728057_SNP [dm3] X_9834024_SNP [dm6]	G	T	1.553e^-4	0.717	INTRON CG32698
2L	2174571	2L_2174571_SNP [dm3] 2L_2174571_SNP [dm6]	T	C	1.560e^-4	0.717	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2175746	2L_2175746_SNP [dm3] 2L_2175746_SNP [dm6]	C	T	1.560e^-4	0.717	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26643922	3R_26643922_SNP [dm3] 3R_30818200_SNP [dm6]	T	C	1.574e^-4	0.717	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	22772780	3R_22772780_SNP [dm3] 3R_26947058_SNP [dm6]	T	C	1.577e^-4	0.717	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other
2R	673361	2R_673361_DEL [dm3] 2R_4785856_DEL [dm6]	TGAAATTTATTTT...	T	1.577e^-4	0.717	UTR_3_PRIME CG12547 DOWNSTREAM CG12547	transposable element FlyBase
2L	11375360	2L_11375360_SNP [dm3] 2L_11375360_SNP [dm6]	A	T	1.577e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
2L	18729036	2L_18729036_SNP [dm3] 2L_18729036_SNP [dm6]	G	A	1.583e^-4	0.717	INTRON CG10348
3L	5564365	3L_5564365_SNP [dm3] 3L_5571265_SNP [dm6]	T	G	1.585e^-4	0.717	INTRON Msr-110
2L	9646922	2L_9646922_SNP [dm3] 2L_9646922_SNP [dm6]	A	C	1.586e^-4	0.717	INTRON Apoltp
2R	10812470	2R_10812470_SNP [dm3] 2R_14924965_SNP [dm6]	T	A	1.587e^-4	0.717	INTRON CG10249
3L	3951414	3L_3951414_SNP [dm3] 3L_3951414_SNP [dm6]	G	T	1.589e^-4	0.717	NON_SYNONYMOUS_CODING CG14984
X	16993764	X_16993764_SNP [dm3] X_17099731_SNP [dm6]	C	T	1.593e^-4	0.717	INTRON CG4991
3L	1673111	3L_1673111_SNP [dm3] 3L_1673111_SNP [dm6]	A	T	1.595e^-4	0.717	UPSTREAM CG13930 INTERGENIC
X	10988542	X_10988542_SNP [dm3] X_11094509_SNP [dm6]	C	T	1.596e^-4	0.717	UTR_3_PRIME CG2061 EXON CR45604
3R	19131131	3R_19131131_SNP [dm3] 3R_23305409_SNP [dm6]	A	G	1.597e^-4	0.717	INTRON pnt
3L	10151074	3L_10151074_SNP [dm3] 3L_10157974_SNP [dm6]	C	A	1.599e^-4	0.717	INTRON dpr10
X	9730716	X_9730716_SNP [dm3] X_9836683_SNP [dm6]	A	G	1.599e^-4	0.717	SYNONYMOUS_CODING CG32698
2L	19129338	2L_19129338_SNP [dm3] 2L_19129338_SNP [dm6]	A	G	1.600e^-4	0.717	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	12127137	3L_12127137_SNP [dm3] 3L_12134037_SNP [dm6]	G	C	1.604e^-4	0.717	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2L	9918419	2L_9918419_DEL [dm3] 2L_9918419_DEL [dm6]	TT	T	1.610e^-4	0.717	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12872012	3L_12872012_SNP [dm3] 3L_12878912_SNP [dm6]	A	T	1.610e^-4	0.717	INTERGENIC
2R	6027906	2R_6027906_SNP [dm3] 2R_10140401_SNP [dm6]	T	C	1.610e^-4	0.717	SYNONYMOUS_CODING Or46a UPSTREAM Or46a EXON CR43467
2R	17378918	2R_17378918_SNP [dm3] 2R_21491413_SNP [dm6]	T	G	1.619e^-4	0.717	INTRON Fkbp14
3L	12523392	3L_12523392_SNP [dm3] 3L_12530292_SNP [dm6]	A	C	1.622e^-4	0.717	UPSTREAM nst DOWNSTREAM Tsf2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9733207	2L_9733207_SNP [dm3] 2L_9733207_SNP [dm6]	G	A	1.630e^-4	0.717	SYNONYMOUS_CODING Nckx30C
X	9185052	X_9185052_DEL [dm3] X_9291019_DEL [dm6]	TCGTGTTATCTTTCACATT...	T	1.631e^-4	0.717	INTRON lz	TF binding site mE1_TFBS_Kr
X	6100552	X_6100552_SNP [dm3] X_6206519_SNP [dm6]	T	C	1.646e^-4	0.717	INTERGENIC
2R	14752617	2R_14752617_SNP [dm3] 2R_18865112_SNP [dm6]	T	G	1.650e^-4	0.717	UPSTREAM Dpt DOWNSTREAM CG43070 INTRON CG43071
X	9125656	X_9125656_SNP [dm3] X_9231623_SNP [dm6]	A	T	1.650e^-4	0.717	SPLICE_SITE_REGION CG12121 SYNONYMOUS_CODING CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	9125704	X_9125704_SNP [dm3] X_9231671_SNP [dm6]	G	A	1.650e^-4	0.717	SYNONYMOUS_CODING CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	13790907	2L_13790907_SNP [dm3] 2L_13790907_SNP [dm6]	A	G	1.651e^-4	0.717	UPSTREAM CG16863 DOWNSTREAM CG31731 INTERGENIC
2L	12725183	2L_12725183_SNP [dm3] 2L_12725183_SNP [dm6]	A	T	1.654e^-4	0.717	INTRON MRP
X	20401848	X_20401848_SNP [dm3] X_20530821_SNP [dm6]	C	T	1.655e^-4	0.717	INTERGENIC
X	7086079	X_7086079_SNP [dm3] X_7192046_SNP [dm6]	A	G	1.658e^-4	0.717	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA
2L	11387247	2L_11387247_SNP [dm3] 2L_11387247_SNP [dm6]	G	A	1.662e^-4	0.717	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
2R	12085498	2R_12085498_SNP [dm3] 2R_16197993_SNP [dm6]	C	T	1.667e^-4	0.717	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16949061	2R_16949061_SNP [dm3] 2R_21061556_SNP [dm6]	T	C	1.670e^-4	0.717	UTR_3_PRIME mRpL54 UPSTREAM Cht8	TF binding site mE1_TFBS_sens
2R	6308590	2R_6308590_SNP [dm3] 2R_10421085_SNP [dm6]	C	G	1.671e^-4	0.717	UPSTREAM CG33474 & 1 other INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	3842082	3L_3842082_SNP [dm3] 3L_3842082_SNP [dm6]	C	G	1.677e^-4	0.717	UTR_3_PRIME enc DOWNSTREAM enc
3R	17358561	3R_17358561_SNP [dm3] 3R_21532839_SNP [dm6]	C	A	1.680e^-4	0.717	INTRON CR43372
X	22070806	X_22070806_SNP [dm3] X_22668970_SNP [dm6]	C	T	1.682e^-4	0.717	INTRON CR44997
2R	787845	2R_787845_SNP [dm3] 2R_4900340_SNP [dm6]	C	T	1.693e^-4	0.717	INTRON CG44102	transposable element FlyBase
2R	780675	2R_780675_SNP [dm3] 2R_4893170_SNP [dm6]	C	T	1.698e^-4	0.717	INTERGENIC	transposable element FlyBase
X	16947013	X_16947013_SNP [dm3] X_17052980_SNP [dm6]	T	A	1.698e^-4	0.717	INTRON CG45002
X	6100607	X_6100607_INS [dm3] X_6206574_INS [dm6]	G	GTGATAGGGATGGTTG...	1.705e^-4	0.717	INTERGENIC
2R	7402798	2R_7402798_SNP [dm3] 2R_11515293_SNP [dm6]	A	T	1.706e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6087746	X_6087746_SNP [dm3] X_6193713_SNP [dm6]	G	A	1.707e^-4	0.717	INTERGENIC
3L	4241831	3L_4241831_INS [dm3] 3L_4241831_INS [dm6]	C	CTAAAGAATACTTTTAACTT...	1.712e^-4	0.717	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3363483	2R_3363483_SNP [dm3] 2R_7475978_SNP [dm6]	A	C	1.713e^-4	0.717	INTRON Aldh-III
3L	10616831	3L_10616831_SNP [dm3] 3L_10623731_SNP [dm6]	C	A	1.715e^-4	0.717	UPSTREAM CG42521 DOWNSTREAM CG43127 INTERGENIC
3L	11430091	3L_11430091_DEL [dm3] 3L_11436991_DEL [dm6]	CGT	C	1.717e^-4	0.717	DOWNSTREAM CR44548 INTERGENIC
2L	855287	2L_855287_SNP [dm3] 2L_855287_SNP [dm6]	T	G	1.718e^-4	0.717	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	17368817	X_17368817_SNP [dm3] X_17474784_SNP [dm6]	C	T	1.724e^-4	0.717	INTRON CG43658
X	14842146	X_14842146_DEL [dm3] X_14948113_DEL [dm6]	CC	C	1.750e^-4	0.717	INTRON pdgy	TF binding site mE1_TFBS_HSA
3R	6438038	3R_6438038_SNP [dm3] 3R_10612316_SNP [dm6]	A	C	1.756e^-4	0.717	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15989705	2R_15989705_SNP [dm3] 2R_20102200_SNP [dm6]	C	T	1.757e^-4	0.717	INTERGENIC
2L	4296683	2L_4296683_SNP [dm3] 2L_4296683_SNP [dm6]	G	T	1.770e^-4	0.717	INTRON tutl
2R	3679618	2R_3679618_SNP [dm3] 2R_7792113_SNP [dm6]	T	G	1.771e^-4	0.717	UTR_3_PRIME Gapdh1 DOWNSTREAM CG12824	TF binding site mE1_TFBS_HSA
2L	4763247	2L_4763247_SNP [dm3] 2L_4763247_SNP [dm6]	C	T	1.776e^-4	0.717	SYNONYMOUS_CODING CG42523 INTRON CG15630
2R	782654	2R_782654_SNP [dm3] 2R_4895149_SNP [dm6]	A	T	1.777e^-4	0.717	DOWNSTREAM CG44102 INTERGENIC	transposable element FlyBase
2R	16545394	2R_16545394_SNP [dm3] 2R_20657889_SNP [dm6]	T	A	1.787e^-4	0.717	UPSTREAM tRNA:CR30155 DOWNSTREAM tRNA:CR30211 INTRON Lrt
3L	1589984	3L_1589984_SNP [dm3] 3L_1589984_SNP [dm6]	A	T	1.787e^-4	0.717	INTRON CG13917
X	20308829	X_20308829_SNP [dm3] X_20437802_SNP [dm6]	C	G	1.789e^-4	0.717	INTRON CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13434558	3L_13434558_SNP [dm3] 3L_13441458_SNP [dm6]	A	G	1.790e^-4	0.717	UPSTREAM CG10140 INTRON CG14109	TF binding site mE1_TFBS_HSA
X	16292223	X_16292223_SNP [dm3] X_16398190_SNP [dm6]	C	T	1.796e^-4	0.717	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
3L	9524156	3L_9524156_DEL [dm3] 3L_9531056_DEL [dm6]	TT	T	1.805e^-4	0.717	SPLICE_SITE_REGION Or67a INTRON Or67a
X	6100540	X_6100540_DEL [dm3] X_6206507_DEL [dm6]	GATGTTACCCC...	G	1.812e^-4	0.717	INTERGENIC
2R	14509614	2R_14509614_SNP [dm3] 2R_18622109_SNP [dm6]	G	T	1.821e^-4	0.717	SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9714826	3L_9714826_SNP [dm3] 3L_9721726_SNP [dm6]	A	G	1.821e^-4	0.717	NON_SYNONYMOUS_CODING nbs UTR_3_PRIME nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16947000	X_16947000_SNP [dm3] X_17052967_SNP [dm6]	T	C	1.823e^-4	0.717	INTRON CG45002
2R	15070797	2R_15070797_SNP [dm3] 2R_19183292_SNP [dm6]	C	A	1.826e^-4	0.717	INTRON hppy
3L	2806270	3L_2806270_SNP [dm3] 3L_2806270_SNP [dm6]	A	C	1.830e^-4	0.717	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	11375378	2L_11375378_SNP [dm3] 2L_11375378_SNP [dm6]	G	T	1.830e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
2R	18765405	2R_18765405_SNP [dm3] 2R_22877882_SNP [dm6]	A	G	1.838e^-4	0.717	INTRON PIP5K59B
2L	3222769	2L_3222769_SNP [dm3] 2L_3222769_SNP [dm6]	T	A	1.841e^-4	0.717	INTERGENIC
3L	12126790	3L_12126790_SNP [dm3] 3L_12133690_SNP [dm6]	C	T	1.845e^-4	0.717	SYNONYMOUS_CODING CG11534 DOWNSTREAM CG5645	TF binding site BDTNP1_TFBS_twi
X	3253267	X_3253267_MNP [dm3] X_3359234_MNP [dm6]	GTC	AAT	1.850e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10128675	3L_10128675_SNP [dm3] 3L_10135575_SNP [dm6]	T	C	1.854e^-4	0.717	INTRON dpr6	TF binding site mE1_TFBS_chinmo
3R	17358547	3R_17358547_SNP [dm3] 3R_21532825_SNP [dm6]	T	G	1.864e^-4	0.717	INTRON CR43372
3R	20371450	3R_20371450_SNP [dm3] 3R_24545728_SNP [dm6]	G	A	1.864e^-4	0.717	INTRON Esyt2	TF binding site mE1_TFBS_bab1
2R	17929295	2R_17929295_SNP [dm3] 2R_22041790_SNP [dm6]	T	A	1.867e^-4	0.717	UTR_3_PRIME PpD5
3L	13434404	3L_13434404_INS [dm3] 3L_13441304_INS [dm6]	G	CTT	1.870e^-4	0.717	UPSTREAM CG10140 INTRON CG14109
X	16479392	X_16479392_DEL [dm3] X_16585359_DEL [dm6]	AGGAATAA	A	1.872e^-4	0.717	INTRON CanA-14F
2R	749900	2R_749900_SNP [dm3] 2R_4862395_SNP [dm6]	T	C	1.877e^-4	0.717	INTERGENIC	transposable element FlyBase
3L	10143029	3L_10143029_SNP [dm3] 3L_10149929_SNP [dm6]	T	A	1.884e^-4	0.717	INTRON dpr10
2L	2045950	2L_2045950_SNP [dm3] 2L_2045950_SNP [dm6]	T	G	1.887e^-4	0.717	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	24418025	3R_24418025_SNP [dm3] 3R_28592303_SNP [dm6]	G	A	1.890e^-4	0.717	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	11921450	2R_11921450_SNP [dm3] 2R_16033945_SNP [dm6]	G	A	1.899e^-4	0.717	INTRON SP2353
3L	12084920	3L_12084920_SNP [dm3] 3L_12091820_SNP [dm6]	G	A	1.899e^-4	0.717	INTERGENIC
2L	16052621	2L_16052621_SNP [dm3] 2L_16052621_SNP [dm6]	A	C	1.903e^-4	0.717	INTRON beat-Ia
3R	16145881	3R_16145881_SNP [dm3] 3R_20320159_SNP [dm6]	C	T	1.907e^-4	0.717	INTRON CG42668
3R	19253403	3R_19253403_SNP [dm3] 3R_23427681_SNP [dm6]	C	A	1.908e^-4	0.717	INTRON CG4374
X	8716998	X_8716998_SNP [dm3] X_8822965_SNP [dm6]	T	G	1.911e^-4	0.717	INTERGENIC
3L	6567363	3L_6567363_INS [dm3] 3L_6574263_INS [dm6]	T	TCTCTCTTT	1.915e^-4	0.717	INTRON CG18769 & 1 other
3L	5564366	3L_5564366_SNP [dm3] 3L_5571266_SNP [dm6]	T	G	1.915e^-4	0.717	INTRON Msr-110
2R	12670426	2R_12670426_SNP [dm3] 2R_16782921_SNP [dm6]	C	T	1.916e^-4	0.717	UTR_3_PRIME resilin UPSTREAM CG5522	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8502842	X_8502842_SNP [dm3] X_8608809_SNP [dm6]	C	G	1.920e^-4	0.717	INTERGENIC
3R	17522253	3R_17522253_SNP [dm3] 3R_21696531_SNP [dm6]	T	C	1.922e^-4	0.717	INTRON CG31176
X	753976	X_753976_SNP [dm3] X_859943_SNP [dm6]	C	T	1.925e^-4	0.717	INTRON CG43867
2L	20875017	2L_20875017_SNP [dm3] 2L_20875017_SNP [dm6]	T	C	1.925e^-4	0.717	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15197747	2L_15197747_SNP [dm3] 2L_15197747_SNP [dm6]	T	C	1.925e^-4	0.717	INTRON CG4168
2R	14753589	2R_14753589_SNP [dm3] 2R_18866084_SNP [dm6]	C	A	1.948e^-4	0.717	NON_SYNONYMOUS_CODING Dpt UPSTREAM CG43071
X	4913333	X_4913333_SNP [dm3] X_5019300_SNP [dm6]	A	G	1.951e^-4	0.717	INTRON CR44833
2L	855260	2L_855260_SNP [dm3] 2L_855260_SNP [dm6]	T	C	1.953e^-4	0.717	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4074310	3L_4074310_SNP [dm3] 3L_4074310_SNP [dm6]	T	C	1.957e^-4	0.717	UTR_3_PRIME Gad1 UPSTREAM Faa
2L	9463504	2L_9463504_SNP [dm3] 2L_9463504_SNP [dm6]	A	C	1.957e^-4	0.717	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	18399769	2R_18399769_DEL [dm3] 2R_22512264_DEL [dm6]	AGTTCTTTGT	C	1.961e^-4	0.717	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17929309	2R_17929309_SNP [dm3] 2R_22041804_SNP [dm6]	C	A	1.964e^-4	0.717	UTR_3_PRIME PpD5
2L	7688698	2L_7688698_SNP [dm3] 2L_7688698_SNP [dm6]	C	T	1.965e^-4	0.717	SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
2R	12679368	2R_12679368_SNP [dm3] 2R_16791863_SNP [dm6]	G	C	1.967e^-4	0.717	UTR_3_PRIME CG5522 UPSTREAM CG15919 DOWNSTREAM CG5522
2R	12671221	2R_12671221_SNP [dm3] 2R_16783716_SNP [dm6]	G	T	1.984e^-4	0.717	START_GAINED CG5522 UTR_5_PRIME CG5522 DOWNSTREAM resilin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	12886294	3L_12886294_SNP [dm3] 3L_12893194_SNP [dm6]	G	T	2.000e^-4	0.717	INTRON CG14118
2R	678303	2R_678303_SNP [dm3] 2R_4790798_SNP [dm6]	T	C	2.000e^-4	0.717	INTERGENIC	transposable element FlyBase
X	15407946	X_15407946_SNP [dm3] X_15513913_SNP [dm6]	A	G	2.002e^-4	0.717	SYNONYMOUS_CODING Ac13E	TF binding site mE1_TFBS_sens
3L	12173510	3L_12173510_SNP [dm3] 3L_12180410_SNP [dm6]	C	T	2.003e^-4	0.717	INTRON CAH2
3L	11659330	3L_11659330_INS [dm3] 3L_11666230_INS [dm6]	A	GTTATATAAGAT...	2.010e^-4	0.717	INTRON CG32085
X	20762964	X_20762964_SNP [dm3] X_20891937_SNP [dm6]	C	T	2.011e^-4	0.717	INTRON shakB
X	20767232	X_20767232_SNP [dm3] X_20896205_SNP [dm6]	A	C	2.011e^-4	0.717	INTRON shakB	TF binding site BDTNP1_TFBS_dl
X	20767244	X_20767244_SNP [dm3] X_20896217_SNP [dm6]	T	A	2.011e^-4	0.717	INTRON shakB	TF binding site BDTNP1_TFBS_dl
3R	17023107	3R_17023107_SNP [dm3] 3R_21197385_SNP [dm6]	T	C	2.015e^-4	0.717	INTRON SNF4Agamma
3L	19277709	3L_19277709_SNP [dm3] 3L_19284609_SNP [dm6]	T	A	2.026e^-4	0.717	SYNONYMOUS_CODING Gbs-76A
3R	22993931	3R_22993931_SNP [dm3] 3R_27168209_SNP [dm6]	C	A	2.028e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	924767	X_924767_INS [dm3] X_1030734_INS [dm6]	T	TGTTTGGTATTAGAGTGCAA...	2.039e^-4	0.717	UPSTREAM CG33082 & 2 others INTRON su_w[a]_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	3772050	2R_3772050_SNP [dm3] 2R_7884545_SNP [dm6]	G	A	2.040e^-4	0.717	INTRON Dgk
X	10256595	X_10256595_DEL [dm3] X_10362562_DEL [dm6]	TTCTT	T	2.041e^-4	0.717	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26714987	3R_26714987_SNP [dm3] 3R_30889265_SNP [dm6]	T	G	2.043e^-4	0.717	UPSTREAM Sap-r INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26080981	3R_26080981_SNP [dm3] 3R_30255259_SNP [dm6]	C	A	2.047e^-4	0.717	INTERGENIC
3L	1908834	3L_1908834_INS [dm3] 3L_1908834_INS [dm6]	C	CC	2.049e^-4	0.717	INTRON CG1887
2R	19305435	2R_19305435_INS [dm3] 2R_23417912_INS [dm6]	A	AA	2.049e^-4	0.717	DOWNSTREAM CG30411 INTRON CG9812
X	19954320	X_19954320_INS [dm3] X_20060287_INS [dm6]	C	CTC	2.050e^-4	0.717	INTRON Dop2R
X	19954326	X_19954326_SNP [dm3] X_20060293_SNP [dm6]	G	C	2.050e^-4	0.717	INTRON Dop2R
2L	7946269	2L_7946269_INS [dm3] 2L_7946269_INS [dm6]	T	TT	2.051e^-4	0.717	INTRON Snoo
2L	9981354	2L_9981354_INS [dm3] 2L_9981354_INS [dm6]	G	CGGTT	2.053e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	9303851	3L_9303851_DEL [dm3] 3L_9310751_DEL [dm6]	TT	T	2.062e^-4	0.717	INTERGENIC
2R	676855	2R_676855_SNP [dm3] 2R_4789350_SNP [dm6]	T	A	2.064e^-4	0.717	UPSTREAM CG12547 INTERGENIC	transposable element FlyBase
3L	913020	3L_913020_SNP [dm3] 3L_913020_SNP [dm6]	C	T	2.068e^-4	0.717	DOWNSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26080626	3R_26080626_SNP [dm3] 3R_30254904_SNP [dm6]	T	C	2.072e^-4	0.717	DOWNSTREAM CG18404 INTERGENIC
2R	6073743	2R_6073743_SNP [dm3] 2R_10186238_SNP [dm6]	T	C	2.072e^-4	0.717	INTRON KCNQ
X	16947190	X_16947190_SNP [dm3] X_17053157_SNP [dm6]	G	T	2.075e^-4	0.717	INTRON CG45002
2R	6490443	2R_6490443_SNP [dm3] 2R_10602938_SNP [dm6]	G	T	2.075e^-4	0.717	INTRON psq	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	839618	2L_839618_SNP [dm3] 2L_839618_SNP [dm6]	G	A	2.075e^-4	0.717	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12670051	2R_12670051_SNP [dm3] 2R_16782546_SNP [dm6]	A	T	2.080e^-4	0.717	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14614886	X_14614886_SNP [dm3] X_14720853_SNP [dm6]	G	A	2.083e^-4	0.717	INTRON NetB
2R	3442689	2R_3442689_SNP [dm3] 2R_7555184_SNP [dm6]	C	G	2.088e^-4	0.717	SYNONYMOUS_CODING Corin
3L	17473336	3L_17473336_SNP [dm3] 3L_17480236_SNP [dm6]	G	C	2.094e^-4	0.717	UTR_3_PRIME CG6333 DOWNSTREAM qjt
2R	9678283	2R_9678283_INS [dm3] 2R_13790778_INS [dm6]	A	TCAG	2.095e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
X	7903822	X_7903822_SNP [dm3] X_8009789_SNP [dm6]	T	A	2.098e^-4	0.717	INTRON Tbh
3R	26715031	3R_26715031_SNP [dm3] 3R_30889309_SNP [dm6]	T	C	2.103e^-4	0.717	UPSTREAM Sap-r INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10768190	3L_10768190_SNP [dm3] 3L_10775090_SNP [dm6]	G	A	2.112e^-4	0.717	INTERGENIC
2L	3201173	2L_3201173_SNP [dm3] 2L_3201173_SNP [dm6]	C	G	2.121e^-4	0.717	UPSTREAM CG34393 INTERGENIC
3R	10807234	3R_10807234_SNP [dm3] 3R_14981512_SNP [dm6]	C	G	2.130e^-4	0.717	INTERGENIC
2L	1085176	2L_1085176_SNP [dm3] 2L_1085176_SNP [dm6]	C	G	2.138e^-4	0.717	UTR_3_PRIME Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4001138	2L_4001138_SNP [dm3] 2L_4001138_SNP [dm6]	C	G	2.138e^-4	0.717	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	13883478	2L_13883478_SNP [dm3] 2L_13883478_SNP [dm6]	A	C	2.148e^-4	0.717	INTRON CenG1A
X	7086135	X_7086135_SNP [dm3] X_7192102_SNP [dm6]	C	A	2.153e^-4	0.717	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	16947018	X_16947018_DEL [dm3] X_17052985_DEL [dm6]	TTGTAATATATTATATATAT...	GG	2.161e^-4	0.717	INTRON CG45002
3L	11628450	3L_11628450_INS [dm3] 3L_11635350_INS [dm6]	G	GTTTTAACTTCAG...	2.170e^-4	0.717	INTRON CG32091
2R	787859	2R_787859_SNP [dm3] 2R_4900354_SNP [dm6]	G	A	2.171e^-4	0.717	INTRON CG44102	transposable element FlyBase
3R	15312711	3R_15312711_SNP [dm3] 3R_19486989_SNP [dm6]	C	T	2.179e^-4	0.717	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	781888	2R_781888_SNP [dm3] 2R_4894383_SNP [dm6]	T	G	2.183e^-4	0.717	INTERGENIC	transposable element FlyBase
3L	2779714	3L_2779714_SNP [dm3] 3L_2779714_SNP [dm6]	G	T	2.183e^-4	0.717	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	761838	2R_761838_SNP [dm3] 2R_4874333_SNP [dm6]	C	A	2.186e^-4	0.717	INTERGENIC	transposable element FlyBase
X	12588122	X_12588122_SNP [dm3] X_12694089_SNP [dm6]	G	T	2.194e^-4	0.717	INTRON Smr	TF binding site mE1_TFBS_inv
X	7903792	X_7903792_SNP [dm3] X_8009759_SNP [dm6]	G	A	2.195e^-4	0.717	INTRON Tbh
2R	16624226	2R_16624226_SNP [dm3] 2R_20736721_SNP [dm6]	A	G	2.196e^-4	0.717	INTRON dpr
2R	1081372	2R_1081372_SNP [dm3] 2R_5193867_SNP [dm6]	C	A	2.203e^-4	0.717	INTRON Nipped-A
3R	21179838	3R_21179838_SNP [dm3] 3R_25354116_SNP [dm6]	T	C	2.205e^-4	0.717	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11430006	3L_11430006_SNP [dm3] 3L_11436906_SNP [dm6]	T	G	2.206e^-4	0.717	DOWNSTREAM CR44548 INTERGENIC
2L	15455077	2L_15455077_SNP [dm3] 2L_15455077_SNP [dm6]	T	C	2.207e^-4	0.717	INTERGENIC
2R	682136	2R_682136_SNP [dm3] 2R_4794631_SNP [dm6]	G	A	2.213e^-4	0.717	INTERGENIC
2R	684455	2R_684455_SNP [dm3] 2R_4796950_SNP [dm6]	G	T	2.213e^-4	0.717	INTERGENIC	transposable element FlyBase
3L	8605017	3L_8605017_SNP [dm3] 3L_8611917_SNP [dm6]	T	G	2.216e^-4	0.717	INTRON CG6282
X	18412816	X_18412816_SNP [dm3] X_18518783_SNP [dm6]	G	A	2.217e^-4	0.717	INTRON Bx & 1 other	TF binding site mE1_TFBS_chinmo
3L	17471887	3L_17471887_SNP [dm3] 3L_17478787_SNP [dm6]	G	A	2.218e^-4	0.717	NON_SYNONYMOUS_CODING CG13733 UPSTREAM qjt
3R	15428624	3R_15428624_SNP [dm3] 3R_19602902_SNP [dm6]	T	A	2.221e^-4	0.717	UPSTREAM CG7342 DOWNSTREAM CG7333 INTERGENIC
3L	16282719	3L_16282719_SNP [dm3] 3L_16289619_SNP [dm6]	T	G	2.225e^-4	0.717	DOWNSTREAM CG13045 INTERGENIC
X	17194335	X_17194335_SNP [dm3] X_17300302_SNP [dm6]	A	G	2.226e^-4	0.717	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19333143	3R_19333143_SNP [dm3] 3R_23507421_SNP [dm6]	A	T	2.233e^-4	0.717	UTR_5_PRIME CG34289
X	20040113	X_20040113_SNP [dm3] X_20146080_SNP [dm6]	A	T	2.235e^-4	0.717	INTERGENIC
2L	9777436	2L_9777436_SNP [dm3] 2L_9777436_SNP [dm6]	A	C	2.235e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15966871	X_15966871_SNP [dm3] X_16072838_SNP [dm6]	G	A	2.242e^-4	0.717	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2399650	3L_2399650_SNP [dm3] 3L_2399650_SNP [dm6]	C	T	2.247e^-4	0.717	UPSTREAM CG45186 INTRON CG45186
2L	8965717	2L_8965717_SNP [dm3] 2L_8965717_SNP [dm6]	C	A	2.247e^-4	0.717	SPLICE_SITE_REGION CG32984 INTRON CG32984
X	5071240	X_5071240_SNP [dm3] X_5177207_SNP [dm6]	T	C	2.256e^-4	0.717	INTRON rg & 1 other
2R	16460414	2R_16460414_SNP [dm3] 2R_20572909_SNP [dm6]	T	A	2.259e^-4	0.717	INTRON qsm
X	16054653	X_16054653_SNP [dm3] X_16160620_SNP [dm6]	C	A	2.260e^-4	0.717	INTERGENIC
2L	7088882	2L_7088882_SNP [dm3] 2L_7088882_SNP [dm6]	C	A	2.261e^-4	0.717	INTERGENIC
2L	2045958	2L_2045958_SNP [dm3] 2L_2045958_SNP [dm6]	A	G	2.265e^-4	0.717	SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	678603	2R_678603_SNP [dm3] 2R_4791098_SNP [dm6]	G	C	2.274e^-4	0.717	INTERGENIC	transposable element FlyBase
3L	16532177	3L_16532177_SNP [dm3] 3L_16539077_SNP [dm6]	C	A	2.282e^-4	0.717	INTRON CG43373
2R	788437	2R_788437_SNP [dm3] 2R_4900932_SNP [dm6]	T	A	2.287e^-4	0.717	INTRON CG44102	transposable element FlyBase
2L	18742162	2L_18742162_SNP [dm3] 2L_18742162_SNP [dm6]	G	A	2.288e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12670480	2R_12670480_SNP [dm3] 2R_16782975_SNP [dm6]	C	T	2.297e^-4	0.717	UTR_3_PRIME resilin UPSTREAM CG5522	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26966170	3R_26966170_SNP [dm3] 3R_31140448_SNP [dm6]	G	A	2.301e^-4	0.717	INTRON Gycbeta100B
2R	13527319	2R_13527319_SNP [dm3] 2R_17639814_SNP [dm6]	T	A	2.306e^-4	0.717	UPSTREAM CG10936 INTERGENIC
3R	14182195	3R_14182195_SNP [dm3] 3R_18356473_SNP [dm6]	T	A	2.309e^-4	0.717	INTRON CG15803
2R	12670767	2R_12670767_SNP [dm3] 2R_16783262_SNP [dm6]	A	T	2.311e^-4	0.717	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17880751	3R_17880751_SNP [dm3] 3R_22055029_SNP [dm6]	C	G	2.312e^-4	0.717	INTRON how
3R	13523965	3R_13523965_SNP [dm3] 3R_17698243_SNP [dm6]	C	T	2.315e^-4	0.717	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_chinmo
2R	10709128	2R_10709128_SNP [dm3] 2R_14821623_SNP [dm6]	G	A	2.315e^-4	0.717	INTERGENIC
2L	7957859	2L_7957859_SNP [dm3] 2L_7957859_SNP [dm6]	A	T	2.321e^-4	0.717	INTRON Snoo
2L	11230628	2L_11230628_SNP [dm3] 2L_11230628_SNP [dm6]	C	G	2.321e^-4	0.717	INTRON ab
2R	9825769	2R_9825769_SNP [dm3] 2R_13938264_SNP [dm6]	G	C	2.333e^-4	0.717	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9008103	3L_9008103_SNP [dm3] 3L_9015003_SNP [dm6]	T	C	2.337e^-4	0.717	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14401875	X_14401875_SNP [dm3] X_14507842_SNP [dm6]	A	G	2.340e^-4	0.717	INTERGENIC
3R	21753978	3R_21753978_SNP [dm3] 3R_25928256_SNP [dm6]	T	G	2.341e^-4	0.717	INTRON CCAP-R
X	14401873	X_14401873_SNP [dm3] X_14507840_SNP [dm6]	T	G	2.344e^-4	0.717	INTERGENIC
3R	13984641	3R_13984641_SNP [dm3] 3R_18158919_SNP [dm6]	A	G	2.346e^-4	0.717	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3R	19070190	3R_19070190_SNP [dm3] 3R_23244468_SNP [dm6]	C	G	2.350e^-4	0.717	INTRON CG4467
X	20056734	X_20056734_SNP [dm3] X_20162701_SNP [dm6]	C	A	2.351e^-4	0.717	UTR_5_PRIME Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20056846	X_20056846_SNP [dm3] X_20162813_SNP [dm6]	G	C	2.351e^-4	0.717	UTR_5_PRIME Phf7 UPSTREAM Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	603199	2R_603199_SNP [dm3] 2R_4715694_SNP [dm6]	A	T	2.353e^-4	0.717	INTRON Nipped-B	transposable element FlyBase
2R	11074039	2R_11074039_SNP [dm3] 2R_15186534_SNP [dm6]	C	T	2.358e^-4	0.717	DOWNSTREAM CG43068 INTRON igl
X	9228688	X_9228688_SNP [dm3] X_9334655_SNP [dm6]	G	A	2.358e^-4	0.717	INTRON CG34449	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11376410	2L_11376410_SNP [dm3] 2L_11376410_SNP [dm6]	T	C	2.359e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
2R	18967600	2R_18967600_SNP [dm3] 2R_23080077_SNP [dm6]	T	A	2.367e^-4	0.717	UPSTREAM Gr59a & 1 other INTERGENIC
2L	11322588	2L_11322588_SNP [dm3] 2L_11322588_SNP [dm6]	G	A	2.372e^-4	0.717	INTERGENIC
2L	9773943	2L_9773943_SNP [dm3] 2L_9773943_SNP [dm6]	A	G	2.373e^-4	0.717	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2R	12367120	2R_12367120_SNP [dm3] 2R_16479615_SNP [dm6]	T	G	2.376e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	664609	2R_664609_INS [dm3] 2R_4777104_INS [dm6]	T	TAAATTT	2.379e^-4	0.717	INTERGENIC	transposable element FlyBase
2R	16898671	2R_16898671_SNP [dm3] 2R_21011166_SNP [dm6]	T	C	2.386e^-4	0.717	SYNONYMOUS_CODING grau UPSTREAM CG9346	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7941875	X_7941875_SNP [dm3] X_8047842_SNP [dm6]	A	G	2.387e^-4	0.717	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5900760	2L_5900760_SNP [dm3] 2L_5900760_SNP [dm6]	A	T	2.387e^-4	0.717	UPSTREAM CR44579 INTERGENIC
2L	9104303	2L_9104303_SNP [dm3] 2L_9104303_SNP [dm6]	G	A	2.391e^-4	0.717	INTERGENIC
3L	2804733	3L_2804733_SNP [dm3] 3L_2804733_SNP [dm6]	T	C	2.394e^-4	0.717	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	22804564	3R_22804564_SNP [dm3] 3R_26978842_SNP [dm6]	C	A	2.398e^-4	0.717	NON_SYNONYMOUS_CODING CG14253 DOWNSTREAM CG5521
3L	13183610	3L_13183610_SNP [dm3] 3L_13190510_SNP [dm6]	T	A	2.422e^-4	0.717	INTERGENIC
3R	17358544	3R_17358544_SNP [dm3] 3R_21532822_SNP [dm6]	T	A	2.423e^-4	0.717	INTRON CR43372
X	7974752	X_7974752_DEL [dm3] X_8080719_DEL [dm6]	TCT	T	2.428e^-4	0.717	INTRON CG2254	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6284080	X_6284080_SNP [dm3] X_6390047_SNP [dm6]	C	T	2.434e^-4	0.717	INTERGENIC
3R	19386014	3R_19386014_SNP [dm3] 3R_23560292_SNP [dm6]	T	A	2.434e^-4	0.717	INTRON beat-IV
2R	666954	2R_666954_SNP [dm3] 2R_4779449_SNP [dm6]	A	T	2.434e^-4	0.717	DOWNSTREAM CR43281 INTERGENIC	transposable element FlyBase
3L	10143019	3L_10143019_SNP [dm3] 3L_10149919_SNP [dm6]	A	G	2.436e^-4	0.717	INTRON dpr10
3R	24217853	3R_24217853_SNP [dm3] 3R_28392131_SNP [dm6]	G	T	2.437e^-4	0.717	INTERGENIC
2R	13837920	2R_13837920_SNP [dm3] 2R_17950415_SNP [dm6]	G	C	2.439e^-4	0.717	INTERGENIC
X	16946999	X_16946999_SNP [dm3] X_17052966_SNP [dm6]	A	T	2.440e^-4	0.717	INTRON CG45002
2R	668598	2R_668598_SNP [dm3] 2R_4781093_SNP [dm6]	T	A	2.440e^-4	0.717	INTRON CR43281
2R	12670067	2R_12670067_SNP [dm3] 2R_16782562_SNP [dm6]	A	G	2.442e^-4	0.717	NON_SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7244414	2L_7244414_SNP [dm3] 2L_7244414_SNP [dm6]	G	A	2.444e^-4	0.717	INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	16004428	3L_16004428_SNP [dm3] 3L_16011328_SNP [dm6]	G	A	2.446e^-4	0.717	SYNONYMOUS_CODING mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	8602422	3L_8602422_SNP [dm3] 3L_8609322_SNP [dm6]	G	A	2.449e^-4	0.717	INTRON CG6282
2L	18729015	2L_18729015_SNP [dm3] 2L_18729015_SNP [dm6]	G	C	2.453e^-4	0.717	INTRON CG10348
2L	9415683	2L_9415683_SNP [dm3] 2L_9415683_SNP [dm6]	A	T	2.455e^-4	0.717	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11305672	2L_11305672_SNP [dm3] 2L_11305672_SNP [dm6]	C	G	2.459e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10503744	2L_10503744_SNP [dm3] 2L_10503744_SNP [dm6]	A	G	2.459e^-4	0.717	INTRON Myo31DF
X	11173198	X_11173198_SNP [dm3] X_11279165_SNP [dm6]	G	T	2.461e^-4	0.717	INTRON CG44422
3L	1728799	3L_1728799_SNP [dm3] 3L_1728799_SNP [dm6]	T	A	2.473e^-4	0.717	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
X	5617943	X_5617943_INS [dm3] X_5723910_INS [dm6]	A	AA	2.477e^-4	0.717	UPSTREAM CG32758 INTRON CG32758	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5267657	2L_5267657_SNP [dm3] 2L_5267657_SNP [dm6]	C	T	2.480e^-4	0.717	NON_SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
2R	13002476	2R_13002476_SNP [dm3] 2R_17114971_SNP [dm6]	C	A	2.481e^-4	0.717	DOWNSTREAM CG15611 INTERGENIC
2L	4361233	2L_4361233_SNP [dm3] 2L_4361233_SNP [dm6]	A	T	2.483e^-4	0.717	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5062990	X_5062990_SNP [dm3] X_5168957_SNP [dm6]	T	C	2.485e^-4	0.717	INTRON rg & 1 other
3R	17358546	3R_17358546_SNP [dm3] 3R_21532824_SNP [dm6]	A	G	2.489e^-4	0.717	INTRON CR43372
3L	8896348	3L_8896348_SNP [dm3] 3L_8903248_SNP [dm6]	A	C	2.493e^-4	0.717	UPSTREAM tRNA:T:Psi INTRON TrpA1
2L	6551647	2L_6551647_SNP [dm3] 2L_6551647_SNP [dm6]	T	G	2.501e^-4	0.717	UPSTREAM CR44776 INTERGENIC
2L	5900651	2L_5900651_SNP [dm3] 2L_5900651_SNP [dm6]	T	C	2.503e^-4	0.717	UPSTREAM CR44579 INTERGENIC
3R	15092897	3R_15092897_SNP [dm3] 3R_19267175_SNP [dm6]	G	A	2.508e^-4	0.717	INTERGENIC
X	15561682	X_15561682_SNP [dm3] X_15667649_SNP [dm6]	C	T	2.521e^-4	0.717	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	16004148	3L_16004148_SNP [dm3] 3L_16011048_SNP [dm6]	C	T	2.523e^-4	0.717	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	766229	2R_766229_SNP [dm3] 2R_4878724_SNP [dm6]	G	C	2.525e^-4	0.717	INTERGENIC
3L	10246965	3L_10246965_DEL [dm3] 3L_10253865_DEL [dm6]	GGT	A	2.526e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6428038	X_6428038_SNP [dm3] X_6534005_SNP [dm6]	C	T	2.529e^-4	0.717	UTR_5_PRIME dx UPSTREAM RpL7A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19157722	3R_19157722_SNP [dm3] 3R_23332000_SNP [dm6]	T	A	2.529e^-4	0.717	INTRON pnt
3L	11491146	3L_11491146_SNP [dm3] 3L_11498046_SNP [dm6]	C	A	2.539e^-4	0.717	UTR_3_PRIME chrb
3L	1908849	3L_1908849_SNP [dm3] 3L_1908849_SNP [dm6]	A	C	2.549e^-4	0.717	INTRON CG1887
3L	1703216	3L_1703216_SNP [dm3] 3L_1703216_SNP [dm6]	G	A	2.550e^-4	0.717	UPSTREAM CG13931 INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	13183605	3L_13183605_DEL [dm3] 3L_13190505_DEL [dm6]	AT	A	2.552e^-4	0.717	INTERGENIC
2R	7151478	2R_7151478_SNP [dm3] 2R_11263973_SNP [dm6]	T	A	2.552e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	4073315	2L_4073315_SNP [dm3] 2L_4073315_SNP [dm6]	T	A	2.554e^-4	0.717	DOWNSTREAM CR44984 INTRON ed
3L	11430112	3L_11430112_SNP [dm3] 3L_11437012_SNP [dm6]	A	G	2.571e^-4	0.717	DOWNSTREAM CR44548 INTERGENIC
2L	20137085	2L_20137085_SNP [dm3] 2L_20137085_SNP [dm6]	T	C	2.572e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12879610	3L_12879610_SNP [dm3] 3L_12886510_SNP [dm6]	A	G	2.584e^-4	0.717	NON_SYNONYMOUS_CODING CG14120
3R	19432879	3R_19432879_SNP [dm3] 3R_23607157_SNP [dm6]	G	A	2.584e^-4	0.717	DOWNSTREAM CG31145 INTRON CG31145
2R	10819815	2R_10819815_SNP [dm3] 2R_14932310_SNP [dm6]	A	G	2.584e^-4	0.717	SYNONYMOUS_CODING CG10253
3L	11429926	3L_11429926_SNP [dm3] 3L_11436826_SNP [dm6]	G	T	2.589e^-4	0.717	DOWNSTREAM CR44548 INTERGENIC
2R	11485023	2R_11485023_SNP [dm3] 2R_15597518_SNP [dm6]	C	A	2.592e^-4	0.717	INTERGENIC
2R	15213519	2R_15213519_SNP [dm3] 2R_19326014_SNP [dm6]	G	T	2.594e^-4	0.717	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	16013041	2R_16013041_SNP [dm3] 2R_20125536_SNP [dm6]	A	G	2.595e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_inv
X	2943265	X_2943265_SNP [dm3] X_3049232_SNP [dm6]	G	T	2.597e^-4	0.717	INTRON kirre
3R	25298226	3R_25298226_SNP [dm3] 3R_29472504_SNP [dm6]	T	A	2.613e^-4	0.717	INTRON Ptp99A
X	5902046	X_5902046_SNP [dm3] X_6008013_SNP [dm6]	C	T	2.615e^-4	0.717	DOWNSTREAM mab-21 INTERGENIC
X	16946993	X_16946993_SNP [dm3] X_17052960_SNP [dm6]	T	A	2.616e^-4	0.717	INTRON CG45002
3L	8838806	3L_8838806_SNP [dm3] 3L_8845706_SNP [dm6]	T	G	2.617e^-4	0.717	INTRON dally
3L	12198006	3L_12198006_SNP [dm3] 3L_12204906_SNP [dm6]	C	A	2.619e^-4	0.717	SYNONYMOUS_CODING CG5626 UPSTREAM Adk1
2L	5492583	2L_5492583_SNP [dm3] 2L_5492583_SNP [dm6]	A	C	2.622e^-4	0.717	INTERGENIC
2R	717837	2R_717837_SNP [dm3] 2R_4830332_SNP [dm6]	G	A	2.622e^-4	0.717	UTR_3_PRIME CG14464 DOWNSTREAM CG14464
X	7085959	X_7085959_SNP [dm3] X_7191926_SNP [dm6]	C	T	2.627e^-4	0.717	INTRON CG9650 & 1 other
3L	1705667	3L_1705667_SNP [dm3] 3L_1705667_SNP [dm6]	T	A	2.627e^-4	0.717	INTRON CG7991	TF binding site mE1_TFBS_HSA
X	12209154	X_12209154_SNP [dm3] X_12315121_SNP [dm6]	A	T	2.632e^-4	0.717	INTRON Ten-a
3L	12228757	3L_12228757_INS [dm3] 3L_12235657_INS [dm6]	G	GTTGCTG	2.639e^-4	0.717	INTRON app
X	20057229	X_20057229_SNP [dm3] X_20163196_SNP [dm6]	T	C	2.642e^-4	0.717	UPSTREAM Phf7 INTRON Phf7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	786740	2R_786740_SNP [dm3] 2R_4899235_SNP [dm6]	A	T	2.658e^-4	0.717	INTRON CG44102	transposable element FlyBase
3L	8507536	3L_8507536_SNP [dm3] 3L_8514436_SNP [dm6]	A	C	2.659e^-4	0.717	NON_SYNONYMOUS_CODING CG6683 INTRON CG6765	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8006666	X_8006666_SNP [dm3] X_8112633_SNP [dm6]	C	T	2.660e^-4	0.717	INTRON Gclc
3L	6996347	3L_6996347_SNP [dm3] 3L_7003247_SNP [dm6]	G	A	2.661e^-4	0.717	INTRON Mp
3L	7100312	3L_7100312_SNP [dm3] 3L_7107212_SNP [dm6]	C	G	2.667e^-4	0.717	INTRON form3
2R	715529	2R_715529_SNP [dm3] 2R_4828024_SNP [dm6]	G	T	2.668e^-4	0.717	INTERGENIC	transposable element FlyBase
X	16993808	X_16993808_INS [dm3] X_17099775_INS [dm6]	A	ATAA	2.679e^-4	0.717	INTRON CG4991
2R	19056435	2R_19056435_SNP [dm3] 2R_23168912_SNP [dm6]	G	C	2.684e^-4	0.717	INTRON CG34371	TF binding site mE1_TFBS_HSA
3R	23795569	3R_23795569_SNP [dm3] 3R_27969847_SNP [dm6]	C	T	2.686e^-4	0.717	INTRON betaTub97EF	TF binding site mE1_TFBS_cad
2R	9678281	2R_9678281_SNP [dm3] 2R_13790776_SNP [dm6]	C	A	2.688e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19382861	3R_19382861_SNP [dm3] 3R_23557139_SNP [dm6]	A	G	2.688e^-4	0.717	UPSTREAM beat-IV & 1 other INTERGENIC
2R	16988609	2R_16988609_SNP [dm3] 2R_21101104_SNP [dm6]	A	C	2.692e^-4	0.717	SYNONYMOUS_CODING CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	753967	X_753967_SNP [dm3] X_859934_SNP [dm6]	T	C	2.695e^-4	0.717	INTRON CG43867
X	18413327	X_18413327_SNP [dm3] X_18519294_SNP [dm6]	G	T	2.695e^-4	0.717	INTRON Bx & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14614898	X_14614898_SNP [dm3] X_14720865_SNP [dm6]	T	G	2.710e^-4	0.717	INTRON NetB
X	9117728	X_9117728_SNP [dm3] X_9223695_SNP [dm6]	A	T	2.712e^-4	0.717	UPSTREAM t INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17454987	2R_17454987_SNP [dm3] 2R_21567482_SNP [dm6]	G	A	2.712e^-4	0.717	INTRON CG10440
2R	12786317	2R_12786317_SNP [dm3] 2R_16898812_SNP [dm6]	A	G	2.715e^-4	0.717	SYNONYMOUS_CODING inaC
3R	17358552	3R_17358552_SNP [dm3] 3R_21532830_SNP [dm6]	T	C	2.717e^-4	0.717	INTRON CR43372
2R	3529348	2R_3529348_SNP [dm3] 2R_7641843_SNP [dm6]	A	G	2.721e^-4	0.717	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
X	9125001	X_9125001_SNP [dm3] X_9230968_SNP [dm6]	G	T	2.721e^-4	0.717	NON_SYNONYMOUS_CODING CG12121	TF binding site mE1_TFBS_sens
2R	16015144	2R_16015144_SNP [dm3] 2R_20127639_SNP [dm6]	C	T	2.722e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1673265	3L_1673265_SNP [dm3] 3L_1673265_SNP [dm6]	G	A	2.723e^-4	0.717	UPSTREAM CG13930 INTERGENIC
2L	12516588	2L_12516588_SNP [dm3] 2L_12516588_SNP [dm6]	A	G	2.724e^-4	0.717	SYNONYMOUS_CODING bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11375312	2L_11375312_SNP [dm3] 2L_11375312_SNP [dm6]	C	T	2.733e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
2L	11300955	2L_11300955_SNP [dm3] 2L_11300955_SNP [dm6]	G	A	2.733e^-4	0.717	INTERGENIC
X	21291754	X_21291754_SNP [dm3] X_21420727_SNP [dm6]	C	T	2.739e^-4	0.717	INTERGENIC
3R	24382496	3R_24382496_SNP [dm3] 3R_28556774_SNP [dm6]	C	G	2.740e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7619434	2L_7619434_SNP [dm3] 2L_7619434_SNP [dm6]	C	A	2.741e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9207075	2R_9207075_SNP [dm3] 2R_13319570_SNP [dm6]	A	T	2.742e^-4	0.717	INTERGENIC
3R	7125049	3R_7125049_SNP [dm3] 3R_11299327_SNP [dm6]	A	T	2.745e^-4	0.717	INTRON CR31386
2L	4224140	2L_4224140_SNP [dm3] 2L_4224140_SNP [dm6]	T	C	2.747e^-4	0.717	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	15229210	2R_15229210_SNP [dm3] 2R_19341705_SNP [dm6]	G	A	2.747e^-4	0.717	UPSTREAM CG9975 INTRON Rgk1
X	13964945	X_13964945_INS [dm3] X_14070912_INS [dm6]	A	AA	2.751e^-4	0.717	DOWNSTREAM tRNA:S474:12Eh INTERGENIC
2L	8945213	2L_8945213_SNP [dm3] 2L_8945213_SNP [dm6]	T	C	2.754e^-4	0.717	INTRON C1GalTA	TF binding site mE1_TFBS_cad
3R	19069627	3R_19069627_SNP [dm3] 3R_23243905_SNP [dm6]	C	T	2.756e^-4	0.717	INTRON CG4467	TF binding site mE1_TFBS_inv
2R	713813	2R_713813_SNP [dm3] 2R_4826308_SNP [dm6]	A	G	2.759e^-4	0.717	INTERGENIC	transposable element FlyBase
X	17276858	X_17276858_SNP [dm3] X_17382825_SNP [dm6]	C	G	2.770e^-4	0.717	INTERGENIC
2L	7631175	2L_7631175_SNP [dm3] 2L_7631175_SNP [dm6]	C	A	2.780e^-4	0.717	INTERGENIC
2L	9413208	2L_9413208_SNP [dm3] 2L_9413208_SNP [dm6]	C	T	2.783e^-4	0.717	INTRON Shawl
3L	4241834	3L_4241834_INS [dm3] 3L_4241834_INS [dm6]	A	AAGGGCAATTGAGATAAATT...	2.783e^-4	0.717	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20874709	2L_20874709_SNP [dm3] 2L_20874709_SNP [dm6]	T	C	2.785e^-4	0.717	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	6375402	3L_6375402_SNP [dm3] 3L_6382302_SNP [dm6]	C	T	2.788e^-4	0.717	INTERGENIC
X	2868404	X_2868404_SNP [dm3] X_2974371_SNP [dm6]	A	G	2.791e^-4	0.717	UPSTREAM rst INTRON kirre	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16175792	2R_16175792_SNP [dm3] 2R_20288287_SNP [dm6]	T	A	2.795e^-4	0.717	UTR_3_PRIME CG34199 DOWNSTREAM Cpr56F
3L	11430104	3L_11430104_SNP [dm3] 3L_11437004_SNP [dm6]	C	A	2.799e^-4	0.717	DOWNSTREAM CR44548 INTERGENIC
3R	26034782	3R_26034782_SNP [dm3] 3R_30209060_SNP [dm6]	G	A	2.799e^-4	0.717	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5671296	3L_5671296_SNP [dm3] 3L_5678196_SNP [dm6]	T	A	2.802e^-4	0.717	UPSTREAM sif INTRON sif
2L	11666187	2L_11666187_SNP [dm3] 2L_11666187_SNP [dm6]	G	T	2.803e^-4	0.717	DOWNSTREAM CR44481 INTERGENIC
X	16950246	X_16950246_SNP [dm3] X_17056213_SNP [dm6]	T	C	2.810e^-4	0.717	INTRON CG45002
3R	26021909	3R_26021909_SNP [dm3] 3R_30196187_SNP [dm6]	T	C	2.811e^-4	0.717	UTR_5_PRIME CG15531 DOWNSTREAM CG9743
3L	15474627	3L_15474627_SNP [dm3] 3L_15481527_SNP [dm6]	T	A	2.812e^-4	0.717	INTERGENIC
3L	2399649	3L_2399649_SNP [dm3] 3L_2399649_SNP [dm6]	C	T	2.814e^-4	0.717	UPSTREAM CG45186 INTRON CG45186
3L	11628398	3L_11628398_SNP [dm3] 3L_11635298_SNP [dm6]	C	A	2.825e^-4	0.717	INTRON CG32091
2L	9464452	2L_9464452_INS [dm3] 2L_9464452_INS [dm6]	G	GG	2.825e^-4	0.717	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4743427	2L_4743427_SNP [dm3] 2L_4743427_SNP [dm6]	C	T	2.826e^-4	0.717	INTRON CG15630
2R	17646341	2R_17646341_SNP [dm3] 2R_21758836_SNP [dm6]	C	T	2.826e^-4	0.717	DOWNSTREAM Grx-1 INTERGENIC
2L	9918542	2L_9918542_SNP [dm3] 2L_9918542_SNP [dm6]	A	T	2.838e^-4	0.717	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19998890	X_19998890_SNP [dm3] X_20104857_SNP [dm6]	G	T	2.842e^-4	0.717	INTERGENIC
3R	16145260	3R_16145260_SNP [dm3] 3R_20319538_SNP [dm6]	A	C	2.842e^-4	0.717	INTRON CG42668
2L	11322363	2L_11322363_SNP [dm3] 2L_11322363_SNP [dm6]	C	A	2.847e^-4	0.717	INTERGENIC
X	3019373	X_3019373_SNP [dm3] X_3125340_SNP [dm6]	G	A	2.849e^-4	0.717	INTRON kirre
X	20538152	X_20538152_SNP [dm3] X_20667125_SNP [dm6]	T	C	2.854e^-4	0.717	INTRON CG1835
2R	7429781	2R_7429781_SNP [dm3] 2R_11542276_SNP [dm6]	G	T	2.859e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17255971	3L_17255971_SNP [dm3] 3L_17262871_SNP [dm6]	T	C	2.862e^-4	0.717	INTRON CR43870
3R	17089495	3R_17089495_SNP [dm3] 3R_21263773_SNP [dm6]	A	G	2.866e^-4	0.717	DOWNSTREAM ETHR INTRON ETHR
2L	12829254	2L_12829254_SNP [dm3] 2L_12829254_SNP [dm6]	G	A	2.871e^-4	0.717	INTERGENIC
X	20052783	X_20052783_SNP [dm3] X_20158750_SNP [dm6]	G	A	2.871e^-4	0.717	INTRON Rab35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1049464	2L_1049464_SNP [dm3] 2L_1049464_SNP [dm6]	C	A	2.873e^-4	0.717	DOWNSTREAM S INTERGENIC
2L	7688695	2L_7688695_SNP [dm3] 2L_7688695_SNP [dm6]	G	C	2.875e^-4	0.717	NON_SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
3L	21599863	3L_21599863_SNP [dm3] 3L_21606763_SNP [dm6]	T	C	2.883e^-4	0.717	INTRON TfAP-2
2R	14756701	2R_14756701_SNP [dm3] 2R_18869196_SNP [dm6]	C	G	2.885e^-4	0.717	INTERGENIC
X	16292037	X_16292037_SNP [dm3] X_16398004_SNP [dm6]	G	T	2.889e^-4	0.717	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
X	21278097	X_21278097_SNP [dm3] X_21407070_SNP [dm6]	G	T	2.893e^-4	0.717	INTERGENIC
3L	12883661	3L_12883661_SNP [dm3] 3L_12890561_SNP [dm6]	T	C	2.899e^-4	0.717	NON_SYNONYMOUS_CODING CG43894 UPSTREAM CR45748 INTRON CG43894
3L	2366157	3L_2366157_SNP [dm3] 3L_2366157_SNP [dm6]	C	A	2.900e^-4	0.717	INTERGENIC
3L	12127171	3L_12127171_SNP [dm3] 3L_12134071_SNP [dm6]	G	A	2.903e^-4	0.717	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
X	20559946	X_20559946_SNP [dm3] X_20688919_SNP [dm6]	G	C	2.913e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4488779	2L_4488779_SNP [dm3] 2L_4488779_SNP [dm6]	C	A	2.917e^-4	0.717	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad
3L	9886390	3L_9886390_SNP [dm3] 3L_9893290_SNP [dm6]	C	T	2.930e^-4	0.717	UTR_3_PRIME CalpB & 2 others DOWNSTREAM CG14164 & 1 other
2L	2420375	2L_2420375_SNP [dm3] 2L_2420375_SNP [dm6]	A	T	2.931e^-4	0.717	UPSTREAM CG34447 & 1 other INTERGENIC
2R	758846	2R_758846_SNP [dm3] 2R_4871341_SNP [dm6]	C	A	2.934e^-4	0.717	INTERGENIC
2R	17723413	2R_17723413_SNP [dm3] 2R_21835908_SNP [dm6]	A	G	2.936e^-4	0.717	SYNONYMOUS_CODING CG4377 UPSTREAM CG4363
X	20725221	X_20725221_SNP [dm3] X_20854194_SNP [dm6]	A	T	2.939e^-4	0.717	INTRON shakB
2R	18759394	2R_18759394_SNP [dm3] 2R_22871871_SNP [dm6]	T	C	2.944e^-4	0.717	INTRON CG13532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16946914	X_16946914_DEL [dm3] X_17052881_DEL [dm6]	TTTTTTATCACATCTAT...	T	2.945e^-4	0.717	INTRON CG45002
2R	11056895	2R_11056895_SNP [dm3] 2R_15169390_SNP [dm6]	T	C	2.949e^-4	0.717	INTRON igl
X	8585831	X_8585831_SNP [dm3] X_8691798_SNP [dm6]	C	A	2.950e^-4	0.717	UTR_3_PRIME Ogg1 DOWNSTREAM CG11294
3L	10538023	3L_10538023_SNP [dm3] 3L_10544923_SNP [dm6]	A	C	2.952e^-4	0.717	INTRON A2bp1
X	6691938	X_6691938_SNP [dm3] X_6797905_SNP [dm6]	G	A	2.957e^-4	0.717	INTRON C3G
3L	5731897	3L_5731897_SNP [dm3] 3L_5738797_SNP [dm6]	C	A	2.970e^-4	0.717	SYNONYMOUS_CODING sif
2R	9416857	2R_9416857_SNP [dm3] 2R_13529352_SNP [dm6]	G	C	2.973e^-4	0.717	INTRON Vmat
3L	7169561	3L_7169561_INS [dm3] 3L_7176461_INS [dm6]	A	AC	2.982e^-4	0.717	INTRON Dscam2
X	17892750	X_17892750_SNP [dm3] X_17998717_SNP [dm6]	G	C	2.987e^-4	0.717	INTRON Sh
2L	3328443	2L_3328443_SNP [dm3] 2L_3328443_SNP [dm6]	T	A	2.987e^-4	0.717	SYNONYMOUS_CODING CG33282
X	5942888	X_5942888_SNP [dm3] X_6048855_SNP [dm6]	T	C	2.992e^-4	0.717	UTR_3_PRIME CG5937
2L	13264529	2L_13264529_SNP [dm3] 2L_13264529_SNP [dm6]	A	T	2.996e^-4	0.717	DOWNSTREAM CG31848 INTRON CG44085
2R	12563143	2R_12563143_SNP [dm3] 2R_16675638_SNP [dm6]	T	G	2.998e^-4	0.717	INTRON CG30463
3L	19578510	3L_19578510_SNP [dm3] 3L_19585410_SNP [dm6]	G	C	3.007e^-4	0.717	UTR_3_PRIME CG9231 UPSTREAM Shal & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9511809	2L_9511809_DEL [dm3] 2L_9511809_DEL [dm6]	CT	C	3.008e^-4	0.717	INTRON CG33298	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3007170	3L_3007170_SNP [dm3] 3L_3007170_SNP [dm6]	A	G	3.010e^-4	0.717	INTRON FMRFaR
2L	2754819	2L_2754819_SNP [dm3] 2L_2754819_SNP [dm6]	G	C	3.013e^-4	0.717	INTRON Bacc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	16145147	3R_16145147_SNP [dm3] 3R_20319425_SNP [dm6]	G	A	3.023e^-4	0.717	INTRON CG42668
2L	14354146	2L_14354146_SNP [dm3] 2L_14354146_SNP [dm6]	T	A	3.032e^-4	0.717	SYNONYMOUS_CODING l_2_34Fd UPSTREAM Rab14	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16947242	X_16947242_SNP [dm3] X_17053209_SNP [dm6]	A	G	3.032e^-4	0.717	INTRON CG45002
3L	11628384	3L_11628384_SNP [dm3] 3L_11635284_SNP [dm6]	C	T	3.035e^-4	0.717	INTRON CG32091
2R	16750644	2R_16750644_SNP [dm3] 2R_20863139_SNP [dm6]	C	A	3.036e^-4	0.717	UPSTREAM CG15227 INTERGENIC
3L	11003282	3L_11003282_SNP [dm3] 3L_11010182_SNP [dm6]	A	T	3.038e^-4	0.717	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	15966845	X_15966845_SNP [dm3] X_16072812_SNP [dm6]	T	C	3.043e^-4	0.717	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12565203	3L_12565203_SNP [dm3] 3L_12572103_SNP [dm6]	T	C	3.046e^-4	0.717	SYNONYMOUS_CODING sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	18452463	2R_18452463_SNP [dm3] 2R_22564958_SNP [dm6]	C	T	3.057e^-4	0.717	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13643869	2L_13643869_SNP [dm3] 2L_13643869_SNP [dm6]	A	C	3.058e^-4	0.717	DOWNSTREAM CR44726 INTERGENIC
X	21097524	X_21097524_SNP [dm3] X_21226497_SNP [dm6]	C	T	3.060e^-4	0.717	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097542	X_21097542_SNP [dm3] X_21226515_SNP [dm6]	T	G	3.060e^-4	0.717	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097552	X_21097552_SNP [dm3] X_21226525_SNP [dm6]	T	G	3.060e^-4	0.717	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12672546	2R_12672546_SNP [dm3] 2R_16785041_SNP [dm6]	A	G	3.063e^-4	0.717	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14620823	3R_14620823_SNP [dm3] 3R_18795101_SNP [dm6]	G	C	3.067e^-4	0.717	UTR_5_PRIME CG7720	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18645065	3L_18645065_SNP [dm3] 3L_18651965_SNP [dm6]	T	C	3.069e^-4	0.717	INTRON MYPT-75D
2L	1452686	2L_1452686_SNP [dm3] 2L_1452686_SNP [dm6]	G	A	3.073e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8258648	3L_8258648_SNP [dm3] 3L_8265548_SNP [dm6]	G	A	3.077e^-4	0.717	INTRON Dscam4
2R	16978030	2R_16978030_SNP [dm3] 2R_21090525_SNP [dm6]	A	G	3.077e^-4	0.717	SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15314848	3R_15314848_SNP [dm3] 3R_19489126_SNP [dm6]	A	G	3.079e^-4	0.717	DOWNSTREAM CG15025 INTRON Dys
2R	15248685	2R_15248685_SNP [dm3] 2R_19361180_SNP [dm6]	C	G	3.086e^-4	0.717	SYNONYMOUS_CODING CG11961
3L	18115607	3L_18115607_SNP [dm3] 3L_18122507_SNP [dm6]	A	T	3.086e^-4	0.717	UPSTREAM CG42853 INTERGENIC
X	15562107	X_15562107_SNP [dm3] X_15668074_SNP [dm6]	G	A	3.091e^-4	0.717	SYNONYMOUS_CODING CG15646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14753297	2R_14753297_SNP [dm3] 2R_18865792_SNP [dm6]	A	C	3.095e^-4	0.717	UTR_5_PRIME Dpt UPSTREAM CG43071	regulatory region REDfly_CRMs
X	16993819	X_16993819_SNP [dm3] X_17099786_SNP [dm6]	C	A	3.097e^-4	0.717	INTRON CG4991
3R	16456918	3R_16456918_SNP [dm3] 3R_20631196_SNP [dm6]	T	C	3.098e^-4	0.717	SYNONYMOUS_CODING Pi3K92E
2L	1516152	2L_1516152_SNP [dm3] 2L_1516152_SNP [dm6]	G	T	3.107e^-4	0.717	DOWNSTREAM CG18132 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18632198	2R_18632198_SNP [dm3] 2R_22744693_SNP [dm6]	C	T	3.108e^-4	0.717	SYNONYMOUS_CODING CG42260	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15762618	2R_15762618_SNP [dm3] 2R_19875113_SNP [dm6]	A	G	3.116e^-4	0.717	INTERGENIC
3R	17358551	3R_17358551_SNP [dm3] 3R_21532829_SNP [dm6]	A	C	3.123e^-4	0.717	INTRON CR43372
2L	5455367	2L_5455367_SNP [dm3] 2L_5455367_SNP [dm6]	A	C	3.128e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19505945	X_19505945_SNP [dm3] X_19611912_SNP [dm6]	C	T	3.128e^-4	0.717	SYNONYMOUS_CODING Tyler UTR_5_PRIME Shawn DOWNSTREAM CG14207	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16572904	2L_16572904_SNP [dm3] 2L_16572904_SNP [dm6]	C	T	3.134e^-4	0.717	INTRON CG42389
3R	16288966	3R_16288966_SNP [dm3] 3R_20463244_SNP [dm6]	G	T	3.151e^-4	0.717	INTRON Gfrl
2L	4284942	2L_4284942_DEL [dm3] 2L_4284942_DEL [dm6]	AA	A	3.152e^-4	0.717	UTR_5_PRIME tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4961021	2L_4961021_SNP [dm3] 2L_4961021_SNP [dm6]	G	A	3.160e^-4	0.717	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17453151	3L_17453151_SNP [dm3] 3L_17460051_SNP [dm6]	T	C	3.162e^-4	0.717	UPSTREAM CR44565 INTERGENIC
2L	7781627	2L_7781627_SNP [dm3] 2L_7781627_SNP [dm6]	G	A	3.171e^-4	0.717	UTR_5_PRIME CG7164 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad
2R	14756254	2R_14756254_SNP [dm3] 2R_18868749_SNP [dm6]	A	G	3.172e^-4	0.717	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2R	14753702	2R_14753702_SNP [dm3] 2R_18866197_SNP [dm6]	A	T	3.173e^-4	0.717	UTR_3_PRIME Dpt UPSTREAM CG43071
2R	14270070	2R_14270070_SNP [dm3] 2R_18382565_SNP [dm6]	T	G	3.187e^-4	0.717	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	18967371	2R_18967371_SNP [dm3] 2R_23079848_SNP [dm6]	A	G	3.187e^-4	0.717	UPSTREAM Art7 & 2 others INTERGENIC
3L	3843140	3L_3843140_DEL [dm3] 3L_3843140_DEL [dm6]	CT	C	3.190e^-4	0.717	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	722758	3L_722758_SNP [dm3] 3L_722758_SNP [dm6]	G	A	3.191e^-4	0.717	INTERGENIC
2L	7630737	2L_7630737_SNP [dm3] 2L_7630737_SNP [dm6]	T	G	3.198e^-4	0.717	INTERGENIC
3L	4839102	3L_4839102_SNP [dm3] 3L_4839102_SNP [dm6]	T	C	3.205e^-4	0.717	UTR_5_PRIME CG13707 INTRON CG13707
3R	17358559	3R_17358559_SNP [dm3] 3R_21532837_SNP [dm6]	T	G	3.213e^-4	0.717	INTRON CR43372
2R	20433363	2R_20433363_SNP [dm3] 2R_24545840_SNP [dm6]	A	G	3.214e^-4	0.717	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16353750	3L_16353750_INS [dm3] 3L_16360650_INS [dm6]	A	ACACCACAG	3.222e^-4	0.717	INTRON CG45057
2R	9636345	2R_9636345_SNP [dm3] 2R_13748840_SNP [dm6]	A	C	3.230e^-4	0.717	UTR_3_PRIME fas
2L	11322313	2L_11322313_SNP [dm3] 2L_11322313_SNP [dm6]	T	A	3.234e^-4	0.717	INTERGENIC
3L	9920164	3L_9920164_SNP [dm3] 3L_9927064_SNP [dm6]	T	G	3.235e^-4	0.717	UPSTREAM CG34356 INTRON CG34356
2L	5455445	2L_5455445_SNP [dm3] 2L_5455445_SNP [dm6]	G	T	3.243e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15587694	X_15587694_SNP [dm3] X_15693661_SNP [dm6]	C	T	3.246e^-4	0.717	UPSTREAM CR45526 EXON CR45524	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	780404	2R_780404_INS [dm3] 2R_4892899_INS [dm6]	T	CAATA	3.247e^-4	0.717	INTERGENIC	transposable element FlyBase
3L	7816949	3L_7816949_SNP [dm3] 3L_7823849_SNP [dm6]	C	T	3.250e^-4	0.717	INTRON Pdp1
3L	16353738	3L_16353738_SNP [dm3] 3L_16360638_SNP [dm6]	A	T	3.253e^-4	0.717	INTRON CG45057
3L	13918736	3L_13918736_SNP [dm3] 3L_13925636_SNP [dm6]	T	A	3.254e^-4	0.717	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20057121	X_20057121_SNP [dm3] X_20163088_SNP [dm6]	T	C	3.259e^-4	0.717	UPSTREAM Phf7 INTRON Phf7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	5495624	3L_5495624_SNP [dm3] 3L_5502524_SNP [dm6]	A	G	3.263e^-4	0.717	INTERGENIC
2L	18369604	2L_18369604_SNP [dm3] 2L_18369604_SNP [dm6]	G	A	3.273e^-4	0.717	INTRON Fas3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	9460872	2L_9460872_SNP [dm3] 2L_9460872_SNP [dm6]	C	A	3.276e^-4	0.717	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11314840	2L_11314840_SNP [dm3] 2L_11314840_SNP [dm6]	G	A	3.280e^-4	0.717	INTERGENIC
3L	9920108	3L_9920108_SNP [dm3] 3L_9927008_SNP [dm6]	A	T	3.285e^-4	0.717	UPSTREAM CG34356 INTRON CG34356
3R	19430642	3R_19430642_SNP [dm3] 3R_23604920_SNP [dm6]	A	G	3.286e^-4	0.717	SYNONYMOUS_CODING CG10184 DOWNSTREAM CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15936273	3L_15936273_SNP [dm3] 3L_15943173_SNP [dm6]	A	G	3.293e^-4	0.717	INTRON Pka-C3
3R	20405232	3R_20405232_SNP [dm3] 3R_24579510_SNP [dm6]	G	A	3.299e^-4	0.717	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14204336	3L_14204336_DEL [dm3] 3L_14211236_DEL [dm6]	AG	T	3.306e^-4	0.717	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	19320419	2L_19320419_SNP [dm3] 2L_19320419_SNP [dm6]	G	A	3.309e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13937000	3L_13937000_SNP [dm3] 3L_13943900_SNP [dm6]	C	A	3.323e^-4	0.717	INTRON CG32137
2L	7621802	2L_7621802_SNP [dm3] 2L_7621802_SNP [dm6]	C	T	3.337e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
2L	855240	2L_855240_SNP [dm3] 2L_855240_SNP [dm6]	G	T	3.338e^-4	0.717	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13611401	2L_13611401_SNP [dm3] 2L_13611401_SNP [dm6]	G	A	3.339e^-4	0.717	INTRON kuz
X	20375142	X_20375142_SNP [dm3] X_20504115_SNP [dm6]	G	T	3.345e^-4	0.717	INTRON RhoGAP19D
X	10742270	X_10742270_SNP [dm3] X_10848237_SNP [dm6]	G	A	3.345e^-4	0.717	NON_SYNONYMOUS_CODING CG17333 UPSTREAM CG2202	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16465879	X_16465879_SNP [dm3] X_16571846_SNP [dm6]	G	A	3.346e^-4	0.717	INTRON CanA-14F
X	15261356	X_15261356_SNP [dm3] X_15367323_SNP [dm6]	A	C	3.350e^-4	0.717	INTRON acj6
3L	6430836	3L_6430836_SNP [dm3] 3L_6437736_SNP [dm6]	C	T	3.356e^-4	0.717	INTRON CG42747
3R	5751469	3R_5751469_SNP [dm3] 3R_9925747_SNP [dm6]	C	A	3.359e^-4	0.717	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	10755458	3L_10755458_SNP [dm3] 3L_10762358_SNP [dm6]	C	A	3.359e^-4	0.717	INTERGENIC
2R	631018	2R_631018_SNP [dm3] 2R_4743513_SNP [dm6]	T	G	3.363e^-4	0.717	UPSTREAM conu INTERGENIC
2R	17646347	2R_17646347_SNP [dm3] 2R_21758842_SNP [dm6]	A	G	3.363e^-4	0.717	DOWNSTREAM Grx-1 INTERGENIC
2R	632632	2R_632632_SNP [dm3] 2R_4745127_SNP [dm6]	A	T	3.370e^-4	0.717	INTRON conu
3L	15936658	3L_15936658_SNP [dm3] 3L_15943558_SNP [dm6]	C	T	3.371e^-4	0.717	INTRON Pka-C3
X	8019397	X_8019397_MNP [dm3] X_8125364_MNP [dm6]	TTTA	GCGG	3.372e^-4	0.717	INTRON cyr	TF binding site BDTNP1_TFBS_dl
X	3912826	X_3912826_SNP [dm3] X_4018793_SNP [dm6]	A	C	3.374e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3R	19245509	3R_19245509_INS [dm3] 3R_23419787_INS [dm6]	A	ACAGCA	3.379e^-4	0.717	INTRON CG4374
2R	780268	2R_780268_SNP [dm3] 2R_4892763_SNP [dm6]	G	A	3.380e^-4	0.717	INTERGENIC	transposable element FlyBase
X	16607127	X_16607127_SNP [dm3] X_16713094_SNP [dm6]	G	A	3.381e^-4	0.717	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26966181	3R_26966181_SNP [dm3] 3R_31140459_SNP [dm6]	G	C	3.388e^-4	0.717	INTRON Gycbeta100B
2R	12679362	2R_12679362_SNP [dm3] 2R_16791857_SNP [dm6]	A	T	3.391e^-4	0.717	UTR_3_PRIME CG5522 UPSTREAM CG15919 DOWNSTREAM CG5522
2L	12331404	2L_12331404_SNP [dm3] 2L_12331404_SNP [dm6]	G	C	3.392e^-4	0.717	INTERGENIC
2R	14756238	2R_14756238_SNP [dm3] 2R_18868733_SNP [dm6]	C	T	3.393e^-4	0.717	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
3L	8847541	3L_8847541_SNP [dm3] 3L_8854441_SNP [dm6]	T	C	3.400e^-4	0.717	INTRON dally
2L	7688413	2L_7688413_SNP [dm3] 2L_7688413_SNP [dm6]	G	C	3.400e^-4	0.717	SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
2L	11158255	2L_11158255_SNP [dm3] 2L_11158255_SNP [dm6]	G	A	3.404e^-4	0.717	UTR_3_PRIME Ca-beta DOWNSTREAM Ca-beta
3R	16254079	3R_16254079_SNP [dm3] 3R_20428357_SNP [dm6]	A	C	3.405e^-4	0.717	INTRON Gfrl
3L	9714814	3L_9714814_SNP [dm3] 3L_9721714_SNP [dm6]	C	A	3.411e^-4	0.717	NON_SYNONYMOUS_CODING nbs UTR_3_PRIME nbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9918583	2L_9918583_SNP [dm3] 2L_9918583_SNP [dm6]	T	A	3.411e^-4	0.717	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17358565	3R_17358565_DEL [dm3] 3R_21532843_DEL [dm6]	TGATGGCTGTAGA...	T	3.418e^-4	0.717	INTRON CR43372
X	751139	X_751139_SNP [dm3] X_857106_SNP [dm6]	G	A	3.420e^-4	0.717	INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10686277	2L_10686277_SNP [dm3] 2L_10686277_SNP [dm6]	A	T	3.422e^-4	0.717	UTR_3_PRIME CG7296 DOWNSTREAM CG7296
2L	915209	2L_915209_SNP [dm3] 2L_915209_SNP [dm6]	C	T	3.422e^-4	0.717	SYNONYMOUS_CODING GluRIIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	9457217	2L_9457217_SNP [dm3] 2L_9457217_SNP [dm6]	A	C	3.427e^-4	0.717	INTRON numb	TF binding site mE1_TFBS_sens
X	19861909	X_19861909_SNP [dm3] X_19967876_SNP [dm6]	A	G	3.430e^-4	0.717	UTR_3_PRIME Nep3
2L	21844552	2L_21844552_SNP [dm3] 2L_21844552_SNP [dm6]	T	G	3.431e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20453451	X_20453451_SNP [dm3] X_20582424_SNP [dm6]	A	T	3.432e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7355630	3L_7355630_SNP [dm3] 3L_7362530_SNP [dm6]	A	G	3.434e^-4	0.717	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19254509	2R_19254509_SNP [dm3] 2R_23366986_SNP [dm6]	A	C	3.438e^-4	0.717	UTR_5_PRIME Ice1 UPSTREAM vir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7099827	3L_7099827_SNP [dm3] 3L_7106727_SNP [dm6]	A	G	3.440e^-4	0.717	INTRON form3
2L	9296724	2L_9296724_INS [dm3] 2L_9296724_INS [dm6]	A	AA	3.442e^-4	0.717	UTR_3_PRIME Ggamma30A
2R	818115	2R_818115_SNP [dm3] 2R_4930610_SNP [dm6]	T	G	3.445e^-4	0.717	INTRON Ir41a
2R	10308675	2R_10308675_SNP [dm3] 2R_14421170_SNP [dm6]	G	A	3.446e^-4	0.717	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	16335944	3L_16335944_SNP [dm3] 3L_16342844_SNP [dm6]	A	C	3.453e^-4	0.717	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
X	19864266	X_19864266_SNP [dm3] X_19970233_SNP [dm6]	C	G	3.460e^-4	0.717	DOWNSTREAM Nep3 INTERGENIC
2R	12670639	2R_12670639_SNP [dm3] 2R_16783134_SNP [dm6]	A	T	3.463e^-4	0.717	UTR_3_PRIME resilin UPSTREAM CG5522	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	975293	X_975293_SNP [dm3] X_1081260_SNP [dm6]	A	T	3.464e^-4	0.717	UTR_5_PRIME CG3655 INTRON CR44779 & 1 other
2R	14753686	2R_14753686_SNP [dm3] 2R_18866181_SNP [dm6]	G	T	3.471e^-4	0.717	UTR_3_PRIME Dpt UPSTREAM CG43071
X	7903376	X_7903376_SNP [dm3] X_8009343_SNP [dm6]	C	T	3.480e^-4	0.717	INTRON Tbh
X	20997971	X_20997971_SNP [dm3] X_21126944_SNP [dm6]	G	A	3.483e^-4	0.717	INTRON CG34120
2R	15213287	2R_15213287_SNP [dm3] 2R_19325782_SNP [dm6]	C	A	3.484e^-4	0.717	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13183599	3L_13183599_SNP [dm3] 3L_13190499_SNP [dm6]	G	A	3.485e^-4	0.717	INTERGENIC
2L	8131557	2L_8131557_SNP [dm3] 2L_8131557_SNP [dm6]	C	T	3.495e^-4	0.717	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
3L	9827806	3L_9827806_SNP [dm3] 3L_9834706_SNP [dm6]	T	A	3.499e^-4	0.717	UTR_3_PRIME I-2 DOWNSTREAM CG43897
2R	4788161	2R_4788161_SNP [dm3] 2R_8900656_SNP [dm6]	G	T	3.510e^-4	0.717	SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	6428326	X_6428326_DEL [dm3] X_6534293_DEL [dm6]	CGAGAGA	T	3.512e^-4	0.717	UTR_5_PRIME dx UPSTREAM RpL7A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26081361	3R_26081361_SNP [dm3] 3R_30255639_SNP [dm6]	G	T	3.514e^-4	0.717	INTERGENIC
2L	797849	2L_797849_SNP [dm3] 2L_797849_SNP [dm6]	T	C	3.519e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8605037	3L_8605037_INS [dm3] 3L_8611937_INS [dm6]	T	TTTT	3.519e^-4	0.717	INTRON CG6282
3R	26023960	3R_26023960_SNP [dm3] 3R_30198238_SNP [dm6]	T	G	3.524e^-4	0.717	INTRON CG9743
3L	8751862	3L_8751862_SNP [dm3] 3L_8758762_SNP [dm6]	A	G	3.525e^-4	0.717	INTRON Fhos
3L	5323691	3L_5323691_SNP [dm3] 3L_5330591_SNP [dm6]	C	T	3.545e^-4	0.717	INTERGENIC
3L	16742978	3L_16742978_SNP [dm3] 3L_16749878_SNP [dm6]	T	A	3.545e^-4	0.717	INTERGENIC
X	11340982	X_11340982_SNP [dm3] X_11446949_SNP [dm6]	C	T	3.546e^-4	0.717	DOWNSTREAM Sk1 INTRON Evi5	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
X	20027439	X_20027439_SNP [dm3] X_20133406_SNP [dm6]	G	A	3.548e^-4	0.717	UPSTREAM CG15322 INTERGENIC
3R	25758812	3R_25758812_SNP [dm3] 3R_29933090_SNP [dm6]	G	T	3.550e^-4	0.717	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14664874	2L_14664874_SNP [dm3] 2L_14664874_SNP [dm6]	A	T	3.554e^-4	0.717	INTRON osp
3L	16533655	3L_16533655_SNP [dm3] 3L_16540555_SNP [dm6]	C	T	3.555e^-4	0.717	INTRON CG43373
2R	787985	2R_787985_SNP [dm3] 2R_4900480_SNP [dm6]	G	A	3.557e^-4	0.717	INTRON CG44102	transposable element FlyBase
3L	9006556	3L_9006556_SNP [dm3] 3L_9013456_SNP [dm6]	T	C	3.567e^-4	0.717	NON_SYNONYMOUS_CODING Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20411243	X_20411243_SNP [dm3] X_20540216_SNP [dm6]	C	T	3.568e^-4	0.717	INTRON RunxB	TF binding site mE1_TFBS_inv
X	14421904	X_14421904_SNP [dm3] X_14527871_SNP [dm6]	T	G	3.570e^-4	0.717	INTERGENIC
X	8502844	X_8502844_SNP [dm3] X_8608811_SNP [dm6]	A	T	3.577e^-4	0.717	INTERGENIC
3R	18598182	3R_18598182_SNP [dm3] 3R_22772460_SNP [dm6]	C	A	3.579e^-4	0.717	UPSTREAM CG43095 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
X	20411217	X_20411217_SNP [dm3] X_20540190_SNP [dm6]	A	G	3.585e^-4	0.717	INTRON RunxB	TF binding site mE1_TFBS_inv
X	20289703	X_20289703_SNP [dm3] X_20418676_SNP [dm6]	G	A	3.596e^-4	0.717	SYNONYMOUS_CODING Obp19c UPSTREAM Obp19d DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11659328	3L_11659328_SNP [dm3] 3L_11666228_SNP [dm6]	T	C	3.597e^-4	0.717	INTRON CG32085
3L	10143059	3L_10143059_SNP [dm3] 3L_10149959_SNP [dm6]	C	G	3.601e^-4	0.717	INTRON dpr10
3L	11659145	3L_11659145_SNP [dm3] 3L_11666045_SNP [dm6]	G	A	3.606e^-4	0.717	INTRON CG32085
X	10833510	X_10833510_SNP [dm3] X_10939477_SNP [dm6]	T	A	3.608e^-4	0.717	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14928945	3L_14928945_SNP [dm3] 3L_14935845_SNP [dm6]	C	T	3.610e^-4	0.717	INTRON DCX-EMAP
3R	24617950	3R_24617950_SNP [dm3] 3R_28792228_SNP [dm6]	C	T	3.613e^-4	0.717	DOWNSTREAM intr INTERGENIC
2L	16615370	2L_16615370_SNP [dm3] 2L_16615370_SNP [dm6]	C	T	3.616e^-4	0.717	INTRON CG42389
3R	15104540	3R_15104540_SNP [dm3] 3R_19278818_SNP [dm6]	C	T	3.618e^-4	0.717	EXON CR44173
2L	20322205	2L_20322205_SNP [dm3] 2L_20322205_SNP [dm6]	A	T	3.622e^-4	0.717	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19295267	2R_19295267_SNP [dm3] 2R_23407744_SNP [dm6]	A	G	3.632e^-4	0.717	INTERGENIC
X	16993792	X_16993792_INS [dm3] X_17099759_INS [dm6]	A	AAA	3.642e^-4	0.717	INTRON CG4991
2R	12680486	2R_12680486_SNP [dm3] 2R_16792981_SNP [dm6]	G	A	3.643e^-4	0.717	SYNONYMOUS_CODING CG15919 DOWNSTREAM CG15615 & 1 other
3L	1704478	3L_1704478_SNP [dm3] 3L_1704478_SNP [dm6]	C	T	3.644e^-4	0.717	INTRON CG7991
X	15716188	X_15716188_SNP [dm3] X_15822155_SNP [dm6]	A	C	3.646e^-4	0.717	INTRON sd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5455378	2L_5455378_SNP [dm3] 2L_5455378_SNP [dm6]	A	G	3.649e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12671359	2R_12671359_SNP [dm3] 2R_16783854_SNP [dm6]	A	C	3.649e^-4	0.717	UTR_5_PRIME CG5522 DOWNSTREAM resilin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	11948671	2L_11948671_DEL [dm3] 2L_11948671_DEL [dm6]	CC	C	3.650e^-4	0.717	UTR_3_PRIME CG16964 DOWNSTREAM CG16964	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	631104	2R_631104_INS [dm3] 2R_4743599_INS [dm6]	T	TT	3.651e^-4	0.717	UPSTREAM conu INTERGENIC
2R	11170705	2R_11170705_SNP [dm3] 2R_15283200_SNP [dm6]	T	A	3.652e^-4	0.717	INTRON Trpm
X	8006680	X_8006680_DEL [dm3] X_8112647_DEL [dm6]	ATAC	T	3.653e^-4	0.717	INTRON Gclc
2L	7944750	2L_7944750_SNP [dm3] 2L_7944750_SNP [dm6]	A	G	3.661e^-4	0.717	INTRON Snoo
X	21327951	X_21327951_SNP [dm3] X_21456924_SNP [dm6]	T	A	3.661e^-4	0.717	INTRON CG42343
2L	11302483	2L_11302483_INS [dm3] 2L_11302483_INS [dm6]	T	CAACTTCAGCGGCGATCCTG...	3.664e^-4	0.717	INTERGENIC
3L	5494994	3L_5494994_SNP [dm3] 3L_5501894_SNP [dm6]	A	T	3.665e^-4	0.717	UPSTREAM CR44519 INTERGENIC
2R	3914347	2R_3914347_SNP [dm3] 2R_8026842_SNP [dm6]	T	A	3.675e^-4	0.717	DOWNSTREAM CR45267 INTERGENIC
3R	22380254	3R_22380254_SNP [dm3] 3R_26554532_SNP [dm6]	T	C	3.677e^-4	0.717	SYNONYMOUS_CODING scrib
2L	5622365	2L_5622365_SNP [dm3] 2L_5622365_SNP [dm6]	A	G	3.679e^-4	0.717	INTRON Cyp6a16
3L	5021644	3L_5021644_SNP [dm3] 3L_5021644_SNP [dm6]	T	G	3.680e^-4	0.717	INTRON Con
X	15564401	X_15564401_SNP [dm3] X_15670368_SNP [dm6]	A	T	3.680e^-4	0.717	UPSTREAM CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
3R	15429455	3R_15429455_SNP [dm3] 3R_19603733_SNP [dm6]	T	G	3.690e^-4	0.717	INTRON CG7342
X	6427905	X_6427905_SNP [dm3] X_6533872_SNP [dm6]	A	C	3.692e^-4	0.717	UPSTREAM dx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	16481710	X_16481710_SNP [dm3] X_16587677_SNP [dm6]	T	A	3.698e^-4	0.717	UPSTREAM CG13014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1330625	3L_1330625_SNP [dm3] 3L_1330625_SNP [dm6]	A	T	3.703e^-4	0.717	INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14614896	X_14614896_SNP [dm3] X_14720863_SNP [dm6]	C	T	3.704e^-4	0.717	INTRON NetB
2L	7700992	2L_7700992_SNP [dm3] 2L_7700992_SNP [dm6]	T	C	3.709e^-4	0.717	INTRON Tep2
2L	19922222	2L_19922222_SNP [dm3] 2L_19922222_SNP [dm6]	T	C	3.709e^-4	0.717	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	9891235	2L_9891235_SNP [dm3] 2L_9891235_SNP [dm6]	C	T	3.712e^-4	0.717	SYNONYMOUS_CODING CG4537 UPSTREAM CG34183 DOWNSTREAM mtDNA-helicase	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3843139	3L_3843139_SNP [dm3] 3L_3843139_SNP [dm6]	C	T	3.713e^-4	0.717	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	20057085	X_20057085_SNP [dm3] X_20163052_SNP [dm6]	A	T	3.714e^-4	0.717	UPSTREAM Phf7 INTRON Phf7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	5062992	X_5062992_SNP [dm3] X_5168959_SNP [dm6]	T	C	3.715e^-4	0.717	INTRON rg & 1 other
2L	385652	2L_385652_SNP [dm3] 2L_385652_SNP [dm6]	T	C	3.715e^-4	0.717	INTRON al
2L	5455370	2L_5455370_SNP [dm3] 2L_5455370_SNP [dm6]	A	T	3.721e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3504678	2R_3504678_SNP [dm3] 2R_7617173_SNP [dm6]	C	A	3.735e^-4	0.717	INTRON CG1358
3R	24257949	3R_24257949_SNP [dm3] 3R_28432227_SNP [dm6]	G	A	3.743e^-4	0.717	INTRON beat-VI
2L	10723682	2L_10723682_SNP [dm3] 2L_10723682_SNP [dm6]	T	A	3.743e^-4	0.717	UPSTREAM CG6431 INTERGENIC
3R	19008237	3R_19008237_SNP [dm3] 3R_23182515_SNP [dm6]	C	A	3.751e^-4	0.717	UPSTREAM Irk1 INTRON Irk1
X	3019371	X_3019371_SNP [dm3] X_3125338_SNP [dm6]	T	C	3.752e^-4	0.717	INTRON kirre
3R	19333111	3R_19333111_SNP [dm3] 3R_23507389_SNP [dm6]	A	C	3.763e^-4	0.717	NON_SYNONYMOUS_CODING CG34289 UTR_5_PRIME CG34289
3L	11659345	3L_11659345_SNP [dm3] 3L_11666245_SNP [dm6]	T	A	3.766e^-4	0.717	INTRON CG32085
3L	16358503	3L_16358503_SNP [dm3] 3L_16365403_SNP [dm6]	A	T	3.768e^-4	0.717	NON_SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
3L	16356331	3L_16356331_SNP [dm3] 3L_16363231_SNP [dm6]	T	A	3.770e^-4	0.717	NON_SYNONYMOUS_CODING Cpr72Ea	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	20371308	X_20371308_SNP [dm3] X_20500281_SNP [dm6]	A	G	3.783e^-4	0.717	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3L	15935913	3L_15935913_SNP [dm3] 3L_15942813_SNP [dm6]	C	T	3.791e^-4	0.717	INTRON Pka-C3
3L	15469660	3L_15469660_SNP [dm3] 3L_15476560_SNP [dm6]	T	A	3.796e^-4	0.717	INTERGENIC
3R	21573508	3R_21573508_SNP [dm3] 3R_25747786_SNP [dm6]	C	T	3.796e^-4	0.717	INTRON LpR1
3R	13893701	3R_13893701_SNP [dm3] 3R_18067979_SNP [dm6]	T	A	3.801e^-4	0.717	INTERGENIC
3R	15426599	3R_15426599_SNP [dm3] 3R_19600877_SNP [dm6]	G	A	3.811e^-4	0.717	SPLICE_SITE_REGION CG7333 INTRON CG7333
3L	8315023	3L_8315023_SNP [dm3] 3L_8321923_SNP [dm6]	G	A	3.820e^-4	0.717	NON_SYNONYMOUS_CODING CG13670
2R	781846	2R_781846_SNP [dm3] 2R_4894341_SNP [dm6]	A	G	3.826e^-4	0.717	INTERGENIC	transposable element FlyBase
X	13262358	X_13262358_SNP [dm3] X_13368325_SNP [dm6]	C	A	3.830e^-4	0.717	DOWNSTREAM Syt12 INTRON dmrt11E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13611429	2L_13611429_SNP [dm3] 2L_13611429_SNP [dm6]	G	A	3.833e^-4	0.717	INTRON kuz
3L	11552159	3L_11552159_SNP [dm3] 3L_11559059_SNP [dm6]	C	A	3.835e^-4	0.717	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
2R	16266815	2R_16266815_SNP [dm3] 2R_20379310_SNP [dm6]	C	A	3.835e^-4	0.717	INTERGENIC
2R	12316631	2R_12316631_SNP [dm3] 2R_16429126_SNP [dm6]	A	T	3.839e^-4	0.717	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2R	19510324	2R_19510324_SNP [dm3] 2R_23622801_SNP [dm6]	A	G	3.844e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1404248	3L_1404248_SNP [dm3] 3L_1404248_SNP [dm6]	G	A	3.847e^-4	0.717	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11659331	3L_11659331_SNP [dm3] 3L_11666231_SNP [dm6]	A	T	3.847e^-4	0.717	INTRON CG32085
2R	12681619	2R_12681619_SNP [dm3] 2R_16794114_SNP [dm6]	G	A	3.848e^-4	0.717	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
2R	13595996	2R_13595996_SNP [dm3] 2R_17708491_SNP [dm6]	C	T	3.863e^-4	0.717	INTRON CG6424
3L	16358468	3L_16358468_SNP [dm3] 3L_16365368_SNP [dm6]	A	G	3.868e^-4	0.717	SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
2L	14056335	2L_14056335_SNP [dm3] 2L_14056335_SNP [dm6]	C	T	3.869e^-4	0.717	INTRON nAChRalpha5
2R	8722219	2R_8722219_SNP [dm3] 2R_12834714_SNP [dm6]	C	A	3.873e^-4	0.717	INTERGENIC
3R	27080532	3R_27080532_SNP [dm3] 3R_31254810_SNP [dm6]	C	T	3.873e^-4	0.717	SYNONYMOUS_CODING CG1750 UPSTREAM spn-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20874828	2L_20874828_SNP [dm3] 2L_20874828_SNP [dm6]	C	T	3.874e^-4	0.717	INTRON sky & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	21386812	3R_21386812_SNP [dm3] 3R_25561090_SNP [dm6]	A	G	3.878e^-4	0.717	INTRON msi
2R	18892127	2R_18892127_SNP [dm3] 2R_23004604_SNP [dm6]	C	T	3.889e^-4	0.717	INTRON twi
2L	7630710	2L_7630710_SNP [dm3] 2L_7630710_SNP [dm6]	C	T	3.897e^-4	0.717	INTERGENIC
2L	7630712	2L_7630712_SNP [dm3] 2L_7630712_SNP [dm6]	T	G	3.897e^-4	0.717	INTERGENIC
X	7903357	X_7903357_SNP [dm3] X_8009324_SNP [dm6]	C	A	3.897e^-4	0.717	INTRON Tbh
X	20309354	X_20309354_SNP [dm3] X_20438327_SNP [dm6]	G	C	3.899e^-4	0.717	INTRON CG1695
X	20400431	X_20400431_SNP [dm3] X_20529404_SNP [dm6]	G	A	3.922e^-4	0.717	INTERGENIC
X	10988452	X_10988452_SNP [dm3] X_11094419_SNP [dm6]	C	G	3.922e^-4	0.717	UTR_3_PRIME CG2061 EXON CR45604	TF binding site mE1_TFBS_HSA
2L	17214377	2L_17214377_SNP [dm3] 2L_17214377_SNP [dm6]	C	T	3.924e^-4	0.717	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13865097	X_13865097_SNP [dm3] X_13971064_SNP [dm6]	A	G	3.932e^-4	0.717	INTRON mamo
X	20013184	X_20013184_SNP [dm3] X_20119151_SNP [dm6]	C	T	3.932e^-4	0.717	INTERGENIC
X	7883744	X_7883744_SNP [dm3] X_7989711_SNP [dm6]	A	G	3.933e^-4	0.717	INTERGENIC
2L	4924018	2L_4924018_SNP [dm3] 2L_4924018_SNP [dm6]	T	C	3.940e^-4	0.717	INTRON hoe1
3L	11659336	3L_11659336_SNP [dm3] 3L_11666236_SNP [dm6]	C	G	3.943e^-4	0.717	INTRON CG32085
3L	3207810	3L_3207810_SNP [dm3] 3L_3207810_SNP [dm6]	T	C	3.947e^-4	0.717	NON_SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 INTRON gry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8059293	2L_8059293_SNP [dm3] 2L_8059293_SNP [dm6]	G	T	3.947e^-4	0.717	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22813708	3R_22813708_SNP [dm3] 3R_26987986_SNP [dm6]	T	C	3.951e^-4	0.717	UPSTREAM CG31075 INTRON CG31075
3L	1909641	3L_1909641_SNP [dm3] 3L_1909641_SNP [dm6]	A	T	3.953e^-4	0.717	INTRON CG1887
2R	16175855	2R_16175855_SNP [dm3] 2R_20288350_SNP [dm6]	A	G	3.953e^-4	0.717	DOWNSTREAM Cpr56F & 1 other INTERGENIC
3L	3253790	3L_3253790_SNP [dm3] 3L_3253790_SNP [dm6]	C	T	3.954e^-4	0.717	EXON CR43626
X	19852773	X_19852773_SNP [dm3] X_19958740_SNP [dm6]	G	T	3.959e^-4	0.717	SYNONYMOUS_CODING CG12655 UPSTREAM CG43784
X	7085999	X_7085999_SNP [dm3] X_7191966_SNP [dm6]	G	A	3.961e^-4	0.717	INTRON CG9650 & 1 other
3L	16837577	3L_16837577_SNP [dm3] 3L_16844477_SNP [dm6]	C	A	3.966e^-4	0.717	UTR_3_PRIME TSG101 UPSTREAM CG9715 DOWNSTREAM CG9669	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	7817810	3L_7817810_SNP [dm3] 3L_7824710_SNP [dm6]	A	G	3.968e^-4	0.717	INTRON Pdp1
X	16765268	X_16765268_SNP [dm3] X_16871235_SNP [dm6]	A	G	3.971e^-4	0.717	INTRON CG13003
X	2429304	X_2429304_SNP [dm3] X_2535271_SNP [dm6]	A	T	3.980e^-4	0.717	INTRON trol	TF binding site BDTNP1_TFBS_dl
X	8634627	X_8634627_SNP [dm3] X_8740594_SNP [dm6]	C	T	3.983e^-4	0.717	INTERGENIC
2R	19050862	2R_19050862_SNP [dm3] 2R_23163339_SNP [dm6]	G	T	3.983e^-4	0.717	UTR_3_PRIME CG34371
2R	16176053	2R_16176053_SNP [dm3] 2R_20288548_SNP [dm6]	A	T	3.987e^-4	0.717	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199
3R	19431888	3R_19431888_SNP [dm3] 3R_23606166_SNP [dm6]	T	G	3.990e^-4	0.717	UTR_3_PRIME CG31145 UPSTREAM CG10184 DOWNSTREAM CG31145
3L	12879623	3L_12879623_SNP [dm3] 3L_12886523_SNP [dm6]	T	C	3.992e^-4	0.717	NON_SYNONYMOUS_CODING CG14120
2L	6551590	2L_6551590_SNP [dm3] 2L_6551590_SNP [dm6]	T	C	3.993e^-4	0.717	UPSTREAM CR44776 INTERGENIC
3L	17453004	3L_17453004_SNP [dm3] 3L_17459904_SNP [dm6]	C	A	3.996e^-4	0.717	UPSTREAM CR44565 INTERGENIC
3L	17453493	3L_17453493_SNP [dm3] 3L_17460393_SNP [dm6]	T	A	3.996e^-4	0.717	INTRON CR44565
3L	17453706	3L_17453706_SNP [dm3] 3L_17460606_SNP [dm6]	A	T	3.996e^-4	0.717	DOWNSTREAM CR44565 INTERGENIC
2L	10714489	2L_10714489_SNP [dm3] 2L_10714489_SNP [dm6]	C	G	3.996e^-4	0.717	INTERGENIC
3L	11659348	3L_11659348_MNP [dm3] 3L_11666248_MNP [dm6]	TCT	ATG	4.002e^-4	0.717	INTRON CG32085
2L	11914473	2L_11914473_SNP [dm3] 2L_11914473_SNP [dm6]	A	C	4.004e^-4	0.717	INTRON Pde1c
3L	1354755	3L_1354755_SNP [dm3] 3L_1354755_SNP [dm6]	T	C	4.007e^-4	0.717	INTRON Ptp61F
X	18640297	X_18640297_SNP [dm3] X_18746264_SNP [dm6]	T	C	4.008e^-4	0.717	DOWNSTREAM CG12609 INTERGENIC
2L	7088875	2L_7088875_SNP [dm3] 2L_7088875_SNP [dm6]	A	T	4.009e^-4	0.717	INTERGENIC
2R	11170706	2R_11170706_SNP [dm3] 2R_15283201_SNP [dm6]	A	T	4.011e^-4	0.717	INTRON Trpm
3L	11003277	3L_11003277_SNP [dm3] 3L_11010177_SNP [dm6]	G	T	4.015e^-4	0.717	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19244250	3R_19244250_SNP [dm3] 3R_23418528_SNP [dm6]	T	A	4.021e^-4	0.717	INTRON CG4374
2R	13562172	2R_13562172_SNP [dm3] 2R_17674667_SNP [dm6]	C	A	4.022e^-4	0.717	SYNONYMOUS_CODING Sema-1b
2R	4194723	2R_4194723_SNP [dm3] 2R_8307218_SNP [dm6]	G	A	4.029e^-4	0.717	INTERGENIC
2L	10344275	2L_10344275_SNP [dm3] 2L_10344275_SNP [dm6]	T	C	4.031e^-4	0.717	UPSTREAM CG5022 DOWNSTREAM Sps2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6100662	X_6100662_SNP [dm3] X_6206629_SNP [dm6]	G	T	4.032e^-4	0.717	INTERGENIC
2L	3813075	2L_3813075_SNP [dm3] 2L_3813075_SNP [dm6]	C	T	4.037e^-4	0.717	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8006667	X_8006667_DEL [dm3] X_8112634_DEL [dm6]	CACAAG	C	4.038e^-4	0.717	INTRON Gclc
2L	12604967	2L_12604967_SNP [dm3] 2L_12604967_SNP [dm6]	T	C	4.039e^-4	0.717	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10137533	3L_10137533_SNP [dm3] 3L_10144433_SNP [dm6]	A	G	4.043e^-4	0.717	INTERGENIC
2R	7936877	2R_7936877_DEL [dm3] 2R_12049372_DEL [dm6]	GCTTCATAG	G	4.045e^-4	0.717	UTR_3_PRIME Drep-1
2L	10755863	2L_10755863_SNP [dm3] 2L_10755863_SNP [dm6]	T	G	4.053e^-4	0.717	INTRON CG17124	TF binding site BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

BacterialLoad_PR_ADJ phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results