DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.820e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03115
In_2L_t	0.01041
In_2R_NS	0.02188

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	3.3586	0.0669
In_2L_t	7.2257	0.027
In_2R_NS	6.1453	0.0463

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2089 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	10855844	X_10855844_SNP [dm3] X_10961811_SNP [dm6]	G	A	6.600e^-7	0.693	INTRON Myo10A
3L	16532066	3L_16532066_DEL [dm3] 3L_16538966_DEL [dm6]	CA	C	1.178e^-6	0.693	INTRON CG43373
2L	7958966	2L_7958966_SNP [dm3] 2L_7958966_SNP [dm6]	G	T	2.507e^-6	0.693	INTRON Snoo
2R	15248610	2R_15248610_SNP [dm3] 2R_19361105_SNP [dm6]	A	C	2.547e^-6	0.693	SYNONYMOUS_CODING CG11961
2R	15248616	2R_15248616_SNP [dm3] 2R_19361111_SNP [dm6]	T	C	2.547e^-6	0.693	SYNONYMOUS_CODING CG11961
3L	16532158	3L_16532158_SNP [dm3] 3L_16539058_SNP [dm6]	C	G	2.837e^-6	0.693	INTRON CG43373
2R	17397098	2R_17397098_SNP [dm3] 2R_21509593_SNP [dm6]	G	T	2.921e^-6	0.693	INTRON MESK2
2L	9405390	2L_9405390_SNP [dm3] 2L_9405390_SNP [dm6]	G	A	2.956e^-6	0.693	INTRON Shawl
2L	12516588	2L_12516588_SNP [dm3] 2L_12516588_SNP [dm6]	A	G	4.283e^-6	0.768	SYNONYMOUS_CODING bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6975347	2R_6975347_INS [dm3] 2R_11087842_INS [dm6]	T	TCGTCTAGGTT...	4.572e^-6	0.768	UPSTREAM CG43189 INTRON luna & 1 other	TF binding site mE1_TFBS_Kr
2L	10601264	2L_10601264_SNP [dm3] 2L_10601264_SNP [dm6]	T	C	5.557e^-6	0.768	INTRON Trim9
3L	8949995	3L_8949995_SNP [dm3] 3L_8956895_SNP [dm6]	T	A	5.738e^-6	0.768	DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16114803	2R_16114803_SNP [dm3] 2R_20227298_SNP [dm6]	A	G	5.857e^-6	0.768	INTERGENIC
2R	15213498	2R_15213498_SNP [dm3] 2R_19325993_SNP [dm6]	C	G	5.903e^-6	0.768	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	12786317	2R_12786317_SNP [dm3] 2R_16898812_SNP [dm6]	A	G	6.145e^-6	0.768	SYNONYMOUS_CODING inaC
2L	7781627	2L_7781627_SNP [dm3] 2L_7781627_SNP [dm6]	G	A	7.404e^-6	0.86	UTR_5_PRIME CG7164 DOWNSTREAM Uro	TF binding site mE1_TFBS_cad
3R	15642854	3R_15642854_SNP [dm3] 3R_19817132_SNP [dm6]	A	T	8.428e^-6	0.86	INTRON bnl	TF binding site BDTNP1_TFBS_twi
3L	7231135	3L_7231135_SNP [dm3] 3L_7238035_SNP [dm6]	A	T	8.716e^-6	0.86	NON_SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10601307	2L_10601307_SNP [dm3] 2L_10601307_SNP [dm6]	T	G	8.960e^-6	0.86	INTRON Trim9
2R	18038355	2R_18038355_INS [dm3] 2R_22150850_INS [dm6]	A	ATA	9.659e^-6	0.86	INTRON a
X	19887748	X_19887748_SNP [dm3] X_19993715_SNP [dm6]	A	G	1.061e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16114766	2R_16114766_SNP [dm3] 2R_20227261_SNP [dm6]	G	T	1.078e^-5	0.86	INTERGENIC
2R	19793574	2R_19793574_SNP [dm3] 2R_23906051_SNP [dm6]	C	T	1.087e^-5	0.86	DOWNSTREAM CG13562 INTRON Nap1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_jumu mE1_TFBS_sens
3R	16165961	3R_16165961_SNP [dm3] 3R_20340239_SNP [dm6]	G	A	1.109e^-5	0.86	NON_SYNONYMOUS_CODING Ir92a
3L	5495045	3L_5495045_SNP [dm3] 3L_5501945_SNP [dm6]	G	A	1.146e^-5	0.86	UPSTREAM CR44519 INTERGENIC
X	19887739	X_19887739_SNP [dm3] X_19993706_SNP [dm6]	G	A	1.198e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7402798	2R_7402798_SNP [dm3] 2R_11515293_SNP [dm6]	A	T	1.390e^-5	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11158255	2L_11158255_SNP [dm3] 2L_11158255_SNP [dm6]	G	A	1.494e^-5	0.873	UTR_3_PRIME Ca-beta DOWNSTREAM Ca-beta
3L	16282719	3L_16282719_SNP [dm3] 3L_16289619_SNP [dm6]	T	G	1.570e^-5	0.873	DOWNSTREAM CG13045 INTERGENIC
3L	2744793	3L_2744793_SNP [dm3] 3L_2744793_SNP [dm6]	C	T	1.733e^-5	0.873	INTRON Mrtf
3L	7231158	3L_7231158_SNP [dm3] 3L_7238058_SNP [dm6]	T	C	1.774e^-5	0.873	SYNONYMOUS_CODING CG14829 UPSTREAM BHD	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11018344	3R_11018344_SNP [dm3] 3R_15192622_SNP [dm6]	T	G	1.792e^-5	0.873	SYNONYMOUS_CODING CG6752 UPSTREAM mir-3644
3R	16165997	3R_16165997_SNP [dm3] 3R_20340275_SNP [dm6]	G	A	1.944e^-5	0.873	NON_SYNONYMOUS_CODING Ir92a
3L	18104074	3L_18104074_SNP [dm3] 3L_18110974_SNP [dm6]	A	G	1.995e^-5	0.873	SYNONYMOUS_CODING mus304	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18590013	3R_18590013_SNP [dm3] 3R_22764291_SNP [dm6]	A	C	2.075e^-5	0.873	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9803224	X_9803224_DEL [dm3] X_9909191_DEL [dm6]	ATCTTAAGTA	A	2.078e^-5	0.873	UTR_3_PRIME CG1986 DOWNSTREAM CG1986	insulator Insulator_Class_II.mE01
2R	17378918	2R_17378918_SNP [dm3] 2R_21491413_SNP [dm6]	T	G	2.169e^-5	0.873	INTRON Fkbp14
3R	16166844	3R_16166844_SNP [dm3] 3R_20341122_SNP [dm6]	G	A	2.201e^-5	0.873	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16532177	3L_16532177_SNP [dm3] 3L_16539077_SNP [dm6]	C	A	2.215e^-5	0.873	INTRON CG43373
3R	19037162	3R_19037162_SNP [dm3] 3R_23211440_SNP [dm6]	G	T	2.261e^-5	0.873	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	10855888	X_10855888_SNP [dm3] X_10961855_SNP [dm6]	A	T	2.301e^-5	0.873	INTRON Myo10A
2R	16175836	2R_16175836_SNP [dm3] 2R_20288331_SNP [dm6]	T	G	2.461e^-5	0.873	UTR_3_PRIME CG34199 DOWNSTREAM Cpr56F
2R	12680355	2R_12680355_SNP [dm3] 2R_16792850_SNP [dm6]	T	A	2.469e^-5	0.873	DOWNSTREAM CG15615 & 1 other INTRON CG15919
2L	16628423	2L_16628423_SNP [dm3] 2L_16628423_SNP [dm6]	T	C	2.583e^-5	0.873	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16304273	2R_16304273_SNP [dm3] 2R_20416768_SNP [dm6]	C	A	2.593e^-5	0.873	INTERGENIC
3R	25974169	3R_25974169_SNP [dm3] 3R_30148447_SNP [dm6]	G	T	2.766e^-5	0.873	INTRON AdoR
3L	4074310	3L_4074310_SNP [dm3] 3L_4074310_SNP [dm6]	T	C	2.774e^-5	0.873	UTR_3_PRIME Gad1 UPSTREAM Faa
X	13964945	X_13964945_INS [dm3] X_14070912_INS [dm6]	A	AA	2.786e^-5	0.873	DOWNSTREAM tRNA:S474:12Eh INTERGENIC
3R	16166816	3R_16166816_SNP [dm3] 3R_20341094_SNP [dm6]	T	C	2.852e^-5	0.873	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3222769	2L_3222769_SNP [dm3] 2L_3222769_SNP [dm6]	T	A	2.865e^-5	0.873	INTERGENIC
X	20159392	X_20159392_DEL [dm3] X_20288365_DEL [dm6]	ACCTCCAAGAA...	A	2.934e^-5	0.873	INTERGENIC
3R	16165980	3R_16165980_SNP [dm3] 3R_20340258_SNP [dm6]	T	C	2.952e^-5	0.873	SYNONYMOUS_CODING Ir92a
X	14614898	X_14614898_SNP [dm3] X_14720865_SNP [dm6]	T	G	2.980e^-5	0.873	INTRON NetB
2R	3529348	2R_3529348_SNP [dm3] 2R_7641843_SNP [dm6]	A	G	2.998e^-5	0.873	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
3L	1363811	3L_1363811_INS [dm3] 3L_1363811_INS [dm6]	C	CT	3.189e^-5	0.873	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17685083	2R_17685083_DEL [dm3] 2R_21797578_DEL [dm6]	GTC	G	3.192e^-5	0.873	DOWNSTREAM CG34204 & 1 other INTERGENIC
3R	10807767	3R_10807767_SNP [dm3] 3R_14982045_SNP [dm6]	G	A	3.202e^-5	0.873	INTERGENIC
2R	18452463	2R_18452463_SNP [dm3] 2R_22564958_SNP [dm6]	C	T	3.204e^-5	0.873	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10686264	2L_10686264_SNP [dm3] 2L_10686264_SNP [dm6]	T	C	3.218e^-5	0.873	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
X	17276858	X_17276858_SNP [dm3] X_17382825_SNP [dm6]	C	G	3.364e^-5	0.873	INTERGENIC
3R	24418101	3R_24418101_SNP [dm3] 3R_28592379_SNP [dm6]	G	A	3.394e^-5	0.873	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
X	9803405	X_9803405_SNP [dm3] X_9909372_SNP [dm6]	C	T	3.438e^-5	0.873	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
X	20159376	X_20159376_DEL [dm3] X_20288349_DEL [dm6]	AAAAAGACAAAGG...	A	3.491e^-5	0.873	INTERGENIC
2R	17476886	2R_17476886_SNP [dm3] 2R_21589381_SNP [dm6]	G	T	3.640e^-5	0.873	UPSTREAM CG33225 INTERGENIC
2L	10347713	2L_10347713_SNP [dm3] 2L_10347713_SNP [dm6]	A	C	3.719e^-5	0.873	DOWNSTREAM CG34367 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16114768	2R_16114768_SNP [dm3] 2R_20227263_SNP [dm6]	G	A	3.823e^-5	0.873	INTERGENIC
2R	17924105	2R_17924105_SNP [dm3] 2R_22036600_SNP [dm6]	A	C	3.829e^-5	0.873	DOWNSTREAM CG9308 INTRON CG34370
2R	18182229	2R_18182229_SNP [dm3] 2R_22294724_SNP [dm6]	T	G	3.886e^-5	0.873	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10503744	2L_10503744_SNP [dm3] 2L_10503744_SNP [dm6]	A	G	3.935e^-5	0.873	INTRON Myo31DF
X	8578764	X_8578764_INS [dm3] X_8684731_INS [dm6]	T	TC	3.977e^-5	0.873	UPSTREAM CG11284 INTRON CG11284
2L	8331177	2L_8331177_SNP [dm3] 2L_8331177_SNP [dm6]	G	A	4.025e^-5	0.873	INTRON CG14275
2L	2439054	2L_2439054_SNP [dm3] 2L_2439054_SNP [dm6]	A	T	4.096e^-5	0.873	INTRON dpp	regulatory region REDfly_CRMs
2L	4055620	2L_4055620_SNP [dm3] 2L_4055620_SNP [dm6]	A	C	4.222e^-5	0.873	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	15248685	2R_15248685_SNP [dm3] 2R_19361180_SNP [dm6]	C	G	4.231e^-5	0.873	SYNONYMOUS_CODING CG11961
2R	12680354	2R_12680354_SNP [dm3] 2R_16792849_SNP [dm6]	C	T	4.263e^-5	0.873	DOWNSTREAM CG15615 & 1 other INTRON CG15919
2L	16615307	2L_16615307_SNP [dm3] 2L_16615307_SNP [dm6]	T	A	4.326e^-5	0.873	INTRON CG42389
X	10256595	X_10256595_DEL [dm3] X_10362562_DEL [dm6]	TTCTT	T	4.347e^-5	0.873	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10277243	3L_10277243_SNP [dm3] 3L_10284143_SNP [dm6]	C	T	4.378e^-5	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8701835	3R_8701835_SNP [dm3] 3R_12876113_SNP [dm6]	C	G	4.383e^-5	0.873	INTERGENIC
2R	13496606	2R_13496606_SNP [dm3] 2R_17609101_SNP [dm6]	G	T	4.396e^-5	0.873	NON_SYNONYMOUS_CODING CG10936
2L	16615338	2L_16615338_SNP [dm3] 2L_16615338_SNP [dm6]	A	T	4.477e^-5	0.873	INTRON CG42389
2R	18439537	2R_18439537_SNP [dm3] 2R_22552032_SNP [dm6]	A	T	4.519e^-5	0.873	UTR_3_PRIME CG6018 INTRON px	TF binding site mE1_TFBS_cad
X	3145196	X_3145196_SNP [dm3] X_3251163_SNP [dm6]	A	G	4.758e^-5	0.873	DOWNSTREAM Sgs4 INTRON dnc
X	21280250	X_21280250_SNP [dm3] X_21409223_SNP [dm6]	T	C	4.815e^-5	0.873	DOWNSTREAM CR45003 INTERGENIC
2L	4296683	2L_4296683_SNP [dm3] 2L_4296683_SNP [dm6]	G	T	4.862e^-5	0.873	INTRON tutl
X	16772051	X_16772051_SNP [dm3] X_16878018_SNP [dm6]	G	A	4.907e^-5	0.873	INTERGENIC
2R	15213519	2R_15213519_SNP [dm3] 2R_19326014_SNP [dm6]	G	T	4.953e^-5	0.873	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2L	13980790	2L_13980790_SNP [dm3] 2L_13980790_SNP [dm6]	T	G	4.956e^-5	0.873	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
2R	15213287	2R_15213287_SNP [dm3] 2R_19325782_SNP [dm6]	C	A	5.056e^-5	0.873	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17358439	3R_17358439_SNP [dm3] 3R_21532717_SNP [dm6]	T	C	5.158e^-5	0.873	EXON CR43372
X	16700589	X_16700589_SNP [dm3] X_16806556_SNP [dm6]	A	G	5.213e^-5	0.873	DOWNSTREAM CG13005 INTRON ppk28 & 1 other
2L	10288522	2L_10288522_SNP [dm3] 2L_10288522_SNP [dm6]	A	C	5.279e^-5	0.873	INTRON CG5604
2L	10980755	2L_10980755_SNP [dm3] 2L_10980755_SNP [dm6]	G	A	5.405e^-5	0.873	SYNONYMOUS_CODING SCAR	TF binding site mE1_TFBS_cad
X	16937006	X_16937006_SNP [dm3] X_17042973_SNP [dm6]	C	T	5.472e^-5	0.873	INTRON CG45002
X	9203759	X_9203759_INS [dm3] X_9309726_INS [dm6]	T	TCGTTTCCCTCCCTGA...	5.532e^-5	0.873	INTERGENIC
3L	1710777	3L_1710777_SNP [dm3] 3L_1710777_SNP [dm6]	G	T	5.611e^-5	0.873	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	17358561	3R_17358561_SNP [dm3] 3R_21532839_SNP [dm6]	C	A	5.618e^-5	0.873	INTRON CR43372
3R	10807234	3R_10807234_SNP [dm3] 3R_14981512_SNP [dm6]	C	G	5.800e^-5	0.873	INTERGENIC
3L	11628460	3L_11628460_SNP [dm3] 3L_11635360_SNP [dm6]	T	A	5.850e^-5	0.873	INTRON CG32091
X	14614886	X_14614886_SNP [dm3] X_14720853_SNP [dm6]	G	A	5.968e^-5	0.873	INTRON NetB
2L	3572309	2L_3572309_SNP [dm3] 2L_3572309_SNP [dm6]	C	T	5.998e^-5	0.873	INTERGENIC
2R	12998531	2R_12998531_SNP [dm3] 2R_17111026_SNP [dm6]	A	T	6.045e^-5	0.873	INTRON CG15611	TF binding site mE1_TFBS_inv
2L	15304430	2L_15304430_SNP [dm3] 2L_15304430_SNP [dm6]	T	C	6.219e^-5	0.873	INTERGENIC
3R	26024576	3R_26024576_SNP [dm3] 3R_30198854_SNP [dm6]	T	G	6.368e^-5	0.873	NON_SYNONYMOUS_CODING CG9743	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20017836	2L_20017836_SNP [dm3] 2L_20017836_SNP [dm6]	C	A	6.512e^-5	0.873	UPSTREAM CG43861 INTERGENIC
3R	26018588	3R_26018588_SNP [dm3] 3R_30192866_SNP [dm6]	T	A	6.526e^-5	0.873	INTERGENIC
2R	20128717	2R_20128717_SNP [dm3] 2R_24241194_SNP [dm6]	C	A	6.543e^-5	0.873	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10178671	2R_10178671_SNP [dm3] 2R_14291166_SNP [dm6]	T	C	6.544e^-5	0.873	NON_SYNONYMOUS_CODING Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	1649801	3L_1649801_SNP [dm3] 3L_1649801_SNP [dm6]	T	C	6.548e^-5	0.873	INTRON CG13920
X	10681768	X_10681768_SNP [dm3] X_10787735_SNP [dm6]	A	T	6.589e^-5	0.873	UPSTREAM sesB & 1 other DOWNSTREAM Imp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16465879	X_16465879_SNP [dm3] X_16571846_SNP [dm6]	G	A	6.699e^-5	0.873	INTRON CanA-14F
2R	18399732	2R_18399732_SNP [dm3] 2R_22512227_SNP [dm6]	A	G	6.723e^-5	0.873	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
2L	10686250	2L_10686250_MNP [dm3] 2L_10686250_MNP [dm6]	ACT	TAC	6.753e^-5	0.873	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
2L	19129166	2L_19129166_INS [dm3] 2L_19129166_INS [dm6]	T	TGATTT	6.804e^-5	0.873	UTR_3_PRIME l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3L	15077130	3L_15077130_SNP [dm3] 3L_15084030_SNP [dm6]	T	C	6.814e^-5	0.873	NON_SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad
3L	8949981	3L_8949981_SNP [dm3] 3L_8956881_SNP [dm6]	T	C	6.845e^-5	0.873	SPLICE_SITE_DONOR mRpL12 DOWNSTREAM GNBP3 INTRON mRpL12	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	5516317	X_5516317_SNP [dm3] X_5622284_SNP [dm6]	G	A	6.904e^-5	0.873	SPLICE_SITE_REGION Mlc-c UPSTREAM l_1_G0045 DOWNSTREAM mir-3645 INTRON Mlc-c EXON mir-3645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	8623138	2L_8623138_SNP [dm3] 2L_8623138_SNP [dm6]	A	T	6.992e^-5	0.873	INTRON Sema-1a
2R	18439539	2R_18439539_SNP [dm3] 2R_22552034_SNP [dm6]	C	T	7.020e^-5	0.873	UTR_3_PRIME CG6018 INTRON px	TF binding site mE1_TFBS_cad
2L	533659	2L_533659_SNP [dm3] 2L_533659_SNP [dm6]	T	C	7.059e^-5	0.873	INTRON ush	TF binding site mE1_TFBS_inv
3R	20405065	3R_20405065_SNP [dm3] 3R_24579343_SNP [dm6]	G	A	7.107e^-5	0.873	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6340801	2R_6340801_SNP [dm3] 2R_10453296_SNP [dm6]	C	T	7.134e^-5	0.873	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3L	10262274	3L_10262274_SNP [dm3] 3L_10269174_SNP [dm6]	C	T	7.153e^-5	0.873	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3L	11628450	3L_11628450_INS [dm3] 3L_11635350_INS [dm6]	G	GTTTTAACTTCAG...	7.198e^-5	0.873	INTRON CG32091
2R	14753586	2R_14753586_SNP [dm3] 2R_18866081_SNP [dm6]	G	A	7.257e^-5	0.873	SYNONYMOUS_CODING Dpt UPSTREAM CG43071
3R	17358544	3R_17358544_SNP [dm3] 3R_21532822_SNP [dm6]	T	A	7.289e^-5	0.873	INTRON CR43372
3R	16512263	3R_16512263_SNP [dm3] 3R_20686541_SNP [dm6]	A	C	7.308e^-5	0.873	INTERGENIC
2R	19793598	2R_19793598_SNP [dm3] 2R_23906075_SNP [dm6]	G	A	7.415e^-5	0.873	SYNONYMOUS_CODING Nap1 DOWNSTREAM CG13562	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19100085	2L_19100085_SNP [dm3] 2L_19100085_SNP [dm6]	G	A	7.528e^-5	0.873	INTRON Lim3
X	19887736	X_19887736_SNP [dm3] X_19993703_SNP [dm6]	T	A	7.578e^-5	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17034157	3R_17034157_SNP [dm3] 3R_21208435_SNP [dm6]	C	G	7.593e^-5	0.873	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3L	17443844	3L_17443844_SNP [dm3] 3L_17450744_SNP [dm6]	C	G	7.602e^-5	0.873	NON_SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9803183	X_9803183_SNP [dm3] X_9909150_SNP [dm6]	A	G	7.625e^-5	0.873	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
X	14614896	X_14614896_SNP [dm3] X_14720863_SNP [dm6]	C	T	7.654e^-5	0.873	INTRON NetB
2R	17231213	2R_17231213_SNP [dm3] 2R_21343708_SNP [dm6]	T	A	7.731e^-5	0.873	INTRON CG15666
X	12588122	X_12588122_SNP [dm3] X_12694089_SNP [dm6]	G	T	7.779e^-5	0.873	INTRON Smr	TF binding site mE1_TFBS_inv
2L	7619434	2L_7619434_SNP [dm3] 2L_7619434_SNP [dm6]	C	A	7.787e^-5	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18399769	2R_18399769_DEL [dm3] 2R_22512264_DEL [dm6]	AGTTCTTTGT	C	7.824e^-5	0.873	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	1316513	2R_1316513_SNP [dm3] 2R_5429008_SNP [dm6]	G	A	7.964e^-5	0.873	INTRON laccase2	transposable element FlyBase
2R	6483413	2R_6483413_INS [dm3] 2R_10595908_INS [dm6]	G	GATTTG	7.983e^-5	0.873	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	16114583	2R_16114583_SNP [dm3] 2R_20227078_SNP [dm6]	C	T	8.015e^-5	0.873	INTERGENIC
3R	18598182	3R_18598182_SNP [dm3] 3R_22772460_SNP [dm6]	C	A	8.047e^-5	0.873	UPSTREAM CG43095 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
3L	9886390	3L_9886390_SNP [dm3] 3L_9893290_SNP [dm6]	C	T	8.066e^-5	0.873	UTR_3_PRIME CalpB & 2 others DOWNSTREAM CG14164 & 1 other
X	3163858	X_3163858_SNP [dm3] X_3269825_SNP [dm6]	C	G	8.181e^-5	0.873	INTRON dnc
2L	13797030	2L_13797030_SNP [dm3] 2L_13797030_SNP [dm6]	A	G	8.225e^-5	0.873	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
2L	5267657	2L_5267657_SNP [dm3] 2L_5267657_SNP [dm6]	C	T	8.290e^-5	0.873	NON_SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
2L	8945213	2L_8945213_SNP [dm3] 2L_8945213_SNP [dm6]	T	C	8.302e^-5	0.873	INTRON C1GalTA	TF binding site mE1_TFBS_cad
3R	24863791	3R_24863791_SNP [dm3] 3R_29038069_SNP [dm6]	C	A	8.344e^-5	0.873	INTRON Slu7	TF binding site mE1_TFBS_sens
3L	12883596	3L_12883596_SNP [dm3] 3L_12890496_SNP [dm6]	C	T	8.377e^-5	0.873	UPSTREAM CR45748 INTRON CG43894
3L	12883597	3L_12883597_SNP [dm3] 3L_12890497_SNP [dm6]	G	A	8.377e^-5	0.873	UPSTREAM CR45748 INTRON CG43894
2L	7631175	2L_7631175_SNP [dm3] 2L_7631175_SNP [dm6]	C	A	8.522e^-5	0.873	INTERGENIC
2L	10723776	2L_10723776_SNP [dm3] 2L_10723776_SNP [dm6]	A	T	8.539e^-5	0.873	UPSTREAM CG6431 INTERGENIC
2L	12725735	2L_12725735_SNP [dm3] 2L_12725735_SNP [dm6]	C	T	8.628e^-5	0.873	SYNONYMOUS_CODING MRP
X	9803438	X_9803438_SNP [dm3] X_9909405_SNP [dm6]	G	A	8.629e^-5	0.873	UTR_3_PRIME CG1986
2R	10536054	2R_10536054_SNP [dm3] 2R_14648549_SNP [dm6]	C	G	8.636e^-5	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11302483	2L_11302483_INS [dm3] 2L_11302483_INS [dm6]	T	CAACTTCAGCGGCGATCCTG...	8.713e^-5	0.873	INTERGENIC
3R	24797725	3R_24797725_SNP [dm3] 3R_28972003_SNP [dm6]	T	C	8.757e^-5	0.873	EXON CR45669
2R	17924704	2R_17924704_SNP [dm3] 2R_22037199_SNP [dm6]	A	C	8.761e^-5	0.873	INTRON CG34370
2L	8059293	2L_8059293_SNP [dm3] 2L_8059293_SNP [dm6]	G	T	8.833e^-5	0.873	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7088676	2L_7088676_SNP [dm3] 2L_7088676_SNP [dm6]	T	A	8.839e^-5	0.873	INTERGENIC	transposable element FlyBase
2R	15213274	2R_15213274_SNP [dm3] 2R_19325769_SNP [dm6]	C	T	8.939e^-5	0.873	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17089495	3R_17089495_SNP [dm3] 3R_21263773_SNP [dm6]	A	G	8.945e^-5	0.873	DOWNSTREAM ETHR INTRON ETHR
2R	8447104	2R_8447104_SNP [dm3] 2R_12559599_SNP [dm6]	C	T	9.076e^-5	0.873	SYNONYMOUS_CODING fra
2R	13875645	2R_13875645_SNP [dm3] 2R_17988140_SNP [dm6]	T	C	9.127e^-5	0.873	INTRON dpr13
2L	6026096	2L_6026096_SNP [dm3] 2L_6026096_SNP [dm6]	G	A	9.150e^-5	0.873	INTRON CG9109
3L	2292149	3L_2292149_SNP [dm3] 3L_2292149_SNP [dm6]	T	G	9.210e^-5	0.873	INTRON MsR2
2R	14753589	2R_14753589_SNP [dm3] 2R_18866084_SNP [dm6]	C	A	9.234e^-5	0.873	NON_SYNONYMOUS_CODING Dpt UPSTREAM CG43071
2L	8548036	2L_8548036_SNP [dm3] 2L_8548036_SNP [dm6]	T	C	9.250e^-5	0.873	INTRON Sema-1a
2R	19399431	2R_19399431_SNP [dm3] 2R_23511908_SNP [dm6]	G	T	9.366e^-5	0.873	NON_SYNONYMOUS_CODING CG3906	TF binding site mE1_TFBS_cad
2L	7957859	2L_7957859_SNP [dm3] 2L_7957859_SNP [dm6]	A	T	9.373e^-5	0.873	INTRON Snoo
X	6965031	X_6965031_SNP [dm3] X_7070998_SNP [dm6]	T	C	9.404e^-5	0.873	INTRON CG4607
3R	24856529	3R_24856529_SNP [dm3] 3R_29030807_SNP [dm6]	A	G	9.437e^-5	0.873	UTR_3_PRIME CG1951 UPSTREAM CR45044 DOWNSTREAM Ssl2
3L	2351752	3L_2351752_SNP [dm3] 3L_2351752_SNP [dm6]	A	G	9.453e^-5	0.873	INTERGENIC
X	17976121	X_17976121_SNP [dm3] X_18082088_SNP [dm6]	G	A	9.454e^-5	0.873	SYNONYMOUS_CODING CG7536
2R	17924709	2R_17924709_SNP [dm3] 2R_22037204_SNP [dm6]	T	A	9.500e^-5	0.873	INTRON CG34370
3L	5781169	3L_5781169_SNP [dm3] 3L_5788069_SNP [dm6]	C	T	9.532e^-5	0.873	INTERGENIC
2R	16049394	2R_16049394_SNP [dm3] 2R_20161889_SNP [dm6]	G	T	9.561e^-5	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16545394	2R_16545394_SNP [dm3] 2R_20657889_SNP [dm6]	T	A	9.583e^-5	0.873	UPSTREAM tRNA:CR30155 DOWNSTREAM tRNA:CR30211 INTRON Lrt
2L	848341	2L_848341_SNP [dm3] 2L_848341_SNP [dm6]	C	A	9.680e^-5	0.873	INTRON drongo	TF binding site mE1_TFBS_sens
2R	19618799	2R_19618799_SNP [dm3] 2R_23731276_SNP [dm6]	G	T	9.752e^-5	0.873	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	7856556	2L_7856556_SNP [dm3] 2L_7856556_SNP [dm6]	G	A	9.763e^-5	0.873	UPSTREAM lectin-28C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17924701	2R_17924701_SNP [dm3] 2R_22037196_SNP [dm6]	A	G	9.890e^-5	0.873	INTRON CG34370
3L	1673072	3L_1673072_SNP [dm3] 3L_1673072_SNP [dm6]	G	C	9.891e^-5	0.873	UPSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_cad
X	2984321	X_2984321_SNP [dm3] X_3090288_SNP [dm6]	T	C	9.950e^-5	0.873	INTRON kirre
2L	13757214	2L_13757214_SNP [dm3] 2L_13757214_SNP [dm6]	T	C	9.973e^-5	0.873	DOWNSTREAM CR44846 INTRON TM9SF4
3R	19648432	3R_19648432_SNP [dm3] 3R_23822710_SNP [dm6]	C	A	1.017e^-4	0.873	INTRON CG34355
3L	11390032	3L_11390032_SNP [dm3] 3L_11396932_SNP [dm6]	C	T	1.020e^-4	0.873	UPSTREAM CG44362 INTERGENIC
2L	7829535	2L_7829535_SNP [dm3] 2L_7829535_SNP [dm6]	T	C	1.025e^-4	0.873	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16114574	2R_16114574_SNP [dm3] 2R_20227069_SNP [dm6]	A	T	1.027e^-4	0.873	INTERGENIC
3L	9303851	3L_9303851_DEL [dm3] 3L_9310751_DEL [dm6]	TT	T	1.029e^-4	0.873	INTERGENIC
3L	12883585	3L_12883585_SNP [dm3] 3L_12890485_SNP [dm6]	T	A	1.034e^-4	0.873	UPSTREAM CR45748 INTRON CG43894
3R	17358547	3R_17358547_SNP [dm3] 3R_21532825_SNP [dm6]	T	G	1.056e^-4	0.873	INTRON CR43372
3R	17358546	3R_17358546_SNP [dm3] 3R_21532824_SNP [dm6]	A	G	1.058e^-4	0.873	INTRON CR43372
2L	16628444	2L_16628444_SNP [dm3] 2L_16628444_SNP [dm6]	G	A	1.065e^-4	0.873	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	7829662	2L_7829662_SNP [dm3] 2L_7829662_SNP [dm6]	C	T	1.075e^-4	0.873	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	5561705	2R_5561705_SNP [dm3] 2R_9674200_SNP [dm6]	T	C	1.080e^-4	0.873	INTRON Mmp2
3L	11539460	3L_11539460_SNP [dm3] 3L_11546360_SNP [dm6]	C	T	1.085e^-4	0.873	INTRON Mob2
2L	8789650	2L_8789650_SNP [dm3] 2L_8789650_SNP [dm6]	T	C	1.087e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1076702	2R_1076702_SNP [dm3] 2R_5189197_SNP [dm6]	T	A	1.090e^-4	0.873	INTRON Nipped-A	transposable element FlyBase
2L	11666187	2L_11666187_SNP [dm3] 2L_11666187_SNP [dm6]	G	T	1.091e^-4	0.873	DOWNSTREAM CR44481 INTERGENIC
2L	2420375	2L_2420375_SNP [dm3] 2L_2420375_SNP [dm6]	A	T	1.098e^-4	0.873	UPSTREAM CG34447 & 1 other INTERGENIC
2R	15474983	2R_15474983_SNP [dm3] 2R_19587478_SNP [dm6]	A	T	1.102e^-4	0.873	SYNONYMOUS_CODING CG42878 INTRON sm
3L	1363173	3L_1363173_SNP [dm3] 3L_1363173_SNP [dm6]	G	A	1.116e^-4	0.873	INTRON Ptp61F
2R	14995276	2R_14995276_SNP [dm3] 2R_19107771_SNP [dm6]	G	A	1.118e^-4	0.873	INTRON 5-HT1A
2L	5070009	2L_5070009_SNP [dm3] 2L_5070009_SNP [dm6]	C	T	1.130e^-4	0.873	UPSTREAM RpL37A DOWNSTREAM CR45305 INTRON qtc
3L	8315903	3L_8315903_SNP [dm3] 3L_8322803_SNP [dm6]	C	T	1.137e^-4	0.873	DOWNSTREAM CG13670 INTERGENIC
3L	1363163	3L_1363163_SNP [dm3] 3L_1363163_SNP [dm6]	G	A	1.138e^-4	0.873	INTRON Ptp61F
2L	13796932	2L_13796932_SNP [dm3] 2L_13796932_SNP [dm6]	T	C	1.138e^-4	0.873	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
X	11667828	X_11667828_SNP [dm3] X_11773795_SNP [dm6]	T	A	1.143e^-4	0.873	INTRON dy
2L	1343257	2L_1343257_SNP [dm3] 2L_1343257_SNP [dm6]	G	A	1.158e^-4	0.873	DOWNSTREAM CG33922 INTERGENIC
3L	2790464	3L_2790464_SNP [dm3] 3L_2790464_SNP [dm6]	T	G	1.165e^-4	0.873	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16991231	X_16991231_SNP [dm3] X_17097198_SNP [dm6]	A	T	1.167e^-4	0.873	INTRON CG4991 & 1 other	TF binding site mE1_TFBS_sens
3L	11512236	3L_11512236_SNP [dm3] 3L_11519136_SNP [dm6]	A	G	1.171e^-4	0.873	SYNONYMOUS_CODING Fuca DOWNSTREAM CG7512
X	5549030	X_5549030_SNP [dm3] X_5654997_SNP [dm6]	G	A	1.172e^-4	0.873	SYNONYMOUS_CODING CG42265
3L	18099195	3L_18099195_SNP [dm3] 3L_18106095_SNP [dm6]	A	T	1.175e^-4	0.873	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25259088	3R_25259088_DEL [dm3] 3R_29433366_DEL [dm6]	AGGGA	A	1.185e^-4	0.873	INTRON Ptp99A
2R	3527902	2R_3527902_SNP [dm3] 2R_7640397_SNP [dm6]	C	T	1.186e^-4	0.873	SYNONYMOUS_CODING CG43340	TF binding site mE1_TFBS_cad
2L	20958231	2L_20958231_SNP [dm3] 2L_20958231_SNP [dm6]	T	A	1.187e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15749944	3R_15749944_SNP [dm3] 3R_19924222_SNP [dm6]	A	G	1.191e^-4	0.873	INTRON CG4462
2L	11305847	2L_11305847_SNP [dm3] 2L_11305847_SNP [dm6]	C	A	1.200e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
X	10988509	X_10988509_SNP [dm3] X_11094476_SNP [dm6]	A	G	1.210e^-4	0.873	UTR_3_PRIME CG2061 EXON CR45604
3R	26030795	3R_26030795_SNP [dm3] 3R_30205073_SNP [dm6]	A	G	1.213e^-4	0.873	INTERGENIC
2L	7620553	2L_7620553_DEL [dm3] 2L_7620553_DEL [dm6]	TA	T	1.220e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4165588	2L_4165588_INS [dm3] 2L_4165588_INS [dm6]	T	TTGCAGTTTAAGCTTTGC...	1.223e^-4	0.873	INTRON Or24a
2L	8967618	2L_8967618_SNP [dm3] 2L_8967618_SNP [dm6]	C	T	1.233e^-4	0.873	SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2L	12148522	2L_12148522_SNP [dm3] 2L_12148522_SNP [dm6]	G	A	1.234e^-4	0.873	INTRON CG31760
2L	8808587	2L_8808587_DEL [dm3] 2L_8808587_DEL [dm6]	ATCTTGA	A	1.235e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9962577	3L_9962577_SNP [dm3] 3L_9969477_SNP [dm6]	G	A	1.238e^-4	0.873	INTRON Nc	TF binding site mE1_TFBS_cad
2L	10867098	2L_10867098_SNP [dm3] 2L_10867098_SNP [dm6]	G	A	1.245e^-4	0.873	INTERGENIC
2L	7944750	2L_7944750_SNP [dm3] 2L_7944750_SNP [dm6]	A	G	1.246e^-4	0.873	INTRON Snoo
3R	26025496	3R_26025496_SNP [dm3] 3R_30199774_SNP [dm6]	C	T	1.259e^-4	0.873	INTRON CG9743
2R	15248383	2R_15248383_SNP [dm3] 2R_19360878_SNP [dm6]	T	C	1.265e^-4	0.873	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3668688	3L_3668688_SNP [dm3] 3L_3668688_SNP [dm6]	G	C	1.265e^-4	0.873	INTERGENIC
3R	19431888	3R_19431888_SNP [dm3] 3R_23606166_SNP [dm6]	T	G	1.268e^-4	0.873	UTR_3_PRIME CG31145 UPSTREAM CG10184 DOWNSTREAM CG31145
2L	16052621	2L_16052621_SNP [dm3] 2L_16052621_SNP [dm6]	A	C	1.269e^-4	0.873	INTRON beat-Ia
3R	22303311	3R_22303311_SNP [dm3] 3R_26477589_SNP [dm6]	C	A	1.270e^-4	0.873	SPLICE_SITE_REGION plum INTRON plum	TF binding site mE1_TFBS_inv
2L	20369899	2L_20369899_SNP [dm3] 2L_20369899_SNP [dm6]	T	A	1.273e^-4	0.873	INTERGENIC
2R	6027906	2R_6027906_SNP [dm3] 2R_10140401_SNP [dm6]	T	C	1.280e^-4	0.873	SYNONYMOUS_CODING Or46a UPSTREAM Or46a EXON CR43467
2R	16793008	2R_16793008_SNP [dm3] 2R_20905503_SNP [dm6]	A	G	1.281e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11687956	X_11687956_SNP [dm3] X_11793923_SNP [dm6]	C	A	1.283e^-4	0.873	INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_sens
3L	9962582	3L_9962582_SNP [dm3] 3L_9969482_SNP [dm6]	G	A	1.288e^-4	0.873	INTRON Nc	TF binding site mE1_TFBS_cad
3R	22808398	3R_22808398_SNP [dm3] 3R_26982676_SNP [dm6]	C	T	1.293e^-4	0.873	INTRON CG14253
3R	26050811	3R_26050811_SNP [dm3] 3R_30225089_SNP [dm6]	T	A	1.297e^-4	0.873	INTERGENIC
2R	13753490	2R_13753490_SNP [dm3] 2R_17865985_SNP [dm6]	C	T	1.301e^-4	0.873	UPSTREAM thr DOWNSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	24938247	3R_24938247_SNP [dm3] 3R_29112525_SNP [dm6]	A	G	1.304e^-4	0.873	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
2R	13753506	2R_13753506_SNP [dm3] 2R_17866001_SNP [dm6]	A	T	1.307e^-4	0.873	UPSTREAM thr DOWNSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18551006	2R_18551006_SNP [dm3] 2R_22663501_SNP [dm6]	C	G	1.310e^-4	0.873	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2L	19775435	2L_19775435_SNP [dm3] 2L_19775435_SNP [dm6]	C	G	1.311e^-4	0.873	UTR_3_PRIME CdGAPr DOWNSTREAM CdGAPr
X	7888700	X_7888700_SNP [dm3] X_7994667_SNP [dm6]	G	T	1.313e^-4	0.873	INTERGENIC
2L	8131557	2L_8131557_SNP [dm3] 2L_8131557_SNP [dm6]	C	T	1.315e^-4	0.873	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
2R	8757063	2R_8757063_SNP [dm3] 2R_12869558_SNP [dm6]	T	A	1.317e^-4	0.873	UPSTREAM bic & 1 other EXON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	1.318e^-4	0.873	INTRON fru	TF binding site BDTNP1_TFBS_da
2L	4824212	2L_4824212_SNP [dm3] 2L_4824212_SNP [dm6]	A	T	1.323e^-4	0.873	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	1219258	2R_1219258_SNP [dm3] 2R_5331753_SNP [dm6]	T	C	1.335e^-4	0.873	INTERGENIC	transposable element FlyBase
2R	17925648	2R_17925648_SNP [dm3] 2R_22038143_SNP [dm6]	T	C	1.340e^-4	0.873	INTRON CG34370
2R	12776061	2R_12776061_SNP [dm3] 2R_16888556_SNP [dm6]	G	A	1.341e^-4	0.873	INTRON CG8910
X	9803377	X_9803377_SNP [dm3] X_9909344_SNP [dm6]	T	A	1.342e^-4	0.873	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
2R	14752617	2R_14752617_SNP [dm3] 2R_18865112_SNP [dm6]	T	G	1.345e^-4	0.873	UPSTREAM Dpt DOWNSTREAM CG43070 INTRON CG43071
2R	19983960	2R_19983960_SNP [dm3] 2R_24096437_SNP [dm6]	G	A	1.357e^-4	0.873	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4806948	X_4806948_SNP [dm3] X_4912915_SNP [dm6]	T	A	1.361e^-4	0.873	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1589711	3L_1589711_SNP [dm3] 3L_1589711_SNP [dm6]	T	C	1.371e^-4	0.873	INTRON CG13917
2R	1219517	2R_1219517_SNP [dm3] 2R_5332012_SNP [dm6]	T	C	1.372e^-4	0.873	INTERGENIC	transposable element FlyBase
3R	26021430	3R_26021430_SNP [dm3] 3R_30195708_SNP [dm6]	C	T	1.374e^-4	0.873	DOWNSTREAM CG9743 INTRON CG15531
3L	4707492	3L_4707492_SNP [dm3] 3L_4707492_SNP [dm6]	C	T	1.391e^-4	0.873	INTRON RhoGEF64C
3L	1363177	3L_1363177_SNP [dm3] 3L_1363177_SNP [dm6]	T	A	1.391e^-4	0.873	INTRON Ptp61F
2L	15175615	2L_15175615_SNP [dm3] 2L_15175615_SNP [dm6]	A	C	1.392e^-4	0.873	INTRON CG4168
2L	7944847	2L_7944847_SNP [dm3] 2L_7944847_SNP [dm6]	T	C	1.392e^-4	0.873	INTRON Snoo
2L	10169685	2L_10169685_SNP [dm3] 2L_10169685_SNP [dm6]	A	T	1.393e^-4	0.873	INTRON CG44153
2L	7719935	2L_7719935_SNP [dm3] 2L_7719935_SNP [dm6]	G	A	1.398e^-4	0.873	SYNONYMOUS_CODING CG13794 UPSTREAM CG13793
3L	15184023	3L_15184023_SNP [dm3] 3L_15190923_SNP [dm6]	A	T	1.406e^-4	0.873	EXON CR44562
2R	11064095	2R_11064095_SNP [dm3] 2R_15176590_SNP [dm6]	T	C	1.414e^-4	0.873	INTRON igl
X	4806958	X_4806958_SNP [dm3] X_4912925_SNP [dm6]	T	C	1.435e^-4	0.873	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1601351	2R_1601351_SNP [dm3] 2R_5713846_SNP [dm6]	C	T	1.442e^-4	0.873	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3692526	2L_3692526_SNP [dm3] 2L_3692526_SNP [dm6]	G	T	1.450e^-4	0.873	SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
2L	3692527	2L_3692527_SNP [dm3] 2L_3692527_SNP [dm6]	A	G	1.450e^-4	0.873	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
2R	16114572	2R_16114572_SNP [dm3] 2R_20227067_SNP [dm6]	G	T	1.463e^-4	0.873	INTERGENIC
2R	11420223	2R_11420223_SNP [dm3] 2R_15532718_SNP [dm6]	A	G	1.466e^-4	0.873	UPSTREAM Khc-73 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13792113	2L_13792113_SNP [dm3] 2L_13792113_SNP [dm6]	T	A	1.468e^-4	0.873	NON_SYNONYMOUS_CODING CG16863	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	785926	2R_785926_SNP [dm3] 2R_4898421_SNP [dm6]	A	G	1.470e^-4	0.873	INTRON CG44102	TF binding site mE1_TFBS_HSA mE1_TFBS_sens transposable element FlyBase
2R	12316631	2R_12316631_SNP [dm3] 2R_16429126_SNP [dm6]	A	T	1.475e^-4	0.873	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2L	580962	2L_580962_SNP [dm3] 2L_580962_SNP [dm6]	A	G	1.477e^-4	0.873	INTERGENIC
2L	5455367	2L_5455367_SNP [dm3] 2L_5455367_SNP [dm6]	A	C	1.479e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3869652	2R_3869652_SNP [dm3] 2R_7982147_SNP [dm6]	T	G	1.480e^-4	0.873	INTRON ACC
2R	13272106	2R_13272106_SNP [dm3] 2R_17384601_SNP [dm6]	G	C	1.480e^-4	0.873	INTERGENIC
3L	5494985	3L_5494985_SNP [dm3] 3L_5501885_SNP [dm6]	C	T	1.485e^-4	0.873	UPSTREAM CR44519 INTERGENIC
3R	26018559	3R_26018559_SNP [dm3] 3R_30192837_SNP [dm6]	C	T	1.488e^-4	0.873	INTERGENIC
2L	4296635	2L_4296635_SNP [dm3] 2L_4296635_SNP [dm6]	G	A	1.491e^-4	0.873	INTRON tutl
2R	16758801	2R_16758801_SNP [dm3] 2R_20871296_SNP [dm6]	T	C	1.492e^-4	0.873	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	19887561	X_19887561_SNP [dm3] X_19993528_SNP [dm6]	G	T	1.501e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9773943	2L_9773943_SNP [dm3] 2L_9773943_SNP [dm6]	A	G	1.503e^-4	0.873	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
3L	6567356	3L_6567356_SNP [dm3] 3L_6574256_SNP [dm6]	T	C	1.506e^-4	0.873	INTRON CG18769 & 1 other
2L	6240466	2L_6240466_SNP [dm3] 2L_6240466_SNP [dm6]	A	T	1.507e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	26604264	3R_26604264_SNP [dm3] 3R_30778542_SNP [dm6]	A	T	1.510e^-4	0.873	INTRON zfh1
2L	848353	2L_848353_SNP [dm3] 2L_848353_SNP [dm6]	T	A	1.512e^-4	0.873	INTRON drongo	TF binding site mE1_TFBS_sens
2L	3635567	2L_3635567_SNP [dm3] 2L_3635567_SNP [dm6]	A	G	1.513e^-4	0.873	INTRON for
2L	3860882	2L_3860882_SNP [dm3] 2L_3860882_SNP [dm6]	G	C	1.515e^-4	0.873	DOWNSTREAM CR44078 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12085705	2R_12085705_SNP [dm3] 2R_16198200_SNP [dm6]	C	T	1.523e^-4	0.873	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5455445	2L_5455445_SNP [dm3] 2L_5455445_SNP [dm6]	G	T	1.523e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15750002	3R_15750002_SNP [dm3] 3R_19924280_SNP [dm6]	T	C	1.527e^-4	0.873	INTRON CG4462
3R	26080981	3R_26080981_SNP [dm3] 3R_30255259_SNP [dm6]	C	A	1.531e^-4	0.873	INTERGENIC
2R	17545626	2R_17545626_SNP [dm3] 2R_21658121_SNP [dm6]	A	T	1.546e^-4	0.873	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTRON CG10320	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9918419	2L_9918419_DEL [dm3] 2L_9918419_DEL [dm6]	TT	T	1.552e^-4	0.873	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12681104	2R_12681104_SNP [dm3] 2R_16793599_SNP [dm6]	C	A	1.552e^-4	0.873	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
2R	11986358	2R_11986358_SNP [dm3] 2R_16098853_SNP [dm6]	T	C	1.566e^-4	0.873	UPSTREAM mRpL34 & 1 other DOWNSTREAM CG8414 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7334229	2R_7334229_SNP [dm3] 2R_11446724_SNP [dm6]	T	A	1.567e^-4	0.873	INTRON qvr
2L	16615370	2L_16615370_SNP [dm3] 2L_16615370_SNP [dm6]	C	T	1.568e^-4	0.873	INTRON CG42389
3L	1711382	3L_1711382_SNP [dm3] 3L_1711382_SNP [dm6]	T	A	1.570e^-4	0.873	INTRON CG7991
3L	3146416	3L_3146416_SNP [dm3] 3L_3146416_SNP [dm6]	G	A	1.572e^-4	0.873	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo
3R	24217853	3R_24217853_SNP [dm3] 3R_28392131_SNP [dm6]	G	T	1.574e^-4	0.873	INTERGENIC
3L	1699420	3L_1699420_SNP [dm3] 3L_1699420_SNP [dm6]	C	T	1.586e^-4	0.873	INTRON CG7991	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	695106	3L_695106_SNP [dm3] 3L_695106_SNP [dm6]	G	A	1.599e^-4	0.873	INTRON CG13894	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17545556	2R_17545556_SNP [dm3] 2R_21658051_SNP [dm6]	G	A	1.600e^-4	0.873	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545559	2R_17545559_SNP [dm3] 2R_21658054_SNP [dm6]	G	C	1.600e^-4	0.873	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545568	2R_17545568_SNP [dm3] 2R_21658063_SNP [dm6]	A	G	1.600e^-4	0.873	UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17545583	2R_17545583_SNP [dm3] 2R_21658078_SNP [dm6]	C	T	1.600e^-4	0.873	UTR_5_PRIME CG10320 UPSTREAM CG10320 & 1 other DOWNSTREAM CG10082 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17545754	2R_17545754_SNP [dm3] 2R_21658249_SNP [dm6]	C	A	1.600e^-4	0.873	UTR_5_PRIME CG10320 UPSTREAM CG10320 DOWNSTREAM CG10082 & 1 other INTRON CG10320	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8065711	X_8065711_SNP [dm3] X_8171678_SNP [dm6]	A	G	1.624e^-4	0.873	SYNONYMOUS_CODING slpr
3R	23865305	3R_23865305_SNP [dm3] 3R_28039583_SNP [dm6]	C	G	1.630e^-4	0.873	INTRON CG34362
2R	17230695	2R_17230695_SNP [dm3] 2R_21343190_SNP [dm6]	C	A	1.644e^-4	0.873	SYNONYMOUS_CODING CG15666
2R	16114620	2R_16114620_SNP [dm3] 2R_20227115_SNP [dm6]	G	T	1.653e^-4	0.873	INTERGENIC
3R	25760601	3R_25760601_SNP [dm3] 3R_29934879_SNP [dm6]	G	A	1.654e^-4	0.873	SYNONYMOUS_CODING eIF2B-alpha DOWNSTREAM CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15248486	2R_15248486_SNP [dm3] 2R_19360981_SNP [dm6]	A	C	1.659e^-4	0.873	INTRON CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22812941	3R_22812941_SNP [dm3] 3R_26987219_SNP [dm6]	G	T	1.660e^-4	0.873	INTRON CG31075	TF binding site mE1_TFBS_cad
2R	18892127	2R_18892127_SNP [dm3] 2R_23004604_SNP [dm6]	C	T	1.660e^-4	0.873	INTRON twi
3R	14289008	3R_14289008_DEL [dm3] 3R_18463286_DEL [dm6]	TAGTTT	T	1.661e^-4	0.873	SPLICE_SITE_REGION fru INTRON fru
2L	10861896	2L_10861896_SNP [dm3] 2L_10861896_SNP [dm6]	T	A	1.664e^-4	0.873	UTR_3_PRIME Stam DOWNSTREAM CR43807
2R	17922521	2R_17922521_SNP [dm3] 2R_22035016_SNP [dm6]	T	C	1.666e^-4	0.873	SYNONYMOUS_CODING CG9308 INTRON CG34370
3L	18147224	3L_18147224_SNP [dm3] 3L_18154124_SNP [dm6]	G	C	1.669e^-4	0.873	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7056794	3L_7056794_SNP [dm3] 3L_7063694_SNP [dm6]	G	A	1.671e^-4	0.873	INTRON CG8641
X	20028096	X_20028096_DEL [dm3] X_20134063_DEL [dm6]	CTGA	C	1.674e^-4	0.873	INTRON CG15322
2L	5455378	2L_5455378_SNP [dm3] 2L_5455378_SNP [dm6]	A	G	1.677e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11628555	3L_11628555_SNP [dm3] 3L_11635455_SNP [dm6]	C	T	1.680e^-4	0.873	INTRON CG32091
3R	17358565	3R_17358565_DEL [dm3] 3R_21532843_DEL [dm6]	TGATGGCTGTAGA...	T	1.690e^-4	0.873	INTRON CR43372
2R	8435621	2R_8435621_SNP [dm3] 2R_12548116_SNP [dm6]	A	C	1.691e^-4	0.873	INTRON fra	TF binding site mE1_TFBS_cad
2R	17002092	2R_17002092_SNP [dm3] 2R_21114587_SNP [dm6]	G	A	1.696e^-4	0.873	INTRON ktub
3R	23917068	3R_23917068_SNP [dm3] 3R_28091346_SNP [dm6]	C	T	1.696e^-4	0.873	DOWNSTREAM CG34362 INTERGENIC
3R	22813708	3R_22813708_SNP [dm3] 3R_26987986_SNP [dm6]	T	C	1.699e^-4	0.873	UPSTREAM CG31075 INTRON CG31075
2R	8467604	2R_8467604_SNP [dm3] 2R_12580099_SNP [dm6]	A	T	1.700e^-4	0.873	INTRON Sin3A
X	13966999	X_13966999_SNP [dm3] X_14072966_SNP [dm6]	A	C	1.703e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	20137085	2L_20137085_SNP [dm3] 2L_20137085_SNP [dm6]	T	C	1.715e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14614937	X_14614937_SNP [dm3] X_14720904_SNP [dm6]	G	A	1.721e^-4	0.873	INTRON NetB
2L	1470108	2L_1470108_SNP [dm3] 2L_1470108_SNP [dm6]	C	G	1.722e^-4	0.873	INTERGENIC
3R	14012559	3R_14012559_SNP [dm3] 3R_18186837_SNP [dm6]	G	A	1.726e^-4	0.873	SYNONYMOUS_CODING Arp5 DOWNSTREAM CG12321	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	5900852	2L_5900852_SNP [dm3] 2L_5900852_SNP [dm6]	A	C	1.733e^-4	0.873	UPSTREAM CR44579 INTERGENIC
X	14614863	X_14614863_SNP [dm3] X_14720830_SNP [dm6]	G	A	1.736e^-4	0.873	INTRON NetB
2L	11666234	2L_11666234_SNP [dm3] 2L_11666234_SNP [dm6]	T	A	1.737e^-4	0.873	DOWNSTREAM CR44481 INTERGENIC
2L	17743413	2L_17743413_SNP [dm3] 2L_17743413_SNP [dm6]	G	T	1.742e^-4	0.873	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2418233	3L_2418233_SNP [dm3] 3L_2418233_SNP [dm6]	A	G	1.750e^-4	0.873	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18550983	2R_18550983_SNP [dm3] 2R_22663478_SNP [dm6]	A	G	1.755e^-4	0.873	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
3L	9430908	3L_9430908_SNP [dm3] 3L_9437808_SNP [dm6]	T	G	1.759e^-4	0.873	SYNONYMOUS_CODING MTF-1 DOWNSTREAM Bet3 INTRON MTF-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14020261	3R_14020261_SNP [dm3] 3R_18194539_SNP [dm6]	C	T	1.765e^-4	0.873	UTR_3_PRIME Ssdp DOWNSTREAM Ssdp
2R	15248394	2R_15248394_SNP [dm3] 2R_19360889_SNP [dm6]	T	C	1.765e^-4	0.873	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19509678	2R_19509678_SNP [dm3] 2R_23622155_SNP [dm6]	A	T	1.772e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12720955	2L_12720955_DEL [dm3] 2L_12720955_DEL [dm6]	ATAGTTAAGTGCAA...	A	1.778e^-4	0.873	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	26030389	3R_26030389_SNP [dm3] 3R_30204667_SNP [dm6]	T	C	1.792e^-4	0.873	INTERGENIC
2L	17212431	2L_17212431_SNP [dm3] 2L_17212431_SNP [dm6]	C	T	1.794e^-4	0.873	INTRON beat-IIIc
2L	7621802	2L_7621802_SNP [dm3] 2L_7621802_SNP [dm6]	C	T	1.795e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8451333	2R_8451333_SNP [dm3] 2R_12563828_SNP [dm6]	T	C	1.795e^-4	0.873	UTR_3_PRIME fra DOWNSTREAM CG33775
2R	12670084	2R_12670084_SNP [dm3] 2R_16782579_SNP [dm6]	T	C	1.799e^-4	0.873	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8822651	2R_8822651_SNP [dm3] 2R_12935146_SNP [dm6]	A	C	1.809e^-4	0.873	INTRON CG13322	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	13883478	2L_13883478_SNP [dm3] 2L_13883478_SNP [dm6]	A	C	1.820e^-4	0.873	INTRON CenG1A
2L	5455370	2L_5455370_SNP [dm3] 2L_5455370_SNP [dm6]	A	T	1.827e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8019397	X_8019397_MNP [dm3] X_8125364_MNP [dm6]	TTTA	GCGG	1.833e^-4	0.873	INTRON cyr	TF binding site BDTNP1_TFBS_dl
3L	2417964	3L_2417964_SNP [dm3] 3L_2417964_SNP [dm6]	G	C	1.835e^-4	0.873	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7620571	2L_7620571_SNP [dm3] 2L_7620571_SNP [dm6]	T	G	1.846e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17486441	2R_17486441_SNP [dm3] 2R_21598936_SNP [dm6]	A	G	1.848e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1711471	3L_1711471_SNP [dm3] 3L_1711471_SNP [dm6]	A	G	1.848e^-4	0.873	INTRON CG7991
2R	19451628	2R_19451628_SNP [dm3] 2R_23564105_SNP [dm6]	T	A	1.852e^-4	0.873	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7088772	2L_7088772_SNP [dm3] 2L_7088772_SNP [dm6]	A	T	1.853e^-4	0.873	INTERGENIC	transposable element FlyBase
3R	10807334	3R_10807334_DEL [dm3] 3R_14981612_DEL [dm6]	AA	A	1.853e^-4	0.873	INTERGENIC
2L	4961021	2L_4961021_SNP [dm3] 2L_4961021_SNP [dm6]	G	A	1.854e^-4	0.873	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14893989	2L_14893989_SNP [dm3] 2L_14893989_SNP [dm6]	C	T	1.863e^-4	0.873	INTERGENIC
3L	6567363	3L_6567363_INS [dm3] 3L_6574263_INS [dm6]	T	TCTCTCTTT	1.879e^-4	0.873	INTRON CG18769 & 1 other
2L	11937868	2L_11937868_SNP [dm3] 2L_11937868_SNP [dm6]	G	A	1.881e^-4	0.873	UPSTREAM Or33c DOWNSTREAM Or33b INTERGENIC	TF binding site mE1_TFBS_cad
3L	1363178	3L_1363178_INS [dm3] 3L_1363178_INS [dm6]	A	ATGGGCACCTAATTACTTTG...	1.884e^-4	0.873	INTRON Ptp61F
2R	18270184	2R_18270184_SNP [dm3] 2R_22382679_SNP [dm6]	A	C	1.893e^-4	0.873	UPSTREAM CG13506 DOWNSTREAM wrapper INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17358552	3R_17358552_SNP [dm3] 3R_21532830_SNP [dm6]	T	C	1.898e^-4	0.873	INTRON CR43372
2R	12998386	2R_12998386_SNP [dm3] 2R_17110881_SNP [dm6]	A	T	1.899e^-4	0.873	INTRON CG15611	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26017576	3R_26017576_SNP [dm3] 3R_30191854_SNP [dm6]	A	C	1.900e^-4	0.873	UPSTREAM CG9747 INTERGENIC
2L	3752133	2L_3752133_SNP [dm3] 2L_3752133_SNP [dm6]	A	G	1.900e^-4	0.873	SYNONYMOUS_CODING CG10019
2L	4136662	2L_4136662_SNP [dm3] 2L_4136662_SNP [dm6]	G	T	1.905e^-4	0.873	INTERGENIC
3R	14289015	3R_14289015_SNP [dm3] 3R_18463293_SNP [dm6]	C	T	1.910e^-4	0.873	INTRON fru
2L	17212144	2L_17212144_SNP [dm3] 2L_17212144_SNP [dm6]	T	A	1.917e^-4	0.873	INTRON beat-IIIc
3L	16282567	3L_16282567_SNP [dm3] 3L_16289467_SNP [dm6]	A	T	1.917e^-4	0.873	DOWNSTREAM CG13045 INTERGENIC	transposable element FlyBase
2L	5267659	2L_5267659_SNP [dm3] 2L_5267659_SNP [dm6]	T	G	1.919e^-4	0.873	SYNONYMOUS_CODING Cyp4ac2 UPSTREAM Cyp4ac3 INTRON tkv
3R	17358551	3R_17358551_SNP [dm3] 3R_21532829_SNP [dm6]	A	C	1.921e^-4	0.873	INTRON CR43372
2L	10686277	2L_10686277_SNP [dm3] 2L_10686277_SNP [dm6]	A	T	1.925e^-4	0.873	UTR_3_PRIME CG7296 DOWNSTREAM CG7296
3R	24727291	3R_24727291_SNP [dm3] 3R_28901569_SNP [dm6]	A	G	1.931e^-4	0.873	UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10838038	2R_10838038_SNP [dm3] 2R_14950533_SNP [dm6]	G	T	1.937e^-4	0.873	UPSTREAM aPKC INTRON aPKC
2R	15248382	2R_15248382_SNP [dm3] 2R_19360877_SNP [dm6]	T	C	1.946e^-4	0.873	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17368817	X_17368817_SNP [dm3] X_17474784_SNP [dm6]	C	T	1.950e^-4	0.873	INTRON CG43658
2R	8446927	2R_8446927_SNP [dm3] 2R_12559422_SNP [dm6]	A	G	1.952e^-4	0.873	INTRON fra
3L	19968271	3L_19968271_SNP [dm3] 3L_19975171_SNP [dm6]	T	C	1.957e^-4	0.873	INTRON Ac76E
2R	18270183	2R_18270183_SNP [dm3] 2R_22382678_SNP [dm6]	A	T	1.960e^-4	0.873	UPSTREAM CG13506 DOWNSTREAM wrapper INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9474199	2L_9474199_SNP [dm3] 2L_9474199_SNP [dm6]	C	T	1.961e^-4	0.873	INTERGENIC
3R	26020799	3R_26020799_SNP [dm3] 3R_30195077_SNP [dm6]	A	C	1.965e^-4	0.873	NON_SYNONYMOUS_CODING CG15531
2L	11309170	2L_11309170_SNP [dm3] 2L_11309170_SNP [dm6]	C	T	1.967e^-4	0.873	INTERGENIC
2R	18476095	2R_18476095_SNP [dm3] 2R_22588590_SNP [dm6]	G	A	1.971e^-4	0.873	INTRON dnr1
2L	3572177	2L_3572177_SNP [dm3] 2L_3572177_SNP [dm6]	G	C	1.998e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19101233	2L_19101233_INS [dm3] 2L_19101233_INS [dm6]	A	AA	2.010e^-4	0.873	UPSTREAM CG17344 & 1 other INTRON Lim3
2L	20322205	2L_20322205_SNP [dm3] 2L_20322205_SNP [dm6]	A	T	2.014e^-4	0.873	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10151074	3L_10151074_SNP [dm3] 3L_10157974_SNP [dm6]	C	A	2.020e^-4	0.873	INTRON dpr10
2L	11221253	2L_11221253_DEL [dm3] 2L_11221253_DEL [dm6]	CC	C	2.027e^-4	0.873	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19857675	X_19857675_DEL [dm3] X_19963642_DEL [dm6]	CTGAAAACCCAAGGCATATC...	C	2.027e^-4	0.873	INTRON Nep3
3L	1350297	3L_1350297_SNP [dm3] 3L_1350297_SNP [dm6]	A	C	2.030e^-4	0.873	UPSTREAM Ptp61F & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14226537	2R_14226537_INS [dm3] 2R_18339032_INS [dm6]	C	CAGCCC	2.032e^-4	0.873	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	22188440	3R_22188440_INS [dm3] 3R_26362718_INS [dm6]	C	CA	2.034e^-4	0.873	DOWNSTREAM CG33970 INTERGENIC
3L	2418229	3L_2418229_SNP [dm3] 3L_2418229_SNP [dm6]	T	A	2.046e^-4	0.873	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3493299	3L_3493299_SNP [dm3] 3L_3493299_SNP [dm6]	G	A	2.047e^-4	0.873	INTRON CG42324	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8447115	2R_8447115_SNP [dm3] 2R_12559610_SNP [dm6]	T	C	2.053e^-4	0.873	SYNONYMOUS_CODING fra
3R	19070239	3R_19070239_SNP [dm3] 3R_23244517_SNP [dm6]	A	G	2.054e^-4	0.873	INTRON CG4467
3L	19961322	3L_19961322_SNP [dm3] 3L_19968222_SNP [dm6]	A	G	2.055e^-4	0.873	INTRON Ac76E
2L	2420370	2L_2420370_SNP [dm3] 2L_2420370_SNP [dm6]	T	G	2.056e^-4	0.873	UPSTREAM CG34447 & 1 other INTERGENIC
3R	26018638	3R_26018638_SNP [dm3] 3R_30192916_SNP [dm6]	C	A	2.061e^-4	0.873	INTERGENIC
2R	12644200	2R_12644200_SNP [dm3] 2R_16756695_SNP [dm6]	A	T	2.064e^-4	0.873	SYNONYMOUS_CODING unc-104 DOWNSTREAM CG5267	TF binding site BDTNP1_TFBS_sna
X	16773060	X_16773060_SNP [dm3] X_16879027_SNP [dm6]	G	A	2.069e^-4	0.873	INTERGENIC
2R	3529181	2R_3529181_SNP [dm3] 2R_7641676_SNP [dm6]	C	A	2.076e^-4	0.873	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
2R	18182284	2R_18182284_SNP [dm3] 2R_22294779_SNP [dm6]	C	T	2.080e^-4	0.873	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_sens
3R	22318071	3R_22318071_SNP [dm3] 3R_26492349_SNP [dm6]	C	A	2.093e^-4	0.873	INTRON plum
3L	10951316	3L_10951316_SNP [dm3] 3L_10958216_SNP [dm6]	A	T	2.094e^-4	0.873	INTERGENIC
2R	8453950	2R_8453950_SNP [dm3] 2R_12566445_SNP [dm6]	G	T	2.097e^-4	0.873	NON_SYNONYMOUS_CODING Cyp301a1	TF binding site mE1_TFBS_HSA
3L	13663710	3L_13663710_SNP [dm3] 3L_13670610_SNP [dm6]	G	C	2.098e^-4	0.873	INTRON bru-3
2R	15248397	2R_15248397_SNP [dm3] 2R_19360892_SNP [dm6]	C	T	2.104e^-4	0.873	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8446983	2R_8446983_DEL [dm3] 2R_12559478_DEL [dm6]	AA	A	2.108e^-4	0.873	INTRON fra
3L	10039434	3L_10039434_SNP [dm3] 3L_10046334_SNP [dm6]	A	G	2.112e^-4	0.873	INTRON dpr6
X	19864266	X_19864266_SNP [dm3] X_19970233_SNP [dm6]	C	G	2.114e^-4	0.873	DOWNSTREAM Nep3 INTERGENIC
3L	7106567	3L_7106567_SNP [dm3] 3L_7113467_SNP [dm6]	G	A	2.120e^-4	0.873	INTRON form3
2R	13753410	2R_13753410_INS [dm3] 2R_17865905_INS [dm6]	T	TT	2.121e^-4	0.873	UTR_5_PRIME thr DOWNSTREAM Mapmodulin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	8467613	2R_8467613_SNP [dm3] 2R_12580108_SNP [dm6]	T	C	2.122e^-4	0.873	SPLICE_SITE_REGION Sin3A INTRON Sin3A
3R	18598206	3R_18598206_DEL [dm3] 3R_22772484_DEL [dm6]	ATTATTTAAA	A	2.123e^-4	0.873	UPSTREAM CG43095 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
2R	8446950	2R_8446950_SNP [dm3] 2R_12559445_SNP [dm6]	G	T	2.129e^-4	0.873	INTRON fra
3L	12472001	3L_12472001_SNP [dm3] 3L_12478901_SNP [dm6]	T	G	2.139e^-4	0.873	INTRON CG10663
2L	7088704	2L_7088704_SNP [dm3] 2L_7088704_SNP [dm6]	C	G	2.145e^-4	0.873	INTERGENIC	transposable element FlyBase
3L	8523531	3L_8523531_SNP [dm3] 3L_8530431_SNP [dm6]	T	A	2.146e^-4	0.873	INTRON foi	TF binding site mE1_TFBS_cad
2L	8449097	2L_8449097_SNP [dm3] 2L_8449097_SNP [dm6]	C	T	2.147e^-4	0.873	SPLICE_SITE_REGION U26 SYNONYMOUS_CODING U26 DOWNSTREAM fu12
2R	11041727	2R_11041727_SNP [dm3] 2R_15154222_SNP [dm6]	A	T	2.149e^-4	0.873	INTERGENIC
2L	4078242	2L_4078242_SNP [dm3] 2L_4078242_SNP [dm6]	T	G	2.156e^-4	0.873	INTRON ed
3R	17358559	3R_17358559_SNP [dm3] 3R_21532837_SNP [dm6]	T	G	2.162e^-4	0.873	INTRON CR43372
2R	3521030	2R_3521030_SNP [dm3] 2R_7633525_SNP [dm6]	T	G	2.163e^-4	0.873	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131
3R	26023960	3R_26023960_SNP [dm3] 3R_30198238_SNP [dm6]	T	G	2.178e^-4	0.873	INTRON CG9743
2R	16013051	2R_16013051_SNP [dm3] 2R_20125546_SNP [dm6]	C	A	2.186e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4056278	2L_4056278_SNP [dm3] 2L_4056278_SNP [dm6]	G	T	2.201e^-4	0.873	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	16166250	2L_16166250_SNP [dm3] 2L_16166250_SNP [dm6]	G	A	2.202e^-4	0.873	UTR_5_PRIME Ca-alpha1D
2L	3860884	2L_3860884_SNP [dm3] 2L_3860884_SNP [dm6]	C	T	2.218e^-4	0.873	DOWNSTREAM CR44078 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6681685	3L_6681685_SNP [dm3] 3L_6688585_SNP [dm6]	T	C	2.224e^-4	0.873	DOWNSTREAM SP1173 INTERGENIC
2L	7960585	2L_7960585_SNP [dm3] 2L_7960585_SNP [dm6]	T	C	2.226e^-4	0.873	INTRON Snoo
2L	3635565	2L_3635565_SNP [dm3] 2L_3635565_SNP [dm6]	A	T	2.233e^-4	0.873	INTRON for
2L	20070325	2L_20070325_SNP [dm3] 2L_20070325_SNP [dm6]	T	C	2.235e^-4	0.873	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13964375	X_13964375_SNP [dm3] X_14070342_SNP [dm6]	C	T	2.252e^-4	0.873	UPSTREAM tRNA:S474:12Eh INTERGENIC
2L	9410259	2L_9410259_SNP [dm3] 2L_9410259_SNP [dm6]	C	T	2.252e^-4	0.873	INTRON Shawl
2R	15688565	2R_15688565_SNP [dm3] 2R_19801060_SNP [dm6]	C	T	2.255e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18821354	2R_18821354_SNP [dm3] 2R_22933831_SNP [dm6]	A	G	2.256e^-4	0.873	UTR_5_PRIME CG3788 UPSTREAM CG3788 DOWNSTREAM CG3800	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10768189	3L_10768189_SNP [dm3] 3L_10775089_SNP [dm6]	T	A	2.267e^-4	0.873	INTERGENIC
2R	1033261	2R_1033261_DEL [dm3] 2R_5145756_DEL [dm6]	AA	A	2.279e^-4	0.873	INTRON Atf6
3R	15749918	3R_15749918_SNP [dm3] 3R_19924196_SNP [dm6]	A	C	2.282e^-4	0.873	INTRON CG4462
2L	15521389	2L_15521389_SNP [dm3] 2L_15521389_SNP [dm6]	A	G	2.289e^-4	0.873	UPSTREAM CR43761 INTERGENIC
2L	11666189	2L_11666189_SNP [dm3] 2L_11666189_SNP [dm6]	A	T	2.300e^-4	0.873	DOWNSTREAM CR44481 INTERGENIC
2R	17924838	2R_17924838_SNP [dm3] 2R_22037333_SNP [dm6]	A	G	2.302e^-4	0.873	INTRON CG34370
2L	9777436	2L_9777436_SNP [dm3] 2L_9777436_SNP [dm6]	A	C	2.310e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16564658	X_16564658_SNP [dm3] X_16670625_SNP [dm6]	G	C	2.313e^-4	0.873	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9981354	2L_9981354_INS [dm3] 2L_9981354_INS [dm6]	G	CGGTT	2.316e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	1362261	2L_1362261_SNP [dm3] 2L_1362261_SNP [dm6]	A	C	2.323e^-4	0.873	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24938695	3R_24938695_SNP [dm3] 3R_29112973_SNP [dm6]	A	C	2.325e^-4	0.873	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12670067	2R_12670067_SNP [dm3] 2R_16782562_SNP [dm6]	A	G	2.332e^-4	0.873	NON_SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21283609	3R_21283609_SNP [dm3] 3R_25457887_SNP [dm6]	G	C	2.334e^-4	0.873	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
2R	16114548	2R_16114548_SNP [dm3] 2R_20227043_SNP [dm6]	A	G	2.340e^-4	0.873	INTERGENIC
2L	6026092	2L_6026092_SNP [dm3] 2L_6026092_SNP [dm6]	A	T	2.344e^-4	0.873	INTRON CG9109
3L	14926057	3L_14926057_SNP [dm3] 3L_14932957_SNP [dm6]	T	G	2.348e^-4	0.873	INTRON DCX-EMAP
3R	24938469	3R_24938469_SNP [dm3] 3R_29112747_SNP [dm6]	A	T	2.353e^-4	0.873	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3R	24938561	3R_24938561_SNP [dm3] 3R_29112839_SNP [dm6]	C	T	2.353e^-4	0.873	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15841805	2R_15841805_SNP [dm3] 2R_19954300_SNP [dm6]	C	A	2.358e^-4	0.873	NON_SYNONYMOUS_CODING CG44622
3L	2620595	3L_2620595_SNP [dm3] 3L_2620595_SNP [dm6]	T	C	2.360e^-4	0.873	INTRON Pxn
3R	25759311	3R_25759311_SNP [dm3] 3R_29933589_SNP [dm6]	C	T	2.363e^-4	0.873	UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha INTRON CG42557 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14078553	3R_14078553_SNP [dm3] 3R_18252831_SNP [dm6]	A	T	2.370e^-4	0.873	UPSTREAM CG12320 DOWNSTREAM Rpb4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9415607	2L_9415607_SNP [dm3] 2L_9415607_SNP [dm6]	A	G	2.370e^-4	0.873	UPSTREAM Shawl & 1 other INTERGENIC
X	8955803	X_8955803_SNP [dm3] X_9061770_SNP [dm6]	A	T	2.371e^-4	0.873	UPSTREAM CG15365 INTRON CG15365
2L	7959072	2L_7959072_SNP [dm3] 2L_7959072_SNP [dm6]	T	A	2.381e^-4	0.873	INTRON Snoo
2R	10324237	2R_10324237_SNP [dm3] 2R_14436732_SNP [dm6]	G	A	2.382e^-4	0.873	INTRON Oaz
3R	16165421	3R_16165421_SNP [dm3] 3R_20339699_SNP [dm6]	A	G	2.391e^-4	0.873	INTRON Ir92a
3L	18605763	3L_18605763_SNP [dm3] 3L_18612663_SNP [dm6]	A	C	2.394e^-4	0.873	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3L	18605767	3L_18605767_SNP [dm3] 3L_18612667_SNP [dm6]	G	C	2.394e^-4	0.873	NON_SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3R	23040626	3R_23040626_SNP [dm3] 3R_27214904_SNP [dm6]	G	A	2.396e^-4	0.873	INTERGENIC
2L	10394480	2L_10394480_SNP [dm3] 2L_10394480_SNP [dm6]	A	C	2.409e^-4	0.873	SYNONYMOUS_CODING Mdh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14449740	2L_14449740_SNP [dm3] 2L_14449740_SNP [dm6]	T	A	2.418e^-4	0.873	UPSTREAM CR45726 DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	5596700	2L_5596700_SNP [dm3] 2L_5596700_SNP [dm6]	A	T	2.420e^-4	0.873	UPSTREAM CG18266 INTERGENIC
2R	17794921	2R_17794921_SNP [dm3] 2R_21907416_SNP [dm6]	A	G	2.420e^-4	0.873	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4189216	2R_4189216_SNP [dm3] 2R_8301711_SNP [dm6]	T	C	2.423e^-4	0.873	INTERGENIC
X	16258329	X_16258329_SNP [dm3] X_16364296_SNP [dm6]	T	C	2.434e^-4	0.873	SYNONYMOUS_CODING nonA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16708242	3R_16708242_SNP [dm3] 3R_20882520_SNP [dm6]	C	G	2.444e^-4	0.873	INTERGENIC
3R	16145260	3R_16145260_SNP [dm3] 3R_20319538_SNP [dm6]	A	C	2.450e^-4	0.873	INTRON CG42668
X	12088603	X_12088603_SNP [dm3] X_12194570_SNP [dm6]	G	A	2.451e^-4	0.873	INTRON Ten-a
2L	1362170	2L_1362170_SNP [dm3] 2L_1362170_SNP [dm6]	T	A	2.464e^-4	0.873	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad
3R	26019493	3R_26019493_SNP [dm3] 3R_30193771_SNP [dm6]	A	G	2.464e^-4	0.873	INTERGENIC
2R	9123802	2R_9123802_SNP [dm3] 2R_13236297_SNP [dm6]	T	G	2.464e^-4	0.873	DOWNSTREAM CG4679 INTRON CG4676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23901758	3R_23901758_DEL [dm3] 3R_28076036_DEL [dm6]	TCGCCAGAAGCGAGGGAGGG...	T	2.469e^-4	0.873	INTRON CG34362	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8789461	2L_8789461_SNP [dm3] 2L_8789461_SNP [dm6]	T	A	2.470e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16013041	2R_16013041_SNP [dm3] 2R_20125536_SNP [dm6]	A	G	2.472e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26017317	3R_26017317_SNP [dm3] 3R_30191595_SNP [dm6]	A	G	2.484e^-4	0.873	UPSTREAM CG9747 INTERGENIC
2R	12295261	2R_12295261_SNP [dm3] 2R_16407756_SNP [dm6]	C	T	2.488e^-4	0.873	INTRON Sema-2b
2R	8455925	2R_8455925_SNP [dm3] 2R_12568420_SNP [dm6]	C	T	2.496e^-4	0.873	SYNONYMOUS_CODING Cyp301a1 DOWNSTREAM Ak6
3L	13434558	3L_13434558_SNP [dm3] 3L_13441458_SNP [dm6]	A	G	2.496e^-4	0.873	UPSTREAM CG10140 INTRON CG14109	TF binding site mE1_TFBS_HSA
2L	16303852	2L_16303852_SNP [dm3] 2L_16303852_SNP [dm6]	C	T	2.497e^-4	0.873	SYNONYMOUS_CODING c_2_M UPSTREAM CG5869
3L	9563360	3L_9563360_SNP [dm3] 3L_9570260_SNP [dm6]	G	A	2.498e^-4	0.873	INTRON CG42673
3L	4263782	3L_4263782_SNP [dm3] 3L_4263782_SNP [dm6]	C	T	2.507e^-4	0.873	UTR_5_PRIME CG1273 DOWNSTREAM VhaM9.7-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7088875	2L_7088875_SNP [dm3] 2L_7088875_SNP [dm6]	A	T	2.512e^-4	0.873	INTERGENIC
3R	10504853	3R_10504853_SNP [dm3] 3R_14679131_SNP [dm6]	A	T	2.512e^-4	0.873	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	16564701	X_16564701_DEL [dm3] X_16670668_DEL [dm6]	CCAAATCGGTTT...	C	2.512e^-4	0.873	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11302671	2L_11302671_SNP [dm3] 2L_11302671_SNP [dm6]	G	A	2.518e^-4	0.873	INTERGENIC
2L	7960518	2L_7960518_SNP [dm3] 2L_7960518_SNP [dm6]	T	C	2.521e^-4	0.873	INTRON Snoo
3L	15488772	3L_15488772_SNP [dm3] 3L_15495672_SNP [dm6]	G	A	2.521e^-4	0.873	UPSTREAM CG12355 & 1 other INTERGENIC
2L	11305647	2L_11305647_SNP [dm3] 2L_11305647_SNP [dm6]	G	A	2.521e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
2L	11305648	2L_11305648_SNP [dm3] 2L_11305648_SNP [dm6]	T	C	2.521e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
X	16564695	X_16564695_DEL [dm3] X_16670662_DEL [dm6]	AAT	A	2.528e^-4	0.873	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12786452	2R_12786452_INS [dm3] 2R_16898947_INS [dm6]	T	TT	2.535e^-4	0.873	INTRON inaC
3R	22808428	3R_22808428_SNP [dm3] 3R_26982706_SNP [dm6]	A	T	2.543e^-4	0.873	INTRON CG14253
2L	7089108	2L_7089108_SNP [dm3] 2L_7089108_SNP [dm6]	A	T	2.547e^-4	0.873	INTERGENIC
3R	17380952	3R_17380952_SNP [dm3] 3R_21555230_SNP [dm6]	C	T	2.549e^-4	0.873	INTRON slou
X	15795311	X_15795311_SNP [dm3] X_15901278_SNP [dm6]	C	T	2.552e^-4	0.873	INTRON shi
X	17686762	X_17686762_SNP [dm3] X_17792729_SNP [dm6]	C	G	2.556e^-4	0.873	INTRON OdsH
2L	20946148	2L_20946148_SNP [dm3] 2L_20946148_SNP [dm6]	C	T	2.557e^-4	0.873	DOWNSTREAM CR44606 INTERGENIC
2L	5492606	2L_5492606_SNP [dm3] 2L_5492606_SNP [dm6]	T	G	2.558e^-4	0.873	INTERGENIC
2R	15213486	2R_15213486_SNP [dm3] 2R_19325981_SNP [dm6]	G	A	2.561e^-4	0.873	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
3L	9962594	3L_9962594_SNP [dm3] 3L_9969494_SNP [dm6]	G	A	2.565e^-4	0.873	INTRON Nc
2R	18399784	2R_18399784_SNP [dm3] 2R_22512279_SNP [dm6]	T	A	2.567e^-4	0.873	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3572181	2L_3572181_SNP [dm3] 2L_3572181_SNP [dm6]	C	G	2.569e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6571470	3L_6571470_SNP [dm3] 3L_6578370_SNP [dm6]	G	T	2.591e^-4	0.873	INTRON CG18769 & 1 other
2L	534985	2L_534985_SNP [dm3] 2L_534985_SNP [dm6]	G	A	2.602e^-4	0.873	INTRON ush
3R	26025879	3R_26025879_SNP [dm3] 3R_30200157_SNP [dm6]	T	G	2.616e^-4	0.873	INTRON CG9743
2L	2694065	2L_2694065_SNP [dm3] 2L_2694065_SNP [dm6]	T	C	2.630e^-4	0.873	INTRON CG31690
2L	10829794	2L_10829794_SNP [dm3] 2L_10829794_SNP [dm6]	G	A	2.631e^-4	0.873	INTRON Nos
X	7677045	X_7677045_SNP [dm3] X_7783012_SNP [dm6]	G	A	2.635e^-4	0.873	INTERGENIC
X	9971828	X_9971828_SNP [dm3] X_10077795_SNP [dm6]	T	A	2.637e^-4	0.873	INTRON ZAP3
2R	1031029	2R_1031029_SNP [dm3] 2R_5143524_SNP [dm6]	C	A	2.642e^-4	0.873	INTERGENIC	transposable element FlyBase
3L	5495624	3L_5495624_SNP [dm3] 3L_5502524_SNP [dm6]	A	G	2.645e^-4	0.873	INTERGENIC
2L	988963	2L_988963_SNP [dm3] 2L_988963_SNP [dm6]	G	T	2.651e^-4	0.873	EXON CR44801	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8891130	3L_8891130_SNP [dm3] 3L_8898030_SNP [dm6]	A	G	2.665e^-4	0.873	SPLICE_SITE_REGION TrpA1 INTRON TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26019640	3R_26019640_SNP [dm3] 3R_30193918_SNP [dm6]	C	T	2.668e^-4	0.873	DOWNSTREAM CG15531 INTERGENIC
X	20342578	X_20342578_SNP [dm3] X_20471551_SNP [dm6]	G	A	2.672e^-4	0.873	UTR_3_PRIME RhoGAP19D DOWNSTREAM RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3L	5021644	3L_5021644_SNP [dm3] 3L_5021644_SNP [dm6]	T	G	2.683e^-4	0.873	INTRON Con
2L	9918542	2L_9918542_SNP [dm3] 2L_9918542_SNP [dm6]	A	T	2.697e^-4	0.873	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16145147	3R_16145147_SNP [dm3] 3R_20319425_SNP [dm6]	G	A	2.698e^-4	0.873	INTRON CG42668
2L	10503730	2L_10503730_SNP [dm3] 2L_10503730_SNP [dm6]	A	G	2.699e^-4	0.873	INTRON Myo31DF
3R	16166886	3R_16166886_SNP [dm3] 3R_20341164_SNP [dm6]	G	A	2.704e^-4	0.873	INTRON Ir92a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21135340	X_21135340_SNP [dm3] X_21264313_SNP [dm6]	A	G	2.710e^-4	0.873	INTRON CG32521
3L	6182495	3L_6182495_SNP [dm3] 3L_6189395_SNP [dm6]	A	T	2.713e^-4	0.873	UPSTREAM CG7386 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2L	20288971	2L_20288971_SNP [dm3] 2L_20288971_SNP [dm6]	G	C	2.718e^-4	0.873	INTERGENIC
2L	10686263	2L_10686263_SNP [dm3] 2L_10686263_SNP [dm6]	C	T	2.722e^-4	0.873	UTR_3_PRIME CG7296 DOWNSTREAM CG7296	TF binding site mE1_TFBS_zfh1
2R	8446928	2R_8446928_SNP [dm3] 2R_12559423_SNP [dm6]	G	C	2.732e^-4	0.873	INTRON fra
2R	10247403	2R_10247403_SNP [dm3] 2R_14359898_SNP [dm6]	G	A	2.732e^-4	0.873	SYNONYMOUS_CODING Arc1 DOWNSTREAM CR10102	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10768190	3L_10768190_SNP [dm3] 3L_10775090_SNP [dm6]	G	A	2.742e^-4	0.873	INTERGENIC
3L	2159633	3L_2159633_SNP [dm3] 3L_2159633_SNP [dm6]	T	A	2.748e^-4	0.873	INTRON CG15822	TF binding site mE1_TFBS_inv
2R	9207075	2R_9207075_SNP [dm3] 2R_13319570_SNP [dm6]	A	T	2.753e^-4	0.873	INTERGENIC
2R	8453951	2R_8453951_SNP [dm3] 2R_12566446_SNP [dm6]	G	A	2.759e^-4	0.873	NON_SYNONYMOUS_CODING Cyp301a1	TF binding site mE1_TFBS_HSA
2L	9410107	2L_9410107_SNP [dm3] 2L_9410107_SNP [dm6]	G	A	2.764e^-4	0.873	INTRON Shawl
3L	4239857	3L_4239857_SNP [dm3] 3L_4239857_SNP [dm6]	G	C	2.764e^-4	0.873	UPSTREAM CG14997 DOWNSTREAM CR45738 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4240093	3L_4240093_SNP [dm3] 3L_4240093_SNP [dm6]	A	G	2.764e^-4	0.873	UPSTREAM CG14997 EXON CR45738	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	1015170	2R_1015170_DEL [dm3] 2R_5127665_DEL [dm6]	TA	T	2.764e^-4	0.873	UPSTREAM CR43256 INTRON gus & 1 other	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	17358580	3R_17358580_SNP [dm3] 3R_21532858_SNP [dm6]	T	C	2.768e^-4	0.873	INTRON CR43372
3L	16282377	3L_16282377_SNP [dm3] 3L_16289277_SNP [dm6]	T	A	2.771e^-4	0.873	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
3L	12239779	3L_12239779_SNP [dm3] 3L_12246679_SNP [dm6]	G	T	2.776e^-4	0.873	UPSTREAM CR43991 INTRON app
2L	13612901	2L_13612901_SNP [dm3] 2L_13612901_SNP [dm6]	A	T	2.781e^-4	0.873	INTRON kuz
2L	2623817	2L_2623817_SNP [dm3] 2L_2623817_SNP [dm6]	G	C	2.781e^-4	0.873	INTERGENIC
3R	21179838	3R_21179838_SNP [dm3] 3R_25354116_SNP [dm6]	T	C	2.786e^-4	0.873	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10137533	3L_10137533_SNP [dm3] 3L_10144433_SNP [dm6]	A	G	2.789e^-4	0.873	INTERGENIC
2L	3635621	2L_3635621_SNP [dm3] 2L_3635621_SNP [dm6]	A	T	2.790e^-4	0.873	INTRON for
2L	3635546	2L_3635546_SNP [dm3] 2L_3635546_SNP [dm6]	T	C	2.792e^-4	0.873	INTRON for
3L	1711294	3L_1711294_SNP [dm3] 3L_1711294_SNP [dm6]	A	G	2.804e^-4	0.873	INTRON CG7991
3L	19285729	3L_19285729_SNP [dm3] 3L_19292629_SNP [dm6]	G	A	2.813e^-4	0.873	UTR_5_PRIME Gbs-76A UPSTREAM Gbs-76A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	11302153	2L_11302153_SNP [dm3] 2L_11302153_SNP [dm6]	T	A	2.813e^-4	0.873	INTERGENIC
3L	6777253	3L_6777253_SNP [dm3] 3L_6784153_SNP [dm6]	T	C	2.814e^-4	0.873	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
X	16564738	X_16564738_SNP [dm3] X_16670705_SNP [dm6]	C	T	2.822e^-4	0.873	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7057687	3L_7057687_SNP [dm3] 3L_7064587_SNP [dm6]	C	T	2.822e^-4	0.873	INTRON CG8641
2L	9625420	2L_9625420_SNP [dm3] 2L_9625420_SNP [dm6]	A	G	2.826e^-4	0.873	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17150441	2R_17150441_SNP [dm3] 2R_21262936_SNP [dm6]	G	A	2.831e^-4	0.873	INTRON Rgk3
3L	8315381	3L_8315381_SNP [dm3] 3L_8322281_SNP [dm6]	A	T	2.832e^-4	0.873	DOWNSTREAM CG13670 INTERGENIC
2L	19088443	2L_19088443_SNP [dm3] 2L_19088443_SNP [dm6]	C	T	2.833e^-4	0.873	INTRON Lim3
X	8968020	X_8968020_SNP [dm3] X_9073987_SNP [dm6]	G	A	2.835e^-4	0.873	INTRON CG44325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	14962405	3L_14962405_INS [dm3] 3L_14969305_INS [dm6]	G	GCA	2.840e^-4	0.873	UPSTREAM Tom INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14618712	X_14618712_SNP [dm3] X_14724679_SNP [dm6]	G	T	2.856e^-4	0.873	INTRON NetB
X	6691938	X_6691938_SNP [dm3] X_6797905_SNP [dm6]	G	A	2.857e^-4	0.873	INTRON C3G
2R	10774811	2R_10774811_SNP [dm3] 2R_14887306_SNP [dm6]	G	T	2.859e^-4	0.873	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
2R	13223077	2R_13223077_SNP [dm3] 2R_17335572_SNP [dm6]	G	T	2.873e^-4	0.873	INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13527319	2R_13527319_SNP [dm3] 2R_17639814_SNP [dm6]	T	A	2.878e^-4	0.873	UPSTREAM CG10936 INTERGENIC
X	17276830	X_17276830_SNP [dm3] X_17382797_SNP [dm6]	G	C	2.886e^-4	0.873	INTERGENIC
3L	6681698	3L_6681698_INS [dm3] 3L_6688598_INS [dm6]	T	TT	2.888e^-4	0.873	DOWNSTREAM SP1173 INTERGENIC
3L	4603286	3L_4603286_SNP [dm3] 3L_4603286_SNP [dm6]	G	A	2.891e^-4	0.873	INTRON Src64B
X	11667804	X_11667804_SNP [dm3] X_11773771_SNP [dm6]	A	G	2.891e^-4	0.873	INTRON dy
2L	2694092	2L_2694092_SNP [dm3] 2L_2694092_SNP [dm6]	T	C	2.895e^-4	0.873	INTRON CG31690
3L	13819267	3L_13819267_SNP [dm3] 3L_13826167_SNP [dm6]	G	A	2.912e^-4	0.873	INTERGENIC
2R	12776055	2R_12776055_SNP [dm3] 2R_16888550_SNP [dm6]	A	G	2.912e^-4	0.873	INTRON CG8910
2R	16114687	2R_16114687_SNP [dm3] 2R_20227182_SNP [dm6]	A	G	2.915e^-4	0.873	INTERGENIC
X	11162203	X_11162203_SNP [dm3] X_11268170_SNP [dm6]	C	G	2.918e^-4	0.873	INTRON CG44422
3L	5234893	3L_5234893_SNP [dm3] 3L_5241793_SNP [dm6]	A	T	2.924e^-4	0.873	INTRON shep
2R	4788161	2R_4788161_SNP [dm3] 2R_8900656_SNP [dm6]	G	T	2.933e^-4	0.873	SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13497183	2R_13497183_SNP [dm3] 2R_17609678_SNP [dm6]	G	A	2.948e^-4	0.873	INTRON CG10936
X	12906563	X_12906563_SNP [dm3] X_13012530_SNP [dm6]	A	G	2.956e^-4	0.873	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4648562	2L_4648562_SNP [dm3] 2L_4648562_SNP [dm6]	A	G	2.968e^-4	0.873	DOWNSTREAM CG43798 INTERGENIC
2R	17646341	2R_17646341_SNP [dm3] 2R_21758836_SNP [dm6]	C	T	2.971e^-4	0.873	DOWNSTREAM Grx-1 INTERGENIC
3R	25475648	3R_25475648_SNP [dm3] 3R_29649926_SNP [dm6]	C	T	2.974e^-4	0.873	INTRON Dop1R2
2R	5939978	2R_5939978_SNP [dm3] 2R_10052473_SNP [dm6]	A	C	2.984e^-4	0.873	UPSTREAM magu & 1 other DOWNSTREAM CR44297 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	19864245	X_19864245_SNP [dm3] X_19970212_SNP [dm6]	A	C	2.989e^-4	0.873	DOWNSTREAM Nep3 INTERGENIC
2L	14410632	2L_14410632_INS [dm3] 2L_14410632_INS [dm6]	A	AGACACAA	2.990e^-4	0.873	DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	15208628	X_15208628_SNP [dm3] X_15314595_SNP [dm6]	A	T	2.992e^-4	0.873	DOWNSTREAM CR44961 INTRON gce
3L	18115607	3L_18115607_SNP [dm3] 3L_18122507_SNP [dm6]	A	T	3.002e^-4	0.873	UPSTREAM CG42853 INTERGENIC
2L	8059128	2L_8059128_SNP [dm3] 2L_8059128_SNP [dm6]	C	T	3.013e^-4	0.873	SYNONYMOUS_CODING poe
X	15293650	X_15293650_DEL [dm3] X_15399617_DEL [dm6]	TC	T	3.016e^-4	0.873	INTRON Cngl
X	10988542	X_10988542_SNP [dm3] X_11094509_SNP [dm6]	C	T	3.019e^-4	0.873	UTR_3_PRIME CG2061 EXON CR45604
3L	5021426	3L_5021426_SNP [dm3] 3L_5021426_SNP [dm6]	T	C	3.022e^-4	0.873	INTRON Con
2R	18747725	2R_18747725_SNP [dm3] 2R_22860202_SNP [dm6]	T	C	3.030e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17616960	2R_17616960_SNP [dm3] 2R_21729455_SNP [dm6]	C	T	3.037e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16793098	2R_16793098_SNP [dm3] 2R_20905593_SNP [dm6]	G	A	3.039e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20959777	2L_20959777_SNP [dm3] 2L_20959777_SNP [dm6]	G	T	3.041e^-4	0.873	INTERGENIC
2R	10323801	2R_10323801_SNP [dm3] 2R_14436296_SNP [dm6]	C	G	3.043e^-4	0.873	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	3.054e^-4	0.873	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	6180653	2R_6180653_SNP [dm3] 2R_10293148_SNP [dm6]	G	A	3.057e^-4	0.873	INTRON CAP
2L	901470	2L_901470_SNP [dm3] 2L_901470_SNP [dm6]	T	A	3.058e^-4	0.873	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10337707	2L_10337707_SNP [dm3] 2L_10337707_SNP [dm6]	C	T	3.060e^-4	0.873	INTRON GATAd
2R	16114580	2R_16114580_SNP [dm3] 2R_20227075_SNP [dm6]	A	T	3.069e^-4	0.873	INTERGENIC
2L	9926696	2L_9926696_SNP [dm3] 2L_9926696_SNP [dm6]	G	A	3.070e^-4	0.873	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
3R	24418025	3R_24418025_SNP [dm3] 3R_28592303_SNP [dm6]	G	A	3.072e^-4	0.873	DOWNSTREAM MRE23 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
3R	25474824	3R_25474824_DEL [dm3] 3R_29649102_DEL [dm6]	TAA	T	3.073e^-4	0.873	INTRON Dop1R2
2R	19506180	2R_19506180_SNP [dm3] 2R_23618657_SNP [dm6]	C	T	3.079e^-4	0.873	INTERGENIC
3L	13385647	3L_13385647_SNP [dm3] 3L_13392547_SNP [dm6]	T	A	3.083e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	5900794	2L_5900794_SNP [dm3] 2L_5900794_SNP [dm6]	G	A	3.086e^-4	0.873	UPSTREAM CR44579 INTERGENIC
2L	20959852	2L_20959852_SNP [dm3] 2L_20959852_SNP [dm6]	T	G	3.088e^-4	0.873	INTERGENIC
2L	20374085	2L_20374085_SNP [dm3] 2L_20374085_SNP [dm6]	C	T	3.094e^-4	0.873	UPSTREAM Ugt37a1 INTERGENIC
3L	14795228	3L_14795228_SNP [dm3] 3L_14802128_SNP [dm6]	G	C	3.116e^-4	0.873	UTR_5_PRIME NHP2 DOWNSTREAM gnu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA
2L	13764578	2L_13764578_SNP [dm3] 2L_13764578_SNP [dm6]	C	T	3.118e^-4	0.873	INTRON TM9SF4
2L	8972625	2L_8972625_SNP [dm3] 2L_8972625_SNP [dm6]	G	A	3.127e^-4	0.873	INTRON CG9541
3R	15749990	3R_15749990_SNP [dm3] 3R_19924268_SNP [dm6]	C	T	3.140e^-4	0.873	INTRON CG4462
2L	3346723	2L_3346723_SNP [dm3] 2L_3346723_SNP [dm6]	G	A	3.141e^-4	0.873	INTRON E23
2L	12725183	2L_12725183_SNP [dm3] 2L_12725183_SNP [dm6]	A	T	3.141e^-4	0.873	INTRON MRP
2L	7088882	2L_7088882_SNP [dm3] 2L_7088882_SNP [dm6]	C	A	3.143e^-4	0.873	INTERGENIC
2L	12725164	2L_12725164_SNP [dm3] 2L_12725164_SNP [dm6]	T	A	3.163e^-4	0.873	INTRON MRP
2L	12725341	2L_12725341_SNP [dm3] 2L_12725341_SNP [dm6]	T	C	3.163e^-4	0.873	INTRON MRP
2L	12726295	2L_12726295_SNP [dm3] 2L_12726295_SNP [dm6]	G	C	3.163e^-4	0.873	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5876151	2L_5876151_SNP [dm3] 2L_5876151_SNP [dm6]	T	A	3.172e^-4	0.873	INTRON rau
2L	2623839	2L_2623839_SNP [dm3] 2L_2623839_SNP [dm6]	A	G	3.196e^-4	0.873	INTERGENIC
3L	19563618	3L_19563618_SNP [dm3] 3L_19570518_SNP [dm6]	A	T	3.202e^-4	0.873	INTRON Shal	TF binding site mE1_TFBS_cad
3R	26024786	3R_26024786_SNP [dm3] 3R_30199064_SNP [dm6]	A	T	3.202e^-4	0.873	INTRON CG9743	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4557151	2L_4557151_SNP [dm3] 2L_4557151_SNP [dm6]	T	C	3.205e^-4	0.873	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16898671	2R_16898671_SNP [dm3] 2R_21011166_SNP [dm6]	T	C	3.206e^-4	0.873	SYNONYMOUS_CODING grau UPSTREAM CG9346	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17351007	2R_17351007_SNP [dm3] 2R_21463502_SNP [dm6]	A	G	3.216e^-4	0.873	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16772221	X_16772221_SNP [dm3] X_16878188_SNP [dm6]	T	A	3.218e^-4	0.873	INTERGENIC
X	7883744	X_7883744_SNP [dm3] X_7989711_SNP [dm6]	A	G	3.221e^-4	0.873	INTERGENIC
X	3253267	X_3253267_MNP [dm3] X_3359234_MNP [dm6]	GTC	AAT	3.222e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14300591	2L_14300591_SNP [dm3] 2L_14300591_SNP [dm6]	T	C	3.225e^-4	0.873	UPSTREAM wb INTRON wb	TF binding site mE1_TFBS_Trl
3L	1363862	3L_1363862_SNP [dm3] 3L_1363862_SNP [dm6]	G	C	3.228e^-4	0.873	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
2R	11495081	2R_11495081_SNP [dm3] 2R_15607576_SNP [dm6]	G	A	3.231e^-4	0.873	INTERGENIC
X	16377515	X_16377515_SNP [dm3] X_16483482_SNP [dm6]	G	A	3.231e^-4	0.873	INTRON para
2R	14270156	2R_14270156_SNP [dm3] 2R_18382651_SNP [dm6]	C	G	3.232e^-4	0.873	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2L	12148481	2L_12148481_SNP [dm3] 2L_12148481_SNP [dm6]	T	A	3.232e^-4	0.873	INTRON CG31760
X	6283846	X_6283846_INS [dm3] X_6389813_INS [dm6]	G	GAG	3.235e^-4	0.873	INTERGENIC
2R	16750644	2R_16750644_SNP [dm3] 2R_20863139_SNP [dm6]	C	A	3.235e^-4	0.873	UPSTREAM CG15227 INTERGENIC
3L	9250967	3L_9250967_SNP [dm3] 3L_9257867_SNP [dm6]	G	A	3.237e^-4	0.873	INTRON GluRIB
X	15421311	X_15421311_SNP [dm3] X_15527278_SNP [dm6]	C	T	3.237e^-4	0.873	INTRON Ac13E
2R	13058167	2R_13058167_SNP [dm3] 2R_17170662_SNP [dm6]	G	A	3.242e^-4	0.873	INTERGENIC
2L	13797894	2L_13797894_SNP [dm3] 2L_13797894_SNP [dm6]	T	C	3.242e^-4	0.873	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1219298	2R_1219298_SNP [dm3] 2R_5331793_SNP [dm6]	A	T	3.243e^-4	0.873	INTERGENIC	transposable element FlyBase
3L	9919556	3L_9919556_SNP [dm3] 3L_9926456_SNP [dm6]	T	C	3.246e^-4	0.873	INTRON CG34356
2L	12535069	2L_12535069_SNP [dm3] 2L_12535069_SNP [dm6]	G	T	3.249e^-4	0.873	INTRON bun
3R	25474893	3R_25474893_SNP [dm3] 3R_29649171_SNP [dm6]	T	C	3.252e^-4	0.873	INTRON Dop1R2
2L	12148508	2L_12148508_SNP [dm3] 2L_12148508_SNP [dm6]	C	A	3.259e^-4	0.873	INTRON CG31760
2L	19214969	2L_19214969_SNP [dm3] 2L_19214969_SNP [dm6]	T	A	3.261e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15996156	X_15996156_SNP [dm3] X_16102123_SNP [dm6]	T	G	3.274e^-4	0.873	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10751318	3L_10751318_SNP [dm3] 3L_10758218_SNP [dm6]	C	A	3.275e^-4	0.873	INTERGENIC
X	7888874	X_7888874_SNP [dm3] X_7994841_SNP [dm6]	A	C	3.276e^-4	0.873	UPSTREAM Tbh INTERGENIC
2L	20944370	2L_20944370_SNP [dm3] 2L_20944370_SNP [dm6]	C	G	3.279e^-4	0.873	INTERGENIC
2R	14509614	2R_14509614_SNP [dm3] 2R_18622109_SNP [dm6]	G	T	3.298e^-4	0.873	SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6085162	X_6085162_SNP [dm3] X_6191129_SNP [dm6]	G	A	3.316e^-4	0.873	INTRON Ca-alpha1T
3R	14289037	3R_14289037_SNP [dm3] 3R_18463315_SNP [dm6]	A	T	3.323e^-4	0.873	INTRON fru
3R	17358555	3R_17358555_DEL [dm3] 3R_21532833_DEL [dm6]	TA	G	3.324e^-4	0.873	INTRON CR43372
2L	7591366	2L_7591366_SNP [dm3] 2L_7591366_SNP [dm6]	G	A	3.325e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7591383	2L_7591383_SNP [dm3] 2L_7591383_SNP [dm6]	A	C	3.325e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9619002	2L_9619002_SNP [dm3] 2L_9619002_SNP [dm6]	T	G	3.332e^-4	0.873	INTRON GlcAT-S
2L	9619005	2L_9619005_DEL [dm3] 2L_9619005_DEL [dm6]	GT	A	3.332e^-4	0.873	INTRON GlcAT-S
2L	8808572	2L_8808572_SNP [dm3] 2L_8808572_SNP [dm6]	A	G	3.336e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	9228688	X_9228688_SNP [dm3] X_9334655_SNP [dm6]	G	A	3.341e^-4	0.873	INTRON CG34449	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1362173	2L_1362173_SNP [dm3] 2L_1362173_SNP [dm6]	A	T	3.345e^-4	0.873	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad
2L	9918583	2L_9918583_SNP [dm3] 2L_9918583_SNP [dm6]	T	A	3.345e^-4	0.873	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16114576	2R_16114576_SNP [dm3] 2R_20227071_SNP [dm6]	C	T	3.355e^-4	0.873	INTERGENIC
X	14332856	X_14332856_SNP [dm3] X_14438823_SNP [dm6]	G	A	3.366e^-4	0.873	INTRON dpr8
3R	7125049	3R_7125049_SNP [dm3] 3R_11299327_SNP [dm6]	A	T	3.373e^-4	0.873	INTRON CR31386
2L	13759585	2L_13759585_SNP [dm3] 2L_13759585_SNP [dm6]	A	G	3.374e^-4	0.873	INTRON TM9SF4
3L	16282417	3L_16282417_SNP [dm3] 3L_16289317_SNP [dm6]	T	C	3.378e^-4	0.873	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
3L	14850865	3L_14850865_SNP [dm3] 3L_14857765_SNP [dm6]	C	A	3.386e^-4	0.873	INTRON CG17839
X	19887668	X_19887668_SNP [dm3] X_19993635_SNP [dm6]	T	A	3.392e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5494994	3L_5494994_SNP [dm3] 3L_5501894_SNP [dm6]	A	T	3.393e^-4	0.873	UPSTREAM CR44519 INTERGENIC
2L	18513364	2L_18513364_SNP [dm3] 2L_18513364_SNP [dm6]	C	A	3.397e^-4	0.873	UTR_3_PRIME CG10178
3R	13984752	3R_13984752_SNP [dm3] 3R_18159030_SNP [dm6]	G	T	3.406e^-4	0.873	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3R	25474587	3R_25474587_INS [dm3] 3R_29648865_INS [dm6]	A	AA	3.410e^-4	0.873	INTRON Dop1R2
2L	8495168	2L_8495168_SNP [dm3] 2L_8495168_SNP [dm6]	G	A	3.410e^-4	0.873	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	781888	2R_781888_SNP [dm3] 2R_4894383_SNP [dm6]	T	G	3.413e^-4	0.873	INTERGENIC	transposable element FlyBase
2R	17683859	2R_17683859_SNP [dm3] 2R_21796354_SNP [dm6]	T	A	3.418e^-4	0.873	UPSTREAM CG34204 INTERGENIC
3L	4241831	3L_4241831_INS [dm3] 3L_4241831_INS [dm6]	C	CTAAAGAATACTTTTAACTT...	3.425e^-4	0.873	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2341419	3L_2341419_SNP [dm3] 3L_2341419_SNP [dm6]	T	C	3.428e^-4	0.873	INTRON MsR1	TF binding site mE1_TFBS_inv
3L	8315375	3L_8315375_SNP [dm3] 3L_8322275_SNP [dm6]	C	T	3.430e^-4	0.873	UTR_3_PRIME CG13670
X	3868382	X_3868382_SNP [dm3] X_3974349_SNP [dm6]	C	G	3.440e^-4	0.873	INTERGENIC
X	13964373	X_13964373_SNP [dm3] X_14070340_SNP [dm6]	T	G	3.440e^-4	0.873	UPSTREAM tRNA:S474:12Eh INTERGENIC
3L	3785928	3L_3785928_SNP [dm3] 3L_3785928_SNP [dm6]	C	T	3.444e^-4	0.873	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	17865612	2R_17865612_SNP [dm3] 2R_21978107_SNP [dm6]	G	A	3.450e^-4	0.873	DOWNSTREAM Gr58b & 1 other INTERGENIC
2R	5334964	2R_5334964_SNP [dm3] 2R_9447459_SNP [dm6]	A	G	3.450e^-4	0.873	INTRON Camta	TF binding site mE1_TFBS_HSA
3R	9762716	3R_9762716_SNP [dm3] 3R_13936994_SNP [dm6]	T	A	3.456e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5801836	X_5801836_SNP [dm3] X_5907803_SNP [dm6]	T	C	3.457e^-4	0.873	SYNONYMOUS_CODING CG4020 UPSTREAM CG12236	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15208616	X_15208616_DEL [dm3] X_15314583_DEL [dm6]	ACTGTTATGCA...	A	3.458e^-4	0.873	DOWNSTREAM CR44961 INTRON gce
2L	6070867	2L_6070867_INS [dm3] 2L_6070867_INS [dm6]	A	AA	3.459e^-4	0.873	UPSTREAM Kr-h2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	15916105	2R_15916105_SNP [dm3] 2R_20028600_SNP [dm6]	A	C	3.466e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	955235	2R_955235_SNP [dm3] 2R_5067730_SNP [dm6]	G	T	3.473e^-4	0.873	INTRON TpnC41C
2R	17607659	2R_17607659_SNP [dm3] 2R_21720154_SNP [dm6]	A	G	3.480e^-4	0.873	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	16258164	X_16258164_SNP [dm3] X_16364131_SNP [dm6]	T	A	3.487e^-4	0.873	SYNONYMOUS_CODING nonA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17358585	3R_17358585_DEL [dm3] 3R_21532863_DEL [dm6]	TT	T	3.494e^-4	0.873	INTRON CR43372
3L	16282795	3L_16282795_SNP [dm3] 3L_16289695_SNP [dm6]	C	A	3.496e^-4	0.873	DOWNSTREAM CG13045 INTERGENIC
2R	15248163	2R_15248163_SNP [dm3] 2R_19360658_SNP [dm6]	T	A	3.521e^-4	0.873	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11339732	X_11339732_SNP [dm3] X_11445699_SNP [dm6]	A	G	3.526e^-4	0.873	UTR_3_PRIME Sk1 INTRON Evi5	TF binding site mE1_TFBS_inv
3R	22306993	3R_22306993_SNP [dm3] 3R_26481271_SNP [dm6]	C	T	3.528e^-4	0.873	INTRON plum
X	10049666	X_10049666_SNP [dm3] X_10155633_SNP [dm6]	T	A	3.529e^-4	0.873	DOWNSTREAM CG12645 INTRON CR44894
2R	16978030	2R_16978030_SNP [dm3] 2R_21090525_SNP [dm6]	A	G	3.536e^-4	0.873	SYNONYMOUS_CODING Rbpn-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9962661	X_9962661_SNP [dm3] X_10068628_SNP [dm6]	A	G	3.546e^-4	0.873	INTRON CG15312	TF binding site mE1_TFBS_inv
3R	8701543	3R_8701543_SNP [dm3] 3R_12875821_SNP [dm6]	T	G	3.546e^-4	0.873	INTERGENIC
2L	12148416	2L_12148416_SNP [dm3] 2L_12148416_SNP [dm6]	G	A	3.550e^-4	0.873	INTRON CG31760
2R	19706310	2R_19706310_SNP [dm3] 2R_23818787_SNP [dm6]	T	C	3.550e^-4	0.873	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	10342435	3L_10342435_MNP [dm3] 3L_10349335_MNP [dm6]	TCTG	CTGC	3.559e^-4	0.873	INTRON CR44327
3R	18590007	3R_18590007_SNP [dm3] 3R_22764285_SNP [dm6]	T	C	3.568e^-4	0.873	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11339770	X_11339770_SNP [dm3] X_11445737_SNP [dm6]	T	G	3.570e^-4	0.873	UTR_3_PRIME Sk1 INTRON Evi5	TF binding site mE1_TFBS_inv
2R	16114685	2R_16114685_SNP [dm3] 2R_20227180_SNP [dm6]	T	C	3.574e^-4	0.873	INTERGENIC
2R	9124156	2R_9124156_SNP [dm3] 2R_13236651_SNP [dm6]	G	C	3.588e^-4	0.873	NON_SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_sens
3R	17358510	3R_17358510_INS [dm3] 3R_21532788_INS [dm6]	T	GG	3.589e^-4	0.873	INTRON CR43372
3L	18147161	3L_18147161_SNP [dm3] 3L_18154061_SNP [dm6]	A	G	3.590e^-4	0.873	DOWNSTREAM CG7330 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3146395	3L_3146395_SNP [dm3] 3L_3146395_SNP [dm6]	A	C	3.592e^-4	0.873	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo
X	2690853	X_2690853_SNP [dm3] X_2796820_SNP [dm6]	C	T	3.599e^-4	0.873	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	14182115	3R_14182115_SNP [dm3] 3R_18356393_SNP [dm6]	A	T	3.603e^-4	0.873	INTRON CG15803	TF binding site mE1_TFBS_chinmo
X	11339585	X_11339585_SNP [dm3] X_11445552_SNP [dm6]	G	T	3.605e^-4	0.873	SYNONYMOUS_CODING Sk1 INTRON Evi5	TF binding site mE1_TFBS_inv
3L	11206628	3L_11206628_SNP [dm3] 3L_11213528_SNP [dm6]	A	C	3.608e^-4	0.873	SYNONYMOUS_CODING CG7600 UPSTREAM CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19521244	2R_19521244_SNP [dm3] 2R_23633721_SNP [dm6]	T	G	3.608e^-4	0.873	INTRON retn
3R	10826984	3R_10826984_SNP [dm3] 3R_15001262_SNP [dm6]	T	A	3.609e^-4	0.873	INTERGENIC
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	3.616e^-4	0.873	INTRON CG15365
2R	17397117	2R_17397117_SNP [dm3] 2R_21509612_SNP [dm6]	A	G	3.624e^-4	0.873	INTRON MESK2
3L	18605760	3L_18605760_SNP [dm3] 3L_18612660_SNP [dm6]	C	A	3.624e^-4	0.873	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3R	26034888	3R_26034888_SNP [dm3] 3R_30209166_SNP [dm6]	A	C	3.625e^-4	0.873	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10686357	2L_10686357_SNP [dm3] 2L_10686357_SNP [dm6]	A	G	3.633e^-4	0.873	UTR_3_PRIME CG7296 DOWNSTREAM CG7296
3L	10220365	3L_10220365_SNP [dm3] 3L_10227265_SNP [dm6]	A	G	3.636e^-4	0.873	INTERGENIC
2L	8132321	2L_8132321_SNP [dm3] 2L_8132321_SNP [dm6]	T	A	3.637e^-4	0.873	INTRON CG8668
3R	14012511	3R_14012511_SNP [dm3] 3R_18186789_SNP [dm6]	G	C	3.640e^-4	0.873	SYNONYMOUS_CODING Arp5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12242473	2R_12242473_SNP [dm3] 2R_16354968_SNP [dm6]	C	A	3.641e^-4	0.873	INTRON CG30098
3R	13984641	3R_13984641_SNP [dm3] 3R_18158919_SNP [dm6]	A	G	3.645e^-4	0.873	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
2L	4825199	2L_4825199_SNP [dm3] 2L_4825199_SNP [dm6]	C	G	3.650e^-4	0.873	INTRON CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14926045	3L_14926045_SNP [dm3] 3L_14932945_SNP [dm6]	G	C	3.651e^-4	0.873	INTRON DCX-EMAP
2R	14270070	2R_14270070_SNP [dm3] 2R_18382565_SNP [dm6]	T	G	3.653e^-4	0.873	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	1350300	3L_1350300_SNP [dm3] 3L_1350300_SNP [dm6]	G	A	3.654e^-4	0.873	UPSTREAM Ptp61F & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9827806	3L_9827806_SNP [dm3] 3L_9834706_SNP [dm6]	T	A	3.656e^-4	0.873	UTR_3_PRIME I-2 DOWNSTREAM CG43897
2R	12320721	2R_12320721_SNP [dm3] 2R_16433216_SNP [dm6]	A	C	3.670e^-4	0.873	DOWNSTREAM CG7848 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4838825	3L_4838825_SNP [dm3] 3L_4838825_SNP [dm6]	A	G	3.676e^-4	0.873	UTR_5_PRIME CG13707 INTRON CG13707
3L	4838899	3L_4838899_SNP [dm3] 3L_4838899_SNP [dm6]	G	A	3.676e^-4	0.873	INTRON CG13707
2L	15045678	2L_15045678_SNP [dm3] 2L_15045678_SNP [dm6]	T	A	3.677e^-4	0.873	INTRON ck
3L	7688821	3L_7688821_SNP [dm3] 3L_7695721_SNP [dm6]	T	C	3.685e^-4	0.873	UPSTREAM CG44195 DOWNSTREAM Ank2 INTRON CG32373 & 1 other
2R	14270090	2R_14270090_SNP [dm3] 2R_18382585_SNP [dm6]	T	C	3.689e^-4	0.873	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	18821372	2R_18821372_SNP [dm3] 2R_22933849_SNP [dm6]	C	T	3.693e^-4	0.873	UTR_5_PRIME CG3788 UPSTREAM CG3788 DOWNSTREAM CG3800	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15688430	2R_15688430_SNP [dm3] 2R_19800925_SNP [dm6]	G	A	3.696e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13965681	2L_13965681_SNP [dm3] 2L_13965681_SNP [dm6]	C	T	3.698e^-4	0.873	SYNONYMOUS_CODING NimB2 DOWNSTREAM NimB1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4296979	2L_4296979_SNP [dm3] 2L_4296979_SNP [dm6]	C	T	3.699e^-4	0.873	INTRON tutl
2R	11503427	2R_11503427_SNP [dm3] 2R_15615922_SNP [dm6]	C	T	3.701e^-4	0.873	INTRON CG42524
X	11658949	X_11658949_SNP [dm3] X_11764916_SNP [dm6]	C	G	3.706e^-4	0.873	UPSTREAM CG9360 INTRON m	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	5516599	X_5516599_SNP [dm3] X_5622566_SNP [dm6]	C	T	3.723e^-4	0.873	UPSTREAM l_1_G0045 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	6389613	2L_6389613_SNP [dm3] 2L_6389613_SNP [dm6]	G	T	3.724e^-4	0.873	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15208629	X_15208629_INS [dm3] X_15314596_INS [dm6]	C	CCCATAA	3.727e^-4	0.873	DOWNSTREAM CR44961 INTRON gce
2L	8808561	2L_8808561_DEL [dm3] 2L_8808561_DEL [dm6]	TGCAGG	T	3.731e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	1114905	3L_1114905_SNP [dm3] 3L_1114905_SNP [dm6]	T	C	3.748e^-4	0.873	INTERGENIC
2L	7332926	2L_7332926_SNP [dm3] 2L_7332926_SNP [dm6]	A	T	3.752e^-4	0.873	UPSTREAM Wnt6 INTERGENIC
2R	16049393	2R_16049393_SNP [dm3] 2R_20161888_SNP [dm6]	G	A	3.763e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4241834	3L_4241834_INS [dm3] 3L_4241834_INS [dm6]	A	AAGGGCAATTGAGATAAATT...	3.781e^-4	0.873	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7451848	2R_7451848_SNP [dm3] 2R_11564343_SNP [dm6]	C	G	3.782e^-4	0.873	INTERGENIC
3L	7240729	3L_7240729_SNP [dm3] 3L_7247629_SNP [dm6]	A	G	3.784e^-4	0.873	SYNONYMOUS_CODING Cdc27	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13703403	X_13703403_SNP [dm3] X_13809370_SNP [dm6]	C	T	3.789e^-4	0.873	SYNONYMOUS_CODING inaE UTR_3_PRIME inaE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26022494	3R_26022494_SNP [dm3] 3R_30196772_SNP [dm6]	C	T	3.795e^-4	0.873	SYNONYMOUS_CODING CG9743 UPSTREAM CG15531	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6114523	3L_6114523_DEL [dm3] 3L_6121423_DEL [dm6]	AA	T	3.798e^-4	0.873	INTRON Ets65A
3L	3927386	3L_3927386_SNP [dm3] 3L_3927386_SNP [dm6]	C	G	3.801e^-4	0.873	INTRON Eip63F-1
2R	17929924	2R_17929924_SNP [dm3] 2R_22042419_SNP [dm6]	C	T	3.806e^-4	0.873	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
2L	8132290	2L_8132290_SNP [dm3] 2L_8132290_SNP [dm6]	G	T	3.819e^-4	0.873	INTRON CG8668
2L	3085527	2L_3085527_SNP [dm3] 2L_3085527_SNP [dm6]	G	T	3.821e^-4	0.873	INTRON toc
2R	16793031	2R_16793031_SNP [dm3] 2R_20905526_SNP [dm6]	C	T	3.833e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18182166	2R_18182166_SNP [dm3] 2R_22294661_SNP [dm6]	A	T	3.836e^-4	0.873	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3635465	2L_3635465_SNP [dm3] 2L_3635465_SNP [dm6]	A	G	3.839e^-4	0.873	INTRON for
3L	12859930	3L_12859930_INS [dm3] 3L_12866830_INS [dm6]	T	CA	3.849e^-4	0.873	INTERGENIC
2R	16542587	2R_16542587_SNP [dm3] 2R_20655082_SNP [dm6]	G	C	3.852e^-4	0.873	START_GAINED CG16799 UTR_5_PRIME CG16799 DOWNSTREAM CG11159 INTRON Lrt
2R	17646347	2R_17646347_SNP [dm3] 2R_21758842_SNP [dm6]	A	G	3.872e^-4	0.873	DOWNSTREAM Grx-1 INTERGENIC
3L	3006724	3L_3006724_SNP [dm3] 3L_3006724_SNP [dm6]	T	C	3.872e^-4	0.873	INTRON FMRFaR
3L	15935943	3L_15935943_SNP [dm3] 3L_15942843_SNP [dm6]	G	A	3.882e^-4	0.873	INTRON Pka-C3
3L	12886294	3L_12886294_SNP [dm3] 3L_12893194_SNP [dm6]	G	T	3.884e^-4	0.873	INTRON CG14118
2R	17278193	2R_17278193_SNP [dm3] 2R_21390688_SNP [dm6]	G	A	3.894e^-4	0.873	NON_SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
3L	3146356	3L_3146356_SNP [dm3] 3L_3146356_SNP [dm6]	C	T	3.898e^-4	0.873	SYNONYMOUS_CODING CG12082	TF binding site mE1_TFBS_chinmo
2R	3529346	2R_3529346_SNP [dm3] 2R_7641841_SNP [dm6]	A	C	3.902e^-4	0.873	SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
2R	13495795	2R_13495795_SNP [dm3] 2R_17608290_SNP [dm6]	G	C	3.905e^-4	0.873	NON_SYNONYMOUS_CODING CG10936
3R	22375158	3R_22375158_SNP [dm3] 3R_26549436_SNP [dm6]	G	A	3.909e^-4	0.873	INTRON scrib
2L	4951564	2L_4951564_SNP [dm3] 2L_4951564_SNP [dm6]	A	C	3.910e^-4	0.873	UPSTREAM Jon25Biii DOWNSTREAM Jon25Bii INTERGENIC
3R	26023961	3R_26023961_SNP [dm3] 3R_30198239_SNP [dm6]	C	T	3.918e^-4	0.873	INTRON CG9743
2L	11301493	2L_11301493_SNP [dm3] 2L_11301493_SNP [dm6]	T	A	3.919e^-4	0.873	INTERGENIC
3R	13984674	3R_13984674_SNP [dm3] 3R_18158952_SNP [dm6]	A	G	3.926e^-4	0.873	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
X	12400477	X_12400477_DEL [dm3] X_12506444_DEL [dm6]	AA	A	3.929e^-4	0.873	INTRON CG2556
3R	22813578	3R_22813578_SNP [dm3] 3R_26987856_SNP [dm6]	A	C	3.950e^-4	0.873	UPSTREAM CG31075 INTRON CG31075
3R	21159970	3R_21159970_SNP [dm3] 3R_25334248_SNP [dm6]	T	C	3.952e^-4	0.873	SYNONYMOUS_CODING CG10669	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8298600	2R_8298600_DEL [dm3] 2R_12411095_DEL [dm6]	ATT	A	3.954e^-4	0.873	DOWNSTREAM CG33626 INTRON CG33627
3R	22278852	3R_22278852_SNP [dm3] 3R_26453130_SNP [dm6]	C	T	3.955e^-4	0.873	SYNONYMOUS_CODING CG5447 DOWNSTREAM Hex-t2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17669278	2R_17669278_SNP [dm3] 2R_21781773_SNP [dm6]	T	C	3.964e^-4	0.873	INTERGENIC
3R	16512165	3R_16512165_SNP [dm3] 3R_20686443_SNP [dm6]	G	T	3.966e^-4	0.873	INTERGENIC
2L	2624252	2L_2624252_SNP [dm3] 2L_2624252_SNP [dm6]	G	T	3.971e^-4	0.873	INTERGENIC
3L	14928945	3L_14928945_SNP [dm3] 3L_14935845_SNP [dm6]	C	T	3.972e^-4	0.873	INTRON DCX-EMAP
2L	4953034	2L_4953034_SNP [dm3] 2L_4953034_SNP [dm6]	T	C	3.975e^-4	0.873	SYNONYMOUS_CODING Jon25Bii	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10829915	2L_10829915_SNP [dm3] 2L_10829915_SNP [dm6]	A	G	3.976e^-4	0.873	INTRON Nos
2L	6742953	2L_6742953_SNP [dm3] 2L_6742953_SNP [dm6]	C	T	3.977e^-4	0.873	UTR_5_PRIME CG11221
3R	25809856	3R_25809856_SNP [dm3] 3R_29984134_SNP [dm6]	A	G	4.000e^-4	0.873	INTRON CG7896
3R	9710682	3R_9710682_SNP [dm3] 3R_13884960_SNP [dm6]	T	C	4.000e^-4	0.873	INTERGENIC
2L	13966321	2L_13966321_SNP [dm3] 2L_13966321_SNP [dm6]	G	A	4.000e^-4	0.873	INTRON NimB2
2R	11603522	2R_11603522_SNP [dm3] 2R_15716017_SNP [dm6]	A	T	4.020e^-4	0.873	INTERGENIC
X	4292249	X_4292249_SNP [dm3] X_4398216_SNP [dm6]	C	T	4.022e^-4	0.873	INTRON CR32773
X	16700327	X_16700327_SNP [dm3] X_16806294_SNP [dm6]	G	A	4.023e^-4	0.873	UTR_5_PRIME ppk28 DOWNSTREAM CG13005 EXON CR44053
2R	3932027	2R_3932027_SNP [dm3] 2R_8044522_SNP [dm6]	T	G	4.033e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1305051	2L_1305051_SNP [dm3] 2L_1305051_SNP [dm6]	T	C	4.043e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13917665	3R_13917665_SNP [dm3] 3R_18091943_SNP [dm6]	G	A	4.044e^-4	0.873	INTRON sr
2L	13764599	2L_13764599_SNP [dm3] 2L_13764599_SNP [dm6]	T	G	4.046e^-4	0.873	INTRON TM9SF4
2R	13271621	2R_13271621_SNP [dm3] 2R_17384116_SNP [dm6]	T	C	4.048e^-4	0.873	INTERGENIC
3L	3842782	3L_3842782_SNP [dm3] 3L_3842782_SNP [dm6]	T	C	4.049e^-4	0.873	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	10592170	2R_10592170_SNP [dm3] 2R_14704665_SNP [dm6]	T	G	4.053e^-4	0.873	INTRON mspo
3L	9962578	3L_9962578_SNP [dm3] 3L_9969478_SNP [dm6]	G	A	4.054e^-4	0.873	INTRON Nc	TF binding site mE1_TFBS_cad
2R	9636345	2R_9636345_SNP [dm3] 2R_13748840_SNP [dm6]	A	C	4.055e^-4	0.873	UTR_3_PRIME fas
3L	11431492	3L_11431492_SNP [dm3] 3L_11438392_SNP [dm6]	A	G	4.057e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17476839	2R_17476839_SNP [dm3] 2R_21589334_SNP [dm6]	G	A	4.058e^-4	0.873	UPSTREAM CG33225 INTERGENIC
2L	18513656	2L_18513656_SNP [dm3] 2L_18513656_SNP [dm6]	C	T	4.063e^-4	0.873	DOWNSTREAM CG10178 INTERGENIC
3R	16708521	3R_16708521_SNP [dm3] 3R_20882799_SNP [dm6]	G	A	4.065e^-4	0.873	INTERGENIC
3R	26022767	3R_26022767_SNP [dm3] 3R_30197045_SNP [dm6]	G	A	4.068e^-4	0.873	SPLICE_SITE_REGION CG9743 UPSTREAM CG15531 INTRON CG9743	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13747447	2R_13747447_SNP [dm3] 2R_17859942_SNP [dm6]	A	G	4.071e^-4	0.873	UTR_3_PRIME olf186-F UPSTREAM CG14490
2L	14001824	2L_14001824_SNP [dm3] 2L_14001824_SNP [dm6]	G	T	4.072e^-4	0.873	UPSTREAM rk INTERGENIC
2L	14001838	2L_14001838_SNP [dm3] 2L_14001838_SNP [dm6]	T	G	4.072e^-4	0.873	UPSTREAM rk INTERGENIC
2R	11806383	2R_11806383_SNP [dm3] 2R_15918878_SNP [dm6]	A	T	4.075e^-4	0.873	INTRON sli	TF binding site mE1_TFBS_HSA
3R	25257386	3R_25257386_SNP [dm3] 3R_29431664_SNP [dm6]	G	A	4.077e^-4	0.873	INTRON Ptp99A
3L	1847857	3L_1847857_SNP [dm3] 3L_1847857_SNP [dm6]	G	A	4.093e^-4	0.873	INTERGENIC
2R	781846	2R_781846_SNP [dm3] 2R_4894341_SNP [dm6]	A	G	4.095e^-4	0.873	INTERGENIC	transposable element FlyBase
2L	8793243	2L_8793243_SNP [dm3] 2L_8793243_SNP [dm6]	A	G	4.096e^-4	0.873	INTERGENIC
X	8006666	X_8006666_SNP [dm3] X_8112633_SNP [dm6]	C	T	4.111e^-4	0.873	INTRON Gclc
X	18156695	X_18156695_SNP [dm3] X_18262662_SNP [dm6]	C	A	4.122e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10808361	3R_10808361_SNP [dm3] 3R_14982639_SNP [dm6]	C	A	4.124e^-4	0.873	INTERGENIC
3L	14850828	3L_14850828_SNP [dm3] 3L_14857728_SNP [dm6]	G	T	4.129e^-4	0.873	INTRON CG17839
2L	5596734	2L_5596734_SNP [dm3] 2L_5596734_SNP [dm6]	T	C	4.137e^-4	0.873	UPSTREAM CG18266 INTERGENIC
3L	2414272	3L_2414272_SNP [dm3] 3L_2414272_SNP [dm6]	C	T	4.153e^-4	0.873	INTRON CG45186
2R	15248070	2R_15248070_SNP [dm3] 2R_19360565_SNP [dm6]	G	A	4.158e^-4	0.873	SYNONYMOUS_CODING CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18856435	3R_18856435_SNP [dm3] 3R_23030713_SNP [dm6]	C	T	4.158e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16176361	2R_16176361_SNP [dm3] 2R_20288856_SNP [dm6]	T	C	4.158e^-4	0.873	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo
X	8065792	X_8065792_SNP [dm3] X_8171759_SNP [dm6]	A	G	4.175e^-4	0.873	SYNONYMOUS_CODING slpr	TF binding site mE1_TFBS_chinmo
2L	8055627	2L_8055627_SNP [dm3] 2L_8055627_SNP [dm6]	G	C	4.178e^-4	0.873	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16572904	2L_16572904_SNP [dm3] 2L_16572904_SNP [dm6]	C	T	4.182e^-4	0.873	INTRON CG42389
2R	12225567	2R_12225567_SNP [dm3] 2R_16338062_SNP [dm6]	T	C	4.183e^-4	0.873	UPSTREAM Hmgs INTRON Hmgs	TF binding site mE1_TFBS_Trl
X	15966694	X_15966694_SNP [dm3] X_16072661_SNP [dm6]	C	A	4.185e^-4	0.873	INTRON Nipsnap	TF binding site BDTNP1_TFBS_dl
2L	12148402	2L_12148402_SNP [dm3] 2L_12148402_SNP [dm6]	G	T	4.190e^-4	0.873	INTRON CG31760
X	16292400	X_16292400_SNP [dm3] X_16398367_SNP [dm6]	T	C	4.190e^-4	0.873	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2L	848406	2L_848406_SNP [dm3] 2L_848406_SNP [dm6]	C	T	4.191e^-4	0.873	INTRON drongo	TF binding site mE1_TFBS_sens
3L	1363632	3L_1363632_DEL [dm3] 3L_1363632_DEL [dm6]	CC	C	4.194e^-4	0.873	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9918404	2L_9918404_SNP [dm3] 2L_9918404_SNP [dm6]	G	T	4.194e^-4	0.873	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17794794	2R_17794794_SNP [dm3] 2R_21907289_SNP [dm6]	G	A	4.203e^-4	0.873	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17688669	2R_17688669_SNP [dm3] 2R_21801164_SNP [dm6]	G	A	4.205e^-4	0.873	UPSTREAM CG4386 INTERGENIC
3R	19030382	3R_19030382_DEL [dm3] 3R_23204660_DEL [dm6]	AAA	A	4.210e^-4	0.873	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	11650121	3L_11650121_SNP [dm3] 3L_11657021_SNP [dm6]	T	G	4.211e^-4	0.873	DOWNSTREAM mir-274 INTRON CG32085
2L	508615	2L_508615_SNP [dm3] 2L_508615_SNP [dm6]	G	A	4.216e^-4	0.873	INTRON ush
3L	3194279	3L_3194279_SNP [dm3] 3L_3194279_SNP [dm6]	G	C	4.221e^-4	0.873	INTRON Hsp83	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15248464	2R_15248464_SNP [dm3] 2R_19360959_SNP [dm6]	T	C	4.222e^-4	0.873	INTRON CG11961	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11322351	2L_11322351_SNP [dm3] 2L_11322351_SNP [dm6]	A	G	4.248e^-4	0.873	INTERGENIC
3R	16145832	3R_16145832_SNP [dm3] 3R_20320110_SNP [dm6]	C	A	4.254e^-4	0.873	INTRON CG42668
3R	16145837	3R_16145837_SNP [dm3] 3R_20320115_SNP [dm6]	A	G	4.254e^-4	0.873	INTRON CG42668
2R	3174505	2R_3174505_SNP [dm3] 2R_7287000_SNP [dm6]	A	C	4.254e^-4	0.873	INTRON pwn
2R	4329552	2R_4329552_SNP [dm3] 2R_8442047_SNP [dm6]	C	G	4.259e^-4	0.873	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
3R	25474836	3R_25474836_SNP [dm3] 3R_29649114_SNP [dm6]	C	T	4.260e^-4	0.873	INTRON Dop1R2
3R	14023481	3R_14023481_SNP [dm3] 3R_18197759_SNP [dm6]	G	T	4.263e^-4	0.873	INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16765410	X_16765410_SNP [dm3] X_16871377_SNP [dm6]	C	T	4.265e^-4	0.873	INTRON CG13003
2R	6082613	2R_6082613_INS [dm3] 2R_10195108_INS [dm6]	A	AGGTA	4.275e^-4	0.873	INTERGENIC
2L	4825367	2L_4825367_SNP [dm3] 2L_4825367_SNP [dm6]	G	A	4.290e^-4	0.873	INTRON CG15628
2L	4825370	2L_4825370_MNP [dm3] 2L_4825370_MNP [dm6]	CTC	TCA	4.290e^-4	0.873	INTRON CG15628
2L	20392525	2L_20392525_SNP [dm3] 2L_20392525_SNP [dm6]	T	A	4.301e^-4	0.873	INTRON CG10947
X	11856450	X_11856450_SNP [dm3] X_11962417_SNP [dm6]	C	T	4.301e^-4	0.873	INTRON cac
3R	12497071	3R_12497071_SNP [dm3] 3R_16671349_SNP [dm6]	G	A	4.302e^-4	0.873	INTRON Ubx
3L	16420090	3L_16420090_SNP [dm3] 3L_16426990_SNP [dm6]	C	T	4.309e^-4	0.873	INTRON CG33158 & 1 other
2L	10116648	2L_10116648_SNP [dm3] 2L_10116648_SNP [dm6]	G	A	4.317e^-4	0.873	INTRON CG44153 & 1 other
3L	13434415	3L_13434415_SNP [dm3] 3L_13441315_SNP [dm6]	A	G	4.324e^-4	0.873	UPSTREAM CG10140 INTRON CG14109
2L	10292976	2L_10292976_SNP [dm3] 2L_10292976_SNP [dm6]	C	G	4.325e^-4	0.873	UPSTREAM CG5604 INTRON Hand	regulatory region REDfly_CRMs
2R	5562333	2R_5562333_SNP [dm3] 2R_9674828_SNP [dm6]	C	T	4.331e^-4	0.873	INTRON Mmp2	TF binding site mE1_TFBS_inv
2L	10288756	2L_10288756_SNP [dm3] 2L_10288756_SNP [dm6]	C	G	4.335e^-4	0.873	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3R	15092897	3R_15092897_SNP [dm3] 3R_19267175_SNP [dm6]	G	A	4.336e^-4	0.873	INTERGENIC
X	21280309	X_21280309_SNP [dm3] X_21409282_SNP [dm6]	C	T	4.337e^-4	0.873	DOWNSTREAM CR45003 INTERGENIC
2L	17837491	2L_17837491_SNP [dm3] 2L_17837491_SNP [dm6]	A	G	4.349e^-4	0.873	INTRON CadN2
3R	26020133	3R_26020133_SNP [dm3] 3R_30194411_SNP [dm6]	T	C	4.350e^-4	0.873	DOWNSTREAM CG15531 INTERGENIC
2L	11465122	2L_11465122_SNP [dm3] 2L_11465122_SNP [dm6]	T	C	4.351e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	14892452	3L_14892452_SNP [dm3] 3L_14899352_SNP [dm6]	G	C	4.352e^-4	0.873	INTERGENIC
2R	17865608	2R_17865608_SNP [dm3] 2R_21978103_SNP [dm6]	G	A	4.355e^-4	0.873	DOWNSTREAM Gr58b & 1 other INTERGENIC
3R	17527022	3R_17527022_SNP [dm3] 3R_21701300_SNP [dm6]	A	C	4.365e^-4	0.873	INTRON CG31176
3R	20939053	3R_20939053_SNP [dm3] 3R_25113331_SNP [dm6]	C	T	4.378e^-4	0.873	SYNONYMOUS_CODING CG31108 UPSTREAM CG13650
2R	18550922	2R_18550922_SNP [dm3] 2R_22663417_SNP [dm6]	C	A	4.389e^-4	0.873	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
X	18640297	X_18640297_SNP [dm3] X_18746264_SNP [dm6]	T	C	4.405e^-4	0.873	DOWNSTREAM CG12609 INTERGENIC
X	9762180	X_9762180_SNP [dm3] X_9868147_SNP [dm6]	A	T	4.409e^-4	0.873	UTR_3_PRIME CG45060
2R	16114584	2R_16114584_SNP [dm3] 2R_20227079_SNP [dm6]	G	C	4.411e^-4	0.873	INTERGENIC
2R	12301146	2R_12301146_SNP [dm3] 2R_16413641_SNP [dm6]	A	G	4.413e^-4	0.873	INTRON Sema-2b
2R	17691505	2R_17691505_SNP [dm3] 2R_21804000_SNP [dm6]	T	A	4.419e^-4	0.873	EXON CR9284
2L	12148366	2L_12148366_SNP [dm3] 2L_12148366_SNP [dm6]	T	A	4.423e^-4	0.873	INTRON CG31760
X	18733734	X_18733734_SNP [dm3] X_18839701_SNP [dm6]	C	T	4.423e^-4	0.873	INTRON Pvf1
2L	6025707	2L_6025707_SNP [dm3] 2L_6025707_SNP [dm6]	C	A	4.424e^-4	0.873	DOWNSTREAM CG9109 INTERGENIC
2L	9363552	2L_9363552_SNP [dm3] 2L_9363552_SNP [dm6]	G	A	4.426e^-4	0.873	UPSTREAM CR43404 INTERGENIC
2R	10819815	2R_10819815_SNP [dm3] 2R_14932310_SNP [dm6]	A	G	4.442e^-4	0.873	SYNONYMOUS_CODING CG10253
2L	12993858	2L_12993858_SNP [dm3] 2L_12993858_SNP [dm6]	T	G	4.449e^-4	0.873	UTR_3_PRIME CG12404
2L	7668491	2L_7668491_SNP [dm3] 2L_7668491_SNP [dm6]	A	T	4.449e^-4	0.873	INTRON Slob & 1 other
2L	581667	2L_581667_SNP [dm3] 2L_581667_SNP [dm6]	A	T	4.455e^-4	0.873	INTERGENIC
3L	10886517	3L_10886517_SNP [dm3] 3L_10893417_SNP [dm6]	G	A	4.463e^-4	0.873	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	10829917	2L_10829917_INS [dm3] 2L_10829917_INS [dm6]	T	TGGCCTTCCCCATTATTAAC...	4.464e^-4	0.873	INTRON Nos
2R	3442689	2R_3442689_SNP [dm3] 2R_7555184_SNP [dm6]	C	G	4.468e^-4	0.873	SYNONYMOUS_CODING Corin
3L	7099827	3L_7099827_SNP [dm3] 3L_7106727_SNP [dm6]	A	G	4.472e^-4	0.873	INTRON form3
2L	1452260	2L_1452260_SNP [dm3] 2L_1452260_SNP [dm6]	G	A	4.479e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13612893	2L_13612893_SNP [dm3] 2L_13612893_SNP [dm6]	A	T	4.482e^-4	0.873	INTRON kuz
2L	10723757	2L_10723757_SNP [dm3] 2L_10723757_SNP [dm6]	T	A	4.483e^-4	0.873	UPSTREAM CG6431 INTERGENIC
3L	15935877	3L_15935877_SNP [dm3] 3L_15942777_SNP [dm6]	T	A	4.490e^-4	0.873	INTRON Pka-C3
2L	3328443	2L_3328443_SNP [dm3] 2L_3328443_SNP [dm6]	T	A	4.490e^-4	0.873	SYNONYMOUS_CODING CG33282
3R	20324913	3R_20324913_SNP [dm3] 3R_24499191_SNP [dm6]	A	T	4.490e^-4	0.873	INTERGENIC
2L	956552	2L_956552_SNP [dm3] 2L_956552_SNP [dm6]	G	A	4.498e^-4	0.873	SYNONYMOUS_CODING CG4341
X	3902732	X_3902732_SNP [dm3] X_4008699_SNP [dm6]	A	G	4.501e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21028211	2L_21028211_SNP [dm3] 2L_21028211_SNP [dm6]	C	A	4.515e^-4	0.873	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6438038	3R_6438038_SNP [dm3] 3R_10612316_SNP [dm6]	A	C	4.517e^-4	0.873	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12148425	2L_12148425_SNP [dm3] 2L_12148425_SNP [dm6]	T	A	4.520e^-4	0.873	INTRON CG31760
3R	18589869	3R_18589869_SNP [dm3] 3R_22764147_SNP [dm6]	C	T	4.521e^-4	0.873	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
X	13451777	X_13451777_SNP [dm3] X_13557744_SNP [dm6]	G	A	4.529e^-4	0.873	UTR_3_PRIME CG32631
3L	11196587	3L_11196587_SNP [dm3] 3L_11203487_SNP [dm6]	C	T	4.534e^-4	0.873	INTRON Plod
2L	901405	2L_901405_SNP [dm3] 2L_901405_SNP [dm6]	G	T	4.537e^-4	0.873	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	13268231	2L_13268231_SNP [dm3] 2L_13268231_SNP [dm6]	C	T	4.540e^-4	0.873	INTRON CG44085
2L	10723682	2L_10723682_SNP [dm3] 2L_10723682_SNP [dm6]	T	A	4.552e^-4	0.873	UPSTREAM CG6431 INTERGENIC
2L	4361140	2L_4361140_SNP [dm3] 2L_4361140_SNP [dm6]	A	G	4.559e^-4	0.873	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8622950	2L_8622950_SNP [dm3] 2L_8622950_SNP [dm6]	A	G	4.563e^-4	0.873	INTRON Sema-1a
2L	6756059	2L_6756059_SNP [dm3] 2L_6756059_SNP [dm6]	A	T	4.565e^-4	0.873	UTR_3_PRIME CG11221 DOWNSTREAM CG11221
2L	5596720	2L_5596720_INS [dm3] 2L_5596720_INS [dm6]	T	TTTAGTAAACAAAAGAAGGA...	4.570e^-4	0.873	UPSTREAM CG18266 INTERGENIC
3R	15312711	3R_15312711_SNP [dm3] 3R_19486989_SNP [dm6]	C	T	4.580e^-4	0.873	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13959865	3R_13959865_SNP [dm3] 3R_18134143_SNP [dm6]	A	T	4.581e^-4	0.873	UTR_3_PRIME sr DOWNSTREAM sr
X	7884495	X_7884495_SNP [dm3] X_7990462_SNP [dm6]	C	A	4.585e^-4	0.873	INTERGENIC
2R	14998841	2R_14998841_SNP [dm3] 2R_19111336_SNP [dm6]	C	T	4.585e^-4	0.873	INTRON 5-HT1A
2R	11834601	2R_11834601_INS [dm3] 2R_15947096_INS [dm6]	G	GGGTGTGCG	4.592e^-4	0.873	UTR_3_PRIME Cyp4aa1 & 1 other
3L	8258648	3L_8258648_SNP [dm3] 3L_8265548_SNP [dm6]	G	A	4.601e^-4	0.873	INTRON Dscam4
3R	15023884	3R_15023884_SNP [dm3] 3R_19198162_SNP [dm6]	G	C	4.613e^-4	0.873	INTRON CG31475
3R	22553995	3R_22553995_SNP [dm3] 3R_26728273_SNP [dm6]	G	T	4.623e^-4	0.873	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
2L	4224140	2L_4224140_SNP [dm3] 2L_4224140_SNP [dm6]	T	C	4.637e^-4	0.873	DOWNSTREAM CG3702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16114726	2R_16114726_SNP [dm3] 2R_20227221_SNP [dm6]	A	G	4.642e^-4	0.873	INTERGENIC
2L	901487	2L_901487_SNP [dm3] 2L_901487_SNP [dm6]	G	A	4.645e^-4	0.873	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8579422	3R_8579422_SNP [dm3] 3R_12753700_SNP [dm6]	C	T	4.649e^-4	0.873	INTRON beat-Vc
2L	5596729	2L_5596729_SNP [dm3] 2L_5596729_SNP [dm6]	G	A	4.656e^-4	0.873	UPSTREAM CG18266 INTERGENIC
2R	19286691	2R_19286691_SNP [dm3] 2R_23399168_SNP [dm6]	C	T	4.658e^-4	0.873	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19286755	2R_19286755_SNP [dm3] 2R_23399232_SNP [dm6]	G	A	4.658e^-4	0.873	INTRON CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13984635	3R_13984635_SNP [dm3] 3R_18158913_SNP [dm6]	A	T	4.660e^-4	0.873	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3R	26024761	3R_26024761_SNP [dm3] 3R_30199039_SNP [dm6]	C	G	4.668e^-4	0.873	INTRON CG9743	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26080626	3R_26080626_SNP [dm3] 3R_30254904_SNP [dm6]	T	C	4.676e^-4	0.873	DOWNSTREAM CG18404 INTERGENIC
3L	16533655	3L_16533655_SNP [dm3] 3L_16540555_SNP [dm6]	C	T	4.677e^-4	0.873	INTRON CG43373
3R	13026585	3R_13026585_SNP [dm3] 3R_17200863_SNP [dm6]	T	A	4.679e^-4	0.873	INTRON Mur89F
2R	10265391	2R_10265391_SNP [dm3] 2R_14377886_SNP [dm6]	T	A	4.692e^-4	0.873	UPSTREAM Dh44-R1 INTERGENIC
2R	3679618	2R_3679618_SNP [dm3] 2R_7792113_SNP [dm6]	T	G	4.693e^-4	0.873	UTR_3_PRIME Gapdh1 DOWNSTREAM CG12824	TF binding site mE1_TFBS_HSA
3R	25778486	3R_25778486_SNP [dm3] 3R_29952764_SNP [dm6]	G	A	4.696e^-4	0.873	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
2L	7686150	2L_7686150_SNP [dm3] 2L_7686150_SNP [dm6]	G	C	4.698e^-4	0.873	NON_SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
3L	2360610	3L_2360610_SNP [dm3] 3L_2360610_SNP [dm6]	T	A	4.707e^-4	0.873	SYNONYMOUS_CODING CG13801
3L	15523191	3L_15523191_SNP [dm3] 3L_15530091_SNP [dm6]	A	C	4.712e^-4	0.873	UTR_3_PRIME CG43248 UPSTREAM obst-H
2L	7088871	2L_7088871_SNP [dm3] 2L_7088871_SNP [dm6]	C	T	4.716e^-4	0.873	INTERGENIC
3R	21753978	3R_21753978_SNP [dm3] 3R_25928256_SNP [dm6]	T	G	4.717e^-4	0.873	INTRON CCAP-R
X	20005082	X_20005082_SNP [dm3] X_20111049_SNP [dm6]	T	C	4.720e^-4	0.873	UPSTREAM karr INTERGENIC	transposable element FlyBase
3R	26035248	3R_26035248_SNP [dm3] 3R_30209526_SNP [dm6]	G	A	4.729e^-4	0.873	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17255971	3L_17255971_SNP [dm3] 3L_17262871_SNP [dm6]	T	C	4.735e^-4	0.873	INTRON CR43870
3R	19070234	3R_19070234_SNP [dm3] 3R_23244512_SNP [dm6]	A	G	4.735e^-4	0.873	INTRON CG4467
2R	12320726	2R_12320726_SNP [dm3] 2R_16433221_SNP [dm6]	T	A	4.744e^-4	0.873	DOWNSTREAM CG7848 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19793565	2R_19793565_SNP [dm3] 2R_23906042_SNP [dm6]	A	G	4.745e^-4	0.873	DOWNSTREAM CG13562 INTRON Nap1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_jumu mE1_TFBS_sens
3L	13082467	3L_13082467_SNP [dm3] 3L_13089367_SNP [dm6]	C	T	4.771e^-4	0.873	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13611429	2L_13611429_SNP [dm3] 2L_13611429_SNP [dm6]	G	A	4.778e^-4	0.873	INTRON kuz
X	7888638	X_7888638_SNP [dm3] X_7994605_SNP [dm6]	G	A	4.782e^-4	0.873	INTERGENIC
X	7889003	X_7889003_SNP [dm3] X_7994970_SNP [dm6]	C	G	4.782e^-4	0.873	UPSTREAM Tbh INTERGENIC
2L	12148502	2L_12148502_SNP [dm3] 2L_12148502_SNP [dm6]	A	G	4.788e^-4	0.873	INTRON CG31760
3L	7151109	3L_7151109_SNP [dm3] 3L_7158009_SNP [dm6]	A	G	4.788e^-4	0.873	UPSTREAM corn & 1 other INTERGENIC
2R	8446800	2R_8446800_SNP [dm3] 2R_12559295_SNP [dm6]	G	A	4.797e^-4	0.873	INTRON fra
3L	1343741	3L_1343741_SNP [dm3] 3L_1343741_SNP [dm6]	G	C	4.798e^-4	0.873	UTR_3_PRIME Ptp61F DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3L	5495302	3L_5495302_SNP [dm3] 3L_5502202_SNP [dm6]	C	A	4.801e^-4	0.873	UPSTREAM CR44519 INTERGENIC
X	7883706	X_7883706_SNP [dm3] X_7989673_SNP [dm6]	T	A	4.802e^-4	0.873	INTERGENIC
2R	14270076	2R_14270076_SNP [dm3] 2R_18382571_SNP [dm6]	A	T	4.803e^-4	0.873	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
X	14615024	X_14615024_INS [dm3] X_14720991_INS [dm6]	A	ATTGTCTTACTA...	4.804e^-4	0.873	INTRON NetB
X	15421312	X_15421312_SNP [dm3] X_15527279_SNP [dm6]	C	T	4.806e^-4	0.873	INTRON Ac13E
2R	13297075	2R_13297075_SNP [dm3] 2R_17409570_SNP [dm6]	A	G	4.809e^-4	0.873	SYNONYMOUS_CODING CG30101	TF binding site mE1_TFBS_HSA
2R	17126515	2R_17126515_SNP [dm3] 2R_21239010_SNP [dm6]	C	G	4.810e^-4	0.873	INTRON ASPP
3R	16441782	3R_16441782_INS [dm3] 3R_20616060_INS [dm6]	T	TTTTAGTTTT	4.816e^-4	0.873	INTRON CG15923
2R	16988609	2R_16988609_SNP [dm3] 2R_21101104_SNP [dm6]	A	C	4.829e^-4	0.873	SYNONYMOUS_CODING CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	17358273	3R_17358273_SNP [dm3] 3R_21532551_SNP [dm6]	G	A	4.836e^-4	0.873	INTRON CR43372
3L	1110145	3L_1110145_SNP [dm3] 3L_1110145_SNP [dm6]	G	A	4.837e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	21280242	X_21280242_SNP [dm3] X_21409215_SNP [dm6]	A	C	4.842e^-4	0.873	DOWNSTREAM CR45003 INTERGENIC
2L	7187873	2L_7187873_SNP [dm3] 2L_7187873_SNP [dm6]	A	G	4.848e^-4	0.873	INTRON CG4496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6100552	X_6100552_SNP [dm3] X_6206519_SNP [dm6]	T	C	4.848e^-4	0.873	INTERGENIC
3L	21762552	3L_21762552_SNP [dm3] 3L_21769452_SNP [dm6]	G	A	4.851e^-4	0.873	UPSTREAM CG7370 INTRON Syn1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20342576	X_20342576_INS [dm3] X_20471549_INS [dm6]	G	GTAG	4.856e^-4	0.873	UTR_3_PRIME RhoGAP19D DOWNSTREAM RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3L	6374323	3L_6374323_SNP [dm3] 3L_6381223_SNP [dm6]	A	C	4.856e^-4	0.873	INTERGENIC
2R	15213870	2R_15213870_SNP [dm3] 2R_19326365_SNP [dm6]	G	A	4.860e^-4	0.873	SYNONYMOUS_CODING Rgk1 UPSTREAM Rgk1	TF binding site mE1_TFBS_chinmo
2L	9363336	2L_9363336_SNP [dm3] 2L_9363336_SNP [dm6]	A	G	4.861e^-4	0.873	UPSTREAM CR43404 INTERGENIC
2L	2276236	2L_2276236_SNP [dm3] 2L_2276236_SNP [dm6]	C	T	4.863e^-4	0.873	INTRON CR43753 EXON CR43753
2L	7332920	2L_7332920_SNP [dm3] 2L_7332920_SNP [dm6]	C	A	4.866e^-4	0.873	UPSTREAM Wnt6 INTERGENIC
3R	26030288	3R_26030288_SNP [dm3] 3R_30204566_SNP [dm6]	T	C	4.871e^-4	0.873	INTERGENIC
2R	7429781	2R_7429781_SNP [dm3] 2R_11542276_SNP [dm6]	G	T	4.876e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10873512	2R_10873512_SNP [dm3] 2R_14986007_SNP [dm6]	A	C	4.881e^-4	0.873	INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13434402	3L_13434402_SNP [dm3] 3L_13441302_SNP [dm6]	T	C	4.891e^-4	0.873	UPSTREAM CG10140 INTRON CG14109
X	14332885	X_14332885_SNP [dm3] X_14438852_SNP [dm6]	T	C	4.901e^-4	0.873	INTRON dpr8
2R	8446883	2R_8446883_SNP [dm3] 2R_12559378_SNP [dm6]	C	T	4.903e^-4	0.873	INTRON fra

By genomic position
Variant impact
Gene name

pc_Surv_PRettgeri phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results