DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.168e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2079 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	20745662	3R_20745662_SNP [dm3] 3R_24919940_SNP [dm6]	G	A	9.892e^-7	0.731	SYNONYMOUS_CODING CG11168
2R	11139121	2R_11139121_SNP [dm3] 2R_15251616_SNP [dm6]	A	G	1.619e^-6	0.731	INTRON scb
3L	10149387	3L_10149387_SNP [dm3] 3L_10156287_SNP [dm6]	C	A	2.057e^-6	0.731	INTRON dpr10
2R	16579447	2R_16579447_INS [dm3] 2R_20691942_INS [dm6]	T	TC	3.340e^-6	0.731	UPSTREAM CR44659 & 1 other INTERGENIC
X	1071203	X_1071203_INS [dm3] X_1177170_INS [dm6]	T	TCGTCCT	3.493e^-6	0.731	INTERGENIC
2L	16538453	2L_16538453_SNP [dm3] 2L_16538453_SNP [dm6]	G	A	3.539e^-6	0.731	INTERGENIC
2R	16578239	2R_16578239_SNP [dm3] 2R_20690734_SNP [dm6]	C	T	4.038e^-6	0.731	INTERGENIC
X	8292860	X_8292860_SNP [dm3] X_8398827_SNP [dm6]	A	T	4.270e^-6	0.731	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16010497	3R_16010497_SNP [dm3] 3R_20184775_SNP [dm6]	G	A	4.495e^-6	0.731	INTERGENIC
X	12161507	X_12161507_INS [dm3] X_12267474_INS [dm6]	G	GG	4.605e^-6	0.731	INTRON Ten-a
2L	16538418	2L_16538418_SNP [dm3] 2L_16538418_SNP [dm6]	T	C	4.728e^-6	0.731	INTERGENIC
3L	3017298	3L_3017298_SNP [dm3] 3L_3017298_SNP [dm6]	C	T	5.284e^-6	0.731	UPSTREAM CG32487 INTERGENIC
2L	16538494	2L_16538494_SNP [dm3] 2L_16538494_SNP [dm6]	T	C	5.534e^-6	0.731	INTERGENIC
2L	16538495	2L_16538495_SNP [dm3] 2L_16538495_SNP [dm6]	G	A	6.330e^-6	0.731	INTERGENIC
3R	14994299	3R_14994299_SNP [dm3] 3R_19168577_SNP [dm6]	G	T	6.810e^-6	0.731	SYNONYMOUS_CODING sqz	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16538503	2L_16538503_SNP [dm3] 2L_16538503_SNP [dm6]	A	G	7.490e^-6	0.731	INTERGENIC
2L	16538476	2L_16538476_INS [dm3] 2L_16538476_INS [dm6]	A	AATATTATAGATAGAGTCTT...	8.692e^-6	0.731	INTERGENIC
2L	8009667	2L_8009667_SNP [dm3] 2L_8009667_SNP [dm6]	A	G	9.077e^-6	0.731	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16010475	3R_16010475_SNP [dm3] 3R_20184753_SNP [dm6]	G	A	9.226e^-6	0.731	INTERGENIC
2L	16538506	2L_16538506_MNP [dm3] 2L_16538506_MNP [dm6]	CAC	AGT	9.558e^-6	0.731	INTERGENIC
3L	10149386	3L_10149386_SNP [dm3] 3L_10156286_SNP [dm6]	T	A	1.135e^-5	0.731	INTRON dpr10
2L	8009655	2L_8009655_SNP [dm3] 2L_8009655_SNP [dm6]	G	A	1.140e^-5	0.731	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16538510	2L_16538510_SNP [dm3] 2L_16538510_SNP [dm6]	C	T	1.182e^-5	0.731	INTERGENIC
X	12996625	X_12996625_SNP [dm3] X_13102592_SNP [dm6]	A	G	1.183e^-5	0.731	INTRON CG43313
2L	8009643	2L_8009643_SNP [dm3] 2L_8009643_SNP [dm6]	C	T	1.230e^-5	0.731	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19992934	2R_19992934_SNP [dm3] 2R_24105411_SNP [dm6]	C	T	1.238e^-5	0.731	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	441784	3L_441784_SNP [dm3] 3L_441784_SNP [dm6]	T	C	1.259e^-5	0.731	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl
3R	13497563	3R_13497563_SNP [dm3] 3R_17671841_SNP [dm6]	C	T	1.261e^-5	0.731	UPSTREAM CG7523 INTRON ald	TF binding site mE1_TFBS_sens
2L	8009631	2L_8009631_SNP [dm3] 2L_8009631_SNP [dm6]	A	G	1.331e^-5	0.731	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	7818023	2R_7818023_SNP [dm3] 2R_11930518_SNP [dm6]	A	G	1.337e^-5	0.731	UPSTREAM CR44312 INTERGENIC
3L	17382719	3L_17382719_SNP [dm3] 3L_17389619_SNP [dm6]	T	G	1.368e^-5	0.731	UPSTREAM CG13731 INTERGENIC
2L	16538488	2L_16538488_INS [dm3] 2L_16538488_INS [dm6]	T	TGA	1.382e^-5	0.731	INTERGENIC
3R	16382377	3R_16382377_SNP [dm3] 3R_20556655_SNP [dm6]	A	T	1.423e^-5	0.731	UTR_5_PRIME att-ORFA INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18727770	3R_18727770_SNP [dm3] 3R_22902048_SNP [dm6]	C	A	1.426e^-5	0.731	INTRON klg
3L	5909540	3L_5909540_SNP [dm3] 3L_5916440_SNP [dm6]	C	A	1.441e^-5	0.731	INTRON CG13288
2R	1078954	2R_1078954_SNP [dm3] 2R_5191449_SNP [dm6]	A	G	1.538e^-5	0.731	INTRON Nipped-A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
X	13026778	X_13026778_SNP [dm3] X_13132745_SNP [dm6]	A	G	1.548e^-5	0.731	INTRON MFS10 & 1 other	TF binding site mE1_TFBS_cad
2L	16538484	2L_16538484_INS [dm3] 2L_16538484_INS [dm6]	T	TTTTAATTGTTC...	1.553e^-5	0.731	INTERGENIC
2R	12478510	2R_12478510_SNP [dm3] 2R_16591005_SNP [dm6]	A	C	1.571e^-5	0.731	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
3L	10149398	3L_10149398_SNP [dm3] 3L_10156298_SNP [dm6]	G	T	1.596e^-5	0.731	INTRON dpr10
2R	16580512	2R_16580512_SNP [dm3] 2R_20693007_SNP [dm6]	A	G	1.659e^-5	0.731	DOWNSTREAM CR44659 INTRON CG13438
2L	974345	2L_974345_SNP [dm3] 2L_974345_SNP [dm6]	G	A	1.674e^-5	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	8009632	2L_8009632_SNP [dm3] 2L_8009632_SNP [dm6]	G	T	1.676e^-5	0.731	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	21444062	3R_21444062_SNP [dm3] 3R_25618340_SNP [dm6]	T	C	1.756e^-5	0.737	UPSTREAM CG5071 INTRON Npl4
2L	4806222	2L_4806222_SNP [dm3] 2L_4806222_SNP [dm6]	A	G	1.767e^-5	0.737	INTERGENIC
2L	16538420	2L_16538420_SNP [dm3] 2L_16538420_SNP [dm6]	C	G	1.852e^-5	0.741	INTERGENIC
2R	7818015	2R_7818015_SNP [dm3] 2R_11930510_SNP [dm6]	T	C	1.856e^-5	0.741	UPSTREAM CR44312 INTERGENIC
2L	16538487	2L_16538487_SNP [dm3] 2L_16538487_SNP [dm6]	A	C	1.924e^-5	0.752	INTERGENIC
2L	8742710	2L_8742710_SNP [dm3] 2L_8742710_SNP [dm6]	A	G	2.118e^-5	0.805	INTERGENIC
3R	14140463	3R_14140463_SNP [dm3] 3R_18314741_SNP [dm6]	T	C	2.146e^-5	0.805	UPSTREAM PKD INTERGENIC	TF binding site mE1_TFBS_Trl
2R	4092900	2R_4092900_SNP [dm3] 2R_8205395_SNP [dm6]	G	C	2.199e^-5	0.809	NON_SYNONYMOUS_CODING CG14756 INTRON LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16444566	2R_16444566_SNP [dm3] 2R_20557061_SNP [dm6]	T	C	2.295e^-5	0.828	NON_SYNONYMOUS_CODING lms	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10149353	3L_10149353_SNP [dm3] 3L_10156253_SNP [dm6]	C	T	2.388e^-5	0.845	INTRON dpr10
2L	9385429	2L_9385429_SNP [dm3] 2L_9385429_SNP [dm6]	T	C	2.474e^-5	0.859	INTRON Shawl
3L	12501434	3L_12501434_SNP [dm3] 3L_12508334_SNP [dm6]	T	C	2.532e^-5	0.863	UTR_3_PRIME sti UPSTREAM CG10654
2R	16904313	2R_16904313_SNP [dm3] 2R_21016808_SNP [dm6]	A	G	2.729e^-5	0.888	SYNONYMOUS_CODING CG3295 UPSTREAM RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25604258	3R_25604258_SNP [dm3] 3R_29778536_SNP [dm6]	C	T	2.831e^-5	0.888	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
3R	25604256	3R_25604256_SNP [dm3] 3R_29778534_SNP [dm6]	T	C	2.883e^-5	0.888	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2R	11137718	2R_11137718_SNP [dm3] 2R_15250213_SNP [dm6]	C	T	2.904e^-5	0.888	INTRON scb	TF binding site mE1_TFBS_cad
X	8292862	X_8292862_DEL [dm3] X_8398829_DEL [dm6]	TGTGCTTAATGAAGCATATA...	T	3.028e^-5	0.888	UPSTREAM CG10555 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8009637	2L_8009637_SNP [dm3] 2L_8009637_SNP [dm6]	C	G	3.058e^-5	0.888	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1870096	3L_1870096_SNP [dm3] 3L_1870096_SNP [dm6]	C	T	3.089e^-5	0.888	UPSTREAM CG13924 DOWNSTREAM CG12025 INTRON CG13924	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14725842	X_14725842_SNP [dm3] X_14831809_SNP [dm6]	G	T	3.196e^-5	0.888	UTR_5_PRIME CG14408 UPSTREAM CG14411	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3399496	2L_3399496_SNP [dm3] 2L_3399496_SNP [dm6]	T	G	3.342e^-5	0.888	DOWNSTREAM CG34175 INTERGENIC
3L	2635608	3L_2635608_SNP [dm3] 3L_2635608_SNP [dm6]	A	C	3.349e^-5	0.888	UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	19365097	3L_19365097_SNP [dm3] 3L_19371997_SNP [dm6]	C	T	3.370e^-5	0.888	INTRON CG32206	TF binding site mE1_TFBS_inv
X	9130379	X_9130379_SNP [dm3] X_9236346_SNP [dm6]	G	A	3.462e^-5	0.888	SYNONYMOUS_CODING Ir8a DOWNSTREAM mir-4916 & 1 other
3R	16382998	3R_16382998_SNP [dm3] 3R_20557276_SNP [dm6]	C	A	3.587e^-5	0.888	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	24513683	3R_24513683_SNP [dm3] 3R_28687961_SNP [dm6]	G	A	3.646e^-5	0.888	INTRON CG9990
3L	18257171	3L_18257171_SNP [dm3] 3L_18264071_SNP [dm6]	A	T	3.725e^-5	0.888	INTERGENIC
2L	3262861	2L_3262861_SNP [dm3] 2L_3262861_SNP [dm6]	T	C	3.758e^-5	0.888	UPSTREAM CR45338 INTERGENIC
3R	14059321	3R_14059321_SNP [dm3] 3R_18233599_SNP [dm6]	G	A	3.800e^-5	0.888	INTERGENIC	regulatory region REDfly_CRMs
3L	1443169	3L_1443169_SNP [dm3] 3L_1443169_SNP [dm6]	C	G	3.804e^-5	0.888	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	1443171	3L_1443171_SNP [dm3] 3L_1443171_SNP [dm6]	A	T	3.804e^-5	0.888	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7638089	3L_7638089_SNP [dm3] 3L_7644989_SNP [dm6]	A	G	3.842e^-5	0.888	INTERGENIC
3R	362463	3R_362463_SNP [dm3] 3R_4536741_SNP [dm6]	G	C	3.890e^-5	0.888	INTRON CG34357
3L	2635781	3L_2635781_INS [dm3] 3L_2635781_INS [dm6]	C	CG	3.912e^-5	0.888	UTR_5_PRIME MEP-1 UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10300276	3R_10300276_SNP [dm3] 3R_14474554_SNP [dm6]	T	G	4.032e^-5	0.888	INTRON cv-c	TF binding site mE1_TFBS_cad
3R	10293402	3R_10293402_INS [dm3] 3R_14467680_INS [dm6]	T	TTATTTTTTGGTTTTTTTTT...	4.113e^-5	0.888	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2980136	2R_2980136_SNP [dm3] 2R_7092631_SNP [dm6]	A	C	4.149e^-5	0.888	INTRON esn
X	1497195	X_1497195_SNP [dm3] X_1603162_SNP [dm6]	C	T	4.159e^-5	0.888	INTRON br & 1 other
3R	22734825	3R_22734825_SNP [dm3] 3R_26909103_SNP [dm6]	A	G	4.192e^-5	0.888	INTRON T48
2R	12638494	2R_12638494_SNP [dm3] 2R_16750989_SNP [dm6]	A	T	4.246e^-5	0.888	SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
X	1497192	X_1497192_INS [dm3] X_1603159_INS [dm6]	A	ACCCATGG	4.246e^-5	0.888	INTRON br & 1 other
3R	18673368	3R_18673368_SNP [dm3] 3R_22847646_SNP [dm6]	G	A	4.310e^-5	0.888	INTERGENIC
2L	2463169	2L_2463169_SNP [dm3] 2L_2463169_SNP [dm6]	T	C	4.331e^-5	0.888	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2R	16579076	2R_16579076_SNP [dm3] 2R_20691571_SNP [dm6]	C	A	4.438e^-5	0.888	UPSTREAM CR44659 INTERGENIC
2L	4391987	2L_4391987_SNP [dm3] 2L_4391987_SNP [dm6]	A	C	4.495e^-5	0.888	SYNONYMOUS_CODING Tps1 DOWNSTREAM CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16010376	3R_16010376_SNP [dm3] 3R_20184654_SNP [dm6]	A	G	4.509e^-5	0.888	INTERGENIC
2L	16298490	2L_16298490_SNP [dm3] 2L_16298490_SNP [dm6]	C	A	4.510e^-5	0.888	INTRON heix	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11872809	3L_11872809_SNP [dm3] 3L_11879709_SNP [dm6]	G	A	4.576e^-5	0.888	SYNONYMOUS_CODING CG14128 INTRON CG44837
2L	2397267	2L_2397267_SNP [dm3] 2L_2397267_SNP [dm6]	T	C	4.591e^-5	0.888	INTRON VGlut
3R	6177376	3R_6177376_SNP [dm3] 3R_10351654_SNP [dm6]	C	T	4.737e^-5	0.888	INTRON jumu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	4073086	2R_4073086_SNP [dm3] 2R_8185581_SNP [dm6]	T	C	4.747e^-5	0.888	INTRON LRP1
2R	19602537	2R_19602537_INS [dm3] 2R_23715014_INS [dm6]	C	CA	4.764e^-5	0.888	INTRON Sesn
3R	24512098	3R_24512098_SNP [dm3] 3R_28686376_SNP [dm6]	G	C	4.828e^-5	0.888	UTR_5_PRIME CG9990 INTRON CG9990	TF binding site mE1_TFBS_cnc
2L	3860362	2L_3860362_SNP [dm3] 2L_3860362_SNP [dm6]	A	T	4.837e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
X	11831217	X_11831217_SNP [dm3] X_11937184_SNP [dm6]	A	T	4.892e^-5	0.888	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	7638080	3L_7638080_SNP [dm3] 3L_7644980_SNP [dm6]	G	C	4.907e^-5	0.888	INTERGENIC
3L	11326548	3L_11326548_SNP [dm3] 3L_11333448_SNP [dm6]	A	C	4.939e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	954269	3L_954269_SNP [dm3] 3L_954269_SNP [dm6]	C	T	5.040e^-5	0.888	INTRON Glut1
3R	16381719	3R_16381719_SNP [dm3] 3R_20555997_SNP [dm6]	G	A	5.044e^-5	0.888	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	3531189	2R_3531189_SNP [dm3] 2R_7643684_SNP [dm6]	C	T	5.141e^-5	0.888	SYNONYMOUS_CODING CG43340 INTRON CG43340
X	12996538	X_12996538_SNP [dm3] X_13102505_SNP [dm6]	T	C	5.148e^-5	0.888	INTRON CG43313
2R	16580490	2R_16580490_INS [dm3] 2R_20692985_INS [dm6]	T	TAAAGT	5.184e^-5	0.888	DOWNSTREAM CR44659 INTRON CG13438
2R	16580507	2R_16580507_SNP [dm3] 2R_20693002_SNP [dm6]	C	T	5.184e^-5	0.888	DOWNSTREAM CR44659 INTRON CG13438
2R	7933965	2R_7933965_SNP [dm3] 2R_12046460_SNP [dm6]	A	T	5.228e^-5	0.888	INTRON Drep-1
X	13776971	X_13776971_SNP [dm3] X_13882938_SNP [dm6]	A	T	5.245e^-5	0.888	UTR_3_PRIME mamo INTRON mamo
2L	5573584	2L_5573584_SNP [dm3] 2L_5573584_SNP [dm6]	A	C	5.253e^-5	0.888	INTERGENIC
2R	16580514	2R_16580514_SNP [dm3] 2R_20693009_SNP [dm6]	C	T	5.343e^-5	0.888	DOWNSTREAM CR44659 INTRON CG13438
X	14086942	X_14086942_SNP [dm3] X_14192909_SNP [dm6]	A	T	5.432e^-5	0.888	UPSTREAM CG13403 & 1 other INTERGENIC
2L	2397259	2L_2397259_SNP [dm3] 2L_2397259_SNP [dm6]	T	C	5.506e^-5	0.888	INTRON VGlut
3L	2638257	3L_2638257_SNP [dm3] 3L_2638257_SNP [dm6]	T	C	5.592e^-5	0.888	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4356713	2R_4356713_SNP [dm3] 2R_8469208_SNP [dm6]	A	G	5.608e^-5	0.888	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
3L	10147959	3L_10147959_SNP [dm3] 3L_10154859_SNP [dm6]	C	T	5.688e^-5	0.888	SYNONYMOUS_CODING dpr10
X	8292422	X_8292422_SNP [dm3] X_8398389_SNP [dm6]	G	A	5.857e^-5	0.888	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14053053	3R_14053053_SNP [dm3] 3R_18227331_SNP [dm6]	G	C	5.862e^-5	0.888	INTRON Mdh2
2L	3836086	2L_3836086_SNP [dm3] 2L_3836086_SNP [dm6]	G	C	5.912e^-5	0.888	UPSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	3836064	2L_3836064_SNP [dm3] 2L_3836064_SNP [dm6]	A	G	5.955e^-5	0.888	UPSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	6441386	2R_6441386_SNP [dm3] 2R_10553881_SNP [dm6]	T	C	5.964e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	1863447	3L_1863447_SNP [dm3] 3L_1863447_SNP [dm6]	G	A	6.003e^-5	0.888	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3901412	2L_3901412_SNP [dm3] 2L_3901412_SNP [dm6]	C	T	6.014e^-5	0.888	INTRON capu
2R	16577984	2R_16577984_SNP [dm3] 2R_20690479_SNP [dm6]	A	T	6.026e^-5	0.888	INTERGENIC
2R	16578991	2R_16578991_SNP [dm3] 2R_20691486_SNP [dm6]	A	T	6.060e^-5	0.888	UPSTREAM CR44659 INTERGENIC
X	12245826	X_12245826_SNP [dm3] X_12351793_SNP [dm6]	A	G	6.073e^-5	0.888	INTERGENIC
2R	11963898	2R_11963898_SNP [dm3] 2R_16076393_SNP [dm6]	C	T	6.091e^-5	0.888	INTERGENIC
2R	16579060	2R_16579060_SNP [dm3] 2R_20691555_SNP [dm6]	A	T	6.274e^-5	0.888	UPSTREAM CR44659 INTERGENIC
2L	16538483	2L_16538483_SNP [dm3] 2L_16538483_SNP [dm6]	A	G	6.289e^-5	0.888	INTERGENIC
3R	22877732	3R_22877732_SNP [dm3] 3R_27052010_SNP [dm6]	G	A	6.364e^-5	0.888	INTRON RYa-R
3R	9483440	3R_9483440_INS [dm3] 3R_13657718_INS [dm6]	G	GG	6.385e^-5	0.888	UTR_3_PRIME Hrb87F DOWNSTREAM Hrb87F INTRON Hrb87F
2R	9519520	2R_9519520_SNP [dm3] 2R_13632015_SNP [dm6]	A	G	6.399e^-5	0.888	INTRON fas
2L	4218418	2L_4218418_SNP [dm3] 2L_4218418_SNP [dm6]	A	T	6.408e^-5	0.888	INTRON ft
3L	16042089	3L_16042089_SNP [dm3] 3L_16048989_SNP [dm6]	A	G	6.464e^-5	0.888	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11831219	X_11831219_SNP [dm3] X_11937186_SNP [dm6]	G	A	6.563e^-5	0.888	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19359709	2R_19359709_SNP [dm3] 2R_23472186_SNP [dm6]	C	T	6.592e^-5	0.888	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
2R	20139933	2R_20139933_DEL [dm3] 2R_24252410_DEL [dm6]	GTTA	G	6.631e^-5	0.888	INTRON nord
3L	18324637	3L_18324637_SNP [dm3] 3L_18331537_SNP [dm6]	A	T	6.687e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20139928	2R_20139928_DEL [dm3] 2R_24252405_DEL [dm6]	AGTT	A	6.688e^-5	0.888	INTRON nord
2R	8620480	2R_8620480_SNP [dm3] 2R_12732975_SNP [dm6]	A	C	6.742e^-5	0.888	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22442892	3L_22442892_SNP [dm3] 3L_22449792_SNP [dm6]	A	C	6.776e^-5	0.888	INTERGENIC
2R	6773833	2R_6773833_SNP [dm3] 2R_10886328_SNP [dm6]	A	G	6.853e^-5	0.888	UTR_3_PRIME CG18004 UPSTREAM CG30020 DOWNSTREAM mir-1008	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9539541	2L_9539541_SNP [dm3] 2L_9539541_SNP [dm6]	C	A	6.883e^-5	0.888	UTR_3_PRIME Oatp30B UPSTREAM CG17855
X	3771360	X_3771360_SNP [dm3] X_3877327_SNP [dm6]	T	C	6.963e^-5	0.888	SYNONYMOUS_CODING CG2930
3L	5909599	3L_5909599_SNP [dm3] 3L_5916499_SNP [dm6]	G	A	6.973e^-5	0.888	INTRON CG13288
3R	16381718	3R_16381718_SNP [dm3] 3R_20555996_SNP [dm6]	T	C	6.990e^-5	0.888	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20126135	3R_20126135_SNP [dm3] 3R_24300413_SNP [dm6]	G	A	6.994e^-5	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
3L	2634547	3L_2634547_SNP [dm3] 3L_2634547_SNP [dm6]	T	C	7.023e^-5	0.888	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13148099	3L_13148099_SNP [dm3] 3L_13154999_SNP [dm6]	C	G	7.122e^-5	0.888	INTERGENIC
X	13026773	X_13026773_DEL [dm3] X_13132740_DEL [dm6]	AA	A	7.162e^-5	0.888	INTRON MFS10 & 1 other	TF binding site mE1_TFBS_cad
3L	10149350	3L_10149350_SNP [dm3] 3L_10156250_SNP [dm6]	A	C	7.168e^-5	0.888	INTRON dpr10
3L	5909512	3L_5909512_DEL [dm3] 3L_5916412_DEL [dm6]	ACGTTATCAA	A	7.184e^-5	0.888	INTRON CG13288
2R	11695514	2R_11695514_SNP [dm3] 2R_15808009_SNP [dm6]	C	T	7.337e^-5	0.888	INTRON tun & 1 other
2L	620952	2L_620952_SNP [dm3] 2L_620952_SNP [dm6]	T	A	7.427e^-5	0.888	SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19466747	2R_19466747_SNP [dm3] 2R_23579224_SNP [dm6]	A	C	7.457e^-5	0.888	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10851454	2L_10851454_SNP [dm3] 2L_10851454_SNP [dm6]	C	T	7.540e^-5	0.888	SYNONYMOUS_CODING CG43129 UTR_5_PRIME CG43129 UPSTREAM porin	TF binding site BDTNP1_TFBS_dl
2R	16240736	2R_16240736_SNP [dm3] 2R_20353231_SNP [dm6]	A	C	7.555e^-5	0.888	DOWNSTREAM CG11192 INTERGENIC
3R	22897568	3R_22897568_SNP [dm3] 3R_27071846_SNP [dm6]	C	A	7.568e^-5	0.888	INTERGENIC
3L	7624495	3L_7624495_SNP [dm3] 3L_7631395_SNP [dm6]	A	T	7.644e^-5	0.888	INTRON CG33275
3L	3019865	3L_3019865_SNP [dm3] 3L_3019865_SNP [dm6]	A	T	7.713e^-5	0.888	INTERGENIC
3R	20126258	3R_20126258_SNP [dm3] 3R_24300536_SNP [dm6]	C	T	7.731e^-5	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
3R	26273116	3R_26273116_SNP [dm3] 3R_30447394_SNP [dm6]	A	T	7.850e^-5	0.888	INTRON aralar1	TF binding site mE1_TFBS_HSA
2L	4696052	2L_4696052_SNP [dm3] 2L_4696052_SNP [dm6]	A	G	7.903e^-5	0.888	INTRON CG34351	TF binding site mE1_TFBS_cad
2R	14278029	2R_14278029_DEL [dm3] 2R_18390524_DEL [dm6]	CACATCATTGG...	TTATA	7.964e^-5	0.888	DOWNSTREAM CG15065 INTRON CG15068
3R	19779153	3R_19779153_SNP [dm3] 3R_23953431_SNP [dm6]	C	A	7.975e^-5	0.888	INTRON Aats-glupro	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25495097	3R_25495097_SNP [dm3] 3R_29669375_SNP [dm6]	T	C	7.999e^-5	0.888	SPLICE_SITE_REGION ppk30 UPSTREAM ppk20 INTRON ppk30	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	16296397	2R_16296397_SNP [dm3] 2R_20408892_SNP [dm6]	G	A	8.070e^-5	0.888	INTERGENIC
3L	3016877	3L_3016877_SNP [dm3] 3L_3016877_SNP [dm6]	C	G	8.077e^-5	0.888	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
2L	1978543	2L_1978543_SNP [dm3] 2L_1978543_SNP [dm6]	G	T	8.183e^-5	0.888	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3399420	2L_3399420_SNP [dm3] 2L_3399420_SNP [dm6]	A	G	8.227e^-5	0.888	DOWNSTREAM CG34175 INTERGENIC
2L	6464513	2L_6464513_SNP [dm3] 2L_6464513_SNP [dm6]	T	G	8.303e^-5	0.888	INTRON CG16947	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15451622	3R_15451622_SNP [dm3] 3R_19625900_SNP [dm6]	G	A	8.429e^-5	0.888	UPSTREAM CG6231 INTRON CG6231
2R	16444773	2R_16444773_SNP [dm3] 2R_20557268_SNP [dm6]	G	T	8.471e^-5	0.888	INTRON lms	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7947029	2R_7947029_SNP [dm3] 2R_12059524_SNP [dm6]	G	A	8.500e^-5	0.888	INTRON Drep-3
2L	19595378	2L_19595378_SNP [dm3] 2L_19595378_SNP [dm6]	G	A	8.526e^-5	0.888	INTRON Lar
2L	8009195	2L_8009195_SNP [dm3] 2L_8009195_SNP [dm6]	G	A	8.573e^-5	0.888	SPLICE_SITE_REGION CG12560 SYNONYMOUS_CODING CG12560 DOWNSTREAM CG34010	TF binding site mE1_TFBS_Trl
3R	13738670	3R_13738670_SNP [dm3] 3R_17912948_SNP [dm6]	T	A	8.628e^-5	0.888	DOWNSTREAM CG43445 INTRON Rim
3R	18227516	3R_18227516_SNP [dm3] 3R_22401794_SNP [dm6]	G	C	8.635e^-5	0.888	UPSTREAM CG13856 INTERGENIC
2L	12487251	2L_12487251_SNP [dm3] 2L_12487251_SNP [dm6]	A	G	8.641e^-5	0.888	INTRON bun
3L	5905631	3L_5905631_SNP [dm3] 3L_5912531_SNP [dm6]	A	T	8.653e^-5	0.888	INTRON CG13288
2R	16591689	2R_16591689_SNP [dm3] 2R_20704184_SNP [dm6]	G	A	8.807e^-5	0.888	INTRON dpr
3L	7472383	3L_7472383_SNP [dm3] 3L_7479283_SNP [dm6]	G	A	8.823e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
3L	19446902	3L_19446902_SNP [dm3] 3L_19453802_SNP [dm6]	T	C	8.918e^-5	0.888	UPSTREAM CR45434 INTERGENIC
3R	16838891	3R_16838891_SNP [dm3] 3R_21013169_SNP [dm6]	A	G	8.944e^-5	0.888	UTR_3_PRIME Calx
2R	12387808	2R_12387808_SNP [dm3] 2R_16500303_SNP [dm6]	T	C	8.947e^-5	0.888	UTR_5_PRIME Sema-2a UPSTREAM CG7813	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17780680	2R_17780680_SNP [dm3] 2R_21893175_SNP [dm6]	T	G	8.983e^-5	0.888	INTRON Fili
3L	18257188	3L_18257188_SNP [dm3] 3L_18264088_SNP [dm6]	C	T	9.002e^-5	0.888	INTERGENIC
2L	9596062	2L_9596062_SNP [dm3] 2L_9596062_SNP [dm6]	C	A	9.069e^-5	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19365126	3L_19365126_SNP [dm3] 3L_19372026_SNP [dm6]	C	A	9.156e^-5	0.888	INTRON CG32206	TF binding site mE1_TFBS_inv
2L	4809532	2L_4809532_SNP [dm3] 2L_4809532_SNP [dm6]	A	C	9.254e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6925668	2R_6925668_SNP [dm3] 2R_11038163_SNP [dm6]	C	T	9.278e^-5	0.888	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13076203	2L_13076203_SNP [dm3] 2L_13076203_SNP [dm6]	C	A	9.284e^-5	0.888	INTERGENIC
3R	357655	3R_357655_SNP [dm3] 3R_4531933_SNP [dm6]	T	A	9.324e^-5	0.888	INTRON CG34357
3R	374318	3R_374318_SNP [dm3] 3R_4548596_SNP [dm6]	T	A	9.327e^-5	0.888	INTRON CG34357
3R	10313865	3R_10313865_SNP [dm3] 3R_14488143_SNP [dm6]	C	T	9.456e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14306303	2L_14306303_SNP [dm3] 2L_14306303_SNP [dm6]	C	T	9.635e^-5	0.888	INTRON wb	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	14757040	3R_14757040_SNP [dm3] 3R_18931318_SNP [dm6]	A	T	9.648e^-5	0.888	UTR_5_PRIME CG42613	TF binding site mE1_TFBS_Trl
2L	4809533	2L_4809533_SNP [dm3] 2L_4809533_SNP [dm6]	A	G	9.685e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9543752	2L_9543752_SNP [dm3] 2L_9543752_SNP [dm6]	G	C	9.734e^-5	0.888	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
2R	5167594	2R_5167594_SNP [dm3] 2R_9280089_SNP [dm6]	C	T	9.828e^-5	0.888	INTRON Pkn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16284895	2R_16284895_SNP [dm3] 2R_20397390_SNP [dm6]	A	G	9.847e^-5	0.888	INTERGENIC
2L	17214928	2L_17214928_SNP [dm3] 2L_17214928_SNP [dm6]	A	G	9.906e^-5	0.888	INTRON beat-IIIc
2L	14012685	2L_14012685_SNP [dm3] 2L_14012685_SNP [dm6]	T	A	1.014e^-4	0.888	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12638482	2R_12638482_SNP [dm3] 2R_16750977_SNP [dm6]	G	A	1.017e^-4	0.888	SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
2L	5631241	2L_5631241_SNP [dm3] 2L_5631241_SNP [dm6]	G	A	1.033e^-4	0.888	DOWNSTREAM CR44822 INTRON CG31646
2L	5817535	2L_5817535_SNP [dm3] 2L_5817535_SNP [dm6]	G	T	1.040e^-4	0.888	DOWNSTREAM CG31644 INTERGENIC
2R	19627064	2R_19627064_SNP [dm3] 2R_23739541_SNP [dm6]	T	C	1.047e^-4	0.888	INTRON egl
3L	15116962	3L_15116962_SNP [dm3] 3L_15123862_SNP [dm6]	G	A	1.058e^-4	0.888	INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7236406	2L_7236406_SNP [dm3] 2L_7236406_SNP [dm6]	T	A	1.064e^-4	0.888	INTRON Ndae1	TF binding site mE1_TFBS_cad
X	11831188	X_11831188_SNP [dm3] X_11937155_SNP [dm6]	G	T	1.065e^-4	0.888	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9520235	2R_9520235_SNP [dm3] 2R_13632730_SNP [dm6]	G	C	1.074e^-4	0.888	INTRON fas
3R	3940252	3R_3940252_DEL [dm3] 3R_8114530_DEL [dm6]	GTGCG	G	1.080e^-4	0.888	UPSTREAM CR44331 INTRON puc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25032948	3R_25032948_SNP [dm3] 3R_29207226_SNP [dm6]	T	G	1.083e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	10094296	X_10094296_SNP [dm3] X_10200263_SNP [dm6]	T	C	1.085e^-4	0.888	INTRON CR44894
3R	695355	3R_695355_SNP [dm3] 3R_4869633_SNP [dm6]	G	C	1.097e^-4	0.888	UTR_3_PRIME opa
2R	12327906	2R_12327906_SNP [dm3] 2R_16440401_SNP [dm6]	T	A	1.106e^-4	0.888	INTERGENIC
2R	7627811	2R_7627811_SNP [dm3] 2R_11740306_SNP [dm6]	A	G	1.109e^-4	0.888	INTERGENIC
2R	6757777	2R_6757777_SNP [dm3] 2R_10870272_SNP [dm6]	G	A	1.110e^-4	0.888	INTRON CG30015	TF binding site BDTNP1_TFBS_da
3L	21187174	3L_21187174_SNP [dm3] 3L_21194074_SNP [dm6]	C	T	1.130e^-4	0.888	UPSTREAM CG42337 DOWNSTREAM park INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14233979	3R_14233979_SNP [dm3] 3R_18408257_SNP [dm6]	T	C	1.135e^-4	0.888	INTRON CG31122	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1034392	2L_1034392_SNP [dm3] 2L_1034392_SNP [dm6]	T	C	1.137e^-4	0.888	INTRON IA-2
2R	21076438	2R_21076438_SNP [dm3] 2R_25188915_SNP [dm6]	A	G	1.143e^-4	0.888	UPSTREAM CG9380 INTRON CG9380
2R	9559742	2R_9559742_DEL [dm3] 2R_13672237_DEL [dm6]	TGC	T	1.147e^-4	0.888	UPSTREAM CR45031 DOWNSTREAM CG18368 INTRON fas
3R	16383064	3R_16383064_SNP [dm3] 3R_20557342_SNP [dm6]	A	T	1.151e^-4	0.888	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	16383098	3R_16383098_SNP [dm3] 3R_20557376_SNP [dm6]	C	T	1.151e^-4	0.888	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16383118	3R_16383118_SNP [dm3] 3R_20557396_SNP [dm6]	C	T	1.151e^-4	0.888	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16241276	2R_16241276_SNP [dm3] 2R_20353771_SNP [dm6]	T	A	1.152e^-4	0.888	DOWNSTREAM CG11192 INTERGENIC
3R	21504903	3R_21504903_SNP [dm3] 3R_25679181_SNP [dm6]	C	G	1.153e^-4	0.888	UPSTREAM CG4730 DOWNSTREAM CG4743 INTRON CG5039	TF binding site mE1_TFBS_sens
2L	13886219	2L_13886219_SNP [dm3] 2L_13886219_SNP [dm6]	T	A	1.153e^-4	0.888	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16042078	3L_16042078_INS [dm3] 3L_16048978_INS [dm6]	G	GCTTG	1.158e^-4	0.888	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11963912	2R_11963912_SNP [dm3] 2R_16076407_SNP [dm6]	C	T	1.159e^-4	0.888	INTERGENIC
2L	16581229	2L_16581229_SNP [dm3] 2L_16581229_SNP [dm6]	A	T	1.162e^-4	0.888	INTRON CG42389
2R	20355814	2R_20355814_SNP [dm3] 2R_24468291_SNP [dm6]	A	G	1.166e^-4	0.888	INTRON CG13579
3R	15438189	3R_15438189_SNP [dm3] 3R_19612467_SNP [dm6]	T	A	1.174e^-4	0.888	UPSTREAM CG16727 DOWNSTREAM CG17752 INTERGENIC
3R	1000218	3R_1000218_SNP [dm3] 3R_5174496_SNP [dm6]	C	T	1.187e^-4	0.888	SYNONYMOUS_CODING cno UTR_3_PRIME cno
2L	6265530	2L_6265530_SNP [dm3] 2L_6265530_SNP [dm6]	G	A	1.189e^-4	0.888	INTRON Ddr
2L	14009807	2L_14009807_SNP [dm3] 2L_14009807_SNP [dm6]	T	A	1.195e^-4	0.888	DOWNSTREAM CG42692 & 1 other INTERGENIC
3R	16307995	3R_16307995_SNP [dm3] 3R_20482273_SNP [dm6]	A	G	1.201e^-4	0.888	INTRON Gfrl
2R	6745271	2R_6745271_SNP [dm3] 2R_10857766_SNP [dm6]	A	G	1.209e^-4	0.888	INTRON CG30015
2L	19798517	2L_19798517_SNP [dm3] 2L_19798517_SNP [dm6]	A	G	1.213e^-4	0.888	INTRON sick
2L	9387371	2L_9387371_SNP [dm3] 2L_9387371_SNP [dm6]	A	T	1.227e^-4	0.888	UPSTREAM Aldh INTRON Shawl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9519763	2R_9519763_SNP [dm3] 2R_13632258_SNP [dm6]	C	T	1.230e^-4	0.888	INTRON fas
3R	15438220	3R_15438220_SNP [dm3] 3R_19612498_SNP [dm6]	T	G	1.242e^-4	0.888	UPSTREAM CG16727 DOWNSTREAM CG17752 INTERGENIC
3R	18010240	3R_18010240_SNP [dm3] 3R_22184518_SNP [dm6]	C	T	1.248e^-4	0.888	INTRON SKIP
3L	6765943	3L_6765943_SNP [dm3] 3L_6772843_SNP [dm6]	C	A	1.249e^-4	0.888	INTERGENIC
2L	2397237	2L_2397237_SNP [dm3] 2L_2397237_SNP [dm6]	T	C	1.262e^-4	0.888	INTRON VGlut
2L	1018421	2L_1018421_SNP [dm3] 2L_1018421_SNP [dm6]	T	G	1.273e^-4	0.888	INTRON IA-2
3L	23947106	3L_23947106_SNP [dm3] 3L_23954006_SNP [dm6]	G	C	1.276e^-4	0.888	INTRON CG40470
3L	2178636	3L_2178636_SNP [dm3] 3L_2178636_SNP [dm6]	T	G	1.289e^-4	0.888	INTERGENIC
2R	15394497	2R_15394497_SNP [dm3] 2R_19506992_SNP [dm6]	C	G	1.290e^-4	0.888	UPSTREAM tRNA:H:56E INTERGENIC
3R	22742916	3R_22742916_SNP [dm3] 3R_26917194_SNP [dm6]	A	G	1.296e^-4	0.888	INTRON sda
3L	6590474	3L_6590474_SNP [dm3] 3L_6597374_SNP [dm6]	A	G	1.300e^-4	0.888	NON_SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
2L	3399299	2L_3399299_SNP [dm3] 2L_3399299_SNP [dm6]	G	T	1.302e^-4	0.888	DOWNSTREAM CG34175 INTERGENIC
3L	7634879	3L_7634879_SNP [dm3] 3L_7641779_SNP [dm6]	A	G	1.307e^-4	0.888	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	13781671	3L_13781671_SNP [dm3] 3L_13788571_SNP [dm6]	C	A	1.312e^-4	0.888	INTRON bru-3
2R	19085512	2R_19085512_SNP [dm3] 2R_23197989_SNP [dm6]	G	C	1.316e^-4	0.888	INTRON CG34371
3R	16307980	3R_16307980_DEL [dm3] 3R_20482258_DEL [dm6]	GCCCAATTC	G	1.323e^-4	0.888	INTRON Gfrl
2R	16623141	2R_16623141_SNP [dm3] 2R_20735636_SNP [dm6]	A	C	1.337e^-4	0.888	INTRON dpr
3L	7632961	3L_7632961_SNP [dm3] 3L_7639861_SNP [dm6]	T	G	1.340e^-4	0.888	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2L	17414446	2L_17414446_SNP [dm3] 2L_17414446_SNP [dm6]	A	G	1.352e^-4	0.888	DOWNSTREAM CG15141 & 1 other INTRON Dif
3L	2634578	3L_2634578_SNP [dm3] 3L_2634578_SNP [dm6]	T	C	1.356e^-4	0.888	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2634361	3L_2634361_SNP [dm3] 3L_2634361_SNP [dm6]	T	G	1.357e^-4	0.888	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	20521685	2R_20521685_SNP [dm3] 2R_24634162_SNP [dm6]	T	C	1.359e^-4	0.888	INTRON CG13594
2R	6293751	2R_6293751_SNP [dm3] 2R_10406246_SNP [dm6]	T	G	1.368e^-4	0.888	DOWNSTREAM CG12898 INTRON CG42732
3R	25129676	3R_25129676_SNP [dm3] 3R_29303954_SNP [dm6]	G	A	1.370e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2710138	3L_2710138_SNP [dm3] 3L_2710138_SNP [dm6]	C	A	1.372e^-4	0.888	INTRON Fife
3L	7655631	3L_7655631_SNP [dm3] 3L_7662531_SNP [dm6]	T	A	1.376e^-4	0.888	NON_SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18673386	3R_18673386_SNP [dm3] 3R_22847664_SNP [dm6]	A	T	1.384e^-4	0.888	INTERGENIC
3L	2284238	3L_2284238_SNP [dm3] 3L_2284238_SNP [dm6]	T	A	1.385e^-4	0.888	INTRON MsR2
3R	918518	3R_918518_SNP [dm3] 3R_5092796_SNP [dm6]	G	T	1.403e^-4	0.888	INTERGENIC
2R	13534965	2R_13534965_SNP [dm3] 2R_17647460_SNP [dm6]	A	G	1.417e^-4	0.888	UTR_3_PRIME CCHa1-R
3R	24515791	3R_24515791_SNP [dm3] 3R_28690069_SNP [dm6]	A	G	1.421e^-4	0.888	INTRON CG9990	TF binding site mE1_TFBS_inv
2R	8620691	2R_8620691_SNP [dm3] 2R_12733186_SNP [dm6]	T	A	1.428e^-4	0.888	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18017511	3R_18017511_SNP [dm3] 3R_22191789_SNP [dm6]	C	T	1.430e^-4	0.888	INTRON SKIP
3L	9888993	3L_9888993_SNP [dm3] 3L_9895893_SNP [dm6]	G	T	1.438e^-4	0.888	INTRON CG6707
2R	19602499	2R_19602499_SNP [dm3] 2R_23714976_SNP [dm6]	C	A	1.442e^-4	0.888	INTRON Sesn
3R	10305324	3R_10305324_SNP [dm3] 3R_14479602_SNP [dm6]	C	T	1.446e^-4	0.888	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	14750881	X_14750881_SNP [dm3] X_14856848_SNP [dm6]	C	A	1.450e^-4	0.888	UPSTREAM CG9519 INTRON Flo2
3R	21444069	3R_21444069_INS [dm3] 3R_25618347_INS [dm6]	T	TTTA	1.452e^-4	0.888	UPSTREAM CG5071 INTRON Npl4
2L	3526443	2L_3526443_SNP [dm3] 2L_3526443_SNP [dm6]	T	C	1.457e^-4	0.888	NON_SYNONYMOUS_CODING CG8852 DOWNSTREAM Spindly	TF binding site mE1_TFBS_HSA
2L	3415429	2L_3415429_SNP [dm3] 2L_3415429_SNP [dm6]	A	G	1.458e^-4	0.888	INTRON pgant2
3L	2638269	3L_2638269_SNP [dm3] 3L_2638269_SNP [dm6]	C	G	1.463e^-4	0.888	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10149337	3L_10149337_SNP [dm3] 3L_10156237_SNP [dm6]	G	A	1.464e^-4	0.888	INTRON dpr10
3R	25604200	3R_25604200_SNP [dm3] 3R_29778478_SNP [dm6]	G	C	1.477e^-4	0.888	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
2L	3121581	2L_3121581_SNP [dm3] 2L_3121581_SNP [dm6]	G	A	1.477e^-4	0.888	INTRON toc
3R	14531973	3R_14531973_SNP [dm3] 3R_18706251_SNP [dm6]	C	G	1.479e^-4	0.888	INTRON VAChT & 1 other
2L	644447	2L_644447_SNP [dm3] 2L_644447_SNP [dm6]	T	A	1.487e^-4	0.888	SYNONYMOUS_CODING ds
3R	20552574	3R_20552574_SNP [dm3] 3R_24726852_SNP [dm6]	T	C	1.488e^-4	0.888	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14277201	2R_14277201_SNP [dm3] 2R_18389696_SNP [dm6]	A	G	1.490e^-4	0.888	UPSTREAM CG15065 DOWNSTREAM IM3 & 2 others INTERGENIC
3R	19292289	3R_19292289_SNP [dm3] 3R_23466567_SNP [dm6]	C	T	1.493e^-4	0.888	INTRON CG4374
2R	19148105	2R_19148105_SNP [dm3] 2R_23260582_SNP [dm6]	T	G	1.495e^-4	0.888	INTERGENIC
2L	1620342	2L_1620342_SNP [dm3] 2L_1620342_SNP [dm6]	C	G	1.503e^-4	0.888	EXON CR44603
X	3321616	X_3321616_SNP [dm3] X_3427583_SNP [dm6]	T	G	1.507e^-4	0.888	UPSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10149903	3L_10149903_SNP [dm3] 3L_10156803_SNP [dm6]	A	G	1.510e^-4	0.888	INTRON dpr10
2L	7754090	2L_7754090_SNP [dm3] 2L_7754090_SNP [dm6]	C	A	1.511e^-4	0.888	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3R	16330058	3R_16330058_SNP [dm3] 3R_20504336_SNP [dm6]	C	T	1.518e^-4	0.888	UPSTREAM MtnB & 1 other INTERGENIC
X	5826390	X_5826390_SNP [dm3] X_5932357_SNP [dm6]	G	T	1.520e^-4	0.888	INTRON CG3726
3R	5443106	3R_5443106_SNP [dm3] 3R_9617384_SNP [dm6]	A	T	1.522e^-4	0.888	INTRON CG8312
2R	19307309	2R_19307309_DEL [dm3] 2R_23419786_DEL [dm6]	CAGGGAACTC	C	1.523e^-4	0.888	UPSTREAM CG9812 INTERGENIC
2R	19360079	2R_19360079_SNP [dm3] 2R_23472556_SNP [dm6]	C	G	1.529e^-4	0.888	SYNONYMOUS_CODING Or59c UPSTREAM Or59b INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13182553	3L_13182553_SNP [dm3] 3L_13189453_SNP [dm6]	T	C	1.535e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5431047	3L_5431047_SNP [dm3] 3L_5437947_SNP [dm6]	T	G	1.539e^-4	0.888	INTRON CG34391
2L	7754111	2L_7754111_SNP [dm3] 2L_7754111_SNP [dm6]	T	C	1.546e^-4	0.888	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3R	17690485	3R_17690485_INS [dm3] 3R_21864763_INS [dm6]	T	TG	1.547e^-4	0.888	UPSTREAM lsn INTERGENIC
2R	10517407	2R_10517407_SNP [dm3] 2R_14629902_SNP [dm6]	T	C	1.547e^-4	0.888	UPSTREAM CG10131 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16382373	3R_16382373_SNP [dm3] 3R_20556651_SNP [dm6]	T	C	1.547e^-4	0.888	UTR_5_PRIME att-ORFA INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13738734	3R_13738734_SNP [dm3] 3R_17913012_SNP [dm6]	T	G	1.547e^-4	0.888	DOWNSTREAM CG43445 INTRON Rim
3L	18258538	3L_18258538_SNP [dm3] 3L_18265438_SNP [dm6]	G	A	1.559e^-4	0.888	INTERGENIC
3R	18227993	3R_18227993_SNP [dm3] 3R_22402271_SNP [dm6]	G	A	1.560e^-4	0.888	UPSTREAM CG13856 INTERGENIC
X	10886055	X_10886055_DEL [dm3] X_10992022_DEL [dm6]	GGG	G	1.564e^-4	0.888	INTRON CG42339
2R	16579856	2R_16579856_SNP [dm3] 2R_20692351_SNP [dm6]	C	T	1.571e^-4	0.888	UPSTREAM CG13438 EXON CR44659
X	10886304	X_10886304_SNP [dm3] X_10992271_SNP [dm6]	A	G	1.576e^-4	0.888	INTRON CG42339
3R	21458417	3R_21458417_SNP [dm3] 3R_25632695_SNP [dm6]	G	A	1.587e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	1483685	X_1483685_SNP [dm3] X_1589652_SNP [dm6]	G	A	1.605e^-4	0.888	INTRON br & 1 other
3R	4641728	3R_4641728_SNP [dm3] 3R_8816006_SNP [dm6]	T	C	1.612e^-4	0.888	UTR_3_PRIME CG9821
3L	18259223	3L_18259223_SNP [dm3] 3L_18266123_SNP [dm6]	G	C	1.615e^-4	0.888	INTERGENIC
3R	18158895	3R_18158895_SNP [dm3] 3R_22333173_SNP [dm6]	G	A	1.617e^-4	0.888	UTR_3_PRIME CG5391 DOWNSTREAM CG13862
3L	7266156	3L_7266156_SNP [dm3] 3L_7273056_SNP [dm6]	A	C	1.619e^-4	0.888	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3R	18159022	3R_18159022_SNP [dm3] 3R_22333300_SNP [dm6]	T	C	1.632e^-4	0.888	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
3R	13497019	3R_13497019_SNP [dm3] 3R_17671297_SNP [dm6]	T	C	1.640e^-4	0.888	UTR_5_PRIME ald UPSTREAM CG7523	TF binding site BDTNP1_TFBS_dl
2L	10700449	2L_10700449_SNP [dm3] 2L_10700449_SNP [dm6]	G	A	1.640e^-4	0.888	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
X	14268468	X_14268468_SNP [dm3] X_14374435_SNP [dm6]	A	T	1.641e^-4	0.888	INTRON dpr8
2L	1136480	2L_1136480_SNP [dm3] 2L_1136480_SNP [dm6]	T	G	1.644e^-4	0.888	INTRON CG4577
3R	12468887	3R_12468887_SNP [dm3] 3R_16643165_SNP [dm6]	A	T	1.653e^-4	0.888	UPSTREAM CG10326 DOWNSTREAM nonA-l INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20355868	2R_20355868_SNP [dm3] 2R_24468345_SNP [dm6]	T	A	1.653e^-4	0.888	INTRON CG13579
3L	17240047	3L_17240047_SNP [dm3] 3L_17246947_SNP [dm6]	T	C	1.654e^-4	0.888	INTRON CR43870
3L	5909456	3L_5909456_SNP [dm3] 3L_5916356_SNP [dm6]	C	G	1.654e^-4	0.888	INTRON CG13288
2R	8620591	2R_8620591_SNP [dm3] 2R_12733086_SNP [dm6]	T	A	1.654e^-4	0.888	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14268467	X_14268467_SNP [dm3] X_14374434_SNP [dm6]	T	A	1.669e^-4	0.888	INTRON dpr8
3L	19048195	3L_19048195_SNP [dm3] 3L_19055095_SNP [dm6]	T	G	1.670e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs
3R	21444081	3R_21444081_SNP [dm3] 3R_25618359_SNP [dm6]	C	T	1.671e^-4	0.888	UPSTREAM CG5071 INTRON Npl4
2L	941583	2L_941583_SNP [dm3] 2L_941583_SNP [dm6]	T	A	1.674e^-4	0.888	INTRON CG4341
X	3435285	X_3435285_SNP [dm3] X_3541252_SNP [dm6]	C	T	1.675e^-4	0.888	INTRON CG32791
X	5871359	X_5871359_SNP [dm3] X_5977326_SNP [dm6]	T	G	1.678e^-4	0.888	INTRON Grip	TF binding site BDTNP1_TFBS_dl
3L	13147927	3L_13147927_SNP [dm3] 3L_13154827_SNP [dm6]	T	G	1.687e^-4	0.888	INTERGENIC
3L	18727103	3L_18727103_SNP [dm3] 3L_18734003_SNP [dm6]	C	T	1.702e^-4	0.888	INTERGENIC
2R	19602505	2R_19602505_SNP [dm3] 2R_23714982_SNP [dm6]	C	G	1.707e^-4	0.888	INTRON Sesn
3R	17998911	3R_17998911_DEL [dm3] 3R_22173189_DEL [dm6]	CGCCC	C	1.712e^-4	0.888	INTRON SKIP
3R	15313311	3R_15313311_SNP [dm3] 3R_19487589_SNP [dm6]	G	A	1.733e^-4	0.888	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15313341	3R_15313341_SNP [dm3] 3R_19487619_SNP [dm6]	C	T	1.733e^-4	0.888	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6539507	2R_6539507_SNP [dm3] 2R_10652002_SNP [dm6]	T	C	1.735e^-4	0.888	INTERGENIC
3R	18227510	3R_18227510_SNP [dm3] 3R_22401788_SNP [dm6]	A	C	1.735e^-4	0.888	UPSTREAM CG13856 INTERGENIC
3L	5185385	3L_5185385_SNP [dm3] 3L_5192285_SNP [dm6]	A	T	1.743e^-4	0.888	INTRON shep
3L	3016970	3L_3016970_SNP [dm3] 3L_3016970_SNP [dm6]	C	T	1.753e^-4	0.888	SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
X	12996543	X_12996543_SNP [dm3] X_13102510_SNP [dm6]	T	G	1.757e^-4	0.888	INTRON CG43313
2L	9539393	2L_9539393_SNP [dm3] 2L_9539393_SNP [dm6]	C	A	1.763e^-4	0.888	UTR_3_PRIME Oatp30B
2L	12453488	2L_12453488_SNP [dm3] 2L_12453488_SNP [dm6]	A	T	1.772e^-4	0.888	UPSTREAM CR17024 & 1 other INTERGENIC
3R	18673551	3R_18673551_SNP [dm3] 3R_22847829_SNP [dm6]	G	T	1.772e^-4	0.888	INTERGENIC
3R	2016914	3R_2016914_SNP [dm3] 3R_6191192_SNP [dm6]	G	C	1.773e^-4	0.888	INTRON NPFR
2R	19501508	2R_19501508_SNP [dm3] 2R_23613985_SNP [dm6]	T	C	1.784e^-4	0.888	INTRON CG17664 & 1 other
3R	15225711	3R_15225711_SNP [dm3] 3R_19399989_SNP [dm6]	G	C	1.790e^-4	0.888	INTRON Ino80
3R	19570625	3R_19570625_SNP [dm3] 3R_23744903_SNP [dm6]	A	C	1.791e^-4	0.888	INTRON Hmgcr
2R	12637729	2R_12637729_SNP [dm3] 2R_16750224_SNP [dm6]	T	A	1.801e^-4	0.888	UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c INTRON Acp53Ea
3R	23594845	3R_23594845_SNP [dm3] 3R_27769123_SNP [dm6]	C	T	1.805e^-4	0.888	UTR_3_PRIME CG34353 DOWNSTREAM CG34353
2L	9543844	2L_9543844_SNP [dm3] 2L_9543844_SNP [dm6]	T	A	1.806e^-4	0.888	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
3R	10313720	3R_10313720_SNP [dm3] 3R_14487998_SNP [dm6]	A	C	1.809e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17608897	X_17608897_SNP [dm3] X_17714864_SNP [dm6]	T	C	1.819e^-4	0.888	INTRON CG42684
3L	13182481	3L_13182481_DEL [dm3] 3L_13189381_DEL [dm6]	AA	T	1.830e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14207821	3R_14207821_SNP [dm3] 3R_18382099_SNP [dm6]	T	C	1.837e^-4	0.888	SYNONYMOUS_CODING CG14309 UPSTREAM CG7675	TF binding site mE1_TFBS_cad
3L	943561	3L_943561_SNP [dm3] 3L_943561_SNP [dm6]	G	T	1.837e^-4	0.888	INTRON Glut1
3R	22917321	3R_22917321_SNP [dm3] 3R_27091599_SNP [dm6]	C	T	1.842e^-4	0.888	UPSTREAM Cpr97Eb INTERGENIC
3L	7294704	3L_7294704_SNP [dm3] 3L_7301604_SNP [dm6]	C	T	1.849e^-4	0.888	INTRON unc-13-4A
X	14998312	X_14998312_SNP [dm3] X_15104279_SNP [dm6]	G	A	1.863e^-4	0.888	INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl
X	14267027	X_14267027_SNP [dm3] X_14372994_SNP [dm6]	T	C	1.874e^-4	0.888	INTRON dpr8
3R	10417743	3R_10417743_DEL [dm3] 3R_14592021_DEL [dm6]	GAA	G	1.878e^-4	0.888	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14094781	3R_14094781_SNP [dm3] 3R_18269059_SNP [dm6]	T	C	1.880e^-4	0.888	INTRON CG18599	TF binding site mE1_TFBS_inv
2R	20520728	2R_20520728_SNP [dm3] 2R_24633205_SNP [dm6]	C	A	1.886e^-4	0.888	UPSTREAM CR43787 DOWNSTREAM Cyp9c1 INTRON CG13594
2L	9544625	2L_9544625_SNP [dm3] 2L_9544625_SNP [dm6]	C	A	1.887e^-4	0.888	NON_SYNONYMOUS_CODING CG13113 DOWNSTREAM Cpr30B	TF binding site mE1_TFBS_cad
3R	22742913	3R_22742913_SNP [dm3] 3R_26917191_SNP [dm6]	G	A	1.895e^-4	0.888	INTRON sda
2R	14635016	2R_14635016_DEL [dm3] 2R_18747511_DEL [dm6]	ACA	A	1.896e^-4	0.888	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
3R	20126110	3R_20126110_DEL [dm3] 3R_24300388_DEL [dm6]	CCTTAGA	C	1.901e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
2L	9668224	2L_9668224_SNP [dm3] 2L_9668224_SNP [dm6]	C	T	1.902e^-4	0.888	INTERGENIC
2L	7754077	2L_7754077_SNP [dm3] 2L_7754077_SNP [dm6]	C	A	1.908e^-4	0.888	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2L	3566169	2L_3566169_SNP [dm3] 2L_3566169_SNP [dm6]	G	A	1.911e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6265532	2L_6265532_SNP [dm3] 2L_6265532_SNP [dm6]	A	G	1.911e^-4	0.888	INTRON Ddr
2L	12668507	2L_12668507_SNP [dm3] 2L_12668507_SNP [dm6]	A	G	1.916e^-4	0.888	SYNONYMOUS_CODING CG15485 INTRON pdm2
2L	3860584	2L_3860584_SNP [dm3] 2L_3860584_SNP [dm6]	C	A	1.925e^-4	0.888	DOWNSTREAM CR44078 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D
3R	20126117	3R_20126117_INS [dm3] 3R_24300395_INS [dm6]	T	TCG	1.927e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
2R	7627804	2R_7627804_SNP [dm3] 2R_11740299_SNP [dm6]	C	T	1.934e^-4	0.888	INTERGENIC
3R	16313275	3R_16313275_SNP [dm3] 3R_20487553_SNP [dm6]	T	C	1.940e^-4	0.888	UPSTREAM CR44401 INTERGENIC
2L	19781924	2L_19781924_SNP [dm3] 2L_19781924_SNP [dm6]	G	A	1.942e^-4	0.888	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad
3R	18673124	3R_18673124_SNP [dm3] 3R_22847402_SNP [dm6]	T	A	1.945e^-4	0.888	INTERGENIC
2R	16577496	2R_16577496_SNP [dm3] 2R_20689991_SNP [dm6]	G	C	1.946e^-4	0.888	INTERGENIC
3L	15643042	3L_15643042_SNP [dm3] 3L_15649942_SNP [dm6]	A	T	1.959e^-4	0.888	UTR_5_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other DOWNSTREAM CG43083
3L	18909194	3L_18909194_SNP [dm3] 3L_18916094_SNP [dm6]	G	C	1.960e^-4	0.888	INTERGENIC
3R	18673323	3R_18673323_SNP [dm3] 3R_22847601_SNP [dm6]	A	T	1.964e^-4	0.888	INTERGENIC
X	8293172	X_8293172_SNP [dm3] X_8399139_SNP [dm6]	G	T	1.980e^-4	0.888	UTR_5_PRIME CG10555 UPSTREAM CG15345	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18227995	3R_18227995_SNP [dm3] 3R_22402273_SNP [dm6]	C	G	1.984e^-4	0.888	UPSTREAM CG13856 INTERGENIC
3L	8460102	3L_8460102_SNP [dm3] 3L_8467002_SNP [dm6]	G	C	1.989e^-4	0.888	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9385433	2L_9385433_SNP [dm3] 2L_9385433_SNP [dm6]	A	G	1.996e^-4	0.888	INTRON Shawl
2L	265630	2L_265630_SNP [dm3] 2L_265630_SNP [dm6]	T	C	2.013e^-4	0.888	SYNONYMOUS_CODING CG17075 INTRON CG3645	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10138411	3R_10138411_SNP [dm3] 3R_14312689_SNP [dm6]	A	G	2.015e^-4	0.888	SPLICE_SITE_REGION CG31321 INTRON CG31321
3L	13182540	3L_13182540_SNP [dm3] 3L_13189440_SNP [dm6]	T	C	2.023e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5912106	3L_5912106_SNP [dm3] 3L_5919006_SNP [dm6]	A	G	2.025e^-4	0.888	INTRON CG10483 EXON CR45167
X	5007091	X_5007091_SNP [dm3] X_5113058_SNP [dm6]	G	C	2.047e^-4	0.888	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14761298	3R_14761298_SNP [dm3] 3R_18935576_SNP [dm6]	C	T	2.056e^-4	0.888	INTRON CG42613
2L	19608748	2L_19608748_SNP [dm3] 2L_19608748_SNP [dm6]	C	T	2.058e^-4	0.888	INTRON Lar
2L	7754086	2L_7754086_SNP [dm3] 2L_7754086_SNP [dm6]	T	G	2.077e^-4	0.888	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
3R	302846	3R_302846_SNP [dm3] 3R_4477124_SNP [dm6]	A	G	2.082e^-4	0.888	INTRON CG31523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8625188	X_8625188_SNP [dm3] X_8731155_SNP [dm6]	T	A	2.087e^-4	0.888	INTERGENIC
3R	6175592	3R_6175592_SNP [dm3] 3R_10349870_SNP [dm6]	A	T	2.098e^-4	0.888	NON_SYNONYMOUS_CODING CG31406 UPSTREAM jumu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5809317	2L_5809317_SNP [dm3] 2L_5809317_SNP [dm6]	C	A	2.098e^-4	0.888	UPSTREAM CR44575 DOWNSTREAM CG11034 INTERGENIC
3L	9636272	3L_9636272_SNP [dm3] 3L_9643172_SNP [dm6]	T	A	2.099e^-4	0.888	UPSTREAM CG33696 INTRON fry
3R	14053009	3R_14053009_DEL [dm3] 3R_18227287_DEL [dm6]	AG	A	2.100e^-4	0.888	INTRON Mdh2
2R	8620474	2R_8620474_SNP [dm3] 2R_12732969_SNP [dm6]	C	A	2.100e^-4	0.888	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6265545	2L_6265545_SNP [dm3] 2L_6265545_SNP [dm6]	G	T	2.110e^-4	0.888	INTRON Ddr
2L	1018419	2L_1018419_SNP [dm3] 2L_1018419_SNP [dm6]	T	G	2.112e^-4	0.888	INTRON IA-2
2L	3332836	2L_3332836_SNP [dm3] 2L_3332836_SNP [dm6]	G	A	2.114e^-4	0.888	UTR_5_PRIME CG15408 UTR_3_PRIME CG3285	TF binding site mE1_TFBS_cad
3L	22743591	3L_22743591_SNP [dm3] 3L_22750491_SNP [dm6]	C	T	2.116e^-4	0.888	INTRON SPoCk	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	5786230	2L_5786230_SNP [dm3] 2L_5786230_SNP [dm6]	G	T	2.117e^-4	0.888	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	13344622	X_13344622_SNP [dm3] X_13450589_SNP [dm6]	A	G	2.117e^-4	0.888	INTRON Neto
3R	26273100	3R_26273100_SNP [dm3] 3R_30447378_SNP [dm6]	A	G	2.117e^-4	0.888	INTRON aralar1	TF binding site mE1_TFBS_HSA
3R	25451307	3R_25451307_SNP [dm3] 3R_29625585_SNP [dm6]	C	G	2.122e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11137091	2R_11137091_SNP [dm3] 2R_15249586_SNP [dm6]	T	C	2.129e^-4	0.888	INTRON scb	TF binding site mE1_TFBS_cad
3L	2284370	3L_2284370_SNP [dm3] 3L_2284370_SNP [dm6]	A	G	2.139e^-4	0.888	INTRON MsR2
X	4260013	X_4260013_SNP [dm3] X_4365980_SNP [dm6]	T	A	2.154e^-4	0.888	UPSTREAM CG3626 & 1 other DOWNSTREAM mir-303 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	13738866	3R_13738866_SNP [dm3] 3R_17913144_SNP [dm6]	T	G	2.154e^-4	0.888	INTRON Rim
3R	18673305	3R_18673305_SNP [dm3] 3R_22847583_SNP [dm6]	A	C	2.161e^-4	0.888	INTERGENIC
2R	20356000	2R_20356000_SNP [dm3] 2R_24468477_SNP [dm6]	G	A	2.164e^-4	0.888	INTRON CG13579
2R	9123016	2R_9123016_SNP [dm3] 2R_13235511_SNP [dm6]	T	G	2.166e^-4	0.888	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1703261	2L_1703261_SNP [dm3] 2L_1703261_SNP [dm6]	A	C	2.166e^-4	0.888	UTR_3_PRIME chinmo
3R	15313266	3R_15313266_SNP [dm3] 3R_19487544_SNP [dm6]	C	T	2.178e^-4	0.888	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14460714	3R_14460714_SNP [dm3] 3R_18634992_SNP [dm6]	T	C	2.191e^-4	0.888	INTRON qin & 1 other
X	20244523	X_20244523_SNP [dm3] X_20373496_SNP [dm6]	T	C	2.193e^-4	0.888	INTERGENIC
2L	6587294	2L_6587294_INS [dm3] 2L_6587294_INS [dm6]	T	TTTT	2.194e^-4	0.888	INTRON CG11319
3R	10415393	3R_10415393_SNP [dm3] 3R_14589671_SNP [dm6]	T	A	2.209e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6750846	2R_6750846_SNP [dm3] 2R_10863341_SNP [dm6]	A	G	2.212e^-4	0.888	INTRON CG30015
2L	13470769	2L_13470769_SNP [dm3] 2L_13470769_SNP [dm6]	G	A	2.213e^-4	0.888	INTRON CG42784
X	11138209	X_11138209_SNP [dm3] X_11244176_SNP [dm6]	C	G	2.214e^-4	0.888	INTRON CG44422
2R	16577745	2R_16577745_SNP [dm3] 2R_20690240_SNP [dm6]	T	A	2.216e^-4	0.888	INTERGENIC
2L	19214382	2L_19214382_SNP [dm3] 2L_19214382_SNP [dm6]	G	C	2.217e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_sens
3R	20126297	3R_20126297_SNP [dm3] 3R_24300575_SNP [dm6]	T	C	2.219e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
3R	21499699	3R_21499699_SNP [dm3] 3R_25673977_SNP [dm6]	A	T	2.226e^-4	0.888	INTRON Lgr3
3L	11418386	3L_11418386_SNP [dm3] 3L_11425286_SNP [dm6]	G	A	2.227e^-4	0.888	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
X	4259978	X_4259978_INS [dm3] X_4365945_INS [dm6]	T	TT	2.234e^-4	0.888	UPSTREAM CG3626 & 1 other DOWNSTREAM mir-303 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	3770825	X_3770825_SNP [dm3] X_3876792_SNP [dm6]	G	A	2.236e^-4	0.888	SYNONYMOUS_CODING CG2930
2L	14488722	2L_14488722_SNP [dm3] 2L_14488722_SNP [dm6]	C	A	2.241e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	487650	3L_487650_SNP [dm3] 3L_487650_SNP [dm6]	A	C	2.243e^-4	0.888	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2173099	2L_2173099_SNP [dm3] 2L_2173099_SNP [dm6]	C	T	2.247e^-4	0.888	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	1027614	2L_1027614_SNP [dm3] 2L_1027614_SNP [dm6]	C	A	2.248e^-4	0.888	UPSTREAM CG4375 INTRON IA-2
3L	7655316	3L_7655316_SNP [dm3] 3L_7662216_SNP [dm6]	C	T	2.254e^-4	0.888	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_sens
X	13141269	X_13141269_SNP [dm3] X_13247236_SNP [dm6]	A	G	2.254e^-4	0.888	INTRON mew
2L	14323352	2L_14323352_SNP [dm3] 2L_14323352_SNP [dm6]	A	T	2.257e^-4	0.888	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20126266	3R_20126266_INS [dm3] 3R_24300544_INS [dm6]	A	ATAAACA	2.266e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
2R	12035374	2R_12035374_SNP [dm3] 2R_16147869_SNP [dm6]	A	G	2.275e^-4	0.888	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20031864	2R_20031864_SNP [dm3] 2R_24144341_SNP [dm6]	A	G	2.278e^-4	0.888	INTRON Dat
3L	8061226	3L_8061226_SNP [dm3] 3L_8068126_SNP [dm6]	T	A	2.283e^-4	0.888	DOWNSTREAM tRNA:CR32363 & 1 other INTRON Ect4
2L	13316730	2L_13316730_INS [dm3] 2L_13316730_INS [dm6]	T	TA	2.284e^-4	0.888	INTRON CG43778
3L	9889000	3L_9889000_DEL [dm3] 3L_9895900_DEL [dm6]	CAC	C	2.300e^-4	0.888	INTRON CG6707
3L	10916952	3L_10916952_SNP [dm3] 3L_10923852_SNP [dm6]	A	C	2.312e^-4	0.888	INTERGENIC
3R	16330057	3R_16330057_SNP [dm3] 3R_20504335_SNP [dm6]	T	G	2.315e^-4	0.888	UPSTREAM MtnB & 1 other INTERGENIC
2L	8473631	2L_8473631_SNP [dm3] 2L_8473631_SNP [dm6]	T	G	2.320e^-4	0.888	INTRON d
X	9341007	X_9341007_SNP [dm3] X_9446974_SNP [dm6]	T	A	2.322e^-4	0.888	UPSTREAM CG44815 INTRON mgl
3L	13866422	3L_13866422_SNP [dm3] 3L_13873322_SNP [dm6]	T	C	2.325e^-4	0.888	INTRON dysc
3R	14595011	3R_14595011_DEL [dm3] 3R_18769289_DEL [dm6]	GCAT	G	2.327e^-4	0.888	INTRON CG7720	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	351323	3R_351323_SNP [dm3] 3R_4525601_SNP [dm6]	T	A	2.327e^-4	0.888	INTRON CG34357	transposable element FlyBase
2R	11139100	2R_11139100_SNP [dm3] 2R_15251595_SNP [dm6]	A	G	2.332e^-4	0.888	INTRON scb
3L	4517740	3L_4517740_SNP [dm3] 3L_4517740_SNP [dm6]	A	G	2.334e^-4	0.888	INTRON Tie
2R	6788078	2R_6788078_SNP [dm3] 2R_10900573_SNP [dm6]	A	G	2.335e^-4	0.888	INTERGENIC
3R	24234988	3R_24234988_DEL [dm3] 3R_28409266_DEL [dm6]	GTGTGAGTGTG...	G	2.340e^-4	0.888	INTERGENIC
2R	16241264	2R_16241264_INS [dm3] 2R_20353759_INS [dm6]	G	GG	2.344e^-4	0.888	DOWNSTREAM CG11192 INTERGENIC
3R	24378455	3R_24378455_DEL [dm3] 3R_28552733_DEL [dm6]	AA	A	2.350e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14009809	2L_14009809_SNP [dm3] 2L_14009809_SNP [dm6]	A	C	2.358e^-4	0.888	DOWNSTREAM CG42692 & 1 other INTERGENIC
3R	12471199	3R_12471199_SNP [dm3] 3R_16645477_SNP [dm6]	T	C	2.370e^-4	0.888	SYNONYMOUS_CODING CG10324 DOWNSTREAM CG10326
3R	20126185	3R_20126185_SNP [dm3] 3R_24300463_SNP [dm6]	T	C	2.376e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
3R	14645302	3R_14645302_SNP [dm3] 3R_18819580_SNP [dm6]	G	A	2.380e^-4	0.888	INTRON CG18208	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21444078	3R_21444078_SNP [dm3] 3R_25618356_SNP [dm6]	C	T	2.391e^-4	0.888	UPSTREAM CG5071 INTRON Npl4
3R	21444079	3R_21444079_SNP [dm3] 3R_25618357_SNP [dm6]	T	C	2.391e^-4	0.888	UPSTREAM CG5071 INTRON Npl4
2L	12312293	2L_12312293_SNP [dm3] 2L_12312293_SNP [dm6]	A	G	2.391e^-4	0.888	UTR_3_PRIME aret INTRON aret
3R	26273103	3R_26273103_SNP [dm3] 3R_30447381_SNP [dm6]	A	T	2.394e^-4	0.888	INTRON aralar1	TF binding site mE1_TFBS_HSA
3R	24200725	3R_24200725_SNP [dm3] 3R_28375003_SNP [dm6]	A	G	2.395e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14009811	2L_14009811_SNP [dm3] 2L_14009811_SNP [dm6]	T	A	2.399e^-4	0.888	DOWNSTREAM CG42692 & 1 other INTERGENIC
2L	9533507	2L_9533507_SNP [dm3] 2L_9533507_SNP [dm6]	G	A	2.407e^-4	0.888	SPLICE_SITE_REGION Oatp30B INTRON Oatp30B
2R	8620605	2R_8620605_INS [dm3] 2R_12733100_INS [dm6]	G	TTAATT	2.411e^-4	0.888	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8865000	2R_8865000_SNP [dm3] 2R_12977495_SNP [dm6]	C	A	2.412e^-4	0.888	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13843796	2R_13843796_SNP [dm3] 2R_17956291_SNP [dm6]	T	C	2.414e^-4	0.888	SYNONYMOUS_CODING PpY-55A DOWNSTREAM CR44418
3R	20126073	3R_20126073_INS [dm3] 3R_24300351_INS [dm6]	A	ACAGTTTGTATCTATTTATC...	2.429e^-4	0.888	INTRON crb
3R	10438368	3R_10438368_SNP [dm3] 3R_14612646_SNP [dm6]	C	T	2.441e^-4	0.888	INTRON CG14853
3L	9525475	3L_9525475_SNP [dm3] 3L_9532375_SNP [dm6]	T	C	2.443e^-4	0.888	DOWNSTREAM Or67a INTERGENIC
3R	16387661	3R_16387661_SNP [dm3] 3R_20561939_SNP [dm6]	C	T	2.449e^-4	0.888	DOWNSTREAM CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9387326	2L_9387326_DEL [dm3] 2L_9387326_DEL [dm6]	TGCTCCACCTAATTAATTAT...	C	2.450e^-4	0.888	UPSTREAM Aldh INTRON Shawl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	15191550	2R_15191550_SNP [dm3] 2R_19304045_SNP [dm6]	T	C	2.454e^-4	0.888	DOWNSTREAM Tab2 INTRON Tab2
2R	19616443	2R_19616443_SNP [dm3] 2R_23728920_SNP [dm6]	T	C	2.459e^-4	0.888	INTRON Sesn
X	20303632	X_20303632_SNP [dm3] X_20432605_SNP [dm6]	A	G	2.466e^-4	0.888	SYNONYMOUS_CODING mal
3R	14038916	3R_14038916_SNP [dm3] 3R_18213194_SNP [dm6]	C	T	2.472e^-4	0.888	INTRON CG7985	TF binding site mE1_TFBS_cad
X	15488838	X_15488838_SNP [dm3] X_15594805_SNP [dm6]	C	T	2.478e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	24374794	3R_24374794_SNP [dm3] 3R_28549072_SNP [dm6]	G	T	2.483e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7190707	2R_7190707_SNP [dm3] 2R_11303202_SNP [dm6]	G	A	2.492e^-4	0.888	UTR_5_PRIME CG7741 UPSTREAM CG7741 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21997079	3R_21997079_SNP [dm3] 3R_26171357_SNP [dm6]	A	G	2.495e^-4	0.888	UPSTREAM CG31323 INTRON CG31323
3R	16383076	3R_16383076_SNP [dm3] 3R_20557354_SNP [dm6]	T	C	2.495e^-4	0.888	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2866155	2L_2866155_SNP [dm3] 2L_2866155_SNP [dm6]	G	A	2.498e^-4	0.888	INTRON CG2991
3L	2634614	3L_2634614_SNP [dm3] 3L_2634614_SNP [dm6]	T	C	2.498e^-4	0.888	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	8284362	X_8284362_SNP [dm3] X_8390329_SNP [dm6]	A	G	2.506e^-4	0.888	DOWNSTREAM CG1387 INTERGENIC
3R	20126279	3R_20126279_SNP [dm3] 3R_24300557_SNP [dm6]	C	A	2.511e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
3L	12501432	3L_12501432_SNP [dm3] 3L_12508332_SNP [dm6]	C	T	2.512e^-4	0.888	UTR_3_PRIME sti UPSTREAM CG10654
3L	13182560	3L_13182560_SNP [dm3] 3L_13189460_SNP [dm6]	A	C	2.513e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1614781	2L_1614781_SNP [dm3] 2L_1614781_SNP [dm6]	G	C	2.518e^-4	0.888	UPSTREAM RFeSP INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20191482	2R_20191482_SNP [dm3] 2R_24303959_SNP [dm6]	T	C	2.519e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs
3R	11204329	3R_11204329_SNP [dm3] 3R_15378607_SNP [dm6]	A	C	2.527e^-4	0.888	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	24358103	3R_24358103_SNP [dm3] 3R_28532381_SNP [dm6]	T	C	2.528e^-4	0.888	INTRON Ppn	TF binding site mE1_TFBS_chinmo
2R	7627767	2R_7627767_SNP [dm3] 2R_11740262_SNP [dm6]	C	T	2.547e^-4	0.888	INTERGENIC
2L	19001409	2L_19001409_SNP [dm3] 2L_19001409_SNP [dm6]	C	A	2.548e^-4	0.888	INTRON CG31792
3L	18258364	3L_18258364_SNP [dm3] 3L_18265264_SNP [dm6]	A	C	2.553e^-4	0.888	INTERGENIC
2R	15132093	2R_15132093_SNP [dm3] 2R_19244588_SNP [dm6]	A	T	2.555e^-4	0.888	DOWNSTREAM cora INTERGENIC
3R	18159373	3R_18159373_SNP [dm3] 3R_22333651_SNP [dm6]	T	C	2.557e^-4	0.888	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG5388
2R	6539363	2R_6539363_SNP [dm3] 2R_10651858_SNP [dm6]	T	G	2.562e^-4	0.888	INTERGENIC
3R	22746509	3R_22746509_SNP [dm3] 3R_26920787_SNP [dm6]	T	C	2.566e^-4	0.888	INTRON sda
2R	9246546	2R_9246546_SNP [dm3] 2R_13359041_SNP [dm6]	G	C	2.566e^-4	0.888	INTERGENIC
3L	10250132	3L_10250132_SNP [dm3] 3L_10257032_SNP [dm6]	G	A	2.569e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4769157	2L_4769157_SNP [dm3] 2L_4769157_SNP [dm6]	T	A	2.570e^-4	0.888	INTRON CG15630
2L	6888415	2L_6888415_INS [dm3] 2L_6888415_INS [dm6]	G	GAG	2.573e^-4	0.888	INTRON Nlg2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18733299	3R_18733299_INS [dm3] 3R_22907577_INS [dm6]	A	ACA	2.575e^-4	0.888	INTRON klg
3L	7472393	3L_7472393_SNP [dm3] 3L_7479293_SNP [dm6]	A	T	2.578e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7472441	3L_7472441_SNP [dm3] 3L_7479341_SNP [dm6]	G	T	2.584e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10943692	3L_10943692_SNP [dm3] 3L_10950592_SNP [dm6]	T	A	2.585e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8788293	2R_8788293_SNP [dm3] 2R_12900788_SNP [dm6]	G	T	2.586e^-4	0.888	INTERGENIC
3R	14057097	3R_14057097_SNP [dm3] 3R_18231375_SNP [dm6]	C	T	2.594e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10916893	3L_10916893_SNP [dm3] 3L_10923793_SNP [dm6]	T	A	2.602e^-4	0.888	INTERGENIC
3L	13930687	3L_13930687_SNP [dm3] 3L_13937587_SNP [dm6]	G	A	2.614e^-4	0.888	INTERGENIC
3R	1299777	3R_1299777_SNP [dm3] 3R_5474055_SNP [dm6]	G	A	2.618e^-4	0.888	SYNONYMOUS_CODING Hdac3 UTR_3_PRIME CG45100 UPSTREAM Hcs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	7635068	3L_7635068_SNP [dm3] 3L_7641968_SNP [dm6]	G	A	2.622e^-4	0.888	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10689498	3L_10689498_SNP [dm3] 3L_10696398_SNP [dm6]	C	T	2.625e^-4	0.888	INTRON NijA
3R	10425216	3R_10425216_INS [dm3] 3R_14599494_INS [dm6]	T	TAT	2.627e^-4	0.888	INTRON stumps	TF binding site mE1_TFBS_cad
2L	621206	2L_621206_SNP [dm3] 2L_621206_SNP [dm6]	T	G	2.637e^-4	0.888	UPSTREAM lectin-21Cb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19875768	X_19875768_SNP [dm3] X_19981735_SNP [dm6]	G	A	2.639e^-4	0.888	INTERGENIC
3R	18673427	3R_18673427_SNP [dm3] 3R_22847705_SNP [dm6]	T	A	2.639e^-4	0.888	INTERGENIC
2R	4161264	2R_4161264_SNP [dm3] 2R_8273759_SNP [dm6]	T	C	2.640e^-4	0.888	INTERGENIC
3L	5481658	3L_5481658_DEL [dm3] 3L_5488558_DEL [dm6]	AA	A	2.652e^-4	0.888	INTERGENIC
2R	12388227	2R_12388227_SNP [dm3] 2R_16500722_SNP [dm6]	G	A	2.657e^-4	0.888	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4517825	3L_4517825_SNP [dm3] 3L_4517825_SNP [dm6]	C	A	2.664e^-4	0.888	INTRON Tie
3L	7294568	3L_7294568_SNP [dm3] 3L_7301468_SNP [dm6]	G	A	2.692e^-4	0.888	INTRON unc-13-4A
X	14267614	X_14267614_SNP [dm3] X_14373581_SNP [dm6]	C	A	2.695e^-4	0.888	INTRON dpr8
3R	14831008	3R_14831008_SNP [dm3] 3R_19005286_SNP [dm6]	A	T	2.707e^-4	0.888	INTRON gukh
3R	18021106	3R_18021106_SNP [dm3] 3R_22195384_SNP [dm6]	G	T	2.717e^-4	0.888	INTRON SKIP EXON CR45224	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5753918	2L_5753918_SNP [dm3] 2L_5753918_SNP [dm6]	G	C	2.720e^-4	0.888	INTRON CG11030
3R	24532580	3R_24532580_SNP [dm3] 3R_28706858_SNP [dm6]	C	T	2.729e^-4	0.888	INTRON htt
2R	9286449	2R_9286449_SNP [dm3] 2R_13398944_SNP [dm6]	C	A	2.730e^-4	0.888	SYNONYMOUS_CODING CG4744	TF binding site mE1_TFBS_cad
3L	7632942	3L_7632942_SNP [dm3] 3L_7639842_SNP [dm6]	T	C	2.734e^-4	0.888	UTR_3_PRIME CG33276 DOWNSTREAM CG33275 & 2 others
2L	16388255	2L_16388255_SNP [dm3] 2L_16388255_SNP [dm6]	G	A	2.734e^-4	0.888	INTERGENIC
2L	16405283	2L_16405283_SNP [dm3] 2L_16405283_SNP [dm6]	T	A	2.736e^-4	0.888	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9543760	2L_9543760_SNP [dm3] 2L_9543760_SNP [dm6]	G	A	2.752e^-4	0.888	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
3R	10415391	3R_10415391_SNP [dm3] 3R_14589669_SNP [dm6]	C	A	2.769e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17966037	2R_17966037_SNP [dm3] 2R_22078532_SNP [dm6]	G	A	2.774e^-4	0.888	UTR_3_PRIME GlcT-1
2R	16901950	2R_16901950_SNP [dm3] 2R_21014445_SNP [dm6]	G	T	2.775e^-4	0.888	SPLICE_SITE_REGION CG9346 INTRON CG9346
X	8019339	X_8019339_SNP [dm3] X_8125306_SNP [dm6]	C	T	2.778e^-4	0.888	INTRON cyr	TF binding site BDTNP1_TFBS_dl
2L	17914307	2L_17914307_SNP [dm3] 2L_17914307_SNP [dm6]	A	C	2.784e^-4	0.888	DOWNSTREAM CG43271 INTERGENIC
2R	19563373	2R_19563373_SNP [dm3] 2R_23675850_SNP [dm6]	G	A	2.787e^-4	0.888	SYNONYMOUS_CODING Pde8 UPSTREAM Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9122612	2R_9122612_SNP [dm3] 2R_13235107_SNP [dm6]	G	C	2.815e^-4	0.888	START_GAINED CG4670 UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	20987203	2R_20987203_SNP [dm3] 2R_25099680_SNP [dm6]	T	A	2.816e^-4	0.888	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	21090286	2R_21090286_SNP [dm3] 2R_25202763_SNP [dm6]	C	T	2.816e^-4	0.888	INTRON CG9380	TF binding site mE1_TFBS_D mE1_TFBS_Kr
2R	3650404	2R_3650404_SNP [dm3] 2R_7762899_SNP [dm6]	A	G	2.818e^-4	0.888	INTRON CG30497 & 1 other
2L	9123467	2L_9123467_INS [dm3] 2L_9123467_INS [dm6]	T	TTAAGGCATTT...	2.830e^-4	0.888	UPSTREAM CR44615 INTERGENIC
2L	4988906	2L_4988906_SNP [dm3] 2L_4988906_SNP [dm6]	A	T	2.835e^-4	0.888	INTRON CG34126
3R	21505172	3R_21505172_SNP [dm3] 3R_25679450_SNP [dm6]	C	G	2.846e^-4	0.888	SYNONYMOUS_CODING CG4743 UTR_3_PRIME CG5039 UPSTREAM CG4730
2L	13807752	2L_13807752_SNP [dm3] 2L_13807752_SNP [dm6]	T	C	2.846e^-4	0.888	DOWNSTREAM adat INTRON CAH1
2L	16298547	2L_16298547_SNP [dm3] 2L_16298547_SNP [dm6]	T	C	2.851e^-4	0.888	INTRON heix	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21500071	3R_21500071_SNP [dm3] 3R_25674349_SNP [dm6]	A	C	2.858e^-4	0.888	INTRON Lgr3
2L	9543477	2L_9543477_SNP [dm3] 2L_9543477_SNP [dm6]	A	G	2.860e^-4	0.888	SYNONYMOUS_STOP Cpr30B UPSTREAM CG13113 DOWNSTREAM CG17855
3L	16042080	3L_16042080_SNP [dm3] 3L_16048980_SNP [dm6]	C	A	2.860e^-4	0.888	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2316035	2L_2316035_INS [dm3] 2L_2316035_INS [dm6]	A	AGAGGGTCCGA...	2.860e^-4	0.888	INTRON CG9967 & 1 other
3R	18159028	3R_18159028_SNP [dm3] 3R_22333306_SNP [dm6]	G	A	2.862e^-4	0.888	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
X	14281320	X_14281320_SNP [dm3] X_14387287_SNP [dm6]	G	T	2.865e^-4	0.888	INTRON dpr8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1369027	2L_1369027_SNP [dm3] 2L_1369027_SNP [dm6]	G	C	2.872e^-4	0.888	UTR_3_PRIME CG14346
3L	8061216	3L_8061216_SNP [dm3] 3L_8068116_SNP [dm6]	C	A	2.878e^-4	0.888	DOWNSTREAM tRNA:CR32363 & 1 other INTRON Ect4
3L	4030046	3L_4030046_SNP [dm3] 3L_4030046_SNP [dm6]	A	C	2.878e^-4	0.888	SYNONYMOUS_CODING Gr64b UTR_5_PRIME Gr64c UPSTREAM Gr64c
3R	24147714	3R_24147714_SNP [dm3] 3R_28321992_SNP [dm6]	C	A	2.878e^-4	0.888	SYNONYMOUS_CODING larp	TF binding site mE1_TFBS_cad
2L	951498	2L_951498_SNP [dm3] 2L_951498_SNP [dm6]	G	A	2.882e^-4	0.888	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3R	20126166	3R_20126166_SNP [dm3] 3R_24300444_SNP [dm6]	A	C	2.884e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
3L	1395540	3L_1395540_SNP [dm3] 3L_1395540_SNP [dm6]	A	T	2.887e^-4	0.888	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13344611	X_13344611_SNP [dm3] X_13450578_SNP [dm6]	T	C	2.888e^-4	0.888	INTRON Neto
X	8625175	X_8625175_SNP [dm3] X_8731142_SNP [dm6]	T	A	2.895e^-4	0.888	INTERGENIC
2L	12263323	2L_12263323_SNP [dm3] 2L_12263323_SNP [dm6]	T	C	2.899e^-4	0.888	INTRON aret
2R	3508831	2R_3508831_SNP [dm3] 2R_7621326_SNP [dm6]	T	A	2.899e^-4	0.888	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8563107	2R_8563107_SNP [dm3] 2R_12675602_SNP [dm6]	T	A	2.900e^-4	0.888	UPSTREAM CG42708 INTRON CG42708
3R	9565314	3R_9565314_SNP [dm3] 3R_13739592_SNP [dm6]	G	A	2.909e^-4	0.888	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26502270	3R_26502270_SNP [dm3] 3R_30676548_SNP [dm6]	G	A	2.914e^-4	0.888	INTERGENIC
3L	7634942	3L_7634942_SNP [dm3] 3L_7641842_SNP [dm6]	C	G	2.920e^-4	0.888	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	10417620	3R_10417620_SNP [dm3] 3R_14591898_SNP [dm6]	G	A	2.931e^-4	0.888	UTR_5_PRIME stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8311607	3L_8311607_SNP [dm3] 3L_8318507_SNP [dm6]	C	T	2.935e^-4	0.888	DOWNSTREAM CG43059 INTERGENIC
3L	12305975	3L_12305975_SNP [dm3] 3L_12312875_SNP [dm6]	A	G	2.936e^-4	0.888	DOWNSTREAM CG44355 INTERGENIC
2R	20095704	2R_20095704_SNP [dm3] 2R_24208181_SNP [dm6]	G	T	2.937e^-4	0.888	NON_SYNONYMOUS_CODING CG11406
3R	14120244	3R_14120244_SNP [dm3] 3R_18294522_SNP [dm6]	T	C	2.946e^-4	0.888	INTRON l_3_05822
2L	1597816	2L_1597816_SNP [dm3] 2L_1597816_SNP [dm6]	C	T	2.954e^-4	0.888	INTRON haf & 1 other
2R	19455017	2R_19455017_SNP [dm3] 2R_23567494_SNP [dm6]	A	G	2.957e^-4	0.888	UPSTREAM apt INTRON apt
3R	24374922	3R_24374922_SNP [dm3] 3R_28549200_SNP [dm6]	A	G	2.959e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20126291	3R_20126291_SNP [dm3] 3R_24300569_SNP [dm6]	A	G	2.966e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
X	444383	X_444383_SNP [dm3] X_550350_SNP [dm6]	T	C	2.966e^-4	0.888	INTRON Appl
3L	3713186	3L_3713186_SNP [dm3] 3L_3713186_SNP [dm6]	T	G	2.975e^-4	0.888	UPSTREAM CG43089 INTERGENIC
2R	16577981	2R_16577981_SNP [dm3] 2R_20690476_SNP [dm6]	A	T	2.984e^-4	0.888	INTERGENIC
3R	10628058	3R_10628058_SNP [dm3] 3R_14802336_SNP [dm6]	A	G	2.995e^-4	0.888	SYNONYMOUS_CODING CG14857	TF binding site mE1_TFBS_cad
3R	10415385	3R_10415385_INS [dm3] 3R_14589663_INS [dm6]	T	TCTAA	3.002e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16715890	2R_16715890_SNP [dm3] 2R_20828385_SNP [dm6]	C	T	3.005e^-4	0.888	SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10324592	3L_10324592_SNP [dm3] 3L_10331492_SNP [dm6]	A	G	3.008e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12391253	2R_12391253_SNP [dm3] 2R_16503748_SNP [dm6]	A	G	3.020e^-4	0.888	INTRON Sema-2a
3L	4446115	3L_4446115_SNP [dm3] 3L_4446115_SNP [dm6]	C	T	3.023e^-4	0.888	UPSTREAM CG12607 EXON CR45739
2R	19359697	2R_19359697_SNP [dm3] 2R_23472174_SNP [dm6]	G	C	3.024e^-4	0.888	UPSTREAM Or59b DOWNSTREAM Or59c INTRON CG43795
3R	18673113	3R_18673113_SNP [dm3] 3R_22847391_SNP [dm6]	A	C	3.027e^-4	0.888	INTERGENIC
2L	16551751	2L_16551751_SNP [dm3] 2L_16551751_SNP [dm6]	T	C	3.031e^-4	0.888	INTRON CG42389	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	7623396	3L_7623396_SNP [dm3] 3L_7630296_SNP [dm6]	C	G	3.033e^-4	0.888	INTRON CG33275
3L	7623558	3L_7623558_SNP [dm3] 3L_7630458_SNP [dm6]	T	C	3.033e^-4	0.888	INTRON CG33275
2L	9536527	2L_9536527_SNP [dm3] 2L_9536527_SNP [dm6]	A	G	3.034e^-4	0.888	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
3R	3448871	3R_3448871_INS [dm3] 3R_7623149_INS [dm6]	A	AAT	3.041e^-4	0.888	INTRON CG34127	TF binding site mE1_TFBS_inv
2L	18000633	2L_18000633_SNP [dm3] 2L_18000633_SNP [dm6]	T	C	3.044e^-4	0.888	INTERGENIC
3R	16145843	3R_16145843_SNP [dm3] 3R_20320121_SNP [dm6]	T	C	3.046e^-4	0.888	INTRON CG42668
3L	13393981	3L_13393981_SNP [dm3] 3L_13400881_SNP [dm6]	C	T	3.050e^-4	0.888	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13805096	2L_13805096_SNP [dm3] 2L_13805096_SNP [dm6]	C	A	3.050e^-4	0.888	INTRON CAH1	TF binding site mE1_TFBS_HSA
3R	16145762	3R_16145762_SNP [dm3] 3R_20320040_SNP [dm6]	C	T	3.056e^-4	0.888	INTRON CG42668
3R	25451318	3R_25451318_SNP [dm3] 3R_29625596_SNP [dm6]	C	G	3.060e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14974493	2R_14974493_SNP [dm3] 2R_19086988_SNP [dm6]	C	T	3.067e^-4	0.888	INTRON 5-HT1A
3R	10612069	3R_10612069_SNP [dm3] 3R_14786347_SNP [dm6]	T	A	3.070e^-4	0.888	INTRON jvl
3L	10164066	3L_10164066_SNP [dm3] 3L_10170966_SNP [dm6]	G	A	3.071e^-4	0.888	INTRON dpr10
2R	9524402	2R_9524402_SNP [dm3] 2R_13636897_SNP [dm6]	A	T	3.071e^-4	0.888	INTRON fas
3L	10942671	3L_10942671_SNP [dm3] 3L_10949571_SNP [dm6]	C	G	3.072e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16904698	2R_16904698_SNP [dm3] 2R_21017193_SNP [dm6]	C	T	3.084e^-4	0.888	NON_SYNONYMOUS_CODING CG3295 UPSTREAM RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13809889	2L_13809889_SNP [dm3] 2L_13809889_SNP [dm6]	C	T	3.085e^-4	0.888	UTR_3_PRIME adat & 1 other DOWNSTREAM adat
2L	9543600	2L_9543600_SNP [dm3] 2L_9543600_SNP [dm6]	C	A	3.085e^-4	0.888	UTR_3_PRIME Cpr30B UPSTREAM CG13113
3R	10438359	3R_10438359_SNP [dm3] 3R_14612637_SNP [dm6]	T	C	3.086e^-4	0.888	INTRON CG14853
3R	10370352	3R_10370352_SNP [dm3] 3R_14544630_SNP [dm6]	G	A	3.092e^-4	0.888	INTRON Pde6
X	9341031	X_9341031_SNP [dm3] X_9446998_SNP [dm6]	T	C	3.104e^-4	0.888	UPSTREAM CG44815 INTRON mgl
2L	18727775	2L_18727775_SNP [dm3] 2L_18727775_SNP [dm6]	C	T	3.108e^-4	0.888	INTRON CG10348
2L	2019372	2L_2019372_SNP [dm3] 2L_2019372_SNP [dm6]	A	G	3.110e^-4	0.888	INTRON CG4238	TF binding site BDTNP1_TFBS_da
2L	1978861	2L_1978861_SNP [dm3] 2L_1978861_SNP [dm6]	T	C	3.114e^-4	0.888	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22896778	3R_22896778_DEL [dm3] 3R_27071056_DEL [dm6]	GG	G	3.115e^-4	0.888	UPSTREAM spz INTERGENIC
3R	18159145	3R_18159145_SNP [dm3] 3R_22333423_SNP [dm6]	T	C	3.116e^-4	0.888	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
3L	2636143	3L_2636143_SNP [dm3] 3L_2636143_SNP [dm6]	G	C	3.116e^-4	0.888	UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24283038	3R_24283038_SNP [dm3] 3R_28457316_SNP [dm6]	G	A	3.118e^-4	0.888	INTRON beat-VI
2R	9524485	2R_9524485_SNP [dm3] 2R_13636980_SNP [dm6]	T	G	3.124e^-4	0.888	INTRON fas
2R	11029504	2R_11029504_SNP [dm3] 2R_15141999_SNP [dm6]	G	A	3.125e^-4	0.888	SYNONYMOUS_CODING chn UTR_3_PRIME chn	TF binding site mE1_TFBS_cad
3R	10438350	3R_10438350_SNP [dm3] 3R_14612628_SNP [dm6]	T	C	3.136e^-4	0.888	INTRON CG14853
3R	17631364	3R_17631364_SNP [dm3] 3R_21805642_SNP [dm6]	T	G	3.140e^-4	0.888	INTRON CASK
3L	7634884	3L_7634884_SNP [dm3] 3L_7641784_SNP [dm6]	G	A	3.152e^-4	0.888	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	9456571	2R_9456571_SNP [dm3] 2R_13569066_SNP [dm6]	T	C	3.153e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	4393222	2L_4393222_SNP [dm3] 2L_4393222_SNP [dm6]	G	T	3.155e^-4	0.888	UPSTREAM l_2_k05819 DOWNSTREAM Tps1 INTRON CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7371111	2R_7371111_SNP [dm3] 2R_11483606_SNP [dm6]	G	C	3.156e^-4	0.888	INTRON inv
3R	23211301	3R_23211301_DEL [dm3] 3R_27385579_DEL [dm6]	TTT	T	3.158e^-4	0.888	INTRON side
3R	14053087	3R_14053087_SNP [dm3] 3R_18227365_SNP [dm6]	A	G	3.158e^-4	0.888	INTRON Mdh2
2L	6322688	2L_6322688_SNP [dm3] 2L_6322688_SNP [dm6]	C	T	3.159e^-4	0.888	UTR_3_PRIME Ddr
2R	6706012	2R_6706012_SNP [dm3] 2R_10818507_SNP [dm6]	A	G	3.165e^-4	0.888	INTRON dgo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19874837	2R_19874837_SNP [dm3] 2R_23987314_SNP [dm6]	G	A	3.182e^-4	0.888	DOWNSTREAM CG30178 INTRON Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	18242533	3L_18242533_SNP [dm3] 3L_18249433_SNP [dm6]	A	T	3.184e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3310801	3L_3310801_SNP [dm3] 3L_3310801_SNP [dm6]	T	C	3.185e^-4	0.888	SYNONYMOUS_CODING ZnT63C
X	3196712	X_3196712_SNP [dm3] X_3302679_SNP [dm6]	C	T	3.187e^-4	0.888	INTRON dnc
2R	4762814	2R_4762814_SNP [dm3] 2R_8875309_SNP [dm6]	A	T	3.188e^-4	0.888	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	18673288	3R_18673288_SNP [dm3] 3R_22847566_SNP [dm6]	C	A	3.189e^-4	0.888	INTERGENIC
3L	6765734	3L_6765734_SNP [dm3] 3L_6772634_SNP [dm6]	G	T	3.190e^-4	0.888	INTERGENIC
3R	3997394	3R_3997394_SNP [dm3] 3R_8171672_SNP [dm6]	A	G	3.190e^-4	0.888	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1047552	X_1047552_SNP [dm3] X_1153519_SNP [dm6]	C	A	3.196e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19602552	2R_19602552_SNP [dm3] 2R_23715029_SNP [dm6]	A	G	3.215e^-4	0.888	INTRON Sesn
3L	10148309	3L_10148309_SNP [dm3] 3L_10155209_SNP [dm6]	C	T	3.218e^-4	0.888	INTRON dpr10
3R	19535963	3R_19535963_SNP [dm3] 3R_23710241_SNP [dm6]	T	C	3.223e^-4	0.888	SYNONYMOUS_CODING CG10301
3L	18250949	3L_18250949_DEL [dm3] 3L_18257849_DEL [dm6]	TCTATGACT	T	3.232e^-4	0.888	INTERGENIC
2R	14277744	2R_14277744_SNP [dm3] 2R_18390239_SNP [dm6]	G	T	3.241e^-4	0.888	UTR_3_PRIME CG15065 DOWNSTREAM CG15068 & 1 other
3R	19573365	3R_19573365_SNP [dm3] 3R_23747643_SNP [dm6]	C	T	3.243e^-4	0.888	INTRON Hmgcr	TF binding site mE1_TFBS_chinmo
2R	12450194	2R_12450194_SNP [dm3] 2R_16562689_SNP [dm6]	A	G	3.244e^-4	0.888	INTRON DAT
2R	20139954	2R_20139954_DEL [dm3] 2R_24252431_DEL [dm6]	AAGTTATA	A	3.252e^-4	0.888	INTRON nord
2L	8846661	2L_8846661_SNP [dm3] 2L_8846661_SNP [dm6]	C	A	3.253e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16383883	3R_16383883_SNP [dm3] 3R_20558161_SNP [dm6]	G	A	3.258e^-4	0.888	UPSTREAM CG5180 & 1 other INTRON CG5180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
2L	4395304	2L_4395304_SNP [dm3] 2L_4395304_SNP [dm6]	A	T	3.261e^-4	0.888	NON_SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12388288	2R_12388288_SNP [dm3] 2R_16500783_SNP [dm6]	G	A	3.261e^-4	0.888	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6325413	2L_6325413_SNP [dm3] 2L_6325413_SNP [dm6]	C	T	3.262e^-4	0.888	SYNONYMOUS_CODING PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7472440	3L_7472440_SNP [dm3] 3L_7479340_SNP [dm6]	T	A	3.268e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19767695	2L_19767695_SNP [dm3] 2L_19767695_SNP [dm6]	G	C	3.284e^-4	0.888	INTRON bsh	TF binding site mE1_TFBS_cad
3L	8809925	3L_8809925_SNP [dm3] 3L_8816825_SNP [dm6]	G	A	3.294e^-4	0.888	INTERGENIC
2R	8620564	2R_8620564_SNP [dm3] 2R_12733059_SNP [dm6]	C	A	3.297e^-4	0.888	INTRON CG42663	TF binding site mE1_TFBS_HSA
2L	13076238	2L_13076238_INS [dm3] 2L_13076238_INS [dm6]	T	TGATCTTT	3.300e^-4	0.888	INTERGENIC
2L	15373701	2L_15373701_SNP [dm3] 2L_15373701_SNP [dm6]	G	A	3.302e^-4	0.888	INTERGENIC
2L	9121160	2L_9121160_SNP [dm3] 2L_9121160_SNP [dm6]	A	C	3.318e^-4	0.888	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	19144194	3L_19144194_SNP [dm3] 3L_19151094_SNP [dm6]	G	C	3.321e^-4	0.888	INTRON fz2
2L	2393490	2L_2393490_SNP [dm3] 2L_2393490_SNP [dm6]	T	G	3.323e^-4	0.888	INTRON VGlut
2L	19794841	2L_19794841_SNP [dm3] 2L_19794841_SNP [dm6]	G	A	3.324e^-4	0.888	NON_SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
2L	620913	2L_620913_SNP [dm3] 2L_620913_SNP [dm6]	T	C	3.325e^-4	0.888	SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10364901	3R_10364901_SNP [dm3] 3R_14539179_SNP [dm6]	T	G	3.329e^-4	0.888	INTRON Pde6
X	10886198	X_10886198_DEL [dm3] X_10992165_DEL [dm6]	TT	T	3.330e^-4	0.888	INTRON CG42339
X	11041134	X_11041134_SNP [dm3] X_11147101_SNP [dm6]	A	T	3.331e^-4	0.888	UPSTREAM Ran INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14927866	3L_14927866_SNP [dm3] 3L_14934766_SNP [dm6]	T	C	3.333e^-4	0.888	INTRON DCX-EMAP
2L	4891717	2L_4891717_SNP [dm3] 2L_4891717_SNP [dm6]	G	T	3.337e^-4	0.888	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2847599	3R_2847599_DEL [dm3] 3R_7021877_DEL [dm6]	TATAAAATCTTAGACTTAT...	T	3.338e^-4	0.888	INTERGENIC
2R	15190416	2R_15190416_SNP [dm3] 2R_19302911_SNP [dm6]	T	A	3.342e^-4	0.888	INTRON Tab2	TF binding site mE1_TFBS_chinmo
X	20912577	X_20912577_SNP [dm3] X_21041550_SNP [dm6]	T	C	3.343e^-4	0.888	UPSTREAM CG15449 & 1 other DOWNSTREAM Ntf-2 INTERGENIC
3L	18258522	3L_18258522_SNP [dm3] 3L_18265422_SNP [dm6]	T	A	3.344e^-4	0.888	INTERGENIC
2R	19084834	2R_19084834_SNP [dm3] 2R_23197311_SNP [dm6]	C	G	3.353e^-4	0.888	INTRON CG34371	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12907326	X_12907326_SNP [dm3] X_13013293_SNP [dm6]	G	A	3.354e^-4	0.888	INTRON rad
2R	9791270	2R_9791270_SNP [dm3] 2R_13903765_SNP [dm6]	C	A	3.361e^-4	0.888	INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7472419	3L_7472419_SNP [dm3] 3L_7479319_SNP [dm6]	G	A	3.362e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7140324	3L_7140324_SNP [dm3] 3L_7147224_SNP [dm6]	A	T	3.363e^-4	0.888	SYNONYMOUS_CODING corn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4392059	2L_4392059_SNP [dm3] 2L_4392059_SNP [dm6]	C	T	3.364e^-4	0.888	SYNONYMOUS_CODING Tps1 DOWNSTREAM CG3652	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16357952	3L_16357952_SNP [dm3] 3L_16364852_SNP [dm6]	A	G	3.374e^-4	0.888	UPSTREAM Cpr72Eb INTERGENIC
2L	9427192	2L_9427192_SNP [dm3] 2L_9427192_SNP [dm6]	T	C	3.380e^-4	0.888	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21050573	3L_21050573_SNP [dm3] 3L_21057473_SNP [dm6]	T	A	3.391e^-4	0.888	INTRON siz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	19772133	2L_19772133_SNP [dm3] 2L_19772133_SNP [dm6]	C	T	3.399e^-4	0.888	INTERGENIC
X	8947852	X_8947852_SNP [dm3] X_9053819_SNP [dm6]	T	C	3.405e^-4	0.888	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
3L	14930667	3L_14930667_SNP [dm3] 3L_14937567_SNP [dm6]	A	T	3.419e^-4	0.888	INTRON DCX-EMAP
3L	6590497	3L_6590497_SNP [dm3] 3L_6597397_SNP [dm6]	C	T	3.419e^-4	0.888	SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
2L	860950	2L_860950_SNP [dm3] 2L_860950_SNP [dm6]	T	G	3.421e^-4	0.888	SYNONYMOUS_CODING CG13950 DOWNSTREAM aru	TF binding site mE1_TFBS_chinmo
X	14086972	X_14086972_DEL [dm3] X_14192939_DEL [dm6]	GGGCA	ATC	3.422e^-4	0.888	UPSTREAM CG13403 & 1 other INTERGENIC
X	13540677	X_13540677_SNP [dm3] X_13646644_SNP [dm6]	G	A	3.423e^-4	0.888	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9123474	2L_9123474_SNP [dm3] 2L_9123474_SNP [dm6]	T	A	3.425e^-4	0.888	UPSTREAM CR44615 INTERGENIC
2L	3861352	2L_3861352_SNP [dm3] 2L_3861352_SNP [dm6]	G	A	3.429e^-4	0.888	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	20126273	3R_20126273_DEL [dm3] 3R_24300551_DEL [dm6]	TT	T	3.439e^-4	0.888	INTRON crb	TF binding site BDTNP1_TFBS_dl
3L	4750350	3L_4750350_DEL [dm3] 3L_4750350_DEL [dm6]	TCCTGGTT	T	3.440e^-4	0.888	INTRON RhoGEF64C
3R	7131675	3R_7131675_DEL [dm3] 3R_11305953_DEL [dm6]	AG	A	3.442e^-4	0.888	UPSTREAM CR31386 INTERGENIC
3R	3997393	3R_3997393_SNP [dm3] 3R_8171671_SNP [dm6]	T	A	3.446e^-4	0.888	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14266289	X_14266289_SNP [dm3] X_14372256_SNP [dm6]	A	G	3.451e^-4	0.888	INTRON dpr8
3L	18841333	3L_18841333_SNP [dm3] 3L_18848233_SNP [dm6]	C	A	3.454e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	7256419	2L_7256419_SNP [dm3] 2L_7256419_SNP [dm6]	T	A	3.460e^-4	0.888	INTRON Wnt4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	20285832	3R_20285832_DEL [dm3] 3R_24460110_DEL [dm6]	ACAA	A	3.474e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16240818	2R_16240818_SNP [dm3] 2R_20353313_SNP [dm6]	A	G	3.504e^-4	0.888	DOWNSTREAM CG11192 INTERGENIC
X	5481791	X_5481791_SNP [dm3] X_5587758_SNP [dm6]	C	A	3.509e^-4	0.888	INTERGENIC
X	10864138	X_10864138_SNP [dm3] X_10970105_SNP [dm6]	G	A	3.517e^-4	0.888	INTRON CG42339
2R	12637720	2R_12637720_SNP [dm3] 2R_16750215_SNP [dm6]	A	G	3.518e^-4	0.888	UPSTREAM Acp53C14b DOWNSTREAM Acp53C14c INTRON Acp53Ea
3L	6981321	3L_6981321_SNP [dm3] 3L_6988221_SNP [dm6]	A	T	3.519e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
2R	16200908	2R_16200908_SNP [dm3] 2R_20313403_SNP [dm6]	G	A	3.519e^-4	0.888	UTR_5_PRIME CG13868	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13808002	2L_13808002_SNP [dm3] 2L_13808002_SNP [dm6]	T	C	3.519e^-4	0.888	DOWNSTREAM adat INTRON CAH1
3L	22604943	3L_22604943_DEL [dm3] 3L_22611843_DEL [dm6]	AC	T	3.523e^-4	0.888	INTRON CG14459
2L	621284	2L_621284_SNP [dm3] 2L_621284_SNP [dm6]	A	G	3.530e^-4	0.888	UPSTREAM lectin-21Cb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11268054	3L_11268054_SNP [dm3] 3L_11274954_SNP [dm6]	T	A	3.532e^-4	0.888	UPSTREAM CR44720 INTERGENIC
3R	22897462	3R_22897462_SNP [dm3] 3R_27071740_SNP [dm6]	T	A	3.535e^-4	0.888	INTERGENIC
3R	24293334	3R_24293334_SNP [dm3] 3R_28467612_SNP [dm6]	G	T	3.537e^-4	0.888	INTRON beat-VI
3R	9533721	3R_9533721_SNP [dm3] 3R_13707999_SNP [dm6]	G	C	3.553e^-4	0.888	SYNONYMOUS_CODING Adgf-C	TF binding site mE1_TFBS_cad
X	11782218	X_11782218_SNP [dm3] X_11888185_SNP [dm6]	G	C	3.561e^-4	0.888	UTR_3_PRIME SelG UPSTREAM CG1840	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8624526	3R_8624526_SNP [dm3] 3R_12798804_SNP [dm6]	C	T	3.565e^-4	0.888	INTERGENIC
2R	1531953	2R_1531953_SNP [dm3] 2R_5644448_SNP [dm6]	T	G	3.571e^-4	0.888	INTRON CG11665
2L	2505971	2L_2505971_SNP [dm3] 2L_2505971_SNP [dm6]	C	T	3.575e^-4	0.888	INTERGENIC
2L	4866362	2L_4866362_SNP [dm3] 2L_4866362_SNP [dm6]	T	A	3.583e^-4	0.888	INTRON pog
2L	19796124	2L_19796124_SNP [dm3] 2L_19796124_SNP [dm6]	A	G	3.588e^-4	0.888	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	18159163	3R_18159163_SNP [dm3] 3R_22333441_SNP [dm6]	A	G	3.596e^-4	0.888	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
2R	14943883	2R_14943883_SNP [dm3] 2R_19056378_SNP [dm6]	T	C	3.596e^-4	0.888	UPSTREAM CG15116 INTERGENIC
2L	9542548	2L_9542548_SNP [dm3] 2L_9542548_SNP [dm6]	T	A	3.599e^-4	0.888	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
2L	19796189	2L_19796189_SNP [dm3] 2L_19796189_SNP [dm6]	A	T	3.600e^-4	0.888	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	13076198	2L_13076198_SNP [dm3] 2L_13076198_SNP [dm6]	T	C	3.600e^-4	0.888	INTERGENIC
3R	13497187	3R_13497187_SNP [dm3] 3R_17671465_SNP [dm6]	G	A	3.601e^-4	0.888	NON_SYNONYMOUS_CODING ald UPSTREAM CG7523
2L	7491176	2L_7491176_SNP [dm3] 2L_7491176_SNP [dm6]	C	T	3.609e^-4	0.888	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7634622	3L_7634622_SNP [dm3] 3L_7641522_SNP [dm6]	A	G	3.620e^-4	0.888	NON_SYNONYMOUS_CODING CG7506	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	8540893	2R_8540893_SNP [dm3] 2R_12653388_SNP [dm6]	A	G	3.625e^-4	0.888	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8778
2L	13235792	2L_13235792_SNP [dm3] 2L_13235792_SNP [dm6]	A	G	3.631e^-4	0.888	UPSTREAM CG5867 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18324471	3L_18324471_SNP [dm3] 3L_18331371_SNP [dm6]	A	G	3.636e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8009554	2L_8009554_SNP [dm3] 2L_8009554_SNP [dm6]	C	T	3.641e^-4	0.888	UPSTREAM CG12560 DOWNSTREAM CG34010 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	6175469	2L_6175469_SNP [dm3] 2L_6175469_SNP [dm6]	A	T	3.643e^-4	0.888	INTERGENIC
3L	4517846	3L_4517846_SNP [dm3] 3L_4517846_SNP [dm6]	C	G	3.644e^-4	0.888	INTRON Tie
3R	24250380	3R_24250380_INS [dm3] 3R_28424658_INS [dm6]	G	GC	3.645e^-4	0.888	INTRON beat-VI
3R	2843607	3R_2843607_SNP [dm3] 3R_7017885_SNP [dm6]	C	T	3.648e^-4	0.888	INTERGENIC
3R	14052957	3R_14052957_SNP [dm3] 3R_18227235_SNP [dm6]	T	C	3.648e^-4	0.888	INTRON Mdh2
X	9729801	X_9729801_SNP [dm3] X_9835768_SNP [dm6]	A	T	3.651e^-4	0.888	INTRON CG32698
2L	19723115	2L_19723115_SNP [dm3] 2L_19723115_SNP [dm6]	A	G	3.658e^-4	0.888	INTRON Lar
2R	12388270	2R_12388270_SNP [dm3] 2R_16500765_SNP [dm6]	C	A	3.658e^-4	0.888	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
X	10269852	X_10269852_SNP [dm3] X_10375819_SNP [dm6]	G	A	3.660e^-4	0.888	NON_SYNONYMOUS_CODING CG2898 UPSTREAM CG32686 DOWNSTREAM CG32681 INTRON CG17841	TF binding site mE1_TFBS_chinmo
3L	7635051	3L_7635051_SNP [dm3] 3L_7641951_SNP [dm6]	C	T	3.662e^-4	0.888	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	744978	2L_744978_SNP [dm3] 2L_744978_SNP [dm6]	C	T	3.665e^-4	0.888	UPSTREAM Eaat2 INTERGENIC
2L	744979	2L_744979_SNP [dm3] 2L_744979_SNP [dm6]	A	C	3.665e^-4	0.888	UPSTREAM Eaat2 INTERGENIC
2L	10063942	2L_10063942_DEL [dm3] 2L_10063942_DEL [dm6]	TGAAT	T	3.667e^-4	0.888	DOWNSTREAM CG44153 & 1 other INTERGENIC
X	20946328	X_20946328_SNP [dm3] X_21075301_SNP [dm6]	T	A	3.670e^-4	0.888	INTRON bves
2L	1566844	2L_1566844_SNP [dm3] 2L_1566844_SNP [dm6]	G	A	3.685e^-4	0.888	INTRON haf
2L	9542466	2L_9542466_SNP [dm3] 2L_9542466_SNP [dm6]	A	G	3.689e^-4	0.888	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
3L	6590515	3L_6590515_SNP [dm3] 3L_6597415_SNP [dm6]	A	G	3.690e^-4	0.888	SYNONYMOUS_CODING ndl	TF binding site mE1_TFBS_sens
3R	16311157	3R_16311157_SNP [dm3] 3R_20485435_SNP [dm6]	T	C	3.695e^-4	0.888	UPSTREAM Gfrl DOWNSTREAM CR44401 EXON CR44400
3L	22439367	3L_22439367_INS [dm3] 3L_22446267_INS [dm6]	C	CC	3.695e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6151468	2L_6151468_SNP [dm3] 2L_6151468_SNP [dm6]	G	T	3.714e^-4	0.888	UPSTREAM Muc26B INTERGENIC
2L	7222630	2L_7222630_SNP [dm3] 2L_7222630_SNP [dm6]	G	A	3.715e^-4	0.888	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14122495	X_14122495_SNP [dm3] X_14228462_SNP [dm6]	G	A	3.719e^-4	0.888	DOWNSTREAM mRpL38 INTRON CG42271	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5798863	2L_5798863_SNP [dm3] 2L_5798863_SNP [dm6]	A	C	3.720e^-4	0.888	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	1489817	2L_1489817_SNP [dm3] 2L_1489817_SNP [dm6]	G	A	3.724e^-4	0.888	INTERGENIC
2L	1509433	2L_1509433_SNP [dm3] 2L_1509433_SNP [dm6]	C	T	3.732e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	23959378	3L_23959378_INS [dm3] 3L_23966278_INS [dm6]	A	ATATG	3.739e^-4	0.888	INTRON CG40470
3R	7139845	3R_7139845_SNP [dm3] 3R_11314123_SNP [dm6]	C	T	3.745e^-4	0.888	INTERGENIC
X	8292754	X_8292754_SNP [dm3] X_8398721_SNP [dm6]	T	A	3.748e^-4	0.888	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9542492	2L_9542492_SNP [dm3] 2L_9542492_SNP [dm6]	T	C	3.750e^-4	0.888	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
X	15971730	X_15971730_INS [dm3] X_16077697_INS [dm6]	T	TAT	3.752e^-4	0.888	UTR_3_PRIME Tob DOWNSTREAM Tob
2L	19773355	2L_19773355_SNP [dm3] 2L_19773355_SNP [dm6]	A	T	3.754e^-4	0.888	INTERGENIC
2L	9542483	2L_9542483_SNP [dm3] 2L_9542483_SNP [dm6]	A	T	3.759e^-4	0.888	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
2L	3861275	2L_3861275_SNP [dm3] 2L_3861275_SNP [dm6]	T	A	3.762e^-4	0.888	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19804714	2L_19804714_SNP [dm3] 2L_19804714_SNP [dm6]	C	T	3.763e^-4	0.888	INTRON sick
X	15646939	X_15646939_SNP [dm3] X_15752906_SNP [dm6]	C	T	3.773e^-4	0.888	SYNONYMOUS_CODING Graf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19773428	2L_19773428_SNP [dm3] 2L_19773428_SNP [dm6]	G	A	3.774e^-4	0.888	INTERGENIC
2L	3399319	2L_3399319_SNP [dm3] 2L_3399319_SNP [dm6]	C	G	3.776e^-4	0.888	DOWNSTREAM CG34175 INTERGENIC
3L	1447144	3L_1447144_SNP [dm3] 3L_1447144_SNP [dm6]	C	T	3.778e^-4	0.888	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9341015	X_9341015_SNP [dm3] X_9446982_SNP [dm6]	T	A	3.779e^-4	0.888	UPSTREAM CG44815 INTRON mgl
3L	487647	3L_487647_SNP [dm3] 3L_487647_SNP [dm6]	T	A	3.782e^-4	0.888	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4190780	2R_4190780_SNP [dm3] 2R_8303275_SNP [dm6]	G	A	3.785e^-4	0.888	INTERGENIC
2L	5798856	2L_5798856_SNP [dm3] 2L_5798856_SNP [dm6]	A	T	3.793e^-4	0.888	INTRON CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	13235787	2L_13235787_INS [dm3] 2L_13235787_INS [dm6]	G	AGTGTGTAGA	3.795e^-4	0.888	UPSTREAM CG5867 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19771768	2L_19771768_DEL [dm3] 2L_19771768_DEL [dm6]	TG	T	3.795e^-4	0.888	INTERGENIC
3L	19648844	3L_19648844_SNP [dm3] 3L_19655744_SNP [dm6]	G	A	3.798e^-4	0.888	INTRON tey	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5753919	2L_5753919_SNP [dm3] 2L_5753919_SNP [dm6]	C	G	3.800e^-4	0.888	INTRON CG11030
2L	1287748	2L_1287748_SNP [dm3] 2L_1287748_SNP [dm6]	G	T	3.800e^-4	0.888	SPLICE_SITE_REGION robo3 INTRON robo3
3R	25129472	3R_25129472_SNP [dm3] 3R_29303750_SNP [dm6]	C	T	3.805e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11357216	2R_11357216_SNP [dm3] 2R_15469711_SNP [dm6]	T	A	3.809e^-4	0.888	UTR_3_PRIME CG43729
2R	14708926	2R_14708926_SNP [dm3] 2R_18821421_SNP [dm6]	T	C	3.818e^-4	0.888	UTR_3_PRIME Phb2 DOWNSTREAM CG15097 INTRON Phb2	TF binding site mE1_TFBS_cad
3R	14439110	3R_14439110_SNP [dm3] 3R_18613388_SNP [dm6]	A	T	3.825e^-4	0.888	INTRON qin & 1 other
2R	8724885	2R_8724885_SNP [dm3] 2R_12837380_SNP [dm6]	C	A	3.829e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3734466	2L_3734466_SNP [dm3] 2L_3734466_SNP [dm6]	C	T	3.832e^-4	0.888	INTRON CG10019
2R	6934306	2R_6934306_SNP [dm3] 2R_11046801_SNP [dm6]	A	T	3.847e^-4	0.888	INTRON luna
2R	21084846	2R_21084846_SNP [dm3] 2R_25197323_SNP [dm6]	A	G	3.856e^-4	0.888	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	10418352	3R_10418352_SNP [dm3] 3R_14592630_SNP [dm6]	G	T	3.880e^-4	0.888	INTRON stumps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9483410	3R_9483410_DEL [dm3] 3R_13657688_DEL [dm6]	AC	A	3.880e^-4	0.888	UTR_3_PRIME Hrb87F DOWNSTREAM Hrb87F INTRON Hrb87F
3R	10415412	3R_10415412_DEL [dm3] 3R_14589690_DEL [dm6]	ATG	A	3.881e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16383611	3R_16383611_SNP [dm3] 3R_20557889_SNP [dm6]	A	T	3.899e^-4	0.888	UPSTREAM CG5180 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	2530778	3L_2530778_SNP [dm3] 3L_2530778_SNP [dm6]	C	T	3.899e^-4	0.888	INTRON Spn	TF binding site mE1_TFBS_bab1
3R	19691873	3R_19691873_SNP [dm3] 3R_23866151_SNP [dm6]	C	A	3.900e^-4	0.888	INTRON Pli	TF binding site BDTNP1_TFBS_dl
X	15488816	X_15488816_DEL [dm3] X_15594783_DEL [dm6]	TTTCG	AA	3.900e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	10438418	3R_10438418_SNP [dm3] 3R_14612696_SNP [dm6]	G	T	3.904e^-4	0.888	INTRON CG14853
X	2584917	X_2584917_SNP [dm3] X_2690884_SNP [dm6]	A	C	3.905e^-4	0.888	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3L	7629579	3L_7629579_SNP [dm3] 3L_7636479_SNP [dm6]	A	G	3.909e^-4	0.888	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7629610	3L_7629610_SNP [dm3] 3L_7636510_SNP [dm6]	A	T	3.909e^-4	0.888	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13738860	3R_13738860_SNP [dm3] 3R_17913138_SNP [dm6]	A	T	3.909e^-4	0.888	INTRON Rim
3R	13489399	3R_13489399_SNP [dm3] 3R_17663677_SNP [dm6]	G	C	3.914e^-4	0.888	NON_SYNONYMOUS_CODING CG14322
3L	7472389	3L_7472389_SNP [dm3] 3L_7479289_SNP [dm6]	C	T	3.915e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6851522	2R_6851522_SNP [dm3] 2R_10964017_SNP [dm6]	G	C	3.923e^-4	0.888	INTERGENIC
3L	7413724	3L_7413724_SNP [dm3] 3L_7420624_SNP [dm6]	A	G	3.924e^-4	0.888	INTERGENIC
3R	992300	3R_992300_SNP [dm3] 3R_5166578_SNP [dm6]	T	G	3.930e^-4	0.888	INTRON dpr16	TF binding site mE1_TFBS_chinmo
3R	17952841	3R_17952841_SNP [dm3] 3R_22127119_SNP [dm6]	T	A	3.933e^-4	0.888	INTRON CG42390
3R	13497536	3R_13497536_SNP [dm3] 3R_17671814_SNP [dm6]	C	T	3.938e^-4	0.888	UPSTREAM CG7523 INTRON ald	TF binding site mE1_TFBS_sens
3L	7634944	3L_7634944_SNP [dm3] 3L_7641844_SNP [dm6]	A	T	3.941e^-4	0.888	UPSTREAM CG7506 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	7378223	2R_7378223_SNP [dm3] 2R_11490718_SNP [dm6]	G	C	3.943e^-4	0.888	INTRON inv
2L	10867692	2L_10867692_SNP [dm3] 2L_10867692_SNP [dm6]	A	T	3.956e^-4	0.888	INTERGENIC
3R	25485089	3R_25485089_SNP [dm3] 3R_29659367_SNP [dm6]	C	T	3.967e^-4	0.888	UTR_5_PRIME Dop1R2
X	8128482	X_8128482_SNP [dm3] X_8234449_SNP [dm6]	C	T	3.970e^-4	0.888	INTRON sdt	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	12035368	2R_12035368_SNP [dm3] 2R_16147863_SNP [dm6]	C	T	3.977e^-4	0.888	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	21089956	2R_21089956_SNP [dm3] 2R_25202433_SNP [dm6]	A	G	3.988e^-4	0.888	INTRON CG9380	TF binding site mE1_TFBS_Kr
2R	11579311	2R_11579311_SNP [dm3] 2R_15691806_SNP [dm6]	C	T	3.988e^-4	0.888	SYNONYMOUS_CODING CG30088 UPSTREAM CG30087 DOWNSTREAM CG30090 EXON CR44372
3L	5626380	3L_5626380_SNP [dm3] 3L_5633280_SNP [dm6]	C	T	3.988e^-4	0.888	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10419149	3R_10419149_SNP [dm3] 3R_14593427_SNP [dm6]	A	C	3.989e^-4	0.888	INTRON stumps	TF binding site mE1_TFBS_cad
3L	4446119	3L_4446119_SNP [dm3] 3L_4446119_SNP [dm6]	A	G	3.993e^-4	0.888	UPSTREAM CG12607 EXON CR45739
2L	1190943	2L_1190943_SNP [dm3] 2L_1190943_SNP [dm6]	A	G	4.000e^-4	0.888	INTRON CG5001
3R	25089290	3R_25089290_SNP [dm3] 3R_29263568_SNP [dm6]	G	C	4.001e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	20946283	X_20946283_SNP [dm3] X_21075256_SNP [dm6]	T	C	4.012e^-4	0.888	INTRON bves
3L	11605928	3L_11605928_SNP [dm3] 3L_11612828_SNP [dm6]	C	T	4.013e^-4	0.888	SYNONYMOUS_CODING Muc68Ca	TF binding site mE1_TFBS_sens
3R	7680219	3R_7680219_SNP [dm3] 3R_11854497_SNP [dm6]	G	T	4.013e^-4	0.888	INTRON CG6959
X	2584890	X_2584890_SNP [dm3] X_2690857_SNP [dm6]	C	T	4.023e^-4	0.888	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
2L	1666075	2L_1666075_SNP [dm3] 2L_1666075_SNP [dm6]	C	G	4.030e^-4	0.888	INTRON chinmo
2R	13612602	2R_13612602_SNP [dm3] 2R_17725097_SNP [dm6]	C	T	4.031e^-4	0.888	UTR_3_PRIME Snx16 DOWNSTREAM CG10933	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7615081	3L_7615081_SNP [dm3] 3L_7621981_SNP [dm6]	G	A	4.036e^-4	0.888	INTRON CG33275	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14057082	3R_14057082_SNP [dm3] 3R_18231360_SNP [dm6]	G	C	4.036e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14058399	3R_14058399_SNP [dm3] 3R_18232677_SNP [dm6]	A	G	4.038e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19132533	3R_19132533_SNP [dm3] 3R_23306811_SNP [dm6]	A	C	4.042e^-4	0.888	INTRON pnt
3R	16145728	3R_16145728_SNP [dm3] 3R_20320006_SNP [dm6]	C	A	4.060e^-4	0.888	SPLICE_SITE_REGION CG42668 INTRON CG42668
2L	8771844	2L_8771844_SNP [dm3] 2L_8771844_SNP [dm6]	T	C	4.070e^-4	0.888	SYNONYMOUS_CODING CG9465
3L	11097125	3L_11097125_SNP [dm3] 3L_11104025_SNP [dm6]	C	T	4.075e^-4	0.888	UPSTREAM Elo68alpha & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	2858256	2L_2858256_SNP [dm3] 2L_2858256_SNP [dm6]	C	T	4.084e^-4	0.888	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8956323	2L_8956323_SNP [dm3] 2L_8956323_SNP [dm6]	C	G	4.084e^-4	0.888	UPSTREAM CG31886 INTRON CG31886
3L	10139403	3L_10139403_SNP [dm3] 3L_10146303_SNP [dm6]	G	T	4.090e^-4	0.888	INTERGENIC
2R	11326624	2R_11326624_SNP [dm3] 2R_15439119_SNP [dm6]	C	A	4.093e^-4	0.888	INTRON CG43729
3R	10420700	3R_10420700_SNP [dm3] 3R_14594978_SNP [dm6]	G	A	4.097e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs
X	11866308	X_11866308_SNP [dm3] X_11972275_SNP [dm6]	T	C	4.098e^-4	0.888	INTRON cac
2L	18727769	2L_18727769_SNP [dm3] 2L_18727769_SNP [dm6]	T	G	4.109e^-4	0.888	INTRON CG10348
3L	14618422	3L_14618422_INS [dm3] 3L_14625322_INS [dm6]	T	AAA	4.111e^-4	0.888	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13076210	2L_13076210_SNP [dm3] 2L_13076210_SNP [dm6]	T	C	4.120e^-4	0.888	INTERGENIC
3R	16385328	3R_16385328_SNP [dm3] 3R_20559606_SNP [dm6]	A	T	4.121e^-4	0.888	UTR_3_PRIME CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3016964	3L_3016964_SNP [dm3] 3L_3016964_SNP [dm6]	G	A	4.124e^-4	0.888	SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
2L	20290494	2L_20290494_SNP [dm3] 2L_20290494_SNP [dm6]	A	G	4.125e^-4	0.888	INTERGENIC
2R	16945826	2R_16945826_SNP [dm3] 2R_21058321_SNP [dm6]	C	T	4.128e^-4	0.888	INTRON cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	12357704	3L_12357704_SNP [dm3] 3L_12364604_SNP [dm6]	G	A	4.132e^-4	0.888	INTERGENIC
3R	25484344	3R_25484344_SNP [dm3] 3R_29658622_SNP [dm6]	C	G	4.134e^-4	0.888	INTRON Dop1R2
3L	6061669	3L_6061669_SNP [dm3] 3L_6068569_SNP [dm6]	A	T	4.134e^-4	0.888	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19885747	2R_19885747_SNP [dm3] 2R_23998224_SNP [dm6]	G	C	4.143e^-4	0.888	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9272854	2R_9272854_SNP [dm3] 2R_13385349_SNP [dm6]	T	G	4.146e^-4	0.888	INTERGENIC
3L	22626897	3L_22626897_SNP [dm3] 3L_22633797_SNP [dm6]	A	G	4.148e^-4	0.888	INTRON CG14459	TF binding site mE1_TFBS_ttk mE1_TFBS_zfh1
2R	17337046	2R_17337046_SNP [dm3] 2R_21449541_SNP [dm6]	C	T	4.154e^-4	0.888	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
X	11786461	X_11786461_SNP [dm3] X_11892428_SNP [dm6]	G	T	4.163e^-4	0.888	INTRON sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14192256	3L_14192256_SNP [dm3] 3L_14199156_SNP [dm6]	A	G	4.164e^-4	0.888	INTRON nuf
2R	19085513	2R_19085513_SNP [dm3] 2R_23197990_SNP [dm6]	G	T	4.167e^-4	0.888	INTRON CG34371
X	2555783	X_2555783_DEL [dm3] X_2661750_DEL [dm6]	ATA	A	4.167e^-4	0.888	INTRON sgg
3L	954295	3L_954295_SNP [dm3] 3L_954295_SNP [dm6]	G	A	4.167e^-4	0.888	INTRON Glut1
3L	17136081	3L_17136081_SNP [dm3] 3L_17142981_SNP [dm6]	G	A	4.178e^-4	0.888	INTRON Rbp6
3R	17731692	3R_17731692_SNP [dm3] 3R_21905970_SNP [dm6]	G	T	4.192e^-4	0.888	UTR_3_PRIME CG6678
2L	15358504	2L_15358504_SNP [dm3] 2L_15358504_SNP [dm6]	C	A	4.197e^-4	0.888	INTERGENIC
X	8292597	X_8292597_SNP [dm3] X_8398564_SNP [dm6]	T	A	4.199e^-4	0.888	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18952970	2R_18952970_SNP [dm3] 2R_23065447_SNP [dm6]	C	T	4.201e^-4	0.888	SYNONYMOUS_CODING PPO3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10222668	3L_10222668_SNP [dm3] 3L_10229568_SNP [dm6]	A	T	4.202e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8009629	2L_8009629_SNP [dm3] 2L_8009629_SNP [dm6]	A	G	4.213e^-4	0.888	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	16580208	2R_16580208_SNP [dm3] 2R_20692703_SNP [dm6]	A	C	4.214e^-4	0.888	UPSTREAM CG13438 DOWNSTREAM CR44659 INTERGENIC
2R	5403612	2R_5403612_SNP [dm3] 2R_9516107_SNP [dm6]	G	A	4.229e^-4	0.888	UPSTREAM brp INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11165036	2R_11165036_SNP [dm3] 2R_15277531_SNP [dm6]	G	A	4.243e^-4	0.888	INTRON Trpm
3R	16384146	3R_16384146_SNP [dm3] 3R_20558424_SNP [dm6]	A	G	4.243e^-4	0.888	SYNONYMOUS_CODING CG5180 UPSTREAM att-ORFA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15642970	3L_15642970_SNP [dm3] 3L_15649870_SNP [dm6]	A	T	4.247e^-4	0.888	UPSTREAM Eig71Eb & 2 others DOWNSTREAM CG43083 INTERGENIC
2R	9122616	2R_9122616_SNP [dm3] 2R_13235111_SNP [dm6]	C	T	4.254e^-4	0.888	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1147296	2L_1147296_SNP [dm3] 2L_1147296_SNP [dm6]	T	A	4.255e^-4	0.888	UTR_3_PRIME MFS3 UPSTREAM CG4749	TF binding site mE1_TFBS_chinmo
2L	18276173	2L_18276173_SNP [dm3] 2L_18276173_SNP [dm6]	C	A	4.257e^-4	0.888	UPSTREAM CG42750 INTERGENIC
2L	4891761	2L_4891761_SNP [dm3] 2L_4891761_SNP [dm6]	T	C	4.261e^-4	0.888	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1447133	3L_1447133_INS [dm3] 3L_1447133_INS [dm6]	G	GTCGG	4.262e^-4	0.888	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9122934	2R_9122934_SNP [dm3] 2R_13235429_SNP [dm6]	A	G	4.266e^-4	0.888	UPSTREAM CG4676 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	21088772	2R_21088772_SNP [dm3] 2R_25201249_SNP [dm6]	T	C	4.268e^-4	0.888	INTRON CG9380
2L	962397	2L_962397_SNP [dm3] 2L_962397_SNP [dm6]	A	T	4.268e^-4	0.888	INTERGENIC
3L	10148097	3L_10148097_SNP [dm3] 3L_10154997_SNP [dm6]	C	A	4.273e^-4	0.888	INTRON dpr10
2L	4218477	2L_4218477_SNP [dm3] 2L_4218477_SNP [dm6]	A	T	4.273e^-4	0.888	INTRON ft
X	8625171	X_8625171_SNP [dm3] X_8731138_SNP [dm6]	T	C	4.283e^-4	0.888	INTERGENIC
2L	2864951	2L_2864951_SNP [dm3] 2L_2864951_SNP [dm6]	C	T	4.288e^-4	0.888	INTRON CG2991	TF binding site BDTNP1_TFBS_da
2R	12640961	2R_12640961_SNP [dm3] 2R_16753456_SNP [dm6]	A	G	4.304e^-4	0.888	SYNONYMOUS_CODING unc-104 UPSTREAM CG34189
3L	7188790	3L_7188790_SNP [dm3] 3L_7195690_SNP [dm6]	T	G	4.306e^-4	0.888	INTERGENIC
2R	12026171	2R_12026171_SNP [dm3] 2R_16138666_SNP [dm6]	A	G	4.309e^-4	0.888	UPSTREAM Got1 DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl
X	11786459	X_11786459_SNP [dm3] X_11892426_SNP [dm6]	T	C	4.312e^-4	0.888	INTRON sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	1268900	2L_1268900_SNP [dm3] 2L_1268900_SNP [dm6]	A	T	4.312e^-4	0.888	INTRON robo3
2L	19816156	2L_19816156_SNP [dm3] 2L_19816156_SNP [dm6]	T	C	4.314e^-4	0.888	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24355825	3R_24355825_SNP [dm3] 3R_28530103_SNP [dm6]	A	C	4.314e^-4	0.888	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	7934013	2R_7934013_SNP [dm3] 2R_12046508_SNP [dm6]	A	G	4.321e^-4	0.888	INTRON Drep-1
2R	19964161	2R_19964161_INS [dm3] 2R_24076638_INS [dm6]	A	ACAATA	4.321e^-4	0.888	DOWNSTREAM Mlp60A INTRON Mlp60A	TF binding site mE1_TFBS_cad
X	20946336	X_20946336_SNP [dm3] X_21075309_SNP [dm6]	T	A	4.321e^-4	0.888	INTRON bves
2R	8620558	2R_8620558_SNP [dm3] 2R_12733053_SNP [dm6]	T	A	4.325e^-4	0.888	INTRON CG42663	TF binding site mE1_TFBS_HSA
2R	12598741	2R_12598741_SNP [dm3] 2R_16711236_SNP [dm6]	A	G	4.328e^-4	0.888	INTRON CG30463
X	6425793	X_6425793_SNP [dm3] X_6531760_SNP [dm6]	C	G	4.332e^-4	0.888	UPSTREAM snoRNA:Or-CD10 INTRON RpL7A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	6425836	X_6425836_SNP [dm3] X_6531803_SNP [dm6]	G	A	4.332e^-4	0.888	UPSTREAM snoRNA:Or-CD10 INTRON RpL7A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	15226146	3R_15226146_SNP [dm3] 3R_19400424_SNP [dm6]	T	G	4.333e^-4	0.888	SYNONYMOUS_CODING Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2739145	3R_2739145_SNP [dm3] 3R_6913423_SNP [dm6]	T	G	4.334e^-4	0.888	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9410811	2R_9410811_SNP [dm3] 2R_13523306_SNP [dm6]	T	A	4.346e^-4	0.888	UTR_3_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
X	20946228	X_20946228_DEL [dm3] X_21075201_DEL [dm6]	AAA	G	4.346e^-4	0.888	INTRON bves
2R	8874041	2R_8874041_SNP [dm3] 2R_12986536_SNP [dm6]	A	C	4.346e^-4	0.888	DOWNSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4744851	2L_4744851_DEL [dm3] 2L_4744851_DEL [dm6]	GAGCGATGA	G	4.349e^-4	0.888	INTRON CG15630
2R	12033871	2R_12033871_SNP [dm3] 2R_16146366_SNP [dm6]	T	A	4.354e^-4	0.888	UTR_3_PRIME Ext2 DOWNSTREAM Aats-cys
3L	1852984	3L_1852984_SNP [dm3] 3L_1852984_SNP [dm6]	A	G	4.354e^-4	0.888	INTRON CG13936	TF binding site mE1_TFBS_cad
3R	20547302	3R_20547302_SNP [dm3] 3R_24721580_SNP [dm6]	G	T	4.356e^-4	0.888	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	10149300	3L_10149300_SNP [dm3] 3L_10156200_SNP [dm6]	G	T	4.368e^-4	0.888	INTRON dpr10
3R	20071009	3R_20071009_SNP [dm3] 3R_24245287_SNP [dm6]	C	T	4.369e^-4	0.888	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18280301	2L_18280301_INS [dm3] 2L_18280301_INS [dm6]	G	GGACCG	4.386e^-4	0.888	UPSTREAM CR44902 INTERGENIC
X	2991014	X_2991014_SNP [dm3] X_3096981_SNP [dm6]	G	C	4.389e^-4	0.888	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19466387	2R_19466387_SNP [dm3] 2R_23578864_SNP [dm6]	G	A	4.398e^-4	0.888	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19503786	3L_19503786_SNP [dm3] 3L_19510686_SNP [dm6]	T	C	4.400e^-4	0.888	INTERGENIC
X	8284492	X_8284492_SNP [dm3] X_8390459_SNP [dm6]	A	T	4.401e^-4	0.888	DOWNSTREAM CG1387 INTERGENIC
3R	10415420	3R_10415420_DEL [dm3] 3R_14589698_DEL [dm6]	TGTT	C	4.419e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10415429	3R_10415429_DEL [dm3] 3R_14589707_DEL [dm6]	ATAT	TC	4.419e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18029656	3R_18029656_SNP [dm3] 3R_22203934_SNP [dm6]	C	A	4.427e^-4	0.888	INTRON SKIP & 1 other
2L	9542486	2L_9542486_INS [dm3] 2L_9542486_INS [dm6]	T	TGTATT	4.432e^-4	0.888	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
3L	19047348	3L_19047348_SNP [dm3] 3L_19054248_SNP [dm6]	A	T	4.433e^-4	0.888	UPSTREAM CG43407 INTERGENIC
3L	19133569	3L_19133569_SNP [dm3] 3L_19140469_SNP [dm6]	G	A	4.440e^-4	0.888	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk
2L	1368985	2L_1368985_SNP [dm3] 2L_1368985_SNP [dm6]	C	T	4.442e^-4	0.888	UTR_3_PRIME CG14346
3R	10147033	3R_10147033_SNP [dm3] 3R_14321311_SNP [dm6]	A	T	4.444e^-4	0.888	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
3R	10303353	3R_10303353_SNP [dm3] 3R_14477631_SNP [dm6]	T	C	4.450e^-4	0.888	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	9122613	2R_9122613_SNP [dm3] 2R_13235108_SNP [dm6]	A	G	4.456e^-4	0.888	UTR_5_PRIME CG4670 UPSTREAM CG4676 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	14266140	X_14266140_SNP [dm3] X_14372107_SNP [dm6]	C	G	4.456e^-4	0.888	INTRON dpr8
3R	20443293	3R_20443293_SNP [dm3] 3R_24617571_SNP [dm6]	T	C	4.459e^-4	0.888	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11891043	3R_11891043_SNP [dm3] 3R_16065321_SNP [dm6]	A	G	4.470e^-4	0.888	INTRON CG10185	TF binding site mE1_TFBS_cad
3R	18159556	3R_18159556_SNP [dm3] 3R_22333834_SNP [dm6]	G	A	4.470e^-4	0.888	DOWNSTREAM CG5388 INTRON CG5391
3L	18324513	3L_18324513_SNP [dm3] 3L_18331413_SNP [dm6]	G	A	4.484e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19602498	2R_19602498_SNP [dm3] 2R_23714975_SNP [dm6]	A	G	4.495e^-4	0.888	INTRON Sesn
3L	2284289	3L_2284289_SNP [dm3] 3L_2284289_SNP [dm6]	A	G	4.496e^-4	0.888	INTRON MsR2
X	14268184	X_14268184_SNP [dm3] X_14374151_SNP [dm6]	C	G	4.500e^-4	0.888	INTRON dpr8
2L	12213164	2L_12213164_SNP [dm3] 2L_12213164_SNP [dm6]	C	T	4.500e^-4	0.888	INTRON aret
2L	2830922	2L_2830922_SNP [dm3] 2L_2830922_SNP [dm6]	G	T	4.502e^-4	0.888	UPSTREAM Duox INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1563521	3L_1563521_SNP [dm3] 3L_1563521_SNP [dm6]	A	C	4.506e^-4	0.888	INTRON CG7879
3R	19227128	3R_19227128_DEL [dm3] 3R_23401406_DEL [dm6]	AAA	A	4.510e^-4	0.888	INTERGENIC
3L	18300595	3L_18300595_SNP [dm3] 3L_18307495_SNP [dm6]	C	T	4.517e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18258773	3L_18258773_SNP [dm3] 3L_18265673_SNP [dm6]	T	G	4.520e^-4	0.888	INTERGENIC
2L	5818967	2L_5818967_SNP [dm3] 2L_5818967_SNP [dm6]	A	T	4.522e^-4	0.888	UPSTREAM CG31644 INTERGENIC
2L	19771759	2L_19771759_SNP [dm3] 2L_19771759_SNP [dm6]	G	C	4.529e^-4	0.888	INTERGENIC
2L	3883238	2L_3883238_SNP [dm3] 2L_3883238_SNP [dm6]	C	T	4.542e^-4	0.888	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3924934	3L_3924934_SNP [dm3] 3L_3924934_SNP [dm6]	T	C	4.549e^-4	0.888	INTRON Eip63F-1
3R	10415388	3R_10415388_SNP [dm3] 3R_14589666_SNP [dm6]	T	A	4.552e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10415408	3R_10415408_SNP [dm3] 3R_14589686_SNP [dm6]	T	C	4.552e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10415435	3R_10415435_SNP [dm3] 3R_14589713_SNP [dm6]	C	T	4.552e^-4	0.888	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9123419	2L_9123419_SNP [dm3] 2L_9123419_SNP [dm6]	A	G	4.553e^-4	0.888	UPSTREAM CR44615 INTERGENIC
3R	22885998	3R_22885998_SNP [dm3] 3R_27060276_SNP [dm6]	T	G	4.560e^-4	0.888	SYNONYMOUS_CODING Nep5
3L	9587380	3L_9587380_SNP [dm3] 3L_9594280_SNP [dm6]	A	G	4.574e^-4	0.888	UTR_3_PRIME CG42673 INTRON CG42673
3L	13182628	3L_13182628_SNP [dm3] 3L_13189528_SNP [dm6]	G	T	4.581e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14720854	3R_14720854_SNP [dm3] 3R_18895132_SNP [dm6]	T	C	4.595e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad
X	14270926	X_14270926_SNP [dm3] X_14376893_SNP [dm6]	C	A	4.603e^-4	0.888	INTRON dpr8
2L	4439445	2L_4439445_SNP [dm3] 2L_4439445_SNP [dm6]	T	A	4.604e^-4	0.888	START_GAINED CG15431 UTR_5_PRIME CG15431
3R	17952857	3R_17952857_SNP [dm3] 3R_22127135_SNP [dm6]	T	A	4.604e^-4	0.888	INTRON CG42390
3L	2629071	3L_2629071_SNP [dm3] 3L_2629071_SNP [dm6]	C	T	4.605e^-4	0.888	DOWNSTREAM CR45660 INTRON Pxn
3L	7140970	3L_7140970_SNP [dm3] 3L_7147870_SNP [dm6]	C	G	4.607e^-4	0.888	SPLICE_SITE_REGION corn INTRON corn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10040504	2L_10040504_INS [dm3] 2L_10040504_INS [dm6]	A	ATGTA	4.608e^-4	0.888	INTERGENIC
3R	21997053	3R_21997053_SNP [dm3] 3R_26171331_SNP [dm6]	G	A	4.610e^-4	0.888	UPSTREAM CG31323 INTRON CG31323
2L	620832	2L_620832_SNP [dm3] 2L_620832_SNP [dm6]	G	A	4.615e^-4	0.888	SYNONYMOUS_CODING lectin-21Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24497406	3R_24497406_SNP [dm3] 3R_28671684_SNP [dm6]	T	C	4.624e^-4	0.888	SYNONYMOUS_CODING CG9989	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
2R	3877620	2R_3877620_SNP [dm3] 2R_7990115_SNP [dm6]	C	T	4.629e^-4	0.888	UPSTREAM ACC INTRON ACC & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8620546	2R_8620546_SNP [dm3] 2R_12733041_SNP [dm6]	C	G	4.639e^-4	0.888	INTRON CG42663	TF binding site mE1_TFBS_HSA
2R	17123732	2R_17123732_SNP [dm3] 2R_21236227_SNP [dm6]	G	T	4.640e^-4	0.888	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	13193081	2R_13193081_SNP [dm3] 2R_17305576_SNP [dm6]	C	A	4.644e^-4	0.888	INTRON mbl
3L	14159683	3L_14159683_SNP [dm3] 3L_14166583_SNP [dm6]	C	T	4.645e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14938450	3L_14938450_SNP [dm3] 3L_14945350_SNP [dm6]	C	T	4.652e^-4	0.888	DOWNSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	24355803	3R_24355803_SNP [dm3] 3R_28530081_SNP [dm6]	G	C	4.653e^-4	0.888	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	13738772	3R_13738772_SNP [dm3] 3R_17913050_SNP [dm6]	A	G	4.660e^-4	0.888	INTRON Rim
3L	2178630	3L_2178630_SNP [dm3] 3L_2178630_SNP [dm6]	T	A	4.667e^-4	0.888	INTERGENIC
3R	10647344	3R_10647344_SNP [dm3] 3R_14821622_SNP [dm6]	A	T	4.667e^-4	0.888	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_cad
3R	22797614	3R_22797614_SNP [dm3] 3R_26971892_SNP [dm6]	T	C	4.668e^-4	0.888	INTRON CG5521
X	17249069	X_17249069_SNP [dm3] X_17355036_SNP [dm6]	C	A	4.668e^-4	0.888	INTERGENIC
3R	18673292	3R_18673292_SNP [dm3] 3R_22847570_SNP [dm6]	G	T	4.674e^-4	0.888	INTERGENIC
X	3528281	X_3528281_SNP [dm3] X_3634248_SNP [dm6]	A	G	4.685e^-4	0.888	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7868842	3L_7868842_SNP [dm3] 3L_7875742_SNP [dm6]	C	A	4.689e^-4	0.888	INTRON CG32365	TF binding site mE1_TFBS_kn
3R	24519041	3R_24519041_SNP [dm3] 3R_28693319_SNP [dm6]	A	T	4.692e^-4	0.888	INTRON CG9990	TF binding site mE1_TFBS_cad
2R	16579771	2R_16579771_SNP [dm3] 2R_20692266_SNP [dm6]	C	T	4.693e^-4	0.888	UPSTREAM CG13438 EXON CR44659
2L	5821111	2L_5821111_SNP [dm3] 2L_5821111_SNP [dm6]	G	A	4.696e^-4	0.888	INTERGENIC
3L	4446051	3L_4446051_SNP [dm3] 3L_4446051_SNP [dm6]	C	T	4.703e^-4	0.888	UPSTREAM CG12607 EXON CR45739
3L	5436128	3L_5436128_SNP [dm3] 3L_5443028_SNP [dm6]	C	G	4.703e^-4	0.888	DOWNSTREAM CG34391 INTERGENIC
X	9813388	X_9813388_SNP [dm3] X_9919355_SNP [dm6]	T	G	4.706e^-4	0.888	INTERGENIC
3R	24304166	3R_24304166_SNP [dm3] 3R_28478444_SNP [dm6]	T	C	4.707e^-4	0.888	INTERGENIC
3R	19026728	3R_19026728_SNP [dm3] 3R_23201006_SNP [dm6]	C	G	4.715e^-4	0.888	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11459292	3R_11459292_SNP [dm3] 3R_15633570_SNP [dm6]	A	G	4.716e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2619973	3L_2619973_SNP [dm3] 3L_2619973_SNP [dm6]	C	T	4.720e^-4	0.888	INTRON Pxn
2L	2287067	2L_2287067_SNP [dm3] 2L_2287067_SNP [dm6]	A	G	4.728e^-4	0.888	UTR_3_PRIME CG42658 UPSTREAM CG31681
2R	11043873	2R_11043873_SNP [dm3] 2R_15156368_SNP [dm6]	T	A	4.728e^-4	0.888	INTRON igl
3R	15732947	3R_15732947_SNP [dm3] 3R_19907225_SNP [dm6]	T	C	4.737e^-4	0.888	UPSTREAM CR45047 INTRON RhoGAP92B
3R	22645401	3R_22645401_SNP [dm3] 3R_26819679_SNP [dm6]	A	G	4.739e^-4	0.888	INTRON Tl
3L	7633585	3L_7633585_SNP [dm3] 3L_7640485_SNP [dm6]	T	A	4.745e^-4	0.888	UPSTREAM CG33276 DOWNSTREAM CG33275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16625827	2L_16625827_SNP [dm3] 2L_16625827_SNP [dm6]	C	T	4.746e^-4	0.888	INTRON CG42389	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run
3L	9597904	3L_9597904_SNP [dm3] 3L_9604804_SNP [dm6]	C	T	4.747e^-4	0.888	INTRON CG3280
3R	24513340	3R_24513340_SNP [dm3] 3R_28687618_SNP [dm6]	C	T	4.754e^-4	0.888	INTRON CG9990
2R	20718304	2R_20718304_SNP [dm3] 2R_24830781_SNP [dm6]	T	C	4.755e^-4	0.888	INTRON Dll	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22797602	3R_22797602_SNP [dm3] 3R_26971880_SNP [dm6]	G	T	4.758e^-4	0.888	INTRON CG5521
3L	13790680	3L_13790680_SNP [dm3] 3L_13797580_SNP [dm6]	T	C	4.764e^-4	0.888	INTRON bru-3
2L	9123418	2L_9123418_SNP [dm3] 2L_9123418_SNP [dm6]	A	C	4.770e^-4	0.888	UPSTREAM CR44615 INTERGENIC
2L	2019219	2L_2019219_SNP [dm3] 2L_2019219_SNP [dm6]	T	C	4.770e^-4	0.888	INTRON CG4238	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9560557	2R_9560557_SNP [dm3] 2R_13673052_SNP [dm6]	G	A	4.773e^-4	0.888	DOWNSTREAM CR45032 INTRON fas
2R	21107848	2R_21107848_SNP [dm3] 2R_25220325_SNP [dm6]	A	G	4.779e^-4	0.888	INTRON CG9380	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.301e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.06076

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2046 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	5420748	3L_5420748_SNP [dm3] 3L_5427648_SNP [dm6]	A	G	3.554e^-7	0.667	INTRON CG34391
3R	6548509	3R_6548509_SNP [dm3] 3R_10722787_SNP [dm6]	C	G	9.675e^-7	0.719	INTERGENIC
3L	597491	3L_597491_SNP [dm3] 3L_597491_SNP [dm6]	G	A	2.395e^-6	0.719	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8029639	3L_8029639_SNP [dm3] 3L_8036539_SNP [dm6]	A	G	3.761e^-6	0.719	INTRON nmo	TF binding site BDTNP1_TFBS_twi
2R	11061345	2R_11061345_SNP [dm3] 2R_15173840_SNP [dm6]	T	C	3.817e^-6	0.719	INTRON igl
3R	5254505	3R_5254505_SNP [dm3] 3R_9428783_SNP [dm6]	G	A	4.285e^-6	0.719	INTRON ps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17227141	2R_17227141_SNP [dm3] 2R_21339636_SNP [dm6]	C	A	4.580e^-6	0.719	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	21186418	X_21186418_SNP [dm3] X_21315391_SNP [dm6]	C	T	5.279e^-6	0.719	UPSTREAM Rpt6 INTRON CG1801
2R	7561347	2R_7561347_SNP [dm3] 2R_11673842_SNP [dm6]	G	T	5.463e^-6	0.719	INTRON Roc2 & 1 other
2L	10381440	2L_10381440_SNP [dm3] 2L_10381440_SNP [dm6]	G	A	6.866e^-6	0.719	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
3R	5449512	3R_5449512_SNP [dm3] 3R_9623790_SNP [dm6]	A	G	7.381e^-6	0.719	NON_SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6470076	2L_6470076_SNP [dm3] 2L_6470076_SNP [dm6]	G	A	7.721e^-6	0.719	INTRON mmy	TF binding site mE1_TFBS_cad
2L	15616929	2L_15616929_SNP [dm3] 2L_15616929_SNP [dm6]	A	C	7.787e^-6	0.719	UPSTREAM CG11865 & 1 other INTERGENIC
2L	9836335	2L_9836335_DEL [dm3] 2L_9836335_DEL [dm6]	ATTGAT	A	7.902e^-6	0.719	INTRON nAChRalpha6
2L	3971924	2L_3971924_SNP [dm3] 2L_3971924_SNP [dm6]	T	A	8.571e^-6	0.719	INTRON fred
2R	14561195	2R_14561195_SNP [dm3] 2R_18673690_SNP [dm6]	C	G	8.655e^-6	0.719	UPSTREAM edl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6253818	3L_6253818_SNP [dm3] 3L_6260718_SNP [dm6]	C	G	8.838e^-6	0.719	SYNONYMOUS_CODING ImpL3
3R	17314772	3R_17314772_DEL [dm3] 3R_21489050_DEL [dm6]	CCGTGAGC	C	8.847e^-6	0.719	INTERGENIC
2R	2015267	2R_2015267_SNP [dm3] 2R_6127762_SNP [dm6]	T	A	8.858e^-6	0.719	INTRON EcR
2R	13853604	2R_13853604_SNP [dm3] 2R_17966099_SNP [dm6]	G	T	8.878e^-6	0.719	INTERGENIC
2R	17227525	2R_17227525_SNP [dm3] 2R_21340020_SNP [dm6]	T	C	9.290e^-6	0.719	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1779952	3L_1779952_SNP [dm3] 3L_1779952_SNP [dm6]	T	C	1.010e^-5	0.719	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7851193	2L_7851193_SNP [dm3] 2L_7851193_SNP [dm6]	C	T	1.027e^-5	0.719	INTRON CG14535
2L	5579177	2L_5579177_SNP [dm3] 2L_5579177_SNP [dm6]	G	A	1.088e^-5	0.719	DOWNSTREAM CG14011 INTERGENIC
3L	7262979	3L_7262979_SNP [dm3] 3L_7269879_SNP [dm6]	C	T	1.115e^-5	0.719	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5992183	X_5992183_INS [dm3] X_6098150_INS [dm6]	A	AA	1.149e^-5	0.719	INTRON Nep1	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10912320	2R_10912320_SNP [dm3] 2R_15024815_SNP [dm6]	G	A	1.167e^-5	0.719	SYNONYMOUS_CODING Obp51a UPSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_dl
2R	16243797	2R_16243797_SNP [dm3] 2R_20356292_SNP [dm6]	G	A	1.172e^-5	0.719	INTERGENIC
2L	8254946	2L_8254946_DEL [dm3] 2L_8254946_DEL [dm6]	TCAGCCAAGTTAT...	T	1.216e^-5	0.719	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
3R	24785269	3R_24785269_SNP [dm3] 3R_28959547_SNP [dm6]	A	G	1.250e^-5	0.719	INTRON CG14521
2L	9836362	2L_9836362_SNP [dm3] 2L_9836362_SNP [dm6]	G	A	1.301e^-5	0.719	INTRON nAChRalpha6
2L	5579178	2L_5579178_SNP [dm3] 2L_5579178_SNP [dm6]	G	T	1.328e^-5	0.719	DOWNSTREAM CG14011 INTERGENIC
2L	10425783	2L_10425783_SNP [dm3] 2L_10425783_SNP [dm6]	A	G	1.347e^-5	0.719	SYNONYMOUS_CODING SmB DOWNSTREAM CG5168
2L	10134994	2L_10134994_INS [dm3] 2L_10134994_INS [dm6]	G	GG	1.365e^-5	0.719	INTRON CG44153
2L	21362948	2L_21362948_SNP [dm3] 2L_21362948_SNP [dm6]	G	A	1.410e^-5	0.719	INTRON dtr
2R	17768035	2R_17768035_SNP [dm3] 2R_21880530_SNP [dm6]	C	T	1.454e^-5	0.719	DOWNSTREAM PpN58A INTRON Fili
X	21185837	X_21185837_SNP [dm3] X_21314810_SNP [dm6]	A	T	1.498e^-5	0.719	INTRON CG1801
3L	596526	3L_596526_SNP [dm3] 3L_596526_SNP [dm6]	G	A	1.509e^-5	0.719	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad
2L	8256453	2L_8256453_SNP [dm3] 2L_8256453_SNP [dm6]	G	A	1.519e^-5	0.719	INTRON CG8086
2R	17767836	2R_17767836_SNP [dm3] 2R_21880331_SNP [dm6]	G	A	1.532e^-5	0.719	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19357660	3R_19357660_INS [dm3] 3R_23531938_INS [dm6]	G	GG	1.674e^-5	0.725	UPSTREAM CG10175 INTERGENIC
2L	2553644	2L_2553644_SNP [dm3] 2L_2553644_SNP [dm6]	T	A	1.713e^-5	0.725	UPSTREAM CG3515 INTERGENIC
2L	16837539	2L_16837539_SNP [dm3] 2L_16837539_SNP [dm6]	G	C	1.783e^-5	0.725	UPSTREAM SclB & 2 others INTERGENIC
2L	901912	2L_901912_SNP [dm3] 2L_901912_SNP [dm6]	G	T	1.789e^-5	0.725	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9836325	2L_9836325_SNP [dm3] 2L_9836325_SNP [dm6]	C	A	1.814e^-5	0.725	INTRON nAChRalpha6
3L	1780331	3L_1780331_SNP [dm3] 3L_1780331_SNP [dm6]	G	C	1.828e^-5	0.725	INTRON alpha-Spec
3R	19358592	3R_19358592_SNP [dm3] 3R_23532870_SNP [dm6]	G	C	1.843e^-5	0.725	DOWNSTREAM CG10170 INTERGENIC
2R	7561373	2R_7561373_SNP [dm3] 2R_11673868_SNP [dm6]	T	A	1.885e^-5	0.725	INTRON Roc2 & 1 other
2R	17821220	2R_17821220_SNP [dm3] 2R_21933715_SNP [dm6]	G	A	1.905e^-5	0.725	INTRON Fili
2L	9836327	2L_9836327_INS [dm3] 2L_9836327_INS [dm6]	G	GACTTTAAAG	1.993e^-5	0.725	INTRON nAChRalpha6
X	5992199	X_5992199_SNP [dm3] X_6098166_SNP [dm6]	G	A	2.037e^-5	0.725	INTRON Nep1	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	3971984	2L_3971984_SNP [dm3] 2L_3971984_SNP [dm6]	C	G	2.106e^-5	0.725	INTRON fred
2R	10912314	2R_10912314_SNP [dm3] 2R_15024809_SNP [dm6]	A	T	2.106e^-5	0.725	NON_SYNONYMOUS_CODING Obp51a UPSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_dl
2R	7561386	2R_7561386_SNP [dm3] 2R_11673881_SNP [dm6]	C	T	2.115e^-5	0.725	INTRON Roc2 & 1 other
2L	4983622	2L_4983622_SNP [dm3] 2L_4983622_SNP [dm6]	C	T	2.127e^-5	0.725	INTRON CG34126	TF binding site mE1_TFBS_chinmo
2L	8297920	2L_8297920_DEL [dm3] 2L_8297920_DEL [dm6]	TAAT	T	2.200e^-5	0.725	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10819823	2R_10819823_SNP [dm3] 2R_14932318_SNP [dm6]	G	A	2.295e^-5	0.725	SYNONYMOUS_CODING CG10253
3L	7025752	3L_7025752_SNP [dm3] 3L_7032652_SNP [dm6]	T	C	2.343e^-5	0.725	INTRON Mp
2L	3971925	2L_3971925_SNP [dm3] 2L_3971925_SNP [dm6]	A	C	2.452e^-5	0.725	INTRON fred
2R	10912312	2R_10912312_SNP [dm3] 2R_15024807_SNP [dm6]	T	C	2.498e^-5	0.725	SYNONYMOUS_CODING Obp51a UPSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_dl
3L	22320587	3L_22320587_SNP [dm3] 3L_22327487_SNP [dm6]	A	C	2.501e^-5	0.725	INTRON Ten-m	TF binding site mE1_TFBS_cad
2R	10828648	2R_10828648_SNP [dm3] 2R_14941143_SNP [dm6]	C	T	2.510e^-5	0.725	DOWNSTREAM Lap1 INTERGENIC
2L	15616260	2L_15616260_SNP [dm3] 2L_15616260_SNP [dm6]	A	G	2.543e^-5	0.725	NON_SYNONYMOUS_CODING CG15253 UPSTREAM CG11865
3L	16042728	3L_16042728_SNP [dm3] 3L_16049628_SNP [dm6]	G	C	2.602e^-5	0.725	INTRON th EXON CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	5300124	3R_5300124_SNP [dm3] 3R_9474402_SNP [dm6]	G	A	2.617e^-5	0.725	INTRON CG16779
2L	7232215	2L_7232215_SNP [dm3] 2L_7232215_SNP [dm6]	C	G	2.634e^-5	0.725	UTR_3_PRIME CG43800 INTRON Ndae1
2L	20807526	2L_20807526_SNP [dm3] 2L_20807526_SNP [dm6]	C	T	2.679e^-5	0.725	INTRON CG9328
3L	22131021	3L_22131021_SNP [dm3] 3L_22137921_SNP [dm6]	C	T	2.679e^-5	0.725	INTRON olf413	TF binding site mE1_TFBS_Trl
2L	8331585	2L_8331585_SNP [dm3] 2L_8331585_SNP [dm6]	G	A	2.693e^-5	0.725	INTRON CG14275
2L	11604425	2L_11604425_SNP [dm3] 2L_11604425_SNP [dm6]	A	G	2.726e^-5	0.725	INTRON kek2
2L	10360795	2L_10360795_SNP [dm3] 2L_10360795_SNP [dm6]	T	C	2.745e^-5	0.725	SYNONYMOUS_CODING Cand1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13853615	2R_13853615_SNP [dm3] 2R_17966110_SNP [dm6]	C	G	2.847e^-5	0.742	INTERGENIC
X	21189463	X_21189463_SNP [dm3] X_21318436_SNP [dm6]	G	A	2.952e^-5	0.758	SYNONYMOUS_CODING CG33713 UTR_3_PRIME CG33714 UPSTREAM CG1801 DOWNSTREAM Rpt6	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17227213	2R_17227213_SNP [dm3] 2R_21339708_SNP [dm6]	T	C	3.220e^-5	0.783	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6470101	2L_6470101_SNP [dm3] 2L_6470101_SNP [dm6]	T	A	3.256e^-5	0.783	INTRON mmy	TF binding site mE1_TFBS_cad
X	21189208	X_21189208_SNP [dm3] X_21318181_SNP [dm6]	G	C	3.258e^-5	0.783	NON_SYNONYMOUS_CODING CG33713 UTR_3_PRIME CG33714 UPSTREAM CG1801 DOWNSTREAM Rpt6	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8254740	2L_8254740_SNP [dm3] 2L_8254740_SNP [dm6]	A	T	3.272e^-5	0.783	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2R	9766697	2R_9766697_SNP [dm3] 2R_13879192_SNP [dm6]	A	G	3.291e^-5	0.783	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11449042	2R_11449042_SNP [dm3] 2R_15561537_SNP [dm6]	T	A	3.304e^-5	0.783	INTRON CG12963
2L	2553667	2L_2553667_SNP [dm3] 2L_2553667_SNP [dm6]	C	G	3.398e^-5	0.783	UPSTREAM CG3515 INTERGENIC
X	13009547	X_13009547_SNP [dm3] X_13115514_SNP [dm6]	T	C	3.405e^-5	0.783	INTRON CG42237
2L	11604803	2L_11604803_SNP [dm3] 2L_11604803_SNP [dm6]	T	G	3.505e^-5	0.783	INTRON kek2
2R	11073223	2R_11073223_SNP [dm3] 2R_15185718_SNP [dm6]	C	A	3.588e^-5	0.783	NON_SYNONYMOUS_CODING CG43068 INTRON igl
2L	10357548	2L_10357548_SNP [dm3] 2L_10357548_SNP [dm6]	G	A	3.629e^-5	0.783	SYNONYMOUS_CODING CG5045 UPSTREAM CG5367 DOWNSTREAM Cand1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	7902182	2L_7902182_SNP [dm3] 2L_7902182_SNP [dm6]	T	C	3.637e^-5	0.783	INTRON Snoo
2L	20807522	2L_20807522_SNP [dm3] 2L_20807522_SNP [dm6]	T	A	3.666e^-5	0.783	INTRON CG9328
2L	2684915	2L_2684915_SNP [dm3] 2L_2684915_SNP [dm6]	C	G	3.689e^-5	0.783	INTRON CG31690
2L	12354572	2L_12354572_SNP [dm3] 2L_12354572_SNP [dm6]	G	T	3.715e^-5	0.783	INTRON bru-2	TF binding site BDTNP1_TFBS_sna
X	21185604	X_21185604_SNP [dm3] X_21314577_SNP [dm6]	A	G	3.788e^-5	0.783	SYNONYMOUS_CODING CG1801
3L	1778505	3L_1778505_SNP [dm3] 3L_1778505_SNP [dm6]	A	G	3.794e^-5	0.783	UTR_3_PRIME alpha-Spec DOWNSTREAM alpha-Spec & 1 other	TF binding site mE1_TFBS_sbb
3L	10222720	3L_10222720_SNP [dm3] 3L_10229620_SNP [dm6]	C	G	4.075e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	25097410	3R_25097410_INS [dm3] 3R_29271688_INS [dm6]	T	TATTTG	4.105e^-5	0.783	INTERGENIC	regulatory region REDfly_CRMs
3R	22051322	3R_22051322_SNP [dm3] 3R_26225600_SNP [dm6]	A	T	4.110e^-5	0.783	INTERGENIC
2R	16209898	2R_16209898_SNP [dm3] 2R_20322393_SNP [dm6]	C	G	4.128e^-5	0.783	NON_SYNONYMOUS_CODING CG8920
3L	7306457	3L_7306457_SNP [dm3] 3L_7313357_SNP [dm6]	G	A	4.159e^-5	0.783	UPSTREAM unc-13-4A INTERGENIC
2R	10008006	2R_10008006_SNP [dm3] 2R_14120501_SNP [dm6]	A	G	4.164e^-5	0.783	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
3L	1768704	3L_1768704_SNP [dm3] 3L_1768704_SNP [dm6]	T	C	4.171e^-5	0.783	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7315325	2R_7315325_SNP [dm3] 2R_11427820_SNP [dm6]	C	T	4.229e^-5	0.783	UPSTREAM Drip INTRON Drip
3L	1777587	3L_1777587_SNP [dm3] 3L_1777587_SNP [dm6]	A	T	4.271e^-5	0.783	NON_SYNONYMOUS_CODING mRpL46 UPSTREAM CG2021 DOWNSTREAM CG12018 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	21197269	X_21197269_SNP [dm3] X_21326242_SNP [dm6]	A	G	4.422e^-5	0.783	SYNONYMOUS_CODING CG1486	TF binding site mE1_TFBS_chinmo
2L	15616715	2L_15616715_SNP [dm3] 2L_15616715_SNP [dm6]	A	G	4.443e^-5	0.783	UPSTREAM CG11865 & 1 other INTERGENIC
X	10193204	X_10193204_SNP [dm3] X_10299171_SNP [dm6]	A	G	4.603e^-5	0.783	INTRON alpha-Man-I
2R	10819858	2R_10819858_SNP [dm3] 2R_14932353_SNP [dm6]	G	A	4.638e^-5	0.783	INTRON CG10253
2L	6840731	2L_6840731_SNP [dm3] 2L_6840731_SNP [dm6]	A	G	4.643e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	8252265	2L_8252265_SNP [dm3] 2L_8252265_SNP [dm6]	G	T	4.748e^-5	0.783	SYNONYMOUS_CODING CG8086
2L	15616925	2L_15616925_SNP [dm3] 2L_15616925_SNP [dm6]	T	C	4.787e^-5	0.783	UPSTREAM CG11865 & 1 other INTERGENIC
2R	8964790	2R_8964790_SNP [dm3] 2R_13077285_SNP [dm6]	G	A	4.796e^-5	0.783	INTRON Drl-2	TF binding site mE1_TFBS_cad
2L	8331597	2L_8331597_SNP [dm3] 2L_8331597_SNP [dm6]	T	G	4.823e^-5	0.783	INTRON CG14275
2L	3128582	2L_3128582_SNP [dm3] 2L_3128582_SNP [dm6]	A	T	4.918e^-5	0.783	UPSTREAM CG15403 INTRON toc
3R	26753718	3R_26753718_SNP [dm3] 3R_30927996_SNP [dm6]	G	A	4.928e^-5	0.783	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	22320572	3L_22320572_SNP [dm3] 3L_22327472_SNP [dm6]	T	G	4.953e^-5	0.783	INTRON Ten-m	TF binding site mE1_TFBS_cad
X	14789282	X_14789282_INS [dm3] X_14895249_INS [dm6]	T	TC	4.976e^-5	0.783	INTRON Flo2 & 1 other
2L	901944	2L_901944_SNP [dm3] 2L_901944_SNP [dm6]	A	C	4.999e^-5	0.783	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	597524	3L_597524_SNP [dm3] 3L_597524_SNP [dm6]	A	T	5.017e^-5	0.783	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8225023	2L_8225023_SNP [dm3] 2L_8225023_SNP [dm6]	G	A	5.107e^-5	0.783	SYNONYMOUS_CODING Pvr
2L	3971928	2L_3971928_SNP [dm3] 2L_3971928_SNP [dm6]	T	A	5.111e^-5	0.783	INTRON fred
3R	19708707	3R_19708707_SNP [dm3] 3R_23882985_SNP [dm6]	T	C	5.146e^-5	0.783	INTRON Pli
3L	22499014	3L_22499014_SNP [dm3] 3L_22505914_SNP [dm6]	A	G	5.159e^-5	0.783	UPSTREAM CG43329 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10222668	3L_10222668_SNP [dm3] 3L_10229568_SNP [dm6]	A	T	5.168e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10029121	2L_10029121_SNP [dm3] 2L_10029121_SNP [dm6]	C	G	5.209e^-5	0.783	UTR_3_PRIME CG13127
3L	1781622	3L_1781622_SNP [dm3] 3L_1781622_SNP [dm6]	G	A	5.380e^-5	0.783	SYNONYMOUS_CODING alpha-Spec	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6653998	3R_6653998_SNP [dm3] 3R_10828276_SNP [dm6]	A	C	5.389e^-5	0.783	INTRON Cad86C	TF binding site BDTNP1_TFBS_dl
3L	1772467	3L_1772467_SNP [dm3] 3L_1772467_SNP [dm6]	A	G	5.407e^-5	0.783	UTR_3_PRIME CG13933 UPSTREAM Dhc62B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	20934005	2L_20934005_SNP [dm3] 2L_20934005_SNP [dm6]	C	G	5.450e^-5	0.783	UTR_5_PRIME CG9270	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	3573104	2R_3573104_SNP [dm3] 2R_7685599_SNP [dm6]	A	C	5.473e^-5	0.783	INTRON CG1399
3R	19897596	3R_19897596_SNP [dm3] 3R_24071874_SNP [dm6]	T	A	5.479e^-5	0.783	INTRON 4EHP
2R	8620480	2R_8620480_SNP [dm3] 2R_12732975_SNP [dm6]	A	C	5.494e^-5	0.783	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19708650	3R_19708650_SNP [dm3] 3R_23882928_SNP [dm6]	T	G	5.540e^-5	0.783	INTRON Pli
3R	7381038	3R_7381038_SNP [dm3] 3R_11555316_SNP [dm6]	A	T	5.632e^-5	0.783	DOWNSTREAM CG14708 INTERGENIC
2L	15615135	2L_15615135_INS [dm3] 2L_15615135_INS [dm6]	C	CTAAAAAGTATGTAGC...	5.651e^-5	0.783	UPSTREAM CG15254 DOWNSTREAM CG15253 INTERGENIC
3R	20378163	3R_20378163_SNP [dm3] 3R_24552441_SNP [dm6]	C	A	5.697e^-5	0.783	INTRON Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21362923	2L_21362923_SNP [dm3] 2L_21362923_SNP [dm6]	A	G	5.709e^-5	0.783	INTRON dtr
2L	8254854	2L_8254854_SNP [dm3] 2L_8254854_SNP [dm6]	T	A	5.782e^-5	0.783	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
X	21185268	X_21185268_SNP [dm3] X_21314241_SNP [dm6]	G	A	5.812e^-5	0.783	SYNONYMOUS_CODING CG1801
2L	4831821	2L_4831821_SNP [dm3] 2L_4831821_SNP [dm6]	T	C	5.911e^-5	0.783	SYNONYMOUS_CODING Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10537622	2L_10537622_SNP [dm3] 2L_10537622_SNP [dm6]	A	T	6.038e^-5	0.783	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	13853732	2R_13853732_SNP [dm3] 2R_17966227_SNP [dm6]	T	A	6.053e^-5	0.783	INTERGENIC
2R	18559286	2R_18559286_SNP [dm3] 2R_22671781_SNP [dm6]	T	C	6.058e^-5	0.783	SYNONYMOUS_CODING RYBP
2R	14545550	2R_14545550_SNP [dm3] 2R_18658045_SNP [dm6]	C	T	6.060e^-5	0.783	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2L	10380788	2L_10380788_SNP [dm3] 2L_10380788_SNP [dm6]	C	T	6.155e^-5	0.783	SYNONYMOUS_CODING gny DOWNSTREAM dpr19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3R	6532517	3R_6532517_SNP [dm3] 3R_10706795_SNP [dm6]	A	G	6.167e^-5	0.783	UTR_5_PRIME CG31467 UPSTREAM CG14684 DOWNSTREAM CG31278	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	11029231	2R_11029231_SNP [dm3] 2R_15141726_SNP [dm6]	C	G	6.197e^-5	0.783	INTRON chn	TF binding site mE1_TFBS_cad
2L	4593295	2L_4593295_SNP [dm3] 2L_4593295_SNP [dm6]	C	A	6.203e^-5	0.783	INTRON dp	TF binding site BDTNP1_TFBS_da
2L	11601064	2L_11601064_SNP [dm3] 2L_11601064_SNP [dm6]	C	A	6.225e^-5	0.783	INTRON kek2
2L	3152502	2L_3152502_SNP [dm3] 2L_3152502_SNP [dm6]	G	C	6.242e^-5	0.783	UTR_5_PRIME Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
2L	8252792	2L_8252792_SNP [dm3] 2L_8252792_SNP [dm6]	A	T	6.310e^-5	0.783	INTRON CG8086
2L	20807508	2L_20807508_SNP [dm3] 2L_20807508_SNP [dm6]	T	A	6.381e^-5	0.783	INTRON CG9328
X	7005963	X_7005963_SNP [dm3] X_7111930_SNP [dm6]	A	T	6.387e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22049038	3R_22049038_SNP [dm3] 3R_26223316_SNP [dm6]	C	T	6.387e^-5	0.783	INTERGENIC
2L	7847286	2L_7847286_SNP [dm3] 2L_7847286_SNP [dm6]	G	T	6.424e^-5	0.783	SYNONYMOUS_CODING CG14535
3L	16022306	3L_16022306_SNP [dm3] 3L_16029206_SNP [dm6]	A	T	6.529e^-5	0.783	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3970283	2L_3970283_SNP [dm3] 2L_3970283_SNP [dm6]	A	T	6.550e^-5	0.783	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	8297952	2L_8297952_SNP [dm3] 2L_8297952_SNP [dm6]	T	C	6.561e^-5	0.783	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20808040	2L_20808040_SNP [dm3] 2L_20808040_SNP [dm6]	G	T	6.614e^-5	0.783	INTRON CG9328
X	4485955	X_4485955_SNP [dm3] X_4591922_SNP [dm6]	T	C	6.625e^-5	0.783	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16243773	2R_16243773_INS [dm3] 2R_20356268_INS [dm6]	T	TACACAAA	6.632e^-5	0.783	INTERGENIC
X	10498923	X_10498923_SNP [dm3] X_10604890_SNP [dm6]	C	T	6.663e^-5	0.783	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna
2L	20807527	2L_20807527_SNP [dm3] 2L_20807527_SNP [dm6]	C	T	6.723e^-5	0.783	INTRON CG9328
3R	6867234	3R_6867234_SNP [dm3] 3R_11041512_SNP [dm6]	A	G	6.806e^-5	0.783	INTRON CG34114
2L	9822121	2L_9822121_SNP [dm3] 2L_9822121_SNP [dm6]	G	A	6.816e^-5	0.783	INTRON nAChRalpha6
2L	12412034	2L_12412034_SNP [dm3] 2L_12412034_SNP [dm6]	T	C	6.872e^-5	0.783	INTRON vir-1
3L	22321908	3L_22321908_SNP [dm3] 3L_22328808_SNP [dm6]	C	A	6.914e^-5	0.783	UPSTREAM CG32450 INTRON Ten-m	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11178297	X_11178297_SNP [dm3] X_11284264_SNP [dm6]	C	G	6.939e^-5	0.783	INTRON CG44422
2L	9854447	2L_9854447_SNP [dm3] 2L_9854447_SNP [dm6]	C	T	6.971e^-5	0.783	INTRON nAChRalpha6
2R	1919997	2R_1919997_SNP [dm3] 2R_6032492_SNP [dm6]	C	A	7.011e^-5	0.783	NON_SYNONYMOUS_CODING SCAP
3R	6655835	3R_6655835_SNP [dm3] 3R_10830113_SNP [dm6]	G	A	7.030e^-5	0.783	INTRON Cad86C
2L	12412040	2L_12412040_SNP [dm3] 2L_12412040_SNP [dm6]	C	G	7.035e^-5	0.783	INTRON vir-1
3R	4456228	3R_4456228_SNP [dm3] 3R_8630506_SNP [dm6]	G	A	7.059e^-5	0.783	DOWNSTREAM 5-HT2B INTERGENIC
3R	5247455	3R_5247455_SNP [dm3] 3R_9421733_SNP [dm6]	C	G	7.059e^-5	0.783	INTRON ps
2R	12142398	2R_12142398_SNP [dm3] 2R_16254893_SNP [dm6]	G	A	7.110e^-5	0.784	SYNONYMOUS_CODING CngA
X	20480453	X_20480453_SNP [dm3] X_20609426_SNP [dm6]	G	A	7.317e^-5	0.789	INTRON RunxA	TF binding site mE1_TFBS_chinmo
2L	20676556	2L_20676556_SNP [dm3] 2L_20676556_SNP [dm6]	G	A	7.324e^-5	0.789	SYNONYMOUS_CODING ik2 UPSTREAM CG31678	TF binding site BDTNP1_TFBS_dl
X	5209691	X_5209691_SNP [dm3] X_5315658_SNP [dm6]	C	T	7.344e^-5	0.789	NON_SYNONYMOUS_CODING CG15930 DOWNSTREAM CG4198	TF binding site mE1_TFBS_chinmo
2L	15616609	2L_15616609_SNP [dm3] 2L_15616609_SNP [dm6]	C	A	7.383e^-5	0.789	UPSTREAM CG11865 & 1 other INTERGENIC
3L	1778022	3L_1778022_SNP [dm3] 3L_1778022_SNP [dm6]	G	A	7.398e^-5	0.789	SYNONYMOUS_CODING mRpL46 UPSTREAM CG2021 DOWNSTREAM alpha-Spec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	15697530	2R_15697530_SNP [dm3] 2R_19810025_SNP [dm6]	T	C	7.404e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	7561359	2R_7561359_SNP [dm3] 2R_11673854_SNP [dm6]	T	C	7.521e^-5	0.795	INTRON Roc2 & 1 other
3L	22147147	3L_22147147_SNP [dm3] 3L_22154047_SNP [dm6]	C	T	7.605e^-5	0.795	INTRON olf413
2L	8803104	2L_8803104_SNP [dm3] 2L_8803104_SNP [dm6]	C	T	7.623e^-5	0.795	INTERGENIC
X	17622701	X_17622701_SNP [dm3] X_17728668_SNP [dm6]	C	T	7.662e^-5	0.795	INTRON CG42684
3L	22492747	3L_22492747_SNP [dm3] 3L_22499647_SNP [dm6]	C	A	7.711e^-5	0.795	DOWNSTREAM CR45431 INTERGENIC
3L	22499700	3L_22499700_SNP [dm3] 3L_22506600_SNP [dm6]	A	T	7.760e^-5	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22499733	3L_22499733_SNP [dm3] 3L_22506633_SNP [dm6]	G	A	7.760e^-5	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10537630	2L_10537630_SNP [dm3] 2L_10537630_SNP [dm6]	G	C	7.834e^-5	0.798	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4696052	2L_4696052_SNP [dm3] 2L_4696052_SNP [dm6]	A	G	7.995e^-5	0.81	INTRON CG34351	TF binding site mE1_TFBS_cad
3L	4000823	3L_4000823_SNP [dm3] 3L_4000823_SNP [dm6]	C	G	8.194e^-5	0.826	INTERGENIC
X	7006006	X_7006006_SNP [dm3] X_7111973_SNP [dm6]	A	G	8.331e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7306738	3L_7306738_SNP [dm3] 3L_7313638_SNP [dm6]	T	C	8.456e^-5	0.826	UPSTREAM unc-13-4A INTERGENIC
2R	15697580	2R_15697580_SNP [dm3] 2R_19810075_SNP [dm6]	C	A	8.529e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26127249	3R_26127249_SNP [dm3] 3R_30301527_SNP [dm6]	G	A	8.576e^-5	0.826	INTRON hdc
X	21188804	X_21188804_DEL [dm3] X_21317777_DEL [dm6]	ATCAGATTA	A	8.581e^-5	0.826	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
2R	11665600	2R_11665600_SNP [dm3] 2R_15778095_SNP [dm6]	A	T	8.696e^-5	0.826	INTRON Zasp52
3L	22656706	3L_22656706_SNP [dm3] 3L_22663606_SNP [dm6]	A	G	8.711e^-5	0.826	INTERGENIC
2L	20944473	2L_20944473_SNP [dm3] 2L_20944473_SNP [dm6]	G	C	8.711e^-5	0.826	INTERGENIC
3R	19708663	3R_19708663_SNP [dm3] 3R_23882941_SNP [dm6]	T	A	8.763e^-5	0.826	INTRON Pli
2L	7898094	2L_7898094_SNP [dm3] 2L_7898094_SNP [dm6]	C	T	8.789e^-5	0.826	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	22495475	3L_22495475_SNP [dm3] 3L_22502375_SNP [dm6]	C	T	8.832e^-5	0.826	UTR_3_PRIME CG43312 DOWNSTREAM CG43331
2R	20343756	2R_20343756_SNP [dm3] 2R_24456233_SNP [dm6]	A	C	8.852e^-5	0.826	INTRON CG13579
2R	15697526	2R_15697526_SNP [dm3] 2R_19810021_SNP [dm6]	A	G	8.869e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2L	20807587	2L_20807587_SNP [dm3] 2L_20807587_SNP [dm6]	A	G	8.880e^-5	0.826	INTRON CG9328
3L	6280133	3L_6280133_SNP [dm3] 3L_6287033_SNP [dm6]	G	A	8.953e^-5	0.826	INTERGENIC
2R	7315329	2R_7315329_SNP [dm3] 2R_11427824_SNP [dm6]	G	C	8.974e^-5	0.826	UPSTREAM Drip INTRON Drip
2R	19927685	2R_19927685_SNP [dm3] 2R_24040162_SNP [dm6]	C	T	9.069e^-5	0.826	SYNONYMOUS_CODING IntS1
3L	22123480	3L_22123480_SNP [dm3] 3L_22130380_SNP [dm6]	A	T	9.104e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	19358599	3R_19358599_SNP [dm3] 3R_23532877_SNP [dm6]	A	G	9.128e^-5	0.826	DOWNSTREAM CG10170 INTERGENIC
2R	1908717	2R_1908717_DEL [dm3] 2R_6021212_DEL [dm6]	TTCT	T	9.133e^-5	0.826	UTR_3_PRIME dream DOWNSTREAM Pngl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10963701	2R_10963701_SNP [dm3] 2R_15076196_SNP [dm6]	A	G	9.159e^-5	0.826	INTERGENIC
2R	12400497	2R_12400497_SNP [dm3] 2R_16512992_SNP [dm6]	C	T	9.193e^-5	0.826	INTRON Sema-2a
X	16135541	X_16135541_SNP [dm3] X_16241508_SNP [dm6]	C	G	9.214e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19358531	3R_19358531_SNP [dm3] 3R_23532809_SNP [dm6]	C	T	9.281e^-5	0.826	DOWNSTREAM CG10170 INTERGENIC
X	8164327	X_8164327_SNP [dm3] X_8270294_SNP [dm6]	G	C	9.293e^-5	0.826	UTR_3_PRIME Corp INTRON CG1632	TF binding site BDTNP1_TFBS_dl
3L	22499761	3L_22499761_SNP [dm3] 3L_22506661_SNP [dm6]	G	A	9.377e^-5	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7901546	2L_7901546_SNP [dm3] 2L_7901546_SNP [dm6]	A	G	9.554e^-5	0.831	INTRON Snoo
3L	1768665	3L_1768665_SNP [dm3] 3L_1768665_SNP [dm6]	A	T	9.563e^-5	0.831	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11029209	2R_11029209_SNP [dm3] 2R_15141704_SNP [dm6]	T	C	9.626e^-5	0.831	DOWNSTREAM chn INTRON chn	TF binding site mE1_TFBS_cad
3L	22501953	3L_22501953_INS [dm3] 3L_22508853_INS [dm6]	G	GA	9.656e^-5	0.831	INTERGENIC
2L	10042633	2L_10042633_SNP [dm3] 2L_10042633_SNP [dm6]	G	A	9.674e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11494068	2R_11494068_SNP [dm3] 2R_15606563_SNP [dm6]	C	T	9.706e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7848497	2L_7848497_SNP [dm3] 2L_7848497_SNP [dm6]	A	C	9.744e^-5	0.831	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
X	4775551	X_4775551_SNP [dm3] X_4881518_SNP [dm6]	C	T	9.797e^-5	0.831	INTRON CG42594	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11453843	3L_11453843_SNP [dm3] 3L_11460743_SNP [dm6]	T	C	9.804e^-5	0.831	INTERGENIC
3L	22494511	3L_22494511_SNP [dm3] 3L_22501411_SNP [dm6]	G	T	9.833e^-5	0.831	UPSTREAM CG43312 INTERGENIC
2L	3971429	2L_3971429_SNP [dm3] 2L_3971429_SNP [dm6]	T	C	9.952e^-5	0.837	INTRON fred
2L	3969898	2L_3969898_SNP [dm3] 2L_3969898_SNP [dm6]	G	A	1.004e^-4	0.84	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	22166153	3L_22166153_SNP [dm3] 3L_22173053_SNP [dm6]	G	A	1.008e^-4	0.84	INTRON olf413
2L	2263778	2L_2263778_MNP [dm3] 2L_2263778_MNP [dm6]	TTC	GAA	1.014e^-4	0.841	DOWNSTREAM CG34049 INTRON CG4270
3R	15642930	3R_15642930_SNP [dm3] 3R_19817208_SNP [dm6]	G	A	1.024e^-4	0.846	INTRON bnl	TF binding site BDTNP1_TFBS_twi
3R	10272292	3R_10272292_SNP [dm3] 3R_14446570_SNP [dm6]	C	T	1.032e^-4	0.849	INTRON cv-c	TF binding site BDTNP1_TFBS_da
2L	21039471	2L_21039471_SNP [dm3] 2L_21039471_SNP [dm6]	A	G	1.037e^-4	0.849	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8254830	2L_8254830_SNP [dm3] 2L_8254830_SNP [dm6]	C	A	1.045e^-4	0.852	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2L	10537626	2L_10537626_SNP [dm3] 2L_10537626_SNP [dm6]	T	A	1.058e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	17288409	3R_17288409_SNP [dm3] 3R_21462687_SNP [dm6]	G	T	1.059e^-4	0.855	INTERGENIC
2R	11145609	2R_11145609_SNP [dm3] 2R_15258104_SNP [dm6]	T	C	1.062e^-4	0.855	UTR_3_PRIME scb UPSTREAM ItgalphaPS4
2R	15079340	2R_15079340_INS [dm3] 2R_19191835_INS [dm6]	A	AA	1.078e^-4	0.864	INTRON hppy
3L	4120365	3L_4120365_SNP [dm3] 3L_4120365_SNP [dm6]	T	A	1.088e^-4	0.865	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3L	16199052	3L_16199052_SNP [dm3] 3L_16205952_SNP [dm6]	T	A	1.100e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15788328	2R_15788328_SNP [dm3] 2R_19900823_SNP [dm6]	A	G	1.101e^-4	0.865	INTERGENIC
2R	5310129	2R_5310129_SNP [dm3] 2R_9422624_SNP [dm6]	A	T	1.102e^-4	0.865	INTRON CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7005979	X_7005979_SNP [dm3] X_7111946_SNP [dm6]	G	A	1.113e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5449451	3R_5449451_SNP [dm3] 3R_9623729_SNP [dm6]	T	C	1.118e^-4	0.865	SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22194961	3L_22194961_SNP [dm3] 3L_22201861_SNP [dm6]	G	A	1.122e^-4	0.865	INTRON olf413
3L	10490532	3L_10490532_SNP [dm3] 3L_10497432_SNP [dm6]	C	A	1.122e^-4	0.865	INTRON A2bp1
X	8184901	X_8184901_SNP [dm3] X_8290868_SNP [dm6]	A	G	1.143e^-4	0.865	INTRON nAChRalpha3
2R	4066876	2R_4066876_SNP [dm3] 2R_8179371_SNP [dm6]	C	T	1.149e^-4	0.865	INTRON LRP1
2L	7848320	2L_7848320_SNP [dm3] 2L_7848320_SNP [dm6]	A	T	1.150e^-4	0.865	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
2R	2155829	2R_2155829_INS [dm3] 2R_6268324_INS [dm6]	A	AA	1.151e^-4	0.865	INTERGENIC	transposable element FlyBase
3R	26030474	3R_26030474_SNP [dm3] 3R_30204752_SNP [dm6]	C	G	1.166e^-4	0.865	INTERGENIC
X	20515907	X_20515907_SNP [dm3] X_20644880_SNP [dm6]	C	T	1.183e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	15455846	2R_15455846_SNP [dm3] 2R_19568341_SNP [dm6]	T	A	1.189e^-4	0.865	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8253811	2L_8253811_SNP [dm3] 2L_8253811_SNP [dm6]	A	G	1.191e^-4	0.865	UPSTREAM CG8086 INTRON CG8086
2L	20677096	2L_20677096_SNP [dm3] 2L_20677096_SNP [dm6]	T	C	1.193e^-4	0.865	SYNONYMOUS_CODING ik2	TF binding site mE1_TFBS_sens
2R	1731716	2R_1731716_SNP [dm3] 2R_5844211_SNP [dm6]	T	C	1.196e^-4	0.865	INTRON dpr12
2L	6512690	2L_6512690_SNP [dm3] 2L_6512690_SNP [dm6]	C	T	1.200e^-4	0.865	INTRON CG31637
3L	1807241	3L_1807241_SNP [dm3] 3L_1807241_SNP [dm6]	T	C	1.205e^-4	0.865	UPSTREAM CR45687 & 1 other DOWNSTREAM CG42676 INTERGENIC
2L	16837610	2L_16837610_SNP [dm3] 2L_16837610_SNP [dm6]	C	A	1.208e^-4	0.865	UPSTREAM SclB & 2 others INTERGENIC
2L	7902242	2L_7902242_SNP [dm3] 2L_7902242_SNP [dm6]	G	A	1.223e^-4	0.865	INTRON Snoo
2L	8292678	2L_8292678_SNP [dm3] 2L_8292678_SNP [dm6]	T	C	1.249e^-4	0.865	INTRON Btk29A	TF binding site mE1_TFBS_cnc
2R	10039948	2R_10039948_INS [dm3] 2R_14152443_INS [dm6]	T	TT	1.256e^-4	0.865	UTR_5_PRIME Rcd1 UPSTREAM pea INTRON Rcd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11029600	2R_11029600_SNP [dm3] 2R_15142095_SNP [dm6]	T	C	1.258e^-4	0.865	SYNONYMOUS_CODING chn UTR_3_PRIME chn	TF binding site mE1_TFBS_cad
X	10193184	X_10193184_DEL [dm3] X_10299151_DEL [dm6]	TC	A	1.261e^-4	0.865	INTRON alpha-Man-I
3R	6539705	3R_6539705_INS [dm3] 3R_10713983_INS [dm6]	C	CGC	1.278e^-4	0.865	UPSTREAM CG4073 INTERGENIC
2L	8298002	2L_8298002_SNP [dm3] 2L_8298002_SNP [dm6]	T	A	1.283e^-4	0.865	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8297964	2L_8297964_SNP [dm3] 2L_8297964_SNP [dm6]	G	A	1.284e^-4	0.865	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4593359	2L_4593359_SNP [dm3] 2L_4593359_SNP [dm6]	A	C	1.285e^-4	0.865	INTRON dp	TF binding site BDTNP1_TFBS_da
2R	11665337	2R_11665337_SNP [dm3] 2R_15777832_SNP [dm6]	A	C	1.285e^-4	0.865	INTRON Zasp52
X	5902818	X_5902818_DEL [dm3] X_6008785_DEL [dm6]	TACAGCTCT	T	1.286e^-4	0.865	UTR_3_PRIME mab-21
2L	4593343	2L_4593343_DEL [dm3] 2L_4593343_DEL [dm6]	TG	T	1.294e^-4	0.865	INTRON dp	TF binding site BDTNP1_TFBS_da
3R	19708353	3R_19708353_SNP [dm3] 3R_23882631_SNP [dm6]	T	C	1.309e^-4	0.865	INTRON Pli
2R	17432032	2R_17432032_SNP [dm3] 2R_21544527_SNP [dm6]	G	A	1.313e^-4	0.865	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20343716	2R_20343716_SNP [dm3] 2R_24456193_SNP [dm6]	A	C	1.316e^-4	0.865	INTRON CG13579
X	6386960	X_6386960_SNP [dm3] X_6492927_SNP [dm6]	G	A	1.317e^-4	0.865	INTRON CG42340
3L	13831386	3L_13831386_SNP [dm3] 3L_13838286_SNP [dm6]	G	A	1.332e^-4	0.865	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5443035	3R_5443035_SNP [dm3] 3R_9617313_SNP [dm6]	A	G	1.332e^-4	0.865	INTRON CG8312
X	8164547	X_8164547_SNP [dm3] X_8270514_SNP [dm6]	G	A	1.337e^-4	0.865	SYNONYMOUS_CODING Corp INTRON CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	6647723	3R_6647723_SNP [dm3] 3R_10822001_SNP [dm6]	A	C	1.357e^-4	0.865	INTERGENIC
2L	13029327	2L_13029327_SNP [dm3] 2L_13029327_SNP [dm6]	T	C	1.360e^-4	0.865	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	6548593	3R_6548593_SNP [dm3] 3R_10722871_SNP [dm6]	A	T	1.370e^-4	0.865	INTERGENIC
3L	22501222	3L_22501222_SNP [dm3] 3L_22508122_SNP [dm6]	C	T	1.373e^-4	0.865	INTERGENIC	transposable element FlyBase
2R	4066799	2R_4066799_SNP [dm3] 2R_8179294_SNP [dm6]	G	C	1.374e^-4	0.865	INTRON LRP1
2R	1934547	2R_1934547_SNP [dm3] 2R_6047042_SNP [dm6]	G	C	1.378e^-4	0.865	UPSTREAM CG34211 DOWNSTREAM CR44130 INTERGENIC
3L	15501902	3L_15501902_SNP [dm3] 3L_15508802_SNP [dm6]	T	C	1.385e^-4	0.865	UPSTREAM Z600 & 3 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15768507	3L_15768507_SNP [dm3] 3L_15775407_SNP [dm6]	C	T	1.386e^-4	0.865	INTERGENIC
X	4485848	X_4485848_SNP [dm3] X_4591815_SNP [dm6]	A	T	1.388e^-4	0.865	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12575469	2R_12575469_SNP [dm3] 2R_16687964_SNP [dm6]	T	C	1.393e^-4	0.865	INTRON CG30463
3L	22501943	3L_22501943_DEL [dm3] 3L_22508843_DEL [dm6]	AGGGT	G	1.394e^-4	0.865	INTERGENIC
X	12380309	X_12380309_SNP [dm3] X_12486276_SNP [dm6]	G	A	1.405e^-4	0.865	UPSTREAM Cpr11A INTERGENIC
3L	22510960	3L_22510960_SNP [dm3] 3L_22517860_SNP [dm6]	G	T	1.406e^-4	0.865	DOWNSTREAM mir-957 INTERGENIC
2L	12412106	2L_12412106_SNP [dm3] 2L_12412106_SNP [dm6]	A	G	1.406e^-4	0.865	INTRON vir-1
2L	1689035	2L_1689035_SNP [dm3] 2L_1689035_SNP [dm6]	C	A	1.408e^-4	0.865	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22051330	3R_22051330_SNP [dm3] 3R_26225608_SNP [dm6]	C	T	1.412e^-4	0.865	INTERGENIC
3L	10222706	3L_10222706_SNP [dm3] 3L_10229606_SNP [dm6]	A	G	1.414e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	2114938	2R_2114938_SNP [dm3] 2R_6227433_SNP [dm6]	T	G	1.416e^-4	0.865	DOWNSTREAM tomboy40 INTRON bin3
2L	12412108	2L_12412108_SNP [dm3] 2L_12412108_SNP [dm6]	T	C	1.416e^-4	0.865	INTRON vir-1
2R	5302486	2R_5302486_SNP [dm3] 2R_9414981_SNP [dm6]	A	T	1.419e^-4	0.865	UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10828616	2R_10828616_SNP [dm3] 2R_14941111_SNP [dm6]	G	A	1.419e^-4	0.865	DOWNSTREAM Lap1 INTERGENIC
2R	10249474	2R_10249474_SNP [dm3] 2R_14361969_SNP [dm6]	G	C	1.424e^-4	0.865	UTR_5_PRIME Arc2 UPSTREAM CR10102
2L	8254733	2L_8254733_DEL [dm3] 2L_8254733_DEL [dm6]	TATATT	A	1.425e^-4	0.865	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2L	8225051	2L_8225051_SNP [dm3] 2L_8225051_SNP [dm6]	G	T	1.441e^-4	0.865	INTRON Pvr
3L	1789336	3L_1789336_SNP [dm3] 3L_1789336_SNP [dm6]	A	C	1.443e^-4	0.865	DOWNSTREAM dlt INTRON alpha-Spec
2R	14319883	2R_14319883_SNP [dm3] 2R_18432378_SNP [dm6]	G	A	1.452e^-4	0.865	INTRON CG30118
3R	20378183	3R_20378183_SNP [dm3] 3R_24552461_SNP [dm6]	T	G	1.457e^-4	0.865	INTRON Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4169805	2L_4169805_SNP [dm3] 2L_4169805_SNP [dm6]	C	T	1.459e^-4	0.865	INTERGENIC
3L	8146712	3L_8146712_SNP [dm3] 3L_8153612_SNP [dm6]	C	G	1.460e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16970742	2R_16970742_SNP [dm3] 2R_21083237_SNP [dm6]	T	C	1.463e^-4	0.865	INTRON Treh
2R	1934289	2R_1934289_SNP [dm3] 2R_6046784_SNP [dm6]	G	T	1.469e^-4	0.865	UPSTREAM CG34211 DOWNSTREAM CR44130 INTERGENIC
3R	19906098	3R_19906098_SNP [dm3] 3R_24080376_SNP [dm6]	C	T	1.476e^-4	0.865	INTRON 4EHP
3L	20337406	3L_20337406_DEL [dm3] 3L_20344306_DEL [dm6]	GCCAAAAACTATTTAAAAGA...	G	1.485e^-4	0.865	UTR_3_PRIME Spn77Bc UPSTREAM CR45385 DOWNSTREAM Spn77Bc INTRAGENIC Spn77Bc INTERGENIC
3L	22501220	3L_22501220_SNP [dm3] 3L_22508120_SNP [dm6]	C	T	1.487e^-4	0.865	INTERGENIC	transposable element FlyBase
2R	11029229	2R_11029229_SNP [dm3] 2R_15141724_SNP [dm6]	C	T	1.489e^-4	0.865	INTRON chn	TF binding site mE1_TFBS_cad
X	17538449	X_17538449_SNP [dm3] X_17644416_SNP [dm6]	T	G	1.502e^-4	0.865	INTRON RhoGAPp190
2L	2599206	2L_2599206_SNP [dm3] 2L_2599206_SNP [dm6]	T	A	1.506e^-4	0.865	INTRON CR44790
2L	18162155	2L_18162155_SNP [dm3] 2L_18162155_SNP [dm6]	T	C	1.509e^-4	0.865	INTRON CG42750
3L	6254854	3L_6254854_SNP [dm3] 3L_6261754_SNP [dm6]	C	G	1.518e^-4	0.865	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl
3R	10419149	3R_10419149_SNP [dm3] 3R_14593427_SNP [dm6]	A	C	1.519e^-4	0.865	INTRON stumps	TF binding site mE1_TFBS_cad
3R	25153216	3R_25153216_INS [dm3] 3R_29327494_INS [dm6]	T	TAT	1.524e^-4	0.865	INTERGENIC
2L	5508524	2L_5508524_DEL [dm3] 2L_5508524_DEL [dm6]	AA	A	1.556e^-4	0.865	INTERGENIC
2R	16970670	2R_16970670_SNP [dm3] 2R_21083165_SNP [dm6]	T	C	1.559e^-4	0.865	INTRON Treh
2R	9785297	2R_9785297_SNP [dm3] 2R_13897792_SNP [dm6]	A	G	1.562e^-4	0.865	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16361283	2L_16361283_SNP [dm3] 2L_16361283_SNP [dm6]	A	C	1.567e^-4	0.865	INTERGENIC
2L	14799512	2L_14799512_SNP [dm3] 2L_14799512_SNP [dm6]	C	A	1.568e^-4	0.865	INTERGENIC
3L	22499762	3L_22499762_SNP [dm3] 3L_22506662_SNP [dm6]	C	A	1.570e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5677410	3R_5677410_SNP [dm3] 3R_9851688_SNP [dm6]	G	A	1.571e^-4	0.865	INTRON Teh1
3R	19906101	3R_19906101_SNP [dm3] 3R_24080379_SNP [dm6]	T	C	1.578e^-4	0.865	INTRON 4EHP
2L	8254531	2L_8254531_SNP [dm3] 2L_8254531_SNP [dm6]	C	T	1.594e^-4	0.865	INTRON CG8086	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3562237	X_3562237_SNP [dm3] X_3668204_SNP [dm6]	T	C	1.596e^-4	0.865	DOWNSTREAM Parg INTRON Ilp7
3L	12551272	3L_12551272_INS [dm3] 3L_12558172_INS [dm6]	C	CTATGG	1.597e^-4	0.865	INTRON sowah
2R	19961156	2R_19961156_SNP [dm3] 2R_24073633_SNP [dm6]	C	T	1.598e^-4	0.865	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
2L	20944474	2L_20944474_SNP [dm3] 2L_20944474_SNP [dm6]	T	A	1.602e^-4	0.865	INTERGENIC
3L	22503462	3L_22503462_SNP [dm3] 3L_22510362_SNP [dm6]	C	T	1.604e^-4	0.865	EXON CR45429	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7846538	2L_7846538_SNP [dm3] 2L_7846538_SNP [dm6]	T	G	1.609e^-4	0.865	UTR_3_PRIME CG14535
2L	9915701	2L_9915701_SNP [dm3] 2L_9915701_SNP [dm6]	A	G	1.611e^-4	0.865	SYNONYMOUS_CODING yip2 DOWNSTREAM Srp54
2L	16837601	2L_16837601_SNP [dm3] 2L_16837601_SNP [dm6]	A	C	1.611e^-4	0.865	UPSTREAM SclB & 2 others INTERGENIC
2L	3971947	2L_3971947_SNP [dm3] 2L_3971947_SNP [dm6]	G	A	1.613e^-4	0.865	INTRON fred
2L	3440563	2L_3440563_SNP [dm3] 2L_3440563_SNP [dm6]	C	T	1.626e^-4	0.865	INTERGENIC
2L	8253281	2L_8253281_DEL [dm3] 2L_8253281_DEL [dm6]	GCCG	G	1.639e^-4	0.865	UPSTREAM CG8086 INTRON CG8086
3L	22351677	3L_22351677_SNP [dm3] 3L_22358577_SNP [dm6]	T	G	1.641e^-4	0.865	INTRON Ten-m
3R	19897680	3R_19897680_SNP [dm3] 3R_24071958_SNP [dm6]	A	G	1.642e^-4	0.865	INTRON 4EHP
2L	16837584	2L_16837584_SNP [dm3] 2L_16837584_SNP [dm6]	T	G	1.650e^-4	0.865	UPSTREAM SclB & 2 others INTERGENIC
2R	13991470	2R_13991470_SNP [dm3] 2R_18103965_SNP [dm6]	T	G	1.651e^-4	0.865	INTRON CG5756	TF binding site mE1_TFBS_cad
3R	22088898	3R_22088898_SNP [dm3] 3R_26263176_SNP [dm6]	C	T	1.652e^-4	0.865	INTRON CG6154
2L	8622881	2L_8622881_SNP [dm3] 2L_8622881_SNP [dm6]	T	C	1.653e^-4	0.865	INTRON Sema-1a
2L	20837031	2L_20837031_SNP [dm3] 2L_20837031_SNP [dm6]	G	A	1.657e^-4	0.865	INTRON Spn38F	TF binding site mE1_TFBS_sens
3R	17638603	3R_17638603_SNP [dm3] 3R_21812881_SNP [dm6]	T	C	1.658e^-4	0.865	INTRON CASK
2R	2114989	2R_2114989_SNP [dm3] 2R_6227484_SNP [dm6]	T	A	1.660e^-4	0.865	DOWNSTREAM tomboy40 INTRON bin3
2R	4721277	2R_4721277_SNP [dm3] 2R_8833772_SNP [dm6]	G	T	1.664e^-4	0.865	INTRON sns	TF binding site mE1_TFBS_cad
3L	6255493	3L_6255493_DEL [dm3] 3L_6262393_DEL [dm6]	ACGG	A	1.669e^-4	0.865	DOWNSTREAM CR44522 INTRON ImpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12412104	2L_12412104_SNP [dm3] 2L_12412104_SNP [dm6]	T	A	1.676e^-4	0.865	INTRON vir-1
3L	22503491	3L_22503491_SNP [dm3] 3L_22510391_SNP [dm6]	C	G	1.678e^-4	0.865	EXON CR45429	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5248149	3R_5248149_INS [dm3] 3R_9422427_INS [dm6]	T	TTT	1.701e^-4	0.865	INTRON ps	TF binding site BDTNP1_TFBS_dl
2L	3971283	2L_3971283_SNP [dm3] 2L_3971283_SNP [dm6]	T	G	1.709e^-4	0.865	INTRON fred
X	19737729	X_19737729_SNP [dm3] X_19843696_SNP [dm6]	A	G	1.710e^-4	0.865	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	10110210	2L_10110210_SNP [dm3] 2L_10110210_SNP [dm6]	T	G	1.715e^-4	0.865	INTRON CG44153 & 1 other
X	8317635	X_8317635_INS [dm3] X_8423602_INS [dm6]	A	AA	1.715e^-4	0.865	UTR_5_PRIME Trf2 INTRON Trf2	TF binding site BDTNP1_TFBS_dl
2L	7848404	2L_7848404_SNP [dm3] 2L_7848404_SNP [dm6]	G	A	1.718e^-4	0.865	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
2L	7846113	2L_7846113_SNP [dm3] 2L_7846113_SNP [dm6]	G	A	1.721e^-4	0.865	UTR_3_PRIME CG14535
2R	16639196	2R_16639196_SNP [dm3] 2R_20751691_SNP [dm6]	C	T	1.724e^-4	0.865	SYNONYMOUS_CODING CG34201 UPSTREAM CG34202	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10249528	3R_10249528_SNP [dm3] 3R_14423806_SNP [dm6]	A	G	1.725e^-4	0.865	INTRON cv-c
3R	6567176	3R_6567176_SNP [dm3] 3R_10741454_SNP [dm6]	A	G	1.726e^-4	0.865	SYNONYMOUS_CODING TkR86C
2L	13031103	2L_13031103_SNP [dm3] 2L_13031103_SNP [dm6]	A	G	1.726e^-4	0.865	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	19307611	2R_19307611_SNP [dm3] 2R_23420088_SNP [dm6]	A	G	1.729e^-4	0.865	UPSTREAM CG9812 INTERGENIC
3L	10283074	3L_10283074_SNP [dm3] 3L_10289974_SNP [dm6]	A	T	1.732e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22490710	3L_22490710_SNP [dm3] 3L_22497610_SNP [dm6]	G	C	1.737e^-4	0.865	UPSTREAM CR45430 & 1 other INTERGENIC
2L	7846543	2L_7846543_SNP [dm3] 2L_7846543_SNP [dm6]	T	C	1.740e^-4	0.865	UTR_3_PRIME CG14535
3R	7380716	3R_7380716_SNP [dm3] 3R_11554994_SNP [dm6]	A	G	1.742e^-4	0.865	DOWNSTREAM CG14708 INTERGENIC
2R	12144601	2R_12144601_DEL [dm3] 2R_16257096_DEL [dm6]	AGCACAAGTGG...	A	1.758e^-4	0.865	INTRON CngA
3L	10491232	3L_10491232_SNP [dm3] 3L_10498132_SNP [dm6]	T	A	1.768e^-4	0.865	INTRON A2bp1
2R	19290168	2R_19290168_SNP [dm3] 2R_23402645_SNP [dm6]	C	G	1.772e^-4	0.865	UPSTREAM CG3520 INTERGENIC
3L	1115570	3L_1115570_SNP [dm3] 3L_1115570_SNP [dm6]	C	T	1.774e^-4	0.865	INTERGENIC
2L	10082722	2L_10082722_SNP [dm3] 2L_10082722_SNP [dm6]	T	C	1.780e^-4	0.865	INTRON CG44153
3R	14674622	3R_14674622_SNP [dm3] 3R_18848900_SNP [dm6]	C	T	1.781e^-4	0.865	UTR_5_PRIME CG18208	TF binding site mE1_TFBS_Trl
3L	6556486	3L_6556486_SNP [dm3] 3L_6563386_SNP [dm6]	A	G	1.783e^-4	0.865	UTR_3_PRIME jv INTRON CG18769	TF binding site mE1_TFBS_cad
3L	14191964	3L_14191964_SNP [dm3] 3L_14198864_SNP [dm6]	A	C	1.786e^-4	0.865	INTRON nuf
X	16747393	X_16747393_SNP [dm3] X_16853360_SNP [dm6]	A	C	1.787e^-4	0.865	UPSTREAM CG13003 INTRON CG13003
3R	22087637	3R_22087637_SNP [dm3] 3R_26261915_SNP [dm6]	C	T	1.788e^-4	0.865	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
3L	2292435	3L_2292435_SNP [dm3] 3L_2292435_SNP [dm6]	G	T	1.795e^-4	0.865	INTRON MsR2
3L	5640964	3L_5640964_SNP [dm3] 3L_5647864_SNP [dm6]	G	A	1.796e^-4	0.865	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11454033	3L_11454033_SNP [dm3] 3L_11460933_SNP [dm6]	G	A	1.798e^-4	0.865	INTERGENIC
3L	22500540	3L_22500540_INS [dm3] 3L_22507440_INS [dm6]	C	CGG	1.807e^-4	0.865	INTERGENIC	transposable element FlyBase
2L	8254749	2L_8254749_SNP [dm3] 2L_8254749_SNP [dm6]	G	T	1.808e^-4	0.865	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2R	6589623	2R_6589623_SNP [dm3] 2R_10702118_SNP [dm6]	C	T	1.816e^-4	0.865	INTRON stan
2L	10381143	2L_10381143_DEL [dm3] 2L_10381143_DEL [dm6]	TG	T	1.825e^-4	0.865	INTRON gny
3L	22501233	3L_22501233_SNP [dm3] 3L_22508133_SNP [dm6]	A	T	1.826e^-4	0.865	INTERGENIC	transposable element FlyBase
3L	22602254	3L_22602254_SNP [dm3] 3L_22609154_SNP [dm6]	G	C	1.831e^-4	0.865	INTRON CG14459
3L	2913267	3L_2913267_SNP [dm3] 3L_2913267_SNP [dm6]	G	A	1.835e^-4	0.865	INTRON Shab
3R	6678276	3R_6678276_SNP [dm3] 3R_10852554_SNP [dm6]	C	T	1.844e^-4	0.865	UPSTREAM CG4565 DOWNSTREAM CG42394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16441408	2R_16441408_SNP [dm3] 2R_20553903_SNP [dm6]	A	C	1.844e^-4	0.865	INTERGENIC
2L	21881890	2L_21881890_SNP [dm3] 2L_21881890_SNP [dm6]	T	C	1.845e^-4	0.865	INTERGENIC
2L	10537623	2L_10537623_SNP [dm3] 2L_10537623_SNP [dm6]	G	A	1.849e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	14191948	3L_14191948_SNP [dm3] 3L_14198848_SNP [dm6]	A	T	1.850e^-4	0.865	INTRON nuf
X	2226236	X_2226236_INS [dm3] X_2332203_INS [dm6]	A	AG	1.851e^-4	0.865	INTRON phl & 1 other
2R	17831951	2R_17831951_SNP [dm3] 2R_21944446_SNP [dm6]	A	T	1.852e^-4	0.865	SYNONYMOUS_CODING Fili
2L	3971329	2L_3971329_SNP [dm3] 2L_3971329_SNP [dm6]	G	A	1.853e^-4	0.865	INTRON fred
2R	9766578	2R_9766578_SNP [dm3] 2R_13879073_SNP [dm6]	T	C	1.858e^-4	0.865	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16763110	3R_16763110_SNP [dm3] 3R_20937388_SNP [dm6]	A	G	1.868e^-4	0.865	INTRON CG31191
2L	3971352	2L_3971352_SNP [dm3] 2L_3971352_SNP [dm6]	C	T	1.871e^-4	0.865	INTRON fred
3L	22148937	3L_22148937_SNP [dm3] 3L_22155837_SNP [dm6]	G	C	1.873e^-4	0.865	INTRON olf413	TF binding site mE1_TFBS_HSA
3L	18910982	3L_18910982_SNP [dm3] 3L_18917882_SNP [dm6]	A	G	1.884e^-4	0.865	INTRON CG6839
3L	10222726	3L_10222726_SNP [dm3] 3L_10229626_SNP [dm6]	T	C	1.892e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	4616908	X_4616908_SNP [dm3] X_4722875_SNP [dm6]	T	G	1.892e^-4	0.865	INTRON Proc-R
3R	25967236	3R_25967236_SNP [dm3] 3R_30141514_SNP [dm6]	G	A	1.894e^-4	0.865	INTRON AdoR	TF binding site mE1_TFBS_chinmo
X	4371887	X_4371887_SNP [dm3] X_4477854_SNP [dm6]	A	G	1.895e^-4	0.865	INTRON bi & 1 other
3L	1772440	3L_1772440_SNP [dm3] 3L_1772440_SNP [dm6]	C	T	1.896e^-4	0.865	UTR_3_PRIME CG13933 UPSTREAM Dhc62B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9253899	3L_9253899_SNP [dm3] 3L_9260799_SNP [dm6]	A	T	1.901e^-4	0.865	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
X	5572562	X_5572562_SNP [dm3] X_5678529_SNP [dm6]	C	G	1.903e^-4	0.865	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2L	3971356	2L_3971356_SNP [dm3] 2L_3971356_SNP [dm6]	A	G	1.917e^-4	0.865	INTRON fred
3R	19840100	3R_19840100_SNP [dm3] 3R_24014378_SNP [dm6]	C	G	1.927e^-4	0.865	INTRON KrT95D
2L	18824182	2L_18824182_SNP [dm3] 2L_18824182_SNP [dm6]	T	C	1.929e^-4	0.865	INTRON CG17323	TF binding site mE1_TFBS_cad
3L	7221727	3L_7221727_SNP [dm3] 3L_7228627_SNP [dm6]	A	C	1.929e^-4	0.865	INTERGENIC
X	21186502	X_21186502_SNP [dm3] X_21315475_SNP [dm6]	G	T	1.933e^-4	0.865	UPSTREAM Rpt6 INTRON CG1801	transposable element FlyBase
2L	7846116	2L_7846116_SNP [dm3] 2L_7846116_SNP [dm6]	T	C	1.942e^-4	0.865	UTR_3_PRIME CG14535
3L	10491461	3L_10491461_SNP [dm3] 3L_10498361_SNP [dm6]	A	T	1.943e^-4	0.865	INTRON A2bp1
2L	1059532	2L_1059532_SNP [dm3] 2L_1059532_SNP [dm6]	T	C	1.944e^-4	0.865	INTRON S
3L	13831478	3L_13831478_SNP [dm3] 3L_13838378_SNP [dm6]	G	T	1.948e^-4	0.865	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8253997	2L_8253997_SNP [dm3] 2L_8253997_SNP [dm6]	G	C	1.950e^-4	0.865	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
X	7006026	X_7006026_SNP [dm3] X_7111993_SNP [dm6]	A	C	1.970e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15616365	2L_15616365_SNP [dm3] 2L_15616365_SNP [dm6]	T	C	1.972e^-4	0.865	UPSTREAM CG11865 & 1 other INTERGENIC
3R	15642999	3R_15642999_SNP [dm3] 3R_19817277_SNP [dm6]	G	A	1.980e^-4	0.865	INTRON bnl	TF binding site BDTNP1_TFBS_twi
X	2241540	X_2241540_SNP [dm3] X_2347507_SNP [dm6]	G	A	1.986e^-4	0.865	NON_SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_sens
3R	19906105	3R_19906105_SNP [dm3] 3R_24080383_SNP [dm6]	T	C	1.991e^-4	0.865	INTRON 4EHP
2L	8258112	2L_8258112_SNP [dm3] 2L_8258112_SNP [dm6]	A	G	1.998e^-4	0.865	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC
2L	8256603	2L_8256603_SNP [dm3] 2L_8256603_SNP [dm6]	C	T	2.003e^-4	0.865	INTRON CG8086
3L	1396624	3L_1396624_SNP [dm3] 3L_1396624_SNP [dm6]	A	G	2.005e^-4	0.865	INTRON Ptp61F	TF binding site mE1_TFBS_HSA
X	17538460	X_17538460_SNP [dm3] X_17644427_SNP [dm6]	T	A	2.017e^-4	0.865	INTRON RhoGAPp190
3L	7221785	3L_7221785_SNP [dm3] 3L_7228685_SNP [dm6]	T	C	2.020e^-4	0.865	INTERGENIC
2L	1127580	2L_1127580_SNP [dm3] 2L_1127580_SNP [dm6]	G	A	2.037e^-4	0.865	INTRON Pino	TF binding site mE1_TFBS_sens
2R	9370988	2R_9370988_SNP [dm3] 2R_13483483_SNP [dm6]	G	A	2.038e^-4	0.865	UPSTREAM arr DOWNSTREAM cbc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10222736	3L_10222736_SNP [dm3] 3L_10229636_SNP [dm6]	T	C	2.041e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	5889189	2R_5889189_DEL [dm3] 2R_10001684_DEL [dm6]	GAAG	C	2.049e^-4	0.865	INTRON Pka-R2
3R	25537896	3R_25537896_SNP [dm3] 3R_29712174_SNP [dm6]	G	A	2.057e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8128134	X_8128134_SNP [dm3] X_8234101_SNP [dm6]	T	G	2.058e^-4	0.865	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	6548199	3R_6548199_SNP [dm3] 3R_10722477_SNP [dm6]	C	T	2.058e^-4	0.865	INTERGENIC
3R	17638601	3R_17638601_SNP [dm3] 3R_21812879_SNP [dm6]	T	A	2.059e^-4	0.865	INTRON CASK
2R	20344762	2R_20344762_SNP [dm3] 2R_24457239_SNP [dm6]	G	A	2.062e^-4	0.865	INTRON CG13579
2L	6774997	2L_6774997_SNP [dm3] 2L_6774997_SNP [dm6]	C	A	2.062e^-4	0.865	UPSTREAM CG17378 INTRON CG17378
2L	3813162	2L_3813162_SNP [dm3] 2L_3813162_SNP [dm6]	T	C	2.070e^-4	0.865	SYNONYMOUS_CODING CG3407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	22602255	3L_22602255_SNP [dm3] 3L_22609155_SNP [dm6]	C	T	2.074e^-4	0.865	INTRON CG14459
X	6520607	X_6520607_SNP [dm3] X_6626574_SNP [dm6]	G	C	2.079e^-4	0.865	INTRON pigs
2R	440296	2R_440296_SNP [dm3] 2R_4552791_SNP [dm6]	A	T	2.081e^-4	0.865	INTRON Stlk	transposable element FlyBase
2R	7153193	2R_7153193_SNP [dm3] 2R_11265688_SNP [dm6]	T	A	2.088e^-4	0.865	NON_SYNONYMOUS_CODING Cpr47Ee	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22498698	3L_22498698_SNP [dm3] 3L_22505598_SNP [dm6]	C	T	2.088e^-4	0.865	UPSTREAM CG43329 INTERGENIC
3L	2364821	3L_2364821_SNP [dm3] 3L_2364821_SNP [dm6]	A	T	2.089e^-4	0.865	INTERGENIC
3R	16204566	3R_16204566_SNP [dm3] 3R_20378844_SNP [dm6]	G	A	2.097e^-4	0.865	UTR_3_PRIME Gfrl DOWNSTREAM Gfrl
2R	1731723	2R_1731723_INS [dm3] 2R_5844218_INS [dm6]	G	GG	2.099e^-4	0.865	INTRON dpr12
2R	19103180	2R_19103180_SNP [dm3] 2R_23215657_SNP [dm6]	T	A	2.103e^-4	0.865	INTERGENIC
2L	13035492	2L_13035492_SNP [dm3] 2L_13035492_SNP [dm6]	T	C	2.104e^-4	0.865	INTRON CG9932
X	19737742	X_19737742_SNP [dm3] X_19843709_SNP [dm6]	C	T	2.106e^-4	0.865	INTRON pico	TF binding site BDTNP1_TFBS_da
3L	4338456	3L_4338456_INS [dm3] 3L_4338456_INS [dm6]	A	AGA	2.111e^-4	0.865	INTRON Cip4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6470007	2L_6470007_SNP [dm3] 2L_6470007_SNP [dm6]	C	T	2.118e^-4	0.865	INTRON mmy	TF binding site mE1_TFBS_cad
2L	2325647	2L_2325647_SNP [dm3] 2L_2325647_SNP [dm6]	A	G	2.120e^-4	0.865	INTRON CG9967 & 1 other
2R	10813257	2R_10813257_SNP [dm3] 2R_14925752_SNP [dm6]	G	A	2.128e^-4	0.865	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10272989	2R_10272989_SNP [dm3] 2R_14385484_SNP [dm6]	C	T	2.133e^-4	0.865	DOWNSTREAM Dh44-R1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5023186	2L_5023186_SNP [dm3] 2L_5023186_SNP [dm6]	T	C	2.133e^-4	0.865	INTRON vkg
3L	5801411	3L_5801411_SNP [dm3] 3L_5808311_SNP [dm6]	T	C	2.136e^-4	0.865	INTRON S6k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	8256176	2L_8256176_INS [dm3] 2L_8256176_INS [dm6]	A	AA	2.138e^-4	0.865	INTRON CG8086
2L	1018427	2L_1018427_SNP [dm3] 2L_1018427_SNP [dm6]	C	T	2.138e^-4	0.865	INTRON IA-2
X	20480294	X_20480294_SNP [dm3] X_20609267_SNP [dm6]	G	A	2.143e^-4	0.865	INTRON RunxA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8620474	2R_8620474_SNP [dm3] 2R_12732969_SNP [dm6]	C	A	2.148e^-4	0.865	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21860121	2L_21860121_SNP [dm3] 2L_21860121_SNP [dm6]	A	C	2.148e^-4	0.865	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_jumu
2L	21089629	2L_21089629_SNP [dm3] 2L_21089629_SNP [dm6]	T	C	2.153e^-4	0.865	SYNONYMOUS_CODING CG9259 UPSTREAM ppk13
3R	23268038	3R_23268038_SNP [dm3] 3R_27442316_SNP [dm6]	A	C	2.169e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	8841787	3L_8841787_SNP [dm3] 3L_8848687_SNP [dm6]	T	C	2.171e^-4	0.865	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7380529	3R_7380529_SNP [dm3] 3R_11554807_SNP [dm6]	T	C	2.172e^-4	0.865	UTR_3_PRIME CG14708
2R	16429671	2R_16429671_SNP [dm3] 2R_20542166_SNP [dm6]	A	C	2.172e^-4	0.865	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6255450	3L_6255450_SNP [dm3] 3L_6262350_SNP [dm6]	C	T	2.178e^-4	0.865	DOWNSTREAM CR44522 INTRON ImpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3971761	2L_3971761_SNP [dm3] 2L_3971761_SNP [dm6]	A	G	2.179e^-4	0.865	INTRON fred
3R	19906087	3R_19906087_MNP [dm3] 3R_24080365_MNP [dm6]	ACAGCGCA	CATTAATT	2.184e^-4	0.865	INTRON 4EHP
2L	7035567	2L_7035567_SNP [dm3] 2L_7035567_SNP [dm6]	A	C	2.188e^-4	0.865	SPLICE_SITE_REGION CG11266 INTRON CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	5300140	3R_5300140_SNP [dm3] 3R_9474418_SNP [dm6]	C	T	2.194e^-4	0.865	INTRON CG16779
X	8164565	X_8164565_SNP [dm3] X_8270532_SNP [dm6]	A	C	2.195e^-4	0.865	NON_SYNONYMOUS_CODING Corp INTRON CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	19737738	X_19737738_SNP [dm3] X_19843705_SNP [dm6]	G	T	2.208e^-4	0.865	INTRON pico	TF binding site BDTNP1_TFBS_da
X	19738224	X_19738224_SNP [dm3] X_19844191_SNP [dm6]	G	A	2.213e^-4	0.865	INTRON pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19358518	3R_19358518_SNP [dm3] 3R_23532796_SNP [dm6]	A	C	2.216e^-4	0.865	DOWNSTREAM CG10170 INTERGENIC
X	8642538	X_8642538_SNP [dm3] X_8748505_SNP [dm6]	T	A	2.219e^-4	0.865	INTERGENIC
3L	22509158	3L_22509158_SNP [dm3] 3L_22516058_SNP [dm6]	T	C	2.222e^-4	0.865	INTERGENIC
2L	11618268	2L_11618268_SNP [dm3] 2L_11618268_SNP [dm6]	C	A	2.222e^-4	0.865	INTRON kek2
3R	20572416	3R_20572416_SNP [dm3] 3R_24746694_SNP [dm6]	A	C	2.229e^-4	0.865	INTRON tok	TF binding site mE1_TFBS_chinmo
3L	1869969	3L_1869969_SNP [dm3] 3L_1869969_SNP [dm6]	A	G	2.231e^-4	0.865	UPSTREAM CG13924 DOWNSTREAM CG12025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8170938	2R_8170938_SNP [dm3] 2R_12283433_SNP [dm6]	A	G	2.233e^-4	0.865	INTRON CG42700
2R	8170940	2R_8170940_SNP [dm3] 2R_12283435_SNP [dm6]	T	G	2.233e^-4	0.865	INTRON CG42700
2R	10053983	2R_10053983_SNP [dm3] 2R_14166478_SNP [dm6]	A	G	2.237e^-4	0.865	SYNONYMOUS_CODING CG8323 UPSTREAM CG18327	TF binding site mE1_TFBS_chinmo
2R	10331497	2R_10331497_SNP [dm3] 2R_14443992_SNP [dm6]	C	G	2.240e^-4	0.865	INTRON Oaz	TF binding site BDTNP1_TFBS_dl
2L	12481554	2L_12481554_SNP [dm3] 2L_12481554_SNP [dm6]	T	A	2.242e^-4	0.865	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	17522582	X_17522582_SNP [dm3] X_17628549_SNP [dm6]	G	A	2.243e^-4	0.865	NON_SYNONYMOUS_CODING CG8326 UPSTREAM stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1911352	2R_1911352_SNP [dm3] 2R_6023847_SNP [dm6]	T	G	2.251e^-4	0.865	UPSTREAM dream INTERGENIC
2R	1927428	2R_1927428_DEL [dm3] 2R_6039923_DEL [dm6]	ACATGC	A	2.251e^-4	0.865	INTRON CG14591	TF binding site BDTNP1_TFBS_dl
3R	5256883	3R_5256883_SNP [dm3] 3R_9431161_SNP [dm6]	G	T	2.252e^-4	0.865	INTRON ps
2L	14445093	2L_14445093_SNP [dm3] 2L_14445093_SNP [dm6]	T	C	2.256e^-4	0.865	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6539726	3R_6539726_INS [dm3] 3R_10714004_INS [dm6]	T	TC	2.261e^-4	0.865	UPSTREAM CG4073 INTERGENIC
2R	8268081	2R_8268081_SNP [dm3] 2R_12380576_SNP [dm6]	T	A	2.264e^-4	0.865	UPSTREAM CG13155 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10374559	3L_10374559_INS [dm3] 3L_10381459_INS [dm6]	A	ATAGA	2.265e^-4	0.865	INTERGENIC
X	18252585	X_18252585_SNP [dm3] X_18358552_SNP [dm6]	C	A	2.265e^-4	0.865	UPSTREAM CG6106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11145535	2R_11145535_SNP [dm3] 2R_15258030_SNP [dm6]	C	A	2.270e^-4	0.865	UTR_3_PRIME scb UPSTREAM ItgalphaPS4
X	7005998	X_7005998_SNP [dm3] X_7111965_SNP [dm6]	A	T	2.283e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6678418	3R_6678418_SNP [dm3] 3R_10852696_SNP [dm6]	G	A	2.286e^-4	0.865	UPSTREAM CG4565 DOWNSTREAM CG42394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	11824315	3R_11824315_SNP [dm3] 3R_15998593_SNP [dm6]	T	A	2.296e^-4	0.865	INTRON srp
2L	16837576	2L_16837576_SNP [dm3] 2L_16837576_SNP [dm6]	C	T	2.296e^-4	0.865	UPSTREAM SclB & 2 others INTERGENIC
2R	2115018	2R_2115018_SNP [dm3] 2R_6227513_SNP [dm6]	T	A	2.297e^-4	0.865	DOWNSTREAM tomboy40 INTRON bin3
2R	8013861	2R_8013861_SNP [dm3] 2R_12126356_SNP [dm6]	T	C	2.302e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	6551232	3L_6551232_SNP [dm3] 3L_6558132_SNP [dm6]	C	T	2.310e^-4	0.865	INTRON CG18769
3R	5251595	3R_5251595_SNP [dm3] 3R_9425873_SNP [dm6]	C	T	2.312e^-4	0.865	INTRON ps
2L	20674966	2L_20674966_SNP [dm3] 2L_20674966_SNP [dm6]	C	T	2.318e^-4	0.865	INTRON CG31678	TF binding site BDTNP1_TFBS_da
3L	15500857	3L_15500857_SNP [dm3] 3L_15507757_SNP [dm6]	T	C	2.335e^-4	0.865	INTRON CG7841	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2839434	3L_2839434_SNP [dm3] 3L_2839434_SNP [dm6]	C	G	2.343e^-4	0.865	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5100952	3R_5100952_SNP [dm3] 3R_9275230_SNP [dm6]	G	A	2.345e^-4	0.865	INTERGENIC
2L	13031117	2L_13031117_SNP [dm3] 2L_13031117_SNP [dm6]	A	G	2.349e^-4	0.865	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	20944479	2L_20944479_SNP [dm3] 2L_20944479_SNP [dm6]	T	C	2.349e^-4	0.865	INTERGENIC
3L	21184940	3L_21184940_SNP [dm3] 3L_21191840_SNP [dm6]	G	T	2.351e^-4	0.865	INTRON CG42337	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	8171025	2R_8171025_SNP [dm3] 2R_12283520_SNP [dm6]	A	G	2.352e^-4	0.865	INTRON CG42700
3L	6280128	3L_6280128_SNP [dm3] 3L_6287028_SNP [dm6]	T	C	2.360e^-4	0.865	INTERGENIC
X	8795160	X_8795160_SNP [dm3] X_8901127_SNP [dm6]	A	G	2.366e^-4	0.865	UPSTREAM CG1885 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6255451	3L_6255451_SNP [dm3] 3L_6262351_SNP [dm6]	G	T	2.370e^-4	0.865	DOWNSTREAM CR44522 INTRON ImpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5449631	3R_5449631_SNP [dm3] 3R_9623909_SNP [dm6]	A	G	2.371e^-4	0.865	SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7603955	X_7603955_SNP [dm3] X_7709922_SNP [dm6]	A	T	2.371e^-4	0.865	UPSTREAM CHES-1-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14057624	X_14057624_SNP [dm3] X_14163591_SNP [dm6]	C	T	2.381e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	25097412	3R_25097412_INS [dm3] 3R_29271690_INS [dm6]	T	TATTCAAGTTAGAATAC...	2.391e^-4	0.865	INTERGENIC	regulatory region REDfly_CRMs
2L	16182883	2L_16182883_SNP [dm3] 2L_16182883_SNP [dm6]	A	C	2.392e^-4	0.865	INTRON Ca-alpha1D
2R	17407938	2R_17407938_SNP [dm3] 2R_21520433_SNP [dm6]	G	A	2.393e^-4	0.865	UTR_3_PRIME CG30289 UPSTREAM CG30288
3R	19899790	3R_19899790_SNP [dm3] 3R_24074068_SNP [dm6]	C	T	2.404e^-4	0.865	INTRON 4EHP
2L	3971320	2L_3971320_SNP [dm3] 2L_3971320_SNP [dm6]	T	G	2.408e^-4	0.865	INTRON fred
3R	17288410	3R_17288410_SNP [dm3] 3R_21462688_SNP [dm6]	A	T	2.413e^-4	0.865	INTERGENIC
2R	12375421	2R_12375421_SNP [dm3] 2R_16487916_SNP [dm6]	C	A	2.417e^-4	0.865	UPSTREAM CG33459 DOWNSTREAM CG33458 INTERGENIC
2R	10221688	2R_10221688_SNP [dm3] 2R_14334183_SNP [dm6]	T	C	2.420e^-4	0.865	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15905459	2R_15905459_SNP [dm3] 2R_20017954_SNP [dm6]	G	A	2.422e^-4	0.865	UPSTREAM CR44630 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5521545	X_5521545_SNP [dm3] X_5627512_SNP [dm6]	G	T	2.443e^-4	0.865	UTR_3_PRIME CG42492 DOWNSTREAM CG42492
3R	20341382	3R_20341382_SNP [dm3] 3R_24515660_SNP [dm6]	C	T	2.443e^-4	0.865	SYNONYMOUS_CODING CG13617 UPSTREAM nAChRbeta2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22497640	3L_22497640_SNP [dm3] 3L_22504540_SNP [dm6]	G	C	2.452e^-4	0.865	UTR_3_PRIME CG43329 UPSTREAM CG43331 & 1 other
2L	10029128	2L_10029128_SNP [dm3] 2L_10029128_SNP [dm6]	C	G	2.454e^-4	0.865	UTR_3_PRIME CG13127
2L	1029785	2L_1029785_SNP [dm3] 2L_1029785_SNP [dm6]	A	G	2.456e^-4	0.865	INTRON IA-2
3L	6253051	3L_6253051_SNP [dm3] 3L_6259951_SNP [dm6]	C	T	2.456e^-4	0.865	INTRON ImpL3
2L	1216515	2L_1216515_SNP [dm3] 2L_1216515_SNP [dm6]	T	C	2.461e^-4	0.865	DOWNSTREAM CR43263 INTERGENIC
3R	23822829	3R_23822829_DEL [dm3] 3R_27997107_DEL [dm6]	TCCC	T	2.462e^-4	0.865	INTERGENIC
2R	14035967	2R_14035967_SNP [dm3] 2R_18148462_SNP [dm6]	T	A	2.469e^-4	0.865	UTR_3_PRIME CG5742 UPSTREAM CG17680 DOWNSTREAM CG5742	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18803932	2L_18803932_SNP [dm3] 2L_18803932_SNP [dm6]	A	C	2.470e^-4	0.865	DOWNSTREAM CG43814 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	18809989	2L_18809989_SNP [dm3] 2L_18809989_SNP [dm6]	T	G	2.472e^-4	0.865	UTR_3_PRIME CG10570 & 1 other DOWNSTREAM CG10570 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17771990	2R_17771990_SNP [dm3] 2R_21884485_SNP [dm6]	T	C	2.474e^-4	0.865	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7901420	2L_7901420_DEL [dm3] 2L_7901420_DEL [dm6]	ATA	A	2.475e^-4	0.865	INTRON Snoo
2R	12144542	2R_12144542_SNP [dm3] 2R_16257037_SNP [dm6]	T	C	2.477e^-4	0.865	INTRON CngA
X	8922365	X_8922365_INS [dm3] X_9028332_INS [dm6]	A	ACA	2.486e^-4	0.866	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2L	7035569	2L_7035569_SNP [dm3] 2L_7035569_SNP [dm6]	T	C	2.491e^-4	0.866	SPLICE_SITE_REGION CG11266 INTRON CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	11634063	2L_11634063_SNP [dm3] 2L_11634063_SNP [dm6]	G	C	2.493e^-4	0.866	INTERGENIC
2L	585853	2L_585853_SNP [dm3] 2L_585853_SNP [dm6]	T	C	2.504e^-4	0.868	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	10965381	3L_10965381_SNP [dm3] 3L_10972281_SNP [dm6]	C	T	2.509e^-4	0.868	UPSTREAM CG14147 INTERGENIC
3R	10631375	3R_10631375_SNP [dm3] 3R_14805653_SNP [dm6]	T	G	2.523e^-4	0.87	UTR_3_PRIME btsz DOWNSTREAM btsz
2L	2553493	2L_2553493_SNP [dm3] 2L_2553493_SNP [dm6]	T	A	2.537e^-4	0.87	UPSTREAM CG3515 INTERGENIC
3R	26964605	3R_26964605_SNP [dm3] 3R_31138883_SNP [dm6]	T	C	2.540e^-4	0.87	INTRON Gycbeta100B
2L	20938639	2L_20938639_SNP [dm3] 2L_20938639_SNP [dm6]	G	T	2.548e^-4	0.87	INTERGENIC
3R	26964704	3R_26964704_SNP [dm3] 3R_31138982_SNP [dm6]	T	C	2.553e^-4	0.87	INTRON Gycbeta100B
2R	1908568	2R_1908568_SNP [dm3] 2R_6021063_SNP [dm6]	A	G	2.558e^-4	0.87	UTR_3_PRIME dream DOWNSTREAM Pngl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	10491497	3L_10491497_SNP [dm3] 3L_10498397_SNP [dm6]	G	C	2.570e^-4	0.87	INTRON A2bp1
2L	9915707	2L_9915707_SNP [dm3] 2L_9915707_SNP [dm6]	A	G	2.576e^-4	0.87	SYNONYMOUS_CODING yip2 DOWNSTREAM Srp54
X	21188776	X_21188776_SNP [dm3] X_21317749_SNP [dm6]	C	T	2.583e^-4	0.87	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
2R	9370791	2R_9370791_SNP [dm3] 2R_13483286_SNP [dm6]	G	C	2.584e^-4	0.87	UPSTREAM arr DOWNSTREAM cbc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2599216	2L_2599216_SNP [dm3] 2L_2599216_SNP [dm6]	G	C	2.589e^-4	0.87	INTRON CR44790
3R	22051180	3R_22051180_SNP [dm3] 3R_26225458_SNP [dm6]	G	A	2.594e^-4	0.87	INTERGENIC
3L	11531727	3L_11531727_SNP [dm3] 3L_11538627_SNP [dm6]	T	A	2.605e^-4	0.87	INTRON Mob2
2L	3971854	2L_3971854_SNP [dm3] 2L_3971854_SNP [dm6]	C	T	2.610e^-4	0.87	INTRON fred
3L	10640278	3L_10640278_SNP [dm3] 3L_10647178_SNP [dm6]	G	A	2.611e^-4	0.87	INTRON CG32066
2L	16837586	2L_16837586_SNP [dm3] 2L_16837586_SNP [dm6]	C	T	2.618e^-4	0.87	UPSTREAM SclB & 2 others INTERGENIC
3R	14059321	3R_14059321_SNP [dm3] 3R_18233599_SNP [dm6]	G	A	2.621e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs
X	21184678	X_21184678_SNP [dm3] X_21313651_SNP [dm6]	C	A	2.623e^-4	0.87	SYNONYMOUS_CODING CG1801
X	17538614	X_17538614_DEL [dm3] X_17644581_DEL [dm6]	AA	A	2.630e^-4	0.87	INTRON RhoGAPp190
2L	8796816	2L_8796816_SNP [dm3] 2L_8796816_SNP [dm6]	A	T	2.632e^-4	0.87	INTERGENIC	TF binding site mE1_TFBS_sens
2L	3689741	2L_3689741_SNP [dm3] 2L_3689741_SNP [dm6]	C	G	2.634e^-4	0.87	INTRON CG34340
2L	1032886	2L_1032886_SNP [dm3] 2L_1032886_SNP [dm6]	T	C	2.639e^-4	0.87	INTRON IA-2
3L	22118218	3L_22118218_SNP [dm3] 3L_22125118_SNP [dm6]	G	A	2.643e^-4	0.87	INTERGENIC
3L	22118221	3L_22118221_SNP [dm3] 3L_22125121_SNP [dm6]	A	T	2.643e^-4	0.87	INTERGENIC
3L	22118227	3L_22118227_SNP [dm3] 3L_22125127_SNP [dm6]	T	G	2.644e^-4	0.87	INTERGENIC
3R	22616429	3R_22616429_SNP [dm3] 3R_26790707_SNP [dm6]	A	G	2.646e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	7860682	X_7860682_SNP [dm3] X_7966649_SNP [dm6]	A	G	2.655e^-4	0.87	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6678300	3R_6678300_SNP [dm3] 3R_10852578_SNP [dm6]	G	A	2.658e^-4	0.87	UPSTREAM CG4565 DOWNSTREAM CG42394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10828956	2R_10828956_SNP [dm3] 2R_14941451_SNP [dm6]	A	G	2.663e^-4	0.87	UPSTREAM CG10257 DOWNSTREAM Lap1 INTERGENIC
2L	2553399	2L_2553399_SNP [dm3] 2L_2553399_SNP [dm6]	G	A	2.667e^-4	0.87	UPSTREAM CG3515 INTERGENIC
3R	6680168	3R_6680168_SNP [dm3] 3R_10854446_SNP [dm6]	G	A	2.670e^-4	0.87	UTR_5_PRIME CG6567 UPSTREAM CG4511 DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	10222688	3L_10222688_SNP [dm3] 3L_10229588_SNP [dm6]	C	T	2.683e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16580525	X_16580525_SNP [dm3] X_16686492_SNP [dm6]	C	T	2.689e^-4	0.87	SYNONYMOUS_CODING Sep4
2L	14794243	2L_14794243_SNP [dm3] 2L_14794243_SNP [dm6]	A	G	2.692e^-4	0.87	DOWNSTREAM CG18420 INTERGENIC
2R	10469646	2R_10469646_SNP [dm3] 2R_14582141_SNP [dm6]	G	A	2.692e^-4	0.87	INTRON ttv
3R	17151176	3R_17151176_SNP [dm3] 3R_21325454_SNP [dm6]	T	A	2.707e^-4	0.87	INTRON CG16791
3L	12042837	3L_12042837_SNP [dm3] 3L_12049737_SNP [dm6]	C	T	2.710e^-4	0.87	INTRON rols
2L	16182871	2L_16182871_SNP [dm3] 2L_16182871_SNP [dm6]	T	A	2.717e^-4	0.87	INTRON Ca-alpha1D
3L	14618631	3L_14618631_SNP [dm3] 3L_14625531_SNP [dm6]	T	A	2.718e^-4	0.87	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14134330	3R_14134330_SNP [dm3] 3R_18308608_SNP [dm6]	T	A	2.720e^-4	0.87	INTRON PKD
2R	9790688	2R_9790688_SNP [dm3] 2R_13903183_SNP [dm6]	T	C	2.733e^-4	0.87	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	22116330	3R_22116330_SNP [dm3] 3R_26290608_SNP [dm6]	C	T	2.733e^-4	0.87	INTERGENIC
X	6387032	X_6387032_SNP [dm3] X_6492999_SNP [dm6]	C	T	2.735e^-4	0.87	INTRON CG42340
2R	9626581	2R_9626581_SNP [dm3] 2R_13739076_SNP [dm6]	A	T	2.737e^-4	0.87	INTRON fas
2R	11145534	2R_11145534_SNP [dm3] 2R_15258029_SNP [dm6]	C	A	2.737e^-4	0.87	UTR_3_PRIME scb UPSTREAM ItgalphaPS4
3R	14555312	3R_14555312_SNP [dm3] 3R_18729590_SNP [dm6]	T	A	2.738e^-4	0.87	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7381549	3R_7381549_SNP [dm3] 3R_11555827_SNP [dm6]	C	A	2.740e^-4	0.87	DOWNSTREAM CG14708 INTERGENIC
2L	9054176	2L_9054176_SNP [dm3] 2L_9054176_SNP [dm6]	G	C	2.745e^-4	0.87	INTRON CG31708
3L	7721972	3L_7721972_SNP [dm3] 3L_7728872_SNP [dm6]	C	G	2.749e^-4	0.87	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9410825	2R_9410825_SNP [dm3] 2R_13523320_SNP [dm6]	A	G	2.755e^-4	0.87	UTR_3_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
X	7005931	X_7005931_SNP [dm3] X_7111898_SNP [dm6]	T	A	2.759e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25097314	3R_25097314_SNP [dm3] 3R_29271592_SNP [dm6]	A	T	2.765e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs
2L	8253632	2L_8253632_SNP [dm3] 2L_8253632_SNP [dm6]	T	G	2.766e^-4	0.87	UPSTREAM CG8086 INTRON CG8086
2L	9834173	2L_9834173_SNP [dm3] 2L_9834173_SNP [dm6]	A	G	2.767e^-4	0.87	INTRON nAChRalpha6
2L	13089238	2L_13089238_SNP [dm3] 2L_13089238_SNP [dm6]	C	A	2.769e^-4	0.87	UPSTREAM CR44197 INTERGENIC
3L	22315093	3L_22315093_SNP [dm3] 3L_22321993_SNP [dm6]	T	C	2.804e^-4	0.872	INTRON Ten-m
2R	17549699	2R_17549699_SNP [dm3] 2R_21662194_SNP [dm6]	G	A	2.813e^-4	0.872	UTR_5_PRIME pirk UPSTREAM CR44748
3L	13831415	3L_13831415_SNP [dm3] 3L_13838315_SNP [dm6]	G	A	2.814e^-4	0.872	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8247042	2R_8247042_SNP [dm3] 2R_12359537_SNP [dm6]	T	C	2.814e^-4	0.872	DOWNSTREAM CG30049 INTRON CG30043	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2097768	2R_2097768_DEL [dm3] 2R_6210263_DEL [dm6]	CTGAGCATAC	C	2.817e^-4	0.872	UPSTREAM CG17994 INTRON l_2_k14710
X	7006030	X_7006030_SNP [dm3] X_7111997_SNP [dm6]	G	A	2.824e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8709857	X_8709857_INS [dm3] X_8815824_INS [dm6]	T	TA	2.826e^-4	0.872	INTERGENIC
3L	22556620	3L_22556620_SNP [dm3] 3L_22563520_SNP [dm6]	G	C	2.835e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12921894	3R_12921894_SNP [dm3] 3R_17096172_SNP [dm6]	A	C	2.838e^-4	0.872	UPSTREAM cher INTRON cher
2L	8468443	2L_8468443_SNP [dm3] 2L_8468443_SNP [dm6]	G	A	2.840e^-4	0.872	INTRON d
X	4979569	X_4979569_DEL [dm3] X_5085536_DEL [dm6]	ATAAAAAGT	A	2.848e^-4	0.872	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22496738	3L_22496738_SNP [dm3] 3L_22503638_SNP [dm6]	C	T	2.865e^-4	0.872	NON_SYNONYMOUS_CODING CG43331 DOWNSTREAM CG43330 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	3970418	2L_3970418_SNP [dm3] 2L_3970418_SNP [dm6]	T	C	2.867e^-4	0.872	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	5304065	3R_5304065_SNP [dm3] 3R_9478343_SNP [dm6]	G	A	2.874e^-4	0.872	INTRON CG16779
X	17522231	X_17522231_SNP [dm3] X_17628198_SNP [dm6]	G	A	2.876e^-4	0.872	UTR_3_PRIME CG8326 UPSTREAM stas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24153907	3R_24153907_SNP [dm3] 3R_28328185_SNP [dm6]	C	G	2.879e^-4	0.872	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9725234	3L_9725234_SNP [dm3] 3L_9732134_SNP [dm6]	A	G	2.887e^-4	0.872	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9630063	2L_9630063_SNP [dm3] 2L_9630063_SNP [dm6]	G	C	2.889e^-4	0.872	INTERGENIC
X	7006037	X_7006037_SNP [dm3] X_7112004_SNP [dm6]	T	C	2.891e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11604898	2L_11604898_SNP [dm3] 2L_11604898_SNP [dm6]	A	G	2.892e^-4	0.872	INTRON kek2
X	19737673	X_19737673_SNP [dm3] X_19843640_SNP [dm6]	A	G	2.894e^-4	0.872	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	17737773	X_17737773_SNP [dm3] X_17843740_SNP [dm6]	A	G	2.899e^-4	0.872	SYNONYMOUS_CODING CG8142 DOWNSTREAM e_y_1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19358722	3R_19358722_SNP [dm3] 3R_23533000_SNP [dm6]	C	T	2.903e^-4	0.872	UTR_3_PRIME CG10170
2L	8253146	2L_8253146_SNP [dm3] 2L_8253146_SNP [dm6]	C	T	2.906e^-4	0.872	UPSTREAM CG8086 INTRON CG8086
2L	2704845	2L_2704845_SNP [dm3] 2L_2704845_SNP [dm6]	A	T	2.909e^-4	0.872	INTRON CG31690	TF binding site BDTNP1_TFBS_twi
2L	1103836	2L_1103836_SNP [dm3] 2L_1103836_SNP [dm6]	G	T	2.909e^-4	0.872	INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11618646	2L_11618646_SNP [dm3] 2L_11618646_SNP [dm6]	T	A	2.910e^-4	0.872	INTRON kek2
2R	14399008	2R_14399008_SNP [dm3] 2R_18511503_SNP [dm6]	C	G	2.911e^-4	0.872	INTERGENIC
X	5905196	X_5905196_SNP [dm3] X_6011163_SNP [dm6]	C	A	2.919e^-4	0.872	INTRON mab-21	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20572519	3R_20572519_SNP [dm3] 3R_24746797_SNP [dm6]	C	T	2.921e^-4	0.872	INTRON tok	TF binding site mE1_TFBS_chinmo
3R	10549314	3R_10549314_SNP [dm3] 3R_14723592_SNP [dm6]	C	T	2.921e^-4	0.872	UTR_5_PRIME kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1776751	3L_1776751_SNP [dm3] 3L_1776751_SNP [dm6]	G	C	2.923e^-4	0.872	SYNONYMOUS_CODING CG12018 UPSTREAM mRpL46 DOWNSTREAM CG2021	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12354637	X_12354637_SNP [dm3] X_12460604_SNP [dm6]	G	T	2.937e^-4	0.873	INTRON Rab40
3L	12893656	3L_12893656_SNP [dm3] 3L_12900556_SNP [dm6]	C	T	2.947e^-4	0.873	DOWNSTREAM CG12520 INTERGENIC
X	17612467	X_17612467_SNP [dm3] X_17718434_SNP [dm6]	T	C	2.955e^-4	0.873	INTRON CG42684	TF binding site mE1_TFBS_zfh1
2R	13853741	2R_13853741_SNP [dm3] 2R_17966236_SNP [dm6]	T	G	2.956e^-4	0.873	INTERGENIC
3R	17786735	3R_17786735_SNP [dm3] 3R_21961013_SNP [dm6]	G	T	2.958e^-4	0.873	INTRON Eip93F
2R	17772105	2R_17772105_SNP [dm3] 2R_21884600_SNP [dm6]	C	T	2.959e^-4	0.873	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20746782	3R_20746782_SNP [dm3] 3R_24921060_SNP [dm6]	T	C	2.961e^-4	0.873	SYNONYMOUS_CODING CG11168 UTR_3_PRIME CG11168	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13802277	3R_13802277_SNP [dm3] 3R_17976555_SNP [dm6]	A	C	2.967e^-4	0.873	INTRON cpo
2L	11634797	2L_11634797_SNP [dm3] 2L_11634797_SNP [dm6]	A	G	2.978e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_inv
3R	17288336	3R_17288336_SNP [dm3] 3R_21462614_SNP [dm6]	T	A	2.986e^-4	0.875	INTERGENIC
3L	10491483	3L_10491483_SNP [dm3] 3L_10498383_SNP [dm6]	G	A	2.990e^-4	0.875	INTRON A2bp1
3L	10222826	3L_10222826_SNP [dm3] 3L_10229726_SNP [dm6]	A	G	2.990e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3971851	2L_3971851_SNP [dm3] 2L_3971851_SNP [dm6]	A	T	3.006e^-4	0.877	INTRON fred
2R	11665978	2R_11665978_SNP [dm3] 2R_15778473_SNP [dm6]	G	A	3.009e^-4	0.877	SYNONYMOUS_CODING Zasp52
3L	7613878	3L_7613878_SNP [dm3] 3L_7620778_SNP [dm6]	A	T	3.011e^-4	0.877	INTRON CG33275
2R	8244486	2R_8244486_SNP [dm3] 2R_12356981_SNP [dm6]	G	A	3.015e^-4	0.877	NON_SYNONYMOUS_CODING CG30049
2R	10036591	2R_10036591_SNP [dm3] 2R_14149086_SNP [dm6]	C	T	3.020e^-4	0.877	NON_SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22114675	3L_22114675_SNP [dm3] 3L_22121575_SNP [dm6]	T	C	3.031e^-4	0.879	UPSTREAM CR45236 INTERGENIC
3L	22114677	3L_22114677_SNP [dm3] 3L_22121577_SNP [dm6]	A	C	3.052e^-4	0.881	UPSTREAM CR45236 INTERGENIC
3L	22120827	3L_22120827_SNP [dm3] 3L_22127727_SNP [dm6]	A	T	3.052e^-4	0.881	INTERGENIC
X	8006667	X_8006667_DEL [dm3] X_8112634_DEL [dm6]	CACAAG	C	3.064e^-4	0.881	INTRON Gclc
2L	12487538	2L_12487538_SNP [dm3] 2L_12487538_SNP [dm6]	G	T	3.067e^-4	0.881	INTRON bun
2R	16187821	2R_16187821_SNP [dm3] 2R_20300316_SNP [dm6]	G	C	3.071e^-4	0.881	INTERGENIC
3L	22497634	3L_22497634_SNP [dm3] 3L_22504534_SNP [dm6]	A	G	3.073e^-4	0.881	UTR_3_PRIME CG43329 UPSTREAM CG43331 & 1 other
3R	7381532	3R_7381532_SNP [dm3] 3R_11555810_SNP [dm6]	A	G	3.077e^-4	0.881	DOWNSTREAM CG14708 INTERGENIC
3L	5790363	3L_5790363_SNP [dm3] 3L_5797263_SNP [dm6]	A	C	3.081e^-4	0.881	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	7604595	X_7604595_SNP [dm3] X_7710562_SNP [dm6]	C	T	3.083e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	5521614	X_5521614_INS [dm3] X_5627581_INS [dm6]	T	TT	3.087e^-4	0.881	UTR_3_PRIME CG42492 DOWNSTREAM CG42492
X	5296362	X_5296362_SNP [dm3] X_5402329_SNP [dm6]	T	A	3.113e^-4	0.882	UTR_3_PRIME SK INTRON SK
3L	5640730	3L_5640730_SNP [dm3] 3L_5647630_SNP [dm6]	A	T	3.123e^-4	0.882	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22354036	3L_22354036_SNP [dm3] 3L_22360936_SNP [dm6]	T	G	3.129e^-4	0.882	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14751162	2R_14751162_SNP [dm3] 2R_18863657_SNP [dm6]	C	G	3.145e^-4	0.882	UPSTREAM CG43070 DOWNSTREAM CG43069 & 1 other INTERGENIC
3R	21073866	3R_21073866_SNP [dm3] 3R_25248144_SNP [dm6]	A	G	3.154e^-4	0.882	UPSTREAM RpS27 INTRON Nup37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8013854	2R_8013854_SNP [dm3] 2R_12126349_SNP [dm6]	G	A	3.156e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	13831392	3L_13831392_SNP [dm3] 3L_13838292_SNP [dm6]	G	A	3.161e^-4	0.882	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9689633	X_9689633_SNP [dm3] X_9795600_SNP [dm6]	A	G	3.168e^-4	0.882	INTRON CG32698
X	6386917	X_6386917_SNP [dm3] X_6492884_SNP [dm6]	G	A	3.182e^-4	0.882	INTRON CG42340
2R	10249479	2R_10249479_DEL [dm3] 2R_14361974_DEL [dm6]	GGTCTATTTC	T	3.191e^-4	0.882	UTR_5_PRIME Arc2 UPSTREAM CR10102
2L	14795928	2L_14795928_SNP [dm3] 2L_14795928_SNP [dm6]	C	G	3.192e^-4	0.882	SPLICE_SITE_REGION CG18420 INTRON CG18420
2R	1903320	2R_1903320_SNP [dm3] 2R_6015815_SNP [dm6]	A	T	3.196e^-4	0.882	UPSTREAM Act42A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	20676472	2L_20676472_SNP [dm3] 2L_20676472_SNP [dm6]	G	A	3.214e^-4	0.882	SYNONYMOUS_CODING ik2 UPSTREAM CG31678	TF binding site BDTNP1_TFBS_dl
2R	15904965	2R_15904965_SNP [dm3] 2R_20017460_SNP [dm6]	A	C	3.215e^-4	0.882	UPSTREAM CR44630 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	597059	3L_597059_SNP [dm3] 3L_597059_SNP [dm6]	G	A	3.221e^-4	0.882	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14192010	3L_14192010_DEL [dm3] 3L_14198910_DEL [dm6]	CTACC	C	3.229e^-4	0.882	INTRON nuf
3R	13802440	3R_13802440_SNP [dm3] 3R_17976718_SNP [dm6]	A	G	3.242e^-4	0.882	INTRON cpo
3L	16042646	3L_16042646_SNP [dm3] 3L_16049546_SNP [dm6]	G	A	3.242e^-4	0.882	INTRON th & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	21188447	X_21188447_SNP [dm3] X_21317420_SNP [dm6]	G	A	3.245e^-4	0.882	SYNONYMOUS_CODING Rpt6 UTR_5_PRIME CG1801 DOWNSTREAM CG33713 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5309149	2R_5309149_SNP [dm3] 2R_9421644_SNP [dm6]	A	C	3.250e^-4	0.882	DOWNSTREAM CG13955 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9281284	2R_9281284_SNP [dm3] 2R_13393779_SNP [dm6]	T	C	3.251e^-4	0.882	NON_SYNONYMOUS_CODING AttC UPSTREAM CG43691 DOWNSTREAM CG4744
X	16255334	X_16255334_SNP [dm3] X_16361301_SNP [dm6]	T	A	3.253e^-4	0.882	UPSTREAM nonA DOWNSTREAM Gpi1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25290746	3R_25290746_SNP [dm3] 3R_29465024_SNP [dm6]	A	T	3.256e^-4	0.882	INTRON Ptp99A
3R	5248123	3R_5248123_SNP [dm3] 3R_9422401_SNP [dm6]	A	G	3.261e^-4	0.882	INTRON ps	TF binding site BDTNP1_TFBS_dl
2L	7035493	2L_7035493_SNP [dm3] 2L_7035493_SNP [dm6]	C	T	3.263e^-4	0.882	SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	12550827	2R_12550827_SNP [dm3] 2R_16663322_SNP [dm6]	C	T	3.267e^-4	0.882	INTRON Picot
3L	7638753	3L_7638753_SNP [dm3] 3L_7645653_SNP [dm6]	A	G	3.280e^-4	0.882	INTERGENIC
X	21188931	X_21188931_SNP [dm3] X_21317904_SNP [dm6]	T	C	3.281e^-4	0.882	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
X	8815616	X_8815616_SNP [dm3] X_8921583_SNP [dm6]	A	G	3.281e^-4	0.882	INTRON rdgA
3R	5313819	3R_5313819_SNP [dm3] 3R_9488097_SNP [dm6]	A	T	3.287e^-4	0.882	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
3R	6680226	3R_6680226_SNP [dm3] 3R_10854504_SNP [dm6]	T	C	3.289e^-4	0.882	UTR_5_PRIME CG4511 UPSTREAM CG4511 & 1 other DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15769864	2L_15769864_SNP [dm3] 2L_15769864_SNP [dm6]	C	T	3.292e^-4	0.882	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA
2R	5299345	2R_5299345_SNP [dm3] 2R_9411840_SNP [dm6]	A	C	3.293e^-4	0.882	INTRON wun
2L	11601071	2L_11601071_SNP [dm3] 2L_11601071_SNP [dm6]	T	A	3.294e^-4	0.882	INTRON kek2
2L	14794130	2L_14794130_SNP [dm3] 2L_14794130_SNP [dm6]	G	A	3.311e^-4	0.882	DOWNSTREAM CG18420 INTERGENIC
3R	22039853	3R_22039853_SNP [dm3] 3R_26214131_SNP [dm6]	T	C	3.312e^-4	0.882	INTERGENIC
3L	10806347	3L_10806347_SNP [dm3] 3L_10813247_SNP [dm6]	T	C	3.321e^-4	0.882	INTERGENIC
3L	843514	3L_843514_SNP [dm3] 3L_843514_SNP [dm6]	G	C	3.331e^-4	0.882	UTR_3_PRIME Gr61a UPSTREAM CG13889 DOWNSTREAM Gr61a
2R	11533926	2R_11533926_SNP [dm3] 2R_15646421_SNP [dm6]	G	A	3.333e^-4	0.882	INTRON CG42524
3L	6782504	3L_6782504_SNP [dm3] 3L_6789404_SNP [dm6]	C	T	3.344e^-4	0.882	UPSTREAM vvl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9953328	3L_9953328_SNP [dm3] 3L_9960228_SNP [dm6]	A	G	3.346e^-4	0.882	INTRON CG34356
X	8006680	X_8006680_DEL [dm3] X_8112647_DEL [dm6]	ATAC	T	3.350e^-4	0.882	INTRON Gclc
3L	1936961	3L_1936961_SNP [dm3] 3L_1936961_SNP [dm6]	T	C	3.359e^-4	0.882	INTRON CG5687
2L	8256118	2L_8256118_INS [dm3] 2L_8256118_INS [dm6]	A	AGTG	3.360e^-4	0.882	INTRON CG8086
2L	6770728	2L_6770728_SNP [dm3] 2L_6770728_SNP [dm6]	T	C	3.368e^-4	0.882	INTRON CG11321
3R	24901207	3R_24901207_SNP [dm3] 3R_29075485_SNP [dm6]	G	C	3.373e^-4	0.882	INTRON CG11873	TF binding site BDTNP1_TFBS_dl
2R	17127034	2R_17127034_SNP [dm3] 2R_21239529_SNP [dm6]	A	T	3.381e^-4	0.882	INTRON ASPP
2L	7851598	2L_7851598_SNP [dm3] 2L_7851598_SNP [dm6]	C	G	3.388e^-4	0.882	NON_SYNONYMOUS_CODING CG14535
2R	12375431	2R_12375431_SNP [dm3] 2R_16487926_SNP [dm6]	A	G	3.389e^-4	0.882	UPSTREAM CG33459 DOWNSTREAM CG33458 INTERGENIC
X	21188015	X_21188015_SNP [dm3] X_21316988_SNP [dm6]	C	A	3.404e^-4	0.882	SYNONYMOUS_CODING Rpt6 DOWNSTREAM CG33713 & 1 other INTRON CG1801	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5247741	3R_5247741_SNP [dm3] 3R_9422019_SNP [dm6]	C	T	3.405e^-4	0.882	INTRON ps
2R	20339432	2R_20339432_SNP [dm3] 2R_24451909_SNP [dm6]	C	A	3.426e^-4	0.882	SYNONYMOUS_CODING CG4563	TF binding site mE1_TFBS_chinmo
X	14442539	X_14442539_SNP [dm3] X_14548506_SNP [dm6]	C	T	3.428e^-4	0.882	INTERGENIC
3L	2196312	3L_2196312_DEL [dm3] 3L_2196312_DEL [dm6]	CCAG	C	3.446e^-4	0.882	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8256159	2L_8256159_DEL [dm3] 2L_8256159_DEL [dm6]	AGAGCTGGTAAA...	A	3.450e^-4	0.882	INTRON CG8086
2L	20944496	2L_20944496_SNP [dm3] 2L_20944496_SNP [dm6]	T	C	3.459e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7902318	2L_7902318_SNP [dm3] 2L_7902318_SNP [dm6]	A	T	3.466e^-4	0.882	INTRON Snoo
3R	18566970	3R_18566970_SNP [dm3] 3R_22741248_SNP [dm6]	A	T	3.468e^-4	0.882	UTR_5_PRIME CG6985 UPSTREAM Dcr-1	TF binding site mE1_TFBS_cad
3L	9249676	3L_9249676_SNP [dm3] 3L_9256576_SNP [dm6]	T	C	3.481e^-4	0.882	INTRON GluRIB
3R	6671035	3R_6671035_SNP [dm3] 3R_10845313_SNP [dm6]	T	G	3.489e^-4	0.882	INTRON Cad86C
3L	20786656	3L_20786656_SNP [dm3] 3L_20793556_SNP [dm6]	C	T	3.489e^-4	0.882	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14191944	3L_14191944_SNP [dm3] 3L_14198844_SNP [dm6]	T	G	3.497e^-4	0.882	INTRON nuf
2L	8254728	2L_8254728_SNP [dm3] 2L_8254728_SNP [dm6]	A	T	3.515e^-4	0.882	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2R	2115048	2R_2115048_SNP [dm3] 2R_6227543_SNP [dm6]	G	A	3.516e^-4	0.882	DOWNSTREAM tomboy40 INTRON bin3
2L	4677230	2L_4677230_INS [dm3] 2L_4677230_INS [dm6]	G	AATA	3.520e^-4	0.882	INTERGENIC
2L	4677233	2L_4677233_DEL [dm3] 2L_4677233_DEL [dm6]	GC	G	3.520e^-4	0.882	INTERGENIC
2L	11590583	2L_11590583_SNP [dm3] 2L_11590583_SNP [dm6]	G	A	3.523e^-4	0.882	DOWNSTREAM Acp33A INTRON kek2
3L	15501597	3L_15501597_SNP [dm3] 3L_15508497_SNP [dm6]	A	G	3.528e^-4	0.882	UPSTREAM Z600 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22166117	3L_22166117_SNP [dm3] 3L_22173017_SNP [dm6]	A	T	3.533e^-4	0.882	INTRON olf413
3L	13831372	3L_13831372_SNP [dm3] 3L_13838272_SNP [dm6]	T	G	3.536e^-4	0.882	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18834039	X_18834039_SNP [dm3] X_18940006_SNP [dm6]	A	C	3.538e^-4	0.882	INTRON CG43759	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	19676799	3L_19676799_SNP [dm3] 3L_19683699_SNP [dm6]	A	T	3.549e^-4	0.882	DOWNSTREAM CG8765 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13178740	3R_13178740_SNP [dm3] 3R_17353018_SNP [dm6]	T	A	3.556e^-4	0.882	INTRON beat-IIa
X	4979347	X_4979347_SNP [dm3] X_5085314_SNP [dm6]	G	A	3.558e^-4	0.882	UPSTREAM rg & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10819518	2R_10819518_SNP [dm3] 2R_14932013_SNP [dm6]	C	T	3.559e^-4	0.882	SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_sens
3R	7379908	3R_7379908_SNP [dm3] 3R_11554186_SNP [dm6]	A	T	3.563e^-4	0.882	UTR_5_PRIME CG14708
3R	22049465	3R_22049465_SNP [dm3] 3R_26223743_SNP [dm6]	A	G	3.575e^-4	0.882	INTERGENIC
2L	16541823	2L_16541823_INS [dm3] 2L_16541823_INS [dm6]	A	AA	3.577e^-4	0.882	UPSTREAM CG31816 INTERGENIC
2L	13089211	2L_13089211_SNP [dm3] 2L_13089211_SNP [dm6]	G	A	3.581e^-4	0.882	UPSTREAM CR44197 INTERGENIC
2R	7547184	2R_7547184_SNP [dm3] 2R_11659679_SNP [dm6]	T	C	3.582e^-4	0.882	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23891253	3R_23891253_SNP [dm3] 3R_28065531_SNP [dm6]	C	T	3.585e^-4	0.882	INTRON CG34362
2R	5334345	2R_5334345_SNP [dm3] 2R_9446840_SNP [dm6]	A	G	3.587e^-4	0.882	INTRON Camta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1927386	2R_1927386_SNP [dm3] 2R_6039881_SNP [dm6]	C	T	3.589e^-4	0.882	INTRON CG14591	TF binding site BDTNP1_TFBS_dl
2L	10029144	2L_10029144_INS [dm3] 2L_10029144_INS [dm6]	C	CGT	3.595e^-4	0.882	UTR_3_PRIME CG13127
X	12386465	X_12386465_SNP [dm3] X_12492432_SNP [dm6]	C	T	3.598e^-4	0.882	SYNONYMOUS_CODING Lsp1alpha	TF binding site mE1_TFBS_sens
3L	9247675	3L_9247675_SNP [dm3] 3L_9254575_SNP [dm6]	T	C	3.605e^-4	0.882	INTRON GluRIB
2R	10022432	2R_10022432_SNP [dm3] 2R_14134927_SNP [dm6]	G	A	3.615e^-4	0.882	INTRON Prosap
2L	9055625	2L_9055625_SNP [dm3] 2L_9055625_SNP [dm6]	T	C	3.616e^-4	0.882	INTRON CG31708
3R	15003706	3R_15003706_SNP [dm3] 3R_19177984_SNP [dm6]	G	A	3.618e^-4	0.882	UTR_3_PRIME CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad
X	4597656	X_4597656_SNP [dm3] X_4703623_SNP [dm6]	C	T	3.620e^-4	0.882	SYNONYMOUS_CODING l_1_G0334 UTR_5_PRIME l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	2488610	X_2488610_SNP [dm3] X_2594577_SNP [dm6]	G	C	3.623e^-4	0.882	INTRON egh
2R	11675940	2R_11675940_SNP [dm3] 2R_15788435_SNP [dm6]	G	C	3.627e^-4	0.882	INTRON Zasp52
2L	5023301	2L_5023301_SNP [dm3] 2L_5023301_SNP [dm6]	G	A	3.634e^-4	0.882	INTRON vkg
2R	20345055	2R_20345055_SNP [dm3] 2R_24457532_SNP [dm6]	G	A	3.635e^-4	0.882	INTRON CG13579
3L	5640724	3L_5640724_SNP [dm3] 3L_5647624_SNP [dm6]	G	C	3.636e^-4	0.882	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12347413	2R_12347413_SNP [dm3] 2R_16459908_SNP [dm6]	A	G	3.639e^-4	0.882	INTERGENIC
3L	11910565	3L_11910565_SNP [dm3] 3L_11917465_SNP [dm6]	T	A	3.640e^-4	0.882	INTRON CG44837	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3921932	X_3921932_SNP [dm3] X_4027899_SNP [dm6]	G	T	3.645e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8225110	2L_8225110_SNP [dm3] 2L_8225110_SNP [dm6]	C	T	3.654e^-4	0.882	SYNONYMOUS_CODING Pvr
2R	17947577	2R_17947577_SNP [dm3] 2R_22060072_SNP [dm6]	T	C	3.656e^-4	0.882	UPSTREAM Snp INTRON CG13501
3L	6254144	3L_6254144_SNP [dm3] 3L_6261044_SNP [dm6]	C	A	3.661e^-4	0.882	UPSTREAM ImpL3 INTRON ImpL3
2R	4777932	2R_4777932_SNP [dm3] 2R_8890427_SNP [dm6]	A	G	3.664e^-4	0.882	NON_SYNONYMOUS_CODING CG8272	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_sens
3R	5449864	3R_5449864_SNP [dm3] 3R_9624142_SNP [dm6]	T	A	3.664e^-4	0.882	NON_SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6060716	2R_6060716_SNP [dm3] 2R_10173211_SNP [dm6]	A	G	3.666e^-4	0.882	INTRON KCNQ
3R	21097440	3R_21097440_SNP [dm3] 3R_25271718_SNP [dm6]	T	A	3.682e^-4	0.882	UTR_5_PRIME CG11891 UTR_3_PRIME CG11889 UPSTREAM CG11891 DOWNSTREAM CG11889
2L	6774919	2L_6774919_SNP [dm3] 2L_6774919_SNP [dm6]	C	T	3.685e^-4	0.882	UPSTREAM CG17378 INTRON CG17378
3R	14821185	3R_14821185_DEL [dm3] 3R_18995463_DEL [dm6]	TAT	T	3.687e^-4	0.882	INTRON gukh	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17538432	X_17538432_SNP [dm3] X_17644399_SNP [dm6]	G	A	3.699e^-4	0.882	INTRON RhoGAPp190
X	17832778	X_17832778_SNP [dm3] X_17938745_SNP [dm6]	C	T	3.705e^-4	0.882	INTRON Sh
3L	10093553	3L_10093553_SNP [dm3] 3L_10100453_SNP [dm6]	G	C	3.709e^-4	0.882	NON_SYNONYMOUS_CODING CG42826 INTRON dpr6
3L	4827565	3L_4827565_SNP [dm3] 3L_4827565_SNP [dm6]	C	A	3.710e^-4	0.882	NON_SYNONYMOUS_CODING Aats-leu	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	22489596	3L_22489596_SNP [dm3] 3L_22496496_SNP [dm6]	C	T	3.711e^-4	0.882	EXON CR45430
2R	11809104	2R_11809104_SNP [dm3] 2R_15921599_SNP [dm6]	T	A	3.715e^-4	0.882	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14799537	2L_14799537_SNP [dm3] 2L_14799537_SNP [dm6]	C	T	3.721e^-4	0.882	INTERGENIC
2L	8254748	2L_8254748_SNP [dm3] 2L_8254748_SNP [dm6]	T	C	3.732e^-4	0.882	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2R	11740520	2R_11740520_SNP [dm3] 2R_15853015_SNP [dm6]	T	A	3.747e^-4	0.882	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14674632	3R_14674632_SNP [dm3] 3R_18848910_SNP [dm6]	G	A	3.751e^-4	0.882	UTR_5_PRIME CG18208	TF binding site mE1_TFBS_Trl
3L	22648051	3L_22648051_SNP [dm3] 3L_22654951_SNP [dm6]	G	T	3.756e^-4	0.882	INTERGENIC
3R	5304066	3R_5304066_SNP [dm3] 3R_9478344_SNP [dm6]	A	T	3.764e^-4	0.882	INTRON CG16779
2L	4165126	2L_4165126_SNP [dm3] 2L_4165126_SNP [dm6]	T	A	3.779e^-4	0.882	INTRON Or24a
2L	13032076	2L_13032076_SNP [dm3] 2L_13032076_SNP [dm6]	A	T	3.779e^-4	0.882	INTRON CG9932
3L	10222685	3L_10222685_INS [dm3] 3L_10229585_INS [dm6]	T	TTTTTAAAT	3.789e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7561111	2R_7561111_SNP [dm3] 2R_11673606_SNP [dm6]	T	C	3.796e^-4	0.882	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da
2R	8701155	2R_8701155_INS [dm3] 2R_12813650_INS [dm6]	T	TTATTTATTTC...	3.798e^-4	0.882	INTERGENIC
X	8623711	X_8623711_SNP [dm3] X_8729678_SNP [dm6]	A	T	3.799e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22010412	3R_22010412_SNP [dm3] 3R_26184690_SNP [dm6]	C	T	3.805e^-4	0.882	UTR_3_PRIME CG31323 UPSTREAM CG31086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8006666	X_8006666_SNP [dm3] X_8112633_SNP [dm6]	C	T	3.808e^-4	0.882	INTRON Gclc
3R	20516078	3R_20516078_SNP [dm3] 3R_24690356_SNP [dm6]	C	T	3.813e^-4	0.882	INTRON slo
3L	8749993	3L_8749993_SNP [dm3] 3L_8756893_SNP [dm6]	G	A	3.819e^-4	0.882	SYNONYMOUS_CODING CG6576 INTRON Fhos
2R	11239091	2R_11239091_SNP [dm3] 2R_15351586_SNP [dm6]	G	A	3.821e^-4	0.882	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8964813	2R_8964813_SNP [dm3] 2R_13077308_SNP [dm6]	C	T	3.827e^-4	0.882	INTRON Drl-2	TF binding site mE1_TFBS_cad
2L	17469476	2L_17469476_SNP [dm3] 2L_17469476_SNP [dm6]	A	G	3.829e^-4	0.882	INTRON BicD	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	19738764	X_19738764_SNP [dm3] X_19844731_SNP [dm6]	C	G	3.831e^-4	0.882	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6792824	X_6792824_SNP [dm3] X_6898791_SNP [dm6]	G	A	3.838e^-4	0.882	INTERGENIC
2R	17947576	2R_17947576_SNP [dm3] 2R_22060071_SNP [dm6]	A	G	3.839e^-4	0.882	UPSTREAM Snp INTRON CG13501
3R	3445344	3R_3445344_SNP [dm3] 3R_7619622_SNP [dm6]	C	T	3.839e^-4	0.882	INTRON CG34127
2R	6714999	2R_6714999_SNP [dm3] 2R_10827494_SNP [dm6]	G	T	3.852e^-4	0.882	UTR_3_PRIME CG12325 & 1 other
3L	3713873	3L_3713873_SNP [dm3] 3L_3713873_SNP [dm6]	G	A	3.865e^-4	0.882	UPSTREAM CG43089 DOWNSTREAM CG32264 INTERGENIC
2L	7901191	2L_7901191_SNP [dm3] 2L_7901191_SNP [dm6]	C	T	3.866e^-4	0.882	INTRON Snoo
3R	22280799	3R_22280799_DEL [dm3] 3R_26455077_DEL [dm6]	AA	A	3.868e^-4	0.882	UTR_3_PRIME CG43117 DOWNSTREAM Pdf & 1 other
2R	7561427	2R_7561427_SNP [dm3] 2R_11673922_SNP [dm6]	T	C	3.871e^-4	0.882	SYNONYMOUS_CODING Tret1-1 INTRON Roc2
2L	10092620	2L_10092620_SNP [dm3] 2L_10092620_SNP [dm6]	T	A	3.876e^-4	0.882	UPSTREAM CG13133 INTRON CG44153
2R	2053753	2R_2053753_SNP [dm3] 2R_6166248_SNP [dm6]	A	T	3.878e^-4	0.882	DOWNSTREAM tRNA:K2:42Aa & 1 other INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22315705	3L_22315705_SNP [dm3] 3L_22322605_SNP [dm6]	C	G	3.880e^-4	0.882	INTRON Ten-m
X	7005710	X_7005710_SNP [dm3] X_7111677_SNP [dm6]	C	T	3.880e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2553452	2L_2553452_SNP [dm3] 2L_2553452_SNP [dm6]	T	A	3.881e^-4	0.882	UPSTREAM CG3515 INTERGENIC
2L	11618630	2L_11618630_SNP [dm3] 2L_11618630_SNP [dm6]	T	C	3.883e^-4	0.882	INTRON kek2
2L	15615054	2L_15615054_SNP [dm3] 2L_15615054_SNP [dm6]	G	C	3.887e^-4	0.882	UPSTREAM CG15254 DOWNSTREAM CG15253 INTERGENIC
2R	17836063	2R_17836063_SNP [dm3] 2R_21948558_SNP [dm6]	G	C	3.900e^-4	0.882	INTERGENIC
3L	12352092	3L_12352092_SNP [dm3] 3L_12358992_SNP [dm6]	A	C	3.902e^-4	0.882	INTERGENIC
2R	1840348	2R_1840348_SNP [dm3] 2R_5952843_SNP [dm6]	A	T	3.932e^-4	0.882	INTERGENIC
2L	8251543	2L_8251543_SNP [dm3] 2L_8251543_SNP [dm6]	C	T	3.939e^-4	0.882	INTRON CG8086
2L	8253231	2L_8253231_SNP [dm3] 2L_8253231_SNP [dm6]	C	A	3.940e^-4	0.882	UPSTREAM CG8086 INTRON CG8086
3L	22358811	3L_22358811_SNP [dm3] 3L_22365711_SNP [dm6]	C	T	3.947e^-4	0.882	INTRON Ten-m	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3R	5241284	3R_5241284_SNP [dm3] 3R_9415562_SNP [dm6]	G	A	3.950e^-4	0.882	SYNONYMOUS_CODING alpha-Man-II	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15004564	2L_15004564_SNP [dm3] 2L_15004564_SNP [dm6]	G	C	3.961e^-4	0.882	INTERGENIC
3R	20555434	3R_20555434_SNP [dm3] 3R_24729712_SNP [dm6]	T	C	3.961e^-4	0.882	INTRON tok
X	18407755	X_18407755_SNP [dm3] X_18513722_SNP [dm6]	T	C	3.973e^-4	0.882	NON_SYNONYMOUS_CODING CG6470	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19906102	3R_19906102_SNP [dm3] 3R_24080380_SNP [dm6]	T	A	3.974e^-4	0.882	INTRON 4EHP
3L	9624912	3L_9624912_SNP [dm3] 3L_9631812_SNP [dm6]	T	A	3.982e^-4	0.882	DOWNSTREAM fry & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	11601223	2L_11601223_SNP [dm3] 2L_11601223_SNP [dm6]	G	C	3.983e^-4	0.882	INTRON kek2
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	3.987e^-4	0.882	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6750273	2R_6750273_SNP [dm3] 2R_10862768_SNP [dm6]	G	C	3.988e^-4	0.882	INTRON CG30015
2R	8246414	2R_8246414_SNP [dm3] 2R_12358909_SNP [dm6]	T	C	3.990e^-4	0.882	SYNONYMOUS_CODING CG30049 UPSTREAM CG30043	TF binding site mE1_TFBS_cad
2R	11968999	2R_11968999_INS [dm3] 2R_16081494_INS [dm6]	C	CG	3.992e^-4	0.882	UTR_3_PRIME Dg DOWNSTREAM Dg
2L	9835140	2L_9835140_DEL [dm3] 2L_9835140_DEL [dm6]	TT	T	4.006e^-4	0.882	INTRON nAChRalpha6
3L	7733041	3L_7733041_SNP [dm3] 3L_7739941_SNP [dm6]	G	T	4.010e^-4	0.882	INTRON CG32373 & 1 other
3R	18916449	3R_18916449_SNP [dm3] 3R_23090727_SNP [dm6]	C	G	4.016e^-4	0.882	UPSTREAM CG6726 & 1 other INTRON CG13830
2L	1609697	2L_1609697_SNP [dm3] 2L_1609697_SNP [dm6]	A	T	4.022e^-4	0.882	INTRON CG31935	TF binding site mE1_TFBS_cad
2R	10250176	2R_10250176_SNP [dm3] 2R_14362671_SNP [dm6]	C	T	4.022e^-4	0.882	UTR_3_PRIME Arc2 UPSTREAM CR10102 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8170941	2R_8170941_SNP [dm3] 2R_12283436_SNP [dm6]	T	C	4.025e^-4	0.882	INTRON CG42700
2L	13124187	2L_13124187_SNP [dm3] 2L_13124187_SNP [dm6]	A	G	4.031e^-4	0.882	INTERGENIC
3L	12509254	3L_12509254_SNP [dm3] 3L_12516154_SNP [dm6]	A	T	4.033e^-4	0.882	INTRON tral	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	14151763	2R_14151763_INS [dm3] 2R_18264258_INS [dm6]	GT	CGCC	4.039e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24918401	3R_24918401_SNP [dm3] 3R_29092679_SNP [dm6]	C	T	4.049e^-4	0.882	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8242599	2R_8242599_SNP [dm3] 2R_12355094_SNP [dm6]	G	T	4.060e^-4	0.882	UPSTREAM CG30049 INTRON CG30047
2L	7901516	2L_7901516_SNP [dm3] 2L_7901516_SNP [dm6]	C	G	4.067e^-4	0.882	INTRON Snoo
3R	22018888	3R_22018888_SNP [dm3] 3R_26193166_SNP [dm6]	C	G	4.072e^-4	0.882	INTERGENIC
X	11513337	X_11513337_SNP [dm3] X_11619304_SNP [dm6]	A	G	4.072e^-4	0.882	UTR_3_PRIME Met	TF binding site mE1_TFBS_cad
2L	12685678	2L_12685678_SNP [dm3] 2L_12685678_SNP [dm6]	T	C	4.075e^-4	0.882	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15466333	2L_15466333_INS [dm3] 2L_15466333_INS [dm6]	G	GG	4.077e^-4	0.882	INTERGENIC
2R	10989145	2R_10989145_SNP [dm3] 2R_15101640_SNP [dm6]	C	T	4.079e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	14324932	3R_14324932_SNP [dm3] 3R_18499210_SNP [dm6]	G	A	4.080e^-4	0.882	INTRON fru
3L	1776232	3L_1776232_SNP [dm3] 3L_1776232_SNP [dm6]	G	A	4.082e^-4	0.882	SYNONYMOUS_CODING CG12018 DOWNSTREAM CG2021	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	6750265	2R_6750265_SNP [dm3] 2R_10862760_SNP [dm6]	T	C	4.091e^-4	0.882	INTRON CG30015
2L	20845027	2L_20845027_SNP [dm3] 2L_20845027_SNP [dm6]	A	G	4.092e^-4	0.882	INTRON CG31676
3L	7642955	3L_7642955_SNP [dm3] 3L_7649855_SNP [dm6]	C	G	4.103e^-4	0.882	UPSTREAM CG32373 INTERGENIC
2L	11561460	2L_11561460_SNP [dm3] 2L_11561460_SNP [dm6]	T	G	4.106e^-4	0.882	EXON CR44495
2L	2553451	2L_2553451_SNP [dm3] 2L_2553451_SNP [dm6]	G	A	4.119e^-4	0.882	UPSTREAM CG3515 INTERGENIC
X	16655800	X_16655800_SNP [dm3] X_16761767_SNP [dm6]	G	A	4.127e^-4	0.882	INTRON if
3R	16773576	3R_16773576_SNP [dm3] 3R_20947854_SNP [dm6]	G	A	4.136e^-4	0.882	UPSTREAM Atpalpha INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2L	21358712	2L_21358712_SNP [dm3] 2L_21358712_SNP [dm6]	G	A	4.139e^-4	0.882	DOWNSTREAM Tsp39D INTERGENIC
X	2443615	X_2443615_SNP [dm3] X_2549582_SNP [dm6]	C	T	4.157e^-4	0.882	INTERGENIC
2L	9836730	2L_9836730_SNP [dm3] 2L_9836730_SNP [dm6]	A	C	4.161e^-4	0.882	INTRON nAChRalpha6
3R	19358786	3R_19358786_SNP [dm3] 3R_23533064_SNP [dm6]	C	T	4.162e^-4	0.882	NON_SYNONYMOUS_CODING CG10170
2R	2394830	2R_2394830_SNP [dm3] 2R_6507325_SNP [dm6]	G	A	4.184e^-4	0.882	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21069767	3R_21069767_SNP [dm3] 3R_25244045_SNP [dm6]	A	C	4.185e^-4	0.882	DOWNSTREAM CG11854 INTRON bam	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13089157	2L_13089157_SNP [dm3] 2L_13089157_SNP [dm6]	T	A	4.190e^-4	0.882	UPSTREAM CR44197 INTERGENIC
3R	10946136	3R_10946136_SNP [dm3] 3R_15120414_SNP [dm6]	T	G	4.194e^-4	0.882	INTRON CG42788
3L	6254494	3L_6254494_SNP [dm3] 3L_6261394_SNP [dm6]	T	C	4.196e^-4	0.882	UPSTREAM ImpL3 INTRON ImpL3
2L	17590032	2L_17590032_SNP [dm3] 2L_17590032_SNP [dm6]	A	G	4.197e^-4	0.882	START_GAINED Oli UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8256607	2L_8256607_SNP [dm3] 2L_8256607_SNP [dm6]	T	C	4.198e^-4	0.882	INTRON CG8086
3R	5883246	3R_5883246_SNP [dm3] 3R_10057524_SNP [dm6]	A	G	4.200e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3528628	3L_3528628_SNP [dm3] 3L_3528628_SNP [dm6]	A	G	4.213e^-4	0.882	INTRON Eip63E
2L	18934350	2L_18934350_INS [dm3] 2L_18934350_INS [dm6]	T	TG	4.216e^-4	0.882	INTRON ssp3	TF binding site mE1_TFBS_sbb
2R	9790771	2R_9790771_SNP [dm3] 2R_13903266_SNP [dm6]	G	A	4.235e^-4	0.882	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	26350184	3R_26350184_DEL [dm3] 3R_30524462_DEL [dm6]	GT	G	4.243e^-4	0.882	INTRON jdp
X	8006676	X_8006676_SNP [dm3] X_8112643_SNP [dm6]	G	T	4.243e^-4	0.882	INTRON Gclc
2R	11626530	2R_11626530_SNP [dm3] 2R_15739025_SNP [dm6]	C	G	4.246e^-4	0.882	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	6019956	3L_6019956_SNP [dm3] 3L_6026856_SNP [dm6]	A	G	4.249e^-4	0.882	DOWNSTREAM PVRAP INTERGENIC
2L	16198269	2L_16198269_SNP [dm3] 2L_16198269_SNP [dm6]	C	A	4.252e^-4	0.882	INTERGENIC
2L	15948242	2L_15948242_SNP [dm3] 2L_15948242_SNP [dm6]	T	C	4.253e^-4	0.882	INTRON beat-Ib
2L	18824623	2L_18824623_SNP [dm3] 2L_18824623_SNP [dm6]	G	A	4.256e^-4	0.882	INTRON CG17323	TF binding site mE1_TFBS_cad
X	17443380	X_17443380_DEL [dm3] X_17549347_DEL [dm6]	TGCAGCCGGAGCTGGACCAT...	T	4.261e^-4	0.882	INTRON CG43658
3R	17628551	3R_17628551_SNP [dm3] 3R_21802829_SNP [dm6]	G	A	4.263e^-4	0.882	INTRON CASK	TF binding site BDTNP1_TFBS_twi
3R	19692026	3R_19692026_SNP [dm3] 3R_23866304_SNP [dm6]	T	C	4.273e^-4	0.882	INTRON Pli
X	9932495	X_9932495_SNP [dm3] X_10038462_SNP [dm6]	G	A	4.277e^-4	0.882	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_inv
2L	8254892	2L_8254892_SNP [dm3] 2L_8254892_SNP [dm6]	A	C	4.278e^-4	0.882	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2L	8254894	2L_8254894_SNP [dm3] 2L_8254894_SNP [dm6]	A	G	4.278e^-4	0.882	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
X	8922417	X_8922417_SNP [dm3] X_9028384_SNP [dm6]	G	A	4.285e^-4	0.882	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2L	20792805	2L_20792805_SNP [dm3] 2L_20792805_SNP [dm6]	C	T	4.287e^-4	0.882	INTRON vari	TF binding site mE1_TFBS_Trl
3R	19773337	3R_19773337_SNP [dm3] 3R_23947615_SNP [dm6]	C	A	4.290e^-4	0.882	INTRON CG12268
X	10931867	X_10931867_SNP [dm3] X_11037834_SNP [dm6]	T	C	4.290e^-4	0.882	UPSTREAM CG42339 INTRON CG42339
2L	20966392	2L_20966392_SNP [dm3] 2L_20966392_SNP [dm6]	C	A	4.300e^-4	0.882	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
3L	9152249	3L_9152249_SNP [dm3] 3L_9159149_SNP [dm6]	T	A	4.302e^-4	0.882	INTRON Rdl
2R	12769513	2R_12769513_SNP [dm3] 2R_16882008_SNP [dm6]	C	T	4.302e^-4	0.882	INTRON CG8910 & 1 other	TF binding site mE1_TFBS_inv
2L	16198222	2L_16198222_DEL [dm3] 2L_16198222_DEL [dm6]	ACAG	T	4.307e^-4	0.882	INTERGENIC
2R	7547837	2R_7547837_SNP [dm3] 2R_11660332_SNP [dm6]	A	T	4.310e^-4	0.882	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2
3L	22497955	3L_22497955_SNP [dm3] 3L_22504855_SNP [dm6]	G	T	4.315e^-4	0.882	SYNONYMOUS_CODING CG43329 UPSTREAM CG43330
2R	17886017	2R_17886017_SNP [dm3] 2R_21998512_SNP [dm6]	C	A	4.323e^-4	0.882	INTRON CG34370
3R	13963636	3R_13963636_SNP [dm3] 3R_18137914_SNP [dm6]	T	C	4.326e^-4	0.882	INTERGENIC
2L	6774970	2L_6774970_SNP [dm3] 2L_6774970_SNP [dm6]	G	T	4.326e^-4	0.882	UPSTREAM CG17378 INTRON CG17378
2R	16098655	2R_16098655_SNP [dm3] 2R_20211150_SNP [dm6]	A	T	4.331e^-4	0.882	DOWNSTREAM CG16894 INTERGENIC
X	7860452	X_7860452_SNP [dm3] X_7966419_SNP [dm6]	C	T	4.338e^-4	0.882	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8961279	X_8961279_SNP [dm3] X_9067246_SNP [dm6]	T	A	4.342e^-4	0.882	INTRON CG15365
2L	20933993	2L_20933993_SNP [dm3] 2L_20933993_SNP [dm6]	T	C	4.342e^-4	0.882	UTR_5_PRIME CG9270	TF binding site mE1_TFBS_zfh1
2L	9852616	2L_9852616_SNP [dm3] 2L_9852616_SNP [dm6]	G	T	4.344e^-4	0.882	INTRON nAChRalpha6
3L	6523230	3L_6523230_SNP [dm3] 3L_6530130_SNP [dm6]	A	T	4.346e^-4	0.882	UPSTREAM CG32396 INTRON sfl
3R	15913012	3R_15913012_SNP [dm3] 3R_20087290_SNP [dm6]	T	A	4.348e^-4	0.882	INTERGENIC
3R	19840098	3R_19840098_SNP [dm3] 3R_24014376_SNP [dm6]	T	C	4.355e^-4	0.882	INTRON KrT95D
3L	4066899	3L_4066899_SNP [dm3] 3L_4066899_SNP [dm6]	A	G	4.362e^-4	0.882	SYNONYMOUS_CODING wit	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9722503	2L_9722503_SNP [dm3] 2L_9722503_SNP [dm6]	C	T	4.365e^-4	0.882	INTRON Nckx30C	TF binding site mE1_TFBS_sens
3L	1395320	3L_1395320_SNP [dm3] 3L_1395320_SNP [dm6]	A	G	4.365e^-4	0.882	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl
2L	1792253	2L_1792253_SNP [dm3] 2L_1792253_SNP [dm6]	G	A	4.367e^-4	0.882	UPSTREAM Gr22c INTRON Gr22b	regulatory region REDfly_CRMs
2L	3971911	2L_3971911_SNP [dm3] 2L_3971911_SNP [dm6]	A	G	4.371e^-4	0.882	INTRON fred
3L	1771642	3L_1771642_SNP [dm3] 3L_1771642_SNP [dm6]	G	A	4.372e^-4	0.882	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG13933	TF binding site mE1_TFBS_chinmo
2R	9370990	2R_9370990_SNP [dm3] 2R_13483485_SNP [dm6]	A	T	4.376e^-4	0.882	UPSTREAM arr DOWNSTREAM cbc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20813601	2L_20813601_SNP [dm3] 2L_20813601_SNP [dm6]	T	C	4.385e^-4	0.882	SYNONYMOUS_CODING CG9328 DOWNSTREAM CG33322
3L	11453827	3L_11453827_SNP [dm3] 3L_11460727_SNP [dm6]	C	T	4.391e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_inv
2L	18810083	2L_18810083_SNP [dm3] 2L_18810083_SNP [dm6]	G	T	4.392e^-4	0.882	UTR_3_PRIME CG10570 & 1 other	TF binding site BDTNP1_TFBS_da
2R	3817907	2R_3817907_SNP [dm3] 2R_7930402_SNP [dm6]	A	G	4.394e^-4	0.882	DOWNSTREAM CG8791 & 1 other INTRON CG30381	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15913053	3R_15913053_SNP [dm3] 3R_20087331_SNP [dm6]	G	T	4.396e^-4	0.882	INTERGENIC
2L	16541940	2L_16541940_SNP [dm3] 2L_16541940_SNP [dm6]	T	G	4.397e^-4	0.882	UPSTREAM CG31816 INTERGENIC
2L	8468346	2L_8468346_SNP [dm3] 2L_8468346_SNP [dm6]	C	A	4.398e^-4	0.882	INTRON d	TF binding site mE1_TFBS_Kr
3R	7374676	3R_7374676_SNP [dm3] 3R_11548954_SNP [dm6]	C	G	4.408e^-4	0.882	INTERGENIC
2L	18794460	2L_18794460_SNP [dm3] 2L_18794460_SNP [dm6]	G	A	4.414e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5482639	X_5482639_SNP [dm3] X_5588606_SNP [dm6]	A	C	4.416e^-4	0.882	INTERGENIC
2L	14094836	2L_14094836_SNP [dm3] 2L_14094836_SNP [dm6]	G	A	4.418e^-4	0.882	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17672760	2R_17672760_SNP [dm3] 2R_21785255_SNP [dm6]	G	C	4.425e^-4	0.882	INTERGENIC
2R	5145371	2R_5145371_SNP [dm3] 2R_9257866_SNP [dm6]	C	T	4.426e^-4	0.882	SYNONYMOUS_CODING Pkn INTRON Pkn	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6723337	3R_6723337_SNP [dm3] 3R_10897615_SNP [dm6]	C	T	4.428e^-4	0.882	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	14674608	3R_14674608_SNP [dm3] 3R_18848886_SNP [dm6]	A	T	4.432e^-4	0.882	UTR_5_PRIME CG18208	TF binding site mE1_TFBS_Trl
X	11161385	X_11161385_SNP [dm3] X_11267352_SNP [dm6]	T	A	4.434e^-4	0.882	INTRON CG44422
2L	18143025	2L_18143025_SNP [dm3] 2L_18143025_SNP [dm6]	T	C	4.436e^-4	0.882	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6254565	3L_6254565_SNP [dm3] 3L_6261465_SNP [dm6]	C	G	4.437e^-4	0.882	UPSTREAM ImpL3 INTRON ImpL3
2L	8246800	2L_8246800_INS [dm3] 2L_8246800_INS [dm6]	A	AA	4.444e^-4	0.882	INTRON CG8086
2R	8864016	2R_8864016_SNP [dm3] 2R_12976511_SNP [dm6]	C	T	4.448e^-4	0.882	INTRON Psc	TF binding site mE1_TFBS_HSA
3L	13831531	3L_13831531_SNP [dm3] 3L_13838431_SNP [dm6]	A	G	4.453e^-4	0.882	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15787998	3R_15787998_SNP [dm3] 3R_19962276_SNP [dm6]	C	A	4.460e^-4	0.882	INTRON Hs6st
2L	1579121	2L_1579121_SNP [dm3] 2L_1579121_SNP [dm6]	A	T	4.460e^-4	0.882	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9049743	2L_9049743_SNP [dm3] 2L_9049743_SNP [dm6]	C	T	4.465e^-4	0.882	INTERGENIC
2L	10134248	2L_10134248_SNP [dm3] 2L_10134248_SNP [dm6]	T	C	4.467e^-4	0.882	INTRON CG44153
3R	19358567	3R_19358567_SNP [dm3] 3R_23532845_SNP [dm6]	C	A	4.471e^-4	0.882	DOWNSTREAM CG10170 INTERGENIC
2R	14784005	2R_14784005_DEL [dm3] 2R_18896500_DEL [dm6]	AT	A	4.471e^-4	0.882	INTRON sano
2L	11767024	2L_11767024_SNP [dm3] 2L_11767024_SNP [dm6]	A	G	4.478e^-4	0.882	INTERGENIC
3R	14134371	3R_14134371_SNP [dm3] 3R_18308649_SNP [dm6]	T	C	4.480e^-4	0.882	INTRON PKD
2L	16541814	2L_16541814_SNP [dm3] 2L_16541814_SNP [dm6]	G	T	4.483e^-4	0.882	UPSTREAM CG31816 INTERGENIC
3L	20563544	3L_20563544_SNP [dm3] 3L_20570444_SNP [dm6]	G	T	4.483e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12537512	3L_12537512_SNP [dm3] 3L_12544412_SNP [dm6]	T	C	4.484e^-4	0.882	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21181927	X_21181927_SNP [dm3] X_21310900_SNP [dm6]	C	T	4.485e^-4	0.882	INTRON CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1764760	3L_1764760_SNP [dm3] 3L_1764760_SNP [dm6]	G	T	4.492e^-4	0.882	INTRON Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9178091	X_9178091_SNP [dm3] X_9284058_SNP [dm6]	T	C	4.497e^-4	0.882	UPSTREAM c11.1 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	15324032	2R_15324032_SNP [dm3] 2R_19436527_SNP [dm6]	G	T	4.498e^-4	0.882	UPSTREAM Spt5 INTRON Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11603307	2L_11603307_SNP [dm3] 2L_11603307_SNP [dm6]	A	G	4.500e^-4	0.882	INTRON kek2
X	19737512	X_19737512_SNP [dm3] X_19843479_SNP [dm6]	G	T	4.506e^-4	0.882	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	7190630	3L_7190630_SNP [dm3] 3L_7197530_SNP [dm6]	A	G	4.516e^-4	0.882	INTERGENIC
3R	6680227	3R_6680227_SNP [dm3] 3R_10854505_SNP [dm6]	A	C	4.528e^-4	0.882	UTR_5_PRIME CG4511 UPSTREAM CG4511 & 1 other DOWNSTREAM CG4565	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8225078	2L_8225078_SNP [dm3] 2L_8225078_SNP [dm6]	T	C	4.543e^-4	0.882	INTRON Pvr
2L	17589980	2L_17589980_SNP [dm3] 2L_17589980_SNP [dm6]	G	A	4.550e^-4	0.882	UTR_5_PRIME Oli UPSTREAM Oli & 1 other INTRON Oli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10219777	3L_10219777_SNP [dm3] 3L_10226677_SNP [dm6]	G	A	4.550e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21470522	3L_21470522_SNP [dm3] 3L_21477422_SNP [dm6]	A	G	4.551e^-4	0.882	UPSTREAM croc INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20188249	2R_20188249_SNP [dm3] 2R_24300726_SNP [dm6]	T	A	4.553e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21129344	3R_21129344_SNP [dm3] 3R_25303622_SNP [dm6]	G	C	4.562e^-4	0.882	SYNONYMOUS_CODING CG31370 UPSTREAM CG31436
2L	9630130	2L_9630130_SNP [dm3] 2L_9630130_SNP [dm6]	A	T	4.565e^-4	0.882	INTERGENIC
3R	22997002	3R_22997002_SNP [dm3] 3R_27171280_SNP [dm6]	A	C	4.567e^-4	0.882	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2R	10813199	2R_10813199_SNP [dm3] 2R_14925694_SNP [dm6]	C	T	4.568e^-4	0.882	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6250324	2L_6250324_SNP [dm3] 2L_6250324_SNP [dm6]	T	A	4.577e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	13831612	3L_13831612_SNP [dm3] 3L_13838512_SNP [dm6]	G	A	4.577e^-4	0.882	DOWNSTREAM CG43184 INTERGENIC
3L	6565706	3L_6565706_SNP [dm3] 3L_6572606_SNP [dm6]	G	A	4.578e^-4	0.882	INTRON CG18769 & 1 other
3L	22313286	3L_22313286_SNP [dm3] 3L_22320186_SNP [dm6]	A	G	4.578e^-4	0.882	INTRON Ten-m
2R	11868189	2R_11868189_SNP [dm3] 2R_15980684_SNP [dm6]	C	T	4.583e^-4	0.882	SYNONYMOUS_CODING Strn-Mlck
X	7005895	X_7005895_SNP [dm3] X_7111862_SNP [dm6]	A	C	4.583e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1202364	2R_1202364_SNP [dm3] 2R_5314859_SNP [dm6]	C	T	4.592e^-4	0.882	INTRON sxc	transposable element FlyBase
2L	9055573	2L_9055573_SNP [dm3] 2L_9055573_SNP [dm6]	G	A	4.596e^-4	0.882	INTRON CG31708
2L	12355507	2L_12355507_SNP [dm3] 2L_12355507_SNP [dm6]	A	T	4.598e^-4	0.882	UPSTREAM CG17010 INTRON bru-2
2R	10070555	2R_10070555_SNP [dm3] 2R_14183050_SNP [dm6]	C	T	4.598e^-4	0.882	DOWNSTREAM cg INTERGENIC
3R	13979213	3R_13979213_SNP [dm3] 3R_18153491_SNP [dm6]	T	A	4.601e^-4	0.882	SYNONYMOUS_CODING CG14316
2R	8243827	2R_8243827_SNP [dm3] 2R_12356322_SNP [dm6]	T	C	4.601e^-4	0.882	DOWNSTREAM CG30047 INTRON CG30049	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6075578	3L_6075578_DEL [dm3] 3L_6082478_DEL [dm6]	TT	T	4.602e^-4	0.882	UTR_3_PRIME CG6619 UPSTREAM CG13293 DOWNSTREAM CG6619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20260076	3R_20260076_SNP [dm3] 3R_24434354_SNP [dm6]	T	C	4.603e^-4	0.882	INTRON nAChRalpha1
2L	3970602	2L_3970602_SNP [dm3] 2L_3970602_SNP [dm6]	T	C	4.617e^-4	0.882	INTRON fred
2L	2000492	2L_2000492_SNP [dm3] 2L_2000492_SNP [dm6]	A	G	4.617e^-4	0.882	INTRON CG33543 EXON CR43464
2R	6037082	2R_6037082_SNP [dm3] 2R_10149577_SNP [dm6]	A	G	4.624e^-4	0.882	INTRON KCNQ
2R	13853734	2R_13853734_SNP [dm3] 2R_17966229_SNP [dm6]	A	G	4.627e^-4	0.882	INTERGENIC
3L	13831525	3L_13831525_SNP [dm3] 3L_13838425_SNP [dm6]	T	A	4.628e^-4	0.882	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10216408	3R_10216408_SNP [dm3] 3R_14390686_SNP [dm6]	C	A	4.631e^-4	0.882	DOWNSTREAM cv-c INTERGENIC
2R	7652763	2R_7652763_SNP [dm3] 2R_11765258_SNP [dm6]	T	C	4.640e^-4	0.882	INTRON ths
3R	6548240	3R_6548240_SNP [dm3] 3R_10722518_SNP [dm6]	A	C	4.650e^-4	0.882	INTERGENIC
3L	22542882	3L_22542882_SNP [dm3] 3L_22549782_SNP [dm6]	C	G	4.661e^-4	0.882	UPSTREAM Trxr-2 DOWNSTREAM CG11404 INTERGENIC
3L	10207764	3L_10207764_SNP [dm3] 3L_10214664_SNP [dm6]	C	T	4.665e^-4	0.882	INTERGENIC
2L	16198271	2L_16198271_SNP [dm3] 2L_16198271_SNP [dm6]	A	G	4.672e^-4	0.882	INTERGENIC
2R	4128796	2R_4128796_SNP [dm3] 2R_8241291_SNP [dm6]	G	T	4.682e^-4	0.882	DOWNSTREAM pnut & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22315861	3L_22315861_SNP [dm3] 3L_22322761_SNP [dm6]	C	T	4.698e^-4	0.882	INTRON Ten-m
3R	14983712	3R_14983712_INS [dm3] 3R_19157990_INS [dm6]	A	AAAGCGA	4.698e^-4	0.882	UPSTREAM CG11779 INTRON CG11779 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	16043276	3L_16043276_SNP [dm3] 3L_16050176_SNP [dm6]	C	A	4.700e^-4	0.882	INTRON th EXON CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13960175	2R_13960175_SNP [dm3] 2R_18072670_SNP [dm6]	T	C	4.705e^-4	0.882	INTRON CG34386
2L	5508556	2L_5508556_SNP [dm3] 2L_5508556_SNP [dm6]	G	C	4.705e^-4	0.882	INTERGENIC
2L	13089101	2L_13089101_SNP [dm3] 2L_13089101_SNP [dm6]	C	T	4.715e^-4	0.882	UPSTREAM CR44197 INTERGENIC
2R	11030809	2R_11030809_SNP [dm3] 2R_15143304_SNP [dm6]	T	C	4.721e^-4	0.882	SYNONYMOUS_CODING chn UTR_3_PRIME chn	TF binding site mE1_TFBS_cad
2L	20807719	2L_20807719_SNP [dm3] 2L_20807719_SNP [dm6]	G	A	4.721e^-4	0.882	INTRON CG9328
2R	8172927	2R_8172927_SNP [dm3] 2R_12285422_SNP [dm6]	A	C	4.735e^-4	0.882	UPSTREAM CG42700 INTRON CG42700
X	16580537	X_16580537_SNP [dm3] X_16686504_SNP [dm6]	C	G	4.745e^-4	0.882	SYNONYMOUS_CODING Sep4
2R	17836037	2R_17836037_SNP [dm3] 2R_21948532_SNP [dm6]	A	C	4.747e^-4	0.882	INTERGENIC
X	16581145	X_16581145_SNP [dm3] X_16687112_SNP [dm6]	G	T	4.749e^-4	0.882	INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4982075	2L_4982075_SNP [dm3] 2L_4982075_SNP [dm6]	A	G	4.755e^-4	0.882	UPSTREAM CG8892 INTRON CG34126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9911664	2L_9911664_SNP [dm3] 2L_9911664_SNP [dm6]	G	A	4.758e^-4	0.882	SYNONYMOUS_CODING Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	3111582	2R_3111582_SNP [dm3] 2R_7224077_SNP [dm6]	C	T	4.758e^-4	0.882	DOWNSTREAM pk INTERGENIC
3R	6548442	3R_6548442_SNP [dm3] 3R_10722720_SNP [dm6]	A	C	4.759e^-4	0.882	INTERGENIC
3L	1771672	3L_1771672_SNP [dm3] 3L_1771672_SNP [dm6]	A	G	4.759e^-4	0.882	UTR_5_PRIME Dhc62B DOWNSTREAM CG13933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10249389	2R_10249389_SNP [dm3] 2R_14361884_SNP [dm6]	G	A	4.759e^-4	0.882	UPSTREAM Arc2 & 1 other INTERGENIC
3L	22533706	3L_22533706_SNP [dm3] 3L_22540606_SNP [dm6]	C	T	4.762e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20826723	2L_20826723_SNP [dm3] 2L_20826723_SNP [dm6]	T	C	4.767e^-4	0.882	SYNONYMOUS_CODING CG9331
3L	7221617	3L_7221617_SNP [dm3] 3L_7228517_SNP [dm6]	A	G	4.769e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb

By genomic position
Variant impact
Gene name

cv_BoutLength_Night phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results