DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.959e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	4.9682	0.0834

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2060 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	6702868	2L_6702868_SNP [dm3] 2L_6702868_SNP [dm6]	T	A	1.824e^-6	0.746	INTRON Tsp
2L	18111247	2L_18111247_SNP [dm3] 2L_18111247_SNP [dm6]	C	A	2.327e^-6	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15310674	3R_15310674_SNP [dm3] 3R_19484952_SNP [dm6]	G	T	3.780e^-6	0.746	SPLICE_SITE_REGION Dys INTRON Dys
3R	23990561	3R_23990561_SNP [dm3] 3R_28164839_SNP [dm6]	G	T	5.305e^-6	0.746	INTRON CG34354
X	3926433	X_3926433_SNP [dm3] X_4032400_SNP [dm6]	C	T	5.449e^-6	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24599480	3R_24599480_SNP [dm3] 3R_28773758_SNP [dm6]	C	A	5.578e^-6	0.746	INTERGENIC
3R	23422545	3R_23422545_SNP [dm3] 3R_27596823_SNP [dm6]	G	A	5.697e^-6	0.746	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
2R	7996108	2R_7996108_SNP [dm3] 2R_12108603_SNP [dm6]	G	T	6.034e^-6	0.746	INTRON jeb	TF binding site BDTNP1_TFBS_sna
X	19865603	X_19865603_SNP [dm3] X_19971570_SNP [dm6]	A	G	6.384e^-6	0.746	INTERGENIC
2R	7991412	2R_7991412_SNP [dm3] 2R_12103907_SNP [dm6]	G	A	7.225e^-6	0.746	INTRON jeb
2R	9531388	2R_9531388_SNP [dm3] 2R_13643883_SNP [dm6]	T	A	8.299e^-6	0.746	INTRON fas
3L	13734310	3L_13734310_SNP [dm3] 3L_13741210_SNP [dm6]	C	A	9.248e^-6	0.746	INTRON bru-3
2R	9531292	2R_9531292_SNP [dm3] 2R_13643787_SNP [dm6]	C	A	9.769e^-6	0.746	UTR_5_PRIME fas INTRON fas
3R	24599415	3R_24599415_SNP [dm3] 3R_28773693_SNP [dm6]	T	G	9.786e^-6	0.746	INTERGENIC
X	22110237	X_22110237_SNP [dm3] X_22708401_SNP [dm6]	C	T	9.805e^-6	0.746	INTRON CR44997
2L	11226056	2L_11226056_SNP [dm3] 2L_11226056_SNP [dm6]	G	T	1.090e^-5	0.746	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12510535	2R_12510535_SNP [dm3] 2R_16623030_SNP [dm6]	T	C	1.107e^-5	0.746	SYNONYMOUS_CODING CG5065	TF binding site mE1_TFBS_cad
3L	13630289	3L_13630289_DEL [dm3] 3L_13637189_DEL [dm6]	GCGA	G	1.136e^-5	0.746	INTRON bru-3
2R	7311185	2R_7311185_SNP [dm3] 2R_11423680_SNP [dm6]	A	G	1.161e^-5	0.746	INTRON Drip
3R	23990554	3R_23990554_SNP [dm3] 3R_28164832_SNP [dm6]	G	A	1.178e^-5	0.746	INTRON CG34354
X	3054211	X_3054211_SNP [dm3] X_3160178_SNP [dm6]	T	A	1.185e^-5	0.746	INTRON N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	605825	3L_605825_SNP [dm3] 3L_605825_SNP [dm6]	A	T	1.187e^-5	0.746	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
3L	9147651	3L_9147651_SNP [dm3] 3L_9154551_SNP [dm6]	A	G	1.269e^-5	0.746	INTRON Rdl
2R	4927960	2R_4927960_SNP [dm3] 2R_9040455_SNP [dm6]	A	G	1.412e^-5	0.746	SYNONYMOUS_CODING Ance-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1813473	2R_1813473_SNP [dm3] 2R_5925968_SNP [dm6]	T	G	1.477e^-5	0.746	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12057497	2R_12057497_SNP [dm3] 2R_16169992_SNP [dm6]	C	T	1.579e^-5	0.746	SYNONYMOUS_CODING CG8435 DOWNSTREAM lbk	TF binding site mE1_TFBS_sens
3R	17956532	3R_17956532_SNP [dm3] 3R_22130810_SNP [dm6]	T	A	1.619e^-5	0.746	INTRON CG42390
3R	23902309	3R_23902309_SNP [dm3] 3R_28076587_SNP [dm6]	A	T	1.634e^-5	0.746	INTRON CG34362	TF binding site mE1_TFBS_inv
X	19108307	X_19108307_SNP [dm3] X_19214274_SNP [dm6]	G	A	1.681e^-5	0.746	SYNONYMOUS_CODING Mur18B	TF binding site mE1_TFBS_chinmo
3R	27020369	3R_27020369_INS [dm3] 3R_31194647_INS [dm6]	A	AGTTGCCTGA	1.784e^-5	0.746	DOWNSTREAM bnk INTRON mesh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	27000933	3R_27000933_SNP [dm3] 3R_31175211_SNP [dm6]	G	A	1.793e^-5	0.746	INTRON Gycbeta100B
3L	2961033	3L_2961033_SNP [dm3] 3L_2961033_SNP [dm6]	A	G	1.810e^-5	0.746	UTR_5_PRIME CG34025 UPSTREAM Or63a
2R	20172720	2R_20172720_SNP [dm3] 2R_24285197_SNP [dm6]	G	A	1.848e^-5	0.746	INTRON nvy
X	12385568	X_12385568_SNP [dm3] X_12491535_SNP [dm6]	C	T	1.894e^-5	0.746	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
3R	23291750	3R_23291750_SNP [dm3] 3R_27466028_SNP [dm6]	C	T	1.919e^-5	0.746	SYNONYMOUS_CODING CG13978
X	22104172	X_22104172_SNP [dm3] X_22702336_SNP [dm6]	C	A	1.938e^-5	0.746	INTRON CR44997	transposable element FlyBase
2L	12910571	2L_12910571_SNP [dm3] 2L_12910571_SNP [dm6]	G	T	1.951e^-5	0.746	INTERGENIC
3R	23422788	3R_23422788_SNP [dm3] 3R_27597066_SNP [dm6]	G	C	1.996e^-5	0.746	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
2R	9531330	2R_9531330_INS [dm3] 2R_13643825_INS [dm6]	T	TT	2.018e^-5	0.746	SPLICE_SITE_REGION fas INTRON fas
3R	23291754	3R_23291754_SNP [dm3] 3R_27466032_SNP [dm6]	C	T	2.063e^-5	0.746	SYNONYMOUS_CODING CG13978
3L	13831322	3L_13831322_SNP [dm3] 3L_13838222_SNP [dm6]	A	T	2.064e^-5	0.746	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8697767	2L_8697767_SNP [dm3] 2L_8697767_SNP [dm6]	T	C	2.094e^-5	0.746	INTRON Hnf4
3R	17956528	3R_17956528_SNP [dm3] 3R_22130806_SNP [dm6]	A	G	2.129e^-5	0.746	INTRON CG42390
2R	11346097	2R_11346097_SNP [dm3] 2R_15458592_SNP [dm6]	T	G	2.229e^-5	0.746	INTRON CG43729
3R	23865593	3R_23865593_SNP [dm3] 3R_28039871_SNP [dm6]	C	T	2.247e^-5	0.746	INTRON CG34362
2L	18110300	2L_18110300_SNP [dm3] 2L_18110300_SNP [dm6]	C	T	2.280e^-5	0.746	INTERGENIC
3R	17956533	3R_17956533_SNP [dm3] 3R_22130811_SNP [dm6]	G	A	2.412e^-5	0.746	INTRON CG42390
3L	13831316	3L_13831316_SNP [dm3] 3L_13838216_SNP [dm6]	A	G	2.473e^-5	0.746	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11777879	3R_11777879_SNP [dm3] 3R_15952157_SNP [dm6]	T	C	2.493e^-5	0.746	INTRON Sap47	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	5160237	2L_5160237_SNP [dm3] 2L_5160237_SNP [dm6]	C	G	2.719e^-5	0.746	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13740233	3L_13740233_SNP [dm3] 3L_13747133_SNP [dm6]	T	G	2.795e^-5	0.746	INTRON bru-3
2L	16217541	2L_16217541_SNP [dm3] 2L_16217541_SNP [dm6]	G	A	2.800e^-5	0.746	UPSTREAM CR43840 INTERGENIC
3L	13630288	3L_13630288_SNP [dm3] 3L_13637188_SNP [dm6]	A	G	2.820e^-5	0.746	INTRON bru-3
X	17324967	X_17324967_SNP [dm3] X_17430934_SNP [dm6]	C	T	2.822e^-5	0.746	INTRON CG12994
2R	9531353	2R_9531353_SNP [dm3] 2R_13643848_SNP [dm6]	T	C	2.846e^-5	0.746	INTRON fas
2L	5921731	2L_5921731_SNP [dm3] 2L_5921731_SNP [dm6]	A	C	2.858e^-5	0.746	UTR_3_PRIME bchs
X	1341783	X_1341783_SNP [dm3] X_1447750_SNP [dm6]	C	G	2.864e^-5	0.746	SYNONYMOUS_CODING futsch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9229576	2R_9229576_MNP [dm3] 2R_13342071_MNP [dm6]	CGTTT	AAACG	2.897e^-5	0.746	INTRON CR44206	TF binding site BDTNP1_TFBS_twi
3L	2200836	3L_2200836_SNP [dm3] 3L_2200836_SNP [dm6]	T	A	2.903e^-5	0.746	INTERGENIC
2R	11296544	2R_11296544_SNP [dm3] 2R_15409039_SNP [dm6]	A	G	2.912e^-5	0.746	UTR_3_PRIME Mtk INTRON CG43729
X	3055641	X_3055641_SNP [dm3] X_3161608_SNP [dm6]	A	G	2.941e^-5	0.746	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20093434	3R_20093434_SNP [dm3] 3R_24267712_SNP [dm6]	G	A	2.958e^-5	0.746	INTRON jar	TF binding site BDTNP1_TFBS_twi
3R	19584198	3R_19584198_SNP [dm3] 3R_23758476_SNP [dm6]	T	A	2.967e^-5	0.746	START_GAINED Hrd3 UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	10751898	3L_10751898_SNP [dm3] 3L_10758798_SNP [dm6]	A	T	3.024e^-5	0.746	INTERGENIC
3L	9326372	3L_9326372_SNP [dm3] 3L_9333272_SNP [dm6]	T	A	3.084e^-5	0.746	INTERGENIC
X	3057450	X_3057450_INS [dm3] X_3163417_INS [dm6]	A	AA	3.092e^-5	0.746	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13347624	2L_13347624_DEL [dm3] 2L_13347624_DEL [dm6]	CC	C	3.113e^-5	0.746	UPSTREAM CG16826 INTERGENIC
2L	11007914	2L_11007914_SNP [dm3] 2L_11007914_SNP [dm6]	G	A	3.127e^-5	0.746	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6651075	2R_6651075_SNP [dm3] 2R_10763570_SNP [dm6]	T	C	3.130e^-5	0.746	INTRON CG33144
3L	8145691	3L_8145691_SNP [dm3] 3L_8152591_SNP [dm6]	T	C	3.145e^-5	0.746	UPSTREAM CG13676 INTERGENIC
3R	23977892	3R_23977892_SNP [dm3] 3R_28152170_SNP [dm6]	T	G	3.168e^-5	0.746	INTRON CG34354
3R	23421627	3R_23421627_SNP [dm3] 3R_27595905_SNP [dm6]	T	A	3.187e^-5	0.746	UTR_5_PRIME CG5639	TF binding site mE1_TFBS_inv
2L	18110502	2L_18110502_SNP [dm3] 2L_18110502_SNP [dm6]	A	G	3.214e^-5	0.746	INTERGENIC
2R	11706874	2R_11706874_SNP [dm3] 2R_15819369_SNP [dm6]	G	A	3.232e^-5	0.746	SYNONYMOUS_CODING CG33465 INTRON tun
3L	13864615	3L_13864615_SNP [dm3] 3L_13871515_SNP [dm6]	A	T	3.248e^-5	0.746	UTR_3_PRIME dysc
2R	6651134	2R_6651134_SNP [dm3] 2R_10763629_SNP [dm6]	G	A	3.253e^-5	0.746	INTRON CG33144
2R	1813054	2R_1813054_SNP [dm3] 2R_5925549_SNP [dm6]	G	T	3.291e^-5	0.746	SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad
2L	11226037	2L_11226037_SNP [dm3] 2L_11226037_SNP [dm6]	G	T	3.292e^-5	0.746	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5287562	2R_5287562_SNP [dm3] 2R_9400057_SNP [dm6]	C	G	3.371e^-5	0.746	UTR_5_PRIME CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2R	1813542	2R_1813542_SNP [dm3] 2R_5926037_SNP [dm6]	A	C	3.397e^-5	0.746	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7958771	2R_7958771_SNP [dm3] 2R_12071266_SNP [dm6]	C	T	3.526e^-5	0.746	INTRON CG8888
2L	12915658	2L_12915658_SNP [dm3] 2L_12915658_SNP [dm6]	C	G	3.532e^-5	0.746	INTRON ACXC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12646530	3L_12646530_SNP [dm3] 3L_12653430_SNP [dm6]	C	G	3.613e^-5	0.746	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19595279	3L_19595279_DEL [dm3] 3L_19602179_DEL [dm6]	CACTTGT	C	3.675e^-5	0.746	UTR_3_PRIME CG9368 DOWNSTREAM Taf6 INTRON CG9368
3R	23422569	3R_23422569_SNP [dm3] 3R_27596847_SNP [dm6]	C	T	3.709e^-5	0.746	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
2L	9255126	2L_9255126_SNP [dm3] 2L_9255126_SNP [dm6]	G	A	3.712e^-5	0.746	UPSTREAM lectin-30A INTERGENIC
2R	9532538	2R_9532538_SNP [dm3] 2R_13645033_SNP [dm6]	C	A	3.727e^-5	0.746	INTRON fas
3R	14729646	3R_14729646_SNP [dm3] 3R_18903924_SNP [dm6]	C	G	3.732e^-5	0.746	UPSTREAM CG34284 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10539701	2L_10539701_SNP [dm3] 2L_10539701_SNP [dm6]	C	T	3.742e^-5	0.746	INTERGENIC
2R	10471817	2R_10471817_SNP [dm3] 2R_14584312_SNP [dm6]	T	C	3.756e^-5	0.746	UTR_3_PRIME ttv
3L	13630286	3L_13630286_SNP [dm3] 3L_13637186_SNP [dm6]	A	G	3.758e^-5	0.746	INTRON bru-3
3L	13831298	3L_13831298_SNP [dm3] 3L_13838198_SNP [dm6]	C	T	3.770e^-5	0.746	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12918206	2L_12918206_SNP [dm3] 2L_12918206_SNP [dm6]	T	C	3.810e^-5	0.746	SYNONYMOUS_CODING ACXB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23421192	3R_23421192_SNP [dm3] 3R_27595470_SNP [dm6]	A	T	3.822e^-5	0.746	INTRON CG5639	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19108292	X_19108292_SNP [dm3] X_19214259_SNP [dm6]	T	C	3.855e^-5	0.746	SYNONYMOUS_CODING Mur18B	TF binding site mE1_TFBS_chinmo
3R	27020196	3R_27020196_SNP [dm3] 3R_31194474_SNP [dm6]	C	T	3.881e^-5	0.746	DOWNSTREAM bnk INTRON mesh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6099164	2L_6099164_SNP [dm3] 2L_6099164_SNP [dm6]	A	T	3.912e^-5	0.746	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18547272	3R_18547272_SNP [dm3] 3R_22721550_SNP [dm6]	A	T	3.913e^-5	0.746	SYNONYMOUS_CODING Irp-1A UPSTREAM wge	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10751689	3L_10751689_SNP [dm3] 3L_10758589_SNP [dm6]	G	A	3.972e^-5	0.746	INTERGENIC
3L	4614872	3L_4614872_SNP [dm3] 3L_4614872_SNP [dm6]	G	A	3.977e^-5	0.746	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11007917	2L_11007917_SNP [dm3] 2L_11007917_SNP [dm6]	T	C	4.166e^-5	0.761	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18073336	2L_18073336_INS [dm3] 2L_18073336_INS [dm6]	C	CAC	4.237e^-5	0.761	INTERGENIC
X	6965520	X_6965520_SNP [dm3] X_7071487_SNP [dm6]	A	G	4.308e^-5	0.761	SYNONYMOUS_CODING CG4607
3R	23421225	3R_23421225_SNP [dm3] 3R_27595503_SNP [dm6]	A	G	4.342e^-5	0.761	INTRON CG5639	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3657572	2L_3657572_SNP [dm3] 2L_3657572_SNP [dm6]	T	C	4.396e^-5	0.761	UPSTREAM for INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_zfh1
X	19108863	X_19108863_DEL [dm3] X_19214830_DEL [dm6]	CACGCTCC	C	4.396e^-5	0.761	UTR_3_PRIME Mur18B UPSTREAM Muc18B	TF binding site mE1_TFBS_chinmo
3R	23865493	3R_23865493_SNP [dm3] 3R_28039771_SNP [dm6]	A	T	4.421e^-5	0.761	INTRON CG34362
2R	10231982	2R_10231982_SNP [dm3] 2R_14344477_SNP [dm6]	T	C	4.421e^-5	0.761	INTRON Shroom
2L	17468113	2L_17468113_SNP [dm3] 2L_17468113_SNP [dm6]	T	C	4.429e^-5	0.761	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4518427	2L_4518427_SNP [dm3] 2L_4518427_SNP [dm6]	A	G	4.523e^-5	0.761	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27000942	3R_27000942_SNP [dm3] 3R_31175220_SNP [dm6]	C	T	4.535e^-5	0.761	INTRON Gycbeta100B
2R	7882313	2R_7882313_INS [dm3] 2R_11994808_INS [dm6]	G	GAGTACTCAGAAAATATAGA...	4.547e^-5	0.761	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
3R	24633645	3R_24633645_SNP [dm3] 3R_28807923_SNP [dm6]	T	A	4.718e^-5	0.768	DOWNSTREAM wdn & 1 other INTERGENIC
3L	10752152	3L_10752152_INS [dm3] 3L_10759052_INS [dm6]	T	CA	4.781e^-5	0.768	INTERGENIC
2L	17005217	2L_17005217_SNP [dm3] 2L_17005217_SNP [dm6]	T	C	4.805e^-5	0.768	INTERGENIC
2L	18590296	2L_18590296_SNP [dm3] 2L_18590296_SNP [dm6]	A	T	4.896e^-5	0.768	UPSTREAM CG15160 INTRON Pde11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1467401	3L_1467401_SNP [dm3] 3L_1467401_SNP [dm6]	C	A	4.898e^-5	0.768	UTR_3_PRIME rho INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	13466902	2R_13466902_SNP [dm3] 2R_17579397_SNP [dm6]	C	A	4.908e^-5	0.768	INTRON Dcr-2	TF binding site BDTNP1_TFBS_prd
X	3053963	X_3053963_SNP [dm3] X_3159930_SNP [dm6]	C	T	4.921e^-5	0.768	INTRON N	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	27020128	3R_27020128_DEL [dm3] 3R_31194406_DEL [dm6]	TAT	T	4.945e^-5	0.768	DOWNSTREAM bnk INTRON mesh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15764941	2L_15764941_SNP [dm3] 2L_15764941_SNP [dm6]	C	T	5.001e^-5	0.768	SYNONYMOUS_CODING CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3321336	2L_3321336_INS [dm3] 2L_3321336_INS [dm6]	T	TGTAT	5.003e^-5	0.768	INTRON CG8837	TF binding site mE1_TFBS_chinmo
3R	23421575	3R_23421575_SNP [dm3] 3R_27595853_SNP [dm6]	G	T	5.036e^-5	0.768	UTR_5_PRIME CG5639	TF binding site mE1_TFBS_inv
2R	7996063	2R_7996063_SNP [dm3] 2R_12108558_SNP [dm6]	T	C	5.102e^-5	0.772	INTRON jeb	TF binding site BDTNP1_TFBS_sna
3L	2691737	3L_2691737_SNP [dm3] 3L_2691737_SNP [dm6]	G	A	5.198e^-5	0.78	INTRON Fife
3L	13630665	3L_13630665_SNP [dm3] 3L_13637565_SNP [dm6]	A	G	5.267e^-5	0.78	INTRON bru-3
3R	25304086	3R_25304086_SNP [dm3] 3R_29478364_SNP [dm6]	T	G	5.318e^-5	0.78	UPSTREAM Ptp99A INTRON Ptp99A
2R	6273278	2R_6273278_SNP [dm3] 2R_10385773_SNP [dm6]	T	C	5.322e^-5	0.78	INTRON CG42732
2L	5160239	2L_5160239_SNP [dm3] 2L_5160239_SNP [dm6]	A	G	5.366e^-5	0.78	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19604748	3R_19604748_SNP [dm3] 3R_23779026_SNP [dm6]	G	A	5.461e^-5	0.788	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18547194	3R_18547194_SNP [dm3] 3R_22721472_SNP [dm6]	A	G	5.562e^-5	0.791	SYNONYMOUS_CODING Irp-1A UPSTREAM wge	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6702722	2L_6702722_SNP [dm3] 2L_6702722_SNP [dm6]	T	A	5.574e^-5	0.791	INTRON Tsp
X	14694535	X_14694535_SNP [dm3] X_14800502_SNP [dm6]	A	G	5.612e^-5	0.791	SYNONYMOUS_CODING rut
2R	19849976	2R_19849976_SNP [dm3] 2R_23962453_SNP [dm6]	A	G	5.825e^-5	0.815	UTR_5_PRIME CG13566 UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related
2R	9229582	2R_9229582_DEL [dm3] 2R_13342077_DEL [dm6]	CA	C	5.892e^-5	0.817	INTRON CR44206	TF binding site BDTNP1_TFBS_twi
3R	14611927	3R_14611927_SNP [dm3] 3R_18786205_SNP [dm6]	G	A	5.938e^-5	0.817	INTRON CG7720
2L	10241686	2L_10241686_SNP [dm3] 2L_10241686_SNP [dm6]	G	A	5.971e^-5	0.817	SYNONYMOUS_CODING me31B UPSTREAM CR44995 DOWNSTREAM chico	TF binding site mE1_TFBS_sens
3L	8804181	3L_8804181_SNP [dm3] 3L_8811081_SNP [dm6]	T	C	6.044e^-5	0.817	SYNONYMOUS_CODING CG13309	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15826102	2L_15826102_SNP [dm3] 2L_15826102_SNP [dm6]	G	T	6.052e^-5	0.817	INTERGENIC
3L	13859036	3L_13859036_SNP [dm3] 3L_13865936_SNP [dm6]	A	G	6.130e^-5	0.821	INTRON CG8745
3R	17016618	3R_17016618_SNP [dm3] 3R_21190896_SNP [dm6]	A	G	6.257e^-5	0.826	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5852139	X_5852139_SNP [dm3] X_5958106_SNP [dm6]	C	T	6.260e^-5	0.826	UTR_3_PRIME CG6067 DOWNSTREAM fs_1_M3
2R	17226748	2R_17226748_SNP [dm3] 2R_21339243_SNP [dm6]	T	C	6.299e^-5	0.826	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	22104603	X_22104603_SNP [dm3] X_22702767_SNP [dm6]	C	A	6.382e^-5	0.831	INTRON CR44997	transposable element FlyBase
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	6.459e^-5	0.833	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11124939	2L_11124939_SNP [dm3] 2L_11124939_SNP [dm6]	T	C	6.488e^-5	0.833	INTRON Nup160
3R	24633650	3R_24633650_SNP [dm3] 3R_28807928_SNP [dm6]	C	A	6.603e^-5	0.842	DOWNSTREAM wdn & 1 other INTERGENIC
2L	12913321	2L_12913321_SNP [dm3] 2L_12913321_SNP [dm6]	G	C	6.661e^-5	0.842	SYNONYMOUS_CODING ACXC
2L	4258638	2L_4258638_DEL [dm3] 2L_4258638_DEL [dm6]	ACTTAAGTCCTTAAA...	A	6.712e^-5	0.842	DOWNSTREAM CG15425 INTERGENIC
3L	13831312	3L_13831312_SNP [dm3] 3L_13838212_SNP [dm6]	G	T	6.840e^-5	0.842	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18664748	3R_18664748_SNP [dm3] 3R_22839026_SNP [dm6]	C	G	6.860e^-5	0.842	INTERGENIC
2L	18109190	2L_18109190_SNP [dm3] 2L_18109190_SNP [dm6]	T	C	6.869e^-5	0.842	INTERGENIC
2L	10410151	2L_10410151_SNP [dm3] 2L_10410151_SNP [dm6]	A	G	6.910e^-5	0.842	DOWNSTREAM CG5355 & 1 other INTRON RpS27A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12234397	3L_12234397_SNP [dm3] 3L_12241297_SNP [dm6]	A	G	6.971e^-5	0.842	INTRON app	TF binding site BDTNP1_TFBS_twi
2R	8743163	2R_8743163_SNP [dm3] 2R_12855658_SNP [dm6]	A	G	7.006e^-5	0.842	UPSTREAM CG17574 INTRON CG17574
X	10116998	X_10116998_SNP [dm3] X_10222965_SNP [dm6]	G	T	7.047e^-5	0.842	SYNONYMOUS_CODING CG34408 UTR_5_PRIME CG34408 INTRON CG34408
2R	14816692	2R_14816692_INS [dm3] 2R_18929187_INS [dm6]	T	TACAT	7.079e^-5	0.842	INTRON sano
3L	2200835	3L_2200835_SNP [dm3] 3L_2200835_SNP [dm6]	A	T	7.090e^-5	0.842	INTERGENIC
2R	4095231	2R_4095231_SNP [dm3] 2R_8207726_SNP [dm6]	A	G	7.272e^-5	0.853	INTRON LRP1
2R	14815313	2R_14815313_SNP [dm3] 2R_18927808_SNP [dm6]	A	G	7.274e^-5	0.853	INTRON sano
2R	8703413	2R_8703413_SNP [dm3] 2R_12815908_SNP [dm6]	G	A	7.352e^-5	0.856	INTERGENIC
X	7084129	X_7084129_SNP [dm3] X_7190096_SNP [dm6]	G	C	7.451e^-5	0.862	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3926446	X_3926446_SNP [dm3] X_4032413_SNP [dm6]	C	A	7.496e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1825660	2R_1825660_SNP [dm3] 2R_5938155_SNP [dm6]	C	G	7.705e^-5	0.873	INTRON CR44126	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9751538	3L_9751538_SNP [dm3] 3L_9758438_SNP [dm6]	A	G	7.793e^-5	0.873	INTRON CG42268
X	1342242	X_1342242_SNP [dm3] X_1448209_SNP [dm6]	A	G	7.831e^-5	0.873	SYNONYMOUS_CODING futsch	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24633635	3R_24633635_SNP [dm3] 3R_28807913_SNP [dm6]	C	T	7.835e^-5	0.873	DOWNSTREAM wdn & 1 other INTERGENIC
2R	13903740	2R_13903740_SNP [dm3] 2R_18016235_SNP [dm6]	T	G	7.898e^-5	0.873	INTERGENIC
2L	17005216	2L_17005216_SNP [dm3] 2L_17005216_SNP [dm6]	T	G	7.942e^-5	0.873	INTERGENIC
2L	15766112	2L_15766112_SNP [dm3] 2L_15766112_SNP [dm6]	C	A	8.095e^-5	0.873	UTR_3_PRIME CG3793 DOWNSTREAM wek
2R	1811261	2R_1811261_SNP [dm3] 2R_5923756_SNP [dm6]	T	A	8.138e^-5	0.873	INTRON CG43366	transposable element FlyBase
2R	15250022	2R_15250022_SNP [dm3] 2R_19362517_SNP [dm6]	G	T	8.195e^-5	0.873	UTR_3_PRIME CG11961 DOWNSTREAM CG11961
2L	3364066	2L_3364066_SNP [dm3] 2L_3364066_SNP [dm6]	G	A	8.231e^-5	0.873	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2961107	3L_2961107_SNP [dm3] 3L_2961107_SNP [dm6]	A	G	8.282e^-5	0.873	UPSTREAM Or63a & 1 other INTERGENIC
3L	13831277	3L_13831277_SNP [dm3] 3L_13838177_SNP [dm6]	C	G	8.355e^-5	0.873	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6584853	2L_6584853_SNP [dm3] 2L_6584853_SNP [dm6]	G	T	8.685e^-5	0.873	INTRON CG11319
3R	19586261	3R_19586261_SNP [dm3] 3R_23760539_SNP [dm6]	C	T	8.746e^-5	0.873	UTR_5_PRIME CG10219 DOWNSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17227663	3R_17227663_SNP [dm3] 3R_21401941_SNP [dm6]	G	T	8.755e^-5	0.873	NON_SYNONYMOUS_CODING CG43311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	8735301	2R_8735301_SNP [dm3] 2R_12847796_SNP [dm6]	C	T	8.778e^-5	0.873	SYNONYMOUS_CODING antr UPSTREAM CR45468 DOWNSTREAM CG30486
2R	12239796	2R_12239796_SNP [dm3] 2R_16352291_SNP [dm6]	C	T	8.783e^-5	0.873	INTERGENIC
3L	13952614	3L_13952614_INS [dm3] 3L_13959514_INS [dm6]	C	CC	8.798e^-5	0.873	INTRON CG32137
X	6217000	X_6217000_SNP [dm3] X_6322967_SNP [dm6]	C	T	8.880e^-5	0.873	INTRON CG15894
X	1342680	X_1342680_SNP [dm3] X_1448647_SNP [dm6]	A	C	8.910e^-5	0.873	SYNONYMOUS_CODING futsch	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23821714	3R_23821714_SNP [dm3] 3R_27995992_SNP [dm6]	C	T	8.924e^-5	0.873	INTERGENIC
2L	4270255	2L_4270255_INS [dm3] 2L_4270255_INS [dm6]	T	TT	9.006e^-5	0.873	INTERGENIC
3R	22051739	3R_22051739_SNP [dm3] 3R_26226017_SNP [dm6]	G	A	9.151e^-5	0.873	INTERGENIC
2L	12915654	2L_12915654_SNP [dm3] 2L_12915654_SNP [dm6]	T	A	9.210e^-5	0.873	INTRON ACXC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12915655	2L_12915655_SNP [dm3] 2L_12915655_SNP [dm6]	A	T	9.210e^-5	0.873	INTRON ACXC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15755994	3L_15755994_SNP [dm3] 3L_15762894_SNP [dm6]	T	A	9.218e^-5	0.873	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4524211	2L_4524211_SNP [dm3] 2L_4524211_SNP [dm6]	G	T	9.283e^-5	0.873	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23902143	3R_23902143_SNP [dm3] 3R_28076421_SNP [dm6]	C	T	9.296e^-5	0.873	INTRON CG34362	TF binding site mE1_TFBS_inv
2R	8691144	2R_8691144_SNP [dm3] 2R_12803639_SNP [dm6]	A	T	9.310e^-5	0.873	INTERGENIC
2L	15087890	2L_15087890_SNP [dm3] 2L_15087890_SNP [dm6]	G	A	9.355e^-5	0.873	INTRON CG15270
3L	13732387	3L_13732387_SNP [dm3] 3L_13739287_SNP [dm6]	C	A	9.387e^-5	0.873	INTRON bru-3
X	9434287	X_9434287_SNP [dm3] X_9540254_SNP [dm6]	A	C	9.563e^-5	0.873	INTRON CG32700
3R	23422560	3R_23422560_SNP [dm3] 3R_27596838_SNP [dm6]	T	G	9.577e^-5	0.873	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
2L	3321197	2L_3321197_SNP [dm3] 2L_3321197_SNP [dm6]	C	T	9.632e^-5	0.873	INTRON CG8837
2R	1877076	2R_1877076_SNP [dm3] 2R_5989571_SNP [dm6]	T	A	9.671e^-5	0.873	INTRON Src42A	transposable element FlyBase
2L	6294405	2L_6294405_SNP [dm3] 2L_6294405_SNP [dm6]	C	A	9.690e^-5	0.873	INTRON Ddr
3L	13765426	3L_13765426_SNP [dm3] 3L_13772326_SNP [dm6]	C	G	9.692e^-5	0.873	INTRON bru-3
X	1326715	X_1326715_SNP [dm3] X_1432682_SNP [dm6]	G	A	9.720e^-5	0.873	INTRON futsch	TF binding site mE1_TFBS_chinmo
X	1335668	X_1335668_SNP [dm3] X_1441635_SNP [dm6]	A	G	9.720e^-5	0.873	NON_SYNONYMOUS_CODING futsch
3L	10748901	3L_10748901_SNP [dm3] 3L_10755801_SNP [dm6]	A	C	9.758e^-5	0.873	INTERGENIC
2R	8743198	2R_8743198_SNP [dm3] 2R_12855693_SNP [dm6]	G	T	9.774e^-5	0.873	UPSTREAM CG17574 INTRON CG17574
3R	22051761	3R_22051761_SNP [dm3] 3R_26226039_SNP [dm6]	T	A	9.776e^-5	0.873	INTERGENIC
3L	3975818	3L_3975818_INS [dm3] 3L_3975818_INS [dm6]	C	CTAC	9.827e^-5	0.873	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11346260	2R_11346260_SNP [dm3] 2R_15458755_SNP [dm6]	T	C	9.849e^-5	0.873	INTRON CG43729
2R	18143231	2R_18143231_SNP [dm3] 2R_22255726_SNP [dm6]	A	C	9.958e^-5	0.873	INTRON dve	TF binding site mE1_TFBS_sens
X	3376569	X_3376569_DEL [dm3] X_3482536_DEL [dm6]	AA	A	9.999e^-5	0.873	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2355403	2L_2355403_SNP [dm3] 2L_2355403_SNP [dm6]	T	A	1.019e^-4	0.873	INTRON CG9967 & 1 other
2L	12237865	2L_12237865_SNP [dm3] 2L_12237865_SNP [dm6]	G	A	1.023e^-4	0.873	INTRON aret
3L	13630284	3L_13630284_SNP [dm3] 3L_13637184_SNP [dm6]	G	T	1.024e^-4	0.873	INTRON bru-3
X	13336193	X_13336193_SNP [dm3] X_13442160_SNP [dm6]	C	T	1.027e^-4	0.873	INTERGENIC
2L	12721017	2L_12721017_INS [dm3] 2L_12721017_INS [dm6]	A	AAA	1.028e^-4	0.873	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	10751786	3L_10751786_SNP [dm3] 3L_10758686_SNP [dm6]	G	A	1.038e^-4	0.873	INTERGENIC
2L	7403550	2L_7403550_SNP [dm3] 2L_7403550_SNP [dm6]	T	G	1.048e^-4	0.873	NON_SYNONYMOUS_CODING CG5171
X	3055663	X_3055663_SNP [dm3] X_3161630_SNP [dm6]	T	A	1.053e^-4	0.873	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	3055785	X_3055785_DEL [dm3] X_3161752_DEL [dm6]	CATCC	C	1.053e^-4	0.873	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11239096	2R_11239096_SNP [dm3] 2R_15351591_SNP [dm6]	C	A	1.054e^-4	0.873	INTRON unc-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23865451	3R_23865451_SNP [dm3] 3R_28039729_SNP [dm6]	A	T	1.056e^-4	0.873	INTRON CG34362
2R	7059515	2R_7059515_SNP [dm3] 2R_11172010_SNP [dm6]	A	T	1.057e^-4	0.873	UTR_5_PRIME CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
3R	18704341	3R_18704341_SNP [dm3] 3R_22878619_SNP [dm6]	T	C	1.057e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6273250	2R_6273250_SNP [dm3] 2R_10385745_SNP [dm6]	A	T	1.062e^-4	0.873	INTRON CG42732
2L	8500959	2L_8500959_SNP [dm3] 2L_8500959_SNP [dm6]	G	A	1.074e^-4	0.873	INTRON Dh31
2R	18169867	2R_18169867_SNP [dm3] 2R_22282362_SNP [dm6]	C	T	1.074e^-4	0.873	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17938483	2R_17938483_SNP [dm3] 2R_22050978_SNP [dm6]	A	G	1.078e^-4	0.873	INTERGENIC
3L	12996685	3L_12996685_SNP [dm3] 3L_13003585_SNP [dm6]	A	G	1.082e^-4	0.873	INTERGENIC
2L	12951804	2L_12951804_SNP [dm3] 2L_12951804_SNP [dm6]	C	T	1.088e^-4	0.873	INTERGENIC
2R	18170655	2R_18170655_DEL [dm3] 2R_22283150_DEL [dm6]	TAAT	T	1.097e^-4	0.873	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1421486	3L_1421486_INS [dm3] 3L_1421486_INS [dm6]	T	TCCGGT	1.099e^-4	0.873	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	11346116	2R_11346116_SNP [dm3] 2R_15458611_SNP [dm6]	T	C	1.100e^-4	0.873	INTRON CG43729
3R	23821706	3R_23821706_INS [dm3] 3R_27995984_INS [dm6]	C	CAC	1.114e^-4	0.873	INTERGENIC
X	3055559	X_3055559_SNP [dm3] X_3161526_SNP [dm6]	C	A	1.115e^-4	0.873	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	13830955	3L_13830955_SNP [dm3] 3L_13837855_SNP [dm6]	T	C	1.121e^-4	0.873	SYNONYMOUS_CODING CG43184	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7022363	2R_7022363_SNP [dm3] 2R_11134858_SNP [dm6]	T	C	1.122e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	13831337	3L_13831337_SNP [dm3] 3L_13838237_SNP [dm6]	G	C	1.123e^-4	0.873	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15432508	2L_15432508_SNP [dm3] 2L_15432508_SNP [dm6]	G	A	1.128e^-4	0.873	UPSTREAM CG4161 INTERGENIC
2R	1811232	2R_1811232_SNP [dm3] 2R_5923727_SNP [dm6]	T	C	1.130e^-4	0.873	INTRON CG43366	transposable element FlyBase
2R	7370902	2R_7370902_SNP [dm3] 2R_11483397_SNP [dm6]	C	T	1.132e^-4	0.873	INTRON inv
3L	13732361	3L_13732361_SNP [dm3] 3L_13739261_SNP [dm6]	G	A	1.134e^-4	0.873	INTRON bru-3
X	6536076	X_6536076_SNP [dm3] X_6642043_SNP [dm6]	C	T	1.137e^-4	0.873	INTRON pigs
3L	16934132	3L_16934132_SNP [dm3] 3L_16941032_SNP [dm6]	C	T	1.139e^-4	0.873	INTRON Cpr73D
2R	14613541	2R_14613541_SNP [dm3] 2R_18726036_SNP [dm6]	T	A	1.142e^-4	0.873	INTRON Hs3st-A
3L	12319963	3L_12319963_SNP [dm3] 3L_12326863_SNP [dm6]	A	C	1.142e^-4	0.873	INTERGENIC
X	3055574	X_3055574_SNP [dm3] X_3161541_SNP [dm6]	C	A	1.143e^-4	0.873	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25395957	3R_25395957_INS [dm3] 3R_29570235_INS [dm6]	G	GGTGTTGCTGTTGTTGCTG...	1.145e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4739680	2L_4739680_DEL [dm3] 2L_4739680_DEL [dm6]	TGCAGCTTGGCCACTCT...	T	1.162e^-4	0.875	INTRON CG15630
X	22111825	X_22111825_SNP [dm3] X_22709989_SNP [dm6]	G	A	1.164e^-4	0.875	INTRON CR44997	transposable element FlyBase
X	12388116	X_12388116_SNP [dm3] X_12494083_SNP [dm6]	G	A	1.168e^-4	0.875	DOWNSTREAM Mks1 INTERGENIC
2L	2349277	2L_2349277_SNP [dm3] 2L_2349277_SNP [dm6]	T	C	1.170e^-4	0.875	INTRON CG9967 & 1 other
2L	12158083	2L_12158083_SNP [dm3] 2L_12158083_SNP [dm6]	T	A	1.175e^-4	0.875	INTRON CG31760
X	14507504	X_14507504_SNP [dm3] X_14613471_SNP [dm6]	C	G	1.192e^-4	0.875	INTRON NetA
2L	8257659	2L_8257659_SNP [dm3] 2L_8257659_SNP [dm6]	T	A	1.196e^-4	0.875	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18111295	2L_18111295_DEL [dm3] 2L_18111295_DEL [dm6]	CCCAAAATTAAAGCGCTAAA...	C	1.198e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10228308	2L_10228308_SNP [dm3] 2L_10228308_SNP [dm6]	C	A	1.211e^-4	0.875	SYNONYMOUS_CODING CG5694
2L	1653515	2L_1653515_SNP [dm3] 2L_1653515_SNP [dm6]	A	G	1.215e^-4	0.875	UTR_5_PRIME chinmo	TF binding site mE1_TFBS_zfh1
3L	5705234	3L_5705234_SNP [dm3] 3L_5712134_SNP [dm6]	C	T	1.227e^-4	0.875	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	8285536	2L_8285536_SNP [dm3] 2L_8285536_SNP [dm6]	C	T	1.228e^-4	0.875	INTRON Btk29A
2R	3530152	2R_3530152_SNP [dm3] 2R_7642647_SNP [dm6]	A	C	1.228e^-4	0.875	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	7962231	2R_7962231_SNP [dm3] 2R_12074726_SNP [dm6]	G	T	1.240e^-4	0.875	INTRON CG8888
3R	14914743	3R_14914743_SNP [dm3] 3R_19089021_SNP [dm6]	G	C	1.256e^-4	0.875	INTRON cdi
X	1339495	X_1339495_SNP [dm3] X_1445462_SNP [dm6]	T	C	1.272e^-4	0.875	SYNONYMOUS_CODING futsch
3L	2961082	3L_2961082_SNP [dm3] 3L_2961082_SNP [dm6]	G	A	1.274e^-4	0.875	UPSTREAM Or63a & 1 other INTERGENIC
2L	13482397	2L_13482397_SNP [dm3] 2L_13482397_SNP [dm6]	A	G	1.277e^-4	0.875	INTRON CG42784
2R	9445741	2R_9445741_SNP [dm3] 2R_13558236_SNP [dm6]	A	T	1.278e^-4	0.875	UPSTREAM CG13334 & 3 others DOWNSTREAM link INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22113965	X_22113965_INS [dm3] X_22712129_INS [dm6]	T	TTTAAAATA	1.282e^-4	0.875	INTRON CR44997	transposable element FlyBase
2L	12720726	2L_12720726_SNP [dm3] 2L_12720726_SNP [dm6]	T	A	1.286e^-4	0.875	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_cad
2R	10002720	2R_10002720_SNP [dm3] 2R_14115215_SNP [dm6]	C	A	1.290e^-4	0.875	INTRON Prosap
2R	6273214	2R_6273214_SNP [dm3] 2R_10385709_SNP [dm6]	T	C	1.294e^-4	0.875	INTRON CG42732
3L	13876806	3L_13876806_SNP [dm3] 3L_13883706_SNP [dm6]	C	A	1.299e^-4	0.875	DOWNSTREAM CG13737 INTRON dysc
X	15421099	X_15421099_SNP [dm3] X_15527066_SNP [dm6]	A	G	1.306e^-4	0.875	INTRON Ac13E
2R	10595599	2R_10595599_SNP [dm3] 2R_14708094_SNP [dm6]	T	A	1.312e^-4	0.875	INTRON mspo
3R	21908502	3R_21908502_SNP [dm3] 3R_26082780_SNP [dm6]	C	T	1.313e^-4	0.875	INTRON dys	TF binding site mE1_TFBS_cad
3R	14198923	3R_14198923_SNP [dm3] 3R_18373201_SNP [dm6]	A	T	1.321e^-4	0.875	NON_SYNONYMOUS_CODING CG14310 UPSTREAM gl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	17219150	2R_17219150_SNP [dm3] 2R_21331645_SNP [dm6]	G	A	1.321e^-4	0.875	DOWNSTREAM snoRNA:Psi18S-841c & 2 others INTRON dom EXON snoRNA:Me28S-A2589c
2R	10596396	2R_10596396_SNP [dm3] 2R_14708891_SNP [dm6]	T	A	1.327e^-4	0.875	INTRON mspo
3R	23865440	3R_23865440_SNP [dm3] 3R_28039718_SNP [dm6]	T	C	1.340e^-4	0.875	INTRON CG34362
2L	12914764	2L_12914764_SNP [dm3] 2L_12914764_SNP [dm6]	C	T	1.343e^-4	0.875	SYNONYMOUS_CODING ACXC UTR_3_PRIME ACXC
2L	775603	2L_775603_SNP [dm3] 2L_775603_SNP [dm6]	G	T	1.351e^-4	0.875	UPSTREAM CG13946 INTERGENIC
3R	23865446	3R_23865446_SNP [dm3] 3R_28039724_SNP [dm6]	C	T	1.352e^-4	0.875	INTRON CG34362
2R	10229160	2R_10229160_SNP [dm3] 2R_14341655_SNP [dm6]	C	T	1.352e^-4	0.875	UPSTREAM Shroom INTRON Shroom	TF binding site BDTNP1_TFBS_dl
2L	13347535	2L_13347535_SNP [dm3] 2L_13347535_SNP [dm6]	A	T	1.354e^-4	0.875	UPSTREAM CG16826 INTERGENIC
3R	14981909	3R_14981909_SNP [dm3] 3R_19156187_SNP [dm6]	T	C	1.355e^-4	0.875	SYNONYMOUS_CODING CG11779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	22111772	X_22111772_SNP [dm3] X_22709936_SNP [dm6]	A	G	1.356e^-4	0.875	INTRON CR44997	transposable element FlyBase
X	19909529	X_19909529_SNP [dm3] X_20015496_SNP [dm6]	T	G	1.364e^-4	0.875	INTRON Dop2R
X	17905364	X_17905364_SNP [dm3] X_18011331_SNP [dm6]	T	C	1.368e^-4	0.875	INTRON Sh
2L	13256319	2L_13256319_SNP [dm3] 2L_13256319_SNP [dm6]	C	A	1.370e^-4	0.875	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7883686	2R_7883686_SNP [dm3] 2R_11996181_SNP [dm6]	T	C	1.373e^-4	0.875	UPSTREAM CR45319 EXON CR45318
3L	9326369	3L_9326369_INS [dm3] 3L_9333269_INS [dm6]	T	TTCAAGAAAAACAAT...	1.376e^-4	0.875	INTERGENIC
3L	9554930	3L_9554930_SNP [dm3] 3L_9561830_SNP [dm6]	T	G	1.380e^-4	0.875	INTRON CG42673
2L	7336836	2L_7336836_SNP [dm3] 2L_7336836_SNP [dm6]	G	C	1.381e^-4	0.875	INTRON Wnt6
X	1341924	X_1341924_SNP [dm3] X_1447891_SNP [dm6]	A	G	1.383e^-4	0.875	SYNONYMOUS_CODING futsch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1877075	2R_1877075_SNP [dm3] 2R_5989570_SNP [dm6]	A	T	1.384e^-4	0.875	INTRON Src42A	transposable element FlyBase
2R	10595600	2R_10595600_SNP [dm3] 2R_14708095_SNP [dm6]	T	A	1.390e^-4	0.875	INTRON mspo
X	13664466	X_13664466_SNP [dm3] X_13770433_SNP [dm6]	A	T	1.394e^-4	0.875	INTRON rdgB	TF binding site BDTNP1_TFBS_dl
2R	17227141	2R_17227141_SNP [dm3] 2R_21339636_SNP [dm6]	C	A	1.399e^-4	0.875	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	6273198	2R_6273198_SNP [dm3] 2R_10385693_SNP [dm6]	G	A	1.400e^-4	0.875	INTRON CG42732
2R	1762205	2R_1762205_SNP [dm3] 2R_5874700_SNP [dm6]	G	C	1.403e^-4	0.875	INTERGENIC
2R	6273208	2R_6273208_SNP [dm3] 2R_10385703_SNP [dm6]	T	A	1.408e^-4	0.875	INTRON CG42732
2R	20471626	2R_20471626_SNP [dm3] 2R_24584103_SNP [dm6]	C	T	1.413e^-4	0.875	INTRON pio
3R	12463916	3R_12463916_SNP [dm3] 3R_16638194_SNP [dm6]	A	T	1.413e^-4	0.875	UTR_3_PRIME Fas1 DOWNSTREAM Fas1 INTRON Fas1	TF binding site mE1_TFBS_HSA
2L	12866788	2L_12866788_SNP [dm3] 2L_12866788_SNP [dm6]	A	T	1.421e^-4	0.875	INTERGENIC
2R	13466869	2R_13466869_SNP [dm3] 2R_17579364_SNP [dm6]	T	A	1.421e^-4	0.875	INTRON Dcr-2	TF binding site BDTNP1_TFBS_prd
3R	23420807	3R_23420807_SNP [dm3] 3R_27595085_SNP [dm6]	C	A	1.430e^-4	0.875	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	8257725	2L_8257725_SNP [dm3] 2L_8257725_SNP [dm6]	A	G	1.433e^-4	0.875	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9403532	3L_9403532_SNP [dm3] 3L_9410432_SNP [dm6]	G	A	1.434e^-4	0.875	UPSTREAM CG3689 INTRON CG4022	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11294817	2R_11294817_SNP [dm3] 2R_15407312_SNP [dm6]	A	C	1.445e^-4	0.875	INTRON CG43729
2L	13347513	2L_13347513_SNP [dm3] 2L_13347513_SNP [dm6]	C	G	1.445e^-4	0.875	UPSTREAM CG16826 INTERGENIC
3R	23865316	3R_23865316_SNP [dm3] 3R_28039594_SNP [dm6]	A	T	1.446e^-4	0.875	INTRON CG34362
2L	11142663	2L_11142663_SNP [dm3] 2L_11142663_SNP [dm6]	G	A	1.448e^-4	0.875	INTRON Gyc32E
X	1341184	X_1341184_SNP [dm3] X_1447151_SNP [dm6]	C	T	1.450e^-4	0.875	SYNONYMOUS_CODING futsch	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5616470	2L_5616470_SNP [dm3] 2L_5616470_SNP [dm6]	C	T	1.460e^-4	0.876	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18664977	3R_18664977_SNP [dm3] 3R_22839255_SNP [dm6]	T	C	1.462e^-4	0.876	INTERGENIC
2R	1828370	2R_1828370_SNP [dm3] 2R_5940865_SNP [dm6]	T	C	1.471e^-4	0.877	INTERGENIC
3L	13732352	3L_13732352_SNP [dm3] 3L_13739252_SNP [dm6]	C	T	1.474e^-4	0.877	INTRON bru-3
2L	3321310	2L_3321310_DEL [dm3] 2L_3321310_DEL [dm6]	ATTGCCCCATTAA...	A	1.482e^-4	0.877	INTRON CG8837	TF binding site mE1_TFBS_chinmo
2R	13903821	2R_13903821_SNP [dm3] 2R_18016316_SNP [dm6]	T	C	1.483e^-4	0.877	INTERGENIC
3R	6346484	3R_6346484_DEL [dm3] 3R_10520762_DEL [dm6]	GG	G	1.493e^-4	0.881	INTRON hth
2R	4073877	2R_4073877_SNP [dm3] 2R_8186372_SNP [dm6]	C	T	1.510e^-4	0.886	INTRON LRP1
2R	5292617	2R_5292617_SNP [dm3] 2R_9405112_SNP [dm6]	A	C	1.519e^-4	0.886	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10369283	2L_10369283_SNP [dm3] 2L_10369283_SNP [dm6]	G	T	1.521e^-4	0.886	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad
3L	9973148	3L_9973148_SNP [dm3] 3L_9980048_SNP [dm6]	C	T	1.525e^-4	0.886	INTRON dpr6
3L	13768360	3L_13768360_SNP [dm3] 3L_13775260_SNP [dm6]	A	G	1.525e^-4	0.886	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	19025083	2R_19025083_DEL [dm3] 2R_23137560_DEL [dm6]	TTTTATCT	T	1.531e^-4	0.886	INTERGENIC
3L	8878267	3L_8878267_SNP [dm3] 3L_8885167_SNP [dm6]	A	T	1.547e^-4	0.89	INTRON dally
3L	11703471	3L_11703471_SNP [dm3] 3L_11710371_SNP [dm6]	C	T	1.557e^-4	0.89	SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26974453	3R_26974453_SNP [dm3] 3R_31148731_SNP [dm6]	T	C	1.560e^-4	0.89	INTRON Gycbeta100B
3L	13873814	3L_13873814_SNP [dm3] 3L_13880714_SNP [dm6]	C	T	1.563e^-4	0.89	INTRON dysc & 1 other
3R	14914740	3R_14914740_SNP [dm3] 3R_19089018_SNP [dm6]	T	C	1.567e^-4	0.89	INTRON cdi
2R	11349798	2R_11349798_SNP [dm3] 2R_15462293_SNP [dm6]	C	A	1.574e^-4	0.89	INTRON CG43729
2L	16406669	2L_16406669_SNP [dm3] 2L_16406669_SNP [dm6]	C	A	1.578e^-4	0.89	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8001655	2R_8001655_SNP [dm3] 2R_12114150_SNP [dm6]	G	C	1.582e^-4	0.89	INTRON jeb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13842217	3L_13842217_SNP [dm3] 3L_13849117_SNP [dm6]	A	G	1.599e^-4	0.89	SYNONYMOUS_CODING Hml
3R	16993076	3R_16993076_SNP [dm3] 3R_21167354_SNP [dm6]	T	G	1.603e^-4	0.89	INTRON SNF4Agamma & 1 other
2R	1876885	2R_1876885_SNP [dm3] 2R_5989380_SNP [dm6]	T	C	1.606e^-4	0.89	INTRON Src42A
2L	7494485	2L_7494485_SNP [dm3] 2L_7494485_SNP [dm6]	G	T	1.611e^-4	0.89	INTRON Ziz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4503316	2R_4503316_SNP [dm3] 2R_8615811_SNP [dm6]	C	T	1.613e^-4	0.89	UPSTREAM Cirl INTRON Cirl	TF binding site mE1_TFBS_cad
2R	19259554	2R_19259554_SNP [dm3] 2R_23372031_SNP [dm6]	A	G	1.614e^-4	0.89	SYNONYMOUS_CODING Golgin245 DOWNSTREAM Ice1
2R	7882310	2R_7882310_SNP [dm3] 2R_11994805_SNP [dm6]	A	G	1.622e^-4	0.89	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
2L	11223220	2L_11223220_SNP [dm3] 2L_11223220_SNP [dm6]	C	G	1.624e^-4	0.89	INTRON ab
2R	1739564	2R_1739564_SNP [dm3] 2R_5852059_SNP [dm6]	A	G	1.637e^-4	0.89	INTRON dpr12
2L	5616484	2L_5616484_SNP [dm3] 2L_5616484_SNP [dm6]	G	T	1.644e^-4	0.89	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6099405	2L_6099405_SNP [dm3] 2L_6099405_SNP [dm6]	T	A	1.648e^-4	0.89	UPSTREAM CG9175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3531894	2R_3531894_SNP [dm3] 2R_7644389_SNP [dm6]	G	T	1.665e^-4	0.89	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	15082537	2R_15082537_DEL [dm3] 2R_19195032_DEL [dm6]	TT	T	1.675e^-4	0.89	INTRON hppy
2R	14410108	2R_14410108_SNP [dm3] 2R_18522603_SNP [dm6]	C	T	1.679e^-4	0.89	SYNONYMOUS_CODING CG43066	TF binding site mE1_TFBS_chinmo
3L	7992683	3L_7992683_SNP [dm3] 3L_7999583_SNP [dm6]	G	A	1.703e^-4	0.89	INTRON nmo
2R	10001585	2R_10001585_SNP [dm3] 2R_14114080_SNP [dm6]	C	G	1.710e^-4	0.89	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	14981621	3R_14981621_SNP [dm3] 3R_19155899_SNP [dm6]	A	G	1.711e^-4	0.89	SYNONYMOUS_CODING CG11779	TF binding site mE1_TFBS_sens
2R	7996131	2R_7996131_DEL [dm3] 2R_12108626_DEL [dm6]	GGAGATG	G	1.720e^-4	0.89	INTRON jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	22103891	X_22103891_SNP [dm3] X_22702055_SNP [dm6]	T	C	1.727e^-4	0.89	INTRON CR44997	transposable element FlyBase
2L	14544833	2L_14544833_SNP [dm3] 2L_14544833_SNP [dm6]	T	C	1.735e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8257726	2L_8257726_SNP [dm3] 2L_8257726_SNP [dm6]	G	C	1.738e^-4	0.89	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14135502	3L_14135502_SNP [dm3] 3L_14142402_SNP [dm6]	G	T	1.742e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs
2R	17768957	2R_17768957_SNP [dm3] 2R_21881452_SNP [dm6]	G	A	1.757e^-4	0.89	UTR_3_PRIME PpN58A INTRON Fili
3R	16754035	3R_16754035_SNP [dm3] 3R_20928313_SNP [dm6]	A	T	1.760e^-4	0.89	UTR_3_PRIME hdly DOWNSTREAM hdly INTRON CG31191 & 1 other
X	13664465	X_13664465_SNP [dm3] X_13770432_SNP [dm6]	A	T	1.763e^-4	0.89	INTRON rdgB	TF binding site BDTNP1_TFBS_dl
3R	23865519	3R_23865519_SNP [dm3] 3R_28039797_SNP [dm6]	T	C	1.764e^-4	0.89	INTRON CG34362
2R	19025081	2R_19025081_SNP [dm3] 2R_23137558_SNP [dm6]	C	T	1.765e^-4	0.89	INTERGENIC
2L	5667991	2L_5667991_SNP [dm3] 2L_5667991_SNP [dm6]	G	T	1.768e^-4	0.89	INTRON Hsp60C
3L	15752839	3L_15752839_SNP [dm3] 3L_15759739_SNP [dm6]	C	T	1.782e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	5580433	2L_5580433_SNP [dm3] 2L_5580433_SNP [dm6]	G	C	1.795e^-4	0.89	SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9977712	2R_9977712_SNP [dm3] 2R_14090207_SNP [dm6]	A	C	1.808e^-4	0.89	UPSTREAM CG42287 & 1 other INTRON Prosap
3R	15312346	3R_15312346_SNP [dm3] 3R_19486624_SNP [dm6]	T	A	1.809e^-4	0.89	UPSTREAM Dys INTRON Dys
2R	1811222	2R_1811222_SNP [dm3] 2R_5923717_SNP [dm6]	A	T	1.816e^-4	0.89	INTRON CG43366	transposable element FlyBase
X	18313902	X_18313902_DEL [dm3] X_18419869_DEL [dm6]	CAGTTAT	C	1.818e^-4	0.89	INTERGENIC
3R	24568426	3R_24568426_SNP [dm3] 3R_28742704_SNP [dm6]	C	A	1.821e^-4	0.89	INTRON AstA-R2
2L	14445313	2L_14445313_SNP [dm3] 2L_14445313_SNP [dm6]	G	T	1.822e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	2471580	X_2471580_DEL [dm3] X_2577547_DEL [dm6]	TCTCGTT	T	1.831e^-4	0.89	DOWNSTREAM Pdfr INTRON Pdfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12463949	3R_12463949_SNP [dm3] 3R_16638227_SNP [dm6]	C	A	1.836e^-4	0.89	UTR_3_PRIME Fas1 DOWNSTREAM Fas1 INTRON Fas1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5361570	X_5361570_SNP [dm3] X_5467537_SNP [dm6]	C	T	1.840e^-4	0.89	INTRON SPR
3L	8810217	3L_8810217_SNP [dm3] 3L_8817117_SNP [dm6]	C	A	1.845e^-4	0.89	INTERGENIC
3R	24633664	3R_24633664_SNP [dm3] 3R_28807942_SNP [dm6]	G	A	1.856e^-4	0.89	DOWNSTREAM wdn & 1 other INTERGENIC
3R	20493467	3R_20493467_SNP [dm3] 3R_24667745_SNP [dm6]	G	C	1.878e^-4	0.89	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
X	8427384	X_8427384_SNP [dm3] X_8533351_SNP [dm6]	G	A	1.888e^-4	0.89	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16036773	3R_16036773_SNP [dm3] 3R_20211051_SNP [dm6]	G	A	1.892e^-4	0.89	INTRON Nlg4
3L	13734288	3L_13734288_SNP [dm3] 3L_13741188_SNP [dm6]	A	G	1.892e^-4	0.89	INTRON bru-3
2L	11297376	2L_11297376_SNP [dm3] 2L_11297376_SNP [dm6]	A	C	1.895e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8810218	3L_8810218_SNP [dm3] 3L_8817118_SNP [dm6]	A	G	1.904e^-4	0.89	INTERGENIC
2R	3702921	2R_3702921_SNP [dm3] 2R_7815416_SNP [dm6]	G	C	1.924e^-4	0.89	UTR_3_PRIME CG1882 DOWNSTREAM CG1882
X	15157614	X_15157614_SNP [dm3] X_15263581_SNP [dm6]	A	T	1.928e^-4	0.89	INTERGENIC
2L	6027727	2L_6027727_SNP [dm3] 2L_6027727_SNP [dm6]	T	C	1.937e^-4	0.89	INTRON CG9109
3L	6942101	3L_6942101_SNP [dm3] 3L_6949001_SNP [dm6]	C	G	1.937e^-4	0.89	UTR_3_PRIME tow DOWNSTREAM CG10077 & 1 other
3R	24634506	3R_24634506_SNP [dm3] 3R_28808784_SNP [dm6]	A	G	1.950e^-4	0.89	INTRON wdn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2158618	X_2158618_SNP [dm3] X_2264585_SNP [dm6]	A	G	1.956e^-4	0.89	UTR_3_PRIME CG3071 DOWNSTREAM CG2924
2L	10494079	2L_10494079_SNP [dm3] 2L_10494079_SNP [dm6]	A	G	1.967e^-4	0.89	SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14398330	2R_14398330_SNP [dm3] 2R_18510825_SNP [dm6]	G	C	1.968e^-4	0.89	INTERGENIC
2R	8743162	2R_8743162_SNP [dm3] 2R_12855657_SNP [dm6]	T	A	1.969e^-4	0.89	UPSTREAM CG17574 INTRON CG17574
3L	14331237	3L_14331237_SNP [dm3] 3L_14338137_SNP [dm6]	A	T	1.978e^-4	0.89	INTRON fz	TF binding site BDTNP1_TFBS_dl
3R	18667463	3R_18667463_SNP [dm3] 3R_22841741_SNP [dm6]	A	G	1.990e^-4	0.89	INTERGENIC
2R	12015965	2R_12015965_DEL [dm3] 2R_16128460_DEL [dm6]	ACA	A	2.010e^-4	0.89	INTRON spin
3R	20322432	3R_20322432_SNP [dm3] 3R_24496710_SNP [dm6]	G	A	2.012e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15082542	2R_15082542_SNP [dm3] 2R_19195037_SNP [dm6]	A	G	2.012e^-4	0.89	INTRON hppy
3L	9209730	3L_9209730_SNP [dm3] 3L_9216630_SNP [dm6]	T	C	2.015e^-4	0.89	INTERGENIC
2L	12720999	2L_12720999_SNP [dm3] 2L_12720999_SNP [dm6]	A	G	2.022e^-4	0.89	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	7379960	X_7379960_SNP [dm3] X_7485927_SNP [dm6]	G	C	2.027e^-4	0.89	INTERGENIC
2L	12975280	2L_12975280_SNP [dm3] 2L_12975280_SNP [dm6]	C	T	2.028e^-4	0.89	UPSTREAM Vha68-2 INTRON Vha68-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11238328	2R_11238328_SNP [dm3] 2R_15350823_SNP [dm6]	A	G	2.042e^-4	0.89	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	507474	2L_507474_SNP [dm3] 2L_507474_SNP [dm6]	G	A	2.045e^-4	0.89	INTRON ush
3L	14855958	3L_14855958_SNP [dm3] 3L_14862858_SNP [dm6]	A	T	2.053e^-4	0.89	INTRON CG17839	TF binding site mE1_TFBS_inv
X	19108852	X_19108852_SNP [dm3] X_19214819_SNP [dm6]	G	A	2.053e^-4	0.89	UTR_3_PRIME Mur18B UPSTREAM Muc18B	TF binding site mE1_TFBS_chinmo
2L	1962577	2L_1962577_SNP [dm3] 2L_1962577_SNP [dm6]	T	A	2.067e^-4	0.89	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5100916	2L_5100916_SNP [dm3] 2L_5100916_SNP [dm6]	T	C	2.068e^-4	0.89	UTR_5_PRIME Msp300 UPSTREAM CG8680
3R	26001618	3R_26001618_SNP [dm3] 3R_30175896_SNP [dm6]	C	T	2.071e^-4	0.89	UTR_3_PRIME CG1983 DOWNSTREAM CG1983	regulatory region REDfly_CRMs
2L	5616472	2L_5616472_SNP [dm3] 2L_5616472_SNP [dm6]	G	A	2.081e^-4	0.89	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17323871	X_17323871_SNP [dm3] X_17429838_SNP [dm6]	C	G	2.083e^-4	0.89	INTRON CG12994
2R	14815466	2R_14815466_SNP [dm3] 2R_18927961_SNP [dm6]	A	G	2.089e^-4	0.89	INTRON sano
3L	16501562	3L_16501562_SNP [dm3] 3L_16508462_SNP [dm6]	C	T	2.093e^-4	0.89	SPLICE_SITE_REGION CG43373 INTRON CG43373
2L	11007911	2L_11007911_SNP [dm3] 2L_11007911_SNP [dm6]	A	G	2.100e^-4	0.89	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6584831	2L_6584831_SNP [dm3] 2L_6584831_SNP [dm6]	C	A	2.110e^-4	0.89	INTRON CG11319
3R	25304083	3R_25304083_SNP [dm3] 3R_29478361_SNP [dm6]	G	A	2.113e^-4	0.89	UPSTREAM Ptp99A INTRON Ptp99A
3R	25339800	3R_25339800_SNP [dm3] 3R_29514078_SNP [dm6]	A	T	2.114e^-4	0.89	INTERGENIC
2L	934194	2L_934194_SNP [dm3] 2L_934194_SNP [dm6]	A	C	2.134e^-4	0.89	INTRON CG4341
2R	3531878	2R_3531878_SNP [dm3] 2R_7644373_SNP [dm6]	G	T	2.140e^-4	0.89	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	9209734	3L_9209734_SNP [dm3] 3L_9216634_SNP [dm6]	T	A	2.146e^-4	0.89	INTERGENIC
3L	9209735	3L_9209735_SNP [dm3] 3L_9216635_SNP [dm6]	T	C	2.146e^-4	0.89	INTERGENIC
3R	23404098	3R_23404098_SNP [dm3] 3R_27578376_SNP [dm6]	C	A	2.148e^-4	0.89	INTRON wdb	TF binding site mE1_TFBS_sens
3L	16565265	3L_16565265_SNP [dm3] 3L_16572165_SNP [dm6]	C	G	2.148e^-4	0.89	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	15701007	3L_15701007_SNP [dm3] 3L_15707907_SNP [dm6]	G	A	2.154e^-4	0.89	INTERGENIC
3L	13737010	3L_13737010_SNP [dm3] 3L_13743910_SNP [dm6]	G	T	2.154e^-4	0.89	INTRON bru-3
3R	23767035	3R_23767035_SNP [dm3] 3R_27941313_SNP [dm6]	T	C	2.154e^-4	0.89	SYNONYMOUS_CODING CG5514
2L	8500829	2L_8500829_SNP [dm3] 2L_8500829_SNP [dm6]	T	A	2.163e^-4	0.89	INTRON Dh31
3R	24633460	3R_24633460_DEL [dm3] 3R_28807738_DEL [dm6]	TGAGTAGGTATT...	T	2.168e^-4	0.89	DOWNSTREAM wdn & 1 other INTERGENIC
3L	13193971	3L_13193971_SNP [dm3] 3L_13200871_SNP [dm6]	T	C	2.171e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12412106	2L_12412106_SNP [dm3] 2L_12412106_SNP [dm6]	A	G	2.172e^-4	0.89	INTRON vir-1
2R	10596481	2R_10596481_SNP [dm3] 2R_14708976_SNP [dm6]	G	A	2.179e^-4	0.89	INTRON mspo
3R	15054799	3R_15054799_SNP [dm3] 3R_19229077_SNP [dm6]	G	A	2.187e^-4	0.89	SYNONYMOUS_CODING CG5250 UPSTREAM CG11703 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14383336	3R_14383336_SNP [dm3] 3R_18557614_SNP [dm6]	A	C	2.188e^-4	0.89	INTERGENIC
2R	14964652	2R_14964652_SNP [dm3] 2R_19077147_SNP [dm6]	G	A	2.201e^-4	0.89	INTRON 5-HT1A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7953649	2R_7953649_SNP [dm3] 2R_12066144_SNP [dm6]	G	A	2.203e^-4	0.89	SYNONYMOUS_CODING CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7336772	2L_7336772_SNP [dm3] 2L_7336772_SNP [dm6]	A	G	2.211e^-4	0.89	INTRON Wnt6
3R	18664693	3R_18664693_SNP [dm3] 3R_22838971_SNP [dm6]	A	G	2.215e^-4	0.89	INTERGENIC
2L	1518867	2L_1518867_SNP [dm3] 2L_1518867_SNP [dm6]	C	A	2.215e^-4	0.89	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3505316	2L_3505316_SNP [dm3] 2L_3505316_SNP [dm6]	T	A	2.215e^-4	0.89	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16389782	2L_16389782_SNP [dm3] 2L_16389782_SNP [dm6]	G	A	2.223e^-4	0.89	INTERGENIC
3R	26985633	3R_26985633_SNP [dm3] 3R_31159911_SNP [dm6]	C	A	2.224e^-4	0.89	INTRON Gycbeta100B & 1 other
2L	12412104	2L_12412104_SNP [dm3] 2L_12412104_SNP [dm6]	T	A	2.224e^-4	0.89	INTRON vir-1
3L	10101347	3L_10101347_SNP [dm3] 3L_10108247_SNP [dm6]	G	A	2.230e^-4	0.89	INTRON dpr6
2L	13347482	2L_13347482_SNP [dm3] 2L_13347482_SNP [dm6]	A	T	2.239e^-4	0.89	UPSTREAM CG16826 INTERGENIC
3R	24643338	3R_24643338_SNP [dm3] 3R_28817616_SNP [dm6]	T	C	2.240e^-4	0.89	SYNONYMOUS_CODING CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18153554	2R_18153554_SNP [dm3] 2R_22266049_SNP [dm6]	T	C	2.243e^-4	0.89	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13831173	3L_13831173_SNP [dm3] 3L_13838073_SNP [dm6]	G	T	2.254e^-4	0.89	UTR_3_PRIME CG43184	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12412108	2L_12412108_SNP [dm3] 2L_12412108_SNP [dm6]	T	C	2.256e^-4	0.89	INTRON vir-1
2R	2427196	2R_2427196_SNP [dm3] 2R_6539691_SNP [dm6]	T	G	2.256e^-4	0.89	INTRON jing
2L	13304396	2L_13304396_SNP [dm3] 2L_13304396_SNP [dm6]	T	G	2.261e^-4	0.89	UTR_3_PRIME CG43778 UPSTREAM CG16825
3R	17716707	3R_17716707_DEL [dm3] 3R_21890985_DEL [dm6]	CAG	C	2.262e^-4	0.89	DOWNSTREAM CR43844 INTRON CG6678
2L	12882467	2L_12882467_SNP [dm3] 2L_12882467_SNP [dm6]	A	C	2.263e^-4	0.89	INTERGENIC
2R	4137215	2R_4137215_SNP [dm3] 2R_8249710_SNP [dm6]	A	C	2.263e^-4	0.89	UPSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	12955537	2L_12955537_SNP [dm3] 2L_12955537_SNP [dm6]	C	T	2.264e^-4	0.89	INTERGENIC
X	5896574	X_5896574_SNP [dm3] X_6002541_SNP [dm6]	C	T	2.267e^-4	0.89	INTRON CR44498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13734451	3L_13734451_SNP [dm3] 3L_13741351_SNP [dm6]	G	A	2.288e^-4	0.89	INTRON bru-3
X	13061090	X_13061090_SNP [dm3] X_13167057_SNP [dm6]	T	C	2.293e^-4	0.89	INTRON CG34411
2L	1962671	2L_1962671_SNP [dm3] 2L_1962671_SNP [dm6]	G	A	2.295e^-4	0.89	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24568450	3R_24568450_SNP [dm3] 3R_28742728_SNP [dm6]	T	G	2.296e^-4	0.89	INTRON AstA-R2
X	1328825	X_1328825_SNP [dm3] X_1434792_SNP [dm6]	A	G	2.299e^-4	0.89	NON_SYNONYMOUS_CODING futsch	TF binding site mE1_TFBS_chinmo
2R	6706045	2R_6706045_SNP [dm3] 2R_10818540_SNP [dm6]	A	C	2.300e^-4	0.89	INTRON dgo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	2.302e^-4	0.89	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6434163	2R_6434163_SNP [dm3] 2R_10546658_SNP [dm6]	A	C	2.306e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18170086	2R_18170086_SNP [dm3] 2R_22282581_SNP [dm6]	G	A	2.313e^-4	0.89	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	1821657	2R_1821657_SNP [dm3] 2R_5934152_SNP [dm6]	C	T	2.319e^-4	0.89	INTERGENIC
X	3054393	X_3054393_SNP [dm3] X_3160360_SNP [dm6]	T	C	2.334e^-4	0.89	INTRON N	TF binding site BDTNP1_TFBS_dl
2L	2668574	2L_2668574_SNP [dm3] 2L_2668574_SNP [dm6]	T	G	2.352e^-4	0.89	INTERGENIC
3L	13859032	3L_13859032_SNP [dm3] 3L_13865932_SNP [dm6]	T	C	2.362e^-4	0.89	INTRON CG8745
2L	3323019	2L_3323019_SNP [dm3] 2L_3323019_SNP [dm6]	C	T	2.369e^-4	0.89	SYNONYMOUS_CODING CG8837	TF binding site mE1_TFBS_cad
X	13664451	X_13664451_SNP [dm3] X_13770418_SNP [dm6]	G	A	2.373e^-4	0.89	INTRON rdgB	TF binding site BDTNP1_TFBS_dl
2R	5266429	2R_5266429_SNP [dm3] 2R_9378924_SNP [dm6]	T	C	2.374e^-4	0.89	INTRON CG13954
X	12347669	X_12347669_SNP [dm3] X_12453636_SNP [dm6]	G	A	2.379e^-4	0.89	UTR_3_PRIME Pkcdelta
3L	13052088	3L_13052088_DEL [dm3] 3L_13058988_DEL [dm6]	ACAAA	A	2.381e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13734545	3L_13734545_DEL [dm3] 3L_13741445_DEL [dm6]	ATTT	A	2.396e^-4	0.89	INTRON bru-3
2R	18292805	2R_18292805_SNP [dm3] 2R_22405300_SNP [dm6]	T	G	2.396e^-4	0.89	INTRON CG6044
3R	12344119	3R_12344119_SNP [dm3] 3R_16518397_SNP [dm6]	C	A	2.404e^-4	0.89	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13681232	2L_13681232_SNP [dm3] 2L_13681232_SNP [dm6]	A	G	2.409e^-4	0.89	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2R	8703431	2R_8703431_SNP [dm3] 2R_12815926_SNP [dm6]	A	G	2.419e^-4	0.89	INTERGENIC
3R	17016798	3R_17016798_SNP [dm3] 3R_21191076_SNP [dm6]	G	T	2.433e^-4	0.89	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5787934	2L_5787934_SNP [dm3] 2L_5787934_SNP [dm6]	A	G	2.433e^-4	0.89	INTRON CG9171
3L	8145297	3L_8145297_SNP [dm3] 3L_8152197_SNP [dm6]	A	T	2.444e^-4	0.89	UPSTREAM CG13676 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4548301	X_4548301_DEL [dm3] X_4654268_DEL [dm6]	AA	A	2.447e^-4	0.89	INTRON Cbp80 & 1 other
X	13061094	X_13061094_SNP [dm3] X_13167061_SNP [dm6]	A	T	2.465e^-4	0.89	INTRON CG34411
X	22245097	X_22245097_SNP [dm3] X_22843261_SNP [dm6]	T	C	2.466e^-4	0.89	INTRON fog & 1 other	transposable element FlyBase
2R	11545286	2R_11545286_SNP [dm3] 2R_15657781_SNP [dm6]	A	T	2.466e^-4	0.89	UTR_3_PRIME fus DOWNSTREAM mir-278 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	2726787	2L_2726787_SNP [dm3] 2L_2726787_SNP [dm6]	A	G	2.468e^-4	0.89	INTRON CG31689
3R	20493471	3R_20493471_SNP [dm3] 3R_24667749_SNP [dm6]	C	A	2.470e^-4	0.89	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
X	9644145	X_9644145_SNP [dm3] X_9750112_SNP [dm6]	A	T	2.472e^-4	0.89	INTRON Sp1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15420857	X_15420857_SNP [dm3] X_15526824_SNP [dm6]	A	G	2.480e^-4	0.89	INTRON Ac13E
X	15420874	X_15420874_SNP [dm3] X_15526841_SNP [dm6]	A	G	2.480e^-4	0.89	INTRON Ac13E
2L	10498056	2L_10498056_SNP [dm3] 2L_10498056_SNP [dm6]	T	C	2.484e^-4	0.89	SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8731592	2R_8731592_INS [dm3] 2R_12844087_INS [dm6]	A	AC	2.490e^-4	0.89	INTRON Or49b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20189325	2R_20189325_SNP [dm3] 2R_24301802_SNP [dm6]	C	T	2.492e^-4	0.89	INTERGENIC
3R	6008855	3R_6008855_MNP [dm3] 3R_10183133_MNP [dm6]	CTACA	TGTAG	2.497e^-4	0.89	INTRON CG12814
2R	18170163	2R_18170163_SNP [dm3] 2R_22282658_SNP [dm6]	T	G	2.501e^-4	0.89	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23416438	3R_23416438_SNP [dm3] 3R_27590716_SNP [dm6]	T	C	2.512e^-4	0.89	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17356642	X_17356642_SNP [dm3] X_17462609_SNP [dm6]	G	A	2.516e^-4	0.89	INTRON CG43658
3R	22754135	3R_22754135_SNP [dm3] 3R_26928413_SNP [dm6]	G	A	2.519e^-4	0.89	INTRON sda
2R	7960569	2R_7960569_SNP [dm3] 2R_12073064_SNP [dm6]	C	G	2.521e^-4	0.89	INTRON CG8888
X	14507977	X_14507977_SNP [dm3] X_14613944_SNP [dm6]	G	A	2.522e^-4	0.89	INTRON NetA
2R	19025098	2R_19025098_SNP [dm3] 2R_23137575_SNP [dm6]	T	A	2.523e^-4	0.89	INTERGENIC
2R	6954510	2R_6954510_SNP [dm3] 2R_11067005_SNP [dm6]	G	T	2.528e^-4	0.89	INTRON luna
3L	9751546	3L_9751546_SNP [dm3] 3L_9758446_SNP [dm6]	G	T	2.529e^-4	0.89	INTRON CG42268
2L	8884732	2L_8884732_SNP [dm3] 2L_8884732_SNP [dm6]	C	A	2.537e^-4	0.89	INTERGENIC
3L	10751518	3L_10751518_SNP [dm3] 3L_10758418_SNP [dm6]	G	T	2.539e^-4	0.89	INTERGENIC
3R	27459523	3R_27459523_SNP [dm3] 3R_31633801_SNP [dm6]	A	T	2.540e^-4	0.89	INTRON kek6
3L	8078491	3L_8078491_SNP [dm3] 3L_8085391_SNP [dm6]	T	C	2.542e^-4	0.89	INTRON Ect4
X	6536078	X_6536078_SNP [dm3] X_6642045_SNP [dm6]	C	G	2.547e^-4	0.89	INTRON pigs
2R	11320287	2R_11320287_SNP [dm3] 2R_15432782_SNP [dm6]	A	G	2.550e^-4	0.89	INTRON CG43729
3R	17227504	3R_17227504_SNP [dm3] 3R_21401782_SNP [dm6]	A	G	2.559e^-4	0.89	UTR_5_PRIME CG43311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	14913633	X_14913633_SNP [dm3] X_15019600_SNP [dm6]	A	C	2.559e^-4	0.89	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	843164	3L_843164_SNP [dm3] 3L_843164_SNP [dm6]	C	T	2.569e^-4	0.89	SYNONYMOUS_CODING Gr61a UTR_3_PRIME Gr61a UPSTREAM CG13889
3L	12273922	3L_12273922_SNP [dm3] 3L_12280822_SNP [dm6]	T	G	2.570e^-4	0.89	SYNONYMOUS_CODING CG10426	TF binding site mE1_TFBS_sens
2R	9445966	2R_9445966_SNP [dm3] 2R_13558461_SNP [dm6]	C	T	2.574e^-4	0.89	UPSTREAM CG13334 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13879570	2R_13879570_SNP [dm3] 2R_17992065_SNP [dm6]	T	C	2.579e^-4	0.89	INTRON dpr13	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23488692	3R_23488692_SNP [dm3] 3R_27662970_SNP [dm6]	C	A	2.597e^-4	0.89	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7883662	2R_7883662_SNP [dm3] 2R_11996157_SNP [dm6]	G	A	2.600e^-4	0.89	UPSTREAM CR45319 EXON CR45318
2R	7882258	2R_7882258_SNP [dm3] 2R_11994753_SNP [dm6]	T	C	2.612e^-4	0.89	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
2R	3317635	2R_3317635_SNP [dm3] 2R_7430130_SNP [dm6]	T	A	2.625e^-4	0.89	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
2L	6027730	2L_6027730_SNP [dm3] 2L_6027730_SNP [dm6]	C	A	2.631e^-4	0.89	INTRON CG9109
2R	11984609	2R_11984609_SNP [dm3] 2R_16097104_SNP [dm6]	T	C	2.631e^-4	0.89	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14910313	X_14910313_SNP [dm3] X_15016280_SNP [dm6]	A	C	2.637e^-4	0.89	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	12209889	2L_12209889_SNP [dm3] 2L_12209889_SNP [dm6]	T	C	2.641e^-4	0.89	SYNONYMOUS_CODING CG31759 INTRON aret
3R	27459361	3R_27459361_INS [dm3] 3R_31633639_INS [dm6]	A	ACT	2.643e^-4	0.89	INTRON kek6
2L	16085283	2L_16085283_SNP [dm3] 2L_16085283_SNP [dm6]	C	G	2.661e^-4	0.89	INTERGENIC
2L	16437208	2L_16437208_SNP [dm3] 2L_16437208_SNP [dm6]	T	G	2.662e^-4	0.89	INTRON CG5888
2R	1127755	2R_1127755_DEL [dm3] 2R_5240250_DEL [dm6]	TT	T	2.664e^-4	0.89	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl
2L	7489584	2L_7489584_SNP [dm3] 2L_7489584_SNP [dm6]	T	G	2.671e^-4	0.89	INTRON Ziz
3R	23913749	3R_23913749_SNP [dm3] 3R_28088027_SNP [dm6]	A	G	2.671e^-4	0.89	UTR_3_PRIME CG34362	TF binding site BDTNP1_TFBS_twi
X	22111355	X_22111355_SNP [dm3] X_22709519_SNP [dm6]	C	A	2.695e^-4	0.89	INTRON CR44997	transposable element FlyBase
2L	1962669	2L_1962669_SNP [dm3] 2L_1962669_SNP [dm6]	C	T	2.711e^-4	0.89	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22111379	X_22111379_DEL [dm3] X_22709543_DEL [dm6]	GTGCG	G	2.715e^-4	0.89	INTRON CR44997	transposable element FlyBase
3L	4009057	3L_4009057_SNP [dm3] 3L_4009057_SNP [dm6]	G	T	2.717e^-4	0.89	INTERGENIC
3R	18496316	3R_18496316_SNP [dm3] 3R_22670594_SNP [dm6]	G	C	2.725e^-4	0.89	INTRON CG45058
X	22111867	X_22111867_INS [dm3] X_22710031_INS [dm6]	A	TACTCCTGGAGGCTCTGAGC...	2.730e^-4	0.89	INTRON CR44997	transposable element FlyBase
X	22111870	X_22111870_SNP [dm3] X_22710034_SNP [dm6]	A	C	2.730e^-4	0.89	INTRON CR44997	transposable element FlyBase
2L	12911350	2L_12911350_DEL [dm3] 2L_12911350_DEL [dm6]	TT	T	2.730e^-4	0.89	INTERGENIC
3L	3559224	3L_3559224_SNP [dm3] 3L_3559224_SNP [dm6]	A	T	2.731e^-4	0.89	INTRON Eip63E
2L	15764627	2L_15764627_SNP [dm3] 2L_15764627_SNP [dm6]	T	A	2.733e^-4	0.89	INTRON CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6008958	3R_6008958_SNP [dm3] 3R_10183236_SNP [dm6]	G	A	2.736e^-4	0.89	INTRON CG12814
2R	17763492	2R_17763492_SNP [dm3] 2R_21875987_SNP [dm6]	C	G	2.739e^-4	0.89	INTRON Fili
2L	14074183	2L_14074183_SNP [dm3] 2L_14074183_SNP [dm6]	T	C	2.743e^-4	0.89	INTRON nAChRalpha5
2R	7834410	2R_7834410_SNP [dm3] 2R_11946905_SNP [dm6]	A	C	2.745e^-4	0.89	INTRON CG13188
2L	17622489	2L_17622489_SNP [dm3] 2L_17622489_SNP [dm6]	C	G	2.747e^-4	0.89	INTERGENIC
2L	7040005	2L_7040005_SNP [dm3] 2L_7040005_SNP [dm6]	A	T	2.757e^-4	0.89	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18937879	2L_18937879_SNP [dm3] 2L_18937879_SNP [dm6]	A	G	2.769e^-4	0.89	INTRON ssp3
3R	18704408	3R_18704408_SNP [dm3] 3R_22878686_SNP [dm6]	G	A	2.773e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8795598	3L_8795598_SNP [dm3] 3L_8802498_SNP [dm6]	T	A	2.773e^-4	0.89	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311
2L	7368567	2L_7368567_SNP [dm3] 2L_7368567_SNP [dm6]	T	A	2.776e^-4	0.89	INTRON Wnt10
2R	7059535	2R_7059535_SNP [dm3] 2R_11172030_SNP [dm6]	C	A	2.792e^-4	0.89	UTR_5_PRIME CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
3R	23912386	3R_23912386_SNP [dm3] 3R_28086664_SNP [dm6]	T	A	2.801e^-4	0.89	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi
2R	7995970	2R_7995970_SNP [dm3] 2R_12108465_SNP [dm6]	A	G	2.804e^-4	0.89	INTRON jeb	TF binding site BDTNP1_TFBS_sna
X	22104297	X_22104297_DEL [dm3] X_22702461_DEL [dm6]	TT	T	2.808e^-4	0.89	INTRON CR44997	transposable element FlyBase
3R	213820	3R_213820_SNP [dm3] 3R_4388098_SNP [dm6]	T	C	2.810e^-4	0.89	SYNONYMOUS_CODING tub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12236804	2L_12236804_INS [dm3] 2L_12236804_INS [dm6]	T	TAAAAT	2.816e^-4	0.89	INTRON aret	TF binding site mE1_TFBS_inv
2L	5100605	2L_5100605_SNP [dm3] 2L_5100605_SNP [dm6]	C	T	2.823e^-4	0.89	UPSTREAM Msp300 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	13275539	3L_13275539_SNP [dm3] 3L_13282439_SNP [dm6]	A	G	2.824e^-4	0.89	EXON CR43146
3L	16736855	3L_16736855_SNP [dm3] 3L_16743755_SNP [dm6]	C	T	2.830e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	9207989	3L_9207989_SNP [dm3] 3L_9214889_SNP [dm6]	G	T	2.835e^-4	0.89	NON_SYNONYMOUS_CODING CG4476
2R	9437542	2R_9437542_SNP [dm3] 2R_13550037_SNP [dm6]	G	A	2.840e^-4	0.89	SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
3R	23404614	3R_23404614_DEL [dm3] 3R_27578892_DEL [dm6]	GG	G	2.840e^-4	0.89	INTRON wdb
3L	8810214	3L_8810214_SNP [dm3] 3L_8817114_SNP [dm6]	A	T	2.844e^-4	0.89	INTERGENIC
2R	5297589	2R_5297589_SNP [dm3] 2R_9410084_SNP [dm6]	C	T	2.844e^-4	0.89	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8500763	2L_8500763_SNP [dm3] 2L_8500763_SNP [dm6]	G	A	2.845e^-4	0.89	INTRON Dh31
X	7742286	X_7742286_INS [dm3] X_7848253_INS [dm6]	C	CGT	2.851e^-4	0.89	INTERGENIC
2R	16008953	2R_16008953_INS [dm3] 2R_20121448_INS [dm6]	C	CAC	2.854e^-4	0.89	INTERGENIC
3L	12657340	3L_12657340_SNP [dm3] 3L_12664240_SNP [dm6]	C	A	2.854e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10596103	2R_10596103_DEL [dm3] 2R_14708598_DEL [dm6]	CT	C	2.858e^-4	0.89	INTRON mspo
2R	6706046	2R_6706046_SNP [dm3] 2R_10818541_SNP [dm6]	A	C	2.859e^-4	0.89	SPLICE_SITE_REGION dgo INTRON dgo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24562105	3R_24562105_SNP [dm3] 3R_28736383_SNP [dm6]	C	A	2.862e^-4	0.89	DOWNSTREAM AstA-R2 INTERGENIC
2L	16093120	2L_16093120_SNP [dm3] 2L_16093120_SNP [dm6]	T	A	2.872e^-4	0.89	INTERGENIC
2R	14715142	2R_14715142_SNP [dm3] 2R_18827637_SNP [dm6]	G	A	2.879e^-4	0.89	INTRON CG15097
3R	20919782	3R_20919782_SNP [dm3] 3R_25094060_SNP [dm6]	G	A	2.893e^-4	0.89	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	10746927	3L_10746927_SNP [dm3] 3L_10753827_SNP [dm6]	C	T	2.899e^-4	0.89	INTERGENIC
X	13342748	X_13342748_SNP [dm3] X_13448715_SNP [dm6]	C	T	2.904e^-4	0.89	INTRON Neto
2R	15134733	2R_15134733_SNP [dm3] 2R_19247228_SNP [dm6]	G	T	2.906e^-4	0.89	INTERGENIC
2L	16437216	2L_16437216_SNP [dm3] 2L_16437216_SNP [dm6]	T	A	2.908e^-4	0.89	INTRON CG5888
3L	10807546	3L_10807546_SNP [dm3] 3L_10814446_SNP [dm6]	T	C	2.910e^-4	0.89	UPSTREAM CG42831 INTERGENIC
2R	6273271	2R_6273271_SNP [dm3] 2R_10385766_SNP [dm6]	A	T	2.913e^-4	0.89	INTRON CG42732
3R	26393157	3R_26393157_SNP [dm3] 3R_30567435_SNP [dm6]	A	T	2.933e^-4	0.89	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11295633	2R_11295633_SNP [dm3] 2R_15408128_SNP [dm6]	G	C	2.937e^-4	0.89	UPSTREAM Mtk INTRON CG43729
2R	18371943	2R_18371943_SNP [dm3] 2R_22484438_SNP [dm6]	T	C	2.944e^-4	0.89	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7615724	X_7615724_SNP [dm3] X_7721691_SNP [dm6]	C	T	2.949e^-4	0.89	UPSTREAM Hira INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19586309	3R_19586309_SNP [dm3] 3R_23760587_SNP [dm6]	G	A	2.961e^-4	0.89	START_GAINED CG10219 UTR_5_PRIME CG10219 DOWNSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14112993	3L_14112993_SNP [dm3] 3L_14119893_SNP [dm6]	G	T	2.964e^-4	0.89	INTRON Sox21b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9326433	3L_9326433_INS [dm3] 3L_9333333_INS [dm6]	A	ATA	2.971e^-4	0.89	UPSTREAM PGRP-LA INTERGENIC
3L	12965937	3L_12965937_SNP [dm3] 3L_12972837_SNP [dm6]	T	G	2.975e^-4	0.89	SYNONYMOUS_CODING CG10749 UPSTREAM CG10748
2L	22915854	2L_22915854_DEL [dm3] 2L_23023122_DEL [dm6]	CTACTC	C	2.975e^-4	0.89	INTRON Cht3
3R	24673050	3R_24673050_SNP [dm3] 3R_28847328_SNP [dm6]	A	T	2.980e^-4	0.89	INTRON spg
3L	10700990	3L_10700990_SNP [dm3] 3L_10707890_SNP [dm6]	C	A	3.000e^-4	0.89	INTERGENIC
3R	22754143	3R_22754143_SNP [dm3] 3R_26928421_SNP [dm6]	T	C	3.003e^-4	0.89	INTRON sda
2L	13050025	2L_13050025_SNP [dm3] 2L_13050025_SNP [dm6]	C	T	3.005e^-4	0.89	INTRON CG9932
2R	16597390	2R_16597390_SNP [dm3] 2R_20709885_SNP [dm6]	C	T	3.009e^-4	0.89	INTRON dpr
X	4095367	X_4095367_SNP [dm3] X_4201334_SNP [dm6]	C	T	3.009e^-4	0.89	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18665004	3R_18665004_SNP [dm3] 3R_22839282_SNP [dm6]	T	C	3.018e^-4	0.89	INTERGENIC
X	15420862	X_15420862_SNP [dm3] X_15526829_SNP [dm6]	G	T	3.031e^-4	0.89	INTRON Ac13E
X	15420866	X_15420866_SNP [dm3] X_15526833_SNP [dm6]	G	A	3.031e^-4	0.89	INTRON Ac13E
X	15420879	X_15420879_SNP [dm3] X_15526846_SNP [dm6]	T	C	3.031e^-4	0.89	INTRON Ac13E
3R	17306106	3R_17306106_INS [dm3] 3R_21480384_INS [dm6]	T	TCTCA	3.035e^-4	0.89	INTERGENIC
3R	14611903	3R_14611903_SNP [dm3] 3R_18786181_SNP [dm6]	A	C	3.036e^-4	0.89	INTRON CG7720
2L	4343247	2L_4343247_SNP [dm3] 2L_4343247_SNP [dm6]	G	A	3.040e^-4	0.89	SYNONYMOUS_CODING Atet UPSTREAM mir-1005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14694174	X_14694174_SNP [dm3] X_14800141_SNP [dm6]	T	C	3.043e^-4	0.89	INTRON rut
3R	4211413	3R_4211413_SNP [dm3] 3R_8385691_SNP [dm6]	C	A	3.049e^-4	0.89	NON_SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20172707	2R_20172707_SNP [dm3] 2R_24285184_SNP [dm6]	G	A	3.051e^-4	0.89	INTRON nvy
3R	23413413	3R_23413413_SNP [dm3] 3R_27587691_SNP [dm6]	G	A	3.052e^-4	0.89	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1813321	2R_1813321_SNP [dm3] 2R_5925816_SNP [dm6]	A	C	3.057e^-4	0.89	SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad
2R	11223485	2R_11223485_SNP [dm3] 2R_15335980_SNP [dm6]	A	G	3.058e^-4	0.89	INTRON Hr51	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5971982	3R_5971982_SNP [dm3] 3R_10146260_SNP [dm6]	G	T	3.060e^-4	0.89	INTRON Invadolysin
2L	11684958	2L_11684958_SNP [dm3] 2L_11684958_SNP [dm6]	C	T	3.071e^-4	0.89	INTERGENIC
2L	15148323	2L_15148323_SNP [dm3] 2L_15148323_SNP [dm6]	G	A	3.071e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2591078	X_2591078_SNP [dm3] X_2697045_SNP [dm6]	C	A	3.079e^-4	0.89	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26967757	3R_26967757_SNP [dm3] 3R_31142035_SNP [dm6]	G	A	3.081e^-4	0.89	INTRON Gycbeta100B
3L	12287106	3L_12287106_SNP [dm3] 3L_12294006_SNP [dm6]	T	C	3.085e^-4	0.89	INTRON CG4328
3R	24428214	3R_24428214_SNP [dm3] 3R_28602492_SNP [dm6]	A	C	3.085e^-4	0.89	UPSTREAM snoRNA:Psi28S-3405d & 1 other DOWNSTREAM snoRNA:Psi28S-3405a & 4 others INTRON Hrb98DE	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	15713421	2R_15713421_SNP [dm3] 2R_19825916_SNP [dm6]	C	T	3.087e^-4	0.89	UPSTREAM Toll-7 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25137223	3R_25137223_SNP [dm3] 3R_29311501_SNP [dm6]	C	A	3.088e^-4	0.89	INTERGENIC
3L	15192021	3L_15192021_SNP [dm3] 3L_15198921_SNP [dm6]	A	G	3.094e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7882199	2R_7882199_SNP [dm3] 2R_11994694_SNP [dm6]	A	C	3.097e^-4	0.89	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319	transposable element FlyBase
X	22111343	X_22111343_SNP [dm3] X_22709507_SNP [dm6]	T	C	3.098e^-4	0.89	INTRON CR44997	transposable element FlyBase
2L	18747541	2L_18747541_SNP [dm3] 2L_18747541_SNP [dm6]	G	A	3.100e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4057188	2L_4057188_SNP [dm3] 2L_4057188_SNP [dm6]	T	C	3.110e^-4	0.89	INTRON ed	TF binding site BDTNP1_TFBS_dl
3R	11777835	3R_11777835_DEL [dm3] 3R_15952113_DEL [dm6]	CAG	C	3.115e^-4	0.89	INTRON Sap47	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	20493459	3R_20493459_SNP [dm3] 3R_24667737_SNP [dm6]	A	G	3.117e^-4	0.89	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2R	11545260	2R_11545260_SNP [dm3] 2R_15657755_SNP [dm6]	A	G	3.120e^-4	0.89	UTR_3_PRIME fus DOWNSTREAM mir-278 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	17306109	3R_17306109_MNP [dm3] 3R_21480387_MNP [dm6]	CCT	GAA	3.132e^-4	0.89	INTERGENIC
2R	7882286	2R_7882286_SNP [dm3] 2R_11994781_SNP [dm6]	A	T	3.133e^-4	0.89	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
3L	12797391	3L_12797391_SNP [dm3] 3L_12804291_SNP [dm6]	T	A	3.141e^-4	0.89	INTRON Atg1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5616414	2L_5616414_SNP [dm3] 2L_5616414_SNP [dm6]	G	A	3.145e^-4	0.89	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3321267	2L_3321267_SNP [dm3] 2L_3321267_SNP [dm6]	C	T	3.145e^-4	0.89	INTRON CG8837	TF binding site mE1_TFBS_chinmo
3L	12809925	3L_12809925_SNP [dm3] 3L_12816825_SNP [dm6]	G	A	3.145e^-4	0.89	NON_SYNONYMOUS_CODING CG42588
X	9762803	X_9762803_SNP [dm3] X_9868770_SNP [dm6]	T	C	3.146e^-4	0.89	UPSTREAM CG45060 INTERGENIC
2L	13673143	2L_13673143_SNP [dm3] 2L_13673143_SNP [dm6]	A	T	3.152e^-4	0.89	DOWNSTREAM CG18507 INTERGENIC
3R	15779366	3R_15779366_DEL [dm3] 3R_19953644_DEL [dm6]	TCTCT	T	3.155e^-4	0.89	INTRON Hs6st
2R	15745782	2R_15745782_SNP [dm3] 2R_19858277_SNP [dm6]	T	A	3.183e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16932283	3L_16932283_DEL [dm3] 3L_16939183_DEL [dm6]	CTG	C	3.184e^-4	0.89	UTR_3_PRIME Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo
2L	16437220	2L_16437220_SNP [dm3] 2L_16437220_SNP [dm6]	T	G	3.190e^-4	0.89	INTRON CG5888
X	15420873	X_15420873_SNP [dm3] X_15526840_SNP [dm6]	C	T	3.193e^-4	0.89	INTRON Ac13E
2R	9779724	2R_9779724_SNP [dm3] 2R_13892219_SNP [dm6]	G	A	3.196e^-4	0.89	SYNONYMOUS_CODING shot INTRON shot
X	5361571	X_5361571_SNP [dm3] X_5467538_SNP [dm6]	A	C	3.197e^-4	0.89	INTRON SPR
3L	2904581	3L_2904581_SNP [dm3] 3L_2904581_SNP [dm6]	A	T	3.197e^-4	0.89	INTRON Shab
X	3926565	X_3926565_SNP [dm3] X_4032532_SNP [dm6]	G	A	3.201e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3683710	2R_3683710_SNP [dm3] 2R_7796205_SNP [dm6]	G	A	3.207e^-4	0.89	INTRON mus205
3L	5922901	3L_5922901_SNP [dm3] 3L_5929801_SNP [dm6]	T	C	3.211e^-4	0.89	UTR_3_PRIME Vap-33B DOWNSTREAM Rcc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10108364	2L_10108364_SNP [dm3] 2L_10108364_SNP [dm6]	G	A	3.212e^-4	0.89	INTRON CG44153 & 1 other
2L	7995707	2L_7995707_SNP [dm3] 2L_7995707_SNP [dm6]	T	G	3.228e^-4	0.89	INTRON CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	911437	3L_911437_SNP [dm3] 3L_911437_SNP [dm6]	A	G	3.230e^-4	0.89	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
X	7880704	X_7880704_SNP [dm3] X_7986671_SNP [dm6]	G	T	3.233e^-4	0.89	DOWNSTREAM sn INTERGENIC
X	3867592	X_3867592_DEL [dm3] X_3973559_DEL [dm6]	TT	T	3.237e^-4	0.89	INTERGENIC
3R	6008877	3R_6008877_DEL [dm3] 3R_10183155_DEL [dm6]	AGTCCGAAGTGCATCTTCAT...	A	3.241e^-4	0.89	INTRON CG12814
3R	18664539	3R_18664539_SNP [dm3] 3R_22838817_SNP [dm6]	C	T	3.245e^-4	0.89	INTERGENIC
3L	13739188	3L_13739188_SNP [dm3] 3L_13746088_SNP [dm6]	G	T	3.246e^-4	0.89	INTRON bru-3
X	14034200	X_14034200_SNP [dm3] X_14140167_SNP [dm6]	T	C	3.251e^-4	0.89	INTERGENIC
2L	5758679	2L_5758679_SNP [dm3] 2L_5758679_SNP [dm6]	T	G	3.258e^-4	0.89	INTRON CG11030	TF binding site mE1_TFBS_cad
3R	27458253	3R_27458253_SNP [dm3] 3R_31632531_SNP [dm6]	A	G	3.269e^-4	0.89	INTRON kek6
3L	9745173	3L_9745173_SNP [dm3] 3L_9752073_SNP [dm6]	A	G	3.280e^-4	0.89	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13879964	2R_13879964_SNP [dm3] 2R_17992459_SNP [dm6]	C	T	3.282e^-4	0.89	INTRON dpr13	TF binding site mE1_TFBS_chinmo
3L	14691900	3L_14691900_SNP [dm3] 3L_14698800_SNP [dm6]	C	G	3.286e^-4	0.89	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG17177 INTRON ome
X	16007251	X_16007251_SNP [dm3] X_16113218_SNP [dm6]	A	T	3.300e^-4	0.89	INTERGENIC
2L	7588582	2L_7588582_SNP [dm3] 2L_7588582_SNP [dm6]	G	T	3.305e^-4	0.89	INTERGENIC
2R	12015951	2R_12015951_SNP [dm3] 2R_16128446_SNP [dm6]	G	A	3.312e^-4	0.89	INTRON spin
3R	23186898	3R_23186898_SNP [dm3] 3R_27361176_SNP [dm6]	G	T	3.317e^-4	0.89	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3R	27459026	3R_27459026_SNP [dm3] 3R_31633304_SNP [dm6]	G	A	3.317e^-4	0.89	INTRON kek6
2L	1697505	2L_1697505_SNP [dm3] 2L_1697505_SNP [dm6]	A	G	3.319e^-4	0.89	UTR_3_PRIME chinmo
2L	4738218	2L_4738218_SNP [dm3] 2L_4738218_SNP [dm6]	C	T	3.331e^-4	0.89	INTRON CG15630	TF binding site mE1_TFBS_inv
2L	5101010	2L_5101010_SNP [dm3] 2L_5101010_SNP [dm6]	T	A	3.331e^-4	0.89	UTR_5_PRIME Msp300 UPSTREAM CG8680
2R	18373156	2R_18373156_SNP [dm3] 2R_22485651_SNP [dm6]	A	T	3.338e^-4	0.89	NON_SYNONYMOUS_CODING CG4554
X	8259619	X_8259619_INS [dm3] X_8365586_INS [dm6]	C	CGCACAC	3.339e^-4	0.89	UTR_5_PRIME nAChRalpha3
2R	14399715	2R_14399715_SNP [dm3] 2R_18512210_SNP [dm6]	G	A	3.343e^-4	0.89	INTERGENIC
3L	9802265	3L_9802265_SNP [dm3] 3L_9809165_SNP [dm6]	A	T	3.345e^-4	0.89	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18939591	2R_18939591_SNP [dm3] 2R_23052068_SNP [dm6]	C	T	3.355e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23419985	3R_23419985_SNP [dm3] 3R_27594263_SNP [dm6]	T	C	3.355e^-4	0.89	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19266649	2R_19266649_SNP [dm3] 2R_23379126_SNP [dm6]	T	C	3.356e^-4	0.89	SYNONYMOUS_CODING yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1826126	2R_1826126_SNP [dm3] 2R_5938621_SNP [dm6]	C	T	3.363e^-4	0.89	INTRON CR44126	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7835030	2R_7835030_SNP [dm3] 2R_11947525_SNP [dm6]	T	C	3.366e^-4	0.89	INTRON CG13188
3L	16863706	3L_16863706_SNP [dm3] 3L_16870606_SNP [dm6]	A	T	3.366e^-4	0.89	INTRON Lmpt
2L	19811925	2L_19811925_SNP [dm3] 2L_19811925_SNP [dm6]	G	T	3.368e^-4	0.89	UPSTREAM snRNA:U2:38ABb DOWNSTREAM snRNA:U5:38ABa INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18894405	3R_18894405_DEL [dm3] 3R_23068683_DEL [dm6]	TTAGTATCA	T	3.370e^-4	0.89	INTERGENIC
2R	14688107	2R_14688107_SNP [dm3] 2R_18800602_SNP [dm6]	T	C	3.370e^-4	0.89	INTRON l_2_08717	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	7040273	2L_7040273_SNP [dm3] 2L_7040273_SNP [dm6]	C	T	3.384e^-4	0.89	INTRON milt
X	4095215	X_4095215_SNP [dm3] X_4201182_SNP [dm6]	C	A	3.385e^-4	0.89	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23977841	3R_23977841_SNP [dm3] 3R_28152119_SNP [dm6]	A	G	3.386e^-4	0.89	INTRON CG34354
3L	13734565	3L_13734565_INS [dm3] 3L_13741465_INS [dm6]	T	TCAT	3.387e^-4	0.89	INTRON bru-3
2R	18081002	2R_18081002_SNP [dm3] 2R_22193497_SNP [dm6]	C	T	3.388e^-4	0.89	UPSTREAM Swim INTRON Swim	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1290509	3L_1290509_SNP [dm3] 3L_1290509_SNP [dm6]	G	C	3.390e^-4	0.89	INTRON CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12881830	2L_12881830_SNP [dm3] 2L_12881830_SNP [dm6]	G	T	3.391e^-4	0.89	INTERGENIC
3L	8604800	3L_8604800_SNP [dm3] 3L_8611700_SNP [dm6]	T	C	3.398e^-4	0.89	INTRON CG6282
3L	1290006	3L_1290006_SNP [dm3] 3L_1290006_SNP [dm6]	G	A	3.399e^-4	0.89	NON_SYNONYMOUS_CODING CG32333 INTRON CG32333
2L	13335238	2L_13335238_SNP [dm3] 2L_13335238_SNP [dm6]	T	C	3.402e^-4	0.89	INTERGENIC
3R	26393133	3R_26393133_SNP [dm3] 3R_30567411_SNP [dm6]	T	A	3.423e^-4	0.89	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	22111762	X_22111762_SNP [dm3] X_22709926_SNP [dm6]	T	C	3.436e^-4	0.89	INTRON CR44997	transposable element FlyBase
2L	18065366	2L_18065366_SNP [dm3] 2L_18065366_SNP [dm6]	G	A	3.436e^-4	0.89	SYNONYMOUS_CODING rdo
2R	7882197	2R_7882197_SNP [dm3] 2R_11994692_SNP [dm6]	A	T	3.437e^-4	0.89	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319	transposable element FlyBase
3L	10748940	3L_10748940_SNP [dm3] 3L_10755840_SNP [dm6]	C	A	3.437e^-4	0.89	INTERGENIC
2R	15067824	2R_15067824_SNP [dm3] 2R_19180319_SNP [dm6]	G	T	3.438e^-4	0.89	INTRON hppy
3R	20493485	3R_20493485_SNP [dm3] 3R_24667763_SNP [dm6]	T	A	3.441e^-4	0.89	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
3R	17926678	3R_17926678_SNP [dm3] 3R_22100956_SNP [dm6]	A	C	3.451e^-4	0.89	INTRON CG5778
3L	4650655	3L_4650655_SNP [dm3] 3L_4650655_SNP [dm6]	T	C	3.459e^-4	0.89	SYNONYMOUS_CODING axo DOWNSTREAM CG32238
3L	14855940	3L_14855940_SNP [dm3] 3L_14862840_SNP [dm6]	T	C	3.463e^-4	0.89	INTRON CG17839	TF binding site mE1_TFBS_inv
3L	1359915	3L_1359915_DEL [dm3] 3L_1359915_DEL [dm6]	TCCA	C	3.476e^-4	0.89	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11646898	2L_11646898_SNP [dm3] 2L_11646898_SNP [dm6]	T	A	3.477e^-4	0.89	INTRON CG6614
2L	14414832	2L_14414832_SNP [dm3] 2L_14414832_SNP [dm6]	G	A	3.483e^-4	0.89	INTERGENIC
2L	10343004	2L_10343004_SNP [dm3] 2L_10343004_SNP [dm6]	A	G	3.493e^-4	0.89	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10097108	3L_10097108_SNP [dm3] 3L_10104008_SNP [dm6]	A	G	3.494e^-4	0.89	INTRON dpr6
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	3.497e^-4	0.89	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12950985	2R_12950985_SNP [dm3] 2R_17063480_SNP [dm6]	A	G	3.500e^-4	0.89	SYNONYMOUS_CODING CG6967 UPSTREAM CG8950	TF binding site mE1_TFBS_sens
X	7880734	X_7880734_SNP [dm3] X_7986701_SNP [dm6]	G	C	3.502e^-4	0.89	DOWNSTREAM sn INTERGENIC
2R	5273530	2R_5273530_INS [dm3] 2R_9386025_INS [dm6]	C	CGC	3.508e^-4	0.89	INTRON CG13954
2R	5273555	2R_5273555_SNP [dm3] 2R_9386050_SNP [dm6]	T	C	3.508e^-4	0.89	INTRON CG13954
2L	12236818	2L_12236818_DEL [dm3] 2L_12236818_DEL [dm6]	CCAGC	C	3.508e^-4	0.89	INTRON aret	TF binding site mE1_TFBS_inv
X	22052325	X_22052325_SNP [dm3] X_22650489_SNP [dm6]	G	T	3.525e^-4	0.89	INTERGENIC
2L	1518865	2L_1518865_SNP [dm3] 2L_1518865_SNP [dm6]	T	A	3.534e^-4	0.89	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	10411249	2L_10411249_SNP [dm3] 2L_10411249_SNP [dm6]	C	T	3.534e^-4	0.89	SYNONYMOUS_CODING CG5355 DOWNSTREAM RpS27A
2R	16597352	2R_16597352_SNP [dm3] 2R_20709847_SNP [dm6]	G	C	3.535e^-4	0.89	INTRON dpr
2R	13976233	2R_13976233_SNP [dm3] 2R_18088728_SNP [dm6]	C	G	3.537e^-4	0.89	INTRON CG34386
3R	683055	3R_683055_SNP [dm3] 3R_4857333_SNP [dm6]	C	A	3.546e^-4	0.89	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	3.562e^-4	0.89	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4596986	2R_4596986_SNP [dm3] 2R_8709481_SNP [dm6]	G	A	3.565e^-4	0.89	START_GAINED CG14744 UTR_5_PRIME CG14744 UPSTREAM PGRP-SC1a DOWNSTREAM CG14743
2R	6277553	2R_6277553_DEL [dm3] 2R_10390048_DEL [dm6]	AT	A	3.582e^-4	0.89	INTRON CG42732
X	14694105	X_14694105_SNP [dm3] X_14800072_SNP [dm6]	A	G	3.585e^-4	0.89	SYNONYMOUS_CODING rut
2L	7860070	2L_7860070_DEL [dm3] 2L_7860070_DEL [dm6]	CACTG	C	3.591e^-4	0.89	UTR_3_PRIME lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_twi
3R	17017016	3R_17017016_DEL [dm3] 3R_21191294_DEL [dm6]	CC	C	3.593e^-4	0.89	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17409756	2R_17409756_SNP [dm3] 2R_21522251_SNP [dm6]	C	G	3.593e^-4	0.89	UPSTREAM Egfr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	11375220	X_11375220_SNP [dm3] X_11481187_SNP [dm6]	C	A	3.595e^-4	0.89	INTRON Cyp4g15
3L	9802267	3L_9802267_SNP [dm3] 3L_9809167_SNP [dm6]	A	G	3.603e^-4	0.89	DOWNSTREAM CG32052 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9011635	2L_9011635_SNP [dm3] 2L_9011635_SNP [dm6]	G	A	3.607e^-4	0.89	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	3046215	3L_3046215_SNP [dm3] 3L_3046215_SNP [dm6]	T	C	3.607e^-4	0.89	SPLICE_SITE_REGION scramb2 SYNONYMOUS_CODING scramb2 UPSTREAM Sk2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	3046220	3L_3046220_SNP [dm3] 3L_3046220_SNP [dm6]	C	T	3.607e^-4	0.89	SPLICE_SITE_REGION scramb2 UPSTREAM Sk2 INTRON scramb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15381439	2R_15381439_INS [dm3] 2R_19493934_INS [dm6]	A	ATTTT	3.611e^-4	0.89	UTR_3_PRIME Rep DOWNSTREAM hpo
2R	10596460	2R_10596460_SNP [dm3] 2R_14708955_SNP [dm6]	A	T	3.621e^-4	0.89	INTRON mspo
2R	9513499	2R_9513499_SNP [dm3] 2R_13625994_SNP [dm6]	T	C	3.622e^-4	0.89	INTRON fas
3L	9296031	3L_9296031_SNP [dm3] 3L_9302931_SNP [dm6]	A	G	3.622e^-4	0.89	INTERGENIC
X	16596654	X_16596654_SNP [dm3] X_16702621_SNP [dm6]	A	G	3.624e^-4	0.89	UPSTREAM spheroide DOWNSTREAM CG9673 INTRON CG4678
3L	14428802	3L_14428802_DEL [dm3] 3L_14435702_DEL [dm6]	AT	A	3.640e^-4	0.89	INTRON bbg
2L	13744214	2L_13744214_SNP [dm3] 2L_13744214_SNP [dm6]	T	C	3.643e^-4	0.89	INTERGENIC
3R	16194898	3R_16194898_SNP [dm3] 3R_20369176_SNP [dm6]	A	G	3.650e^-4	0.89	INTERGENIC
3L	3145052	3L_3145052_SNP [dm3] 3L_3145052_SNP [dm6]	C	T	3.654e^-4	0.89	NON_SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2579584	2L_2579584_SNP [dm3] 2L_2579584_SNP [dm6]	A	C	3.657e^-4	0.89	UPSTREAM Arpc5 DOWNSTREAM Elba2 INTRON CG3214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	27459360	3R_27459360_SNP [dm3] 3R_31633638_SNP [dm6]	G	C	3.665e^-4	0.89	INTRON kek6
2R	15381433	2R_15381433_DEL [dm3] 2R_19493928_DEL [dm6]	TACA	T	3.668e^-4	0.89	UTR_3_PRIME Rep DOWNSTREAM hpo
2L	12700603	2L_12700603_SNP [dm3] 2L_12700603_SNP [dm6]	A	T	3.673e^-4	0.89	UTR_5_PRIME CG17036 DOWNSTREAM CG5776	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1811143	2R_1811143_SNP [dm3] 2R_5923638_SNP [dm6]	G	A	3.676e^-4	0.89	INTRON CG43366	transposable element FlyBase
2R	12400485	2R_12400485_SNP [dm3] 2R_16512980_SNP [dm6]	G	T	3.679e^-4	0.89	INTRON Sema-2a
2L	18570261	2L_18570261_SNP [dm3] 2L_18570261_SNP [dm6]	A	T	3.700e^-4	0.89	INTRON Pde11
2L	2579604	2L_2579604_SNP [dm3] 2L_2579604_SNP [dm6]	G	A	3.701e^-4	0.89	UPSTREAM Arpc5 DOWNSTREAM Elba2 INTRON CG3214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	687018	3R_687018_SNP [dm3] 3R_4861296_SNP [dm6]	C	T	3.705e^-4	0.89	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	3.714e^-4	0.89	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13313933	2L_13313933_SNP [dm3] 2L_13313933_SNP [dm6]	A	G	3.734e^-4	0.89	INTRON CG43778
3L	3522754	3L_3522754_DEL [dm3] 3L_3522754_DEL [dm6]	TCAGTTG	T	3.736e^-4	0.89	DOWNSTREAM CR45043 INTRON Eip63E
2L	10488712	2L_10488712_SNP [dm3] 2L_10488712_SNP [dm6]	T	C	3.736e^-4	0.89	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9513544	2R_9513544_SNP [dm3] 2R_13626039_SNP [dm6]	C	T	3.738e^-4	0.89	INTRON fas
3R	16887604	3R_16887604_SNP [dm3] 3R_21061882_SNP [dm6]	A	G	3.749e^-4	0.89	UTR_3_PRIME Cortactin	TF binding site BDTNP1_TFBS_dl
3L	8809448	3L_8809448_SNP [dm3] 3L_8816348_SNP [dm6]	A	G	3.750e^-4	0.89	INTERGENIC
X	3376778	X_3376778_SNP [dm3] X_3482745_SNP [dm6]	C	T	3.756e^-4	0.89	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5612303	2L_5612303_SNP [dm3] 2L_5612303_SNP [dm6]	C	T	3.764e^-4	0.89	INTRON CG14010
3L	16673799	3L_16673799_SNP [dm3] 3L_16680699_SNP [dm6]	T	A	3.765e^-4	0.89	INTRON Lasp & 1 other
3L	13842140	3L_13842140_SNP [dm3] 3L_13849040_SNP [dm6]	T	C	3.769e^-4	0.89	INTRON Hml
2R	17227525	2R_17227525_SNP [dm3] 2R_21340020_SNP [dm6]	T	C	3.779e^-4	0.89	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15053743	3R_15053743_SNP [dm3] 3R_19228021_SNP [dm6]	G	A	3.794e^-4	0.89	SYNONYMOUS_CODING CG11703 DOWNSTREAM CG5250	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20189290	2R_20189290_SNP [dm3] 2R_24301767_SNP [dm6]	G	T	3.796e^-4	0.89	INTERGENIC
3L	3559225	3L_3559225_SNP [dm3] 3L_3559225_SNP [dm6]	T	C	3.798e^-4	0.89	INTRON Eip63E
X	3927528	X_3927528_SNP [dm3] X_4033495_SNP [dm6]	A	G	3.799e^-4	0.89	INTERGENIC
2L	10100587	2L_10100587_SNP [dm3] 2L_10100587_SNP [dm6]	C	A	3.800e^-4	0.89	INTRON CG34109 & 1 other
2L	13335219	2L_13335219_SNP [dm3] 2L_13335219_SNP [dm6]	G	T	3.812e^-4	0.89	INTERGENIC
2L	16198166	2L_16198166_SNP [dm3] 2L_16198166_SNP [dm6]	A	G	3.814e^-4	0.89	INTERGENIC
3L	13845657	3L_13845657_DEL [dm3] 3L_13852557_DEL [dm6]	TT	T	3.816e^-4	0.89	INTRON Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12994086	3L_12994086_SNP [dm3] 3L_13000986_SNP [dm6]	G	A	3.818e^-4	0.89	INTERGENIC
3R	12827689	3R_12827689_SNP [dm3] 3R_17001967_SNP [dm6]	G	A	3.830e^-4	0.89	SYNONYMOUS_CODING CG16941 UPSTREAM Irc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	6027735	2L_6027735_SNP [dm3] 2L_6027735_SNP [dm6]	G	C	3.835e^-4	0.89	INTRON CG9109
X	14913997	X_14913997_SNP [dm3] X_15019964_SNP [dm6]	T	A	3.845e^-4	0.89	INTRON hiw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
X	16056433	X_16056433_SNP [dm3] X_16162400_SNP [dm6]	T	C	3.854e^-4	0.89	INTERGENIC
3L	12085915	3L_12085915_SNP [dm3] 3L_12092815_SNP [dm6]	G	A	3.858e^-4	0.89	INTERGENIC
X	6799082	X_6799082_SNP [dm3] X_6905049_SNP [dm6]	C	A	3.858e^-4	0.89	INTERGENIC
2L	16049521	2L_16049521_SNP [dm3] 2L_16049521_SNP [dm6]	A	G	3.858e^-4	0.89	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16611058	2R_16611058_SNP [dm3] 2R_20723553_SNP [dm6]	T	C	3.860e^-4	0.89	DOWNSTREAM CR44660 INTRON dpr
2R	9731958	2R_9731958_SNP [dm3] 2R_13844453_SNP [dm6]	C	T	3.861e^-4	0.89	INTRON Syngr
X	2876744	X_2876744_SNP [dm3] X_2982711_SNP [dm6]	T	C	3.861e^-4	0.89	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1924114	3L_1924114_SNP [dm3] 3L_1924114_SNP [dm6]	T	C	3.865e^-4	0.89	INTRON Dbx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	14399724	2R_14399724_SNP [dm3] 2R_18512219_SNP [dm6]	G	A	3.866e^-4	0.89	INTERGENIC
2R	4950464	2R_4950464_SNP [dm3] 2R_9062959_SNP [dm6]	G	T	3.868e^-4	0.89	INTRON ana	regulatory region REDfly_CRMs
3L	3919249	3L_3919249_SNP [dm3] 3L_3919249_SNP [dm6]	T	C	3.882e^-4	0.89	INTRON Eip63F-1
2L	12005936	2L_12005936_SNP [dm3] 2L_12005936_SNP [dm6]	A	C	3.882e^-4	0.89	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12882796	2L_12882796_SNP [dm3] 2L_12882796_SNP [dm6]	G	A	3.884e^-4	0.89	INTERGENIC
2R	13838903	2R_13838903_SNP [dm3] 2R_17951398_SNP [dm6]	G	C	3.887e^-4	0.89	INTERGENIC
2L	1518883	2L_1518883_SNP [dm3] 2L_1518883_SNP [dm6]	A	T	3.888e^-4	0.89	UPSTREAM halo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	20539562	3R_20539562_SNP [dm3] 3R_24713840_SNP [dm6]	C	T	3.889e^-4	0.89	UPSTREAM CG13627 INTRON CG13627
2R	19261004	2R_19261004_SNP [dm3] 2R_23373481_SNP [dm6]	T	G	3.893e^-4	0.89	NON_SYNONYMOUS_CODING Golgin245	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15114150	3R_15114150_SNP [dm3] 3R_19288428_SNP [dm6]	T	A	3.896e^-4	0.89	EXON CR43451
2L	12948142	2L_12948142_SNP [dm3] 2L_12948142_SNP [dm6]	A	G	3.903e^-4	0.89	INTERGENIC
3R	23865100	3R_23865100_SNP [dm3] 3R_28039378_SNP [dm6]	T	C	3.905e^-4	0.89	INTRON CG34362
2L	6584851	2L_6584851_SNP [dm3] 2L_6584851_SNP [dm6]	A	C	3.912e^-4	0.89	INTRON CG11319
3R	23416417	3R_23416417_SNP [dm3] 3R_27590695_SNP [dm6]	G	A	3.915e^-4	0.89	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7860100	2L_7860100_DEL [dm3] 2L_7860100_DEL [dm6]	TTTTGT	T	3.916e^-4	0.89	UTR_3_PRIME lectin-28C INTRON TwdlE
2L	7860110	2L_7860110_INS [dm3] 2L_7860110_INS [dm6]	C	CC	3.916e^-4	0.89	UTR_3_PRIME lectin-28C INTRON TwdlE
3L	13839291	3L_13839291_SNP [dm3] 3L_13846191_SNP [dm6]	C	T	3.918e^-4	0.89	UTR_5_PRIME Hml DOWNSTREAM Tsp68C
2R	13760130	2R_13760130_SNP [dm3] 2R_17872625_SNP [dm6]	G	A	3.921e^-4	0.89	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1238087	2L_1238087_SNP [dm3] 2L_1238087_SNP [dm6]	A	G	3.922e^-4	0.89	INTERGENIC
2R	5287568	2R_5287568_DEL [dm3] 2R_9400063_DEL [dm6]	CAC	C	3.925e^-4	0.89	UTR_5_PRIME CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2R	4642803	2R_4642803_SNP [dm3] 2R_8755298_SNP [dm6]	A	T	3.929e^-4	0.89	INTRON CG8740
2L	11227300	2L_11227300_SNP [dm3] 2L_11227300_SNP [dm6]	T	A	3.930e^-4	0.89	INTRON ab
3L	8810189	3L_8810189_DEL [dm3] 3L_8817089_DEL [dm6]	GC	A	3.950e^-4	0.89	INTERGENIC
2R	4436163	2R_4436163_SNP [dm3] 2R_8548658_SNP [dm6]	A	G	3.953e^-4	0.89	INTERGENIC
2L	12948156	2L_12948156_SNP [dm3] 2L_12948156_SNP [dm6]	G	T	3.955e^-4	0.89	INTERGENIC
3L	2904588	3L_2904588_SNP [dm3] 3L_2904588_SNP [dm6]	C	G	3.959e^-4	0.89	INTRON Shab
2L	13330253	2L_13330253_SNP [dm3] 2L_13330253_SNP [dm6]	A	C	3.962e^-4	0.89	INTRON CG43778
2R	17867499	2R_17867499_SNP [dm3] 2R_21979994_SNP [dm6]	A	G	3.965e^-4	0.89	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3R	23865143	3R_23865143_SNP [dm3] 3R_28039421_SNP [dm6]	A	T	3.982e^-4	0.89	INTRON CG34362
X	12785473	X_12785473_DEL [dm3] X_12891440_DEL [dm6]	AATA	A	3.991e^-4	0.89	INTRON Pde9
2L	7341999	2L_7341999_SNP [dm3] 2L_7341999_SNP [dm6]	G	A	3.994e^-4	0.89	INTRON Wnt6
3L	16643846	3L_16643846_SNP [dm3] 3L_16650746_SNP [dm6]	A	T	3.996e^-4	0.89	INTRON Baldspot
2R	18170172	2R_18170172_SNP [dm3] 2R_22282667_SNP [dm6]	A	T	4.002e^-4	0.89	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18455977	2R_18455977_SNP [dm3] 2R_22568472_SNP [dm6]	G	A	4.003e^-4	0.89	INTRON dnr1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12965533	3L_12965533_SNP [dm3] 3L_12972433_SNP [dm6]	A	G	4.016e^-4	0.89	UPSTREAM CG10749 & 1 other INTERGENIC
2R	10963284	2R_10963284_SNP [dm3] 2R_15075779_SNP [dm6]	C	G	4.019e^-4	0.89	INTERGENIC
3R	23821693	3R_23821693_SNP [dm3] 3R_27995971_SNP [dm6]	C	T	4.025e^-4	0.89	INTERGENIC
3L	6292465	3L_6292465_SNP [dm3] 3L_6299365_SNP [dm6]	G	T	4.028e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11436180	2L_11436180_SNP [dm3] 2L_11436180_SNP [dm6]	T	C	4.030e^-4	0.89	INTRON salm	TF binding site BDTNP1_TFBS_twi
2L	11226802	2L_11226802_SNP [dm3] 2L_11226802_SNP [dm6]	A	C	4.036e^-4	0.89	INTRON ab
2L	12699533	2L_12699533_SNP [dm3] 2L_12699533_SNP [dm6]	A	G	4.044e^-4	0.89	SYNONYMOUS_CODING CG17036 DOWNSTREAM PICK1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	4942058	2R_4942058_SNP [dm3] 2R_9054553_SNP [dm6]	T	A	4.047e^-4	0.89	INTRON CG13743
2L	10540208	2L_10540208_SNP [dm3] 2L_10540208_SNP [dm6]	A	T	4.047e^-4	0.89	INTERGENIC
2L	10540209	2L_10540209_DEL [dm3] 2L_10540209_DEL [dm6]	AA	A	4.047e^-4	0.89	INTERGENIC
X	7880728	X_7880728_SNP [dm3] X_7986695_SNP [dm6]	T	A	4.056e^-4	0.89	DOWNSTREAM sn INTERGENIC
2R	18269552	2R_18269552_SNP [dm3] 2R_22382047_SNP [dm6]	C	T	4.059e^-4	0.89	SYNONYMOUS_CODING wrapper	TF binding site mE1_TFBS_cad
3L	21401625	3L_21401625_SNP [dm3] 3L_21408525_SNP [dm6]	G	T	4.069e^-4	0.89	INTRON rgn
2L	1101242	2L_1101242_SNP [dm3] 2L_1101242_SNP [dm6]	C	G	4.073e^-4	0.89	INTRON CG4629
3L	13739181	3L_13739181_SNP [dm3] 3L_13746081_SNP [dm6]	C	G	4.081e^-4	0.89	INTRON bru-3
3R	9569492	3R_9569492_SNP [dm3] 3R_13743770_SNP [dm6]	A	G	4.090e^-4	0.89	INTRON CG34383	TF binding site mE1_TFBS_inv
X	15092798	X_15092798_SNP [dm3] X_15198765_SNP [dm6]	A	T	4.103e^-4	0.89	INTERGENIC
3L	12270530	3L_12270530_DEL [dm3] 3L_12277430_DEL [dm6]	GTACTTGG	G	4.106e^-4	0.89	UPSTREAM CG10426 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4576210	2R_4576210_SNP [dm3] 2R_8688705_SNP [dm6]	T	G	4.124e^-4	0.89	INTERGENIC
2L	8262112	2L_8262112_SNP [dm3] 2L_8262112_SNP [dm6]	G	A	4.126e^-4	0.89	INTRON Btk29A
2L	8262119	2L_8262119_SNP [dm3] 2L_8262119_SNP [dm6]	T	A	4.126e^-4	0.89	INTRON Btk29A
3R	10616362	3R_10616362_SNP [dm3] 3R_14790640_SNP [dm6]	T	C	4.126e^-4	0.89	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	3317625	2R_3317625_INS [dm3] 2R_7430120_INS [dm6]	TGC	AATAGAA	4.129e^-4	0.89	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
2L	10698212	2L_10698212_SNP [dm3] 2L_10698212_SNP [dm6]	A	C	4.130e^-4	0.89	UPSTREAM CG7300 DOWNSTREAM CR44181 INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	26087764	3R_26087764_SNP [dm3] 3R_30262042_SNP [dm6]	A	T	4.134e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	27020166	3R_27020166_SNP [dm3] 3R_31194444_SNP [dm6]	A	G	4.135e^-4	0.89	DOWNSTREAM bnk INTRON mesh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7958168	2R_7958168_SNP [dm3] 2R_12070663_SNP [dm6]	A	G	4.136e^-4	0.89	INTRON CG8888
2R	7403795	2R_7403795_SNP [dm3] 2R_11516290_SNP [dm6]	G	A	4.138e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	24643266	3R_24643266_SNP [dm3] 3R_28817544_SNP [dm6]	A	G	4.139e^-4	0.89	SYNONYMOUS_CODING CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4009167	3L_4009167_SNP [dm3] 3L_4009167_SNP [dm6]	A	G	4.149e^-4	0.89	INTERGENIC
2L	15432488	2L_15432488_SNP [dm3] 2L_15432488_SNP [dm6]	T	A	4.151e^-4	0.89	UPSTREAM CG4161 INTERGENIC
2L	10958619	2L_10958619_SNP [dm3] 2L_10958619_SNP [dm6]	T	G	4.151e^-4	0.89	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
2L	10698809	2L_10698809_SNP [dm3] 2L_10698809_SNP [dm6]	G	A	4.158e^-4	0.89	UPSTREAM CG7300 DOWNSTREAM CR44181 & 1 other INTERGENIC
X	17342149	X_17342149_SNP [dm3] X_17448116_SNP [dm6]	C	T	4.170e^-4	0.89	SYNONYMOUS_CODING p-cup DOWNSTREAM CG8568	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8792744	3L_8792744_SNP [dm3] 3L_8799644_SNP [dm6]	A	T	4.175e^-4	0.89	DOWNSTREAM Fhos INTRON CG13310
3L	8792801	3L_8792801_SNP [dm3] 3L_8799701_SNP [dm6]	G	T	4.175e^-4	0.89	DOWNSTREAM Fhos INTRON CG13310
3R	15977360	3R_15977360_SNP [dm3] 3R_20151638_SNP [dm6]	T	C	4.177e^-4	0.89	INTERGENIC
2R	8763416	2R_8763416_SNP [dm3] 2R_12875911_SNP [dm6]	G	A	4.181e^-4	0.89	SYNONYMOUS_CODING CG3814 UPSTREAM CG3790 DOWNSTREAM CR43469 EXON CR43468
2R	14648304	2R_14648304_SNP [dm3] 2R_18760799_SNP [dm6]	A	C	4.190e^-4	0.89	UPSTREAM Jabba & 1 other INTRON Jabba
3R	13872527	3R_13872527_SNP [dm3] 3R_18046805_SNP [dm6]	G	A	4.195e^-4	0.89	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6536068	X_6536068_SNP [dm3] X_6642035_SNP [dm6]	G	A	4.201e^-4	0.89	INTRON pigs
3R	5314437	3R_5314437_SNP [dm3] 3R_9488715_SNP [dm6]	C	T	4.202e^-4	0.89	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
3L	1436229	3L_1436229_SNP [dm3] 3L_1436229_SNP [dm6]	C	T	4.205e^-4	0.89	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15054256	2L_15054256_SNP [dm3] 2L_15054256_SNP [dm6]	T	G	4.206e^-4	0.89	INTRON ck	regulatory region REDfly_CRMs
2L	16123007	2L_16123007_SNP [dm3] 2L_16123007_SNP [dm6]	A	G	4.212e^-4	0.89	INTERGENIC
2R	1879241	2R_1879241_SNP [dm3] 2R_5991736_SNP [dm6]	T	C	4.215e^-4	0.89	INTRON Src42A
2L	1951608	2L_1951608_SNP [dm3] 2L_1951608_SNP [dm6]	C	T	4.217e^-4	0.89	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16194904	3R_16194904_SNP [dm3] 3R_20369182_SNP [dm6]	C	G	4.221e^-4	0.89	INTERGENIC
3R	14982005	3R_14982005_SNP [dm3] 3R_19156283_SNP [dm6]	C	T	4.222e^-4	0.89	SYNONYMOUS_CODING CG11779 UPSTREAM nos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	5443070	3R_5443070_SNP [dm3] 3R_9617348_SNP [dm6]	A	T	4.223e^-4	0.89	INTRON CG8312
2R	11348278	2R_11348278_SNP [dm3] 2R_15460773_SNP [dm6]	C	T	4.225e^-4	0.89	INTRON CG43729
2L	13049461	2L_13049461_SNP [dm3] 2L_13049461_SNP [dm6]	T	C	4.230e^-4	0.89	INTRON CG9932
2R	1755878	2R_1755878_SNP [dm3] 2R_5868373_SNP [dm6]	T	C	4.242e^-4	0.89	INTERGENIC
3L	10387734	3L_10387734_DEL [dm3] 3L_10394634_DEL [dm6]	AA	A	4.251e^-4	0.89	INTERGENIC
2L	11007851	2L_11007851_SNP [dm3] 2L_11007851_SNP [dm6]	A	C	4.257e^-4	0.89	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13872518	3R_13872518_SNP [dm3] 3R_18046796_SNP [dm6]	A	G	4.259e^-4	0.89	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4994181	3L_4994181_SNP [dm3] 3L_4994181_SNP [dm6]	G	A	4.265e^-4	0.89	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15360661	3R_15360661_SNP [dm3] 3R_19534939_SNP [dm6]	C	T	4.276e^-4	0.89	INTRON Dys
2L	16437207	2L_16437207_SNP [dm3] 2L_16437207_SNP [dm6]	C	T	4.277e^-4	0.89	INTRON CG5888
3L	14407840	3L_14407840_DEL [dm3] 3L_14414740_DEL [dm6]	AA	A	4.285e^-4	0.89	INTRON bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11349902	2R_11349902_INS [dm3] 2R_15462397_INS [dm6]	GT	CAGGATGCC	4.286e^-4	0.89	INTRON CG43729
3L	9404883	3L_9404883_SNP [dm3] 3L_9411783_SNP [dm6]	G	C	4.289e^-4	0.89	UPSTREAM CG4022 INTRON CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14514676	3L_14514676_SNP [dm3] 3L_14521576_SNP [dm6]	G	A	4.290e^-4	0.89	NON_SYNONYMOUS_CODING CG4613 INTRON bbg
3L	5909594	3L_5909594_SNP [dm3] 3L_5916494_SNP [dm6]	C	T	4.298e^-4	0.89	INTRON CG13288
2R	8444448	2R_8444448_SNP [dm3] 2R_12556943_SNP [dm6]	A	G	4.328e^-4	0.89	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5520344	2L_5520344_SNP [dm3] 2L_5520344_SNP [dm6]	C	A	4.331e^-4	0.89	UTR_5_PRIME cl UPSTREAM CG7382 DOWNSTREAM CG7371	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	550174	2L_550174_SNP [dm3] 2L_550174_SNP [dm6]	T	C	4.333e^-4	0.89	UPSTREAM Ets21C INTRON Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3059376	X_3059376_SNP [dm3] X_3165343_SNP [dm6]	T	C	4.334e^-4	0.89	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2616601	3L_2616601_SNP [dm3] 3L_2616601_SNP [dm6]	A	G	4.347e^-4	0.89	INTRON Pxn
3R	6380237	3R_6380237_INS [dm3] 3R_10554515_INS [dm6]	C	CGAGC	4.356e^-4	0.89	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4073263	2R_4073263_SNP [dm3] 2R_8185758_SNP [dm6]	G	A	4.361e^-4	0.89	INTRON LRP1
3R	26813005	3R_26813005_SNP [dm3] 3R_30987283_SNP [dm6]	C	T	4.365e^-4	0.89	INTRON 5-HT7	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	16049607	2L_16049607_SNP [dm3] 2L_16049607_SNP [dm6]	T	G	4.366e^-4	0.89	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6245394	X_6245394_SNP [dm3] X_6351361_SNP [dm6]	G	C	4.368e^-4	0.89	UPSTREAM CG3446 & 1 other INTRON kdn
X	20133657	X_20133657_INS [dm3] X_20262631_INS [dm6]	A	ATTAGTACACAATA...	4.379e^-4	0.89	INTERGENIC
3R	24643215	3R_24643215_SNP [dm3] 3R_28817493_SNP [dm6]	G	A	4.390e^-4	0.89	SYNONYMOUS_CODING CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4687601	3L_4687601_SNP [dm3] 3L_4687601_SNP [dm6]	A	G	4.396e^-4	0.89	UTR_3_PRIME CG7514 UPSTREAM axo
3R	8372226	3R_8372226_DEL [dm3] 3R_12546504_DEL [dm6]	GTGCGAAACGAAGTTTAACT...	G	4.403e^-4	0.89	INTRON Octbeta3R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9397961	3L_9397961_SNP [dm3] 3L_9404861_SNP [dm6]	A	C	4.403e^-4	0.89	UTR_5_PRIME Cpr67B
2L	15991325	2L_15991325_SNP [dm3] 2L_15991325_SNP [dm6]	A	T	4.416e^-4	0.89	INTERGENIC
2L	7330316	2L_7330316_SNP [dm3] 2L_7330316_SNP [dm6]	T	G	4.418e^-4	0.89	UPSTREAM CR45304 INTERGENIC
2R	1837772	2R_1837772_SNP [dm3] 2R_5950267_SNP [dm6]	C	G	4.441e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9491502	2L_9491502_SNP [dm3] 2L_9491502_SNP [dm6]	A	G	4.442e^-4	0.89	UTR_3_PRIME Gdi DOWNSTREAM Gdi
2R	19025101	2R_19025101_SNP [dm3] 2R_23137578_SNP [dm6]	A	G	4.445e^-4	0.89	INTERGENIC
3L	11380998	3L_11380998_SNP [dm3] 3L_11387898_SNP [dm6]	A	G	4.450e^-4	0.89	INTERGENIC
3L	13845635	3L_13845635_SNP [dm3] 3L_13852535_SNP [dm6]	C	T	4.454e^-4	0.89	INTRON Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14646656	2R_14646656_SNP [dm3] 2R_18759151_SNP [dm6]	T	G	4.458e^-4	0.89	SYNONYMOUS_CODING Jabba
3R	21904971	3R_21904971_DEL [dm3] 3R_26079249_DEL [dm6]	TGG	T	4.468e^-4	0.89	INTRON dys
X	22111712	X_22111712_SNP [dm3] X_22709876_SNP [dm6]	A	T	4.469e^-4	0.89	INTRON CR44997	transposable element FlyBase
2R	14648200	2R_14648200_SNP [dm3] 2R_18760695_SNP [dm6]	A	G	4.470e^-4	0.89	UPSTREAM Jabba INTRON Jabba
2R	9747768	2R_9747768_SNP [dm3] 2R_13860263_SNP [dm6]	A	C	4.473e^-4	0.89	SYNONYMOUS_CODING Uba3 DOWNSTREAM CG16935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3055590	X_3055590_SNP [dm3] X_3161557_SNP [dm6]	T	A	4.473e^-4	0.89	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17208687	2R_17208687_SNP [dm3] 2R_21321182_SNP [dm6]	A	T	4.473e^-4	0.89	NON_SYNONYMOUS_CODING CG30394
3L	10742496	3L_10742496_SNP [dm3] 3L_10749396_SNP [dm6]	G	A	4.477e^-4	0.89	INTERGENIC
2L	3321726	2L_3321726_SNP [dm3] 2L_3321726_SNP [dm6]	C	T	4.482e^-4	0.89	SYNONYMOUS_CODING CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6942165	3L_6942165_SNP [dm3] 3L_6949065_SNP [dm6]	G	A	4.485e^-4	0.89	UTR_3_PRIME tow DOWNSTREAM CG10077 & 1 other
3R	15392261	3R_15392261_SNP [dm3] 3R_19566539_SNP [dm6]	C	A	4.488e^-4	0.89	INTRON Dys
X	14191928	X_14191928_SNP [dm3] X_14297895_SNP [dm6]	T	C	4.492e^-4	0.89	INTERGENIC
3L	14135090	3L_14135090_INS [dm3] 3L_14141990_INS [dm6]	G	GG	4.492e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs
3R	20116292	3R_20116292_SNP [dm3] 3R_24290570_SNP [dm6]	A	G	4.496e^-4	0.89	NON_SYNONYMOUS_CODING CG6364 UPSTREAM CG34290	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	17793246	3R_17793246_SNP [dm3] 3R_21967524_SNP [dm6]	T	C	4.504e^-4	0.89	INTRON Eip93F
X	22106502	X_22106502_SNP [dm3] X_22704666_SNP [dm6]	A	T	4.513e^-4	0.89	INTRON CR44997	transposable element FlyBase
3L	13193979	3L_13193979_SNP [dm3] 3L_13200879_SNP [dm6]	G	C	4.513e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	16964747	3L_16964747_SNP [dm3] 3L_16971647_SNP [dm6]	G	A	4.516e^-4	0.89	INTRON Exn
2R	18148741	2R_18148741_SNP [dm3] 2R_22261236_SNP [dm6]	C	G	4.518e^-4	0.89	INTRON dve
3R	19754410	3R_19754410_SNP [dm3] 3R_23928688_SNP [dm6]	G	A	4.530e^-4	0.89	SYNONYMOUS_CODING CG43999 UTR_5_PRIME CG43998 UPSTREAM CG31142 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	3362801	X_3362801_SNP [dm3] X_3468768_SNP [dm6]	G	A	4.538e^-4	0.89	INTRON CR44999 & 1 other
X	15087804	X_15087804_SNP [dm3] X_15193771_SNP [dm6]	C	A	4.546e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12615634	3L_12615634_SNP [dm3] 3L_12622534_SNP [dm6]	G	T	4.556e^-4	0.89	DOWNSTREAM caup INTERGENIC
3L	8915198	3L_8915198_SNP [dm3] 3L_8922098_SNP [dm6]	T	A	4.558e^-4	0.89	INTRON Tsp66E
2R	14916193	2R_14916193_SNP [dm3] 2R_19028688_SNP [dm6]	C	T	4.570e^-4	0.89	SYNONYMOUS_CODING 5-HT1B
3L	4791445	3L_4791445_SNP [dm3] 3L_4791445_SNP [dm6]	T	A	4.572e^-4	0.89	NON_SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
X	3059601	X_3059601_SNP [dm3] X_3165568_SNP [dm6]	C	T	4.588e^-4	0.89	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18704451	3R_18704451_SNP [dm3] 3R_22878729_SNP [dm6]	C	T	4.596e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2165962	X_2165962_SNP [dm3] X_2271929_SNP [dm6]	G	A	4.597e^-4	0.89	SYNONYMOUS_CODING CG2918	TF binding site mE1_TFBS_sens
3L	16544179	3L_16544179_SNP [dm3] 3L_16551079_SNP [dm6]	T	A	4.600e^-4	0.89	INTERGENIC
2R	7571222	2R_7571222_SNP [dm3] 2R_11683717_SNP [dm6]	C	T	4.605e^-4	0.89	DOWNSTREAM CG13196 INTRON Buffy
2R	7882180	2R_7882180_DEL [dm3] 2R_11994675_DEL [dm6]	GCGTTTCCGACCATAT...	A	4.606e^-4	0.89	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319	transposable element FlyBase
3L	9326436	3L_9326436_SNP [dm3] 3L_9333336_SNP [dm6]	C	T	4.608e^-4	0.89	UPSTREAM PGRP-LA INTERGENIC
2R	7874262	2R_7874262_SNP [dm3] 2R_11986757_SNP [dm6]	G	C	4.618e^-4	0.89	UTR_3_PRIME rho-7 & 1 other	TF binding site mE1_TFBS_sens
2R	16184848	2R_16184848_SNP [dm3] 2R_20297343_SNP [dm6]	C	A	4.630e^-4	0.89	INTERGENIC
3L	9301157	3L_9301157_SNP [dm3] 3L_9308057_SNP [dm6]	T	A	4.634e^-4	0.89	INTERGENIC
X	3184863	X_3184863_SNP [dm3] X_3290830_SNP [dm6]	G	A	4.647e^-4	0.89	UPSTREAM dnc INTRON dnc
X	20484532	X_20484532_SNP [dm3] X_20613505_SNP [dm6]	C	G	4.649e^-4	0.89	INTRON RunxA
2L	13346455	2L_13346455_SNP [dm3] 2L_13346455_SNP [dm6]	T	A	4.652e^-4	0.89	INTERGENIC
2R	5273552	2R_5273552_SNP [dm3] 2R_9386047_SNP [dm6]	G	T	4.655e^-4	0.89	INTRON CG13954
2L	7995696	2L_7995696_SNP [dm3] 2L_7995696_SNP [dm6]	T	A	4.661e^-4	0.89	SPLICE_SITE_REGION CG7227 INTRON CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11549969	3L_11549969_SNP [dm3] 3L_11556869_SNP [dm6]	T	C	4.671e^-4	0.89	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	16596659	X_16596659_SNP [dm3] X_16702626_SNP [dm6]	C	T	4.675e^-4	0.89	UPSTREAM spheroide DOWNSTREAM CG9673 INTRON CG4678
2L	12928034	2L_12928034_SNP [dm3] 2L_12928034_SNP [dm6]	T	C	4.680e^-4	0.89	SYNONYMOUS_CODING ACXE
3L	13271722	3L_13271722_SNP [dm3] 3L_13278622_SNP [dm6]	A	G	4.688e^-4	0.89	UTR_3_PRIME caps
3L	13858550	3L_13858550_SNP [dm3] 3L_13865450_SNP [dm6]	G	A	4.695e^-4	0.89	INTRON CG8745	TF binding site mE1_TFBS_inv
3L	4018715	3L_4018715_SNP [dm3] 3L_4018715_SNP [dm6]	A	T	4.700e^-4	0.89	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7338464	2L_7338464_SNP [dm3] 2L_7338464_SNP [dm6]	G	A	4.718e^-4	0.89	INTRON Wnt6
X	4095262	X_4095262_SNP [dm3] X_4201229_SNP [dm6]	T	C	4.721e^-4	0.89	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17095443	3R_17095443_SNP [dm3] 3R_21269721_SNP [dm6]	A	G	4.723e^-4	0.89	UPSTREAM Rab1 & 1 other INTRON AP-2sigma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5249104	2R_5249104_SNP [dm3] 2R_9361599_SNP [dm6]	A	T	4.729e^-4	0.89	DOWNSTREAM CG12158 INTRON CG13954
3L	16683005	3L_16683005_SNP [dm3] 3L_16689905_SNP [dm6]	G	T	4.736e^-4	0.89	INTRON Lasp & 2 others EXON CR45179
3R	12417659	3R_12417659_SNP [dm3] 3R_16591937_SNP [dm6]	G	A	4.744e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2R	14818751	2R_14818751_SNP [dm3] 2R_18931246_SNP [dm6]	G	A	4.750e^-4	0.89	INTRON sano
3L	9397956	3L_9397956_SNP [dm3] 3L_9404856_SNP [dm6]	C	T	4.753e^-4	0.89	UTR_5_PRIME Cpr67B
2R	3531866	2R_3531866_SNP [dm3] 2R_7644361_SNP [dm6]	T	G	4.777e^-4	0.89	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	13853337	3L_13853337_SNP [dm3] 3L_13860237_SNP [dm6]	A	T	4.778e^-4	0.89	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	10765018	X_10765018_SNP [dm3] X_10870985_SNP [dm6]	G	A	4.781e^-4	0.89	SYNONYMOUS_CODING CG1637 DOWNSTREAM CG2157	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16831055	2R_16831055_SNP [dm3] 2R_20943550_SNP [dm6]	G	A	4.789e^-4	0.89	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3085820	3R_3085820_SNP [dm3] 3R_7260098_SNP [dm6]	A	G	4.796e^-4	0.89	INTRON Gld
3L	3975810	3L_3975810_SNP [dm3] 3L_3975810_SNP [dm6]	T	A	4.799e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	13851050	X_13851050_SNP [dm3] X_13957017_SNP [dm6]	A	T	4.801e^-4	0.89	DOWNSTREAM CG11068 INTRON mamo
3R	25301056	3R_25301056_SNP [dm3] 3R_29475334_SNP [dm6]	C	T	4.802e^-4	0.89	INTRON Ptp99A
3L	2726583	3L_2726583_SNP [dm3] 3L_2726583_SNP [dm6]	C	A	4.831e^-4	0.89	INTRON Mrtf
2R	19025075	2R_19025075_SNP [dm3] 2R_23137552_SNP [dm6]	G	A	4.834e^-4	0.89	INTERGENIC
2R	11350522	2R_11350522_SNP [dm3] 2R_15463017_SNP [dm6]	G	T	4.837e^-4	0.89	INTRON CG43729
3R	23987136	3R_23987136_SNP [dm3] 3R_28161414_SNP [dm6]	A	C	4.845e^-4	0.89	INTRON CG34354
3L	12264067	3L_12264067_SNP [dm3] 3L_12270967_SNP [dm6]	C	A	4.847e^-4	0.89	SYNONYMOUS_CODING Pbgs DOWNSTREAM CG4300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6942945	3L_6942945_SNP [dm3] 3L_6949845_SNP [dm6]	G	T	4.847e^-4	0.89	UTR_3_PRIME CG10077 DOWNSTREAM tow
2L	18073235	2L_18073235_DEL [dm3] 2L_18073235_DEL [dm6]	TCTGGTGGCCATCAGTAT...	T	4.854e^-4	0.89	INTERGENIC
2L	12881827	2L_12881827_SNP [dm3] 2L_12881827_SNP [dm6]	A	C	4.855e^-4	0.89	INTERGENIC
2L	9722279	2L_9722279_SNP [dm3] 2L_9722279_SNP [dm6]	A	C	4.866e^-4	0.89	INTRON Nckx30C
3L	13738556	3L_13738556_SNP [dm3] 3L_13745456_SNP [dm6]	G	A	4.867e^-4	0.89	INTRON bru-3
3L	9015894	3L_9015894_SNP [dm3] 3L_9022794_SNP [dm6]	T	G	4.868e^-4	0.89	INTERGENIC
3R	22052913	3R_22052913_SNP [dm3] 3R_26227191_SNP [dm6]	A	T	4.871e^-4	0.89	INTERGENIC
3L	9326473	3L_9326473_SNP [dm3] 3L_9333373_SNP [dm6]	G	A	4.872e^-4	0.89	UPSTREAM PGRP-LA INTERGENIC
2R	16008968	2R_16008968_SNP [dm3] 2R_20121463_SNP [dm6]	A	T	4.887e^-4	0.89	INTERGENIC
2L	16543680	2L_16543680_SNP [dm3] 2L_16543680_SNP [dm6]	G	A	4.895e^-4	0.89	DOWNSTREAM CG31816 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	17344161	X_17344161_SNP [dm3] X_17450128_SNP [dm6]	C	A	4.897e^-4	0.89	NON_SYNONYMOUS_CODING CG8568
2R	18170813	2R_18170813_SNP [dm3] 2R_22283308_SNP [dm6]	A	G	4.897e^-4	0.89	INTRON dve	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15108665	3L_15108665_SNP [dm3] 3L_15115565_SNP [dm6]	T	A	4.898e^-4	0.89	SYNONYMOUS_CODING CG13458
2R	18916579	2R_18916579_SNP [dm3] 2R_23029056_SNP [dm6]	T	C	4.902e^-4	0.89	INTRON twi & 1 other
X	7880705	X_7880705_INS [dm3] X_7986672_INS [dm6]	T	TA	4.911e^-4	0.89	DOWNSTREAM sn INTERGENIC
2L	12720515	2L_12720515_SNP [dm3] 2L_12720515_SNP [dm6]	C	T	4.913e^-4	0.89	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_cad
3L	9946094	3L_9946094_SNP [dm3] 3L_9952994_SNP [dm6]	G	A	4.920e^-4	0.89	INTRON CG34356
3L	4018694	3L_4018694_SNP [dm3] 3L_4018694_SNP [dm6]	A	T	4.921e^-4	0.89	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12502883	2R_12502883_SNP [dm3] 2R_16615378_SNP [dm6]	T	C	4.922e^-4	0.89	INTRON CG5065
2L	11868673	2L_11868673_SNP [dm3] 2L_11868673_SNP [dm6]	T	A	4.930e^-4	0.89	INTRON Pde1c
3L	7403778	3L_7403778_SNP [dm3] 3L_7410678_SNP [dm6]	G	A	4.942e^-4	0.89	UPSTREAM CR44525 INTERGENIC
2R	7507086	2R_7507086_DEL [dm3] 2R_11619581_DEL [dm6]	TT	T	4.943e^-4	0.89	UTR_3_PRIME CG9005 UPSTREAM Egm DOWNSTREAM CG9005	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	23865252	3R_23865252_SNP [dm3] 3R_28039530_SNP [dm6]	T	A	4.949e^-4	0.89	INTRON CG34362
3L	18007236	3L_18007236_SNP [dm3] 3L_18014136_SNP [dm6]	T	C	4.951e^-4	0.89	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23780822	3R_23780822_SNP [dm3] 3R_27955100_SNP [dm6]	A	G	4.951e^-4	0.89	NON_SYNONYMOUS_CODING CG5527 UPSTREAM CG4951	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15975948	2L_15975948_SNP [dm3] 2L_15975948_SNP [dm6]	C	A	4.953e^-4	0.89	INTERGENIC
2R	8736316	2R_8736316_SNP [dm3] 2R_12848811_SNP [dm6]	T	A	4.954e^-4	0.89	UPSTREAM antr DOWNSTREAM CG17574 INTRON CG30486 EXON CR45468
2R	8736320	2R_8736320_SNP [dm3] 2R_12848815_SNP [dm6]	G	A	4.954e^-4	0.89	UPSTREAM antr DOWNSTREAM CG17574 INTRON CG30486 EXON CR45468
3L	12287105	3L_12287105_SNP [dm3] 3L_12294005_SNP [dm6]	G	C	4.960e^-4	0.89	INTRON CG4328
X	13340112	X_13340112_SNP [dm3] X_13446079_SNP [dm6]	A	G	4.962e^-4	0.89	UTR_5_PRIME Neto
2R	15052461	2R_15052461_DEL [dm3] 2R_19164956_DEL [dm6]	TT	T	4.962e^-4	0.89	INTRON CG10737	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13833052	2R_13833052_SNP [dm3] 2R_17945547_SNP [dm6]	G	C	4.974e^-4	0.89	INTERGENIC
2L	11251347	2L_11251347_SNP [dm3] 2L_11251347_SNP [dm6]	A	C	4.974e^-4	0.89	INTRON ab	TF binding site BDTNP1_TFBS_twi
X	7880710	X_7880710_SNP [dm3] X_7986677_SNP [dm6]	A	T	4.980e^-4	0.89	DOWNSTREAM sn INTERGENIC
2R	20177022	2R_20177022_SNP [dm3] 2R_24289499_SNP [dm6]	A	G	4.982e^-4	0.89	SYNONYMOUS_CODING nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21309631	3R_21309631_SNP [dm3] 3R_25483909_SNP [dm6]	T	C	4.987e^-4	0.89	SYNONYMOUS_CODING CG5116 UTR_3_PRIME CG42488	TF binding site mE1_TFBS_cad mE1_TFBS_ttk
3L	13734567	3L_13734567_SNP [dm3] 3L_13741467_SNP [dm6]	G	T	4.987e^-4	0.89	INTRON bru-3
3R	5443071	3R_5443071_SNP [dm3] 3R_9617349_SNP [dm6]	T	A	4.990e^-4	0.89	INTRON CG8312
3L	895929	3L_895929_SNP [dm3] 3L_895929_SNP [dm6]	A	G	4.991e^-4	0.89	UPSTREAM CG34056 DOWNSTREAM CG32479 INTERGENIC
3R	15402858	3R_15402858_SNP [dm3] 3R_19577136_SNP [dm6]	C	T	5.002e^-4	0.89	INTRON Dys

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.403e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0716574
In_3R_Mo	0.0007375

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1904 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	4087652	X_4087652_DEL [dm3] X_4193619_DEL [dm6]	AA	A	1.299e^-6	0.857	INTRON Fas2	regulatory region REDfly_CRMs
2L	12255028	2L_12255028_SNP [dm3] 2L_12255028_SNP [dm6]	C	T	1.331e^-6	0.857	INTRON aret
X	17344161	X_17344161_SNP [dm3] X_17450128_SNP [dm6]	C	A	2.775e^-6	0.857	NON_SYNONYMOUS_CODING CG8568
2R	1819011	2R_1819011_SNP [dm3] 2R_5931506_SNP [dm6]	A	G	3.289e^-6	0.857	DOWNSTREAM CG43366 INTERGENIC
3R	10775867	3R_10775867_SNP [dm3] 3R_14950145_SNP [dm6]	G	C	3.778e^-6	0.857	INTERGENIC
2R	6831054	2R_6831054_SNP [dm3] 2R_10943549_SNP [dm6]	A	G	4.032e^-6	0.857	INTERGENIC
2R	11295264	2R_11295264_SNP [dm3] 2R_15407759_SNP [dm6]	A	C	4.899e^-6	0.857	INTRON CG43729
2R	10609178	2R_10609178_INS [dm3] 2R_14721673_INS [dm6]	T	TGGG	5.125e^-6	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20493467	3R_20493467_SNP [dm3] 3R_24667745_SNP [dm6]	G	C	5.657e^-6	0.857	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2L	9242325	2L_9242325_SNP [dm3] 2L_9242325_SNP [dm6]	G	A	6.380e^-6	0.857	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_chinmo
3R	21908502	3R_21908502_SNP [dm3] 3R_26082780_SNP [dm6]	C	T	6.712e^-6	0.857	INTRON dys	TF binding site mE1_TFBS_cad
3R	17016618	3R_17016618_SNP [dm3] 3R_21190896_SNP [dm6]	A	G	6.771e^-6	0.857	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	1615841	2R_1615841_SNP [dm3] 2R_5728336_SNP [dm6]	A	T	7.070e^-6	0.857	UPSTREAM ap INTERGENIC
2R	11216889	2R_11216889_SNP [dm3] 2R_15329384_SNP [dm6]	T	C	8.092e^-6	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10418739	X_10418739_SNP [dm3] X_10524706_SNP [dm6]	G	C	8.411e^-6	0.857	INTRON spri
2R	1818723	2R_1818723_SNP [dm3] 2R_5931218_SNP [dm6]	A	G	8.815e^-6	0.857	UTR_3_PRIME CG43366
X	17342149	X_17342149_SNP [dm3] X_17448116_SNP [dm6]	C	T	1.013e^-5	0.857	SYNONYMOUS_CODING p-cup DOWNSTREAM CG8568	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23487313	3R_23487313_SNP [dm3] 3R_27661591_SNP [dm6]	T	C	1.024e^-5	0.857	UPSTREAM unc80 INTERGENIC
2R	1615804	2R_1615804_SNP [dm3] 2R_5728299_SNP [dm6]	A	T	1.057e^-5	0.857	UPSTREAM ap INTERGENIC
2L	12255057	2L_12255057_SNP [dm3] 2L_12255057_SNP [dm6]	C	T	1.082e^-5	0.857	INTRON aret
3R	17016866	3R_17016866_SNP [dm3] 3R_21191144_SNP [dm6]	C	T	1.171e^-5	0.857	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1467401	3L_1467401_SNP [dm3] 3L_1467401_SNP [dm6]	C	A	1.175e^-5	0.857	UTR_3_PRIME rho INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	2948166	3L_2948166_SNP [dm3] 3L_2948166_SNP [dm6]	A	G	1.195e^-5	0.857	INTRON Shab
3R	21884345	3R_21884345_SNP [dm3] 3R_26058623_SNP [dm6]	C	T	1.211e^-5	0.857	SYNONYMOUS_CODING RpL34a UPSTREAM CG14550 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	12255056	2L_12255056_SNP [dm3] 2L_12255056_SNP [dm6]	C	T	1.269e^-5	0.857	INTRON aret
2L	4454065	2L_4454065_SNP [dm3] 2L_4454065_SNP [dm6]	A	G	1.297e^-5	0.857	SYNONYMOUS_CODING CG15440 UPSTREAM CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20564769	2L_20564769_SNP [dm3] 2L_20564769_SNP [dm6]	A	T	1.343e^-5	0.857	INTRON CR45347
3R	20493471	3R_20493471_SNP [dm3] 3R_24667749_SNP [dm6]	C	A	1.355e^-5	0.857	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2L	12255046	2L_12255046_SNP [dm3] 2L_12255046_SNP [dm6]	T	A	1.367e^-5	0.857	INTRON aret
2R	1924886	2R_1924886_SNP [dm3] 2R_6037381_SNP [dm6]	G	A	1.375e^-5	0.857	SYNONYMOUS_CODING CG14591 UPSTREAM SCAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16107372	2L_16107372_SNP [dm3] 2L_16107372_SNP [dm6]	G	A	1.481e^-5	0.857	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3482406	X_3482406_SNP [dm3] X_3588373_SNP [dm6]	G	A	1.505e^-5	0.857	INTRON AstA-R1
3L	18061493	3L_18061493_SNP [dm3] 3L_18068393_SNP [dm6]	G	C	1.523e^-5	0.857	DOWNSTREAM CG44006 INTERGENIC
2L	14048925	2L_14048925_SNP [dm3] 2L_14048925_SNP [dm6]	G	C	1.553e^-5	0.857	DOWNSTREAM NimC4 INTRON nAChRalpha5	TF binding site mE1_TFBS_inv
2L	12255048	2L_12255048_SNP [dm3] 2L_12255048_SNP [dm6]	T	C	1.646e^-5	0.882	INTRON aret
2R	14775571	2R_14775571_SNP [dm3] 2R_18888066_SNP [dm6]	C	T	1.725e^-5	0.898	INTRON sano
3R	2216618	3R_2216618_SNP [dm3] 3R_6390896_SNP [dm6]	G	A	1.820e^-5	0.923	SYNONYMOUS_CODING Dmtn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22109108	3R_22109108_SNP [dm3] 3R_26283386_SNP [dm6]	A	G	1.901e^-5	0.938	INTERGENIC
3L	6846539	3L_6846539_SNP [dm3] 3L_6853439_SNP [dm6]	C	T	2.053e^-5	0.951	INTERGENIC
X	6361039	X_6361039_SNP [dm3] X_6467006_SNP [dm6]	C	A	2.062e^-5	0.951	UTR_3_PRIME CG42340	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	16158250	X_16158250_SNP [dm3] X_16264217_SNP [dm6]	T	A	2.179e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3483521	X_3483521_SNP [dm3] X_3589488_SNP [dm6]	G	A	2.218e^-5	0.951	INTRON AstA-R1
X	3483222	X_3483222_SNP [dm3] X_3589189_SNP [dm6]	T	A	2.252e^-5	0.951	INTRON AstA-R1
2R	10609184	2R_10609184_SNP [dm3] 2R_14721679_SNP [dm6]	A	T	2.332e^-5	0.951	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2566942	3L_2566942_SNP [dm3] 3L_2566942_SNP [dm6]	G	A	2.568e^-5	0.951	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21535740	3R_21535740_SNP [dm3] 3R_25710018_SNP [dm6]	G	A	2.655e^-5	0.951	SPLICE_SITE_REGION LpR2 INTRON LpR2
2L	12255051	2L_12255051_DEL [dm3] 2L_12255051_DEL [dm6]	AA	A	2.725e^-5	0.951	INTRON aret
2L	4769759	2L_4769759_SNP [dm3] 2L_4769759_SNP [dm6]	T	G	2.971e^-5	0.951	INTRON CG15630
2L	19139466	2L_19139466_SNP [dm3] 2L_19139466_SNP [dm6]	C	A	3.042e^-5	0.951	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3737021	2L_3737021_INS [dm3] 2L_3737021_INS [dm6]	G	AA	3.053e^-5	0.951	INTRON CG10019
2R	15058922	2R_15058922_SNP [dm3] 2R_19171417_SNP [dm6]	A	C	3.113e^-5	0.951	INTRON CG10737
2R	6158542	2R_6158542_SNP [dm3] 2R_10271037_SNP [dm6]	G	T	3.113e^-5	0.951	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv
X	3867592	X_3867592_DEL [dm3] X_3973559_DEL [dm6]	TT	T	3.213e^-5	0.951	INTERGENIC
2R	1816369	2R_1816369_SNP [dm3] 2R_5928864_SNP [dm6]	A	G	3.321e^-5	0.951	SYNONYMOUS_CODING CG43366
2L	7471057	2L_7471057_SNP [dm3] 2L_7471057_SNP [dm6]	C	A	3.344e^-5	0.951	UPSTREAM CG6055 INTRON CG6055
3R	22108904	3R_22108904_SNP [dm3] 3R_26283182_SNP [dm6]	A	G	3.360e^-5	0.951	INTERGENIC
3R	20493485	3R_20493485_SNP [dm3] 3R_24667763_SNP [dm6]	T	A	3.381e^-5	0.951	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
3R	23487495	3R_23487495_SNP [dm3] 3R_27661773_SNP [dm6]	A	T	3.453e^-5	0.951	UPSTREAM unc80 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14053656	2L_14053656_SNP [dm3] 2L_14053656_SNP [dm6]	C	T	3.475e^-5	0.951	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
3L	14523305	3L_14523305_INS [dm3] 3L_14530205_INS [dm6]	T	TTTAGGAAAATGTT...	3.606e^-5	0.951	INTRON bbg
2R	14816718	2R_14816718_SNP [dm3] 2R_18929213_SNP [dm6]	A	T	3.645e^-5	0.951	INTRON sano
3R	25146940	3R_25146940_SNP [dm3] 3R_29321218_SNP [dm6]	T	A	3.754e^-5	0.951	INTERGENIC
2L	20564796	2L_20564796_SNP [dm3] 2L_20564796_SNP [dm6]	A	C	3.777e^-5	0.951	INTRON CR45347
3L	9355696	3L_9355696_SNP [dm3] 3L_9362596_SNP [dm6]	G	A	3.795e^-5	0.951	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
2R	14575305	2R_14575305_SNP [dm3] 2R_18687800_SNP [dm6]	T	C	3.802e^-5	0.951	UPSTREAM Sik3 INTRON CG42855	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26723575	3R_26723575_SNP [dm3] 3R_30897853_SNP [dm6]	T	C	3.802e^-5	0.951	INTRON Cyp4c3
2R	10637869	2R_10637869_SNP [dm3] 2R_14750364_SNP [dm6]	A	T	3.834e^-5	0.951	UTR_3_PRIME Rpn6 DOWNSTREAM AttB
2L	4155310	2L_4155310_SNP [dm3] 2L_4155310_SNP [dm6]	A	G	3.855e^-5	0.951	INTERGENIC
X	5600071	X_5600071_SNP [dm3] X_5706038_SNP [dm6]	T	C	3.864e^-5	0.951	INTRON CG4096
X	4709039	X_4709039_SNP [dm3] X_4815006_SNP [dm6]	G	A	3.911e^-5	0.951	INTERGENIC
3R	25147701	3R_25147701_SNP [dm3] 3R_29321979_SNP [dm6]	A	C	3.940e^-5	0.951	INTERGENIC
X	6409763	X_6409763_SNP [dm3] X_6515730_SNP [dm6]	T	C	3.955e^-5	0.951	INTRON CG42340
2L	3524885	2L_3524885_SNP [dm3] 2L_3524885_SNP [dm6]	G	A	3.987e^-5	0.951	UPSTREAM Sr-CIV & 1 other INTERGENIC
2R	6652972	2R_6652972_SNP [dm3] 2R_10765467_SNP [dm6]	G	A	4.050e^-5	0.951	INTRON CG33144
2L	6298530	2L_6298530_SNP [dm3] 2L_6298530_SNP [dm6]	T	A	4.113e^-5	0.951	INTRON Ddr
2R	6170439	2R_6170439_SNP [dm3] 2R_10282934_SNP [dm6]	C	T	4.156e^-5	0.951	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1944444	2R_1944444_SNP [dm3] 2R_6056939_SNP [dm6]	T	C	4.266e^-5	0.951	DOWNSTREAM CG7856 INTRON CCHa2-R
X	11194792	X_11194792_SNP [dm3] X_11300759_SNP [dm6]	A	G	4.283e^-5	0.951	INTRON CG44422
3R	22236025	3R_22236025_SNP [dm3] 3R_26410303_SNP [dm6]	T	C	4.293e^-5	0.951	INTERGENIC
X	21083185	X_21083185_SNP [dm3] X_21212158_SNP [dm6]	C	T	4.296e^-5	0.951	INTRON CG32521
2L	6395640	2L_6395640_SNP [dm3] 2L_6395640_SNP [dm6]	A	G	4.402e^-5	0.951	DOWNSTREAM CG42369 INTRON CG42368
2R	1811677	2R_1811677_SNP [dm3] 2R_5924172_SNP [dm6]	A	C	4.449e^-5	0.951	INTRON CG43366	transposable element FlyBase
2R	5386951	2R_5386951_SNP [dm3] 2R_9499446_SNP [dm6]	T	G	4.488e^-5	0.951	INTRON Wnt2
X	6227633	X_6227633_SNP [dm3] X_6333600_SNP [dm6]	C	A	4.540e^-5	0.951	DOWNSTREAM CG42240 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14556124	2R_14556124_SNP [dm3] 2R_18668619_SNP [dm6]	T	A	4.585e^-5	0.951	INTRON edl
2L	6296935	2L_6296935_SNP [dm3] 2L_6296935_SNP [dm6]	A	G	4.662e^-5	0.951	INTRON Ddr
2L	16940715	2L_16940715_SNP [dm3] 2L_16940715_SNP [dm6]	A	C	4.672e^-5	0.951	INTERGENIC
2R	1664806	2R_1664806_SNP [dm3] 2R_5777301_SNP [dm6]	A	T	4.858e^-5	0.951	INTRON ZnT41F
2R	10482502	2R_10482502_SNP [dm3] 2R_14594997_SNP [dm6]	G	A	4.947e^-5	0.951	NON_SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2L	13803416	2L_13803416_SNP [dm3] 2L_13803416_SNP [dm6]	C	T	5.002e^-5	0.951	UPSTREAM CAH1 INTERGENIC
3R	22030503	3R_22030503_DEL [dm3] 3R_26204781_DEL [dm6]	CACAA	C	5.017e^-5	0.951	INTRON CR44320
3L	13629014	3L_13629014_SNP [dm3] 3L_13635914_SNP [dm6]	G	A	5.124e^-5	0.951	INTRON bru-3
2R	1816382	2R_1816382_DEL [dm3] 2R_5928877_DEL [dm6]	AACTATA	A	5.148e^-5	0.951	CODON_DELETION CG43366
2L	9555623	2L_9555623_SNP [dm3] 2L_9555623_SNP [dm6]	G	A	5.243e^-5	0.951	INTRON jp
3L	14523267	3L_14523267_SNP [dm3] 3L_14530167_SNP [dm6]	A	T	5.343e^-5	0.951	INTRON bbg
2L	12411225	2L_12411225_SNP [dm3] 2L_12411225_SNP [dm6]	T	C	5.512e^-5	0.951	INTRON vir-1
2L	4155327	2L_4155327_SNP [dm3] 2L_4155327_SNP [dm6]	G	T	5.553e^-5	0.951	INTERGENIC
3R	24541817	3R_24541817_SNP [dm3] 3R_28716095_SNP [dm6]	A	C	5.607e^-5	0.951	NON_SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo
2R	14556129	2R_14556129_SNP [dm3] 2R_18668624_SNP [dm6]	C	T	5.612e^-5	0.951	INTRON edl
3L	6018102	3L_6018102_SNP [dm3] 3L_6025002_SNP [dm6]	C	T	5.669e^-5	0.951	SPLICE_SITE_REGION PVRAP INTRON PVRAP	TF binding site mE1_TFBS_chinmo
2R	18864909	2R_18864909_SNP [dm3] 2R_22977386_SNP [dm6]	A	T	5.772e^-5	0.951	INTERGENIC
2L	3845311	2L_3845311_SNP [dm3] 2L_3845311_SNP [dm6]	C	A	5.854e^-5	0.951	EXON CR44983	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4768725	2L_4768725_SNP [dm3] 2L_4768725_SNP [dm6]	A	G	5.876e^-5	0.951	INTRON CG15630
2R	5386952	2R_5386952_SNP [dm3] 2R_9499447_SNP [dm6]	T	G	5.944e^-5	0.951	INTRON Wnt2
2L	4454023	2L_4454023_SNP [dm3] 2L_4454023_SNP [dm6]	C	A	5.945e^-5	0.951	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14224895	2R_14224895_SNP [dm3] 2R_18337390_SNP [dm6]	T	G	5.976e^-5	0.951	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6896782	3L_6896782_SNP [dm3] 3L_6903682_SNP [dm6]	G	T	6.113e^-5	0.951	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17016969	3R_17016969_SNP [dm3] 3R_21191247_SNP [dm6]	C	T	6.174e^-5	0.951	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13159155	3R_13159155_SNP [dm3] 3R_17333433_SNP [dm6]	C	T	6.282e^-5	0.951	INTRON beat-IIa	TF binding site BDTNP1_TFBS_dl
3L	11162959	3L_11162959_SNP [dm3] 3L_11169859_SNP [dm6]	A	T	6.362e^-5	0.951	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10789978	2L_10789978_SNP [dm3] 2L_10789978_SNP [dm6]	T	G	6.378e^-5	0.951	UPSTREAM CG31870 INTRON CG31869
2R	16725598	2R_16725598_SNP [dm3] 2R_20838093_SNP [dm6]	A	G	6.446e^-5	0.951	INTRON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	16715568	3L_16715568_SNP [dm3] 3L_16722468_SNP [dm6]	C	T	6.462e^-5	0.951	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4755403	2L_4755403_SNP [dm3] 2L_4755403_SNP [dm6]	C	T	6.519e^-5	0.951	INTRON CG15630
X	17025319	X_17025319_SNP [dm3] X_17131286_SNP [dm6]	C	G	6.593e^-5	0.951	INTRON CG5004
3L	6846703	3L_6846703_SNP [dm3] 3L_6853603_SNP [dm6]	A	T	6.621e^-5	0.951	INTERGENIC
3R	20722644	3R_20722644_SNP [dm3] 3R_24896922_SNP [dm6]	T	C	6.685e^-5	0.951	SPLICE_SITE_REGION CG11069 DOWNSTREAM CG13643 INTRON CG11069
3R	20722657	3R_20722657_SNP [dm3] 3R_24896935_SNP [dm6]	G	C	6.685e^-5	0.951	NON_SYNONYMOUS_CODING CG11069 DOWNSTREAM CG13643
2R	2090395	2R_2090395_SNP [dm3] 2R_6202890_SNP [dm6]	G	C	6.747e^-5	0.951	UTR_5_PRIME CG30431 DOWNSTREAM CG8335	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	4037921	2L_4037921_SNP [dm3] 2L_4037921_SNP [dm6]	T	C	6.779e^-5	0.951	INTRON ed
X	3483509	X_3483509_SNP [dm3] X_3589476_SNP [dm6]	A	C	6.808e^-5	0.951	INTRON AstA-R1
2R	10609192	2R_10609192_SNP [dm3] 2R_14721687_SNP [dm6]	C	T	6.813e^-5	0.951	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6590611	2R_6590611_SNP [dm3] 2R_10703106_SNP [dm6]	C	T	6.848e^-5	0.951	INTRON stan
X	3483508	X_3483508_SNP [dm3] X_3589475_SNP [dm6]	G	A	6.850e^-5	0.951	INTRON AstA-R1
3L	6018450	3L_6018450_SNP [dm3] 3L_6025350_SNP [dm6]	A	G	6.872e^-5	0.951	INTRON PVRAP
2L	4773483	2L_4773483_SNP [dm3] 2L_4773483_SNP [dm6]	A	T	6.907e^-5	0.951	INTRON CG15630
3R	15576595	3R_15576595_DEL [dm3] 3R_19750873_DEL [dm6]	TTT	T	6.966e^-5	0.951	INTRON GluClalpha
3L	11162944	3L_11162944_SNP [dm3] 3L_11169844_SNP [dm6]	T	A	6.977e^-5	0.951	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17932256	3R_17932256_SNP [dm3] 3R_22106534_SNP [dm6]	G	A	7.018e^-5	0.951	DOWNSTREAM CG13407 INTRON CG5778
2L	7484029	2L_7484029_DEL [dm3] 2L_7484029_DEL [dm6]	TACGCCACAGGCAATTGT...	T	7.227e^-5	0.951	INTRON Ziz	TF binding site mE1_TFBS_inv
2R	10483150	2R_10483150_SNP [dm3] 2R_14595645_SNP [dm6]	A	G	7.257e^-5	0.951	UTR_3_PRIME RpI1 DOWNSTREAM CG12869	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19603979	2R_19603979_SNP [dm3] 2R_23716456_SNP [dm6]	T	G	7.295e^-5	0.951	INTRON Sesn
X	8720401	X_8720401_DEL [dm3] X_8826368_DEL [dm6]	TGGT	T	7.357e^-5	0.951	INTERGENIC
X	21078068	X_21078068_SNP [dm3] X_21207041_SNP [dm6]	A	T	7.442e^-5	0.951	DOWNSTREAM CG32521 INTRON CG32521	TF binding site mE1_TFBS_kn
2R	1924677	2R_1924677_SNP [dm3] 2R_6037172_SNP [dm6]	C	T	7.470e^-5	0.951	NON_SYNONYMOUS_CODING CG14591 UPSTREAM SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5635381	2L_5635381_SNP [dm3] 2L_5635381_SNP [dm6]	A	C	7.475e^-5	0.951	INTRON CG31646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3920047	3R_3920047_SNP [dm3] 3R_8094325_SNP [dm6]	C	T	7.551e^-5	0.951	SYNONYMOUS_CODING CG7900	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6162123	2R_6162123_SNP [dm3] 2R_10274618_SNP [dm6]	A	C	7.582e^-5	0.951	INTRON CAP
3R	26723558	3R_26723558_SNP [dm3] 3R_30897836_SNP [dm6]	A	C	7.583e^-5	0.951	INTRON Cyp4c3
3R	11218994	3R_11218994_SNP [dm3] 3R_15393272_SNP [dm6]	C	T	7.642e^-5	0.951	SYNONYMOUS_CODING Rbp UTR_3_PRIME Rbp
3L	7173911	3L_7173911_SNP [dm3] 3L_7180811_SNP [dm6]	T	C	7.654e^-5	0.951	INTRON Dscam2	TF binding site mE1_TFBS_inv
3L	11162942	3L_11162942_SNP [dm3] 3L_11169842_SNP [dm6]	A	G	7.654e^-5	0.951	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	11807312	X_11807312_SNP [dm3] X_11913279_SNP [dm6]	G	A	7.687e^-5	0.951	INTRON pot
3R	24258449	3R_24258449_SNP [dm3] 3R_28432727_SNP [dm6]	T	A	7.741e^-5	0.951	INTRON beat-VI
2R	14273118	2R_14273118_DEL [dm3] 2R_18385613_DEL [dm6]	TT	T	7.751e^-5	0.951	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16988901	2L_16988901_SNP [dm3] 2L_16988901_SNP [dm6]	A	G	7.789e^-5	0.951	INTRON beat-IIIb
2R	17159562	2R_17159562_DEL [dm3] 2R_21272057_DEL [dm6]	TTATCAGTATATTTGA...	T	7.830e^-5	0.951	INTRON Rgk3
2L	990526	2L_990526_SNP [dm3] 2L_990526_SNP [dm6]	G	A	7.859e^-5	0.951	EXON CR44801
3R	17016687	3R_17016687_SNP [dm3] 3R_21190965_SNP [dm6]	C	T	7.913e^-5	0.951	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10609198	2R_10609198_SNP [dm3] 2R_14721693_SNP [dm6]	G	A	7.928e^-5	0.951	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8796340	2R_8796340_SNP [dm3] 2R_12908835_SNP [dm6]	A	G	7.951e^-5	0.951	INTERGENIC
2R	15058924	2R_15058924_SNP [dm3] 2R_19171419_SNP [dm6]	G	A	8.037e^-5	0.951	INTRON CG10737
3L	22668259	3L_22668259_SNP [dm3] 3L_22675159_SNP [dm6]	G	T	8.109e^-5	0.951	INTRON CG14457
3L	5542352	3L_5542352_SNP [dm3] 3L_5549252_SNP [dm6]	A	G	8.126e^-5	0.951	INTRON CG10625
3L	4376814	3L_4376814_SNP [dm3] 3L_4376814_SNP [dm6]	G	A	8.264e^-5	0.951	DOWNSTREAM CR44360 INTRON DopEcR
2R	14848050	2R_14848050_SNP [dm3] 2R_18960545_SNP [dm6]	A	T	8.286e^-5	0.951	INTERGENIC
X	20017198	X_20017198_SNP [dm3] X_20123165_SNP [dm6]	T	A	8.333e^-5	0.951	DOWNSTREAM CG34331 INTRON CG34331
2R	17159482	2R_17159482_SNP [dm3] 2R_21271977_SNP [dm6]	G	A	8.371e^-5	0.951	INTRON Rgk3
3R	6281600	3R_6281600_SNP [dm3] 3R_10455878_SNP [dm6]	G	A	8.376e^-5	0.951	INTERGENIC
2L	7267421	2L_7267421_DEL [dm3] 2L_7267421_DEL [dm6]	AGCTCCA	A	8.453e^-5	0.951	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6297759	2L_6297759_SNP [dm3] 2L_6297759_SNP [dm6]	C	A	8.457e^-5	0.951	INTRON Ddr
3R	17017197	3R_17017197_SNP [dm3] 3R_21191475_SNP [dm6]	C	T	8.466e^-5	0.951	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2R	15389341	2R_15389341_SNP [dm3] 2R_19501836_SNP [dm6]	A	T	8.470e^-5	0.951	UPSTREAM CG16926 INTERGENIC
2L	4761084	2L_4761084_SNP [dm3] 2L_4761084_SNP [dm6]	C	T	8.520e^-5	0.951	INTRON CG15630
2R	11177465	2R_11177465_SNP [dm3] 2R_15289960_SNP [dm6]	A	G	8.664e^-5	0.951	INTRON Trpm
2L	14490389	2L_14490389_SNP [dm3] 2L_14490389_SNP [dm6]	A	C	8.756e^-5	0.951	UPSTREAM noc INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	7175897	2L_7175897_SNP [dm3] 2L_7175897_SNP [dm6]	C	T	8.792e^-5	0.951	INTERGENIC
2L	2060255	2L_2060255_SNP [dm3] 2L_2060255_SNP [dm6]	T	C	8.795e^-5	0.951	INTRON dpr3
3L	16098981	3L_16098981_SNP [dm3] 3L_16105881_SNP [dm6]	C	T	8.888e^-5	0.951	SYNONYMOUS_CODING CG43295 UPSTREAM IntS9 DOWNSTREAM Zn72D
3R	17965432	3R_17965432_SNP [dm3] 3R_22139710_SNP [dm6]	G	T	8.908e^-5	0.951	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12770400	3L_12770400_SNP [dm3] 3L_12777300_SNP [dm6]	G	T	8.941e^-5	0.951	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15564906	2R_15564906_SNP [dm3] 2R_19677401_SNP [dm6]	T	C	9.097e^-5	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23606690	3R_23606690_SNP [dm3] 3R_27780968_SNP [dm6]	C	G	9.138e^-5	0.951	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	4700968	3R_4700968_SNP [dm3] 3R_8875246_SNP [dm6]	T	C	9.186e^-5	0.951	INTRON pyd
2R	5285166	2R_5285166_SNP [dm3] 2R_9397661_SNP [dm6]	C	T	9.209e^-5	0.951	SYNONYMOUS_CODING CG8801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18727892	3R_18727892_SNP [dm3] 3R_22902170_SNP [dm6]	C	T	9.334e^-5	0.951	INTRON klg
2L	16072075	2L_16072075_SNP [dm3] 2L_16072075_SNP [dm6]	C	G	9.366e^-5	0.951	DOWNSTREAM CR44870 INTRON beat-Ia
2R	1811771	2R_1811771_DEL [dm3] 2R_5924266_DEL [dm6]	TAT	T	9.404e^-5	0.951	INTRON CG43366	transposable element FlyBase
2L	4761098	2L_4761098_SNP [dm3] 2L_4761098_SNP [dm6]	G	A	9.414e^-5	0.951	INTRON CG15630
2R	14456704	2R_14456704_SNP [dm3] 2R_18569199_SNP [dm6]	C	T	9.492e^-5	0.951	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3974881	2L_3974881_SNP [dm3] 2L_3974881_SNP [dm6]	C	T	9.521e^-5	0.951	INTRON fred
2R	14575306	2R_14575306_SNP [dm3] 2R_18687801_SNP [dm6]	G	T	9.624e^-5	0.951	UPSTREAM Sik3 INTRON CG42855	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4454411	2L_4454411_SNP [dm3] 2L_4454411_SNP [dm6]	G	A	9.652e^-5	0.951	UTR_5_PRIME CG15440 UPSTREAM CG15434 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	18441962	3R_18441962_SNP [dm3] 3R_22616240_SNP [dm6]	T	C	9.656e^-5	0.951	UPSTREAM CG31161 INTRON EF-G2
2R	4657257	2R_4657257_SNP [dm3] 2R_8769752_SNP [dm6]	T	C	9.717e^-5	0.951	UPSTREAM CR44278 INTERGENIC
3R	23589036	3R_23589036_SNP [dm3] 3R_27763314_SNP [dm6]	C	T	9.738e^-5	0.951	INTERGENIC
2R	13833240	2R_13833240_SNP [dm3] 2R_17945735_SNP [dm6]	A	G	9.930e^-5	0.951	INTERGENIC
3L	8315123	3L_8315123_SNP [dm3] 3L_8322023_SNP [dm6]	G	A	9.940e^-5	0.951	SYNONYMOUS_CODING CG13670
2R	17736252	2R_17736252_SNP [dm3] 2R_21848747_SNP [dm6]	C	A	1.005e^-4	0.951	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	26684339	3R_26684339_SNP [dm3] 3R_30858617_SNP [dm6]	T	C	1.007e^-4	0.951	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22039306	3R_22039306_SNP [dm3] 3R_26213584_SNP [dm6]	A	G	1.008e^-4	0.951	INTERGENIC
2L	4427328	2L_4427328_SNP [dm3] 2L_4427328_SNP [dm6]	T	C	1.012e^-4	0.951	INTRON CG15431
3L	11128084	3L_11128084_SNP [dm3] 3L_11134984_SNP [dm6]	A	G	1.017e^-4	0.951	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
2L	3921369	2L_3921369_SNP [dm3] 2L_3921369_SNP [dm6]	A	C	1.021e^-4	0.951	INTRON fred
2L	10535020	2L_10535020_SNP [dm3] 2L_10535020_SNP [dm6]	C	T	1.038e^-4	0.951	SYNONYMOUS_CODING CG18302
3L	11161190	3L_11161190_SNP [dm3] 3L_11168090_SNP [dm6]	A	G	1.049e^-4	0.951	INTRON wls	TF binding site BDTNP1_TFBS_twi
2R	7003350	2R_7003350_SNP [dm3] 2R_11115845_SNP [dm6]	G	A	1.053e^-4	0.951	INTRON luna	TF binding site BDTNP1_TFBS_dl
2R	7030415	2R_7030415_SNP [dm3] 2R_11142910_SNP [dm6]	T	C	1.054e^-4	0.951	NON_SYNONYMOUS_CODING CG13229
3L	1360784	3L_1360784_SNP [dm3] 3L_1360784_SNP [dm6]	G	A	1.062e^-4	0.951	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18418689	2R_18418689_SNP [dm3] 2R_22531184_SNP [dm6]	T	A	1.065e^-4	0.951	INTRON px
3L	5542342	3L_5542342_INS [dm3] 3L_5549242_INS [dm6]	G	GT	1.066e^-4	0.951	INTRON CG10625
2L	10794313	2L_10794313_SNP [dm3] 2L_10794313_SNP [dm6]	A	T	1.068e^-4	0.951	INTRON CG31869
3R	23548187	3R_23548187_SNP [dm3] 3R_27722465_SNP [dm6]	C	A	1.072e^-4	0.951	INTERGENIC
X	3483341	X_3483341_DEL [dm3] X_3589308_DEL [dm6]	AACCAAA	A	1.077e^-4	0.951	INTRON AstA-R1
3R	12478294	3R_12478294_SNP [dm3] 3R_16652572_SNP [dm6]	C	A	1.082e^-4	0.951	UTR_3_PRIME modSP UPSTREAM CG14907	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h
2R	1010092	2R_1010092_SNP [dm3] 2R_5122587_SNP [dm6]	A	T	1.089e^-4	0.951	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
2R	14575297	2R_14575297_SNP [dm3] 2R_18687792_SNP [dm6]	C	T	1.104e^-4	0.951	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9429286	X_9429286_SNP [dm3] X_9535253_SNP [dm6]	C	G	1.110e^-4	0.951	DOWNSTREAM CG34026 INTRON CG32700
3R	15892162	3R_15892162_SNP [dm3] 3R_20066440_SNP [dm6]	A	G	1.111e^-4	0.951	INTERGENIC
3L	16099053	3L_16099053_DEL [dm3] 3L_16105953_DEL [dm6]	TATAT	T	1.118e^-4	0.951	UPSTREAM IntS9 DOWNSTREAM Zn72D INTRON CG43295
3L	12770399	3L_12770399_SNP [dm3] 3L_12777299_SNP [dm6]	C	T	1.118e^-4	0.951	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10482904	2R_10482904_SNP [dm3] 2R_14595399_SNP [dm6]	T	G	1.121e^-4	0.951	UTR_3_PRIME CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
3R	22030531	3R_22030531_SNP [dm3] 3R_26204809_SNP [dm6]	T	A	1.128e^-4	0.951	INTRON CR44320
2L	9649750	2L_9649750_SNP [dm3] 2L_9649750_SNP [dm6]	C	A	1.136e^-4	0.951	SYNONYMOUS_CODING Apoltp
X	13137494	X_13137494_SNP [dm3] X_13243461_SNP [dm6]	C	A	1.168e^-4	0.951	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13137495	X_13137495_SNP [dm3] X_13243462_SNP [dm6]	T	G	1.168e^-4	0.951	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	9114343	X_9114343_SNP [dm3] X_9220310_SNP [dm6]	G	A	1.183e^-4	0.951	INTRON t	TF binding site mE1_TFBS_cad
2R	18862501	2R_18862501_SNP [dm3] 2R_22974978_SNP [dm6]	G	A	1.188e^-4	0.951	INTERGENIC
2L	4512664	2L_4512664_SNP [dm3] 2L_4512664_SNP [dm6]	G	T	1.191e^-4	0.951	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4768918	2L_4768918_SNP [dm3] 2L_4768918_SNP [dm6]	G	C	1.191e^-4	0.951	INTRON CG15630
2R	11982628	2R_11982628_SNP [dm3] 2R_16095123_SNP [dm6]	G	A	1.192e^-4	0.951	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14850794	2R_14850794_INS [dm3] 2R_18963289_INS [dm6]	T	TTTGATACAT	1.198e^-4	0.951	INTERGENIC
3L	6896894	3L_6896894_SNP [dm3] 3L_6903794_SNP [dm6]	T	A	1.199e^-4	0.951	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13396555	3L_13396555_SNP [dm3] 3L_13403455_SNP [dm6]	A	T	1.205e^-4	0.951	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17016798	3R_17016798_SNP [dm3] 3R_21191076_SNP [dm6]	G	T	1.207e^-4	0.951	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8790943	2R_8790943_SNP [dm3] 2R_12903438_SNP [dm6]	C	A	1.210e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25137632	3R_25137632_SNP [dm3] 3R_29311910_SNP [dm6]	C	G	1.217e^-4	0.951	INTERGENIC	TF binding site mE1_TFBS_sens
2L	4599242	2L_4599242_SNP [dm3] 2L_4599242_SNP [dm6]	A	T	1.220e^-4	0.951	INTRON dp
2R	8790973	2R_8790973_SNP [dm3] 2R_12903468_SNP [dm6]	T	G	1.225e^-4	0.951	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6976971	2L_6976971_SNP [dm3] 2L_6976971_SNP [dm6]	C	T	1.228e^-4	0.951	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12678351	3L_12678351_DEL [dm3] 3L_12685251_DEL [dm6]	AATATATATA	A	1.230e^-4	0.951	INTERGENIC
X	11794536	X_11794536_INS [dm3] X_11900503_INS [dm6]	A	AA	1.236e^-4	0.951	UTR_3_PRIME Upf1 DOWNSTREAM wisp
2L	7198914	2L_7198914_SNP [dm3] 2L_7198914_SNP [dm6]	C	T	1.245e^-4	0.951	INTRON CG4502
2L	1839590	2L_1839590_SNP [dm3] 2L_1839590_SNP [dm6]	G	T	1.250e^-4	0.951	DOWNSTREAM CR44074 INTRON wry EXON CR44073
2R	15919472	2R_15919472_SNP [dm3] 2R_20031967_SNP [dm6]	T	A	1.255e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4761711	2L_4761711_INS [dm3] 2L_4761711_INS [dm6]	G	GT	1.256e^-4	0.951	INTRON CG15630
2L	4761713	2L_4761713_SNP [dm3] 2L_4761713_SNP [dm6]	T	A	1.256e^-4	0.951	INTRON CG15630
2L	4761722	2L_4761722_DEL [dm3] 2L_4761722_DEL [dm6]	TT	A	1.256e^-4	0.951	INTRON CG15630
2L	4761725	2L_4761725_SNP [dm3] 2L_4761725_SNP [dm6]	A	G	1.256e^-4	0.951	INTRON CG15630
3R	18674836	3R_18674836_SNP [dm3] 3R_22849114_SNP [dm6]	T	C	1.258e^-4	0.951	INTERGENIC
2R	964865	2R_964865_SNP [dm3] 2R_5077360_SNP [dm6]	A	G	1.264e^-4	0.951	INTERGENIC	transposable element FlyBase
2R	13832253	2R_13832253_SNP [dm3] 2R_17944748_SNP [dm6]	A	G	1.265e^-4	0.951	INTERGENIC
2L	3965345	2L_3965345_SNP [dm3] 2L_3965345_SNP [dm6]	A	G	1.271e^-4	0.951	INTRON fred
2R	1874749	2R_1874749_SNP [dm3] 2R_5987244_SNP [dm6]	C	T	1.287e^-4	0.951	INTRON Src42A
2R	14556100	2R_14556100_SNP [dm3] 2R_18668595_SNP [dm6]	C	T	1.290e^-4	0.951	INTRON edl
3R	23678848	3R_23678848_INS [dm3] 3R_27853126_INS [dm6]	A	ACA	1.292e^-4	0.951	INTRON CG34353
3L	6846807	3L_6846807_INS [dm3] 3L_6853707_INS [dm6]	G	GCTAGGTAG	1.300e^-4	0.951	INTERGENIC
X	3483218	X_3483218_SNP [dm3] X_3589185_SNP [dm6]	G	C	1.301e^-4	0.951	INTRON AstA-R1
2R	3582129	2R_3582129_SNP [dm3] 2R_7694624_SNP [dm6]	G	A	1.304e^-4	0.951	INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7030395	2R_7030395_SNP [dm3] 2R_11142890_SNP [dm6]	T	A	1.317e^-4	0.951	NON_SYNONYMOUS_CODING CG13229
2R	8790935	2R_8790935_INS [dm3] 2R_12903430_INS [dm6]	A	ACATACAAGAACCACCGTA...	1.320e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15582146	3R_15582146_SNP [dm3] 3R_19756424_SNP [dm6]	A	T	1.322e^-4	0.951	INTRON GluClalpha
X	17165804	X_17165804_SNP [dm3] X_17271771_SNP [dm6]	G	A	1.328e^-4	0.951	NON_SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13164245	3R_13164245_SNP [dm3] 3R_17338523_SNP [dm6]	G	T	1.334e^-4	0.951	INTRON beat-IIa
2R	16725529	2R_16725529_DEL [dm3] 2R_20838024_DEL [dm6]	CC	A	1.340e^-4	0.951	INTRON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	1998162	3L_1998162_SNP [dm3] 3L_1998162_SNP [dm6]	C	A	1.342e^-4	0.951	INTERGENIC
2R	14979206	2R_14979206_SNP [dm3] 2R_19091701_SNP [dm6]	C	T	1.344e^-4	0.951	INTRON 5-HT1A
2R	15564837	2R_15564837_SNP [dm3] 2R_19677332_SNP [dm6]	C	T	1.347e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10482908	2R_10482908_SNP [dm3] 2R_14595403_SNP [dm6]	C	G	1.348e^-4	0.951	UTR_3_PRIME CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
X	10220419	X_10220419_SNP [dm3] X_10326386_SNP [dm6]	A	G	1.348e^-4	0.951	UPSTREAM CG2909 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2924203	2L_2924203_DEL [dm3] 2L_2924203_DEL [dm6]	GTATAACACTTAACAG...	G	1.350e^-4	0.951	INTRON lilli
2R	1811694	2R_1811694_SNP [dm3] 2R_5924189_SNP [dm6]	G	A	1.355e^-4	0.951	INTRON CG43366	transposable element FlyBase
X	10387041	X_10387041_SNP [dm3] X_10493008_SNP [dm6]	T	C	1.356e^-4	0.951	SYNONYMOUS_CODING spri UTR_5_PRIME spri INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5542307	3L_5542307_SNP [dm3] 3L_5549207_SNP [dm6]	G	C	1.359e^-4	0.951	INTRON CG10625
2L	3920028	2L_3920028_SNP [dm3] 2L_3920028_SNP [dm6]	C	T	1.364e^-4	0.951	INTRON fred
3L	10342229	3L_10342229_SNP [dm3] 3L_10349129_SNP [dm6]	G	A	1.365e^-4	0.951	INTRON CR44327
2R	1934867	2R_1934867_SNP [dm3] 2R_6047362_SNP [dm6]	C	A	1.368e^-4	0.951	NON_SYNONYMOUS_CODING CG34211 EXON CR44130
3R	15551669	3R_15551669_SNP [dm3] 3R_19725947_SNP [dm6]	A	G	1.368e^-4	0.951	INTERGENIC
3L	14523152	3L_14523152_SNP [dm3] 3L_14530052_SNP [dm6]	C	T	1.371e^-4	0.951	INTRON bbg
2L	19816933	2L_19816933_SNP [dm3] 2L_19816933_SNP [dm6]	A	G	1.374e^-4	0.951	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6846026	3L_6846026_SNP [dm3] 3L_6852926_SNP [dm6]	G	A	1.375e^-4	0.951	INTERGENIC
3R	25133764	3R_25133764_SNP [dm3] 3R_29308042_SNP [dm6]	G	A	1.384e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	10231982	2R_10231982_SNP [dm3] 2R_14344477_SNP [dm6]	T	C	1.388e^-4	0.951	INTRON Shroom
2R	15919466	2R_15919466_MNP [dm3] 2R_20031961_MNP [dm6]	CGA	GCT	1.393e^-4	0.951	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18861034	2R_18861034_SNP [dm3] 2R_22973511_SNP [dm6]	A	G	1.398e^-4	0.951	INTERGENIC
3R	16385328	3R_16385328_SNP [dm3] 3R_20559606_SNP [dm6]	A	T	1.400e^-4	0.951	UTR_3_PRIME CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11965065	2R_11965065_SNP [dm3] 2R_16077560_SNP [dm6]	C	A	1.418e^-4	0.952	DOWNSTREAM CR43415 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14049138	2L_14049138_SNP [dm3] 2L_14049138_SNP [dm6]	A	G	1.428e^-4	0.952	DOWNSTREAM NimC4 INTRON nAChRalpha5
2L	3921577	2L_3921577_SNP [dm3] 2L_3921577_SNP [dm6]	G	A	1.429e^-4	0.952	INTRON fred
3R	13854969	3R_13854969_SNP [dm3] 3R_18029247_SNP [dm6]	A	G	1.446e^-4	0.952	INTERGENIC
2L	14046892	2L_14046892_SNP [dm3] 2L_14046892_SNP [dm6]	A	C	1.451e^-4	0.952	UPSTREAM NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26822889	3R_26822889_SNP [dm3] 3R_30997167_SNP [dm6]	C	T	1.454e^-4	0.952	INTRON 5-HT7
X	3937039	X_3937039_SNP [dm3] X_4043006_SNP [dm6]	A	T	1.460e^-4	0.952	INTERGENIC
3R	3262180	3R_3262180_DEL [dm3] 3R_7436458_DEL [dm6]	GG	G	1.462e^-4	0.952	INTERGENIC
2L	8212773	2L_8212773_SNP [dm3] 2L_8212773_SNP [dm6]	C	T	1.482e^-4	0.952	UTR_5_PRIME CG8372 UPSTREAM CG8360 DOWNSTREAM Ssb-c31a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	2567033	3L_2567033_SNP [dm3] 3L_2567033_SNP [dm6]	A	G	1.483e^-4	0.952	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11835328	3R_11835328_DEL [dm3] 3R_16009606_DEL [dm6]	TCCT	T	1.504e^-4	0.952	INTRON GATAe
2L	3974864	2L_3974864_SNP [dm3] 2L_3974864_SNP [dm6]	G	T	1.507e^-4	0.952	INTRON fred
2R	14456702	2R_14456702_SNP [dm3] 2R_18569197_SNP [dm6]	T	C	1.514e^-4	0.952	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14816887	2R_14816887_SNP [dm3] 2R_18929382_SNP [dm6]	G	A	1.520e^-4	0.952	INTRON sano
2R	8626261	2R_8626261_SNP [dm3] 2R_12738756_SNP [dm6]	A	G	1.522e^-4	0.952	INTRON CG42663
3R	16385054	3R_16385054_SNP [dm3] 3R_20559332_SNP [dm6]	T	G	1.539e^-4	0.952	SYNONYMOUS_CODING CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20507131	2L_20507131_SNP [dm3] 2L_20507131_SNP [dm6]	A	G	1.551e^-4	0.952	INTERGENIC
3L	14282124	3L_14282124_SNP [dm3] 3L_14289024_SNP [dm6]	A	T	1.560e^-4	0.952	INTRON fz
2L	4622535	2L_4622535_SNP [dm3] 2L_4622535_SNP [dm6]	A	T	1.564e^-4	0.952	INTERGENIC
2L	4767334	2L_4767334_SNP [dm3] 2L_4767334_SNP [dm6]	G	C	1.576e^-4	0.952	INTRON CG15630
X	13004098	X_13004098_SNP [dm3] X_13110065_SNP [dm6]	G	A	1.578e^-4	0.952	INTRON CG43313	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	12657956	X_12657956_SNP [dm3] X_12763923_SNP [dm6]	T	G	1.588e^-4	0.952	UPSTREAM CG12717 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16168787	2R_16168787_SNP [dm3] 2R_20281282_SNP [dm6]	G	C	1.593e^-4	0.952	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
3L	14523237	3L_14523237_SNP [dm3] 3L_14530137_SNP [dm6]	A	T	1.593e^-4	0.952	INTRON bbg
3L	14523243	3L_14523243_SNP [dm3] 3L_14530143_SNP [dm6]	C	G	1.593e^-4	0.952	INTRON bbg
X	15492889	X_15492889_SNP [dm3] X_15598856_SNP [dm6]	G	A	1.604e^-4	0.952	INTERGENIC
2L	19752625	2L_19752625_SNP [dm3] 2L_19752625_SNP [dm6]	C	T	1.605e^-4	0.952	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25137223	3R_25137223_SNP [dm3] 3R_29311501_SNP [dm6]	C	A	1.615e^-4	0.952	INTERGENIC
2R	14573951	2R_14573951_SNP [dm3] 2R_18686446_SNP [dm6]	A	C	1.623e^-4	0.952	SYNONYMOUS_CODING CG44433 UPSTREAM CG42855	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4427327	2L_4427327_SNP [dm3] 2L_4427327_SNP [dm6]	T	C	1.625e^-4	0.952	INTRON CG15431
3R	17017207	3R_17017207_SNP [dm3] 3R_21191485_SNP [dm6]	T	A	1.634e^-4	0.952	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2R	11982622	2R_11982622_SNP [dm3] 2R_16095117_SNP [dm6]	C	T	1.634e^-4	0.952	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4770158	2L_4770158_SNP [dm3] 2L_4770158_SNP [dm6]	G	A	1.635e^-4	0.952	INTRON CG15630
2R	8823609	2R_8823609_SNP [dm3] 2R_12936104_SNP [dm6]	T	C	1.645e^-4	0.952	UTR_5_PRIME CG13322 UPSTREAM Sans	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	22223959	3L_22223959_SNP [dm3] 3L_22230859_SNP [dm6]	T	C	1.646e^-4	0.952	INTRON olf413
3R	3271000	3R_3271000_SNP [dm3] 3R_7445278_SNP [dm6]	T	G	1.647e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3573203	3L_3573203_SNP [dm3] 3L_3573203_SNP [dm6]	A	G	1.660e^-4	0.952	INTRON Eip63E
3L	12649422	3L_12649422_SNP [dm3] 3L_12656322_SNP [dm6]	A	G	1.662e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_sens
X	17243929	X_17243929_SNP [dm3] X_17349896_SNP [dm6]	T	C	1.663e^-4	0.952	INTERGENIC
3L	6846798	3L_6846798_SNP [dm3] 3L_6853698_SNP [dm6]	T	A	1.666e^-4	0.952	INTERGENIC
2L	990520	2L_990520_SNP [dm3] 2L_990520_SNP [dm6]	T	G	1.675e^-4	0.952	EXON CR44801
2R	8791031	2R_8791031_SNP [dm3] 2R_12903526_SNP [dm6]	A	G	1.681e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12853789	2R_12853789_SNP [dm3] 2R_16966284_SNP [dm6]	C	T	1.687e^-4	0.952	INTERGENIC
2L	7117805	2L_7117805_SNP [dm3] 2L_7117805_SNP [dm6]	A	G	1.702e^-4	0.952	INTRON Pvf3
2L	10796559	2L_10796559_SNP [dm3] 2L_10796559_SNP [dm6]	G	A	1.706e^-4	0.952	INTRON CG31869
2R	14664411	2R_14664411_SNP [dm3] 2R_18776906_SNP [dm6]	G	T	1.709e^-4	0.952	UTR_5_PRIME CG15093 EXON CR43964	TF binding site mE1_TFBS_HSA
2L	15756533	2L_15756533_SNP [dm3] 2L_15756533_SNP [dm6]	C	A	1.717e^-4	0.952	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
3R	10781424	3R_10781424_SNP [dm3] 3R_14955702_SNP [dm6]	T	C	1.724e^-4	0.952	INTERGENIC
2L	12779156	2L_12779156_SNP [dm3] 2L_12779156_SNP [dm6]	C	T	1.737e^-4	0.952	INTERGENIC
2L	8228461	2L_8228461_SNP [dm3] 2L_8228461_SNP [dm6]	A	T	1.751e^-4	0.952	INTRON Pvr
2L	16979309	2L_16979309_SNP [dm3] 2L_16979309_SNP [dm6]	T	C	1.753e^-4	0.952	INTRON beat-IIIb
3L	16183832	3L_16183832_SNP [dm3] 3L_16190732_SNP [dm6]	T	C	1.757e^-4	0.952	INTERGENIC
2L	2052946	2L_2052946_SNP [dm3] 2L_2052946_SNP [dm6]	A	G	1.758e^-4	0.952	INTERGENIC
2L	3482315	2L_3482315_SNP [dm3] 2L_3482315_SNP [dm6]	T	A	1.764e^-4	0.952	INTRON CG15414
3L	13565129	3L_13565129_SNP [dm3] 3L_13572029_SNP [dm6]	T	G	1.769e^-4	0.952	INTRON bru-3
3R	15733066	3R_15733066_INS [dm3] 3R_19907344_INS [dm6]	A	ATTATAAA	1.776e^-4	0.952	UPSTREAM CR45047 INTRON RhoGAP92B
X	17165805	X_17165805_SNP [dm3] X_17271772_SNP [dm6]	A	G	1.801e^-4	0.952	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20871739	X_20871739_SNP [dm3] X_21000712_SNP [dm6]	A	T	1.803e^-4	0.952	INTERGENIC
3L	13343462	3L_13343462_SNP [dm3] 3L_13350362_SNP [dm6]	C	A	1.809e^-4	0.952	NON_SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12255037	2L_12255037_SNP [dm3] 2L_12255037_SNP [dm6]	C	G	1.811e^-4	0.952	INTRON aret
X	7511324	X_7511324_SNP [dm3] X_7617291_SNP [dm6]	G	C	1.823e^-4	0.952	INTRON ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16546705	2L_16546705_SNP [dm3] 2L_16546705_SNP [dm6]	G	T	1.823e^-4	0.952	INTRON CG42389
2R	5290796	2R_5290796_SNP [dm3] 2R_9403291_SNP [dm6]	T	A	1.825e^-4	0.952	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	15611472	X_15611472_SNP [dm3] X_15717439_SNP [dm6]	C	T	1.828e^-4	0.952	SYNONYMOUS_CODING CG8184	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3921352	2L_3921352_DEL [dm3] 2L_3921352_DEL [dm6]	TGT	T	1.832e^-4	0.952	INTRON fred
2L	10773896	2L_10773896_SNP [dm3] 2L_10773896_SNP [dm6]	T	G	1.835e^-4	0.952	SYNONYMOUS_CODING CG31869	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18641721	3L_18641721_INS [dm3] 3L_18648621_INS [dm6]	C	CCC	1.840e^-4	0.952	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3R	26822890	3R_26822890_SNP [dm3] 3R_30997168_SNP [dm6]	T	C	1.846e^-4	0.952	INTRON 5-HT7
2R	14815480	2R_14815480_SNP [dm3] 2R_18927975_SNP [dm6]	G	A	1.851e^-4	0.952	INTRON sano
2R	11177516	2R_11177516_SNP [dm3] 2R_15290011_SNP [dm6]	A	G	1.859e^-4	0.952	INTRON Trpm
3L	16491698	3L_16491698_SNP [dm3] 3L_16498598_SNP [dm6]	G	T	1.861e^-4	0.952	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9242349	2L_9242349_SNP [dm3] 2L_9242349_SNP [dm6]	C	T	1.862e^-4	0.952	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_chinmo
3L	8315168	3L_8315168_SNP [dm3] 3L_8322068_SNP [dm6]	G	A	1.873e^-4	0.952	SYNONYMOUS_CODING CG13670
3R	21898193	3R_21898193_SNP [dm3] 3R_26072471_SNP [dm6]	C	G	1.875e^-4	0.952	UPSTREAM CR44950 INTERGENIC
3L	11128080	3L_11128080_SNP [dm3] 3L_11134980_SNP [dm6]	C	T	1.880e^-4	0.952	UPSTREAM CG14143 DOWNSTREAM CG42575 INTERGENIC
X	21908514	X_21908514_SNP [dm3] X_22506678_SNP [dm6]	C	T	1.881e^-4	0.952	INTRON l_1_G0196	transposable element FlyBase
X	12284935	X_12284935_SNP [dm3] X_12390902_SNP [dm6]	C	T	1.881e^-4	0.952	INTERGENIC
3L	5960811	3L_5960811_SNP [dm3] 3L_5967711_SNP [dm6]	C	A	1.882e^-4	0.952	UTR_3_PRIME CG10479	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	12344438	3L_12344438_SNP [dm3] 3L_12351338_SNP [dm6]	C	A	1.885e^-4	0.952	START_GAINED CrzR UTR_5_PRIME CrzR
3L	15932669	3L_15932669_SNP [dm3] 3L_15939569_SNP [dm6]	C	G	1.892e^-4	0.952	INTRON Pka-C3
X	5246266	X_5246266_SNP [dm3] X_5352233_SNP [dm6]	C	A	1.895e^-4	0.952	SYNONYMOUS_CODING SK	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	19584653	3R_19584653_SNP [dm3] 3R_23758931_SNP [dm6]	A	G	1.897e^-4	0.952	UPSTREAM Hrd3 DOWNSTREAM CG10219 INTRON Plip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1760313	2L_1760313_SNP [dm3] 2L_1760313_SNP [dm6]	A	T	1.903e^-4	0.952	INTERGENIC
2L	2461701	2L_2461701_SNP [dm3] 2L_2461701_SNP [dm6]	A	C	1.912e^-4	0.952	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	3582741	2R_3582741_SNP [dm3] 2R_7695236_SNP [dm6]	T	C	1.914e^-4	0.952	START_GAINED CG1399 UTR_5_PRIME CG1399 INTRON CG1399	TF binding site mE1_TFBS_inv
3L	7062370	3L_7062370_SNP [dm3] 3L_7069270_SNP [dm6]	A	C	1.925e^-4	0.952	UPSTREAM CG32391 INTRON CG8641
2R	16413936	2R_16413936_SNP [dm3] 2R_20526431_SNP [dm6]	C	G	1.926e^-4	0.952	SYNONYMOUS_CODING CG13422 DOWNSTREAM CR44650
3L	13667354	3L_13667354_SNP [dm3] 3L_13674254_SNP [dm6]	G	T	1.928e^-4	0.952	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12678366	3L_12678366_SNP [dm3] 3L_12685266_SNP [dm6]	A	T	1.950e^-4	0.952	INTERGENIC
2R	6156314	2R_6156314_SNP [dm3] 2R_10268809_SNP [dm6]	G	A	1.950e^-4	0.952	SYNONYMOUS_CODING CG12910 UPSTREAM CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9649744	2L_9649744_SNP [dm3] 2L_9649744_SNP [dm6]	C	T	1.966e^-4	0.952	SYNONYMOUS_CODING Apoltp
2R	18101608	2R_18101608_SNP [dm3] 2R_22214103_SNP [dm6]	A	T	1.968e^-4	0.952	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13803436	2L_13803436_SNP [dm3] 2L_13803436_SNP [dm6]	G	C	1.969e^-4	0.952	UPSTREAM CAH1 INTERGENIC
3R	15892155	3R_15892155_SNP [dm3] 3R_20066433_SNP [dm6]	G	A	1.973e^-4	0.952	INTERGENIC
2R	11295381	2R_11295381_SNP [dm3] 2R_15407876_SNP [dm6]	T	C	1.976e^-4	0.952	UPSTREAM Mtk INTRON CG43729
2L	4763304	2L_4763304_SNP [dm3] 2L_4763304_SNP [dm6]	G	A	1.977e^-4	0.952	SYNONYMOUS_CODING CG42523 INTRON CG15630
2L	4767095	2L_4767095_SNP [dm3] 2L_4767095_SNP [dm6]	C	T	1.977e^-4	0.952	INTRON CG15630
2R	6162156	2R_6162156_SNP [dm3] 2R_10274651_SNP [dm6]	A	T	1.978e^-4	0.952	INTRON CAP
2L	2024792	2L_2024792_SNP [dm3] 2L_2024792_SNP [dm6]	C	T	1.979e^-4	0.952	INTRON CG4238
3R	25135787	3R_25135787_SNP [dm3] 3R_29310065_SNP [dm6]	T	G	1.983e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
X	17347156	X_17347156_SNP [dm3] X_17453123_SNP [dm6]	T	A	1.999e^-4	0.952	UPSTREAM CG8568 INTERGENIC
2L	20484094	2L_20484094_SNP [dm3] 2L_20484094_SNP [dm6]	T	A	2.004e^-4	0.952	INTRON CR44980
3L	6846773	3L_6846773_SNP [dm3] 3L_6853673_SNP [dm6]	C	T	2.016e^-4	0.952	INTERGENIC
2L	14046889	2L_14046889_SNP [dm3] 2L_14046889_SNP [dm6]	A	G	2.020e^-4	0.952	UPSTREAM NimC4 INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19744590	2L_19744590_SNP [dm3] 2L_19744590_SNP [dm6]	A	G	2.023e^-4	0.952	NON_SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4764001	2L_4764001_SNP [dm3] 2L_4764001_SNP [dm6]	T	G	2.034e^-4	0.952	DOWNSTREAM CG42523 INTRON CG15630
2R	14575289	2R_14575289_SNP [dm3] 2R_18687784_SNP [dm6]	G	A	2.039e^-4	0.952	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11162923	3L_11162923_SNP [dm3] 3L_11169823_SNP [dm6]	C	G	2.044e^-4	0.952	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17020804	3L_17020804_SNP [dm3] 3L_17027704_SNP [dm6]	C	A	2.045e^-4	0.952	SYNONYMOUS_CODING CG7730 DOWNSTREAM Fit2
3L	5482071	3L_5482071_SNP [dm3] 3L_5488971_SNP [dm6]	C	G	2.046e^-4	0.952	INTERGENIC
X	15205648	X_15205648_SNP [dm3] X_15311615_SNP [dm6]	C	A	2.052e^-4	0.952	INTRON gce	TF binding site mE1_TFBS_chinmo
3R	12464998	3R_12464998_SNP [dm3] 3R_16639276_SNP [dm6]	C	A	2.064e^-4	0.952	UTR_3_PRIME Fas1 UPSTREAM nonA-l
2L	3921356	2L_3921356_SNP [dm3] 2L_3921356_SNP [dm6]	G	T	2.066e^-4	0.952	INTRON fred
3L	6018386	3L_6018386_SNP [dm3] 3L_6025286_SNP [dm6]	G	A	2.066e^-4	0.952	SYNONYMOUS_CODING PVRAP
3R	20722614	3R_20722614_SNP [dm3] 3R_24896892_SNP [dm6]	T	G	2.067e^-4	0.952	DOWNSTREAM CG13643 INTRON CG11069
2L	12570433	2L_12570433_SNP [dm3] 2L_12570433_SNP [dm6]	G	A	2.067e^-4	0.952	DOWNSTREAM CR44598 & 1 other INTERGENIC
2L	13756962	2L_13756962_SNP [dm3] 2L_13756962_SNP [dm6]	G	C	2.075e^-4	0.952	DOWNSTREAM CR44846 INTRON TM9SF4
3L	10345939	3L_10345939_SNP [dm3] 3L_10352839_SNP [dm6]	T	A	2.075e^-4	0.952	INTRON CR44327
2L	4771471	2L_4771471_SNP [dm3] 2L_4771471_SNP [dm6]	G	T	2.079e^-4	0.952	INTRON CG15630
X	12288621	X_12288621_SNP [dm3] X_12394588_SNP [dm6]	A	T	2.080e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16036541	3R_16036541_SNP [dm3] 3R_20210819_SNP [dm6]	C	A	2.087e^-4	0.952	INTRON Nlg4
2L	3299867	2L_3299867_SNP [dm3] 2L_3299867_SNP [dm6]	G	C	2.094e^-4	0.952	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10317405	2R_10317405_SNP [dm3] 2R_14429900_SNP [dm6]	C	T	2.105e^-4	0.952	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12464864	3R_12464864_SNP [dm3] 3R_16639142_SNP [dm6]	G	A	2.117e^-4	0.952	UTR_3_PRIME Fas1
3L	2476620	3L_2476620_DEL [dm3] 3L_2476620_DEL [dm6]	CCTTGCTCTTGGTCCT...	AGGA	2.119e^-4	0.952	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4761301	2L_4761301_SNP [dm3] 2L_4761301_SNP [dm6]	C	T	2.122e^-4	0.952	INTRON CG15630
3R	9192640	3R_9192640_SNP [dm3] 3R_13366918_SNP [dm6]	A	T	2.137e^-4	0.952	UPSTREAM Dic1 & 1 other INTRON Dic1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1619202	2R_1619202_SNP [dm3] 2R_5731697_SNP [dm6]	T	G	2.154e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17590626	2L_17590626_SNP [dm3] 2L_17590626_SNP [dm6]	A	G	2.155e^-4	0.952	SYNONYMOUS_CODING Oli UPSTREAM CR44410 DOWNSTREAM CG6870	TF binding site BDTNP1_TFBS_dl
2L	9649819	2L_9649819_SNP [dm3] 2L_9649819_SNP [dm6]	C	T	2.156e^-4	0.952	SYNONYMOUS_CODING Apoltp
2L	4670119	2L_4670119_SNP [dm3] 2L_4670119_SNP [dm6]	A	G	2.157e^-4	0.952	INTERGENIC
2L	10350674	2L_10350674_SNP [dm3] 2L_10350674_SNP [dm6]	T	C	2.162e^-4	0.952	INTRON CG34367
2R	8791080	2R_8791080_SNP [dm3] 2R_12903575_SNP [dm6]	G	A	2.171e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4769767	2L_4769767_SNP [dm3] 2L_4769767_SNP [dm6]	G	T	2.178e^-4	0.952	INTRON CG15630
2L	13803440	2L_13803440_SNP [dm3] 2L_13803440_SNP [dm6]	G	A	2.180e^-4	0.952	UPSTREAM CAH1 INTERGENIC
3L	10960220	3L_10960220_SNP [dm3] 3L_10967120_SNP [dm6]	A	T	2.202e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA
2L	4809532	2L_4809532_SNP [dm3] 2L_4809532_SNP [dm6]	A	C	2.203e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11905632	3R_11905632_SNP [dm3] 3R_16079910_SNP [dm6]	C	G	2.210e^-4	0.952	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22235917	3R_22235917_SNP [dm3] 3R_26410195_SNP [dm6]	T	A	2.213e^-4	0.952	INTERGENIC
2L	5605476	2L_5605476_SNP [dm3] 2L_5605476_SNP [dm6]	T	A	2.225e^-4	0.952	INTRON CG14010
3L	14523259	3L_14523259_SNP [dm3] 3L_14530159_SNP [dm6]	C	A	2.229e^-4	0.952	INTRON bbg
3R	14166414	3R_14166414_SNP [dm3] 3R_18340692_SNP [dm6]	C	T	2.231e^-4	0.952	INTRON CG15803
2L	12673331	2L_12673331_SNP [dm3] 2L_12673331_SNP [dm6]	C	T	2.232e^-4	0.952	SYNONYMOUS_CODING pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1443940	3L_1443940_SNP [dm3] 3L_1443940_SNP [dm6]	C	T	2.232e^-4	0.952	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9971232	2R_9971232_SNP [dm3] 2R_14083727_SNP [dm6]	T	C	2.236e^-4	0.952	INTRON Prosap
2L	3925449	2L_3925449_SNP [dm3] 2L_3925449_SNP [dm6]	T	A	2.238e^-4	0.952	INTRON fred
2L	4761680	2L_4761680_SNP [dm3] 2L_4761680_SNP [dm6]	C	T	2.239e^-4	0.952	INTRON CG15630
2L	4761407	2L_4761407_SNP [dm3] 2L_4761407_SNP [dm6]	G	A	2.254e^-4	0.952	INTRON CG15630
2L	4762036	2L_4762036_SNP [dm3] 2L_4762036_SNP [dm6]	A	G	2.254e^-4	0.952	UPSTREAM CG42523 INTRON CG15630
2L	16936346	2L_16936346_SNP [dm3] 2L_16936346_SNP [dm6]	C	A	2.269e^-4	0.952	INTERGENIC
2R	6991997	2R_6991997_SNP [dm3] 2R_11104492_SNP [dm6]	G	T	2.273e^-4	0.952	INTRON luna
2L	8212115	2L_8212115_SNP [dm3] 2L_8212115_SNP [dm6]	A	G	2.279e^-4	0.952	UTR_3_PRIME CG8372 UPSTREAM Su_var_205 & 1 other DOWNSTREAM Ssb-c31a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_ttk
3L	7173888	3L_7173888_INS [dm3] 3L_7180788_INS [dm6]	A	ATACTACACTAGAGT...	2.300e^-4	0.952	INTRON Dscam2	TF binding site mE1_TFBS_inv
2R	10317420	2R_10317420_SNP [dm3] 2R_14429915_SNP [dm6]	A	T	2.301e^-4	0.952	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11128835	3R_11128835_SNP [dm3] 3R_15303113_SNP [dm6]	A	C	2.304e^-4	0.952	INTRON Tm1
3L	4342502	3L_4342502_SNP [dm3] 3L_4342502_SNP [dm6]	A	G	2.307e^-4	0.952	INTRON Cip4
2R	19603980	2R_19603980_SNP [dm3] 2R_23716457_SNP [dm6]	C	T	2.307e^-4	0.952	INTRON Sesn
3R	25137584	3R_25137584_SNP [dm3] 3R_29311862_SNP [dm6]	A	G	2.320e^-4	0.952	INTERGENIC
2R	3625214	2R_3625214_SNP [dm3] 2R_7737709_SNP [dm6]	A	T	2.322e^-4	0.952	UTR_3_PRIME CG45093 & 1 other DOWNSTREAM CG30497 & 1 other
3L	8734153	3L_8734153_SNP [dm3] 3L_8741053_SNP [dm6]	G	C	2.323e^-4	0.952	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2219092	3R_2219092_SNP [dm3] 3R_6393370_SNP [dm6]	T	A	2.324e^-4	0.952	INTRON Dmtn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	3737115	2L_3737115_DEL [dm3] 2L_3737115_DEL [dm6]	AA	T	2.328e^-4	0.952	INTRON CG10019
3R	2226716	3R_2226716_DEL [dm3] 3R_6400994_DEL [dm6]	GACTGTCGTGTTCAG...	G	2.329e^-4	0.952	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl
2L	12570438	2L_12570438_SNP [dm3] 2L_12570438_SNP [dm6]	T	G	2.334e^-4	0.952	DOWNSTREAM CR44598 & 1 other INTERGENIC
2L	12777978	2L_12777978_SNP [dm3] 2L_12777978_SNP [dm6]	A	G	2.341e^-4	0.952	INTERGENIC
3R	15606910	3R_15606910_SNP [dm3] 3R_19781188_SNP [dm6]	G	A	2.345e^-4	0.952	UPSTREAM CG11407 DOWNSTREAM CG11391 INTERGENIC
2L	2793814	2L_2793814_SNP [dm3] 2L_2793814_SNP [dm6]	C	T	2.355e^-4	0.952	SYNONYMOUS_CODING Syt1
2R	14652424	2R_14652424_INS [dm3] 2R_18764919_INS [dm6]	A	ATGTA	2.375e^-4	0.952	INTRON Mctp
2R	7378830	2R_7378830_INS [dm3] 2R_11491325_INS [dm6]	C	CGAC	2.380e^-4	0.952	INTRON inv
2R	18101569	2R_18101569_SNP [dm3] 2R_22214064_SNP [dm6]	A	T	2.384e^-4	0.952	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4310303	2L_4310303_SNP [dm3] 2L_4310303_SNP [dm6]	C	T	2.389e^-4	0.952	INTRON tutl
3R	3271116	3R_3271116_SNP [dm3] 3R_7445394_SNP [dm6]	C	T	2.399e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6846744	3L_6846744_SNP [dm3] 3L_6853644_SNP [dm6]	T	G	2.405e^-4	0.952	INTERGENIC
3L	2858312	3L_2858312_DEL [dm3] 3L_2858312_DEL [dm6]	TA	T	2.406e^-4	0.952	INTRON CG43444
2R	9439305	2R_9439305_INS [dm3] 2R_13551800_INS [dm6]	C	TG	2.425e^-4	0.952	UPSTREAM CG33156 INTRON CG33156
X	5599627	X_5599627_SNP [dm3] X_5705594_SNP [dm6]	C	T	2.432e^-4	0.952	INTRON CG4096	TF binding site mE1_TFBS_run
3R	20351578	3R_20351578_SNP [dm3] 3R_24525856_SNP [dm6]	A	G	2.447e^-4	0.952	INTRON CG13618	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	5599341	X_5599341_SNP [dm3] X_5705308_SNP [dm6]	T	C	2.450e^-4	0.952	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	11635969	3L_11635969_SNP [dm3] 3L_11642869_SNP [dm6]	T	G	2.453e^-4	0.952	UTR_3_PRIME CG32091 DOWNSTREAM CG6071
2L	6472602	2L_6472602_SNP [dm3] 2L_6472602_SNP [dm6]	G	A	2.468e^-4	0.952	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl
3R	26188442	3R_26188442_SNP [dm3] 3R_30362720_SNP [dm6]	A	T	2.482e^-4	0.952	UTR_3_PRIME hdc DOWNSTREAM hdc
X	5675879	X_5675879_SNP [dm3] X_5781846_SNP [dm6]	A	G	2.486e^-4	0.952	UPSTREAM CG3108 INTRON CG42699
2R	16108220	2R_16108220_SNP [dm3] 2R_20220715_SNP [dm6]	C	A	2.500e^-4	0.952	DOWNSTREAM CR45423 INTERGENIC
3R	26684507	3R_26684507_SNP [dm3] 3R_30858785_SNP [dm6]	A	T	2.509e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4809533	2L_4809533_SNP [dm3] 2L_4809533_SNP [dm6]	A	G	2.511e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6896798	3L_6896798_SNP [dm3] 3L_6903698_SNP [dm6]	T	C	2.519e^-4	0.952	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10609205	2R_10609205_INS [dm3] 2R_14721700_INS [dm6]	G	GCACT	2.523e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4082093	2L_4082093_SNP [dm3] 2L_4082093_SNP [dm6]	A	G	2.532e^-4	0.952	INTRON ed
3R	15780197	3R_15780197_SNP [dm3] 3R_19954475_SNP [dm6]	G	T	2.533e^-4	0.952	INTRON Hs6st
2R	9439359	2R_9439359_SNP [dm3] 2R_13551854_SNP [dm6]	A	T	2.539e^-4	0.952	UPSTREAM CG33156 INTRON CG33156
2L	16793985	2L_16793985_SNP [dm3] 2L_16793985_SNP [dm6]	C	T	2.546e^-4	0.952	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12410765	2L_12410765_SNP [dm3] 2L_12410765_SNP [dm6]	T	A	2.546e^-4	0.952	INTRON vir-1
3L	14428092	3L_14428092_SNP [dm3] 3L_14434992_SNP [dm6]	T	A	2.546e^-4	0.952	INTRON bbg
3L	10344817	3L_10344817_SNP [dm3] 3L_10351717_SNP [dm6]	G	A	2.547e^-4	0.952	INTRON CR44327
3L	6896589	3L_6896589_SNP [dm3] 3L_6903489_SNP [dm6]	A	G	2.549e^-4	0.952	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	10479379	2R_10479379_SNP [dm3] 2R_14591874_SNP [dm6]	G	A	2.550e^-4	0.952	UPSTREAM CG12869 INTRON CG12869	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	19634229	2R_19634229_SNP [dm3] 2R_23746706_SNP [dm6]	G	T	2.553e^-4	0.952	UTR_5_PRIME egl UPSTREAM CG13560	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	6273400	3L_6273400_SNP [dm3] 3L_6280300_SNP [dm6]	A	G	2.557e^-4	0.952	INTERGENIC
2R	15264343	2R_15264343_SNP [dm3] 2R_19376838_SNP [dm6]	T	G	2.571e^-4	0.952	INTRON CG10062
X	3482642	X_3482642_SNP [dm3] X_3588609_SNP [dm6]	C	G	2.573e^-4	0.952	INTRON AstA-R1
3L	14066471	3L_14066471_SNP [dm3] 3L_14073371_SNP [dm6]	G	A	2.573e^-4	0.952	SYNONYMOUS_CODING Pex1
2L	3921359	2L_3921359_SNP [dm3] 2L_3921359_SNP [dm6]	T	A	2.574e^-4	0.952	INTRON fred
3L	13565109	3L_13565109_SNP [dm3] 3L_13572009_SNP [dm6]	G	T	2.576e^-4	0.952	INTRON bru-3
2L	20464811	2L_20464811_SNP [dm3] 2L_20464811_SNP [dm6]	T	G	2.583e^-4	0.952	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	22363311	3L_22363311_SNP [dm3] 3L_22370211_SNP [dm6]	A	G	2.586e^-4	0.952	INTRON Ten-m
3R	16359058	3R_16359058_SNP [dm3] 3R_20533336_SNP [dm6]	C	T	2.591e^-4	0.952	DOWNSTREAM MtnE INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1720542	2R_1720542_SNP [dm3] 2R_5833037_SNP [dm6]	C	A	2.591e^-4	0.952	INTRON dpr12
3L	16992739	3L_16992739_SNP [dm3] 3L_16999639_SNP [dm6]	T	G	2.596e^-4	0.952	INTRON CG3764	TF binding site mE1_TFBS_chinmo transposable element FlyBase
2R	15058871	2R_15058871_SNP [dm3] 2R_19171366_SNP [dm6]	T	C	2.598e^-4	0.952	SYNONYMOUS_CODING CG10737
2L	15542065	2L_15542065_SNP [dm3] 2L_15542065_SNP [dm6]	A	T	2.600e^-4	0.952	INTERGENIC
3L	11302679	3L_11302679_SNP [dm3] 3L_11309579_SNP [dm6]	C	G	2.601e^-4	0.952	INTERGENIC
2L	6472615	2L_6472615_INS [dm3] 2L_6472615_INS [dm6]	C	CGG	2.603e^-4	0.952	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl
3L	10202763	3L_10202763_SNP [dm3] 3L_10209663_SNP [dm6]	G	A	2.603e^-4	0.952	INTERGENIC
2R	16168805	2R_16168805_SNP [dm3] 2R_20281300_SNP [dm6]	G	T	2.605e^-4	0.952	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
2L	3441138	2L_3441138_SNP [dm3] 2L_3441138_SNP [dm6]	C	T	2.606e^-4	0.952	INTERGENIC
2L	7239097	2L_7239097_SNP [dm3] 2L_7239097_SNP [dm6]	T	C	2.618e^-4	0.952	INTRON Ndae1
2L	6565596	2L_6565596_SNP [dm3] 2L_6565596_SNP [dm6]	T	C	2.620e^-4	0.952	SYNONYMOUS_CODING CG13766 DOWNSTREAM Ent2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13565166	3L_13565166_SNP [dm3] 3L_13572066_SNP [dm6]	C	T	2.622e^-4	0.952	INTRON bru-3
2L	2016907	2L_2016907_SNP [dm3] 2L_2016907_SNP [dm6]	C	G	2.624e^-4	0.952	UPSTREAM CG4238 INTRON CG4238
2L	11858131	2L_11858131_SNP [dm3] 2L_11858131_SNP [dm6]	G	A	2.643e^-4	0.952	INTRON Pde1c
X	5600055	X_5600055_SNP [dm3] X_5706022_SNP [dm6]	G	A	2.649e^-4	0.952	INTRON CG4096
3L	6018492	3L_6018492_SNP [dm3] 3L_6025392_SNP [dm6]	A	T	2.650e^-4	0.952	INTRON PVRAP
2R	10480241	2R_10480241_INS [dm3] 2R_14592736_INS [dm6]	A	ATA	2.655e^-4	0.952	UTR_5_PRIME CG12869	TF binding site mE1_TFBS_cad
2L	6230604	2L_6230604_SNP [dm3] 2L_6230604_SNP [dm6]	T	G	2.662e^-4	0.952	INTERGENIC
2R	10929814	2R_10929814_SNP [dm3] 2R_15042309_SNP [dm6]	T	A	2.668e^-4	0.952	DOWNSTREAM hbs INTERGENIC
2L	13695060	2L_13695060_INS [dm3] 2L_13695060_INS [dm6]	G	AT	2.671e^-4	0.952	INTRON CG31814
2L	3925451	2L_3925451_INS [dm3] 2L_3925451_INS [dm6]	T	TT	2.678e^-4	0.952	INTRON fred
2R	16633108	2R_16633108_SNP [dm3] 2R_20745603_SNP [dm6]	G	C	2.683e^-4	0.952	INTRON dpr
3L	18803329	3L_18803329_SNP [dm3] 3L_18810229_SNP [dm6]	A	C	2.689e^-4	0.952	INTRON CG14073	TF binding site BDTNP1_TFBS_dl
2L	9613022	2L_9613022_SNP [dm3] 2L_9613022_SNP [dm6]	G	A	2.690e^-4	0.952	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	15199958	2L_15199958_SNP [dm3] 2L_15199958_SNP [dm6]	A	G	2.704e^-4	0.952	INTRON CG4168
3R	23589043	3R_23589043_SNP [dm3] 3R_27763321_SNP [dm6]	C	G	2.709e^-4	0.952	INTERGENIC
2R	3073538	2R_3073538_SNP [dm3] 2R_7186033_SNP [dm6]	T	C	2.709e^-4	0.952	DOWNSTREAM CG30384 INTRON pk
3R	23517895	3R_23517895_INS [dm3] 3R_27692173_INS [dm6]	G	GGCG	2.712e^-4	0.952	UTR_3_PRIME CG12880	TF binding site mE1_TFBS_chinmo
2R	5261751	2R_5261751_SNP [dm3] 2R_9374246_SNP [dm6]	G	C	2.713e^-4	0.952	UTR_5_PRIME CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4726945	2L_4726945_SNP [dm3] 2L_4726945_SNP [dm6]	C	G	2.713e^-4	0.952	INTERGENIC
2R	12615759	2R_12615759_SNP [dm3] 2R_16728254_SNP [dm6]	T	C	2.725e^-4	0.952	INTRON CG30463
3R	10517724	3R_10517724_SNP [dm3] 3R_14692002_SNP [dm6]	G	A	2.743e^-4	0.952	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
2L	11936939	2L_11936939_SNP [dm3] 2L_11936939_SNP [dm6]	T	G	2.747e^-4	0.952	INTRON Or33b
X	7150924	X_7150924_SNP [dm3] X_7256891_SNP [dm6]	T	A	2.751e^-4	0.952	INTRON CR44357
2R	12823569	2R_12823569_SNP [dm3] 2R_16936064_SNP [dm6]	A	G	2.752e^-4	0.952	INTRON Pkc53E
3R	25320926	3R_25320926_SNP [dm3] 3R_29495204_SNP [dm6]	A	T	2.754e^-4	0.952	DOWNSTREAM Diedel INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	8213566	2L_8213566_SNP [dm3] 2L_8213566_SNP [dm6]	C	G	2.765e^-4	0.952	UPSTREAM CG8372 & 1 other INTRON CG8360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11746925	2L_11746925_SNP [dm3] 2L_11746925_SNP [dm6]	G	C	2.768e^-4	0.952	INTERGENIC
X	5599353	X_5599353_SNP [dm3] X_5705320_SNP [dm6]	G	A	2.783e^-4	0.952	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	11903621	X_11903621_SNP [dm3] X_12009588_SNP [dm6]	C	T	2.784e^-4	0.952	DOWNSTREAM CG1492 INTRON CG1806
X	7738180	X_7738180_SNP [dm3] X_7844147_SNP [dm6]	C	G	2.792e^-4	0.952	INTERGENIC
2R	11843791	2R_11843791_SNP [dm3] 2R_15956286_SNP [dm6]	C	A	2.793e^-4	0.952	SYNONYMOUS_CODING CG8366 INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22033618	3R_22033618_SNP [dm3] 3R_26207896_SNP [dm6]	C	T	2.800e^-4	0.952	INTRON CR44320
3L	13630289	3L_13630289_DEL [dm3] 3L_13637189_DEL [dm6]	GCGA	G	2.810e^-4	0.952	INTRON bru-3
3R	21537153	3R_21537153_INS [dm3] 3R_25711431_INS [dm6]	A	ATTTATAT	2.814e^-4	0.952	INTRON LpR2
3R	2672894	3R_2672894_SNP [dm3] 3R_6847172_SNP [dm6]	C	A	2.823e^-4	0.952	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25725057	3R_25725057_SNP [dm3] 3R_29899335_SNP [dm6]	C	G	2.828e^-4	0.952	DOWNSTREAM CG31038 INTRON CG31038
2L	967236	2L_967236_SNP [dm3] 2L_967236_SNP [dm6]	G	A	2.836e^-4	0.952	INTERGENIC
2L	2016858	2L_2016858_SNP [dm3] 2L_2016858_SNP [dm6]	G	T	2.840e^-4	0.952	UPSTREAM CG4238 INTRON CG4238
2R	14850810	2R_14850810_INS [dm3] 2R_18963305_INS [dm6]	T	TTC	2.846e^-4	0.952	INTERGENIC
X	3483225	X_3483225_SNP [dm3] X_3589192_SNP [dm6]	A	G	2.854e^-4	0.952	INTRON AstA-R1
2L	5605781	2L_5605781_SNP [dm3] 2L_5605781_SNP [dm6]	G	A	2.860e^-4	0.952	INTRON CG14010
3L	3592178	3L_3592178_SNP [dm3] 3L_3592178_SNP [dm6]	G	A	2.864e^-4	0.952	INTRON Eip63E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17845942	3R_17845942_SNP [dm3] 3R_22020220_SNP [dm6]	G	A	2.866e^-4	0.952	SYNONYMOUS_CODING CG6455 UPSTREAM CG6439	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6653166	2R_6653166_SNP [dm3] 2R_10765661_SNP [dm6]	C	T	2.880e^-4	0.952	INTRON CG33144
2R	17117044	2R_17117044_SNP [dm3] 2R_21229539_SNP [dm6]	A	C	2.881e^-4	0.952	INTRON ASPP
3R	3262179	3R_3262179_INS [dm3] 3R_7436457_INS [dm6]	T	TTTAAGT	2.885e^-4	0.952	INTERGENIC
3L	8388794	3L_8388794_SNP [dm3] 3L_8395694_SNP [dm6]	A	G	2.887e^-4	0.952	UPSTREAM CG7120 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	5259437	2R_5259437_SNP [dm3] 2R_9371932_SNP [dm6]	T	A	2.894e^-4	0.952	INTRON CG13954
X	4514344	X_4514344_SNP [dm3] X_4620311_SNP [dm6]	G	T	2.915e^-4	0.952	NON_SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15551848	3R_15551848_SNP [dm3] 3R_19726126_SNP [dm6]	T	A	2.918e^-4	0.952	INTERGENIC
3R	19026535	3R_19026535_DEL [dm3] 3R_23200813_DEL [dm6]	TT	T	2.919e^-4	0.952	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11037304	X_11037304_SNP [dm3] X_11143271_SNP [dm6]	T	C	2.927e^-4	0.952	SYNONYMOUS_CODING CG15202 UPSTREAM CG15201
2R	11982689	2R_11982689_SNP [dm3] 2R_16095184_SNP [dm6]	A	T	2.933e^-4	0.952	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10480129	2R_10480129_SNP [dm3] 2R_14592624_SNP [dm6]	C	A	2.938e^-4	0.952	UTR_5_PRIME CG12869	TF binding site mE1_TFBS_cad
2R	12888407	2R_12888407_SNP [dm3] 2R_17000902_SNP [dm6]	T	C	2.949e^-4	0.952	SYNONYMOUS_CODING ste24a UPSTREAM ste24b	TF binding site mE1_TFBS_sens
3R	4712625	3R_4712625_SNP [dm3] 3R_8886903_SNP [dm6]	G	A	2.954e^-4	0.952	INTRON pyd
2R	10719573	2R_10719573_SNP [dm3] 2R_14832068_SNP [dm6]	G	A	2.955e^-4	0.952	UPSTREAM CG10205 INTERGENIC
2L	19879295	2L_19879295_SNP [dm3] 2L_19879295_SNP [dm6]	A	C	2.956e^-4	0.952	INTRON sick
2L	13695004	2L_13695004_SNP [dm3] 2L_13695004_SNP [dm6]	C	T	2.968e^-4	0.952	INTRON CG31814
2L	2057162	2L_2057162_SNP [dm3] 2L_2057162_SNP [dm6]	G	A	2.968e^-4	0.952	INTRON Or22c
2L	5605942	2L_5605942_SNP [dm3] 2L_5605942_SNP [dm6]	G	A	2.973e^-4	0.952	SYNONYMOUS_CODING CG14010
2L	20226968	2L_20226968_DEL [dm3] 2L_20226968_DEL [dm6]	AA	A	2.973e^-4	0.952	INTERGENIC
2R	16229291	2R_16229291_SNP [dm3] 2R_20341786_SNP [dm6]	G	C	2.981e^-4	0.952	UPSTREAM CG16739 INTERGENIC
3L	14070731	3L_14070731_SNP [dm3] 3L_14077631_SNP [dm6]	T	G	2.990e^-4	0.952	INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6018520	3L_6018520_SNP [dm3] 3L_6025420_SNP [dm6]	T	C	3.003e^-4	0.952	SPLICE_SITE_REGION PVRAP SYNONYMOUS_CODING PVRAP
2L	5091077	2L_5091077_SNP [dm3] 2L_5091077_SNP [dm6]	A	T	3.007e^-4	0.952	INTRON pgant5
3L	21143164	3L_21143164_SNP [dm3] 3L_21150064_SNP [dm6]	C	A	3.010e^-4	0.952	INTRON Ac78C
3L	8734043	3L_8734043_SNP [dm3] 3L_8740943_SNP [dm6]	G	A	3.011e^-4	0.952	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8302817	3L_8302817_SNP [dm3] 3L_8309717_SNP [dm6]	T	C	3.014e^-4	0.952	UPSTREAM BI-1 DOWNSTREAM CG7185 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	9439329	2R_9439329_SNP [dm3] 2R_13551824_SNP [dm6]	T	G	3.015e^-4	0.952	UPSTREAM CG33156 INTRON CG33156
3L	19346190	3L_19346190_SNP [dm3] 3L_19353090_SNP [dm6]	G	C	3.017e^-4	0.952	INTRON CG32206
2R	17159547	2R_17159547_SNP [dm3] 2R_21272042_SNP [dm6]	A	T	3.028e^-4	0.952	INTRON Rgk3
3R	24422128	3R_24422128_SNP [dm3] 3R_28596406_SNP [dm6]	C	A	3.029e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4206966	2L_4206966_SNP [dm3] 2L_4206966_SNP [dm6]	T	G	3.031e^-4	0.952	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12979541	3R_12979541_DEL [dm3] 3R_17153819_DEL [dm6]	AAAATAA	A	3.033e^-4	0.952	DOWNSTREAM CG5292 INTRON Mur89F	TF binding site mE1_TFBS_cad
3R	12979549	3R_12979549_DEL [dm3] 3R_17153827_DEL [dm6]	TAA	T	3.033e^-4	0.952	DOWNSTREAM CG5292 INTRON Mur89F	TF binding site mE1_TFBS_cad
3L	9428545	3L_9428545_SNP [dm3] 3L_9435445_SNP [dm6]	C	T	3.048e^-4	0.952	UPSTREAM MTF-1 & 1 other INTRON MTF-1
X	8631088	X_8631088_INS [dm3] X_8737055_INS [dm6]	C	CAC	3.055e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	1400022	2L_1400022_SNP [dm3] 2L_1400022_SNP [dm6]	G	A	3.057e^-4	0.952	INTRON lea	TF binding site mE1_TFBS_Trl
2R	2443064	2R_2443064_SNP [dm3] 2R_6555559_SNP [dm6]	A	C	3.059e^-4	0.952	INTRON jing
3R	6519124	3R_6519124_SNP [dm3] 3R_10693402_SNP [dm6]	C	T	3.065e^-4	0.952	INTRON Skeletor	TF binding site mE1_TFBS_chinmo
2L	1400021	2L_1400021_SNP [dm3] 2L_1400021_SNP [dm6]	T	A	3.068e^-4	0.952	INTRON lea	TF binding site mE1_TFBS_Trl
2L	4610028	2L_4610028_SNP [dm3] 2L_4610028_SNP [dm6]	C	A	3.075e^-4	0.952	INTRON dp
X	21373606	X_21373606_SNP [dm3] X_21502579_SNP [dm6]	T	C	3.077e^-4	0.952	INTRON CR45082
2R	14527186	2R_14527186_SNP [dm3] 2R_18639681_SNP [dm6]	A	T	3.078e^-4	0.952	UPSTREAM CheA56a & 1 other DOWNSTREAM tRNA:G3:55E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16099223	3L_16099223_SNP [dm3] 3L_16106123_SNP [dm6]	T	A	3.079e^-4	0.952	NON_SYNONYMOUS_CODING CG43295 UPSTREAM IntS9 DOWNSTREAM Zn72D
2L	16940731	2L_16940731_SNP [dm3] 2L_16940731_SNP [dm6]	G	A	3.079e^-4	0.952	INTERGENIC
3L	1438761	3L_1438761_SNP [dm3] 3L_1438761_SNP [dm6]	C	A	3.085e^-4	0.952	UPSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	17147822	2R_17147822_DEL [dm3] 2R_21260317_DEL [dm6]	AGAGCAGA	A	3.088e^-4	0.952	INTRON Rgk3
X	18672362	X_18672362_SNP [dm3] X_18778329_SNP [dm6]	G	A	3.090e^-4	0.952	INTRON CG6891
2R	13493842	2R_13493842_SNP [dm3] 2R_17606337_SNP [dm6]	G	A	3.097e^-4	0.952	SYNONYMOUS_CODING CG10936
2L	19788983	2L_19788983_SNP [dm3] 2L_19788983_SNP [dm6]	C	T	3.101e^-4	0.952	INTRON CdGAPr
2R	1615752	2R_1615752_SNP [dm3] 2R_5728247_SNP [dm6]	T	A	3.105e^-4	0.952	UPSTREAM ap INTERGENIC
2L	4208985	2L_4208985_SNP [dm3] 2L_4208985_SNP [dm6]	T	C	3.105e^-4	0.952	SYNONYMOUS_CODING ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	15582080	3R_15582080_SNP [dm3] 3R_19756358_SNP [dm6]	T	A	3.115e^-4	0.952	INTRON GluClalpha
2R	18101506	2R_18101506_INS [dm3] 2R_22214001_INS [dm6]	GG	TTT	3.125e^-4	0.952	INTRON ari-2	TF binding site mE1_TFBS_Trl
2R	9658023	2R_9658023_SNP [dm3] 2R_13770518_SNP [dm6]	G	A	3.134e^-4	0.952	INTRON Cpr50Ca
3L	2688774	3L_2688774_DEL [dm3] 3L_2688774_DEL [dm6]	CCTTTC	C	3.141e^-4	0.952	INTRON Fife
2R	14816741	2R_14816741_SNP [dm3] 2R_18929236_SNP [dm6]	G	A	3.144e^-4	0.952	INTRON sano
3L	12344373	3L_12344373_SNP [dm3] 3L_12351273_SNP [dm6]	A	T	3.147e^-4	0.952	UTR_5_PRIME CrzR
3L	22218820	3L_22218820_SNP [dm3] 3L_22225720_SNP [dm6]	G	A	3.147e^-4	0.952	INTRON olf413 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3920650	2L_3920650_SNP [dm3] 2L_3920650_SNP [dm6]	T	A	3.147e^-4	0.952	INTRON fred
3L	1826165	3L_1826165_SNP [dm3] 3L_1826165_SNP [dm6]	A	G	3.150e^-4	0.952	INTRON Cpr62Ba	TF binding site mE1_TFBS_chinmo
2R	20183223	2R_20183223_SNP [dm3] 2R_24295700_SNP [dm6]	A	G	3.156e^-4	0.952	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
3L	4394303	3L_4394303_SNP [dm3] 3L_4394303_SNP [dm6]	T	A	3.162e^-4	0.952	INTRON slow	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	8555733	2R_8555733_SNP [dm3] 2R_12668228_SNP [dm6]	G	C	3.165e^-4	0.952	INTRON nemy
2L	4103840	2L_4103840_DEL [dm3] 2L_4103840_DEL [dm6]	AGTTCA	A	3.166e^-4	0.952	INTRON ed
X	19427386	X_19427386_SNP [dm3] X_19533353_SNP [dm6]	T	C	3.170e^-4	0.952	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17489881	3L_17489881_SNP [dm3] 3L_17496781_SNP [dm6]	A	C	3.171e^-4	0.952	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24793825	3R_24793825_SNP [dm3] 3R_28968103_SNP [dm6]	T	C	3.176e^-4	0.952	INTRON CG14521
2R	1616956	2R_1616956_INS [dm3] 2R_5729451_INS [dm6]	A	ACCAATTTAAA...	3.187e^-4	0.952	INTERGENIC
3R	23589966	3R_23589966_SNP [dm3] 3R_27764244_SNP [dm6]	G	T	3.189e^-4	0.952	INTERGENIC
2R	8555737	2R_8555737_SNP [dm3] 2R_12668232_SNP [dm6]	G	A	3.195e^-4	0.952	INTRON nemy
2L	3965343	2L_3965343_SNP [dm3] 2L_3965343_SNP [dm6]	T	A	3.198e^-4	0.952	INTRON fred
2R	16528284	2R_16528284_SNP [dm3] 2R_20640779_SNP [dm6]	T	A	3.201e^-4	0.952	UPSTREAM maf-S & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	8372639	2L_8372639_SNP [dm3] 2L_8372639_SNP [dm6]	C	T	3.226e^-4	0.952	INTRON CG17292
2L	990531	2L_990531_SNP [dm3] 2L_990531_SNP [dm6]	C	T	3.231e^-4	0.952	EXON CR44801
X	8526916	X_8526916_SNP [dm3] X_8632883_SNP [dm6]	A	G	3.238e^-4	0.952	SYNONYMOUS_CODING oc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	3482255	2L_3482255_SNP [dm3] 2L_3482255_SNP [dm6]	G	T	3.240e^-4	0.952	INTRON CG15414
3R	3274115	3R_3274115_SNP [dm3] 3R_7448393_SNP [dm6]	C	T	3.246e^-4	0.952	INTERGENIC
2L	16898786	2L_16898786_SNP [dm3] 2L_16898786_SNP [dm6]	T	A	3.246e^-4	0.952	NON_SYNONYMOUS_CODING CG31805 UTR_3_PRIME CG31805 INTRON tweek	TF binding site mE1_TFBS_sens
3R	18449134	3R_18449134_SNP [dm3] 3R_22623412_SNP [dm6]	G	T	3.247e^-4	0.952	INTRON loco	TF binding site mE1_TFBS_h
2L	1411882	2L_1411882_SNP [dm3] 2L_1411882_SNP [dm6]	G	A	3.253e^-4	0.952	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6653080	2R_6653080_SNP [dm3] 2R_10765575_SNP [dm6]	A	T	3.266e^-4	0.952	INTRON CG33144
2L	14016877	2L_14016877_SNP [dm3] 2L_14016877_SNP [dm6]	T	C	3.267e^-4	0.952	SYNONYMOUS_CODING bgm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15034096	2R_15034096_SNP [dm3] 2R_19146591_SNP [dm6]	G	A	3.270e^-4	0.952	INTRON ena	TF binding site mE1_TFBS_inv
2L	19788984	2L_19788984_SNP [dm3] 2L_19788984_SNP [dm6]	G	A	3.273e^-4	0.952	INTRON CdGAPr
2L	19118574	2L_19118574_SNP [dm3] 2L_19118574_SNP [dm6]	G	T	3.275e^-4	0.952	INTRON Ddc	regulatory region REDfly_CRMs
X	3170632	X_3170632_INS [dm3] X_3276599_INS [dm6]	C	CGATTCGATTCGATCC...	3.278e^-4	0.952	INTRON dnc
3R	23579230	3R_23579230_SNP [dm3] 3R_27753508_SNP [dm6]	C	A	3.279e^-4	0.952	INTERGENIC
2R	14850796	2R_14850796_SNP [dm3] 2R_18963291_SNP [dm6]	G	C	3.287e^-4	0.952	INTERGENIC
2R	14850798	2R_14850798_SNP [dm3] 2R_18963293_SNP [dm6]	C	T	3.287e^-4	0.952	INTERGENIC
2R	14850799	2R_14850799_SNP [dm3] 2R_18963294_SNP [dm6]	T	G	3.287e^-4	0.952	INTERGENIC
2R	14850803	2R_14850803_MNP [dm3] 2R_18963298_MNP [dm6]	ATT	TCA	3.287e^-4	0.952	INTERGENIC
2R	14850808	2R_14850808_SNP [dm3] 2R_18963303_SNP [dm6]	T	C	3.287e^-4	0.952	INTERGENIC
3R	11233646	3R_11233646_SNP [dm3] 3R_15407924_SNP [dm6]	C	T	3.296e^-4	0.952	UPSTREAM CG6125 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8655583	2L_8655583_SNP [dm3] 2L_8655583_SNP [dm6]	G	A	3.300e^-4	0.952	INTRON Sema-1a
3L	8437704	3L_8437704_DEL [dm3] 3L_8444604_DEL [dm6]	TATAAAT	T	3.302e^-4	0.952	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8437716	3L_8437716_SNP [dm3] 3L_8444616_SNP [dm6]	A	T	3.302e^-4	0.952	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13493779	2R_13493779_SNP [dm3] 2R_17606274_SNP [dm6]	C	T	3.309e^-4	0.952	SYNONYMOUS_CODING CG10936
X	12151363	X_12151363_SNP [dm3] X_12257330_SNP [dm6]	T	A	3.316e^-4	0.952	INTRON Ten-a
2L	16793988	2L_16793988_SNP [dm3] 2L_16793988_SNP [dm6]	T	G	3.318e^-4	0.952	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5339563	3L_5339563_SNP [dm3] 3L_5346463_SNP [dm6]	G	A	3.320e^-4	0.952	UTR_5_PRIME lama
X	7150925	X_7150925_SNP [dm3] X_7256892_SNP [dm6]	A	T	3.326e^-4	0.952	INTRON CR44357
2L	19809562	2L_19809562_SNP [dm3] 2L_19809562_SNP [dm6]	G	A	3.329e^-4	0.952	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16653540	2R_16653540_SNP [dm3] 2R_20766035_SNP [dm6]	A	C	3.331e^-4	0.952	UPSTREAM CR44665 INTERGENIC
3R	4426003	3R_4426003_SNP [dm3] 3R_8600281_SNP [dm6]	C	T	3.338e^-4	0.952	INTRON 5-HT2B
2R	9525766	2R_9525766_SNP [dm3] 2R_13638261_SNP [dm6]	C	A	3.348e^-4	0.952	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10536276	2L_10536276_SNP [dm3] 2L_10536276_SNP [dm6]	G	C	3.351e^-4	0.952	NON_SYNONYMOUS_CODING CG18302
2L	20507183	2L_20507183_SNP [dm3] 2L_20507183_SNP [dm6]	A	G	3.361e^-4	0.952	INTERGENIC
3R	13812362	3R_13812362_DEL [dm3] 3R_17986640_DEL [dm6]	AA	A	3.364e^-4	0.952	INTRON cpo
2L	20571676	2L_20571676_SNP [dm3] 2L_20571676_SNP [dm6]	C	A	3.365e^-4	0.952	INTRON CR45347
2L	18937879	2L_18937879_SNP [dm3] 2L_18937879_SNP [dm6]	A	G	3.370e^-4	0.952	INTRON ssp3
2R	11982474	2R_11982474_SNP [dm3] 2R_16094969_SNP [dm6]	G	A	3.371e^-4	0.952	INTRON Dg	TF binding site BDTNP1_TFBS_dl
2L	3920754	2L_3920754_SNP [dm3] 2L_3920754_SNP [dm6]	T	C	3.371e^-4	0.952	INTRON fred
X	20661617	X_20661617_SNP [dm3] X_20790590_SNP [dm6]	T	C	3.373e^-4	0.952	INTRON shakB
2R	6653005	2R_6653005_SNP [dm3] 2R_10765500_SNP [dm6]	A	C	3.375e^-4	0.952	INTRON CG33144
3L	3552107	3L_3552107_SNP [dm3] 3L_3552107_SNP [dm6]	G	A	3.375e^-4	0.952	INTRON Eip63E
2L	16832852	2L_16832852_SNP [dm3] 2L_16832852_SNP [dm6]	A	G	3.384e^-4	0.952	DOWNSTREAM CG31739 INTRON CG13282
3R	21457697	3R_21457697_INS [dm3] 3R_25631975_INS [dm6]	C	CC	3.393e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14341671	2L_14341671_SNP [dm3] 2L_14341671_SNP [dm6]	T	A	3.394e^-4	0.952	UPSTREAM CG33090 INTRON CG33090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19817204	2L_19817204_SNP [dm3] 2L_19817204_SNP [dm6]	T	C	3.408e^-4	0.952	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	5961028	3L_5961028_SNP [dm3] 3L_5967928_SNP [dm6]	C	T	3.417e^-4	0.952	SYNONYMOUS_CODING CG10479	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	12570466	2L_12570466_MNP [dm3] 2L_12570466_MNP [dm6]	CCT	TTC	3.423e^-4	0.952	DOWNSTREAM CR44598 & 1 other INTERGENIC
2R	14616006	2R_14616006_SNP [dm3] 2R_18728501_SNP [dm6]	C	T	3.424e^-4	0.952	SPLICE_SITE_REGION List INTRON Hs3st-A & 1 other
3R	13164171	3R_13164171_SNP [dm3] 3R_17338449_SNP [dm6]	G	A	3.426e^-4	0.952	INTRON beat-IIa
2L	4004331	2L_4004331_SNP [dm3] 2L_4004331_SNP [dm6]	A	G	3.427e^-4	0.952	SYNONYMOUS_CODING CG34176 UPSTREAM CG15422
2R	9439312	2R_9439312_SNP [dm3] 2R_13551807_SNP [dm6]	G	C	3.427e^-4	0.952	UPSTREAM CG33156 INTRON CG33156
2R	3575959	2R_3575959_SNP [dm3] 2R_7688454_SNP [dm6]	C	A	3.442e^-4	0.952	INTRON CG1399
3L	8733978	3L_8733978_SNP [dm3] 3L_8740878_SNP [dm6]	C	T	3.442e^-4	0.952	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17413769	2R_17413769_DEL [dm3] 2R_21526264_DEL [dm6]	TAATT	T	3.452e^-4	0.952	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	17331842	2R_17331842_SNP [dm3] 2R_21444337_SNP [dm6]	G	T	3.457e^-4	0.952	INTRON Sdc
3R	15583043	3R_15583043_SNP [dm3] 3R_19757321_SNP [dm6]	C	T	3.462e^-4	0.952	INTRON GluClalpha
2L	9618498	2L_9618498_SNP [dm3] 2L_9618498_SNP [dm6]	G	A	3.462e^-4	0.952	INTRON GlcAT-S
3R	9817220	3R_9817220_SNP [dm3] 3R_13991498_SNP [dm6]	A	G	3.474e^-4	0.952	INTRON rdx	TF binding site mE1_TFBS_cad
3L	16020227	3L_16020227_SNP [dm3] 3L_16027127_SNP [dm6]	C	T	3.477e^-4	0.952	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10603181	2R_10603181_SNP [dm3] 2R_14715676_SNP [dm6]	G	C	3.478e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4390054	3L_4390054_SNP [dm3] 3L_4390054_SNP [dm6]	T	A	3.481e^-4	0.952	INTRON slow
3R	12463916	3R_12463916_SNP [dm3] 3R_16638194_SNP [dm6]	A	T	3.485e^-4	0.952	UTR_3_PRIME Fas1 DOWNSTREAM Fas1 INTRON Fas1	TF binding site mE1_TFBS_HSA
3L	8302113	3L_8302113_SNP [dm3] 3L_8309013_SNP [dm6]	A	G	3.485e^-4	0.952	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2052926	2L_2052926_SNP [dm3] 2L_2052926_SNP [dm6]	A	G	3.493e^-4	0.952	INTERGENIC
2R	1829803	2R_1829803_SNP [dm3] 2R_5942298_SNP [dm6]	A	G	3.495e^-4	0.952	INTERGENIC
2R	11806050	2R_11806050_SNP [dm3] 2R_15918545_SNP [dm6]	T	C	3.495e^-4	0.952	INTRON sli	TF binding site mE1_TFBS_cad
2R	1944781	2R_1944781_SNP [dm3] 2R_6057276_SNP [dm6]	G	A	3.498e^-4	0.952	DOWNSTREAM CG7856 INTRON CCHa2-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9439303	2R_9439303_SNP [dm3] 2R_13551798_SNP [dm6]	T	A	3.502e^-4	0.952	UPSTREAM CG33156 INTRON CG33156
2R	18748915	2R_18748915_SNP [dm3] 2R_22861392_SNP [dm6]	A	T	3.506e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8623167	3L_8623167_SNP [dm3] 3L_8630067_SNP [dm6]	A	G	3.516e^-4	0.952	UPSTREAM Zasp66 INTRON Zasp66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8381521	2L_8381521_SNP [dm3] 2L_8381521_SNP [dm6]	G	A	3.519e^-4	0.952	START_GAINED Aats-ala UTR_5_PRIME Aats-ala DOWNSTREAM CG13392 INTRON Aats-ala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3921381	2L_3921381_SNP [dm3] 2L_3921381_SNP [dm6]	C	A	3.523e^-4	0.952	INTRON fred
3L	17020794	3L_17020794_SNP [dm3] 3L_17027694_SNP [dm6]	A	C	3.528e^-4	0.952	NON_SYNONYMOUS_CODING CG7730 DOWNSTREAM Fit2
2L	7239092	2L_7239092_SNP [dm3] 2L_7239092_SNP [dm6]	C	A	3.532e^-4	0.952	INTRON Ndae1
X	18836370	X_18836370_SNP [dm3] X_18942337_SNP [dm6]	T	A	3.539e^-4	0.952	INTRON CG43759
2R	6540758	2R_6540758_SNP [dm3] 2R_10653253_SNP [dm6]	T	A	3.541e^-4	0.952	INTERGENIC
X	18690097	X_18690097_SNP [dm3] X_18796064_SNP [dm6]	T	G	3.542e^-4	0.952	NON_SYNONYMOUS_CODING bnb INTRON Pk17E	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	5599332	X_5599332_DEL [dm3] X_5705299_DEL [dm6]	ATGAGCAA	A	3.547e^-4	0.952	INTRON CG4096	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	21899773	3R_21899773_SNP [dm3] 3R_26074051_SNP [dm6]	C	T	3.561e^-4	0.952	INTERGENIC
3R	21900597	3R_21900597_SNP [dm3] 3R_26074875_SNP [dm6]	C	G	3.561e^-4	0.952	INTERGENIC
2L	14544833	2L_14544833_SNP [dm3] 2L_14544833_SNP [dm6]	T	C	3.561e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10883629	2R_10883629_SNP [dm3] 2R_14996124_SNP [dm6]	T	C	3.566e^-4	0.952	DOWNSTREAM CR43830 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9428541	3L_9428541_SNP [dm3] 3L_9435441_SNP [dm6]	T	G	3.585e^-4	0.952	UPSTREAM MTF-1 & 1 other INTRON MTF-1
3L	1575591	3L_1575591_SNP [dm3] 3L_1575591_SNP [dm6]	T	G	3.593e^-4	0.952	UTR_3_PRIME CG12004 DOWNSTREAM CG12004
3R	17964710	3R_17964710_SNP [dm3] 3R_22138988_SNP [dm6]	G	C	3.594e^-4	0.952	INTRON SKIP
3L	8618817	3L_8618817_SNP [dm3] 3L_8625717_SNP [dm6]	A	G	3.595e^-4	0.952	UPSTREAM Zasp66 INTRON Zasp66
2R	16168903	2R_16168903_SNP [dm3] 2R_20281398_SNP [dm6]	A	T	3.595e^-4	0.952	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
3L	2950366	3L_2950366_SNP [dm3] 3L_2950366_SNP [dm6]	G	A	3.602e^-4	0.952	NON_SYNONYMOUS_CODING CG32846 INTRON Shab
3R	17856002	3R_17856002_SNP [dm3] 3R_22030280_SNP [dm6]	C	T	3.604e^-4	0.952	DOWNSTREAM ND42 INTRON CG13409	TF binding site mE1_TFBS_cad
3R	9817312	3R_9817312_SNP [dm3] 3R_13991590_SNP [dm6]	A	G	3.608e^-4	0.952	INTRON rdx	TF binding site mE1_TFBS_cad
2R	7530316	2R_7530316_INS [dm3] 2R_11642811_INS [dm6]	A	ATA	3.610e^-4	0.952	UTR_3_PRIME CG9003
3R	26734528	3R_26734528_SNP [dm3] 3R_30908806_SNP [dm6]	T	A	3.611e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4082104	2L_4082104_SNP [dm3] 2L_4082104_SNP [dm6]	C	A	3.620e^-4	0.952	INTRON ed
3L	649716	3L_649716_SNP [dm3] 3L_649716_SNP [dm6]	C	G	3.625e^-4	0.952	INTRON Gale	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11544949	3L_11544949_SNP [dm3] 3L_11551849_SNP [dm6]	T	A	3.626e^-4	0.952	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3R	18441572	3R_18441572_SNP [dm3] 3R_22615850_SNP [dm6]	A	G	3.628e^-4	0.952	SYNONYMOUS_CODING EF-G2 UTR_3_PRIME EF-G2 UPSTREAM CG31161
3R	3259844	3R_3259844_SNP [dm3] 3R_7434122_SNP [dm6]	T	C	3.633e^-4	0.952	INTERGENIC
3L	12856470	3L_12856470_SNP [dm3] 3L_12863370_SNP [dm6]	C	G	3.639e^-4	0.952	UPSTREAM CG10943 INTERGENIC
3R	12481520	3R_12481520_SNP [dm3] 3R_16655798_SNP [dm6]	C	T	3.640e^-4	0.952	UPSTREAM modSP DOWNSTREAM Ubx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
X	20660306	X_20660306_SNP [dm3] X_20789279_SNP [dm6]	C	T	3.644e^-4	0.952	INTRON shakB	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12570471	2L_12570471_DEL [dm3] 2L_12570471_DEL [dm6]	CATATAAGC	C	3.660e^-4	0.952	DOWNSTREAM CR44598 & 1 other INTERGENIC
X	7736837	X_7736837_SNP [dm3] X_7842804_SNP [dm6]	T	G	3.670e^-4	0.952	DOWNSTREAM CG1402 INTERGENIC
X	3517717	X_3517717_INS [dm3] X_3623684_INS [dm6]	A	AGTTTTACTTTGA...	3.675e^-4	0.952	INTRON AstA-R1
2L	3924957	2L_3924957_SNP [dm3] 2L_3924957_SNP [dm6]	C	T	3.681e^-4	0.952	INTRON fred
3R	11235440	3R_11235440_SNP [dm3] 3R_15409718_SNP [dm6]	G	T	3.690e^-4	0.952	INTRON Atx2
2R	8791050	2R_8791050_DEL [dm3] 2R_12903545_DEL [dm6]	AGTA	A	3.692e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19117375	2L_19117375_SNP [dm3] 2L_19117375_SNP [dm6]	G	A	3.697e^-4	0.952	SYNONYMOUS_CODING Ddc DOWNSTREAM CG10561	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3301053	2L_3301053_SNP [dm3] 2L_3301053_SNP [dm6]	T	A	3.701e^-4	0.952	INTRON CG9663
2L	3856380	2L_3856380_SNP [dm3] 2L_3856380_SNP [dm6]	A	G	3.705e^-4	0.952	DOWNSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1113083	2L_1113083_SNP [dm3] 2L_1113083_SNP [dm6]	G	A	3.705e^-4	0.952	SYNONYMOUS_CODING CG14340 DOWNSTREAM CG14339
3L	13966771	3L_13966771_SNP [dm3] 3L_13973671_SNP [dm6]	G	T	3.710e^-4	0.952	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17341590	X_17341590_SNP [dm3] X_17447557_SNP [dm6]	C	T	3.716e^-4	0.952	SYNONYMOUS_CODING p-cup	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10560649	3L_10560649_SNP [dm3] 3L_10567549_SNP [dm6]	A	G	3.717e^-4	0.952	INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	16273322	3L_16273322_SNP [dm3] 3L_16280222_SNP [dm6]	A	G	3.724e^-4	0.952	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
3L	11923469	3L_11923469_SNP [dm3] 3L_11930369_SNP [dm6]	A	G	3.725e^-4	0.952	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2907105	2L_2907105_SNP [dm3] 2L_2907105_SNP [dm6]	T	C	3.726e^-4	0.952	INTRON lilli
2R	11803911	2R_11803911_SNP [dm3] 2R_15916406_SNP [dm6]	G	A	3.730e^-4	0.952	INTRON sli EXON CR44373
3R	25145532	3R_25145532_SNP [dm3] 3R_29319810_SNP [dm6]	G	T	3.738e^-4	0.952	UPSTREAM Cnx99A INTERGENIC
3R	17856646	3R_17856646_SNP [dm3] 3R_22030924_SNP [dm6]	T	C	3.743e^-4	0.952	INTRON CG13409	TF binding site mE1_TFBS_cad
3R	26179411	3R_26179411_SNP [dm3] 3R_30353689_SNP [dm6]	G	C	3.753e^-4	0.952	INTRON hdc
3R	20062239	3R_20062239_DEL [dm3] 3R_24236517_DEL [dm6]	TGTAGTGTTATAATCACTCC...	T	3.761e^-4	0.952	SPLICE_SITE_REGION mask UPSTREAM scaRNA:MeU2-G25 INTRON mask	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12673460	2L_12673460_SNP [dm3] 2L_12673460_SNP [dm6]	A	G	3.763e^-4	0.952	SYNONYMOUS_CODING pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17736335	2R_17736335_SNP [dm3] 2R_21848830_SNP [dm6]	T	A	3.764e^-4	0.952	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6361145	X_6361145_SNP [dm3] X_6467112_SNP [dm6]	G	A	3.769e^-4	0.952	SYNONYMOUS_CODING CG42340 UTR_3_PRIME CG42340	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14574094	2R_14574094_SNP [dm3] 2R_18686589_SNP [dm6]	A	T	3.782e^-4	0.952	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG42855	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6846685	3L_6846685_SNP [dm3] 3L_6853585_SNP [dm6]	T	C	3.784e^-4	0.952	INTERGENIC
3R	26822833	3R_26822833_SNP [dm3] 3R_30997111_SNP [dm6]	G	A	3.784e^-4	0.952	INTRON 5-HT7
X	16522967	X_16522967_SNP [dm3] X_16628934_SNP [dm6]	A	G	3.787e^-4	0.952	SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18500193	2R_18500193_SNP [dm3] 2R_22612688_SNP [dm6]	A	G	3.795e^-4	0.952	SYNONYMOUS_CODING CG4329
2R	9281940	2R_9281940_SNP [dm3] 2R_13394435_SNP [dm6]	G	A	3.816e^-4	0.952	NON_SYNONYMOUS_CODING AttC DOWNSTREAM CG4744
3L	1002389	3L_1002389_SNP [dm3] 3L_1002389_SNP [dm6]	A	G	3.819e^-4	0.952	INTRON trio
2R	14556188	2R_14556188_DEL [dm3] 2R_18668683_DEL [dm6]	ACA	A	3.820e^-4	0.952	INTRON edl
X	16102109	X_16102109_SNP [dm3] X_16208076_SNP [dm6]	T	C	3.829e^-4	0.952	INTERGENIC
3L	4932630	3L_4932630_SNP [dm3] 3L_4932630_SNP [dm6]	T	A	3.832e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs
2L	13946991	2L_13946991_SNP [dm3] 2L_13946991_SNP [dm6]	A	T	3.835e^-4	0.952	INTRON Ance-3 & 1 other
3R	24422086	3R_24422086_SNP [dm3] 3R_28596364_SNP [dm6]	T	A	3.841e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4030067	2L_4030067_SNP [dm3] 2L_4030067_SNP [dm6]	C	A	3.850e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14428093	3L_14428093_SNP [dm3] 3L_14434993_SNP [dm6]	G	T	3.851e^-4	0.952	INTRON bbg
2L	7965015	2L_7965015_SNP [dm3] 2L_7965015_SNP [dm6]	G	T	3.854e^-4	0.952	INTRON Snoo	TF binding site mE1_TFBS_inv
3R	23286816	3R_23286816_SNP [dm3] 3R_27461094_SNP [dm6]	C	A	3.856e^-4	0.952	INTERGENIC
2R	14372248	2R_14372248_SNP [dm3] 2R_18484743_SNP [dm6]	T	A	3.866e^-4	0.952	INTRON CG30116
2R	1661100	2R_1661100_SNP [dm3] 2R_5773595_SNP [dm6]	A	G	3.872e^-4	0.952	UTR_3_PRIME Gp210
2L	9827018	2L_9827018_SNP [dm3] 2L_9827018_SNP [dm6]	A	G	3.881e^-4	0.952	INTRON nAChRalpha6
3L	10932079	3L_10932079_SNP [dm3] 3L_10938979_SNP [dm6]	C	A	3.883e^-4	0.952	INTERGENIC
3R	15582065	3R_15582065_INS [dm3] 3R_19756343_INS [dm6]	A	AGTAA	3.907e^-4	0.952	INTRON GluClalpha
2L	760956	2L_760956_SNP [dm3] 2L_760956_SNP [dm6]	C	G	3.912e^-4	0.952	UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
2R	1942958	2R_1942958_SNP [dm3] 2R_6055453_SNP [dm6]	C	A	3.915e^-4	0.952	INTRON CCHa2-R
2L	14344477	2L_14344477_SNP [dm3] 2L_14344477_SNP [dm6]	G	A	3.920e^-4	0.952	INTRON CG33090
2L	8204188	2L_8204188_SNP [dm3] 2L_8204188_SNP [dm6]	C	T	3.923e^-4	0.952	INTRON CR44119 & 1 other
2R	19108209	2R_19108209_SNP [dm3] 2R_23220686_SNP [dm6]	T	G	3.925e^-4	0.952	INTERGENIC
3R	15551554	3R_15551554_SNP [dm3] 3R_19725832_SNP [dm6]	T	C	3.927e^-4	0.952	INTERGENIC
3R	13888897	3R_13888897_SNP [dm3] 3R_18063175_SNP [dm6]	T	G	3.933e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	16868151	2L_16868151_SNP [dm3] 2L_16868151_SNP [dm6]	C	T	3.936e^-4	0.952	INTERGENIC
3R	25783184	3R_25783184_SNP [dm3] 3R_29957462_SNP [dm6]	G	A	3.941e^-4	0.952	INTRON TkR99D
2R	18101527	2R_18101527_INS [dm3] 2R_22214022_INS [dm6]	A	ACGCAAATGTAAA...	3.943e^-4	0.952	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4761718	2L_4761718_SNP [dm3] 2L_4761718_SNP [dm6]	C	A	3.944e^-4	0.952	INTRON CG15630
3R	12463949	3R_12463949_SNP [dm3] 3R_16638227_SNP [dm6]	C	A	3.947e^-4	0.952	UTR_3_PRIME Fas1 DOWNSTREAM Fas1 INTRON Fas1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16641423	2R_16641423_SNP [dm3] 2R_20753918_SNP [dm6]	A	G	3.947e^-4	0.952	DOWNSTREAM CG34202 INTERGENIC
2R	11158682	2R_11158682_SNP [dm3] 2R_15271177_SNP [dm6]	G	A	3.949e^-4	0.952	INTRON Trpm
2L	4427492	2L_4427492_SNP [dm3] 2L_4427492_SNP [dm6]	T	C	3.954e^-4	0.952	INTRON CG15431
3L	21397893	3L_21397893_SNP [dm3] 3L_21404793_SNP [dm6]	A	G	3.960e^-4	0.952	DOWNSTREAM sa INTRON rgn
3L	8302255	3L_8302255_SNP [dm3] 3L_8309155_SNP [dm6]	C	A	3.969e^-4	0.952	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4809573	2L_4809573_SNP [dm3] 2L_4809573_SNP [dm6]	T	A	3.970e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12637331	2L_12637331_SNP [dm3] 2L_12637331_SNP [dm6]	C	G	3.974e^-4	0.952	INTRON Ref2
3R	10761718	3R_10761718_SNP [dm3] 3R_14935996_SNP [dm6]	C	T	3.988e^-4	0.952	INTERGENIC
2L	16988888	2L_16988888_SNP [dm3] 2L_16988888_SNP [dm6]	A	T	4.005e^-4	0.952	INTRON beat-IIIb
3R	14060380	3R_14060380_SNP [dm3] 3R_18234658_SNP [dm6]	A	T	4.012e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	3735755	2L_3735755_SNP [dm3] 2L_3735755_SNP [dm6]	G	T	4.025e^-4	0.952	INTRON CG10019
3R	19914317	3R_19914317_SNP [dm3] 3R_24088595_SNP [dm6]	T	C	4.032e^-4	0.952	INTRON 4EHP
3L	7215436	3L_7215436_SNP [dm3] 3L_7222336_SNP [dm6]	G	T	4.034e^-4	0.952	UPSTREAM CR45410 INTERGENIC
2L	16793866	2L_16793866_INS [dm3] 2L_16793866_INS [dm6]	A	AG	4.042e^-4	0.952	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2R	17796318	2R_17796318_SNP [dm3] 2R_21908813_SNP [dm6]	T	G	4.046e^-4	0.952	INTRON Fili
3R	23487342	3R_23487342_SNP [dm3] 3R_27661620_SNP [dm6]	A	G	4.059e^-4	0.952	UPSTREAM unc80 INTERGENIC
3R	15892176	3R_15892176_SNP [dm3] 3R_20066454_SNP [dm6]	T	C	4.087e^-4	0.952	INTERGENIC
3R	15892179	3R_15892179_SNP [dm3] 3R_20066457_SNP [dm6]	A	T	4.087e^-4	0.952	INTERGENIC
3R	22053337	3R_22053337_SNP [dm3] 3R_26227615_SNP [dm6]	T	G	4.092e^-4	0.952	INTERGENIC
X	13018998	X_13018998_SNP [dm3] X_13124965_SNP [dm6]	T	C	4.092e^-4	0.952	INTRON CG32638
2R	17806202	2R_17806202_SNP [dm3] 2R_21918697_SNP [dm6]	G	A	4.092e^-4	0.952	INTRON Fili
2L	16940724	2L_16940724_SNP [dm3] 2L_16940724_SNP [dm6]	C	T	4.095e^-4	0.952	INTERGENIC
3L	16099227	3L_16099227_SNP [dm3] 3L_16106127_SNP [dm6]	T	G	4.100e^-4	0.952	NON_SYNONYMOUS_CODING CG43295 UPSTREAM IntS9 DOWNSTREAM Zn72D
3L	9297166	3L_9297166_SNP [dm3] 3L_9304066_SNP [dm6]	T	C	4.102e^-4	0.952	INTERGENIC
3R	19034058	3R_19034058_SNP [dm3] 3R_23208336_SNP [dm6]	C	T	4.106e^-4	0.952	INTRON cnc
3L	12678434	3L_12678434_SNP [dm3] 3L_12685334_SNP [dm6]	T	C	4.108e^-4	0.952	INTERGENIC
X	17291888	X_17291888_SNP [dm3] X_17397855_SNP [dm6]	C	T	4.127e^-4	0.952	SYNONYMOUS_CODING B-H1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6055182	2R_6055182_SNP [dm3] 2R_10167677_SNP [dm6]	C	G	4.138e^-4	0.952	INTRON KCNQ
2L	20494495	2L_20494495_SNP [dm3] 2L_20494495_SNP [dm6]	A	G	4.138e^-4	0.952	UPSTREAM CG34007 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12011290	2R_12011290_DEL [dm3] 2R_16123785_DEL [dm6]	TCAAGATCTCTGTATTTTGA...	T	4.140e^-4	0.952	INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco
2L	3261319	2L_3261319_SNP [dm3] 2L_3261319_SNP [dm6]	G	A	4.147e^-4	0.952	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
3L	10959005	3L_10959005_INS [dm3] 3L_10965905_INS [dm6]	G	GGG	4.156e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
X	12608705	X_12608705_SNP [dm3] X_12714672_SNP [dm6]	C	T	4.169e^-4	0.952	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl
3R	22808918	3R_22808918_SNP [dm3] 3R_26983196_SNP [dm6]	C	T	4.178e^-4	0.952	INTRON CG14253
3R	13888916	3R_13888916_SNP [dm3] 3R_18063194_SNP [dm6]	G	A	4.184e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	5264870	2R_5264870_INS [dm3] 2R_9377365_INS [dm6]	T	TCT	4.192e^-4	0.952	INTRON CG13954	TF binding site mE1_TFBS_HSA
3L	16739612	3L_16739612_SNP [dm3] 3L_16746512_SNP [dm6]	A	T	4.193e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10747777	2L_10747777_SNP [dm3] 2L_10747777_SNP [dm6]	T	A	4.203e^-4	0.952	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2872836	3L_2872836_SNP [dm3] 3L_2872836_SNP [dm6]	G	A	4.222e^-4	0.952	INTRON CG43444
3R	13887176	3R_13887176_SNP [dm3] 3R_18061454_SNP [dm6]	G	A	4.225e^-4	0.952	INTERGENIC
2L	16832835	2L_16832835_SNP [dm3] 2L_16832835_SNP [dm6]	T	C	4.225e^-4	0.952	DOWNSTREAM CG31739 INTRON CG13282
2L	15756527	2L_15756527_DEL [dm3] 2L_15756527_DEL [dm6]	TA	T	4.229e^-4	0.952	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
3R	15892073	3R_15892073_SNP [dm3] 3R_20066351_SNP [dm6]	C	G	4.232e^-4	0.952	INTERGENIC
2L	10536228	2L_10536228_SNP [dm3] 2L_10536228_SNP [dm6]	C	T	4.249e^-4	0.952	SYNONYMOUS_CODING CG18302
2L	7326950	2L_7326950_SNP [dm3] 2L_7326950_SNP [dm6]	T	C	4.258e^-4	0.952	INTERGENIC
3L	9950569	3L_9950569_SNP [dm3] 3L_9957469_SNP [dm6]	G	A	4.267e^-4	0.952	INTRON CG34356
X	5599347	X_5599347_SNP [dm3] X_5705314_SNP [dm6]	A	T	4.270e^-4	0.952	INTRON CG4096	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	5112151	2R_5112151_SNP [dm3] 2R_9224646_SNP [dm6]	C	T	4.272e^-4	0.952	INTERGENIC
3R	14506498	3R_14506498_SNP [dm3] 3R_18680776_SNP [dm6]	A	G	4.275e^-4	0.952	UTR_5_PRIME CG7708 DOWNSTREAM CG7706
2L	20637055	2L_20637055_SNP [dm3] 2L_20637055_SNP [dm6]	A	T	4.283e^-4	0.952	INTERGENIC	transposable element FlyBase
X	11903641	X_11903641_SNP [dm3] X_12009608_SNP [dm6]	C	T	4.284e^-4	0.952	DOWNSTREAM CG1492 INTRON CG1806
3R	19513443	3R_19513443_SNP [dm3] 3R_23687721_SNP [dm6]	T	G	4.291e^-4	0.952	SYNONYMOUS_CODING SPE
2R	6055184	2R_6055184_SNP [dm3] 2R_10167679_SNP [dm6]	A	C	4.295e^-4	0.952	INTRON KCNQ
X	21096533	X_21096533_SNP [dm3] X_21225506_SNP [dm6]	A	G	4.295e^-4	0.952	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3921360	2L_3921360_SNP [dm3] 2L_3921360_SNP [dm6]	T	A	4.301e^-4	0.952	INTRON fred
3R	14769582	3R_14769582_SNP [dm3] 3R_18943860_SNP [dm6]	T	C	4.305e^-4	0.952	INTRON CG42613
2L	12779247	2L_12779247_SNP [dm3] 2L_12779247_SNP [dm6]	G	A	4.310e^-4	0.952	INTERGENIC
3R	19513346	3R_19513346_SNP [dm3] 3R_23687624_SNP [dm6]	T	G	4.311e^-4	0.952	NON_SYNONYMOUS_CODING SPE
2L	7131057	2L_7131057_SNP [dm3] 2L_7131057_SNP [dm6]	C	T	4.312e^-4	0.952	INTRON Pvf3
2L	11831955	2L_11831955_DEL [dm3] 2L_11831955_DEL [dm6]	CCAATTTC	C	4.319e^-4	0.952	INTRON Pde1c
2R	8694608	2R_8694608_SNP [dm3] 2R_12807103_SNP [dm6]	T	C	4.331e^-4	0.952	UTR_3_PRIME CG17580
3R	19584198	3R_19584198_SNP [dm3] 3R_23758476_SNP [dm6]	T	A	4.334e^-4	0.952	START_GAINED Hrd3 UTR_5_PRIME Hrd3 & 1 other UPSTREAM Plip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	9201467	3R_9201467_SNP [dm3] 3R_13375745_SNP [dm6]	C	A	4.353e^-4	0.952	INTRON CG9813	transposable element FlyBase
3R	17911669	3R_17911669_SNP [dm3] 3R_22085947_SNP [dm6]	C	T	4.356e^-4	0.952	INTRON CG5778
3R	11216301	3R_11216301_SNP [dm3] 3R_15390579_SNP [dm6]	C	A	4.365e^-4	0.952	INTRON Rbp
3R	11216304	3R_11216304_SNP [dm3] 3R_15390582_SNP [dm6]	C	T	4.365e^-4	0.952	INTRON Rbp
2R	7030544	2R_7030544_SNP [dm3] 2R_11143039_SNP [dm6]	A	G	4.375e^-4	0.952	INTRON CG13229
2L	10535502	2L_10535502_SNP [dm3] 2L_10535502_SNP [dm6]	T	G	4.381e^-4	0.952	SYNONYMOUS_CODING CG18302
3R	15892161	3R_15892161_SNP [dm3] 3R_20066439_SNP [dm6]	A	G	4.382e^-4	0.952	INTERGENIC
3R	12481690	3R_12481690_SNP [dm3] 3R_16655968_SNP [dm6]	G	A	4.391e^-4	0.952	UPSTREAM modSP DOWNSTREAM Ubx INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10810121	3R_10810121_SNP [dm3] 3R_14984399_SNP [dm6]	T	A	4.392e^-4	0.952	INTERGENIC
2L	15755611	2L_15755611_SNP [dm3] 2L_15755611_SNP [dm6]	C	T	4.397e^-4	0.952	UTR_3_PRIME l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad
3L	6896710	3L_6896710_SNP [dm3] 3L_6903610_SNP [dm6]	T	A	4.404e^-4	0.952	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19119055	2L_19119055_SNP [dm3] 2L_19119055_SNP [dm6]	C	T	4.415e^-4	0.952	INTRON Ddc	regulatory region REDfly_CRMs
2L	19119088	2L_19119088_SNP [dm3] 2L_19119088_SNP [dm6]	A	G	4.415e^-4	0.952	INTRON Ddc	regulatory region REDfly_CRMs
3R	7529810	3R_7529810_SNP [dm3] 3R_11704088_SNP [dm6]	A	C	4.424e^-4	0.952	NON_SYNONYMOUS_CODING I-t
2L	11831992	2L_11831992_SNP [dm3] 2L_11831992_SNP [dm6]	G	A	4.436e^-4	0.952	INTRON Pde1c
3L	5649856	3L_5649856_SNP [dm3] 3L_5656756_SNP [dm6]	G	A	4.444e^-4	0.952	SPLICE_SITE_REGION lin-28 INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	4765158	2L_4765158_SNP [dm3] 2L_4765158_SNP [dm6]	A	G	4.449e^-4	0.952	INTRON CG15630
2L	15893988	2L_15893988_SNP [dm3] 2L_15893988_SNP [dm6]	T	C	4.451e^-4	0.952	UPSTREAM Tep1 INTERGENIC
2L	15947491	2L_15947491_SNP [dm3] 2L_15947491_SNP [dm6]	G	A	4.454e^-4	0.952	INTRON beat-Ib
2L	16793994	2L_16793994_DEL [dm3] 2L_16793994_DEL [dm6]	CGCGTT	C	4.455e^-4	0.952	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12363331	3L_12363331_SNP [dm3] 3L_12370231_SNP [dm6]	T	C	4.470e^-4	0.952	SPLICE_SITE_REGION Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17179415	X_17179415_SNP [dm3] X_17285382_SNP [dm6]	G	T	4.476e^-4	0.952	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
2R	3075680	2R_3075680_SNP [dm3] 2R_7188175_SNP [dm6]	T	A	4.482e^-4	0.952	INTRON pk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	4599036	2L_4599036_SNP [dm3] 2L_4599036_SNP [dm6]	T	A	4.483e^-4	0.952	INTRON dp	TF binding site mE1_TFBS_sbb
X	4879512	X_4879512_SNP [dm3] X_4985479_SNP [dm6]	T	A	4.490e^-4	0.952	INTRON CR44833	regulatory region REDfly_CRMs
3R	15642133	3R_15642133_SNP [dm3] 3R_19816411_SNP [dm6]	A	C	4.493e^-4	0.952	INTRON bnl
2R	17303056	2R_17303056_SNP [dm3] 2R_21415551_SNP [dm6]	G	A	4.493e^-4	0.952	INTRON Sdc
3R	16753364	3R_16753364_SNP [dm3] 3R_20927642_SNP [dm6]	G	A	4.495e^-4	0.952	UTR_3_PRIME hdly DOWNSTREAM hdly INTRON CG31191 & 1 other
3L	8316795	3L_8316795_SNP [dm3] 3L_8323695_SNP [dm6]	G	T	4.518e^-4	0.952	INTERGENIC
X	8428956	X_8428956_SNP [dm3] X_8534923_SNP [dm6]	A	T	4.540e^-4	0.952	INTRON Nrg	TF binding site BDTNP1_TFBS_dl
2R	15919186	2R_15919186_SNP [dm3] 2R_20031681_SNP [dm6]	T	C	4.547e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14507885	2R_14507885_SNP [dm3] 2R_18620380_SNP [dm6]	A	G	4.560e^-4	0.952	DOWNSTREAM Atg7 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	2090941	2R_2090941_SNP [dm3] 2R_6203436_SNP [dm6]	G	C	4.563e^-4	0.952	INTRON CG30431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	12478145	3R_12478145_SNP [dm3] 3R_16652423_SNP [dm6]	G	T	4.563e^-4	0.952	UPSTREAM CG14907 DOWNSTREAM modSP INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	9505364	2L_9505364_SNP [dm3] 2L_9505364_SNP [dm6]	T	C	4.565e^-4	0.952	INTRON CG33298
2L	9650662	2L_9650662_SNP [dm3] 2L_9650662_SNP [dm6]	A	G	4.580e^-4	0.952	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7275116	2L_7275116_SNP [dm3] 2L_7275116_SNP [dm6]	A	G	4.582e^-4	0.952	INTRON Wnt4	TF binding site BDTNP1_TFBS_da
2L	4809578	2L_4809578_SNP [dm3] 2L_4809578_SNP [dm6]	C	G	4.586e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4454005	2L_4454005_SNP [dm3] 2L_4454005_SNP [dm6]	T	C	4.596e^-4	0.952	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7173895	3L_7173895_SNP [dm3] 3L_7180795_SNP [dm6]	A	G	4.600e^-4	0.952	INTRON Dscam2	TF binding site mE1_TFBS_inv
2L	14131000	2L_14131000_SNP [dm3] 2L_14131000_SNP [dm6]	T	A	4.609e^-4	0.952	INTERGENIC
2L	17591012	2L_17591012_SNP [dm3] 2L_17591012_SNP [dm6]	C	A	4.610e^-4	0.952	UTR_3_PRIME Oli DOWNSTREAM CG6870
3L	8705163	3L_8705163_SNP [dm3] 3L_8712063_SNP [dm6]	G	T	4.610e^-4	0.952	INTERGENIC	regulatory region REDfly_CRMs
3R	21535925	3R_21535925_SNP [dm3] 3R_25710203_SNP [dm6]	C	G	4.613e^-4	0.952	INTRON LpR2
2R	14506794	2R_14506794_SNP [dm3] 2R_18619289_SNP [dm6]	G	A	4.634e^-4	0.952	UTR_5_PRIME CG5493 DOWNSTREAM CG5327	TF binding site BDTNP1_TFBS_z
2L	6200348	2L_6200348_SNP [dm3] 2L_6200348_SNP [dm6]	C	T	4.634e^-4	0.952	INTRON CG34380	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	9439282	2R_9439282_SNP [dm3] 2R_13551777_SNP [dm6]	A	C	4.637e^-4	0.952	UPSTREAM CG33156 INTRON CG33156
3R	12581868	3R_12581868_SNP [dm3] 3R_16756146_SNP [dm6]	G	A	4.651e^-4	0.952	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15733039	3R_15733039_DEL [dm3] 3R_19907317_DEL [dm6]	GATTTCATTCGCTTATCTTC...	G	4.654e^-4	0.952	UPSTREAM CR45047 INTRON RhoGAP92B
2R	10929901	2R_10929901_SNP [dm3] 2R_15042396_SNP [dm6]	C	T	4.660e^-4	0.952	DOWNSTREAM hbs INTERGENIC
X	4408000	X_4408000_SNP [dm3] X_4513967_SNP [dm6]	T	A	4.662e^-4	0.952	INTRON CR32773
X	4955035	X_4955035_SNP [dm3] X_5061002_SNP [dm6]	T	C	4.663e^-4	0.952	INTRON CR44833 & 1 other
2L	4611186	2L_4611186_DEL [dm3] 2L_4611186_DEL [dm6]	TA	T	4.665e^-4	0.952	INTRON dp
2R	15265636	2R_15265636_SNP [dm3] 2R_19378131_SNP [dm6]	G	A	4.667e^-4	0.952	INTRON CG10062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21151191	3L_21151191_SNP [dm3] 3L_21158091_SNP [dm6]	T	C	4.669e^-4	0.952	INTRON Ac78C
3L	6018565	3L_6018565_SNP [dm3] 3L_6025465_SNP [dm6]	T	C	4.675e^-4	0.952	SYNONYMOUS_CODING PVRAP
3L	8302138	3L_8302138_SNP [dm3] 3L_8309038_SNP [dm6]	A	T	4.689e^-4	0.952	UPSTREAM BI-1 DOWNSTREAM CR45409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15678694	3R_15678694_SNP [dm3] 3R_19852972_SNP [dm6]	C	A	4.697e^-4	0.952	UTR_3_PRIME CG4662 DOWNSTREAM Ire1 INTRON CG4662
2L	12286053	2L_12286053_SNP [dm3] 2L_12286053_SNP [dm6]	A	C	4.717e^-4	0.952	INTRON aret
3L	2375442	3L_2375442_SNP [dm3] 3L_2375442_SNP [dm6]	G	A	4.719e^-4	0.952	NON_SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_sens
X	11903661	X_11903661_SNP [dm3] X_12009628_SNP [dm6]	C	T	4.719e^-4	0.952	DOWNSTREAM CG1492 INTRON CG1806
3R	10761702	3R_10761702_MNP [dm3] 3R_14935980_MNP [dm6]	ATT	CCC	4.719e^-4	0.952	INTERGENIC
3R	10761707	3R_10761707_INS [dm3] 3R_14935985_INS [dm6]	C	CATATC	4.719e^-4	0.952	INTERGENIC
3R	10761709	3R_10761709_SNP [dm3] 3R_14935987_SNP [dm6]	C	A	4.719e^-4	0.952	INTERGENIC
3R	10761710	3R_10761710_SNP [dm3] 3R_14935988_SNP [dm6]	C	T	4.719e^-4	0.952	INTERGENIC
3R	10761716	3R_10761716_SNP [dm3] 3R_14935994_SNP [dm6]	T	C	4.719e^-4	0.952	INTERGENIC
3R	22185182	3R_22185182_SNP [dm3] 3R_26359460_SNP [dm6]	C	T	4.728e^-4	0.952	INTRON CG33970
X	20973919	X_20973919_SNP [dm3] X_21102892_SNP [dm6]	T	G	4.734e^-4	0.952	UPSTREAM CG15446 INTRON stg1 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	16793811	2L_16793811_SNP [dm3] 2L_16793811_SNP [dm6]	C	T	4.735e^-4	0.952	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2L	2057190	2L_2057190_SNP [dm3] 2L_2057190_SNP [dm6]	G	A	4.741e^-4	0.952	INTRON Or22c
3R	15551887	3R_15551887_SNP [dm3] 3R_19726165_SNP [dm6]	T	C	4.743e^-4	0.952	INTERGENIC
2R	11221073	2R_11221073_SNP [dm3] 2R_15333568_SNP [dm6]	T	A	4.747e^-4	0.952	INTRON Hr51	TF binding site mE1_TFBS_chinmo
3R	23413311	3R_23413311_SNP [dm3] 3R_27587589_SNP [dm6]	T	C	4.747e^-4	0.952	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3809603	3L_3809603_SNP [dm3] 3L_3809603_SNP [dm6]	G	T	4.749e^-4	0.952	SYNONYMOUS_CODING CG32262 DOWNSTREAM IntS10 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	19283305	3R_19283305_SNP [dm3] 3R_23457583_SNP [dm6]	G	A	4.752e^-4	0.952	INTRON CG4374	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15582927	3R_15582927_DEL [dm3] 3R_19757205_DEL [dm6]	AA	A	4.753e^-4	0.952	INTRON GluClalpha
2R	1098468	2R_1098468_SNP [dm3] 2R_5210963_SNP [dm6]	T	A	4.754e^-4	0.952	INTRON Nipped-A
2R	10929817	2R_10929817_SNP [dm3] 2R_15042312_SNP [dm6]	C	A	4.759e^-4	0.952	DOWNSTREAM hbs INTERGENIC
2R	1671847	2R_1671847_SNP [dm3] 2R_5784342_SNP [dm6]	G	T	4.761e^-4	0.952	INTERGENIC
2L	4713141	2L_4713141_SNP [dm3] 2L_4713141_SNP [dm6]	A	G	4.763e^-4	0.952	INTRON CG34351
2L	12286047	2L_12286047_SNP [dm3] 2L_12286047_SNP [dm6]	G	T	4.768e^-4	0.952	INTRON aret
X	17231548	X_17231548_SNP [dm3] X_17337515_SNP [dm6]	A	T	4.788e^-4	0.952	INTERGENIC
2R	8268485	2R_8268485_SNP [dm3] 2R_12380980_SNP [dm6]	A	C	4.795e^-4	0.952	UPSTREAM CG13155 INTERGENIC
2L	4653728	2L_4653728_SNP [dm3] 2L_4653728_SNP [dm6]	G	A	4.802e^-4	0.952	DOWNSTREAM CG3355 INTERGENIC
2L	20939319	2L_20939319_SNP [dm3] 2L_20939319_SNP [dm6]	T	G	4.809e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3517606	X_3517606_SNP [dm3] X_3623573_SNP [dm6]	T	C	4.810e^-4	0.952	INTRON AstA-R1
3R	16383664	3R_16383664_SNP [dm3] 3R_20557942_SNP [dm6]	C	T	4.812e^-4	0.952	START_GAINED CG5180 UTR_5_PRIME CG5180 UPSTREAM CG5180 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	15751626	3R_15751626_SNP [dm3] 3R_19925904_SNP [dm6]	A	T	4.812e^-4	0.952	UPSTREAM CG4462 DOWNSTREAM CG4459 INTERGENIC
3R	25137675	3R_25137675_DEL [dm3] 3R_29311953_DEL [dm6]	CCGCTTAATTTTC...	C	4.816e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_sens
2L	10241088	2L_10241088_SNP [dm3] 2L_10241088_SNP [dm6]	A	G	4.819e^-4	0.952	INTRON me31B	TF binding site mE1_TFBS_sens
2R	19603736	2R_19603736_SNP [dm3] 2R_23716213_SNP [dm6]	T	C	4.823e^-4	0.952	INTRON Sesn	TF binding site BDTNP1_TFBS_dl
3R	23471695	3R_23471695_SNP [dm3] 3R_27645973_SNP [dm6]	T	G	4.828e^-4	0.952	INTRON tau	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	891819	2R_891819_SNP [dm3] 2R_5004314_SNP [dm6]	T	A	4.829e^-4	0.952	INTRON Ir41a	transposable element FlyBase
3L	21397835	3L_21397835_SNP [dm3] 3L_21404735_SNP [dm6]	A	C	4.830e^-4	0.952	DOWNSTREAM sa INTRON rgn
3L	12852549	3L_12852549_SNP [dm3] 3L_12859449_SNP [dm6]	A	G	4.840e^-4	0.952	SYNONYMOUS_CODING CG32107
3R	12183649	3R_12183649_SNP [dm3] 3R_16357927_SNP [dm6]	C	T	4.847e^-4	0.952	UTR_3_PRIME CG17931 UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other
X	18412650	X_18412650_SNP [dm3] X_18518617_SNP [dm6]	A	C	4.856e^-4	0.952	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
2L	4599708	2L_4599708_DEL [dm3] 2L_4599708_DEL [dm6]	ACGAAGGCAGGCTACCTAT...	C	4.858e^-4	0.952	INTRON dp
2L	20435373	2L_20435373_SNP [dm3] 2L_20435373_SNP [dm6]	A	G	4.864e^-4	0.952	INTRON CG31688
2L	7964826	2L_7964826_SNP [dm3] 2L_7964826_SNP [dm6]	G	A	4.866e^-4	0.952	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12471547	3R_12471547_SNP [dm3] 3R_16645825_SNP [dm6]	C	T	4.868e^-4	0.952	SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
2R	8694609	2R_8694609_SNP [dm3] 2R_12807104_SNP [dm6]	T	C	4.869e^-4	0.952	UTR_3_PRIME CG17580
X	12284953	X_12284953_INS [dm3] X_12390920_INS [dm6]	T	TAAAACATTTTCTCAGGATG...	4.882e^-4	0.952	INTERGENIC
2R	19603733	2R_19603733_SNP [dm3] 2R_23716210_SNP [dm6]	T	C	4.884e^-4	0.952	INTRON Sesn	TF binding site BDTNP1_TFBS_dl
X	4798622	X_4798622_SNP [dm3] X_4904589_SNP [dm6]	C	T	4.888e^-4	0.952	SYNONYMOUS_CODING CG42594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7490005	2L_7490005_SNP [dm3] 2L_7490005_SNP [dm6]	C	G	4.906e^-4	0.952	INTRON Ziz
3R	26876163	3R_26876163_SNP [dm3] 3R_31050441_SNP [dm6]	C	A	4.908e^-4	0.952	DOWNSTREAM mir-4948 INTRON Aph-4	TF binding site mE1_TFBS_cad
2R	15066112	2R_15066112_DEL [dm3] 2R_19178607_DEL [dm6]	CC	C	4.912e^-4	0.952	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16936353	2L_16936353_SNP [dm3] 2L_16936353_SNP [dm6]	C	A	4.919e^-4	0.952	INTERGENIC
3R	25147643	3R_25147643_SNP [dm3] 3R_29321921_SNP [dm6]	A	G	4.929e^-4	0.952	INTERGENIC
2R	16725327	2R_16725327_SNP [dm3] 2R_20837822_SNP [dm6]	C	T	4.939e^-4	0.952	EXON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	8299205	2L_8299205_SNP [dm3] 2L_8299205_SNP [dm6]	C	T	4.939e^-4	0.952	INTRON Btk29A
3L	19345200	3L_19345200_DEL [dm3] 3L_19352100_DEL [dm6]	GT	A	4.939e^-4	0.952	INTRON CG32206
2L	13695065	2L_13695065_SNP [dm3] 2L_13695065_SNP [dm6]	A	T	4.942e^-4	0.952	INTRON CG31814
3L	11011147	3L_11011147_SNP [dm3] 3L_11018047_SNP [dm6]	G	A	4.947e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	12284934	X_12284934_SNP [dm3] X_12390901_SNP [dm6]	T	C	4.947e^-4	0.952	INTERGENIC
X	15184051	X_15184051_SNP [dm3] X_15290018_SNP [dm6]	A	G	4.948e^-4	0.952	UPSTREAM CR44664 DOWNSTREAM CR44663 INTERGENIC
2L	13756931	2L_13756931_SNP [dm3] 2L_13756931_SNP [dm6]	C	T	4.954e^-4	0.952	DOWNSTREAM CR44846 INTRON TM9SF4
3L	10732626	3L_10732626_SNP [dm3] 3L_10739526_SNP [dm6]	A	T	4.954e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5842223	2R_5842223_SNP [dm3] 2R_9954718_SNP [dm6]	A	T	4.958e^-4	0.952	INTRON Mef2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12653206	2L_12653206_SNP [dm3] 2L_12653206_SNP [dm6]	G	C	4.969e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6536377	2R_6536377_SNP [dm3] 2R_10648872_SNP [dm6]	T	C	4.977e^-4	0.952	UPSTREAM CG12934 DOWNSTREAM Elp2 INTERGENIC
2R	14573354	2R_14573354_SNP [dm3] 2R_18685849_SNP [dm6]	A	T	4.978e^-4	0.952	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_chinmo
2L	20464825	2L_20464825_SNP [dm3] 2L_20464825_SNP [dm6]	T	C	4.997e^-4	0.952	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11451428	2L_11451428_SNP [dm3] 2L_11451428_SNP [dm6]	G	T	4.999e^-4	0.952	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	2280122	X_2280122_SNP [dm3] X_2386089_SNP [dm6]	A	T	5.005e^-4	0.952	INTRON PsGEF	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1816688	2R_1816688_SNP [dm3] 2R_5929183_SNP [dm6]	C	T	5.008e^-4	0.952	SYNONYMOUS_CODING CG43366
3L	12587747	3L_12587747_SNP [dm3] 3L_12594647_SNP [dm6]	C	T	5.015e^-4	0.952	SYNONYMOUS_CODING ara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18862203	2R_18862203_SNP [dm3] 2R_22974680_SNP [dm6]	T	C	5.021e^-4	0.952	INTERGENIC
2L	18587232	2L_18587232_SNP [dm3] 2L_18587232_SNP [dm6]	T	A	5.027e^-4	0.952	INTRON Pde11
2R	10504920	2R_10504920_SNP [dm3] 2R_14617415_SNP [dm6]	G	A	5.028e^-4	0.952	INTRON Su_var_2-HP2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4599806	2L_4599806_SNP [dm3] 2L_4599806_SNP [dm6]	C	T	5.035e^-4	0.952	INTRON dp
3L	13654318	3L_13654318_SNP [dm3] 3L_13661218_SNP [dm6]	A	G	5.039e^-4	0.952	INTRON bru-3
3L	6846815	3L_6846815_SNP [dm3] 3L_6853715_SNP [dm6]	T	C	5.045e^-4	0.952	INTERGENIC
3R	10775839	3R_10775839_SNP [dm3] 3R_14950117_SNP [dm6]	C	A	5.046e^-4	0.952	INTERGENIC
3L	13345882	3L_13345882_SNP [dm3] 3L_13352782_SNP [dm6]	C	T	5.055e^-4	0.952	INTRON CG17687
2L	19811919	2L_19811919_SNP [dm3] 2L_19811919_SNP [dm6]	G	A	5.057e^-4	0.952	UPSTREAM snRNA:U2:38ABb DOWNSTREAM snRNA:U5:38ABa INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14428101	3L_14428101_SNP [dm3] 3L_14435001_SNP [dm6]	A	G	5.068e^-4	0.952	INTRON bbg
3R	13888892	3R_13888892_SNP [dm3] 3R_18063170_SNP [dm6]	A	T	5.071e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	1221892	X_1221892_SNP [dm3] X_1327859_SNP [dm6]	T	C	5.074e^-4	0.952	SYNONYMOUS_CODING fs_1_N
3L	10513703	3L_10513703_SNP [dm3] 3L_10520603_SNP [dm6]	T	C	5.078e^-4	0.952	INTRON A2bp1
3R	21123682	3R_21123682_SNP [dm3] 3R_25297960_SNP [dm6]	G	A	5.084e^-4	0.952	UTR_3_PRIME CG31288 UPSTREAM CG31097	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5599734	X_5599734_SNP [dm3] X_5705701_SNP [dm6]	A	T	5.097e^-4	0.952	INTRON CG4096	TF binding site mE1_TFBS_run
3R	15892071	3R_15892071_INS [dm3] 3R_20066349_INS [dm6]	A	AA	5.101e^-4	0.952	INTERGENIC
2L	3680547	2L_3680547_SNP [dm3] 2L_3680547_SNP [dm6]	G	A	5.104e^-4	0.952	INTRON CG34340
2R	13106590	2R_13106590_SNP [dm3] 2R_17219085_SNP [dm6]	C	T	5.104e^-4	0.952	INTRON mbl
X	19427504	X_19427504_SNP [dm3] X_19533471_SNP [dm6]	C	T	5.110e^-4	0.952	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1439349	3L_1439349_SNP [dm3] 3L_1439349_SNP [dm6]	C	T	5.110e^-4	0.952	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	12133081	2L_12133081_SNP [dm3] 2L_12133081_SNP [dm6]	C	T	5.110e^-4	0.952	INTRON rho-6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11225353	3L_11225353_SNP [dm3] 3L_11232253_SNP [dm6]	T	A	5.113e^-4	0.952	UPSTREAM CR45405 DOWNSTREAM Ir68a INTERGENIC
2L	4951579	2L_4951579_SNP [dm3] 2L_4951579_SNP [dm6]	C	T	5.120e^-4	0.952	UPSTREAM Jon25Biii DOWNSTREAM Jon25Bii INTERGENIC
3R	23828398	3R_23828398_SNP [dm3] 3R_28002676_SNP [dm6]	A	G	5.122e^-4	0.952	INTERGENIC
2R	2088535	2R_2088535_SNP [dm3] 2R_6201030_SNP [dm6]	G	A	5.125e^-4	0.952	INTRON CG8335	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12286052	2L_12286052_SNP [dm3] 2L_12286052_SNP [dm6]	G	C	5.125e^-4	0.952	INTRON aret
2L	2792775	2L_2792775_SNP [dm3] 2L_2792775_SNP [dm6]	A	T	5.134e^-4	0.952	UTR_3_PRIME Syt1 INTRON Syt1
3R	23905238	3R_23905238_SNP [dm3] 3R_28079516_SNP [dm6]	A	T	5.136e^-4	0.952	INTRON CG34362
2L	7131290	2L_7131290_SNP [dm3] 2L_7131290_SNP [dm6]	C	A	5.137e^-4	0.952	INTRON Pvf3
3L	11629082	3L_11629082_INS [dm3] 3L_11635982_INS [dm6]	A	AA	5.139e^-4	0.952	INTRON CG32091
3L	9350120	3L_9350120_SNP [dm3] 3L_9357020_SNP [dm6]	C	A	5.145e^-4	0.952	INTRON UGP
3R	12484710	3R_12484710_SNP [dm3] 3R_16658988_SNP [dm6]	A	G	5.151e^-4	0.952	SYNONYMOUS_CODING Ubx
2L	4047378	2L_4047378_SNP [dm3] 2L_4047378_SNP [dm6]	T	C	5.154e^-4	0.952	INTRON ed
2L	12139514	2L_12139514_SNP [dm3] 2L_12139514_SNP [dm6]	C	T	5.156e^-4	0.952	INTRON Gr33a
3R	20318811	3R_20318811_SNP [dm3] 3R_24493089_SNP [dm6]	A	T	5.160e^-4	0.952	INTERGENIC
3L	19343063	3L_19343063_SNP [dm3] 3L_19349963_SNP [dm6]	C	G	5.190e^-4	0.952	INTRON CG32206
3R	10760789	3R_10760789_SNP [dm3] 3R_14935067_SNP [dm6]	C	A	5.196e^-4	0.952	INTERGENIC
X	20875934	X_20875934_SNP [dm3] X_21004907_SNP [dm6]	T	C	5.205e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	23913749	3R_23913749_SNP [dm3] 3R_28088027_SNP [dm6]	A	G	5.207e^-4	0.952	UTR_3_PRIME CG34362	TF binding site BDTNP1_TFBS_twi
2R	14666108	2R_14666108_SNP [dm3] 2R_18778603_SNP [dm6]	G	T	5.210e^-4	0.952	INTERGENIC
2R	1620891	2R_1620891_INS [dm3] 2R_5733386_INS [dm6]	T	TACAGATTCGT...	5.227e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11369616	3L_11369616_SNP [dm3] 3L_11376516_SNP [dm6]	G	A	5.233e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15807256	2L_15807256_SNP [dm3] 2L_15807256_SNP [dm6]	C	A	5.236e^-4	0.952	EXON CR44602

By genomic position
Variant impact
Gene name

cv_WakingActivity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results