DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.014e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.08949

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.269	0.0435
In_3R_Mo	5.3132	0.0702

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2021 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8394094	X_8394094_SNP [dm3] X_8500061_SNP [dm6]	A	G	5.714e^-7	0.919	INTRON CG33181
2L	5393422	2L_5393422_SNP [dm3] 2L_5393422_SNP [dm6]	T	C	1.332e^-6	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6860355	2L_6860355_SNP [dm3] 2L_6860355_SNP [dm6]	G	A	4.529e^-6	0.919	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16665748	X_16665748_SNP [dm3] X_16771715_SNP [dm6]	T	G	4.748e^-6	0.919	INTRON if
X	4457446	X_4457446_SNP [dm3] X_4563413_SNP [dm6]	T	A	7.295e^-6	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19192902	2R_19192902_SNP [dm3] 2R_23305379_SNP [dm6]	C	A	7.714e^-6	0.919	INTERGENIC
2R	4200078	2R_4200078_DEL [dm3] 2R_8312573_DEL [dm6]	CTCTT	AA	8.077e^-6	0.919	DOWNSTREAM CR44450 INTERGENIC
2R	19284821	2R_19284821_SNP [dm3] 2R_23397298_SNP [dm6]	G	T	8.167e^-6	0.919	SYNONYMOUS_CODING CG3520 UPSTREAM CG3530	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16460862	3L_16460862_SNP [dm3] 3L_16467762_SNP [dm6]	A	G	8.698e^-6	0.919	INTRON CG33158
2R	7150271	2R_7150271_SNP [dm3] 2R_11262766_SNP [dm6]	T	C	9.902e^-6	0.919	UPSTREAM Cpr47Ed INTERGENIC
2R	16562368	2R_16562368_SNP [dm3] 2R_20674863_SNP [dm6]	G	A	9.971e^-6	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10242258	3R_10242258_SNP [dm3] 3R_14416536_SNP [dm6]	G	A	1.027e^-5	0.919	SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13651481	3L_13651481_SNP [dm3] 3L_13658381_SNP [dm6]	T	A	1.027e^-5	0.919	INTRON bru-3	TF binding site mE1_TFBS_chinmo
X	4457545	X_4457545_SNP [dm3] X_4563512_SNP [dm6]	A	G	1.214e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9315610	3L_9315610_SNP [dm3] 3L_9322510_SNP [dm6]	A	G	1.311e^-5	0.919	INTERGENIC
2R	20031864	2R_20031864_SNP [dm3] 2R_24144341_SNP [dm6]	A	G	1.429e^-5	0.919	INTRON Dat
X	12198795	X_12198795_SNP [dm3] X_12304762_SNP [dm6]	G	A	1.476e^-5	0.919	INTRON Ten-a
3R	8031059	3R_8031059_SNP [dm3] 3R_12205337_SNP [dm6]	G	A	1.480e^-5	0.919	INTERGENIC
3L	6088856	3L_6088856_SNP [dm3] 3L_6095756_SNP [dm6]	A	T	1.558e^-5	0.919	SYNONYMOUS_CODING loj	TF binding site mE1_TFBS_sens
2L	8743608	2L_8743608_SNP [dm3] 2L_8743608_SNP [dm6]	A	G	1.572e^-5	0.919	INTERGENIC
3R	10242056	3R_10242056_SNP [dm3] 3R_14416334_SNP [dm6]	G	T	1.650e^-5	0.919	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18993114	X_18993114_SNP [dm3] X_19099081_SNP [dm6]	A	G	1.673e^-5	0.919	INTERGENIC
3L	13308708	3L_13308708_SNP [dm3] 3L_13315608_SNP [dm6]	T	C	1.768e^-5	0.919	INTERGENIC
3L	2137193	3L_2137193_SNP [dm3] 3L_2137193_SNP [dm6]	A	T	1.965e^-5	0.919	INTRON zormin
3L	13163006	3L_13163006_SNP [dm3] 3L_13169906_SNP [dm6]	C	T	2.074e^-5	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
X	4457491	X_4457491_INS [dm3] X_4563458_INS [dm6]	T	TGGGCGGTT	2.110e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457494	X_4457494_INS [dm3] X_4563461_INS [dm6]	A	AAATGCC	2.110e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457497	X_4457497_INS [dm3] X_4563464_INS [dm6]	T	TGGTG	2.110e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457558	X_4457558_SNP [dm3] X_4563525_SNP [dm6]	T	C	2.110e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6468370	3L_6468370_SNP [dm3] 3L_6475270_SNP [dm6]	A	C	2.174e^-5	0.919	INTRON CG42747
2L	11225773	2L_11225773_SNP [dm3] 2L_11225773_SNP [dm6]	G	A	2.199e^-5	0.919	UTR_5_PRIME ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8318360	2R_8318360_SNP [dm3] 2R_12430855_SNP [dm6]	C	A	2.242e^-5	0.919	NON_SYNONYMOUS_CODING CG43204 DOWNSTREAM DUBAI INTRON Nup54	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	9507480	3L_9507480_SNP [dm3] 3L_9514380_SNP [dm6]	T	C	2.310e^-5	0.919	SYNONYMOUS_CODING CG33700 UPSTREAM CG33702 & 1 other
X	4457501	X_4457501_SNP [dm3] X_4563468_SNP [dm6]	T	C	2.324e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4457594	X_4457594_DEL [dm3] X_4563561_DEL [dm6]	ACCATGTAAGTCAACCCA...	A	2.332e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11886948	2R_11886948_SNP [dm3] 2R_15999443_SNP [dm6]	A	T	2.367e^-5	0.919	INTRON ATPCL
3L	14734317	3L_14734317_SNP [dm3] 3L_14741217_SNP [dm6]	T	G	2.493e^-5	0.919	INTRON ome
3L	8441742	3L_8441742_SNP [dm3] 3L_8448642_SNP [dm6]	T	G	2.532e^-5	0.919	INTRON CG6983	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
2L	7881118	2L_7881118_SNP [dm3] 2L_7881118_SNP [dm6]	A	G	2.557e^-5	0.919	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	2355460	2L_2355460_SNP [dm3] 2L_2355460_SNP [dm6]	A	T	2.624e^-5	0.919	INTRON CG9967 & 1 other
2L	6854075	2L_6854075_SNP [dm3] 2L_6854075_SNP [dm6]	G	A	2.656e^-5	0.919	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4457499	X_4457499_INS [dm3] X_4563466_INS [dm6]	A	AAGT	2.735e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15004294	3R_15004294_SNP [dm3] 3R_19178572_SNP [dm6]	G	A	2.904e^-5	0.919	DOWNSTREAM CG14282 INTRON CG5555
3L	1583784	3L_1583784_SNP [dm3] 3L_1583784_SNP [dm6]	C	A	3.168e^-5	0.919	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9682445	3R_9682445_SNP [dm3] 3R_13856723_SNP [dm6]	G	A	3.199e^-5	0.919	INTERGENIC
3L	9140044	3L_9140044_SNP [dm3] 3L_9146944_SNP [dm6]	A	T	3.225e^-5	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	7150254	2R_7150254_SNP [dm3] 2R_11262749_SNP [dm6]	G	A	3.457e^-5	0.919	UPSTREAM Cpr47Ed INTERGENIC
2R	12472142	2R_12472142_SNP [dm3] 2R_16584637_SNP [dm6]	C	T	3.730e^-5	0.919	SYNONYMOUS_CODING Cdk4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10701916	3L_10701916_SNP [dm3] 3L_10708816_SNP [dm6]	T	G	3.849e^-5	0.919	INTERGENIC
X	13920806	X_13920806_SNP [dm3] X_14026773_SNP [dm6]	T	C	3.851e^-5	0.919	INTERGENIC
3L	7639739	3L_7639739_SNP [dm3] 3L_7646639_SNP [dm6]	A	G	4.012e^-5	0.919	INTERGENIC
3L	6052401	3L_6052401_SNP [dm3] 3L_6059301_SNP [dm6]	G	T	4.013e^-5	0.919	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	13308723	3L_13308723_SNP [dm3] 3L_13315623_SNP [dm6]	A	T	4.082e^-5	0.919	INTERGENIC
2R	17656577	2R_17656577_SNP [dm3] 2R_21769072_SNP [dm6]	T	C	4.140e^-5	0.919	NON_SYNONYMOUS_CODING CG30395
2L	6860082	2L_6860082_SNP [dm3] 2L_6860082_SNP [dm6]	G	A	4.184e^-5	0.919	SYNONYMOUS_CODING l_2_k09022 DOWNSTREAM Nha1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15004313	3R_15004313_SNP [dm3] 3R_19178591_SNP [dm6]	G	A	4.195e^-5	0.919	DOWNSTREAM CG14282 INTRON CG5555	TF binding site mE1_TFBS_sens
3L	6791730	3L_6791730_SNP [dm3] 3L_6798630_SNP [dm6]	A	G	4.375e^-5	0.919	INTERGENIC
3L	6088886	3L_6088886_SNP [dm3] 3L_6095786_SNP [dm6]	T	A	4.380e^-5	0.919	SYNONYMOUS_CODING loj	TF binding site mE1_TFBS_sens
3L	9583446	3L_9583446_INS [dm3] 3L_9590346_INS [dm6]	A	ACTTA	4.391e^-5	0.919	INTRON CG42673
3R	15004303	3R_15004303_DEL [dm3] 3R_19178581_DEL [dm6]	TGGTTA	C	4.485e^-5	0.919	DOWNSTREAM CG14282 INTRON CG5555
3R	15004314	3R_15004314_SNP [dm3] 3R_19178592_SNP [dm6]	G	C	4.485e^-5	0.919	DOWNSTREAM CG14282 INTRON CG5555	TF binding site mE1_TFBS_sens
3L	16112536	3L_16112536_DEL [dm3] 3L_16119436_DEL [dm6]	ATTGA	A	4.494e^-5	0.919	INTRON Taf4	TF binding site mE1_TFBS_cad
2R	9839886	2R_9839886_INS [dm3] 2R_13952381_INS [dm6]	A	AA	4.503e^-5	0.919	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
3L	10521307	3L_10521307_SNP [dm3] 3L_10528207_SNP [dm6]	G	A	4.544e^-5	0.919	INTRON A2bp1
X	17445092	X_17445092_SNP [dm3] X_17551059_SNP [dm6]	T	C	4.574e^-5	0.919	INTRON CG43658
2L	1954687	2L_1954687_SNP [dm3] 2L_1954687_SNP [dm6]	G	A	4.601e^-5	0.919	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10741595	3L_10741595_SNP [dm3] 3L_10748495_SNP [dm6]	C	T	4.681e^-5	0.919	INTERGENIC
2R	3650404	2R_3650404_SNP [dm3] 2R_7762899_SNP [dm6]	A	G	4.734e^-5	0.919	INTRON CG30497 & 1 other
3L	9507191	3L_9507191_SNP [dm3] 3L_9514091_SNP [dm6]	A	G	4.745e^-5	0.919	UPSTREAM CG33702 & 1 other DOWNSTREAM CG33700 INTERGENIC
3L	16744830	3L_16744830_SNP [dm3] 3L_16751730_SNP [dm6]	C	G	4.776e^-5	0.919	INTERGENIC
X	9186904	X_9186904_SNP [dm3] X_9292871_SNP [dm6]	T	C	4.840e^-5	0.919	INTRON lz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4123984	3L_4123984_SNP [dm3] 3L_4123984_SNP [dm6]	A	T	4.861e^-5	0.919	UTR_3_PRIME ens
2R	18488998	2R_18488998_SNP [dm3] 2R_22601493_SNP [dm6]	T	A	4.902e^-5	0.919	DOWNSTREAM CG4269 INTRON CG4294	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6850382	2L_6850382_SNP [dm3] 2L_6850382_SNP [dm6]	C	T	4.904e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15328274	2L_15328274_SNP [dm3] 2L_15328274_SNP [dm6]	C	T	4.970e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	15090423	2R_15090423_SNP [dm3] 2R_19202918_SNP [dm6]	T	G	5.104e^-5	0.919	INTRON hppy
2R	12880251	2R_12880251_DEL [dm3] 2R_16992746_DEL [dm6]	CTC	C	5.106e^-5	0.919	INTRON Cbp53E
3L	16460864	3L_16460864_SNP [dm3] 3L_16467764_SNP [dm6]	C	T	5.121e^-5	0.919	INTRON CG33158
3L	16744832	3L_16744832_SNP [dm3] 3L_16751732_SNP [dm6]	C	G	5.126e^-5	0.919	INTERGENIC
X	16909925	X_16909925_SNP [dm3] X_17015892_SNP [dm6]	C	G	5.143e^-5	0.919	INTRON CG45002
2R	7150261	2R_7150261_DEL [dm3] 2R_11262756_DEL [dm6]	TGACTGTAA	T	5.251e^-5	0.919	UPSTREAM Cpr47Ed INTERGENIC
2L	3420720	2L_3420720_SNP [dm3] 2L_3420720_SNP [dm6]	T	C	5.255e^-5	0.919	INTRON pgant2
2L	11226037	2L_11226037_SNP [dm3] 2L_11226037_SNP [dm6]	G	T	5.322e^-5	0.919	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9140046	3L_9140046_SNP [dm3] 3L_9146946_SNP [dm6]	T	C	5.350e^-5	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	12604028	3L_12604028_SNP [dm3] 3L_12610928_SNP [dm6]	C	A	5.424e^-5	0.919	INTRON caup	TF binding site mE1_TFBS_HSA
2L	5405578	2L_5405578_SNP [dm3] 2L_5405578_SNP [dm6]	G	A	5.429e^-5	0.919	INTRON H15
2R	18494413	2R_18494413_SNP [dm3] 2R_22606908_SNP [dm6]	T	C	5.430e^-5	0.919	UPSTREAM snoRNA:Psi28S-1175a & 3 others DOWNSTREAM snoRNA:Me28S-G2173 INTRON RpS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14052697	2R_14052697_SNP [dm3] 2R_18165192_SNP [dm6]	C	A	5.452e^-5	0.919	SYNONYMOUS_CODING Nup75 DOWNSTREAM CG10915
X	5972530	X_5972530_SNP [dm3] X_6078497_SNP [dm6]	T	C	5.456e^-5	0.919	UPSTREAM CG4666 DOWNSTREAM CG4660 INTERGENIC
2L	1953926	2L_1953926_SNP [dm3] 2L_1953926_SNP [dm6]	G	A	5.514e^-5	0.919	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3969662	3L_3969662_SNP [dm3] 3L_3969662_SNP [dm6]	T	C	5.577e^-5	0.919	INTERGENIC
3L	6758469	3L_6758469_SNP [dm3] 3L_6765369_SNP [dm6]	A	T	5.618e^-5	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13916030	2R_13916030_SNP [dm3] 2R_18028525_SNP [dm6]	C	T	5.671e^-5	0.919	INTERGENIC
3L	9140053	3L_9140053_SNP [dm3] 3L_9146953_SNP [dm6]	T	A	5.680e^-5	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	17063339	2R_17063339_INS [dm3] 2R_21175834_INS [dm6]	C	AAGCTGAACAAATGAATCCC...	5.711e^-5	0.919	INTRON Pu
3L	1583967	3L_1583967_SNP [dm3] 3L_1583967_SNP [dm6]	C	T	5.751e^-5	0.919	INTRON CG13917	TF binding site mE1_TFBS_HSA
X	6600895	X_6600895_INS [dm3] X_6706862_INS [dm6]	G	GAG	5.755e^-5	0.919	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5663677	3L_5663677_INS [dm3] 3L_5670577_INS [dm6]	T	TCACAGATAAAGTGT...	5.880e^-5	0.919	INTRON sif
2R	7150224	2R_7150224_SNP [dm3] 2R_11262719_SNP [dm6]	A	T	5.895e^-5	0.919	UPSTREAM Cpr47Ed INTERGENIC
3L	6791758	3L_6791758_SNP [dm3] 3L_6798658_SNP [dm6]	T	G	5.995e^-5	0.919	INTERGENIC
3L	8404936	3L_8404936_SNP [dm3] 3L_8411836_SNP [dm6]	A	G	5.996e^-5	0.919	UTR_5_PRIME Oseg1 UPSTREAM Exo70 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA
3L	1489390	3L_1489390_DEL [dm3] 3L_1489390_DEL [dm6]	TGCT	T	6.082e^-5	0.919	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1489396	3L_1489396_DEL [dm3] 3L_1489396_DEL [dm6]	CG	C	6.082e^-5	0.919	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1489403	3L_1489403_DEL [dm3] 3L_1489403_DEL [dm6]	CTG	C	6.082e^-5	0.919	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13948344	2R_13948344_INS [dm3] 2R_18060839_INS [dm6]	C	CATTC	6.125e^-5	0.919	INTERGENIC
3R	10058466	3R_10058466_SNP [dm3] 3R_14232744_SNP [dm6]	C	T	6.216e^-5	0.919	INTERGENIC
2L	11226056	2L_11226056_SNP [dm3] 2L_11226056_SNP [dm6]	G	T	6.232e^-5	0.919	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25646607	3R_25646607_SNP [dm3] 3R_29820885_SNP [dm6]	G	T	6.306e^-5	0.919	INTRON neo
3L	5420689	3L_5420689_SNP [dm3] 3L_5427589_SNP [dm6]	C	G	6.322e^-5	0.919	INTRON CG34391
3R	26595311	3R_26595311_SNP [dm3] 3R_30769589_SNP [dm6]	C	T	6.425e^-5	0.919	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12863995	2R_12863995_SNP [dm3] 2R_16976490_SNP [dm6]	C	G	6.437e^-5	0.919	INTRON Cbp53E
3L	1489401	3L_1489401_SNP [dm3] 3L_1489401_SNP [dm6]	C	T	6.441e^-5	0.919	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4345904	2L_4345904_SNP [dm3] 2L_4345904_SNP [dm6]	C	T	6.442e^-5	0.919	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	10521285	3L_10521285_SNP [dm3] 3L_10528185_SNP [dm6]	T	A	6.444e^-5	0.919	INTRON A2bp1
3R	7131983	3R_7131983_DEL [dm3] 3R_11306261_DEL [dm6]	AA	A	6.448e^-5	0.919	UPSTREAM CR31386 INTERGENIC
2L	1954616	2L_1954616_SNP [dm3] 2L_1954616_SNP [dm6]	G	A	6.491e^-5	0.919	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18194225	2R_18194225_SNP [dm3] 2R_22306720_SNP [dm6]	T	A	6.553e^-5	0.919	INTRON wdp
2R	7150297	2R_7150297_SNP [dm3] 2R_11262792_SNP [dm6]	T	C	6.553e^-5	0.919	UPSTREAM Cpr47Ed INTERGENIC
3L	5420931	3L_5420931_SNP [dm3] 3L_5427831_SNP [dm6]	G	C	6.553e^-5	0.919	INTRON CG34391
2L	18025605	2L_18025605_SNP [dm3] 2L_18025605_SNP [dm6]	C	T	6.559e^-5	0.919	INTRON rdo
X	19537488	X_19537488_SNP [dm3] X_19643455_SNP [dm6]	T	C	6.631e^-5	0.919	UTR_5_PRIME Sec61gamma UPSTREAM Sec61gamma & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12939717	3R_12939717_INS [dm3] 3R_17113995_INS [dm6]	A	AGGGCTAG	6.765e^-5	0.919	INTRON cher
3L	7105617	3L_7105617_SNP [dm3] 3L_7112517_SNP [dm6]	C	A	6.828e^-5	0.919	INTRON form3
3L	6088757	3L_6088757_SNP [dm3] 3L_6095657_SNP [dm6]	C	A	7.062e^-5	0.919	SYNONYMOUS_CODING loj UPSTREAM CG10467
2L	17517349	2L_17517349_SNP [dm3] 2L_17517349_SNP [dm6]	G	A	7.089e^-5	0.919	INTRON Dhc36C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7807140	2L_7807140_SNP [dm3] 2L_7807140_SNP [dm6]	C	T	7.116e^-5	0.919	INTRON cdc14
2R	7150282	2R_7150282_SNP [dm3] 2R_11262777_SNP [dm6]	T	A	7.182e^-5	0.919	UPSTREAM Cpr47Ed INTERGENIC
2R	16466867	2R_16466867_SNP [dm3] 2R_20579362_SNP [dm6]	A	C	7.424e^-5	0.919	INTRON qsm
3R	3487810	3R_3487810_SNP [dm3] 3R_7662088_SNP [dm6]	A	G	7.449e^-5	0.919	INTRON Nlg1
3L	7105603	3L_7105603_SNP [dm3] 3L_7112503_SNP [dm6]	A	G	7.594e^-5	0.919	INTRON form3
3L	7105606	3L_7105606_SNP [dm3] 3L_7112506_SNP [dm6]	G	T	7.594e^-5	0.919	INTRON form3
3L	7105607	3L_7105607_SNP [dm3] 3L_7112507_SNP [dm6]	G	T	7.594e^-5	0.919	INTRON form3
3L	7105609	3L_7105609_DEL [dm3] 3L_7112509_DEL [dm6]	GCACT	A	7.594e^-5	0.919	INTRON form3
2L	12153905	2L_12153905_SNP [dm3] 2L_12153905_SNP [dm6]	C	T	7.596e^-5	0.919	SYNONYMOUS_CODING CG31760
X	1095152	X_1095152_SNP [dm3] X_1201119_SNP [dm6]	G	A	7.640e^-5	0.919	NON_SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10143553	3R_10143553_SNP [dm3] 3R_14317831_SNP [dm6]	T	C	7.651e^-5	0.919	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo
2L	13500721	2L_13500721_SNP [dm3] 2L_13500721_SNP [dm6]	G	A	7.755e^-5	0.919	UTR_3_PRIME B4 DOWNSTREAM CG42784	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	14745265	X_14745265_SNP [dm3] X_14851232_SNP [dm6]	T	G	7.802e^-5	0.919	UTR_3_PRIME CG9521 INTRON Flo2
3L	8567384	3L_8567384_SNP [dm3] 3L_8574284_SNP [dm6]	C	A	7.820e^-5	0.919	UTR_3_PRIME rhea DOWNSTREAM CG6638
3R	13827267	3R_13827267_SNP [dm3] 3R_18001545_SNP [dm6]	G	A	7.841e^-5	0.919	INTRON cpo
X	5975859	X_5975859_SNP [dm3] X_6081826_SNP [dm6]	A	T	7.883e^-5	0.919	UPSTREAM CG4660 DOWNSTREAM raptor & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	6777077	2R_6777077_SNP [dm3] 2R_10889572_SNP [dm6]	T	C	7.964e^-5	0.919	INTRON CG30020
3L	7105615	3L_7105615_SNP [dm3] 3L_7112515_SNP [dm6]	A	G	8.038e^-5	0.919	INTRON form3
2R	16367270	2R_16367270_SNP [dm3] 2R_20479765_SNP [dm6]	A	G	8.072e^-5	0.919	DOWNSTREAM CG12484 INTERGENIC
X	461922	X_461922_SNP [dm3] X_567889_SNP [dm6]	C	T	8.151e^-5	0.919	INTRON Appl
X	12185041	X_12185041_SNP [dm3] X_12291008_SNP [dm6]	A	G	8.152e^-5	0.919	INTRON Ten-a
2R	12472139	2R_12472139_SNP [dm3] 2R_16584634_SNP [dm6]	A	G	8.153e^-5	0.919	SYNONYMOUS_CODING Cdk4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2206621	2L_2206621_SNP [dm3] 2L_2206621_SNP [dm6]	A	G	8.192e^-5	0.919	UTR_3_PRIME CG33124 UPSTREAM CG31668
3L	8404668	3L_8404668_SNP [dm3] 3L_8411568_SNP [dm6]	A	G	8.273e^-5	0.919	UTR_5_PRIME Oseg1 UPSTREAM Exo70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15437203	2L_15437203_SNP [dm3] 2L_15437203_SNP [dm6]	G	T	8.404e^-5	0.919	DOWNSTREAM CR44861 INTERGENIC
3R	9748438	3R_9748438_SNP [dm3] 3R_13922716_SNP [dm6]	G	C	8.439e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5174990	3R_5174990_SNP [dm3] 3R_9349268_SNP [dm6]	C	A	8.456e^-5	0.919	INTRON CG45050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15090408	2R_15090408_SNP [dm3] 2R_19202903_SNP [dm6]	T	A	8.458e^-5	0.919	INTRON hppy
3L	10521274	3L_10521274_SNP [dm3] 3L_10528174_SNP [dm6]	G	C	8.466e^-5	0.919	INTRON A2bp1
3L	8810231	3L_8810231_SNP [dm3] 3L_8817131_SNP [dm6]	A	T	8.579e^-5	0.919	INTERGENIC
2L	13839133	2L_13839133_SNP [dm3] 2L_13839133_SNP [dm6]	G	T	8.592e^-5	0.919	DOWNSTREAM CG33307 INTRON CenG1A
3R	18954718	3R_18954718_SNP [dm3] 3R_23128996_SNP [dm6]	G	T	8.667e^-5	0.919	SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	576737	X_576737_SNP [dm3] X_682704_SNP [dm6]	T	C	8.722e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	14722832	3L_14722832_SNP [dm3] 3L_14729732_SNP [dm6]	T	A	8.883e^-5	0.919	DOWNSTREAM CG13473 INTRON ome
3L	9187301	3L_9187301_SNP [dm3] 3L_9194201_SNP [dm6]	A	T	8.892e^-5	0.919	INTERGENIC
2R	18194932	2R_18194932_SNP [dm3] 2R_22307427_SNP [dm6]	T	A	8.938e^-5	0.919	INTRON wdp
2L	4345911	2L_4345911_SNP [dm3] 2L_4345911_SNP [dm6]	A	C	8.949e^-5	0.919	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	13162905	3L_13162905_SNP [dm3] 3L_13169805_SNP [dm6]	T	G	8.972e^-5	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
X	4457368	X_4457368_SNP [dm3] X_4563335_SNP [dm6]	G	T	8.976e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15004317	3R_15004317_SNP [dm3] 3R_19178595_SNP [dm6]	A	C	9.005e^-5	0.919	DOWNSTREAM CG14282 INTRON CG5555	TF binding site mE1_TFBS_sens
2L	22538340	2L_22538340_SNP [dm3] 2L_22645608_SNP [dm6]	G	C	9.043e^-5	0.919	INTRON CG40006
2R	12372213	2R_12372213_SNP [dm3] 2R_16484708_SNP [dm6]	C	T	9.046e^-5	0.919	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12372206	2R_12372206_SNP [dm3] 2R_16484701_SNP [dm6]	T	C	9.062e^-5	0.919	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9260825	3L_9260825_INS [dm3] 3L_9267725_INS [dm6]	T	TTTTCATGCAT...	9.113e^-5	0.919	INTRON GluRIB
3L	8810166	3L_8810166_SNP [dm3] 3L_8817066_SNP [dm6]	T	C	9.151e^-5	0.919	INTERGENIC
3L	9259847	3L_9259847_SNP [dm3] 3L_9266747_SNP [dm6]	A	C	9.174e^-5	0.919	INTRON GluRIB
2R	13935887	2R_13935887_SNP [dm3] 2R_18048382_SNP [dm6]	A	G	9.280e^-5	0.919	NON_SYNONYMOUS_CODING CG34005 UPSTREAM CG5767 DOWNSTREAM CG14495	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	10741808	3L_10741808_SNP [dm3] 3L_10748708_SNP [dm6]	A	T	9.342e^-5	0.919	INTERGENIC
3L	10815335	3L_10815335_SNP [dm3] 3L_10822235_SNP [dm6]	A	T	9.539e^-5	0.919	INTERGENIC
X	12184987	X_12184987_SNP [dm3] X_12290954_SNP [dm6]	A	C	9.625e^-5	0.919	INTRON Ten-a
X	768139	X_768139_SNP [dm3] X_874106_SNP [dm6]	T	A	9.765e^-5	0.919	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2L	3875308	2L_3875308_SNP [dm3] 2L_3875308_SNP [dm6]	T	G	9.778e^-5	0.919	SPLICE_SITE_REGION capu INTRON capu	TF binding site mE1_TFBS_chinmo
2R	11891614	2R_11891614_SNP [dm3] 2R_16004109_SNP [dm6]	C	A	9.891e^-5	0.919	NON_SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	3782224	3R_3782224_SNP [dm3] 3R_7956502_SNP [dm6]	G	C	9.901e^-5	0.919	INTRON dsx
X	7245258	X_7245258_SNP [dm3] X_7351225_SNP [dm6]	T	A	1.003e^-4	0.919	INTRON CR44357 & 1 other
3L	15059166	3L_15059166_SNP [dm3] 3L_15066066_SNP [dm6]	C	A	1.008e^-4	0.919	DOWNSTREAM cp309 INTERGENIC
3R	24898469	3R_24898469_SNP [dm3] 3R_29072747_SNP [dm6]	C	T	1.010e^-4	0.919	INTRON CG11873	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25118028	3R_25118028_SNP [dm3] 3R_29292306_SNP [dm6]	G	T	1.017e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15059158	3L_15059158_SNP [dm3] 3L_15066058_SNP [dm6]	T	A	1.021e^-4	0.919	DOWNSTREAM cp309 INTERGENIC
3L	15059157	3L_15059157_SNP [dm3] 3L_15066057_SNP [dm6]	T	A	1.025e^-4	0.919	DOWNSTREAM cp309 INTERGENIC
X	16909958	X_16909958_SNP [dm3] X_17015925_SNP [dm6]	T	A	1.026e^-4	0.919	INTRON CG45002
3L	4031306	3L_4031306_SNP [dm3] 3L_4031306_SNP [dm6]	A	C	1.027e^-4	0.919	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b UPSTREAM Gr64d & 1 other	TF binding site mE1_TFBS_cad
3L	10521275	3L_10521275_SNP [dm3] 3L_10528175_SNP [dm6]	T	C	1.033e^-4	0.919	INTRON A2bp1
3L	8810163	3L_8810163_SNP [dm3] 3L_8817063_SNP [dm6]	C	T	1.034e^-4	0.919	INTERGENIC
X	12248211	X_12248211_SNP [dm3] X_12354178_SNP [dm6]	T	C	1.050e^-4	0.919	INTERGENIC
2R	19285040	2R_19285040_SNP [dm3] 2R_23397517_SNP [dm6]	T	C	1.054e^-4	0.919	SYNONYMOUS_CODING CG3520 UPSTREAM CG3530	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	8810143	3L_8810143_SNP [dm3] 3L_8817043_SNP [dm6]	A	G	1.054e^-4	0.919	INTERGENIC
3L	6791704	3L_6791704_SNP [dm3] 3L_6798604_SNP [dm6]	G	A	1.064e^-4	0.919	INTERGENIC
3R	18911761	3R_18911761_SNP [dm3] 3R_23086039_SNP [dm6]	T	G	1.066e^-4	0.919	INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12603998	3L_12603998_SNP [dm3] 3L_12610898_SNP [dm6]	T	A	1.071e^-4	0.919	INTRON caup	TF binding site mE1_TFBS_HSA
3L	9313759	3L_9313759_DEL [dm3] 3L_9320659_DEL [dm6]	TTGTT	T	1.071e^-4	0.919	INTERGENIC
3L	8404909	3L_8404909_SNP [dm3] 3L_8411809_SNP [dm6]	G	A	1.072e^-4	0.919	UTR_5_PRIME Oseg1 UPSTREAM Exo70 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA
2L	5632092	2L_5632092_SNP [dm3] 2L_5632092_SNP [dm6]	T	C	1.078e^-4	0.919	SYNONYMOUS_CODING CG31646 EXON CR44822
3L	6067864	3L_6067864_SNP [dm3] 3L_6074764_SNP [dm6]	G	C	1.085e^-4	0.919	SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7852626	3L_7852626_SNP [dm3] 3L_7859526_SNP [dm6]	A	T	1.100e^-4	0.919	INTRON Pdp1
3L	9019970	3L_9019970_SNP [dm3] 3L_9026870_SNP [dm6]	A	T	1.101e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15472666	2R_15472666_SNP [dm3] 2R_19585161_SNP [dm6]	T	G	1.104e^-4	0.919	INTRON sm
3R	24901783	3R_24901783_SNP [dm3] 3R_29076061_SNP [dm6]	T	G	1.109e^-4	0.919	INTRON CG11873	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6438813	2R_6438813_SNP [dm3] 2R_10551308_SNP [dm6]	A	G	1.114e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9140041	3L_9140041_SNP [dm3] 3L_9146941_SNP [dm6]	T	A	1.120e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	15437178	2L_15437178_SNP [dm3] 2L_15437178_SNP [dm6]	C	G	1.126e^-4	0.919	DOWNSTREAM CR44861 INTERGENIC
2L	6853910	2L_6853910_SNP [dm3] 2L_6853910_SNP [dm6]	T	A	1.127e^-4	0.919	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9682374	3R_9682374_SNP [dm3] 3R_13856652_SNP [dm6]	G	A	1.140e^-4	0.919	INTERGENIC
3L	6791693	3L_6791693_SNP [dm3] 3L_6798593_SNP [dm6]	C	A	1.151e^-4	0.919	INTERGENIC
3R	9267296	3R_9267296_DEL [dm3] 3R_13441574_DEL [dm6]	CACCATACCTTCACCTACAT...	C	1.154e^-4	0.919	INTERGENIC
2L	5542308	2L_5542308_SNP [dm3] 2L_5542308_SNP [dm6]	C	T	1.160e^-4	0.919	UTR_5_PRIME Hel25E UPSTREAM Lam & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	19111585	X_19111585_SNP [dm3] X_19217552_SNP [dm6]	C	A	1.164e^-4	0.919	DOWNSTREAM Muc18B INTERGENIC
X	20867586	X_20867586_SNP [dm3] X_20996559_SNP [dm6]	C	T	1.174e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	24570446	3R_24570446_DEL [dm3] 3R_28744724_DEL [dm6]	CT	C	1.176e^-4	0.919	UTR_5_PRIME AstA-R2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3344358	3L_3344358_SNP [dm3] 3L_3344358_SNP [dm6]	A	T	1.180e^-4	0.919	INTRON kst
3R	24028078	3R_24028078_INS [dm3] 3R_28202356_INS [dm6]	T	TTACT	1.182e^-4	0.919	INTRON CG34354
3L	9140047	3L_9140047_SNP [dm3] 3L_9146947_SNP [dm6]	T	A	1.185e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	16394479	2L_16394479_SNP [dm3] 2L_16394479_SNP [dm6]	A	G	1.194e^-4	0.919	INTERGENIC
3L	3356539	3L_3356539_SNP [dm3] 3L_3356539_SNP [dm6]	C	A	1.196e^-4	0.919	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9922327	2R_9922327_SNP [dm3] 2R_14034822_SNP [dm6]	G	A	1.204e^-4	0.919	INTRON mam
X	9200232	X_9200232_SNP [dm3] X_9306199_SNP [dm6]	G	T	1.211e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1489402	3L_1489402_SNP [dm3] 3L_1489402_SNP [dm6]	T	G	1.212e^-4	0.919	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10521277	3L_10521277_SNP [dm3] 3L_10528177_SNP [dm6]	A	T	1.213e^-4	0.919	INTRON A2bp1
X	1107226	X_1107226_SNP [dm3] X_1213193_SNP [dm6]	A	G	1.235e^-4	0.919	UTR_3_PRIME CG11398 DOWNSTREAM CG11398	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	12333194	3L_12333194_SNP [dm3] 3L_12340094_SNP [dm6]	T	C	1.238e^-4	0.919	SYNONYMOUS_CODING CrzR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8404773	3L_8404773_SNP [dm3] 3L_8411673_SNP [dm6]	A	G	1.243e^-4	0.919	UTR_5_PRIME Oseg1 UPSTREAM Exo70 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA
3L	10521267	3L_10521267_SNP [dm3] 3L_10528167_SNP [dm6]	C	A	1.247e^-4	0.919	INTRON A2bp1
2L	255379	2L_255379_SNP [dm3] 2L_255379_SNP [dm6]	G	A	1.252e^-4	0.919	UPSTREAM CG3645 INTRON CG3645
2R	15218647	2R_15218647_SNP [dm3] 2R_19331142_SNP [dm6]	A	G	1.253e^-4	0.919	INTRON Rgk1 & 1 other
3R	22131651	3R_22131651_SNP [dm3] 3R_26305929_SNP [dm6]	T	A	1.267e^-4	0.919	INTERGENIC
X	1108540	X_1108540_SNP [dm3] X_1214507_SNP [dm6]	A	T	1.271e^-4	0.919	NON_SYNONYMOUS_CODING CG11398 DOWNSTREAM CG3638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10807668	2R_10807668_SNP [dm3] 2R_14920163_SNP [dm6]	C	T	1.274e^-4	0.919	INTRON CG10249	TF binding site mE1_TFBS_cnc
3L	8810189	3L_8810189_DEL [dm3] 3L_8817089_DEL [dm6]	GC	A	1.278e^-4	0.919	INTERGENIC
3L	9260038	3L_9260038_SNP [dm3] 3L_9266938_SNP [dm6]	T	A	1.284e^-4	0.919	INTRON GluRIB
3R	16938217	3R_16938217_SNP [dm3] 3R_21112495_SNP [dm6]	A	G	1.291e^-4	0.919	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25562138	3R_25562138_SNP [dm3] 3R_29736416_SNP [dm6]	C	A	1.292e^-4	0.919	SYNONYMOUS_CODING CG7601 UPSTREAM CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
X	6600818	X_6600818_SNP [dm3] X_6706785_SNP [dm6]	A	G	1.296e^-4	0.919	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10521271	3L_10521271_INS [dm3] 3L_10528171_INS [dm6]	A	AAG	1.299e^-4	0.919	INTRON A2bp1
3L	10521262	3L_10521262_DEL [dm3] 3L_10528162_DEL [dm6]	TCCG	A	1.301e^-4	0.919	INTRON A2bp1
3L	4026998	3L_4026998_SNP [dm3] 3L_4026998_SNP [dm6]	A	G	1.306e^-4	0.919	UPSTREAM CG11594 INTRON Gr64a
3L	4026999	3L_4026999_SNP [dm3] 3L_4026999_SNP [dm6]	G	T	1.306e^-4	0.919	UPSTREAM CG11594 INTRON Gr64a
2L	18337011	2L_18337011_SNP [dm3] 2L_18337011_SNP [dm6]	A	G	1.310e^-4	0.919	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	17063327	2R_17063327_SNP [dm3] 2R_21175822_SNP [dm6]	A	T	1.322e^-4	0.919	INTRON Pu
X	19663108	X_19663108_SNP [dm3] X_19769075_SNP [dm6]	T	C	1.332e^-4	0.919	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17500829	2R_17500829_SNP [dm3] 2R_21613324_SNP [dm6]	G	A	1.332e^-4	0.919	UPSTREAM CG15673 DOWNSTREAM CG18870 INTERGENIC
2R	17505220	2R_17505220_SNP [dm3] 2R_21617715_SNP [dm6]	G	A	1.341e^-4	0.919	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17505238	2R_17505238_SNP [dm3] 2R_21617733_SNP [dm6]	C	G	1.341e^-4	0.919	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12604011	3L_12604011_SNP [dm3] 3L_12610911_SNP [dm6]	T	C	1.344e^-4	0.919	INTRON caup	TF binding site mE1_TFBS_HSA
2R	17656552	2R_17656552_SNP [dm3] 2R_21769047_SNP [dm6]	C	T	1.345e^-4	0.919	NON_SYNONYMOUS_CODING CG30395
2L	4353700	2L_4353700_SNP [dm3] 2L_4353700_SNP [dm6]	A	G	1.346e^-4	0.919	NON_SYNONYMOUS_CODING CG15429	TF binding site BDTNP1_TFBS_prd
X	19552344	X_19552344_SNP [dm3] X_19658311_SNP [dm6]	C	T	1.374e^-4	0.919	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2461883	2L_2461883_SNP [dm3] 2L_2461883_SNP [dm6]	C	A	1.377e^-4	0.919	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12604021	3L_12604021_SNP [dm3] 3L_12610921_SNP [dm6]	T	C	1.379e^-4	0.919	INTRON caup	TF binding site mE1_TFBS_HSA
2R	3939954	2R_3939954_SNP [dm3] 2R_8052449_SNP [dm6]	G	A	1.387e^-4	0.919	UTR_3_PRIME CG12769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16466176	2R_16466176_SNP [dm3] 2R_20578671_SNP [dm6]	T	C	1.388e^-4	0.919	INTRON qsm
3R	13684578	3R_13684578_SNP [dm3] 3R_17858856_SNP [dm6]	T	C	1.397e^-4	0.919	INTRON tinc
2R	1714957	2R_1714957_SNP [dm3] 2R_5827452_SNP [dm6]	C	T	1.406e^-4	0.919	INTRON dpr12
2R	1714912	2R_1714912_SNP [dm3] 2R_5827407_SNP [dm6]	T	A	1.407e^-4	0.919	INTRON dpr12
2R	12392094	2R_12392094_INS [dm3] 2R_16504589_INS [dm6]	C	CACCCCCCA	1.408e^-4	0.919	INTRON Sema-2a
2R	6438608	2R_6438608_SNP [dm3] 2R_10551103_SNP [dm6]	G	A	1.410e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13285535	2R_13285535_SNP [dm3] 2R_17398030_SNP [dm6]	G	C	1.427e^-4	0.919	INTRON Sip1	TF binding site BDTNP1_TFBS_twi
2L	3420669	2L_3420669_SNP [dm3] 2L_3420669_SNP [dm6]	T	A	1.429e^-4	0.919	INTRON pgant2
2L	6853954	2L_6853954_SNP [dm3] 2L_6853954_SNP [dm6]	G	T	1.429e^-4	0.919	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15549622	2L_15549622_SNP [dm3] 2L_15549622_SNP [dm6]	C	T	1.436e^-4	0.919	UPSTREAM CR45728 & 1 other INTERGENIC
X	4001563	X_4001563_SNP [dm3] X_4107530_SNP [dm6]	A	T	1.436e^-4	0.919	INTRON cib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1686541	2L_1686541_INS [dm3] 2L_1686541_INS [dm6]	T	TT	1.438e^-4	0.919	INTRON chinmo
2L	5359653	2L_5359653_SNP [dm3] 2L_5359653_SNP [dm6]	G	A	1.446e^-4	0.919	INTRON nompC	TF binding site mE1_TFBS_cad
2L	5346953	2L_5346953_SNP [dm3] 2L_5346953_SNP [dm6]	T	A	1.447e^-4	0.919	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5278905	2R_5278905_SNP [dm3] 2R_9391400_SNP [dm6]	C	A	1.455e^-4	0.919	NON_SYNONYMOUS_CODING l_2_03659
3L	18430295	3L_18430295_SNP [dm3] 3L_18437195_SNP [dm6]	A	C	1.458e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10049424	2L_10049424_SNP [dm3] 2L_10049424_SNP [dm6]	A	G	1.459e^-4	0.919	UPSTREAM CG33301 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6438658	2R_6438658_SNP [dm3] 2R_10551153_SNP [dm6]	C	T	1.466e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12604014	3L_12604014_SNP [dm3] 3L_12610914_SNP [dm6]	A	T	1.488e^-4	0.919	INTRON caup	TF binding site mE1_TFBS_HSA
2L	3608678	2L_3608678_SNP [dm3] 2L_3608678_SNP [dm6]	C	T	1.492e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12604032	3L_12604032_SNP [dm3] 3L_12610932_SNP [dm6]	C	T	1.504e^-4	0.919	INTRON caup
3R	18753251	3R_18753251_SNP [dm3] 3R_22927529_SNP [dm6]	T	G	1.504e^-4	0.919	INTRON klg
3L	10755311	3L_10755311_SNP [dm3] 3L_10762211_SNP [dm6]	A	G	1.508e^-4	0.919	INTERGENIC
3L	9140023	3L_9140023_SNP [dm3] 3L_9146923_SNP [dm6]	A	T	1.519e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	17505256	2R_17505256_SNP [dm3] 2R_21617751_SNP [dm6]	T	C	1.530e^-4	0.919	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10242066	3R_10242066_SNP [dm3] 3R_14416344_SNP [dm6]	C	G	1.537e^-4	0.919	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25854760	3R_25854760_SNP [dm3] 3R_30029038_SNP [dm6]	G	T	1.542e^-4	0.919	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17063297	2R_17063297_DEL [dm3] 2R_21175792_DEL [dm6]	GTAG	G	1.543e^-4	0.919	INTRON Pu
2L	2355459	2L_2355459_SNP [dm3] 2L_2355459_SNP [dm6]	C	A	1.552e^-4	0.919	INTRON CG9967 & 1 other
2R	18463222	2R_18463222_DEL [dm3] 2R_22575717_DEL [dm6]	CTCTACTCACATTGCCAAGA...	C	1.554e^-4	0.919	INTRON dnr1
3L	2706918	3L_2706918_SNP [dm3] 3L_2706918_SNP [dm6]	C	A	1.558e^-4	0.919	INTRON Fife
3L	7639255	3L_7639255_SNP [dm3] 3L_7646155_SNP [dm6]	T	C	1.566e^-4	0.919	INTERGENIC
3L	12603968	3L_12603968_SNP [dm3] 3L_12610868_SNP [dm6]	T	G	1.567e^-4	0.919	INTRON caup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16235336	3L_16235336_SNP [dm3] 3L_16242236_SNP [dm6]	T	A	1.571e^-4	0.919	INTERGENIC
2R	14533516	2R_14533516_SNP [dm3] 2R_18646011_SNP [dm6]	C	T	1.571e^-4	0.919	INTRON SP2637
X	16909988	X_16909988_SNP [dm3] X_17015955_SNP [dm6]	A	C	1.591e^-4	0.919	INTRON CG45002
3L	9140035	3L_9140035_SNP [dm3] 3L_9146935_SNP [dm6]	G	A	1.592e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
X	9820833	X_9820833_SNP [dm3] X_9926800_SNP [dm6]	G	T	1.592e^-4	0.919	INTERGENIC
X	1095301	X_1095301_SNP [dm3] X_1201268_SNP [dm6]	A	G	1.595e^-4	0.919	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16562310	2R_16562310_SNP [dm3] 2R_20674805_SNP [dm6]	C	T	1.598e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17683038	2R_17683038_SNP [dm3] 2R_21795533_SNP [dm6]	G	C	1.599e^-4	0.919	UPSTREAM CG34204 INTERGENIC
2L	5363591	2L_5363591_SNP [dm3] 2L_5363591_SNP [dm6]	C	T	1.608e^-4	0.919	UTR_3_PRIME nompC INTRON nompC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	5749705	X_5749705_SNP [dm3] X_5855672_SNP [dm6]	G	A	1.610e^-4	0.919	INTERGENIC
2L	16394480	2L_16394480_SNP [dm3] 2L_16394480_SNP [dm6]	A	G	1.624e^-4	0.919	INTERGENIC
2L	15239447	2L_15239447_DEL [dm3] 2L_15239447_DEL [dm6]	AA	C	1.626e^-4	0.919	INTRON ZnT35C
X	1095165	X_1095165_SNP [dm3] X_1201132_SNP [dm6]	G	A	1.630e^-4	0.919	NON_SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24203505	3R_24203505_SNP [dm3] 3R_28377783_SNP [dm6]	T	C	1.646e^-4	0.919	INTERGENIC
2R	10807657	2R_10807657_DEL [dm3] 2R_14920152_DEL [dm6]	CAT	C	1.648e^-4	0.919	INTRON CG10249	TF binding site mE1_TFBS_cnc
3L	8374288	3L_8374288_SNP [dm3] 3L_8381188_SNP [dm6]	T	C	1.659e^-4	0.919	INTRON ImpE1
3L	8404876	3L_8404876_SNP [dm3] 3L_8411776_SNP [dm6]	A	T	1.666e^-4	0.919	UTR_5_PRIME Oseg1 UPSTREAM Exo70 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA
2L	8172371	2L_8172371_SNP [dm3] 2L_8172371_SNP [dm6]	T	G	1.667e^-4	0.919	INTRON Piezo
3R	10239598	3R_10239598_SNP [dm3] 3R_14413876_SNP [dm6]	C	A	1.673e^-4	0.919	INTRON cv-c
2R	12409717	2R_12409717_SNP [dm3] 2R_16522212_SNP [dm6]	C	A	1.681e^-4	0.919	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18872490	2R_18872490_SNP [dm3] 2R_22984967_SNP [dm6]	G	A	1.688e^-4	0.919	SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
2L	18341403	2L_18341403_SNP [dm3] 2L_18341403_SNP [dm6]	C	A	1.689e^-4	0.919	INTRON Fas3
2R	10528745	2R_10528745_SNP [dm3] 2R_14641240_SNP [dm6]	C	A	1.691e^-4	0.919	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18159145	3R_18159145_SNP [dm3] 3R_22333423_SNP [dm6]	T	C	1.698e^-4	0.919	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG13862 & 1 other
2L	13517449	2L_13517449_SNP [dm3] 2L_13517449_SNP [dm6]	T	A	1.706e^-4	0.919	INTRON B4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	16112762	3L_16112762_SNP [dm3] 3L_16119662_SNP [dm6]	G	A	1.712e^-4	0.919	INTRON Taf4	TF binding site mE1_TFBS_cad
3L	12661498	3L_12661498_SNP [dm3] 3L_12668398_SNP [dm6]	A	G	1.719e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8747894	3L_8747894_SNP [dm3] 3L_8754794_SNP [dm6]	C	T	1.723e^-4	0.919	INTRON Fhos
X	11832121	X_11832121_SNP [dm3] X_11938088_SNP [dm6]	T	A	1.725e^-4	0.919	INTRON cac	TF binding site mE1_TFBS_inv
3L	3344272	3L_3344272_SNP [dm3] 3L_3344272_SNP [dm6]	A	C	1.733e^-4	0.919	INTRON kst
3L	20098949	3L_20098949_SNP [dm3] 3L_20105849_SNP [dm6]	A	G	1.744e^-4	0.919	UPSTREAM CG14185 DOWNSTREAM CR44679 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18582936	2L_18582936_SNP [dm3] 2L_18582936_SNP [dm6]	A	G	1.744e^-4	0.919	INTRON Pde11	transposable element FlyBase
2R	17063318	2R_17063318_SNP [dm3] 2R_21175813_SNP [dm6]	C	T	1.745e^-4	0.919	INTRON Pu
3R	10352751	3R_10352751_SNP [dm3] 3R_14527029_SNP [dm6]	T	A	1.752e^-4	0.919	INTRON Pde6
X	5972548	X_5972548_SNP [dm3] X_6078515_SNP [dm6]	A	T	1.762e^-4	0.919	UPSTREAM CG4666 DOWNSTREAM CG4660 INTERGENIC
2R	17446260	2R_17446260_SNP [dm3] 2R_21558755_SNP [dm6]	G	T	1.764e^-4	0.919	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5524162	2L_5524162_SNP [dm3] 2L_5524162_SNP [dm6]	T	A	1.766e^-4	0.919	UTR_5_PRIME CG6907 UPSTREAM CG6907 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22131727	3R_22131727_SNP [dm3] 3R_26306005_SNP [dm6]	A	C	1.771e^-4	0.919	INTERGENIC
2L	2206584	2L_2206584_SNP [dm3] 2L_2206584_SNP [dm6]	G	A	1.772e^-4	0.919	UTR_3_PRIME CG33124 UPSTREAM CG31668
3L	13162896	3L_13162896_SNP [dm3] 3L_13169796_SNP [dm6]	C	A	1.776e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8731525	3L_8731525_SNP [dm3] 3L_8738425_SNP [dm6]	A	T	1.779e^-4	0.919	INTRON Prm
2L	18427415	2L_18427415_SNP [dm3] 2L_18427415_SNP [dm6]	C	T	1.787e^-4	0.919	INTERGENIC
3L	9140050	3L_9140050_SNP [dm3] 3L_9146950_SNP [dm6]	A	T	1.792e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	14783903	3R_14783903_SNP [dm3] 3R_18958181_SNP [dm6]	C	T	1.796e^-4	0.919	INTRON CG42613 & 1 other	TF binding site mE1_TFBS_cad
3R	23497692	3R_23497692_SNP [dm3] 3R_27671970_SNP [dm6]	T	C	1.811e^-4	0.919	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16365828	2R_16365828_SNP [dm3] 2R_20478323_SNP [dm6]	G	A	1.814e^-4	0.919	UTR_3_PRIME CG12484
3L	9185195	3L_9185195_SNP [dm3] 3L_9192095_SNP [dm6]	A	T	1.816e^-4	0.919	INTERGENIC
3R	15645295	3R_15645295_SNP [dm3] 3R_19819573_SNP [dm6]	G	A	1.818e^-4	0.919	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5903975	3L_5903975_SNP [dm3] 3L_5910875_SNP [dm6]	T	C	1.823e^-4	0.919	DOWNSTREAM CG13288 INTRON CG13288
3L	10523224	3L_10523224_SNP [dm3] 3L_10530124_SNP [dm6]	T	C	1.834e^-4	0.919	INTRON A2bp1
2L	14996601	2L_14996601_SNP [dm3] 2L_14996601_SNP [dm6]	A	T	1.837e^-4	0.919	INTRON mol	TF binding site BDTNP1_TFBS_dl
2R	15090469	2R_15090469_SNP [dm3] 2R_19202964_SNP [dm6]	C	A	1.853e^-4	0.919	INTRON hppy
3L	4031275	3L_4031275_SNP [dm3] 3L_4031275_SNP [dm6]	G	A	1.856e^-4	0.919	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b UPSTREAM Gr64d & 1 other	TF binding site mE1_TFBS_cad
3L	3969654	3L_3969654_DEL [dm3] 3L_3969654_DEL [dm6]	TGT	T	1.860e^-4	0.919	INTERGENIC
3L	16906748	3L_16906748_SNP [dm3] 3L_16913648_SNP [dm6]	C	T	1.864e^-4	0.919	INTRON Lmpt
2R	13096300	2R_13096300_SNP [dm3] 2R_17208795_SNP [dm6]	A	T	1.868e^-4	0.919	INTERGENIC
3R	25135884	3R_25135884_SNP [dm3] 3R_29310162_SNP [dm6]	A	C	1.878e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2L	8351110	2L_8351110_SNP [dm3] 2L_8351110_SNP [dm6]	C	A	1.881e^-4	0.919	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
3R	5225735	3R_5225735_SNP [dm3] 3R_9400013_SNP [dm6]	T	A	1.884e^-4	0.919	UTR_5_PRIME CG34117 DOWNSTREAM RpL34b & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8110798	2L_8110798_SNP [dm3] 2L_8110798_SNP [dm6]	A	C	1.892e^-4	0.919	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl
X	15125216	X_15125216_SNP [dm3] X_15231183_SNP [dm6]	G	A	1.898e^-4	0.919	INTERGENIC
3R	6134988	3R_6134988_SNP [dm3] 3R_10309266_SNP [dm6]	A	C	1.900e^-4	0.919	NON_SYNONYMOUS_CODING CG6293 DOWNSTREAM CG43143
2L	1953910	2L_1953910_DEL [dm3] 2L_1953910_DEL [dm6]	TACGA	T	1.902e^-4	0.919	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9751657	3L_9751657_SNP [dm3] 3L_9758557_SNP [dm6]	T	A	1.909e^-4	0.919	INTRON CG42268
2R	18619729	2R_18619729_SNP [dm3] 2R_22732224_SNP [dm6]	A	G	1.914e^-4	0.919	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18158895	3R_18158895_SNP [dm3] 3R_22333173_SNP [dm6]	G	A	1.916e^-4	0.919	UTR_3_PRIME CG5391 DOWNSTREAM CG13862
2R	3897537	2R_3897537_SNP [dm3] 2R_8010032_SNP [dm6]	A	G	1.916e^-4	0.919	UTR_3_PRIME CG14762 DOWNSTREAM Odc2	TF binding site mE1_TFBS_cad
3R	8458843	3R_8458843_SNP [dm3] 3R_12633121_SNP [dm6]	C	T	1.924e^-4	0.919	UPSTREAM CG18530 DOWNSTREAM Not10 INTERGENIC
3L	10890728	3L_10890728_SNP [dm3] 3L_10897628_SNP [dm6]	G	A	1.928e^-4	0.919	INTRON Aps
3R	11284973	3R_11284973_SNP [dm3] 3R_15459251_SNP [dm6]	G	A	1.934e^-4	0.919	INTRON AdamTS-A
X	577271	X_577271_SNP [dm3] X_683238_SNP [dm6]	T	C	1.934e^-4	0.919	INTERGENIC
2L	5440039	2L_5440039_DEL [dm3] 2L_5440039_DEL [dm6]	TT	T	1.937e^-4	0.919	UPSTREAM CR31647 INTERGENIC
2L	5246276	2L_5246276_SNP [dm3] 2L_5246276_SNP [dm6]	G	T	1.942e^-4	0.919	INTRON tkv	TF binding site mE1_TFBS_cnc
2L	22175709	2L_22175709_SNP [dm3] 2L_22175709_SNP [dm6]	T	A	1.944e^-4	0.919	INTRON CG3635
3R	22417801	3R_22417801_SNP [dm3] 3R_26592079_SNP [dm6]	G	A	1.952e^-4	0.919	INTRON scrib
2R	19227208	2R_19227208_SNP [dm3] 2R_23339685_SNP [dm6]	T	C	1.953e^-4	0.919	INTERGENIC
X	1108026	X_1108026_SNP [dm3] X_1213993_SNP [dm6]	G	A	1.960e^-4	0.919	SYNONYMOUS_CODING CG11398
2R	5139645	2R_5139645_SNP [dm3] 2R_9252140_SNP [dm6]	G	A	1.960e^-4	0.919	UTR_5_PRIME CG30343 DOWNSTREAM Pkn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5632140	2L_5632140_SNP [dm3] 2L_5632140_SNP [dm6]	A	G	1.973e^-4	0.919	SYNONYMOUS_CODING CG31646 EXON CR44822	TF binding site mE1_TFBS_chinmo
X	18990663	X_18990663_SNP [dm3] X_19096630_SNP [dm6]	C	T	1.982e^-4	0.919	INTERGENIC
3R	26450185	3R_26450185_SNP [dm3] 3R_30624463_SNP [dm6]	T	G	1.985e^-4	0.919	DOWNSTREAM CR44136 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	18060936	2R_18060936_SNP [dm3] 2R_22173431_SNP [dm6]	C	T	1.991e^-4	0.919	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
3R	10575282	3R_10575282_SNP [dm3] 3R_14749560_SNP [dm6]	G	C	2.003e^-4	0.919	START_GAINED jvl UTR_5_PRIME jvl UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	15644953	3R_15644953_SNP [dm3] 3R_19819231_SNP [dm6]	C	A	2.007e^-4	0.919	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7333254	2L_7333254_SNP [dm3] 2L_7333254_SNP [dm6]	T	G	2.016e^-4	0.919	UPSTREAM Wnt6 INTERGENIC
3L	20098925	3L_20098925_SNP [dm3] 3L_20105825_SNP [dm6]	A	T	2.018e^-4	0.919	UPSTREAM CG14185 DOWNSTREAM CR44679 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2782990	3R_2782990_SNP [dm3] 3R_6957268_SNP [dm6]	T	G	2.022e^-4	0.919	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3971795	3R_3971795_SNP [dm3] 3R_8146073_SNP [dm6]	T	A	2.025e^-4	0.919	INTERGENIC
3R	8457126	3R_8457126_SNP [dm3] 3R_12631404_SNP [dm6]	G	A	2.026e^-4	0.919	NON_SYNONYMOUS_CODING Not10 DOWNSTREAM Snx3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16146311	3L_16146311_SNP [dm3] 3L_16153211_SNP [dm6]	C	T	2.026e^-4	0.919	INTRON CG5151
2L	6711258	2L_6711258_SNP [dm3] 2L_6711258_SNP [dm6]	T	C	2.028e^-4	0.919	DOWNSTREAM AkhR INTERGENIC
2L	2238370	2L_2238370_SNP [dm3] 2L_2238370_SNP [dm6]	A	C	2.029e^-4	0.919	SYNONYMOUS_CODING Tengl2 UPSTREAM Tengl3
3R	14034407	3R_14034407_SNP [dm3] 3R_18208685_SNP [dm6]	A	G	2.029e^-4	0.919	UPSTREAM CG44158 INTRON CG7985
X	5972563	X_5972563_SNP [dm3] X_6078530_SNP [dm6]	T	A	2.029e^-4	0.919	UPSTREAM CG4666 DOWNSTREAM CG4660 INTERGENIC
3R	14040411	3R_14040411_SNP [dm3] 3R_18214689_SNP [dm6]	G	A	2.040e^-4	0.919	UTR_3_PRIME CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12603995	3L_12603995_INS [dm3] 3L_12610895_INS [dm6]	A	AGTATATTGCATATTTGGGT...	2.044e^-4	0.919	INTRON caup	TF binding site mE1_TFBS_HSA
X	19537758	X_19537758_SNP [dm3] X_19643725_SNP [dm6]	C	T	2.046e^-4	0.919	UPSTREAM Sec61gamma & 1 other DOWNSTREAM Arp10 INTRON Sec61gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21337229	3R_21337229_SNP [dm3] 3R_25511507_SNP [dm6]	T	A	2.052e^-4	0.919	INTERGENIC
2R	19285034	2R_19285034_SNP [dm3] 2R_23397511_SNP [dm6]	A	G	2.066e^-4	0.919	SYNONYMOUS_CODING CG3520 UPSTREAM CG3530	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12205416	2R_12205416_SNP [dm3] 2R_16317911_SNP [dm6]	C	T	2.066e^-4	0.919	SYNONYMOUS_CODING CG8060
2R	12205431	2R_12205431_SNP [dm3] 2R_16317926_SNP [dm6]	A	G	2.066e^-4	0.919	SYNONYMOUS_CODING CG8060
2R	19227209	2R_19227209_SNP [dm3] 2R_23339686_SNP [dm6]	T	A	2.070e^-4	0.919	INTERGENIC
2R	13310244	2R_13310244_DEL [dm3] 2R_17422739_DEL [dm6]	AA	A	2.070e^-4	0.919	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8110797	2L_8110797_SNP [dm3] 2L_8110797_SNP [dm6]	C	A	2.075e^-4	0.919	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl
3L	2813691	3L_2813691_SNP [dm3] 3L_2813691_SNP [dm6]	T	G	2.077e^-4	0.919	INTRON CG43444
3L	2761158	3L_2761158_SNP [dm3] 3L_2761158_SNP [dm6]	A	G	2.082e^-4	0.919	INTRON Mrtf
2L	5574880	2L_5574880_SNP [dm3] 2L_5574880_SNP [dm6]	G	C	2.087e^-4	0.919	INTERGENIC
2R	10807656	2R_10807656_SNP [dm3] 2R_14920151_SNP [dm6]	T	G	2.090e^-4	0.919	INTRON CG10249	TF binding site mE1_TFBS_cnc
2L	5181501	2L_5181501_SNP [dm3] 2L_5181501_SNP [dm6]	A	G	2.094e^-4	0.919	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16283684	2R_16283684_SNP [dm3] 2R_20396179_SNP [dm6]	G	T	2.098e^-4	0.919	INTERGENIC
2L	15549901	2L_15549901_SNP [dm3] 2L_15549901_SNP [dm6]	G	A	2.109e^-4	0.919	UPSTREAM CG15256 EXON CR45728
3L	8138317	3L_8138317_SNP [dm3] 3L_8145217_SNP [dm6]	T	C	2.128e^-4	0.919	INTRON CG13676
X	14343034	X_14343034_SNP [dm3] X_14449001_SNP [dm6]	G	T	2.139e^-4	0.919	INTRON dpr8
3L	12710828	3L_12710828_SNP [dm3] 3L_12717728_SNP [dm6]	A	T	2.139e^-4	0.919	INTERGENIC
2L	5678133	2L_5678133_SNP [dm3] 2L_5678133_SNP [dm6]	A	G	2.140e^-4	0.919	UPSTREAM CG12511 INTERGENIC
2R	13936543	2R_13936543_SNP [dm3] 2R_18049038_SNP [dm6]	C	A	2.141e^-4	0.919	UTR_3_PRIME CG14495 DOWNSTREAM CG34005 & 1 other
2R	13937148	2R_13937148_SNP [dm3] 2R_18049643_SNP [dm6]	G	T	2.141e^-4	0.919	UTR_5_PRIME CG14495 DOWNSTREAM CG34005 & 1 other
X	4193791	X_4193791_SNP [dm3] X_4299758_SNP [dm6]	G	C	2.141e^-4	0.919	DOWNSTREAM CG12692 INTERGENIC
2L	8960079	2L_8960079_SNP [dm3] 2L_8960079_SNP [dm6]	G	T	2.143e^-4	0.919	UTR_3_PRIME CG9525 DOWNSTREAM CG9525
3L	11060462	3L_11060462_SNP [dm3] 3L_11067362_SNP [dm6]	G	A	2.144e^-4	0.919	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3R	9693088	3R_9693088_SNP [dm3] 3R_13867366_SNP [dm6]	C	T	2.146e^-4	0.919	UTR_3_PRIME E5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14746178	X_14746178_SNP [dm3] X_14852145_SNP [dm6]	A	C	2.149e^-4	0.919	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1950351	2L_1950351_SNP [dm3] 2L_1950351_SNP [dm6]	T	C	2.150e^-4	0.919	UTR_3_PRIME erm
3R	12939722	3R_12939722_SNP [dm3] 3R_17114000_SNP [dm6]	G	C	2.150e^-4	0.919	INTRON cher
3L	12604016	3L_12604016_SNP [dm3] 3L_12610916_SNP [dm6]	G	C	2.151e^-4	0.919	INTRON caup	TF binding site mE1_TFBS_HSA
3R	4109477	3R_4109477_SNP [dm3] 3R_8283755_SNP [dm6]	C	A	2.151e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2L	3056432	2L_3056432_SNP [dm3] 2L_3056432_SNP [dm6]	T	A	2.153e^-4	0.919	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7150165	2R_7150165_SNP [dm3] 2R_11262660_SNP [dm6]	T	C	2.153e^-4	0.919	UPSTREAM Cpr47Ed INTERGENIC
X	20867581	X_20867581_SNP [dm3] X_20996554_SNP [dm6]	T	C	2.155e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2R	17501596	2R_17501596_SNP [dm3] 2R_21614091_SNP [dm6]	A	G	2.163e^-4	0.919	UTR_3_PRIME CG18870 DOWNSTREAM CG18870
3L	9140058	3L_9140058_SNP [dm3] 3L_9146958_SNP [dm6]	C	T	2.164e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	18341790	2R_18341790_SNP [dm3] 2R_22454285_SNP [dm6]	T	C	2.173e^-4	0.919	UPSTREAM CG10384 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18194231	2R_18194231_SNP [dm3] 2R_22306726_SNP [dm6]	G	A	2.179e^-4	0.919	INTRON wdp
X	14341650	X_14341650_SNP [dm3] X_14447617_SNP [dm6]	G	A	2.179e^-4	0.919	INTRON dpr8
3L	1683376	3L_1683376_SNP [dm3] 3L_1683376_SNP [dm6]	A	G	2.180e^-4	0.919	INTRON CG7991
2R	9846894	2R_9846894_SNP [dm3] 2R_13959389_SNP [dm6]	C	T	2.188e^-4	0.919	SYNONYMOUS_CODING Rpn13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	773556	3L_773556_SNP [dm3] 3L_773556_SNP [dm6]	A	C	2.192e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9092655	3L_9092655_DEL [dm3] 3L_9099555_DEL [dm6]	ACTA	A	2.193e^-4	0.919	UTR_3_PRIME bol
3R	14904473	3R_14904473_SNP [dm3] 3R_19078751_SNP [dm6]	G	A	2.199e^-4	0.919	INTRON cdi
3R	1283182	3R_1283182_SNP [dm3] 3R_5457460_SNP [dm6]	C	T	2.203e^-4	0.919	UTR_3_PRIME CG14669
2L	5440841	2L_5440841_SNP [dm3] 2L_5440841_SNP [dm6]	A	G	2.203e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17534949	2R_17534949_SNP [dm3] 2R_21647444_SNP [dm6]	T	C	2.214e^-4	0.919	INTRON CG10082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13977942	3R_13977942_SNP [dm3] 3R_18152220_SNP [dm6]	T	C	2.229e^-4	0.919	SYNONYMOUS_CODING CG14316
2R	13934704	2R_13934704_SNP [dm3] 2R_18047199_SNP [dm6]	C	A	2.233e^-4	0.919	SYNONYMOUS_CODING CG5767 UPSTREAM CG34005	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15090565	2R_15090565_SNP [dm3] 2R_19203060_SNP [dm6]	T	A	2.250e^-4	0.919	INTRON hppy
3L	9508645	3L_9508645_SNP [dm3] 3L_9515545_SNP [dm6]	C	A	2.255e^-4	0.919	INTRON CG33700
2R	12372220	2R_12372220_SNP [dm3] 2R_16484715_SNP [dm6]	G	A	2.256e^-4	0.919	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8918042	2R_8918042_SNP [dm3] 2R_13030537_SNP [dm6]	T	G	2.262e^-4	0.919	INTERGENIC
3R	14233736	3R_14233736_SNP [dm3] 3R_18408014_SNP [dm6]	G	A	2.263e^-4	0.919	SYNONYMOUS_CODING CG31122	TF binding site BDTNP1_TFBS_da
3R	9657417	3R_9657417_SNP [dm3] 3R_13831695_SNP [dm6]	A	C	2.268e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14745737	X_14745737_SNP [dm3] X_14851704_SNP [dm6]	C	T	2.269e^-4	0.919	SYNONYMOUS_CODING CG9521 INTRON Flo2
3L	17363419	3L_17363419_SNP [dm3] 3L_17370319_SNP [dm6]	T	G	2.272e^-4	0.919	SYNONYMOUS_CODING Cad74A
2R	13772428	2R_13772428_SNP [dm3] 2R_17884923_SNP [dm6]	C	T	2.276e^-4	0.919	INTRON Elk
2R	12205328	2R_12205328_SNP [dm3] 2R_16317823_SNP [dm6]	A	C	2.281e^-4	0.919	NON_SYNONYMOUS_CODING CG8060
2R	6603723	2R_6603723_SNP [dm3] 2R_10716218_SNP [dm6]	C	A	2.289e^-4	0.919	SYNONYMOUS_CODING stan
3L	8731535	3L_8731535_SNP [dm3] 3L_8738435_SNP [dm6]	C	T	2.297e^-4	0.919	INTRON Prm
2R	14555969	2R_14555969_SNP [dm3] 2R_18668464_SNP [dm6]	C	T	2.301e^-4	0.919	INTRON edl	TF binding site mE1_TFBS_sens
X	20007761	X_20007761_SNP [dm3] X_20113728_SNP [dm6]	T	A	2.304e^-4	0.919	INTERGENIC
2L	11704200	2L_11704200_SNP [dm3] 2L_11704200_SNP [dm6]	G	C	2.304e^-4	0.919	INTERGENIC
3L	9513427	3L_9513427_SNP [dm3] 3L_9520327_SNP [dm6]	A	G	2.308e^-4	0.919	INTRON CG33700
3L	1072354	3L_1072354_INS [dm3] 3L_1072354_INS [dm6]	A	ATA	2.313e^-4	0.919	INTRON bab1
X	8184377	X_8184377_SNP [dm3] X_8290344_SNP [dm6]	C	T	2.336e^-4	0.919	INTRON nAChRalpha3
2R	13939792	2R_13939792_SNP [dm3] 2R_18052287_SNP [dm6]	A	G	2.343e^-4	0.919	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
3L	16872502	3L_16872502_DEL [dm3] 3L_16879402_DEL [dm6]	AT	A	2.345e^-4	0.919	DOWNSTREAM CG32170 INTRON Lmpt
2R	9033936	2R_9033936_SNP [dm3] 2R_13146431_SNP [dm6]	G	T	2.346e^-4	0.919	UTR_3_PRIME Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad
2L	5516581	2L_5516581_SNP [dm3] 2L_5516581_SNP [dm6]	A	G	2.347e^-4	0.919	INTERGENIC
3R	9682700	3R_9682700_SNP [dm3] 3R_13856978_SNP [dm6]	C	T	2.348e^-4	0.919	INTERGENIC
X	20007795	X_20007795_DEL [dm3] X_20113762_DEL [dm6]	GACTTCATTCCA...	G	2.354e^-4	0.919	INTERGENIC
2L	5181487	2L_5181487_SNP [dm3] 2L_5181487_SNP [dm6]	A	C	2.376e^-4	0.919	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA
2L	5181537	2L_5181537_SNP [dm3] 2L_5181537_SNP [dm6]	T	A	2.376e^-4	0.919	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6244597	3L_6244597_SNP [dm3] 3L_6251497_SNP [dm6]	T	C	2.383e^-4	0.919	SPLICE_SITE_REGION Best2 SYNONYMOUS_CODING Best2
3L	9189758	3L_9189758_SNP [dm3] 3L_9196658_SNP [dm6]	A	G	2.385e^-4	0.919	INTERGENIC
3L	6105893	3L_6105893_SNP [dm3] 3L_6112793_SNP [dm6]	G	T	2.389e^-4	0.919	INTRON Ets65A
2R	3645316	2R_3645316_SNP [dm3] 2R_7757811_SNP [dm6]	A	T	2.391e^-4	0.919	INTRON CG30497 & 1 other
2L	5658057	2L_5658057_SNP [dm3] 2L_5658057_SNP [dm6]	G	A	2.394e^-4	0.919	INTRON CG31646	TF binding site BDTNP1_TFBS_dl
X	10478193	X_10478193_SNP [dm3] X_10584160_SNP [dm6]	G	A	2.400e^-4	0.919	INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	6601675	X_6601675_SNP [dm3] X_6707642_SNP [dm6]	G	A	2.401e^-4	0.919	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11079343	2L_11079343_SNP [dm3] 2L_11079343_SNP [dm6]	A	C	2.406e^-4	0.919	INTRON AstC
X	9200094	X_9200094_DEL [dm3] X_9306061_DEL [dm6]	CT	G	2.416e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12142550	3L_12142550_SNP [dm3] 3L_12149450_SNP [dm6]	C	A	2.417e^-4	0.919	SYNONYMOUS_CODING eap INTRON Nrx-IV	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7442226	X_7442226_MNP [dm3] X_7548193_MNP [dm6]	CCGTGCC	AATAATA	2.430e^-4	0.919	UPSTREAM CG32719 INTERGENIC
3R	10287540	3R_10287540_SNP [dm3] 3R_14461818_SNP [dm6]	A	T	2.441e^-4	0.919	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2968687	X_2968687_SNP [dm3] X_3074654_SNP [dm6]	G	A	2.443e^-4	0.919	INTRON kirre
X	5974198	X_5974198_SNP [dm3] X_6080165_SNP [dm6]	A	C	2.461e^-4	0.919	INTRON CG4660	TF binding site BDTNP1_TFBS_dl
3L	9540065	3L_9540065_SNP [dm3] 3L_9546965_SNP [dm6]	C	G	2.466e^-4	0.919	UPSTREAM CG42673 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	22043228	X_22043228_SNP [dm3] X_22641392_SNP [dm6]	A	G	2.467e^-4	0.919	INTERGENIC	transposable element FlyBase
2L	6850371	2L_6850371_SNP [dm3] 2L_6850371_SNP [dm6]	T	A	2.467e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24028442	3R_24028442_SNP [dm3] 3R_28202720_SNP [dm6]	C	A	2.467e^-4	0.919	INTRON CG34354
2L	5010704	2L_5010704_SNP [dm3] 2L_5010704_SNP [dm6]	C	A	2.478e^-4	0.919	UPSTREAM Rtnl1 & 1 other INTRON CG31917 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3R	23032035	3R_23032035_SNP [dm3] 3R_27206313_SNP [dm6]	T	C	2.481e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12604045	3L_12604045_SNP [dm3] 3L_12610945_SNP [dm6]	G	C	2.488e^-4	0.919	INTRON caup
X	5972554	X_5972554_SNP [dm3] X_6078521_SNP [dm6]	T	C	2.488e^-4	0.919	UPSTREAM CG4666 DOWNSTREAM CG4660 INTERGENIC
2R	13327008	2R_13327008_SNP [dm3] 2R_17439503_SNP [dm6]	G	C	2.497e^-4	0.919	UPSTREAM CG18467 INTRON EDTP
3R	13059352	3R_13059352_SNP [dm3] 3R_17233630_SNP [dm6]	T	A	2.500e^-4	0.919	INTRON beat-IIb
3L	12826176	3L_12826176_SNP [dm3] 3L_12833076_SNP [dm6]	T	G	2.501e^-4	0.919	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4193122	X_4193122_DEL [dm3] X_4299089_DEL [dm6]	CGTTT	C	2.501e^-4	0.919	INTERGENIC
3L	9506720	3L_9506720_SNP [dm3] 3L_9513620_SNP [dm6]	A	T	2.503e^-4	0.919	UPSTREAM CG33703 & 1 other DOWNSTREAM CR33701 & 1 other INTERGENIC
2R	15150665	2R_15150665_SNP [dm3] 2R_19263160_SNP [dm6]	C	T	2.510e^-4	0.919	DOWNSTREAM CG7229 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16283659	2R_16283659_SNP [dm3] 2R_20396154_SNP [dm6]	G	T	2.514e^-4	0.919	INTERGENIC
X	475513	X_475513_SNP [dm3] X_581480_SNP [dm6]	A	C	2.516e^-4	0.919	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5163617	2L_5163617_SNP [dm3] 2L_5163617_SNP [dm6]	A	C	2.519e^-4	0.919	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	8172334	2L_8172334_SNP [dm3] 2L_8172334_SNP [dm6]	C	T	2.528e^-4	0.919	INTRON Piezo
2L	5445324	2L_5445324_SNP [dm3] 2L_5445324_SNP [dm6]	A	C	2.537e^-4	0.919	INTERGENIC
X	8184385	X_8184385_SNP [dm3] X_8290352_SNP [dm6]	G	T	2.546e^-4	0.919	INTRON nAChRalpha3
3L	9203020	3L_9203020_SNP [dm3] 3L_9209920_SNP [dm6]	C	T	2.550e^-4	0.919	INTERGENIC
2R	12167257	2R_12167257_SNP [dm3] 2R_16279752_SNP [dm6]	T	C	2.551e^-4	0.919	UPSTREAM CG15704 INTERGENIC
2R	15218545	2R_15218545_SNP [dm3] 2R_19331040_SNP [dm6]	G	T	2.556e^-4	0.919	NON_SYNONYMOUS_CODING CG34045 INTRON Rgk1
2R	9820972	2R_9820972_SNP [dm3] 2R_13933467_SNP [dm6]	T	G	2.564e^-4	0.919	INTRON shot	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	6601214	X_6601214_SNP [dm3] X_6707181_SNP [dm6]	C	A	2.571e^-4	0.919	INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7751811	X_7751811_SNP [dm3] X_7857778_SNP [dm6]	T	A	2.576e^-4	0.919	UPSTREAM CG1409 INTERGENIC
3R	10178867	3R_10178867_SNP [dm3] 3R_14353145_SNP [dm6]	A	T	2.580e^-4	0.919	INTRON NK7.1
2R	13310250	2R_13310250_SNP [dm3] 2R_17422745_SNP [dm6]	T	A	2.582e^-4	0.919	INTRON l_2_k01209	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12140859	2L_12140859_SNP [dm3] 2L_12140859_SNP [dm6]	A	C	2.588e^-4	0.919	DOWNSTREAM Gr33a INTERGENIC
X	6438325	X_6438325_SNP [dm3] X_6544292_SNP [dm6]	G	T	2.588e^-4	0.919	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
2R	13306537	2R_13306537_SNP [dm3] 2R_17419032_SNP [dm6]	A	T	2.589e^-4	0.919	INTRON cnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	18858649	2R_18858649_SNP [dm3] 2R_22971126_SNP [dm6]	T	C	2.590e^-4	0.919	INTERGENIC
3L	1489359	3L_1489359_SNP [dm3] 3L_1489359_SNP [dm6]	T	C	2.590e^-4	0.919	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20146822	2R_20146822_SNP [dm3] 2R_24259299_SNP [dm6]	C	T	2.590e^-4	0.919	INTRON CG3376
3R	3822520	3R_3822520_SNP [dm3] 3R_7996798_SNP [dm6]	T	C	2.596e^-4	0.919	UPSTREAM CG2781 INTERGENIC
3R	10178796	3R_10178796_SNP [dm3] 3R_14353074_SNP [dm6]	C	T	2.608e^-4	0.919	INTRON NK7.1
3R	8457132	3R_8457132_SNP [dm3] 3R_12631410_SNP [dm6]	T	A	2.609e^-4	0.919	NON_SYNONYMOUS_CODING Not10 DOWNSTREAM Snx3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12661486	3L_12661486_SNP [dm3] 3L_12668386_SNP [dm6]	T	G	2.615e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3794658	3L_3794658_SNP [dm3] 3L_3794658_SNP [dm6]	C	G	2.615e^-4	0.919	UTR_5_PRIME CG32264 INTRON CG32264
X	14747743	X_14747743_SNP [dm3] X_14853710_SNP [dm6]	A	G	2.625e^-4	0.919	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	2585040	X_2585040_SNP [dm3] X_2691007_SNP [dm6]	A	G	2.634e^-4	0.919	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
X	7917548	X_7917548_SNP [dm3] X_8023515_SNP [dm6]	G	T	2.634e^-4	0.919	INTRON Tbh
3L	13161634	3L_13161634_SNP [dm3] 3L_13168534_SNP [dm6]	T	C	2.636e^-4	0.919	INTERGENIC
3L	6758746	3L_6758746_SNP [dm3] 3L_6765646_SNP [dm6]	G	T	2.646e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3L	9510881	3L_9510881_SNP [dm3] 3L_9517781_SNP [dm6]	A	T	2.658e^-4	0.919	INTRON CG33700
3L	9856865	3L_9856865_SNP [dm3] 3L_9863765_SNP [dm6]	G	A	2.666e^-4	0.919	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9507016	3L_9507016_DEL [dm3] 3L_9513916_DEL [dm6]	CA	T	2.667e^-4	0.919	UPSTREAM CG33702 DOWNSTREAM CG33700 EXON CR33701
X	9199927	X_9199927_SNP [dm3] X_9305894_SNP [dm6]	A	G	2.670e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12603978	3L_12603978_SNP [dm3] 3L_12610878_SNP [dm6]	G	T	2.676e^-4	0.919	INTRON caup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5126804	3R_5126804_DEL [dm3] 3R_9301082_DEL [dm6]	ACATTACATT	A	2.694e^-4	0.919	INTRON CG8861
3R	13747042	3R_13747042_SNP [dm3] 3R_17921320_SNP [dm6]	C	A	2.709e^-4	0.919	UTR_5_PRIME cpo
3L	12826237	3L_12826237_SNP [dm3] 3L_12833137_SNP [dm6]	T	G	2.711e^-4	0.919	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25491116	3R_25491116_SNP [dm3] 3R_29665394_SNP [dm6]	G	A	2.713e^-4	0.919	NON_SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_sens
3R	22105029	3R_22105029_SNP [dm3] 3R_26279307_SNP [dm6]	G	T	2.720e^-4	0.919	INTERGENIC
2R	6203064	2R_6203064_INS [dm3] 2R_10315559_INS [dm6]	T	TC	2.725e^-4	0.919	INTRON Ndg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	13763942	2R_13763942_SNP [dm3] 2R_17876437_SNP [dm6]	A	C	2.726e^-4	0.919	INTRON Elk
2R	18002587	2R_18002587_SNP [dm3] 2R_22115082_SNP [dm6]	A	G	2.739e^-4	0.919	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
3L	6758609	3L_6758609_DEL [dm3] 3L_6765509_DEL [dm6]	TCATGGG	AATAA	2.759e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5126803	3R_5126803_INS [dm3] 3R_9301081_INS [dm6]	T	TGTAATGTA	2.768e^-4	0.919	INTRON CG8861
2R	18707630	2R_18707630_SNP [dm3] 2R_22820125_SNP [dm6]	A	C	2.770e^-4	0.919	INTRON CG30271	TF binding site mE1_TFBS_chinmo
2R	18391196	2R_18391196_SNP [dm3] 2R_22503691_SNP [dm6]	G	A	2.770e^-4	0.919	INTRON px
3R	14907557	3R_14907557_SNP [dm3] 3R_19081835_SNP [dm6]	G	A	2.771e^-4	0.919	INTRON cdi
2R	6544138	2R_6544138_SNP [dm3] 2R_10656633_SNP [dm6]	T	A	2.776e^-4	0.919	DOWNSTREAM CR44452 INTERGENIC
3L	1583875	3L_1583875_SNP [dm3] 3L_1583875_SNP [dm6]	T	C	2.779e^-4	0.919	INTRON CG13917	TF binding site mE1_TFBS_HSA
3R	7131977	3R_7131977_MNP [dm3] 3R_11306255_MNP [dm6]	GGGT	ACCC	2.783e^-4	0.919	UPSTREAM CR31386 INTERGENIC
3L	19359921	3L_19359921_SNP [dm3] 3L_19366821_SNP [dm6]	T	A	2.784e^-4	0.919	INTRON CG32206
2L	5010850	2L_5010850_SNP [dm3] 2L_5010850_SNP [dm6]	C	T	2.784e^-4	0.919	UPSTREAM CG3887 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
3R	11218315	3R_11218315_SNP [dm3] 3R_15392593_SNP [dm6]	C	T	2.793e^-4	0.919	SYNONYMOUS_CODING Rbp UTR_3_PRIME Rbp	TF binding site mE1_TFBS_cad
3L	8404863	3L_8404863_INS [dm3] 3L_8411763_INS [dm6]	A	AA	2.797e^-4	0.919	UTR_5_PRIME Oseg1 UPSTREAM Exo70 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA
3L	7585127	3L_7585127_SNP [dm3] 3L_7592027_SNP [dm6]	A	G	2.815e^-4	0.919	INTERGENIC
X	16429001	X_16429001_SNP [dm3] X_16534968_SNP [dm6]	A	C	2.819e^-4	0.919	INTERGENIC
2L	7016909	2L_7016909_SNP [dm3] 2L_7016909_SNP [dm6]	C	G	2.820e^-4	0.919	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
3R	25610363	3R_25610363_SNP [dm3] 3R_29784641_SNP [dm6]	G	T	2.823e^-4	0.919	INTRON kay
X	14745809	X_14745809_SNP [dm3] X_14851776_SNP [dm6]	T	C	2.824e^-4	0.919	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_sens
2R	15151069	2R_15151069_SNP [dm3] 2R_19263564_SNP [dm6]	A	T	2.825e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	4022047	3R_4022047_SNP [dm3] 3R_8196325_SNP [dm6]	C	T	2.834e^-4	0.919	DOWNSTREAM CR43302 INTERGENIC
2L	16795180	2L_16795180_SNP [dm3] 2L_16795180_SNP [dm6]	T	C	2.840e^-4	0.919	SYNONYMOUS_CODING Ugt36Ba
2R	15323863	2R_15323863_SNP [dm3] 2R_19436358_SNP [dm6]	C	T	2.841e^-4	0.919	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25134499	3R_25134499_SNP [dm3] 3R_29308777_SNP [dm6]	T	C	2.844e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10843346	X_10843346_SNP [dm3] X_10949313_SNP [dm6]	T	C	2.850e^-4	0.919	DOWNSTREAM Rab9Fa INTRON Myo10A
2L	8166521	2L_8166521_SNP [dm3] 2L_8166521_SNP [dm6]	A	T	2.853e^-4	0.919	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	13962084	3R_13962084_SNP [dm3] 3R_18136362_SNP [dm6]	A	G	2.859e^-4	0.919	DOWNSTREAM sr INTERGENIC
2L	2185442	2L_2185442_SNP [dm3] 2L_2185442_SNP [dm6]	T	G	2.869e^-4	0.919	EXON CR43751	regulatory region REDfly_CRMs
3L	6791892	3L_6791892_SNP [dm3] 3L_6798792_SNP [dm6]	G	A	2.888e^-4	0.919	INTERGENIC
3R	24820422	3R_24820422_SNP [dm3] 3R_28994700_SNP [dm6]	T	C	2.900e^-4	0.919	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3817651	3R_3817651_INS [dm3] 3R_7991929_INS [dm6]	G	GTTG	2.906e^-4	0.919	INTRON CG2781
X	1095064	X_1095064_SNP [dm3] X_1201031_SNP [dm6]	A	G	2.907e^-4	0.919	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_sens
2R	18462888	2R_18462888_SNP [dm3] 2R_22575383_SNP [dm6]	C	T	2.909e^-4	0.919	INTRON dnr1
2L	4824866	2L_4824866_SNP [dm3] 2L_4824866_SNP [dm6]	C	T	2.911e^-4	0.919	INTRON CG15628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4098160	3R_4098160_SNP [dm3] 3R_8272438_SNP [dm6]	C	A	2.917e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs
3L	9140026	3L_9140026_SNP [dm3] 3L_9146926_SNP [dm6]	T	A	2.926e^-4	0.919	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	2229608	2L_2229608_SNP [dm3] 2L_2229608_SNP [dm6]	T	G	2.939e^-4	0.919	INTRON rti	TF binding site mE1_TFBS_HSA
3L	4531455	3L_4531455_SNP [dm3] 3L_4531455_SNP [dm6]	C	A	2.948e^-4	0.919	START_GAINED Tie UTR_5_PRIME Tie
3L	1270164	3L_1270164_SNP [dm3] 3L_1270164_SNP [dm6]	C	A	2.952e^-4	0.919	INTRON CG9134
2R	20140857	2R_20140857_SNP [dm3] 2R_24253334_SNP [dm6]	T	G	2.953e^-4	0.919	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18889448	2R_18889448_SNP [dm3] 2R_23001925_SNP [dm6]	C	G	2.967e^-4	0.919	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12361172	3R_12361172_SNP [dm3] 3R_16535450_SNP [dm6]	C	G	2.970e^-4	0.919	INTRON CG42342
2R	13307475	2R_13307475_SNP [dm3] 2R_17419970_SNP [dm6]	T	A	2.972e^-4	0.919	UTR_5_PRIME cnk UPSTREAM l_2_k01209 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9004361	3L_9004361_SNP [dm3] 3L_9011261_SNP [dm6]	G	A	2.976e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14746250	X_14746250_SNP [dm3] X_14852217_SNP [dm6]	T	C	2.982e^-4	0.919	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3910048	X_3910048_SNP [dm3] X_4016015_SNP [dm6]	G	A	2.991e^-4	0.919	INTERGENIC
X	13920734	X_13920734_SNP [dm3] X_14026701_SNP [dm6]	A	G	2.991e^-4	0.919	INTERGENIC
3R	10143692	3R_10143692_SNP [dm3] 3R_14317970_SNP [dm6]	T	C	2.994e^-4	0.919	NON_SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18889419	2R_18889419_SNP [dm3] 2R_23001896_SNP [dm6]	G	A	2.997e^-4	0.919	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	19537760	X_19537760_SNP [dm3] X_19643727_SNP [dm6]	T	A	3.002e^-4	0.919	UPSTREAM Sec61gamma & 1 other DOWNSTREAM Arp10 INTRON Sec61gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8401881	3L_8401881_SNP [dm3] 3L_8408781_SNP [dm6]	G	A	3.003e^-4	0.919	SYNONYMOUS_CODING Oseg1
2L	5358233	2L_5358233_SNP [dm3] 2L_5358233_SNP [dm6]	C	T	3.017e^-4	0.919	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19445321	2R_19445321_SNP [dm3] 2R_23557798_SNP [dm6]	G	A	3.028e^-4	0.919	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9633824	2L_9633824_SNP [dm3] 2L_9633824_SNP [dm6]	C	G	3.032e^-4	0.919	UPSTREAM Apoltp INTERGENIC	TF binding site mE1_TFBS_inv
2R	6438599	2R_6438599_SNP [dm3] 2R_10551094_SNP [dm6]	G	T	3.038e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13500435	2L_13500435_SNP [dm3] 2L_13500435_SNP [dm6]	A	T	3.057e^-4	0.919	DOWNSTREAM B4 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19481216	2L_19481216_SNP [dm3] 2L_19481216_SNP [dm6]	T	G	3.062e^-4	0.919	INTERGENIC
2L	8960075	2L_8960075_SNP [dm3] 2L_8960075_SNP [dm6]	A	G	3.068e^-4	0.919	UTR_3_PRIME CG9525 DOWNSTREAM CG9525
2L	8036927	2L_8036927_SNP [dm3] 2L_8036927_SNP [dm6]	T	C	3.071e^-4	0.919	INTRON CG7367 & 1 other
2L	16394508	2L_16394508_DEL [dm3] 2L_16394508_DEL [dm6]	GG	G	3.078e^-4	0.919	INTERGENIC
3L	2707218	3L_2707218_SNP [dm3] 3L_2707218_SNP [dm6]	G	A	3.079e^-4	0.919	INTRON Fife
3L	19856922	3L_19856922_SNP [dm3] 3L_19863822_SNP [dm6]	A	T	3.086e^-4	0.919	INTERGENIC
2R	13307525	2R_13307525_SNP [dm3] 2R_17420020_SNP [dm6]	G	T	3.088e^-4	0.919	UPSTREAM l_2_k01209 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6203067	2R_6203067_SNP [dm3] 2R_10315562_SNP [dm6]	A	T	3.089e^-4	0.919	INTRON Ndg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7031321	3L_7031321_SNP [dm3] 3L_7038221_SNP [dm6]	T	G	3.092e^-4	0.919	INTRON Mp
3L	1682477	3L_1682477_SNP [dm3] 3L_1682477_SNP [dm6]	G	T	3.097e^-4	0.919	INTRON CG7991
3L	17358034	3L_17358034_SNP [dm3] 3L_17364934_SNP [dm6]	T	C	3.099e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D
2R	15695982	2R_15695982_SNP [dm3] 2R_19808477_SNP [dm6]	C	A	3.116e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15698662	2R_15698662_SNP [dm3] 2R_19811157_SNP [dm6]	C	T	3.116e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	20140854	2R_20140854_SNP [dm3] 2R_24253331_SNP [dm6]	C	T	3.124e^-4	0.919	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3526863	X_3526863_SNP [dm3] X_3632830_SNP [dm6]	T	A	3.133e^-4	0.919	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17232735	2R_17232735_DEL [dm3] 2R_21345230_DEL [dm6]	GGAG	G	3.138e^-4	0.919	CODON_DELETION CG15666
2L	8172369	2L_8172369_SNP [dm3] 2L_8172369_SNP [dm6]	C	T	3.141e^-4	0.919	INTRON Piezo
X	1094848	X_1094848_SNP [dm3] X_1200815_SNP [dm6]	C	T	3.141e^-4	0.919	NON_SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_sens
3L	12603974	3L_12603974_SNP [dm3] 3L_12610874_SNP [dm6]	G	A	3.146e^-4	0.919	INTRON caup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22105109	3R_22105109_SNP [dm3] 3R_26279387_SNP [dm6]	A	G	3.150e^-4	0.919	INTERGENIC
3L	6915335	3L_6915335_SNP [dm3] 3L_6922235_SNP [dm6]	A	C	3.155e^-4	0.919	INTERGENIC
X	7751880	X_7751880_SNP [dm3] X_7857847_SNP [dm6]	C	T	3.157e^-4	0.919	UPSTREAM CG1409 INTERGENIC
3L	5570163	3L_5570163_SNP [dm3] 3L_5577063_SNP [dm6]	A	G	3.170e^-4	0.919	INTRON Msr-110
3R	11271870	3R_11271870_SNP [dm3] 3R_15446148_SNP [dm6]	T	C	3.174e^-4	0.919	INTRON AdamTS-A
3R	9999471	3R_9999471_SNP [dm3] 3R_14173749_SNP [dm6]	G	T	3.175e^-4	0.919	UTR_3_PRIME Dop1R1
X	14748666	X_14748666_SNP [dm3] X_14854633_SNP [dm6]	T	C	3.195e^-4	0.919	SYNONYMOUS_CODING CG9519 INTRON Flo2
X	20868692	X_20868692_INS [dm3] X_20997665_INS [dm6]	A	AAAGA	3.202e^-4	0.919	INTERGENIC
2R	16030758	2R_16030758_SNP [dm3] 2R_20143253_SNP [dm6]	G	A	3.204e^-4	0.919	INTERGENIC
3L	13887418	3L_13887418_SNP [dm3] 3L_13894318_SNP [dm6]	G	T	3.211e^-4	0.919	INTRON dysc
2L	10695871	2L_10695871_SNP [dm3] 2L_10695871_SNP [dm6]	G	C	3.215e^-4	0.919	SYNONYMOUS_CODING CG7300 EXON CR44181	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12141502	2L_12141502_SNP [dm3] 2L_12141502_SNP [dm6]	G	C	3.215e^-4	0.919	INTERGENIC
2R	18889441	2R_18889441_SNP [dm3] 2R_23001918_SNP [dm6]	T	C	3.217e^-4	0.919	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9693847	3R_9693847_SNP [dm3] 3R_13868125_SNP [dm6]	C	T	3.221e^-4	0.919	INTRON E5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4182147	2R_4182147_SNP [dm3] 2R_8294642_SNP [dm6]	C	T	3.234e^-4	0.919	INTERGENIC
2L	5440882	2L_5440882_SNP [dm3] 2L_5440882_SNP [dm6]	T	C	3.250e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	15090575	2R_15090575_DEL [dm3] 2R_19203070_DEL [dm6]	AGCGTATAA	A	3.251e^-4	0.919	INTRON hppy
X	16719390	X_16719390_SNP [dm3] X_16825357_SNP [dm6]	C	T	3.253e^-4	0.919	SYNONYMOUS_CODING CG4829
3L	11853204	3L_11853204_SNP [dm3] 3L_11860104_SNP [dm6]	A	C	3.257e^-4	0.919	INTRON CG44837
2R	18496140	2R_18496140_SNP [dm3] 2R_22608635_SNP [dm6]	T	C	3.259e^-4	0.919	DOWNSTREAM snoRNA:Or-aca1 & 2 others INTRON Vps20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5183458	2L_5183458_SNP [dm3] 2L_5183458_SNP [dm6]	A	C	3.260e^-4	0.919	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	18002591	2R_18002591_SNP [dm3] 2R_22115086_SNP [dm6]	G	A	3.264e^-4	0.919	NON_SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
X	5217645	X_5217645_SNP [dm3] X_5323612_SNP [dm6]	G	A	3.265e^-4	0.919	UPSTREAM Rnp4F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7237589	X_7237589_SNP [dm3] X_7343556_SNP [dm6]	C	T	3.265e^-4	0.919	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	21861360	X_21861360_SNP [dm3] X_22459524_SNP [dm6]	T	A	3.266e^-4	0.919	INTRON CG14619	transposable element FlyBase
3L	12630144	3L_12630144_SNP [dm3] 3L_12637044_SNP [dm6]	A	G	3.275e^-4	0.919	INTRON CR32111
2R	18492874	2R_18492874_SNP [dm3] 2R_22605369_SNP [dm6]	G	C	3.282e^-4	0.919	SYNONYMOUS_CODING CG4294 UPSTREAM RpS16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25146940	3R_25146940_SNP [dm3] 3R_29321218_SNP [dm6]	T	A	3.288e^-4	0.919	INTERGENIC
3L	13307905	3L_13307905_SNP [dm3] 3L_13314805_SNP [dm6]	A	T	3.289e^-4	0.919	INTERGENIC
3L	17238530	3L_17238530_SNP [dm3] 3L_17245430_SNP [dm6]	C	G	3.292e^-4	0.919	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
2L	16631610	2L_16631610_SNP [dm3] 2L_16631610_SNP [dm6]	C	G	3.296e^-4	0.919	INTRON CG42389
X	14748377	X_14748377_SNP [dm3] X_14854344_SNP [dm6]	T	C	3.297e^-4	0.919	UTR_3_PRIME CG9519 INTRON Flo2
3R	6717323	3R_6717323_SNP [dm3] 3R_10891601_SNP [dm6]	T	C	3.304e^-4	0.919	NON_SYNONYMOUS_CODING CG6621 INTRON Leash	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6088705	3L_6088705_SNP [dm3] 3L_6095605_SNP [dm6]	A	G	3.304e^-4	0.919	UPSTREAM CG10467 INTRON loj
2L	5523004	2L_5523004_SNP [dm3] 2L_5523004_SNP [dm6]	A	C	3.305e^-4	0.919	INTRON CG7371	TF binding site mE1_TFBS_sens
3R	10575290	3R_10575290_SNP [dm3] 3R_14749568_SNP [dm6]	G	A	3.309e^-4	0.919	UTR_5_PRIME jvl UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	12138876	X_12138876_SNP [dm3] X_12244843_SNP [dm6]	T	A	3.311e^-4	0.919	INTRON Ten-a
X	4456726	X_4456726_SNP [dm3] X_4562693_SNP [dm6]	T	C	3.316e^-4	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11746376	2L_11746376_SNP [dm3] 2L_11746376_SNP [dm6]	G	T	3.328e^-4	0.919	INTERGENIC
2L	3536194	2L_3536194_SNP [dm3] 2L_3536194_SNP [dm6]	G	C	3.340e^-4	0.919	INTERGENIC
2R	16856404	2R_16856404_SNP [dm3] 2R_20968899_SNP [dm6]	C	T	3.341e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6088955	3L_6088955_SNP [dm3] 3L_6095855_SNP [dm6]	A	T	3.344e^-4	0.919	SYNONYMOUS_CODING loj	TF binding site mE1_TFBS_sens
3R	3817666	3R_3817666_SNP [dm3] 3R_7991944_SNP [dm6]	G	C	3.350e^-4	0.919	INTRON CG2781
3R	3771888	3R_3771888_SNP [dm3] 3R_7946166_SNP [dm6]	C	A	3.355e^-4	0.919	INTRON dsx
3L	5570164	3L_5570164_SNP [dm3] 3L_5577064_SNP [dm6]	A	G	3.356e^-4	0.919	INTRON Msr-110
3L	19917956	3L_19917956_SNP [dm3] 3L_19924856_SNP [dm6]	T	A	3.360e^-4	0.919	UPSTREAM Grasp65 DOWNSTREAM CG7770 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18356505	2R_18356505_SNP [dm3] 2R_22469000_SNP [dm6]	T	C	3.364e^-4	0.919	INTRON CG10384
2L	5377633	2L_5377633_SNP [dm3] 2L_5377633_SNP [dm6]	G	T	3.366e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9362458	2L_9362458_SNP [dm3] 2L_9362458_SNP [dm6]	C	T	3.370e^-4	0.919	INTERGENIC
3L	8403903	3L_8403903_SNP [dm3] 3L_8410803_SNP [dm6]	C	T	3.373e^-4	0.919	SYNONYMOUS_CODING Oseg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	18327042	3L_18327042_SNP [dm3] 3L_18333942_SNP [dm6]	G	C	3.378e^-4	0.919	INTERGENIC
2R	18707624	2R_18707624_SNP [dm3] 2R_22820119_SNP [dm6]	G	C	3.381e^-4	0.919	INTRON CG30271	TF binding site mE1_TFBS_chinmo
X	7751808	X_7751808_SNP [dm3] X_7857775_SNP [dm6]	A	G	3.386e^-4	0.919	UPSTREAM CG1409 INTERGENIC
X	12181490	X_12181490_SNP [dm3] X_12287457_SNP [dm6]	G	A	3.386e^-4	0.919	INTRON Ten-a
2R	18618922	2R_18618922_SNP [dm3] 2R_22731417_SNP [dm6]	A	G	3.392e^-4	0.919	SYNONYMOUS_CODING jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5731033	X_5731033_SNP [dm3] X_5837000_SNP [dm6]	A	T	3.405e^-4	0.919	SYNONYMOUS_CODING CG15765	TF binding site mE1_TFBS_chinmo
2R	18100330	2R_18100330_SNP [dm3] 2R_22212825_SNP [dm6]	C	A	3.406e^-4	0.919	UPSTREAM ari-2 DOWNSTREAM CG11291 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	10240185	3R_10240185_SNP [dm3] 3R_14414463_SNP [dm6]	G	T	3.406e^-4	0.919	INTRON cv-c
2L	6848383	2L_6848383_SNP [dm3] 2L_6848383_SNP [dm6]	G	T	3.414e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	5364066	2L_5364066_SNP [dm3] 2L_5364066_SNP [dm6]	A	T	3.419e^-4	0.919	DOWNSTREAM nompC INTRON nompC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2772424	2L_2772424_SNP [dm3] 2L_2772424_SNP [dm6]	T	G	3.420e^-4	0.919	UTR_3_PRIME Syt1 UPSTREAM CG15399
3L	12398219	3L_12398219_SNP [dm3] 3L_12405119_SNP [dm6]	G	A	3.432e^-4	0.919	SYNONYMOUS_CODING CG32103
3R	3822446	3R_3822446_DEL [dm3] 3R_7996724_DEL [dm6]	TT	T	3.433e^-4	0.919	UPSTREAM CG2781 INTERGENIC
3R	26466117	3R_26466117_SNP [dm3] 3R_30640395_SNP [dm6]	A	T	3.436e^-4	0.919	INTERGENIC
2R	18100294	2R_18100294_SNP [dm3] 2R_22212789_SNP [dm6]	C	T	3.440e^-4	0.919	UPSTREAM ari-2 DOWNSTREAM CG11291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	480288	X_480288_SNP [dm3] X_586255_SNP [dm6]	A	G	3.443e^-4	0.919	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10882029	3R_10882029_SNP [dm3] 3R_15056307_SNP [dm6]	G	A	3.447e^-4	0.919	UTR_3_PRIME dpr9 DOWNSTREAM dpr9
2L	10196817	2L_10196817_SNP [dm3] 2L_10196817_SNP [dm6]	G	A	3.460e^-4	0.919	NON_SYNONYMOUS_CODING Sur
3L	13162828	3L_13162828_DEL [dm3] 3L_13169728_DEL [dm6]	AAAA	G	3.462e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	9397643	3L_9397643_SNP [dm3] 3L_9404543_SNP [dm6]	A	T	3.463e^-4	0.919	UPSTREAM Cpr67B INTERGENIC
3R	3587530	3R_3587530_SNP [dm3] 3R_7761808_SNP [dm6]	A	T	3.464e^-4	0.919	INTRON Sp7
3L	9187213	3L_9187213_SNP [dm3] 3L_9194113_SNP [dm6]	T	A	3.473e^-4	0.919	INTERGENIC
3L	5149808	3L_5149808_SNP [dm3] 3L_5156708_SNP [dm6]	G	A	3.473e^-4	0.919	UTR_3_PRIME shep
3R	10143631	3R_10143631_SNP [dm3] 3R_14317909_SNP [dm6]	T	C	3.481e^-4	0.919	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18152045	3L_18152045_SNP [dm3] 3L_18158945_SNP [dm6]	G	A	3.491e^-4	0.919	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16215277	3L_16215277_SNP [dm3] 3L_16222177_SNP [dm6]	G	T	3.496e^-4	0.919	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	7068965	2R_7068965_SNP [dm3] 2R_11181460_SNP [dm6]	A	C	3.502e^-4	0.919	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18902575	3R_18902575_SNP [dm3] 3R_23076853_SNP [dm6]	G	A	3.509e^-4	0.919	SYNONYMOUS_CODING CG13830
3L	16215288	3L_16215288_SNP [dm3] 3L_16222188_SNP [dm6]	T	A	3.519e^-4	0.919	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16215290	3L_16215290_SNP [dm3] 3L_16222190_SNP [dm6]	T	G	3.519e^-4	0.919	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
X	5548348	X_5548348_SNP [dm3] X_5654315_SNP [dm6]	G	A	3.527e^-4	0.919	SYNONYMOUS_CODING CG42265	TF binding site mE1_TFBS_chinmo
2R	5202504	2R_5202504_DEL [dm3] 2R_9314999_DEL [dm6]	ATT	A	3.529e^-4	0.919	INTRON CG13739 & 1 other
3L	5537774	3L_5537774_SNP [dm3] 3L_5544674_SNP [dm6]	T	G	3.532e^-4	0.919	DOWNSTREAM CG10625 INTRON CG10625
2R	1686409	2R_1686409_SNP [dm3] 2R_5798904_SNP [dm6]	T	G	3.540e^-4	0.919	UPSTREAM Or42b INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	6796982	X_6796982_SNP [dm3] X_6902949_SNP [dm6]	C	A	3.546e^-4	0.919	INTERGENIC
3L	12630132	3L_12630132_SNP [dm3] 3L_12637032_SNP [dm6]	T	C	3.550e^-4	0.919	INTRON CR32111
3L	12630137	3L_12630137_SNP [dm3] 3L_12637037_SNP [dm6]	A	G	3.550e^-4	0.919	INTRON CR32111
3L	12630143	3L_12630143_SNP [dm3] 3L_12637043_SNP [dm6]	C	T	3.550e^-4	0.919	INTRON CR32111
3L	7640244	3L_7640244_SNP [dm3] 3L_7647144_SNP [dm6]	C	T	3.552e^-4	0.919	INTERGENIC
3R	15644923	3R_15644923_SNP [dm3] 3R_19819201_SNP [dm6]	A	G	3.562e^-4	0.919	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10523383	3L_10523383_SNP [dm3] 3L_10530283_SNP [dm6]	C	T	3.565e^-4	0.919	INTRON A2bp1
3L	8562714	3L_8562714_SNP [dm3] 3L_8569614_SNP [dm6]	G	T	3.565e^-4	0.919	INTRON rhea EXON CR43910	TF binding site mE1_TFBS_HSA
X	9820835	X_9820835_SNP [dm3] X_9926802_SNP [dm6]	C	A	3.568e^-4	0.919	INTERGENIC
3L	7642572	3L_7642572_INS [dm3] 3L_7649472_INS [dm6]	C	CTTCCTC	3.580e^-4	0.919	INTERGENIC
2L	5010864	2L_5010864_INS [dm3] 2L_5010864_INS [dm6]	C	CAGAGATC	3.580e^-4	0.919	UPSTREAM CG3887 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
3L	16885500	3L_16885500_SNP [dm3] 3L_16892400_SNP [dm6]	C	T	3.585e^-4	0.919	INTRON Lmpt
3L	10521241	3L_10521241_SNP [dm3] 3L_10528141_SNP [dm6]	T	A	3.603e^-4	0.919	INTRON A2bp1
X	16909935	X_16909935_SNP [dm3] X_17015902_SNP [dm6]	G	A	3.610e^-4	0.919	INTRON CG45002
X	7010087	X_7010087_SNP [dm3] X_7116054_SNP [dm6]	T	G	3.614e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9693797	3R_9693797_SNP [dm3] 3R_13868075_SNP [dm6]	A	G	3.624e^-4	0.919	INTRON E5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5574862	2L_5574862_SNP [dm3] 2L_5574862_SNP [dm6]	T	C	3.626e^-4	0.919	INTERGENIC
3L	6758745	3L_6758745_SNP [dm3] 3L_6765645_SNP [dm6]	A	T	3.626e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3L	10521432	3L_10521432_SNP [dm3] 3L_10528332_SNP [dm6]	G	C	3.629e^-4	0.919	INTRON A2bp1
X	1095051	X_1095051_SNP [dm3] X_1201018_SNP [dm6]	A	C	3.629e^-4	0.919	NON_SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_sens
2L	1091841	2L_1091841_SNP [dm3] 2L_1091841_SNP [dm6]	C	A	3.633e^-4	0.919	INTRON CG4629
2L	11046005	2L_11046005_SNP [dm3] 2L_11046005_SNP [dm6]	C	A	3.639e^-4	0.919	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27417396	3R_27417396_SNP [dm3] 3R_31591674_SNP [dm6]	C	T	3.641e^-4	0.919	SYNONYMOUS_CODING CG1638	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5158696	X_5158696_INS [dm3] X_5264663_INS [dm6]	A	ACCAAAAAAATTATGACAAG...	3.643e^-4	0.919	INTERGENIC
2R	20130960	2R_20130960_SNP [dm3] 2R_24243437_SNP [dm6]	C	T	3.645e^-4	0.919	UTR_5_PRIME nord	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6768605	2L_6768605_SNP [dm3] 2L_6768605_SNP [dm6]	T	G	3.647e^-4	0.919	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
3R	4111334	3R_4111334_SNP [dm3] 3R_8285612_SNP [dm6]	C	T	3.675e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19310284	2R_19310284_SNP [dm3] 2R_23422761_SNP [dm6]	A	G	3.678e^-4	0.919	UPSTREAM CG9815 INTRON CG9815
2R	16367305	2R_16367305_SNP [dm3] 2R_20479800_SNP [dm6]	A	G	3.680e^-4	0.919	DOWNSTREAM CG12484 INTERGENIC
2L	6711102	2L_6711102_SNP [dm3] 2L_6711102_SNP [dm6]	G	A	3.682e^-4	0.919	DOWNSTREAM AkhR INTERGENIC
2R	16856400	2R_16856400_SNP [dm3] 2R_20968895_SNP [dm6]	G	A	3.685e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4122438	2R_4122438_SNP [dm3] 2R_8234933_SNP [dm6]	G	A	3.689e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8431245	2R_8431245_SNP [dm3] 2R_12543740_SNP [dm6]	T	C	3.690e^-4	0.919	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1077851	X_1077851_SNP [dm3] X_1183818_SNP [dm6]	A	G	3.692e^-4	0.919	UPSTREAM CG14626 DOWNSTREAM CG14627 INTERGENIC
X	21119372	X_21119372_INS [dm3] X_21248345_INS [dm6]	T	TT	3.695e^-4	0.919	INTRON CG32521
2R	8479606	2R_8479606_SNP [dm3] 2R_12592101_SNP [dm6]	T	C	3.703e^-4	0.919	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18711123	2R_18711123_SNP [dm3] 2R_22823600_SNP [dm6]	G	A	3.705e^-4	0.919	INTRON CG42284
X	18513027	X_18513027_SNP [dm3] X_18618994_SNP [dm6]	G	A	3.707e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	13177079	3L_13177079_DEL [dm3] 3L_13183979_DEL [dm6]	CTC	C	3.708e^-4	0.919	INTERGENIC
X	9820846	X_9820846_SNP [dm3] X_9926813_SNP [dm6]	A	T	3.720e^-4	0.919	INTERGENIC
2L	3393437	2L_3393437_SNP [dm3] 2L_3393437_SNP [dm6]	C	A	3.729e^-4	0.919	INTERGENIC
2R	13934419	2R_13934419_SNP [dm3] 2R_18046914_SNP [dm6]	C	T	3.749e^-4	0.919	INTRON CG5767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18372677	2R_18372677_SNP [dm3] 2R_22485172_SNP [dm6]	G	A	3.754e^-4	0.919	SYNONYMOUS_CODING CG4554
2R	17262747	2R_17262747_SNP [dm3] 2R_21375242_SNP [dm6]	A	G	3.755e^-4	0.919	INTRON cv-2
2R	8479638	2R_8479638_SNP [dm3] 2R_12592133_SNP [dm6]	A	T	3.768e^-4	0.919	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26466099	3R_26466099_SNP [dm3] 3R_30640377_SNP [dm6]	A	C	3.768e^-4	0.919	INTERGENIC
3L	2712481	3L_2712481_SNP [dm3] 3L_2712481_SNP [dm6]	T	C	3.769e^-4	0.919	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26802956	3R_26802956_SNP [dm3] 3R_30977234_SNP [dm6]	G	T	3.771e^-4	0.919	INTRON 5-HT7
2R	4200091	2R_4200091_SNP [dm3] 2R_8312586_SNP [dm6]	A	G	3.774e^-4	0.919	DOWNSTREAM CR44450 INTERGENIC
2R	18493314	2R_18493314_SNP [dm3] 2R_22605809_SNP [dm6]	C	T	3.779e^-4	0.919	UTR_5_PRIME RpS16 UPSTREAM RpS16 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9693884	3R_9693884_SNP [dm3] 3R_13868162_SNP [dm6]	G	A	3.785e^-4	0.919	INTRON E5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2724922	3R_2724922_SNP [dm3] 3R_6899200_SNP [dm6]	G	T	3.799e^-4	0.919	INTRON Antp
X	1037987	X_1037987_DEL [dm3] X_1143954_DEL [dm6]	AAA	A	3.800e^-4	0.919	INTERGENIC
2L	10764772	2L_10764772_SNP [dm3] 2L_10764772_SNP [dm6]	G	A	3.802e^-4	0.919	SYNONYMOUS_CODING CG6495 DOWNSTREAM UbcD2	TF binding site mE1_TFBS_chinmo
X	20863488	X_20863488_SNP [dm3] X_20992461_SNP [dm6]	G	A	3.812e^-4	0.919	INTERGENIC
2R	18446148	2R_18446148_SNP [dm3] 2R_22558643_SNP [dm6]	A	G	3.820e^-4	0.919	INTRON px
2L	5922802	2L_5922802_SNP [dm3] 2L_5922802_SNP [dm6]	A	C	3.820e^-4	0.919	DOWNSTREAM CG9016 & 1 other INTERGENIC
2L	11030569	2L_11030569_DEL [dm3] 2L_11030569_DEL [dm6]	ACGTG	A	3.829e^-4	0.919	INTRON Samuel	TF binding site mE1_TFBS_cad
2R	4616965	2R_4616965_SNP [dm3] 2R_8729460_SNP [dm6]	T	C	3.850e^-4	0.919	SYNONYMOUS_CODING CG30356 DOWNSTREAM stmA & 1 other
3L	10524049	3L_10524049_SNP [dm3] 3L_10530949_SNP [dm6]	C	T	3.852e^-4	0.919	INTRON A2bp1
3L	13162970	3L_13162970_SNP [dm3] 3L_13169870_SNP [dm6]	A	G	3.857e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
X	1077231	X_1077231_SNP [dm3] X_1183198_SNP [dm6]	A	G	3.860e^-4	0.919	UTR_3_PRIME CG14627
3R	26801426	3R_26801426_SNP [dm3] 3R_30975704_SNP [dm6]	C	T	3.866e^-4	0.919	INTRON 5-HT7
3L	1006692	3L_1006692_SNP [dm3] 3L_1006692_SNP [dm6]	C	T	3.867e^-4	0.919	INTRON trio
3L	16215280	3L_16215280_SNP [dm3] 3L_16222180_SNP [dm6]	C	A	3.871e^-4	0.919	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26595162	3R_26595162_SNP [dm3] 3R_30769440_SNP [dm6]	C	G	3.877e^-4	0.919	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1095709	X_1095709_SNP [dm3] X_1201676_SNP [dm6]	T	C	3.877e^-4	0.919	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_chinmo
X	19721494	X_19721494_SNP [dm3] X_19827461_SNP [dm6]	C	T	3.883e^-4	0.919	INTERGENIC
X	17445560	X_17445560_INS [dm3] X_17551527_INS [dm6]	C	CGTC	3.883e^-4	0.919	INTRON CG43658
2R	17390838	2R_17390838_SNP [dm3] 2R_21503333_SNP [dm6]	C	T	3.884e^-4	0.919	INTRON MESK2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_Trl
3R	19008058	3R_19008058_SNP [dm3] 3R_23182336_SNP [dm6]	C	A	3.888e^-4	0.919	UPSTREAM Irk1 INTRON Irk1
X	14746808	X_14746808_SNP [dm3] X_14852775_SNP [dm6]	T	C	3.890e^-4	0.919	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo
2L	8145400	2L_8145400_DEL [dm3] 2L_8145400_DEL [dm6]	TGATAT	T	3.895e^-4	0.919	UPSTREAM CG43394 & 1 other INTRON CG8552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5237380	2R_5237380_SNP [dm3] 2R_9349875_SNP [dm6]	T	A	3.896e^-4	0.919	INTRON CG13954 & 1 other
3R	13322532	3R_13322532_SNP [dm3] 3R_17496810_SNP [dm6]	G	T	3.897e^-4	0.919	INTRON Dscam3
2R	9033940	2R_9033940_SNP [dm3] 2R_13146435_SNP [dm6]	T	G	3.903e^-4	0.919	UTR_3_PRIME Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad
2R	11886374	2R_11886374_SNP [dm3] 2R_15998869_SNP [dm6]	T	G	3.903e^-4	0.919	INTRON ATPCL
3R	27062507	3R_27062507_SNP [dm3] 3R_31236785_SNP [dm6]	T	C	3.905e^-4	0.919	UTR_3_PRIME qless
2L	3875312	2L_3875312_SNP [dm3] 2L_3875312_SNP [dm6]	G	A	3.917e^-4	0.919	INTRON capu	TF binding site mE1_TFBS_chinmo
X	14341599	X_14341599_SNP [dm3] X_14447566_SNP [dm6]	A	T	3.921e^-4	0.919	INTRON dpr8
2L	8960068	2L_8960068_DEL [dm3] 2L_8960068_DEL [dm6]	GTCGA	G	3.930e^-4	0.919	UTR_3_PRIME CG9525 DOWNSTREAM CG9525
X	12194978	X_12194978_SNP [dm3] X_12300945_SNP [dm6]	A	G	3.933e^-4	0.919	INTRON Ten-a
2R	13307553	2R_13307553_SNP [dm3] 2R_17420048_SNP [dm6]	A	G	3.933e^-4	0.919	UPSTREAM l_2_k01209 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11667785	3R_11667785_SNP [dm3] 3R_15842063_SNP [dm6]	T	A	3.935e^-4	0.919	INTRON spn-E
3L	13322172	3L_13322172_SNP [dm3] 3L_13329072_SNP [dm6]	A	T	3.939e^-4	0.919	UPSTREAM CG14113 INTERGENIC
3L	8996898	3L_8996898_SNP [dm3] 3L_9003798_SNP [dm6]	C	T	3.945e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	13937613	2R_13937613_SNP [dm3] 2R_18050108_SNP [dm6]	T	C	3.953e^-4	0.919	UTR_3_PRIME Muc55B UPSTREAM CG14495 DOWNSTREAM Muc55B
3R	24020455	3R_24020455_SNP [dm3] 3R_28194733_SNP [dm6]	C	G	3.962e^-4	0.919	INTRON CG34354
X	4457277	X_4457277_SNP [dm3] X_4563244_SNP [dm6]	A	T	3.969e^-4	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10461289	2L_10461289_SNP [dm3] 2L_10461289_SNP [dm6]	G	T	3.971e^-4	0.919	INTRON LM408	TF binding site mE1_TFBS_cad
2L	2355587	2L_2355587_SNP [dm3] 2L_2355587_SNP [dm6]	G	A	3.974e^-4	0.919	INTRON CG9967 & 1 other
2R	15700132	2R_15700132_SNP [dm3] 2R_19812627_SNP [dm6]	C	T	3.976e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1095435	X_1095435_SNP [dm3] X_1201402_SNP [dm6]	A	C	3.987e^-4	0.919	NON_SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_sens
3L	9092653	3L_9092653_SNP [dm3] 3L_9099553_SNP [dm6]	C	T	3.995e^-4	0.919	UTR_3_PRIME bol
3R	14034257	3R_14034257_SNP [dm3] 3R_18208535_SNP [dm6]	A	G	3.996e^-4	0.919	UPSTREAM CG44158 INTRON CG7985
2R	17333199	2R_17333199_SNP [dm3] 2R_21445694_SNP [dm6]	G	T	3.999e^-4	0.919	INTRON Sdc
3R	5302984	3R_5302984_INS [dm3] 3R_9477262_INS [dm6]	A	AAG	3.999e^-4	0.919	INTRON CG16779
3L	8755419	3L_8755419_SNP [dm3] 3L_8762319_SNP [dm6]	G	C	4.000e^-4	0.919	SYNONYMOUS_CODING Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8169176	2L_8169176_SNP [dm3] 2L_8169176_SNP [dm6]	A	C	4.011e^-4	0.919	INTRON Piezo
2L	7598412	2L_7598412_SNP [dm3] 2L_7598412_SNP [dm6]	G	T	4.012e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1393193	3L_1393193_SNP [dm3] 3L_1393193_SNP [dm6]	G	A	4.013e^-4	0.919	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	9234720	3R_9234720_SNP [dm3] 3R_13408998_SNP [dm6]	A	G	4.021e^-4	0.919	DOWNSTREAM yellow-e INTERGENIC
2R	5150155	2R_5150155_SNP [dm3] 2R_9262650_SNP [dm6]	A	G	4.027e^-4	0.919	SPLICE_SITE_REGION CG34141 INTRON Pkn & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6804984	3L_6804984_SNP [dm3] 3L_6811884_SNP [dm6]	T	A	4.039e^-4	0.919	INTERGENIC
3L	9187357	3L_9187357_SNP [dm3] 3L_9194257_SNP [dm6]	G	T	4.045e^-4	0.919	INTERGENIC
3R	24203463	3R_24203463_DEL [dm3] 3R_28377741_DEL [dm6]	CCATACCC	C	4.047e^-4	0.919	INTERGENIC
2R	12398335	2R_12398335_SNP [dm3] 2R_16510830_SNP [dm6]	C	T	4.048e^-4	0.919	INTRON Sema-2a
X	455756	X_455756_SNP [dm3] X_561723_SNP [dm6]	G	A	4.051e^-4	0.919	INTRON Appl
X	10819108	X_10819108_SNP [dm3] X_10925075_SNP [dm6]	A	G	4.055e^-4	0.919	SYNONYMOUS_CODING v
3L	3018492	3L_3018492_SNP [dm3] 3L_3018492_SNP [dm6]	C	T	4.056e^-4	0.919	INTERGENIC
X	20868308	X_20868308_SNP [dm3] X_20997281_SNP [dm6]	C	T	4.056e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4446475	X_4446475_SNP [dm3] X_4552442_SNP [dm6]	C	T	4.059e^-4	0.919	SYNONYMOUS_CODING CG3527 UPSTREAM CG11436 DOWNSTREAM CG11444 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12993931	3L_12993931_SNP [dm3] 3L_13000831_SNP [dm6]	G	C	4.059e^-4	0.919	INTERGENIC
3R	24028104	3R_24028104_SNP [dm3] 3R_28202382_SNP [dm6]	C	T	4.070e^-4	0.919	INTRON CG34354
X	461588	X_461588_SNP [dm3] X_567555_SNP [dm6]	T	C	4.074e^-4	0.919	INTRON Appl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18495673	2R_18495673_SNP [dm3] 2R_22608168_SNP [dm6]	G	A	4.075e^-4	0.919	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175a & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9297624	3L_9297624_SNP [dm3] 3L_9304524_SNP [dm6]	G	A	4.077e^-4	0.919	INTERGENIC
2L	11226434	2L_11226434_SNP [dm3] 2L_11226434_SNP [dm6]	G	A	4.077e^-4	0.919	INTRON ab
3L	6791750	3L_6791750_SNP [dm3] 3L_6798650_SNP [dm6]	G	T	4.078e^-4	0.919	INTERGENIC
2L	7026716	2L_7026716_SNP [dm3] 2L_7026716_SNP [dm6]	G	A	4.088e^-4	0.919	SPLICE_SITE_REGION CG31908 UPSTREAM CG3476 INTRON CG31908	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	22104518	3R_22104518_SNP [dm3] 3R_26278796_SNP [dm6]	C	A	4.089e^-4	0.919	INTERGENIC
3L	10521382	3L_10521382_SNP [dm3] 3L_10528282_SNP [dm6]	C	T	4.104e^-4	0.919	INTRON A2bp1
2R	18881763	2R_18881763_SNP [dm3] 2R_22994240_SNP [dm6]	G	A	4.111e^-4	0.919	UTR_3_PRIME CG9896 INTRON twi
2R	16029574	2R_16029574_SNP [dm3] 2R_20142069_SNP [dm6]	G	T	4.111e^-4	0.919	INTERGENIC
2R	10193143	2R_10193143_INS [dm3] 2R_14305638_INS [dm6]	T	TTTGGTAGT	4.118e^-4	0.919	INTERGENIC
2R	20146961	2R_20146961_SNP [dm3] 2R_24259438_SNP [dm6]	G	T	4.120e^-4	0.919	INTRON CG3376
3R	11529783	3R_11529783_SNP [dm3] 3R_15704061_SNP [dm6]	A	G	4.132e^-4	0.919	UPSTREAM CG5404 INTERGENIC
3L	13340934	3L_13340934_SNP [dm3] 3L_13347834_SNP [dm6]	T	A	4.143e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10891330	2L_10891330_SNP [dm3] 2L_10891330_SNP [dm6]	C	T	4.145e^-4	0.919	INTERGENIC
3R	9744077	3R_9744077_SNP [dm3] 3R_13918355_SNP [dm6]	G	A	4.155e^-4	0.919	INTERGENIC
3L	19998318	3L_19998318_SNP [dm3] 3L_20005218_SNP [dm6]	C	T	4.158e^-4	0.919	UPSTREAM kug DOWNSTREAM CG7668 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	5939568	3L_5939568_SNP [dm3] 3L_5946468_SNP [dm6]	G	T	4.160e^-4	0.919	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	5445317	2L_5445317_SNP [dm3] 2L_5445317_SNP [dm6]	A	G	4.174e^-4	0.919	INTERGENIC
2L	8290416	2L_8290416_DEL [dm3] 2L_8290416_DEL [dm6]	AT	A	4.183e^-4	0.919	UPSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17090042	3R_17090042_SNP [dm3] 3R_21264320_SNP [dm6]	A	G	4.186e^-4	0.919	SYNONYMOUS_CODING ETHR DOWNSTREAM ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8990361	X_8990361_SNP [dm3] X_9096328_SNP [dm6]	T	G	4.188e^-4	0.919	INTRON CG7766
3L	6465178	3L_6465178_SNP [dm3] 3L_6472078_SNP [dm6]	G	C	4.192e^-4	0.919	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6465179	3L_6465179_SNP [dm3] 3L_6472079_SNP [dm6]	T	A	4.192e^-4	0.919	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18598844	3L_18598844_SNP [dm3] 3L_18605744_SNP [dm6]	C	G	4.195e^-4	0.919	NON_SYNONYMOUS_CODING CG18233 DOWNSTREAM CG18234 INTRON CG4174 & 1 other
3R	9267280	3R_9267280_SNP [dm3] 3R_13441558_SNP [dm6]	A	G	4.201e^-4	0.919	INTERGENIC
3R	9267282	3R_9267282_SNP [dm3] 3R_13441560_SNP [dm6]	G	A	4.201e^-4	0.919	INTERGENIC
X	14747963	X_14747963_SNP [dm3] X_14853930_SNP [dm6]	A	T	4.221e^-4	0.919	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	18159373	3R_18159373_SNP [dm3] 3R_22333651_SNP [dm6]	T	C	4.232e^-4	0.919	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG5388
X	13923955	X_13923955_SNP [dm3] X_14029922_SNP [dm6]	A	T	4.235e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1188433	X_1188433_SNP [dm3] X_1294400_SNP [dm6]	C	G	4.236e^-4	0.919	INTRON DAAM	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23564194	3R_23564194_SNP [dm3] 3R_27738472_SNP [dm6]	A	G	4.237e^-4	0.919	INTRON Ets98B
2R	3317718	2R_3317718_SNP [dm3] 2R_7430213_SNP [dm6]	T	A	4.242e^-4	0.919	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
2R	12810265	2R_12810265_SNP [dm3] 2R_16922760_SNP [dm6]	T	C	4.243e^-4	0.919	INTERGENIC
2L	7333347	2L_7333347_SNP [dm3] 2L_7333347_SNP [dm6]	T	A	4.252e^-4	0.919	UPSTREAM Wnt6 INTERGENIC
2L	9950071	2L_9950071_SNP [dm3] 2L_9950071_SNP [dm6]	A	T	4.253e^-4	0.919	DOWNSTREAM mir-87 INTERGENIC
X	19537738	X_19537738_SNP [dm3] X_19643705_SNP [dm6]	G	A	4.257e^-4	0.919	UPSTREAM Sec61gamma & 1 other DOWNSTREAM Arp10 INTRON Sec61gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16405283	2L_16405283_SNP [dm3] 2L_16405283_SNP [dm6]	T	A	4.257e^-4	0.919	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4353635	2L_4353635_SNP [dm3] 2L_4353635_SNP [dm6]	A	T	4.258e^-4	0.919	INTRON CG15429	TF binding site BDTNP1_TFBS_prd
2L	4353638	2L_4353638_SNP [dm3] 2L_4353638_SNP [dm6]	A	T	4.258e^-4	0.919	INTRON CG15429	TF binding site BDTNP1_TFBS_prd
2L	4353639	2L_4353639_SNP [dm3] 2L_4353639_SNP [dm6]	T	C	4.258e^-4	0.919	INTRON CG15429	TF binding site BDTNP1_TFBS_prd
2R	8478783	2R_8478783_SNP [dm3] 2R_12591278_SNP [dm6]	G	C	4.260e^-4	0.919	DOWNSTREAM CR30055 INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	473938	X_473938_SNP [dm3] X_579905_SNP [dm6]	A	G	4.263e^-4	0.919	DOWNSTREAM Appl INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9103451	3R_9103451_DEL [dm3] 3R_13277729_DEL [dm6]	TC	T	4.263e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7017416	2L_7017416_SNP [dm3] 2L_7017416_SNP [dm6]	G	T	4.276e^-4	0.919	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17780680	2R_17780680_SNP [dm3] 2R_21893175_SNP [dm6]	T	G	4.279e^-4	0.919	INTRON Fili
3L	3379312	3L_3379312_SNP [dm3] 3L_3379312_SNP [dm6]	C	T	4.280e^-4	0.919	SYNONYMOUS_CODING CG12014
3L	3379366	3L_3379366_SNP [dm3] 3L_3379366_SNP [dm6]	G	T	4.280e^-4	0.919	SYNONYMOUS_CODING CG12014
2R	7069003	2R_7069003_SNP [dm3] 2R_11181498_SNP [dm6]	T	A	4.283e^-4	0.919	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6329909	X_6329909_SNP [dm3] X_6435876_SNP [dm6]	A	G	4.287e^-4	0.919	INTRON CG42340	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18099928	2R_18099928_SNP [dm3] 2R_22212423_SNP [dm6]	T	C	4.292e^-4	0.919	UTR_3_PRIME CG11291 UPSTREAM ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	5569717	3L_5569717_SNP [dm3] 3L_5576617_SNP [dm6]	C	A	4.295e^-4	0.919	INTRON Msr-110
X	1077806	X_1077806_SNP [dm3] X_1183773_SNP [dm6]	C	T	4.301e^-4	0.919	DOWNSTREAM CG14627 INTERGENIC
2L	5634626	2L_5634626_SNP [dm3] 2L_5634626_SNP [dm6]	G	A	4.309e^-4	0.919	INTRON CG31646	TF binding site BDTNP1_TFBS_hb
X	3462314	X_3462314_SNP [dm3] X_3568281_SNP [dm6]	A	C	4.309e^-4	0.919	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8731386	3L_8731386_SNP [dm3] 3L_8738286_SNP [dm6]	T	C	4.310e^-4	0.919	INTRON Prm
2L	22001210	2L_22001210_SNP [dm3] 2L_22001210_SNP [dm6]	A	C	4.319e^-4	0.919	UPSTREAM CR44916 INTERGENIC
3L	9297387	3L_9297387_SNP [dm3] 3L_9304287_SNP [dm6]	A	G	4.324e^-4	0.919	INTERGENIC
3L	618523	3L_618523_SNP [dm3] 3L_618523_SNP [dm6]	G	A	4.326e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1091884	X_1091884_SNP [dm3] X_1197851_SNP [dm6]	A	T	4.326e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10576067	3R_10576067_SNP [dm3] 3R_14750345_SNP [dm6]	G	C	4.328e^-4	0.919	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	9186917	X_9186917_SNP [dm3] X_9292884_SNP [dm6]	T	C	4.328e^-4	0.919	INTRON lz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18194246	2R_18194246_SNP [dm3] 2R_22306741_SNP [dm6]	G	A	4.329e^-4	0.919	INTRON wdp
3R	16938917	3R_16938917_SNP [dm3] 3R_21113195_SNP [dm6]	G	A	4.341e^-4	0.919	INTRON Rab11	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	1185760	2L_1185760_SNP [dm3] 2L_1185760_SNP [dm6]	T	G	4.354e^-4	0.919	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	480328	X_480328_SNP [dm3] X_586295_SNP [dm6]	T	C	4.364e^-4	0.919	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13066649	3R_13066649_SNP [dm3] 3R_17240927_SNP [dm6]	C	G	4.364e^-4	0.919	INTRON beat-IIb
3R	14043333	3R_14043333_SNP [dm3] 3R_18217611_SNP [dm6]	T	A	4.364e^-4	0.919	DOWNSTREAM CG7183 INTRON CG14314	TF binding site mE1_TFBS_cad
3L	7225303	3L_7225303_INS [dm3] 3L_7232203_INS [dm6]	A	ATATAAA	4.372e^-4	0.919	INTERGENIC
3R	11540658	3R_11540658_SNP [dm3] 3R_15714936_SNP [dm6]	G	T	4.398e^-4	0.919	DOWNSTREAM CG31294 INTERGENIC
3L	8816236	3L_8816236_INS [dm3] 3L_8823136_INS [dm6]	C	CC	4.402e^-4	0.919	INTERGENIC
3L	17363427	3L_17363427_SNP [dm3] 3L_17370327_SNP [dm6]	A	G	4.405e^-4	0.919	SYNONYMOUS_CODING Cad74A
2R	15474445	2R_15474445_SNP [dm3] 2R_19586940_SNP [dm6]	C	G	4.406e^-4	0.919	UPSTREAM CG42878 INTRON sm
2L	4710638	2L_4710638_SNP [dm3] 2L_4710638_SNP [dm6]	G	A	4.406e^-4	0.919	INTRON CG34351	TF binding site mE1_TFBS_chinmo
3L	902978	3L_902978_SNP [dm3] 3L_902978_SNP [dm6]	G	A	4.407e^-4	0.919	SYNONYMOUS_CODING CG13905	TF binding site mE1_TFBS_sens
3L	4535300	3L_4535300_SNP [dm3] 3L_4535300_SNP [dm6]	T	A	4.412e^-4	0.919	INTRON CG11353
3R	9693844	3R_9693844_SNP [dm3] 3R_13868122_SNP [dm6]	C	T	4.415e^-4	0.919	INTRON E5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9521466	2R_9521466_SNP [dm3] 2R_13633961_SNP [dm6]	T	C	4.416e^-4	0.919	INTRON fas
2L	12617270	2L_12617270_SNP [dm3] 2L_12617270_SNP [dm6]	C	A	4.422e^-4	0.919	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3430589	3L_3430589_SNP [dm3] 3L_3430589_SNP [dm6]	G	T	4.430e^-4	0.919	INTRON eIF5B
2L	9296199	2L_9296199_SNP [dm3] 2L_9296199_SNP [dm6]	T	C	4.433e^-4	0.919	UTR_3_PRIME Ggamma30A DOWNSTREAM Ggamma30A	TF binding site mE1_TFBS_sens
2L	5184455	2L_5184455_SNP [dm3] 2L_5184455_SNP [dm6]	A	C	4.434e^-4	0.919	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
3L	16744852	3L_16744852_SNP [dm3] 3L_16751752_SNP [dm6]	T	C	4.442e^-4	0.919	INTERGENIC
3L	13621604	3L_13621604_SNP [dm3] 3L_13628504_SNP [dm6]	G	A	4.448e^-4	0.919	INTRON bru-3
3L	5899877	3L_5899877_SNP [dm3] 3L_5906777_SNP [dm6]	T	A	4.450e^-4	0.919	UPSTREAM CG13288 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	14747757	X_14747757_SNP [dm3] X_14853724_SNP [dm6]	T	C	4.454e^-4	0.919	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	5974195	X_5974195_SNP [dm3] X_6080162_SNP [dm6]	C	G	4.458e^-4	0.919	INTRON CG4660	TF binding site BDTNP1_TFBS_dl
3R	9228984	3R_9228984_SNP [dm3] 3R_13403262_SNP [dm6]	A	T	4.459e^-4	0.919	UPSTREAM CG33977 DOWNSTREAM yellow-e3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	8990367	X_8990367_SNP [dm3] X_9096334_SNP [dm6]	C	G	4.465e^-4	0.919	INTRON CG7766
2L	5300993	2L_5300993_SNP [dm3] 2L_5300993_SNP [dm6]	T	C	4.468e^-4	0.919	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5440256	2L_5440256_SNP [dm3] 2L_5440256_SNP [dm6]	G	A	4.473e^-4	0.919	UPSTREAM CR31647 INTERGENIC
X	12820845	X_12820845_SNP [dm3] X_12926812_SNP [dm6]	C	T	4.482e^-4	0.919	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7458318	X_7458318_SNP [dm3] X_7564285_SNP [dm6]	A	C	4.496e^-4	0.919	UPSTREAM CR44502 INTERGENIC
X	7459074	X_7459074_SNP [dm3] X_7565041_SNP [dm6]	C	T	4.496e^-4	0.919	INTERGENIC
X	1095023	X_1095023_INS [dm3] X_1200990_INS [dm6]	C	CTTATACTG	4.508e^-4	0.919	FRAME_SHIFT CG14625	TF binding site mE1_TFBS_sens
3L	2277909	3L_2277909_SNP [dm3] 3L_2277909_SNP [dm6]	A	C	4.511e^-4	0.919	UTR_3_PRIME yellow-g2
X	9186929	X_9186929_SNP [dm3] X_9292896_SNP [dm6]	C	T	4.515e^-4	0.919	INTRON lz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17238199	3L_17238199_INS [dm3] 3L_17245099_INS [dm6]	A	AA	4.527e^-4	0.919	UPSTREAM CR43870 DOWNSTREAM CG7707 INTERGENIC	transposable element FlyBase
X	2603350	X_2603350_SNP [dm3] X_2709317_SNP [dm6]	G	C	4.530e^-4	0.919	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
2L	16570611	2L_16570611_SNP [dm3] 2L_16570611_SNP [dm6]	C	G	4.535e^-4	0.919	INTRON CG42389
2L	11226429	2L_11226429_SNP [dm3] 2L_11226429_SNP [dm6]	C	G	4.542e^-4	0.919	INTRON ab
2L	1950888	2L_1950888_SNP [dm3] 2L_1950888_SNP [dm6]	C	T	4.553e^-4	0.919	UTR_3_PRIME erm	TF binding site mE1_TFBS_chinmo
2L	2229223	2L_2229223_SNP [dm3] 2L_2229223_SNP [dm6]	A	C	4.553e^-4	0.919	INTRON rti
3R	3858336	3R_3858336_SNP [dm3] 3R_8032614_SNP [dm6]	G	A	4.554e^-4	0.919	SYNONYMOUS_CODING CG11035 UPSTREAM unc-45 DOWNSTREAM CG10903	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7249140	2L_7249140_SNP [dm3] 2L_7249140_SNP [dm6]	A	G	4.555e^-4	0.919	UTR_5_PRIME Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	17939476	2R_17939476_SNP [dm3] 2R_22051971_SNP [dm6]	G	C	4.557e^-4	0.919	INTERGENIC
2L	18583008	2L_18583008_SNP [dm3] 2L_18583008_SNP [dm6]	A	T	4.564e^-4	0.919	INTRON Pde11	transposable element FlyBase
3L	5339938	3L_5339938_SNP [dm3] 3L_5346838_SNP [dm6]	A	G	4.569e^-4	0.919	INTRON lama
2R	7069683	2R_7069683_SNP [dm3] 2R_11182178_SNP [dm6]	T	C	4.571e^-4	0.919	INTRON shn	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	14396302	3L_14396302_SNP [dm3] 3L_14403202_SNP [dm6]	T	C	4.572e^-4	0.919	UTR_3_PRIME stwl UPSTREAM CG3868 DOWNSTREAM stwl
3R	2831568	3R_2831568_SNP [dm3] 3R_7005846_SNP [dm6]	G	A	4.574e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5522999	2L_5522999_DEL [dm3] 2L_5522999_DEL [dm6]	AA	C	4.576e^-4	0.919	INTRON CG7371	TF binding site mE1_TFBS_sens
2L	3514065	2L_3514065_SNP [dm3] 2L_3514065_SNP [dm6]	A	G	4.582e^-4	0.919	SYNONYMOUS_CODING CG33123 UPSTREAM CG17593	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13936764	2R_13936764_SNP [dm3] 2R_18049259_SNP [dm6]	T	A	4.582e^-4	0.919	DOWNSTREAM CG34005 & 1 other INTRON CG14495
X	7751885	X_7751885_INS [dm3] X_7857852_INS [dm6]	T	TGCTAAATGGAATT...	4.588e^-4	0.919	UPSTREAM CG1409 INTERGENIC
X	8990359	X_8990359_SNP [dm3] X_9096326_SNP [dm6]	A	C	4.591e^-4	0.919	INTRON CG7766
X	19977438	X_19977438_SNP [dm3] X_20083405_SNP [dm6]	C	T	4.595e^-4	0.919	INTERGENIC
2L	5184321	2L_5184321_SNP [dm3] 2L_5184321_SNP [dm6]	A	C	4.598e^-4	0.919	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
3L	12603935	3L_12603935_SNP [dm3] 3L_12610835_SNP [dm6]	T	C	4.601e^-4	0.919	INTRON caup	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	821829	3L_821829_SNP [dm3] 3L_821829_SNP [dm6]	C	G	4.602e^-4	0.919	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7361698	X_7361698_SNP [dm3] X_7467665_SNP [dm6]	T	C	4.602e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	722518	2L_722518_SNP [dm3] 2L_722518_SNP [dm6]	T	C	4.610e^-4	0.919	INTERGENIC
3L	5171134	3L_5171134_SNP [dm3] 3L_5178034_SNP [dm6]	T	A	4.613e^-4	0.919	INTRON shep
3L	19448627	3L_19448627_SNP [dm3] 3L_19455527_SNP [dm6]	C	A	4.615e^-4	0.919	EXON CR45434
X	5467037	X_5467037_SNP [dm3] X_5573004_SNP [dm6]	G	A	4.618e^-4	0.919	INTERGENIC
X	17228718	X_17228718_SNP [dm3] X_17334685_SNP [dm6]	A	T	4.630e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2207967	2L_2207967_SNP [dm3] 2L_2207967_SNP [dm6]	G	A	4.632e^-4	0.919	SYNONYMOUS_CODING CG33124
3L	17752431	3L_17752431_SNP [dm3] 3L_17759331_SNP [dm6]	G	A	4.634e^-4	0.919	SYNONYMOUS_CODING CG32182 UPSTREAM CG32181 INTRON Adgf-A & 1 other
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	4.643e^-4	0.919	INTRON CG33700
3R	25133407	3R_25133407_SNP [dm3] 3R_29307685_SNP [dm6]	C	T	4.645e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20867485	X_20867485_SNP [dm3] X_20996458_SNP [dm6]	A	G	4.647e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3874586	2L_3874586_SNP [dm3] 2L_3874586_SNP [dm6]	A	C	4.651e^-4	0.919	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
3R	22115231	3R_22115231_SNP [dm3] 3R_26289509_SNP [dm6]	A	G	4.657e^-4	0.919	INTERGENIC
2L	11226423	2L_11226423_SNP [dm3] 2L_11226423_SNP [dm6]	A	G	4.659e^-4	0.919	INTRON ab
3R	14736089	3R_14736089_DEL [dm3] 3R_18910367_DEL [dm6]	AGTCATAA	A	4.661e^-4	0.919	UTR_3_PRIME EndoA DOWNSTREAM CG14291 & 1 other
2R	7194684	2R_7194684_DEL [dm3] 2R_11307179_DEL [dm6]	GCCCATG	G	4.661e^-4	0.919	UPSTREAM CG7745 INTRON Fpps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	15788091	X_15788091_SNP [dm3] X_15894058_SNP [dm6]	G	A	4.665e^-4	0.919	INTRON shi
2L	12212685	2L_12212685_SNP [dm3] 2L_12212685_SNP [dm6]	A	G	4.673e^-4	0.919	INTRON aret
3L	7225215	3L_7225215_SNP [dm3] 3L_7232115_SNP [dm6]	A	T	4.673e^-4	0.919	INTERGENIC
3R	25548682	3R_25548682_SNP [dm3] 3R_29722960_SNP [dm6]	A	G	4.674e^-4	0.919	UTR_3_PRIME CG34296 UPSTREAM Pcd DOWNSTREAM CG15506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3R	9086155	3R_9086155_SNP [dm3] 3R_13260433_SNP [dm6]	C	G	4.678e^-4	0.919	START_GAINED CG11686 UTR_5_PRIME CG11686 UPSTREAM Ace INTRON CG11686
2R	18994938	2R_18994938_DEL [dm3] 2R_23107415_DEL [dm6]	GAATGAAATTAAG...	G	4.687e^-4	0.919	INTERGENIC
3L	12398398	3L_12398398_SNP [dm3] 3L_12405298_SNP [dm6]	C	G	4.697e^-4	0.919	INTRON CG32103
X	8630206	X_8630206_SNP [dm3] X_8736173_SNP [dm6]	T	C	4.701e^-4	0.919	INTERGENIC
3R	22247974	3R_22247974_SNP [dm3] 3R_26422252_SNP [dm6]	T	A	4.704e^-4	0.919	INTERGENIC
3L	12584858	3L_12584858_SNP [dm3] 3L_12591758_SNP [dm6]	T	G	4.705e^-4	0.919	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25854817	3R_25854817_SNP [dm3] 3R_30029095_SNP [dm6]	T	A	4.710e^-4	0.919	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5160836	2L_5160836_SNP [dm3] 2L_5160836_SNP [dm6]	T	C	4.724e^-4	0.919	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi
2L	16670112	2L_16670112_INS [dm3] 2L_16670112_INS [dm6]	C	CTTGCATGGTGGC...	4.740e^-4	0.919	INTRON Trpgamma	TF binding site mE1_TFBS_Kr
2R	7068982	2R_7068982_SNP [dm3] 2R_11181477_SNP [dm6]	C	T	4.745e^-4	0.919	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	1108543	X_1108543_SNP [dm3] X_1214510_SNP [dm6]	T	C	4.750e^-4	0.919	NON_SYNONYMOUS_CODING CG11398 DOWNSTREAM CG3638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15698916	2R_15698916_SNP [dm3] 2R_19811411_SNP [dm6]	C	T	4.752e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22324420	3L_22324420_DEL [dm3] 3L_22331320_DEL [dm6]	ACA	A	4.764e^-4	0.919	DOWNSTREAM CG32450 INTRON Ten-m
3R	18954760	3R_18954760_SNP [dm3] 3R_23129038_SNP [dm6]	C	T	4.769e^-4	0.919	SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	575528	X_575528_INS [dm3] X_681495_INS [dm6]	T	TT	4.776e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	19724179	X_19724179_SNP [dm3] X_19830146_SNP [dm6]	G	C	4.782e^-4	0.919	DOWNSTREAM pico INTERGENIC
2R	6737851	2R_6737851_SNP [dm3] 2R_10850346_SNP [dm6]	T	A	4.790e^-4	0.919	INTRON CG30015
3L	8216041	3L_8216041_SNP [dm3] 3L_8222941_SNP [dm6]	C	A	4.796e^-4	0.919	UTR_3_PRIME CG13678	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3893236	3R_3893236_SNP [dm3] 3R_8067514_SNP [dm6]	A	G	4.798e^-4	0.919	INTRON mAChR-B
3L	10521539	3L_10521539_SNP [dm3] 3L_10528439_SNP [dm6]	T	A	4.803e^-4	0.919	INTRON A2bp1
2L	1365457	2L_1365457_SNP [dm3] 2L_1365457_SNP [dm6]	A	C	4.804e^-4	0.919	INTERGENIC
X	19724190	X_19724190_SNP [dm3] X_19830157_SNP [dm6]	C	T	4.806e^-4	0.919	DOWNSTREAM pico INTERGENIC
3L	7999249	3L_7999249_SNP [dm3] 3L_8006149_SNP [dm6]	C	A	4.807e^-4	0.919	INTRON nmo	TF binding site BDTNP1_TFBS_dl
X	12919176	X_12919176_SNP [dm3] X_13025143_SNP [dm6]	A	C	4.813e^-4	0.919	INTRON rad
3R	16938721	3R_16938721_SNP [dm3] 3R_21112999_SNP [dm6]	G	A	4.815e^-4	0.919	INTRON Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	554772	X_554772_SNP [dm3] X_660739_SNP [dm6]	A	G	4.819e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3139684	X_3139684_SNP [dm3] X_3245651_SNP [dm6]	G	A	4.819e^-4	0.919	SYNONYMOUS_CODING dnc UTR_5_PRIME dnc	TF binding site mE1_TFBS_chinmo
3L	12028027	3L_12028027_SNP [dm3] 3L_12034927_SNP [dm6]	A	C	4.820e^-4	0.919	INTRON rols	TF binding site BDTNP1_TFBS_twi
2R	10554122	2R_10554122_SNP [dm3] 2R_14666617_SNP [dm6]	T	C	4.822e^-4	0.919	SYNONYMOUS_CODING CG12860
2L	12091362	2L_12091362_SNP [dm3] 2L_12091362_SNP [dm6]	G	T	4.833e^-4	0.919	UPSTREAM Pex19 DOWNSTREAM CR44594 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd
2R	18986871	2R_18986871_INS [dm3] 2R_23099348_INS [dm6]	A	ACA	4.836e^-4	0.919	DOWNSTREAM RpL37b INTERGENIC
3L	7906129	3L_7906129_SNP [dm3] 3L_7913029_SNP [dm6]	C	T	4.840e^-4	0.919	SYNONYMOUS_CODING CG8281 DOWNSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3L	9185160	3L_9185160_DEL [dm3] 3L_9192060_DEL [dm6]	TT	T	4.848e^-4	0.919	INTERGENIC
3L	10521411	3L_10521411_SNP [dm3] 3L_10528311_SNP [dm6]	A	T	4.849e^-4	0.919	INTRON A2bp1
3R	2901026	3R_2901026_SNP [dm3] 3R_7075304_SNP [dm6]	G	A	4.851e^-4	0.919	UPSTREAM CG1104 INTRON CG1943	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	15489837	3L_15489837_SNP [dm3] 3L_15496737_SNP [dm6]	G	A	4.853e^-4	0.919	NON_SYNONYMOUS_CODING CG13455	TF binding site mE1_TFBS_cad
3L	9858095	3L_9858095_SNP [dm3] 3L_9864995_SNP [dm6]	C	T	4.855e^-4	0.919	UPSTREAM iPLA2-VIA INTRON CG8108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	9267291	3R_9267291_DEL [dm3] 3R_13441569_DEL [dm6]	CC	C	4.858e^-4	0.919	INTERGENIC
3R	26874328	3R_26874328_DEL [dm3] 3R_31048606_DEL [dm6]	TA	G	4.870e^-4	0.919	UPSTREAM Aph-4 INTERGENIC
X	10778142	X_10778142_SNP [dm3] X_10884109_SNP [dm6]	A	G	4.878e^-4	0.919	INTRON Ork1
2L	1986122	2L_1986122_SNP [dm3] 2L_1986122_SNP [dm6]	A	T	4.891e^-4	0.919	INTRON Got2
X	10843340	X_10843340_INS [dm3] X_10949307_INS [dm6]	G	GG	4.895e^-4	0.919	DOWNSTREAM Rab9Fa INTRON Myo10A
2R	16228603	2R_16228603_SNP [dm3] 2R_20341098_SNP [dm6]	G	T	4.896e^-4	0.919	UPSTREAM CG16739 INTERGENIC
3L	10535999	3L_10535999_SNP [dm3] 3L_10542899_SNP [dm6]	T	G	4.898e^-4	0.919	INTRON A2bp1
X	16652286	X_16652286_DEL [dm3] X_16758253_DEL [dm6]	TGT	T	4.898e^-4	0.919	INTRON if
X	2223361	X_2223361_SNP [dm3] X_2329328_SNP [dm6]	A	G	4.902e^-4	0.919	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
3L	822210	3L_822210_SNP [dm3] 3L_822210_SNP [dm6]	C	T	4.906e^-4	0.919	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13162901	3L_13162901_SNP [dm3] 3L_13169801_SNP [dm6]	T	C	4.906e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	9836325	2L_9836325_SNP [dm3] 2L_9836325_SNP [dm6]	C	A	4.907e^-4	0.919	INTRON nAChRalpha6
3R	27062533	3R_27062533_INS [dm3] 3R_31236811_INS [dm6]	C	CC	4.908e^-4	0.919	UTR_3_PRIME qless
2L	2237648	2L_2237648_SNP [dm3] 2L_2237648_SNP [dm6]	G	T	4.915e^-4	0.919	SYNONYMOUS_CODING Tengl3 UPSTREAM Sec24CD DOWNSTREAM CR44115 & 1 other	TF binding site mE1_TFBS_sens
2L	4818911	2L_4818911_SNP [dm3] 2L_4818911_SNP [dm6]	C	G	4.918e^-4	0.919	UPSTREAM CG3225 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8355200	2L_8355200_SNP [dm3] 2L_8355200_SNP [dm6]	T	C	4.921e^-4	0.919	DOWNSTREAM CG7627 & 1 other INTERGENIC
2L	5511117	2L_5511117_SNP [dm3] 2L_5511117_SNP [dm6]	A	C	4.921e^-4	0.919	INTERGENIC
X	16159266	X_16159266_DEL [dm3] X_16265233_DEL [dm6]	ATCATCAAAATT...	A	4.937e^-4	0.919	UTR_3_PRIME CG12507 DOWNSTREAM CG12507 INTRAGENIC CG12507 INTERGENIC
2L	20767726	2L_20767726_SNP [dm3] 2L_20767726_SNP [dm6]	C	T	4.942e^-4	0.919	UTR_3_PRIME dia DOWNSTREAM dia	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9042700	3L_9042700_SNP [dm3] 3L_9049600_SNP [dm6]	G	A	4.946e^-4	0.919	SYNONYMOUS_CODING Argk DOWNSTREAM CG5144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14271465	2R_14271465_SNP [dm3] 2R_18383960_SNP [dm6]	C	G	4.950e^-4	0.919	START_GAINED IM1 UTR_5_PRIME IM1 UPSTREAM IM23 & 1 other DOWNSTREAM CG15067
3R	12361180	3R_12361180_SNP [dm3] 3R_16535458_SNP [dm6]	G	A	4.951e^-4	0.919	INTRON CG42342
3R	25854830	3R_25854830_SNP [dm3] 3R_30029108_SNP [dm6]	G	A	4.952e^-4	0.919	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14260612	X_14260612_DEL [dm3] X_14366579_DEL [dm6]	TGA	T	4.953e^-4	0.919	INTRON dpr8

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.740e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07834

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.404	0.0407

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1871 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1954145	2L_1954145_SNP [dm3] 2L_1954145_SNP [dm6]	G	A	2.184e^-7	0.41	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7289685	2R_7289685_SNP [dm3] 2R_11402180_SNP [dm6]	A	T	2.345e^-6	0.722	INTERGENIC
2R	1548708	2R_1548708_SNP [dm3] 2R_5661203_SNP [dm6]	A	T	2.450e^-6	0.722	INTRON Not3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22363870	3R_22363870_INS [dm3] 3R_26538148_INS [dm6]	A	AAAATTGGTTAAGAAA...	2.660e^-6	0.722	INTRON scrib
2R	7289662	2R_7289662_SNP [dm3] 2R_11402157_SNP [dm6]	G	A	2.712e^-6	0.722	INTERGENIC
3L	3787061	3L_3787061_SNP [dm3] 3L_3787061_SNP [dm6]	T	A	3.238e^-6	0.722	INTRON CG32264	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7289661	2R_7289661_SNP [dm3] 2R_11402156_SNP [dm6]	G	A	3.355e^-6	0.722	INTERGENIC
2L	10196817	2L_10196817_SNP [dm3] 2L_10196817_SNP [dm6]	G	A	3.552e^-6	0.722	NON_SYNONYMOUS_CODING Sur
X	490193	X_490193_SNP [dm3] X_596160_SNP [dm6]	G	T	3.698e^-6	0.722	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7289795	2R_7289795_SNP [dm3] 2R_11402290_SNP [dm6]	T	G	3.848e^-6	0.722	INTERGENIC
3R	22363877	3R_22363877_SNP [dm3] 3R_26538155_SNP [dm6]	T	A	6.336e^-6	0.902	INTRON scrib
X	19597353	X_19597353_SNP [dm3] X_19703320_SNP [dm6]	C	T	6.413e^-6	0.902	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7289789	2R_7289789_SNP [dm3] 2R_11402284_SNP [dm6]	A	T	7.272e^-6	0.902	INTERGENIC
2R	7289819	2R_7289819_SNP [dm3] 2R_11402314_SNP [dm6]	T	A	7.972e^-6	0.902	INTERGENIC
3R	26617078	3R_26617078_SNP [dm3] 3R_30791356_SNP [dm6]	G	C	8.012e^-6	0.902	SYNONYMOUS_CODING wts DOWNSTREAM mir-1013
3L	12395009	3L_12395009_SNP [dm3] 3L_12401909_SNP [dm6]	C	T	8.184e^-6	0.902	START_GAINED Smyd4 UTR_5_PRIME Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad
3R	9633006	3R_9633006_SNP [dm3] 3R_13807284_SNP [dm6]	C	T	8.839e^-6	0.902	INTERGENIC
3R	8545701	3R_8545701_SNP [dm3] 3R_12719979_SNP [dm6]	A	G	8.952e^-6	0.902	SYNONYMOUS_CODING Men UPSTREAM Men	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14672986	3R_14672986_SNP [dm3] 3R_18847264_SNP [dm6]	G	T	9.141e^-6	0.902	INTRON CG18208
2R	10133755	2R_10133755_SNP [dm3] 2R_14246250_SNP [dm6]	C	A	9.880e^-6	0.927	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
3R	26617138	3R_26617138_SNP [dm3] 3R_30791416_SNP [dm6]	T	C	1.235e^-5	0.979	DOWNSTREAM mir-1013 INTRON wts
3L	13575701	3L_13575701_SNP [dm3] 3L_13582601_SNP [dm6]	G	T	1.247e^-5	0.979	INTRON bru-3
2L	21918567	2L_21918567_SNP [dm3] 2L_21918567_SNP [dm6]	C	T	1.265e^-5	0.979	INTRON CG11634
3L	3787077	3L_3787077_SNP [dm3] 3L_3787077_SNP [dm6]	C	T	1.322e^-5	0.979	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	11734928	X_11734928_SNP [dm3] X_11840895_SNP [dm6]	C	T	1.409e^-5	0.979	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	8407296	3R_8407296_DEL [dm3] 3R_12581574_DEL [dm6]	TC	T	1.480e^-5	0.979	INTRON Octbeta2R
3R	26617141	3R_26617141_SNP [dm3] 3R_30791419_SNP [dm6]	T	A	1.570e^-5	0.979	DOWNSTREAM mir-1013 INTRON wts
3R	26617154	3R_26617154_SNP [dm3] 3R_30791432_SNP [dm6]	G	A	1.643e^-5	0.979	SPLICE_SITE_REGION wts DOWNSTREAM mir-1013 INTRON wts
2R	7605864	2R_7605864_SNP [dm3] 2R_11718359_SNP [dm6]	T	C	1.664e^-5	0.979	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22363597	3R_22363597_SNP [dm3] 3R_26537875_SNP [dm6]	T	A	1.801e^-5	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_dl
3R	22363878	3R_22363878_SNP [dm3] 3R_26538156_SNP [dm6]	T	G	1.838e^-5	0.979	INTRON scrib
3R	4669439	3R_4669439_SNP [dm3] 3R_8843717_SNP [dm6]	A	T	1.848e^-5	0.979	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7289815	2R_7289815_SNP [dm3] 2R_11402310_SNP [dm6]	C	G	1.855e^-5	0.979	INTERGENIC
2L	15650884	2L_15650884_SNP [dm3] 2L_15650884_SNP [dm6]	A	C	1.988e^-5	0.979	NON_SYNONYMOUS_CODING CG4587	TF binding site mE1_TFBS_inv
3R	21610922	3R_21610922_SNP [dm3] 3R_25785200_SNP [dm6]	T	G	1.991e^-5	0.979	INTERGENIC
2L	16571140	2L_16571140_SNP [dm3] 2L_16571140_SNP [dm6]	C	T	2.040e^-5	0.979	INTRON CG42389
2R	11315704	2R_11315704_SNP [dm3] 2R_15428199_SNP [dm6]	T	G	2.138e^-5	0.979	UPSTREAM CG34188 INTRON CG43729
3R	9909155	3R_9909155_SNP [dm3] 3R_14083433_SNP [dm6]	C	A	2.157e^-5	0.979	INTRON foxo
X	5684287	X_5684287_SNP [dm3] X_5790254_SNP [dm6]	T	G	2.190e^-5	0.979	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CG42699 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26617149	3R_26617149_SNP [dm3] 3R_30791427_SNP [dm6]	C	T	2.245e^-5	0.979	DOWNSTREAM mir-1013 INTRON wts
X	11735046	X_11735046_SNP [dm3] X_11841013_SNP [dm6]	T	C	2.398e^-5	0.979	SYNONYMOUS_CODING Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	22363568	3R_22363568_SNP [dm3] 3R_26537846_SNP [dm6]	A	T	2.428e^-5	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_dl
3L	15448628	3L_15448628_SNP [dm3] 3L_15455528_SNP [dm6]	T	C	2.430e^-5	0.979	INTERGENIC
3R	19272078	3R_19272078_SNP [dm3] 3R_23446356_SNP [dm6]	C	T	2.612e^-5	0.979	INTRON CG4374	TF binding site mE1_TFBS_chinmo
3R	15045582	3R_15045582_SNP [dm3] 3R_19219860_SNP [dm6]	T	A	2.884e^-5	0.979	INTRON vib
3R	21610796	3R_21610796_SNP [dm3] 3R_25785074_SNP [dm6]	C	T	2.894e^-5	0.979	INTERGENIC
3R	16949507	3R_16949507_SNP [dm3] 3R_21123785_SNP [dm6]	T	C	2.930e^-5	0.979	INTRON slmb	TF binding site mE1_TFBS_HSA
2R	14043358	2R_14043358_SNP [dm3] 2R_18155853_SNP [dm6]	T	C	3.023e^-5	0.979	INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	22155423	X_22155423_SNP [dm3] X_22753587_SNP [dm6]	T	C	3.058e^-5	0.979	INTRON CR44997	transposable element FlyBase
3R	22376817	3R_22376817_SNP [dm3] 3R_26551095_SNP [dm6]	C	T	3.139e^-5	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7605831	2R_7605831_SNP [dm3] 2R_11718326_SNP [dm6]	T	C	3.165e^-5	0.979	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11734924	X_11734924_SNP [dm3] X_11840891_SNP [dm6]	T	C	3.165e^-5	0.979	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
X	11735019	X_11735019_SNP [dm3] X_11840986_SNP [dm6]	T	C	3.181e^-5	0.979	SYNONYMOUS_CODING Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	19078967	3R_19078967_SNP [dm3] 3R_23253245_SNP [dm6]	A	G	3.262e^-5	0.979	SYNONYMOUS_CODING EloA
2L	10648575	2L_10648575_SNP [dm3] 2L_10648575_SNP [dm6]	C	A	3.365e^-5	0.979	NON_SYNONYMOUS_CODING CG17097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3R	8363723	3R_8363723_SNP [dm3] 3R_12538001_SNP [dm6]	T	G	3.479e^-5	0.979	INTRON Octbeta3R
2L	22114877	2L_22114877_SNP [dm3] 2L_22114877_SNP [dm6]	G	T	3.554e^-5	0.979	INTERGENIC
X	6711495	X_6711495_SNP [dm3] X_6817462_SNP [dm6]	G	A	3.574e^-5	0.979	SYNONYMOUS_CODING iav DOWNSTREAM Nf-YC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13398446	3R_13398446_SNP [dm3] 3R_17572724_SNP [dm6]	G	T	3.637e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22984706	3R_22984706_SNP [dm3] 3R_27158984_SNP [dm6]	G	T	3.665e^-5	0.979	INTRON grass	TF binding site mE1_TFBS_cad
2R	8536720	2R_8536720_SNP [dm3] 2R_12649215_SNP [dm6]	T	G	3.685e^-5	0.979	UPSTREAM CG8785 INTERGENIC
2R	19306398	2R_19306398_SNP [dm3] 2R_23418875_SNP [dm6]	A	G	3.707e^-5	0.979	INTRON CG9812
3R	14683680	3R_14683680_SNP [dm3] 3R_18857958_SNP [dm6]	T	C	3.789e^-5	0.979	INTERGENIC
3R	22363675	3R_22363675_SNP [dm3] 3R_26537953_SNP [dm6]	C	A	3.898e^-5	0.979	INTRON scrib
3L	13321297	3L_13321297_SNP [dm3] 3L_13328197_SNP [dm6]	G	A	3.899e^-5	0.979	UPSTREAM CG14113 INTERGENIC
3R	23549304	3R_23549304_SNP [dm3] 3R_27723582_SNP [dm6]	T	C	3.989e^-5	0.979	INTERGENIC
2L	12855134	2L_12855134_SNP [dm3] 2L_12855134_SNP [dm6]	T	C	4.100e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24028078	3R_24028078_INS [dm3] 3R_28202356_INS [dm6]	T	TTACT	4.234e^-5	0.979	INTRON CG34354
3R	8363754	3R_8363754_SNP [dm3] 3R_12538032_SNP [dm6]	T	A	4.242e^-5	0.979	INTRON Octbeta3R
2L	439086	2L_439086_SNP [dm3] 2L_439086_SNP [dm6]	G	A	4.362e^-5	0.979	UPSTREAM CR43717 INTRON ex
X	19597298	X_19597298_SNP [dm3] X_19703265_SNP [dm6]	A	G	4.414e^-5	0.979	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14585924	2R_14585924_SNP [dm3] 2R_18698419_SNP [dm6]	C	T	4.527e^-5	0.979	INTRON Sik3
3R	26496217	3R_26496217_SNP [dm3] 3R_30670495_SNP [dm6]	C	A	4.544e^-5	0.979	INTERGENIC
2L	12643663	2L_12643663_SNP [dm3] 2L_12643663_SNP [dm6]	A	C	4.592e^-5	0.979	INTRON Ref2
2R	8567640	2R_8567640_SNP [dm3] 2R_12680135_SNP [dm6]	C	A	4.601e^-5	0.979	SYNONYMOUS_CODING CG8771 UPSTREAM CG42708
2L	1948750	2L_1948750_SNP [dm3] 2L_1948750_SNP [dm6]	T	A	4.668e^-5	0.979	INTERGENIC	regulatory region REDfly_CRMs
3L	13358275	3L_13358275_SNP [dm3] 3L_13365175_SNP [dm6]	G	A	4.745e^-5	0.979	INTERGENIC
X	19597283	X_19597283_SNP [dm3] X_19703250_SNP [dm6]	G	T	4.913e^-5	0.979	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8545974	3R_8545974_SNP [dm3] 3R_12720252_SNP [dm6]	T	A	5.068e^-5	0.979	UPSTREAM Men INTRON Men	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8529996	3L_8529996_SNP [dm3] 3L_8536896_SNP [dm6]	C	G	5.251e^-5	0.979	NON_SYNONYMOUS_CODING ergic53
3R	8363828	3R_8363828_SNP [dm3] 3R_12538106_SNP [dm6]	C	G	5.285e^-5	0.979	INTRON Octbeta3R
3L	2663223	3L_2663223_SNP [dm3] 3L_2663223_SNP [dm6]	T	C	5.300e^-5	0.979	SYNONYMOUS_CODING CG33234 INTRON Fife
2L	10933703	2L_10933703_SNP [dm3] 2L_10933703_SNP [dm6]	T	A	5.415e^-5	0.979	INTRON dpr2
2R	17797699	2R_17797699_SNP [dm3] 2R_21910194_SNP [dm6]	A	G	5.459e^-5	0.979	INTRON Fili
3R	22376014	3R_22376014_SNP [dm3] 3R_26550292_SNP [dm6]	A	G	5.477e^-5	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7289694	2R_7289694_SNP [dm3] 2R_11402189_SNP [dm6]	T	C	5.699e^-5	0.979	INTERGENIC
3R	8364009	3R_8364009_SNP [dm3] 3R_12538287_SNP [dm6]	T	G	5.717e^-5	0.979	INTRON Octbeta3R
3R	8525744	3R_8525744_SNP [dm3] 3R_12700022_SNP [dm6]	C	T	5.755e^-5	0.979	INTRON Past1
2L	7358793	2L_7358793_SNP [dm3] 2L_7358793_SNP [dm6]	C	T	5.845e^-5	0.979	INTERGENIC
X	490285	X_490285_SNP [dm3] X_596252_SNP [dm6]	A	C	5.850e^-5	0.979	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18032140	3L_18032140_SNP [dm3] 3L_18039040_SNP [dm6]	A	G	5.857e^-5	0.979	INTRON Eip75B
2L	12256688	2L_12256688_SNP [dm3] 2L_12256688_SNP [dm6]	G	C	6.074e^-5	0.979	INTRON aret
2R	7284662	2R_7284662_DEL [dm3] 2R_11397157_DEL [dm6]	TT	A	6.114e^-5	0.979	UTR_5_PRIME sprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8407397	3R_8407397_SNP [dm3] 3R_12581675_SNP [dm6]	A	T	6.118e^-5	0.979	INTRON Octbeta2R
3L	9622447	3L_9622447_SNP [dm3] 3L_9629347_SNP [dm6]	A	G	6.301e^-5	0.979	UPSTREAM CG8336 & 1 other INTRON CG8336
2L	17297799	2L_17297799_SNP [dm3] 2L_17297799_SNP [dm6]	T	C	6.327e^-5	0.979	INTERGENIC
2L	17293208	2L_17293208_SNP [dm3] 2L_17293208_SNP [dm6]	C	T	6.343e^-5	0.979	INTERGENIC
2L	3303545	2L_3303545_SNP [dm3] 2L_3303545_SNP [dm6]	G	A	6.579e^-5	0.979	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3303550	2L_3303550_SNP [dm3] 2L_3303550_SNP [dm6]	C	T	6.579e^-5	0.979	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26895751	3R_26895751_INS [dm3] 3R_31070029_INS [dm6]	C	CT	6.621e^-5	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	6.643e^-5	0.979	INTRON sls
3R	27479830	3R_27479830_SNP [dm3] 3R_31654108_SNP [dm6]	G	A	6.648e^-5	0.979	INTRON kek6
2L	10793873	2L_10793873_INS [dm3] 2L_10793873_INS [dm6]	A	ATA	6.650e^-5	0.979	INTRON CG31869
3R	24679695	3R_24679695_SNP [dm3] 3R_28853973_SNP [dm6]	T	A	6.700e^-5	0.979	UTR_3_PRIME Inx3 DOWNSTREAM Inx3 INTRON spg
3R	23437440	3R_23437440_SNP [dm3] 3R_27611718_SNP [dm6]	T	C	6.715e^-5	0.979	INTRON Tusp	TF binding site mE1_TFBS_HSA
3L	18032159	3L_18032159_SNP [dm3] 3L_18039059_SNP [dm6]	T	C	6.716e^-5	0.979	INTRON Eip75B
2L	2473735	2L_2473735_SNP [dm3] 2L_2473735_SNP [dm6]	A	T	6.790e^-5	0.979	UPSTREAM CR45286 INTERGENIC	regulatory region REDfly_CRMs
3R	8545829	3R_8545829_SNP [dm3] 3R_12720107_SNP [dm6]	C	T	6.805e^-5	0.979	UPSTREAM Men INTRON Men	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1553830	2R_1553830_SNP [dm3] 2R_5666325_SNP [dm6]	C	A	6.809e^-5	0.979	DOWNSTREAM CR45472 INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	10626481	2R_10626481_SNP [dm3] 2R_14738976_SNP [dm6]	A	C	6.839e^-5	0.979	DOWNSTREAM CG12858 EXON CR43428	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11163193	2L_11163193_MNP [dm3] 2L_11163193_MNP [dm6]	GAAT	TGTC	6.856e^-5	0.979	INTRON Ca-beta
2L	17293174	2L_17293174_SNP [dm3] 2L_17293174_SNP [dm6]	T	A	6.938e^-5	0.979	UPSTREAM CG6380 INTERGENIC
3R	3902790	3R_3902790_SNP [dm3] 3R_8077068_SNP [dm6]	A	C	6.996e^-5	0.979	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11762974	X_11762974_SNP [dm3] X_11868941_SNP [dm6]	T	C	6.996e^-5	0.979	UPSTREAM CG1847 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	2356102	3L_2356102_DEL [dm3] 3L_2356102_DEL [dm6]	GGCTG	G	7.002e^-5	0.979	INTERGENIC
3L	2354782	3L_2354782_SNP [dm3] 3L_2354782_SNP [dm6]	A	G	7.133e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19741723	3R_19741723_SNP [dm3] 3R_23916001_SNP [dm6]	T	G	7.167e^-5	0.979	INTRON sba
3R	3902807	3R_3902807_SNP [dm3] 3R_8077085_SNP [dm6]	G	T	7.196e^-5	0.979	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15448405	3L_15448405_SNP [dm3] 3L_15455305_SNP [dm6]	C	T	7.233e^-5	0.979	INTERGENIC
3L	18032012	3L_18032012_SNP [dm3] 3L_18038912_SNP [dm6]	A	C	7.285e^-5	0.979	INTRON Eip75B
3R	26332057	3R_26332057_SNP [dm3] 3R_30506335_SNP [dm6]	G	C	7.388e^-5	0.979	NON_SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
3R	16983791	3R_16983791_SNP [dm3] 3R_21158069_SNP [dm6]	C	T	7.411e^-5	0.979	INTRON SNF4Agamma
3R	26898189	3R_26898189_SNP [dm3] 3R_31072467_SNP [dm6]	T	C	7.422e^-5	0.979	INTRON Sox100B
2R	5793959	2R_5793959_SNP [dm3] 2R_9906454_SNP [dm6]	T	C	7.425e^-5	0.979	INTRON FMRFa
2L	11163201	2L_11163201_MNP [dm3] 2L_11163201_MNP [dm6]	CCC	TGT	7.463e^-5	0.979	INTRON Ca-beta
3L	14942608	3L_14942608_SNP [dm3] 3L_14949508_SNP [dm6]	A	G	7.696e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14942609	3L_14942609_SNP [dm3] 3L_14949509_SNP [dm6]	T	A	7.696e^-5	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3495361	2L_3495361_SNP [dm3] 2L_3495361_SNP [dm6]	T	A	7.757e^-5	0.979	INTRON tim
2L	9402487	2L_9402487_SNP [dm3] 2L_9402487_SNP [dm6]	C	A	7.801e^-5	0.979	INTRON Shawl
3R	25465277	3R_25465277_DEL [dm3] 3R_29639555_DEL [dm6]	TAATGGGGAAAGTAA...	T	7.804e^-5	0.979	INTRON Dop1R2
2L	16386362	2L_16386362_SNP [dm3] 2L_16386362_SNP [dm6]	A	C	7.817e^-5	0.979	INTERGENIC
2L	9164782	2L_9164782_SNP [dm3] 2L_9164782_SNP [dm6]	T	C	7.900e^-5	0.979	SYNONYMOUS_CODING CG13108 DOWNSTREAM CG9586	TF binding site mE1_TFBS_cad
2L	9990432	2L_9990432_SNP [dm3] 2L_9990432_SNP [dm6]	A	T	7.938e^-5	0.979	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6243989	2L_6243989_SNP [dm3] 2L_6243989_SNP [dm6]	A	T	8.007e^-5	0.979	INTERGENIC
3L	9230860	3L_9230860_SNP [dm3] 3L_9237760_SNP [dm6]	A	T	8.046e^-5	0.979	INTERGENIC
3L	1326755	3L_1326755_SNP [dm3] 3L_1326755_SNP [dm6]	T	C	8.126e^-5	0.979	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1621068	2L_1621068_SNP [dm3] 2L_1621068_SNP [dm6]	G	A	8.159e^-5	0.979	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16875384	3R_16875384_SNP [dm3] 3R_21049662_SNP [dm6]	T	C	8.160e^-5	0.979	UPSTREAM CG7079 DOWNSTREAM CG17279 INTERGENIC
3L	2633692	3L_2633692_SNP [dm3] 3L_2633692_SNP [dm6]	T	C	8.175e^-5	0.979	SYNONYMOUS_CODING CG42245 UTR_5_PRIME MEP-1	TF binding site BDTNP1_TFBS_dl
2L	11951357	2L_11951357_SNP [dm3] 2L_11951357_SNP [dm6]	G	A	8.193e^-5	0.979	DOWNSTREAM CR43314 INTERGENIC
2R	9271220	2R_9271220_SNP [dm3] 2R_13383715_SNP [dm6]	G	C	8.245e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15779227	2L_15779227_SNP [dm3] 2L_15779227_SNP [dm6]	C	T	8.249e^-5	0.979	INTERGENIC
3R	21610809	3R_21610809_SNP [dm3] 3R_25785087_SNP [dm6]	G	C	8.339e^-5	0.979	INTERGENIC
X	1931084	X_1931084_SNP [dm3] X_2037051_SNP [dm6]	T	A	8.409e^-5	0.979	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11951342	2L_11951342_SNP [dm3] 2L_11951342_SNP [dm6]	A	C	8.478e^-5	0.979	DOWNSTREAM CR43314 INTERGENIC
3L	10784964	3L_10784964_SNP [dm3] 3L_10791864_SNP [dm6]	C	T	8.533e^-5	0.979	INTERGENIC
3R	24010146	3R_24010146_SNP [dm3] 3R_28184424_SNP [dm6]	C	A	8.554e^-5	0.979	INTRON CG34354
3R	21125884	3R_21125884_SNP [dm3] 3R_25300162_SNP [dm6]	G	A	8.556e^-5	0.979	UPSTREAM CG31288 & 1 other INTERGENIC
2R	12276490	2R_12276490_SNP [dm3] 2R_16388985_SNP [dm6]	A	G	8.673e^-5	0.979	INTRON Sema-2b
3R	25692153	3R_25692153_SNP [dm3] 3R_29866431_SNP [dm6]	G	T	8.712e^-5	0.979	UPSTREAM Zip99C INTRON Zip99C
X	14012389	X_14012389_SNP [dm3] X_14118356_SNP [dm6]	T	A	8.758e^-5	0.979	UPSTREAM tRNA:S7:12Eg INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11528207	2L_11528207_SNP [dm3] 2L_11528207_SNP [dm6]	A	G	8.807e^-5	0.979	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
3L	18032158	3L_18032158_SNP [dm3] 3L_18039058_SNP [dm6]	C	T	8.846e^-5	0.979	INTRON Eip75B
2R	14585971	2R_14585971_SNP [dm3] 2R_18698466_SNP [dm6]	G	T	8.865e^-5	0.979	INTRON Sik3
3L	16434971	3L_16434971_SNP [dm3] 3L_16441871_SNP [dm6]	G	T	8.977e^-5	0.979	INTRON CG33158 & 1 other
3L	9622111	3L_9622111_SNP [dm3] 3L_9629011_SNP [dm6]	C	G	9.112e^-5	0.979	UPSTREAM CG8336 INTRON CG8336 & 1 other
X	5979599	X_5979599_SNP [dm3] X_6085566_SNP [dm6]	C	A	9.132e^-5	0.979	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11145766	2L_11145766_SNP [dm3] 2L_11145766_SNP [dm6]	A	G	9.164e^-5	0.979	UPSTREAM CG31867 INTRON Gyc32E
3L	10597832	3L_10597832_SNP [dm3] 3L_10604732_SNP [dm6]	T	C	9.184e^-5	0.979	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3102151	3L_3102151_SNP [dm3] 3L_3102151_SNP [dm6]	G	T	9.394e^-5	0.979	INTRON Cht7
2L	17297606	2L_17297606_INS [dm3] 2L_17297606_INS [dm6]	A	ATGTATACAGGTTAA...	9.448e^-5	0.979	INTERGENIC
2R	1422954	2R_1422954_DEL [dm3] 2R_5535449_DEL [dm6]	AGTCTTCTTTCATGCATCTC...	A	9.528e^-5	0.979	INTRON CG30438	transposable element FlyBase
2R	11690475	2R_11690475_SNP [dm3] 2R_15802970_SNP [dm6]	C	A	9.593e^-5	0.979	INTRON Zasp52 & 1 other
3R	14297558	3R_14297558_SNP [dm3] 3R_18471836_SNP [dm6]	C	T	9.603e^-5	0.979	INTRON fru
3R	21611778	3R_21611778_SNP [dm3] 3R_25786056_SNP [dm6]	C	T	9.617e^-5	0.979	DOWNSTREAM CG4960 INTERGENIC
2L	22114740	2L_22114740_SNP [dm3] 2L_22114740_SNP [dm6]	C	T	9.699e^-5	0.979	INTERGENIC	transposable element FlyBase
3R	26635037	3R_26635037_SNP [dm3] 3R_30809315_SNP [dm6]	A	C	9.784e^-5	0.979	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24007593	3R_24007593_SNP [dm3] 3R_28181871_SNP [dm6]	C	A	9.884e^-5	0.979	INTRON CG34354
X	6711393	X_6711393_SNP [dm3] X_6817360_SNP [dm6]	T	C	9.959e^-5	0.979	SYNONYMOUS_CODING iav DOWNSTREAM Nf-YC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22114940	2L_22114940_SNP [dm3] 2L_22114940_SNP [dm6]	T	C	9.994e^-5	0.979	INTERGENIC
2L	12855603	2L_12855603_SNP [dm3] 2L_12855603_SNP [dm6]	T	A	1.003e^-4	0.979	INTERGENIC
2L	16571130	2L_16571130_SNP [dm3] 2L_16571130_SNP [dm6]	A	G	1.013e^-4	0.979	INTRON CG42389
2L	2620858	2L_2620858_SNP [dm3] 2L_2620858_SNP [dm6]	G	C	1.017e^-4	0.979	DOWNSTREAM CG43403 INTERGENIC
3L	13575932	3L_13575932_SNP [dm3] 3L_13582832_SNP [dm6]	C	T	1.019e^-4	0.979	INTRON bru-3
3L	13871573	3L_13871573_SNP [dm3] 3L_13878473_SNP [dm6]	A	T	1.022e^-4	0.979	UPSTREAM CG13737 INTRON dysc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10648936	2L_10648936_SNP [dm3] 2L_10648936_SNP [dm6]	C	G	1.029e^-4	0.979	SYNONYMOUS_CODING CG17097
2L	3391578	2L_3391578_SNP [dm3] 2L_3391578_SNP [dm6]	A	G	1.030e^-4	0.979	INTERGENIC
2L	21355263	2L_21355263_DEL [dm3] 2L_21355263_DEL [dm6]	ACCTAA	A	1.038e^-4	0.979	INTRON Tsp39D
X	493827	X_493827_SNP [dm3] X_599794_SNP [dm6]	C	G	1.040e^-4	0.979	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7146058	3L_7146058_SNP [dm3] 3L_7152958_SNP [dm6]	T	C	1.046e^-4	0.979	INTRON corn
2L	6408513	2L_6408513_SNP [dm3] 2L_6408513_SNP [dm6]	T	C	1.046e^-4	0.979	UTR_5_PRIME CG42368
2L	11234446	2L_11234446_INS [dm3] 2L_11234446_INS [dm6]	G	GTG	1.050e^-4	0.979	UPSTREAM snoRNA:Me18S-G642 & 1 other INTRON ab	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	19198879	2R_19198879_SNP [dm3] 2R_23311356_SNP [dm6]	C	G	1.051e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9423695	3R_9423695_SNP [dm3] 3R_13597973_SNP [dm6]	A	G	1.053e^-4	0.979	INTERGENIC
3R	19078970	3R_19078970_SNP [dm3] 3R_23253248_SNP [dm6]	T	C	1.064e^-4	0.979	SYNONYMOUS_CODING EloA
2L	11163189	2L_11163189_DEL [dm3] 2L_11163189_DEL [dm6]	TTG	C	1.070e^-4	0.979	INTRON Ca-beta
X	490213	X_490213_SNP [dm3] X_596180_SNP [dm6]	C	G	1.081e^-4	0.979	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21127094	3R_21127094_SNP [dm3] 3R_25301372_SNP [dm6]	T	C	1.094e^-4	0.979	SYNONYMOUS_CODING CG13659
3R	26897786	3R_26897786_SNP [dm3] 3R_31072064_SNP [dm6]	T	C	1.097e^-4	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26895754	3R_26895754_SNP [dm3] 3R_31070032_SNP [dm6]	A	C	1.099e^-4	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
X	3232834	X_3232834_SNP [dm3] X_3338801_SNP [dm6]	C	T	1.105e^-4	0.979	SYNONYMOUS_CODING dnc INTRON CR44886
3R	16945548	3R_16945548_SNP [dm3] 3R_21119826_SNP [dm6]	A	T	1.117e^-4	0.979	UTR_3_PRIME slmb UPSTREAM Bdbt DOWNSTREAM slmb	TF binding site mE1_TFBS_HSA
2R	11001637	2R_11001637_SNP [dm3] 2R_15114132_SNP [dm6]	T	A	1.117e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21612474	3R_21612474_SNP [dm3] 3R_25786752_SNP [dm6]	C	T	1.123e^-4	0.979	SYNONYMOUS_CODING CG4960
3R	22376729	3R_22376729_DEL [dm3] 3R_26551007_DEL [dm6]	AA	A	1.124e^-4	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi
3R	14673021	3R_14673021_SNP [dm3] 3R_18847299_SNP [dm6]	A	T	1.126e^-4	0.979	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11879465	3L_11879465_SNP [dm3] 3L_11886365_SNP [dm6]	G	T	1.127e^-4	0.979	DOWNSTREAM CG5897 INTRON CG44837
3R	23437402	3R_23437402_SNP [dm3] 3R_27611680_SNP [dm6]	A	T	1.152e^-4	0.979	INTRON Tusp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19324326	3L_19324326_SNP [dm3] 3L_19331226_SNP [dm6]	G	T	1.158e^-4	0.979	INTRON pip	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12114374	2R_12114374_SNP [dm3] 2R_16226869_SNP [dm6]	A	T	1.165e^-4	0.979	UPSTREAM CG15706 INTRON CG15706 & 1 other
3R	21145810	3R_21145810_DEL [dm3] 3R_25320088_DEL [dm6]	TACTT	T	1.170e^-4	0.979	UTR_5_PRIME CG10560 DOWNSTREAM CG10562
3L	9602219	3L_9602219_SNP [dm3] 3L_9609119_SNP [dm6]	A	G	1.185e^-4	0.979	SYNONYMOUS_CODING CG3280
2L	10196465	2L_10196465_SNP [dm3] 2L_10196465_SNP [dm6]	T	C	1.198e^-4	0.979	INTRON Sur
3R	8363784	3R_8363784_DEL [dm3] 3R_12538062_DEL [dm6]	AGGGGTTTAACTA...	A	1.207e^-4	0.979	INTRON Octbeta3R
2R	1422949	2R_1422949_SNP [dm3] 2R_5535444_SNP [dm6]	C	T	1.209e^-4	0.979	INTRON CG30438	transposable element FlyBase
X	2610896	X_2610896_SNP [dm3] X_2716863_SNP [dm6]	T	A	1.211e^-4	0.979	NON_SYNONYMOUS_CODING CG2694 DOWNSTREAM CG2701	TF binding site mE1_TFBS_chinmo
2L	10555243	2L_10555243_SNP [dm3] 2L_10555243_SNP [dm6]	G	A	1.215e^-4	0.979	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11477518	2L_11477518_INS [dm3] 2L_11477518_INS [dm6]	G	GG	1.222e^-4	0.979	INTERGENIC
2L	1948749	2L_1948749_SNP [dm3] 2L_1948749_SNP [dm6]	A	G	1.222e^-4	0.979	INTERGENIC	regulatory region REDfly_CRMs
2L	10933708	2L_10933708_DEL [dm3] 2L_10933708_DEL [dm6]	TAA	T	1.224e^-4	0.979	INTRON dpr2
3L	1003101	3L_1003101_DEL [dm3] 3L_1003101_DEL [dm6]	ATGCTCTCCGTTCATTACAG...	A	1.246e^-4	0.979	INTRON trio
2L	10015135	2L_10015135_SNP [dm3] 2L_10015135_SNP [dm6]	G	C	1.250e^-4	0.979	NON_SYNONYMOUS_CODING CG13131	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5643168	3L_5643168_SNP [dm3] 3L_5650068_SNP [dm6]	C	A	1.253e^-4	0.979	UTR_3_PRIME Blimp-1
3L	18032257	3L_18032257_SNP [dm3] 3L_18039157_SNP [dm6]	G	A	1.255e^-4	0.979	INTRON Eip75B
X	11734907	X_11734907_SNP [dm3] X_11840874_SNP [dm6]	T	G	1.256e^-4	0.979	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2L	4700166	2L_4700166_SNP [dm3] 2L_4700166_SNP [dm6]	C	G	1.267e^-4	0.979	DOWNSTREAM Taf12L INTRON CG34351
3R	26496219	3R_26496219_INS [dm3] 3R_30670497_INS [dm6]	G	GG	1.270e^-4	0.979	INTERGENIC
3R	23921134	3R_23921134_SNP [dm3] 3R_28095412_SNP [dm6]	G	A	1.276e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6830952	2L_6830952_SNP [dm3] 2L_6830952_SNP [dm6]	A	G	1.280e^-4	0.979	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7358751	2L_7358751_SNP [dm3] 2L_7358751_SNP [dm6]	G	A	1.283e^-4	0.979	INTERGENIC
3R	12057127	3R_12057127_SNP [dm3] 3R_16231405_SNP [dm6]	T	C	1.307e^-4	0.979	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	4726312	2L_4726312_SNP [dm3] 2L_4726312_SNP [dm6]	G	T	1.310e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22376785	3R_22376785_INS [dm3] 3R_26551063_INS [dm6]	A	AGTATA	1.311e^-4	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	723006	2L_723006_SNP [dm3] 2L_723006_SNP [dm6]	C	T	1.311e^-4	0.979	INTERGENIC
2L	723019	2L_723019_SNP [dm3] 2L_723019_SNP [dm6]	G	A	1.311e^-4	0.979	INTERGENIC
3L	6475861	3L_6475861_DEL [dm3] 3L_6482761_DEL [dm6]	CTT	C	1.315e^-4	0.979	INTRON CG42747	TF binding site mE1_TFBS_inv
2L	10933694	2L_10933694_SNP [dm3] 2L_10933694_SNP [dm6]	C	A	1.316e^-4	0.979	INTRON dpr2
3R	20569722	3R_20569722_SNP [dm3] 3R_24744000_SNP [dm6]	C	T	1.319e^-4	0.979	SPLICE_SITE_REGION tok INTRON tok	TF binding site mE1_TFBS_cad
2L	12257147	2L_12257147_SNP [dm3] 2L_12257147_SNP [dm6]	G	T	1.323e^-4	0.979	INTRON aret
2L	10933656	2L_10933656_DEL [dm3] 2L_10933656_DEL [dm6]	AAA	A	1.324e^-4	0.979	INTRON dpr2
3R	16949436	3R_16949436_SNP [dm3] 3R_21123714_SNP [dm6]	C	T	1.325e^-4	0.979	INTRON slmb	TF binding site mE1_TFBS_HSA
2L	17293175	2L_17293175_SNP [dm3] 2L_17293175_SNP [dm6]	A	C	1.327e^-4	0.979	UPSTREAM CG6380 INTERGENIC
2L	17112271	2L_17112271_SNP [dm3] 2L_17112271_SNP [dm6]	C	T	1.335e^-4	0.979	INTERGENIC
2L	1111784	2L_1111784_SNP [dm3] 2L_1111784_SNP [dm6]	A	G	1.353e^-4	0.979	SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo
X	13033425	X_13033425_SNP [dm3] X_13139392_SNP [dm6]	T	A	1.363e^-4	0.979	UTR_5_PRIME CG32645	TF binding site mE1_TFBS_HSA
3R	22025521	3R_22025521_SNP [dm3] 3R_26199799_SNP [dm6]	T	C	1.364e^-4	0.979	INTRON CR44320
2L	11234433	2L_11234433_SNP [dm3] 2L_11234433_SNP [dm6]	A	T	1.365e^-4	0.979	UPSTREAM snoRNA:Me18S-G642 & 1 other INTRON ab	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	5796894	3L_5796894_SNP [dm3] 3L_5803794_SNP [dm6]	A	C	1.380e^-4	0.979	UTR_5_PRIME CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_twi
X	512059	X_512059_DEL [dm3] X_618026_DEL [dm6]	CACTACAAAATTCCATCAG...	T	1.380e^-4	0.979	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	23437399	3R_23437399_SNP [dm3] 3R_27611677_SNP [dm6]	T	A	1.381e^-4	0.979	INTRON Tusp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2413733	3L_2413733_SNP [dm3] 3L_2413733_SNP [dm6]	T	A	1.382e^-4	0.979	UPSTREAM CG45186 INTRON CG45186
2R	11315900	2R_11315900_SNP [dm3] 2R_15428395_SNP [dm6]	A	G	1.382e^-4	0.979	UPSTREAM CG34188 INTRON CG43729
3R	14729019	3R_14729019_SNP [dm3] 3R_18903297_SNP [dm6]	G	A	1.382e^-4	0.979	UPSTREAM CG34284 INTERGENIC
3R	23380607	3R_23380607_SNP [dm3] 3R_27554885_SNP [dm6]	T	C	1.386e^-4	0.979	INTRON Klp98A
2R	5103701	2R_5103701_SNP [dm3] 2R_9216196_SNP [dm6]	G	T	1.389e^-4	0.979	INTERGENIC
2L	393678	2L_393678_INS [dm3] 2L_393678_INS [dm6]	A	ACCATTGGTTTAAGA...	1.389e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26897709	3R_26897709_SNP [dm3] 3R_31071987_SNP [dm6]	C	T	1.413e^-4	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11951355	2L_11951355_SNP [dm3] 2L_11951355_SNP [dm6]	C	A	1.419e^-4	0.979	DOWNSTREAM CR43314 INTERGENIC
X	5617037	X_5617037_SNP [dm3] X_5723004_SNP [dm6]	C	A	1.433e^-4	0.979	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad
2R	10114106	2R_10114106_SNP [dm3] 2R_14226601_SNP [dm6]	C	A	1.445e^-4	0.979	INTRON CG8468
X	5684065	X_5684065_SNP [dm3] X_5790032_SNP [dm6]	T	C	1.447e^-4	0.979	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CG42699 & 1 other	TF binding site mE1_TFBS_cad
2L	11145633	2L_11145633_SNP [dm3] 2L_11145633_SNP [dm6]	G	A	1.447e^-4	0.979	UPSTREAM CG31867 INTRON Gyc32E
X	4234334	X_4234334_SNP [dm3] X_4340301_SNP [dm6]	G	A	1.451e^-4	0.979	INTRON norpA
3L	11925869	3L_11925869_SNP [dm3] 3L_11932769_SNP [dm6]	T	A	1.454e^-4	0.979	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23670351	3R_23670351_SNP [dm3] 3R_27844629_SNP [dm6]	C	T	1.454e^-4	0.979	UPSTREAM Or98P INTRON CG34353
2L	12251147	2L_12251147_SNP [dm3] 2L_12251147_SNP [dm6]	C	T	1.465e^-4	0.979	INTRON aret
3R	26897917	3R_26897917_SNP [dm3] 3R_31072195_SNP [dm6]	A	G	1.467e^-4	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17550736	2R_17550736_SNP [dm3] 2R_21663231_SNP [dm6]	C	T	1.477e^-4	0.979	UPSTREAM pirk & 2 others EXON CR44748
2R	7289866	2R_7289866_SNP [dm3] 2R_11402361_SNP [dm6]	T	G	1.479e^-4	0.979	INTERGENIC
2L	22035258	2L_22035258_DEL [dm3] 2L_22035258_DEL [dm6]	GCGATCCCAGCTCGACGTAC...	TG	1.479e^-4	0.979	INTERGENIC
3R	26268292	3R_26268292_SNP [dm3] 3R_30442570_SNP [dm6]	C	T	1.483e^-4	0.979	INTRON CG15537
X	512081	X_512081_DEL [dm3] X_618048_DEL [dm6]	CGCCCAGTTG	C	1.492e^-4	0.979	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	2396996	2L_2396996_SNP [dm3] 2L_2396996_SNP [dm6]	G	C	1.493e^-4	0.979	INTRON VGlut
X	8184377	X_8184377_SNP [dm3] X_8290344_SNP [dm6]	C	T	1.512e^-4	0.979	INTRON nAChRalpha3
3R	22371994	3R_22371994_DEL [dm3] 3R_26546272_DEL [dm6]	TAT	T	1.516e^-4	0.979	INTRON scrib
X	18276422	X_18276422_SNP [dm3] X_18382389_SNP [dm6]	G	T	1.525e^-4	0.979	SYNONYMOUS_CODING betaCOP DOWNSTREAM CG6179	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16386401	2L_16386401_SNP [dm3] 2L_16386401_SNP [dm6]	T	C	1.530e^-4	0.979	INTERGENIC
3R	25899196	3R_25899196_SNP [dm3] 3R_30073474_SNP [dm6]	C	T	1.532e^-4	0.979	INTRON sima	TF binding site mE1_TFBS_chinmo
2R	9344914	2R_9344914_SNP [dm3] 2R_13457409_SNP [dm6]	T	C	1.546e^-4	0.979	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14757973	3R_14757973_SNP [dm3] 3R_18932251_SNP [dm6]	A	G	1.556e^-4	0.979	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2659602	2L_2659602_SNP [dm3] 2L_2659602_SNP [dm6]	G	T	1.558e^-4	0.979	INTERGENIC
2L	4726298	2L_4726298_SNP [dm3] 2L_4726298_SNP [dm6]	T	C	1.558e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4384330	3L_4384330_DEL [dm3] 3L_4384330_DEL [dm6]	CGGAGTGTTC	C	1.563e^-4	0.979	UPSTREAM slow INTERGENIC
2L	5861617	2L_5861617_SNP [dm3] 2L_5861617_SNP [dm6]	G	A	1.567e^-4	0.979	INTRON rau	TF binding site mE1_TFBS_cad
X	11734890	X_11734890_SNP [dm3] X_11840857_SNP [dm6]	C	T	1.569e^-4	0.979	SPLICE_SITE_REGION Cyp28c1 INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	4588997	3R_4588997_SNP [dm3] 3R_8763275_SNP [dm6]	A	C	1.571e^-4	0.979	INTRON CG11768 & 1 other
3L	9627046	3L_9627046_SNP [dm3] 3L_9633946_SNP [dm6]	G	A	1.578e^-4	0.979	INTRON fry	TF binding site mE1_TFBS_cad
2R	14704092	2R_14704092_SNP [dm3] 2R_18816587_SNP [dm6]	C	T	1.587e^-4	0.979	UPSTREAM CG15096 DOWNSTREAM CR43418 INTERGENIC
3L	3183841	3L_3183841_SNP [dm3] 3L_3183841_SNP [dm6]	A	G	1.588e^-4	0.979	UPSTREAM CG42494 INTRON Girdin
2R	11690484	2R_11690484_SNP [dm3] 2R_15802979_SNP [dm6]	G	A	1.592e^-4	0.979	INTRON Zasp52 & 1 other
3R	22094057	3R_22094057_SNP [dm3] 3R_26268335_SNP [dm6]	T	A	1.596e^-4	0.979	INTRON CG6154
X	5684113	X_5684113_SNP [dm3] X_5790080_SNP [dm6]	A	G	1.601e^-4	0.979	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CG42699 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	984381	3L_984381_SNP [dm3] 3L_984381_SNP [dm6]	A	C	1.621e^-4	0.979	UTR_3_PRIME Glut1 INTRON Glut1
2L	723049	2L_723049_SNP [dm3] 2L_723049_SNP [dm6]	A	G	1.623e^-4	0.979	INTERGENIC
2R	9215243	2R_9215243_SNP [dm3] 2R_13327738_SNP [dm6]	T	C	1.627e^-4	0.979	INTERGENIC
2L	15415333	2L_15415333_SNP [dm3] 2L_15415333_SNP [dm6]	C	T	1.631e^-4	0.979	INTERGENIC
3L	16242477	3L_16242477_INS [dm3] 3L_16249377_INS [dm6]	G	GTGGAGATAAAA...	1.634e^-4	0.979	DOWNSTREAM CG13055 INTERGENIC
3L	6475872	3L_6475872_SNP [dm3] 3L_6482772_SNP [dm6]	C	G	1.635e^-4	0.979	INTRON CG42747	TF binding site mE1_TFBS_inv
2L	3408178	2L_3408178_SNP [dm3] 2L_3408178_SNP [dm6]	A	G	1.647e^-4	0.979	INTRON pgant2
2L	15779226	2L_15779226_SNP [dm3] 2L_15779226_SNP [dm6]	A	C	1.653e^-4	0.979	INTERGENIC
2L	4700131	2L_4700131_SNP [dm3] 2L_4700131_SNP [dm6]	G	A	1.654e^-4	0.979	DOWNSTREAM Taf12L INTRON CG34351
2L	3961379	2L_3961379_SNP [dm3] 2L_3961379_SNP [dm6]	G	A	1.657e^-4	0.979	INTRON fred
3R	26706243	3R_26706243_DEL [dm3] 3R_30880521_DEL [dm6]	AGTTTGGGG	A	1.658e^-4	0.979	INTRON CG12071
3R	26630609	3R_26630609_SNP [dm3] 3R_30804887_SNP [dm6]	T	G	1.675e^-4	0.979	INTRON wts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_sens
3R	16985649	3R_16985649_SNP [dm3] 3R_21159927_SNP [dm6]	C	T	1.676e^-4	0.979	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
2R	11317538	2R_11317538_SNP [dm3] 2R_15430033_SNP [dm6]	T	C	1.683e^-4	0.979	INTRON CG43729
3R	22376796	3R_22376796_SNP [dm3] 3R_26551074_SNP [dm6]	T	A	1.693e^-4	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1599973	2R_1599973_SNP [dm3] 2R_5712468_SNP [dm6]	T	A	1.696e^-4	0.979	INTRON ap	TF binding site mE1_TFBS_cad
3R	20348660	3R_20348660_SNP [dm3] 3R_24522938_SNP [dm6]	A	G	1.697e^-4	0.979	SYNONYMOUS_CODING CG13622 DOWNSTREAM Pp1alpha-96A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	390348	2L_390348_SNP [dm3] 2L_390348_SNP [dm6]	A	T	1.708e^-4	0.979	INTERGENIC
2L	14088209	2L_14088209_DEL [dm3] 2L_14088209_DEL [dm6]	TAGCACT	T	1.714e^-4	0.979	INTRON nAChRalpha5
X	12005156	X_12005156_SNP [dm3] X_12111123_SNP [dm6]	C	A	1.715e^-4	0.979	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
3L	14942671	3L_14942671_SNP [dm3] 3L_14949571_SNP [dm6]	A	C	1.718e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13464166	2R_13464166_SNP [dm3] 2R_17576661_SNP [dm6]	A	C	1.718e^-4	0.979	NON_SYNONYMOUS_CODING Dcr-2	TF binding site mE1_TFBS_sens
3R	22089262	3R_22089262_SNP [dm3] 3R_26263540_SNP [dm6]	G	T	1.718e^-4	0.979	INTRON CG6154
3L	9627055	3L_9627055_SNP [dm3] 3L_9633955_SNP [dm6]	G	A	1.727e^-4	0.979	INTRON fry	TF binding site mE1_TFBS_cad
2L	19235215	2L_19235215_SNP [dm3] 2L_19235215_SNP [dm6]	C	A	1.727e^-4	0.979	INTERGENIC
3R	16797067	3R_16797067_SNP [dm3] 3R_20971345_SNP [dm6]	C	T	1.732e^-4	0.979	INTRON Atpalpha
2L	4726356	2L_4726356_SNP [dm3] 2L_4726356_SNP [dm6]	C	T	1.735e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4726357	2L_4726357_SNP [dm3] 2L_4726357_SNP [dm6]	C	T	1.735e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11306488	3L_11306488_SNP [dm3] 3L_11313388_SNP [dm6]	T	A	1.736e^-4	0.979	UTR_3_PRIME CG7573	TF binding site mE1_TFBS_sens
3L	1368869	3L_1368869_DEL [dm3] 3L_1368869_DEL [dm6]	AA	A	1.740e^-4	0.979	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14672973	3R_14672973_SNP [dm3] 3R_18847251_SNP [dm6]	A	T	1.746e^-4	0.979	INTRON CG18208
3L	1003129	3L_1003129_SNP [dm3] 3L_1003129_SNP [dm6]	G	A	1.752e^-4	0.979	INTRON trio
2R	16846341	2R_16846341_SNP [dm3] 2R_20958836_SNP [dm6]	C	T	1.754e^-4	0.979	NON_SYNONYMOUS_CODING hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9907587	3R_9907587_SNP [dm3] 3R_14081865_SNP [dm6]	C	T	1.754e^-4	0.979	SYNONYMOUS_CODING foxo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26899642	3R_26899642_SNP [dm3] 3R_31073920_SNP [dm6]	G	A	1.755e^-4	0.979	INTRON Sox100B
3R	22132382	3R_22132382_SNP [dm3] 3R_26306660_SNP [dm6]	C	T	1.757e^-4	0.979	INTERGENIC
3R	17348249	3R_17348249_SNP [dm3] 3R_21522527_SNP [dm6]	T	G	1.759e^-4	0.979	INTRON CG7956
3R	24015662	3R_24015662_SNP [dm3] 3R_28189940_SNP [dm6]	C	T	1.761e^-4	0.979	INTRON CG34354
3L	7799404	3L_7799404_SNP [dm3] 3L_7806304_SNP [dm6]	A	C	1.765e^-4	0.979	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1990836	2L_1990836_SNP [dm3] 2L_1990836_SNP [dm6]	G	A	1.776e^-4	0.979	DOWNSTREAM Obp22a EXON CR42874
2R	13536726	2R_13536726_SNP [dm3] 2R_17649221_SNP [dm6]	A	C	1.777e^-4	0.979	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10646708	3L_10646708_SNP [dm3] 3L_10653608_SNP [dm6]	A	G	1.789e^-4	0.979	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25127144	3R_25127144_INS [dm3] 3R_29301422_INS [dm6]	C	CATC	1.791e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10933666	2L_10933666_DEL [dm3] 2L_10933666_DEL [dm6]	ATAGA	A	1.792e^-4	0.979	INTRON dpr2
3L	7279634	3L_7279634_SNP [dm3] 3L_7286534_SNP [dm6]	G	T	1.807e^-4	0.979	INTRON unc-13-4A
2L	7358757	2L_7358757_SNP [dm3] 2L_7358757_SNP [dm6]	G	A	1.810e^-4	0.979	INTERGENIC
2L	9089164	2L_9089164_SNP [dm3] 2L_9089164_SNP [dm6]	C	T	1.819e^-4	0.979	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8972226	X_8972226_SNP [dm3] X_9078193_SNP [dm6]	A	C	1.821e^-4	0.979	DOWNSTREAM CG7246 INTRON CG44325
2L	16571143	2L_16571143_SNP [dm3] 2L_16571143_SNP [dm6]	A	G	1.826e^-4	0.979	INTRON CG42389
3R	23784032	3R_23784032_DEL [dm3] 3R_27958310_DEL [dm6]	CATG	C	1.830e^-4	0.979	CODON_DELETION CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11880592	3L_11880592_SNP [dm3] 3L_11887492_SNP [dm6]	G	T	1.832e^-4	0.979	UTR_3_PRIME CG5897 INTRON CG44837
2R	11315929	2R_11315929_SNP [dm3] 2R_15428424_SNP [dm6]	T	C	1.851e^-4	0.979	UPSTREAM CG34188 INTRON CG43729
2R	12207880	2R_12207880_SNP [dm3] 2R_16320375_SNP [dm6]	A	G	1.852e^-4	0.979	SYNONYMOUS_CODING CG8060 DOWNSTREAM CG30096
3L	10117509	3L_10117509_SNP [dm3] 3L_10124409_SNP [dm6]	C	T	1.853e^-4	0.979	INTRON dpr6	TF binding site mE1_TFBS_sens
3L	16432397	3L_16432397_SNP [dm3] 3L_16439297_SNP [dm6]	T	C	1.853e^-4	0.979	INTRON CG33158 & 1 other
X	476700	X_476700_SNP [dm3] X_582667_SNP [dm6]	A	C	1.861e^-4	0.979	UTR_5_PRIME vnd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24009743	3R_24009743_SNP [dm3] 3R_28184021_SNP [dm6]	A	G	1.870e^-4	0.979	INTRON CG34354
3L	11925855	3L_11925855_SNP [dm3] 3L_11932755_SNP [dm6]	T	C	1.871e^-4	0.979	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16244519	2L_16244519_SNP [dm3] 2L_16244519_SNP [dm6]	T	G	1.876e^-4	0.979	NON_SYNONYMOUS_CODING CG42818
3L	14275976	3L_14275976_SNP [dm3] 3L_14282876_SNP [dm6]	C	G	1.884e^-4	0.979	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2354692	3L_2354692_SNP [dm3] 3L_2354692_SNP [dm6]	C	T	1.895e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17574000	2R_17574000_SNP [dm3] 2R_21686495_SNP [dm6]	C	T	1.897e^-4	0.979	SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306	TF binding site BDTNP1_TFBS_dl
2L	19803972	2L_19803972_SNP [dm3] 2L_19803972_SNP [dm6]	G	C	1.921e^-4	0.979	INTRON sick
2L	6244178	2L_6244178_SNP [dm3] 2L_6244178_SNP [dm6]	C	A	1.921e^-4	0.979	INTERGENIC
3R	2744970	3R_2744970_DEL [dm3] 3R_6919248_DEL [dm6]	GG	G	1.935e^-4	0.979	INTRON Antp	TF binding site BDTNP1_TFBS_twi
3R	3673873	3R_3673873_SNP [dm3] 3R_7848151_SNP [dm6]	G	A	1.942e^-4	0.979	SPLICE_SITE_REGION CG34384 INTRON CG34384
3L	1167030	3L_1167030_SNP [dm3] 3L_1167030_SNP [dm6]	T	C	1.945e^-4	0.979	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	24030798	3R_24030798_SNP [dm3] 3R_28205076_SNP [dm6]	G	T	1.953e^-4	0.979	INTRON CG34354
2R	9214440	2R_9214440_SNP [dm3] 2R_13326935_SNP [dm6]	C	T	1.956e^-4	0.979	INTERGENIC
2R	17797705	2R_17797705_SNP [dm3] 2R_21910200_SNP [dm6]	G	T	1.963e^-4	0.979	INTRON Fili
3R	22730121	3R_22730121_SNP [dm3] 3R_26904399_SNP [dm6]	C	T	1.982e^-4	0.979	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	2190819	3L_2190819_SNP [dm3] 3L_2190819_SNP [dm6]	C	A	1.993e^-4	0.979	INTRON CG5707
X	8394094	X_8394094_SNP [dm3] X_8500061_SNP [dm6]	A	G	1.993e^-4	0.979	INTRON CG33181
2R	8964822	2R_8964822_SNP [dm3] 2R_13077317_SNP [dm6]	C	G	1.996e^-4	0.979	INTRON Drl-2	TF binding site mE1_TFBS_cad
3R	8548384	3R_8548384_SNP [dm3] 3R_12722662_SNP [dm6]	T	A	1.998e^-4	0.979	UPSTREAM Men INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14980339	3L_14980339_SNP [dm3] 3L_14987239_SNP [dm6]	C	T	2.004e^-4	0.979	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10030798	2R_10030798_SNP [dm3] 2R_14143293_SNP [dm6]	T	C	2.004e^-4	0.979	INTERGENIC
3R	26909717	3R_26909717_SNP [dm3] 3R_31083995_SNP [dm6]	G	A	2.016e^-4	0.979	DOWNSTREAM Sox100B INTERGENIC
2L	10196574	2L_10196574_SNP [dm3] 2L_10196574_SNP [dm6]	A	T	2.034e^-4	0.979	INTRON Sur
2R	7286613	2R_7286613_SNP [dm3] 2R_11399108_SNP [dm6]	T	C	2.046e^-4	0.979	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9681453	2L_9681453_SNP [dm3] 2L_9681453_SNP [dm6]	T	C	2.056e^-4	0.979	DOWNSTREAM Pka-C1 INTERGENIC
3R	9909281	3R_9909281_SNP [dm3] 3R_14083559_SNP [dm6]	T	C	2.060e^-4	0.979	INTRON foxo
3R	22657604	3R_22657604_SNP [dm3] 3R_26831882_SNP [dm6]	G	A	2.065e^-4	0.979	INTRON Tl
2R	17797586	2R_17797586_SNP [dm3] 2R_21910081_SNP [dm6]	A	T	2.070e^-4	0.979	INTRON Fili
2L	7358650	2L_7358650_SNP [dm3] 2L_7358650_SNP [dm6]	G	C	2.074e^-4	0.979	INTERGENIC
X	521432	X_521432_SNP [dm3] X_627399_SNP [dm6]	G	A	2.075e^-4	0.979	UTR_3_PRIME CG17829 DOWNSTREAM RpL36	TF binding site mE1_TFBS_sens
3L	7266785	3L_7266785_SNP [dm3] 3L_7273685_SNP [dm6]	T	C	2.076e^-4	0.979	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
3R	26332745	3R_26332745_SNP [dm3] 3R_30507023_SNP [dm6]	G	A	2.085e^-4	0.979	SPLICE_SITE_REGION CG15539 UPSTREAM CG34041 DOWNSTREAM mir-4908 INTRON CG15539
3R	16983787	3R_16983787_SNP [dm3] 3R_21158065_SNP [dm6]	A	T	2.086e^-4	0.979	INTRON SNF4Agamma
2L	17532793	2L_17532793_SNP [dm3] 2L_17532793_SNP [dm6]	T	C	2.088e^-4	0.979	UPSTREAM CG15145 INTERGENIC
3L	6538549	3L_6538549_SNP [dm3] 3L_6545449_SNP [dm6]	A	G	2.092e^-4	0.979	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11163199	2L_11163199_SNP [dm3] 2L_11163199_SNP [dm6]	A	T	2.096e^-4	0.979	INTRON Ca-beta
2L	4726315	2L_4726315_INS [dm3] 2L_4726315_INS [dm6]	T	TA	2.097e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13871607	3L_13871607_SNP [dm3] 3L_13878507_SNP [dm6]	A	T	2.112e^-4	0.979	UPSTREAM CG13737 INTRON dysc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24010129	3R_24010129_SNP [dm3] 3R_28184407_SNP [dm6]	G	T	2.114e^-4	0.979	INTRON CG34354
3R	21125627	3R_21125627_SNP [dm3] 3R_25299905_SNP [dm6]	A	T	2.118e^-4	0.979	UPSTREAM CG31288 & 1 other INTERGENIC
3L	5437748	3L_5437748_SNP [dm3] 3L_5444648_SNP [dm6]	G	T	2.144e^-4	0.979	INTERGENIC
3R	9909111	3R_9909111_SNP [dm3] 3R_14083389_SNP [dm6]	G	A	2.149e^-4	0.979	INTRON foxo
3R	14672975	3R_14672975_SNP [dm3] 3R_18847253_SNP [dm6]	T	A	2.149e^-4	0.979	INTRON CG18208
2L	1648596	2L_1648596_SNP [dm3] 2L_1648596_SNP [dm6]	G	A	2.155e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9629483	2L_9629483_SNP [dm3] 2L_9629483_SNP [dm6]	A	C	2.157e^-4	0.979	INTERGENIC
3R	17652421	3R_17652421_DEL [dm3] 3R_21826699_DEL [dm6]	ACACACCAGCA...	A	2.163e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27489165	3R_27489165_SNP [dm3] 3R_31663443_SNP [dm6]	C	G	2.166e^-4	0.979	UTR_3_PRIME kek6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2253009	2L_2253009_SNP [dm3] 2L_2253009_SNP [dm6]	A	G	2.168e^-4	0.979	UPSTREAM CG17234 & 1 other INTERGENIC
X	3643947	X_3643947_SNP [dm3] X_3749914_SNP [dm6]	C	T	2.170e^-4	0.979	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22382112	3R_22382112_SNP [dm3] 3R_26556390_SNP [dm6]	A	G	2.178e^-4	0.979	INTRON scrib
3R	10349795	3R_10349795_SNP [dm3] 3R_14524073_SNP [dm6]	C	T	2.183e^-4	0.979	INTRON Pde6
2L	17297663	2L_17297663_DEL [dm3] 2L_17297663_DEL [dm6]	GATTTTTAGGGCACTTCATT...	AATCTGTCCATCGTATGA...	2.184e^-4	0.979	INTERGENIC
X	11763199	X_11763199_SNP [dm3] X_11869166_SNP [dm6]	G	A	2.188e^-4	0.979	UPSTREAM CG1847 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	22128594	3R_22128594_SNP [dm3] 3R_26302872_SNP [dm6]	T	C	2.189e^-4	0.979	INTERGENIC
2R	5291049	2R_5291049_SNP [dm3] 2R_9403544_SNP [dm6]	T	C	2.196e^-4	0.979	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	17674193	X_17674193_SNP [dm3] X_17780160_SNP [dm6]	T	C	2.201e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5684047	X_5684047_SNP [dm3] X_5790014_SNP [dm6]	T	C	2.206e^-4	0.979	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CG42699 & 1 other	TF binding site mE1_TFBS_cad
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	2.206e^-4	0.979	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	10933695	2L_10933695_DEL [dm3] 2L_10933695_DEL [dm6]	TGTCTA	T	2.212e^-4	0.979	INTRON dpr2
3R	21145559	3R_21145559_DEL [dm3] 3R_25319837_DEL [dm6]	AA	A	2.215e^-4	0.979	INTRON CG10560
2R	20201142	2R_20201142_SNP [dm3] 2R_24313619_SNP [dm6]	T	A	2.237e^-4	0.979	DOWNSTREAM betaTub60D INTERGENIC	TF binding site mE1_TFBS_bab1
2L	11345533	2L_11345533_SNP [dm3] 2L_11345533_SNP [dm6]	C	T	2.238e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	27480078	3R_27480078_SNP [dm3] 3R_31654356_SNP [dm6]	T	C	2.253e^-4	0.979	INTRON kek6	TF binding site mE1_TFBS_chinmo
2R	10031189	2R_10031189_SNP [dm3] 2R_14143684_SNP [dm6]	C	T	2.257e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17797739	2R_17797739_SNP [dm3] 2R_21910234_SNP [dm6]	T	G	2.257e^-4	0.979	INTRON Fili
2L	9089185	2L_9089185_SNP [dm3] 2L_9089185_SNP [dm6]	G	A	2.265e^-4	0.979	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11925868	3L_11925868_SNP [dm3] 3L_11932768_SNP [dm6]	C	A	2.282e^-4	0.979	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20569723	3R_20569723_SNP [dm3] 3R_24744001_SNP [dm6]	C	T	2.284e^-4	0.979	SPLICE_SITE_REGION tok INTRON tok	TF binding site mE1_TFBS_cad
2L	9437931	2L_9437931_SNP [dm3] 2L_9437931_SNP [dm6]	T	A	2.288e^-4	0.979	UTR_5_PRIME numb DOWNSTREAM RpS28-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	723083	2L_723083_DEL [dm3] 2L_723083_DEL [dm6]	GCGTCCAAAGCCAAACA...	G	2.299e^-4	0.979	INTERGENIC
3R	14772061	3R_14772061_SNP [dm3] 3R_18946339_SNP [dm6]	C	A	2.304e^-4	0.979	INTRON CG42613
2R	10632983	2R_10632983_SNP [dm3] 2R_14745478_SNP [dm6]	T	G	2.311e^-4	0.979	UPSTREAM Dro & 1 other INTERGENIC
3R	26178449	3R_26178449_SNP [dm3] 3R_30352727_SNP [dm6]	A	G	2.311e^-4	0.979	INTRON hdc
3L	3786955	3L_3786955_SNP [dm3] 3L_3786955_SNP [dm6]	C	G	2.324e^-4	0.979	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14672976	3R_14672976_SNP [dm3] 3R_18847254_SNP [dm6]	T	A	2.339e^-4	0.979	INTRON CG18208
X	14370964	X_14370964_SNP [dm3] X_14476931_SNP [dm6]	G	C	2.339e^-4	0.979	INTRON CG9411
3R	22050782	3R_22050782_INS [dm3] 3R_26225060_INS [dm6]	C	CGTATTC	2.341e^-4	0.979	INTERGENIC
2L	17112731	2L_17112731_SNP [dm3] 2L_17112731_SNP [dm6]	T	G	2.345e^-4	0.979	INTERGENIC
2L	5998253	2L_5998253_SNP [dm3] 2L_5998253_SNP [dm6]	C	T	2.349e^-4	0.979	UPSTREAM lid INTRON lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22108120	2L_22108120_DEL [dm3] 2L_22108120_DEL [dm6]	GCCCGCGGCGCT...	TAAA	2.351e^-4	0.979	UPSTREAM CG10834 & 1 other INTERGENIC
3R	23365700	3R_23365700_SNP [dm3] 3R_27539978_SNP [dm6]	C	G	2.356e^-4	0.979	DOWNSTREAM CR44288 INTERGENIC
2L	15792623	2L_15792623_SNP [dm3] 2L_15792623_SNP [dm6]	C	A	2.360e^-4	0.979	INTERGENIC
2L	5001628	2L_5001628_DEL [dm3] 2L_5001628_DEL [dm6]	TTAACGACGA	T	2.368e^-4	0.979	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
3R	8507958	3R_8507958_SNP [dm3] 3R_12682236_SNP [dm6]	T	A	2.374e^-4	0.979	UTR_3_PRIME kar UPSTREAM Cyp313a4 DOWNSTREAM kar	TF binding site mE1_TFBS_cad
3R	17357879	3R_17357879_SNP [dm3] 3R_21532157_SNP [dm6]	C	T	2.382e^-4	0.979	EXON CR43372
2R	11034318	2R_11034318_SNP [dm3] 2R_15146813_SNP [dm6]	A	C	2.405e^-4	0.979	NON_SYNONYMOUS_CODING CG8089	TF binding site mE1_TFBS_sens
2L	5678134	2L_5678134_SNP [dm3] 2L_5678134_SNP [dm6]	C	T	2.406e^-4	0.979	UPSTREAM CG12511 INTERGENIC
3R	21146672	3R_21146672_SNP [dm3] 3R_25320950_SNP [dm6]	T	C	2.406e^-4	0.979	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
2L	10196526	2L_10196526_SNP [dm3] 2L_10196526_SNP [dm6]	G	T	2.411e^-4	0.979	INTRON Sur
3R	14683763	3R_14683763_SNP [dm3] 3R_18858041_SNP [dm6]	G	C	2.425e^-4	0.979	INTERGENIC
3R	8155315	3R_8155315_SNP [dm3] 3R_12329593_SNP [dm6]	A	C	2.425e^-4	0.979	EXON CR45583	TF binding site mE1_TFBS_sens
3R	14673166	3R_14673166_SNP [dm3] 3R_18847444_SNP [dm6]	G	A	2.435e^-4	0.979	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23051188	3R_23051188_SNP [dm3] 3R_27225466_SNP [dm6]	G	C	2.444e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_chinmo
3R	17478255	3R_17478255_SNP [dm3] 3R_21652533_SNP [dm6]	G	A	2.448e^-4	0.979	INTRON E2f	TF binding site mE1_TFBS_HSA
X	476104	X_476104_SNP [dm3] X_582071_SNP [dm6]	G	A	2.451e^-4	0.979	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27476678	3R_27476678_SNP [dm3] 3R_31650956_SNP [dm6]	T	C	2.464e^-4	0.979	INTRON kek6
2R	13840072	2R_13840072_SNP [dm3] 2R_17952567_SNP [dm6]	C	T	2.466e^-4	0.979	INTERGENIC
X	11763392	X_11763392_SNP [dm3] X_11869359_SNP [dm6]	T	C	2.466e^-4	0.979	UPSTREAM CG2025 INTRON CG1847	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	19352716	X_19352716_SNP [dm3] X_19458683_SNP [dm6]	G	A	2.468e^-4	0.979	INTRON kek5	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	495054	X_495054_SNP [dm3] X_601021_SNP [dm6]	A	T	2.478e^-4	0.979	INTRON CG13366
3R	24016152	3R_24016152_SNP [dm3] 3R_28190430_SNP [dm6]	T	C	2.479e^-4	0.979	INTRON CG34354
2L	2623735	2L_2623735_INS [dm3] 2L_2623735_INS [dm6]	A	ATG	2.483e^-4	0.979	INTERGENIC
3R	26319547	3R_26319547_SNP [dm3] 3R_30493825_SNP [dm6]	T	C	2.502e^-4	0.979	INTRON PH4alphaMP
3R	2520097	3R_2520097_SNP [dm3] 3R_6694375_SNP [dm6]	G	T	2.518e^-4	0.979	DOWNSTREAM Ccp84Ad & 1 other INTERGENIC
2R	7289824	2R_7289824_SNP [dm3] 2R_11402319_SNP [dm6]	A	T	2.525e^-4	0.979	INTERGENIC
3R	26907803	3R_26907803_SNP [dm3] 3R_31082081_SNP [dm6]	C	T	2.531e^-4	0.979	SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12930624	3L_12930624_SNP [dm3] 3L_12937524_SNP [dm6]	A	G	2.539e^-4	0.979	INTERGENIC
3R	4914244	3R_4914244_SNP [dm3] 3R_9088522_SNP [dm6]	A	G	2.554e^-4	0.979	INTRON pum
3L	10480829	3L_10480829_INS [dm3] 3L_10487729_INS [dm6]	G	GG	2.567e^-4	0.979	INTRON A2bp1
3L	7146034	3L_7146034_SNP [dm3] 3L_7152934_SNP [dm6]	T	C	2.593e^-4	0.979	INTRON corn
3L	7146036	3L_7146036_SNP [dm3] 3L_7152936_SNP [dm6]	A	G	2.593e^-4	0.979	INTRON corn
2L	17494944	2L_17494944_SNP [dm3] 2L_17494944_SNP [dm6]	C	T	2.598e^-4	0.979	INTRON qua
2R	10133729	2R_10133729_SNP [dm3] 2R_14246224_SNP [dm6]	G	A	2.600e^-4	0.979	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
3L	9369344	3L_9369344_SNP [dm3] 3L_9376244_SNP [dm6]	C	A	2.607e^-4	0.979	UTR_3_PRIME CG4461 DOWNSTREAM Hsp26
3R	22376821	3R_22376821_SNP [dm3] 3R_26551099_SNP [dm6]	A	G	2.614e^-4	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26851522	3R_26851522_SNP [dm3] 3R_31025800_SNP [dm6]	T	G	2.619e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15779220	2L_15779220_SNP [dm3] 2L_15779220_SNP [dm6]	C	A	2.625e^-4	0.979	INTERGENIC
3R	23935401	3R_23935401_SNP [dm3] 3R_28109679_SNP [dm6]	G	A	2.627e^-4	0.979	INTERGENIC
3L	15669935	3L_15669935_DEL [dm3] 3L_15676835_DEL [dm6]	ATA	A	2.654e^-4	0.979	INTERGENIC
3L	8128305	3L_8128305_SNP [dm3] 3L_8135205_SNP [dm6]	C	A	2.665e^-4	0.979	NON_SYNONYMOUS_CODING CG7504 INTRON CG7504
3R	21146599	3R_21146599_SNP [dm3] 3R_25320877_SNP [dm6]	G	A	2.665e^-4	0.979	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
2R	11302139	2R_11302139_SNP [dm3] 2R_15414634_SNP [dm6]	T	C	2.689e^-4	0.979	INTRON CG43729
2R	19306358	2R_19306358_SNP [dm3] 2R_23418835_SNP [dm6]	G	T	2.714e^-4	0.979	INTRON CG9812
2R	13222225	2R_13222225_SNP [dm3] 2R_17334720_SNP [dm6]	T	C	2.719e^-4	0.979	INTRON mbl
2L	10912580	2L_10912580_SNP [dm3] 2L_10912580_SNP [dm6]	T	C	2.722e^-4	0.979	INTERGENIC
3L	11229662	3L_11229662_SNP [dm3] 3L_11236562_SNP [dm6]	C	T	2.728e^-4	0.979	UPSTREAM Ir68a & 1 other EXON CR44718	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26679682	3R_26679682_SNP [dm3] 3R_30853960_SNP [dm6]	A	G	2.730e^-4	0.979	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	3902806	3R_3902806_SNP [dm3] 3R_8077084_SNP [dm6]	C	T	2.742e^-4	0.979	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3529655	3L_3529655_SNP [dm3] 3L_3529655_SNP [dm6]	T	G	2.748e^-4	0.979	INTRON Eip63E
3R	24010337	3R_24010337_SNP [dm3] 3R_28184615_SNP [dm6]	A	G	2.752e^-4	0.979	INTRON CG34354
2L	15954654	2L_15954654_SNP [dm3] 2L_15954654_SNP [dm6]	T	A	2.754e^-4	0.979	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	15773206	2L_15773206_SNP [dm3] 2L_15773206_SNP [dm6]	C	A	2.761e^-4	0.979	UPSTREAM CG31826 INTERGENIC
3R	27725225	3R_27725225_SNP [dm3] 3R_31899503_SNP [dm6]	C	T	2.761e^-4	0.979	INTRON heph
3R	20620003	3R_20620003_SNP [dm3] 3R_24794281_SNP [dm6]	G	C	2.762e^-4	0.979	INTRON Ets96B
2L	3992418	2L_3992418_SNP [dm3] 2L_3992418_SNP [dm6]	G	A	2.762e^-4	0.979	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26897488	3R_26897488_SNP [dm3] 3R_31071766_SNP [dm6]	T	C	2.764e^-4	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2L	937521	2L_937521_SNP [dm3] 2L_937521_SNP [dm6]	G	C	2.771e^-4	0.979	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	512683	X_512683_SNP [dm3] X_618650_SNP [dm6]	T	C	2.792e^-4	0.979	INTRON CG13366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens
2L	7224298	2L_7224298_SNP [dm3] 2L_7224298_SNP [dm6]	G	C	2.795e^-4	0.979	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	15771013	2L_15771013_SNP [dm3] 2L_15771013_SNP [dm6]	A	T	2.800e^-4	0.979	DOWNSTREAM CG31826 INTRON Ku80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
X	2607250	X_2607250_SNP [dm3] X_2713217_SNP [dm6]	A	G	2.813e^-4	0.979	SYNONYMOUS_CODING CG2685 UPSTREAM CG2694	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1710862	2L_1710862_SNP [dm3] 2L_1710862_SNP [dm6]	G	A	2.813e^-4	0.979	SYNONYMOUS_CODING mRpL48 UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23935407	3R_23935407_SNP [dm3] 3R_28109685_SNP [dm6]	G	A	2.816e^-4	0.979	INTERGENIC
3R	27480479	3R_27480479_SNP [dm3] 3R_31654757_SNP [dm6]	C	G	2.824e^-4	0.979	INTRON kek6	TF binding site mE1_TFBS_chinmo
3R	11918376	3R_11918376_SNP [dm3] 3R_16092654_SNP [dm6]	G	A	2.831e^-4	0.979	INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5330710	2R_5330710_SNP [dm3] 2R_9443205_SNP [dm6]	C	A	2.832e^-4	0.979	INTRON ced-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2834941	2L_2834941_SNP [dm3] 2L_2834941_SNP [dm6]	A	C	2.849e^-4	0.979	UTR_3_PRIME CG3119
2R	10933472	2R_10933472_SNP [dm3] 2R_15045967_SNP [dm6]	A	T	2.855e^-4	0.979	INTERGENIC
X	3702033	X_3702033_SNP [dm3] X_3808000_SNP [dm6]	T	A	2.857e^-4	0.979	INTRON fd3F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15032190	2L_15032190_SNP [dm3] 2L_15032190_SNP [dm6]	A	T	2.868e^-4	0.979	SPLICE_SITE_REGION GABA-B-R1 UPSTREAM CG31832 INTRON GABA-B-R1
2R	11315924	2R_11315924_SNP [dm3] 2R_15428419_SNP [dm6]	T	C	2.886e^-4	0.979	UPSTREAM CG34188 INTRON CG43729
2L	22112684	2L_22112684_INS [dm3] 2L_22112684_INS [dm6]	C	CTTA	2.890e^-4	0.979	INTERGENIC	transposable element FlyBase
3R	23887745	3R_23887745_SNP [dm3] 3R_28062023_SNP [dm6]	A	C	2.892e^-4	0.979	INTRON CG34362
3R	21614119	3R_21614119_SNP [dm3] 3R_25788397_SNP [dm6]	T	A	2.900e^-4	0.979	INTRON CG31380
3L	8710513	3L_8710513_SNP [dm3] 3L_8717413_SNP [dm6]	C	T	2.907e^-4	0.979	INTERGENIC
3L	13871599	3L_13871599_SNP [dm3] 3L_13878499_SNP [dm6]	G	T	2.912e^-4	0.979	UPSTREAM CG13737 INTRON dysc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16901026	X_16901026_SNP [dm3] X_17006993_SNP [dm6]	A	C	2.923e^-4	0.979	INTRON CG45002
2R	16951687	2R_16951687_SNP [dm3] 2R_21064182_SNP [dm6]	G	A	2.935e^-4	0.979	DOWNSTREAM Cht8 INTRON Cht12
3L	6660647	3L_6660647_SNP [dm3] 3L_6667547_SNP [dm6]	G	C	2.940e^-4	0.979	NON_SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
3L	13575930	3L_13575930_SNP [dm3] 3L_13582830_SNP [dm6]	T	C	2.941e^-4	0.979	INTRON bru-3
3R	4588998	3R_4588998_SNP [dm3] 3R_8763276_SNP [dm6]	A	T	2.947e^-4	0.979	INTRON CG11768 & 1 other
X	6438325	X_6438325_SNP [dm3] X_6544292_SNP [dm6]	G	T	2.949e^-4	0.979	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
3R	15294477	3R_15294477_SNP [dm3] 3R_19468755_SNP [dm6]	C	T	2.949e^-4	0.979	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8066819	3L_8066819_SNP [dm3] 3L_8073719_SNP [dm6]	G	A	2.954e^-4	0.979	UPSTREAM Ect4 INTRON Ect4
2L	17297774	2L_17297774_SNP [dm3] 2L_17297774_SNP [dm6]	C	A	2.955e^-4	0.979	INTERGENIC
3L	12358042	3L_12358042_SNP [dm3] 3L_12364942_SNP [dm6]	T	G	2.955e^-4	0.979	INTERGENIC
3L	9615291	3L_9615291_SNP [dm3] 3L_9622191_SNP [dm6]	C	G	2.956e^-4	0.979	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3L	12630144	3L_12630144_SNP [dm3] 3L_12637044_SNP [dm6]	A	G	2.959e^-4	0.979	INTRON CR32111
3L	6660023	3L_6660023_SNP [dm3] 3L_6666923_SNP [dm6]	A	C	2.965e^-4	0.979	SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
3L	16313121	3L_16313121_SNP [dm3] 3L_16320021_SNP [dm6]	C	A	2.965e^-4	0.979	SYNONYMOUS_CODING CG13060 UPSTREAM CG13041 & 1 other DOWNSTREAM CR45663 & 1 other
3L	13896582	3L_13896582_SNP [dm3] 3L_13903482_SNP [dm6]	A	G	2.968e^-4	0.979	UPSTREAM dysc INTERGENIC
2L	10912575	2L_10912575_SNP [dm3] 2L_10912575_SNP [dm6]	G	A	2.972e^-4	0.979	INTERGENIC
3R	14731140	3R_14731140_SNP [dm3] 3R_18905418_SNP [dm6]	C	T	2.975e^-4	0.979	SYNONYMOUS_CODING CG14292
3R	21628563	3R_21628563_SNP [dm3] 3R_25802841_SNP [dm6]	C	A	2.977e^-4	0.979	INTERGENIC
2R	4831458	2R_4831458_SNP [dm3] 2R_8943953_SNP [dm6]	G	C	2.993e^-4	0.979	DOWNSTREAM CG8230 EXON CR44274
X	490123	X_490123_SNP [dm3] X_596090_SNP [dm6]	G	A	3.003e^-4	0.979	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5053155	X_5053155_SNP [dm3] X_5159122_SNP [dm6]	A	T	3.003e^-4	0.979	INTRON rg & 1 other
3L	1931122	3L_1931122_SNP [dm3] 3L_1931122_SNP [dm6]	C	G	3.007e^-4	0.979	INTRON Dbx
3R	20111656	3R_20111656_SNP [dm3] 3R_24285934_SNP [dm6]	T	C	3.018e^-4	0.979	INTRON CG6356	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9964550	3L_9964550_SNP [dm3] 3L_9971450_SNP [dm6]	C	T	3.022e^-4	0.979	SYNONYMOUS_CODING CG6674 UPSTREAM vnc & 1 other DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl
2L	6126819	2L_6126819_SNP [dm3] 2L_6126819_SNP [dm6]	T	C	3.029e^-4	0.979	SYNONYMOUS_CODING WDR79 DOWNSTREAM Arpc4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11951338	2L_11951338_SNP [dm3] 2L_11951338_SNP [dm6]	T	G	3.032e^-4	0.979	DOWNSTREAM CR43314 INTERGENIC
2L	15650944	2L_15650944_SNP [dm3] 2L_15650944_SNP [dm6]	C	T	3.034e^-4	0.979	SYNONYMOUS_CODING CG4587
2L	6078142	2L_6078142_SNP [dm3] 2L_6078142_SNP [dm6]	C	A	3.039e^-4	0.979	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8519772	3R_8519772_SNP [dm3] 3R_12694050_SNP [dm6]	A	T	3.042e^-4	0.979	UTR_3_PRIME Arp1 DOWNSTREAM CG14391	TF binding site mE1_TFBS_HSA
2L	12408171	2L_12408171_SNP [dm3] 2L_12408171_SNP [dm6]	G	A	3.044e^-4	0.979	INTRON vir-1
2R	12207276	2R_12207276_SNP [dm3] 2R_16319771_SNP [dm6]	T	G	3.053e^-4	0.979	NON_SYNONYMOUS_CODING CG8060	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5523772	X_5523772_SNP [dm3] X_5629739_SNP [dm6]	T	C	3.069e^-4	0.979	SYNONYMOUS_CODING CG42492
3R	14673053	3R_14673053_SNP [dm3] 3R_18847331_SNP [dm6]	A	G	3.071e^-4	0.979	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6876905	3R_6876905_SNP [dm3] 3R_11051183_SNP [dm6]	G	T	3.072e^-4	0.979	INTERGENIC
2L	4787458	2L_4787458_SNP [dm3] 2L_4787458_SNP [dm6]	A	G	3.083e^-4	0.979	INTRON CG15630
2L	394238	2L_394238_INS [dm3] 2L_394238_INS [dm6]	A	AA	3.088e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4990110	2L_4990110_SNP [dm3] 2L_4990110_SNP [dm6]	C	A	3.092e^-4	0.979	INTRON CG34126	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9512344	2L_9512344_SNP [dm3] 2L_9512344_SNP [dm6]	G	T	3.096e^-4	0.979	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11880077	3L_11880077_SNP [dm3] 3L_11886977_SNP [dm6]	T	C	3.100e^-4	0.979	DOWNSTREAM CG5897 INTRON CG44837
3R	10277025	3R_10277025_INS [dm3] 3R_14451303_INS [dm6]	T	TTT	3.104e^-4	0.979	INTRON cv-c
2R	5793979	2R_5793979_SNP [dm3] 2R_9906474_SNP [dm6]	T	C	3.122e^-4	0.979	INTRON FMRFa
2L	6526089	2L_6526089_SNP [dm3] 2L_6526089_SNP [dm6]	A	T	3.133e^-4	0.979	UTR_3_PRIME CG31637	TF binding site mE1_TFBS_D
3R	23884703	3R_23884703_SNP [dm3] 3R_28058981_SNP [dm6]	A	G	3.138e^-4	0.979	INTRON CG34362
3L	13853232	3L_13853232_SNP [dm3] 3L_13860132_SNP [dm6]	C	A	3.143e^-4	0.979	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3R	22901519	3R_22901519_DEL [dm3] 3R_27075797_DEL [dm6]	ACCG	A	3.145e^-4	0.979	UPSTREAM CG14257 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	397179	2L_397179_SNP [dm3] 2L_397179_SNP [dm6]	A	C	3.146e^-4	0.979	NON_SYNONYMOUS_CODING CG4213 DOWNSTREAM CR43718	TF binding site mE1_TFBS_cad
3R	8526382	3R_8526382_SNP [dm3] 3R_12700660_SNP [dm6]	G	A	3.150e^-4	0.979	INTRON Past1
3R	27703498	3R_27703498_SNP [dm3] 3R_31877776_SNP [dm6]	C	T	3.150e^-4	0.979	INTRON heph	TF binding site mE1_TFBS_inv
2R	6569988	2R_6569988_SNP [dm3] 2R_10682483_SNP [dm6]	T	G	3.153e^-4	0.979	INTRON stan	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15776366	2R_15776366_SNP [dm3] 2R_19888861_SNP [dm6]	T	G	3.154e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26051515	3R_26051515_DEL [dm3] 3R_30225793_DEL [dm6]	AT	A	3.157e^-4	0.979	INTERGENIC
2L	12643654	2L_12643654_INS [dm3] 2L_12643654_INS [dm6]	T	TTTAT	3.166e^-4	0.979	INTRON Ref2
2L	21888444	2L_21888444_SNP [dm3] 2L_21888444_SNP [dm6]	C	G	3.169e^-4	0.979	INTERGENIC
3L	16444650	3L_16444650_SNP [dm3] 3L_16451550_SNP [dm6]	C	T	3.169e^-4	0.979	NON_SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	18711769	3R_18711769_SNP [dm3] 3R_22886047_SNP [dm6]	C	G	3.172e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3302839	2L_3302839_SNP [dm3] 2L_3302839_SNP [dm6]	A	T	3.178e^-4	0.979	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	4345992	3L_4345992_SNP [dm3] 3L_4345992_SNP [dm6]	G	A	3.180e^-4	0.979	UPSTREAM Cip4 INTRON Cip4 EXON CR45156
2L	4951085	2L_4951085_SNP [dm3] 2L_4951085_SNP [dm6]	T	G	3.184e^-4	0.979	UPSTREAM Jon25Biii INTERGENIC
X	18642655	X_18642655_SNP [dm3] X_18748622_SNP [dm6]	C	T	3.185e^-4	0.979	UPSTREAM CG12609 INTERGENIC
3L	486593	3L_486593_SNP [dm3] 3L_486593_SNP [dm6]	G	A	3.188e^-4	0.979	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	9579282	2L_9579282_SNP [dm3] 2L_9579282_SNP [dm6]	T	G	3.188e^-4	0.979	NON_SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24696207	3R_24696207_SNP [dm3] 3R_28870485_SNP [dm6]	T	A	3.192e^-4	0.979	DOWNSTREAM CG33203 & 1 other INTERGENIC
2R	10120607	2R_10120607_SNP [dm3] 2R_14233102_SNP [dm6]	C	T	3.202e^-4	0.979	SYNONYMOUS_CODING Opa1 DOWNSTREAM mir-1016
2R	20200953	2R_20200953_SNP [dm3] 2R_24313430_SNP [dm6]	G	C	3.205e^-4	0.979	DOWNSTREAM betaTub60D INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17297629	2L_17297629_DEL [dm3] 2L_17297629_DEL [dm6]	GT	G	3.206e^-4	0.979	INTERGENIC
3R	8546870	3R_8546870_SNP [dm3] 3R_12721148_SNP [dm6]	A	G	3.208e^-4	0.979	UPSTREAM Men INTRON Men
2R	7592620	2R_7592620_SNP [dm3] 2R_11705115_SNP [dm6]	G	A	3.209e^-4	0.979	EXON CR45377
2L	9990381	2L_9990381_SNP [dm3] 2L_9990381_SNP [dm6]	C	G	3.221e^-4	0.979	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	5142227	3L_5142227_SNP [dm3] 3L_5149127_SNP [dm6]	A	C	3.226e^-4	0.979	NON_SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
2L	4235084	2L_4235084_SNP [dm3] 2L_4235084_SNP [dm6]	G	T	3.229e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8474012	3L_8474012_SNP [dm3] 3L_8480912_SNP [dm6]	G	A	3.232e^-4	0.979	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12280396	X_12280396_SNP [dm3] X_12386363_SNP [dm6]	T	G	3.248e^-4	0.979	INTERGENIC
3R	26555502	3R_26555502_SNP [dm3] 3R_30729780_SNP [dm6]	G	C	3.252e^-4	0.979	DOWNSTREAM CG11313 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	15650953	2L_15650953_SNP [dm3] 2L_15650953_SNP [dm6]	T	C	3.255e^-4	0.979	SYNONYMOUS_CODING CG4587
2L	4869918	2L_4869918_SNP [dm3] 2L_4869918_SNP [dm6]	A	T	3.264e^-4	0.979	INTRON pog
2L	10550082	2L_10550082_SNP [dm3] 2L_10550082_SNP [dm6]	G	A	3.276e^-4	0.979	INTRON Trim9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	3.278e^-4	0.979	INTERGENIC
2L	19819891	2L_19819891_SNP [dm3] 2L_19819891_SNP [dm6]	T	C	3.292e^-4	0.979	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	1940506	X_1940506_SNP [dm3] X_2046473_SNP [dm6]	G	C	3.293e^-4	0.979	SYNONYMOUS_CODING moody INTRON CG4313	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13115016	3L_13115016_SNP [dm3] 3L_13121916_SNP [dm6]	A	G	3.295e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16492605	2L_16492605_DEL [dm3] 2L_16492605_DEL [dm6]	AA	A	3.299e^-4	0.979	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	20339707	X_20339707_SNP [dm3] X_20468680_SNP [dm6]	T	G	3.301e^-4	0.979	SYNONYMOUS_CODING GstT3
X	8162768	X_8162768_SNP [dm3] X_8268735_SNP [dm6]	A	T	3.306e^-4	0.979	INTRON CG1632	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4913399	2L_4913399_SNP [dm3] 2L_4913399_SNP [dm6]	C	A	3.309e^-4	0.979	INTRON hoe1
3R	25936384	3R_25936384_SNP [dm3] 3R_30110662_SNP [dm6]	T	G	3.313e^-4	0.979	INTRON sima	TF binding site mE1_TFBS_cad
3L	11171129	3L_11171129_SNP [dm3] 3L_11178029_SNP [dm6]	A	C	3.315e^-4	0.979	UTR_3_PRIME GlcAT-P
3L	7066696	3L_7066696_SNP [dm3] 3L_7073596_SNP [dm6]	T	C	3.319e^-4	0.979	SYNONYMOUS_CODING CG34030 INTRON CG8641
2L	17297858	2L_17297858_SNP [dm3] 2L_17297858_SNP [dm6]	G	A	3.324e^-4	0.979	INTERGENIC
2L	14890831	2L_14890831_SNP [dm3] 2L_14890831_SNP [dm6]	G	T	3.327e^-4	0.979	INTERGENIC
3L	9602246	3L_9602246_SNP [dm3] 3L_9609146_SNP [dm6]	T	C	3.328e^-4	0.979	SYNONYMOUS_CODING CG3280
3L	13321262	3L_13321262_SNP [dm3] 3L_13328162_SNP [dm6]	G	C	3.331e^-4	0.979	UPSTREAM CG14113 INTERGENIC
3L	10745074	3L_10745074_SNP [dm3] 3L_10751974_SNP [dm6]	T	C	3.332e^-4	0.979	INTERGENIC
3R	22376188	3R_22376188_SNP [dm3] 3R_26550466_SNP [dm6]	G	A	3.347e^-4	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi
2L	17297642	2L_17297642_SNP [dm3] 2L_17297642_SNP [dm6]	C	T	3.351e^-4	0.979	INTERGENIC
3L	7858768	3L_7858768_SNP [dm3] 3L_7865668_SNP [dm6]	A	C	3.360e^-4	0.979	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	2663269	3L_2663269_SNP [dm3] 3L_2663269_SNP [dm6]	C	A	3.360e^-4	0.979	SPLICE_SITE_REGION CG33234 SYNONYMOUS_CODING CG33234 INTRON Fife
3L	1305061	3L_1305061_SNP [dm3] 3L_1305061_SNP [dm6]	C	T	3.371e^-4	0.979	UTR_3_PRIME CG2277 DOWNSTREAM CG2277 & 1 other
2L	17293582	2L_17293582_SNP [dm3] 2L_17293582_SNP [dm6]	G	A	3.379e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7799077	3L_7799077_SNP [dm3] 3L_7805977_SNP [dm6]	T	A	3.379e^-4	0.979	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	15448753	3L_15448753_SNP [dm3] 3L_15455653_SNP [dm6]	G	A	3.384e^-4	0.979	INTERGENIC
3R	17055258	3R_17055258_SNP [dm3] 3R_21229536_SNP [dm6]	T	G	3.388e^-4	0.979	DOWNSTREAM e & 1 other INTERGENIC
2L	17297752	2L_17297752_INS [dm3] 2L_17297752_INS [dm6]	A	ATGAA	3.394e^-4	0.979	INTERGENIC
2R	8692497	2R_8692497_SNP [dm3] 2R_12804992_SNP [dm6]	G	C	3.403e^-4	0.979	INTERGENIC
X	21363703	X_21363703_SNP [dm3] X_21492676_SNP [dm6]	C	T	3.409e^-4	0.979	INTERGENIC
X	20345718	X_20345718_SNP [dm3] X_20474691_SNP [dm6]	G	A	3.410e^-4	0.979	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10819166	2R_10819166_SNP [dm3] 2R_14931661_SNP [dm6]	G	A	3.420e^-4	0.979	SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_sens
2L	22112713	2L_22112713_SNP [dm3] 2L_22112713_SNP [dm6]	A	G	3.423e^-4	0.979	INTERGENIC	transposable element FlyBase
2L	10860952	2L_10860952_DEL [dm3] 2L_10860952_DEL [dm6]	ATAA	A	3.433e^-4	0.979	INTRON Stam	TF binding site mE1_TFBS_cad
2L	1585488	2L_1585488_SNP [dm3] 2L_1585488_SNP [dm6]	G	A	3.437e^-4	0.979	SYNONYMOUS_CODING CG10869 INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13736640	3L_13736640_SNP [dm3] 3L_13743540_SNP [dm6]	G	A	3.441e^-4	0.979	INTRON bru-3
3R	8363729	3R_8363729_SNP [dm3] 3R_12538007_SNP [dm6]	G	T	3.443e^-4	0.979	INTRON Octbeta3R
2L	3410190	2L_3410190_SNP [dm3] 2L_3410190_SNP [dm6]	T	A	3.444e^-4	0.979	UPSTREAM CG8840 INTRON pgant2
3R	22091590	3R_22091590_DEL [dm3] 3R_26265868_DEL [dm6]	AGGAACCCCCATCGTTCGTT...	A	3.458e^-4	0.979	INTRON CG6154
3L	13115020	3L_13115020_SNP [dm3] 3L_13121920_SNP [dm6]	A	G	3.487e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9529365	3R_9529365_SNP [dm3] 3R_13703643_SNP [dm6]	G	A	3.504e^-4	0.979	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
3R	26635038	3R_26635038_SNP [dm3] 3R_30809316_SNP [dm6]	T	G	3.514e^-4	0.979	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	986498	3L_986498_SNP [dm3] 3L_986498_SNP [dm6]	A	T	3.521e^-4	0.979	DOWNSTREAM Glut1 INTRON Glut1
3L	6538327	3L_6538327_SNP [dm3] 3L_6545227_SNP [dm6]	G	A	3.522e^-4	0.979	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_sens
3R	16686211	3R_16686211_SNP [dm3] 3R_20860489_SNP [dm6]	C	G	3.524e^-4	0.979	UTR_3_PRIME CG3822 UPSTREAM Ir93a
3L	8656306	3L_8656306_SNP [dm3] 3L_8663206_SNP [dm6]	C	T	3.529e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14672921	3R_14672921_SNP [dm3] 3R_18847199_SNP [dm6]	G	C	3.530e^-4	0.979	INTRON CG18208
X	20977579	X_20977579_SNP [dm3] X_21106552_SNP [dm6]	T	A	3.532e^-4	0.979	UPSTREAM CG1503 INTRON stg1 & 1 other
2L	12257096	2L_12257096_INS [dm3] 2L_12257096_INS [dm6]	A	ATACTTCT	3.542e^-4	0.979	INTRON aret
X	5544504	X_5544504_SNP [dm3] X_5650471_SNP [dm6]	C	T	3.551e^-4	0.979	DOWNSTREAM CG42265 INTERGENIC
3R	19061006	3R_19061006_SNP [dm3] 3R_23235284_SNP [dm6]	A	T	3.558e^-4	0.979	INTRON CG4467
X	11764120	X_11764120_SNP [dm3] X_11870087_SNP [dm6]	A	G	3.559e^-4	0.979	SYNONYMOUS_CODING CG1847	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3578926	3L_3578926_SNP [dm3] 3L_3578926_SNP [dm6]	C	T	3.561e^-4	0.979	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2040709	3L_2040709_SNP [dm3] 3L_2040709_SNP [dm6]	C	A	3.562e^-4	0.979	INTRON sls
X	11763213	X_11763213_SNP [dm3] X_11869180_SNP [dm6]	T	C	3.562e^-4	0.979	UTR_5_PRIME CG1847 UPSTREAM CG2025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	11035132	2R_11035132_SNP [dm3] 2R_15147627_SNP [dm6]	T	A	3.565e^-4	0.979	SYNONYMOUS_CODING CG8089 UPSTREAM CG7544	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	22376901	3R_22376901_SNP [dm3] 3R_26551179_SNP [dm6]	G	A	3.567e^-4	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16889605	X_16889605_SNP [dm3] X_16995572_SNP [dm6]	G	A	3.576e^-4	0.979	INTRON CG45002	TF binding site mE1_TFBS_HSA
3L	7137811	3L_7137811_SNP [dm3] 3L_7144711_SNP [dm6]	G	A	3.577e^-4	0.979	UTR_3_PRIME corn INTRON corn
X	8275349	X_8275349_DEL [dm3] X_8381316_DEL [dm6]	AATGCACA	A	3.577e^-4	0.979	INTERGENIC
2L	14530944	2L_14530944_SNP [dm3] 2L_14530944_SNP [dm6]	G	A	3.581e^-4	0.979	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14530945	2L_14530945_SNP [dm3] 2L_14530945_SNP [dm6]	C	A	3.581e^-4	0.979	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4364931	3L_4364931_SNP [dm3] 3L_4364931_SNP [dm6]	G	A	3.584e^-4	0.979	SYNONYMOUS_CODING mRpS6 UPSTREAM Cip4 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23882291	3R_23882291_SNP [dm3] 3R_28056569_SNP [dm6]	A	C	3.584e^-4	0.979	INTRON CG34362
3R	26051512	3R_26051512_SNP [dm3] 3R_30225790_SNP [dm6]	C	A	3.591e^-4	0.979	INTERGENIC
X	17233663	X_17233663_SNP [dm3] X_17339630_SNP [dm6]	T	G	3.591e^-4	0.979	INTERGENIC
2R	13494551	2R_13494551_SNP [dm3] 2R_17607046_SNP [dm6]	G	A	3.594e^-4	0.979	SYNONYMOUS_CODING CG10936
3L	15124528	3L_15124528_SNP [dm3] 3L_15131428_SNP [dm6]	T	A	3.594e^-4	0.979	UPSTREAM CG13457 DOWNSTREAM CG12316 INTERGENIC
3R	17348975	3R_17348975_SNP [dm3] 3R_21523253_SNP [dm6]	C	G	3.599e^-4	0.979	SYNONYMOUS_CODING CG7956
3L	7146042	3L_7146042_SNP [dm3] 3L_7152942_SNP [dm6]	A	G	3.607e^-4	0.979	INTRON corn
2R	15342460	2R_15342460_SNP [dm3] 2R_19454955_SNP [dm6]	G	C	3.613e^-4	0.979	NON_SYNONYMOUS_CODING CG7744	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4945297	2L_4945297_SNP [dm3] 2L_4945297_SNP [dm6]	T	A	3.613e^-4	0.979	UTR_5_PRIME mRpL24 UPSTREAM betaggt-I DOWNSTREAM CG14044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4945307	2L_4945307_SNP [dm3] 2L_4945307_SNP [dm6]	G	A	3.613e^-4	0.979	UTR_5_PRIME mRpL24 UPSTREAM betaggt-I	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15995349	3R_15995349_SNP [dm3] 3R_20169627_SNP [dm6]	T	C	3.614e^-4	0.979	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15452167	3L_15452167_SNP [dm3] 3L_15459067_SNP [dm6]	T	A	3.615e^-4	0.979	DOWNSTREAM CR45394 INTERGENIC
2L	13839446	2L_13839446_SNP [dm3] 2L_13839446_SNP [dm6]	T	A	3.617e^-4	0.979	UTR_3_PRIME CG33307 INTRON CenG1A
3L	2561173	3L_2561173_SNP [dm3] 3L_2561173_SNP [dm6]	G	A	3.620e^-4	0.979	INTRON msn
3R	10466537	3R_10466537_SNP [dm3] 3R_14640815_SNP [dm6]	T	C	3.629e^-4	0.979	SYNONYMOUS_CODING Cad88C INTRON CG7886
3R	22094070	3R_22094070_SNP [dm3] 3R_26268348_SNP [dm6]	A	T	3.637e^-4	0.979	INTRON CG6154
3R	26921589	3R_26921589_SNP [dm3] 3R_31095867_SNP [dm6]	A	G	3.637e^-4	0.979	INTRON CG11317
3R	10351632	3R_10351632_SNP [dm3] 3R_14525910_SNP [dm6]	G	A	3.647e^-4	0.979	INTRON Pde6
3R	26399658	3R_26399658_SNP [dm3] 3R_30573936_SNP [dm6]	T	A	3.668e^-4	0.979	UTR_3_PRIME tmod INTRON tmod
2L	17061308	2L_17061308_DEL [dm3] 2L_17061308_DEL [dm6]	CGAGATTAAAAA...	C	3.669e^-4	0.979	INTERGENIC
3L	14920208	3L_14920208_SNP [dm3] 3L_14927108_SNP [dm6]	T	C	3.672e^-4	0.979	INTRON DCX-EMAP
2L	7088883	2L_7088883_SNP [dm3] 2L_7088883_SNP [dm6]	C	T	3.680e^-4	0.979	INTERGENIC
X	482357	X_482357_SNP [dm3] X_588324_SNP [dm6]	C	T	3.690e^-4	0.979	INTRON vnd & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	16949346	3R_16949346_SNP [dm3] 3R_21123624_SNP [dm6]	A	G	3.693e^-4	0.979	INTRON slmb
3L	12630132	3L_12630132_SNP [dm3] 3L_12637032_SNP [dm6]	T	C	3.695e^-4	0.979	INTRON CR32111
3L	12630137	3L_12630137_SNP [dm3] 3L_12637037_SNP [dm6]	A	G	3.695e^-4	0.979	INTRON CR32111
3L	12630143	3L_12630143_SNP [dm3] 3L_12637043_SNP [dm6]	C	T	3.695e^-4	0.979	INTRON CR32111
3R	17478458	3R_17478458_SNP [dm3] 3R_21652736_SNP [dm6]	A	G	3.696e^-4	0.979	INTRON E2f	TF binding site BDTNP1_TFBS_dl
3R	23380289	3R_23380289_SNP [dm3] 3R_27554567_SNP [dm6]	T	C	3.712e^-4	0.979	INTRON Klp98A
2R	12080842	2R_12080842_SNP [dm3] 2R_16193337_SNP [dm6]	A	G	3.716e^-4	0.979	UTR_3_PRIME clu DOWNSTREAM calypso	TF binding site mE1_TFBS_cad
3R	21523271	3R_21523271_SNP [dm3] 3R_25697549_SNP [dm6]	G	A	3.716e^-4	0.979	INTERGENIC
X	5546737	X_5546737_SNP [dm3] X_5652704_SNP [dm6]	C	A	3.717e^-4	0.979	UTR_3_PRIME CG42265
X	11920848	X_11920848_SNP [dm3] X_12026815_SNP [dm6]	A	G	3.717e^-4	0.979	SYNONYMOUS_CODING Usp7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14370674	X_14370674_SNP [dm3] X_14476641_SNP [dm6]	T	G	3.722e^-4	0.979	INTRON CG9411
3R	19277582	3R_19277582_SNP [dm3] 3R_23451860_SNP [dm6]	G	A	3.725e^-4	0.979	INTRON CG4374	TF binding site BDTNP1_TFBS_dl
2L	10196560	2L_10196560_SNP [dm3] 2L_10196560_SNP [dm6]	T	A	3.726e^-4	0.979	INTRON Sur
2L	14349466	2L_14349466_SNP [dm3] 2L_14349466_SNP [dm6]	G	A	3.734e^-4	0.979	SYNONYMOUS_CODING l_2_34Fc UPSTREAM mTTF EXON CR44850
2L	1990920	2L_1990920_SNP [dm3] 2L_1990920_SNP [dm6]	A	G	3.734e^-4	0.979	DOWNSTREAM Obp22a & 1 other INTERGENIC
2L	3379170	2L_3379170_SNP [dm3] 2L_3379170_SNP [dm6]	A	G	3.735e^-4	0.979	DOWNSTREAM Ptpa INTERGENIC
3R	26635207	3R_26635207_SNP [dm3] 3R_30809485_SNP [dm6]	C	T	3.737e^-4	0.979	INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14608628	2L_14608628_SNP [dm3] 2L_14608628_SNP [dm6]	A	T	3.738e^-4	0.979	INTRON osp
X	13551657	X_13551657_SNP [dm3] X_13657624_SNP [dm6]	A	G	3.743e^-4	0.979	INTRON NFAT
2L	17086131	2L_17086131_SNP [dm3] 2L_17086131_SNP [dm6]	T	A	3.743e^-4	0.979	EXON CR43819
3R	18844374	3R_18844374_SNP [dm3] 3R_23018652_SNP [dm6]	C	T	3.747e^-4	0.979	INTERGENIC
2R	11112660	2R_11112660_SNP [dm3] 2R_15225155_SNP [dm6]	G	C	3.754e^-4	0.979	DOWNSTREAM CG8079 INTRON Fs
X	5202611	X_5202611_SNP [dm3] X_5308578_SNP [dm6]	A	T	3.755e^-4	0.979	SYNONYMOUS_CODING Cdk7 UPSTREAM snf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	26899197	3R_26899197_SNP [dm3] 3R_31073475_SNP [dm6]	G	C	3.759e^-4	0.979	INTRON Sox100B
2L	9671911	2L_9671911_SNP [dm3] 2L_9671911_SNP [dm6]	T	A	3.765e^-4	0.979	UPSTREAM CR44150 INTERGENIC
2R	6273503	2R_6273503_SNP [dm3] 2R_10385998_SNP [dm6]	G	T	3.784e^-4	0.979	INTRON CG42732
2L	11951327	2L_11951327_SNP [dm3] 2L_11951327_SNP [dm6]	G	T	3.789e^-4	0.979	DOWNSTREAM CR43314 INTERGENIC
2L	6704964	2L_6704964_SNP [dm3] 2L_6704964_SNP [dm6]	G	T	3.790e^-4	0.979	INTRON Tsp	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	3992381	2L_3992381_SNP [dm3] 2L_3992381_SNP [dm6]	C	T	3.791e^-4	0.979	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17478456	3R_17478456_SNP [dm3] 3R_21652734_SNP [dm6]	G	A	3.792e^-4	0.979	INTRON E2f	TF binding site BDTNP1_TFBS_dl
2R	10135658	2R_10135658_SNP [dm3] 2R_14248153_SNP [dm6]	C	T	3.801e^-4	0.979	SYNONYMOUS_CODING Mdr50
2L	11234461	2L_11234461_SNP [dm3] 2L_11234461_SNP [dm6]	C	A	3.808e^-4	0.979	UPSTREAM snoRNA:Me18S-G642 & 1 other INTRON ab	TF binding site mE1_TFBS_cnc
3L	23788766	3L_23788766_INS [dm3] 3L_23795666_INS [dm6]	T	TGTT	3.809e^-4	0.979	INTERGENIC	transposable element FlyBase
2L	21991947	2L_21991947_SNP [dm3] 2L_21991947_SNP [dm6]	G	A	3.813e^-4	0.979	SYNONYMOUS_CODING CG2528	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	3.826e^-4	0.979	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8519816	3R_8519816_SNP [dm3] 3R_12694094_SNP [dm6]	C	A	3.829e^-4	0.979	UTR_3_PRIME Arp1 DOWNSTREAM CG14391
3R	27527501	3R_27527501_SNP [dm3] 3R_31701779_SNP [dm6]	G	T	3.837e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_sens
2L	6328811	2L_6328811_SNP [dm3] 2L_6328811_SNP [dm6]	G	A	3.839e^-4	0.979	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
3R	25675580	3R_25675580_SNP [dm3] 3R_29849858_SNP [dm6]	A	C	3.843e^-4	0.979	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16686168	3R_16686168_SNP [dm3] 3R_20860446_SNP [dm6]	T	C	3.844e^-4	0.979	UTR_3_PRIME CG3822 UPSTREAM Ir93a
X	12280544	X_12280544_SNP [dm3] X_12386511_SNP [dm6]	G	A	3.848e^-4	0.979	INTERGENIC
3R	26908175	3R_26908175_SNP [dm3] 3R_31082453_SNP [dm6]	T	C	3.856e^-4	0.979	SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10293351	3R_10293351_SNP [dm3] 3R_14467629_SNP [dm6]	C	T	3.858e^-4	0.979	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20291566	3R_20291566_SNP [dm3] 3R_24465844_SNP [dm6]	A	G	3.861e^-4	0.979	INTERGENIC
2L	6243510	2L_6243510_SNP [dm3] 2L_6243510_SNP [dm6]	G	T	3.884e^-4	0.979	INTERGENIC
3R	18844299	3R_18844299_SNP [dm3] 3R_23018577_SNP [dm6]	T	G	3.887e^-4	0.979	INTERGENIC
2R	8693340	2R_8693340_SNP [dm3] 2R_12805835_SNP [dm6]	A	T	3.891e^-4	0.979	UPSTREAM CG17580 INTERGENIC
3R	16907491	3R_16907491_SNP [dm3] 3R_21081769_SNP [dm6]	T	C	3.894e^-4	0.979	UPSTREAM HHEX INTERGENIC
3R	15045691	3R_15045691_SNP [dm3] 3R_19219969_SNP [dm6]	G	T	3.902e^-4	0.979	INTRON vib
3R	26852397	3R_26852397_SNP [dm3] 3R_31026675_SNP [dm6]	G	T	3.903e^-4	0.979	INTERGENIC
X	11763481	X_11763481_SNP [dm3] X_11869448_SNP [dm6]	G	C	3.903e^-4	0.979	UPSTREAM CG2025 INTRON CG1847	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9949880	2L_9949880_SNP [dm3] 2L_9949880_SNP [dm6]	A	G	3.904e^-4	0.979	DOWNSTREAM mir-87 INTERGENIC
X	16716716	X_16716716_SNP [dm3] X_16822683_SNP [dm6]	C	T	3.908e^-4	0.979	SYNONYMOUS_CODING CG4829 START_GAINED CG4829 UTR_5_PRIME CG4829
3R	15096761	3R_15096761_SNP [dm3] 3R_19271039_SNP [dm6]	G	A	3.909e^-4	0.979	INTERGENIC
3R	18626468	3R_18626468_SNP [dm3] 3R_22800746_SNP [dm6]	A	G	3.916e^-4	0.979	INTERGENIC
3R	22808536	3R_22808536_SNP [dm3] 3R_26982814_SNP [dm6]	A	T	3.917e^-4	0.979	INTRON CG14253
2L	14320236	2L_14320236_SNP [dm3] 2L_14320236_SNP [dm6]	C	T	3.919e^-4	0.979	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	16880460	3R_16880460_SNP [dm3] 3R_21054738_SNP [dm6]	A	C	3.921e^-4	0.979	UTR_3_PRIME Mvl INTRON Mvl
2L	14255106	2L_14255106_SNP [dm3] 2L_14255106_SNP [dm6]	T	C	3.922e^-4	0.979	INTERGENIC
2L	3327564	2L_3327564_SNP [dm3] 2L_3327564_SNP [dm6]	A	G	3.924e^-4	0.979	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
3R	26555626	3R_26555626_SNP [dm3] 3R_30729904_SNP [dm6]	T	G	3.942e^-4	0.979	UTR_3_PRIME CG11313	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	21146676	3R_21146676_SNP [dm3] 3R_25320954_SNP [dm6]	A	T	3.943e^-4	0.979	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
3L	18148392	3L_18148392_SNP [dm3] 3L_18155292_SNP [dm6]	A	G	3.946e^-4	0.979	SYNONYMOUS_CODING CG13699
2L	10912562	2L_10912562_SNP [dm3] 2L_10912562_SNP [dm6]	C	T	3.950e^-4	0.979	INTERGENIC
X	20198980	X_20198980_SNP [dm3] X_20327953_SNP [dm6]	G	T	3.954e^-4	0.979	NON_SYNONYMOUS_CODING CG1631 INTRON CG1504
3R	23884719	3R_23884719_SNP [dm3] 3R_28058997_SNP [dm6]	G	A	3.955e^-4	0.979	INTRON CG34362
2R	13224215	2R_13224215_SNP [dm3] 2R_17336710_SNP [dm6]	G	A	3.962e^-4	0.979	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12643559	2L_12643559_SNP [dm3] 2L_12643559_SNP [dm6]	A	G	3.972e^-4	0.979	INTRON Ref2
3R	26285124	3R_26285124_SNP [dm3] 3R_30459402_SNP [dm6]	A	C	3.989e^-4	0.979	UPSTREAM CDase & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16805259	3R_16805259_SNP [dm3] 3R_20979537_SNP [dm6]	A	C	4.004e^-4	0.979	INTRON Calx
X	17901055	X_17901055_SNP [dm3] X_18007022_SNP [dm6]	A	G	4.020e^-4	0.979	SYNONYMOUS_CODING CG12672 INTRON Sh
3L	4038087	3L_4038087_DEL [dm3] 3L_4038087_DEL [dm6]	TGGTACCATTATGTATGTGG...	T	4.021e^-4	0.979	UTR_3_PRIME CG11593 DOWNSTREAM Gr64f	TF binding site mE1_TFBS_cad
2L	6243980	2L_6243980_SNP [dm3] 2L_6243980_SNP [dm6]	C	G	4.026e^-4	0.979	INTERGENIC
3R	10278743	3R_10278743_SNP [dm3] 3R_14453021_SNP [dm6]	C	T	4.083e^-4	0.979	INTRON cv-c	TF binding site mE1_TFBS_inv
3L	4383368	3L_4383368_SNP [dm3] 3L_4383368_SNP [dm6]	A	T	4.088e^-4	0.979	INTERGENIC
3L	17722536	3L_17722536_SNP [dm3] 3L_17729436_SNP [dm6]	G	A	4.092e^-4	0.979	UPSTREAM CG6052 INTRON Ccn
2R	6415121	2R_6415121_SNP [dm3] 2R_10527616_SNP [dm6]	A	C	4.113e^-4	0.979	INTRON lola
3R	8566868	3R_8566868_SNP [dm3] 3R_12741146_SNP [dm6]	A	C	4.114e^-4	0.979	SYNONYMOUS_CODING CG5724 DOWNSTREAM CG5999
2L	9158804	2L_9158804_SNP [dm3] 2L_9158804_SNP [dm6]	T	G	4.121e^-4	0.979	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	17362934	3R_17362934_SNP [dm3] 3R_21537212_SNP [dm6]	T	A	4.122e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12638336	2L_12638336_SNP [dm3] 2L_12638336_SNP [dm6]	A	G	4.127e^-4	0.979	INTRON Ref2	TF binding site BDTNP1_TFBS_twi
3L	9637162	3L_9637162_SNP [dm3] 3L_9644062_SNP [dm6]	T	C	4.128e^-4	0.979	UPSTREAM CG33696 INTRON fry
3L	2287961	3L_2287961_SNP [dm3] 3L_2287961_SNP [dm6]	T	C	4.129e^-4	0.979	INTRON MsR2
2R	9215930	2R_9215930_DEL [dm3] 2R_13328425_DEL [dm6]	CTACAAAT	C	4.131e^-4	0.979	DOWNSTREAM CR44206 & 1 other INTERGENIC
3R	26894701	3R_26894701_SNP [dm3] 3R_31068979_SNP [dm6]	C	T	4.136e^-4	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	26285167	3R_26285167_SNP [dm3] 3R_30459445_SNP [dm6]	T	C	4.139e^-4	0.979	UPSTREAM CDase & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
X	16922023	X_16922023_SNP [dm3] X_17027990_SNP [dm6]	A	G	4.142e^-4	0.979	INTRON CG45002
X	16922074	X_16922074_SNP [dm3] X_17028041_SNP [dm6]	A	G	4.142e^-4	0.979	INTRON CG45002
3R	26496285	3R_26496285_SNP [dm3] 3R_30670563_SNP [dm6]	G	A	4.151e^-4	0.979	INTERGENIC
3L	2484863	3L_2484863_INS [dm3] 3L_2484863_INS [dm6]	G	GTTAG	4.151e^-4	0.979	INTRON CG45186	TF binding site mE1_TFBS_cad
3L	7987814	3L_7987814_SNP [dm3] 3L_7994714_SNP [dm6]	T	A	4.162e^-4	0.979	INTRON nmo
2R	13122096	2R_13122096_SNP [dm3] 2R_17234591_SNP [dm6]	T	C	4.170e^-4	0.979	INTRON mbl
2L	714159	2L_714159_SNP [dm3] 2L_714159_SNP [dm6]	C	A	4.174e^-4	0.979	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	22155487	X_22155487_SNP [dm3] X_22753651_SNP [dm6]	A	G	4.174e^-4	0.979	INTRON CR44997	transposable element FlyBase
2L	17412832	2L_17412832_SNP [dm3] 2L_17412832_SNP [dm6]	C	T	4.179e^-4	0.979	SYNONYMOUS_CODING CG15141 UPSTREAM CG31803 DOWNSTREAM Dif
3R	26263068	3R_26263068_SNP [dm3] 3R_30437346_SNP [dm6]	C	T	4.182e^-4	0.979	INTRON CG15537
2L	15650625	2L_15650625_SNP [dm3] 2L_15650625_SNP [dm6]	A	G	4.199e^-4	0.979	SYNONYMOUS_CODING CG4587	TF binding site mE1_TFBS_inv
3L	1368889	3L_1368889_DEL [dm3] 3L_1368889_DEL [dm6]	AA	A	4.199e^-4	0.979	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26635077	3R_26635077_SNP [dm3] 3R_30809355_SNP [dm6]	C	T	4.202e^-4	0.979	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17722602	3L_17722602_SNP [dm3] 3L_17729502_SNP [dm6]	T	A	4.203e^-4	0.979	UPSTREAM CG6052 INTRON Ccn
2L	22113094	2L_22113094_INS [dm3] 2L_22113094_INS [dm6]	C	CCAAAGACCCTAGAATTCTA...	4.207e^-4	0.979	INTERGENIC	transposable element FlyBase
3R	27215391	3R_27215391_SNP [dm3] 3R_31389669_SNP [dm6]	C	A	4.208e^-4	0.979	SYNONYMOUS_CODING CG1607	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7544358	2R_7544358_SNP [dm3] 2R_11656853_SNP [dm6]	A	G	4.210e^-4	0.979	INTRON Roc2
X	4233563	X_4233563_SNP [dm3] X_4339530_SNP [dm6]	C	T	4.210e^-4	0.979	INTRON norpA
X	13398306	X_13398306_INS [dm3] X_13504273_INS [dm6]	C	CC	4.215e^-4	0.979	INTRON Neto	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3440777	3L_3440777_SNP [dm3] 3L_3440777_SNP [dm6]	G	A	4.231e^-4	0.979	INTRON eIF5B	TF binding site mE1_TFBS_HSA
3L	6374552	3L_6374552_SNP [dm3] 3L_6381452_SNP [dm6]	C	T	4.237e^-4	0.979	INTERGENIC
3R	26332116	3R_26332116_SNP [dm3] 3R_30506394_SNP [dm6]	A	C	4.237e^-4	0.979	UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other INTRON CG15539
3R	24033537	3R_24033537_SNP [dm3] 3R_28207815_SNP [dm6]	A	G	4.237e^-4	0.979	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10793931	2L_10793931_SNP [dm3] 2L_10793931_SNP [dm6]	T	A	4.238e^-4	0.979	INTRON CG31869
3L	7987843	3L_7987843_SNP [dm3] 3L_7994743_SNP [dm6]	A	C	4.242e^-4	0.979	INTRON nmo
3R	14672990	3R_14672990_SNP [dm3] 3R_18847268_SNP [dm6]	G	A	4.251e^-4	0.979	INTRON CG18208
2L	12855282	2L_12855282_SNP [dm3] 2L_12855282_SNP [dm6]	A	T	4.258e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11079751	2R_11079751_SNP [dm3] 2R_15192246_SNP [dm6]	C	G	4.258e^-4	0.979	DOWNSTREAM Sfp51E INTERGENIC
3R	18356606	3R_18356606_SNP [dm3] 3R_22530884_SNP [dm6]	T	C	4.266e^-4	0.979	NON_SYNONYMOUS_CODING CG33093 UPSTREAM CG33099	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11952251	2L_11952251_SNP [dm3] 2L_11952251_SNP [dm6]	C	G	4.266e^-4	0.979	EXON CR43314
2L	15650539	2L_15650539_SNP [dm3] 2L_15650539_SNP [dm6]	A	G	4.273e^-4	0.979	SYNONYMOUS_CODING CG4587	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15045687	3R_15045687_SNP [dm3] 3R_19219965_SNP [dm6]	A	G	4.277e^-4	0.979	INTRON vib
3R	20349233	3R_20349233_SNP [dm3] 3R_24523511_SNP [dm6]	C	G	4.278e^-4	0.979	UTR_5_PRIME CG13622	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12487331	2L_12487331_SNP [dm3] 2L_12487331_SNP [dm6]	G	A	4.282e^-4	0.979	INTRON bun
2L	18551428	2L_18551428_SNP [dm3] 2L_18551428_SNP [dm6]	G	C	4.293e^-4	0.979	INTRON Pde11
2L	14320233	2L_14320233_SNP [dm3] 2L_14320233_SNP [dm6]	T	C	4.296e^-4	0.979	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7146057	3L_7146057_SNP [dm3] 3L_7152957_SNP [dm6]	G	C	4.307e^-4	0.979	INTRON corn
2L	8661078	2L_8661078_SNP [dm3] 2L_8661078_SNP [dm6]	T	A	4.310e^-4	0.979	INTRON Sema-1a
X	512080	X_512080_SNP [dm3] X_618047_SNP [dm6]	T	A	4.328e^-4	0.979	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	18402222	3R_18402222_SNP [dm3] 3R_22576500_SNP [dm6]	A	T	4.332e^-4	0.979	INTRON CG33110
3R	16949388	3R_16949388_SNP [dm3] 3R_21123666_SNP [dm6]	A	T	4.334e^-4	0.979	INTRON slmb
3R	16942881	3R_16942881_SNP [dm3] 3R_21117159_SNP [dm6]	A	G	4.335e^-4	0.979	SYNONYMOUS_CODING ppan DOWNSTREAM Bdbt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10555275	2L_10555275_SNP [dm3] 2L_10555275_SNP [dm6]	G	T	4.336e^-4	0.979	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14374247	X_14374247_SNP [dm3] X_14480214_SNP [dm6]	A	G	4.352e^-4	0.979	UPSTREAM CG9411 INTERGENIC
2R	14418038	2R_14418038_SNP [dm3] 2R_18530533_SNP [dm6]	A	C	4.353e^-4	0.979	INTRON CG10924	TF binding site BDTNP1_TFBS_twi
2R	20161110	2R_20161110_SNP [dm3] 2R_24273587_SNP [dm6]	C	G	4.358e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	9487687	2L_9487687_SNP [dm3] 2L_9487687_SNP [dm6]	C	T	4.362e^-4	0.979	INTERGENIC
2L	6005436	2L_6005436_SNP [dm3] 2L_6005436_SNP [dm6]	C	T	4.376e^-4	0.979	SYNONYMOUS_CODING Gal EXON CR43866	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	19614485	2R_19614485_SNP [dm3] 2R_23726962_SNP [dm6]	G	A	4.376e^-4	0.979	INTRON Sesn
2L	12855572	2L_12855572_DEL [dm3] 2L_12855572_DEL [dm6]	TGTTT	T	4.388e^-4	0.979	INTERGENIC
3R	24197095	3R_24197095_SNP [dm3] 3R_28371373_SNP [dm6]	T	A	4.398e^-4	0.979	INTERGENIC
2R	10089520	2R_10089520_SNP [dm3] 2R_14202015_SNP [dm6]	A	T	4.401e^-4	0.979	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1310473	3L_1310473_SNP [dm3] 3L_1310473_SNP [dm6]	T	G	4.404e^-4	0.979	INTRON CG2469	TF binding site mE1_TFBS_cad
3L	4047366	3L_4047366_SNP [dm3] 3L_4047366_SNP [dm6]	A	C	4.410e^-4	0.979	NON_SYNONYMOUS_CODING Dpy-30L2 INTRON CG1136
3R	18711783	3R_18711783_SNP [dm3] 3R_22886061_SNP [dm6]	T	C	4.423e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10405506	3L_10405506_SNP [dm3] 3L_10412406_SNP [dm6]	G	A	4.430e^-4	0.979	UPSTREAM CG12362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	26909948	3R_26909948_SNP [dm3] 3R_31084226_SNP [dm6]	G	C	4.456e^-4	0.979	DOWNSTREAM Sox100B INTERGENIC
X	10111849	X_10111849_INS [dm3] X_10217816_INS [dm6]	A	AG	4.475e^-4	0.979	UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3R	27389297	3R_27389297_INS [dm3] 3R_31563575_INS [dm6]	T	TAG	4.483e^-4	0.979	INTRON nyo
3R	23882236	3R_23882236_SNP [dm3] 3R_28056514_SNP [dm6]	C	T	4.490e^-4	0.979	INTRON CG34362
2R	7286612	2R_7286612_SNP [dm3] 2R_11399107_SNP [dm6]	T	C	4.500e^-4	0.979	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9376056	3L_9376056_SNP [dm3] 3L_9382956_SNP [dm6]	T	A	4.504e^-4	0.979	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3408523	2L_3408523_SNP [dm3] 2L_3408523_SNP [dm6]	C	T	4.509e^-4	0.979	INTRON pgant2
3R	23968226	3R_23968226_SNP [dm3] 3R_28142504_SNP [dm6]	T	A	4.509e^-4	0.979	INTERGENIC
X	11762948	X_11762948_SNP [dm3] X_11868915_SNP [dm6]	C	G	4.517e^-4	0.979	UPSTREAM CG1847 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	24696274	3R_24696274_SNP [dm3] 3R_28870552_SNP [dm6]	C	T	4.521e^-4	0.979	DOWNSTREAM CG33203 & 1 other INTERGENIC
2R	10813953	2R_10813953_SNP [dm3] 2R_14926448_SNP [dm6]	A	C	4.532e^-4	0.979	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27389292	3R_27389292_DEL [dm3] 3R_31563570_DEL [dm6]	TATCT	T	4.533e^-4	0.979	INTRON nyo
2R	10647300	2R_10647300_SNP [dm3] 2R_14759795_SNP [dm6]	T	G	4.534e^-4	0.979	UTR_3_PRIME Spred UPSTREAM CG12857
3L	13323790	3L_13323790_SNP [dm3] 3L_13330690_SNP [dm6]	T	A	4.546e^-4	0.979	DOWNSTREAM CG14113 INTERGENIC
3R	26870543	3R_26870543_SNP [dm3] 3R_31044821_SNP [dm6]	A	T	4.549e^-4	0.979	INTRON CanA1 & 1 other
3R	23924205	3R_23924205_SNP [dm3] 3R_28098483_SNP [dm6]	A	G	4.559e^-4	0.979	INTERGENIC
3R	21105045	3R_21105045_SNP [dm3] 3R_25279323_SNP [dm6]	T	C	4.560e^-4	0.979	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	510560	X_510560_SNP [dm3] X_616527_SNP [dm6]	G	T	4.560e^-4	0.979	INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16949006	3R_16949006_SNP [dm3] 3R_21123284_SNP [dm6]	G	A	4.576e^-4	0.979	INTRON slmb
2R	6761105	2R_6761105_SNP [dm3] 2R_10873600_SNP [dm6]	T	A	4.587e^-4	0.979	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2R	15776378	2R_15776378_SNP [dm3] 2R_19888873_SNP [dm6]	G	T	4.590e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14155674	2R_14155674_SNP [dm3] 2R_18268169_SNP [dm6]	C	T	4.615e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2461883	2L_2461883_SNP [dm3] 2L_2461883_SNP [dm6]	C	A	4.617e^-4	0.979	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21146645	3R_21146645_SNP [dm3] 3R_25320923_SNP [dm6]	A	C	4.619e^-4	0.979	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
2L	7055696	2L_7055696_SNP [dm3] 2L_7055696_SNP [dm6]	G	A	4.621e^-4	0.979	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19493630	2R_19493630_SNP [dm3] 2R_23606107_SNP [dm6]	G	A	4.627e^-4	0.979	SYNONYMOUS_CODING CG17662 UPSTREAM CG17664 INTRON CG17664
3R	25520810	3R_25520810_SNP [dm3] 3R_29695088_SNP [dm6]	T	C	4.632e^-4	0.979	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18412367	X_18412367_SNP [dm3] X_18518334_SNP [dm6]	T	C	4.633e^-4	0.979	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
X	10111842	X_10111842_DEL [dm3] X_10217809_DEL [dm6]	CGTG	T	4.636e^-4	0.979	UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
X	19305393	X_19305393_SNP [dm3] X_19411360_SNP [dm6]	T	C	4.637e^-4	0.979	INTRON kek5
3L	11879476	3L_11879476_SNP [dm3] 3L_11886376_SNP [dm6]	A	T	4.646e^-4	0.979	DOWNSTREAM CG5897 INTRON CG44837
X	8960758	X_8960758_SNP [dm3] X_9066725_SNP [dm6]	T	C	4.653e^-4	0.979	INTRON CG15365
2R	7408003	2R_7408003_SNP [dm3] 2R_11520498_SNP [dm6]	T	C	4.658e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3299949	2L_3299949_SNP [dm3] 2L_3299949_SNP [dm6]	C	A	4.662e^-4	0.979	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10026627	2L_10026627_SNP [dm3] 2L_10026627_SNP [dm6]	C	T	4.664e^-4	0.979	UPSTREAM CG13127 INTERGENIC
3L	10597078	3L_10597078_SNP [dm3] 3L_10603978_SNP [dm6]	C	T	4.665e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23934030	3R_23934030_SNP [dm3] 3R_28108308_SNP [dm6]	G	A	4.673e^-4	0.979	INTERGENIC
2R	10030838	2R_10030838_SNP [dm3] 2R_14143333_SNP [dm6]	G	A	4.674e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	15770460	2L_15770460_SNP [dm3] 2L_15770460_SNP [dm6]	T	C	4.685e^-4	0.979	SYNONYMOUS_CODING Ku80 DOWNSTREAM CG31826
2L	19590589	2L_19590589_SNP [dm3] 2L_19590589_SNP [dm6]	T	G	4.686e^-4	0.979	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3578864	3L_3578864_SNP [dm3] 3L_3578864_SNP [dm6]	G	A	4.687e^-4	0.979	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11951289	2L_11951289_SNP [dm3] 2L_11951289_SNP [dm6]	T	C	4.691e^-4	0.979	DOWNSTREAM CR43314 INTERGENIC
3R	23549281	3R_23549281_SNP [dm3] 3R_27723559_SNP [dm6]	G	A	4.696e^-4	0.979	INTERGENIC
3R	15279967	3R_15279967_SNP [dm3] 3R_19454245_SNP [dm6]	A	C	4.696e^-4	0.979	SYNONYMOUS_CODING CG31221
2L	1991392	2L_1991392_SNP [dm3] 2L_1991392_SNP [dm6]	T	C	4.697e^-4	0.979	UTR_3_PRIME Obp22a DOWNSTREAM Obp22a & 1 other
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	4.706e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12169560	2R_12169560_SNP [dm3] 2R_16282055_SNP [dm6]	T	C	4.708e^-4	0.979	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27481076	3R_27481076_SNP [dm3] 3R_31655354_SNP [dm6]	A	C	4.715e^-4	0.979	INTRON kek6
3R	22090827	3R_22090827_SNP [dm3] 3R_26265105_SNP [dm6]	C	T	4.721e^-4	0.979	INTRON CG6154
2R	11282888	2R_11282888_SNP [dm3] 2R_15395383_SNP [dm6]	G	C	4.723e^-4	0.979	INTERGENIC
3R	8519734	3R_8519734_SNP [dm3] 3R_12694012_SNP [dm6]	T	C	4.731e^-4	0.979	UTR_3_PRIME Arp1 DOWNSTREAM CG14391	TF binding site mE1_TFBS_HSA
3R	17349128	3R_17349128_SNP [dm3] 3R_21523406_SNP [dm6]	C	T	4.731e^-4	0.979	SYNONYMOUS_CODING CG7956
2R	10862926	2R_10862926_SNP [dm3] 2R_14975421_SNP [dm6]	C	T	4.732e^-4	0.979	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16679229	3R_16679229_SNP [dm3] 3R_20853507_SNP [dm6]	G	A	4.743e^-4	0.979	NON_SYNONYMOUS_CODING Ir93a SPLICE_SITE_REGION Ir93a UPSTREAM mir-1011
3L	9623813	3L_9623813_SNP [dm3] 3L_9630713_SNP [dm6]	T	C	4.752e^-4	0.979	INTRON CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9623986	3L_9623986_SNP [dm3] 3L_9630886_SNP [dm6]	C	T	4.757e^-4	0.979	SYNONYMOUS_CODING CG8336 DOWNSTREAM fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11002112	2R_11002112_SNP [dm3] 2R_15114607_SNP [dm6]	A	C	4.759e^-4	0.979	UPSTREAM chn INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18233298	3R_18233298_SNP [dm3] 3R_22407576_SNP [dm6]	A	G	4.781e^-4	0.979	SYNONYMOUS_CODING CG13855 DOWNSTREAM CG13850
2R	7289639	2R_7289639_SNP [dm3] 2R_11402134_SNP [dm6]	C	A	4.783e^-4	0.979	INTERGENIC
3R	27682438	3R_27682438_SNP [dm3] 3R_31856716_SNP [dm6]	C	A	4.790e^-4	0.979	INTRON heph
X	9918651	X_9918651_SNP [dm3] X_10024618_SNP [dm6]	A	G	4.797e^-4	0.979	INTRON Cht6
2L	11951310	2L_11951310_SNP [dm3] 2L_11951310_SNP [dm6]	G	A	4.804e^-4	0.979	DOWNSTREAM CR43314 INTERGENIC
2L	9669855	2L_9669855_SNP [dm3] 2L_9669855_SNP [dm6]	G	A	4.813e^-4	0.979	EXON CR44150
2R	10089830	2R_10089830_SNP [dm3] 2R_14202325_SNP [dm6]	C	G	4.817e^-4	0.979	NON_SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23968227	3R_23968227_SNP [dm3] 3R_28142505_SNP [dm6]	A	T	4.820e^-4	0.979	INTERGENIC
2L	10066965	2L_10066965_SNP [dm3] 2L_10066965_SNP [dm6]	A	G	4.821e^-4	0.979	INTRON CG44153
3R	27686287	3R_27686287_SNP [dm3] 3R_31860565_SNP [dm6]	A	T	4.828e^-4	0.979	INTRON heph
3L	2185335	3L_2185335_SNP [dm3] 3L_2185335_SNP [dm6]	C	G	4.833e^-4	0.979	UPSTREAM CG13810 INTERGENIC
2L	802472	2L_802472_SNP [dm3] 2L_802472_SNP [dm6]	G	A	4.834e^-4	0.979	INTERGENIC
3L	13817835	3L_13817835_SNP [dm3] 3L_13824735_SNP [dm6]	C	A	4.837e^-4	0.979	INTERGENIC
3R	17567575	3R_17567575_SNP [dm3] 3R_21741853_SNP [dm6]	C	A	4.841e^-4	0.979	INTRON CG5849
3L	386617	3L_386617_SNP [dm3] 3L_386617_SNP [dm6]	C	T	4.843e^-4	0.979	INTRON trh
X	515798	X_515798_SNP [dm3] X_621765_SNP [dm6]	C	T	4.843e^-4	0.979	UTR_5_PRIME mod_r_ UPSTREAM mod_r_ & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	24010066	3R_24010066_SNP [dm3] 3R_28184344_SNP [dm6]	T	G	4.844e^-4	0.979	INTRON CG34354
3L	4365135	3L_4365135_SNP [dm3] 3L_4365135_SNP [dm6]	T	C	4.844e^-4	0.979	SYNONYMOUS_CODING mRpS6 UPSTREAM CG33514	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25985652	3R_25985652_SNP [dm3] 3R_30159930_SNP [dm6]	A	G	4.846e^-4	0.979	INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26871220	3R_26871220_SNP [dm3] 3R_31045498_SNP [dm6]	C	A	4.849e^-4	0.979	UPSTREAM CG33920 INTRON CanA1
X	14374199	X_14374199_SNP [dm3] X_14480166_SNP [dm6]	A	T	4.858e^-4	0.979	UPSTREAM CG9411 INTERGENIC
2R	7518711	2R_7518711_SNP [dm3] 2R_11631206_SNP [dm6]	T	G	4.858e^-4	0.979	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20966392	2L_20966392_SNP [dm3] 2L_20966392_SNP [dm6]	C	A	4.860e^-4	0.979	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
3R	26678992	3R_26678992_SNP [dm3] 3R_30853270_SNP [dm6]	C	T	4.868e^-4	0.979	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9921202	3L_9921202_SNP [dm3] 3L_9928102_SNP [dm6]	A	G	4.873e^-4	0.979	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26897776	3R_26897776_SNP [dm3] 3R_31072054_SNP [dm6]	A	G	4.877e^-4	0.979	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9656173	X_9656173_SNP [dm3] X_9762140_SNP [dm6]	T	A	4.895e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	21126986	3R_21126986_SNP [dm3] 3R_25301264_SNP [dm6]	C	G	4.897e^-4	0.979	NON_SYNONYMOUS_CODING CG13659
2L	2396456	2L_2396456_SNP [dm3] 2L_2396456_SNP [dm6]	T	G	4.905e^-4	0.979	INTRON VGlut
2L	4726974	2L_4726974_SNP [dm3] 2L_4726974_SNP [dm6]	T	A	4.909e^-4	0.979	INTERGENIC
3R	25508934	3R_25508934_SNP [dm3] 3R_29683212_SNP [dm6]	G	A	4.915e^-4	0.979	UPSTREAM CG7582 INTRON Gycalpha99B	TF binding site mE1_TFBS_cad
3R	18236276	3R_18236276_SNP [dm3] 3R_22410554_SNP [dm6]	G	C	4.920e^-4	0.979	NON_SYNONYMOUS_CODING CG13850 UPSTREAM lqfR	TF binding site BDTNP1_TFBS_twi
2L	12855146	2L_12855146_SNP [dm3] 2L_12855146_SNP [dm6]	T	C	4.926e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4112267	X_4112267_SNP [dm3] X_4218234_SNP [dm6]	T	C	4.927e^-4	0.979	SYNONYMOUS_CODING CG15570 UPSTREAM CG15571	TF binding site mE1_TFBS_sens
3L	5813057	3L_5813057_SNP [dm3] 3L_5819957_SNP [dm6]	T	C	4.928e^-4	0.979	INTRON vn
2L	9628665	2L_9628665_SNP [dm3] 2L_9628665_SNP [dm6]	C	A	4.937e^-4	0.979	INTERGENIC
3L	4113409	3L_4113409_SNP [dm3] 3L_4113409_SNP [dm6]	G	C	4.941e^-4	0.979	SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14373234	X_14373234_SNP [dm3] X_14479201_SNP [dm6]	C	A	4.950e^-4	0.979	INTRON CG9411
2L	11140027	2L_11140027_SNP [dm3] 2L_11140027_SNP [dm6]	G	A	4.952e^-4	0.979	SYNONYMOUS_CODING Gyc32E
X	483958	X_483958_SNP [dm3] X_589925_SNP [dm6]	A	T	4.954e^-4	0.979	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1422950	2R_1422950_SNP [dm3] 2R_5535445_SNP [dm6]	A	C	4.955e^-4	0.979	INTRON CG30438	transposable element FlyBase
3R	18233304	3R_18233304_SNP [dm3] 3R_22407582_SNP [dm6]	C	T	4.956e^-4	0.979	SYNONYMOUS_CODING CG13855 DOWNSTREAM CG13850
2L	7215687	2L_7215687_SNP [dm3] 2L_7215687_SNP [dm6]	A	C	4.956e^-4	0.979	INTRON CG13784
X	9448166	X_9448166_SNP [dm3] X_9554133_SNP [dm6]	C	A	4.961e^-4	0.979	UPSTREAM RpS28b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	22029966	3R_22029966_SNP [dm3] 3R_26204244_SNP [dm6]	T	C	4.970e^-4	0.979	INTRON CR44320
2R	12786452	2R_12786452_INS [dm3] 2R_16898947_INS [dm6]	T	TT	4.981e^-4	0.979	INTRON inaC
3L	7858776	3L_7858776_SNP [dm3] 3L_7865676_SNP [dm6]	T	A	4.984e^-4	0.979	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	10819106	2R_10819106_SNP [dm3] 2R_14931601_SNP [dm6]	A	G	5.001e^-4	0.979	SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_sens
3R	18402281	3R_18402281_SNP [dm3] 3R_22576559_SNP [dm6]	A	G	5.002e^-4	0.979	INTRON CG33110
2L	679892	2L_679892_SNP [dm3] 2L_679892_SNP [dm6]	A	G	5.003e^-4	0.979	INTRON ds
3R	16875708	3R_16875708_SNP [dm3] 3R_21049986_SNP [dm6]	A	G	5.005e^-4	0.979	DOWNSTREAM CG17279 INTERGENIC
3R	23402479	3R_23402479_DEL [dm3] 3R_27576757_DEL [dm6]	ACA	A	5.010e^-4	0.979	INTRON wdb
3R	24036963	3R_24036963_SNP [dm3] 3R_28211241_SNP [dm6]	G	T	5.028e^-4	0.979	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6877633	3R_6877633_SNP [dm3] 3R_11051911_SNP [dm6]	C	T	5.029e^-4	0.979	INTERGENIC
3R	26263084	3R_26263084_SNP [dm3] 3R_30437362_SNP [dm6]	T	C	5.032e^-4	0.979	INTRON CG15537
X	17692165	X_17692165_SNP [dm3] X_17798132_SNP [dm6]	C	A	5.034e^-4	0.979	INTRON OdsH
3R	22372014	3R_22372014_SNP [dm3] 3R_26546292_SNP [dm6]	T	A	5.053e^-4	0.979	INTRON scrib
X	7648546	X_7648546_SNP [dm3] X_7754513_SNP [dm6]	A	G	5.061e^-4	0.979	INTERGENIC
3R	26138938	3R_26138938_SNP [dm3] 3R_30313216_SNP [dm6]	C	T	5.062e^-4	0.979	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5331615	X_5331615_SNP [dm3] X_5437582_SNP [dm6]	A	C	5.064e^-4	0.979	INTERGENIC
3R	26285163	3R_26285163_SNP [dm3] 3R_30459441_SNP [dm6]	T	A	5.067e^-4	0.979	UPSTREAM CDase & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
X	3342685	X_3342685_SNP [dm3] X_3448652_SNP [dm6]	C	T	5.082e^-4	0.979	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_prd
2L	1451831	2L_1451831_SNP [dm3] 2L_1451831_SNP [dm6]	G	T	5.099e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9130476	X_9130476_SNP [dm3] X_9236443_SNP [dm6]	A	G	5.101e^-4	0.979	SYNONYMOUS_CODING Ir8a DOWNSTREAM mir-4916 & 1 other
3R	16949251	3R_16949251_SNP [dm3] 3R_21123529_SNP [dm6]	A	G	5.105e^-4	0.979	INTRON slmb
2L	10860937	2L_10860937_SNP [dm3] 2L_10860937_SNP [dm6]	T	A	5.110e^-4	0.979	INTRON Stam	TF binding site mE1_TFBS_cad
3L	22583307	3L_22583307_SNP [dm3] 3L_22590207_SNP [dm6]	A	G	5.111e^-4	0.979	INTRON CG14459
2L	4945852	2L_4945852_SNP [dm3] 2L_4945852_SNP [dm6]	T	C	5.114e^-4	0.979	UPSTREAM mRpL24 INTRON betaggt-I	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10112972	2R_10112972_SNP [dm3] 2R_14225467_SNP [dm6]	G	C	5.123e^-4	0.979	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2R	14043329	2R_14043329_SNP [dm3] 2R_18155824_SNP [dm6]	C	T	5.124e^-4	0.979	INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12095329	2L_12095329_SNP [dm3] 2L_12095329_SNP [dm6]	C	T	5.129e^-4	0.979	SYNONYMOUS_CODING CG6712 DOWNSTREAM Pex19	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4320389	X_4320389_INS [dm3] X_4426356_INS [dm6]	G	GGCCTGTTCG	5.145e^-4	0.979	UPSTREAM bi INTRON CR32773 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3R	25803734	3R_25803734_SNP [dm3] 3R_29978012_SNP [dm6]	C	T	5.150e^-4	0.979	INTERGENIC
3R	23968114	3R_23968114_SNP [dm3] 3R_28142392_SNP [dm6]	T	C	5.154e^-4	0.979	INTERGENIC
2R	9344944	2R_9344944_SNP [dm3] 2R_13457439_SNP [dm6]	C	T	5.166e^-4	0.979	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24034929	3R_24034929_INS [dm3] 3R_28209207_INS [dm6]	C	ATATACAT	5.168e^-4	0.979	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6329024	2L_6329024_SNP [dm3] 2L_6329024_SNP [dm6]	T	C	5.168e^-4	0.979	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
3L	5898532	3L_5898532_SNP [dm3] 3L_5905432_SNP [dm6]	G	A	5.178e^-4	0.979	INTRON CG10486
2L	8088120	2L_8088120_SNP [dm3] 2L_8088120_SNP [dm6]	G	C	5.191e^-4	0.979	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	20786804	3L_20786804_SNP [dm3] 3L_20793704_SNP [dm6]	T	A	5.207e^-4	0.979	UPSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	17296651	2L_17296651_SNP [dm3] 2L_17296651_SNP [dm6]	T	C	5.208e^-4	0.979	INTERGENIC
2R	5793990	2R_5793990_SNP [dm3] 2R_9906485_SNP [dm6]	T	A	5.215e^-4	0.979	INTRON FMRFa
2L	11345257	2L_11345257_SNP [dm3] 2L_11345257_SNP [dm6]	A	G	5.215e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	9548688	2R_9548688_SNP [dm3] 2R_13661183_SNP [dm6]	C	T	5.220e^-4	0.979	DOWNSTREAM CG6209 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17297637	2L_17297637_SNP [dm3] 2L_17297637_SNP [dm6]	T	G	5.223e^-4	0.979	INTERGENIC
3R	22376312	3R_22376312_SNP [dm3] 3R_26550590_SNP [dm6]	T	C	5.223e^-4	0.979	INTRON scrib	TF binding site BDTNP1_TFBS_twi
2R	8536408	2R_8536408_SNP [dm3] 2R_12648903_SNP [dm6]	A	T	5.226e^-4	0.979	UPSTREAM CG8785 INTERGENIC
2R	10066676	2R_10066676_SNP [dm3] 2R_14179171_SNP [dm6]	G	T	5.230e^-4	0.979	SYNONYMOUS_CODING cg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26635065	3R_26635065_SNP [dm3] 3R_30809343_SNP [dm6]	C	A	5.237e^-4	0.979	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9762815	3R_9762815_SNP [dm3] 3R_13937093_SNP [dm6]	A	G	5.249e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	8651008	2L_8651008_DEL [dm3] 2L_8651008_DEL [dm6]	ATA	A	5.252e^-4	0.979	INTRON Sema-1a
3R	26898977	3R_26898977_SNP [dm3] 3R_31073255_SNP [dm6]	G	A	5.255e^-4	0.979	SYNONYMOUS_CODING Sox100B
2L	2245422	2L_2245422_SNP [dm3] 2L_2245422_SNP [dm6]	A	T	5.260e^-4	0.979	DOWNSTREAM CG4267 EXON CR42859
2L	2245423	2L_2245423_SNP [dm3] 2L_2245423_SNP [dm6]	T	G	5.260e^-4	0.979	DOWNSTREAM CG4267 EXON CR42859
3L	12600777	3L_12600777_SNP [dm3] 3L_12607677_SNP [dm6]	A	T	5.263e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15000324	2L_15000324_SNP [dm3] 2L_15000324_SNP [dm6]	A	T	5.274e^-4	0.979	INTERGENIC
3R	23933086	3R_23933086_SNP [dm3] 3R_28107364_SNP [dm6]	T	C	5.280e^-4	0.979	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4945884	2L_4945884_SNP [dm3] 2L_4945884_SNP [dm6]	A	C	5.286e^-4	0.979	UPSTREAM mRpL24 INTRON betaggt-I	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26635049	3R_26635049_SNP [dm3] 3R_30809327_SNP [dm6]	C	T	5.287e^-4	0.979	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1787187	2R_1787187_INS [dm3] 2R_5899682_INS [dm6]	C	CATTCGGC	5.303e^-4	0.979	INTRON CG43366
3R	11976907	3R_11976907_SNP [dm3] 3R_16151185_SNP [dm6]	T	C	5.304e^-4	0.979	SYNONYMOUS_CODING Fer2	TF binding site BDTNP1_TFBS_dl
3R	20291550	3R_20291550_SNP [dm3] 3R_24465828_SNP [dm6]	A	G	5.305e^-4	0.979	INTERGENIC
2R	9550874	2R_9550874_SNP [dm3] 2R_13663369_SNP [dm6]	T	C	5.338e^-4	0.979	NON_SYNONYMOUS_CODING CG6209 INTRON fas
3R	20359759	3R_20359759_SNP [dm3] 3R_24534037_SNP [dm6]	C	T	5.339e^-4	0.979	SYNONYMOUS_CODING ana1
3L	2287465	3L_2287465_SNP [dm3] 3L_2287465_SNP [dm6]	C	T	5.343e^-4	0.979	INTRON MsR2
2R	11862702	2R_11862702_SNP [dm3] 2R_15975197_SNP [dm6]	A	T	5.352e^-4	0.979	SYNONYMOUS_CODING Strn-Mlck
3R	26310349	3R_26310349_SNP [dm3] 3R_30484627_SNP [dm6]	A	G	5.361e^-4	0.979	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11229646	3L_11229646_INS [dm3] 3L_11236546_INS [dm6]	C	GTGTTACTA	5.365e^-4	0.979	UPSTREAM Ir68a & 1 other EXON CR44718	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6597584	2R_6597584_SNP [dm3] 2R_10710079_SNP [dm6]	G	A	5.374e^-4	0.979	SYNONYMOUS_CODING stan
3R	26328092	3R_26328092_SNP [dm3] 3R_30502370_SNP [dm6]	T	G	5.378e^-4	0.979	INTRON CG31371
3L	9623842	3L_9623842_MNP [dm3] 3L_9630742_MNP [dm6]	AAA	TTC	5.397e^-4	0.979	INTRON CG8336	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2181257	2L_2181257_SNP [dm3] 2L_2181257_SNP [dm6]	C	G	5.400e^-4	0.979	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1003128	3L_1003128_SNP [dm3] 3L_1003128_SNP [dm6]	T	C	5.403e^-4	0.979	INTRON trio
2R	17927406	2R_17927406_SNP [dm3] 2R_22039901_SNP [dm6]	A	T	5.404e^-4	0.979	UPSTREAM CG34370 INTERGENIC
3R	8381878	3R_8381878_SNP [dm3] 3R_12556156_SNP [dm6]	T	C	5.408e^-4	0.979	INTRON Octbeta2R
3L	13844823	3L_13844823_SNP [dm3] 3L_13851723_SNP [dm6]	C	A	5.409e^-4	0.979	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3R	18626322	3R_18626322_SNP [dm3] 3R_22800600_SNP [dm6]	C	T	5.413e^-4	0.979	INTERGENIC
3R	17714306	3R_17714306_SNP [dm3] 3R_21888584_SNP [dm6]	C	T	5.413e^-4	0.979	UPSTREAM CR43844 INTRON CG6678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6244033	2L_6244033_SNP [dm3] 2L_6244033_SNP [dm6]	C	A	5.421e^-4	0.979	INTERGENIC
X	7119712	X_7119712_SNP [dm3] X_7225679_SNP [dm6]	T	A	5.426e^-4	0.979	UPSTREAM CG9650 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23881823	3R_23881823_SNP [dm3] 3R_28056101_SNP [dm6]	C	T	5.428e^-4	0.979	INTRON CG34362
3L	9294076	3L_9294076_SNP [dm3] 3L_9300976_SNP [dm6]	T	G	5.432e^-4	0.979	INTERGENIC
3R	24015581	3R_24015581_SNP [dm3] 3R_28189859_SNP [dm6]	G	C	5.437e^-4	0.979	INTRON CG34354
3R	26635042	3R_26635042_SNP [dm3] 3R_30809320_SNP [dm6]	G	T	5.450e^-4	0.979	START_GAINED cindr UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18698465	3R_18698465_SNP [dm3] 3R_22872743_SNP [dm6]	A	G	5.452e^-4	0.979	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13226983	2R_13226983_SNP [dm3] 2R_17339478_SNP [dm6]	T	A	5.459e^-4	0.979	INTRON mbl
X	20453090	X_20453090_INS [dm3] X_20582063_INS [dm6]	G	GCGGTGGCTTGGTG...	5.464e^-4	0.979	INTERGENIC
2L	20613441	2L_20613441_DEL [dm3] 2L_20613441_DEL [dm6]	CC	C	5.464e^-4	0.979	INTRON CR44909
2L	721762	2L_721762_SNP [dm3] 2L_721762_SNP [dm6]	C	T	5.467e^-4	0.979	INTERGENIC
3R	27503876	3R_27503876_SNP [dm3] 3R_31678154_SNP [dm6]	C	T	5.468e^-4	0.979	UTR_3_PRIME CG11550 DOWNSTREAM CG1815
X	491744	X_491744_SNP [dm3] X_597711_SNP [dm6]	C	T	5.483e^-4	0.979	UTR_3_PRIME vnd INTRON CG13366
3R	26285332	3R_26285332_SNP [dm3] 3R_30459610_SNP [dm6]	A	T	5.503e^-4	0.979	UPSTREAM CDase & 1 other INTRON CDase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Ubx
2L	9104438	2L_9104438_SNP [dm3] 2L_9104438_SNP [dm6]	C	T	5.519e^-4	0.979	INTERGENIC
3L	16434975	3L_16434975_DEL [dm3] 3L_16441875_DEL [dm6]	CTGAAAG	C	5.520e^-4	0.979	INTRON CG33158 & 1 other
3L	15452197	3L_15452197_SNP [dm3] 3L_15459097_SNP [dm6]	A	T	5.521e^-4	0.979	DOWNSTREAM CR45394 INTERGENIC
X	12479862	X_12479862_SNP [dm3] X_12585829_SNP [dm6]	G	C	5.527e^-4	0.979	UTR_3_PRIME LIMK1
2L	6408726	2L_6408726_SNP [dm3] 2L_6408726_SNP [dm6]	G	A	5.527e^-4	0.979	INTRON CG42368	TF binding site mE1_TFBS_inv
3R	25457875	3R_25457875_SNP [dm3] 3R_29632153_SNP [dm6]	G	A	5.530e^-4	0.979	SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12395610	3L_12395610_SNP [dm3] 3L_12402510_SNP [dm6]	A	T	5.531e^-4	0.979	UTR_3_PRIME CG32103 UPSTREAM Smyd4 DOWNSTREAM CG32103
3R	26285178	3R_26285178_SNP [dm3] 3R_30459456_SNP [dm6]	T	A	5.536e^-4	0.979	UPSTREAM CDase & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7266758	3L_7266758_SNP [dm3] 3L_7273658_SNP [dm6]	G	A	5.546e^-4	0.979	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2L	11498354	2L_11498354_SNP [dm3] 2L_11498354_SNP [dm6]	A	G	5.549e^-4	0.979	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15777141	2R_15777141_SNP [dm3] 2R_19889636_SNP [dm6]	A	G	5.552e^-4	0.979	INTERGENIC
3R	26924854	3R_26924854_SNP [dm3] 3R_31099132_SNP [dm6]	G	A	5.554e^-4	0.979	SYNONYMOUS_CODING CG15553	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18539962	2R_18539962_SNP [dm3] 2R_22652457_SNP [dm6]	G	C	5.557e^-4	0.979	UTR_3_PRIME nsr DOWNSTREAM Cyp6d2 & 1 other
2R	13227108	2R_13227108_INS [dm3] 2R_17339603_INS [dm6]	A	AATGTGCCAGTTTAATATTG...	5.559e^-4	0.979	INTRON mbl
2L	11195124	2L_11195124_SNP [dm3] 2L_11195124_SNP [dm6]	G	T	5.565e^-4	0.979	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv

By genomic position
Variant impact
Gene name

cv_BoutNumber_Day phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results