DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.031e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.06143
In_2L_t	0.02847
In_3R_Mo	0.04763

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.6182	0.0603
In_3R_Mo	6.5813	0.0372

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2337 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17685083	2R_17685083_DEL [dm3] 2R_21797578_DEL [dm6]	GTC	G	5.564e^-7	0.789	DOWNSTREAM CG34204 & 1 other INTERGENIC
3L	1909764	3L_1909764_SNP [dm3] 3L_1909764_SNP [dm6]	T	C	1.144e^-6	0.789	INTRON CG1887
X	9733635	X_9733635_SNP [dm3] X_9839602_SNP [dm6]	T	G	1.540e^-6	0.789	INTRON CG32698
2R	16176361	2R_16176361_SNP [dm3] 2R_20288856_SNP [dm6]	T	C	4.332e^-6	0.789	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo
2L	19129166	2L_19129166_INS [dm3] 2L_19129166_INS [dm6]	T	TGATTT	5.476e^-6	0.789	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
2L	19101233	2L_19101233_INS [dm3] 2L_19101233_INS [dm6]	A	AA	6.446e^-6	0.789	UPSTREAM CG17344 & 1 other INTRON Lim3
2R	16177451	2R_16177451_SNP [dm3] 2R_20289946_SNP [dm6]	A	C	6.603e^-6	0.789	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
3L	10755458	3L_10755458_SNP [dm3] 3L_10762358_SNP [dm6]	C	A	8.406e^-6	0.789	INTERGENIC
2R	786462	2R_786462_SNP [dm3] 2R_4898957_SNP [dm6]	A	C	9.364e^-6	0.789	INTRON CG44102	transposable element FlyBase
2R	16177429	2R_16177429_SNP [dm3] 2R_20289924_SNP [dm6]	T	C	1.025e^-5	0.789	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
2R	12680355	2R_12680355_SNP [dm3] 2R_16792850_SNP [dm6]	T	A	1.077e^-5	0.789	DOWNSTREAM CG15615 & 1 other INTRON CG15919
2R	15213498	2R_15213498_SNP [dm3] 2R_19325993_SNP [dm6]	C	G	1.086e^-5	0.789	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	670107	2R_670107_SNP [dm3] 2R_4782602_SNP [dm6]	C	A	1.198e^-5	0.789	INTRON CR43281
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	1.210e^-5	0.789	INTRON CG13917
3L	5374564	3L_5374564_SNP [dm3] 3L_5381464_SNP [dm6]	C	G	1.269e^-5	0.789	INTRON Ir64a
3L	12523392	3L_12523392_SNP [dm3] 3L_12530292_SNP [dm6]	A	C	1.275e^-5	0.789	UPSTREAM nst DOWNSTREAM Tsf2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20405065	3R_20405065_SNP [dm3] 3R_24579343_SNP [dm6]	G	A	1.303e^-5	0.789	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15175615	2L_15175615_SNP [dm3] 2L_15175615_SNP [dm6]	A	C	1.346e^-5	0.789	INTRON CG4168
3R	24418101	3R_24418101_SNP [dm3] 3R_28592379_SNP [dm6]	G	A	1.347e^-5	0.789	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
3L	10032780	3L_10032780_SNP [dm3] 3L_10039680_SNP [dm6]	C	A	1.355e^-5	0.789	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
X	9803438	X_9803438_SNP [dm3] X_9909405_SNP [dm6]	G	A	1.471e^-5	0.789	UTR_3_PRIME CG1986
3L	12391055	3L_12391055_SNP [dm3] 3L_12397955_SNP [dm6]	A	T	1.678e^-5	0.789	DOWNSTREAM Obp69a INTRON CG32104	TF binding site mE1_TFBS_HSA
X	16700589	X_16700589_SNP [dm3] X_16806556_SNP [dm6]	A	G	1.691e^-5	0.789	DOWNSTREAM CG13005 INTRON ppk28 & 1 other
2R	12680354	2R_12680354_SNP [dm3] 2R_16792849_SNP [dm6]	C	T	1.743e^-5	0.789	DOWNSTREAM CG15615 & 1 other INTRON CG15919
X	9803377	X_9803377_SNP [dm3] X_9909344_SNP [dm6]	T	A	1.746e^-5	0.789	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3L	12883585	3L_12883585_SNP [dm3] 3L_12890485_SNP [dm6]	T	A	1.783e^-5	0.789	UPSTREAM CR45748 INTRON CG43894
2L	4078242	2L_4078242_SNP [dm3] 2L_4078242_SNP [dm6]	T	G	1.864e^-5	0.789	INTRON ed
X	8578764	X_8578764_INS [dm3] X_8684731_INS [dm6]	T	TC	1.910e^-5	0.789	UPSTREAM CG11284 INTRON CG11284
X	9118394	X_9118394_SNP [dm3] X_9224361_SNP [dm6]	A	G	2.084e^-5	0.789	INTERGENIC
3L	5212528	3L_5212528_SNP [dm3] 3L_5219428_SNP [dm6]	C	T	2.162e^-5	0.789	INTRON shep
2R	785933	2R_785933_SNP [dm3] 2R_4898428_SNP [dm6]	G	A	2.271e^-5	0.789	INTRON CG44102	TF binding site mE1_TFBS_HSA mE1_TFBS_sens transposable element FlyBase
2L	8321657	2L_8321657_SNP [dm3] 2L_8321657_SNP [dm6]	A	T	2.309e^-5	0.789	UTR_3_PRIME CG7781 DOWNSTREAM CG7787
2L	9981354	2L_9981354_INS [dm3] 2L_9981354_INS [dm6]	G	CGGTT	2.329e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	12883596	3L_12883596_SNP [dm3] 3L_12890496_SNP [dm6]	C	T	2.345e^-5	0.789	UPSTREAM CR45748 INTRON CG43894
3L	12883597	3L_12883597_SNP [dm3] 3L_12890497_SNP [dm6]	G	A	2.345e^-5	0.789	UPSTREAM CR45748 INTRON CG43894
3L	8605037	3L_8605037_INS [dm3] 3L_8611937_INS [dm6]	T	TTTT	2.492e^-5	0.789	INTRON CG6282
2R	17475405	2R_17475405_DEL [dm3] 2R_21587900_DEL [dm6]	GG	A	2.508e^-5	0.789	INTERGENIC
3L	1673072	3L_1673072_SNP [dm3] 3L_1673072_SNP [dm6]	G	C	2.558e^-5	0.789	UPSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_cad
X	6100552	X_6100552_SNP [dm3] X_6206519_SNP [dm6]	T	C	2.566e^-5	0.789	INTERGENIC
2R	668322	2R_668322_SNP [dm3] 2R_4780817_SNP [dm6]	G	A	2.668e^-5	0.789	EXON CR43281
3L	1715681	3L_1715681_MNP [dm3] 3L_1715681_MNP [dm6]	GTTA	TAAC	2.669e^-5	0.789	UTR_3_PRIME drpr DOWNSTREAM drpr & 1 other
3L	1715686	3L_1715686_INS [dm3] 3L_1715686_INS [dm6]	A	AT	2.669e^-5	0.789	UTR_3_PRIME drpr DOWNSTREAM drpr & 1 other
3R	22993931	3R_22993931_SNP [dm3] 3R_27168209_SNP [dm6]	C	A	2.674e^-5	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	12151606	2L_12151606_SNP [dm3] 2L_12151606_SNP [dm6]	G	A	2.727e^-5	0.789	INTRON CG31760
X	6100641	X_6100641_SNP [dm3] X_6206608_SNP [dm6]	T	A	2.753e^-5	0.789	INTERGENIC
X	6810284	X_6810284_INS [dm3] X_6916251_INS [dm6]	T	TAT	2.762e^-5	0.789	INTRON CG14431
X	6810287	X_6810287_SNP [dm3] X_6916254_SNP [dm6]	A	G	2.762e^-5	0.789	INTRON CG14431
2R	17475403	2R_17475403_SNP [dm3] 2R_21587898_SNP [dm6]	G	A	2.854e^-5	0.789	INTERGENIC
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	2.897e^-5	0.789	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	14969810	3R_14969810_SNP [dm3] 3R_19144088_SNP [dm6]	G	C	3.135e^-5	0.789	INTRON Ppcs
2R	14752050	2R_14752050_SNP [dm3] 2R_18864545_SNP [dm6]	T	A	3.236e^-5	0.789	UTR_3_PRIME CG43070 DOWNSTREAM CG43071
2R	6308590	2R_6308590_SNP [dm3] 2R_10421085_SNP [dm6]	C	G	3.310e^-5	0.789	UPSTREAM CG33474 & 1 other INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	20405199	3R_20405199_SNP [dm3] 3R_24579477_SNP [dm6]	C	A	3.315e^-5	0.789	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9803183	X_9803183_SNP [dm3] X_9909150_SNP [dm6]	A	G	3.382e^-5	0.789	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
2L	11302671	2L_11302671_SNP [dm3] 2L_11302671_SNP [dm6]	G	A	3.470e^-5	0.789	INTERGENIC
3L	13434402	3L_13434402_SNP [dm3] 3L_13441302_SNP [dm6]	T	C	3.525e^-5	0.789	UPSTREAM CG10140 INTRON CG14109
3L	11628460	3L_11628460_SNP [dm3] 3L_11635360_SNP [dm6]	T	A	3.555e^-5	0.789	INTRON CG32091
2R	14754449	2R_14754449_SNP [dm3] 2R_18866944_SNP [dm6]	G	T	3.612e^-5	0.789	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	16177498	2R_16177498_SNP [dm3] 2R_20289993_SNP [dm6]	C	G	3.683e^-5	0.789	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
2L	11302153	2L_11302153_SNP [dm3] 2L_11302153_SNP [dm6]	T	A	3.749e^-5	0.789	INTERGENIC
3R	11018344	3R_11018344_SNP [dm3] 3R_15192622_SNP [dm6]	T	G	3.855e^-5	0.789	SYNONYMOUS_CODING CG6752 UPSTREAM mir-3644
3L	3207810	3L_3207810_SNP [dm3] 3L_3207810_SNP [dm6]	T	C	3.987e^-5	0.789	NON_SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 INTRON gry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16395828	2L_16395828_SNP [dm3] 2L_16395828_SNP [dm6]	G	A	3.993e^-5	0.789	INTERGENIC
2R	7494186	2R_7494186_SNP [dm3] 2R_11606681_SNP [dm6]	C	A	3.999e^-5	0.789	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9774047	2L_9774047_SNP [dm3] 2L_9774047_SNP [dm6]	G	A	4.002e^-5	0.789	SYNONYMOUS_CODING ppk11
2L	4185886	2L_4185886_SNP [dm3] 2L_4185886_SNP [dm6]	T	C	4.121e^-5	0.789	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
2R	14641561	2R_14641561_INS [dm3] 2R_18754056_INS [dm6]	A	ATA	4.130e^-5	0.789	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
3R	22813578	3R_22813578_SNP [dm3] 3R_26987856_SNP [dm6]	A	C	4.154e^-5	0.789	UPSTREAM CG31075 INTRON CG31075
2L	9773943	2L_9773943_SNP [dm3] 2L_9773943_SNP [dm6]	A	G	4.161e^-5	0.789	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2R	17397098	2R_17397098_SNP [dm3] 2R_21509593_SNP [dm6]	G	T	4.236e^-5	0.789	INTRON MESK2
2R	14091188	2R_14091188_SNP [dm3] 2R_18203683_SNP [dm6]	T	A	4.302e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6571470	3L_6571470_SNP [dm3] 3L_6578370_SNP [dm6]	G	T	4.308e^-5	0.789	INTRON CG18769 & 1 other
X	8501008	X_8501008_DEL [dm3] X_8606975_DEL [dm6]	TCTTCCCAAGTTT...	T	4.308e^-5	0.789	UPSTREAM Caf1-180 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	7715589	2L_7715589_SNP [dm3] 2L_7715589_SNP [dm6]	A	T	4.322e^-5	0.789	NON_SYNONYMOUS_CODING CG33296
X	9803405	X_9803405_SNP [dm3] X_9909372_SNP [dm6]	C	T	4.326e^-5	0.789	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
2R	10819815	2R_10819815_SNP [dm3] 2R_14932310_SNP [dm6]	A	G	4.417e^-5	0.789	SYNONYMOUS_CODING CG10253
2R	766632	2R_766632_SNP [dm3] 2R_4879127_SNP [dm6]	G	T	4.425e^-5	0.789	INTERGENIC
2R	784188	2R_784188_SNP [dm3] 2R_4896683_SNP [dm6]	A	C	4.446e^-5	0.789	INTRON CG44102	transposable element FlyBase
3L	19285729	3L_19285729_SNP [dm3] 3L_19292629_SNP [dm6]	G	A	4.448e^-5	0.789	UTR_5_PRIME Gbs-76A UPSTREAM Gbs-76A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	1909694	3L_1909694_SNP [dm3] 3L_1909694_SNP [dm6]	G	T	4.455e^-5	0.789	INTRON CG1887
X	5071240	X_5071240_SNP [dm3] X_5177207_SNP [dm6]	T	C	4.464e^-5	0.789	INTRON rg & 1 other
2L	14664874	2L_14664874_SNP [dm3] 2L_14664874_SNP [dm6]	A	T	4.475e^-5	0.789	INTRON osp
X	20784905	X_20784905_SNP [dm3] X_20913878_SNP [dm6]	T	C	4.514e^-5	0.789	INTRON shakB
2R	14753586	2R_14753586_SNP [dm3] 2R_18866081_SNP [dm6]	G	A	4.535e^-5	0.789	SYNONYMOUS_CODING Dpt UPSTREAM CG43071
2R	678603	2R_678603_SNP [dm3] 2R_4791098_SNP [dm6]	G	C	4.617e^-5	0.789	INTERGENIC	transposable element FlyBase
3L	9919556	3L_9919556_SNP [dm3] 3L_9926456_SNP [dm6]	T	C	4.643e^-5	0.789	INTRON CG34356
3R	14969796	3R_14969796_SNP [dm3] 3R_19144074_SNP [dm6]	G	C	4.710e^-5	0.789	INTRON Ppcs
2R	14754408	2R_14754408_SNP [dm3] 2R_18866903_SNP [dm6]	A	G	4.856e^-5	0.789	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	16545394	2R_16545394_SNP [dm3] 2R_20657889_SNP [dm6]	T	A	4.878e^-5	0.789	UPSTREAM tRNA:CR30155 DOWNSTREAM tRNA:CR30211 INTRON Lrt
3L	1589984	3L_1589984_SNP [dm3] 3L_1589984_SNP [dm6]	A	T	4.882e^-5	0.789	INTRON CG13917
3L	16532066	3L_16532066_DEL [dm3] 3L_16538966_DEL [dm6]	CA	C	4.894e^-5	0.789	INTRON CG43373
X	12848994	X_12848994_SNP [dm3] X_12954961_SNP [dm6]	T	A	4.914e^-5	0.789	INTRON hec
2R	780675	2R_780675_SNP [dm3] 2R_4893170_SNP [dm6]	C	T	4.916e^-5	0.789	INTERGENIC	transposable element FlyBase
2L	11376410	2L_11376410_SNP [dm3] 2L_11376410_SNP [dm6]	T	C	4.918e^-5	0.789	INTERGENIC	regulatory region REDfly_CRMs
X	20056736	X_20056736_SNP [dm3] X_20162703_SNP [dm6]	C	G	4.944e^-5	0.789	UTR_5_PRIME Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3443251	2R_3443251_SNP [dm3] 2R_7555746_SNP [dm6]	T	G	4.995e^-5	0.789	INTRON Corin
2L	9104303	2L_9104303_SNP [dm3] 2L_9104303_SNP [dm6]	G	A	5.069e^-5	0.789	INTERGENIC
3L	12127147	3L_12127147_SNP [dm3] 3L_12134047_SNP [dm6]	C	T	5.086e^-5	0.789	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2R	787845	2R_787845_SNP [dm3] 2R_4900340_SNP [dm6]	C	T	5.107e^-5	0.789	INTRON CG44102	transposable element FlyBase
3L	6375402	3L_6375402_SNP [dm3] 3L_6382302_SNP [dm6]	C	T	5.123e^-5	0.789	INTERGENIC
2R	10820512	2R_10820512_SNP [dm3] 2R_14933007_SNP [dm6]	T	A	5.222e^-5	0.789	SPLICE_SITE_REGION CG10253 UTR_5_PRIME CG10253 UPSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_Trl
2L	19100085	2L_19100085_SNP [dm3] 2L_19100085_SNP [dm6]	G	A	5.222e^-5	0.789	INTRON Lim3
2R	17231213	2R_17231213_SNP [dm3] 2R_21343708_SNP [dm6]	T	A	5.224e^-5	0.789	INTRON CG15666
2R	14755401	2R_14755401_SNP [dm3] 2R_18867896_SNP [dm6]	A	G	5.273e^-5	0.789	UTR_3_PRIME CG43109 DOWNSTREAM DptB
2R	10592170	2R_10592170_SNP [dm3] 2R_14704665_SNP [dm6]	T	G	5.274e^-5	0.789	INTRON mspo
2L	14701951	2L_14701951_INS [dm3] 2L_14701951_INS [dm6]	A	ATTTGT	5.305e^-5	0.789	INTERGENIC
2R	14756238	2R_14756238_SNP [dm3] 2R_18868733_SNP [dm6]	C	T	5.310e^-5	0.789	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2R	14756254	2R_14756254_SNP [dm3] 2R_18868749_SNP [dm6]	A	G	5.338e^-5	0.789	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
2L	11306890	2L_11306890_SNP [dm3] 2L_11306890_SNP [dm6]	A	G	5.340e^-5	0.789	UPSTREAM CR43721 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14753702	2R_14753702_SNP [dm3] 2R_18866197_SNP [dm6]	A	T	5.374e^-5	0.789	UTR_3_PRIME Dpt UPSTREAM CG43071
2L	10344117	2L_10344117_SNP [dm3] 2L_10344117_SNP [dm6]	C	A	5.380e^-5	0.789	UTR_3_PRIME Sps2 UPSTREAM CG5022	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8634627	X_8634627_SNP [dm3] X_8740594_SNP [dm6]	C	T	5.434e^-5	0.789	INTERGENIC
2R	782654	2R_782654_SNP [dm3] 2R_4895149_SNP [dm6]	A	T	5.491e^-5	0.789	DOWNSTREAM CG44102 INTERGENIC	transposable element FlyBase
2L	13041211	2L_13041211_SNP [dm3] 2L_13041211_SNP [dm6]	T	C	5.568e^-5	0.789	INTRON CG9932
3L	1909678	3L_1909678_SNP [dm3] 3L_1909678_SNP [dm6]	G	A	5.685e^-5	0.789	INTRON CG1887
2L	11376420	2L_11376420_SNP [dm3] 2L_11376420_SNP [dm6]	C	A	5.710e^-5	0.789	INTERGENIC	regulatory region REDfly_CRMs
2R	14753686	2R_14753686_SNP [dm3] 2R_18866181_SNP [dm6]	G	T	5.797e^-5	0.789	UTR_3_PRIME Dpt UPSTREAM CG43071
X	6100540	X_6100540_DEL [dm3] X_6206507_DEL [dm6]	GATGTTACCCC...	G	5.841e^-5	0.789	INTERGENIC
2R	14753589	2R_14753589_SNP [dm3] 2R_18866084_SNP [dm6]	C	A	5.844e^-5	0.789	NON_SYNONYMOUS_CODING Dpt UPSTREAM CG43071
2L	12176035	2L_12176035_SNP [dm3] 2L_12176035_SNP [dm6]	G	T	5.863e^-5	0.789	INTRON aret & 1 other
2L	4083523	2L_4083523_SNP [dm3] 2L_4083523_SNP [dm6]	G	C	5.867e^-5	0.789	INTRON ed
2R	12670723	2R_12670723_SNP [dm3] 2R_16783218_SNP [dm6]	T	C	5.930e^-5	0.789	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15841306	2L_15841306_SNP [dm3] 2L_15841306_SNP [dm6]	G	T	6.072e^-5	0.789	EXON CR45694
3R	19070239	3R_19070239_SNP [dm3] 3R_23244517_SNP [dm6]	A	G	6.088e^-5	0.789	INTRON CG4467
2L	7826977	2L_7826977_SNP [dm3] 2L_7826977_SNP [dm6]	C	T	6.160e^-5	0.789	SYNONYMOUS_CODING Rack1 UPSTREAM mts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12957476	2R_12957476_SNP [dm3] 2R_17069971_SNP [dm6]	C	A	6.235e^-5	0.789	NON_SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad
X	17097464	X_17097464_SNP [dm3] X_17203431_SNP [dm6]	A	G	6.242e^-5	0.789	SYNONYMOUS_CODING CG5070 UPSTREAM CG8918
X	6100607	X_6100607_INS [dm3] X_6206574_INS [dm6]	G	GTGATAGGGATGGTTG...	6.296e^-5	0.789	INTERGENIC
2R	678303	2R_678303_SNP [dm3] 2R_4790798_SNP [dm6]	T	C	6.309e^-5	0.789	INTERGENIC	transposable element FlyBase
2R	761838	2R_761838_SNP [dm3] 2R_4874333_SNP [dm6]	C	A	6.325e^-5	0.789	INTERGENIC	transposable element FlyBase
3L	13084264	3L_13084264_SNP [dm3] 3L_13091164_SNP [dm6]	C	T	6.373e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	787859	2R_787859_SNP [dm3] 2R_4900354_SNP [dm6]	G	A	6.374e^-5	0.789	INTRON CG44102	transposable element FlyBase
2R	6975347	2R_6975347_INS [dm3] 2R_11087842_INS [dm6]	T	TCGTCTAGGTT...	6.408e^-5	0.789	UPSTREAM CG43189 INTRON luna & 1 other	TF binding site mE1_TFBS_Kr
2R	673361	2R_673361_DEL [dm3] 2R_4785856_DEL [dm6]	TGAAATTTATTTT...	T	6.547e^-5	0.789	UTR_3_PRIME CG12547 DOWNSTREAM CG12547	transposable element FlyBase
3L	3006724	3L_3006724_SNP [dm3] 3L_3006724_SNP [dm6]	T	C	6.586e^-5	0.789	INTRON FMRFaR
2R	763053	2R_763053_SNP [dm3] 2R_4875548_SNP [dm6]	G	A	6.716e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	19081571	2L_19081571_SNP [dm3] 2L_19081571_SNP [dm6]	C	T	6.801e^-5	0.789	SYNONYMOUS_CODING Lim3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12672546	2R_12672546_SNP [dm3] 2R_16785041_SNP [dm6]	A	G	6.826e^-5	0.789	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25523093	3R_25523093_SNP [dm3] 3R_29697371_SNP [dm6]	G	A	6.826e^-5	0.789	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	924767	X_924767_INS [dm3] X_1030734_INS [dm6]	T	TGTTTGGTATTAGAGTGCAA...	6.862e^-5	0.789	UPSTREAM CG33082 & 2 others INTRON su_w[a]_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	9505718	2R_9505718_SNP [dm3] 2R_13618213_SNP [dm6]	G	T	6.903e^-5	0.789	INTERGENIC
2L	2045950	2L_2045950_SNP [dm3] 2L_2045950_SNP [dm6]	T	G	7.042e^-5	0.789	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3207628	3L_3207628_SNP [dm3] 3L_3207628_SNP [dm6]	G	A	7.065e^-5	0.789	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 INTRON gry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24418025	3R_24418025_SNP [dm3] 3R_28592303_SNP [dm6]	G	A	7.145e^-5	0.789	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	682136	2R_682136_SNP [dm3] 2R_4794631_SNP [dm6]	G	A	7.178e^-5	0.789	INTERGENIC
2R	684455	2R_684455_SNP [dm3] 2R_4796950_SNP [dm6]	G	T	7.178e^-5	0.789	INTERGENIC	transposable element FlyBase
2L	8936895	2L_8936895_SNP [dm3] 2L_8936895_SNP [dm6]	T	C	7.217e^-5	0.789	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13792113	2L_13792113_SNP [dm3] 2L_13792113_SNP [dm6]	T	A	7.263e^-5	0.789	NON_SYNONYMOUS_CODING CG16863	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	761239	2R_761239_SNP [dm3] 2R_4873734_SNP [dm6]	A	G	7.267e^-5	0.789	INTERGENIC	transposable element FlyBase
2R	12786317	2R_12786317_SNP [dm3] 2R_16898812_SNP [dm6]	A	G	7.284e^-5	0.789	SYNONYMOUS_CODING inaC
3R	22474899	3R_22474899_SNP [dm3] 3R_26649177_SNP [dm6]	T	C	7.302e^-5	0.789	UTR_3_PRIME beat-VII
2R	668598	2R_668598_SNP [dm3] 2R_4781093_SNP [dm6]	T	A	7.402e^-5	0.789	INTRON CR43281
3L	8639831	3L_8639831_SNP [dm3] 3L_8646731_SNP [dm6]	T	C	7.451e^-5	0.789	START_GAINED CG13305 UTR_5_PRIME CG13305 UPSTREAM Pex7 DOWNSTREAM Arr2	TF binding site BDTNP1_TFBS_dl
2R	763961	2R_763961_SNP [dm3] 2R_4876456_SNP [dm6]	C	G	7.511e^-5	0.789	INTERGENIC	transposable element FlyBase
2R	763362	2R_763362_SNP [dm3] 2R_4875857_SNP [dm6]	A	C	7.526e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	15455077	2L_15455077_SNP [dm3] 2L_15455077_SNP [dm6]	T	C	7.526e^-5	0.789	INTERGENIC
2R	14752845	2R_14752845_SNP [dm3] 2R_18865340_SNP [dm6]	G	A	7.588e^-5	0.789	UPSTREAM Dpt & 1 other DOWNSTREAM CG43070 INTERGENIC
2R	15989563	2R_15989563_SNP [dm3] 2R_20102058_SNP [dm6]	A	T	7.615e^-5	0.789	INTERGENIC
3L	15935877	3L_15935877_SNP [dm3] 3L_15942777_SNP [dm6]	T	A	7.624e^-5	0.789	INTRON Pka-C3
X	19857675	X_19857675_DEL [dm3] X_19963642_DEL [dm6]	CTGAAAACCCAAGGCATATC...	C	7.690e^-5	0.789	INTRON Nep3
2R	19493823	2R_19493823_SNP [dm3] 2R_23606300_SNP [dm6]	G	A	7.708e^-5	0.789	NON_SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo
2R	17648986	2R_17648986_INS [dm3] 2R_21761481_INS [dm6]	T	TTAACT	7.783e^-5	0.789	INTERGENIC
2R	15248610	2R_15248610_SNP [dm3] 2R_19361105_SNP [dm6]	A	C	7.803e^-5	0.789	SYNONYMOUS_CODING CG11961
2R	15248616	2R_15248616_SNP [dm3] 2R_19361111_SNP [dm6]	T	C	7.803e^-5	0.789	SYNONYMOUS_CODING CG11961
2L	9371233	2L_9371233_DEL [dm3] 2L_9371233_DEL [dm6]	AA	A	7.817e^-5	0.789	UTR_3_PRIME Shawl UPSTREAM CR43865
3L	1847857	3L_1847857_SNP [dm3] 3L_1847857_SNP [dm6]	G	A	7.933e^-5	0.789	INTERGENIC
3L	11003282	3L_11003282_SNP [dm3] 3L_11010182_SNP [dm6]	A	T	7.940e^-5	0.789	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	1081372	2R_1081372_SNP [dm3] 2R_5193867_SNP [dm6]	C	A	7.950e^-5	0.789	INTRON Nipped-A
X	20028096	X_20028096_DEL [dm3] X_20134063_DEL [dm6]	CTGA	C	7.991e^-5	0.789	INTRON CG15322
3L	10264131	3L_10264131_SNP [dm3] 3L_10271031_SNP [dm6]	C	A	8.067e^-5	0.789	DOWNSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2R	749900	2R_749900_SNP [dm3] 2R_4862395_SNP [dm6]	T	C	8.081e^-5	0.789	INTERGENIC	transposable element FlyBase
2L	17212431	2L_17212431_SNP [dm3] 2L_17212431_SNP [dm6]	C	T	8.081e^-5	0.789	INTRON beat-IIIc
2R	18765405	2R_18765405_SNP [dm3] 2R_22877882_SNP [dm6]	A	G	8.088e^-5	0.789	INTRON PIP5K59B
2R	676855	2R_676855_SNP [dm3] 2R_4789350_SNP [dm6]	T	A	8.099e^-5	0.789	UPSTREAM CG12547 INTERGENIC	transposable element FlyBase
2R	17669278	2R_17669278_SNP [dm3] 2R_21781773_SNP [dm6]	T	C	8.115e^-5	0.789	INTERGENIC
2R	6483413	2R_6483413_INS [dm3] 2R_10595908_INS [dm6]	G	GATTTG	8.161e^-5	0.789	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3L	9439334	3L_9439334_SNP [dm3] 3L_9446234_SNP [dm6]	A	C	8.246e^-5	0.789	SYNONYMOUS_CODING CG33926 UPSTREAM CG3529	TF binding site mE1_TFBS_cad
2L	2683232	2L_2683232_SNP [dm3] 2L_2683232_SNP [dm6]	G	A	8.264e^-5	0.789	INTRON CG31690
3L	13434415	3L_13434415_SNP [dm3] 3L_13441315_SNP [dm6]	A	G	8.313e^-5	0.789	UPSTREAM CG10140 INTRON CG14109
2R	713813	2R_713813_SNP [dm3] 2R_4826308_SNP [dm6]	A	G	8.329e^-5	0.789	INTERGENIC	transposable element FlyBase
2L	19081430	2L_19081430_SNP [dm3] 2L_19081430_SNP [dm6]	G	T	8.339e^-5	0.789	SPLICE_SITE_REGION Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17097293	X_17097293_SNP [dm3] X_17203260_SNP [dm6]	A	G	8.454e^-5	0.789	SYNONYMOUS_CODING CG5070 UPSTREAM CG8918
2R	766229	2R_766229_SNP [dm3] 2R_4878724_SNP [dm6]	G	C	8.460e^-5	0.789	INTERGENIC
2R	715529	2R_715529_SNP [dm3] 2R_4828024_SNP [dm6]	G	T	8.473e^-5	0.789	INTERGENIC	transposable element FlyBase
X	17097626	X_17097626_SNP [dm3] X_17203593_SNP [dm6]	A	T	8.474e^-5	0.789	SYNONYMOUS_CODING CG5070 UPSTREAM CG8918
X	8019397	X_8019397_MNP [dm3] X_8125364_MNP [dm6]	TTTA	GCGG	8.566e^-5	0.789	INTRON cyr	TF binding site BDTNP1_TFBS_dl
2R	1035980	2R_1035980_SNP [dm3] 2R_5148475_SNP [dm6]	G	T	8.623e^-5	0.789	NON_SYNONYMOUS_CODING Atf6
2R	19305435	2R_19305435_INS [dm3] 2R_23417912_INS [dm6]	A	AA	8.641e^-5	0.789	DOWNSTREAM CG30411 INTRON CG9812
2R	17378918	2R_17378918_SNP [dm3] 2R_21491413_SNP [dm6]	T	G	8.642e^-5	0.789	INTRON Fkbp14
2R	14754367	2R_14754367_SNP [dm3] 2R_18866862_SNP [dm6]	C	T	8.646e^-5	0.789	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	14754411	2R_14754411_INS [dm3] 2R_18866906_INS [dm6]	T	TTGTAT	8.646e^-5	0.789	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
X	6101702	X_6101702_SNP [dm3] X_6207669_SNP [dm6]	A	C	8.653e^-5	0.789	INTERGENIC
X	9119116	X_9119116_SNP [dm3] X_9225083_SNP [dm6]	G	A	8.656e^-5	0.789	UPSTREAM CG15370 INTERGENIC
2R	758846	2R_758846_SNP [dm3] 2R_4871341_SNP [dm6]	C	A	8.699e^-5	0.789	INTERGENIC
2R	788437	2R_788437_SNP [dm3] 2R_4900932_SNP [dm6]	T	A	8.712e^-5	0.789	INTRON CG44102	transposable element FlyBase
3L	10151074	3L_10151074_SNP [dm3] 3L_10157974_SNP [dm6]	C	A	8.723e^-5	0.789	INTRON dpr10
2R	18399732	2R_18399732_SNP [dm3] 2R_22512227_SNP [dm6]	A	G	8.760e^-5	0.789	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
2L	11387247	2L_11387247_SNP [dm3] 2L_11387247_SNP [dm6]	G	A	8.771e^-5	0.789	DOWNSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
3R	26080981	3R_26080981_SNP [dm3] 3R_30255259_SNP [dm6]	C	A	8.782e^-5	0.789	INTERGENIC
2L	8449097	2L_8449097_SNP [dm3] 2L_8449097_SNP [dm6]	C	T	8.785e^-5	0.789	SPLICE_SITE_REGION U26 SYNONYMOUS_CODING U26 DOWNSTREAM fu12
X	16230581	X_16230581_SNP [dm3] X_16336548_SNP [dm6]	C	A	8.821e^-5	0.789	SYNONYMOUS_CODING Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21386899	3R_21386899_SNP [dm3] 3R_25561177_SNP [dm6]	G	A	8.904e^-5	0.789	INTRON msi
3L	4838825	3L_4838825_SNP [dm3] 3L_4838825_SNP [dm6]	A	G	8.922e^-5	0.789	UTR_5_PRIME CG13707 INTRON CG13707
3L	4838899	3L_4838899_SNP [dm3] 3L_4838899_SNP [dm6]	G	A	8.922e^-5	0.789	INTRON CG13707
3L	7057687	3L_7057687_SNP [dm3] 3L_7064587_SNP [dm6]	C	T	9.020e^-5	0.789	INTRON CG8641
3L	12445571	3L_12445571_SNP [dm3] 3L_12452471_SNP [dm6]	C	T	9.048e^-5	0.789	INTERGENIC
3L	5495045	3L_5495045_SNP [dm3] 3L_5501945_SNP [dm6]	G	A	9.068e^-5	0.789	UPSTREAM CR44519 INTERGENIC
2R	14651109	2R_14651109_SNP [dm3] 2R_18763604_SNP [dm6]	T	C	9.099e^-5	0.789	INTRON Mctp
2L	10723757	2L_10723757_SNP [dm3] 2L_10723757_SNP [dm6]	T	A	9.172e^-5	0.789	UPSTREAM CG6431 INTERGENIC
2R	9505716	2R_9505716_SNP [dm3] 2R_13618211_SNP [dm6]	C	T	9.176e^-5	0.789	INTERGENIC
3L	8838806	3L_8838806_SNP [dm3] 3L_8845706_SNP [dm6]	T	G	9.218e^-5	0.789	INTRON dally
X	20040113	X_20040113_SNP [dm3] X_20146080_SNP [dm6]	A	T	9.232e^-5	0.789	INTERGENIC
X	3253267	X_3253267_MNP [dm3] X_3359234_MNP [dm6]	GTC	AAT	9.251e^-5	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9774080	2L_9774080_SNP [dm3] 2L_9774080_SNP [dm6]	A	G	9.297e^-5	0.789	SYNONYMOUS_CODING ppk11
2R	780268	2R_780268_SNP [dm3] 2R_4892763_SNP [dm6]	G	A	9.314e^-5	0.789	INTERGENIC	transposable element FlyBase
X	7883711	X_7883711_SNP [dm3] X_7989678_SNP [dm6]	G	A	9.398e^-5	0.789	INTERGENIC
2R	1018767	2R_1018767_SNP [dm3] 2R_5131262_SNP [dm6]	C	T	9.461e^-5	0.789	INTERGENIC	transposable element FlyBase
2L	8945213	2L_8945213_SNP [dm3] 2L_8945213_SNP [dm6]	T	C	9.494e^-5	0.789	INTRON C1GalTA	TF binding site mE1_TFBS_cad
3L	11003277	3L_11003277_SNP [dm3] 3L_11010177_SNP [dm6]	G	T	9.499e^-5	0.789	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4278602	2L_4278602_SNP [dm3] 2L_4278602_SNP [dm6]	T	C	9.516e^-5	0.789	NON_SYNONYMOUS_CODING Art2
2L	7631175	2L_7631175_SNP [dm3] 2L_7631175_SNP [dm6]	C	A	9.583e^-5	0.789	INTERGENIC
X	20236717	X_20236717_SNP [dm3] X_20365690_SNP [dm6]	T	A	9.599e^-5	0.789	INTERGENIC
2L	13980790	2L_13980790_SNP [dm3] 2L_13980790_SNP [dm6]	T	G	9.608e^-5	0.789	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
2R	14754433	2R_14754433_DEL [dm3] 2R_18866928_DEL [dm6]	TAT	T	9.707e^-5	0.789	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2L	988963	2L_988963_SNP [dm3] 2L_988963_SNP [dm6]	G	T	9.717e^-5	0.789	EXON CR44801	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3842082	3L_3842082_SNP [dm3] 3L_3842082_SNP [dm6]	C	G	9.802e^-5	0.789	UTR_3_PRIME enc DOWNSTREAM enc
3R	19070234	3R_19070234_SNP [dm3] 3R_23244512_SNP [dm6]	A	G	9.841e^-5	0.789	INTRON CG4467
3R	25523265	3R_25523265_SNP [dm3] 3R_29697543_SNP [dm6]	A	C	9.865e^-5	0.789	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10686264	2L_10686264_SNP [dm3] 2L_10686264_SNP [dm6]	T	C	9.886e^-5	0.789	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
2R	780404	2R_780404_INS [dm3] 2R_4892899_INS [dm6]	T	CAATA	9.907e^-5	0.789	INTERGENIC	transposable element FlyBase
2L	8967618	2L_8967618_SNP [dm3] 2L_8967618_SNP [dm6]	C	T	9.918e^-5	0.789	SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
X	6100662	X_6100662_SNP [dm3] X_6206629_SNP [dm6]	G	T	9.972e^-5	0.789	INTERGENIC
2R	14232136	2R_14232136_SNP [dm3] 2R_18344631_SNP [dm6]	C	A	1.014e^-4	0.789	INTRON sbb
3L	11628384	3L_11628384_SNP [dm3] 3L_11635284_SNP [dm6]	C	T	1.015e^-4	0.789	INTRON CG32091
2L	13883478	2L_13883478_SNP [dm3] 2L_13883478_SNP [dm6]	A	C	1.018e^-4	0.789	INTRON CenG1A
X	14614898	X_14614898_SNP [dm3] X_14720865_SNP [dm6]	T	G	1.021e^-4	0.789	INTRON NetB
2L	8937098	2L_8937098_SNP [dm3] 2L_8937098_SNP [dm6]	G	A	1.026e^-4	0.789	UPSTREAM Tsp29Fb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14509614	2R_14509614_SNP [dm3] 2R_18622109_SNP [dm6]	G	T	1.027e^-4	0.789	SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20401848	X_20401848_SNP [dm3] X_20530821_SNP [dm6]	C	T	1.044e^-4	0.789	INTERGENIC
2R	781888	2R_781888_SNP [dm3] 2R_4894383_SNP [dm6]	T	G	1.051e^-4	0.789	INTERGENIC	transposable element FlyBase
2R	16015144	2R_16015144_SNP [dm3] 2R_20127639_SNP [dm6]	C	T	1.053e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6763848	3R_6763848_DEL [dm3] 3R_10938126_DEL [dm6]	CC	C	1.055e^-4	0.789	INTERGENIC
2R	13364598	2R_13364598_SNP [dm3] 2R_17477093_SNP [dm6]	C	T	1.058e^-4	0.789	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	13819267	3L_13819267_SNP [dm3] 3L_13826167_SNP [dm6]	G	A	1.059e^-4	0.789	INTERGENIC
2L	12516588	2L_12516588_SNP [dm3] 2L_12516588_SNP [dm6]	A	G	1.062e^-4	0.789	SYNONYMOUS_CODING bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26056024	3R_26056024_SNP [dm3] 3R_30230302_SNP [dm6]	A	C	1.065e^-4	0.789	INTERGENIC
2R	787985	2R_787985_SNP [dm3] 2R_4900480_SNP [dm6]	G	A	1.065e^-4	0.789	INTRON CG44102	transposable element FlyBase
3R	19430499	3R_19430499_SNP [dm3] 3R_23604777_SNP [dm6]	C	A	1.069e^-4	0.789	DOWNSTREAM CG31145 INTRON CG10184	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17976121	X_17976121_SNP [dm3] X_18082088_SNP [dm6]	G	A	1.069e^-4	0.789	SYNONYMOUS_CODING CG7536
X	14614886	X_14614886_SNP [dm3] X_14720853_SNP [dm6]	G	A	1.070e^-4	0.789	INTRON NetB
3L	15935943	3L_15935943_SNP [dm3] 3L_15942843_SNP [dm6]	G	A	1.076e^-4	0.789	INTRON Pka-C3
2R	14752617	2R_14752617_SNP [dm3] 2R_18865112_SNP [dm6]	T	G	1.079e^-4	0.789	UPSTREAM Dpt DOWNSTREAM CG43070 INTRON CG43071
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	1.083e^-4	0.789	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	12883661	3L_12883661_SNP [dm3] 3L_12890561_SNP [dm6]	T	C	1.090e^-4	0.789	NON_SYNONYMOUS_CODING CG43894 UPSTREAM CR45748 INTRON CG43894
3R	22804564	3R_22804564_SNP [dm3] 3R_26978842_SNP [dm6]	C	A	1.095e^-4	0.789	NON_SYNONYMOUS_CODING CG14253 DOWNSTREAM CG5521
2R	10774811	2R_10774811_SNP [dm3] 2R_14887306_SNP [dm6]	G	T	1.097e^-4	0.789	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
3L	8258648	3L_8258648_SNP [dm3] 3L_8265548_SNP [dm6]	G	A	1.104e^-4	0.789	INTRON Dscam4
2L	4051313	2L_4051313_SNP [dm3] 2L_4051313_SNP [dm6]	A	T	1.108e^-4	0.789	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	20256858	3L_20256858_SNP [dm3] 3L_20263758_SNP [dm6]	T	C	1.108e^-4	0.789	INTRON rdgC	TF binding site mE1_TFBS_inv
2L	2276236	2L_2276236_SNP [dm3] 2L_2276236_SNP [dm6]	C	T	1.119e^-4	0.789	INTRON CR43753 EXON CR43753
3L	16837577	3L_16837577_SNP [dm3] 3L_16844477_SNP [dm6]	C	A	1.124e^-4	0.789	UTR_3_PRIME TSG101 UPSTREAM CG9715 DOWNSTREAM CG9669	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	14646094	2R_14646094_SNP [dm3] 2R_18758589_SNP [dm6]	G	A	1.133e^-4	0.789	SPLICE_SITE_REGION Jabba INTRON Jabba	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17752060	2R_17752060_SNP [dm3] 2R_21864555_SNP [dm6]	G	A	1.136e^-4	0.789	DOWNSTREAM comr INTERGENIC
3L	15445362	3L_15445362_SNP [dm3] 3L_15452262_SNP [dm6]	A	G	1.139e^-4	0.789	INTERGENIC
X	13200743	X_13200743_SNP [dm3] X_13306710_SNP [dm6]	T	G	1.140e^-4	0.789	SYNONYMOUS_CODING IP3K2 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19129403	2L_19129403_SNP [dm3] 2L_19129403_SNP [dm6]	G	A	1.151e^-4	0.789	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	16949078	2R_16949078_SNP [dm3] 2R_21061573_SNP [dm6]	G	A	1.159e^-4	0.789	UTR_3_PRIME mRpL54 UPSTREAM Cht8	TF binding site mE1_TFBS_sens
2L	7688337	2L_7688337_SNP [dm3] 2L_7688337_SNP [dm6]	C	G	1.160e^-4	0.789	NON_SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
2L	4790558	2L_4790558_SNP [dm3] 2L_4790558_SNP [dm6]	A	T	1.161e^-4	0.789	INTRON CG15630
2R	1076702	2R_1076702_SNP [dm3] 2R_5189197_SNP [dm6]	T	A	1.161e^-4	0.789	INTRON Nipped-A	transposable element FlyBase
3L	9908524	3L_9908524_SNP [dm3] 3L_9915424_SNP [dm6]	C	G	1.163e^-4	0.789	INTRON CG34356
2R	15213519	2R_15213519_SNP [dm3] 2R_19326014_SNP [dm6]	G	T	1.166e^-4	0.789	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	6967320	2R_6967320_SNP [dm3] 2R_11079815_SNP [dm6]	T	C	1.169e^-4	0.789	INTRON luna
2R	14754322	2R_14754322_INS [dm3] 2R_18866817_INS [dm6]	T	TTGCTTTTTCTT...	1.169e^-4	0.789	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
3R	21753978	3R_21753978_SNP [dm3] 3R_25928256_SNP [dm6]	T	G	1.171e^-4	0.789	INTRON CCAP-R
2L	7688341	2L_7688341_SNP [dm3] 2L_7688341_SNP [dm6]	G	A	1.177e^-4	0.789	SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
3L	13434558	3L_13434558_SNP [dm3] 3L_13441458_SNP [dm6]	A	G	1.189e^-4	0.789	UPSTREAM CG10140 INTRON CG14109	TF binding site mE1_TFBS_HSA
3L	10264133	3L_10264133_SNP [dm3] 3L_10271033_SNP [dm6]	A	G	1.196e^-4	0.789	DOWNSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2R	16304273	2R_16304273_SNP [dm3] 2R_20416768_SNP [dm6]	C	A	1.197e^-4	0.789	INTERGENIC
3L	8719363	3L_8719363_SNP [dm3] 3L_8726263_SNP [dm6]	G	A	1.197e^-4	0.789	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC
3L	8999109	3L_8999109_SNP [dm3] 3L_9006009_SNP [dm6]	A	G	1.197e^-4	0.789	SYNONYMOUS_CODING Doc3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12550731	2L_12550731_DEL [dm3] 2L_12550731_DEL [dm6]	AA	A	1.199e^-4	0.789	INTERGENIC
2R	3623965	2R_3623965_SNP [dm3] 2R_7736460_SNP [dm6]	A	G	1.203e^-4	0.789	UPSTREAM CG18812 DOWNSTREAM CG30497 & 1 other INTERGENIC
2L	12725735	2L_12725735_SNP [dm3] 2L_12725735_SNP [dm6]	C	T	1.227e^-4	0.789	SYNONYMOUS_CODING MRP
3R	15426139	3R_15426139_SNP [dm3] 3R_19600417_SNP [dm6]	A	G	1.229e^-4	0.789	UPSTREAM CG7333 INTERGENIC
X	17097212	X_17097212_SNP [dm3] X_17203179_SNP [dm6]	T	C	1.230e^-4	0.789	UTR_5_PRIME CG5070 UPSTREAM CG8918
2R	781846	2R_781846_SNP [dm3] 2R_4894341_SNP [dm6]	A	G	1.240e^-4	0.789	INTERGENIC	transposable element FlyBase
X	17276858	X_17276858_SNP [dm3] X_17382825_SNP [dm6]	C	G	1.241e^-4	0.789	INTERGENIC
2R	6942078	2R_6942078_SNP [dm3] 2R_11054573_SNP [dm6]	G	C	1.250e^-4	0.789	INTRON luna
2L	2045958	2L_2045958_SNP [dm3] 2L_2045958_SNP [dm6]	A	G	1.250e^-4	0.789	SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8834145	3L_8834145_SNP [dm3] 3L_8841045_SNP [dm6]	C	G	1.259e^-4	0.789	INTRON dally
3L	3843140	3L_3843140_DEL [dm3] 3L_3843140_DEL [dm6]	CT	C	1.294e^-4	0.789	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	18369604	2L_18369604_SNP [dm3] 2L_18369604_SNP [dm6]	G	A	1.308e^-4	0.789	INTRON Fas3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9632298	2R_9632298_SNP [dm3] 2R_13744793_SNP [dm6]	A	G	1.312e^-4	0.789	INTRON fas
3R	17358439	3R_17358439_SNP [dm3] 3R_21532717_SNP [dm6]	T	C	1.318e^-4	0.789	EXON CR43372
3L	6571519	3L_6571519_SNP [dm3] 3L_6578419_SNP [dm6]	C	T	1.320e^-4	0.789	INTRON CG18769 & 1 other
2L	9381584	2L_9381584_SNP [dm3] 2L_9381584_SNP [dm6]	G	A	1.324e^-4	0.789	INTRON Shawl
3R	24257966	3R_24257966_SNP [dm3] 3R_28432244_SNP [dm6]	G	A	1.326e^-4	0.789	INTRON beat-VI
2R	10812470	2R_10812470_SNP [dm3] 2R_14924965_SNP [dm6]	T	A	1.328e^-4	0.789	INTRON CG10249
X	9803224	X_9803224_DEL [dm3] X_9909191_DEL [dm6]	ATCTTAAGTA	A	1.330e^-4	0.789	UTR_3_PRIME CG1986 DOWNSTREAM CG1986	insulator Insulator_Class_II.mE01
3L	2937631	3L_2937631_SNP [dm3] 3L_2937631_SNP [dm6]	T	A	1.336e^-4	0.789	INTRON Shab
3L	15936273	3L_15936273_SNP [dm3] 3L_15943173_SNP [dm6]	A	G	1.339e^-4	0.789	INTRON Pka-C3
X	20429014	X_20429014_SNP [dm3] X_20557987_SNP [dm6]	T	C	1.342e^-4	0.789	INTRON RunxB
2R	6942081	2R_6942081_SNP [dm3] 2R_11054576_SNP [dm6]	A	C	1.352e^-4	0.789	INTRON luna
3R	16456918	3R_16456918_SNP [dm3] 3R_20631196_SNP [dm6]	T	C	1.364e^-4	0.789	SYNONYMOUS_CODING Pi3K92E
2R	14756701	2R_14756701_SNP [dm3] 2R_18869196_SNP [dm6]	C	G	1.368e^-4	0.789	INTERGENIC
2L	18639147	2L_18639147_SNP [dm3] 2L_18639147_SNP [dm6]	G	T	1.369e^-4	0.789	INTRON MESR3
2R	12367120	2R_12367120_SNP [dm3] 2R_16479615_SNP [dm6]	T	G	1.384e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2994236	3L_2994236_SNP [dm3] 3L_2994236_SNP [dm6]	C	A	1.397e^-4	0.789	UPSTREAM CG2113 INTERGENIC
X	8054724	X_8054724_SNP [dm3] X_8160691_SNP [dm6]	T	C	1.397e^-4	0.789	SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo
3R	20405232	3R_20405232_SNP [dm3] 3R_24579510_SNP [dm6]	G	A	1.398e^-4	0.789	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10807234	3R_10807234_SNP [dm3] 3R_14981512_SNP [dm6]	C	G	1.402e^-4	0.789	INTERGENIC
X	20052783	X_20052783_SNP [dm3] X_20158750_SNP [dm6]	G	A	1.407e^-4	0.789	INTRON Rab35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8917220	3L_8917220_SNP [dm3] 3L_8924120_SNP [dm6]	G	A	1.408e^-4	0.789	INTRON Tsp66E
3R	21386896	3R_21386896_SNP [dm3] 3R_25561174_SNP [dm6]	A	G	1.412e^-4	0.789	INTRON msi
X	20606703	X_20606703_SNP [dm3] X_20735676_SNP [dm6]	A	C	1.414e^-4	0.789	NON_SYNONYMOUS_CODING CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19329855	3R_19329855_SNP [dm3] 3R_23504133_SNP [dm6]	C	T	1.416e^-4	0.789	INTERGENIC
X	5838411	X_5838411_SNP [dm3] X_5944378_SNP [dm6]	G	A	1.419e^-4	0.789	SYNONYMOUS_CODING CG12728
3L	8605017	3L_8605017_SNP [dm3] 3L_8611917_SNP [dm6]	T	G	1.450e^-4	0.789	INTRON CG6282
3R	15092897	3R_15092897_SNP [dm3] 3R_19267175_SNP [dm6]	G	A	1.452e^-4	0.789	INTERGENIC
3L	18605763	3L_18605763_SNP [dm3] 3L_18612663_SNP [dm6]	A	C	1.458e^-4	0.789	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3L	18605767	3L_18605767_SNP [dm3] 3L_18612667_SNP [dm6]	G	C	1.458e^-4	0.789	NON_SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
2R	16949061	2R_16949061_SNP [dm3] 2R_21061556_SNP [dm6]	T	C	1.459e^-4	0.789	UTR_3_PRIME mRpL54 UPSTREAM Cht8	TF binding site mE1_TFBS_sens
X	11658949	X_11658949_SNP [dm3] X_11764916_SNP [dm6]	C	G	1.461e^-4	0.789	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17473506	2R_17473506_SNP [dm3] 2R_21586001_SNP [dm6]	C	A	1.465e^-4	0.789	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13434404	3L_13434404_INS [dm3] 3L_13441304_INS [dm6]	G	CTT	1.465e^-4	0.789	UPSTREAM CG10140 INTRON CG14109
X	18640297	X_18640297_SNP [dm3] X_18746264_SNP [dm6]	T	C	1.477e^-4	0.789	DOWNSTREAM CG12609 INTERGENIC
X	15541413	X_15541413_SNP [dm3] X_15647380_SNP [dm6]	T	G	1.478e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11305847	2L_11305847_SNP [dm3] 2L_11305847_SNP [dm6]	C	A	1.482e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6073743	2R_6073743_SNP [dm3] 2R_10186238_SNP [dm6]	T	C	1.489e^-4	0.789	INTRON KCNQ
3L	14200919	3L_14200919_SNP [dm3] 3L_14207819_SNP [dm6]	A	G	1.497e^-4	0.789	INTRON nuf
2R	15989523	2R_15989523_SNP [dm3] 2R_20102018_SNP [dm6]	C	A	1.507e^-4	0.789	INTERGENIC
3L	17697020	3L_17697020_SNP [dm3] 3L_17703920_SNP [dm6]	A	C	1.511e^-4	0.789	INTRON Ccn
2L	9918419	2L_9918419_DEL [dm3] 2L_9918419_DEL [dm6]	TT	T	1.512e^-4	0.789	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18817557	X_18817557_SNP [dm3] X_18923524_SNP [dm6]	C	A	1.526e^-4	0.789	INTERGENIC
3R	15058088	3R_15058088_SNP [dm3] 3R_19232366_SNP [dm6]	A	G	1.533e^-4	0.789	SYNONYMOUS_CODING unc79
3L	11728420	3L_11728420_SNP [dm3] 3L_11735320_SNP [dm6]	G	T	1.545e^-4	0.789	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
X	11658950	X_11658950_SNP [dm3] X_11764917_SNP [dm6]	T	G	1.548e^-4	0.789	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	15936658	3L_15936658_SNP [dm3] 3L_15943558_SNP [dm6]	C	T	1.548e^-4	0.789	INTRON Pka-C3
3L	6571392	3L_6571392_SNP [dm3] 3L_6578292_SNP [dm6]	T	A	1.550e^-4	0.789	INTRON CG18769 & 1 other
2R	16345537	2R_16345537_SNP [dm3] 2R_20458032_SNP [dm6]	C	T	1.550e^-4	0.789	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	14753710	2R_14753710_SNP [dm3] 2R_18866205_SNP [dm6]	A	G	1.559e^-4	0.789	UTR_3_PRIME Dpt UPSTREAM CG43071
2L	1445182	2L_1445182_SNP [dm3] 2L_1445182_SNP [dm6]	G	T	1.561e^-4	0.789	INTERGENIC
4	690976	4_690976_DEL [dm3] 4_670350_DEL [dm6]	GCCTCGCCCAATCTTTTGAA...	G	1.565e^-4	0.789	UPSTREAM CG11360 DOWNSTREAM Slip1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	17683859	2R_17683859_SNP [dm3] 2R_21796354_SNP [dm6]	T	A	1.571e^-4	0.789	UPSTREAM CG34204 INTERGENIC
3L	3843139	3L_3843139_SNP [dm3] 3L_3843139_SNP [dm6]	C	T	1.583e^-4	0.789	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	8641107	3L_8641107_SNP [dm3] 3L_8648007_SNP [dm6]	G	A	1.584e^-4	0.789	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20013184	X_20013184_SNP [dm3] X_20119151_SNP [dm6]	C	T	1.593e^-4	0.789	INTERGENIC
2R	12479132	2R_12479132_SNP [dm3] 2R_16591627_SNP [dm6]	C	T	1.596e^-4	0.789	INTRON CG8306
2L	9646922	2L_9646922_SNP [dm3] 2L_9646922_SNP [dm6]	A	C	1.599e^-4	0.789	INTRON Apoltp
2R	14752178	2R_14752178_MNP [dm3] 2R_18864673_MNP [dm6]	ATG	CAA	1.604e^-4	0.789	UTR_3_PRIME CG43071 DOWNSTREAM CG43071 & 1 other
2R	19863226	2R_19863226_SNP [dm3] 2R_23975703_SNP [dm6]	T	G	1.606e^-4	0.789	UTR_3_PRIME Gadd34 DOWNSTREAM mr
3L	3253790	3L_3253790_SNP [dm3] 3L_3253790_SNP [dm6]	C	T	1.614e^-4	0.789	EXON CR43626
2R	4473184	2R_4473184_SNP [dm3] 2R_8585679_SNP [dm6]	C	T	1.617e^-4	0.789	UPSTREAM CG42326 INTERGENIC
3R	26080626	3R_26080626_SNP [dm3] 3R_30254904_SNP [dm6]	T	C	1.617e^-4	0.789	DOWNSTREAM CG18404 INTERGENIC
3R	22098480	3R_22098480_SNP [dm3] 3R_26272758_SNP [dm6]	G	A	1.622e^-4	0.789	INTRON CG6154
2L	13962825	2L_13962825_SNP [dm3] 2L_13962825_SNP [dm6]	T	A	1.624e^-4	0.789	UTR_3_PRIME NimA UPSTREAM NimB1
3R	18575447	3R_18575447_SNP [dm3] 3R_22749725_SNP [dm6]	T	A	1.629e^-4	0.789	SYNONYMOUS_CODING rumi UPSTREAM CG31139	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	2292149	3L_2292149_SNP [dm3] 3L_2292149_SNP [dm6]	T	G	1.634e^-4	0.789	INTRON MsR2
2L	9625420	2L_9625420_SNP [dm3] 2L_9625420_SNP [dm6]	A	G	1.638e^-4	0.789	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26643922	3R_26643922_SNP [dm3] 3R_30818200_SNP [dm6]	T	C	1.641e^-4	0.789	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	15282349	2L_15282349_INS [dm3] 2L_15282349_INS [dm6]	A	ACC	1.641e^-4	0.789	INTERGENIC
2R	19894558	2R_19894558_SNP [dm3] 2R_24007035_SNP [dm6]	C	G	1.643e^-4	0.789	NON_SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
2R	14269989	2R_14269989_SNP [dm3] 2R_18382484_SNP [dm6]	G	C	1.656e^-4	0.789	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2L	12725164	2L_12725164_SNP [dm3] 2L_12725164_SNP [dm6]	T	A	1.656e^-4	0.789	INTRON MRP
2L	12725341	2L_12725341_SNP [dm3] 2L_12725341_SNP [dm6]	T	C	1.656e^-4	0.789	INTRON MRP
2L	12726295	2L_12726295_SNP [dm3] 2L_12726295_SNP [dm6]	G	C	1.656e^-4	0.789	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10330273	3L_10330273_SNP [dm3] 3L_10337173_SNP [dm6]	A	T	1.656e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14753842	2R_14753842_SNP [dm3] 2R_18866337_SNP [dm6]	T	A	1.660e^-4	0.789	DOWNSTREAM Dpt INTERGENIC
3L	9430908	3L_9430908_SNP [dm3] 3L_9437808_SNP [dm6]	T	G	1.661e^-4	0.789	SYNONYMOUS_CODING MTF-1 DOWNSTREAM Bet3 INTRON MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3751372	2L_3751372_DEL [dm3] 2L_3751372_DEL [dm6]	AGATTCACTATATTTT...	C	1.671e^-4	0.789	INTRON CG10019
X	14614896	X_14614896_SNP [dm3] X_14720863_SNP [dm6]	C	T	1.681e^-4	0.789	INTRON NetB
X	18162423	X_18162423_SNP [dm3] X_18268390_SNP [dm6]	G	A	1.683e^-4	0.789	INTERGENIC
2R	14642323	2R_14642323_SNP [dm3] 2R_18754818_SNP [dm6]	G	T	1.684e^-4	0.789	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
2L	1085176	2L_1085176_SNP [dm3] 2L_1085176_SNP [dm6]	C	G	1.686e^-4	0.789	UTR_3_PRIME Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20012318	3R_20012318_SNP [dm3] 3R_24186596_SNP [dm6]	C	A	1.697e^-4	0.789	SPLICE_SITE_REGION CHORD INTRON CHORD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2806270	3L_2806270_SNP [dm3] 3L_2806270_SNP [dm6]	A	C	1.700e^-4	0.789	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	9381602	2L_9381602_SNP [dm3] 2L_9381602_SNP [dm6]	T	C	1.704e^-4	0.789	INTRON Shawl
2R	14270076	2R_14270076_SNP [dm3] 2R_18382571_SNP [dm6]	A	T	1.709e^-4	0.789	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
X	9733761	X_9733761_SNP [dm3] X_9839728_SNP [dm6]	G	A	1.728e^-4	0.789	INTRON CG32698
X	18148265	X_18148265_DEL [dm3] X_18254232_DEL [dm6]	CTT	GA	1.732e^-4	0.789	INTERGENIC
2R	1033261	2R_1033261_DEL [dm3] 2R_5145756_DEL [dm6]	AA	A	1.742e^-4	0.789	INTRON Atf6
2R	14754328	2R_14754328_SNP [dm3] 2R_18866823_SNP [dm6]	G	A	1.744e^-4	0.789	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
2R	703261	2R_703261_SNP [dm3] 2R_4815756_SNP [dm6]	G	A	1.749e^-4	0.789	UTR_3_PRIME CG17528
2R	17675076	2R_17675076_SNP [dm3] 2R_21787571_SNP [dm6]	T	A	1.750e^-4	0.789	INTERGENIC
2R	17675077	2R_17675077_SNP [dm3] 2R_21787572_SNP [dm6]	C	T	1.750e^-4	0.789	INTERGENIC
X	9728057	X_9728057_SNP [dm3] X_9834024_SNP [dm6]	G	T	1.752e^-4	0.789	INTRON CG32698
2R	16624226	2R_16624226_SNP [dm3] 2R_20736721_SNP [dm6]	A	G	1.752e^-4	0.789	INTRON dpr
2R	14754212	2R_14754212_SNP [dm3] 2R_18866707_SNP [dm6]	C	T	1.754e^-4	0.789	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
2L	8965717	2L_8965717_SNP [dm3] 2L_8965717_SNP [dm6]	C	A	1.760e^-4	0.789	SPLICE_SITE_REGION CG32984 INTRON CG32984
2L	3220779	2L_3220779_SNP [dm3] 2L_3220779_SNP [dm6]	T	A	1.765e^-4	0.789	INTERGENIC
3R	15426599	3R_15426599_SNP [dm3] 3R_19600877_SNP [dm6]	G	A	1.767e^-4	0.789	SPLICE_SITE_REGION CG7333 INTRON CG7333
3L	6571510	3L_6571510_SNP [dm3] 3L_6578410_SNP [dm6]	A	T	1.768e^-4	0.789	INTRON CG18769 & 1 other
2R	19495536	2R_19495536_SNP [dm3] 2R_23608013_SNP [dm6]	C	T	1.771e^-4	0.789	SYNONYMOUS_CODING CG4019 INTRON CG17664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19277709	3L_19277709_SNP [dm3] 3L_19284609_SNP [dm6]	T	A	1.776e^-4	0.789	SYNONYMOUS_CODING Gbs-76A
2L	9405390	2L_9405390_SNP [dm3] 2L_9405390_SNP [dm6]	G	A	1.781e^-4	0.789	INTRON Shawl
X	20308829	X_20308829_SNP [dm3] X_20437802_SNP [dm6]	C	G	1.782e^-4	0.789	INTRON CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10277243	3L_10277243_SNP [dm3] 3L_10284143_SNP [dm6]	C	T	1.785e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19998890	X_19998890_SNP [dm3] X_20104857_SNP [dm6]	G	T	1.789e^-4	0.789	INTERGENIC
3L	18605760	3L_18605760_SNP [dm3] 3L_18612660_SNP [dm6]	C	A	1.789e^-4	0.789	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3L	6571400	3L_6571400_SNP [dm3] 3L_6578300_SNP [dm6]	C	T	1.793e^-4	0.789	INTRON CG18769 & 1 other
2R	14642327	2R_14642327_SNP [dm3] 2R_18754822_SNP [dm6]	A	G	1.797e^-4	0.789	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
2L	797849	2L_797849_SNP [dm3] 2L_797849_SNP [dm6]	T	C	1.806e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4647971	2L_4647971_SNP [dm3] 2L_4647971_SNP [dm6]	A	C	1.809e^-4	0.789	DOWNSTREAM CG43798 INTERGENIC
2R	16978030	2R_16978030_SNP [dm3] 2R_21090525_SNP [dm6]	A	G	1.813e^-4	0.789	SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7883744	X_7883744_SNP [dm3] X_7989711_SNP [dm6]	A	G	1.817e^-4	0.789	INTERGENIC
2R	14754672	2R_14754672_SNP [dm3] 2R_18867167_SNP [dm6]	G	A	1.820e^-4	0.789	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
X	7883706	X_7883706_SNP [dm3] X_7989673_SNP [dm6]	T	A	1.824e^-4	0.789	INTERGENIC
2R	14644365	2R_14644365_SNP [dm3] 2R_18756860_SNP [dm6]	A	C	1.838e^-4	0.789	SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Jabba
3L	3207774	3L_3207774_SNP [dm3] 3L_3207774_SNP [dm6]	C	G	1.846e^-4	0.789	NON_SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 INTRON gry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15282345	2L_15282345_INS [dm3] 2L_15282345_INS [dm6]	C	TTAACAAT	1.854e^-4	0.789	INTERGENIC
X	5902046	X_5902046_SNP [dm3] X_6008013_SNP [dm6]	C	T	1.859e^-4	0.789	DOWNSTREAM mab-21 INTERGENIC
3L	10538023	3L_10538023_SNP [dm3] 3L_10544923_SNP [dm6]	A	C	1.862e^-4	0.789	INTRON A2bp1
3R	18598600	3R_18598600_DEL [dm3] 3R_22772878_DEL [dm6]	GC	T	1.862e^-4	0.789	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
2R	19626102	2R_19626102_SNP [dm3] 2R_23738579_SNP [dm6]	G	A	1.864e^-4	0.789	INTRON egl	TF binding site mE1_TFBS_chinmo
3L	12126790	3L_12126790_SNP [dm3] 3L_12133690_SNP [dm6]	C	T	1.881e^-4	0.789	SYNONYMOUS_CODING CG11534 DOWNSTREAM CG5645	TF binding site BDTNP1_TFBS_twi
2R	6051140	2R_6051140_SNP [dm3] 2R_10163635_SNP [dm6]	C	T	1.883e^-4	0.789	INTRON KCNQ
3L	11628450	3L_11628450_INS [dm3] 3L_11635350_INS [dm6]	G	GTTTTAACTTCAG...	1.884e^-4	0.789	INTRON CG32091
X	20621281	X_20621281_SNP [dm3] X_20750254_SNP [dm6]	C	A	1.897e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16949437	2R_16949437_SNP [dm3] 2R_21061932_SNP [dm6]	C	G	1.897e^-4	0.789	SYNONYMOUS_CODING Cht8 DOWNSTREAM mRpL54	TF binding site mE1_TFBS_HSA
X	20013113	X_20013113_SNP [dm3] X_20119080_SNP [dm6]	C	A	1.898e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10143029	3L_10143029_SNP [dm3] 3L_10149929_SNP [dm6]	T	A	1.901e^-4	0.789	INTRON dpr10
3L	2803765	3L_2803765_SNP [dm3] 3L_2803765_SNP [dm6]	T	C	1.907e^-4	0.789	INTRON CG43444
X	13938056	X_13938056_SNP [dm3] X_14044023_SNP [dm6]	A	T	1.917e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9636345	2R_9636345_SNP [dm3] 2R_13748840_SNP [dm6]	A	C	1.919e^-4	0.789	UTR_3_PRIME fas
X	8019520	X_8019520_SNP [dm3] X_8125487_SNP [dm6]	T	G	1.927e^-4	0.789	INTRON cyr	TF binding site BDTNP1_TFBS_dl
3R	21316957	3R_21316957_DEL [dm3] 3R_25491235_DEL [dm6]	AGTA	A	1.928e^-4	0.789	UPSTREAM CG5112 & 1 other DOWNSTREAM CR44179 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6294431	2R_6294431_SNP [dm3] 2R_10406926_SNP [dm6]	A	T	1.935e^-4	0.789	DOWNSTREAM CG12898 INTRON CG42732
3R	19068158	3R_19068158_SNP [dm3] 3R_23242436_SNP [dm6]	C	T	1.938e^-4	0.789	INTRON CG4467
X	9733762	X_9733762_SNP [dm3] X_9839729_SNP [dm6]	C	G	1.941e^-4	0.789	INTRON CG32698
2L	19320419	2L_19320419_SNP [dm3] 2L_19320419_SNP [dm6]	G	A	1.949e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	10833510	X_10833510_SNP [dm3] X_10939477_SNP [dm6]	T	A	1.958e^-4	0.789	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	753976	X_753976_SNP [dm3] X_859943_SNP [dm6]	C	T	1.967e^-4	0.789	INTRON CG43867
3R	19724195	3R_19724195_SNP [dm3] 3R_23898473_SNP [dm6]	G	A	1.974e^-4	0.789	NON_SYNONYMOUS_CODING sba	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17257160	3L_17257160_SNP [dm3] 3L_17264060_SNP [dm6]	C	A	1.978e^-4	0.789	UPSTREAM CG13723 EXON CR43870
2L	10010511	2L_10010511_SNP [dm3] 2L_10010511_SNP [dm6]	A	G	1.980e^-4	0.789	NON_SYNONYMOUS_CODING Trp1 INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10855844	X_10855844_SNP [dm3] X_10961811_SNP [dm6]	G	A	1.982e^-4	0.789	INTRON Myo10A
2L	3939321	2L_3939321_SNP [dm3] 2L_3939321_SNP [dm6]	T	C	1.982e^-4	0.789	INTRON fred
X	19703873	X_19703873_SNP [dm3] X_19809840_SNP [dm6]	A	T	1.986e^-4	0.789	INTERGENIC
2L	13077358	2L_13077358_SNP [dm3] 2L_13077358_SNP [dm6]	G	A	1.993e^-4	0.789	INTERGENIC
3L	3973659	3L_3973659_SNP [dm3] 3L_3973659_SNP [dm6]	C	T	1.997e^-4	0.789	UTR_3_PRIME CG43915	regulatory region REDfly_CRMs
2R	10685511	2R_10685511_SNP [dm3] 2R_14798006_SNP [dm6]	C	T	2.000e^-4	0.789	UPSTREAM kn INTRON kn
2R	10685513	2R_10685513_SNP [dm3] 2R_14798008_SNP [dm6]	A	T	2.000e^-4	0.789	UPSTREAM kn INTRON kn
3L	9670527	3L_9670527_SNP [dm3] 3L_9677427_SNP [dm6]	G	A	2.006e^-4	0.789	INTRON fry	TF binding site BDTNP1_TFBS_dl
3R	19165018	3R_19165018_SNP [dm3] 3R_23339296_SNP [dm6]	C	A	2.008e^-4	0.789	INTRON pnt
2R	710968	2R_710968_SNP [dm3] 2R_4823463_SNP [dm6]	T	A	2.009e^-4	0.789	INTRON CG17528	TF binding site mE1_TFBS_zfh1
X	14767416	X_14767416_SNP [dm3] X_14873383_SNP [dm6]	T	G	2.010e^-4	0.789	INTRON Flo2
X	2690853	X_2690853_SNP [dm3] X_2796820_SNP [dm6]	C	T	2.011e^-4	0.789	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	11628555	3L_11628555_SNP [dm3] 3L_11635455_SNP [dm6]	C	T	2.012e^-4	0.789	INTRON CG32091
X	7007180	X_7007180_SNP [dm3] X_7113147_SNP [dm6]	C	A	2.014e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6582596	3R_6582596_SNP [dm3] 3R_10756874_SNP [dm6]	A	G	2.020e^-4	0.789	SYNONYMOUS_CODING CG31272 EXON CR45015
X	20056983	X_20056983_DEL [dm3] X_20162950_DEL [dm6]	TT	T	2.021e^-4	0.789	UPSTREAM Phf7 INTRON Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26339446	3R_26339446_SNP [dm3] 3R_30513724_SNP [dm6]	G	C	2.027e^-4	0.789	INTRON CG31524
3L	22126702	3L_22126702_SNP [dm3] 3L_22133602_SNP [dm6]	G	A	2.030e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	385652	2L_385652_SNP [dm3] 2L_385652_SNP [dm6]	T	C	2.033e^-4	0.789	INTRON al
3L	4839102	3L_4839102_SNP [dm3] 3L_4839102_SNP [dm6]	T	C	2.035e^-4	0.789	UTR_5_PRIME CG13707 INTRON CG13707
3L	13373315	3L_13373315_SNP [dm3] 3L_13380215_SNP [dm6]	G	A	2.044e^-4	0.789	SYNONYMOUS_CODING CG14111 DOWNSTREAM CG14107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14641706	2R_14641706_SNP [dm3] 2R_18754201_SNP [dm6]	A	T	2.052e^-4	0.789	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
2R	14270070	2R_14270070_SNP [dm3] 2R_18382565_SNP [dm6]	T	G	2.059e^-4	0.789	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2L	4224140	2L_4224140_SNP [dm3] 2L_4224140_SNP [dm6]	T	C	2.071e^-4	0.789	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18575546	3R_18575546_SNP [dm3] 3R_22749824_SNP [dm6]	T	A	2.087e^-4	0.789	SYNONYMOUS_CODING rumi UPSTREAM CG31139	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
2L	11299383	2L_11299383_SNP [dm3] 2L_11299383_SNP [dm6]	C	T	2.087e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11659328	3L_11659328_SNP [dm3] 3L_11666228_SNP [dm6]	T	C	2.087e^-4	0.789	INTRON CG32085
2L	15282371	2L_15282371_SNP [dm3] 2L_15282371_SNP [dm6]	C	G	2.088e^-4	0.789	INTERGENIC
X	10988509	X_10988509_SNP [dm3] X_11094476_SNP [dm6]	A	G	2.092e^-4	0.789	UTR_3_PRIME CG2061 EXON CR45604
2R	16460414	2R_16460414_SNP [dm3] 2R_20572909_SNP [dm6]	T	A	2.095e^-4	0.789	INTRON qsm
3L	17697118	3L_17697118_SNP [dm3] 3L_17704018_SNP [dm6]	T	G	2.097e^-4	0.789	INTRON Ccn
2R	10820957	2R_10820957_SNP [dm3] 2R_14933452_SNP [dm6]	A	C	2.103e^-4	0.789	UPSTREAM CG12853 & 1 other INTRON CG10253	TF binding site mE1_TFBS_Trl
2R	8467604	2R_8467604_SNP [dm3] 2R_12580099_SNP [dm6]	A	T	2.109e^-4	0.789	INTRON Sin3A
2R	14642274	2R_14642274_SNP [dm3] 2R_18754769_SNP [dm6]	C	G	2.114e^-4	0.789	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
2R	13364227	2R_13364227_SNP [dm3] 2R_17476722_SNP [dm6]	T	A	2.119e^-4	0.789	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	17646341	2R_17646341_SNP [dm3] 2R_21758836_SNP [dm6]	C	T	2.119e^-4	0.789	DOWNSTREAM Grx-1 INTERGENIC
2L	9918542	2L_9918542_SNP [dm3] 2L_9918542_SNP [dm6]	A	T	2.119e^-4	0.789	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10821494	2R_10821494_SNP [dm3] 2R_14933989_SNP [dm6]	G	A	2.121e^-4	0.789	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_Trl
X	975293	X_975293_SNP [dm3] X_1081260_SNP [dm6]	A	T	2.121e^-4	0.789	UTR_5_PRIME CG3655 INTRON CR44779 & 1 other
2L	13791647	2L_13791647_INS [dm3] 2L_13791647_INS [dm6]	A	AT	2.125e^-4	0.789	INTRON CG16863	TF binding site mE1_TFBS_sens
3R	23484828	3R_23484828_SNP [dm3] 3R_27659106_SNP [dm6]	A	G	2.129e^-4	0.789	INTRON Mlc1
3L	16532158	3L_16532158_SNP [dm3] 3L_16539058_SNP [dm6]	C	G	2.133e^-4	0.789	INTRON CG43373
2R	12629254	2R_12629254_SNP [dm3] 2R_16741749_SNP [dm6]	A	T	2.134e^-4	0.789	INTERGENIC
3R	26081361	3R_26081361_SNP [dm3] 3R_30255639_SNP [dm6]	G	T	2.136e^-4	0.789	INTERGENIC
3L	7200507	3L_7200507_SNP [dm3] 3L_7207407_SNP [dm6]	G	A	2.138e^-4	0.789	INTERGENIC
3L	12127137	3L_12127137_SNP [dm3] 3L_12134037_SNP [dm6]	G	C	2.141e^-4	0.789	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2L	8622950	2L_8622950_SNP [dm3] 2L_8622950_SNP [dm6]	A	G	2.143e^-4	0.789	INTRON Sema-1a
3R	25447601	3R_25447601_SNP [dm3] 3R_29621879_SNP [dm6]	T	C	2.148e^-4	0.789	INTERGENIC
3R	21179838	3R_21179838_SNP [dm3] 3R_25354116_SNP [dm6]	T	C	2.149e^-4	0.789	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3370268	X_3370268_SNP [dm3] X_3476235_SNP [dm6]	A	G	2.150e^-4	0.789	DOWNSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2R	14229894	2R_14229894_SNP [dm3] 2R_18342389_SNP [dm6]	T	C	2.161e^-4	0.789	INTRON sbb
3L	11838273	3L_11838273_SNP [dm3] 3L_11845173_SNP [dm6]	T	A	2.165e^-4	0.789	INTERGENIC
3L	13819259	3L_13819259_SNP [dm3] 3L_13826159_SNP [dm6]	A	G	2.170e^-4	0.789	INTERGENIC
3R	26080872	3R_26080872_SNP [dm3] 3R_30255150_SNP [dm6]	C	A	2.171e^-4	0.789	INTERGENIC
2L	2694060	2L_2694060_SNP [dm3] 2L_2694060_SNP [dm6]	T	C	2.174e^-4	0.789	INTRON CG31690
3L	11659331	3L_11659331_SNP [dm3] 3L_11666231_SNP [dm6]	A	T	2.174e^-4	0.789	INTRON CG32085
2R	11921450	2R_11921450_SNP [dm3] 2R_16033945_SNP [dm6]	G	A	2.178e^-4	0.789	INTRON SP2353
2R	18778317	2R_18778317_SNP [dm3] 2R_22890794_SNP [dm6]	G	T	2.178e^-4	0.789	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
X	9583181	X_9583181_SNP [dm3] X_9689148_SNP [dm6]	C	T	2.180e^-4	0.789	EXON CR42657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13893701	3R_13893701_SNP [dm3] 3R_18067979_SNP [dm6]	T	A	2.182e^-4	0.789	INTERGENIC
X	18162462	X_18162462_SNP [dm3] X_18268429_SNP [dm6]	G	A	2.187e^-4	0.789	INTERGENIC
2R	12670791	2R_12670791_INS [dm3] 2R_16783286_INS [dm6]	A	ACATATA	2.188e^-4	0.789	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18930387	2R_18930387_SNP [dm3] 2R_23042864_SNP [dm6]	A	C	2.192e^-4	0.789	START_GAINED CG42741 UTR_5_PRIME CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7686150	2L_7686150_SNP [dm3] 2L_7686150_SNP [dm6]	G	C	2.193e^-4	0.789	NON_SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
3L	12886294	3L_12886294_SNP [dm3] 3L_12893194_SNP [dm6]	G	T	2.202e^-4	0.789	INTRON CG14118
2L	15197747	2L_15197747_SNP [dm3] 2L_15197747_SNP [dm6]	T	C	2.203e^-4	0.789	INTRON CG4168
2R	603199	2R_603199_SNP [dm3] 2R_4715694_SNP [dm6]	A	T	2.208e^-4	0.789	INTRON Nipped-B	transposable element FlyBase
X	7883708	X_7883708_SNP [dm3] X_7989675_SNP [dm6]	T	A	2.218e^-4	0.789	INTERGENIC
2L	5622365	2L_5622365_SNP [dm3] 2L_5622365_SNP [dm6]	A	G	2.220e^-4	0.789	INTRON Cyp6a16
3L	4603487	3L_4603487_SNP [dm3] 3L_4603487_SNP [dm6]	T	C	2.220e^-4	0.789	INTRON Src64B
3L	9247117	3L_9247117_SNP [dm3] 3L_9254017_SNP [dm6]	T	C	2.228e^-4	0.789	INTRON GluRIB
3R	19414922	3R_19414922_SNP [dm3] 3R_23589200_SNP [dm6]	C	T	2.228e^-4	0.789	SYNONYMOUS_CODING CG10182 DOWNSTREAM CG33337
2L	3703873	2L_3703873_SNP [dm3] 2L_3703873_SNP [dm6]	A	G	2.233e^-4	0.789	SYNONYMOUS_CODING CG2816 DOWNSTREAM CR44311 & 1 other
2R	17456107	2R_17456107_SNP [dm3] 2R_21568602_SNP [dm6]	C	T	2.237e^-4	0.789	INTRON CG10440	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22126689	3L_22126689_SNP [dm3] 3L_22133589_SNP [dm6]	A	G	2.241e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20269114	2R_20269114_SNP [dm3] 2R_24381591_SNP [dm6]	C	T	2.251e^-4	0.789	NON_SYNONYMOUS_CODING mAChR-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1354755	3L_1354755_SNP [dm3] 3L_1354755_SNP [dm6]	T	C	2.252e^-4	0.789	INTRON Ptp61F
3L	7056794	3L_7056794_SNP [dm3] 3L_7063694_SNP [dm6]	G	A	2.255e^-4	0.789	INTRON CG8641
2R	17695260	2R_17695260_SNP [dm3] 2R_21807755_SNP [dm6]	T	G	2.256e^-4	0.789	INTERGENIC
2L	7619434	2L_7619434_SNP [dm3] 2L_7619434_SNP [dm6]	C	A	2.259e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	21294037	X_21294037_SNP [dm3] X_21423010_SNP [dm6]	A	T	2.261e^-4	0.789	UTR_3_PRIME CG42343
2L	3222769	2L_3222769_SNP [dm3] 2L_3222769_SNP [dm6]	T	A	2.262e^-4	0.789	INTERGENIC
2R	12629333	2R_12629333_SNP [dm3] 2R_16741828_SNP [dm6]	T	C	2.262e^-4	0.789	INTERGENIC
X	7884495	X_7884495_SNP [dm3] X_7990462_SNP [dm6]	C	A	2.263e^-4	0.789	INTERGENIC
2R	632953	2R_632953_SNP [dm3] 2R_4745448_SNP [dm6]	T	C	2.278e^-4	0.789	INTRON conu
X	2943265	X_2943265_SNP [dm3] X_3049232_SNP [dm6]	G	T	2.281e^-4	0.789	INTRON kirre
2L	3232169	2L_3232169_SNP [dm3] 2L_3232169_SNP [dm6]	G	A	2.282e^-4	0.789	INTERGENIC
2L	9696979	2L_9696979_SNP [dm3] 2L_9696979_SNP [dm6]	T	G	2.283e^-4	0.789	SYNONYMOUS_CODING Pka-C1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14642312	2R_14642312_SNP [dm3] 2R_18754807_SNP [dm6]	C	T	2.284e^-4	0.789	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
3L	4838936	3L_4838936_SNP [dm3] 3L_4838936_SNP [dm6]	C	T	2.284e^-4	0.789	UTR_5_PRIME CG13707 INTRON CG13707
2R	19521244	2R_19521244_SNP [dm3] 2R_23633721_SNP [dm6]	T	G	2.287e^-4	0.789	INTRON retn
2R	17454987	2R_17454987_SNP [dm3] 2R_21567482_SNP [dm6]	G	A	2.288e^-4	0.789	INTRON CG10440
3R	23990158	3R_23990158_SNP [dm3] 3R_28164436_SNP [dm6]	A	G	2.292e^-4	0.789	INTRON CG34354
X	11339936	X_11339936_SNP [dm3] X_11445903_SNP [dm6]	G	T	2.301e^-4	0.789	UTR_3_PRIME Sk1 INTRON Evi5
2L	2420375	2L_2420375_SNP [dm3] 2L_2420375_SNP [dm6]	A	T	2.308e^-4	0.789	UPSTREAM CG34447 & 1 other INTERGENIC
2L	2046362	2L_2046362_SNP [dm3] 2L_2046362_SNP [dm6]	T	C	2.310e^-4	0.789	UPSTREAM CR45298 INTRON Kebab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20056734	X_20056734_SNP [dm3] X_20162701_SNP [dm6]	C	A	2.319e^-4	0.789	UTR_5_PRIME Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20056846	X_20056846_SNP [dm3] X_20162813_SNP [dm6]	G	C	2.319e^-4	0.789	UTR_5_PRIME Phf7 UPSTREAM Phf7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	16700327	X_16700327_SNP [dm3] X_16806294_SNP [dm6]	G	A	2.325e^-4	0.789	UTR_5_PRIME ppk28 DOWNSTREAM CG13005 EXON CR44053
X	21292825	X_21292825_SNP [dm3] X_21421798_SNP [dm6]	C	A	2.330e^-4	0.789	DOWNSTREAM CG42343 INTERGENIC	TF binding site mE1_TFBS_cnc transposable element FlyBase
3L	11003247	3L_11003247_SNP [dm3] 3L_11010147_SNP [dm6]	C	T	2.337e^-4	0.789	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	8502842	X_8502842_SNP [dm3] X_8608809_SNP [dm6]	C	G	2.341e^-4	0.789	INTERGENIC
3L	9432779	3L_9432779_SNP [dm3] 3L_9439679_SNP [dm6]	C	A	2.346e^-4	0.789	DOWNSTREAM MTF-1 & 1 other INTRON Bet3
3L	3842089	3L_3842089_DEL [dm3] 3L_3842089_DEL [dm6]	TAT	T	2.354e^-4	0.789	UTR_3_PRIME enc DOWNSTREAM enc
3R	15314848	3R_15314848_SNP [dm3] 3R_19489126_SNP [dm6]	A	G	2.357e^-4	0.789	DOWNSTREAM CG15025 INTRON Dys
3L	9303851	3L_9303851_DEL [dm3] 3L_9310751_DEL [dm6]	TT	T	2.361e^-4	0.789	INTERGENIC
2L	15282367	2L_15282367_SNP [dm3] 2L_15282367_SNP [dm6]	C	A	2.363e^-4	0.789	INTERGENIC
X	18154117	X_18154117_SNP [dm3] X_18260084_SNP [dm6]	T	C	2.371e^-4	0.789	UPSTREAM CG15059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12228757	3L_12228757_INS [dm3] 3L_12235657_INS [dm6]	G	GTTGCTG	2.374e^-4	0.789	INTRON app
X	8019507	X_8019507_SNP [dm3] X_8125474_SNP [dm6]	A	G	2.376e^-4	0.789	INTRON cyr	TF binding site BDTNP1_TFBS_dl
3L	13912214	3L_13912214_SNP [dm3] 3L_13919114_SNP [dm6]	G	A	2.379e^-4	0.789	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	473509	3L_473509_INS [dm3] 3L_473509_INS [dm6]	C	CTTTTC	2.383e^-4	0.789	INTRON klar
3R	19324782	3R_19324782_SNP [dm3] 3R_23499060_SNP [dm6]	T	C	2.391e^-4	0.789	INTERGENIC
3L	11605928	3L_11605928_SNP [dm3] 3L_11612828_SNP [dm6]	C	T	2.392e^-4	0.789	SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_sens
2R	14642273	2R_14642273_SNP [dm3] 2R_18754768_SNP [dm6]	A	G	2.392e^-4	0.789	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
2L	18289018	2L_18289018_SNP [dm3] 2L_18289018_SNP [dm6]	A	G	2.405e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	16114687	2R_16114687_SNP [dm3] 2R_20227182_SNP [dm6]	A	G	2.406e^-4	0.789	INTERGENIC
2R	3504678	2R_3504678_SNP [dm3] 2R_7617173_SNP [dm6]	C	A	2.409e^-4	0.789	INTRON CG1358
2L	22297197	2L_22297197_SNP [dm3] 2L_22297197_SNP [dm6]	G	A	2.410e^-4	0.789	INTERGENIC	transposable element FlyBase
2R	776023	2R_776023_SNP [dm3] 2R_4888518_SNP [dm6]	G	C	2.410e^-4	0.789	INTERGENIC
3L	2351752	3L_2351752_SNP [dm3] 3L_2351752_SNP [dm6]	A	G	2.416e^-4	0.789	INTERGENIC
2R	14752167	2R_14752167_SNP [dm3] 2R_18864662_SNP [dm6]	T	C	2.416e^-4	0.789	UTR_3_PRIME CG43071 DOWNSTREAM CG43071 & 1 other
3L	17443844	3L_17443844_SNP [dm3] 3L_17450744_SNP [dm6]	C	G	2.417e^-4	0.789	NON_SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10723776	2L_10723776_SNP [dm3] 2L_10723776_SNP [dm6]	A	T	2.421e^-4	0.789	UPSTREAM CG6431 INTERGENIC
3L	11659332	3L_11659332_SNP [dm3] 3L_11666232_SNP [dm6]	T	G	2.428e^-4	0.789	INTRON CG32085
X	9457516	X_9457516_SNP [dm3] X_9563483_SNP [dm6]	A	G	2.436e^-4	0.789	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8331177	2L_8331177_SNP [dm3] 2L_8331177_SNP [dm6]	G	A	2.441e^-4	0.789	INTRON CG14275
3R	19432879	3R_19432879_SNP [dm3] 3R_23607157_SNP [dm6]	G	A	2.448e^-4	0.789	DOWNSTREAM CG31145 INTRON CG31145
3L	13183616	3L_13183616_SNP [dm3] 3L_13190516_SNP [dm6]	T	C	2.449e^-4	0.789	INTERGENIC
2R	666954	2R_666954_SNP [dm3] 2R_4779449_SNP [dm6]	A	T	2.455e^-4	0.789	DOWNSTREAM CR43281 INTERGENIC	transposable element FlyBase
2L	4185859	2L_4185859_SNP [dm3] 2L_4185859_SNP [dm6]	T	A	2.461e^-4	0.789	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
2R	15070797	2R_15070797_SNP [dm3] 2R_19183292_SNP [dm6]	C	A	2.467e^-4	0.789	INTRON hppy
3L	11003262	3L_11003262_SNP [dm3] 3L_11010162_SNP [dm6]	A	G	2.468e^-4	0.789	UPSTREAM klu INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22852891	3R_22852891_SNP [dm3] 3R_27027169_SNP [dm6]	C	T	2.470e^-4	0.789	INTRON RYa-R
3L	12565167	3L_12565167_SNP [dm3] 3L_12572067_SNP [dm6]	C	A	2.470e^-4	0.789	SYNONYMOUS_CODING sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15445985	3L_15445985_INS [dm3] 3L_15452885_INS [dm6]	A	ACATA	2.474e^-4	0.789	INTERGENIC
2R	15989705	2R_15989705_SNP [dm3] 2R_20102200_SNP [dm6]	C	T	2.475e^-4	0.789	INTERGENIC
X	7988900	X_7988900_SNP [dm3] X_8094867_SNP [dm6]	T	C	2.475e^-4	0.789	UTR_3_PRIME CG2258 UPSTREAM Ubc-E2H
X	5617943	X_5617943_INS [dm3] X_5723910_INS [dm6]	A	AA	2.477e^-4	0.789	UPSTREAM CG32758 INTRON CG32758	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15699625	3L_15699625_SNP [dm3] 3L_15706525_SNP [dm6]	G	T	2.481e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11659336	3L_11659336_SNP [dm3] 3L_11666236_SNP [dm6]	C	G	2.489e^-4	0.789	INTRON CG32085
2R	17646347	2R_17646347_SNP [dm3] 2R_21758842_SNP [dm6]	A	G	2.491e^-4	0.789	DOWNSTREAM Grx-1 INTERGENIC
X	15874652	X_15874652_SNP [dm3] X_15980619_SNP [dm6]	A	G	2.495e^-4	0.789	SYNONYMOUS_CODING CG9170	TF binding site mE1_TFBS_cad
X	18871397	X_18871397_SNP [dm3] X_18977364_SNP [dm6]	T	A	2.507e^-4	0.789	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11305647	2L_11305647_SNP [dm3] 2L_11305647_SNP [dm6]	G	A	2.508e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11305648	2L_11305648_SNP [dm3] 2L_11305648_SNP [dm6]	T	C	2.508e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16052621	2L_16052621_SNP [dm3] 2L_16052621_SNP [dm6]	A	C	2.511e^-4	0.789	INTRON beat-Ia
2R	16175792	2R_16175792_SNP [dm3] 2R_20288287_SNP [dm6]	T	A	2.512e^-4	0.789	UTR_3_PRIME CG34199 DOWNSTREAM Cpr56F
2R	9439340	2R_9439340_SNP [dm3] 2R_13551835_SNP [dm6]	G	T	2.524e^-4	0.789	UPSTREAM CG33156 INTRON CG33156
2R	12644200	2R_12644200_SNP [dm3] 2R_16756695_SNP [dm6]	A	T	2.530e^-4	0.789	SYNONYMOUS_CODING unc-104 DOWNSTREAM CG5267	TF binding site BDTNP1_TFBS_sna
X	5062992	X_5062992_SNP [dm3] X_5168959_SNP [dm6]	T	C	2.542e^-4	0.789	INTRON rg & 1 other
X	20538152	X_20538152_SNP [dm3] X_20667125_SNP [dm6]	T	C	2.543e^-4	0.789	INTRON CG1835
X	20013118	X_20013118_SNP [dm3] X_20119085_SNP [dm6]	G	A	2.544e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14926045	3L_14926045_SNP [dm3] 3L_14932945_SNP [dm6]	G	C	2.548e^-4	0.789	INTRON DCX-EMAP
2L	9918583	2L_9918583_SNP [dm3] 2L_9918583_SNP [dm6]	T	A	2.552e^-4	0.789	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11388939	2L_11388939_SNP [dm3] 2L_11388939_SNP [dm6]	C	T	2.563e^-4	0.789	EXON CR43681	regulatory region REDfly_CRMs
2R	13669741	2R_13669741_SNP [dm3] 2R_17782236_SNP [dm6]	T	A	2.564e^-4	0.789	UPSTREAM fab1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9808159	2L_9808159_SNP [dm3] 2L_9808159_SNP [dm6]	A	G	2.577e^-4	0.789	INTRON nAChRalpha6
X	21945181	X_21945181_SNP [dm3] X_22543345_SNP [dm6]	C	T	2.581e^-4	0.789	SYNONYMOUS_CODING CG17599
2L	17214377	2L_17214377_SNP [dm3] 2L_17214377_SNP [dm6]	C	T	2.586e^-4	0.789	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15304430	2L_15304430_SNP [dm3] 2L_15304430_SNP [dm6]	T	C	2.587e^-4	0.789	INTERGENIC
2L	3635567	2L_3635567_SNP [dm3] 2L_3635567_SNP [dm6]	A	G	2.589e^-4	0.789	INTRON for
2L	19239501	2L_19239501_SNP [dm3] 2L_19239501_SNP [dm6]	C	A	2.599e^-4	0.789	INTERGENIC
2L	7688698	2L_7688698_SNP [dm3] 2L_7688698_SNP [dm6]	C	T	2.609e^-4	0.789	SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
2L	7660346	2L_7660346_SNP [dm3] 2L_7660346_SNP [dm6]	A	T	2.614e^-4	0.789	UPSTREAM Slob INTRON Slob
3R	24938247	3R_24938247_SNP [dm3] 3R_29112525_SNP [dm6]	A	G	2.614e^-4	0.789	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
2R	3591227	2R_3591227_SNP [dm3] 2R_7703722_SNP [dm6]	A	T	2.621e^-4	0.789	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
2R	774798	2R_774798_SNP [dm3] 2R_4887293_SNP [dm6]	T	A	2.624e^-4	0.789	INTERGENIC
3L	1699420	3L_1699420_SNP [dm3] 3L_1699420_SNP [dm6]	C	T	2.642e^-4	0.789	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	19784658	X_19784658_SNP [dm3] X_19890625_SNP [dm6]	A	C	2.645e^-4	0.789	UPSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	18162701	X_18162701_SNP [dm3] X_18268668_SNP [dm6]	T	A	2.651e^-4	0.789	INTERGENIC
X	9727905	X_9727905_SNP [dm3] X_9833872_SNP [dm6]	A	G	2.651e^-4	0.789	INTRON CG32698
3L	11430112	3L_11430112_SNP [dm3] 3L_11437012_SNP [dm6]	A	G	2.656e^-4	0.789	DOWNSTREAM CR44548 INTERGENIC
2R	641732	2R_641732_SNP [dm3] 2R_4754227_SNP [dm6]	A	T	2.657e^-4	0.789	INTRON conu
2R	14270090	2R_14270090_SNP [dm3] 2R_18382585_SNP [dm6]	T	C	2.658e^-4	0.789	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2L	8967641	2L_8967641_SNP [dm3] 2L_8967641_SNP [dm6]	G	A	2.661e^-4	0.789	SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
3L	12178431	3L_12178431_DEL [dm3] 3L_12185331_DEL [dm6]	GCATCCC	G	2.666e^-4	0.789	UPSTREAM CG6910 INTRON CG6910
3L	22212537	3L_22212537_SNP [dm3] 3L_22219437_SNP [dm6]	G	T	2.667e^-4	0.789	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	753967	X_753967_SNP [dm3] X_859934_SNP [dm6]	T	C	2.668e^-4	0.789	INTRON CG43867
3L	21598994	3L_21598994_SNP [dm3] 3L_21605894_SNP [dm6]	A	G	2.670e^-4	0.789	INTRON TfAP-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16480043	2L_16480043_SNP [dm3] 2L_16480043_SNP [dm6]	A	G	2.671e^-4	0.789	INTRON dac
3R	19245509	3R_19245509_INS [dm3] 3R_23419787_INS [dm6]	A	ACAGCA	2.674e^-4	0.789	INTRON CG4374
2L	13268231	2L_13268231_SNP [dm3] 2L_13268231_SNP [dm6]	C	T	2.674e^-4	0.789	INTRON CG44085
2R	14752151	2R_14752151_SNP [dm3] 2R_18864646_SNP [dm6]	A	G	2.678e^-4	0.789	UTR_3_PRIME CG43071 DOWNSTREAM CG43071 & 1 other
3L	7960119	3L_7960119_SNP [dm3] 3L_7967019_SNP [dm6]	A	T	2.686e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26956763	3R_26956763_SNP [dm3] 3R_31131041_SNP [dm6]	G	T	2.695e^-4	0.789	UPSTREAM CG15556 INTERGENIC
X	7884860	X_7884860_SNP [dm3] X_7990827_SNP [dm6]	C	A	2.696e^-4	0.789	INTERGENIC
2L	17212144	2L_17212144_SNP [dm3] 2L_17212144_SNP [dm6]	T	A	2.706e^-4	0.789	INTRON beat-IIIc
4	747864	4_747864_INS [dm3] 4_727238_INS [dm6]	C	CTTTC	2.725e^-4	0.789	INTRON bt
2R	16750644	2R_16750644_SNP [dm3] 2R_20863139_SNP [dm6]	C	A	2.732e^-4	0.789	UPSTREAM CG15227 INTERGENIC
3R	19430477	3R_19430477_DEL [dm3] 3R_23604755_DEL [dm6]	TAA	T	2.733e^-4	0.789	DOWNSTREAM CG31145 INTRON CG10184	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11336730	3L_11336730_SNP [dm3] 3L_11343630_SNP [dm6]	T	C	2.734e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
3L	8604897	3L_8604897_DEL [dm3] 3L_8611797_DEL [dm6]	AGATCCTCTTA...	A	2.736e^-4	0.789	INTRON CG6282
2R	16099233	2R_16099233_SNP [dm3] 2R_20211728_SNP [dm6]	A	C	2.741e^-4	0.789	SYNONYMOUS_CODING CG16894
2R	6060440	2R_6060440_SNP [dm3] 2R_10172935_SNP [dm6]	G	T	2.743e^-4	0.789	INTRON KCNQ
3L	11336482	3L_11336482_INS [dm3] 3L_11343382_INS [dm6]	C	CA	2.744e^-4	0.789	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	7924428	3R_7924428_SNP [dm3] 3R_12098706_SNP [dm6]	A	C	2.745e^-4	0.789	INTRON dpr17
3R	15653288	3R_15653288_SNP [dm3] 3R_19827566_SNP [dm6]	G	A	2.752e^-4	0.789	INTRON bnl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	19795868	X_19795868_SNP [dm3] X_19901835_SNP [dm6]	G	A	2.759e^-4	0.789	INTRON Hers	TF binding site mE1_TFBS_cad
2R	625707	2R_625707_SNP [dm3] 2R_4738202_SNP [dm6]	G	A	2.763e^-4	0.789	INTERGENIC	transposable element FlyBase
X	5944574	X_5944574_SNP [dm3] X_6050541_SNP [dm6]	A	G	2.777e^-4	0.789	UPSTREAM CG5921 DOWNSTREAM CG5937 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6571582	3L_6571582_SNP [dm3] 3L_6578482_SNP [dm6]	A	C	2.779e^-4	0.789	INTRON CG18769 & 1 other
X	7851867	X_7851867_SNP [dm3] X_7957834_SNP [dm6]	G	C	2.786e^-4	0.789	INTRON sws
3L	5349098	3L_5349098_SNP [dm3] 3L_5355998_SNP [dm6]	G	C	2.788e^-4	0.789	UPSTREAM tRNA:CR32420 & 1 other DOWNSTREAM tRNA:CR32421 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12088603	X_12088603_SNP [dm3] X_12194570_SNP [dm6]	G	A	2.789e^-4	0.789	INTRON Ten-a
X	12588122	X_12588122_SNP [dm3] X_12694089_SNP [dm6]	G	T	2.796e^-4	0.789	INTRON Smr	TF binding site mE1_TFBS_inv
2R	17647635	2R_17647635_INS [dm3] 2R_21760130_INS [dm6]	C	CC	2.800e^-4	0.789	INTERGENIC
2R	9505695	2R_9505695_SNP [dm3] 2R_13618190_SNP [dm6]	A	T	2.803e^-4	0.789	INTERGENIC
2R	717837	2R_717837_SNP [dm3] 2R_4830332_SNP [dm6]	G	A	2.811e^-4	0.789	UTR_3_PRIME CG14464 DOWNSTREAM CG14464
2R	18227109	2R_18227109_SNP [dm3] 2R_22339604_SNP [dm6]	C	T	2.811e^-4	0.789	SYNONYMOUS_CODING Liprin-gamma	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11322351	2L_11322351_SNP [dm3] 2L_11322351_SNP [dm6]	A	G	2.811e^-4	0.789	INTERGENIC
2R	12393434	2R_12393434_SNP [dm3] 2R_16505929_SNP [dm6]	T	C	2.812e^-4	0.789	INTRON Sema-2a
2R	13595996	2R_13595996_SNP [dm3] 2R_17708491_SNP [dm6]	C	T	2.813e^-4	0.789	INTRON CG6424
3R	16145866	3R_16145866_SNP [dm3] 3R_20320144_SNP [dm6]	A	T	2.816e^-4	0.789	INTRON CG42668
2L	3703819	2L_3703819_SNP [dm3] 2L_3703819_SNP [dm6]	A	G	2.819e^-4	0.789	DOWNSTREAM CR44311 & 1 other INTRON CG2816
2L	12604967	2L_12604967_SNP [dm3] 2L_12604967_SNP [dm6]	T	C	2.825e^-4	0.789	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3363483	2R_3363483_SNP [dm3] 2R_7475978_SNP [dm6]	A	C	2.833e^-4	0.789	INTRON Aldh-III
3L	14390146	3L_14390146_SNP [dm3] 3L_14397046_SNP [dm6]	A	T	2.834e^-4	0.789	INTERGENIC
2L	7686140	2L_7686140_SNP [dm3] 2L_7686140_SNP [dm6]	G	A	2.838e^-4	0.789	SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
2L	7686143	2L_7686143_SNP [dm3] 2L_7686143_SNP [dm6]	C	T	2.838e^-4	0.789	SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
X	14767553	X_14767553_SNP [dm3] X_14873520_SNP [dm6]	G	A	2.853e^-4	0.789	INTRON Flo2
2L	13041175	2L_13041175_MNP [dm3] 2L_13041175_MNP [dm6]	CGA	GTG	2.869e^-4	0.789	INTRON CG9932
2R	14756694	2R_14756694_SNP [dm3] 2R_18869189_SNP [dm6]	A	G	2.878e^-4	0.789	INTERGENIC
3R	26484390	3R_26484390_SNP [dm3] 3R_30658668_SNP [dm6]	T	A	2.881e^-4	0.789	INTERGENIC
2L	7781627	2L_7781627_SNP [dm3] 2L_7781627_SNP [dm6]	G	A	2.886e^-4	0.789	UTR_5_PRIME CG7164 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad
3L	11659345	3L_11659345_SNP [dm3] 3L_11666245_SNP [dm6]	T	A	2.899e^-4	0.789	INTRON CG32085
3L	6567356	3L_6567356_SNP [dm3] 3L_6574256_SNP [dm6]	T	C	2.908e^-4	0.789	INTRON CG18769 & 1 other
3L	7201259	3L_7201259_SNP [dm3] 3L_7208159_SNP [dm6]	G	C	2.911e^-4	0.789	INTERGENIC
3L	11430103	3L_11430103_SNP [dm3] 3L_11437003_SNP [dm6]	A	G	2.919e^-4	0.789	DOWNSTREAM CR44548 INTERGENIC
X	4566827	X_4566827_SNP [dm3] X_4672794_SNP [dm6]	G	A	2.922e^-4	0.789	INTRON rap	TF binding site BDTNP1_TFBS_twi
3R	25418820	3R_25418820_DEL [dm3] 3R_29593098_DEL [dm6]	TATT	T	2.940e^-4	0.789	UTR_5_PRIME alph UPSTREAM alph INTRON alph	TF binding site mE1_TFBS_cad
3L	2804733	3L_2804733_SNP [dm3] 3L_2804733_SNP [dm6]	T	C	2.940e^-4	0.789	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10735951	2R_10735951_SNP [dm3] 2R_14848446_SNP [dm6]	C	A	2.942e^-4	0.789	UPSTREAM CG10209 DOWNSTREAM SMC2 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11659338	3L_11659338_MNP [dm3] 3L_11666238_MNP [dm6]	TAT	ACC	2.946e^-4	0.789	INTRON CG32085
X	19412248	X_19412248_SNP [dm3] X_19518215_SNP [dm6]	A	G	2.950e^-4	0.789	UTR_3_PRIME CG14200 DOWNSTREAM l_1_G0156
X	8897199	X_8897199_SNP [dm3] X_9003166_SNP [dm6]	C	G	2.950e^-4	0.789	INTRON rdgA & 1 other
2L	11301493	2L_11301493_SNP [dm3] 2L_11301493_SNP [dm6]	T	A	2.952e^-4	0.789	INTERGENIC
3R	5751469	3R_5751469_SNP [dm3] 3R_9925747_SNP [dm6]	C	A	2.956e^-4	0.789	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	20289704	X_20289704_SNP [dm3] X_20418677_SNP [dm6]	G	T	2.957e^-4	0.789	NON_SYNONYMOUS_CODING Obp19c UPSTREAM Obp19d DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12124414	2R_12124414_SNP [dm3] 2R_16236909_SNP [dm6]	T	A	2.958e^-4	0.789	SYNONYMOUS_CODING CG3687
2L	7688695	2L_7688695_SNP [dm3] 2L_7688695_SNP [dm6]	G	C	2.967e^-4	0.789	NON_SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
X	7888700	X_7888700_SNP [dm3] X_7994667_SNP [dm6]	G	T	2.969e^-4	0.789	INTERGENIC
2R	16099234	2R_16099234_SNP [dm3] 2R_20211729_SNP [dm6]	C	A	2.979e^-4	0.789	NON_SYNONYMOUS_CODING CG16894
3R	22859924	3R_22859924_SNP [dm3] 3R_27034202_SNP [dm6]	T	G	2.980e^-4	0.789	INTRON RYa-R	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19430642	3R_19430642_SNP [dm3] 3R_23604920_SNP [dm6]	A	G	2.995e^-4	0.789	SYNONYMOUS_CODING CG10184 DOWNSTREAM CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18161396	X_18161396_SNP [dm3] X_18267363_SNP [dm6]	A	G	2.999e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12085045	3L_12085045_SNP [dm3] 3L_12091945_SNP [dm6]	G	C	2.999e^-4	0.789	INTERGENIC
3L	8642610	3L_8642610_SNP [dm3] 3L_8649510_SNP [dm6]	C	T	2.999e^-4	0.789	UTR_5_PRIME Pex7 UPSTREAM Arr2 INTRON Pex7	TF binding site mE1_TFBS_cad
X	20884110	X_20884110_SNP [dm3] X_21013083_SNP [dm6]	A	T	3.000e^-4	0.789	INTERGENIC
3L	5671296	3L_5671296_SNP [dm3] 3L_5678196_SNP [dm6]	T	A	3.006e^-4	0.789	UPSTREAM sif INTRON sif
2L	13611429	2L_13611429_SNP [dm3] 2L_13611429_SNP [dm6]	G	A	3.017e^-4	0.789	INTRON kuz
X	9453987	X_9453987_SNP [dm3] X_9559954_SNP [dm6]	A	G	3.020e^-4	0.789	SYNONYMOUS_CODING Cubn
2R	14751326	2R_14751326_SNP [dm3] 2R_18863821_SNP [dm6]	T	C	3.021e^-4	0.789	UPSTREAM CG43070 DOWNSTREAM CG43069 & 1 other INTERGENIC
2R	5263252	2R_5263252_SNP [dm3] 2R_9375747_SNP [dm6]	G	A	3.025e^-4	0.789	INTRON CG13954
3L	7920461	3L_7920461_SNP [dm3] 3L_7927361_SNP [dm6]	A	G	3.027e^-4	0.789	INTRON syd
2R	5133046	2R_5133046_DEL [dm3] 2R_9245541_DEL [dm6]	ATGGCGA	A	3.035e^-4	0.789	INTRON hig
2R	19863246	2R_19863246_SNP [dm3] 2R_23975723_SNP [dm6]	T	A	3.035e^-4	0.789	UTR_3_PRIME Gadd34 DOWNSTREAM mr
X	17899190	X_17899190_SNP [dm3] X_18005157_SNP [dm6]	T	A	3.036e^-4	0.789	DOWNSTREAM CG12672 INTRON Sh
3L	19016289	3L_19016289_SNP [dm3] 3L_19023189_SNP [dm6]	G	T	3.040e^-4	0.789	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	4248042	2R_4248042_SNP [dm3] 2R_8360537_SNP [dm6]	G	T	3.055e^-4	0.789	NON_SYNONYMOUS_CODING spaw UTR_3_PRIME hubl DOWNSTREAM hubl INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18061304	X_18061304_SNP [dm3] X_18167271_SNP [dm6]	A	G	3.056e^-4	0.789	INTRON Frq1
3R	18725265	3R_18725265_SNP [dm3] 3R_22899543_SNP [dm6]	A	C	3.060e^-4	0.789	UTR_5_PRIME klg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20816711	X_20816711_DEL [dm3] X_20945684_DEL [dm6]	GATACACAT	A	3.070e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12084920	3L_12084920_SNP [dm3] 3L_12091820_SNP [dm6]	G	A	3.075e^-4	0.789	INTERGENIC
X	19954320	X_19954320_INS [dm3] X_20060287_INS [dm6]	C	CTC	3.078e^-4	0.789	INTRON Dop2R
X	19954326	X_19954326_SNP [dm3] X_20060293_SNP [dm6]	G	C	3.078e^-4	0.789	INTRON Dop2R
2R	14643769	2R_14643769_SNP [dm3] 2R_18756264_SNP [dm6]	G	A	3.081e^-4	0.789	NON_SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Jabba
2R	692538	2R_692538_INS [dm3] 2R_4805033_INS [dm6]	T	TATTT	3.085e^-4	0.789	INTERGENIC
3L	12173510	3L_12173510_SNP [dm3] 3L_12180410_SNP [dm6]	C	T	3.089e^-4	0.789	INTRON CAH2
X	7568777	X_7568777_SNP [dm3] X_7674744_SNP [dm6]	A	G	3.090e^-4	0.789	UTR_3_PRIME ct
X	20819266	X_20819266_SNP [dm3] X_20948239_SNP [dm6]	C	G	3.097e^-4	0.789	INTERGENIC
3L	1909641	3L_1909641_SNP [dm3] 3L_1909641_SNP [dm6]	A	T	3.102e^-4	0.789	INTRON CG1887
2R	12625414	2R_12625414_SNP [dm3] 2R_16737909_SNP [dm6]	C	T	3.120e^-4	0.789	UPSTREAM CR44464 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12672009	2R_12672009_SNP [dm3] 2R_16784504_SNP [dm6]	C	A	3.129e^-4	0.789	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	11305492	2L_11305492_SNP [dm3] 2L_11305492_SNP [dm6]	C	T	3.129e^-4	0.789	INTERGENIC
2L	5332568	2L_5332568_SNP [dm3] 2L_5332568_SNP [dm6]	C	T	3.131e^-4	0.789	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15282357	2L_15282357_SNP [dm3] 2L_15282357_SNP [dm6]	A	G	3.132e^-4	0.789	INTERGENIC
3R	9877618	3R_9877618_SNP [dm3] 3R_14051896_SNP [dm6]	C	T	3.138e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18607526	3L_18607526_SNP [dm3] 3L_18614426_SNP [dm6]	C	A	3.139e^-4	0.789	DOWNSTREAM CG32199 INTRON CG4174 & 1 other
X	20057121	X_20057121_SNP [dm3] X_20163088_SNP [dm6]	T	C	3.142e^-4	0.789	UPSTREAM Phf7 INTRON Phf7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	14753871	2R_14753871_SNP [dm3] 2R_18866366_SNP [dm6]	G	C	3.146e^-4	0.789	DOWNSTREAM Dpt INTERGENIC
2R	14756029	2R_14756029_SNP [dm3] 2R_18868524_SNP [dm6]	T	C	3.146e^-4	0.789	UPSTREAM CG43109 DOWNSTREAM DptB INTERGENIC
X	6093858	X_6093858_SNP [dm3] X_6199825_SNP [dm6]	G	A	3.149e^-4	0.789	NON_SYNONYMOUS_CODING CG43090 DOWNSTREAM vanin-like
3L	15445547	3L_15445547_SNP [dm3] 3L_15452447_SNP [dm6]	G	A	3.151e^-4	0.789	INTERGENIC
3R	16606068	3R_16606068_SNP [dm3] 3R_20780346_SNP [dm6]	G	C	3.151e^-4	0.789	UTR_5_PRIME Syp INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19129338	2L_19129338_SNP [dm3] 2L_19129338_SNP [dm6]	A	G	3.151e^-4	0.789	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	11659348	3L_11659348_MNP [dm3] 3L_11666248_MNP [dm6]	TCT	ATG	3.154e^-4	0.789	INTRON CG32085
X	4385497	X_4385497_SNP [dm3] X_4491464_SNP [dm6]	G	T	3.155e^-4	0.789	INTRON CR32773	TF binding site BDTNP1_TFBS_prd
2R	16173290	2R_16173290_SNP [dm3] 2R_20285785_SNP [dm6]	T	C	3.163e^-4	0.789	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27080532	3R_27080532_SNP [dm3] 3R_31254810_SNP [dm6]	C	T	3.171e^-4	0.789	SYNONYMOUS_CODING CG1750 UPSTREAM spn-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14752156	2R_14752156_SNP [dm3] 2R_18864651_SNP [dm6]	G	T	3.174e^-4	0.789	UTR_3_PRIME CG43071 DOWNSTREAM CG43071 & 1 other
2R	8564566	2R_8564566_SNP [dm3] 2R_12677061_SNP [dm6]	G	A	3.174e^-4	0.789	UPSTREAM CG42708 INTRON CG42708
3L	5186976	3L_5186976_SNP [dm3] 3L_5193876_SNP [dm6]	A	T	3.175e^-4	0.789	INTRON shep
X	13144931	X_13144931_SNP [dm3] X_13250898_SNP [dm6]	G	A	3.175e^-4	0.789	INTRON mew	TF binding site BDTNP1_TFBS_twi
3L	913020	3L_913020_SNP [dm3] 3L_913020_SNP [dm6]	C	T	3.177e^-4	0.789	DOWNSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12670705	2R_12670705_SNP [dm3] 2R_16783200_SNP [dm6]	A	T	3.178e^-4	0.789	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9730716	X_9730716_SNP [dm3] X_9836683_SNP [dm6]	A	G	3.198e^-4	0.789	SYNONYMOUS_CODING CG32698
X	6061588	X_6061588_SNP [dm3] X_6167555_SNP [dm6]	T	A	3.200e^-4	0.789	INTRON Ca-alpha1T
2L	19088443	2L_19088443_SNP [dm3] 2L_19088443_SNP [dm6]	C	T	3.202e^-4	0.789	INTRON Lim3
2R	16013041	2R_16013041_SNP [dm3] 2R_20125536_SNP [dm6]	A	G	3.204e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12178439	3L_12178439_INS [dm3] 3L_12185339_INS [dm6]	T	TTAAT	3.204e^-4	0.789	UPSTREAM CG6910 INTRON CG6910
2L	7591366	2L_7591366_SNP [dm3] 2L_7591366_SNP [dm6]	G	A	3.205e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7591383	2L_7591383_SNP [dm3] 2L_7591383_SNP [dm6]	A	C	3.205e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17212027	2L_17212027_SNP [dm3] 2L_17212027_SNP [dm6]	T	C	3.208e^-4	0.789	INTRON beat-IIIc
X	8517636	X_8517636_SNP [dm3] X_8623603_SNP [dm6]	G	C	3.209e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9678204	3L_9678204_SNP [dm3] 3L_9685104_SNP [dm6]	G	T	3.216e^-4	0.789	UPSTREAM CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad
3R	22813708	3R_22813708_SNP [dm3] 3R_26987986_SNP [dm6]	T	C	3.225e^-4	0.789	UPSTREAM CG31075 INTRON CG31075
2R	15213287	2R_15213287_SNP [dm3] 2R_19325782_SNP [dm6]	C	A	3.231e^-4	0.789	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11495081	2R_11495081_SNP [dm3] 2R_15607576_SNP [dm6]	G	A	3.232e^-4	0.789	INTERGENIC
3R	20371450	3R_20371450_SNP [dm3] 3R_24545728_SNP [dm6]	G	A	3.234e^-4	0.789	INTRON Esyt2	TF binding site mE1_TFBS_bab1
3L	12390993	3L_12390993_SNP [dm3] 3L_12397893_SNP [dm6]	T	C	3.236e^-4	0.789	SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20057085	X_20057085_SNP [dm3] X_20163052_SNP [dm6]	A	T	3.236e^-4	0.789	UPSTREAM Phf7 INTRON Phf7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	18652020	2L_18652020_SNP [dm3] 2L_18652020_SNP [dm6]	G	T	3.240e^-4	0.789	INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4284942	2L_4284942_DEL [dm3] 2L_4284942_DEL [dm6]	AA	A	3.241e^-4	0.789	UTR_5_PRIME tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17892750	X_17892750_SNP [dm3] X_17998717_SNP [dm6]	G	C	3.252e^-4	0.789	INTRON Sh
3L	11153475	3L_11153475_SNP [dm3] 3L_11160375_SNP [dm6]	T	G	3.253e^-4	0.789	SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13912129	3L_13912129_SNP [dm3] 3L_13919029_SNP [dm6]	T	A	3.256e^-4	0.789	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6100452	X_6100452_SNP [dm3] X_6206419_SNP [dm6]	T	C	3.261e^-4	0.789	INTERGENIC
X	20289537	X_20289537_SNP [dm3] X_20418510_SNP [dm6]	T	C	3.263e^-4	0.789	NON_SYNONYMOUS_CODING Obp19c DOWNSTREAM Obp19b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15150421	X_15150421_SNP [dm3] X_15256388_SNP [dm6]	A	G	3.266e^-4	0.789	INTERGENIC
2L	10980755	2L_10980755_SNP [dm3] 2L_10980755_SNP [dm6]	G	A	3.280e^-4	0.789	SYNONYMOUS_CODING SCAR	TF binding site mE1_TFBS_cad
3L	22295183	3L_22295183_INS [dm3] 3L_22302083_INS [dm6]	G	GTTG	3.286e^-4	0.789	INTRON Ten-m
2R	14642341	2R_14642341_SNP [dm3] 2R_18754836_SNP [dm6]	C	G	3.289e^-4	0.789	UPSTREAM Cyp12b2 DOWNSTREAM Hs3st-A INTERGENIC
X	20048001	X_20048001_SNP [dm3] X_20153968_SNP [dm6]	A	G	3.292e^-4	0.789	INTRON CG9572
2R	664609	2R_664609_INS [dm3] 2R_4777104_INS [dm6]	T	TAAATTT	3.296e^-4	0.789	INTERGENIC	transposable element FlyBase
X	5721856	X_5721856_INS [dm3] X_5827823_INS [dm6]	T	TT	3.304e^-4	0.789	INTRON CG15765
X	13865097	X_13865097_SNP [dm3] X_13971064_SNP [dm6]	A	G	3.304e^-4	0.789	INTRON mamo
3R	17358561	3R_17358561_SNP [dm3] 3R_21532839_SNP [dm6]	C	A	3.307e^-4	0.789	INTRON CR43372
3R	20405345	3R_20405345_SNP [dm3] 3R_24579623_SNP [dm6]	C	A	3.307e^-4	0.789	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1109394	3L_1109394_SNP [dm3] 3L_1109394_SNP [dm6]	G	T	3.308e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	1877860	X_1877860_DEL [dm3] X_1983827_DEL [dm6]	ATGTA	A	3.315e^-4	0.789	INTRON Hr4
X	15664335	X_15664335_SNP [dm3] X_15770302_SNP [dm6]	C	T	3.316e^-4	0.789	NON_SYNONYMOUS_CODING CG33172 DOWNSTREAM CG17209	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
3R	26966170	3R_26966170_SNP [dm3] 3R_31140448_SNP [dm6]	G	A	3.316e^-4	0.789	INTRON Gycbeta100B
2L	8774846	2L_8774846_SNP [dm3] 2L_8774846_SNP [dm6]	A	G	3.320e^-4	0.789	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13041156	2L_13041156_DEL [dm3] 2L_13041156_DEL [dm6]	AAGTGA	TT	3.328e^-4	0.789	INTRON CG9932
2L	13041165	2L_13041165_DEL [dm3] 2L_13041165_DEL [dm6]	ACAAGATCC	A	3.328e^-4	0.789	INTRON CG9932
2R	14754541	2R_14754541_SNP [dm3] 2R_18867036_SNP [dm6]	C	T	3.328e^-4	0.789	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2L	2694065	2L_2694065_SNP [dm3] 2L_2694065_SNP [dm6]	T	C	3.336e^-4	0.789	INTRON CG31690
3L	11838309	3L_11838309_SNP [dm3] 3L_11845209_SNP [dm6]	C	T	3.340e^-4	0.789	INTERGENIC
2R	786740	2R_786740_SNP [dm3] 2R_4899235_SNP [dm6]	A	T	3.349e^-4	0.789	INTRON CG44102	transposable element FlyBase
3L	8641106	3L_8641106_SNP [dm3] 3L_8648006_SNP [dm6]	A	G	3.368e^-4	0.789	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6180653	2R_6180653_SNP [dm3] 2R_10293148_SNP [dm6]	G	A	3.368e^-4	0.789	INTRON CAP
X	20027439	X_20027439_SNP [dm3] X_20133406_SNP [dm6]	G	A	3.369e^-4	0.789	UPSTREAM CG15322 INTERGENIC
3R	22808428	3R_22808428_SNP [dm3] 3R_26982706_SNP [dm6]	A	T	3.372e^-4	0.789	INTRON CG14253
3L	12391030	3L_12391030_SNP [dm3] 3L_12397930_SNP [dm6]	C	T	3.374e^-4	0.789	DOWNSTREAM Obp69a INTRON CG32104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12670051	2R_12670051_SNP [dm3] 2R_16782546_SNP [dm6]	A	T	3.374e^-4	0.789	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2046067	2L_2046067_SNP [dm3] 2L_2046067_SNP [dm6]	A	T	3.376e^-4	0.789	SPLICE_SITE_ACCEPTOR Kebab NON_SYNONYMOUS_CODING Kebab SPLICE_SITE_REGION Kebab UPSTREAM CR45298 INTRON Kebab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9619002	2L_9619002_SNP [dm3] 2L_9619002_SNP [dm6]	T	G	3.379e^-4	0.789	INTRON GlcAT-S
2L	9619005	2L_9619005_DEL [dm3] 2L_9619005_DEL [dm6]	GT	A	3.379e^-4	0.789	INTRON GlcAT-S
X	17002664	X_17002664_INS [dm3] X_17108631_INS [dm6]	G	GACTTTAACAAGTTAG...	3.380e^-4	0.789	INTRON CG5004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	818115	2R_818115_SNP [dm3] 2R_4930610_SNP [dm6]	T	G	3.384e^-4	0.789	INTRON Ir41a
2L	13443212	2L_13443212_SNP [dm3] 2L_13443212_SNP [dm6]	C	T	3.386e^-4	0.789	UPSTREAM CR45683 DOWNSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8659028	3L_8659028_SNP [dm3] 3L_8665928_SNP [dm6]	T	C	3.390e^-4	0.789	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	17212899	2L_17212899_DEL [dm3] 2L_17212899_DEL [dm6]	GTTGT	A	3.390e^-4	0.789	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA
X	7883750	X_7883750_SNP [dm3] X_7989717_SNP [dm6]	T	A	3.392e^-4	0.789	INTERGENIC
2R	14651209	2R_14651209_SNP [dm3] 2R_18763704_SNP [dm6]	A	C	3.392e^-4	0.789	INTRON Mctp
3R	25760601	3R_25760601_SNP [dm3] 3R_29934879_SNP [dm6]	G	A	3.397e^-4	0.789	SYNONYMOUS_CODING eIF2B-alpha DOWNSTREAM CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12670851	2R_12670851_SNP [dm3] 2R_16783346_SNP [dm6]	T	C	3.399e^-4	0.789	UPSTREAM CG5522 DOWNSTREAM resilin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9611317	3L_9611317_SNP [dm3] 3L_9618217_SNP [dm6]	A	C	3.400e^-4	0.789	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3R	26499678	3R_26499678_SNP [dm3] 3R_30673956_SNP [dm6]	G	A	3.404e^-4	0.789	INTERGENIC
3L	3842491	3L_3842491_SNP [dm3] 3L_3842491_SNP [dm6]	A	C	3.409e^-4	0.789	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	383450	2L_383450_SNP [dm3] 2L_383450_SNP [dm6]	T	C	3.412e^-4	0.789	INTRON al
2R	16114572	2R_16114572_SNP [dm3] 2R_20227067_SNP [dm6]	G	T	3.413e^-4	0.789	INTERGENIC
2L	14410597	2L_14410597_SNP [dm3] 2L_14410597_SNP [dm6]	A	G	3.413e^-4	0.789	DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	9125689	X_9125689_SNP [dm3] X_9231656_SNP [dm6]	G	T	3.414e^-4	0.789	SYNONYMOUS_CODING CG12121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	20057051	X_20057051_SNP [dm3] X_20163018_SNP [dm6]	C	T	3.415e^-4	0.789	UPSTREAM Phf7 INTRON Phf7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	9505689	2R_9505689_SNP [dm3] 2R_13618184_SNP [dm6]	A	T	3.420e^-4	0.789	INTERGENIC
X	17002671	X_17002671_SNP [dm3] X_17108638_SNP [dm6]	A	G	3.422e^-4	0.789	INTRON CG5004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11002963	3L_11002963_SNP [dm3] 3L_11009863_SNP [dm6]	T	A	3.425e^-4	0.789	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	1107758	3L_1107758_INS [dm3] 3L_1107758_INS [dm6]	C	CT	3.429e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	692556	2R_692556_DEL [dm3] 2R_4805051_DEL [dm6]	TTTGCTTCTGT...	T	3.430e^-4	0.789	INTERGENIC
2R	13601420	2R_13601420_SNP [dm3] 2R_17713915_SNP [dm6]	A	G	3.434e^-4	0.789	INTRON CG6424
3L	8639409	3L_8639409_SNP [dm3] 3L_8646309_SNP [dm6]	G	A	3.435e^-4	0.789	SYNONYMOUS_CODING CG13305 UPSTREAM Pex7 DOWNSTREAM Arr2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10866975	3L_10866975_SNP [dm3] 3L_10873875_SNP [dm6]	C	T	3.437e^-4	0.789	SPLICE_SITE_REGION tna INTRON tna	TF binding site mE1_TFBS_cad
3R	15058130	3R_15058130_SNP [dm3] 3R_19232408_SNP [dm6]	C	T	3.442e^-4	0.789	SYNONYMOUS_CODING unc79
3R	19245505	3R_19245505_SNP [dm3] 3R_23419783_SNP [dm6]	G	A	3.447e^-4	0.789	INTRON CG4374
2L	8973563	2L_8973563_SNP [dm3] 2L_8973563_SNP [dm6]	A	C	3.448e^-4	0.789	INTRON CG9541
2L	15282348	2L_15282348_SNP [dm3] 2L_15282348_SNP [dm6]	T	A	3.455e^-4	0.789	INTERGENIC
2R	18656011	2R_18656011_SNP [dm3] 2R_22768506_SNP [dm6]	A	G	3.459e^-4	0.789	INTRON CG42260
2L	8935474	2L_8935474_SNP [dm3] 2L_8935474_SNP [dm6]	A	C	3.459e^-4	0.789	NON_SYNONYMOUS_CODING Tsp29Fa
2R	15989693	2R_15989693_SNP [dm3] 2R_20102188_SNP [dm6]	C	T	3.459e^-4	0.789	INTERGENIC
2L	669337	2L_669337_SNP [dm3] 2L_669337_SNP [dm6]	A	G	3.470e^-4	0.789	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	9364173	2L_9364173_SNP [dm3] 2L_9364173_SNP [dm6]	C	T	3.471e^-4	0.789	UPSTREAM CR43404 INTERGENIC
2L	3729992	2L_3729992_SNP [dm3] 2L_3729992_SNP [dm6]	C	T	3.475e^-4	0.789	UPSTREAM CG10019 DOWNSTREAM Shaw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4743427	2L_4743427_SNP [dm3] 2L_4743427_SNP [dm6]	C	T	3.475e^-4	0.789	INTRON CG15630
3L	11838307	3L_11838307_SNP [dm3] 3L_11845207_SNP [dm6]	G	T	3.503e^-4	0.789	INTERGENIC
2L	20791440	2L_20791440_SNP [dm3] 2L_20791440_SNP [dm6]	T	C	3.514e^-4	0.789	SYNONYMOUS_CODING vari
3L	1404248	3L_1404248_SNP [dm3] 3L_1404248_SNP [dm6]	G	A	3.516e^-4	0.789	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11432177	2L_11432177_SNP [dm3] 2L_11432177_SNP [dm6]	T	A	3.521e^-4	0.789	INTERGENIC
3L	8641131	3L_8641131_SNP [dm3] 3L_8648031_SNP [dm6]	G	T	3.521e^-4	0.789	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12126268	3L_12126268_SNP [dm3] 3L_12133168_SNP [dm6]	G	T	3.543e^-4	0.789	SYNONYMOUS_CODING CG11534 DOWNSTREAM CG5645	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3R	22772780	3R_22772780_SNP [dm3] 3R_26947058_SNP [dm6]	T	C	3.551e^-4	0.789	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other
2R	3591451	2R_3591451_SNP [dm3] 2R_7703946_SNP [dm6]	G	T	3.553e^-4	0.789	NON_SYNONYMOUS_CODING CG34216 DOWNSTREAM CG30493
X	17686784	X_17686784_SNP [dm3] X_17792751_SNP [dm6]	A	T	3.563e^-4	0.789	INTRON OdsH
2R	17685111	2R_17685111_SNP [dm3] 2R_21797606_SNP [dm6]	G	A	3.566e^-4	0.789	DOWNSTREAM CG34204 & 1 other INTERGENIC
X	8502844	X_8502844_SNP [dm3] X_8608811_SNP [dm6]	A	T	3.569e^-4	0.789	INTERGENIC
2R	16177757	2R_16177757_DEL [dm3] 2R_20290252_DEL [dm6]	TTTC	T	3.571e^-4	0.789	INTRON Cpr56F & 1 other
3R	19431888	3R_19431888_SNP [dm3] 3R_23606166_SNP [dm6]	T	G	3.572e^-4	0.789	UTR_3_PRIME CG31145 UPSTREAM CG10184 DOWNSTREAM CG31145
2L	12508202	2L_12508202_DEL [dm3] 2L_12508202_DEL [dm6]	AC	A	3.573e^-4	0.789	INTRON bun EXON CR43051 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12681104	2R_12681104_SNP [dm3] 2R_16793599_SNP [dm6]	C	A	3.591e^-4	0.789	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
3L	2923422	3L_2923422_SNP [dm3] 3L_2923422_SNP [dm6]	T	A	3.593e^-4	0.789	INTRON Shab
3L	9920108	3L_9920108_SNP [dm3] 3L_9927008_SNP [dm6]	A	T	3.594e^-4	0.789	UPSTREAM CG34356 INTRON CG34356
3R	14077848	3R_14077848_SNP [dm3] 3R_18252126_SNP [dm6]	T	G	3.603e^-4	0.789	NON_SYNONYMOUS_CODING CG12320 DOWNSTREAM CG18598 & 2 others	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7851814	X_7851814_SNP [dm3] X_7957781_SNP [dm6]	C	T	3.606e^-4	0.789	SYNONYMOUS_CODING sws
2R	13495795	2R_13495795_SNP [dm3] 2R_17608290_SNP [dm6]	G	C	3.612e^-4	0.789	NON_SYNONYMOUS_CODING CG10936
X	15587694	X_15587694_SNP [dm3] X_15693661_SNP [dm6]	C	T	3.617e^-4	0.789	UPSTREAM CR45526 EXON CR45524	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3635565	2L_3635565_SNP [dm3] 2L_3635565_SNP [dm6]	A	T	3.618e^-4	0.789	INTRON for
2L	7688413	2L_7688413_SNP [dm3] 2L_7688413_SNP [dm6]	G	C	3.619e^-4	0.789	SYNONYMOUS_CODING Myo28B1 DOWNSTREAM CG18585
3L	8613825	3L_8613825_SNP [dm3] 3L_8620725_SNP [dm6]	A	G	3.622e^-4	0.789	SYNONYMOUS_CODING S-Lap2
3R	17358559	3R_17358559_SNP [dm3] 3R_21532837_SNP [dm6]	T	G	3.624e^-4	0.789	INTRON CR43372
X	19745574	X_19745574_SNP [dm3] X_19851541_SNP [dm6]	C	T	3.624e^-4	0.789	UTR_5_PRIME pico UPSTREAM Nup205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1673111	3L_1673111_SNP [dm3] 3L_1673111_SNP [dm6]	A	T	3.644e^-4	0.789	UPSTREAM CG13930 INTERGENIC
3L	8949995	3L_8949995_SNP [dm3] 3L_8956895_SNP [dm6]	T	A	3.656e^-4	0.789	DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10347140	2L_10347140_SNP [dm3] 2L_10347140_SNP [dm6]	T	C	3.658e^-4	0.789	SYNONYMOUS_CODING CG5022 DOWNSTREAM CG34367	TF binding site mE1_TFBS_cad
X	19954196	X_19954196_SNP [dm3] X_20060163_SNP [dm6]	A	G	3.660e^-4	0.789	INTRON Dop2R
3L	1909622	3L_1909622_SNP [dm3] 3L_1909622_SNP [dm6]	A	T	3.661e^-4	0.789	INTRON CG1887
3L	12526196	3L_12526196_SNP [dm3] 3L_12533096_SNP [dm6]	G	A	3.664e^-4	0.789	SYNONYMOUS_CODING Tsf2 UPSTREAM CG34242	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18061305	X_18061305_SNP [dm3] X_18167272_SNP [dm6]	T	C	3.667e^-4	0.789	INTRON Frq1
2L	20341371	2L_20341371_SNP [dm3] 2L_20341371_SNP [dm6]	T	C	3.669e^-4	0.789	UPSTREAM spir INTRON spir
X	8716998	X_8716998_SNP [dm3] X_8822965_SNP [dm6]	T	G	3.670e^-4	0.789	INTERGENIC
3L	1909632	3L_1909632_SNP [dm3] 3L_1909632_SNP [dm6]	T	A	3.671e^-4	0.789	INTRON CG1887
2R	11986358	2R_11986358_SNP [dm3] 2R_16098853_SNP [dm6]	T	C	3.673e^-4	0.789	UPSTREAM mRpL34 & 1 other DOWNSTREAM CG8414 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	14767832	X_14767832_SNP [dm3] X_14873799_SNP [dm6]	C	G	3.680e^-4	0.789	INTRON Flo2
2L	4224390	2L_4224390_SNP [dm3] 2L_4224390_SNP [dm6]	A	G	3.680e^-4	0.789	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25246358	3R_25246358_SNP [dm3] 3R_29420636_SNP [dm6]	A	C	3.684e^-4	0.789	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1220682	2R_1220682_SNP [dm3] 2R_5333177_SNP [dm6]	A	G	3.690e^-4	0.789	INTERGENIC	transposable element FlyBase
2L	9891235	2L_9891235_SNP [dm3] 2L_9891235_SNP [dm6]	C	T	3.691e^-4	0.789	SYNONYMOUS_CODING CG4537 UPSTREAM CG34183 DOWNSTREAM mtDNA-helicase	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	10686250	2L_10686250_MNP [dm3] 2L_10686250_MNP [dm6]	ACT	TAC	3.692e^-4	0.789	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
2R	15213486	2R_15213486_SNP [dm3] 2R_19325981_SNP [dm6]	G	A	3.695e^-4	0.789	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2L	3781788	2L_3781788_SNP [dm3] 2L_3781788_SNP [dm6]	T	A	3.697e^-4	0.789	INTRON bowl	TF binding site mE1_TFBS_cad
3R	19329925	3R_19329925_SNP [dm3] 3R_23504203_SNP [dm6]	T	G	3.702e^-4	0.789	INTERGENIC
3L	12921145	3L_12921145_SNP [dm3] 3L_12928045_SNP [dm6]	A	G	3.702e^-4	0.789	INTERGENIC
2L	9733207	2L_9733207_SNP [dm3] 2L_9733207_SNP [dm6]	G	A	3.704e^-4	0.789	SYNONYMOUS_CODING Nckx30C
X	11173198	X_11173198_SNP [dm3] X_11279165_SNP [dm6]	G	T	3.710e^-4	0.789	INTRON CG44422
2L	6240466	2L_6240466_SNP [dm3] 2L_6240466_SNP [dm6]	A	T	3.712e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	12725183	2L_12725183_SNP [dm3] 2L_12725183_SNP [dm6]	A	T	3.713e^-4	0.789	INTRON MRP
2L	11666234	2L_11666234_SNP [dm3] 2L_11666234_SNP [dm6]	T	A	3.718e^-4	0.789	DOWNSTREAM CR44481 INTERGENIC
3L	4603286	3L_4603286_SNP [dm3] 3L_4603286_SNP [dm6]	G	A	3.721e^-4	0.789	INTRON Src64B
3R	16145865	3R_16145865_SNP [dm3] 3R_20320143_SNP [dm6]	C	T	3.722e^-4	0.789	INTRON CG42668
3L	7878294	3L_7878294_SNP [dm3] 3L_7885194_SNP [dm6]	C	T	3.723e^-4	0.789	INTRON CG32365
2L	4253078	2L_4253078_SNP [dm3] 2L_4253078_SNP [dm6]	G	A	3.723e^-4	0.789	INTERGENIC
2R	18399769	2R_18399769_DEL [dm3] 2R_22512264_DEL [dm6]	AGTTCTTTGT	C	3.724e^-4	0.789	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6498772	3R_6498772_SNP [dm3] 3R_10673050_SNP [dm6]	T	G	3.730e^-4	0.789	INTERGENIC
3L	12879610	3L_12879610_SNP [dm3] 3L_12886510_SNP [dm6]	A	G	3.731e^-4	0.789	NON_SYNONYMOUS_CODING CG14120
2R	19493098	2R_19493098_SNP [dm3] 2R_23605575_SNP [dm6]	A	T	3.732e^-4	0.789	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
2R	14754126	2R_14754126_SNP [dm3] 2R_18866621_SNP [dm6]	T	A	3.739e^-4	0.789	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
2R	18930396	2R_18930396_SNP [dm3] 2R_23042873_SNP [dm6]	A	G	3.739e^-4	0.789	UTR_5_PRIME CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11171729	3L_11171729_SNP [dm3] 3L_11178629_SNP [dm6]	T	C	3.764e^-4	0.789	INTRON GlcAT-P	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1679990	3L_1679990_SNP [dm3] 3L_1679990_SNP [dm6]	A	T	3.775e^-4	0.789	INTRON CG7991
X	5062990	X_5062990_SNP [dm3] X_5168957_SNP [dm6]	T	C	3.777e^-4	0.789	INTRON rg & 1 other
2R	8372579	2R_8372579_SNP [dm3] 2R_12485074_SNP [dm6]	T	C	3.779e^-4	0.789	INTRON Dh44-R2
X	15668798	X_15668798_SNP [dm3] X_15774765_SNP [dm6]	G	A	3.794e^-4	0.789	SYNONYMOUS_CODING CG43672
2L	11305632	2L_11305632_SNP [dm3] 2L_11305632_SNP [dm6]	G	A	3.795e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11305675	2L_11305675_SNP [dm3] 2L_11305675_SNP [dm6]	C	T	3.795e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1560414	2L_1560414_DEL [dm3] 2L_1560414_DEL [dm6]	CTAGCGATTCTGC...	T	3.799e^-4	0.789	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8751862	3L_8751862_SNP [dm3] 3L_8758762_SNP [dm6]	A	G	3.799e^-4	0.789	INTRON Fhos
2R	13496606	2R_13496606_SNP [dm3] 2R_17609101_SNP [dm6]	G	T	3.800e^-4	0.789	NON_SYNONYMOUS_CODING CG10936
2R	11830599	2R_11830599_SNP [dm3] 2R_15943094_SNP [dm6]	A	G	3.801e^-4	0.789	UPSTREAM CG30093 INTRON Cyp4aa1
2L	7513832	2L_7513832_SNP [dm3] 2L_7513832_SNP [dm6]	A	T	3.810e^-4	0.789	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6461586	3L_6461586_SNP [dm3] 3L_6468486_SNP [dm6]	A	G	3.811e^-4	0.789	INTRON CG42747
2R	3764797	2R_3764797_SNP [dm3] 2R_7877292_SNP [dm6]	T	A	3.820e^-4	0.789	INTRON Dgk
3R	19068163	3R_19068163_SNP [dm3] 3R_23242441_SNP [dm6]	C	T	3.823e^-4	0.789	INTRON CG4467
2L	3813075	2L_3813075_SNP [dm3] 2L_3813075_SNP [dm6]	C	T	3.844e^-4	0.789	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14752154	2R_14752154_SNP [dm3] 2R_18864649_SNP [dm6]	A	T	3.845e^-4	0.789	UTR_3_PRIME CG43071 DOWNSTREAM CG43071 & 1 other
X	17686762	X_17686762_SNP [dm3] X_17792729_SNP [dm6]	C	G	3.850e^-4	0.789	INTRON OdsH
3R	24938469	3R_24938469_SNP [dm3] 3R_29112747_SNP [dm6]	A	T	3.864e^-4	0.789	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3R	24938561	3R_24938561_SNP [dm3] 3R_29112839_SNP [dm6]	C	T	3.864e^-4	0.789	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5267657	2L_5267657_SNP [dm3] 2L_5267657_SNP [dm6]	C	T	3.864e^-4	0.789	NON_SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
2L	2685155	2L_2685155_SNP [dm3] 2L_2685155_SNP [dm6]	G	C	3.867e^-4	0.789	INTRON CG31690
3L	14506357	3L_14506357_SNP [dm3] 3L_14513257_SNP [dm6]	T	A	3.867e^-4	0.789	UTR_5_PRIME bbg	TF binding site mE1_TFBS_bab1
3L	5474372	3L_5474372_SNP [dm3] 3L_5481272_SNP [dm6]	G	C	3.873e^-4	0.789	SYNONYMOUS_CODING CG4835
2L	3795179	2L_3795179_SNP [dm3] 2L_3795179_SNP [dm6]	G	A	3.880e^-4	0.789	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13041181	2L_13041181_SNP [dm3] 2L_13041181_SNP [dm6]	C	A	3.885e^-4	0.789	INTRON CG9932
2L	13041184	2L_13041184_SNP [dm3] 2L_13041184_SNP [dm6]	A	T	3.885e^-4	0.789	INTRON CG9932
3L	8719344	3L_8719344_SNP [dm3] 3L_8726244_SNP [dm6]	T	C	3.892e^-4	0.789	UPSTREAM CG43965 & 1 other DOWNSTREAM CG6511 INTERGENIC
2R	710701	2R_710701_SNP [dm3] 2R_4823196_SNP [dm6]	T	C	3.893e^-4	0.789	INTRON CG17528
X	7876713	X_7876713_SNP [dm3] X_7982680_SNP [dm6]	G	C	3.897e^-4	0.789	INTRON sn
3R	21386645	3R_21386645_SNP [dm3] 3R_25560923_SNP [dm6]	A	G	3.902e^-4	0.789	INTRON msi
2L	8245507	2L_8245507_SNP [dm3] 2L_8245507_SNP [dm6]	T	A	3.903e^-4	0.789	INTRON CG8086
2L	13882575	2L_13882575_SNP [dm3] 2L_13882575_SNP [dm6]	A	G	3.905e^-4	0.789	INTRON CenG1A
3R	18590013	3R_18590013_SNP [dm3] 3R_22764291_SNP [dm6]	A	C	3.909e^-4	0.789	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12427596	3L_12427596_SNP [dm3] 3L_12434496_SNP [dm6]	G	A	3.910e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	15058193	3R_15058193_SNP [dm3] 3R_19232471_SNP [dm6]	G	A	3.911e^-4	0.789	SYNONYMOUS_CODING unc79
X	22105524	X_22105524_SNP [dm3] X_22703688_SNP [dm6]	G	A	3.927e^-4	0.789	INTRON CR44997	transposable element FlyBase
X	14765457	X_14765457_SNP [dm3] X_14871424_SNP [dm6]	T	A	3.940e^-4	0.789	UPSTREAM CG9518 INTRON Flo2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6060189	2R_6060189_SNP [dm3] 2R_10172684_SNP [dm6]	A	C	3.940e^-4	0.789	INTRON KCNQ
2L	9364174	2L_9364174_SNP [dm3] 2L_9364174_SNP [dm6]	T	C	3.942e^-4	0.789	UPSTREAM CR43404 INTERGENIC
3R	20920041	3R_20920041_SNP [dm3] 3R_25094319_SNP [dm6]	G	A	3.942e^-4	0.789	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19215970	2L_19215970_SNP [dm3] 2L_19215970_SNP [dm6]	G	C	3.951e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	751139	X_751139_SNP [dm3] X_857106_SNP [dm6]	G	A	3.958e^-4	0.789	INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	631018	2R_631018_SNP [dm3] 2R_4743513_SNP [dm6]	T	G	3.968e^-4	0.789	UPSTREAM conu INTERGENIC
X	5315495	X_5315495_SNP [dm3] X_5421462_SNP [dm6]	C	T	3.969e^-4	0.789	UPSTREAM CG4165 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
X	18163047	X_18163047_SNP [dm3] X_18269014_SNP [dm6]	A	G	3.970e^-4	0.789	INTERGENIC
2R	632632	2R_632632_SNP [dm3] 2R_4745127_SNP [dm6]	A	T	3.970e^-4	0.789	INTRON conu
X	19965118	X_19965118_INS [dm3] X_20071085_INS [dm6]	T	TCTCTTCCAGTTAGCAGAGC...	3.974e^-4	0.789	INTERGENIC
3L	11539460	3L_11539460_SNP [dm3] 3L_11546360_SNP [dm6]	C	T	3.986e^-4	0.789	INTRON Mob2
3R	20293436	3R_20293436_SNP [dm3] 3R_24467714_SNP [dm6]	T	G	3.986e^-4	0.789	INTERGENIC
2L	4253073	2L_4253073_INS [dm3] 2L_4253073_INS [dm6]	T	TGT	3.990e^-4	0.789	INTERGENIC
2R	10820945	2R_10820945_SNP [dm3] 2R_14933440_SNP [dm6]	T	A	3.994e^-4	0.789	UPSTREAM CG12853 & 1 other INTRON CG10253	TF binding site mE1_TFBS_Trl
3L	22126694	3L_22126694_SNP [dm3] 3L_22133594_SNP [dm6]	T	A	3.997e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16175855	2R_16175855_SNP [dm3] 2R_20288350_SNP [dm6]	A	G	4.000e^-4	0.789	DOWNSTREAM Cpr56F & 1 other INTERGENIC
3L	11659342	3L_11659342_SNP [dm3] 3L_11666242_SNP [dm6]	C	T	4.000e^-4	0.789	INTRON CG32085
3L	8754729	3L_8754729_SNP [dm3] 3L_8761629_SNP [dm6]	G	C	4.005e^-4	0.789	SYNONYMOUS_CODING Fhos UTR_5_PRIME Fhos	TF binding site mE1_TFBS_inv
3L	8754768	3L_8754768_SNP [dm3] 3L_8761668_SNP [dm6]	C	T	4.005e^-4	0.789	SYNONYMOUS_CODING Fhos UTR_5_PRIME Fhos	TF binding site mE1_TFBS_inv
2R	14619551	2R_14619551_SNP [dm3] 2R_18732046_SNP [dm6]	C	A	4.005e^-4	0.789	INTRON Hs3st-A
2L	13611401	2L_13611401_SNP [dm3] 2L_13611401_SNP [dm6]	G	A	4.011e^-4	0.789	INTRON kuz
2R	14645386	2R_14645386_SNP [dm3] 2R_18757881_SNP [dm6]	A	T	4.015e^-4	0.789	NON_SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
2R	14645422	2R_14645422_SNP [dm3] 2R_18757917_SNP [dm6]	G	T	4.015e^-4	0.789	NON_SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
3L	10143019	3L_10143019_SNP [dm3] 3L_10149919_SNP [dm6]	A	G	4.023e^-4	0.789	INTRON dpr10
2R	14641630	2R_14641630_SNP [dm3] 2R_18754125_SNP [dm6]	G	T	4.023e^-4	0.789	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
3L	11628398	3L_11628398_SNP [dm3] 3L_11635298_SNP [dm6]	C	A	4.025e^-4	0.789	INTRON CG32091
2L	12160158	2L_12160158_SNP [dm3] 2L_12160158_SNP [dm6]	C	T	4.029e^-4	0.789	INTRON CG31760	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13041164	2L_13041164_SNP [dm3] 2L_13041164_SNP [dm6]	C	T	4.034e^-4	0.789	INTRON CG9932
3R	6736381	3R_6736381_SNP [dm3] 3R_10910659_SNP [dm6]	T	C	4.035e^-4	0.789	INTERGENIC
2L	7099472	2L_7099472_SNP [dm3] 2L_7099472_SNP [dm6]	A	T	4.038e^-4	0.789	UTR_3_PRIME Pvf3 DOWNSTREAM Pvf3
2R	14509502	2R_14509502_SNP [dm3] 2R_18621997_SNP [dm6]	A	T	4.045e^-4	0.789	SPLICE_SITE_REGION CG5335 INTRON Atg7 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8648075	3L_8648075_SNP [dm3] 3L_8654975_SNP [dm6]	C	T	4.049e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2L	2420684	2L_2420684_INS [dm3] 2L_2420684_INS [dm6]	T	TT	4.049e^-4	0.789	UPSTREAM CG34447 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01
2R	1081866	2R_1081866_SNP [dm3] 2R_5194361_SNP [dm6]	C	T	4.050e^-4	0.789	INTRON Nipped-A	transposable element FlyBase
2R	4424300	2R_4424300_SNP [dm3] 2R_8536795_SNP [dm6]	C	A	4.050e^-4	0.789	INTERGENIC
2L	13643869	2L_13643869_SNP [dm3] 2L_13643869_SNP [dm6]	A	C	4.063e^-4	0.789	DOWNSTREAM CR44726 INTERGENIC
2R	6060509	2R_6060509_SNP [dm3] 2R_10173004_SNP [dm6]	A	C	4.065e^-4	0.789	INTRON KCNQ
3R	16436052	3R_16436052_SNP [dm3] 3R_20610330_SNP [dm6]	G	A	4.067e^-4	0.789	DOWNSTREAM CG15923 INTRON bon
3L	2845434	3L_2845434_INS [dm3] 3L_2845434_INS [dm6]	T	TGTTAT	4.077e^-4	0.789	INTRON CG43444
2L	7227353	2L_7227353_SNP [dm3] 2L_7227353_SNP [dm6]	T	C	4.089e^-4	0.789	SPLICE_SITE_REGION Ndae1 UPSTREAM CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	834523	2R_834523_SNP [dm3] 2R_4947018_SNP [dm6]	T	A	4.089e^-4	0.789	INTRON Ir41a	transposable element FlyBase
2L	9410106	2L_9410106_SNP [dm3] 2L_9410106_SNP [dm6]	T	A	4.090e^-4	0.789	INTRON Shawl
2R	14754311	2R_14754311_SNP [dm3] 2R_18866806_SNP [dm6]	G	A	4.092e^-4	0.789	UPSTREAM DptB DOWNSTREAM Dpt INTERGENIC
4	747849	4_747849_DEL [dm3] 4_727223_DEL [dm6]	AATGGTTATA	A	4.096e^-4	0.789	INTRON bt
X	8517700	X_8517700_SNP [dm3] X_8623667_SNP [dm6]	A	G	4.099e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15213274	2R_15213274_SNP [dm3] 2R_19325769_SNP [dm6]	C	T	4.107e^-4	0.789	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13373269	3L_13373269_SNP [dm3] 3L_13380169_SNP [dm6]	G	A	4.108e^-4	0.789	NON_SYNONYMOUS_CODING CG14111 DOWNSTREAM SNCF & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19113657	2L_19113657_SNP [dm3] 2L_19113657_SNP [dm6]	C	T	4.115e^-4	0.789	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9918725	2L_9918725_SNP [dm3] 2L_9918725_SNP [dm6]	C	A	4.121e^-4	0.789	UPSTREAM CG5885 INTRON CG4598	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19239503	2L_19239503_SNP [dm3] 2L_19239503_SNP [dm6]	A	G	4.125e^-4	0.789	INTERGENIC
2R	12972063	2R_12972063_SNP [dm3] 2R_17084558_SNP [dm6]	T	A	4.127e^-4	0.789	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24938695	3R_24938695_SNP [dm3] 3R_29112973_SNP [dm6]	A	C	4.129e^-4	0.789	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26468719	3R_26468719_SNP [dm3] 3R_30642997_SNP [dm6]	A	G	4.132e^-4	0.789	DOWNSTREAM CG31013 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4028521	2L_4028521_INS [dm3] 2L_4028521_INS [dm6]	A	AAGA	4.139e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15058137	3R_15058137_SNP [dm3] 3R_19232415_SNP [dm6]	G	T	4.151e^-4	0.789	NON_SYNONYMOUS_CODING unc79
3R	15058139	3R_15058139_SNP [dm3] 3R_19232417_SNP [dm6]	G	C	4.151e^-4	0.789	SYNONYMOUS_CODING unc79
X	8019405	X_8019405_SNP [dm3] X_8125372_SNP [dm6]	A	T	4.153e^-4	0.789	INTRON cyr	TF binding site BDTNP1_TFBS_dl
3R	26354167	3R_26354167_SNP [dm3] 3R_30528445_SNP [dm6]	G	A	4.155e^-4	0.789	EXON CR45552	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16144918	3R_16144918_SNP [dm3] 3R_20319196_SNP [dm6]	C	T	4.156e^-4	0.789	INTRON CG42668
2L	9777436	2L_9777436_SNP [dm3] 2L_9777436_SNP [dm6]	A	C	4.161e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8019420	X_8019420_SNP [dm3] X_8125387_SNP [dm6]	T	A	4.163e^-4	0.789	INTRON cyr	TF binding site BDTNP1_TFBS_dl
2L	10344275	2L_10344275_SNP [dm3] 2L_10344275_SNP [dm6]	T	C	4.166e^-4	0.789	UPSTREAM CG5022 DOWNSTREAM Sps2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15428060	3R_15428060_SNP [dm3] 3R_19602338_SNP [dm6]	A	G	4.168e^-4	0.789	SYNONYMOUS_CODING CG7333
2L	5070009	2L_5070009_SNP [dm3] 2L_5070009_SNP [dm6]	C	T	4.169e^-4	0.789	UPSTREAM RpL37A DOWNSTREAM CR45305 INTRON qtc
3R	21753989	3R_21753989_SNP [dm3] 3R_25928267_SNP [dm6]	G	A	4.171e^-4	0.789	INTRON CCAP-R
3L	8602422	3L_8602422_SNP [dm3] 3L_8609322_SNP [dm6]	G	A	4.176e^-4	0.789	INTRON CG6282
3R	7301369	3R_7301369_SNP [dm3] 3R_11475647_SNP [dm6]	G	A	4.184e^-4	0.789	INTERGENIC
3L	8315023	3L_8315023_SNP [dm3] 3L_8321923_SNP [dm6]	G	A	4.186e^-4	0.789	NON_SYNONYMOUS_CODING CG13670
2R	19793574	2R_19793574_SNP [dm3] 2R_23906051_SNP [dm6]	C	T	4.193e^-4	0.789	DOWNSTREAM CG13562 INTRON Nap1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_jumu mE1_TFBS_sens
X	19784699	X_19784699_SNP [dm3] X_19890666_SNP [dm6]	C	T	4.198e^-4	0.789	UPSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9490546	2L_9490546_SNP [dm3] 2L_9490546_SNP [dm6]	A	T	4.203e^-4	0.789	DOWNSTREAM Gdi INTERGENIC
3L	13373261	3L_13373261_SNP [dm3] 3L_13380161_SNP [dm6]	G	A	4.208e^-4	0.789	SYNONYMOUS_CODING CG14111 DOWNSTREAM SNCF & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14270086	2R_14270086_SNP [dm3] 2R_18382581_SNP [dm6]	T	C	4.211e^-4	0.789	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	6051169	2R_6051169_SNP [dm3] 2R_10163664_SNP [dm6]	C	T	4.220e^-4	0.789	INTRON KCNQ
3L	22126704	3L_22126704_SNP [dm3] 3L_22133604_SNP [dm6]	T	C	4.226e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6967314	2R_6967314_SNP [dm3] 2R_11079809_SNP [dm6]	T	C	4.236e^-4	0.789	INTRON luna
3R	22790550	3R_22790550_SNP [dm3] 3R_26964828_SNP [dm6]	A	C	4.238e^-4	0.789	UPSTREAM Tsp97E DOWNSTREAM Gr97a INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	16994046	X_16994046_SNP [dm3] X_17100013_SNP [dm6]	T	A	4.244e^-4	0.789	INTRON CG4991
X	20318871	X_20318871_SNP [dm3] X_20447844_SNP [dm6]	T	C	4.252e^-4	0.789	INTERGENIC

By genomic position
Variant impact
Gene name

BacterialLoad_PR phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results