DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.609e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.001217

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	10.5339	0.0052

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2321 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10324237	2R_10324237_SNP [dm3] 2R_14436732_SNP [dm6]	G	A	3.623e^-7	0.189	INTRON Oaz
2R	10324673	2R_10324673_SNP [dm3] 2R_14437168_SNP [dm6]	A	G	7.784e^-7	0.189	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23158236	3R_23158236_SNP [dm3] 3R_27332514_SNP [dm6]	A	T	9.360e^-7	0.189	INTERGENIC
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	1.041e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	4586105	X_4586105_SNP [dm3] X_4692072_SNP [dm6]	A	G	1.160e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3L	7624737	3L_7624737_SNP [dm3] 3L_7631637_SNP [dm6]	C	A	1.336e^-6	0.189	INTRON CG33275
3R	17577684	3R_17577684_SNP [dm3] 3R_21751962_SNP [dm6]	C	G	1.375e^-6	0.189	SYNONYMOUS_CODING CG31233	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13939139	3R_13939139_DEL [dm3] 3R_18113417_DEL [dm6]	TGT	T	1.566e^-6	0.189	INTRON sr
3L	11436134	3L_11436134_SNP [dm3] 3L_11443034_SNP [dm6]	A	T	1.601e^-6	0.189	INTERGENIC
3R	14161625	3R_14161625_SNP [dm3] 3R_18335903_SNP [dm6]	T	G	1.887e^-6	0.189	INTRON CG15803
3R	20123159	3R_20123159_SNP [dm3] 3R_24297437_SNP [dm6]	G	A	1.947e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	4584155	X_4584155_SNP [dm3] X_4690122_SNP [dm6]	G	A	1.958e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20122986	3R_20122986_SNP [dm3] 3R_24297264_SNP [dm6]	C	A	2.120e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	20122988	3R_20122988_SNP [dm3] 3R_24297266_SNP [dm6]	G	A	2.120e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	20123124	3R_20123124_SNP [dm3] 3R_24297402_SNP [dm6]	C	A	2.120e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	20123126	3R_20123126_MNP [dm3] 3R_24297404_MNP [dm6]	CTA	AGG	2.120e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	16533655	3L_16533655_SNP [dm3] 3L_16540555_SNP [dm6]	C	T	2.154e^-6	0.189	INTRON CG43373
2R	6631668	2R_6631668_SNP [dm3] 2R_10744163_SNP [dm6]	G	A	2.308e^-6	0.189	INTRON CG33144
3R	20123148	3R_20123148_SNP [dm3] 3R_24297426_SNP [dm6]	T	A	2.337e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	20123027	3R_20123027_INS [dm3] 3R_24297305_INS [dm6]	A	ACAAGAGTGCAAATGCATCG...	2.349e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	4586084	X_4586084_DEL [dm3] X_4692051_DEL [dm6]	TT	T	2.505e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3R	20123136	3R_20123136_SNP [dm3] 3R_24297414_SNP [dm6]	T	G	2.596e^-6	0.189	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	4586128	X_4586128_SNP [dm3] X_4692095_SNP [dm6]	C	T	2.610e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	4588150	X_4588150_SNP [dm3] X_4694117_SNP [dm6]	G	T	2.644e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5313819	3R_5313819_SNP [dm3] 3R_9488097_SNP [dm6]	A	T	2.672e^-6	0.189	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
3R	14161621	3R_14161621_SNP [dm3] 3R_18335899_SNP [dm6]	A	G	2.774e^-6	0.189	INTRON CG15803
X	4584320	X_4584320_DEL [dm3] X_4690287_DEL [dm6]	TAAAG	A	2.916e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12860727	3L_12860727_SNP [dm3] 3L_12867627_SNP [dm6]	T	C	2.939e^-6	0.189	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11435993	3L_11435993_SNP [dm3] 3L_11442893_SNP [dm6]	T	A	3.007e^-6	0.189	INTERGENIC
X	4588388	X_4588388_SNP [dm3] X_4694355_SNP [dm6]	A	G	3.018e^-6	0.189	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16533780	3L_16533780_SNP [dm3] 3L_16540680_SNP [dm6]	T	A	3.845e^-6	0.227	INTRON CG43373
3L	16533818	3L_16533818_SNP [dm3] 3L_16540718_SNP [dm6]	T	A	3.871e^-6	0.227	INTRON CG43373
2R	17001692	2R_17001692_SNP [dm3] 2R_21114187_SNP [dm6]	T	C	4.513e^-6	0.256	INTRON ktub
3R	23231713	3R_23231713_SNP [dm3] 3R_27405991_SNP [dm6]	C	T	4.765e^-6	0.263	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23158230	3R_23158230_SNP [dm3] 3R_27332508_SNP [dm6]	T	C	4.959e^-6	0.266	INTERGENIC
3L	12860775	3L_12860775_SNP [dm3] 3L_12867675_SNP [dm6]	C	A	5.887e^-6	0.307	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4585403	X_4585403_SNP [dm3] X_4691370_SNP [dm6]	T	C	6.342e^-6	0.321	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10324567	2R_10324567_SNP [dm3] 2R_14437062_SNP [dm6]	T	C	7.364e^-6	0.346	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16759214	3L_16759214_SNP [dm3] 3L_16766114_SNP [dm6]	C	T	7.369e^-6	0.346	UTR_5_PRIME Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13638708	3R_13638708_SNP [dm3] 3R_17812986_SNP [dm6]	A	G	7.373e^-6	0.346	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	11436006	3L_11436006_SNP [dm3] 3L_11442906_SNP [dm6]	G	T	7.763e^-6	0.35	INTERGENIC
X	11854197	X_11854197_SNP [dm3] X_11960164_SNP [dm6]	T	C	7.988e^-6	0.35	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4584286	X_4584286_SNP [dm3] X_4690253_SNP [dm6]	A	G	8.172e^-6	0.35	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4624225	2R_4624225_SNP [dm3] 2R_8736720_SNP [dm6]	A	T	8.200e^-6	0.35	UPSTREAM CG42615 INTRON CG8740
X	15359253	X_15359253_SNP [dm3] X_15465220_SNP [dm6]	G	A	9.078e^-6	0.364	UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other
3R	22732520	3R_22732520_DEL [dm3] 3R_26906798_DEL [dm6]	AAT	TG	9.085e^-6	0.364	INTRON T48	regulatory region REDfly_CRMs
3R	24627526	3R_24627526_SNP [dm3] 3R_28801804_SNP [dm6]	G	A	9.112e^-6	0.364	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4584414	X_4584414_SNP [dm3] X_4690381_SNP [dm6]	A	G	9.456e^-6	0.369	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4584116	X_4584116_INS [dm3] X_4690083_INS [dm6]	A	AA	9.832e^-6	0.376	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4583793	X_4583793_SNP [dm3] X_4689760_SNP [dm6]	A	T	1.022e^-5	0.382	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14161626	3R_14161626_SNP [dm3] 3R_18335904_SNP [dm6]	A	T	1.039e^-5	0.382	INTRON CG15803
3R	20123111	3R_20123111_INS [dm3] 3R_24297389_INS [dm6]	A	GT	1.083e^-5	0.384	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	4585380	X_4585380_SNP [dm3] X_4691347_SNP [dm6]	C	G	1.215e^-5	0.384	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8759585	X_8759585_SNP [dm3] X_8865552_SNP [dm6]	A	G	1.218e^-5	0.384	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	24627542	3R_24627542_SNP [dm3] 3R_28801820_SNP [dm6]	A	T	1.280e^-5	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4583768	X_4583768_SNP [dm3] X_4689735_SNP [dm6]	C	T	1.288e^-5	0.384	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14716610	3L_14716610_SNP [dm3] 3L_14723510_SNP [dm6]	T	C	1.311e^-5	0.384	INTRON ome
2R	10344248	2R_10344248_SNP [dm3] 2R_14456743_SNP [dm6]	T	C	1.331e^-5	0.384	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10348157	2R_10348157_SNP [dm3] 2R_14460652_SNP [dm6]	C	T	1.346e^-5	0.384	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	12709135	3L_12709135_SNP [dm3] 3L_12716035_SNP [dm6]	G	A	1.351e^-5	0.384	INTERGENIC
3R	21876717	3R_21876717_SNP [dm3] 3R_26050995_SNP [dm6]	G	C	1.359e^-5	0.384	SYNONYMOUS_CODING Exo84	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22732614	3R_22732614_SNP [dm3] 3R_26906892_SNP [dm6]	G	A	1.367e^-5	0.384	INTRON T48	regulatory region REDfly_CRMs
3R	20123180	3R_20123180_INS [dm3] 3R_24297458_INS [dm6]	T	TT	1.398e^-5	0.384	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	4681359	3L_4681359_DEL [dm3] 3L_4681359_DEL [dm6]	TT	T	1.401e^-5	0.384	UTR_5_PRIME axo INTRON axo
2R	10344260	2R_10344260_SNP [dm3] 2R_14456755_SNP [dm6]	A	G	1.413e^-5	0.384	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4583641	X_4583641_DEL [dm3] X_4689608_DEL [dm6]	TT	T	1.417e^-5	0.384	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	1.443e^-5	0.384	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21503438	3R_21503438_SNP [dm3] 3R_25677716_SNP [dm6]	A	T	1.466e^-5	0.384	SYNONYMOUS_CODING CG4730 UPSTREAM CR45225 & 1 other DOWNSTREAM Lgr3	TF binding site mE1_TFBS_sens
3R	5305845	3R_5305845_SNP [dm3] 3R_9480123_SNP [dm6]	G	A	1.492e^-5	0.384	INTRON CG16779
3R	14161651	3R_14161651_SNP [dm3] 3R_18335929_SNP [dm6]	A	T	1.495e^-5	0.384	INTRON CG15803
3R	14161654	3R_14161654_INS [dm3] 3R_18335932_INS [dm6]	A	ATCCGTC	1.495e^-5	0.384	INTRON CG15803
2L	10298497	2L_10298497_SNP [dm3] 2L_10298497_SNP [dm6]	T	G	1.503e^-5	0.384	UPSTREAM CYLD DOWNSTREAM CR44968 INTRON CYLD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	23315487	3R_23315487_SNP [dm3] 3R_27489765_SNP [dm6]	G	A	1.504e^-5	0.384	UTR_3_PRIME Gr98a
X	4583727	X_4583727_SNP [dm3] X_4689694_SNP [dm6]	C	G	1.520e^-5	0.384	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11884331	2R_11884331_INS [dm3] 2R_15996826_INS [dm6]	T	TT	1.534e^-5	0.384	INTRON ATPCL
X	4581219	X_4581219_DEL [dm3] X_4687186_DEL [dm6]	ATCTCA	A	1.604e^-5	0.384	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	10344245	2R_10344245_SNP [dm3] 2R_14456740_SNP [dm6]	T	C	1.618e^-5	0.384	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14161660	3R_14161660_SNP [dm3] 3R_18335938_SNP [dm6]	T	G	1.631e^-5	0.384	INTRON CG15803
3R	15665485	3R_15665485_SNP [dm3] 3R_19839763_SNP [dm6]	G	A	1.643e^-5	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	19502894	2R_19502894_SNP [dm3] 2R_23615371_SNP [dm6]	G	A	1.648e^-5	0.384	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8833238	3L_8833238_SNP [dm3] 3L_8840138_SNP [dm6]	C	T	1.665e^-5	0.384	INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
2L	5665504	2L_5665504_SNP [dm3] 2L_5665504_SNP [dm6]	G	A	1.678e^-5	0.384	INTRON Hsp60C
X	4585460	X_4585460_SNP [dm3] X_4691427_SNP [dm6]	G	C	1.698e^-5	0.384	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10313946	2L_10313946_SNP [dm3] 2L_10313946_SNP [dm6]	A	C	1.729e^-5	0.386	SYNONYMOUS_CODING CG5384 UPSTREAM CG4972	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	4583177	X_4583177_SNP [dm3] X_4689144_SNP [dm6]	T	C	1.764e^-5	0.389	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3R	14161606	3R_14161606_SNP [dm3] 3R_18335884_SNP [dm6]	T	G	1.817e^-5	0.396	INTRON CG15803
X	4587298	X_4587298_DEL [dm3] X_4693265_DEL [dm6]	AAGCCCTGA	A	1.892e^-5	0.404	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14161618	3R_14161618_SNP [dm3] 3R_18335896_SNP [dm6]	A	T	1.916e^-5	0.404	INTRON CG15803
3R	14161601	3R_14161601_SNP [dm3] 3R_18335879_SNP [dm6]	A	G	1.919e^-5	0.404	INTRON CG15803
3R	14161615	3R_14161615_SNP [dm3] 3R_18335893_SNP [dm6]	T	A	1.937e^-5	0.404	INTRON CG15803
X	19171471	X_19171471_SNP [dm3] X_19277438_SNP [dm6]	G	A	2.029e^-5	0.417	SYNONYMOUS_CODING CG8028 UPSTREAM CG32537 & 1 other
3R	21372361	3R_21372361_DEL [dm3] 3R_25546639_DEL [dm6]	TGGGC	T	2.046e^-5	0.417	INTRON msi
X	4583645	X_4583645_SNP [dm3] X_4689612_SNP [dm6]	A	G	2.069e^-5	0.417	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4585531	X_4585531_INS [dm3] X_4691498_INS [dm6]	G	GAGTGTGTG	2.168e^-5	0.432	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25552992	3R_25552992_SNP [dm3] 3R_29727270_SNP [dm6]	T	C	2.203e^-5	0.435	INTRON Kul	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2981345	3L_2981345_SNP [dm3] 3L_2981345_SNP [dm6]	C	G	2.266e^-5	0.443	NON_SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10653187	3L_10653187_SNP [dm3] 3L_10660087_SNP [dm6]	T	A	2.299e^-5	0.444	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15608580	3R_15608580_SNP [dm3] 3R_19782858_SNP [dm6]	T	G	2.321e^-5	0.444	SYNONYMOUS_CODING CG11407 UPSTREAM CG11453
3R	14161593	3R_14161593_DEL [dm3] 3R_18335871_DEL [dm6]	AC	A	2.464e^-5	0.465	INTRON CG15803
3R	14161687	3R_14161687_DEL [dm3] 3R_18335965_DEL [dm6]	CATTATTCTGTC...	C	2.478e^-5	0.465	INTRON CG15803
2R	8872787	2R_8872787_SNP [dm3] 2R_12985282_SNP [dm6]	A	G	2.508e^-5	0.466	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	5152366	3R_5152366_SNP [dm3] 3R_9326644_SNP [dm6]	C	T	2.537e^-5	0.466	INTRON CG8861
3L	7226262	3L_7226262_SNP [dm3] 3L_7233162_SNP [dm6]	T	C	2.688e^-5	0.484	INTERGENIC
3R	16823304	3R_16823304_SNP [dm3] 3R_20997582_SNP [dm6]	T	G	2.702e^-5	0.484	INTRON Calx
X	4582882	X_4582882_SNP [dm3] X_4688849_SNP [dm6]	C	G	2.711e^-5	0.484	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	12709216	3L_12709216_SNP [dm3] 3L_12716116_SNP [dm6]	T	G	2.761e^-5	0.485	INTERGENIC
X	4584782	X_4584782_INS [dm3] X_4690749_INS [dm6]	T	TT	2.767e^-5	0.485	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14161592	3R_14161592_SNP [dm3] 3R_18335870_SNP [dm6]	A	T	2.821e^-5	0.487	INTRON CG15803
2R	11884311	2R_11884311_SNP [dm3] 2R_15996806_SNP [dm6]	G	C	2.834e^-5	0.487	INTRON ATPCL
3R	10522828	3R_10522828_SNP [dm3] 3R_14697106_SNP [dm6]	T	G	2.858e^-5	0.487	UTR_5_PRIME Meltrin DOWNSTREAM kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	4192911	X_4192911_SNP [dm3] X_4298878_SNP [dm6]	G	A	2.923e^-5	0.491	INTERGENIC
X	15359256	X_15359256_SNP [dm3] X_15465223_SNP [dm6]	G	A	2.975e^-5	0.491	UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other
3R	24618123	3R_24618123_SNP [dm3] 3R_28792401_SNP [dm6]	T	G	2.983e^-5	0.491	DOWNSTREAM intr INTERGENIC
2R	4489956	2R_4489956_SNP [dm3] 2R_8602451_SNP [dm6]	G	A	2.983e^-5	0.491	INTRON rgr	TF binding site mE1_TFBS_HSA
3L	14714019	3L_14714019_SNP [dm3] 3L_14720919_SNP [dm6]	A	G	3.016e^-5	0.491	INTRON ome
3R	23314122	3R_23314122_SNP [dm3] 3R_27488400_SNP [dm6]	A	G	3.086e^-5	0.491	SYNONYMOUS_CODING Gr98a
3R	14161551	3R_14161551_SNP [dm3] 3R_18335829_SNP [dm6]	C	T	3.090e^-5	0.491	INTRON CG15803
3R	13811326	3R_13811326_SNP [dm3] 3R_17985604_SNP [dm6]	A	T	3.107e^-5	0.491	INTRON cpo
2L	9809747	2L_9809747_SNP [dm3] 2L_9809747_SNP [dm6]	T	C	3.118e^-5	0.491	INTRON nAChRalpha6
2L	7181407	2L_7181407_SNP [dm3] 2L_7181407_SNP [dm6]	C	T	3.170e^-5	0.495	UPSTREAM CG4495 INTERGENIC
3R	14161597	3R_14161597_SNP [dm3] 3R_18335875_SNP [dm6]	G	T	3.205e^-5	0.497	INTRON CG15803
3R	1216702	3R_1216702_DEL [dm3] 3R_5390980_DEL [dm6]	TAGAGGATTAGTTAAA...	T	3.307e^-5	0.505	INTRON kkv	regulatory region REDfly_CRMs
2L	12519792	2L_12519792_SNP [dm3] 2L_12519792_SNP [dm6]	A	T	3.310e^-5	0.505	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	4587280	X_4587280_SNP [dm3] X_4693247_SNP [dm6]	C	A	3.337e^-5	0.505	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4585404	X_4585404_SNP [dm3] X_4691371_SNP [dm6]	T	A	3.389e^-5	0.507	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20123072	3R_20123072_SNP [dm3] 3R_24297350_SNP [dm6]	A	T	3.407e^-5	0.507	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	4587238	X_4587238_DEL [dm3] X_4693205_DEL [dm6]	ATGATTAGCTTTA...	A	3.431e^-5	0.507	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	4681350	3L_4681350_SNP [dm3] 3L_4681350_SNP [dm6]	A	C	3.466e^-5	0.508	UTR_5_PRIME axo INTRON axo
2R	8360660	2R_8360660_SNP [dm3] 2R_12473155_SNP [dm6]	G	A	3.521e^-5	0.511	NON_SYNONYMOUS_CODING CG8550
X	18363109	X_18363109_SNP [dm3] X_18469076_SNP [dm6]	C	T	3.551e^-5	0.511	INTRON CG32547
3R	5321577	3R_5321577_SNP [dm3] 3R_9495855_SNP [dm6]	G	A	3.566e^-5	0.511	NON_SYNONYMOUS_CODING CG8147	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8363477	2R_8363477_SNP [dm3] 2R_12475972_SNP [dm6]	C	A	3.594e^-5	0.511	INTRON Dh44-R2
3R	17635109	3R_17635109_SNP [dm3] 3R_21809387_SNP [dm6]	A	G	3.809e^-5	0.537	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9824884	2L_9824884_SNP [dm3] 2L_9824884_SNP [dm6]	A	T	3.922e^-5	0.549	INTRON nAChRalpha6
3R	25553322	3R_25553322_SNP [dm3] 3R_29727600_SNP [dm6]	T	G	4.016e^-5	0.554	INTRON Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10302142	3L_10302142_SNP [dm3] 3L_10309042_SNP [dm6]	A	T	4.021e^-5	0.554	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14161582	3R_14161582_SNP [dm3] 3R_18335860_SNP [dm6]	T	G	4.062e^-5	0.554	INTRON CG15803
2L	7321310	2L_7321310_SNP [dm3] 2L_7321310_SNP [dm6]	C	A	4.078e^-5	0.554	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14161548	3R_14161548_INS [dm3] 3R_18335826_INS [dm6]	C	TAT	4.210e^-5	0.561	INTRON CG15803
2L	11375312	2L_11375312_SNP [dm3] 2L_11375312_SNP [dm6]	C	T	4.220e^-5	0.561	INTERGENIC	regulatory region REDfly_CRMs
2L	904788	2L_904788_SNP [dm3] 2L_904788_SNP [dm6]	A	G	4.269e^-5	0.561	DOWNSTREAM CR45261 INTERGENIC
3R	25553372	3R_25553372_SNP [dm3] 3R_29727650_SNP [dm6]	A	C	4.280e^-5	0.561	SPLICE_SITE_REGION Kul INTRON Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23315508	3R_23315508_SNP [dm3] 3R_27489786_SNP [dm6]	A	G	4.313e^-5	0.561	UTR_3_PRIME Gr98a
X	2476963	X_2476963_SNP [dm3] X_2582930_SNP [dm6]	T	A	4.338e^-5	0.561	DOWNSTREAM CG13760 INTRON CG13759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10088899	2R_10088899_SNP [dm3] 2R_14201394_SNP [dm6]	T	A	4.353e^-5	0.561	UTR_3_PRIME Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_chinmo
3R	14161534	3R_14161534_SNP [dm3] 3R_18335812_SNP [dm6]	G	A	4.375e^-5	0.561	INTRON CG15803
X	8720305	X_8720305_SNP [dm3] X_8826272_SNP [dm6]	G	T	4.480e^-5	0.561	INTERGENIC
2R	10545412	2R_10545412_SNP [dm3] 2R_14657907_SNP [dm6]	T	G	4.485e^-5	0.561	SYNONYMOUS_CODING Adgf-E	TF binding site mE1_TFBS_cad
2L	4004599	2L_4004599_SNP [dm3] 2L_4004599_SNP [dm6]	G	A	4.554e^-5	0.561	UPSTREAM CG15422 DOWNSTREAM CG34176 INTERGENIC
X	4587553	X_4587553_SNP [dm3] X_4693520_SNP [dm6]	G	A	4.568e^-5	0.561	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3494664	3L_3494664_SNP [dm3] 3L_3494664_SNP [dm6]	T	C	4.577e^-5	0.561	INTRON CG42324
X	2476924	X_2476924_SNP [dm3] X_2582891_SNP [dm6]	G	A	4.633e^-5	0.561	DOWNSTREAM CG13760 INTRON CG13759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14935942	2R_14935942_SNP [dm3] 2R_19048437_SNP [dm6]	A	C	4.661e^-5	0.561	INTERGENIC
3L	2396333	3L_2396333_SNP [dm3] 3L_2396333_SNP [dm6]	C	T	4.678e^-5	0.561	INTRON CG45186
3R	20123050	3R_20123050_SNP [dm3] 3R_24297328_SNP [dm6]	A	G	4.703e^-5	0.561	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	13466100	3L_13466100_SNP [dm3] 3L_13473000_SNP [dm6]	C	T	4.779e^-5	0.561	INTRON CG10089
3L	12950269	3L_12950269_SNP [dm3] 3L_12957169_SNP [dm6]	A	T	4.813e^-5	0.561	INTERGENIC
X	8185298	X_8185298_SNP [dm3] X_8291265_SNP [dm6]	A	C	4.817e^-5	0.561	INTRON nAChRalpha3
3R	23159379	3R_23159379_SNP [dm3] 3R_27333657_SNP [dm6]	C	T	4.838e^-5	0.561	INTERGENIC
X	2243102	X_2243102_SNP [dm3] X_2349069_SNP [dm6]	A	G	4.843e^-5	0.561	SYNONYMOUS_CODING ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8813812	X_8813812_SNP [dm3] X_8919779_SNP [dm6]	T	C	4.848e^-5	0.561	INTRON rdgA EXON CR44111
X	4585372	X_4585372_SNP [dm3] X_4691339_SNP [dm6]	C	G	4.918e^-5	0.561	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17260618	2R_17260618_SNP [dm3] 2R_21373113_SNP [dm6]	C	T	4.944e^-5	0.561	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2476931	X_2476931_INS [dm3] X_2582898_INS [dm6]	A	TTATGCAGGC	4.951e^-5	0.561	DOWNSTREAM CG13760 INTRON CG13759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	4599885	X_4599885_SNP [dm3] X_4705852_SNP [dm6]	A	G	4.966e^-5	0.561	DOWNSTREAM l_1_G0334 INTRON CG7024
3R	10895980	3R_10895980_INS [dm3] 3R_15070258_INS [dm6]	T	TG	4.973e^-5	0.561	INTRON dpr9
X	4582275	X_4582275_SNP [dm3] X_4688242_SNP [dm6]	T	A	5.023e^-5	0.561	UTR_5_PRIME ctp INTRON ctp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7321299	2L_7321299_SNP [dm3] 2L_7321299_SNP [dm6]	A	C	5.023e^-5	0.561	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26876558	3R_26876558_SNP [dm3] 3R_31050836_SNP [dm6]	T	C	5.080e^-5	0.561	SYNONYMOUS_CODING Aph-4 DOWNSTREAM mir-4948	TF binding site mE1_TFBS_cad
X	2243135	X_2243135_SNP [dm3] X_2349102_SNP [dm6]	A	G	5.094e^-5	0.561	SYNONYMOUS_CODING ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2304501	2L_2304501_SNP [dm3] 2L_2304501_SNP [dm6]	A	G	5.112e^-5	0.561	INTERGENIC
3L	13161135	3L_13161135_SNP [dm3] 3L_13168035_SNP [dm6]	T	G	5.260e^-5	0.567	INTERGENIC
2R	18510065	2R_18510065_SNP [dm3] 2R_22622560_SNP [dm6]	C	A	5.305e^-5	0.567	INTRON CG33143
3L	12950264	3L_12950264_SNP [dm3] 3L_12957164_SNP [dm6]	G	C	5.315e^-5	0.567	INTERGENIC
3R	10948722	3R_10948722_SNP [dm3] 3R_15123000_SNP [dm6]	C	T	5.318e^-5	0.567	INTRON CG42788
3R	10523090	3R_10523090_SNP [dm3] 3R_14697368_SNP [dm6]	T	A	5.319e^-5	0.567	UPSTREAM Meltrin DOWNSTREAM kibra INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12139514	2L_12139514_SNP [dm3] 2L_12139514_SNP [dm6]	C	T	5.408e^-5	0.573	INTRON Gr33a
2L	2304500	2L_2304500_SNP [dm3] 2L_2304500_SNP [dm6]	T	C	5.550e^-5	0.582	INTERGENIC
X	8322549	X_8322549_SNP [dm3] X_8428516_SNP [dm6]	A	G	5.573e^-5	0.582	NON_SYNONYMOUS_CODING Trf2	TF binding site mE1_TFBS_inv
3R	22732477	3R_22732477_SNP [dm3] 3R_26906755_SNP [dm6]	A	G	5.589e^-5	0.582	INTRON T48	regulatory region REDfly_CRMs
2R	6986950	2R_6986950_SNP [dm3] 2R_11099445_SNP [dm6]	T	C	5.662e^-5	0.587	INTRON luna
X	8709021	X_8709021_SNP [dm3] X_8814988_SNP [dm6]	A	T	5.758e^-5	0.589	INTERGENIC
X	4584394	X_4584394_SNP [dm3] X_4690361_SNP [dm6]	A	T	5.779e^-5	0.589	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2981323	3L_2981323_SNP [dm3] 3L_2981323_SNP [dm6]	A	G	5.784e^-5	0.589	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17235953	3R_17235953_SNP [dm3] 3R_21410231_SNP [dm6]	C	A	5.811e^-5	0.589	UTR_3_PRIME lbl DOWNSTREAM CheB93b	TF binding site mE1_TFBS_cad
3L	4681395	3L_4681395_SNP [dm3] 3L_4681395_SNP [dm6]	G	C	5.907e^-5	0.594	START_GAINED axo UTR_5_PRIME axo INTRON axo
2R	10344490	2R_10344490_INS [dm3] 2R_14456985_INS [dm6]	G	GAGTG	5.954e^-5	0.594	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
X	20791995	X_20791995_SNP [dm3] X_20920968_SNP [dm6]	T	G	5.959e^-5	0.594	INTRON shakB
2L	12291624	2L_12291624_DEL [dm3] 2L_12291624_DEL [dm6]	TGTTTTCTGAATAC...	A	6.049e^-5	0.599	INTRON aret
3R	10522854	3R_10522854_SNP [dm3] 3R_14697132_SNP [dm6]	G	A	6.100e^-5	0.599	START_GAINED Meltrin UTR_5_PRIME Meltrin DOWNSTREAM kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17634845	3R_17634845_SNP [dm3] 3R_21809123_SNP [dm6]	A	C	6.120e^-5	0.599	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5983788	2R_5983788_SNP [dm3] 2R_10096283_SNP [dm6]	T	A	6.135e^-5	0.599	UTR_3_PRIME CG2269 UPSTREAM Jra	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
X	8509167	X_8509167_SNP [dm3] X_8615134_SNP [dm6]	G	T	6.245e^-5	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	11853984	3L_11853984_SNP [dm3] 3L_11860884_SNP [dm6]	G	A	6.301e^-5	0.599	INTRON CG44837
X	4580998	X_4580998_SNP [dm3] X_4686965_SNP [dm6]	A	G	6.323e^-5	0.599	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14161679	3R_14161679_SNP [dm3] 3R_18335957_SNP [dm6]	T	C	6.354e^-5	0.599	INTRON CG15803
2R	10349631	2R_10349631_SNP [dm3] 2R_14462126_SNP [dm6]	T	G	6.357e^-5	0.599	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10345517	2R_10345517_SNP [dm3] 2R_14458012_SNP [dm6]	A	C	6.364e^-5	0.599	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	27083586	3R_27083586_SNP [dm3] 3R_31257864_SNP [dm6]	C	G	6.391e^-5	0.599	INTRON CG3669
2R	4493351	2R_4493351_DEL [dm3] 2R_8605846_DEL [dm6]	CCTC	C	6.408e^-5	0.599	INTRON rgr	TF binding site mE1_TFBS_cad
3R	17212347	3R_17212347_SNP [dm3] 3R_21386625_SNP [dm6]	C	A	6.427e^-5	0.599	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22732528	3R_22732528_DEL [dm3] 3R_26906806_DEL [dm6]	AGCCTG	A	6.512e^-5	0.599	INTRON T48	regulatory region REDfly_CRMs
2L	7181367	2L_7181367_SNP [dm3] 2L_7181367_SNP [dm6]	G	A	6.520e^-5	0.599	UPSTREAM CG4495 INTERGENIC
2R	6883039	2R_6883039_SNP [dm3] 2R_10995534_SNP [dm6]	A	T	6.545e^-5	0.599	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11948957	3L_11948957_SNP [dm3] 3L_11955857_SNP [dm6]	A	G	6.574e^-5	0.599	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2L	5457344	2L_5457344_SNP [dm3] 2L_5457344_SNP [dm6]	G	T	6.577e^-5	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2L	12416964	2L_12416964_SNP [dm3] 2L_12416964_SNP [dm6]	A	C	6.630e^-5	0.601	INTRON vir-1
3R	24627414	3R_24627414_SNP [dm3] 3R_28801692_SNP [dm6]	T	C	6.753e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14161554	3R_14161554_SNP [dm3] 3R_18335832_SNP [dm6]	A	T	6.764e^-5	0.603	INTRON CG15803
2R	7060426	2R_7060426_SNP [dm3] 2R_11172921_SNP [dm6]	T	C	6.784e^-5	0.603	UPSTREAM CG13229 & 1 other INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	8545743	3L_8545743_SNP [dm3] 3L_8552643_SNP [dm6]	G	A	6.785e^-5	0.603	INTRON rhea
3R	17937207	3R_17937207_SNP [dm3] 3R_22111485_SNP [dm6]	C	A	6.833e^-5	0.604	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19502951	2R_19502951_SNP [dm3] 2R_23615428_SNP [dm6]	A	T	6.890e^-5	0.607	UPSTREAM CG4019 INTRON CG17664	TF binding site mE1_TFBS_HSA
3L	6706181	3L_6706181_INS [dm3] 3L_6713081_INS [dm6]	G	GG	6.969e^-5	0.611	DOWNSTREAM ple INTERGENIC
2R	19499750	2R_19499750_SNP [dm3] 2R_23612227_SNP [dm6]	A	T	7.051e^-5	0.615	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15642133	3R_15642133_SNP [dm3] 3R_19816411_SNP [dm6]	A	C	7.089e^-5	0.616	INTRON bnl
3R	15608573	3R_15608573_SNP [dm3] 3R_19782851_SNP [dm6]	A	G	7.177e^-5	0.618	NON_SYNONYMOUS_CODING CG11407 UPSTREAM CG11453
2L	11375326	2L_11375326_SNP [dm3] 2L_11375326_SNP [dm6]	A	C	7.276e^-5	0.618	INTERGENIC	regulatory region REDfly_CRMs
2R	6735353	2R_6735353_SNP [dm3] 2R_10847848_SNP [dm6]	G	A	7.351e^-5	0.618	INTRON CG30015
3R	22732632	3R_22732632_SNP [dm3] 3R_26906910_SNP [dm6]	C	T	7.380e^-5	0.618	INTRON T48	regulatory region REDfly_CRMs
3R	25553672	3R_25553672_SNP [dm3] 3R_29727950_SNP [dm6]	G	A	7.390e^-5	0.618	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8388993	3R_8388993_SNP [dm3] 3R_12563271_SNP [dm6]	T	A	7.467e^-5	0.618	INTRON Octbeta2R
X	21351348	X_21351348_SNP [dm3] X_21480321_SNP [dm6]	A	T	7.477e^-5	0.618	UPSTREAM CR45509 DOWNSTREAM CR45510 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12291652	2L_12291652_SNP [dm3] 2L_12291652_SNP [dm6]	A	T	7.521e^-5	0.618	INTRON aret
3R	13529274	3R_13529274_INS [dm3] 3R_17703552_INS [dm6]	A	AA	7.535e^-5	0.618	INTRON osa
3R	3550663	3R_3550663_SNP [dm3] 3R_7724941_SNP [dm6]	C	A	7.581e^-5	0.618	DOWNSTREAM CG2616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13529175	3R_13529175_SNP [dm3] 3R_17703453_SNP [dm6]	T	C	7.591e^-5	0.618	INTRON osa
3R	22732592	3R_22732592_DEL [dm3] 3R_26906870_DEL [dm6]	TA	T	7.594e^-5	0.618	INTRON T48	regulatory region REDfly_CRMs
2R	10324415	2R_10324415_SNP [dm3] 2R_14436910_SNP [dm6]	A	C	7.682e^-5	0.618	INTRON Oaz	TF binding site mE1_TFBS_HSA
3L	2983060	3L_2983060_SNP [dm3] 3L_2983060_SNP [dm6]	C	T	7.716e^-5	0.618	INTRON CG2107
3R	10528650	3R_10528650_SNP [dm3] 3R_14702928_SNP [dm6]	C	T	7.720e^-5	0.618	SYNONYMOUS_CODING kibra	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	9204415	2R_9204415_SNP [dm3] 2R_13316910_SNP [dm6]	A	T	7.753e^-5	0.618	INTERGENIC
2L	7321126	2L_7321126_SNP [dm3] 2L_7321126_SNP [dm6]	A	G	7.811e^-5	0.618	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16023294	2R_16023294_INS [dm3] 2R_20135789_INS [dm6]	A	AA	7.817e^-5	0.618	INTERGENIC
3R	4859909	3R_4859909_SNP [dm3] 3R_9034187_SNP [dm6]	T	C	7.844e^-5	0.618	UPSTREAM neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	4588313	X_4588313_SNP [dm3] X_4694280_SNP [dm6]	C	T	7.912e^-5	0.618	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4998367	X_4998367_SNP [dm3] X_5104334_SNP [dm6]	C	T	7.920e^-5	0.618	INTRON rg & 1 other
3R	9731802	3R_9731802_SNP [dm3] 3R_13906080_SNP [dm6]	C	A	7.934e^-5	0.618	INTERGENIC
X	9123817	X_9123817_SNP [dm3] X_9229784_SNP [dm6]	G	A	7.955e^-5	0.618	SYNONYMOUS_CODING CG12121 DOWNSTREAM Gr8a
2L	10298413	2L_10298413_SNP [dm3] 2L_10298413_SNP [dm6]	G	C	8.015e^-5	0.618	UPSTREAM CYLD INTRON CYLD EXON CR44968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	14161649	3R_14161649_SNP [dm3] 3R_18335927_SNP [dm6]	A	G	8.016e^-5	0.618	INTRON CG15803
3L	4681389	3L_4681389_SNP [dm3] 3L_4681389_SNP [dm6]	C	A	8.046e^-5	0.618	UTR_5_PRIME axo INTRON axo
X	4594218	X_4594218_SNP [dm3] X_4700185_SNP [dm6]	C	T	8.057e^-5	0.618	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl
X	4581037	X_4581037_SNP [dm3] X_4687004_SNP [dm6]	C	A	8.106e^-5	0.618	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12097186	2L_12097186_SNP [dm3] 2L_12097186_SNP [dm6]	T	A	8.126e^-5	0.618	SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	7181378	2L_7181378_SNP [dm3] 2L_7181378_SNP [dm6]	G	A	8.128e^-5	0.618	UPSTREAM CG4495 INTERGENIC
3L	13133144	3L_13133144_DEL [dm3] 3L_13140044_DEL [dm6]	TTA	T	8.140e^-5	0.618	INTERGENIC
3R	10523024	3R_10523024_SNP [dm3] 3R_14697302_SNP [dm6]	C	T	8.168e^-5	0.618	UPSTREAM Meltrin DOWNSTREAM kibra INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16821903	3L_16821903_SNP [dm3] 3L_16828803_SNP [dm6]	A	T	8.333e^-5	0.619	START_GAINED CG13024 UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18625197	3R_18625197_SNP [dm3] 3R_22799475_SNP [dm6]	C	T	8.356e^-5	0.619	INTERGENIC
X	19132706	X_19132706_SNP [dm3] X_19238673_SNP [dm6]	A	T	8.386e^-5	0.619	INTRON CG14196
3R	8580726	3R_8580726_SNP [dm3] 3R_12755004_SNP [dm6]	A	T	8.391e^-5	0.619	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	4585496	X_4585496_SNP [dm3] X_4691463_SNP [dm6]	T	C	8.404e^-5	0.619	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10331657	3R_10331657_SNP [dm3] 3R_14505935_SNP [dm6]	C	A	8.411e^-5	0.619	INTRON CR44177
2L	12291747	2L_12291747_SNP [dm3] 2L_12291747_SNP [dm6]	A	G	8.415e^-5	0.619	INTRON aret
2L	13338462	2L_13338462_SNP [dm3] 2L_13338462_SNP [dm6]	A	G	8.513e^-5	0.621	INTERGENIC
3R	9971090	3R_9971090_SNP [dm3] 3R_14145368_SNP [dm6]	G	A	8.536e^-5	0.621	INTERGENIC
X	4584429	X_4584429_SNP [dm3] X_4690396_SNP [dm6]	T	G	8.571e^-5	0.621	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4584663	X_4584663_SNP [dm3] X_4690630_SNP [dm6]	G	T	8.582e^-5	0.621	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11235116	2L_11235116_SNP [dm3] 2L_11235116_SNP [dm6]	C	A	8.639e^-5	0.623	DOWNSTREAM snoRNA:Me18S-G642 INTRON ab
2R	8888052	2R_8888052_SNP [dm3] 2R_13000547_SNP [dm6]	T	C	8.671e^-5	0.623	INTRON Su_z_2
X	18375851	X_18375851_SNP [dm3] X_18481818_SNP [dm6]	C	T	8.701e^-5	0.623	SYNONYMOUS_CODING Hayan DOWNSTREAM CR45714 INTRON Hayan	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4582742	X_4582742_SNP [dm3] X_4688709_SNP [dm6]	A	C	8.781e^-5	0.624	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	12817354	3L_12817354_SNP [dm3] 3L_12824254_SNP [dm6]	C	T	8.794e^-5	0.624	SYNONYMOUS_CODING CG42588 DOWNSTREAM CG10960
X	21351423	X_21351423_SNP [dm3] X_21480396_SNP [dm6]	T	C	8.823e^-5	0.624	UPSTREAM CR45509 DOWNSTREAM CR45510 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17616954	3L_17616954_SNP [dm3] 3L_17623854_SNP [dm6]	G	A	8.901e^-5	0.624	INTRON CG7510	TF binding site mE1_TFBS_cnc
X	4583587	X_4583587_SNP [dm3] X_4689554_SNP [dm6]	T	C	8.917e^-5	0.624	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4580481	X_4580481_SNP [dm3] X_4686448_SNP [dm6]	A	C	8.939e^-5	0.624	UTR_5_PRIME Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	17173216	2R_17173216_SNP [dm3] 2R_21285711_SNP [dm6]	G	T	8.949e^-5	0.624	UTR_3_PRIME CG10505 DOWNSTREAM MFS16
X	19132991	X_19132991_SNP [dm3] X_19238958_SNP [dm6]	G	A	9.064e^-5	0.626	INTRON CG14196	TF binding site mE1_TFBS_sens
X	8759541	X_8759541_SNP [dm3] X_8865508_SNP [dm6]	T	G	9.099e^-5	0.626	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	17212345	3R_17212345_SNP [dm3] 3R_21386623_SNP [dm6]	G	A	9.100e^-5	0.626	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	4587230	X_4587230_SNP [dm3] X_4693197_SNP [dm6]	A	T	9.165e^-5	0.626	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	19865231	2L_19865231_SNP [dm3] 2L_19865231_SNP [dm6]	A	T	9.176e^-5	0.626	UPSTREAM sick INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13175540	X_13175540_SNP [dm3] X_13281507_SNP [dm6]	C	T	9.198e^-5	0.626	INTRON HDAC4
X	4587505	X_4587505_SNP [dm3] X_4693472_SNP [dm6]	T	G	9.216e^-5	0.626	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5304781	3R_5304781_DEL [dm3] 3R_9479059_DEL [dm6]	GTCGGTGGG	G	9.393e^-5	0.632	INTRON CG16779
X	8716384	X_8716384_SNP [dm3] X_8822351_SNP [dm6]	C	A	9.402e^-5	0.632	INTERGENIC
3R	18301999	3R_18301999_SNP [dm3] 3R_22476277_SNP [dm6]	G	A	9.403e^-5	0.632	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl
X	8643892	X_8643892_SNP [dm3] X_8749859_SNP [dm6]	T	A	9.565e^-5	0.641	INTERGENIC
2L	21336623	2L_21336623_SNP [dm3] 2L_21336623_SNP [dm6]	C	T	9.597e^-5	0.641	INTRON dimm	transposable element FlyBase
3R	25554756	3R_25554756_SNP [dm3] 3R_29729034_SNP [dm6]	C	T	9.635e^-5	0.641	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6638708	2R_6638708_SNP [dm3] 2R_10751203_SNP [dm6]	T	C	9.701e^-5	0.642	INTRON CG33144
2R	17117375	2R_17117375_DEL [dm3] 2R_21229870_DEL [dm6]	CTCCACC	C	9.725e^-5	0.642	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17946522	2R_17946522_SNP [dm3] 2R_22059017_SNP [dm6]	C	T	9.753e^-5	0.642	UTR_3_PRIME CG13501	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6644508	2L_6644508_SNP [dm3] 2L_6644508_SNP [dm6]	G	T	9.792e^-5	0.642	INTRON CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7226264	3L_7226264_SNP [dm3] 3L_7233164_SNP [dm6]	C	G	9.840e^-5	0.642	INTERGENIC
3R	20272595	3R_20272595_SNP [dm3] 3R_24446873_SNP [dm6]	G	A	9.858e^-5	0.642	INTRON nAChRalpha1
2R	6738355	2R_6738355_SNP [dm3] 2R_10850850_SNP [dm6]	A	G	9.948e^-5	0.645	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
X	4590209	X_4590209_SNP [dm3] X_4696176_SNP [dm6]	T	C	1.001e^-4	0.645	INTRON ctp
X	4591347	X_4591347_SNP [dm3] X_4697314_SNP [dm6]	G	A	1.004e^-4	0.645	INTRON ctp
3R	8388992	3R_8388992_SNP [dm3] 3R_12563270_SNP [dm6]	C	T	1.004e^-4	0.645	INTRON Octbeta2R
X	1732593	X_1732593_SNP [dm3] X_1838560_SNP [dm6]	T	A	1.007e^-4	0.645	INTRON CG42666
3L	6247531	3L_6247531_SNP [dm3] 3L_6254431_SNP [dm6]	C	T	1.017e^-4	0.648	INTRON Best2	TF binding site mE1_TFBS_HSA
3R	5306470	3R_5306470_SNP [dm3] 3R_9480748_SNP [dm6]	C	T	1.022e^-4	0.648	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12291756	2L_12291756_SNP [dm3] 2L_12291756_SNP [dm6]	T	A	1.023e^-4	0.648	INTRON aret
2L	11672816	2L_11672816_SNP [dm3] 2L_11672816_SNP [dm6]	C	T	1.027e^-4	0.649	INTERGENIC
2L	9195967	2L_9195967_SNP [dm3] 2L_9195967_SNP [dm6]	C	T	1.033e^-4	0.65	INTRON tai
2R	9797399	2R_9797399_SNP [dm3] 2R_13909894_SNP [dm6]	G	T	1.042e^-4	0.653	INTRON shot
3R	14161686	3R_14161686_SNP [dm3] 3R_18335964_SNP [dm6]	T	G	1.055e^-4	0.655	INTRON CG15803
3R	11773061	3R_11773061_SNP [dm3] 3R_15947339_SNP [dm6]	A	T	1.056e^-4	0.655	INTRON Sap47
2L	16915947	2L_16915947_SNP [dm3] 2L_16915947_SNP [dm6]	C	T	1.058e^-4	0.655	SYNONYMOUS_CODING tweek
3R	3550698	3R_3550698_SNP [dm3] 3R_7724976_SNP [dm6]	T	C	1.060e^-4	0.655	DOWNSTREAM CG2616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2731079	3L_2731079_SNP [dm3] 3L_2731079_SNP [dm6]	G	A	1.062e^-4	0.655	INTRON Mrtf
3R	7171341	3R_7171341_DEL [dm3] 3R_11345619_DEL [dm6]	TT	T	1.068e^-4	0.656	DOWNSTREAM KP78a & 1 other INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13638783	3R_13638783_SNP [dm3] 3R_17813061_SNP [dm6]	T	G	1.076e^-4	0.658	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	12355846	2R_12355846_SNP [dm3] 2R_16468341_SNP [dm6]	A	G	1.079e^-4	0.658	NON_SYNONYMOUS_CODING CheB53b DOWNSTREAM CheB53a
2L	3786866	2L_3786866_DEL [dm3] 2L_3786866_DEL [dm6]	TATTGT	T	1.084e^-4	0.658	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8366837	2R_8366837_SNP [dm3] 2R_12479332_SNP [dm6]	G	A	1.093e^-4	0.658	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17634875	3R_17634875_SNP [dm3] 3R_21809153_SNP [dm6]	T	G	1.099e^-4	0.658	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3756312	3L_3756312_SNP [dm3] 3L_3756312_SNP [dm6]	C	A	1.100e^-4	0.658	INTRON CG32264	TF binding site mE1_TFBS_Trl
3L	22507100	3L_22507100_SNP [dm3] 3L_22514000_SNP [dm6]	A	T	1.100e^-4	0.658	INTERGENIC
3R	25553357	3R_25553357_SNP [dm3] 3R_29727635_SNP [dm6]	A	G	1.105e^-4	0.658	INTRON Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3786774	2L_3786774_SNP [dm3] 2L_3786774_SNP [dm6]	C	T	1.106e^-4	0.658	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	4587495	X_4587495_DEL [dm3] X_4693462_DEL [dm6]	GGAAGGGA	G	1.108e^-4	0.658	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10344355	2R_10344355_SNP [dm3] 2R_14456850_SNP [dm6]	G	A	1.109e^-4	0.658	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
3L	13466120	3L_13466120_SNP [dm3] 3L_13473020_SNP [dm6]	A	T	1.121e^-4	0.658	INTRON CG10089
3R	25554681	3R_25554681_SNP [dm3] 3R_29728959_SNP [dm6]	G	C	1.124e^-4	0.658	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17634716	3R_17634716_SNP [dm3] 3R_21808994_SNP [dm6]	G	C	1.128e^-4	0.658	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20046805	3L_20046805_SNP [dm3] 3L_20053705_SNP [dm6]	T	G	1.130e^-4	0.658	INTERGENIC
3R	20722014	3R_20722014_SNP [dm3] 3R_24896292_SNP [dm6]	G	C	1.136e^-4	0.658	SYNONYMOUS_CODING CG11069
2R	10450745	2R_10450745_SNP [dm3] 2R_14563240_SNP [dm6]	C	A	1.141e^-4	0.658	UPSTREAM ttv INTRON ttv
2L	10298419	2L_10298419_SNP [dm3] 2L_10298419_SNP [dm6]	A	C	1.145e^-4	0.658	UPSTREAM CYLD DOWNSTREAM CR44968 INTRON CYLD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
2L	12519802	2L_12519802_SNP [dm3] 2L_12519802_SNP [dm6]	G	A	1.151e^-4	0.658	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	3786729	2L_3786729_SNP [dm3] 2L_3786729_SNP [dm6]	G	A	1.158e^-4	0.658	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	3786760	2L_3786760_SNP [dm3] 2L_3786760_SNP [dm6]	T	C	1.159e^-4	0.658	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14935594	2R_14935594_SNP [dm3] 2R_19048089_SNP [dm6]	A	C	1.166e^-4	0.658	INTERGENIC
2L	12519795	2L_12519795_DEL [dm3] 2L_12519795_DEL [dm6]	AA	A	1.170e^-4	0.658	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	3786804	2L_3786804_SNP [dm3] 2L_3786804_SNP [dm6]	C	T	1.182e^-4	0.658	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23233448	3R_23233448_SNP [dm3] 3R_27407726_SNP [dm6]	T	C	1.183e^-4	0.658	INTRON side
2R	9939305	2R_9939305_SNP [dm3] 2R_14051800_SNP [dm6]	T	C	1.186e^-4	0.658	INTRON mam
2R	18318322	2R_18318322_SNP [dm3] 2R_22430817_SNP [dm6]	C	T	1.189e^-4	0.658	INTERGENIC
2R	15686301	2R_15686301_SNP [dm3] 2R_19798796_SNP [dm6]	C	T	1.194e^-4	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19846833	2L_19846833_SNP [dm3] 2L_19846833_SNP [dm6]	G	C	1.194e^-4	0.658	INTRON sick	TF binding site BDTNP1_TFBS_twi
X	5186598	X_5186598_SNP [dm3] X_5292565_SNP [dm6]	T	C	1.194e^-4	0.658	INTERGENIC
3R	22732613	3R_22732613_SNP [dm3] 3R_26906891_SNP [dm6]	T	G	1.199e^-4	0.658	INTRON T48	regulatory region REDfly_CRMs
3R	23315488	3R_23315488_SNP [dm3] 3R_27489766_SNP [dm6]	G	T	1.202e^-4	0.658	UTR_3_PRIME Gr98a
3L	12851263	3L_12851263_SNP [dm3] 3L_12858163_SNP [dm6]	T	C	1.204e^-4	0.658	UTR_3_PRIME CG32107 DOWNSTREAM Ent3
3R	23159905	3R_23159905_SNP [dm3] 3R_27334183_SNP [dm6]	T	A	1.205e^-4	0.658	INTERGENIC
3R	7833137	3R_7833137_SNP [dm3] 3R_12007415_SNP [dm6]	T	C	1.205e^-4	0.658	DOWNSTREAM KLHL18 INTERGENIC
2R	10342677	2R_10342677_SNP [dm3] 2R_14455172_SNP [dm6]	G	A	1.207e^-4	0.658	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8363478	2R_8363478_SNP [dm3] 2R_12475973_SNP [dm6]	C	A	1.215e^-4	0.658	INTRON Dh44-R2
3R	25554678	3R_25554678_SNP [dm3] 3R_29728956_SNP [dm6]	T	G	1.220e^-4	0.658	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6891027	X_6891027_SNP [dm3] X_6996994_SNP [dm6]	G	A	1.222e^-4	0.658	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4372667	3R_4372667_SNP [dm3] 3R_8546945_SNP [dm6]	T	G	1.225e^-4	0.658	DOWNSTREAM CR45575 EXON CR45574
X	10223337	X_10223337_SNP [dm3] X_10329304_SNP [dm6]	A	C	1.228e^-4	0.658	SYNONYMOUS_CODING Gip DOWNSTREAM CG2909 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7305268	2L_7305268_SNP [dm3] 2L_7305268_SNP [dm6]	T	C	1.232e^-4	0.658	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3787158	2L_3787158_SNP [dm3] 2L_3787158_SNP [dm6]	A	G	1.240e^-4	0.658	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8229182	2L_8229182_SNP [dm3] 2L_8229182_SNP [dm6]	C	A	1.242e^-4	0.658	INTRON Pvr
3R	7281751	3R_7281751_SNP [dm3] 3R_11456029_SNP [dm6]	G	T	1.245e^-4	0.658	INTRON CG17230 & 1 other
3L	18387388	3L_18387388_SNP [dm3] 3L_18394288_SNP [dm6]	A	T	1.250e^-4	0.658	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19936169	3L_19936169_SNP [dm3] 3L_19943069_SNP [dm6]	A	T	1.250e^-4	0.658	INTRON Ac76E
3L	10298092	3L_10298092_SNP [dm3] 3L_10304992_SNP [dm6]	C	A	1.256e^-4	0.658	INTERGENIC
3L	6888255	3L_6888255_SNP [dm3] 3L_6895155_SNP [dm6]	T	C	1.259e^-4	0.658	INTERGENIC
2R	6638702	2R_6638702_SNP [dm3] 2R_10751197_SNP [dm6]	G	C	1.259e^-4	0.658	INTRON CG33144
3R	9670497	3R_9670497_SNP [dm3] 3R_13844775_SNP [dm6]	C	T	1.260e^-4	0.658	INTERGENIC
X	8347926	X_8347926_SNP [dm3] X_8453893_SNP [dm6]	A	C	1.262e^-4	0.658	INTRON org-1
2L	6772324	2L_6772324_SNP [dm3] 2L_6772324_SNP [dm6]	T	A	1.264e^-4	0.658	INTRON CG11321
2R	14836831	2R_14836831_DEL [dm3] 2R_18949326_DEL [dm6]	ATA	A	1.264e^-4	0.658	INTRON sano	TF binding site BDTNP1_TFBS_twi
3R	24082778	3R_24082778_SNP [dm3] 3R_28257056_SNP [dm6]	C	A	1.267e^-4	0.658	INTERGENIC
2L	12519794	2L_12519794_SNP [dm3] 2L_12519794_SNP [dm6]	A	T	1.268e^-4	0.658	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	27111409	3R_27111409_SNP [dm3] 3R_31285687_SNP [dm6]	T	A	1.271e^-4	0.658	INTERGENIC
3R	18625182	3R_18625182_SNP [dm3] 3R_22799460_SNP [dm6]	A	C	1.276e^-4	0.658	INTERGENIC
2L	3635696	2L_3635696_SNP [dm3] 2L_3635696_SNP [dm6]	T	G	1.279e^-4	0.658	INTRON for
3R	13529159	3R_13529159_SNP [dm3] 3R_17703437_SNP [dm6]	T	G	1.280e^-4	0.658	INTRON osa
2R	10659612	2R_10659612_SNP [dm3] 2R_14772107_SNP [dm6]	T	G	1.287e^-4	0.658	SYNONYMOUS_CODING BEAF-32 UPSTREAM CG42254 DOWNSTREAM kn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13638918	3R_13638918_SNP [dm3] 3R_17813196_SNP [dm6]	A	C	1.290e^-4	0.658	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	18733108	2R_18733108_SNP [dm3] 2R_22845585_SNP [dm6]	T	A	1.292e^-4	0.658	UPSTREAM CG3649 INTERGENIC
3R	10761281	3R_10761281_SNP [dm3] 3R_14935559_SNP [dm6]	T	C	1.297e^-4	0.659	INTERGENIC
X	19571499	X_19571499_SNP [dm3] X_19677466_SNP [dm6]	G	A	1.307e^-4	0.662	SYNONYMOUS_CODING dome	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13755324	2L_13755324_SNP [dm3] 2L_13755324_SNP [dm6]	C	T	1.310e^-4	0.662	INTRON CR44846 & 1 other
3R	23313955	3R_23313955_SNP [dm3] 3R_27488233_SNP [dm6]	G	A	1.319e^-4	0.663	NON_SYNONYMOUS_CODING Gr98a
3R	15608577	3R_15608577_SNP [dm3] 3R_19782855_SNP [dm6]	G	T	1.330e^-4	0.663	SYNONYMOUS_CODING CG11407 UPSTREAM CG11453
X	4998489	X_4998489_INS [dm3] X_5104456_INS [dm6]	T	TT	1.337e^-4	0.663	INTRON rg & 1 other
2R	20173288	2R_20173288_SNP [dm3] 2R_24285765_SNP [dm6]	C	T	1.345e^-4	0.663	INTRON nvy	TF binding site mE1_TFBS_chinmo
3L	4012141	3L_4012141_SNP [dm3] 3L_4012141_SNP [dm6]	G	C	1.345e^-4	0.663	INTERGENIC
2R	18720316	2R_18720316_SNP [dm3] 2R_22832793_SNP [dm6]	T	A	1.350e^-4	0.663	DOWNSTREAM CG30272 INTRON CG30265
2R	17117386	2R_17117386_SNP [dm3] 2R_21229881_SNP [dm6]	G	C	1.351e^-4	0.663	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14716399	3L_14716399_SNP [dm3] 3L_14723299_SNP [dm6]	A	G	1.362e^-4	0.663	INTRON ome
3R	17634732	3R_17634732_SNP [dm3] 3R_21809010_SNP [dm6]	C	T	1.366e^-4	0.663	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24627818	3R_24627818_DEL [dm3] 3R_28802096_DEL [dm6]	AGGATATTTGAAAAGGATAC...	A	1.372e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13621604	3L_13621604_SNP [dm3] 3L_13628504_SNP [dm6]	G	A	1.374e^-4	0.663	INTRON bru-3
2L	15772318	2L_15772318_SNP [dm3] 2L_15772318_SNP [dm6]	A	G	1.375e^-4	0.663	SYNONYMOUS_CODING CG31826
3R	24901661	3R_24901661_SNP [dm3] 3R_29075939_SNP [dm6]	T	A	1.376e^-4	0.663	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8715212	X_8715212_SNP [dm3] X_8821179_SNP [dm6]	T	A	1.379e^-4	0.663	INTERGENIC
X	8715221	X_8715221_SNP [dm3] X_8821188_SNP [dm6]	C	T	1.379e^-4	0.663	INTERGENIC
3L	6018040	3L_6018040_SNP [dm3] 3L_6024940_SNP [dm6]	T	A	1.382e^-4	0.663	INTRON PVRAP	TF binding site mE1_TFBS_chinmo
3L	18387373	3L_18387373_SNP [dm3] 3L_18394273_SNP [dm6]	T	A	1.382e^-4	0.663	INTERGENIC	TF binding site mE1_TFBS_cad
X	3794513	X_3794513_SNP [dm3] X_3900480_SNP [dm6]	G	A	1.395e^-4	0.663	INTRON CG42541
3L	10449338	3L_10449338_SNP [dm3] 3L_10456238_SNP [dm6]	A	T	1.401e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6124763	2L_6124763_SNP [dm3] 2L_6124763_SNP [dm6]	C	A	1.402e^-4	0.663	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	14714080	3L_14714080_SNP [dm3] 3L_14720980_SNP [dm6]	G	A	1.402e^-4	0.663	INTRON ome
3L	7921272	3L_7921272_SNP [dm3] 3L_7928172_SNP [dm6]	A	T	1.412e^-4	0.663	INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3786876	2L_3786876_SNP [dm3] 2L_3786876_SNP [dm6]	G	A	1.413e^-4	0.663	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11625214	3L_11625214_SNP [dm3] 3L_11632114_SNP [dm6]	T	G	1.414e^-4	0.663	DOWNSTREAM CR45158 INTRON CG32091
2L	6583125	2L_6583125_SNP [dm3] 2L_6583125_SNP [dm6]	G	C	1.417e^-4	0.663	INTRON CG11319	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18327310	3L_18327310_SNP [dm3] 3L_18334210_SNP [dm6]	A	G	1.421e^-4	0.663	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10154649	2L_10154649_SNP [dm3] 2L_10154649_SNP [dm6]	C	T	1.427e^-4	0.663	INTRON CG44153 & 1 other
3R	8646481	3R_8646481_SNP [dm3] 3R_12820759_SNP [dm6]	C	G	1.440e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5964588	2L_5964588_SNP [dm3] 2L_5964588_SNP [dm6]	T	G	1.441e^-4	0.663	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
2R	9939282	2R_9939282_SNP [dm3] 2R_14051777_SNP [dm6]	C	A	1.441e^-4	0.663	INTRON mam
X	8435721	X_8435721_SNP [dm3] X_8541688_SNP [dm6]	C	T	1.443e^-4	0.663	INTRON Nrg
2L	7319582	2L_7319582_SNP [dm3] 2L_7319582_SNP [dm6]	T	C	1.448e^-4	0.663	INTERGENIC
X	9159816	X_9159816_SNP [dm3] X_9265783_SNP [dm6]	C	A	1.448e^-4	0.663	INTRON Erk7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1837182	3L_1837182_SNP [dm3] 3L_1837182_SNP [dm6]	C	T	1.459e^-4	0.663	INTERGENIC
2R	10344130	2R_10344130_SNP [dm3] 2R_14456625_SNP [dm6]	T	A	1.461e^-4	0.663	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6311797	2L_6311797_SNP [dm3] 2L_6311797_SNP [dm6]	G	A	1.463e^-4	0.663	INTRON Ddr
3R	10523063	3R_10523063_SNP [dm3] 3R_14697341_SNP [dm6]	A	T	1.465e^-4	0.663	UPSTREAM Meltrin DOWNSTREAM kibra INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8351227	3L_8351227_SNP [dm3] 3L_8358127_SNP [dm6]	A	G	1.465e^-4	0.663	UPSTREAM Idh INTRON Idh
2R	9776906	2R_9776906_SNP [dm3] 2R_13889401_SNP [dm6]	C	A	1.470e^-4	0.663	NON_SYNONYMOUS_CODING shot INTRON shot
2L	7319577	2L_7319577_SNP [dm3] 2L_7319577_SNP [dm6]	A	T	1.477e^-4	0.663	INTERGENIC
2L	15375666	2L_15375666_SNP [dm3] 2L_15375666_SNP [dm6]	A	T	1.484e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2981170	3L_2981170_SNP [dm3] 3L_2981170_SNP [dm6]	C	T	1.484e^-4	0.663	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
X	5763641	X_5763641_SNP [dm3] X_5869608_SNP [dm6]	G	A	1.486e^-4	0.663	NON_SYNONYMOUS_CODING CG15764
3R	5545289	3R_5545289_SNP [dm3] 3R_9719567_SNP [dm6]	G	A	1.491e^-4	0.663	NON_SYNONYMOUS_CODING hyd	TF binding site BDTNP1_TFBS_prd
2L	21255637	2L_21255637_SNP [dm3] 2L_21255637_SNP [dm6]	T	A	1.498e^-4	0.663	NON_SYNONYMOUS_CODING Hr39	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12731542	3L_12731542_SNP [dm3] 3L_12738442_SNP [dm6]	C	A	1.501e^-4	0.663	INTRON Ptp69D
3L	8258648	3L_8258648_SNP [dm3] 3L_8265548_SNP [dm6]	G	A	1.511e^-4	0.663	INTRON Dscam4
3L	18640618	3L_18640618_SNP [dm3] 3L_18647518_SNP [dm6]	G	T	1.513e^-4	0.663	INTRON MYPT-75D
2R	11876830	2R_11876830_SNP [dm3] 2R_15989325_SNP [dm6]	G	T	1.519e^-4	0.663	UTR_5_PRIME Strn-Mlck DOWNSTREAM CG8314
3L	3986070	3L_3986070_SNP [dm3] 3L_3986070_SNP [dm6]	A	C	1.520e^-4	0.663	INTRON scrt
X	8470289	X_8470289_SNP [dm3] X_8576256_SNP [dm6]	G	T	1.521e^-4	0.663	INTRON CG12065
X	13344646	X_13344646_SNP [dm3] X_13450613_SNP [dm6]	G	A	1.525e^-4	0.663	INTRON Neto
3R	24627433	3R_24627433_SNP [dm3] 3R_28801711_SNP [dm6]	C	A	1.535e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24627435	3R_24627435_SNP [dm3] 3R_28801713_SNP [dm6]	A	G	1.535e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12345679	2R_12345679_DEL [dm3] 2R_16458174_DEL [dm6]	TT	T	1.538e^-4	0.663	INTERGENIC
3L	4681371	3L_4681371_SNP [dm3] 3L_4681371_SNP [dm6]	G	A	1.553e^-4	0.663	UTR_5_PRIME axo INTRON axo
2L	12519821	2L_12519821_SNP [dm3] 2L_12519821_SNP [dm6]	T	C	1.554e^-4	0.663	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	18625184	3R_18625184_SNP [dm3] 3R_22799462_SNP [dm6]	G	T	1.554e^-4	0.663	INTERGENIC
3L	7226269	3L_7226269_SNP [dm3] 3L_7233169_SNP [dm6]	T	C	1.554e^-4	0.663	INTERGENIC
3R	5084485	3R_5084485_SNP [dm3] 3R_9258763_SNP [dm6]	C	A	1.554e^-4	0.663	UPSTREAM CG8436 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11658609	2R_11658609_SNP [dm3] 2R_15771104_SNP [dm6]	T	G	1.564e^-4	0.663	UTR_3_PRIME Zasp52 INTRON Zasp52
X	6834690	X_6834690_SNP [dm3] X_6940657_SNP [dm6]	T	A	1.565e^-4	0.663	INTRON CG14431
3L	4681366	3L_4681366_SNP [dm3] 3L_4681366_SNP [dm6]	G	C	1.566e^-4	0.663	UTR_5_PRIME axo INTRON axo
3R	14036147	3R_14036147_SNP [dm3] 3R_18210425_SNP [dm6]	A	C	1.570e^-4	0.663	INTRON CG7985
3L	11948849	3L_11948849_SNP [dm3] 3L_11955749_SNP [dm6]	A	T	1.575e^-4	0.663	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3R	13638869	3R_13638869_SNP [dm3] 3R_17813147_SNP [dm6]	A	G	1.579e^-4	0.663	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	14937740	2R_14937740_SNP [dm3] 2R_19050235_SNP [dm6]	C	A	1.579e^-4	0.663	INTERGENIC
X	10481766	X_10481766_SNP [dm3] X_10587733_SNP [dm6]	T	C	1.583e^-4	0.663	INTERGENIC
3L	13681938	3L_13681938_SNP [dm3] 3L_13688838_SNP [dm6]	A	G	1.583e^-4	0.663	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3389252	3R_3389252_SNP [dm3] 3R_7563530_SNP [dm6]	A	G	1.585e^-4	0.663	INTERGENIC
2R	17107810	2R_17107810_SNP [dm3] 2R_21220305_SNP [dm6]	G	C	1.585e^-4	0.663	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	24294107	3R_24294107_SNP [dm3] 3R_28468385_SNP [dm6]	G	A	1.587e^-4	0.663	INTRON beat-VI
3L	6709586	3L_6709586_SNP [dm3] 3L_6716486_SNP [dm6]	G	A	1.588e^-4	0.663	SYNONYMOUS_CODING ple	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17001480	3R_17001480_SNP [dm3] 3R_21175758_SNP [dm6]	G	A	1.590e^-4	0.663	INTRON SNF4Agamma
X	2476619	X_2476619_SNP [dm3] X_2582586_SNP [dm6]	C	T	1.592e^-4	0.663	UPSTREAM CG13759 INTRON CG13759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17016515	3R_17016515_SNP [dm3] 3R_21190793_SNP [dm6]	G	T	1.593e^-4	0.663	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9916174	2R_9916174_SNP [dm3] 2R_14028669_SNP [dm6]	T	C	1.596e^-4	0.663	UTR_5_PRIME CG18371 INTRON mam
3R	8580678	3R_8580678_SNP [dm3] 3R_12754956_SNP [dm6]	T	C	1.597e^-4	0.663	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	16873818	X_16873818_SNP [dm3] X_16979785_SNP [dm6]	C	T	1.598e^-4	0.663	INTRON CG45002
2L	7831022	2L_7831022_SNP [dm3] 2L_7831022_SNP [dm6]	C	T	1.602e^-4	0.663	SYNONYMOUS_CODING mts	TF binding site mE1_TFBS_cad
3R	14161674	3R_14161674_SNP [dm3] 3R_18335952_SNP [dm6]	T	A	1.603e^-4	0.663	INTRON CG15803
3R	22954336	3R_22954336_SNP [dm3] 3R_27128614_SNP [dm6]	C	G	1.607e^-4	0.663	INTRON CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23314849	3R_23314849_SNP [dm3] 3R_27489127_SNP [dm6]	T	C	1.611e^-4	0.663	SYNONYMOUS_CODING Gr98a
3L	21121257	3L_21121257_SNP [dm3] 3L_21128157_SNP [dm6]	A	G	1.612e^-4	0.663	INTRON ko
2L	1097167	2L_1097167_SNP [dm3] 2L_1097167_SNP [dm6]	G	C	1.613e^-4	0.663	INTRON CG4629
3R	16998169	3R_16998169_SNP [dm3] 3R_21172447_SNP [dm6]	A	C	1.630e^-4	0.669	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4998371	X_4998371_SNP [dm3] X_5104338_SNP [dm6]	G	T	1.636e^-4	0.669	INTRON rg & 1 other
3R	23159272	3R_23159272_SNP [dm3] 3R_27333550_SNP [dm6]	T	C	1.641e^-4	0.669	INTERGENIC
2L	12519790	2L_12519790_SNP [dm3] 2L_12519790_SNP [dm6]	A	T	1.645e^-4	0.669	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	15608258	3R_15608258_SNP [dm3] 3R_19782536_SNP [dm6]	G	A	1.645e^-4	0.669	NON_SYNONYMOUS_CODING CG11407 UPSTREAM CG11453
2L	5964571	2L_5964571_SNP [dm3] 2L_5964571_SNP [dm6]	C	A	1.648e^-4	0.669	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
X	4581683	X_4581683_SNP [dm3] X_4687650_SNP [dm6]	T	A	1.652e^-4	0.669	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5965103	2L_5965103_SNP [dm3] 2L_5965103_SNP [dm6]	T	A	1.656e^-4	0.669	UPSTREAM psd DOWNSTREAM CG13992 INTERGENIC
3R	4938899	3R_4938899_DEL [dm3] 3R_9113177_DEL [dm6]	ACGTTCCTAC	A	1.660e^-4	0.669	INTRON pum
2R	18757509	2R_18757509_SNP [dm3] 2R_22869986_SNP [dm6]	T	A	1.664e^-4	0.669	NON_SYNONYMOUS_CODING fd59A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7311303	2L_7311303_SNP [dm3] 2L_7311303_SNP [dm6]	A	G	1.672e^-4	0.669	INTRON wg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3493748	3L_3493748_SNP [dm3] 3L_3493748_SNP [dm6]	G	A	1.673e^-4	0.669	INTRON CG42324
3R	17574704	3R_17574704_SNP [dm3] 3R_21748982_SNP [dm6]	A	T	1.675e^-4	0.669	UTR_3_PRIME CG31343 UPSTREAM CG31233
X	4580477	X_4580477_SNP [dm3] X_4686444_SNP [dm6]	T	A	1.684e^-4	0.669	UTR_5_PRIME Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	9939274	2R_9939274_SNP [dm3] 2R_14051769_SNP [dm6]	T	G	1.685e^-4	0.669	INTRON mam
3L	17613122	3L_17613122_SNP [dm3] 3L_17620022_SNP [dm6]	T	A	1.687e^-4	0.669	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17613123	3L_17613123_SNP [dm3] 3L_17620023_SNP [dm6]	T	A	1.687e^-4	0.669	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6894906	X_6894906_SNP [dm3] X_7000873_SNP [dm6]	G	A	1.691e^-4	0.669	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8549246	3L_8549246_SNP [dm3] 3L_8556146_SNP [dm6]	A	G	1.694e^-4	0.669	INTRON rhea
2R	10344322	2R_10344322_SNP [dm3] 2R_14456817_SNP [dm6]	A	G	1.710e^-4	0.671	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
3L	17613115	3L_17613115_DEL [dm3] 3L_17620015_DEL [dm6]	ATA	A	1.712e^-4	0.671	UPSTREAM Eip74EF DOWNSTREAM CG6259 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17629497	3L_17629497_SNP [dm3] 3L_17636397_SNP [dm6]	A	G	1.716e^-4	0.671	SYNONYMOUS_CODING CG7497
3R	23314828	3R_23314828_SNP [dm3] 3R_27489106_SNP [dm6]	G	A	1.717e^-4	0.671	SYNONYMOUS_CODING Gr98a
3R	9497590	3R_9497590_SNP [dm3] 3R_13671868_SNP [dm6]	T	C	1.727e^-4	0.671	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5908523	2R_5908523_SNP [dm3] 2R_10021018_SNP [dm6]	A	G	1.728e^-4	0.671	INTRON Pka-R2
3L	13178709	3L_13178709_SNP [dm3] 3L_13185609_SNP [dm6]	T	G	1.735e^-4	0.671	INTERGENIC
2L	11861264	2L_11861264_SNP [dm3] 2L_11861264_SNP [dm6]	A	G	1.737e^-4	0.671	INTRON Pde1c
3L	5845188	3L_5845188_SNP [dm3] 3L_5852088_SNP [dm6]	G	A	1.741e^-4	0.671	INTERGENIC
X	8852463	X_8852463_SNP [dm3] X_8958430_SNP [dm6]	C	T	1.743e^-4	0.671	INTRON rdgA
2L	9557215	2L_9557215_SNP [dm3] 2L_9557215_SNP [dm6]	G	A	1.748e^-4	0.671	INTRON jp
X	6888435	X_6888435_SNP [dm3] X_6994402_SNP [dm6]	A	C	1.748e^-4	0.671	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl
X	6888503	X_6888503_SNP [dm3] X_6994470_SNP [dm6]	C	T	1.748e^-4	0.671	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl
2R	16424388	2R_16424388_SNP [dm3] 2R_20536883_SNP [dm6]	C	A	1.750e^-4	0.671	SYNONYMOUS_CODING CG13423
2R	11881044	2R_11881044_SNP [dm3] 2R_15993539_SNP [dm6]	A	T	1.753e^-4	0.671	UTR_3_PRIME CG8320 & 1 other DOWNSTREAM ATPCL
2L	12972623	2L_12972623_SNP [dm3] 2L_12972623_SNP [dm6]	A	G	1.761e^-4	0.672	INTERGENIC
2L	11380654	2L_11380654_SNP [dm3] 2L_11380654_SNP [dm6]	G	A	1.767e^-4	0.672	INTERGENIC	regulatory region REDfly_CRMs
3L	6018053	3L_6018053_SNP [dm3] 3L_6024953_SNP [dm6]	A	C	1.770e^-4	0.672	INTRON PVRAP	TF binding site mE1_TFBS_chinmo
2L	14902033	2L_14902033_SNP [dm3] 2L_14902033_SNP [dm6]	A	G	1.788e^-4	0.672	INTERGENIC
2R	20173009	2R_20173009_SNP [dm3] 2R_24285486_SNP [dm6]	G	T	1.791e^-4	0.672	INTRON nvy
3R	19956005	3R_19956005_SNP [dm3] 3R_24130283_SNP [dm6]	C	A	1.797e^-4	0.672	UPSTREAM Tsc1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8545742	3L_8545742_SNP [dm3] 3L_8552642_SNP [dm6]	C	G	1.805e^-4	0.672	INTRON rhea
3L	7921862	3L_7921862_SNP [dm3] 3L_7928762_SNP [dm6]	C	T	1.811e^-4	0.672	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15480055	3R_15480055_SNP [dm3] 3R_19654333_SNP [dm6]	A	G	1.812e^-4	0.672	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12755139	2R_12755139_SNP [dm3] 2R_16867634_SNP [dm6]	T	C	1.813e^-4	0.672	UTR_5_PRIME Psi UPSTREAM Ef1beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_Ubx
X	2478373	X_2478373_SNP [dm3] X_2584340_SNP [dm6]	C	G	1.823e^-4	0.672	SYNONYMOUS_CODING CG13760 DOWNSTREAM CG13759
X	4998378	X_4998378_SNP [dm3] X_5104345_SNP [dm6]	C	G	1.828e^-4	0.672	INTRON rg & 1 other
2L	8228953	2L_8228953_SNP [dm3] 2L_8228953_SNP [dm6]	C	T	1.829e^-4	0.672	SYNONYMOUS_CODING Pvr
3R	15190724	3R_15190724_SNP [dm3] 3R_19365002_SNP [dm6]	A	C	1.830e^-4	0.672	INTERGENIC
3L	10235601	3L_10235601_SNP [dm3] 3L_10242501_SNP [dm6]	T	G	1.831e^-4	0.672	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	6709307	3L_6709307_SNP [dm3] 3L_6716207_SNP [dm6]	A	G	1.831e^-4	0.672	SYNONYMOUS_CODING ple	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8792612	X_8792612_SNP [dm3] X_8898579_SNP [dm6]	A	G	1.833e^-4	0.672	UTR_3_PRIME CG1885 UPSTREAM Moe DOWNSTREAM CG1885	TF binding site BDTNP1_TFBS_dl
3R	5559895	3R_5559895_SNP [dm3] 3R_9734173_SNP [dm6]	G	T	1.834e^-4	0.672	UTR_3_PRIME CG12950 UPSTREAM alphaTub85E DOWNSTREAM CG12950
3R	23315473	3R_23315473_SNP [dm3] 3R_27489751_SNP [dm6]	T	C	1.836e^-4	0.672	UTR_3_PRIME Gr98a
X	6888729	X_6888729_SNP [dm3] X_6994696_SNP [dm6]	T	A	1.848e^-4	0.672	INTRON Inx7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
3R	5305591	3R_5305591_SNP [dm3] 3R_9479869_SNP [dm6]	G	T	1.848e^-4	0.672	INTRON CG16779
2R	12355840	2R_12355840_SNP [dm3] 2R_16468335_SNP [dm6]	C	A	1.850e^-4	0.672	NON_SYNONYMOUS_CODING CheB53b DOWNSTREAM CheB53a
3R	8646415	3R_8646415_SNP [dm3] 3R_12820693_SNP [dm6]	C	A	1.853e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19499763	2R_19499763_SNP [dm3] 2R_23612240_SNP [dm6]	T	C	1.855e^-4	0.672	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17947084	2R_17947084_SNP [dm3] 2R_22059579_SNP [dm6]	T	A	1.857e^-4	0.672	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19847480	2L_19847480_SNP [dm3] 2L_19847480_SNP [dm6]	A	G	1.858e^-4	0.672	INTRON sick
2L	19634034	2L_19634034_SNP [dm3] 2L_19634034_SNP [dm6]	T	A	1.858e^-4	0.672	INTRON Lar
X	8511127	X_8511127_DEL [dm3] X_8617094_DEL [dm6]	TT	T	1.864e^-4	0.672	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7181363	2L_7181363_SNP [dm3] 2L_7181363_SNP [dm6]	A	T	1.865e^-4	0.672	UPSTREAM CG4495 INTERGENIC
3R	17634129	3R_17634129_SNP [dm3] 3R_21808407_SNP [dm6]	T	C	1.867e^-4	0.672	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6018450	3L_6018450_SNP [dm3] 3L_6025350_SNP [dm6]	A	G	1.870e^-4	0.672	INTRON PVRAP
3L	12403894	3L_12403894_SNP [dm3] 3L_12410794_SNP [dm6]	A	G	1.883e^-4	0.672	INTRON CG32103
2L	5664625	2L_5664625_SNP [dm3] 2L_5664625_SNP [dm6]	T	C	1.883e^-4	0.672	INTRON Hsp60C
3R	6544311	3R_6544311_SNP [dm3] 3R_10718589_SNP [dm6]	C	T	1.884e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11902993	2R_11902993_SNP [dm3] 2R_16015488_SNP [dm6]	C	T	1.886e^-4	0.672	SYNONYMOUS_CODING Rrp42 UPSTREAM Prosbeta1 DOWNSTREAM CG8397	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	13638562	3R_13638562_SNP [dm3] 3R_17812840_SNP [dm6]	T	C	1.888e^-4	0.672	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8715095	X_8715095_SNP [dm3] X_8821062_SNP [dm6]	C	A	1.889e^-4	0.672	INTERGENIC
2R	6676649	2R_6676649_SNP [dm3] 2R_10789144_SNP [dm6]	G	A	1.892e^-4	0.672	INTRON CG33144
3R	10895700	3R_10895700_SNP [dm3] 3R_15069978_SNP [dm6]	T	G	1.901e^-4	0.672	INTRON dpr9
X	19367525	X_19367525_SNP [dm3] X_19473492_SNP [dm6]	G	T	1.904e^-4	0.672	DOWNSTREAM CG32533 INTERGENIC
3R	22729098	3R_22729098_MNP [dm3] 3R_26903376_MNP [dm6]	CTT	TCG	1.905e^-4	0.672	INTRON T48	regulatory region REDfly_CRMs
2R	8634346	2R_8634346_DEL [dm3] 2R_12746841_DEL [dm6]	TCGT	T	1.920e^-4	0.672	INTRON CG42663	TF binding site mE1_TFBS_cad
2L	3860859	2L_3860859_SNP [dm3] 2L_3860859_SNP [dm6]	A	T	1.921e^-4	0.672	DOWNSTREAM CR44078 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6706246	3L_6706246_SNP [dm3] 3L_6713146_SNP [dm6]	C	T	1.925e^-4	0.672	DOWNSTREAM ple INTERGENIC
X	19081887	X_19081887_SNP [dm3] X_19187854_SNP [dm6]	G	A	1.927e^-4	0.672	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8851447	X_8851447_SNP [dm3] X_8957414_SNP [dm6]	A	G	1.928e^-4	0.672	INTRON rdgA
3R	16949410	3R_16949410_SNP [dm3] 3R_21123688_SNP [dm6]	A	T	1.945e^-4	0.672	INTRON slmb	TF binding site mE1_TFBS_HSA
2R	16790720	2R_16790720_SNP [dm3] 2R_20903215_SNP [dm6]	T	C	1.952e^-4	0.672	UTR_5_PRIME otp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8955781	3L_8955781_SNP [dm3] 3L_8962681_SNP [dm6]	T	A	1.953e^-4	0.672	INTRON CG5660
3L	13178705	3L_13178705_SNP [dm3] 3L_13185605_SNP [dm6]	C	A	1.961e^-4	0.672	INTERGENIC
3R	5120672	3R_5120672_SNP [dm3] 3R_9294950_SNP [dm6]	T	G	1.963e^-4	0.672	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
2L	12519823	2L_12519823_SNP [dm3] 2L_12519823_SNP [dm6]	C	G	1.964e^-4	0.672	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	9754881	2L_9754881_SNP [dm3] 2L_9754881_SNP [dm6]	G	A	1.967e^-4	0.672	INTERGENIC
3L	6753514	3L_6753514_SNP [dm3] 3L_6760414_SNP [dm6]	G	A	1.968e^-4	0.672	SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12097153	2L_12097153_SNP [dm3] 2L_12097153_SNP [dm6]	T	C	1.971e^-4	0.672	SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	7749460	3L_7749460_SNP [dm3] 3L_7756360_SNP [dm6]	A	G	1.974e^-4	0.672	UPSTREAM CG32373 INTRON CG32373
3R	14161528	3R_14161528_SNP [dm3] 3R_18335806_SNP [dm6]	T	A	1.976e^-4	0.672	INTRON CG15803
X	4599899	X_4599899_SNP [dm3] X_4705866_SNP [dm6]	T	C	1.985e^-4	0.672	DOWNSTREAM l_1_G0334 INTRON CG7024
2R	9939239	2R_9939239_DEL [dm3] 2R_14051734_DEL [dm6]	TCTAA	G	1.988e^-4	0.672	INTRON mam
2R	16809614	2R_16809614_SNP [dm3] 2R_20922109_SNP [dm6]	C	T	1.991e^-4	0.672	INTRON Rx
3L	13511768	3L_13511768_SNP [dm3] 3L_13518668_SNP [dm6]	G	T	1.994e^-4	0.672	UTR_5_PRIME CG10710	TF binding site mE1_TFBS_cad
X	2243292	X_2243292_SNP [dm3] X_2349259_SNP [dm6]	A	C	2.000e^-4	0.672	INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8564375	X_8564375_SNP [dm3] X_8670342_SNP [dm6]	A	C	2.000e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_sens
X	8709224	X_8709224_SNP [dm3] X_8815191_SNP [dm6]	C	T	2.000e^-4	0.672	INTERGENIC
3R	24627601	3R_24627601_SNP [dm3] 3R_28801879_SNP [dm6]	C	T	2.003e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16273510	X_16273510_SNP [dm3] X_16379477_SNP [dm6]	T	A	2.003e^-4	0.672	INTRON Fur2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16873760	X_16873760_SNP [dm3] X_16979727_SNP [dm6]	C	G	2.010e^-4	0.672	INTRON CG45002
3R	13523192	3R_13523192_SNP [dm3] 3R_17697470_SNP [dm6]	G	T	2.011e^-4	0.672	INTRON osa
2R	10336637	2R_10336637_SNP [dm3] 2R_14449132_SNP [dm6]	T	G	2.014e^-4	0.672	INTRON Oaz	TF binding site mE1_TFBS_Trl
2R	18715458	2R_18715458_SNP [dm3] 2R_22827935_SNP [dm6]	A	C	2.017e^-4	0.672	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
3R	14161714	3R_14161714_SNP [dm3] 3R_18335992_SNP [dm6]	A	G	2.020e^-4	0.672	INTRON CG15803
2R	10348009	2R_10348009_SNP [dm3] 2R_14460504_SNP [dm6]	G	A	2.025e^-4	0.672	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4958061	3R_4958061_SNP [dm3] 3R_9132339_SNP [dm6]	C	A	2.027e^-4	0.672	INTRON pum
2L	2518782	2L_2518782_SNP [dm3] 2L_2518782_SNP [dm6]	A	G	2.028e^-4	0.672	UPSTREAM CG3528 INTERGENIC
X	8679379	X_8679379_SNP [dm3] X_8785346_SNP [dm6]	T	C	2.029e^-4	0.672	UTR_5_PRIME Lim1 INTRON Lim1
3R	19062305	3R_19062305_SNP [dm3] 3R_23236583_SNP [dm6]	C	G	2.034e^-4	0.672	SYNONYMOUS_CODING CG4467
2L	7831727	2L_7831727_SNP [dm3] 2L_7831727_SNP [dm6]	A	C	2.035e^-4	0.672	INTRON mts
2L	10292004	2L_10292004_SNP [dm3] 2L_10292004_SNP [dm6]	T	C	2.043e^-4	0.672	DOWNSTREAM Hand INTRON CG5604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	12291748	2L_12291748_SNP [dm3] 2L_12291748_SNP [dm6]	G	A	2.044e^-4	0.672	INTRON aret
3R	14161518	3R_14161518_MNP [dm3] 3R_18335796_MNP [dm6]	AAC	GTT	2.047e^-4	0.672	INTRON CG15803
3L	16865542	3L_16865542_SNP [dm3] 3L_16872442_SNP [dm6]	C	A	2.050e^-4	0.672	INTRON Lmpt
3R	16949393	3R_16949393_SNP [dm3] 3R_21123671_SNP [dm6]	C	T	2.051e^-4	0.672	INTRON slmb
2L	7321327	2L_7321327_SNP [dm3] 2L_7321327_SNP [dm6]	G	T	2.054e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11213213	3R_11213213_SNP [dm3] 3R_15387491_SNP [dm6]	T	C	2.057e^-4	0.672	INTRON Rbp	TF binding site mE1_TFBS_cad
X	19082371	X_19082371_SNP [dm3] X_19188338_SNP [dm6]	C	A	2.061e^-4	0.672	INTRON Mec2	TF binding site mE1_TFBS_cad
2R	19658240	2R_19658240_SNP [dm3] 2R_23770717_SNP [dm6]	C	T	2.081e^-4	0.677	INTRON CG9850	TF binding site mE1_TFBS_inv
3R	17574315	3R_17574315_SNP [dm3] 3R_21748593_SNP [dm6]	G	T	2.085e^-4	0.678	SYNONYMOUS_CODING CG31343
2L	10675599	2L_10675599_SNP [dm3] 2L_10675599_SNP [dm6]	T	A	2.096e^-4	0.678	INTERGENIC
3R	13638824	3R_13638824_DEL [dm3] 3R_17813102_DEL [dm6]	TTAT	T	2.098e^-4	0.678	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	7625173	3L_7625173_SNP [dm3] 3L_7632073_SNP [dm6]	G	T	2.098e^-4	0.678	INTRON CG33275	TF binding site mE1_TFBS_sbb
3R	9434100	3R_9434100_SNP [dm3] 3R_13608378_SNP [dm6]	G	C	2.106e^-4	0.679	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
3R	5302542	3R_5302542_SNP [dm3] 3R_9476820_SNP [dm6]	G	T	2.110e^-4	0.679	INTRON CG16779
2L	904771	2L_904771_DEL [dm3] 2L_904771_DEL [dm6]	TAG	C	2.111e^-4	0.679	DOWNSTREAM CR45261 INTERGENIC
3R	16956450	3R_16956450_SNP [dm3] 3R_21130728_SNP [dm6]	A	G	2.117e^-4	0.679	SYNONYMOUS_CODING Ice2 UTR_5_PRIME Ice2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16790721	2R_16790721_SNP [dm3] 2R_20903216_SNP [dm6]	A	G	2.119e^-4	0.679	UTR_5_PRIME otp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19133085	X_19133085_SNP [dm3] X_19239052_SNP [dm6]	A	G	2.126e^-4	0.68	INTRON CG14196	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5116350	X_5116350_SNP [dm3] X_5222317_SNP [dm6]	T	C	2.129e^-4	0.68	INTRON CG15465 & 1 other
X	4582843	X_4582843_SNP [dm3] X_4688810_SNP [dm6]	A	T	2.131e^-4	0.68	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	3782741	2L_3782741_SNP [dm3] 2L_3782741_SNP [dm6]	G	A	2.135e^-4	0.68	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4582746	X_4582746_SNP [dm3] X_4688713_SNP [dm6]	C	A	2.146e^-4	0.681	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	12275142	2R_12275142_SNP [dm3] 2R_16387637_SNP [dm6]	G	A	2.151e^-4	0.681	INTRON Sema-2b
2L	7831128	2L_7831128_SNP [dm3] 2L_7831128_SNP [dm6]	T	C	2.152e^-4	0.681	INTRON mts	TF binding site mE1_TFBS_cad
X	16273447	X_16273447_SNP [dm3] X_16379414_SNP [dm6]	A	G	2.155e^-4	0.681	SYNONYMOUS_CODING Fur2 UTR_3_PRIME Fur2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8709254	X_8709254_SNP [dm3] X_8815221_SNP [dm6]	A	C	2.157e^-4	0.681	INTERGENIC
3R	10761285	3R_10761285_SNP [dm3] 3R_14935563_SNP [dm6]	T	A	2.171e^-4	0.683	INTERGENIC
X	20790328	X_20790328_SNP [dm3] X_20919301_SNP [dm6]	G	T	2.175e^-4	0.683	INTRON shakB
2R	16992485	2R_16992485_SNP [dm3] 2R_21104980_SNP [dm6]	G	A	2.177e^-4	0.683	INTRON ktub	TF binding site mE1_TFBS_inv
3L	22507368	3L_22507368_SNP [dm3] 3L_22514268_SNP [dm6]	G	A	2.179e^-4	0.683	INTERGENIC
3L	12731545	3L_12731545_SNP [dm3] 3L_12738445_SNP [dm6]	G	T	2.185e^-4	0.683	INTRON Ptp69D
3L	15388832	3L_15388832_SNP [dm3] 3L_15395732_SNP [dm6]	A	T	2.192e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18714422	X_18714422_SNP [dm3] X_18820389_SNP [dm6]	A	T	2.200e^-4	0.683	UTR_5_PRIME CG42450	TF binding site mE1_TFBS_chinmo
X	18714434	X_18714434_SNP [dm3] X_18820401_SNP [dm6]	T	A	2.200e^-4	0.683	UTR_5_PRIME CG42450	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18551632	3R_18551632_SNP [dm3] 3R_22725910_SNP [dm6]	A	C	2.203e^-4	0.683	SYNONYMOUS_CODING CG4813	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21130769	X_21130769_SNP [dm3] X_21259742_SNP [dm6]	A	G	2.203e^-4	0.683	INTRON CG32521
X	4591249	X_4591249_SNP [dm3] X_4697216_SNP [dm6]	T	G	2.204e^-4	0.683	INTRON ctp
X	832279	X_832279_SNP [dm3] X_938246_SNP [dm6]	A	G	2.209e^-4	0.683	UTR_3_PRIME CG32815 DOWNSTREAM TRAM & 1 other
2L	19851533	2L_19851533_SNP [dm3] 2L_19851533_SNP [dm6]	T	C	2.211e^-4	0.683	INTRON sick
3L	16948782	3L_16948782_SNP [dm3] 3L_16955682_SNP [dm6]	A	T	2.218e^-4	0.683	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16956425	3R_16956425_SNP [dm3] 3R_21130703_SNP [dm6]	C	T	2.222e^-4	0.683	NON_SYNONYMOUS_CODING Ice2 UTR_5_PRIME Ice2 UPSTREAM Obp93a	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9602504	2R_9602504_SNP [dm3] 2R_13714999_SNP [dm6]	T	C	2.225e^-4	0.683	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4581689	X_4581689_DEL [dm3] X_4687656_DEL [dm6]	ACTT	A	2.226e^-4	0.683	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6528181	2R_6528181_SNP [dm3] 2R_10640676_SNP [dm6]	A	G	2.232e^-4	0.683	NON_SYNONYMOUS_CODING CG11883 UTR_3_PRIME CG11883
3L	4666358	3L_4666358_SNP [dm3] 3L_4666358_SNP [dm6]	C	T	2.232e^-4	0.683	NON_SYNONYMOUS_CODING CG32236 INTRON axo
2L	7297171	2L_7297171_SNP [dm3] 2L_7297171_SNP [dm6]	T	G	2.248e^-4	0.687	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4590186	X_4590186_SNP [dm3] X_4696153_SNP [dm6]	C	A	2.262e^-4	0.689	INTRON ctp
2R	20367856	2R_20367856_SNP [dm3] 2R_24480333_SNP [dm6]	C	T	2.262e^-4	0.689	INTRON CG13579
X	10044680	X_10044680_DEL [dm3] X_10150647_DEL [dm6]	GC	A	2.269e^-4	0.69	INTRON CR44894
X	16873751	X_16873751_DEL [dm3] X_16979718_DEL [dm6]	GCCAAAAG	G	2.272e^-4	0.69	INTRON CG45002
2R	17438048	2R_17438048_SNP [dm3] 2R_21550543_SNP [dm6]	G	A	2.279e^-4	0.691	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6439278	2R_6439278_SNP [dm3] 2R_10551773_SNP [dm6]	G	A	2.284e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	2476663	X_2476663_SNP [dm3] X_2582630_SNP [dm6]	C	T	2.290e^-4	0.691	UPSTREAM CG13759 INTRON CG13759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19194934	2L_19194934_SNP [dm3] 2L_19194934_SNP [dm6]	A	T	2.296e^-4	0.691	INTRON drl	regulatory region REDfly_CRMs
2L	22141187	2L_22141187_SNP [dm3] 2L_22141187_SNP [dm6]	T	A	2.301e^-4	0.691	INTRON CG42748
3R	20375597	3R_20375597_SNP [dm3] 3R_24549875_SNP [dm6]	C	A	2.303e^-4	0.691	INTRON Esyt2
3L	7467990	3L_7467990_INS [dm3] 3L_7474890_INS [dm6]	T	TTT	2.304e^-4	0.691	UPSTREAM CG43292 INTERGENIC
2L	5269342	2L_5269342_SNP [dm3] 2L_5269342_SNP [dm6]	A	C	2.311e^-4	0.692	DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
X	4580606	X_4580606_SNP [dm3] X_4686573_SNP [dm6]	A	G	2.314e^-4	0.692	UTR_5_PRIME Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	16273613	X_16273613_SNP [dm3] X_16379580_SNP [dm6]	T	G	2.319e^-4	0.693	NON_SYNONYMOUS_CODING Fur2 UTR_3_PRIME Fur2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18273993	3L_18273993_SNP [dm3] 3L_18280893_SNP [dm6]	T	C	2.327e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	4581171	X_4581171_SNP [dm3] X_4687138_SNP [dm6]	A	G	2.341e^-4	0.695	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	10347861	2R_10347861_SNP [dm3] 2R_14460356_SNP [dm6]	G	C	2.342e^-4	0.695	NON_SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12596265	3L_12596265_SNP [dm3] 3L_12603165_SNP [dm6]	A	T	2.343e^-4	0.695	INTERGENIC
3R	9731868	3R_9731868_SNP [dm3] 3R_13906146_SNP [dm6]	G	A	2.348e^-4	0.695	INTERGENIC
2L	7317352	2L_7317352_SNP [dm3] 2L_7317352_SNP [dm6]	T	G	2.348e^-4	0.695	INTERGENIC
2R	8872704	2R_8872704_SNP [dm3] 2R_12985199_SNP [dm6]	T	G	2.358e^-4	0.695	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	5869363	2L_5869363_SNP [dm3] 2L_5869363_SNP [dm6]	C	G	2.363e^-4	0.695	INTRON rau
3R	10524949	3R_10524949_DEL [dm3] 3R_14699227_DEL [dm6]	TTCTCAT	T	2.364e^-4	0.695	CODON_DELETION kibra	TF binding site mE1_TFBS_cad
2L	1019102	2L_1019102_SNP [dm3] 2L_1019102_SNP [dm6]	C	T	2.370e^-4	0.695	INTRON IA-2
3L	6104410	3L_6104410_SNP [dm3] 3L_6111310_SNP [dm6]	C	A	2.372e^-4	0.695	UPSTREAM Ets65A INTRON Ets65A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6789665	3L_6789665_SNP [dm3] 3L_6796565_SNP [dm6]	T	G	2.376e^-4	0.695	INTERGENIC
3R	10733608	3R_10733608_SNP [dm3] 3R_14907886_SNP [dm6]	T	C	2.378e^-4	0.695	INTERGENIC
3R	5660190	3R_5660190_SNP [dm3] 3R_9834468_SNP [dm6]	G	T	2.381e^-4	0.695	INTRON Teh1
3R	23315705	3R_23315705_SNP [dm3] 3R_27489983_SNP [dm6]	C	T	2.386e^-4	0.695	DOWNSTREAM Gr98a INTERGENIC
2R	11871528	2R_11871528_SNP [dm3] 2R_15984023_SNP [dm6]	G	A	2.394e^-4	0.695	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
X	7479200	X_7479200_SNP [dm3] X_7585167_SNP [dm6]	C	T	2.394e^-4	0.695	DOWNSTREAM CG12689 INTERGENIC	regulatory region REDfly_CRMs
2L	5964555	2L_5964555_SNP [dm3] 2L_5964555_SNP [dm6]	T	C	2.398e^-4	0.695	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
3L	12596267	3L_12596267_SNP [dm3] 3L_12603167_SNP [dm6]	G	C	2.398e^-4	0.695	INTERGENIC
3R	23904618	3R_23904618_SNP [dm3] 3R_28078896_SNP [dm6]	G	A	2.405e^-4	0.696	INTRON CG34362
2L	6128013	2L_6128013_SNP [dm3] 2L_6128013_SNP [dm6]	C	T	2.413e^-4	0.697	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18273982	3L_18273982_SNP [dm3] 3L_18280882_SNP [dm6]	G	A	2.421e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14716581	3L_14716581_SNP [dm3] 3L_14723481_SNP [dm6]	T	A	2.423e^-4	0.698	INTRON ome
X	19543750	X_19543750_SNP [dm3] X_19649717_SNP [dm6]	G	T	2.440e^-4	0.699	SYNONYMOUS_CODING Ranbp21	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14902024	2L_14902024_SNP [dm3] 2L_14902024_SNP [dm6]	G	A	2.443e^-4	0.699	INTERGENIC
3R	722463	3R_722463_DEL [dm3] 3R_4896741_DEL [dm6]	CACAAGACACGAGCC...	C	2.445e^-4	0.699	EXON CR45580
2L	12967085	2L_12967085_SNP [dm3] 2L_12967085_SNP [dm6]	T	C	2.455e^-4	0.699	INTRON CG16800
X	9095103	X_9095103_SNP [dm3] X_9201070_SNP [dm6]	T	C	2.460e^-4	0.699	INTRON su_r_
3R	6303957	3R_6303957_SNP [dm3] 3R_10478235_SNP [dm6]	C	T	2.461e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23320246	3R_23320246_SNP [dm3] 3R_27494524_SNP [dm6]	G	A	2.462e^-4	0.699	INTERGENIC
2R	17438061	2R_17438061_SNP [dm3] 2R_21550556_SNP [dm6]	A	T	2.465e^-4	0.699	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8323937	2L_8323937_SNP [dm3] 2L_8323937_SNP [dm6]	A	G	2.474e^-4	0.699	INTRON CG7781
2R	11871462	2R_11871462_SNP [dm3] 2R_15983957_SNP [dm6]	C	T	2.478e^-4	0.699	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
3R	13939152	3R_13939152_SNP [dm3] 3R_18113430_SNP [dm6]	T	A	2.481e^-4	0.699	INTRON sr
3L	11049683	3L_11049683_SNP [dm3] 3L_11056583_SNP [dm6]	A	T	2.481e^-4	0.699	UPSTREAM CG7888 INTRON CG7888
X	8766940	X_8766940_SNP [dm3] X_8872907_SNP [dm6]	T	G	2.481e^-4	0.699	DOWNSTREAM Moe & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6018102	3L_6018102_SNP [dm3] 3L_6025002_SNP [dm6]	C	T	2.485e^-4	0.699	SPLICE_SITE_REGION PVRAP INTRON PVRAP	TF binding site mE1_TFBS_chinmo
3R	13943422	3R_13943422_SNP [dm3] 3R_18117700_SNP [dm6]	G	A	2.485e^-4	0.699	INTRON sr
3L	11666730	3L_11666730_SNP [dm3] 3L_11673630_SNP [dm6]	G	A	2.497e^-4	0.699	INTRON CG32085
3L	3468731	3L_3468731_SNP [dm3] 3L_3468731_SNP [dm6]	A	G	2.502e^-4	0.699	UTR_3_PRIME CG14971 DOWNSTREAM CycJ
2R	10348010	2R_10348010_SNP [dm3] 2R_14460505_SNP [dm6]	A	C	2.509e^-4	0.699	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16095572	2R_16095572_DEL [dm3] 2R_20208067_DEL [dm6]	GGCTGT	G	2.516e^-4	0.699	INTERGENIC
X	8470381	X_8470381_SNP [dm3] X_8576348_SNP [dm6]	A	T	2.516e^-4	0.699	INTRON CG12065
2L	19847540	2L_19847540_SNP [dm3] 2L_19847540_SNP [dm6]	T	A	2.522e^-4	0.699	INTRON sick
2R	15310755	2R_15310755_SNP [dm3] 2R_19423250_SNP [dm6]	C	T	2.523e^-4	0.699	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	756135	2L_756135_SNP [dm3] 2L_756135_SNP [dm6]	A	T	2.529e^-4	0.699	INTRON GABA-B-R3
3R	15608981	3R_15608981_DEL [dm3] 3R_19783259_DEL [dm6]	GACATTCATACA...	G	2.533e^-4	0.699	UPSTREAM CG11453 DOWNSTREAM CG11407 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11240965	3L_11240965_SNP [dm3] 3L_11247865_SNP [dm6]	A	G	2.534e^-4	0.699	UPSTREAM CR44717 & 1 other DOWNSTREAM CR44713 EXON CR44715	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	17234309	3L_17234309_SNP [dm3] 3L_17241209_SNP [dm6]	G	A	2.541e^-4	0.699	SPLICE_SITE_REGION CG6512 INTRON CG6512	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	10767219	3R_10767219_SNP [dm3] 3R_14941497_SNP [dm6]	A	T	2.550e^-4	0.699	INTERGENIC
3R	6456526	3R_6456526_SNP [dm3] 3R_10630804_SNP [dm6]	A	G	2.552e^-4	0.699	INTRON hth	TF binding site mE1_TFBS_cad
2L	19847533	2L_19847533_DEL [dm3] 2L_19847533_DEL [dm6]	TTTAC	T	2.554e^-4	0.699	INTRON sick
3L	16934438	3L_16934438_SNP [dm3] 3L_16941338_SNP [dm6]	T	C	2.563e^-4	0.699	INTRON Cpr73D
3L	2994278	3L_2994278_SNP [dm3] 3L_2994278_SNP [dm6]	T	A	2.563e^-4	0.699	UPSTREAM CG2113 INTERGENIC
3L	907103	3L_907103_SNP [dm3] 3L_907103_SNP [dm6]	G	A	2.565e^-4	0.699	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6236987	3L_6236987_SNP [dm3] 3L_6243887_SNP [dm6]	C	T	2.566e^-4	0.699	SYNONYMOUS_CODING Mdr65
2R	12275318	2R_12275318_SNP [dm3] 2R_16387813_SNP [dm6]	T	A	2.568e^-4	0.699	INTRON Sema-2b
3L	10260400	3L_10260400_SNP [dm3] 3L_10267300_SNP [dm6]	T	A	2.569e^-4	0.699	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
3R	18835162	3R_18835162_SNP [dm3] 3R_23009440_SNP [dm6]	C	A	2.570e^-4	0.699	INTRON CG34375
X	4590335	X_4590335_SNP [dm3] X_4696302_SNP [dm6]	C	G	2.570e^-4	0.699	INTRON ctp
2L	6032164	2L_6032164_SNP [dm3] 2L_6032164_SNP [dm6]	C	A	2.574e^-4	0.699	INTRON CG9109
2R	10323850	2R_10323850_SNP [dm3] 2R_14436345_SNP [dm6]	G	A	2.579e^-4	0.699	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	17635062	3R_17635062_SNP [dm3] 3R_21809340_SNP [dm6]	G	A	2.580e^-4	0.699	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6890202	X_6890202_SNP [dm3] X_6996169_SNP [dm6]	A	G	2.584e^-4	0.699	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20860475	X_20860475_SNP [dm3] X_20989448_SNP [dm6]	A	T	2.601e^-4	0.699	INTERGENIC
X	9159945	X_9159945_SNP [dm3] X_9265912_SNP [dm6]	A	G	2.603e^-4	0.699	INTRON Erk7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4581717	X_4581717_INS [dm3] X_4687684_INS [dm6]	T	TTTTT	2.604e^-4	0.699	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	8714350	X_8714350_SNP [dm3] X_8820317_SNP [dm6]	T	C	2.611e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3450169	X_3450169_SNP [dm3] X_3556136_SNP [dm6]	A	G	2.613e^-4	0.699	INTRON CG32791
3R	3155964	3R_3155964_SNP [dm3] 3R_7330242_SNP [dm6]	C	T	2.615e^-4	0.699	INTERGENIC
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	2.620e^-4	0.699	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	2.622e^-4	0.699	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18704110	2R_18704110_SNP [dm3] 2R_22816605_SNP [dm6]	A	G	2.626e^-4	0.699	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
3R	22760085	3R_22760085_INS [dm3] 3R_26934363_INS [dm6]	C	CCATT	2.635e^-4	0.699	INTRON sda
3R	22760089	3R_22760089_SNP [dm3] 3R_26934367_SNP [dm6]	A	C	2.635e^-4	0.699	INTRON sda
3R	22760092	3R_22760092_SNP [dm3] 3R_26934370_SNP [dm6]	T	C	2.635e^-4	0.699	INTRON sda
3R	17634036	3R_17634036_INS [dm3] 3R_21808314_INS [dm6]	T	TT	2.635e^-4	0.699	UPSTREAM CASK INTRON CASK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6583130	2L_6583130_SNP [dm3] 2L_6583130_SNP [dm6]	G	A	2.642e^-4	0.699	INTRON CG11319	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14161647	3R_14161647_SNP [dm3] 3R_18335925_SNP [dm6]	C	T	2.643e^-4	0.699	INTRON CG15803
2R	8370716	2R_8370716_SNP [dm3] 2R_12483211_SNP [dm6]	G	A	2.643e^-4	0.699	INTRON Dh44-R2
3R	25672654	3R_25672654_SNP [dm3] 3R_29846932_SNP [dm6]	T	C	2.649e^-4	0.699	INTRON Cad99C
2R	6875945	2R_6875945_SNP [dm3] 2R_10988440_SNP [dm6]	C	A	2.651e^-4	0.699	INTRON luna
2R	19959973	2R_19959973_SNP [dm3] 2R_24072450_SNP [dm6]	T	C	2.664e^-4	0.699	INTRON CG3209
2L	5457347	2L_5457347_SNP [dm3] 2L_5457347_SNP [dm6]	A	G	2.666e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
2R	15884774	2R_15884774_SNP [dm3] 2R_19997269_SNP [dm6]	G	C	2.668e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4028619	3L_4028619_SNP [dm3] 3L_4028619_SNP [dm6]	T	C	2.668e^-4	0.699	UTR_5_PRIME Gr64b & 1 other DOWNSTREAM Gr64a	TF binding site mE1_TFBS_inv
3R	1794331	3R_1794331_SNP [dm3] 3R_5968609_SNP [dm6]	C	T	2.675e^-4	0.699	INTERGENIC
3L	6125013	3L_6125013_SNP [dm3] 3L_6131913_SNP [dm6]	G	A	2.678e^-4	0.699	UPSTREAM Lcp65Ag3 INTRON Cpr65Au
3R	9911987	3R_9911987_SNP [dm3] 3R_14086265_SNP [dm6]	A	G	2.679e^-4	0.699	INTRON foxo
3R	13638797	3R_13638797_SNP [dm3] 3R_17813075_SNP [dm6]	T	C	2.680e^-4	0.699	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	15745968	2R_15745968_SNP [dm3] 2R_19858463_SNP [dm6]	A	G	2.681e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	8310565	X_8310565_SNP [dm3] X_8416532_SNP [dm6]	C	T	2.700e^-4	0.702	INTRON Trf2	TF binding site BDTNP1_TFBS_dl
3R	9434078	3R_9434078_SNP [dm3] 3R_13608356_SNP [dm6]	A	C	2.703e^-4	0.702	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
3R	17690724	3R_17690724_SNP [dm3] 3R_21865002_SNP [dm6]	C	T	2.707e^-4	0.702	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9932568	X_9932568_SNP [dm3] X_10038535_SNP [dm6]	T	C	2.708e^-4	0.702	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_inv
2R	16244298	2R_16244298_DEL [dm3] 2R_20356793_DEL [dm6]	AAGGGCGA	A	2.710e^-4	0.702	INTERGENIC
2R	14470260	2R_14470260_SNP [dm3] 2R_18582755_SNP [dm6]	T	C	2.714e^-4	0.702	UTR_5_PRIME GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22733234	3R_22733234_SNP [dm3] 3R_26907512_SNP [dm6]	G	A	2.719e^-4	0.702	INTRON T48
X	10753089	X_10753089_SNP [dm3] X_10859056_SNP [dm6]	A	C	2.726e^-4	0.703	SYNONYMOUS_CODING CG2186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13939289	3R_13939289_SNP [dm3] 3R_18113567_SNP [dm6]	G	A	2.728e^-4	0.703	INTRON sr
2L	9195310	2L_9195310_SNP [dm3] 2L_9195310_SNP [dm6]	T	C	2.733e^-4	0.703	INTRON tai	TF binding site mE1_TFBS_Trl
3L	9259846	3L_9259846_SNP [dm3] 3L_9266746_SNP [dm6]	G	A	2.741e^-4	0.703	INTRON GluRIB
X	8709268	X_8709268_SNP [dm3] X_8815235_SNP [dm6]	T	A	2.743e^-4	0.703	INTERGENIC
X	3795223	X_3795223_SNP [dm3] X_3901190_SNP [dm6]	G	A	2.748e^-4	0.703	SYNONYMOUS_CODING CG42541
X	19370076	X_19370076_SNP [dm3] X_19476043_SNP [dm6]	T	A	2.749e^-4	0.703	UTR_3_PRIME CG12200 INTRON CG32533
3L	12600338	3L_12600338_SNP [dm3] 3L_12607238_SNP [dm6]	C	T	2.750e^-4	0.703	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	19634046	2L_19634046_SNP [dm3] 2L_19634046_SNP [dm6]	G	T	2.759e^-4	0.704	INTRON Lar
2L	5457366	2L_5457366_MNP [dm3] 2L_5457366_MNP [dm6]	ACAATT	TGTTAC	2.775e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	9984069	3R_9984069_SNP [dm3] 3R_14158347_SNP [dm6]	T	A	2.784e^-4	0.705	SYNONYMOUS_CODING CG31327 UPSTREAM CG31533
3R	11284725	3R_11284725_SNP [dm3] 3R_15459003_SNP [dm6]	A	T	2.785e^-4	0.705	INTRON AdamTS-A
3R	14443095	3R_14443095_SNP [dm3] 3R_18617373_SNP [dm6]	C	T	2.786e^-4	0.705	SYNONYMOUS_CODING CG7695 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6789660	3L_6789660_SNP [dm3] 3L_6796560_SNP [dm6]	G	A	2.789e^-4	0.705	INTERGENIC
3R	10520248	3R_10520248_SNP [dm3] 3R_14694526_SNP [dm6]	C	T	2.791e^-4	0.705	INTRON Meltrin
2R	11325722	2R_11325722_SNP [dm3] 2R_15438217_SNP [dm6]	A	T	2.799e^-4	0.705	INTRON CG43729	TF binding site BDTNP1_TFBS_hb
3L	10348579	3L_10348579_DEL [dm3] 3L_10355479_DEL [dm6]	TCAAAC	T	2.806e^-4	0.705	INTRON CR44327
2L	5964548	2L_5964548_SNP [dm3] 2L_5964548_SNP [dm6]	C	G	2.813e^-4	0.705	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
X	19656772	X_19656772_SNP [dm3] X_19762739_SNP [dm6]	A	T	2.816e^-4	0.705	UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16118933	2L_16118933_SNP [dm3] 2L_16118933_SNP [dm6]	T	A	2.826e^-4	0.705	INTERGENIC
X	20791723	X_20791723_SNP [dm3] X_20920696_SNP [dm6]	C	T	2.829e^-4	0.705	INTRON shakB
2L	1933442	2L_1933442_SNP [dm3] 2L_1933442_SNP [dm6]	G	T	2.831e^-4	0.705	INTRON CG7337
2L	7319516	2L_7319516_SNP [dm3] 2L_7319516_SNP [dm6]	A	G	2.838e^-4	0.705	INTERGENIC
2R	19502955	2R_19502955_SNP [dm3] 2R_23615432_SNP [dm6]	C	T	2.840e^-4	0.705	UPSTREAM CG4019 INTRON CG17664	TF binding site mE1_TFBS_HSA
3R	21100720	3R_21100720_SNP [dm3] 3R_25274998_SNP [dm6]	T	C	2.843e^-4	0.705	SYNONYMOUS_CODING CG11878 DOWNSTREAM CG10513
2L	9446187	2L_9446187_SNP [dm3] 2L_9446187_SNP [dm6]	C	G	2.852e^-4	0.705	INTRON numb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6644507	2L_6644507_SNP [dm3] 2L_6644507_SNP [dm6]	C	A	2.853e^-4	0.705	INTRON CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19853154	2L_19853154_SNP [dm3] 2L_19853154_SNP [dm6]	C	G	2.854e^-4	0.705	INTRON sick
2R	11881868	2R_11881868_SNP [dm3] 2R_15994363_SNP [dm6]	T	C	2.854e^-4	0.705	SYNONYMOUS_CODING ATPCL DOWNSTREAM CG8320
3L	9031270	3L_9031270_SNP [dm3] 3L_9038170_SNP [dm6]	G	A	2.862e^-4	0.705	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	824536	X_824536_SNP [dm3] X_930503_SNP [dm6]	A	G	2.866e^-4	0.705	UPSTREAM CG3708 DOWNSTREAM CG3706 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9939340	2R_9939340_SNP [dm3] 2R_14051835_SNP [dm6]	A	C	2.871e^-4	0.705	INTRON mam
2L	19853832	2L_19853832_SNP [dm3] 2L_19853832_SNP [dm6]	G	T	2.873e^-4	0.705	INTRON sick
3R	10520090	3R_10520090_SNP [dm3] 3R_14694368_SNP [dm6]	T	A	2.875e^-4	0.705	INTRON Meltrin
2R	6463148	2R_6463148_SNP [dm3] 2R_10575643_SNP [dm6]	C	T	2.878e^-4	0.705	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20721764	2L_20721764_SNP [dm3] 2L_20721764_SNP [dm6]	C	T	2.883e^-4	0.705	UPSTREAM CR45306 INTERGENIC
X	8564376	X_8564376_SNP [dm3] X_8670343_SNP [dm6]	G	A	2.884e^-4	0.705	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12104208	3L_12104208_SNP [dm3] 3L_12111108_SNP [dm6]	C	A	2.884e^-4	0.705	INTERGENIC
3R	9227883	3R_9227883_SNP [dm3] 3R_13402161_SNP [dm6]	T	A	2.893e^-4	0.705	UPSTREAM CG9796 DOWNSTREAM CG33977 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	5926054	2R_5926054_SNP [dm3] 2R_10038549_SNP [dm6]	A	T	2.897e^-4	0.705	INTRON oys	TF binding site BDTNP1_TFBS_dl
3R	14161614	3R_14161614_SNP [dm3] 3R_18335892_SNP [dm6]	T	A	2.898e^-4	0.705	INTRON CG15803
2R	11871534	2R_11871534_SNP [dm3] 2R_15984029_SNP [dm6]	A	T	2.902e^-4	0.705	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2L	8786730	2L_8786730_SNP [dm3] 2L_8786730_SNP [dm6]	G	C	2.916e^-4	0.705	INTERGENIC
2L	3158903	2L_3158903_SNP [dm3] 2L_3158903_SNP [dm6]	A	T	2.921e^-4	0.705	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7641893	2L_7641893_SNP [dm3] 2L_7641893_SNP [dm6]	C	T	2.922e^-4	0.705	DOWNSTREAM Slob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_zfh1
3L	1527916	3L_1527916_SNP [dm3] 3L_1527916_SNP [dm6]	C	T	2.924e^-4	0.705	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4718687	X_4718687_SNP [dm3] X_4824654_SNP [dm6]	G	A	2.932e^-4	0.705	INTERGENIC
3L	8772489	3L_8772489_SNP [dm3] 3L_8779389_SNP [dm6]	C	T	2.941e^-4	0.705	INTRON Fhos	TF binding site mE1_TFBS_cad
2R	8174371	2R_8174371_SNP [dm3] 2R_12286866_SNP [dm6]	A	G	2.945e^-4	0.705	INTRON CG42700
X	8644029	X_8644029_SNP [dm3] X_8749996_SNP [dm6]	T	A	2.949e^-4	0.705	INTERGENIC
3R	23158144	3R_23158144_SNP [dm3] 3R_27332422_SNP [dm6]	T	C	2.956e^-4	0.705	INTERGENIC
X	4589616	X_4589616_DEL [dm3] X_4695583_DEL [dm6]	TGT	T	2.957e^-4	0.705	INTRON ctp
2R	6631768	2R_6631768_SNP [dm3] 2R_10744263_SNP [dm6]	A	G	2.962e^-4	0.705	INTRON CG33144
3R	10560282	3R_10560282_SNP [dm3] 3R_14734560_SNP [dm6]	C	A	2.963e^-4	0.705	INTRON eff	TF binding site mE1_TFBS_Trl
3R	18835144	3R_18835144_DEL [dm3] 3R_23009422_DEL [dm6]	AA	A	2.968e^-4	0.705	INTRON CG34375
2L	9605110	2L_9605110_SNP [dm3] 2L_9605110_SNP [dm6]	T	A	2.976e^-4	0.705	INTERGENIC	regulatory region REDfly_CRMs
3L	4729924	3L_4729924_DEL [dm3] 3L_4729924_DEL [dm6]	GCGTCGA	G	2.978e^-4	0.705	INTRON RhoGEF64C
3R	15621450	3R_15621450_SNP [dm3] 3R_19795728_SNP [dm6]	C	G	2.983e^-4	0.705	INTRON bnl
2L	9604781	2L_9604781_SNP [dm3] 2L_9604781_SNP [dm6]	G	T	2.985e^-4	0.705	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	904768	2L_904768_SNP [dm3] 2L_904768_SNP [dm6]	T	C	2.985e^-4	0.705	DOWNSTREAM CR45261 INTERGENIC
3R	14162553	3R_14162553_SNP [dm3] 3R_18336831_SNP [dm6]	A	T	2.986e^-4	0.705	INTRON CG15803
2L	903958	2L_903958_SNP [dm3] 2L_903958_SNP [dm6]	G	A	2.991e^-4	0.705	UPSTREAM CR45261 INTERGENIC
X	8759477	X_8759477_SNP [dm3] X_8865444_SNP [dm6]	A	G	2.991e^-4	0.705	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	4389168	3R_4389168_DEL [dm3] 3R_8563446_DEL [dm6]	AAA	A	2.994e^-4	0.705	UPSTREAM mRpS18A & 1 other DOWNSTREAM CG31460 EXON CR44291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	5286724	3R_5286724_SNP [dm3] 3R_9461002_SNP [dm6]	G	C	2.995e^-4	0.705	UPSTREAM GstZ2 DOWNSTREAM CG16779 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	5291339	3R_5291339_SNP [dm3] 3R_9465617_SNP [dm6]	T	C	2.997e^-4	0.705	UTR_3_PRIME CG16779
2R	6483445	2R_6483445_SNP [dm3] 2R_10595940_SNP [dm6]	T	A	3.001e^-4	0.705	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	10520508	3R_10520508_SNP [dm3] 3R_14694786_SNP [dm6]	A	G	3.008e^-4	0.705	INTRON Meltrin
2L	5632024	2L_5632024_SNP [dm3] 2L_5632024_SNP [dm6]	A	C	3.008e^-4	0.705	INTRON CG31646 EXON CR44822
3R	23314027	3R_23314027_SNP [dm3] 3R_27488305_SNP [dm6]	T	G	3.022e^-4	0.705	NON_SYNONYMOUS_CODING Gr98a
3L	13158151	3L_13158151_SNP [dm3] 3L_13165051_SNP [dm6]	G	T	3.026e^-4	0.705	INTERGENIC
3R	10331574	3R_10331574_SNP [dm3] 3R_14505852_SNP [dm6]	T	A	3.032e^-4	0.705	INTRON CR44177
2R	19426444	2R_19426444_SNP [dm3] 2R_23538921_SNP [dm6]	A	G	3.032e^-4	0.705	UPSTREAM bw INTRON ppk3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1053262	3R_1053262_SNP [dm3] 3R_5227540_SNP [dm6]	G	A	3.035e^-4	0.705	UTR_3_PRIME Kat60 DOWNSTREAM Vps37B
3L	9286359	3L_9286359_SNP [dm3] 3L_9293259_SNP [dm6]	A	T	3.036e^-4	0.705	INTERGENIC
3R	1042712	3R_1042712_SNP [dm3] 3R_5216990_SNP [dm6]	A	G	3.037e^-4	0.705	START_GAINED cno UTR_5_PRIME cno DOWNSTREAM Prosbeta2R2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10329515	3R_10329515_SNP [dm3] 3R_14503793_SNP [dm6]	C	T	3.039e^-4	0.705	INTRON CR44177	TF binding site mE1_TFBS_cad
3L	7921250	3L_7921250_SNP [dm3] 3L_7928150_SNP [dm6]	C	A	3.043e^-4	0.705	INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13638795	3R_13638795_SNP [dm3] 3R_17813073_SNP [dm6]	T	C	3.046e^-4	0.705	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	10486343	2R_10486343_SNP [dm3] 2R_14598838_SNP [dm6]	A	G	3.047e^-4	0.705	SYNONYMOUS_CODING RpI1
3R	18547454	3R_18547454_SNP [dm3] 3R_22721732_SNP [dm6]	G	A	3.049e^-4	0.705	SYNONYMOUS_CODING Irp-1A UPSTREAM wge	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1019063	2L_1019063_DEL [dm3] 2L_1019063_DEL [dm6]	AAATTTTGGGGA...	A	3.051e^-4	0.705	INTRON IA-2
2R	16427381	2R_16427381_INS [dm3] 2R_20539876_INS [dm6]	T	TT	3.057e^-4	0.705	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16427393	2R_16427393_DEL [dm3] 2R_20539888_DEL [dm6]	AAG	A	3.057e^-4	0.705	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25321020	3R_25321020_SNP [dm3] 3R_29495298_SNP [dm6]	G	T	3.060e^-4	0.705	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	9313631	2L_9313631_SNP [dm3] 2L_9313631_SNP [dm6]	C	T	3.063e^-4	0.705	INTERGENIC
3L	6579227	3L_6579227_SNP [dm3] 3L_6586127_SNP [dm6]	G	T	3.064e^-4	0.705	INTRON CG18769 & 1 other
2R	11147197	2R_11147197_SNP [dm3] 2R_15259692_SNP [dm6]	A	C	3.067e^-4	0.705	SYNONYMOUS_CODING ItgalphaPS4
2L	12284019	2L_12284019_SNP [dm3] 2L_12284019_SNP [dm6]	G	A	3.067e^-4	0.705	INTRON aret
3R	13638874	3R_13638874_SNP [dm3] 3R_17813152_SNP [dm6]	C	T	3.071e^-4	0.705	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	16822515	3L_16822515_SNP [dm3] 3L_16829415_SNP [dm6]	A	T	3.071e^-4	0.705	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3702856	2L_3702856_SNP [dm3] 2L_3702856_SNP [dm6]	C	G	3.091e^-4	0.707	UPSTREAM CG2816 DOWNSTREAM CG43145 EXON CR44311
3L	21196959	3L_21196959_SNP [dm3] 3L_21203859_SNP [dm6]	G	C	3.091e^-4	0.707	UPSTREAM CG33056 & 2 others INTRON CG10512
2L	13573740	2L_13573740_SNP [dm3] 2L_13573740_SNP [dm6]	A	C	3.101e^-4	0.707	INTRON kuz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10252390	X_10252390_SNP [dm3] X_10358357_SNP [dm6]	C	T	3.108e^-4	0.707	NON_SYNONYMOUS_CODING l_1_G0289
3L	6236577	3L_6236577_SNP [dm3] 3L_6243477_SNP [dm6]	C	G	3.112e^-4	0.707	SYNONYMOUS_CODING Mdr65
X	21321224	X_21321224_SNP [dm3] X_21450197_SNP [dm6]	G	A	3.112e^-4	0.707	INTRON CG42343	TF binding site mE1_TFBS_HSA
2L	905339	2L_905339_SNP [dm3] 2L_905339_SNP [dm6]	A	T	3.115e^-4	0.707	DOWNSTREAM CR45261 INTERGENIC
2R	16427418	2R_16427418_SNP [dm3] 2R_20539913_SNP [dm6]	C	T	3.117e^-4	0.707	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12731505	3L_12731505_SNP [dm3] 3L_12738405_SNP [dm6]	C	T	3.118e^-4	0.707	SPLICE_SITE_REGION Ptp69D INTRON Ptp69D
2L	11235044	2L_11235044_SNP [dm3] 2L_11235044_SNP [dm6]	G	A	3.118e^-4	0.707	DOWNSTREAM snoRNA:Me18S-G642 INTRON ab
3L	7800674	3L_7800674_SNP [dm3] 3L_7807574_SNP [dm6]	T	G	3.121e^-4	0.707	INTRON CG32369	TF binding site mE1_TFBS_Trl
2L	12274283	2L_12274283_SNP [dm3] 2L_12274283_SNP [dm6]	T	A	3.124e^-4	0.707	INTRON aret
2L	9605230	2L_9605230_SNP [dm3] 2L_9605230_SNP [dm6]	A	G	3.137e^-4	0.709	INTERGENIC	regulatory region REDfly_CRMs
2L	10115066	2L_10115066_SNP [dm3] 2L_10115066_SNP [dm6]	A	T	3.145e^-4	0.709	INTRON CG44153 & 1 other
2L	10115067	2L_10115067_SNP [dm3] 2L_10115067_SNP [dm6]	C	T	3.145e^-4	0.709	INTRON CG44153 & 1 other
2R	14714183	2R_14714183_SNP [dm3] 2R_18826678_SNP [dm6]	T	A	3.151e^-4	0.709	UPSTREAM CG15097 INTRON CG15097
3L	7625094	3L_7625094_SNP [dm3] 3L_7631994_SNP [dm6]	G	T	3.164e^-4	0.711	INTRON CG33275
2L	5964533	2L_5964533_SNP [dm3] 2L_5964533_SNP [dm6]	A	T	3.174e^-4	0.711	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
3L	12832116	3L_12832116_SNP [dm3] 3L_12839016_SNP [dm6]	G	A	3.178e^-4	0.711	INTRON CG10960
X	16273535	X_16273535_SNP [dm3] X_16379502_SNP [dm6]	A	G	3.179e^-4	0.711	INTRON Fur2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5762556	3R_5762556_SNP [dm3] 3R_9936834_SNP [dm6]	C	A	3.183e^-4	0.711	INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23315516	3R_23315516_SNP [dm3] 3R_27489794_SNP [dm6]	G	A	3.183e^-4	0.711	UTR_3_PRIME Gr98a
3R	23246538	3R_23246538_SNP [dm3] 3R_27420816_SNP [dm6]	T	A	3.189e^-4	0.711	INTRON side
3L	6038842	3L_6038842_SNP [dm3] 3L_6045742_SNP [dm6]	G	A	3.190e^-4	0.711	INTERGENIC
3R	8661060	3R_8661060_SNP [dm3] 3R_12835338_SNP [dm6]	T	C	3.193e^-4	0.711	INTERGENIC
2L	15431685	2L_15431685_SNP [dm3] 2L_15431685_SNP [dm6]	T	C	3.200e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10044631	X_10044631_SNP [dm3] X_10150598_SNP [dm6]	C	T	3.200e^-4	0.711	INTRON CR44894
2L	903860	2L_903860_SNP [dm3] 2L_903860_SNP [dm6]	T	C	3.202e^-4	0.711	UPSTREAM CR45261 INTERGENIC
3L	9178748	3L_9178748_SNP [dm3] 3L_9185648_SNP [dm6]	G	A	3.206e^-4	0.711	INTERGENIC
2R	8984173	2R_8984173_SNP [dm3] 2R_13096668_SNP [dm6]	G	A	3.213e^-4	0.711	INTERGENIC
2R	13236600	2R_13236600_SNP [dm3] 2R_17349095_SNP [dm6]	C	A	3.226e^-4	0.714	INTRON mbl
2R	11147196	2R_11147196_SNP [dm3] 2R_15259691_SNP [dm6]	C	A	3.233e^-4	0.714	NON_SYNONYMOUS_CODING ItgalphaPS4
X	4582013	X_4582013_SNP [dm3] X_4687980_SNP [dm6]	C	T	3.237e^-4	0.714	START_GAINED ctp UTR_5_PRIME ctp UPSTREAM ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4012147	3L_4012147_SNP [dm3] 3L_4012147_SNP [dm6]	C	G	3.250e^-4	0.714	INTERGENIC
X	6893009	X_6893009_SNP [dm3] X_6998976_SNP [dm6]	G	T	3.257e^-4	0.714	START_GAINED Inx2 UTR_5_PRIME Inx2 INTRON Inx7	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5989680	3L_5989680_SNP [dm3] 3L_5996580_SNP [dm6]	G	T	3.261e^-4	0.714	UPSTREAM PVRAP INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10115078	2L_10115078_SNP [dm3] 2L_10115078_SNP [dm6]	A	C	3.261e^-4	0.714	INTRON CG44153 & 1 other
3R	11213226	3R_11213226_SNP [dm3] 3R_15387504_SNP [dm6]	C	T	3.266e^-4	0.714	INTRON Rbp	TF binding site mE1_TFBS_cad
2R	18436332	2R_18436332_DEL [dm3] 2R_22548827_DEL [dm6]	GGTGCAG	G	3.271e^-4	0.714	INTRON px
2L	12528354	2L_12528354_SNP [dm3] 2L_12528354_SNP [dm6]	A	G	3.278e^-4	0.714	INTRON bun
3L	2730931	3L_2730931_SNP [dm3] 3L_2730931_SNP [dm6]	C	G	3.286e^-4	0.714	INTRON Mrtf
3L	16216480	3L_16216480_SNP [dm3] 3L_16223380_SNP [dm6]	C	T	3.289e^-4	0.714	INTERGENIC
3R	13638840	3R_13638840_DEL [dm3] 3R_17813118_DEL [dm6]	AATATCTATA	A	3.299e^-4	0.714	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	7429732	3L_7429732_SNP [dm3] 3L_7436632_SNP [dm6]	A	C	3.313e^-4	0.714	DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4684800	2R_4684800_INS [dm3] 2R_8797295_INS [dm6]	T	TGTATGT	3.340e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4587157	X_4587157_SNP [dm3] X_4693124_SNP [dm6]	G	T	3.352e^-4	0.714	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	15651215	3R_15651215_SNP [dm3] 3R_19825493_SNP [dm6]	A	C	3.352e^-4	0.714	INTRON bnl
2R	17382595	2R_17382595_SNP [dm3] 2R_21495090_SNP [dm6]	A	T	3.365e^-4	0.714	INTRON Fkbp14
3L	16407283	3L_16407283_SNP [dm3] 3L_16414183_SNP [dm6]	C	T	3.367e^-4	0.714	NON_SYNONYMOUS_CODING TMS1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3702852	2L_3702852_SNP [dm3] 2L_3702852_SNP [dm6]	C	T	3.375e^-4	0.714	UPSTREAM CG2816 DOWNSTREAM CG43145 EXON CR44311
X	9206317	X_9206317_SNP [dm3] X_9312284_SNP [dm6]	T	A	3.376e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8388152	2R_8388152_SNP [dm3] 2R_12500647_SNP [dm6]	T	G	3.385e^-4	0.714	NON_SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12962850	2L_12962850_SNP [dm3] 2L_12962850_SNP [dm6]	G	A	3.390e^-4	0.714	INTERGENIC
2L	7641895	2L_7641895_SNP [dm3] 2L_7641895_SNP [dm6]	T	C	3.390e^-4	0.714	DOWNSTREAM Slob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_zfh1
3R	9731770	3R_9731770_SNP [dm3] 3R_13906048_SNP [dm6]	T	C	3.395e^-4	0.714	INTERGENIC
3R	27797741	3R_27797741_SNP [dm3] 3R_31972019_SNP [dm6]	C	A	3.396e^-4	0.714	INTRON heph	transposable element FlyBase
2R	10348798	2R_10348798_SNP [dm3] 2R_14461293_SNP [dm6]	C	G	3.396e^-4	0.714	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	3782771	2L_3782771_SNP [dm3] 2L_3782771_SNP [dm6]	A	G	3.399e^-4	0.714	SYNONYMOUS_CODING bowl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19634152	2L_19634152_SNP [dm3] 2L_19634152_SNP [dm6]	C	T	3.400e^-4	0.714	INTRON Lar
X	8564396	X_8564396_SNP [dm3] X_8670363_SNP [dm6]	A	G	3.400e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_sens
X	8477112	X_8477112_SNP [dm3] X_8583079_SNP [dm6]	C	A	3.404e^-4	0.714	INTRON CG12065
3L	12956993	3L_12956993_SNP [dm3] 3L_12963893_SNP [dm6]	C	T	3.407e^-4	0.714	DOWNSTREAM Or69a INTERGENIC
2R	18651258	2R_18651258_SNP [dm3] 2R_22763753_SNP [dm6]	C	A	3.411e^-4	0.714	UTR_5_PRIME CG13527 INTRON CG42260
3R	10595318	3R_10595318_SNP [dm3] 3R_14769596_SNP [dm6]	G	A	3.413e^-4	0.714	INTRON jvl
2L	3158442	2L_3158442_SNP [dm3] 2L_3158442_SNP [dm6]	T	C	3.415e^-4	0.714	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	22542882	3L_22542882_SNP [dm3] 3L_22549782_SNP [dm6]	C	G	3.419e^-4	0.714	UPSTREAM Trxr-2 DOWNSTREAM CG11404 INTERGENIC
3L	19897634	3L_19897634_SNP [dm3] 3L_19904534_SNP [dm6]	T	A	3.426e^-4	0.714	INTRON Mi-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	21182306	X_21182306_SNP [dm3] X_21311279_SNP [dm6]	T	A	3.443e^-4	0.714	NON_SYNONYMOUS_CODING CG1801
2R	5907326	2R_5907326_SNP [dm3] 2R_10019821_SNP [dm6]	A	C	3.445e^-4	0.714	INTRON Pka-R2
X	19367522	X_19367522_SNP [dm3] X_19473489_SNP [dm6]	C	T	3.450e^-4	0.714	DOWNSTREAM CG32533 INTERGENIC
3L	7429725	3L_7429725_SNP [dm3] 3L_7436625_SNP [dm6]	T	A	3.453e^-4	0.714	DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14902318	2L_14902318_SNP [dm3] 2L_14902318_SNP [dm6]	A	C	3.454e^-4	0.714	INTERGENIC
3L	6236775	3L_6236775_SNP [dm3] 3L_6243675_SNP [dm6]	A	G	3.456e^-4	0.714	SYNONYMOUS_CODING Mdr65
2R	11880536	2R_11880536_SNP [dm3] 2R_15993031_SNP [dm6]	C	T	3.462e^-4	0.714	SYNONYMOUS_CODING CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site mE1_TFBS_sens
2R	9776677	2R_9776677_SNP [dm3] 2R_13889172_SNP [dm6]	T	C	3.464e^-4	0.714	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22247923	3R_22247923_SNP [dm3] 3R_26422201_SNP [dm6]	A	C	3.464e^-4	0.714	INTERGENIC
2R	6726168	2R_6726168_SNP [dm3] 2R_10838663_SNP [dm6]	T	C	3.466e^-4	0.714	UTR_5_PRIME CG7686 DOWNSTREAM CG30015	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8623198	2L_8623198_SNP [dm3] 2L_8623198_SNP [dm6]	T	C	3.473e^-4	0.714	INTRON Sema-1a
2R	16809617	2R_16809617_DEL [dm3] 2R_20922112_DEL [dm6]	GCCA	T	3.474e^-4	0.714	INTRON Rx
2R	16531365	2R_16531365_SNP [dm3] 2R_20643860_SNP [dm6]	C	T	3.484e^-4	0.714	UPSTREAM DMAP1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	2594261	X_2594261_SNP [dm3] X_2700228_SNP [dm6]	G	C	3.499e^-4	0.714	NON_SYNONYMOUS_CODING CG2662 DOWNSTREAM Csat	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16531429	2R_16531429_SNP [dm3] 2R_20643924_SNP [dm6]	A	C	3.500e^-4	0.714	UPSTREAM DMAP1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	16998147	3R_16998147_SNP [dm3] 3R_21172425_SNP [dm6]	C	A	3.503e^-4	0.714	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13638902	3R_13638902_SNP [dm3] 3R_17813180_SNP [dm6]	T	G	3.505e^-4	0.714	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	15685470	2R_15685470_SNP [dm3] 2R_19797965_SNP [dm6]	G	A	3.508e^-4	0.714	INTERGENIC
2R	20172762	2R_20172762_SNP [dm3] 2R_24285239_SNP [dm6]	G	A	3.510e^-4	0.714	INTRON nvy
3L	12731519	3L_12731519_SNP [dm3] 3L_12738419_SNP [dm6]	T	A	3.512e^-4	0.714	INTRON Ptp69D
2R	14346376	2R_14346376_SNP [dm3] 2R_18458871_SNP [dm6]	T	A	3.525e^-4	0.714	DOWNSTREAM CG30116 INTRON CG30116
2R	4429346	2R_4429346_SNP [dm3] 2R_8541841_SNP [dm6]	C	A	3.528e^-4	0.714	DOWNSTREAM CR44279 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13041568	X_13041568_SNP [dm3] X_13147535_SNP [dm6]	T	A	3.528e^-4	0.714	INTRON CG32645
2R	9775940	2R_9775940_SNP [dm3] 2R_13888435_SNP [dm6]	A	T	3.537e^-4	0.714	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2R	17921819	2R_17921819_SNP [dm3] 2R_22034314_SNP [dm6]	C	T	3.542e^-4	0.714	UPSTREAM CG9308 INTRON CG34370
3L	24296231	3L_24296231_SNP [dm3] 3L_24303131_SNP [dm6]	G	A	3.543e^-4	0.714	INTERGENIC
2R	19799641	2R_19799641_SNP [dm3] 2R_23912118_SNP [dm6]	G	C	3.543e^-4	0.714	INTRON kcc
X	8344648	X_8344648_SNP [dm3] X_8450615_SNP [dm6]	C	T	3.544e^-4	0.714	INTRON org-1
X	9154223	X_9154223_SNP [dm3] X_9260190_SNP [dm6]	G	A	3.553e^-4	0.714	UPSTREAM ric8b DOWNSTREAM ric8a EXON CR17438
3L	9028157	3L_9028157_INS [dm3] 3L_9035057_INS [dm6]	T	TCTAAGT	3.553e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5769355	2L_5769355_SNP [dm3] 2L_5769355_SNP [dm6]	G	A	3.553e^-4	0.714	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3R	21127016	3R_21127016_SNP [dm3] 3R_25301294_SNP [dm6]	T	A	3.555e^-4	0.714	SYNONYMOUS_CODING CG13659
3L	11625495	3L_11625495_SNP [dm3] 3L_11632395_SNP [dm6]	T	C	3.558e^-4	0.714	DOWNSTREAM CR45158 INTRON CG32091
2R	18436323	2R_18436323_DEL [dm3] 2R_22548818_DEL [dm6]	ATC	A	3.560e^-4	0.714	INTRON px
3R	23313760	3R_23313760_SNP [dm3] 3R_27488038_SNP [dm6]	A	G	3.563e^-4	0.714	START_GAINED Gr98a UTR_5_PRIME Gr98a
2L	6763463	2L_6763463_SNP [dm3] 2L_6763463_SNP [dm6]	T	A	3.564e^-4	0.714	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5845184	3L_5845184_SNP [dm3] 3L_5852084_SNP [dm6]	A	C	3.568e^-4	0.714	INTERGENIC
2R	14870557	2R_14870557_SNP [dm3] 2R_18983052_SNP [dm6]	C	A	3.571e^-4	0.714	INTERGENIC
3R	18618340	3R_18618340_SNP [dm3] 3R_22792618_SNP [dm6]	T	A	3.577e^-4	0.714	INTRON CG7029	TF binding site mE1_TFBS_cad
2L	1933556	2L_1933556_SNP [dm3] 2L_1933556_SNP [dm6]	G	A	3.582e^-4	0.714	INTRON CG7337
2L	19851530	2L_19851530_SNP [dm3] 2L_19851530_SNP [dm6]	G	A	3.585e^-4	0.714	INTRON sick
2R	11865897	2R_11865897_SNP [dm3] 2R_15978392_SNP [dm6]	T	A	3.586e^-4	0.714	NON_SYNONYMOUS_CODING Strn-Mlck
3L	10348578	3L_10348578_INS [dm3] 3L_10355478_INS [dm6]	T	TGGCATGGA	3.591e^-4	0.714	INTRON CR44327
3R	23273092	3R_23273092_SNP [dm3] 3R_27447370_SNP [dm6]	T	C	3.596e^-4	0.714	INTERGENIC
3R	10518218	3R_10518218_SNP [dm3] 3R_14692496_SNP [dm6]	C	T	3.597e^-4	0.714	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10235773	X_10235773_SNP [dm3] X_10341740_SNP [dm6]	T	G	3.600e^-4	0.714	INTRON CG43740
3L	3157030	3L_3157030_SNP [dm3] 3L_3157030_SNP [dm6]	C	T	3.601e^-4	0.714	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5985848	2R_5985848_SNP [dm3] 2R_10098343_SNP [dm6]	A	T	3.601e^-4	0.714	NON_SYNONYMOUS_CODING Jra UTR_3_PRIME Jra DOWNSTREAM RpLP0-like
2R	16244296	2R_16244296_SNP [dm3] 2R_20356791_SNP [dm6]	C	G	3.627e^-4	0.714	INTERGENIC
2L	5964574	2L_5964574_SNP [dm3] 2L_5964574_SNP [dm6]	C	T	3.634e^-4	0.714	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd	TF binding site mE1_TFBS_cad
2L	3787372	2L_3787372_SNP [dm3] 2L_3787372_SNP [dm6]	A	G	3.636e^-4	0.714	INTRON CG3921	TF binding site mE1_TFBS_Trl
2L	3453105	2L_3453105_SNP [dm3] 2L_3453105_SNP [dm6]	A	G	3.637e^-4	0.714	NON_SYNONYMOUS_CODING CG12795 DOWNSTREAM Snx1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13773493	3R_13773493_SNP [dm3] 3R_17947771_SNP [dm6]	C	T	3.638e^-4	0.714	INTRON cpo
2L	11293796	2L_11293796_SNP [dm3] 2L_11293796_SNP [dm6]	A	T	3.641e^-4	0.714	INTERGENIC
3L	2383086	3L_2383086_SNP [dm3] 3L_2383086_SNP [dm6]	T	A	3.642e^-4	0.714	INTRON CG45186
3R	14713575	3R_14713575_SNP [dm3] 3R_18887853_SNP [dm6]	C	T	3.649e^-4	0.714	INTERGENIC
3L	11436127	3L_11436127_MNP [dm3] 3L_11443027_MNP [dm6]	ATA	CAC	3.655e^-4	0.714	INTERGENIC
X	4718686	X_4718686_SNP [dm3] X_4824653_SNP [dm6]	A	T	3.660e^-4	0.714	INTERGENIC
2L	14692995	2L_14692995_SNP [dm3] 2L_14692995_SNP [dm6]	G	A	3.663e^-4	0.714	INTERGENIC
3R	13638893	3R_13638893_SNP [dm3] 3R_17813171_SNP [dm6]	G	A	3.664e^-4	0.714	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3R	5690038	3R_5690038_SNP [dm3] 3R_9864316_SNP [dm6]	A	G	3.669e^-4	0.714	INTRON Teh1
3L	2402836	3L_2402836_SNP [dm3] 3L_2402836_SNP [dm6]	A	C	3.676e^-4	0.714	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6410380	2R_6410380_DEL [dm3] 2R_10522875_DEL [dm6]	GCTG	G	3.682e^-4	0.714	CODON_DELETION lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12527427	2L_12527427_SNP [dm3] 2L_12527427_SNP [dm6]	T	A	3.691e^-4	0.714	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	2018223	3L_2018223_SNP [dm3] 3L_2018223_SNP [dm6]	T	A	3.691e^-4	0.714	INTERGENIC
3R	17248617	3R_17248617_SNP [dm3] 3R_21422895_SNP [dm6]	A	G	3.692e^-4	0.714	INTRON lbl
3R	5302470	3R_5302470_SNP [dm3] 3R_9476748_SNP [dm6]	C	T	3.692e^-4	0.714	INTRON CG16779
3L	1441148	3L_1441148_SNP [dm3] 3L_1441148_SNP [dm6]	A	C	3.693e^-4	0.714	INTRON Ptp61F
2R	10343938	2R_10343938_SNP [dm3] 2R_14456433_SNP [dm6]	G	A	3.693e^-4	0.714	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23314394	3R_23314394_SNP [dm3] 3R_27488672_SNP [dm6]	T	A	3.704e^-4	0.714	NON_SYNONYMOUS_CODING Gr98a
X	5230405	X_5230405_SNP [dm3] X_5336372_SNP [dm6]	T	G	3.704e^-4	0.714	INTERGENIC
3L	11356041	3L_11356041_SNP [dm3] 3L_11362941_SNP [dm6]	T	C	3.707e^-4	0.714	SYNONYMOUS_CODING CG6163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9605071	2L_9605071_SNP [dm3] 2L_9605071_SNP [dm6]	G	C	3.710e^-4	0.714	INTERGENIC	regulatory region REDfly_CRMs
2R	20367852	2R_20367852_SNP [dm3] 2R_24480329_SNP [dm6]	T	C	3.722e^-4	0.714	INTRON CG13579
3R	10576229	3R_10576229_SNP [dm3] 3R_14750507_SNP [dm6]	T	G	3.723e^-4	0.714	INTRON jvl & 1 other
2R	13810730	2R_13810730_SNP [dm3] 2R_17923225_SNP [dm6]	T	C	3.724e^-4	0.714	INTRON Elk	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7796964	3L_7796964_SNP [dm3] 3L_7803864_SNP [dm6]	T	C	3.725e^-4	0.714	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8550744	X_8550744_SNP [dm3] X_8656711_SNP [dm6]	C	G	3.727e^-4	0.714	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA
2L	11233148	2L_11233148_SNP [dm3] 2L_11233148_SNP [dm6]	C	T	3.733e^-4	0.714	INTRON ab
3L	2281745	3L_2281745_SNP [dm3] 3L_2281745_SNP [dm6]	C	T	3.736e^-4	0.714	INTERGENIC
3R	14161271	3R_14161271_SNP [dm3] 3R_18335549_SNP [dm6]	T	G	3.737e^-4	0.714	INTRON CG15803
2L	3158318	2L_3158318_SNP [dm3] 2L_3158318_SNP [dm6]	A	G	3.742e^-4	0.714	INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3R	23267896	3R_23267896_SNP [dm3] 3R_27442174_SNP [dm6]	C	T	3.743e^-4	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7321599	2L_7321599_DEL [dm3] 2L_7321599_DEL [dm6]	TGTT	T	3.745e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_inv
X	19657097	X_19657097_INS [dm3] X_19763064_INS [dm6]	A	AA	3.755e^-4	0.714	UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10088942	2R_10088942_DEL [dm3] 2R_14201437_DEL [dm6]	TTGTAT	T	3.761e^-4	0.714	UTR_3_PRIME Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11126916	2R_11126916_SNP [dm3] 2R_15239411_SNP [dm6]	T	A	3.767e^-4	0.714	INTRON Fs
3L	10253413	3L_10253413_SNP [dm3] 3L_10260313_SNP [dm6]	C	T	3.771e^-4	0.714	INTERGENIC
3L	6112276	3L_6112276_SNP [dm3] 3L_6119176_SNP [dm6]	T	A	3.775e^-4	0.714	INTRON Ets65A
3L	8543706	3L_8543706_SNP [dm3] 3L_8550606_SNP [dm6]	A	T	3.779e^-4	0.714	INTRON rhea
3L	6117264	3L_6117264_SNP [dm3] 3L_6124164_SNP [dm6]	A	T	3.782e^-4	0.714	SYNONYMOUS_CODING l_3_mbn DOWNSTREAM Ets65A
2R	16357363	2R_16357363_DEL [dm3] 2R_20469858_DEL [dm6]	AGCTGCA	A	3.783e^-4	0.714	INTRON CG12484
3L	6388819	3L_6388819_DEL [dm3] 3L_6395719_DEL [dm6]	TT	G	3.785e^-4	0.714	INTERGENIC	TF binding site mE1_TFBS_inv
2R	5019819	2R_5019819_SNP [dm3] 2R_9132314_SNP [dm6]	A	T	3.789e^-4	0.714	UPSTREAM Hydr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	17690743	3R_17690743_INS [dm3] 3R_21865021_INS [dm6]	A	AAGAATTTAA	3.792e^-4	0.714	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10683435	2L_10683435_SNP [dm3] 2L_10683435_SNP [dm6]	C	T	3.794e^-4	0.714	UTR_3_PRIME CG7299 DOWNSTREAM CG17107 & 1 other
2R	8370677	2R_8370677_SNP [dm3] 2R_12483172_SNP [dm6]	C	T	3.795e^-4	0.714	INTRON Dh44-R2
3L	12562853	3L_12562853_SNP [dm3] 3L_12569753_SNP [dm6]	T	C	3.796e^-4	0.714	INTRON sowah	TF binding site BDTNP1_TFBS_twi
3R	22732701	3R_22732701_SNP [dm3] 3R_26906979_SNP [dm6]	C	T	3.797e^-4	0.714	INTRON T48	regulatory region REDfly_CRMs
3R	4861376	3R_4861376_SNP [dm3] 3R_9035654_SNP [dm6]	C	T	3.799e^-4	0.714	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7921277	3L_7921277_SNP [dm3] 3L_7928177_SNP [dm6]	G	A	3.804e^-4	0.714	SPLICE_SITE_REGION syd INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13150609	3L_13150609_SNP [dm3] 3L_13157509_SNP [dm6]	T	A	3.814e^-4	0.714	INTERGENIC
3R	13985109	3R_13985109_SNP [dm3] 3R_18159387_SNP [dm6]	T	C	3.820e^-4	0.714	SYNONYMOUS_CODING CG14315 EXON CR45104
3R	16558090	3R_16558090_SNP [dm3] 3R_20732368_SNP [dm6]	G	A	3.825e^-4	0.714	SYNONYMOUS_CODING CG31205
X	4590894	X_4590894_SNP [dm3] X_4696861_SNP [dm6]	T	A	3.827e^-4	0.714	INTRON ctp
2L	22141303	2L_22141303_SNP [dm3] 2L_22141303_SNP [dm6]	A	T	3.842e^-4	0.714	INTRON CG42748
3R	15608954	3R_15608954_DEL [dm3] 3R_19783232_DEL [dm6]	AGATTAGATTGTGTAATTAA...	A	3.842e^-4	0.714	UPSTREAM CG11453 DOWNSTREAM CG11407 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9557217	2L_9557217_SNP [dm3] 2L_9557217_SNP [dm6]	T	C	3.842e^-4	0.714	INTRON jp
2R	14937640	2R_14937640_SNP [dm3] 2R_19050135_SNP [dm6]	G	C	3.844e^-4	0.714	INTERGENIC
2R	14935532	2R_14935532_SNP [dm3] 2R_19048027_SNP [dm6]	T	C	3.847e^-4	0.714	INTERGENIC
3R	6426639	3R_6426639_SNP [dm3] 3R_10600917_SNP [dm6]	T	C	3.849e^-4	0.714	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9730330	3R_9730330_SNP [dm3] 3R_13904608_SNP [dm6]	A	T	3.850e^-4	0.714	UTR_3_PRIME ems
X	4597287	X_4597287_DEL [dm3] X_4703254_DEL [dm6]	CGCCATAAATTAGCC...	C	3.852e^-4	0.714	INTRON l_1_G0334	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24876180	3R_24876180_SNP [dm3] 3R_29050458_SNP [dm6]	G	A	3.855e^-4	0.714	UPSTREAM CG11841 INTRON CG11837
3L	17774564	3L_17774564_SNP [dm3] 3L_17781464_SNP [dm6]	A	G	3.856e^-4	0.714	INTERGENIC
2R	19940891	2R_19940891_SNP [dm3] 2R_24053368_SNP [dm6]	C	A	3.857e^-4	0.714	SPLICE_SITE_REGION ppk29 DOWNSTREAM sei INTRON ppk29

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.140e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.06692

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	6.0222	0.0492

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1899 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	18159145	3R_18159145_SNP [dm3] 3R_22333423_SNP [dm6]	T	C	3.449e^-7	0.647	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
X	8475723	X_8475723_SNP [dm3] X_8581690_SNP [dm6]	C	T	3.772e^-6	0.957	INTRON CG12065
3R	18159373	3R_18159373_SNP [dm3] 3R_22333651_SNP [dm6]	T	C	4.318e^-6	0.957	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG5388
3R	17223682	3R_17223682_SNP [dm3] 3R_21397960_SNP [dm6]	G	C	4.428e^-6	0.957	NON_SYNONYMOUS_CODING CG6475
3R	13782821	3R_13782821_MNP [dm3] 3R_17957099_MNP [dm6]	AGAT	TTTC	4.439e^-6	0.957	INTRON cpo
3R	13782826	3R_13782826_MNP [dm3] 3R_17957104_MNP [dm6]	AAC	TTT	4.439e^-6	0.957	INTRON cpo
3R	23774283	3R_23774283_SNP [dm3] 3R_27948561_SNP [dm6]	A	G	4.942e^-6	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9436098	3L_9436098_SNP [dm3] 3L_9442998_SNP [dm6]	T	A	5.020e^-6	0.957	UPSTREAM CG33926 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	13215783	3L_13215783_SNP [dm3] 3L_13222683_SNP [dm6]	G	C	5.138e^-6	0.957	INTERGENIC
3R	25071074	3R_25071074_SNP [dm3] 3R_29245352_SNP [dm6]	G	A	5.538e^-6	0.957	UPSTREAM CG31445 INTRON SP1029	TF binding site mE1_TFBS_cad
X	8914959	X_8914959_SNP [dm3] X_9020926_SNP [dm6]	G	A	7.520e^-6	0.957	SYNONYMOUS_CODING rdgA INTRON CR43836
2L	4639993	2L_4639993_SNP [dm3] 2L_4639993_SNP [dm6]	A	T	8.226e^-6	0.957	INTERGENIC
3R	13782813	3R_13782813_DEL [dm3] 3R_17957091_DEL [dm6]	TACAAA	T	8.724e^-6	0.957	INTRON cpo
3L	11162963	3L_11162963_SNP [dm3] 3L_11169863_SNP [dm6]	T	C	9.662e^-6	0.957	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27455309	3R_27455309_SNP [dm3] 3R_31629587_SNP [dm6]	A	G	9.924e^-6	0.957	INTRON kek6
3R	19914307	3R_19914307_SNP [dm3] 3R_24088585_SNP [dm6]	A	G	1.045e^-5	0.957	INTRON 4EHP
3R	27455308	3R_27455308_SNP [dm3] 3R_31629586_SNP [dm6]	A	G	1.219e^-5	0.957	INTRON kek6
3R	10058466	3R_10058466_SNP [dm3] 3R_14232744_SNP [dm6]	C	T	1.229e^-5	0.957	INTERGENIC
3R	14403879	3R_14403879_SNP [dm3] 3R_18578157_SNP [dm6]	A	G	1.261e^-5	0.957	INTRON fray & 1 other
3L	14223225	3L_14223225_SNP [dm3] 3L_14230125_SNP [dm6]	C	A	1.299e^-5	0.957	INTRON nuf
3R	19914305	3R_19914305_SNP [dm3] 3R_24088583_SNP [dm6]	A	G	1.369e^-5	0.957	INTRON 4EHP
X	15132716	X_15132716_SNP [dm3] X_15238683_SNP [dm6]	T	G	1.389e^-5	0.957	INTERGENIC
2R	18570712	2R_18570712_DEL [dm3] 2R_22683207_DEL [dm6]	GGCCCG	G	1.393e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_sens
3R	23774318	3R_23774318_SNP [dm3] 3R_27948596_SNP [dm6]	A	G	1.427e^-5	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16562368	2R_16562368_SNP [dm3] 2R_20674863_SNP [dm6]	G	A	1.427e^-5	0.957	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4979121	3L_4979121_SNP [dm3] 3L_4979121_SNP [dm6]	A	G	1.527e^-5	0.957	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23774290	3R_23774290_SNP [dm3] 3R_27948568_SNP [dm6]	C	A	1.559e^-5	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2131803	2R_2131803_SNP [dm3] 2R_6244298_SNP [dm6]	G	T	1.584e^-5	0.957	INTRON Pld
3R	23774274	3R_23774274_SNP [dm3] 3R_27948552_SNP [dm6]	T	C	1.733e^-5	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13260591	2L_13260591_SNP [dm3] 2L_13260591_SNP [dm6]	C	T	1.898e^-5	0.957	UPSTREAM CG31730 & 1 other INTERGENIC
3L	2315161	3L_2315161_SNP [dm3] 3L_2315161_SNP [dm6]	G	A	1.963e^-5	0.957	INTERGENIC
X	8079306	X_8079306_SNP [dm3] X_8185273_SNP [dm6]	T	C	2.008e^-5	0.957	INTRON sdt
2R	16467546	2R_16467546_SNP [dm3] 2R_20580041_SNP [dm6]	A	G	2.009e^-5	0.957	INTRON qsm
2R	13851502	2R_13851502_SNP [dm3] 2R_17963997_SNP [dm6]	T	C	2.035e^-5	0.957	INTERGENIC
3L	8325186	3L_8325186_SNP [dm3] 3L_8332086_SNP [dm6]	C	G	2.072e^-5	0.957	INTERGENIC
3L	22596983	3L_22596983_SNP [dm3] 3L_22603883_SNP [dm6]	C	T	2.110e^-5	0.957	INTRON CG14459
2L	4364814	2L_4364814_INS [dm3] 2L_4364814_INS [dm6]	C	CAGA	2.124e^-5	0.957	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19859377	X_19859377_SNP [dm3] X_19965344_SNP [dm6]	T	C	2.312e^-5	0.957	SYNONYMOUS_CODING Nep3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8475805	X_8475805_SNP [dm3] X_8581772_SNP [dm6]	T	C	2.368e^-5	0.957	INTRON CG12065
3R	14403880	3R_14403880_SNP [dm3] 3R_18578158_SNP [dm6]	C	T	2.385e^-5	0.957	INTRON fray & 1 other
2L	6145354	2L_6145354_SNP [dm3] 2L_6145354_SNP [dm6]	G	A	2.422e^-5	0.957	DOWNSTREAM CG13991 INTERGENIC
2R	10962634	2R_10962634_SNP [dm3] 2R_15075129_SNP [dm6]	G	T	2.587e^-5	0.957	INTERGENIC
3R	16956968	3R_16956968_SNP [dm3] 3R_21131246_SNP [dm6]	G	T	2.818e^-5	0.957	NON_SYNONYMOUS_CODING Ice2 START_GAINED Ice2 UTR_5_PRIME Ice2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16953230	2R_16953230_SNP [dm3] 2R_21065725_SNP [dm6]	G	T	2.872e^-5	0.957	SYNONYMOUS_CODING Cht4 UPSTREAM Cht12	TF binding site mE1_TFBS_cad
3R	19914279	3R_19914279_SNP [dm3] 3R_24088557_SNP [dm6]	T	G	2.905e^-5	0.957	INTRON 4EHP
3R	11206710	3R_11206710_SNP [dm3] 3R_15380988_SNP [dm6]	T	C	2.940e^-5	0.957	DOWNSTREAM h-cup INTRON Rbp
3L	8163511	3L_8163511_SNP [dm3] 3L_8170411_SNP [dm6]	C	G	3.026e^-5	0.957	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	4819005	2L_4819005_DEL [dm3] 2L_4819005_DEL [dm6]	CGTCGATTCC	C	3.207e^-5	0.957	UPSTREAM CG3225 INTERGENIC
X	768139	X_768139_SNP [dm3] X_874106_SNP [dm6]	T	A	3.238e^-5	0.957	INTRON CG43867	TF binding site mE1_TFBS_chinmo
3L	6089335	3L_6089335_SNP [dm3] 3L_6096235_SNP [dm6]	A	G	3.377e^-5	0.957	SYNONYMOUS_CODING loj
3R	23774301	3R_23774301_SNP [dm3] 3R_27948579_SNP [dm6]	T	A	3.389e^-5	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14552562	3L_14552562_SNP [dm3] 3L_14559462_SNP [dm6]	G	C	3.392e^-5	0.957	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC
3R	27456476	3R_27456476_DEL [dm3] 3R_31630754_DEL [dm6]	GCCCAGCGGTAGGG...	G	3.414e^-5	0.957	INTRON kek6
X	21007024	X_21007024_SNP [dm3] X_21135997_SNP [dm6]	A	C	3.436e^-5	0.957	INTRON CG34120
3R	3847255	3R_3847255_SNP [dm3] 3R_8021533_SNP [dm6]	A	T	3.530e^-5	0.957	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad
3L	17238518	3L_17238518_SNP [dm3] 3L_17245418_SNP [dm6]	A	C	3.627e^-5	0.957	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
3R	20367708	3R_20367708_SNP [dm3] 3R_24541986_SNP [dm6]	G	T	3.831e^-5	0.957	INTRON CG5789
3R	23774336	3R_23774336_SNP [dm3] 3R_27948614_SNP [dm6]	G	A	3.914e^-5	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	19055659	2R_19055659_SNP [dm3] 2R_23168136_SNP [dm6]	C	T	3.919e^-5	0.957	NON_SYNONYMOUS_CODING CG34371	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17383770	3R_17383770_SNP [dm3] 3R_21558048_SNP [dm6]	G	A	4.025e^-5	0.957	UPSTREAM slou INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23774323	3R_23774323_SNP [dm3] 3R_27948601_SNP [dm6]	C	T	4.120e^-5	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16466867	2R_16466867_SNP [dm3] 2R_20579362_SNP [dm6]	A	C	4.145e^-5	0.957	INTRON qsm
2R	9574134	2R_9574134_SNP [dm3] 2R_13686629_SNP [dm6]	A	T	4.145e^-5	0.957	INTRON fas
2R	6994678	2R_6994678_SNP [dm3] 2R_11107173_SNP [dm6]	C	A	4.168e^-5	0.957	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl
X	16004107	X_16004107_SNP [dm3] X_16110074_SNP [dm6]	C	A	4.235e^-5	0.957	INTERGENIC
3R	16026162	3R_16026162_SNP [dm3] 3R_20200440_SNP [dm6]	C	A	4.278e^-5	0.957	INTERGENIC
2R	9574132	2R_9574132_SNP [dm3] 2R_13686627_SNP [dm6]	C	A	4.395e^-5	0.957	INTRON fas
2L	11833795	2L_11833795_SNP [dm3] 2L_11833795_SNP [dm6]	T	G	4.422e^-5	0.957	UPSTREAM CG45011 & 1 other INTRON Pde1c
3L	7105603	3L_7105603_SNP [dm3] 3L_7112503_SNP [dm6]	A	G	4.491e^-5	0.957	INTRON form3
3L	7105606	3L_7105606_SNP [dm3] 3L_7112506_SNP [dm6]	G	T	4.491e^-5	0.957	INTRON form3
3L	7105607	3L_7105607_SNP [dm3] 3L_7112507_SNP [dm6]	G	T	4.491e^-5	0.957	INTRON form3
3L	7105609	3L_7105609_DEL [dm3] 3L_7112509_DEL [dm6]	GCACT	A	4.491e^-5	0.957	INTRON form3
3R	14403907	3R_14403907_SNP [dm3] 3R_18578185_SNP [dm6]	G	C	4.496e^-5	0.957	INTRON fray & 1 other
X	17654034	X_17654034_SNP [dm3] X_17760001_SNP [dm6]	A	C	4.559e^-5	0.957	INTERGENIC
2L	4179678	2L_4179678_SNP [dm3] 2L_4179678_SNP [dm6]	T	A	4.562e^-5	0.957	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	19386244	3L_19386244_SNP [dm3] 3L_19393144_SNP [dm6]	G	T	4.567e^-5	0.957	INTRON CG32206
3R	18163168	3R_18163168_SNP [dm3] 3R_22337446_SNP [dm6]	A	G	4.570e^-5	0.957	SYNONYMOUS_CODING CG5388
2R	3528133	2R_3528133_SNP [dm3] 2R_7640628_SNP [dm6]	T	A	4.600e^-5	0.957	INTRON CG43340	TF binding site mE1_TFBS_cad
3L	17238530	3L_17238530_SNP [dm3] 3L_17245430_SNP [dm6]	C	G	4.603e^-5	0.957	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
3L	17238199	3L_17238199_INS [dm3] 3L_17245099_INS [dm6]	A	AA	4.631e^-5	0.957	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
3L	7105615	3L_7105615_SNP [dm3] 3L_7112515_SNP [dm6]	A	G	4.758e^-5	0.957	INTRON form3
3R	26457392	3R_26457392_SNP [dm3] 3R_30631670_SNP [dm6]	C	A	4.759e^-5	0.957	INTERGENIC
2R	14151325	2R_14151325_SNP [dm3] 2R_18263820_SNP [dm6]	A	C	4.773e^-5	0.957	INTERGENIC
2R	12900312	2R_12900312_SNP [dm3] 2R_17012807_SNP [dm6]	T	A	4.796e^-5	0.957	INTRON Ehbp1
2R	3528129	2R_3528129_SNP [dm3] 2R_7640624_SNP [dm6]	T	C	4.832e^-5	0.957	SPLICE_SITE_REGION CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad
2L	12158791	2L_12158791_DEL [dm3] 2L_12158791_DEL [dm6]	AA	A	4.844e^-5	0.957	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8475796	X_8475796_SNP [dm3] X_8581763_SNP [dm6]	T	A	4.864e^-5	0.957	INTRON CG12065
2R	3316120	2R_3316120_SNP [dm3] 2R_7428615_SNP [dm6]	G	T	4.914e^-5	0.957	UPSTREAM CG11145 DOWNSTREAM CR44203 INTRON so	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3316132	2R_3316132_SNP [dm3] 2R_7428627_SNP [dm6]	T	G	4.922e^-5	0.957	UPSTREAM CG11145 DOWNSTREAM CR44203 INTRON so	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3528266	2R_3528266_SNP [dm3] 2R_7640761_SNP [dm6]	A	C	5.037e^-5	0.957	INTRON CG43340	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4691893	2L_4691893_SNP [dm3] 2L_4691893_SNP [dm6]	G	T	5.054e^-5	0.957	INTERGENIC
3L	535392	3L_535392_SNP [dm3] 3L_535392_SNP [dm6]	A	C	5.363e^-5	0.957	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10179840	3R_10179840_SNP [dm3] 3R_14354118_SNP [dm6]	T	C	5.391e^-5	0.957	INTRON NK7.1
3R	5044833	3R_5044833_SNP [dm3] 3R_9219111_SNP [dm6]	T	G	5.483e^-5	0.957	INTRON pum
3L	18017184	3L_18017184_SNP [dm3] 3L_18024084_SNP [dm6]	C	T	5.561e^-5	0.957	INTRON Eip75B
3L	8607211	3L_8607211_SNP [dm3] 3L_8614111_SNP [dm6]	T	C	5.641e^-5	0.957	INTRON CG6282
2L	17800654	2L_17800654_SNP [dm3] 2L_17800654_SNP [dm6]	A	T	5.650e^-5	0.957	INTRON CadN2
2R	13851476	2R_13851476_SNP [dm3] 2R_17963971_SNP [dm6]	C	T	5.678e^-5	0.957	INTERGENIC
3L	2619417	3L_2619417_SNP [dm3] 3L_2619417_SNP [dm6]	G	A	5.716e^-5	0.957	INTRON Pxn
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	5.765e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	4443340	X_4443340_SNP [dm3] X_4549307_SNP [dm6]	T	C	5.842e^-5	0.957	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	3523837	2R_3523837_SNP [dm3] 2R_7636332_SNP [dm6]	G	A	5.883e^-5	0.957	UPSTREAM CG43340 INTRON CG43340
3L	10319482	3L_10319482_SNP [dm3] 3L_10326382_SNP [dm6]	T	C	5.960e^-5	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	19388631	3R_19388631_SNP [dm3] 3R_23562909_SNP [dm6]	T	A	6.075e^-5	0.957	INTRON beat-IV	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19914375	3R_19914375_SNP [dm3] 3R_24088653_SNP [dm6]	C	A	6.119e^-5	0.957	INTRON 4EHP
X	16032294	X_16032294_SNP [dm3] X_16138261_SNP [dm6]	T	C	6.128e^-5	0.957	INTRON disco-r
3L	625608	3L_625608_SNP [dm3] 3L_625608_SNP [dm6]	T	A	6.206e^-5	0.957	INTERGENIC
3R	16026011	3R_16026011_SNP [dm3] 3R_20200289_SNP [dm6]	A	C	6.255e^-5	0.957	INTERGENIC
2L	10469138	2L_10469138_SNP [dm3] 2L_10469138_SNP [dm6]	T	C	6.380e^-5	0.957	INTRON RluA-1
3R	13713346	3R_13713346_SNP [dm3] 3R_17887624_SNP [dm6]	G	C	6.390e^-5	0.957	INTRON Rim
3L	2259297	3L_2259297_SNP [dm3] 3L_2259297_SNP [dm6]	G	C	6.477e^-5	0.957	UTR_3_PRIME oxt DOWNSTREAM CG2034	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4369662	2L_4369662_SNP [dm3] 2L_4369662_SNP [dm6]	G	T	6.490e^-5	0.957	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	3373484	X_3373484_SNP [dm3] X_3479451_SNP [dm6]	C	A	6.617e^-5	0.957	NON_SYNONYMOUS_CODING CG10804 INTRON CR44999	TF binding site mE1_TFBS_cad
3L	6999729	3L_6999729_SNP [dm3] 3L_7006629_SNP [dm6]	C	T	6.632e^-5	0.957	INTRON Mp
3R	8457126	3R_8457126_SNP [dm3] 3R_12631404_SNP [dm6]	G	A	6.649e^-5	0.957	NON_SYNONYMOUS_CODING Not10 DOWNSTREAM Snx3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4851963	2L_4851963_SNP [dm3] 2L_4851963_SNP [dm6]	G	A	6.666e^-5	0.957	SYNONYMOUS_CODING Mon1 UPSTREAM pog	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	2315205	3L_2315205_SNP [dm3] 3L_2315205_SNP [dm6]	T	G	6.682e^-5	0.957	INTERGENIC
X	8079313	X_8079313_SNP [dm3] X_8185280_SNP [dm6]	C	T	6.818e^-5	0.957	INTRON sdt
3R	14837710	3R_14837710_SNP [dm3] 3R_19011988_SNP [dm6]	G	A	6.874e^-5	0.957	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
3R	17401516	3R_17401516_SNP [dm3] 3R_21575794_SNP [dm6]	A	G	6.891e^-5	0.957	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad
2L	11225773	2L_11225773_SNP [dm3] 2L_11225773_SNP [dm6]	G	A	6.919e^-5	0.957	UTR_5_PRIME ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6994649	2R_6994649_INS [dm3] 2R_11107144_INS [dm6]	A	ACA	6.935e^-5	0.957	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	3954385	3R_3954385_INS [dm3] 3R_8128663_INS [dm6]	A	ATCTCACACAGAACAACTAT...	7.036e^-5	0.957	UTR_3_PRIME Gie
3R	27455754	3R_27455754_SNP [dm3] 3R_31630032_SNP [dm6]	A	G	7.052e^-5	0.957	INTRON kek6
3R	12453117	3R_12453117_SNP [dm3] 3R_16627395_SNP [dm6]	T	C	7.341e^-5	0.957	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4738547	2L_4738547_SNP [dm3] 2L_4738547_SNP [dm6]	T	G	7.382e^-5	0.957	INTRON CG15630	TF binding site mE1_TFBS_inv
3R	12453517	3R_12453517_SNP [dm3] 3R_16627795_SNP [dm6]	C	T	7.392e^-5	0.957	INTRON Fas1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15101131	3R_15101131_SNP [dm3] 3R_19275409_SNP [dm6]	T	C	7.578e^-5	0.957	INTERGENIC
2R	2131711	2R_2131711_SNP [dm3] 2R_6244206_SNP [dm6]	T	C	7.694e^-5	0.957	INTRON Pld	transposable element FlyBase
3L	8105182	3L_8105182_SNP [dm3] 3L_8112082_SNP [dm6]	T	A	7.848e^-5	0.957	DOWNSTREAM mir-2501 INTRON CG7927	TF binding site mE1_TFBS_sens
2R	19791580	2R_19791580_SNP [dm3] 2R_23904057_SNP [dm6]	T	C	8.021e^-5	0.957	SYNONYMOUS_CODING CG13562 DOWNSTREAM Lpt
X	15997475	X_15997475_SNP [dm3] X_16103442_SNP [dm6]	G	C	8.036e^-5	0.957	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15195895	2R_15195895_SNP [dm3] 2R_19308390_SNP [dm6]	G	A	8.121e^-5	0.957	SYNONYMOUS_CODING EndoB DOWNSTREAM CG7461
2L	13260509	2L_13260509_SNP [dm3] 2L_13260509_SNP [dm6]	T	A	8.162e^-5	0.957	UPSTREAM CG31730 & 1 other INTERGENIC
2R	16467558	2R_16467558_SNP [dm3] 2R_20580053_SNP [dm6]	T	C	8.236e^-5	0.957	INTRON qsm
2L	4640087	2L_4640087_SNP [dm3] 2L_4640087_SNP [dm6]	A	G	8.263e^-5	0.957	INTERGENIC
3R	19914317	3R_19914317_SNP [dm3] 3R_24088595_SNP [dm6]	T	C	8.350e^-5	0.957	INTRON 4EHP
3R	7131983	3R_7131983_DEL [dm3] 3R_11306261_DEL [dm6]	AA	A	8.388e^-5	0.957	UPSTREAM CR31386 INTERGENIC
3R	16994455	3R_16994455_SNP [dm3] 3R_21168733_SNP [dm6]	T	G	8.388e^-5	0.957	UPSTREAM Snmp1 INTRON SNF4Agamma
X	888170	X_888170_SNP [dm3] X_994137_SNP [dm6]	T	G	8.403e^-5	0.957	INTERGENIC
3R	25071072	3R_25071072_SNP [dm3] 3R_29245350_SNP [dm6]	G	A	8.468e^-5	0.957	UPSTREAM CG31445 INTRON SP1029	TF binding site mE1_TFBS_cad
2L	17953694	2L_17953694_SNP [dm3] 2L_17953694_SNP [dm6]	C	G	8.574e^-5	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	14700275	2R_14700275_SNP [dm3] 2R_18812770_SNP [dm6]	A	G	8.593e^-5	0.957	INTRON CG15096
2L	12158784	2L_12158784_SNP [dm3] 2L_12158784_SNP [dm6]	A	G	8.619e^-5	0.957	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16947428	2R_16947428_SNP [dm3] 2R_21059923_SNP [dm6]	T	C	8.669e^-5	0.957	SYNONYMOUS_CODING CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl
2L	13260566	2L_13260566_SNP [dm3] 2L_13260566_SNP [dm6]	C	T	8.692e^-5	0.957	UPSTREAM CG31730 & 1 other INTERGENIC
2R	11045466	2R_11045466_SNP [dm3] 2R_15157961_SNP [dm6]	C	A	8.728e^-5	0.957	INTRON igl
3L	8056809	3L_8056809_SNP [dm3] 3L_8063709_SNP [dm6]	C	T	8.781e^-5	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	3847147	3R_3847147_SNP [dm3] 3R_8021425_SNP [dm6]	A	G	8.829e^-5	0.957	SYNONYMOUS_CODING CG2747	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4057513	2R_4057513_SNP [dm3] 2R_8170008_SNP [dm6]	T	C	8.860e^-5	0.957	UTR_3_PRIME Gasz UPSTREAM Mlh1
3L	3832844	3L_3832844_DEL [dm3] 3L_3832844_DEL [dm6]	TTT	T	9.060e^-5	0.957	INTRON enc
2L	15375982	2L_15375982_SNP [dm3] 2L_15375982_SNP [dm6]	G	C	9.119e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3528165	2R_3528165_INS [dm3] 2R_7640660_INS [dm6]	T	TCTCAT	9.147e^-5	0.957	INTRON CG43340	TF binding site mE1_TFBS_cad
3L	6797159	3L_6797159_SNP [dm3] 3L_6804059_SNP [dm6]	C	G	9.412e^-5	0.957	INTERGENIC
2L	3517826	2L_3517826_SNP [dm3] 2L_3517826_SNP [dm6]	C	T	9.467e^-5	0.957	SYNONYMOUS_CODING CG3213 DOWNSTREAM CG17593	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15855575	X_15855575_SNP [dm3] X_15961542_SNP [dm6]	T	A	9.602e^-5	0.957	INTRON mmd
2L	8355200	2L_8355200_SNP [dm3] 2L_8355200_SNP [dm6]	T	C	9.609e^-5	0.957	DOWNSTREAM CG7627 & 1 other INTERGENIC
2L	13260508	2L_13260508_SNP [dm3] 2L_13260508_SNP [dm6]	A	T	9.721e^-5	0.957	UPSTREAM CG31730 & 1 other INTERGENIC
2L	13425332	2L_13425332_SNP [dm3] 2L_13425332_SNP [dm6]	C	A	9.784e^-5	0.957	INTRON CG42784
3L	7105617	3L_7105617_SNP [dm3] 3L_7112517_SNP [dm6]	C	A	9.800e^-5	0.957	INTRON form3
X	1169209	X_1169209_SNP [dm3] X_1275176_SNP [dm6]	T	C	9.994e^-5	0.957	UTR_5_PRIME Atf3	TF binding site BDTNP1_TFBS_dl
3L	17238557	3L_17238557_SNP [dm3] 3L_17245457_SNP [dm6]	C	T	1.005e^-4	0.957	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
3L	7625378	3L_7625378_SNP [dm3] 3L_7632278_SNP [dm6]	C	T	1.007e^-4	0.957	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12485628	2R_12485628_SNP [dm3] 2R_16598123_SNP [dm6]	T	C	1.018e^-4	0.957	SYNONYMOUS_CODING CG8303 UPSTREAM CG5089
2R	10962653	2R_10962653_SNP [dm3] 2R_15075148_SNP [dm6]	T	A	1.023e^-4	0.957	INTERGENIC
2R	10962635	2R_10962635_SNP [dm3] 2R_15075130_SNP [dm6]	A	C	1.033e^-4	0.957	INTERGENIC
2R	21104569	2R_21104569_SNP [dm3] 2R_25217046_SNP [dm6]	T	C	1.034e^-4	0.957	INTRON CG9380	regulatory region FlyBase TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10528222	2L_10528222_SNP [dm3] 2L_10528222_SNP [dm6]	A	C	1.042e^-4	0.957	UPSTREAM Lip4 INTRON Lip4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5605553	3L_5605553_SNP [dm3] 3L_5612453_SNP [dm6]	T	A	1.042e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10288467	2L_10288467_SNP [dm3] 2L_10288467_SNP [dm6]	A	G	1.045e^-4	0.957	SYNONYMOUS_CODING CG5604
X	15324411	X_15324411_SNP [dm3] X_15430378_SNP [dm6]	C	T	1.047e^-4	0.957	INTRON Cngl
3L	8056590	3L_8056590_SNP [dm3] 3L_8063490_SNP [dm6]	C	G	1.048e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1303587	2L_1303587_SNP [dm3] 2L_1303587_SNP [dm6]	G	A	1.057e^-4	0.957	INTERGENIC
3R	25616118	3R_25616118_SNP [dm3] 3R_29790396_SNP [dm6]	C	A	1.074e^-4	0.957	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
2R	12085907	2R_12085907_SNP [dm3] 2R_16198402_SNP [dm6]	A	G	1.076e^-4	0.957	INTRON CG42837 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17202849	3R_17202849_SNP [dm3] 3R_21377127_SNP [dm6]	T	C	1.076e^-4	0.957	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7105687	3L_7105687_SNP [dm3] 3L_7112587_SNP [dm6]	T	A	1.078e^-4	0.957	INTRON form3
3R	17323235	3R_17323235_SNP [dm3] 3R_21497513_SNP [dm6]	A	C	1.081e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9148750	3L_9148750_SNP [dm3] 3L_9155650_SNP [dm6]	T	C	1.091e^-4	0.957	INTRON Rdl	TF binding site mE1_TFBS_HSA
3L	10319465	3L_10319465_SNP [dm3] 3L_10326365_SNP [dm6]	T	C	1.094e^-4	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
2L	7968284	2L_7968284_SNP [dm3] 2L_7968284_SNP [dm6]	A	T	1.107e^-4	0.957	INTRON Snoo
3L	8056860	3L_8056860_SNP [dm3] 3L_8063760_SNP [dm6]	A	G	1.107e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13260600	2L_13260600_DEL [dm3] 2L_13260600_DEL [dm6]	ATCT	A	1.110e^-4	0.957	UPSTREAM CG31730 & 1 other INTERGENIC
3L	15139292	3L_15139292_SNP [dm3] 3L_15146192_SNP [dm6]	G	A	1.112e^-4	0.957	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	10319382	3L_10319382_SNP [dm3] 3L_10326282_SNP [dm6]	A	T	1.114e^-4	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	4266100	3R_4266100_SNP [dm3] 3R_8440378_SNP [dm6]	C	A	1.115e^-4	0.957	INTRON CG45263
3L	22838480	3L_22838480_SNP [dm3] 3L_22845380_SNP [dm6]	G	T	1.119e^-4	0.957	INTERGENIC
3L	4979145	3L_4979145_SNP [dm3] 3L_4979145_SNP [dm6]	T	A	1.129e^-4	0.957	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6943868	3L_6943868_SNP [dm3] 3L_6950768_SNP [dm6]	C	T	1.135e^-4	0.957	SYNONYMOUS_CODING CG10077	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	8079314	X_8079314_DEL [dm3] X_8185281_DEL [dm6]	TAC	T	1.135e^-4	0.957	INTRON sdt
X	4957256	X_4957256_INS [dm3] X_5063223_INS [dm6]	C	CC	1.143e^-4	0.957	UPSTREAM ovo INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12781289	2R_12781289_SNP [dm3] 2R_16893784_SNP [dm6]	T	C	1.152e^-4	0.957	INTRON CG8910
X	21210769	X_21210769_INS [dm3] X_21339742_INS [dm6]	A	AGAAGTAA	1.162e^-4	0.957	UTR_5_PRIME fliI UPSTREAM tty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2763328	3L_2763328_SNP [dm3] 3L_2763328_SNP [dm6]	A	G	1.169e^-4	0.957	INTRON Mrtf
3L	15139295	3L_15139295_SNP [dm3] 3L_15146195_SNP [dm6]	T	A	1.169e^-4	0.957	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3L	8056583	3L_8056583_SNP [dm3] 3L_8063483_SNP [dm6]	T	A	1.170e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	9655520	X_9655520_SNP [dm3] X_9761487_SNP [dm6]	A	G	1.176e^-4	0.957	INTERGENIC
2L	910711	2L_910711_SNP [dm3] 2L_910711_SNP [dm6]	C	G	1.182e^-4	0.957	INTERGENIC
3R	11281490	3R_11281490_SNP [dm3] 3R_15455768_SNP [dm6]	G	A	1.200e^-4	0.957	INTRON AdamTS-A
3R	11281500	3R_11281500_SNP [dm3] 3R_15455778_SNP [dm6]	T	G	1.200e^-4	0.957	INTRON AdamTS-A
3L	15139262	3L_15139262_SNP [dm3] 3L_15146162_SNP [dm6]	A	C	1.210e^-4	0.957	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
2L	16444912	2L_16444912_DEL [dm3] 2L_16444912_DEL [dm6]	ATGAATATA	A	1.211e^-4	0.957	UPSTREAM Idgf1 INTRON CG5888	TF binding site BDTNP1_TFBS_da
3R	16717030	3R_16717030_SNP [dm3] 3R_20891308_SNP [dm6]	T	A	1.215e^-4	0.957	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	7748391	3L_7748391_SNP [dm3] 3L_7755291_SNP [dm6]	T	G	1.232e^-4	0.957	DOWNSTREAM CG7409 INTRON CG32373
X	1344930	X_1344930_SNP [dm3] X_1450897_SNP [dm6]	T	C	1.234e^-4	0.957	UTR_3_PRIME futsch
3R	9348296	3R_9348296_SNP [dm3] 3R_13522574_SNP [dm6]	T	A	1.240e^-4	0.957	DOWNSTREAM CG12538 INTERGENIC
3R	16239336	3R_16239336_SNP [dm3] 3R_20413614_SNP [dm6]	A	G	1.248e^-4	0.957	INTRON Gfrl
3L	8056742	3L_8056742_SNP [dm3] 3L_8063642_SNP [dm6]	T	A	1.266e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	19386248	3L_19386248_SNP [dm3] 3L_19393148_SNP [dm6]	A	T	1.267e^-4	0.957	INTRON CG32206
2L	4317472	2L_4317472_SNP [dm3] 2L_4317472_SNP [dm6]	A	T	1.275e^-4	0.957	INTRON tutl	TF binding site mE1_TFBS_HSA
2R	18610226	2R_18610226_SNP [dm3] 2R_22722721_SNP [dm6]	A	G	1.280e^-4	0.957	UTR_3_PRIME jbug INTRON jbug
2L	12035520	2L_12035520_SNP [dm3] 2L_12035520_SNP [dm6]	T	C	1.283e^-4	0.957	SYNONYMOUS_CODING CG18788 DOWNSTREAM Tom70
X	6440749	X_6440749_SNP [dm3] X_6546716_SNP [dm6]	A	T	1.295e^-4	0.957	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6440764	X_6440764_INS [dm3] X_6546731_INS [dm6]	G	ATAGGTTTTAGTCAACT...	1.295e^-4	0.957	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16816073	3R_16816073_SNP [dm3] 3R_20990351_SNP [dm6]	G	A	1.296e^-4	0.957	INTRON Calx
2R	7437642	2R_7437642_SNP [dm3] 2R_11550137_SNP [dm6]	A	G	1.297e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	16994468	3R_16994468_SNP [dm3] 3R_21168746_SNP [dm6]	G	T	1.305e^-4	0.957	UPSTREAM Snmp1 INTRON SNF4Agamma
2L	15001807	2L_15001807_SNP [dm3] 2L_15001807_SNP [dm6]	A	T	1.314e^-4	0.957	INTERGENIC
3L	14643915	3L_14643915_SNP [dm3] 3L_14650815_SNP [dm6]	A	G	1.316e^-4	0.957	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
2L	7415420	2L_7415420_SNP [dm3] 2L_7415420_SNP [dm6]	A	T	1.325e^-4	0.957	INTRON chm
3R	15850257	3R_15850257_SNP [dm3] 3R_20024535_SNP [dm6]	T	C	1.328e^-4	0.957	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
X	8208418	X_8208418_DEL [dm3] X_8314385_DEL [dm6]	GGG	G	1.331e^-4	0.957	INTRON nAChRalpha3
3R	7077165	3R_7077165_SNP [dm3] 3R_11251443_SNP [dm6]	C	A	1.333e^-4	0.957	INTRON CR43283 EXON CR43283
X	8367460	X_8367460_SNP [dm3] X_8473427_SNP [dm6]	G	A	1.340e^-4	0.957	UPSTREAM Cp7Fb DOWNSTREAM Cp7Fa INTRON CG33223
2R	15935444	2R_15935444_SNP [dm3] 2R_20047939_SNP [dm6]	T	G	1.341e^-4	0.957	INTERGENIC
3R	18159298	3R_18159298_SNP [dm3] 3R_22333576_SNP [dm6]	G	A	1.343e^-4	0.957	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG5388
3R	7990303	3R_7990303_SNP [dm3] 3R_12164581_SNP [dm6]	C	T	1.348e^-4	0.957	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16925032	2R_16925032_SNP [dm3] 2R_21037527_SNP [dm6]	T	C	1.349e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2912185	3L_2912185_SNP [dm3] 3L_2912185_SNP [dm6]	C	A	1.349e^-4	0.957	INTRON Shab
X	4252634	X_4252634_SNP [dm3] X_4358601_SNP [dm6]	T	C	1.358e^-4	0.957	SYNONYMOUS_CODING norpA
2L	3455948	2L_3455948_SNP [dm3] 2L_3455948_SNP [dm6]	T	C	1.358e^-4	0.957	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16533024	2R_16533024_SNP [dm3] 2R_20645519_SNP [dm6]	A	G	1.363e^-4	0.957	SYNONYMOUS_CODING DMAP1 UPSTREAM Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4070765	2R_4070765_SNP [dm3] 2R_8183260_SNP [dm6]	C	G	1.364e^-4	0.957	INTRON LRP1
3L	2259842	3L_2259842_SNP [dm3] 3L_2259842_SNP [dm6]	G	T	1.365e^-4	0.957	SYNONYMOUS_CODING oxt DOWNSTREAM CG2034	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15006022	3L_15006022_DEL [dm3] 3L_15012922_DEL [dm6]	GGGTAGCCG	G	1.371e^-4	0.957	INTRON Reck
2L	11251347	2L_11251347_SNP [dm3] 2L_11251347_SNP [dm6]	A	C	1.372e^-4	0.957	INTRON ab	TF binding site BDTNP1_TFBS_twi
X	8079294	X_8079294_SNP [dm3] X_8185261_SNP [dm6]	A	C	1.383e^-4	0.957	INTRON sdt
3R	27454866	3R_27454866_SNP [dm3] 3R_31629144_SNP [dm6]	T	A	1.388e^-4	0.957	INTRON kek6
3L	2259631	3L_2259631_SNP [dm3] 3L_2259631_SNP [dm6]	C	A	1.398e^-4	0.957	NON_SYNONYMOUS_CODING oxt DOWNSTREAM CG2034	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2259806	3L_2259806_SNP [dm3] 3L_2259806_SNP [dm6]	A	G	1.398e^-4	0.957	SYNONYMOUS_CODING oxt DOWNSTREAM CG2034	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2259878	3L_2259878_SNP [dm3] 3L_2259878_SNP [dm6]	C	G	1.398e^-4	0.957	SYNONYMOUS_CODING oxt DOWNSTREAM CG2034	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10685876	2R_10685876_SNP [dm3] 2R_14798371_SNP [dm6]	G	A	1.411e^-4	0.957	SYNONYMOUS_CODING kn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	14403235	3R_14403235_SNP [dm3] 3R_18577513_SNP [dm6]	T	C	1.419e^-4	0.957	INTRON CG7694 & 1 other
3L	14643943	3L_14643943_SNP [dm3] 3L_14650843_SNP [dm6]	C	G	1.430e^-4	0.957	INTRON dlp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	8056688	3L_8056688_INS [dm3] 3L_8063588_INS [dm6]	T	TT	1.450e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056736	3L_8056736_SNP [dm3] 3L_8063636_SNP [dm6]	T	G	1.450e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056737	3L_8056737_INS [dm3] 3L_8063637_INS [dm6]	T	TTTG	1.450e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056752	3L_8056752_SNP [dm3] 3L_8063652_SNP [dm6]	T	A	1.450e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056764	3L_8056764_MNP [dm3] 3L_8063664_MNP [dm6]	TATT	GTGC	1.450e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056771	3L_8056771_INS [dm3] 3L_8063671_INS [dm6]	G	GG	1.450e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056799	3L_8056799_DEL [dm3] 3L_8063699_DEL [dm6]	TT	T	1.450e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9628802	3L_9628802_SNP [dm3] 3L_9635702_SNP [dm6]	C	T	1.452e^-4	0.957	SYNONYMOUS_CODING fry
2R	4066791	2R_4066791_SNP [dm3] 2R_8179286_SNP [dm6]	G	T	1.453e^-4	0.957	INTRON LRP1
3L	6961544	3L_6961544_SNP [dm3] 3L_6968444_SNP [dm6]	C	A	1.459e^-4	0.957	UPSTREAM CG10064 INTRON Mis12
3R	27456495	3R_27456495_SNP [dm3] 3R_31630773_SNP [dm6]	G	A	1.460e^-4	0.957	INTRON kek6
3L	5537774	3L_5537774_SNP [dm3] 3L_5544674_SNP [dm6]	T	G	1.462e^-4	0.957	DOWNSTREAM CG10625 INTRON CG10625
X	18348134	X_18348134_INS [dm3] X_18454101_INS [dm6]	A	AA	1.473e^-4	0.957	INTRON CG32547
3L	15139298	3L_15139298_SNP [dm3] 3L_15146198_SNP [dm6]	T	C	1.482e^-4	0.957	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3
3R	15756347	3R_15756347_SNP [dm3] 3R_19930625_SNP [dm6]	C	T	1.491e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15048764	2R_15048764_SNP [dm3] 2R_19161259_SNP [dm6]	A	G	1.492e^-4	0.957	SYNONYMOUS_CODING ena
2R	4066835	2R_4066835_INS [dm3] 2R_8179330_INS [dm6]	A	AA	1.492e^-4	0.957	INTRON LRP1
3R	5846787	3R_5846787_SNP [dm3] 3R_10021065_SNP [dm6]	C	T	1.502e^-4	0.957	SYNONYMOUS_CODING Mical	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8355181	2L_8355181_SNP [dm3] 2L_8355181_SNP [dm6]	T	C	1.502e^-4	0.957	DOWNSTREAM CG7627 & 1 other INTERGENIC
2L	12035535	2L_12035535_SNP [dm3] 2L_12035535_SNP [dm6]	C	T	1.507e^-4	0.957	SYNONYMOUS_CODING CG18788 DOWNSTREAM Tom70
2L	8148642	2L_8148642_SNP [dm3] 2L_8148642_SNP [dm6]	T	A	1.516e^-4	0.957	UPSTREAM CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16444910	2L_16444910_SNP [dm3] 2L_16444910_SNP [dm6]	A	T	1.520e^-4	0.957	UPSTREAM Idgf1 INTRON CG5888	TF binding site BDTNP1_TFBS_da
3L	8056641	3L_8056641_INS [dm3] 3L_8063541_INS [dm6]	A	AT	1.530e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	4075731	2R_4075731_SNP [dm3] 2R_8188226_SNP [dm6]	G	A	1.530e^-4	0.957	INTRON LRP1
2L	17800756	2L_17800756_SNP [dm3] 2L_17800756_SNP [dm6]	A	T	1.533e^-4	0.957	INTRON CadN2
3R	18690766	3R_18690766_SNP [dm3] 3R_22865044_SNP [dm6]	T	G	1.541e^-4	0.957	INTERGENIC
3R	15756493	3R_15756493_INS [dm3] 3R_19930771_INS [dm6]	A	AA	1.553e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2315198	3L_2315198_SNP [dm3] 3L_2315198_SNP [dm6]	G	A	1.556e^-4	0.957	INTERGENIC
2R	7022426	2R_7022426_SNP [dm3] 2R_11134921_SNP [dm6]	C	G	1.557e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	5776917	3L_5776917_SNP [dm3] 3L_5783817_SNP [dm6]	A	G	1.558e^-4	0.957	SYNONYMOUS_CODING Cralbp UTR_3_PRIME Pmi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21006834	X_21006834_SNP [dm3] X_21135807_SNP [dm6]	T	C	1.564e^-4	0.957	SYNONYMOUS_CODING CG34120
3L	1290006	3L_1290006_SNP [dm3] 3L_1290006_SNP [dm6]	G	A	1.567e^-4	0.957	NON_SYNONYMOUS_CODING CG32333 INTRON CG32333
3R	23774307	3R_23774307_SNP [dm3] 3R_27948585_SNP [dm6]	T	C	1.567e^-4	0.957	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4062051	2R_4062051_SNP [dm3] 2R_8174546_SNP [dm6]	A	C	1.572e^-4	0.957	UTR_5_PRIME LRP1 UPSTREAM CG14757	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14537607	2L_14537607_SNP [dm3] 2L_14537607_SNP [dm6]	C	T	1.585e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_Ubx
X	13473665	X_13473665_SNP [dm3] X_13579632_SNP [dm6]	A	T	1.589e^-4	0.957	INTRON Tango13
2R	4046113	2R_4046113_SNP [dm3] 2R_8158608_SNP [dm6]	G	A	1.599e^-4	0.957	UPSTREAM CR30374 DOWNSTREAM CR44068 & 2 others INTERGENIC
3L	6089317	3L_6089317_SNP [dm3] 3L_6096217_SNP [dm6]	G	A	1.601e^-4	0.957	SYNONYMOUS_CODING loj
3R	27456504	3R_27456504_SNP [dm3] 3R_31630782_SNP [dm6]	A	G	1.613e^-4	0.957	INTRON kek6
3R	16957416	3R_16957416_SNP [dm3] 3R_21131694_SNP [dm6]	C	G	1.617e^-4	0.957	SYNONYMOUS_CODING Ice2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3884479	2L_3884479_SNP [dm3] 2L_3884479_SNP [dm6]	G	C	1.620e^-4	0.957	NON_SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17223883	3R_17223883_SNP [dm3] 3R_21398161_SNP [dm6]	T	G	1.621e^-4	0.957	NON_SYNONYMOUS_CODING CG6475
3R	24832744	3R_24832744_SNP [dm3] 3R_29007022_SNP [dm6]	A	G	1.624e^-4	0.957	INTRON wat
3L	4296760	3L_4296760_SNP [dm3] 3L_4296760_SNP [dm6]	T	C	1.631e^-4	0.957	INTRON dyl
X	6440775	X_6440775_SNP [dm3] X_6546742_SNP [dm6]	C	T	1.635e^-4	0.957	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4765550	3R_4765550_SNP [dm3] 3R_8939828_SNP [dm6]	G	T	1.641e^-4	0.957	INTRON skap
X	14347392	X_14347392_SNP [dm3] X_14453359_SNP [dm6]	C	T	1.642e^-4	0.957	INTRON dpr8
3L	13322647	3L_13322647_INS [dm3] 3L_13329547_INS [dm6]	T	TT	1.642e^-4	0.957	UTR_3_PRIME CG14113
3R	16307980	3R_16307980_DEL [dm3] 3R_20482258_DEL [dm6]	GCCCAATTC	G	1.645e^-4	0.957	INTRON Gfrl
3R	16818234	3R_16818234_SNP [dm3] 3R_20992512_SNP [dm6]	C	A	1.648e^-4	0.957	UTR_5_PRIME Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7437631	2R_7437631_INS [dm3] 2R_11550126_INS [dm6]	G	GA	1.659e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	7609504	2L_7609504_SNP [dm3] 2L_7609504_SNP [dm6]	C	G	1.666e^-4	0.957	INTRON CG6739
2R	19949597	2R_19949597_SNP [dm3] 2R_24062074_SNP [dm6]	T	G	1.669e^-4	0.957	UPSTREAM Rap2l DOWNSTREAM RpL12 INTRON RpL39	TF binding site BDTNP1_TFBS_dl
X	3475125	X_3475125_SNP [dm3] X_3581092_SNP [dm6]	G	A	1.669e^-4	0.957	INTRON AstA-R1
3R	24223995	3R_24223995_SNP [dm3] 3R_28398273_SNP [dm6]	T	G	1.674e^-4	0.957	INTERGENIC
3R	16239453	3R_16239453_SNP [dm3] 3R_20413731_SNP [dm6]	T	G	1.675e^-4	0.957	INTRON Gfrl
3R	15756405	3R_15756405_SNP [dm3] 3R_19930683_SNP [dm6]	C	G	1.678e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17399753	X_17399753_SNP [dm3] X_17505720_SNP [dm6]	A	T	1.684e^-4	0.957	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	6185262	X_6185262_SNP [dm3] X_6291229_SNP [dm6]	A	T	1.685e^-4	0.957	UTR_5_PRIME Rpt4 UPSTREAM CG15896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5123881	3R_5123881_SNP [dm3] 3R_9298159_SNP [dm6]	C	T	1.692e^-4	0.957	INTRON CG8861
2R	3515500	2R_3515500_INS [dm3] 2R_7627995_INS [dm6]	T	TT	1.702e^-4	0.957	UPSTREAM CG43340 INTRON CG43340
3R	15756441	3R_15756441_SNP [dm3] 3R_19930719_SNP [dm6]	A	G	1.713e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	15756409	3R_15756409_SNP [dm3] 3R_19930687_SNP [dm6]	T	G	1.714e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11613422	2L_11613422_SNP [dm3] 2L_11613422_SNP [dm6]	A	T	1.721e^-4	0.957	INTRON kek2
3L	3606638	3L_3606638_SNP [dm3] 3L_3606638_SNP [dm6]	G	T	1.737e^-4	0.957	INTRON Eip63E
3R	15756618	3R_15756618_SNP [dm3] 3R_19930896_SNP [dm6]	A	G	1.740e^-4	0.957	DOWNSTREAM mira INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	21126580	2R_21126580_SNP [dm3] 2R_25239057_SNP [dm6]	G	A	1.750e^-4	0.957	INTRON CG9380
3L	8056727	3L_8056727_MNP [dm3] 3L_8063627_MNP [dm6]	GTT	CCA	1.775e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056733	3L_8056733_SNP [dm3] 3L_8063633_SNP [dm6]	T	G	1.775e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	535388	3L_535388_SNP [dm3] 3L_535388_SNP [dm6]	C	T	1.779e^-4	0.957	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5677243	2L_5677243_SNP [dm3] 2L_5677243_SNP [dm6]	A	G	1.786e^-4	0.957	INTERGENIC
3L	23054413	3L_23054413_SNP [dm3] 3L_23061313_SNP [dm6]	T	G	1.792e^-4	0.957	INTERGENIC
2R	13219392	2R_13219392_SNP [dm3] 2R_17331887_SNP [dm6]	A	T	1.798e^-4	0.957	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2L	17800759	2L_17800759_SNP [dm3] 2L_17800759_SNP [dm6]	A	G	1.798e^-4	0.957	INTRON CadN2
2R	9574088	2R_9574088_DEL [dm3] 2R_13686583_DEL [dm6]	TAACTTTAGATT...	T	1.809e^-4	0.957	INTRON fas
3L	8056625	3L_8056625_SNP [dm3] 3L_8063525_SNP [dm6]	G	A	1.812e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	6267352	3R_6267352_SNP [dm3] 3R_10441630_SNP [dm6]	A	C	1.817e^-4	0.957	INTERGENIC
X	815927	X_815927_SNP [dm3] X_921894_SNP [dm6]	G	A	1.818e^-4	0.957	DOWNSTREAM CG3711 INTRON CG43867
3R	10694463	3R_10694463_SNP [dm3] 3R_14868741_SNP [dm6]	T	C	1.819e^-4	0.957	INTRON btsz
2L	1604790	2L_1604790_SNP [dm3] 2L_1604790_SNP [dm6]	T	A	1.819e^-4	0.957	SYNONYMOUS_CODING haf INTRON CG31935
3L	15139351	3L_15139351_SNP [dm3] 3L_15146251_SNP [dm6]	T	A	1.824e^-4	0.957	UTR_3_PRIME Pex3 UPSTREAM FucTA DOWNSTREAM Pex3	TF binding site BDTNP1_TFBS_dl
2L	4179528	2L_4179528_SNP [dm3] 2L_4179528_SNP [dm6]	A	G	1.826e^-4	0.957	INTERGENIC
3R	16754035	3R_16754035_SNP [dm3] 3R_20928313_SNP [dm6]	A	T	1.826e^-4	0.957	UTR_3_PRIME hdly DOWNSTREAM hdly INTRON CG31191 & 1 other
3R	12453884	3R_12453884_SNP [dm3] 3R_16628162_SNP [dm6]	T	A	1.829e^-4	0.957	INTRON Fas1
3R	17947165	3R_17947165_SNP [dm3] 3R_22121443_SNP [dm6]	T	C	1.836e^-4	0.957	INTRON CG42390
3R	17947167	3R_17947167_INS [dm3] 3R_22121445_INS [dm6]	T	TT	1.836e^-4	0.957	INTRON CG42390
2L	12237865	2L_12237865_SNP [dm3] 2L_12237865_SNP [dm6]	G	A	1.840e^-4	0.957	INTRON aret
3R	12443088	3R_12443088_SNP [dm3] 3R_16617366_SNP [dm6]	C	T	1.844e^-4	0.957	UPSTREAM CG17560 DOWNSTREAM CG17562 INTERGENIC
X	15379814	X_15379814_SNP [dm3] X_15485781_SNP [dm6]	A	G	1.858e^-4	0.957	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16754058	3R_16754058_SNP [dm3] 3R_20928336_SNP [dm6]	T	A	1.864e^-4	0.957	UTR_3_PRIME hdly DOWNSTREAM hdly INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
X	11362243	X_11362243_SNP [dm3] X_11468210_SNP [dm6]	G	T	1.867e^-4	0.957	INTRON CG43155
2R	15695982	2R_15695982_SNP [dm3] 2R_19808477_SNP [dm6]	C	A	1.873e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15698662	2R_15698662_SNP [dm3] 2R_19811157_SNP [dm6]	C	T	1.873e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	3728049	2R_3728049_SNP [dm3] 2R_7840544_SNP [dm6]	T	A	1.884e^-4	0.957	INTRON Dgk
X	12315302	X_12315302_SNP [dm3] X_12421269_SNP [dm6]	T	C	1.887e^-4	0.957	INTERGENIC
2R	16696827	2R_16696827_SNP [dm3] 2R_20809322_SNP [dm6]	C	T	1.889e^-4	0.957	INTERGENIC
3R	16239364	3R_16239364_SNP [dm3] 3R_20413642_SNP [dm6]	A	T	1.892e^-4	0.957	INTRON Gfrl
X	745055	X_745055_SNP [dm3] X_851022_SNP [dm6]	G	C	1.894e^-4	0.957	INTRON CG43867
3L	981219	3L_981219_SNP [dm3] 3L_981219_SNP [dm6]	G	T	1.898e^-4	0.957	DOWNSTREAM Glut1 INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10575002	2L_10575002_SNP [dm3] 2L_10575002_SNP [dm6]	A	G	1.901e^-4	0.957	DOWNSTREAM w-cup INTRON Trim9
X	20942915	X_20942915_SNP [dm3] X_21071888_SNP [dm6]	A	T	1.906e^-4	0.957	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	814182	X_814182_SNP [dm3] X_920149_SNP [dm6]	C	A	1.908e^-4	0.957	INTRON CG43867
3L	2764254	3L_2764254_SNP [dm3] 3L_2764254_SNP [dm6]	T	A	1.911e^-4	0.957	INTRON Mrtf
3R	9733229	3R_9733229_SNP [dm3] 3R_13907507_SNP [dm6]	A	C	1.911e^-4	0.957	INTERGENIC
3R	3141889	3R_3141889_SNP [dm3] 3R_7316167_SNP [dm6]	G	C	1.915e^-4	0.957	NON_SYNONYMOUS_CODING CG10029
2L	13294440	2L_13294440_SNP [dm3] 2L_13294440_SNP [dm6]	A	G	1.919e^-4	0.957	INTRON CG31729	TF binding site BDTNP1_TFBS_twi
3R	15756367	3R_15756367_SNP [dm3] 3R_19930645_SNP [dm6]	A	T	1.930e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18159163	3R_18159163_SNP [dm3] 3R_22333441_SNP [dm6]	A	G	1.933e^-4	0.957	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
3R	22129184	3R_22129184_SNP [dm3] 3R_26303462_SNP [dm6]	A	G	1.938e^-4	0.957	INTERGENIC
2R	10587496	2R_10587496_SNP [dm3] 2R_14699991_SNP [dm6]	T	C	1.941e^-4	0.957	INTRON mspo
2R	2131948	2R_2131948_SNP [dm3] 2R_6244443_SNP [dm6]	G	A	1.958e^-4	0.957	INTRON Pld
2R	18610222	2R_18610222_SNP [dm3] 2R_22722717_SNP [dm6]	T	A	1.965e^-4	0.957	UTR_3_PRIME jbug INTRON jbug
2L	6875384	2L_6875384_SNP [dm3] 2L_6875384_SNP [dm6]	C	G	1.966e^-4	0.957	UTR_5_PRIME Nlg2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13712811	X_13712811_SNP [dm3] X_13818778_SNP [dm6]	A	G	1.974e^-4	0.957	INTRON Clic
3R	11281434	3R_11281434_INS [dm3] 3R_15455712_INS [dm6]	C	CCGAGTC	1.993e^-4	0.957	INTRON AdamTS-A
2L	4818911	2L_4818911_SNP [dm3] 2L_4818911_SNP [dm6]	C	G	1.997e^-4	0.957	UPSTREAM CG3225 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16950841	3R_16950841_SNP [dm3] 3R_21125119_SNP [dm6]	C	G	1.998e^-4	0.957	INTRON slmb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24101733	3R_24101733_SNP [dm3] 3R_28276011_SNP [dm6]	G	C	1.998e^-4	0.957	INTERGENIC
3L	7635051	3L_7635051_SNP [dm3] 3L_7641951_SNP [dm6]	C	T	2.000e^-4	0.957	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	16004106	X_16004106_SNP [dm3] X_16110073_SNP [dm6]	A	G	2.007e^-4	0.957	INTERGENIC
3L	4296763	3L_4296763_SNP [dm3] 3L_4296763_SNP [dm6]	A	G	2.020e^-4	0.957	INTRON dyl
2R	19949603	2R_19949603_SNP [dm3] 2R_24062080_SNP [dm6]	T	C	2.026e^-4	0.957	UPSTREAM Rap2l DOWNSTREAM RpL12 INTRON RpL39	TF binding site BDTNP1_TFBS_dl
2R	12551602	2R_12551602_SNP [dm3] 2R_16664097_SNP [dm6]	T	C	2.032e^-4	0.957	UTR_5_PRIME Picot UPSTREAM Picot
2L	10900647	2L_10900647_SNP [dm3] 2L_10900647_SNP [dm6]	G	C	2.033e^-4	0.957	UTR_3_PRIME CG14070 DOWNSTREAM CG14070
2L	14537601	2L_14537601_SNP [dm3] 2L_14537601_SNP [dm6]	G	C	2.037e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	7105602	3L_7105602_SNP [dm3] 3L_7112502_SNP [dm6]	A	T	2.049e^-4	0.957	INTRON form3
3R	7743994	3R_7743994_SNP [dm3] 3R_11918272_SNP [dm6]	G	C	2.074e^-4	0.957	INTRON Cad87A
2R	18610202	2R_18610202_SNP [dm3] 2R_22722697_SNP [dm6]	C	T	2.074e^-4	0.957	UTR_3_PRIME jbug INTRON jbug
2L	10021097	2L_10021097_SNP [dm3] 2L_10021097_SNP [dm6]	C	T	2.080e^-4	0.957	INTERGENIC
3L	8056606	3L_8056606_INS [dm3] 3L_8063506_INS [dm6]	T	TTT	2.095e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8056611	3L_8056611_MNP [dm3] 3L_8063511_MNP [dm6]	TAC	ATA	2.095e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8056629	3L_8056629_SNP [dm3] 3L_8063529_SNP [dm6]	C	T	2.095e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8056820	3L_8056820_SNP [dm3] 3L_8063720_SNP [dm6]	G	A	2.095e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056825	3L_8056825_SNP [dm3] 3L_8063725_SNP [dm6]	A	T	2.095e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8056827	3L_8056827_DEL [dm3] 3L_8063727_DEL [dm6]	TT	T	2.095e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12411133	2R_12411133_SNP [dm3] 2R_16523628_SNP [dm6]	C	A	2.095e^-4	0.957	INTRON Sema-2a
2R	12573968	2R_12573968_SNP [dm3] 2R_16686463_SNP [dm6]	T	G	2.098e^-4	0.957	INTRON CG30463
2L	2862498	2L_2862498_SNP [dm3] 2L_2862498_SNP [dm6]	T	C	2.110e^-4	0.957	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4640067	2L_4640067_SNP [dm3] 2L_4640067_SNP [dm6]	G	T	2.111e^-4	0.957	INTERGENIC
3L	3575186	3L_3575186_SNP [dm3] 3L_3575186_SNP [dm6]	G	A	2.117e^-4	0.957	INTRON Eip63E
3R	8595947	3R_8595947_SNP [dm3] 3R_12770225_SNP [dm6]	G	A	2.120e^-4	0.957	INTRON beat-Vc
3R	18895745	3R_18895745_SNP [dm3] 3R_23070023_SNP [dm6]	G	C	2.120e^-4	0.957	DOWNSTREAM CG13830 INTERGENIC
3R	19914356	3R_19914356_SNP [dm3] 3R_24088634_SNP [dm6]	A	G	2.131e^-4	0.957	INTRON 4EHP
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	2.134e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26178372	3R_26178372_SNP [dm3] 3R_30352650_SNP [dm6]	G	A	2.140e^-4	0.957	INTRON hdc
3L	2912170	3L_2912170_SNP [dm3] 3L_2912170_SNP [dm6]	A	C	2.143e^-4	0.957	INTRON Shab
3L	3986236	3L_3986236_SNP [dm3] 3L_3986236_SNP [dm6]	T	C	2.147e^-4	0.957	INTRON scrt
3R	14522392	3R_14522392_SNP [dm3] 3R_18696670_SNP [dm6]	T	A	2.148e^-4	0.957	DOWNSTREAM CG34282 INTERGENIC
3L	2763445	3L_2763445_SNP [dm3] 3L_2763445_SNP [dm6]	G	A	2.149e^-4	0.957	INTRON Mrtf
2L	9506617	2L_9506617_SNP [dm3] 2L_9506617_SNP [dm6]	A	T	2.152e^-4	0.957	INTRON CG33298
3R	16171067	3R_16171067_SNP [dm3] 3R_20345345_SNP [dm6]	G	A	2.163e^-4	0.957	INTERGENIC
X	8475616	X_8475616_SNP [dm3] X_8581583_SNP [dm6]	A	C	2.167e^-4	0.957	INTRON CG12065	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8355329	3R_8355329_SNP [dm3] 3R_12529607_SNP [dm6]	C	T	2.180e^-4	0.957	DOWNSTREAM Hug INTRON Octbeta3R
2L	8355163	2L_8355163_SNP [dm3] 2L_8355163_SNP [dm6]	A	G	2.181e^-4	0.957	UTR_3_PRIME Mur29B DOWNSTREAM CG7627
3L	8056633	3L_8056633_SNP [dm3] 3L_8063533_SNP [dm6]	T	A	2.181e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5075807	2R_5075807_SNP [dm3] 2R_9188302_SNP [dm6]	G	A	2.182e^-4	0.957	INTRON CG8026 & 1 other
2L	7455408	2L_7455408_SNP [dm3] 2L_7455408_SNP [dm6]	C	G	2.185e^-4	0.957	SYNONYMOUS_CODING Gr28b
3R	13326598	3R_13326598_SNP [dm3] 3R_17500876_SNP [dm6]	T	C	2.185e^-4	0.957	INTRON Dscam3
2R	12900313	2R_12900313_SNP [dm3] 2R_17012808_SNP [dm6]	A	T	2.190e^-4	0.957	INTRON Ehbp1
X	21005911	X_21005911_SNP [dm3] X_21134884_SNP [dm6]	G	C	2.196e^-4	0.957	SYNONYMOUS_CODING CG34120
X	3376569	X_3376569_DEL [dm3] X_3482536_DEL [dm6]	AA	A	2.200e^-4	0.957	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19949592	2R_19949592_SNP [dm3] 2R_24062069_SNP [dm6]	A	G	2.201e^-4	0.957	UPSTREAM Rap2l DOWNSTREAM RpL12 INTRON RpL39	TF binding site BDTNP1_TFBS_dl
2R	19949595	2R_19949595_INS [dm3] 2R_24062072_INS [dm6]	A	AACAACTAGATGAG...	2.201e^-4	0.957	UPSTREAM Rap2l DOWNSTREAM RpL12 INTRON RpL39	TF binding site BDTNP1_TFBS_dl
3L	8056815	3L_8056815_SNP [dm3] 3L_8063715_SNP [dm6]	T	A	2.212e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
X	16945382	X_16945382_SNP [dm3] X_17051349_SNP [dm6]	A	T	2.213e^-4	0.957	INTRON CG45002
2L	18346348	2L_18346348_SNP [dm3] 2L_18346348_SNP [dm6]	C	A	2.216e^-4	0.957	INTRON Fas3
2L	1978179	2L_1978179_SNP [dm3] 2L_1978179_SNP [dm6]	T	C	2.217e^-4	0.957	NON_SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17253401	3R_17253401_SNP [dm3] 3R_21427679_SNP [dm6]	G	A	2.227e^-4	0.957	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14265963	3L_14265963_DEL [dm3] 3L_14272863_DEL [dm6]	GATG	G	2.229e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27453560	3R_27453560_SNP [dm3] 3R_31627838_SNP [dm6]	T	A	2.235e^-4	0.957	INTRON kek6
3L	4805707	3L_4805707_SNP [dm3] 3L_4805707_SNP [dm6]	G	C	2.240e^-4	0.957	UPSTREAM CG7509 DOWNSTREAM CG18808 INTERGENIC	TF binding site mE1_TFBS_bab1
X	18416688	X_18416688_SNP [dm3] X_18522655_SNP [dm6]	A	G	2.244e^-4	0.957	UPSTREAM CG6481 INTRON Bx
3L	8056580	3L_8056580_SNP [dm3] 3L_8063480_SNP [dm6]	A	G	2.261e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7869391	3L_7869391_SNP [dm3] 3L_7876291_SNP [dm6]	T	C	2.261e^-4	0.957	INTRON CG32365
X	18658274	X_18658274_SNP [dm3] X_18764241_SNP [dm6]	G	T	2.263e^-4	0.957	DOWNSTREAM CCKLR-17D3 INTERGENIC
3R	5043877	3R_5043877_SNP [dm3] 3R_9218155_SNP [dm6]	T	A	2.265e^-4	0.957	INTRON pum	TF binding site mE1_TFBS_HSA
3L	7412824	3L_7412824_SNP [dm3] 3L_7419724_SNP [dm6]	G	A	2.277e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4255162	2L_4255162_SNP [dm3] 2L_4255162_SNP [dm6]	A	T	2.277e^-4	0.957	DOWNSTREAM CR45294 & 1 other INTERGENIC
2L	12553228	2L_12553228_SNP [dm3] 2L_12553228_SNP [dm6]	C	A	2.277e^-4	0.957	INTERGENIC
3L	14400919	3L_14400919_SNP [dm3] 3L_14407819_SNP [dm6]	A	G	2.285e^-4	0.957	INTRON stwl
3R	10694515	3R_10694515_SNP [dm3] 3R_14868793_SNP [dm6]	A	T	2.289e^-4	0.957	INTRON btsz
3R	8015069	3R_8015069_SNP [dm3] 3R_12189347_SNP [dm6]	C	G	2.289e^-4	0.957	INTERGENIC
2R	6997272	2R_6997272_SNP [dm3] 2R_11109767_SNP [dm6]	C	T	2.298e^-4	0.957	INTRON luna
X	21005808	X_21005808_SNP [dm3] X_21134781_SNP [dm6]	C	T	2.300e^-4	0.957	NON_SYNONYMOUS_CODING CG34120
2L	4823149	2L_4823149_SNP [dm3] 2L_4823149_SNP [dm6]	G	C	2.304e^-4	0.957	UTR_5_PRIME CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16239223	3R_16239223_SNP [dm3] 3R_20413501_SNP [dm6]	G	A	2.308e^-4	0.957	INTRON Gfrl
3R	16239225	3R_16239225_INS [dm3] 3R_20413503_INS [dm6]	G	ATCT	2.308e^-4	0.957	INTRON Gfrl
3R	16239230	3R_16239230_INS [dm3] 3R_20413508_INS [dm6]	T	TAGAA	2.308e^-4	0.957	INTRON Gfrl
3R	27456493	3R_27456493_SNP [dm3] 3R_31630771_SNP [dm6]	G	A	2.309e^-4	0.957	INTRON kek6
X	3793996	X_3793996_SNP [dm3] X_3899963_SNP [dm6]	T	G	2.311e^-4	0.957	INTRON CG42541
2R	12551612	2R_12551612_INS [dm3] 2R_16664107_INS [dm6]	G	GG	2.324e^-4	0.957	UTR_5_PRIME Picot UPSTREAM Picot
2L	7049592	2L_7049592_SNP [dm3] 2L_7049592_SNP [dm6]	A	G	2.330e^-4	0.957	UTR_5_PRIME milt UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3211205	2L_3211205_SNP [dm3] 2L_3211205_SNP [dm6]	C	A	2.332e^-4	0.957	DOWNSTREAM CR45336 INTERGENIC
3L	1398826	3L_1398826_SNP [dm3] 3L_1398826_SNP [dm6]	G	T	2.336e^-4	0.957	NON_SYNONYMOUS_CODING CG32320 DOWNSTREAM tRNA:E4:62Ab & 2 others INTRON Ptp61F
3L	15747611	3L_15747611_SNP [dm3] 3L_15754511_SNP [dm6]	A	T	2.351e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	454419	3L_454419_SNP [dm3] 3L_454419_SNP [dm6]	G	C	2.353e^-4	0.957	INTRON klar
X	17628540	X_17628540_SNP [dm3] X_17734507_SNP [dm6]	A	G	2.355e^-4	0.957	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2R	11045371	2R_11045371_SNP [dm3] 2R_15157866_SNP [dm6]	T	C	2.359e^-4	0.957	INTRON igl
2R	18316219	2R_18316219_SNP [dm3] 2R_22428714_SNP [dm6]	C	G	2.361e^-4	0.957	SYNONYMOUS_CODING ppk12
X	20592459	X_20592459_SNP [dm3] X_20721432_SNP [dm6]	G	A	2.364e^-4	0.957	INTERGENIC	silencer mE1_HDAC_PRE
2L	15187287	2L_15187287_SNP [dm3] 2L_15187287_SNP [dm6]	T	C	2.378e^-4	0.957	INTRON CG4168
3L	5504175	3L_5504175_SNP [dm3] 3L_5511075_SNP [dm6]	A	G	2.382e^-4	0.957	UPSTREAM CG34342 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7057136	2L_7057136_SNP [dm3] 2L_7057136_SNP [dm6]	C	G	2.388e^-4	0.957	UTR_5_PRIME Mnn1 INTRON Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	17238141	3L_17238141_SNP [dm3] 3L_17245041_SNP [dm6]	T	A	2.398e^-4	0.957	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC
X	4443076	X_4443076_SNP [dm3] X_4549043_SNP [dm6]	G	A	2.401e^-4	0.957	UPSTREAM CG15912 & 1 other DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	17124092	2R_17124092_INS [dm3] 2R_21236587_INS [dm6]	A	ACA	2.406e^-4	0.957	INTRON ASPP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12307854	3L_12307854_SNP [dm3] 3L_12314754_SNP [dm6]	G	T	2.409e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs
X	3928540	X_3928540_SNP [dm3] X_4034507_SNP [dm6]	G	A	2.409e^-4	0.957	INTERGENIC
3L	7634323	3L_7634323_SNP [dm3] 3L_7641223_SNP [dm6]	C	T	2.427e^-4	0.957	NON_SYNONYMOUS_CODING CG7506 UPSTREAM CG33276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	12141502	2L_12141502_SNP [dm3] 2L_12141502_SNP [dm6]	G	C	2.429e^-4	0.957	INTERGENIC
3L	10319364	3L_10319364_SNP [dm3] 3L_10326264_SNP [dm6]	T	C	2.430e^-4	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	17323237	3R_17323237_SNP [dm3] 3R_21497515_SNP [dm6]	G	A	2.432e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19222985	2R_19222985_SNP [dm3] 2R_23335462_SNP [dm6]	T	C	2.440e^-4	0.957	INTERGENIC
3R	19914336	3R_19914336_SNP [dm3] 3R_24088614_SNP [dm6]	A	C	2.442e^-4	0.957	INTRON 4EHP
2L	11229843	2L_11229843_SNP [dm3] 2L_11229843_SNP [dm6]	T	G	2.444e^-4	0.957	INTRON ab
2L	4358026	2L_4358026_SNP [dm3] 2L_4358026_SNP [dm6]	G	A	2.447e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cnc mE1_TFBS_HSA
X	739630	X_739630_SNP [dm3] X_845597_SNP [dm6]	A	G	2.449e^-4	0.957	DOWNSTREAM CG3713 & 1 other INTRON CG43867
2R	9651678	2R_9651678_SNP [dm3] 2R_13764173_SNP [dm6]	C	T	2.449e^-4	0.957	INTERGENIC
3R	14404000	3R_14404000_SNP [dm3] 3R_18578278_SNP [dm6]	T	G	2.456e^-4	0.957	INTRON fray & 1 other
X	16909935	X_16909935_SNP [dm3] X_17015902_SNP [dm6]	G	A	2.460e^-4	0.957	INTRON CG45002
X	21292677	X_21292677_SNP [dm3] X_21421650_SNP [dm6]	T	C	2.467e^-4	0.957	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
3R	7349158	3R_7349158_SNP [dm3] 3R_11523436_SNP [dm6]	A	T	2.473e^-4	0.957	INTERGENIC
3L	9628841	3L_9628841_SNP [dm3] 3L_9635741_SNP [dm6]	C	T	2.473e^-4	0.957	SYNONYMOUS_CODING fry
2R	16834820	2R_16834820_SNP [dm3] 2R_20947315_SNP [dm6]	C	T	2.476e^-4	0.957	DOWNSTREAM Act57B INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5306991	3L_5306991_SNP [dm3] 3L_5313891_SNP [dm6]	T	A	2.479e^-4	0.957	INTERGENIC
X	7226417	X_7226417_SNP [dm3] X_7332384_SNP [dm6]	A	C	2.488e^-4	0.957	UPSTREAM CG42780 INTRON CR44357 & 1 other	TF binding site mE1_TFBS_bab1
X	7226418	X_7226418_SNP [dm3] X_7332385_SNP [dm6]	T	C	2.488e^-4	0.957	UPSTREAM CG42780 INTRON CR44357 & 1 other	TF binding site mE1_TFBS_bab1
3R	25068951	3R_25068951_SNP [dm3] 3R_29243229_SNP [dm6]	G	A	2.494e^-4	0.957	SYNONYMOUS_CODING CG31445
3L	3357439	3L_3357439_SNP [dm3] 3L_3357439_SNP [dm6]	C	T	2.499e^-4	0.957	SYNONYMOUS_CODING kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
X	6185179	X_6185179_SNP [dm3] X_6291146_SNP [dm6]	A	T	2.501e^-4	0.957	UTR_5_PRIME Rpt4 UPSTREAM CG15896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8457132	3R_8457132_SNP [dm3] 3R_12631410_SNP [dm6]	T	A	2.502e^-4	0.957	NON_SYNONYMOUS_CODING Not10 DOWNSTREAM Snx3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2253154	3L_2253154_SNP [dm3] 3L_2253154_SNP [dm6]	C	T	2.508e^-4	0.957	SYNONYMOUS_CODING CG1275 DOWNSTREAM CG32305	TF binding site mE1_TFBS_cad
3R	26042029	3R_26042029_SNP [dm3] 3R_30216307_SNP [dm6]	C	T	2.515e^-4	0.957	UPSTREAM CecC INTERGENIC
X	2704951	X_2704951_SNP [dm3] X_2810918_SNP [dm6]	A	G	2.524e^-4	0.957	DOWNSTREAM CG12498 INTRON kirre	TF binding site mE1_TFBS_sbb
3R	16753924	3R_16753924_SNP [dm3] 3R_20928202_SNP [dm6]	A	G	2.530e^-4	0.957	UTR_3_PRIME hdly DOWNSTREAM hdly INTRON CG31191 & 1 other
2L	10691066	2L_10691066_SNP [dm3] 2L_10691066_SNP [dm6]	G	A	2.530e^-4	0.957	INTERGENIC
2R	16925053	2R_16925053_SNP [dm3] 2R_21037548_SNP [dm6]	A	C	2.532e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	535416	3L_535416_SNP [dm3] 3L_535416_SNP [dm6]	T	A	2.536e^-4	0.957	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24741224	3R_24741224_SNP [dm3] 3R_28915502_SNP [dm6]	A	G	2.541e^-4	0.957	INTRON Doa
2R	13302804	2R_13302804_SNP [dm3] 2R_17415299_SNP [dm6]	G	A	2.543e^-4	0.957	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo
3R	13326584	3R_13326584_SNP [dm3] 3R_17500862_SNP [dm6]	G	A	2.550e^-4	0.957	INTRON Dscam3
X	3603832	X_3603832_DEL [dm3] X_3709799_DEL [dm6]	GG	G	2.555e^-4	0.957	INTRON Rala
X	3372048	X_3372048_SNP [dm3] X_3478015_SNP [dm6]	G	C	2.555e^-4	0.957	UTR_3_PRIME CG10804 INTRON CR44999
X	19357808	X_19357808_SNP [dm3] X_19463775_SNP [dm6]	C	T	2.557e^-4	0.957	INTRON kek5
3L	1324991	3L_1324991_SNP [dm3] 3L_1324991_SNP [dm6]	T	C	2.565e^-4	0.957	UPSTREAM Myo61F & 1 other INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17255583	2R_17255583_DEL [dm3] 2R_21368078_DEL [dm6]	GAAAACATCG	A	2.573e^-4	0.957	INTRON cv-2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10319405	3L_10319405_DEL [dm3] 3L_10326305_DEL [dm6]	TATAA	T	2.573e^-4	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3L	10319417	3L_10319417_SNP [dm3] 3L_10326317_SNP [dm6]	A	T	2.573e^-4	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	13326576	3R_13326576_SNP [dm3] 3R_17500854_SNP [dm6]	C	T	2.579e^-4	0.957	INTRON Dscam3
3R	22129175	3R_22129175_SNP [dm3] 3R_26303453_SNP [dm6]	A	T	2.581e^-4	0.957	INTERGENIC
X	11062850	X_11062850_SNP [dm3] X_11168817_SNP [dm6]	T	C	2.586e^-4	0.957	SYNONYMOUS_CODING antdh DOWNSTREAM CG1394
2R	12585376	2R_12585376_SNP [dm3] 2R_16697871_SNP [dm6]	C	T	2.586e^-4	0.957	INTRON CG30463
3L	14643933	3L_14643933_SNP [dm3] 3L_14650833_SNP [dm6]	A	T	2.613e^-4	0.957	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3R	15166937	3R_15166937_SNP [dm3] 3R_19341215_SNP [dm6]	G	C	2.620e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8187349	3R_8187349_SNP [dm3] 3R_12361627_SNP [dm6]	A	G	2.623e^-4	0.957	INTRON CG4115
3L	1462458	3L_1462458_SNP [dm3] 3L_1462458_SNP [dm6]	C	T	2.625e^-4	0.957	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7431038	2L_7431038_SNP [dm3] 2L_7431038_SNP [dm6]	G	A	2.634e^-4	0.957	DOWNSTREAM CG5261 INTRON CG5958
3L	6088705	3L_6088705_SNP [dm3] 3L_6095605_SNP [dm6]	A	G	2.638e^-4	0.957	UPSTREAM CG10467 INTRON loj
3L	10980398	3L_10980398_DEL [dm3] 3L_10987298_DEL [dm6]	CC	C	2.640e^-4	0.957	INTRON klu
3R	7157800	3R_7157800_SNP [dm3] 3R_11332078_SNP [dm6]	T	A	2.651e^-4	0.957	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
X	19861909	X_19861909_SNP [dm3] X_19967876_SNP [dm6]	A	G	2.651e^-4	0.957	UTR_3_PRIME Nep3
3R	9137990	3R_9137990_SNP [dm3] 3R_13312268_SNP [dm6]	C	T	2.652e^-4	0.957	SYNONYMOUS_CODING CG32473 DOWNSTREAM CG44142
2L	4354124	2L_4354124_SNP [dm3] 2L_4354124_SNP [dm6]	A	G	2.657e^-4	0.957	DOWNSTREAM CG15429 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	10538876	2L_10538876_SNP [dm3] 2L_10538876_SNP [dm6]	A	G	2.660e^-4	0.957	INTERGENIC
X	18658263	X_18658263_SNP [dm3] X_18764230_SNP [dm6]	G	A	2.683e^-4	0.957	DOWNSTREAM CCKLR-17D3 INTERGENIC
3L	981242	3L_981242_SNP [dm3] 3L_981242_SNP [dm6]	C	T	2.688e^-4	0.957	DOWNSTREAM Glut1 INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8555125	2R_8555125_SNP [dm3] 2R_12667620_SNP [dm6]	A	T	2.696e^-4	0.957	INTRON nemy
X	8367485	X_8367485_SNP [dm3] X_8473452_SNP [dm6]	C	T	2.696e^-4	0.957	UPSTREAM Cp7Fb DOWNSTREAM Cp7Fa INTRON CG33223
3L	21465570	3L_21465570_SNP [dm3] 3L_21472470_SNP [dm6]	T	C	2.705e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10345259	X_10345259_SNP [dm3] X_10451226_SNP [dm6]	T	C	2.705e^-4	0.957	INTRON CG32683
3L	2808982	3L_2808982_SNP [dm3] 3L_2808982_SNP [dm6]	T	G	2.718e^-4	0.957	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	9946640	2L_9946640_DEL [dm3] 2L_9946640_DEL [dm6]	CC	C	2.719e^-4	0.957	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14282670	X_14282670_SNP [dm3] X_14388637_SNP [dm6]	T	G	2.728e^-4	0.957	INTRON dpr8
2L	4891404	2L_4891404_SNP [dm3] 2L_4891404_SNP [dm6]	G	A	2.729e^-4	0.957	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9981336	3R_9981336_SNP [dm3] 3R_14155614_SNP [dm6]	G	T	2.736e^-4	0.957	SYNONYMOUS_CODING CG31533	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8079325	X_8079325_SNP [dm3] X_8185292_SNP [dm6]	T	A	2.754e^-4	0.957	INTRON sdt
3R	9130800	3R_9130800_SNP [dm3] 3R_13305078_SNP [dm6]	G	A	2.756e^-4	0.957	INTRON CG32473	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12453507	3R_12453507_SNP [dm3] 3R_16627785_SNP [dm6]	C	T	2.759e^-4	0.957	INTRON Fas1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12278375	3L_12278375_INS [dm3] 3L_12285275_INS [dm6]	T	TTT	2.764e^-4	0.957	INTERGENIC
3L	9550547	3L_9550547_SNP [dm3] 3L_9557447_SNP [dm6]	T	C	2.766e^-4	0.957	INTRON CG42673
2R	11891703	2R_11891703_SNP [dm3] 2R_16004198_SNP [dm6]	A	G	2.772e^-4	0.957	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25785927	3R_25785927_SNP [dm3] 3R_29960205_SNP [dm6]	G	A	2.784e^-4	0.957	INTRON TkR99D
3R	5036791	3R_5036791_SNP [dm3] 3R_9211069_SNP [dm6]	G	A	2.785e^-4	0.957	INTRON pum
3R	17248115	3R_17248115_SNP [dm3] 3R_21422393_SNP [dm6]	T	G	2.802e^-4	0.957	INTRON lbl
3L	14265984	3L_14265984_SNP [dm3] 3L_14272884_SNP [dm6]	G	A	2.803e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7364813	2R_7364813_SNP [dm3] 2R_11477308_SNP [dm6]	C	G	2.814e^-4	0.957	INTRON inv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	745295	X_745295_SNP [dm3] X_851262_SNP [dm6]	T	A	2.823e^-4	0.957	INTRON CG43867
3L	4482197	3L_4482197_SNP [dm3] 3L_4482197_SNP [dm6]	G	A	2.829e^-4	0.957	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3R	10261693	3R_10261693_SNP [dm3] 3R_14435971_SNP [dm6]	T	C	2.830e^-4	0.957	INTRON cv-c
2R	3728047	2R_3728047_SNP [dm3] 2R_7840542_SNP [dm6]	T	A	2.831e^-4	0.957	INTRON Dgk
3L	14361405	3L_14361405_INS [dm3] 3L_14368305_INS [dm6]	A	ACA	2.833e^-4	0.957	UTR_3_PRIME fz DOWNSTREAM CG13481
2R	15677313	2R_15677313_SNP [dm3] 2R_19789808_SNP [dm6]	A	G	2.833e^-4	0.957	DOWNSTREAM CR45231 INTERGENIC
2L	3884498	2L_3884498_SNP [dm3] 2L_3884498_SNP [dm6]	G	A	2.842e^-4	0.957	NON_SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_cad
X	17332736	X_17332736_SNP [dm3] X_17438703_SNP [dm6]	T	G	2.844e^-4	0.957	INTRON CG12994
3R	11595474	3R_11595474_SNP [dm3] 3R_15769752_SNP [dm6]	G	A	2.844e^-4	0.957	INTERGENIC
3L	1324820	3L_1324820_SNP [dm3] 3L_1324820_SNP [dm6]	G	A	2.846e^-4	0.957	UPSTREAM Myo61F & 1 other INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	1176084	X_1176084_SNP [dm3] X_1282051_SNP [dm6]	T	C	2.855e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2407817	3L_2407817_SNP [dm3] 3L_2407817_SNP [dm6]	T	A	2.855e^-4	0.957	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6993020	2R_6993020_SNP [dm3] 2R_11105515_SNP [dm6]	G	A	2.860e^-4	0.957	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3456455	2L_3456455_SNP [dm3] 2L_3456455_SNP [dm6]	C	T	2.864e^-4	0.957	SYNONYMOUS_CODING Cog3 UPSTREAM Sec5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7968223	2L_7968223_SNP [dm3] 2L_7968223_SNP [dm6]	G	A	2.865e^-4	0.957	INTRON Snoo
3R	27453592	3R_27453592_SNP [dm3] 3R_31627870_SNP [dm6]	C	T	2.880e^-4	0.957	INTRON kek6
2R	14216720	2R_14216720_SNP [dm3] 2R_18329215_SNP [dm6]	A	G	2.882e^-4	0.957	INTRON sbb
X	21006601	X_21006601_SNP [dm3] X_21135574_SNP [dm6]	T	G	2.890e^-4	0.957	INTRON CG34120
3R	21467923	3R_21467923_SNP [dm3] 3R_25642201_SNP [dm6]	C	G	2.898e^-4	0.957	INTRON jigr1
2R	9557438	2R_9557438_SNP [dm3] 2R_13669933_SNP [dm6]	G	A	2.902e^-4	0.957	NON_SYNONYMOUS_CODING CG18368 INTRON fas
3L	6804984	3L_6804984_SNP [dm3] 3L_6811884_SNP [dm6]	T	A	2.925e^-4	0.957	INTERGENIC
X	5462658	X_5462658_SNP [dm3] X_5568625_SNP [dm6]	T	A	2.938e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	19212863	3R_19212863_INS [dm3] 3R_23387141_INS [dm6]	T	TT	2.945e^-4	0.957	INTERGENIC
X	11773060	X_11773060_SNP [dm3] X_11879027_SNP [dm6]	T	C	2.946e^-4	0.957	INTRON CG10353	TF binding site mE1_TFBS_sens
3R	15756403	3R_15756403_SNP [dm3] 3R_19930681_SNP [dm6]	T	G	2.952e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4283365	2L_4283365_SNP [dm3] 2L_4283365_SNP [dm6]	G	T	2.956e^-4	0.957	UPSTREAM tutl INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	24998794	3R_24998794_SNP [dm3] 3R_29173072_SNP [dm6]	A	C	2.958e^-4	0.957	UTR_3_PRIME CG14509 DOWNSTREAM CG14509
2L	18477591	2L_18477591_SNP [dm3] 2L_18477591_SNP [dm6]	C	A	2.959e^-4	0.957	INTRON CG10283
X	16004030	X_16004030_SNP [dm3] X_16109997_SNP [dm6]	T	A	2.966e^-4	0.957	INTERGENIC
3R	10896949	3R_10896949_SNP [dm3] 3R_15071227_SNP [dm6]	T	A	2.967e^-4	0.957	INTRON dpr9
3R	16238091	3R_16238091_SNP [dm3] 3R_20412369_SNP [dm6]	C	T	2.969e^-4	0.957	INTRON Gfrl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7627070	3L_7627070_DEL [dm3] 3L_7633970_DEL [dm6]	TACAGATAAA	T	2.980e^-4	0.957	INTRON CG33275
3L	13845149	3L_13845149_SNP [dm3] 3L_13852049_SNP [dm6]	G	A	2.988e^-4	0.957	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7635068	3L_7635068_SNP [dm3] 3L_7641968_SNP [dm6]	G	A	2.990e^-4	0.957	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2140937	2R_2140937_SNP [dm3] 2R_6253432_SNP [dm6]	T	C	3.000e^-4	0.957	INTRON Pld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17019311	X_17019311_SNP [dm3] X_17125278_SNP [dm6]	A	G	3.011e^-4	0.957	UPSTREAM CG5004 INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	10778190	X_10778190_DEL [dm3] X_10884157_DEL [dm6]	TCTCGATGAT	T	3.011e^-4	0.957	INTRON Ork1
2L	20702399	2L_20702399_SNP [dm3] 2L_20702399_SNP [dm6]	C	T	3.014e^-4	0.957	INTRON Hr38
2L	7029962	2L_7029962_SNP [dm3] 2L_7029962_SNP [dm6]	A	T	3.022e^-4	0.957	DOWNSTREAM Rab30 INTERGENIC
2L	4366067	2L_4366067_SNP [dm3] 2L_4366067_SNP [dm6]	T	A	3.029e^-4	0.957	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11233155	2L_11233155_DEL [dm3] 2L_11233155_DEL [dm6]	TT	T	3.030e^-4	0.957	INTRON ab
2R	12571167	2R_12571167_SNP [dm3] 2R_16683662_SNP [dm6]	G	T	3.031e^-4	0.957	INTRON CG30463
3R	16314890	3R_16314890_SNP [dm3] 3R_20489168_SNP [dm6]	A	G	3.037e^-4	0.957	INTERGENIC
3L	7105951	3L_7105951_SNP [dm3] 3L_7112851_SNP [dm6]	T	G	3.039e^-4	0.957	INTRON form3
3L	2747059	3L_2747059_SNP [dm3] 3L_2747059_SNP [dm6]	C	T	3.049e^-4	0.957	INTRON Mrtf
X	8475670	X_8475670_SNP [dm3] X_8581637_SNP [dm6]	G	A	3.063e^-4	0.957	INTRON CG12065
3L	7639457	3L_7639457_SNP [dm3] 3L_7646357_SNP [dm6]	G	A	3.063e^-4	0.957	INTERGENIC
2L	4679430	2L_4679430_SNP [dm3] 2L_4679430_SNP [dm6]	G	T	3.063e^-4	0.957	INTERGENIC
2L	11235116	2L_11235116_SNP [dm3] 2L_11235116_SNP [dm6]	C	A	3.072e^-4	0.957	DOWNSTREAM snoRNA:Me18S-G642 INTRON ab
3L	1464037	3L_1464037_SNP [dm3] 3L_1464037_SNP [dm6]	A	C	3.076e^-4	0.957	UTR_5_PRIME rho INTRON Ptp61F	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3523712	2R_3523712_SNP [dm3] 2R_7636207_SNP [dm6]	C	T	3.080e^-4	0.957	UPSTREAM CR45131 & 1 other INTRON CG43340
2L	3705650	2L_3705650_SNP [dm3] 2L_3705650_SNP [dm6]	A	T	3.089e^-4	0.957	UPSTREAM CG31778 DOWNSTREAM CG31777 INTERGENIC
X	18019901	X_18019901_DEL [dm3] X_18125868_DEL [dm6]	GAAAGGGGCGTCTGCAACGT...	G	3.097e^-4	0.957	INTRON CG32553
3R	27104997	3R_27104997_SNP [dm3] 3R_31279275_SNP [dm6]	A	G	3.099e^-4	0.957	INTERGENIC
3L	4090499	3L_4090499_SNP [dm3] 3L_4090499_SNP [dm6]	A	G	3.101e^-4	0.957	SYNONYMOUS_CODING CG14989	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15756452	3R_15756452_SNP [dm3] 3R_19930730_SNP [dm6]	C	A	3.105e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	9327803	3R_9327803_SNP [dm3] 3R_13502081_SNP [dm6]	T	A	3.108e^-4	0.957	INTERGENIC
3L	5305665	3L_5305665_SNP [dm3] 3L_5312565_SNP [dm6]	A	T	3.109e^-4	0.957	INTERGENIC
3L	17340955	3L_17340955_SNP [dm3] 3L_17347855_SNP [dm6]	A	G	3.110e^-4	0.957	INTRON Mip
2L	9618789	2L_9618789_SNP [dm3] 2L_9618789_SNP [dm6]	G	A	3.112e^-4	0.957	INTRON GlcAT-S
X	747021	X_747021_SNP [dm3] X_852988_SNP [dm6]	C	A	3.113e^-4	0.957	INTRON CG43867
3R	17708407	3R_17708407_SNP [dm3] 3R_21882685_SNP [dm6]	T	G	3.124e^-4	0.957	NON_SYNONYMOUS_CODING CG31465 EXON CR45046
2R	8725007	2R_8725007_SNP [dm3] 2R_12837502_SNP [dm6]	G	C	3.129e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14341727	X_14341727_SNP [dm3] X_14447694_SNP [dm6]	G	A	3.142e^-4	0.957	INTRON dpr8
X	14341812	X_14341812_SNP [dm3] X_14447779_SNP [dm6]	C	G	3.142e^-4	0.957	INTRON dpr8
2R	15726624	2R_15726624_SNP [dm3] 2R_19839119_SNP [dm6]	T	C	3.147e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_cad
X	14347362	X_14347362_SNP [dm3] X_14453329_SNP [dm6]	C	T	3.157e^-4	0.957	INTRON dpr8
3R	6276035	3R_6276035_SNP [dm3] 3R_10450313_SNP [dm6]	A	G	3.157e^-4	0.957	INTERGENIC
3R	17558385	3R_17558385_SNP [dm3] 3R_21732663_SNP [dm6]	G	C	3.158e^-4	0.957	INTERGENIC
X	18973538	X_18973538_SNP [dm3] X_19079505_SNP [dm6]	G	C	3.172e^-4	0.957	DOWNSTREAM CG7406 INTERGENIC
3L	2748115	3L_2748115_SNP [dm3] 3L_2748115_SNP [dm6]	T	A	3.174e^-4	0.957	INTRON Mrtf
2L	4369652	2L_4369652_SNP [dm3] 2L_4369652_SNP [dm6]	C	A	3.179e^-4	0.957	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11145023	2L_11145023_SNP [dm3] 2L_11145023_SNP [dm6]	C	T	3.184e^-4	0.957	SYNONYMOUS_CODING CG31867 INTRON Gyc32E
3L	7869141	3L_7869141_SNP [dm3] 3L_7876041_SNP [dm6]	A	T	3.192e^-4	0.957	INTRON CG32365
X	14282470	X_14282470_SNP [dm3] X_14388437_SNP [dm6]	G	T	3.204e^-4	0.957	INTRON dpr8
3L	21465569	3L_21465569_SNP [dm3] 3L_21472469_SNP [dm6]	C	A	3.206e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14784018	2L_14784018_SNP [dm3] 2L_14784018_SNP [dm6]	C	T	3.218e^-4	0.957	SYNONYMOUS_CODING CG18636 UPSTREAM CR15280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21214035	X_21214035_SNP [dm3] X_21343008_SNP [dm6]	A	G	3.220e^-4	0.957	SYNONYMOUS_CODING fliI	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3356341	3L_3356341_SNP [dm3] 3L_3356341_SNP [dm6]	A	G	3.229e^-4	0.957	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19422566	X_19422566_SNP [dm3] X_19528533_SNP [dm6]	A	C	3.238e^-4	0.957	INTRON CoRest
3R	10766347	3R_10766347_DEL [dm3] 3R_14940625_DEL [dm6]	TTC	T	3.241e^-4	0.957	INTERGENIC
3R	25146940	3R_25146940_SNP [dm3] 3R_29321218_SNP [dm6]	T	A	3.243e^-4	0.957	INTERGENIC
2R	12388325	2R_12388325_SNP [dm3] 2R_16500820_SNP [dm6]	A	T	3.246e^-4	0.957	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22268155	3R_22268155_DEL [dm3] 3R_26442433_DEL [dm6]	AAA	A	3.247e^-4	0.957	INTRON tx
3R	26684507	3R_26684507_SNP [dm3] 3R_30858785_SNP [dm6]	A	T	3.250e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27452478	3R_27452478_SNP [dm3] 3R_31626756_SNP [dm6]	A	C	3.276e^-4	0.957	INTRON kek6
3R	5716378	3R_5716378_SNP [dm3] 3R_9890656_SNP [dm6]	C	T	3.277e^-4	0.957	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14265988	3L_14265988_SNP [dm3] 3L_14272888_SNP [dm6]	A	G	3.280e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8810189	3L_8810189_DEL [dm3] 3L_8817089_DEL [dm6]	GC	A	3.282e^-4	0.957	INTERGENIC
3R	5036783	3R_5036783_SNP [dm3] 3R_9211061_SNP [dm6]	A	G	3.288e^-4	0.957	INTRON pum
3R	18253380	3R_18253380_SNP [dm3] 3R_22427658_SNP [dm6]	A	G	3.291e^-4	0.957	SYNONYMOUS_CODING CG13847
2L	10676724	2L_10676724_SNP [dm3] 2L_10676724_SNP [dm6]	A	G	3.292e^-4	0.957	UPSTREAM CG17104 INTERGENIC
3R	920157	3R_920157_SNP [dm3] 3R_5094435_SNP [dm6]	C	T	3.293e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8475683	X_8475683_SNP [dm3] X_8581650_SNP [dm6]	A	G	3.295e^-4	0.957	INTRON CG12065
3R	22123762	3R_22123762_SNP [dm3] 3R_26298040_SNP [dm6]	C	T	3.311e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10766344	3R_10766344_SNP [dm3] 3R_14940622_SNP [dm6]	G	T	3.315e^-4	0.957	INTERGENIC
X	16676296	X_16676296_INS [dm3] X_16782263_INS [dm6]	T	TT	3.321e^-4	0.957	INTRON if	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	18119507	2R_18119507_SNP [dm3] 2R_22232002_SNP [dm6]	G	A	3.322e^-4	0.957	INTERGENIC
3R	16171189	3R_16171189_SNP [dm3] 3R_20345467_SNP [dm6]	A	G	3.331e^-4	0.957	INTERGENIC
3R	10738879	3R_10738879_SNP [dm3] 3R_14913157_SNP [dm6]	A	T	3.335e^-4	0.957	INTERGENIC
3R	10742391	3R_10742391_SNP [dm3] 3R_14916669_SNP [dm6]	G	A	3.335e^-4	0.957	INTERGENIC
2L	18422600	2L_18422600_SNP [dm3] 2L_18422600_SNP [dm6]	A	G	3.344e^-4	0.957	INTERGENIC
3L	7635110	3L_7635110_SNP [dm3] 3L_7642010_SNP [dm6]	T	C	3.344e^-4	0.957	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1288864	3R_1288864_DEL [dm3] 3R_5463142_DEL [dm6]	TAGATTCAAGTAATGATTTG...	T	3.345e^-4	0.957	UPSTREAM PEK INTRON PEK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2407514	3L_2407514_SNP [dm3] 3L_2407514_SNP [dm6]	A	T	3.346e^-4	0.957	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16313275	3R_16313275_SNP [dm3] 3R_20487553_SNP [dm6]	T	C	3.364e^-4	0.957	UPSTREAM CR44401 INTERGENIC
3R	10766326	3R_10766326_DEL [dm3] 3R_14940604_DEL [dm6]	CA	C	3.369e^-4	0.957	INTERGENIC
3R	3852681	3R_3852681_INS [dm3] 3R_8026959_INS [dm6]	T	TTTT	3.370e^-4	0.957	UTR_5_PRIME CG2747 INTRON CG2747	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6961515	3L_6961515_SNP [dm3] 3L_6968415_SNP [dm6]	A	T	3.371e^-4	0.957	UPSTREAM CG10064 INTRON Mis12
3L	981244	3L_981244_SNP [dm3] 3L_981244_SNP [dm6]	A	C	3.382e^-4	0.957	DOWNSTREAM Glut1 INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18231522	2L_18231522_SNP [dm3] 2L_18231522_SNP [dm6]	A	G	3.396e^-4	0.957	INTRON CG42750
X	11108025	X_11108025_SNP [dm3] X_11213992_SNP [dm6]	T	A	3.406e^-4	0.957	INTERGENIC
X	19860549	X_19860549_SNP [dm3] X_19966516_SNP [dm6]	T	C	3.413e^-4	0.957	SYNONYMOUS_CODING Nep3
X	21005587	X_21005587_SNP [dm3] X_21134560_SNP [dm6]	C	T	3.423e^-4	0.957	SYNONYMOUS_CODING CG34120 DOWNSTREAM CG34120
3R	12025714	3R_12025714_SNP [dm3] 3R_16199992_SNP [dm6]	G	T	3.423e^-4	0.957	INTRON CG6126	TF binding site mE1_TFBS_cad
2R	12653770	2R_12653770_SNP [dm3] 2R_16766265_SNP [dm6]	C	G	3.425e^-4	0.957	UPSTREAM CG5348 & 2 others INTRON unc-104
X	16004072	X_16004072_SNP [dm3] X_16110039_SNP [dm6]	A	G	3.426e^-4	0.957	INTERGENIC
3R	17253412	3R_17253412_SNP [dm3] 3R_21427690_SNP [dm6]	G	C	3.427e^-4	0.957	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2763797	3L_2763797_SNP [dm3] 3L_2763797_SNP [dm6]	C	G	3.428e^-4	0.957	INTRON Mrtf
2L	10673736	2L_10673736_SNP [dm3] 2L_10673736_SNP [dm6]	C	G	3.432e^-4	0.957	INTERGENIC
X	15855564	X_15855564_SNP [dm3] X_15961531_SNP [dm6]	T	G	3.439e^-4	0.957	INTRON mmd
3L	13163006	3L_13163006_SNP [dm3] 3L_13169906_SNP [dm6]	C	T	3.442e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	3138562	2L_3138562_SNP [dm3] 2L_3138562_SNP [dm6]	G	A	3.445e^-4	0.957	INTRON toc
3R	15756723	3R_15756723_SNP [dm3] 3R_19931001_SNP [dm6]	A	G	3.446e^-4	0.957	DOWNSTREAM mira INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	5465555	X_5465555_SNP [dm3] X_5571522_SNP [dm6]	G	A	3.446e^-4	0.957	INTERGENIC
2R	17431711	2R_17431711_SNP [dm3] 2R_21544206_SNP [dm6]	G	A	3.453e^-4	0.957	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	18430772	2L_18430772_SNP [dm3] 2L_18430772_SNP [dm6]	G	A	3.469e^-4	0.957	INTERGENIC
3R	16725798	3R_16725798_SNP [dm3] 3R_20900076_SNP [dm6]	A	C	3.485e^-4	0.957	INTERGENIC
3L	8056741	3L_8056741_SNP [dm3] 3L_8063641_SNP [dm6]	G	A	3.487e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7861588	3L_7861588_SNP [dm3] 3L_7868488_SNP [dm6]	T	A	3.495e^-4	0.957	UPSTREAM CG32365 INTERGENIC
3L	13228716	3L_13228716_SNP [dm3] 3L_13235616_SNP [dm6]	C	T	3.500e^-4	0.957	INTRON caps
3R	24749642	3R_24749642_SNP [dm3] 3R_28923920_SNP [dm6]	T	G	3.501e^-4	0.957	INTRON CG11828
3R	15757648	3R_15757648_INS [dm3] 3R_19931926_INS [dm6]	A	AGTTTAACGA	3.503e^-4	0.957	UTR_3_PRIME mira DOWNSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13092976	3L_13092976_SNP [dm3] 3L_13099876_SNP [dm6]	G	T	3.507e^-4	0.957	INTERGENIC
3R	10766331	3R_10766331_SNP [dm3] 3R_14940609_SNP [dm6]	G	A	3.520e^-4	0.957	INTERGENIC
3L	981277	3L_981277_SNP [dm3] 3L_981277_SNP [dm6]	C	T	3.520e^-4	0.957	DOWNSTREAM Glut1 INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9736542	3L_9736542_SNP [dm3] 3L_9743442_SNP [dm6]	C	A	3.532e^-4	0.957	INTRON CG42268 & 1 other
3R	4916281	3R_4916281_SNP [dm3] 3R_9090559_SNP [dm6]	C	T	3.548e^-4	0.957	INTRON pum
3L	3871672	3L_3871672_SNP [dm3] 3L_3871672_SNP [dm6]	A	G	3.552e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12405658	2R_12405658_SNP [dm3] 2R_16518153_SNP [dm6]	A	T	3.556e^-4	0.957	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	15686455	3L_15686455_SNP [dm3] 3L_15693355_SNP [dm6]	A	G	3.557e^-4	0.957	INTERGENIC	silencer mE1_HDAC_PRE
X	15678017	X_15678017_INS [dm3] X_15783984_INS [dm6]	A	ACAA	3.563e^-4	0.957	UPSTREAM Efhc1.1 DOWNSTREAM Paf-AHalpha INTERGENIC
X	6134765	X_6134765_SNP [dm3] X_6240732_SNP [dm6]	G	T	3.571e^-4	0.957	DOWNSTREAM Rbcn-3A & 1 other INTERGENIC
3R	19212860	3R_19212860_SNP [dm3] 3R_23387138_SNP [dm6]	G	T	3.572e^-4	0.957	INTERGENIC
2R	6744356	2R_6744356_DEL [dm3] 2R_10856851_DEL [dm6]	AA	A	3.581e^-4	0.957	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
X	15300371	X_15300371_SNP [dm3] X_15406338_SNP [dm6]	A	C	3.582e^-4	0.957	UTR_3_PRIME Cngl INTRON Cngl
X	15900509	X_15900509_SNP [dm3] X_16006476_SNP [dm6]	T	C	3.583e^-4	0.957	UPSTREAM vap INTRON CG12698	TF binding site mE1_TFBS_ttk
3L	6089824	3L_6089824_DEL [dm3] 3L_6096724_DEL [dm6]	ATATGGGAGTAAGTT...	A	3.590e^-4	0.957	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
3L	8526464	3L_8526464_SNP [dm3] 3L_8533364_SNP [dm6]	C	T	3.608e^-4	0.957	UTR_3_PRIME foi
X	4443358	X_4443358_SNP [dm3] X_4549325_SNP [dm6]	T	C	3.609e^-4	0.957	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	18322591	3R_18322591_SNP [dm3] 3R_22496869_SNP [dm6]	A	G	3.615e^-4	0.957	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
X	3439492	X_3439492_SNP [dm3] X_3545459_SNP [dm6]	G	A	3.616e^-4	0.957	DOWNSTREAM CR34335 INTRON CG32791
3R	7739629	3R_7739629_SNP [dm3] 3R_11913907_SNP [dm6]	C	T	3.616e^-4	0.957	INTRON Cad87A
3R	17071332	3R_17071332_SNP [dm3] 3R_21245610_SNP [dm6]	C	T	3.626e^-4	0.957	DOWNSTREAM CG5892 INTERGENIC
3R	4349962	3R_4349962_SNP [dm3] 3R_8524240_SNP [dm6]	C	G	3.631e^-4	0.957	UTR_5_PRIME CG31259 DOWNSTREAM CG31454
2L	3587559	2L_3587559_SNP [dm3] 2L_3587559_SNP [dm6]	G	T	3.631e^-4	0.957	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3L	5331763	3L_5331763_SNP [dm3] 3L_5338663_SNP [dm6]	C	A	3.637e^-4	0.957	INTERGENIC
3R	3998780	3R_3998780_SNP [dm3] 3R_8173058_SNP [dm6]	C	T	3.641e^-4	0.957	INTRON grn	TF binding site mE1_TFBS_inv
3R	18160638	3R_18160638_SNP [dm3] 3R_22334916_SNP [dm6]	C	T	3.645e^-4	0.957	UTR_3_PRIME CG5388 UPSTREAM CG5391
3R	10766343	3R_10766343_SNP [dm3] 3R_14940621_SNP [dm6]	T	A	3.652e^-4	0.957	INTERGENIC
2L	7057137	2L_7057137_SNP [dm3] 2L_7057137_SNP [dm6]	C	A	3.653e^-4	0.957	UTR_5_PRIME Mnn1 INTRON Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	15935551	2R_15935551_SNP [dm3] 2R_20048046_SNP [dm6]	G	A	3.669e^-4	0.957	INTERGENIC
3R	10766341	3R_10766341_SNP [dm3] 3R_14940619_SNP [dm6]	T	A	3.678e^-4	0.957	INTERGENIC
X	18973528	X_18973528_SNP [dm3] X_19079495_SNP [dm6]	C	T	3.679e^-4	0.957	DOWNSTREAM CG7406 INTERGENIC
3R	10537813	3R_10537813_SNP [dm3] 3R_14712091_SNP [dm6]	C	T	3.679e^-4	0.957	INTRON kibra	TF binding site mE1_TFBS_zfh1
X	8397369	X_8397369_SNP [dm3] X_8503336_SNP [dm6]	G	A	3.681e^-4	0.957	INTRON CG33181
X	16428938	X_16428938_SNP [dm3] X_16534905_SNP [dm6]	T	A	3.682e^-4	0.957	INTERGENIC
2R	6997209	2R_6997209_SNP [dm3] 2R_11109704_SNP [dm6]	A	G	3.701e^-4	0.957	INTRON luna
2R	11136093	2R_11136093_SNP [dm3] 2R_15248588_SNP [dm6]	T	C	3.715e^-4	0.957	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	4843092	2L_4843092_SNP [dm3] 2L_4843092_SNP [dm6]	T	C	3.718e^-4	0.957	NON_SYNONYMOUS_CODING mxt INTRON mxt
3L	8163746	3L_8163746_SNP [dm3] 3L_8170646_SNP [dm6]	T	C	3.726e^-4	0.957	UTR_3_PRIME RecQ4	TF binding site mE1_TFBS_cnc
3R	14438699	3R_14438699_SNP [dm3] 3R_18612977_SNP [dm6]	A	T	3.734e^-4	0.957	INTRON qin & 1 other
2L	6784028	2L_6784028_SNP [dm3] 2L_6784028_SNP [dm6]	T	A	3.738e^-4	0.957	INTRON nrv1
3L	17238129	3L_17238129_SNP [dm3] 3L_17245029_SNP [dm6]	C	T	3.746e^-4	0.957	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC
3L	7869222	3L_7869222_SNP [dm3] 3L_7876122_SNP [dm6]	A	C	3.749e^-4	0.957	INTRON CG32365
2L	18231802	2L_18231802_SNP [dm3] 2L_18231802_SNP [dm6]	G	A	3.752e^-4	0.957	INTRON CG42750
2L	9836774	2L_9836774_DEL [dm3] 2L_9836774_DEL [dm6]	TGGCGT	T	3.761e^-4	0.957	INTRON nAChRalpha6
2R	2130472	2R_2130472_SNP [dm3] 2R_6242967_SNP [dm6]	G	T	3.767e^-4	0.957	INTRON Pld
3L	7634942	3L_7634942_SNP [dm3] 3L_7641842_SNP [dm6]	C	G	3.767e^-4	0.957	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	16171184	3R_16171184_SNP [dm3] 3R_20345462_SNP [dm6]	T	G	3.770e^-4	0.957	INTERGENIC
3R	5043771	3R_5043771_SNP [dm3] 3R_9218049_SNP [dm6]	T	C	3.776e^-4	0.957	SYNONYMOUS_CODING pum	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5459601	2L_5459601_SNP [dm3] 2L_5459601_SNP [dm6]	T	C	3.779e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22838418	3L_22838418_SNP [dm3] 3L_22845318_SNP [dm6]	C	T	3.780e^-4	0.957	INTERGENIC
2L	11613436	2L_11613436_SNP [dm3] 2L_11613436_SNP [dm6]	A	G	3.784e^-4	0.957	INTRON kek2
3L	18844971	3L_18844971_SNP [dm3] 3L_18851871_SNP [dm6]	C	T	3.793e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16953125	2R_16953125_SNP [dm3] 2R_21065620_SNP [dm6]	C	T	3.796e^-4	0.957	SYNONYMOUS_CODING Cht4 UPSTREAM Cht12	TF binding site mE1_TFBS_cad
2L	4980131	2L_4980131_SNP [dm3] 2L_4980131_SNP [dm6]	C	T	3.808e^-4	0.957	SYNONYMOUS_CODING CG8892 UPSTREAM CG8891	TF binding site mE1_TFBS_chinmo
2L	3671021	2L_3671021_SNP [dm3] 2L_3671021_SNP [dm6]	T	A	3.811e^-4	0.957	UPSTREAM Sfp24Bc INTRON CG34340
2R	15935560	2R_15935560_SNP [dm3] 2R_20048055_SNP [dm6]	G	A	3.812e^-4	0.957	INTERGENIC
3R	2841407	3R_2841407_SNP [dm3] 3R_7015685_SNP [dm6]	G	T	3.814e^-4	0.957	INTERGENIC
2L	10722428	2L_10722428_SNP [dm3] 2L_10722428_SNP [dm6]	C	T	3.821e^-4	0.957	INTERGENIC
3R	16179084	3R_16179084_SNP [dm3] 3R_20353362_SNP [dm6]	G	A	3.824e^-4	0.957	INTERGENIC
2L	12535601	2L_12535601_SNP [dm3] 2L_12535601_SNP [dm6]	T	A	3.832e^-4	0.957	INTRON bun
2R	6995667	2R_6995667_SNP [dm3] 2R_11108162_SNP [dm6]	T	C	3.835e^-4	0.957	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15687364	2R_15687364_SNP [dm3] 2R_19799859_SNP [dm6]	G	T	3.838e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12573971	2R_12573971_SNP [dm3] 2R_16686466_SNP [dm6]	C	T	3.842e^-4	0.957	INTRON CG30463
2R	18616478	2R_18616478_SNP [dm3] 2R_22728973_SNP [dm6]	G	A	3.853e^-4	0.957	INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16915102	X_16915102_SNP [dm3] X_17021069_SNP [dm6]	T	A	3.855e^-4	0.957	INTRON CG45002
3R	18322595	3R_18322595_SNP [dm3] 3R_22496873_SNP [dm6]	G	T	3.856e^-4	0.957	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
3R	16957269	3R_16957269_SNP [dm3] 3R_21131547_SNP [dm6]	G	C	3.860e^-4	0.957	SYNONYMOUS_CODING Ice2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3575185	2L_3575185_SNP [dm3] 2L_3575185_SNP [dm6]	G	C	3.869e^-4	0.957	UPSTREAM CR43822 INTERGENIC
3L	9736539	3L_9736539_SNP [dm3] 3L_9743439_SNP [dm6]	G	T	3.870e^-4	0.957	INTRON CG42268 & 1 other
3R	12453431	3R_12453431_SNP [dm3] 3R_16627709_SNP [dm6]	G	C	3.870e^-4	0.957	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16748679	3L_16748679_SNP [dm3] 3L_16755579_SNP [dm6]	T	C	3.870e^-4	0.957	INTRON CG42852
3L	2670245	3L_2670245_INS [dm3] 3L_2670245_INS [dm6]	A	AA	3.872e^-4	0.957	DOWNSTREAM Fife INTRON Fife
3L	2695471	3L_2695471_SNP [dm3] 3L_2695471_SNP [dm6]	A	T	3.873e^-4	0.957	INTRON Fife
X	10345269	X_10345269_SNP [dm3] X_10451236_SNP [dm6]	C	A	3.879e^-4	0.957	INTRON CG32683
3R	5865368	3R_5865368_SNP [dm3] 3R_10039646_SNP [dm6]	A	T	3.884e^-4	0.957	INTRON Mical
3L	9628850	3L_9628850_SNP [dm3] 3L_9635750_SNP [dm6]	C	T	3.894e^-4	0.957	SYNONYMOUS_CODING fry
3R	7131977	3R_7131977_MNP [dm3] 3R_11306255_MNP [dm6]	GGGT	ACCC	3.894e^-4	0.957	UPSTREAM CR31386 INTERGENIC
2R	12385318	2R_12385318_SNP [dm3] 2R_16497813_SNP [dm6]	C	A	3.900e^-4	0.957	SYNONYMOUS_CODING CG7813	TF binding site mE1_TFBS_sens
3L	7141815	3L_7141815_SNP [dm3] 3L_7148715_SNP [dm6]	G	T	3.917e^-4	0.957	INTRON corn	TF binding site mE1_TFBS_cad
2L	4353700	2L_4353700_SNP [dm3] 2L_4353700_SNP [dm6]	A	G	3.927e^-4	0.957	NON_SYNONYMOUS_CODING CG15429	TF binding site BDTNP1_TFBS_prd
2R	15765552	2R_15765552_SNP [dm3] 2R_19878047_SNP [dm6]	C	A	3.937e^-4	0.957	DOWNSTREAM CG13872 INTERGENIC
X	13060718	X_13060718_SNP [dm3] X_13166685_SNP [dm6]	T	A	3.938e^-4	0.957	INTRON CG34411
X	19859323	X_19859323_SNP [dm3] X_19965290_SNP [dm6]	T	C	3.940e^-4	0.957	SYNONYMOUS_CODING Nep3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14332934	X_14332934_SNP [dm3] X_14438901_SNP [dm6]	T	A	3.944e^-4	0.957	INTRON dpr8
2L	3693077	2L_3693077_SNP [dm3] 2L_3693077_SNP [dm6]	T	G	3.948e^-4	0.957	UPSTREAM CG16704 DOWNSTREAM CG34340 & 1 other INTRON CG3513
2R	6706045	2R_6706045_SNP [dm3] 2R_10818540_SNP [dm6]	A	C	3.968e^-4	0.957	INTRON dgo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7415183	2L_7415183_SNP [dm3] 2L_7415183_SNP [dm6]	G	T	3.971e^-4	0.957	INTRON chm
3R	12025882	3R_12025882_SNP [dm3] 3R_16200160_SNP [dm6]	A	G	3.972e^-4	0.957	INTRON CG6126
2L	3575165	2L_3575165_SNP [dm3] 2L_3575165_SNP [dm6]	G	T	3.978e^-4	0.957	UPSTREAM CR43822 INTERGENIC
2R	13302867	2R_13302867_SNP [dm3] 2R_17415362_SNP [dm6]	G	T	3.980e^-4	0.957	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo
3R	23979989	3R_23979989_SNP [dm3] 3R_28154267_SNP [dm6]	A	C	3.982e^-4	0.957	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	402662	2L_402662_SNP [dm3] 2L_402662_SNP [dm6]	A	G	3.983e^-4	0.957	UPSTREAM CG4213 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	4964804	3R_4964804_SNP [dm3] 3R_9139082_SNP [dm6]	T	A	4.003e^-4	0.957	INTRON pum
X	16995038	X_16995038_SNP [dm3] X_17101005_SNP [dm6]	T	A	4.009e^-4	0.957	UPSTREAM CG4991 INTRON CG4991
2L	4817093	2L_4817093_SNP [dm3] 2L_4817093_SNP [dm6]	G	A	4.013e^-4	0.957	SYNONYMOUS_CODING CG3225 DOWNSTREAM mir-4910	TF binding site mE1_TFBS_sens
3R	4143788	3R_4143788_SNP [dm3] 3R_8318066_SNP [dm6]	T	A	4.015e^-4	0.957	DOWNSTREAM CR45215 & 1 other INTRON Ctr1B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14686904	2L_14686904_SNP [dm3] 2L_14686904_SNP [dm6]	T	A	4.016e^-4	0.957	INTRON osp
3L	3966585	3L_3966585_SNP [dm3] 3L_3966585_SNP [dm6]	G	A	4.020e^-4	0.957	INTERGENIC
3L	965044	3L_965044_SNP [dm3] 3L_965044_SNP [dm6]	G	T	4.026e^-4	0.957	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15662574	X_15662574_SNP [dm3] X_15768541_SNP [dm6]	G	A	4.030e^-4	0.957	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_cad
2L	3211460	2L_3211460_INS [dm3] 2L_3211460_INS [dm6]	C	CAGACTTTTTCCTATA...	4.034e^-4	0.957	DOWNSTREAM CR45336 INTERGENIC
2R	12085913	2R_12085913_SNP [dm3] 2R_16198408_SNP [dm6]	T	C	4.036e^-4	0.957	INTRON CG42837 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16562310	2R_16562310_SNP [dm3] 2R_20674805_SNP [dm6]	C	T	4.036e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14783974	2R_14783974_SNP [dm3] 2R_18896469_SNP [dm6]	G	A	4.045e^-4	0.957	INTRON sano
2R	19796573	2R_19796573_SNP [dm3] 2R_23909050_SNP [dm6]	C	A	4.049e^-4	0.957	UPSTREAM CR44806 INTRON kcc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	15747621	3L_15747621_SNP [dm3] 3L_15754521_SNP [dm6]	C	T	4.051e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7077164	3R_7077164_SNP [dm3] 3R_11251442_SNP [dm6]	T	A	4.054e^-4	0.957	INTRON CR43283 EXON CR43283
2R	3523701	2R_3523701_SNP [dm3] 2R_7636196_SNP [dm6]	C	T	4.057e^-4	0.957	UPSTREAM CR45131 & 1 other INTRON CG43340
3R	25063368	3R_25063368_SNP [dm3] 3R_29237646_SNP [dm6]	A	G	4.062e^-4	0.957	INTRON CG11951	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18322596	3R_18322596_SNP [dm3] 3R_22496874_SNP [dm6]	A	T	4.064e^-4	0.957	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
3R	16171190	3R_16171190_SNP [dm3] 3R_20345468_SNP [dm6]	T	C	4.064e^-4	0.957	INTERGENIC
2L	4689963	2L_4689963_SNP [dm3] 2L_4689963_SNP [dm6]	T	A	4.066e^-4	0.957	NON_SYNONYMOUS_CODING CG3251	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3817651	3R_3817651_INS [dm3] 3R_7991929_INS [dm6]	G	GTTG	4.068e^-4	0.957	INTRON CG2781
2R	3529891	2R_3529891_SNP [dm3] 2R_7642386_SNP [dm6]	T	A	4.075e^-4	0.957	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14829329	3R_14829329_SNP [dm3] 3R_19003607_SNP [dm6]	T	C	4.082e^-4	0.957	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22651831	2L_22651831_SNP [dm3] 2L_22759099_SNP [dm6]	A	G	4.083e^-4	0.957	INTERGENIC
X	15855568	X_15855568_SNP [dm3] X_15961535_SNP [dm6]	A	T	4.091e^-4	0.957	INTRON mmd
3R	19736755	3R_19736755_SNP [dm3] 3R_23911033_SNP [dm6]	A	G	4.092e^-4	0.957	INTRON sba
2L	6253589	2L_6253589_INS [dm3] 2L_6253589_INS [dm6]	C	CGC	4.097e^-4	0.957	INTRON Ddr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17619026	2R_17619026_SNP [dm3] 2R_21731521_SNP [dm6]	T	C	4.097e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6131505	X_6131505_SNP [dm3] X_6237472_SNP [dm6]	C	T	4.108e^-4	0.957	UTR_5_PRIME CG14445
2L	4179438	2L_4179438_DEL [dm3] 2L_4179438_DEL [dm6]	TCAGAAATCTAT...	T	4.110e^-4	0.957	INTERGENIC
3L	8056717	3L_8056717_SNP [dm3] 3L_8063617_SNP [dm6]	A	C	4.128e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
X	15662553	X_15662553_SNP [dm3] X_15768520_SNP [dm6]	T	A	4.140e^-4	0.957	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_cad
2L	1686541	2L_1686541_INS [dm3] 2L_1686541_INS [dm6]	T	TT	4.142e^-4	0.957	INTRON chinmo
2L	10979319	2L_10979319_SNP [dm3] 2L_10979319_SNP [dm6]	A	C	4.147e^-4	0.957	INTRON SCAR
3R	20499904	3R_20499904_SNP [dm3] 3R_24674182_SNP [dm6]	G	A	4.150e^-4	0.957	INTRON slo
2L	2266719	2L_2266719_SNP [dm3] 2L_2266719_SNP [dm6]	T	G	4.153e^-4	0.957	INTERGENIC
3R	7349159	3R_7349159_SNP [dm3] 3R_11523437_SNP [dm6]	A	C	4.156e^-4	0.957	INTERGENIC
3L	14646596	3L_14646596_SNP [dm3] 3L_14653496_SNP [dm6]	T	A	4.160e^-4	0.957	INTRON dlp
3R	10766322	3R_10766322_SNP [dm3] 3R_14940600_SNP [dm6]	A	T	4.182e^-4	0.957	INTERGENIC
3R	10766323	3R_10766323_DEL [dm3] 3R_14940601_DEL [dm6]	AG	A	4.182e^-4	0.957	INTERGENIC
X	4641489	X_4641489_INS [dm3] X_4747456_INS [dm6]	G	GG	4.186e^-4	0.957	INTERGENIC
3L	9736541	3L_9736541_SNP [dm3] 3L_9743441_SNP [dm6]	A	T	4.188e^-4	0.957	INTRON CG42268 & 1 other
3L	9579123	3L_9579123_SNP [dm3] 3L_9586023_SNP [dm6]	G	A	4.193e^-4	0.957	INTRON CG42673
3L	9579125	3L_9579125_SNP [dm3] 3L_9586025_SNP [dm6]	G	A	4.193e^-4	0.957	INTRON CG42673
2R	9638457	2R_9638457_SNP [dm3] 2R_13750952_SNP [dm6]	G	T	4.198e^-4	0.957	INTERGENIC
3R	3851763	3R_3851763_SNP [dm3] 3R_8026041_SNP [dm6]	A	G	4.199e^-4	0.957	INTRON CG2747
2L	1371279	2L_1371279_SNP [dm3] 2L_1371279_SNP [dm6]	A	T	4.217e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	23680932	3R_23680932_SNP [dm3] 3R_27855210_SNP [dm6]	C	T	4.217e^-4	0.957	INTRON CG34353
3L	12376479	3L_12376479_SNP [dm3] 3L_12383379_SNP [dm6]	G	A	4.221e^-4	0.957	INTRON Ncc69
2R	15751361	2R_15751361_SNP [dm3] 2R_19863856_SNP [dm6]	T	G	4.222e^-4	0.957	UPSTREAM Obp56i INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4459875	X_4459875_INS [dm3] X_4565842_INS [dm6]	G	GG	4.234e^-4	0.957	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16239277	3R_16239277_SNP [dm3] 3R_20413555_SNP [dm6]	G	A	4.241e^-4	0.957	INTRON Gfrl
3R	16026191	3R_16026191_SNP [dm3] 3R_20200469_SNP [dm6]	A	G	4.248e^-4	0.957	INTERGENIC
2R	20968702	2R_20968702_SNP [dm3] 2R_25081179_SNP [dm6]	T	G	4.251e^-4	0.957	INTRON gol	regulatory region REDfly_CRMs
3R	17992833	3R_17992833_SNP [dm3] 3R_22167111_SNP [dm6]	T	C	4.262e^-4	0.957	INTRON SKIP	TF binding site mE1_TFBS_Kr
3L	10636956	3L_10636956_SNP [dm3] 3L_10643856_SNP [dm6]	A	T	4.265e^-4	0.957	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
X	1290652	X_1290652_INS [dm3] X_1396619_INS [dm6]	C	CG	4.290e^-4	0.957	UTR_3_PRIME CG11448
3L	13231487	3L_13231487_SNP [dm3] 3L_13238387_SNP [dm6]	A	C	4.307e^-4	0.957	INTRON caps
2R	16494195	2R_16494195_SNP [dm3] 2R_20606690_SNP [dm6]	A	T	4.309e^-4	0.957	UTR_3_PRIME bl DOWNSTREAM Hil & 2 others
2L	3138563	2L_3138563_SNP [dm3] 2L_3138563_SNP [dm6]	T	G	4.337e^-4	0.957	INTRON toc
3L	13861782	3L_13861782_SNP [dm3] 3L_13868682_SNP [dm6]	T	G	4.337e^-4	0.957	UTR_3_PRIME dysc
3L	7626944	3L_7626944_SNP [dm3] 3L_7633844_SNP [dm6]	C	T	4.345e^-4	0.957	INTRON CG33275
3R	4008100	3R_4008100_SNP [dm3] 3R_8182378_SNP [dm6]	A	G	4.354e^-4	0.957	UPSTREAM grn INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	888990	X_888990_SNP [dm3] X_994957_SNP [dm6]	T	A	4.354e^-4	0.957	INTERGENIC
2L	15244672	2L_15244672_SNP [dm3] 2L_15244672_SNP [dm6]	G	A	4.355e^-4	0.957	INTRON ZnT35C
3R	16170082	3R_16170082_SNP [dm3] 3R_20344360_SNP [dm6]	A	C	4.355e^-4	0.957	DOWNSTREAM Ir92a INTERGENIC
X	1089214	X_1089214_SNP [dm3] X_1195181_SNP [dm6]	C	T	4.364e^-4	0.957	NON_SYNONYMOUS_CODING CG11380	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19458626	2R_19458626_SNP [dm3] 2R_23571103_SNP [dm6]	G	A	4.372e^-4	0.957	INTRON apt	TF binding site BDTNP1_TFBS_dl
3R	27453595	3R_27453595_SNP [dm3] 3R_31627873_SNP [dm6]	T	C	4.376e^-4	0.957	INTRON kek6
3R	10136782	3R_10136782_SNP [dm3] 3R_14311060_SNP [dm6]	T	C	4.395e^-4	0.957	DOWNSTREAM RpII15 INTRON CG31321
3L	10556560	3L_10556560_SNP [dm3] 3L_10563460_SNP [dm6]	C	A	4.406e^-4	0.957	INTRON A2bp1
3L	8573419	3L_8573419_DEL [dm3] 3L_8580319_DEL [dm6]	TG	T	4.409e^-4	0.957	INTRON CG43078
X	1086172	X_1086172_SNP [dm3] X_1192139_SNP [dm6]	C	A	4.421e^-4	0.957	INTRON CG11380
X	1095865	X_1095865_SNP [dm3] X_1201832_SNP [dm6]	G	T	4.421e^-4	0.957	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_chinmo
3R	14837790	3R_14837790_SNP [dm3] 3R_19012068_SNP [dm6]	T	A	4.428e^-4	0.957	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
2L	8355372	2L_8355372_SNP [dm3] 2L_8355372_SNP [dm6]	G	A	4.432e^-4	0.957	DOWNSTREAM CG7627 & 1 other INTERGENIC
2L	9640832	2L_9640832_SNP [dm3] 2L_9640832_SNP [dm6]	A	T	4.442e^-4	0.957	INTRON Apoltp
3R	24972631	3R_24972631_SNP [dm3] 3R_29146909_SNP [dm6]	A	G	4.445e^-4	0.957	UPSTREAM CG14511 DOWNSTREAM CG11882 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19411574	2R_19411574_SNP [dm3] 2R_23524051_SNP [dm6]	T	C	4.445e^-4	0.957	UTR_5_PRIME mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	21043559	X_21043559_SNP [dm3] X_21172532_SNP [dm6]	A	T	4.459e^-4	0.957	INTERGENIC	transposable element FlyBase
3L	8607581	3L_8607581_SNP [dm3] 3L_8614481_SNP [dm6]	G	A	4.462e^-4	0.957	INTRON CG6282
3L	9744947	3L_9744947_SNP [dm3] 3L_9751847_SNP [dm6]	T	C	4.465e^-4	0.957	UPSTREAM CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	14412101	2R_14412101_SNP [dm3] 2R_18524596_SNP [dm6]	A	T	4.468e^-4	0.957	UTR_3_PRIME CG43066
3R	19336627	3R_19336627_SNP [dm3] 3R_23510905_SNP [dm6]	A	G	4.472e^-4	0.957	INTERGENIC
2R	13073075	2R_13073075_SNP [dm3] 2R_17185570_SNP [dm6]	A	G	4.473e^-4	0.957	EXON CR44387
X	17628556	X_17628556_SNP [dm3] X_17734523_SNP [dm6]	G	T	4.474e^-4	0.957	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
3R	5863117	3R_5863117_SNP [dm3] 3R_10037395_SNP [dm6]	G	A	4.475e^-4	0.957	INTRON Mical
3R	16307995	3R_16307995_SNP [dm3] 3R_20482273_SNP [dm6]	A	G	4.485e^-4	0.957	INTRON Gfrl
X	8367510	X_8367510_SNP [dm3] X_8473477_SNP [dm6]	A	C	4.488e^-4	0.957	UPSTREAM Cp7Fb DOWNSTREAM Cp7Fa INTRON CG33223
X	3923947	X_3923947_SNP [dm3] X_4029914_SNP [dm6]	T	A	4.501e^-4	0.957	INTERGENIC
3R	10636782	3R_10636782_SNP [dm3] 3R_14811060_SNP [dm6]	G	A	4.507e^-4	0.957	INTRON btsz
2L	10722730	2L_10722730_DEL [dm3] 2L_10722730_DEL [dm6]	GGA	T	4.507e^-4	0.957	INTERGENIC
X	19424730	X_19424730_SNP [dm3] X_19530697_SNP [dm6]	C	T	4.515e^-4	0.957	UTR_3_PRIME CoRest DOWNSTREAM CoRest & 1 other
3L	10595209	3L_10595209_SNP [dm3] 3L_10602109_SNP [dm6]	C	A	4.523e^-4	0.957	INTERGENIC
3R	4094460	3R_4094460_SNP [dm3] 3R_8268738_SNP [dm6]	C	T	4.536e^-4	0.957	NON_SYNONYMOUS_CODING CG9630 DOWNSTREAM Mcm2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	10691359	2L_10691359_DEL [dm3] 2L_10691359_DEL [dm6]	TGC	T	4.551e^-4	0.957	INTERGENIC
3R	16935783	3R_16935783_SNP [dm3] 3R_21110061_SNP [dm6]	A	C	4.553e^-4	0.957	SYNONYMOUS_CODING rtet	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	827311	3R_827311_SNP [dm3] 3R_5001589_SNP [dm6]	T	A	4.559e^-4	0.957	INTRON CG2022
2R	19138541	2R_19138541_SNP [dm3] 2R_23251018_SNP [dm6]	G	A	4.559e^-4	0.957	INTERGENIC
2R	5391207	2R_5391207_SNP [dm3] 2R_9503702_SNP [dm6]	G	A	4.563e^-4	0.957	UPSTREAM brp DOWNSTREAM Wnt2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20778458	3R_20778458_SNP [dm3] 3R_24952736_SNP [dm6]	G	T	4.570e^-4	0.957	INTERGENIC
3R	16170207	3R_16170207_SNP [dm3] 3R_20344485_SNP [dm6]	T	C	4.575e^-4	0.957	DOWNSTREAM Ir92a INTERGENIC
2L	3496349	2L_3496349_SNP [dm3] 2L_3496349_SNP [dm6]	A	G	4.575e^-4	0.957	INTRON tim
2L	7108176	2L_7108176_SNP [dm3] 2L_7108176_SNP [dm6]	A	T	4.576e^-4	0.957	INTRON Pvf3
X	16429001	X_16429001_SNP [dm3] X_16534968_SNP [dm6]	A	C	4.584e^-4	0.957	INTERGENIC
2L	5331698	2L_5331698_INS [dm3] 2L_5331698_INS [dm6]	A	ATA	4.587e^-4	0.957	INTRON fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13159399	X_13159399_SNP [dm3] X_13265366_SNP [dm6]	G	A	4.591e^-4	0.957	SYNONYMOUS_CODING HDAC4
3R	25106559	3R_25106559_SNP [dm3] 3R_29280837_SNP [dm6]	T	C	4.591e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs
3L	9736523	3L_9736523_DEL [dm3] 3L_9743423_DEL [dm6]	AGG	A	4.594e^-4	0.957	INTRON CG42268 & 1 other
3L	9736527	3L_9736527_SNP [dm3] 3L_9743427_SNP [dm6]	G	A	4.594e^-4	0.957	INTRON CG42268 & 1 other
3L	9736529	3L_9736529_SNP [dm3] 3L_9743429_SNP [dm6]	C	T	4.594e^-4	0.957	INTRON CG42268 & 1 other
3L	9736536	3L_9736536_INS [dm3] 3L_9743436_INS [dm6]	G	TA	4.594e^-4	0.957	INTRON CG42268 & 1 other
X	8503754	X_8503754_SNP [dm3] X_8609721_SNP [dm6]	A	G	4.595e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3575193	2L_3575193_SNP [dm3] 2L_3575193_SNP [dm6]	G	A	4.599e^-4	0.957	UPSTREAM CR43822 INTERGENIC
X	1093849	X_1093849_DEL [dm3] X_1199816_DEL [dm6]	AA	A	4.610e^-4	0.957	INTRON CG14625
3R	18333562	3R_18333562_DEL [dm3] 3R_22507840_DEL [dm6]	GGACCCATCCACTTATTCAT...	G	4.610e^-4	0.957	INTRON Octbeta1R
2R	6744353	2R_6744353_SNP [dm3] 2R_10856848_SNP [dm6]	A	G	4.615e^-4	0.957	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	12693521	3R_12693521_SNP [dm3] 3R_16867799_SNP [dm6]	G	A	4.627e^-4	0.957	INTRON iab-8
X	17975077	X_17975077_SNP [dm3] X_18081044_SNP [dm6]	G	A	4.632e^-4	0.957	SYNONYMOUS_CODING CG7536
2L	16598967	2L_16598967_SNP [dm3] 2L_16598967_SNP [dm6]	T	C	4.637e^-4	0.957	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2335534	2L_2335534_SNP [dm3] 2L_2335534_SNP [dm6]	A	G	4.644e^-4	0.957	INTRON CG9967 & 1 other
X	10856368	X_10856368_SNP [dm3] X_10962335_SNP [dm6]	C	T	4.656e^-4	0.957	SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23674389	3R_23674389_SNP [dm3] 3R_27848667_SNP [dm6]	G	A	4.657e^-4	0.957	INTRON CG34353
3R	14837660	3R_14837660_SNP [dm3] 3R_19011938_SNP [dm6]	T	A	4.661e^-4	0.957	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	10319454	3L_10319454_SNP [dm3] 3L_10326354_SNP [dm6]	T	G	4.665e^-4	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3L	9258637	3L_9258637_SNP [dm3] 3L_9265537_SNP [dm6]	A	C	4.666e^-4	0.957	INTRON GluRIB
2L	9939813	2L_9939813_SNP [dm3] 2L_9939813_SNP [dm6]	G	A	4.671e^-4	0.957	NON_SYNONYMOUS_CODING CG4619 DOWNSTREAM CR45007 & 1 other	TF binding site mE1_TFBS_sens
3R	9918986	3R_9918986_SNP [dm3] 3R_14093264_SNP [dm6]	G	C	4.691e^-4	0.957	DOWNSTREAM Npc2b INTRON CCHa1
2R	2810655	2R_2810655_SNP [dm3] 2R_6923150_SNP [dm6]	C	G	4.696e^-4	0.957	UPSTREAM CG3358 DOWNSTREAM CG30158 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14838129	3R_14838129_SNP [dm3] 3R_19012407_SNP [dm6]	T	C	4.698e^-4	0.957	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3722272	2L_3722272_SNP [dm3] 2L_3722272_SNP [dm6]	C	T	4.703e^-4	0.957	INTRON Shaw
2L	11231700	2L_11231700_SNP [dm3] 2L_11231700_SNP [dm6]	G	T	4.706e^-4	0.957	INTRON ab
X	17478130	X_17478130_SNP [dm3] X_17584097_SNP [dm6]	G	T	4.716e^-4	0.957	INTRON CG12991
3L	21760993	3L_21760993_SNP [dm3] 3L_21767893_SNP [dm6]	A	C	4.718e^-4	0.957	INTRON Syn1 & 1 other
3R	20220605	3R_20220605_SNP [dm3] 3R_24394883_SNP [dm6]	A	G	4.720e^-4	0.957	UTR_3_PRIME nAChRalpha1
3R	10636818	3R_10636818_SNP [dm3] 3R_14811096_SNP [dm6]	A	T	4.727e^-4	0.957	INTRON btsz
2R	10590170	2R_10590170_SNP [dm3] 2R_14702665_SNP [dm6]	C	T	4.733e^-4	0.957	INTRON mspo
3R	23673544	3R_23673544_SNP [dm3] 3R_27847822_SNP [dm6]	C	A	4.738e^-4	0.957	DOWNSTREAM Or98a INTRON CG34353
3L	23054398	3L_23054398_SNP [dm3] 3L_23061298_SNP [dm6]	G	T	4.744e^-4	0.957	INTERGENIC
3R	15569324	3R_15569324_SNP [dm3] 3R_19743602_SNP [dm6]	G	A	4.746e^-4	0.957	DOWNSTREAM CR43488 INTRON GluClalpha
2R	11136089	2R_11136089_SNP [dm3] 2R_15248584_SNP [dm6]	T	A	4.749e^-4	0.957	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	18238965	X_18238965_SNP [dm3] X_18344932_SNP [dm6]	G	A	4.753e^-4	0.957	INTRON CG6123
2L	3587548	2L_3587548_SNP [dm3] 2L_3587548_SNP [dm6]	A	T	4.757e^-4	0.957	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3L	8056769	3L_8056769_SNP [dm3] 3L_8063669_SNP [dm6]	A	C	4.763e^-4	0.957	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	22434004	3R_22434004_SNP [dm3] 3R_26608282_SNP [dm6]	C	T	4.770e^-4	0.957	EXON CR44951
3R	9982114	3R_9982114_SNP [dm3] 3R_14156392_SNP [dm6]	C	T	4.774e^-4	0.957	SYNONYMOUS_CODING CG31533	TF binding site mE1_TFBS_sens
3L	2763975	3L_2763975_INS [dm3] 3L_2763975_INS [dm6]	A	AACGCTTTA	4.777e^-4	0.957	INTRON Mrtf
X	1290637	X_1290637_DEL [dm3] X_1396604_DEL [dm6]	GACGCCCATGTAG...	G	4.780e^-4	0.957	UTR_3_PRIME CG11448
3R	3858336	3R_3858336_SNP [dm3] 3R_8032614_SNP [dm6]	G	A	4.782e^-4	0.957	SYNONYMOUS_CODING CG11035 UPSTREAM unc-45 DOWNSTREAM CG10903	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	3475483	X_3475483_SNP [dm3] X_3581450_SNP [dm6]	G	T	4.785e^-4	0.957	INTRON AstA-R1
2R	5076557	2R_5076557_SNP [dm3] 2R_9189052_SNP [dm6]	G	T	4.785e^-4	0.957	INTRON CG8026 & 1 other	TF binding site mE1_TFBS_sens
2L	9687822	2L_9687822_SNP [dm3] 2L_9687822_SNP [dm6]	A	T	4.787e^-4	0.957	INTRON Pka-C1
3R	5139855	3R_5139855_SNP [dm3] 3R_9314133_SNP [dm6]	T	A	4.794e^-4	0.957	INTRON CG8861
3L	9630393	3L_9630393_SNP [dm3] 3L_9637293_SNP [dm6]	G	A	4.797e^-4	0.957	SYNONYMOUS_CODING fry UPSTREAM CG8329	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12450345	3R_12450345_SNP [dm3] 3R_16624623_SNP [dm6]	T	G	4.800e^-4	0.957	UTR_5_PRIME CG14905 UPSTREAM Fas1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8573573	3L_8573573_SNP [dm3] 3L_8580473_SNP [dm6]	T	A	4.803e^-4	0.957	INTRON CG43078
3R	12965797	3R_12965797_SNP [dm3] 3R_17140075_SNP [dm6]	C	T	4.814e^-4	0.957	SYNONYMOUS_CODING CG5265
X	3910032	X_3910032_SNP [dm3] X_4015999_SNP [dm6]	A	G	4.818e^-4	0.957	INTERGENIC
3L	7634944	3L_7634944_SNP [dm3] 3L_7641844_SNP [dm6]	A	T	4.842e^-4	0.957	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	18322583	3R_18322583_DEL [dm3] 3R_22496861_DEL [dm6]	GCTTAAC	G	4.847e^-4	0.957	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
3R	10878103	3R_10878103_SNP [dm3] 3R_15052381_SNP [dm6]	A	G	4.847e^-4	0.957	INTERGENIC
3L	2763946	3L_2763946_SNP [dm3] 3L_2763946_SNP [dm6]	T	C	4.850e^-4	0.957	INTRON Mrtf
2R	12383668	2R_12383668_SNP [dm3] 2R_16496163_SNP [dm6]	C	A	4.850e^-4	0.957	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_inv
3R	18322601	3R_18322601_SNP [dm3] 3R_22496879_SNP [dm6]	G	T	4.852e^-4	0.957	UPSTREAM Octbeta1R INTERGENIC	TF binding site mE1_TFBS_inv
2R	13819248	2R_13819248_DEL [dm3] 2R_17931743_DEL [dm6]	CACACACAC	C	4.853e^-4	0.957	INTERGENIC
3R	14804931	3R_14804931_SNP [dm3] 3R_18979209_SNP [dm6]	T	C	4.861e^-4	0.957	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
3R	14613397	3R_14613397_SNP [dm3] 3R_18787675_SNP [dm6]	C	T	4.874e^-4	0.957	INTRON CG7720
3L	7061666	3L_7061666_SNP [dm3] 3L_7068566_SNP [dm6]	A	T	4.881e^-4	0.957	NON_SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
X	19487996	X_19487996_SNP [dm3] X_19593963_SNP [dm6]	G	T	4.882e^-4	0.957	SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3355258	3L_3355258_SNP [dm3] 3L_3355258_SNP [dm6]	G	A	4.887e^-4	0.957	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7397123	2L_7397123_SNP [dm3] 2L_7397123_SNP [dm6]	T	G	4.890e^-4	0.957	INTRON CG5160
2R	2944952	2R_2944952_SNP [dm3] 2R_7057447_SNP [dm6]	C	A	4.900e^-4	0.957	DOWNSTREAM Tsp42Eo & 1 other INTRON Tsp42Ep	TF binding site mE1_TFBS_chinmo
2R	5334976	2R_5334976_SNP [dm3] 2R_9447471_SNP [dm6]	T	C	4.902e^-4	0.957	INTRON Camta	TF binding site mE1_TFBS_HSA
3R	16312452	3R_16312452_SNP [dm3] 3R_20486730_SNP [dm6]	C	T	4.902e^-4	0.957	UPSTREAM CR44401 INTERGENIC
X	21005689	X_21005689_SNP [dm3] X_21134662_SNP [dm6]	T	C	4.904e^-4	0.957	SYNONYMOUS_CODING CG34120
3R	5042158	3R_5042158_SNP [dm3] 3R_9216436_SNP [dm6]	C	T	4.917e^-4	0.957	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14399611	3L_14399611_SNP [dm3] 3L_14406511_SNP [dm6]	A	T	4.917e^-4	0.957	NON_SYNONYMOUS_CODING stwl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14341829	X_14341829_SNP [dm3] X_14447796_SNP [dm6]	G	T	4.919e^-4	0.957	INTRON dpr8
3R	10694408	3R_10694408_SNP [dm3] 3R_14868686_SNP [dm6]	G	T	4.931e^-4	0.957	INTRON btsz
2L	2720617	2L_2720617_SNP [dm3] 2L_2720617_SNP [dm6]	G	A	4.937e^-4	0.957	INTERGENIC
2R	13076808	2R_13076808_SNP [dm3] 2R_17189303_SNP [dm6]	C	A	4.938e^-4	0.957	UPSTREAM CR45323 & 1 other INTERGENIC
2R	3936629	2R_3936629_SNP [dm3] 2R_8049124_SNP [dm6]	A	T	4.941e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8996258	3L_8996258_SNP [dm3] 3L_9003158_SNP [dm6]	T	C	4.948e^-4	0.957	DOWNSTREAM CG5087 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18692273	3R_18692273_SNP [dm3] 3R_22866551_SNP [dm6]	G	T	4.956e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22467459	3R_22467459_SNP [dm3] 3R_26641737_SNP [dm6]	G	A	4.957e^-4	0.957	DOWNSTREAM TwdlD INTERGENIC
X	19705252	X_19705252_SNP [dm3] X_19811219_SNP [dm6]	C	A	4.961e^-4	0.957	INTERGENIC
2R	10773257	2R_10773257_SNP [dm3] 2R_14885752_SNP [dm6]	A	G	4.969e^-4	0.957	INTRON Cyp6a21
3R	14731877	3R_14731877_SNP [dm3] 3R_18906155_SNP [dm6]	A	G	4.977e^-4	0.957	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14216600	2R_14216600_SNP [dm3] 2R_18329095_SNP [dm6]	C	T	5.002e^-4	0.957	INTRON sbb
2L	8355099	2L_8355099_SNP [dm3] 2L_8355099_SNP [dm6]	G	A	5.012e^-4	0.957	UTR_3_PRIME Mur29B DOWNSTREAM CG7627
3R	18574979	3R_18574979_SNP [dm3] 3R_22749257_SNP [dm6]	A	G	5.015e^-4	0.957	SYNONYMOUS_CODING rumi UPSTREAM CG31139
3R	18574982	3R_18574982_SNP [dm3] 3R_22749260_SNP [dm6]	C	T	5.015e^-4	0.957	SYNONYMOUS_CODING rumi UPSTREAM CG31139
3R	18574985	3R_18574985_SNP [dm3] 3R_22749263_SNP [dm6]	T	A	5.015e^-4	0.957	SYNONYMOUS_CODING rumi UPSTREAM CG31139
4	135744	4_135744_SNP [dm3] 4_115118_SNP [dm6]	G	T	5.021e^-4	0.957	UTR_3_PRIME Ank DOWNSTREAM pan	transposable element FlyBase
2R	13083931	2R_13083931_SNP [dm3] 2R_17196426_SNP [dm6]	G	C	5.023e^-4	0.957	NON_SYNONYMOUS_CODING CG10950
X	6185439	X_6185439_SNP [dm3] X_6291406_SNP [dm6]	A	G	5.027e^-4	0.957	START_GAINED CG15896 UTR_5_PRIME CG15896 UPSTREAM Rpt4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13076805	2R_13076805_SNP [dm3] 2R_17189300_SNP [dm6]	T	C	5.030e^-4	0.957	UPSTREAM CR45323 & 1 other INTERGENIC
3R	14998363	3R_14998363_SNP [dm3] 3R_19172641_SNP [dm6]	T	C	5.037e^-4	0.957	INTERGENIC
2R	3317531	2R_3317531_SNP [dm3] 2R_7430026_SNP [dm6]	G	C	5.045e^-4	0.957	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
3R	5057153	3R_5057153_SNP [dm3] 3R_9231431_SNP [dm6]	T	C	5.045e^-4	0.957	INTRON pum	TF binding site mE1_TFBS_Trl
3L	14383495	3L_14383495_SNP [dm3] 3L_14390395_SNP [dm6]	C	A	5.047e^-4	0.957	INTERGENIC
3L	7593666	3L_7593666_SNP [dm3] 3L_7600566_SNP [dm6]	A	G	5.050e^-4	0.957	INTRON CG33275
X	16909925	X_16909925_SNP [dm3] X_17015892_SNP [dm6]	C	G	5.051e^-4	0.957	INTRON CG45002
2L	4365434	2L_4365434_SNP [dm3] 2L_4365434_SNP [dm6]	C	T	5.053e^-4	0.957	INTRON Traf4	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	3722280	2L_3722280_SNP [dm3] 2L_3722280_SNP [dm6]	A	G	5.053e^-4	0.957	INTRON Shaw
3L	10542550	3L_10542550_SNP [dm3] 3L_10549450_SNP [dm6]	C	G	5.069e^-4	0.957	INTRON A2bp1
2R	11136842	2R_11136842_SNP [dm3] 2R_15249337_SNP [dm6]	C	T	5.071e^-4	0.957	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
3R	16816099	3R_16816099_SNP [dm3] 3R_20990377_SNP [dm6]	G	A	5.078e^-4	0.957	INTRON Calx
2L	2122535	2L_2122535_SNP [dm3] 2L_2122535_SNP [dm6]	G	A	5.093e^-4	0.957	INTERGENIC
3L	3455263	3L_3455263_SNP [dm3] 3L_3455263_SNP [dm6]	A	T	5.107e^-4	0.957	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9721734	3R_9721734_SNP [dm3] 3R_13896012_SNP [dm6]	A	C	5.109e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14837686	3R_14837686_SNP [dm3] 3R_19011964_SNP [dm6]	G	T	5.115e^-4	0.957	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2763944	3L_2763944_SNP [dm3] 3L_2763944_SNP [dm6]	G	A	5.119e^-4	0.957	INTRON Mrtf
X	7238050	X_7238050_SNP [dm3] X_7344017_SNP [dm6]	C	T	5.138e^-4	0.957	INTRON CR44357 & 1 other
3L	7861613	3L_7861613_SNP [dm3] 3L_7868513_SNP [dm6]	A	T	5.141e^-4	0.957	UPSTREAM CG32365 INTERGENIC
3R	14740409	3R_14740409_SNP [dm3] 3R_18914687_SNP [dm6]	T	C	5.149e^-4	0.957	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19081155	X_19081155_SNP [dm3] X_19187122_SNP [dm6]	G	A	5.154e^-4	0.957	UTR_3_PRIME CG33253 UPSTREAM Mec2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16604681	2L_16604681_SNP [dm3] 2L_16604681_SNP [dm6]	C	T	5.157e^-4	0.957	INTRON CG42389
3R	7349202	3R_7349202_SNP [dm3] 3R_11523480_SNP [dm6]	T	A	5.160e^-4	0.957	INTERGENIC
3R	16239222	3R_16239222_SNP [dm3] 3R_20413500_SNP [dm6]	A	C	5.166e^-4	0.957	INTRON Gfrl
3L	15871974	3L_15871974_SNP [dm3] 3L_15878874_SNP [dm6]	T	A	5.170e^-4	0.957	INTRON pHCl
2R	11480103	2R_11480103_SNP [dm3] 2R_15592598_SNP [dm6]	A	G	5.182e^-4	0.957	INTERGENIC
3R	18814448	3R_18814448_SNP [dm3] 3R_22988726_SNP [dm6]	C	T	5.190e^-4	0.957	UPSTREAM Or94b DOWNSTREAM Or94a INTRON Nha2
3L	14716735	3L_14716735_SNP [dm3] 3L_14723635_SNP [dm6]	G	A	5.191e^-4	0.957	INTRON ome
X	3797121	X_3797121_SNP [dm3] X_3903088_SNP [dm6]	A	G	5.195e^-4	0.957	INTRON CG42541
3L	9639840	3L_9639840_SNP [dm3] 3L_9646740_SNP [dm6]	C	T	5.201e^-4	0.957	INTRON fry & 1 other
X	12899426	X_12899426_DEL [dm3] X_13005393_DEL [dm6]	CA	C	5.208e^-4	0.957	UPSTREAM CG15719 INTRON rad
3R	24950706	3R_24950706_SNP [dm3] 3R_29124984_SNP [dm6]	A	G	5.209e^-4	0.957	INTRON CG11880
3L	15138822	3L_15138822_SNP [dm3] 3L_15145722_SNP [dm6]	G	C	5.232e^-4	0.957	NON_SYNONYMOUS_CODING Pex3
2R	3317532	2R_3317532_SNP [dm3] 2R_7430027_SNP [dm6]	G	C	5.233e^-4	0.957	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
2R	3634619	2R_3634619_INS [dm3] 2R_7747114_INS [dm6]	C	CACGCGCTCGAAATCAGAAA...	5.235e^-4	0.957	INTRON CG30497 & 1 other
3L	2763942	3L_2763942_SNP [dm3] 3L_2763942_SNP [dm6]	G	A	5.246e^-4	0.957	INTRON Mrtf
2L	8353200	2L_8353200_SNP [dm3] 2L_8353200_SNP [dm6]	T	C	5.250e^-4	0.957	INTRON Mur29B
X	12315332	X_12315332_SNP [dm3] X_12421299_SNP [dm6]	C	A	5.251e^-4	0.957	INTERGENIC
3R	15756666	3R_15756666_SNP [dm3] 3R_19930944_SNP [dm6]	A	T	5.251e^-4	0.957	DOWNSTREAM mira INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2669107	3L_2669107_DEL [dm3] 3L_2669107_DEL [dm6]	GG	G	5.255e^-4	0.957	INTRON Fife
3R	9466307	3R_9466307_SNP [dm3] 3R_13640585_SNP [dm6]	T	C	5.260e^-4	0.957	UTR_3_PRIME sqd INTRON sqd
3R	16314771	3R_16314771_SNP [dm3] 3R_20489049_SNP [dm6]	C	A	5.266e^-4	0.957	INTERGENIC
3L	11620845	3L_11620845_SNP [dm3] 3L_11627745_SNP [dm6]	A	T	5.279e^-4	0.957	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	14640364	3R_14640364_SNP [dm3] 3R_18814642_SNP [dm6]	T	G	5.285e^-4	0.957	INTRON CG18208
3L	10319392	3L_10319392_SNP [dm3] 3L_10326292_SNP [dm6]	G	A	5.289e^-4	0.957	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	15756395	3R_15756395_SNP [dm3] 3R_19930673_SNP [dm6]	T	G	5.299e^-4	0.957	INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15300412	X_15300412_SNP [dm3] X_15406379_SNP [dm6]	A	C	5.303e^-4	0.957	UTR_3_PRIME Cngl INTRON Cngl
2R	10656293	2R_10656293_SNP [dm3] 2R_14768788_SNP [dm6]	A	G	5.309e^-4	0.957	DOWNSTREAM CG42254 INTRON Spred	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15137554	3L_15137554_SNP [dm3] 3L_15144454_SNP [dm6]	A	C	5.322e^-4	0.957	UTR_5_PRIME Pex3 UPSTREAM CG32147 DOWNSTREAM CR45397	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

cv_BoutLength_Day phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results