DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.733e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2034 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19875768	X_19875768_SNP [dm3] X_19981735_SNP [dm6]	G	A	6.289e^-7	0.878	INTERGENIC
3L	19547453	3L_19547453_SNP [dm3] 3L_19554353_SNP [dm6]	G	A	3.810e^-6	0.878	SYNONYMOUS_CODING CG9300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14406149	3L_14406149_SNP [dm3] 3L_14413049_SNP [dm6]	A	C	3.903e^-6	0.878	UTR_3_PRIME bbg DOWNSTREAM CG3919
3L	15392388	3L_15392388_SNP [dm3] 3L_15399288_SNP [dm6]	T	A	3.931e^-6	0.878	INTERGENIC
3R	22245397	3R_22245397_SNP [dm3] 3R_26419675_SNP [dm6]	C	G	4.360e^-6	0.878	INTERGENIC
3R	5965629	3R_5965629_SNP [dm3] 3R_10139907_SNP [dm6]	A	T	6.783e^-6	0.878	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3R	2728991	3R_2728991_SNP [dm3] 3R_6903269_SNP [dm6]	C	T	7.219e^-6	0.878	DOWNSTREAM CR43252 INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8443057	2R_8443057_SNP [dm3] 2R_12555552_SNP [dm6]	T	A	7.448e^-6	0.878	INTRON fra
3L	12030314	3L_12030314_SNP [dm3] 3L_12037214_SNP [dm6]	A	C	7.513e^-6	0.878	INTRON rols
3R	2409760	3R_2409760_SNP [dm3] 3R_6584038_SNP [dm6]	C	T	7.865e^-6	0.878	INTRON dpr11
3R	25550803	3R_25550803_SNP [dm3] 3R_29725081_SNP [dm6]	T	C	8.953e^-6	0.878	UTR_5_PRIME CG18731 UPSTREAM Kul & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk mE1_TFBS_Ubx
X	14785356	X_14785356_SNP [dm3] X_14891323_SNP [dm6]	A	C	9.230e^-6	0.878	INTRON Flo2 & 1 other
3L	3093539	3L_3093539_SNP [dm3] 3L_3093539_SNP [dm6]	G	A	9.601e^-6	0.878	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9482020	3R_9482020_SNP [dm3] 3R_13656298_SNP [dm6]	C	A	1.097e^-5	0.878	NON_SYNONYMOUS_CODING Rbp4 DOWNSTREAM Hrb87F	TF binding site mE1_TFBS_cnc
2R	17977931	2R_17977931_DEL [dm3] 2R_22090426_DEL [dm6]	CGTATTTT	A	1.159e^-5	0.878	FRAME_SHIFT CG43393 SPLICE_SITE_DONOR CG43393 SPLICE_SITE_REGION CG43393 DOWNSTREAM CG44163 INTRON CG43393
3R	25549230	3R_25549230_SNP [dm3] 3R_29723508_SNP [dm6]	G	T	1.185e^-5	0.878	NON_SYNONYMOUS_CODING Pcd DOWNSTREAM CG34296 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12011627	2L_12011627_INS [dm3] 2L_12011627_INS [dm6]	C	CC	1.211e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	15789071	3L_15789071_SNP [dm3] 3L_15795971_SNP [dm6]	C	G	1.253e^-5	0.878	INTERGENIC
2R	20216899	2R_20216899_SNP [dm3] 2R_24329376_SNP [dm6]	G	A	1.499e^-5	0.878	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
2R	15270916	2R_15270916_SNP [dm3] 2R_19383411_SNP [dm6]	C	T	1.596e^-5	0.878	SYNONYMOUS_CODING CG10073
3L	3093554	3L_3093554_SNP [dm3] 3L_3093554_SNP [dm6]	G	A	1.600e^-5	0.878	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4177714	2L_4177714_SNP [dm3] 2L_4177714_SNP [dm6]	G	C	1.647e^-5	0.878	INTERGENIC
X	4273729	X_4273729_SNP [dm3] X_4379696_SNP [dm6]	C	T	1.727e^-5	0.878	INTERGENIC
3R	9759805	3R_9759805_SNP [dm3] 3R_13934083_SNP [dm6]	C	T	1.773e^-5	0.878	INTERGENIC
2R	15039087	2R_15039087_SNP [dm3] 2R_19151582_SNP [dm6]	G	A	1.782e^-5	0.878	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16532234	3R_16532234_SNP [dm3] 3R_20706512_SNP [dm6]	A	G	2.070e^-5	0.878	INTRON Oamb
2R	17978020	2R_17978020_SNP [dm3] 2R_22090515_SNP [dm6]	G	T	2.074e^-5	0.878	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163 & 1 other
X	4193791	X_4193791_SNP [dm3] X_4299758_SNP [dm6]	G	C	2.135e^-5	0.878	DOWNSTREAM CG12692 INTERGENIC
X	2408179	X_2408179_DEL [dm3] X_2514146_DEL [dm6]	AATGCGAGCC	A	2.326e^-5	0.878	INTRON trol
3R	14647306	3R_14647306_SNP [dm3] 3R_18821584_SNP [dm6]	A	T	2.493e^-5	0.878	INTRON CG18208
2R	14963336	2R_14963336_SNP [dm3] 2R_19075831_SNP [dm6]	C	A	2.550e^-5	0.878	INTRON 5-HT1A
2R	19510817	2R_19510817_SNP [dm3] 2R_23623294_SNP [dm6]	T	A	2.556e^-5	0.878	INTERGENIC
2R	19510826	2R_19510826_DEL [dm3] 2R_23623303_DEL [dm6]	TT	T	2.576e^-5	0.878	INTERGENIC
3R	15003401	3R_15003401_SNP [dm3] 3R_19177679_SNP [dm6]	G	A	2.637e^-5	0.878	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17168689	3L_17168689_SNP [dm3] 3L_17175589_SNP [dm6]	G	C	2.664e^-5	0.878	INTRON Rbp6
3L	11021696	3L_11021696_SNP [dm3] 3L_11028596_SNP [dm6]	A	G	2.704e^-5	0.878	NON_SYNONYMOUS_CODING CG32081	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	2.832e^-5	0.878	INTRON Oamb
2R	19510818	2R_19510818_SNP [dm3] 2R_23623295_SNP [dm6]	T	C	2.940e^-5	0.878	INTERGENIC
3R	8596188	3R_8596188_SNP [dm3] 3R_12770466_SNP [dm6]	C	A	3.093e^-5	0.878	INTRON beat-Vc
3L	8408129	3L_8408129_SNP [dm3] 3L_8415029_SNP [dm6]	G	A	3.138e^-5	0.878	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm & 1 other
2R	15039256	2R_15039256_SNP [dm3] 2R_19151751_SNP [dm6]	T	G	3.166e^-5	0.878	INTRON ena
3R	25556368	3R_25556368_SNP [dm3] 3R_29730646_SNP [dm6]	T	A	3.232e^-5	0.878	SYNONYMOUS_CODING Kul INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2537745	3R_2537745_SNP [dm3] 3R_6712023_SNP [dm6]	C	T	3.427e^-5	0.878	INTRON pb	regulatory region REDfly_CRMs
3R	2682800	3R_2682800_SNP [dm3] 3R_6857078_SNP [dm6]	C	T	3.521e^-5	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2472712	2R_2472712_SNP [dm3] 2R_6585207_SNP [dm6]	T	A	3.623e^-5	0.878	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	11269828	X_11269828_SNP [dm3] X_11375795_SNP [dm6]	G	A	3.703e^-5	0.878	UTR_5_PRIME dlg1 INTRON dlg1
3L	14173790	3L_14173790_SNP [dm3] 3L_14180690_SNP [dm6]	A	C	3.708e^-5	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	17977966	2R_17977966_SNP [dm3] 2R_22090461_SNP [dm6]	C	T	3.883e^-5	0.878	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163
3L	22784338	3L_22784338_SNP [dm3] 3L_22791238_SNP [dm6]	C	G	3.914e^-5	0.878	UTR_3_PRIME jim
X	16761643	X_16761643_SNP [dm3] X_16867610_SNP [dm6]	G	A	3.943e^-5	0.878	INTRON CG13003
2L	6973644	2L_6973644_SNP [dm3] 2L_6973644_SNP [dm6]	A	G	3.980e^-5	0.878	SYNONYMOUS_CODING uif DOWNSTREAM CR43142
2R	14314684	2R_14314684_SNP [dm3] 2R_18427179_SNP [dm6]	G	T	4.046e^-5	0.878	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG5174	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7854478	3L_7854478_SNP [dm3] 3L_7861378_SNP [dm6]	T	C	4.064e^-5	0.878	INTRON Pdp1
3R	2729179	3R_2729179_SNP [dm3] 3R_6903457_SNP [dm6]	G	T	4.108e^-5	0.878	INTRON Antp EXON CR43252	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	25550295	3R_25550295_SNP [dm3] 3R_29724573_SNP [dm6]	G	T	4.112e^-5	0.878	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	19138652	2R_19138652_SNP [dm3] 2R_23251129_SNP [dm6]	T	A	4.115e^-5	0.878	INTERGENIC
2L	3601748	2L_3601748_SNP [dm3] 2L_3601748_SNP [dm6]	C	T	4.415e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
X	2603461	X_2603461_SNP [dm3] X_2709428_SNP [dm6]	T	C	4.430e^-5	0.878	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
3R	2732209	3R_2732209_SNP [dm3] 3R_6906487_SNP [dm6]	G	T	4.531e^-5	0.878	DOWNSTREAM Antp INTRON Antp	TF binding site BDTNP1_TFBS_prd
2L	17914307	2L_17914307_SNP [dm3] 2L_17914307_SNP [dm6]	A	C	4.560e^-5	0.878	DOWNSTREAM CG43271 INTERGENIC
3R	2679714	3R_2679714_SNP [dm3] 3R_6853992_SNP [dm6]	C	A	4.587e^-5	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	2700371	3R_2700371_SNP [dm3] 3R_6874649_SNP [dm6]	G	A	4.623e^-5	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26090266	3R_26090266_SNP [dm3] 3R_30264544_SNP [dm6]	G	A	4.730e^-5	0.878	INTERGENIC
3L	15789159	3L_15789159_SNP [dm3] 3L_15796059_SNP [dm6]	A	G	4.774e^-5	0.878	INTERGENIC
3L	8822967	3L_8822967_SNP [dm3] 3L_8829867_SNP [dm6]	A	G	4.784e^-5	0.878	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	25550415	3R_25550415_SNP [dm3] 3R_29724693_SNP [dm6]	T	C	4.794e^-5	0.878	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	19307981	2R_19307981_SNP [dm3] 2R_23420458_SNP [dm6]	C	T	4.836e^-5	0.878	UPSTREAM CG9812 INTERGENIC
3R	3051464	3R_3051464_SNP [dm3] 3R_7225742_SNP [dm6]	G	A	4.860e^-5	0.878	INTRON CG14608
3R	2692506	3R_2692506_SNP [dm3] 3R_6866784_SNP [dm6]	A	G	4.873e^-5	0.878	DOWNSTREAM ftz INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16522330	3R_16522330_SNP [dm3] 3R_20696608_SNP [dm6]	G	T	4.979e^-5	0.878	INTRON Oamb
3L	12210733	3L_12210733_SNP [dm3] 3L_12217633_SNP [dm6]	G	A	5.107e^-5	0.878	INTRON app
3L	14404144	3L_14404144_SNP [dm3] 3L_14411044_SNP [dm6]	T	C	5.146e^-5	0.878	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15694584	2R_15694584_SNP [dm3] 2R_19807079_SNP [dm6]	T	C	5.229e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7997124	3L_7997124_SNP [dm3] 3L_8004024_SNP [dm6]	G	A	5.237e^-5	0.878	INTRON nmo
3L	14406579	3L_14406579_SNP [dm3] 3L_14413479_SNP [dm6]	G	A	5.242e^-5	0.878	SYNONYMOUS_CODING bbg DOWNSTREAM CG3919
3L	16649465	3L_16649465_SNP [dm3] 3L_16656365_SNP [dm6]	G	T	5.268e^-5	0.878	INTRON Baldspot
3R	25549424	3R_25549424_SNP [dm3] 3R_29723702_SNP [dm6]	G	T	5.276e^-5	0.878	DOWNSTREAM CG34296 & 1 other INTRON Pcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	2739145	3R_2739145_SNP [dm3] 3R_6913423_SNP [dm6]	T	G	5.356e^-5	0.878	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7208504	X_7208504_INS [dm3] X_7314471_INS [dm6]	T	TATTTTT	5.401e^-5	0.878	DOWNSTREAM Atg5 INTRON CR44357 & 1 other
2R	17977943	2R_17977943_DEL [dm3] 2R_22090438_DEL [dm6]	CAAGAGTCA	C	5.458e^-5	0.878	FRAME_SHIFT CG43393 DOWNSTREAM CG44163
3R	20943195	3R_20943195_DEL [dm3] 3R_25117473_DEL [dm6]	TTGT	T	5.494e^-5	0.878	UTR_3_PRIME CG31510 INTRON CG31108
X	19874256	X_19874256_SNP [dm3] X_19980223_SNP [dm6]	A	G	5.514e^-5	0.878	INTERGENIC
X	9752281	X_9752281_SNP [dm3] X_9858248_SNP [dm6]	C	T	5.573e^-5	0.878	INTERGENIC
3L	3093542	3L_3093542_SNP [dm3] 3L_3093542_SNP [dm6]	G	A	5.595e^-5	0.878	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10523746	2R_10523746_SNP [dm3] 2R_14636241_SNP [dm6]	G	A	5.622e^-5	0.878	INTERGENIC
2L	18633665	2L_18633665_SNP [dm3] 2L_18633665_SNP [dm6]	T	A	5.692e^-5	0.878	INTRON MESR3
X	282471	X_282471_SNP [dm3] X_388438_SNP [dm6]	A	G	5.894e^-5	0.878	INTRON CG32816
3L	16163035	3L_16163035_SNP [dm3] 3L_16169935_SNP [dm6]	G	T	5.927e^-5	0.878	SYNONYMOUS_CODING CG33796 DOWNSTREAM CG33795
2L	5910346	2L_5910346_SNP [dm3] 2L_5910346_SNP [dm6]	C	A	5.936e^-5	0.878	UPSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da
3R	20031137	3R_20031137_SNP [dm3] 3R_24205415_SNP [dm6]	C	G	6.038e^-5	0.878	INTRON twin
X	12035719	X_12035719_SNP [dm3] X_12141686_SNP [dm6]	T	C	6.231e^-5	0.878	INTRON Ten-a
2R	17977725	2R_17977725_SNP [dm3] 2R_22090220_SNP [dm6]	T	A	6.281e^-5	0.878	DOWNSTREAM CG44163 INTRON CG43393
X	17229978	X_17229978_SNP [dm3] X_17335945_SNP [dm6]	A	G	6.327e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11352556	X_11352556_SNP [dm3] X_11458523_SNP [dm6]	A	G	6.330e^-5	0.878	UTR_3_PRIME HP5
X	18640136	X_18640136_SNP [dm3] X_18746103_SNP [dm6]	A	G	6.407e^-5	0.878	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16522090	3R_16522090_INS [dm3] 3R_20696368_INS [dm6]	G	GAGAGAAAAG	6.490e^-5	0.878	INTRON Oamb
2L	18746803	2L_18746803_SNP [dm3] 2L_18746803_SNP [dm6]	T	C	6.555e^-5	0.878	INTERGENIC
2L	3631500	2L_3631500_INS [dm3] 2L_3631500_INS [dm6]	A	AATAACA	6.595e^-5	0.878	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	15694413	2R_15694413_SNP [dm3] 2R_19806908_SNP [dm6]	T	C	6.606e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
3R	2695960	3R_2695960_SNP [dm3] 3R_6870238_SNP [dm6]	C	A	6.637e^-5	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	13291606	2L_13291606_SNP [dm3] 2L_13291606_SNP [dm6]	C	A	6.695e^-5	0.878	INTRON CG31729	TF binding site mE1_TFBS_HSA
3R	25550463	3R_25550463_SNP [dm3] 3R_29724741_SNP [dm6]	G	A	6.705e^-5	0.878	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	16535974	3R_16535974_SNP [dm3] 3R_20710252_SNP [dm6]	A	T	6.732e^-5	0.878	INTRON Oamb
3R	3297953	3R_3297953_SNP [dm3] 3R_7472231_SNP [dm6]	T	C	6.740e^-5	0.878	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19534429	3L_19534429_SNP [dm3] 3L_19541329_SNP [dm6]	T	G	6.854e^-5	0.878	SYNONYMOUS_CODING CG9279	TF binding site mE1_TFBS_cad
3R	3298118	3R_3298118_SNP [dm3] 3R_7472396_SNP [dm6]	C	T	6.923e^-5	0.878	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4019834	3R_4019834_SNP [dm3] 3R_8194112_SNP [dm6]	C	T	6.978e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	17914386	2L_17914386_SNP [dm3] 2L_17914386_SNP [dm6]	A	T	7.012e^-5	0.878	UTR_3_PRIME CG43271 DOWNSTREAM CG43271
2L	6025370	2L_6025370_SNP [dm3] 2L_6025370_SNP [dm6]	C	T	7.051e^-5	0.878	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5193128	3R_5193128_SNP [dm3] 3R_9367406_SNP [dm6]	A	G	7.096e^-5	0.878	SYNONYMOUS_CODING CG8129 DOWNSTREAM FER
3R	20029759	3R_20029759_DEL [dm3] 3R_24204037_DEL [dm6]	AGAA	A	7.190e^-5	0.878	INTRON twin	TF binding site mE1_TFBS_cnc
3L	15789095	3L_15789095_SNP [dm3] 3L_15795995_SNP [dm6]	T	A	7.342e^-5	0.878	INTERGENIC
3R	15003084	3R_15003084_SNP [dm3] 3R_19177362_SNP [dm6]	A	G	7.398e^-5	0.878	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14438699	3R_14438699_SNP [dm3] 3R_18612977_SNP [dm6]	A	T	7.539e^-5	0.878	INTRON qin & 1 other
3L	18242656	3L_18242656_SNP [dm3] 3L_18249556_SNP [dm6]	T	G	7.590e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22717118	3L_22717118_DEL [dm3] 3L_22724018_DEL [dm6]	TATT	T	7.601e^-5	0.878	UPSTREAM mael INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	17926456	2L_17926456_SNP [dm3] 2L_17926456_SNP [dm6]	C	A	7.647e^-5	0.878	INTERGENIC
3R	12313071	3R_12313071_SNP [dm3] 3R_16487349_SNP [dm6]	C	A	7.688e^-5	0.878	INTRON Cad89D
3R	6395686	3R_6395686_SNP [dm3] 3R_10569964_SNP [dm6]	A	C	7.724e^-5	0.878	INTRON hth	TF binding site mE1_TFBS_cad
X	243213	X_243213_SNP [dm3] X_349180_SNP [dm6]	A	C	7.775e^-5	0.878	SYNONYMOUS_CODING CG3777 INTRON CG32816	TF binding site mE1_TFBS_chinmo
3L	11928726	3L_11928726_SNP [dm3] 3L_11935626_SNP [dm6]	T	A	7.804e^-5	0.878	SYNONYMOUS_CODING byn UTR_3_PRIME byn INTRON CG44837	TF binding site mE1_TFBS_chinmo
3R	2696638	3R_2696638_SNP [dm3] 3R_6870916_SNP [dm6]	A	G	7.813e^-5	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16162993	3L_16162993_SNP [dm3] 3L_16169893_SNP [dm6]	G	A	7.847e^-5	0.878	SYNONYMOUS_CODING CG33796 DOWNSTREAM CG33795
3R	5712526	3R_5712526_INS [dm3] 3R_9886804_INS [dm6]	C	CC	7.904e^-5	0.878	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3003034	X_3003034_SNP [dm3] X_3109001_SNP [dm6]	A	T	7.909e^-5	0.878	INTRON kirre
2L	1241656	2L_1241656_SNP [dm3] 2L_1241656_SNP [dm6]	A	G	7.916e^-5	0.878	SYNONYMOUS_CODING CG5397
2R	9559742	2R_9559742_DEL [dm3] 2R_13672237_DEL [dm6]	TGC	T	7.971e^-5	0.878	UPSTREAM CR45031 DOWNSTREAM CG18368 INTRON fas
3R	25552523	3R_25552523_SNP [dm3] 3R_29726801_SNP [dm6]	C	A	8.052e^-5	0.878	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6976977	2L_6976977_SNP [dm3] 2L_6976977_SNP [dm6]	C	T	8.063e^-5	0.878	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	25550457	3R_25550457_SNP [dm3] 3R_29724735_SNP [dm6]	G	A	8.218e^-5	0.878	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	6167232	2R_6167232_SNP [dm3] 2R_10279727_SNP [dm6]	G	C	8.275e^-5	0.878	NON_SYNONYMOUS_CODING CAP INTRON CAP
X	8882411	X_8882411_SNP [dm3] X_8988378_SNP [dm6]	A	G	8.304e^-5	0.878	INTRON rdgA & 1 other
X	15317659	X_15317659_DEL [dm3] X_15423626_DEL [dm6]	TAAGCCTC	T	8.311e^-5	0.878	INTRON Cngl
2L	1239576	2L_1239576_SNP [dm3] 2L_1239576_SNP [dm6]	A	T	8.399e^-5	0.878	UPSTREAM CG5397 INTERGENIC
2R	6111667	2R_6111667_SNP [dm3] 2R_10224162_SNP [dm6]	T	G	8.442e^-5	0.878	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	8.600e^-5	0.878	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18854154	2L_18854154_SNP [dm3] 2L_18854154_SNP [dm6]	G	A	8.610e^-5	0.878	NON_SYNONYMOUS_CODING CG17321 DOWNSTREAM CG10602	TF binding site mE1_TFBS_cad
3L	19695682	3L_19695682_SNP [dm3] 3L_19702582_SNP [dm6]	A	T	8.613e^-5	0.878	INTRON serp	TF binding site mE1_TFBS_cad
X	5876043	X_5876043_SNP [dm3] X_5982010_SNP [dm6]	C	A	8.626e^-5	0.878	INTRON Grip	TF binding site BDTNP1_TFBS_twi
3L	14404575	3L_14404575_SNP [dm3] 3L_14411475_SNP [dm6]	T	A	8.760e^-5	0.878	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16537438	3R_16537438_SNP [dm3] 3R_20711716_SNP [dm6]	C	T	8.772e^-5	0.878	INTRON Oamb
3R	16537451	3R_16537451_SNP [dm3] 3R_20711729_SNP [dm6]	A	T	8.772e^-5	0.878	INTRON Oamb
2L	18113256	2L_18113256_SNP [dm3] 2L_18113256_SNP [dm6]	T	C	8.813e^-5	0.878	UPSTREAM CG44476 INTERGENIC
3L	4018943	3L_4018943_SNP [dm3] 3L_4018943_SNP [dm6]	A	T	8.818e^-5	0.878	UTR_5_PRIME fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17095446	3R_17095446_SNP [dm3] 3R_21269724_SNP [dm6]	A	G	8.825e^-5	0.878	UPSTREAM Rab1 & 1 other INTRON AP-2sigma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16308040	3R_16308040_SNP [dm3] 3R_20482318_SNP [dm6]	T	G	8.868e^-5	0.878	INTRON Gfrl
X	13816953	X_13816953_SNP [dm3] X_13922920_SNP [dm6]	G	A	8.941e^-5	0.878	INTRON mamo
3R	5214819	3R_5214819_SNP [dm3] 3R_9389097_SNP [dm6]	C	T	9.123e^-5	0.878	INTRON FER
3L	14530417	3L_14530417_SNP [dm3] 3L_14537317_SNP [dm6]	C	T	9.164e^-5	0.878	UPSTREAM Mpcp DOWNSTREAM CG43246 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2745476	3R_2745476_SNP [dm3] 3R_6919754_SNP [dm6]	A	C	9.165e^-5	0.878	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7124360	2L_7124360_SNP [dm3] 2L_7124360_SNP [dm6]	A	C	9.201e^-5	0.878	INTRON Pvf3
3L	5435690	3L_5435690_SNP [dm3] 3L_5442590_SNP [dm6]	A	G	9.232e^-5	0.878	DOWNSTREAM CG34391 INTERGENIC
3R	25552536	3R_25552536_SNP [dm3] 3R_29726814_SNP [dm6]	G	A	9.237e^-5	0.878	SPLICE_SITE_ACCEPTOR Kul INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15794724	3L_15794724_DEL [dm3] 3L_15801624_DEL [dm6]	AT	A	9.531e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	2284370	3L_2284370_SNP [dm3] 3L_2284370_SNP [dm6]	A	G	9.536e^-5	0.878	INTRON MsR2
2R	17977942	2R_17977942_SNP [dm3] 2R_22090437_SNP [dm6]	C	A	9.546e^-5	0.878	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163
2L	4256728	2L_4256728_SNP [dm3] 2L_4256728_SNP [dm6]	G	A	9.549e^-5	0.878	UPSTREAM CR45294 & 2 others DOWNSTREAM CR45296 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3R	21671666	3R_21671666_SNP [dm3] 3R_25845944_SNP [dm6]	C	T	9.630e^-5	0.878	UPSTREAM CR45655 EXON CR45654
3R	22220967	3R_22220967_SNP [dm3] 3R_26395245_SNP [dm6]	A	C	9.710e^-5	0.878	INTERGENIC
X	2595147	X_2595147_SNP [dm3] X_2701114_SNP [dm6]	T	A	9.785e^-5	0.878	DOWNSTREAM Csat & 1 other INTERGENIC
3R	24569985	3R_24569985_SNP [dm3] 3R_28744263_SNP [dm6]	G	A	9.851e^-5	0.878	UTR_5_PRIME AstA-R2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14647451	3R_14647451_SNP [dm3] 3R_18821729_SNP [dm6]	T	C	9.883e^-5	0.878	INTRON CG18208
2R	12433594	2R_12433594_SNP [dm3] 2R_16546089_SNP [dm6]	G	T	9.948e^-5	0.878	INTERGENIC
2R	6848572	2R_6848572_SNP [dm3] 2R_10961067_SNP [dm6]	T	C	9.977e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19032946	2R_19032946_SNP [dm3] 2R_23145423_SNP [dm6]	G	T	1.000e^-4	0.878	DOWNSTREAM Klp59D INTERGENIC
3R	16308012	3R_16308012_SNP [dm3] 3R_20482290_SNP [dm6]	G	A	1.002e^-4	0.878	INTRON Gfrl
3R	2408911	3R_2408911_SNP [dm3] 3R_6583189_SNP [dm6]	C	G	1.004e^-4	0.878	DOWNSTREAM CG2336 INTRON dpr11
2L	6892007	2L_6892007_SNP [dm3] 2L_6892007_SNP [dm6]	G	A	1.015e^-4	0.878	INTRON Nlg2
2L	7208108	2L_7208108_SNP [dm3] 2L_7208108_SNP [dm6]	C	G	1.029e^-4	0.878	INTRON CG13784
3R	14746023	3R_14746023_SNP [dm3] 3R_18920301_SNP [dm6]	G	A	1.035e^-4	0.878	UTR_5_PRIME Xrp1 INTRON Xrp1
X	5453026	X_5453026_SNP [dm3] X_5558993_SNP [dm6]	A	C	1.040e^-4	0.878	INTRON Vsx2
3L	18829398	3L_18829398_SNP [dm3] 3L_18836298_SNP [dm6]	G	T	1.041e^-4	0.878	INTRON Indy
3L	4191922	3L_4191922_SNP [dm3] 3L_4191922_SNP [dm6]	G	T	1.045e^-4	0.878	INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad
3R	2423449	3R_2423449_SNP [dm3] 3R_6597727_SNP [dm6]	T	C	1.046e^-4	0.878	SYNONYMOUS_CODING CG1138
3L	15794720	3L_15794720_SNP [dm3] 3L_15801620_SNP [dm6]	A	G	1.048e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7876516	3L_7876516_SNP [dm3] 3L_7883416_SNP [dm6]	T	A	1.051e^-4	0.878	INTRON CG32365
2L	7327389	2L_7327389_SNP [dm3] 2L_7327389_SNP [dm6]	T	C	1.053e^-4	0.878	INTERGENIC
3R	22616429	3R_22616429_SNP [dm3] 3R_26790707_SNP [dm6]	A	G	1.054e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	13755245	3R_13755245_SNP [dm3] 3R_17929523_SNP [dm6]	T	C	1.066e^-4	0.878	INTRON cpo
3L	17982874	3L_17982874_SNP [dm3] 3L_17989774_SNP [dm6]	A	G	1.067e^-4	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15802498	3L_15802498_DEL [dm3] 3L_15809398_DEL [dm6]	AGA	A	1.075e^-4	0.878	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
3R	9998469	3R_9998469_SNP [dm3] 3R_14172747_SNP [dm6]	G	A	1.077e^-4	0.878	UTR_3_PRIME Dop1R1
3L	2774875	3L_2774875_SNP [dm3] 3L_2774875_SNP [dm6]	C	T	1.086e^-4	0.878	SYNONYMOUS_CODING Atg2 UPSTREAM CG12093	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	654789	2L_654789_SNP [dm3] 2L_654789_SNP [dm6]	G	T	1.091e^-4	0.878	INTRON ds
3R	16004116	3R_16004116_INS [dm3] 3R_20178394_INS [dm6]	C	CTGGATCCTC	1.093e^-4	0.878	INTERGENIC
2L	4219083	2L_4219083_SNP [dm3] 2L_4219083_SNP [dm6]	A	T	1.094e^-4	0.878	INTRON ft	TF binding site mE1_TFBS_HSA
3L	15789105	3L_15789105_INS [dm3] 3L_15796005_INS [dm6]	T	TCTGT	1.100e^-4	0.878	INTERGENIC
3R	16308023	3R_16308023_SNP [dm3] 3R_20482301_SNP [dm6]	T	C	1.102e^-4	0.878	INTRON Gfrl
2R	19964161	2R_19964161_INS [dm3] 2R_24076638_INS [dm6]	A	ACAATA	1.113e^-4	0.878	DOWNSTREAM Mlp60A INTRON Mlp60A	TF binding site mE1_TFBS_cad
2L	5555630	2L_5555630_SNP [dm3] 2L_5555630_SNP [dm6]	C	T	1.118e^-4	0.878	DOWNSTREAM CG14017 INTRON GluRIIA
3R	18992272	3R_18992272_SNP [dm3] 3R_23166550_SNP [dm6]	G	A	1.121e^-4	0.878	INTERGENIC
2L	18648545	2L_18648545_SNP [dm3] 2L_18648545_SNP [dm6]	C	T	1.123e^-4	0.878	INTRON MESR3
2R	10803991	2R_10803991_SNP [dm3] 2R_14916486_SNP [dm6]	T	C	1.124e^-4	0.878	INTRON CG10249
X	17766022	X_17766022_DEL [dm3] X_17871989_DEL [dm6]	TAT	T	1.125e^-4	0.878	INTRON mnb	TF binding site mE1_TFBS_Trl
3R	17952751	3R_17952751_SNP [dm3] 3R_22127029_SNP [dm6]	T	A	1.131e^-4	0.878	INTRON CG42390
2R	10804048	2R_10804048_SNP [dm3] 2R_14916543_SNP [dm6]	T	C	1.137e^-4	0.878	INTRON CG10249
3L	14417948	3L_14417948_INS [dm3] 3L_14424848_INS [dm6]	A	ATCATC	1.138e^-4	0.878	INTRON bbg
X	6542862	X_6542862_SNP [dm3] X_6648829_SNP [dm6]	C	T	1.159e^-4	0.878	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
3R	2737960	3R_2737960_SNP [dm3] 3R_6912238_SNP [dm6]	G	T	1.163e^-4	0.878	INTRON Antp	insulator Insulator_Class_II.mE01 Insulator_Class_I.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17957283	2R_17957283_SNP [dm3] 2R_22069778_SNP [dm6]	T	C	1.166e^-4	0.878	UTR_3_PRIME CG11475 DOWNSTREAM Snp
X	18399900	X_18399900_SNP [dm3] X_18505867_SNP [dm6]	A	T	1.168e^-4	0.878	UPSTREAM Wnt5 DOWNSTREAM Ggt-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb mE1_TFBS_sens
X	9116599	X_9116599_SNP [dm3] X_9222566_SNP [dm6]	C	T	1.169e^-4	0.878	INTRON t
3L	10690245	3L_10690245_SNP [dm3] 3L_10697145_SNP [dm6]	A	T	1.170e^-4	0.878	UPSTREAM NijA INTERGENIC
2R	6972097	2R_6972097_SNP [dm3] 2R_11084592_SNP [dm6]	G	T	1.171e^-4	0.878	UPSTREAM CG43188 INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	20460249	3R_20460249_SNP [dm3] 3R_24634527_SNP [dm6]	A	C	1.178e^-4	0.878	UTR_3_PRIME atl DOWNSTREAM CG43222 & 1 other
X	282696	X_282696_SNP [dm3] X_388663_SNP [dm6]	A	T	1.180e^-4	0.878	INTRON CG32816
2R	17958957	2R_17958957_SNP [dm3] 2R_22071452_SNP [dm6]	G	C	1.189e^-4	0.878	UTR_3_PRIME CG11474 UPSTREAM CG11475
2L	5548801	2L_5548801_SNP [dm3] 2L_5548801_SNP [dm6]	T	C	1.190e^-4	0.878	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 INTRON Oscillin
3R	14530101	3R_14530101_SNP [dm3] 3R_18704379_SNP [dm6]	T	C	1.192e^-4	0.878	INTERGENIC
3R	13115952	3R_13115952_SNP [dm3] 3R_17290230_SNP [dm6]	A	C	1.192e^-4	0.878	INTERGENIC
3R	18992263	3R_18992263_SNP [dm3] 3R_23166541_SNP [dm6]	C	T	1.194e^-4	0.878	INTERGENIC
2L	10306436	2L_10306436_DEL [dm3] 2L_10306436_DEL [dm6]	AA	A	1.198e^-4	0.878	UPSTREAM CG4968 INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_zfh1
3R	15006339	3R_15006339_SNP [dm3] 3R_19180617_SNP [dm6]	C	T	1.198e^-4	0.878	UPSTREAM CG31475 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3R	4994364	3R_4994364_INS [dm3] 3R_9168642_INS [dm6]	A	ATGA	1.208e^-4	0.878	INTRON pum
3R	15003578	3R_15003578_SNP [dm3] 3R_19177856_SNP [dm6]	G	A	1.210e^-4	0.878	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad
3R	3297938	3R_3297938_SNP [dm3] 3R_7472216_SNP [dm6]	T	A	1.210e^-4	0.878	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
3R	16536120	3R_16536120_SNP [dm3] 3R_20710398_SNP [dm6]	A	T	1.212e^-4	0.878	INTRON Oamb
2R	11516858	2R_11516858_SNP [dm3] 2R_15629353_SNP [dm6]	T	C	1.216e^-4	0.878	INTRON CG42524
3L	8929204	3L_8929204_SNP [dm3] 3L_8936104_SNP [dm6]	C	T	1.218e^-4	0.878	SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18790819	2L_18790819_SNP [dm3] 2L_18790819_SNP [dm6]	C	T	1.219e^-4	0.878	INTRON ham	TF binding site mE1_TFBS_cad
2R	3567743	2R_3567743_SNP [dm3] 2R_7680238_SNP [dm6]	C	G	1.226e^-4	0.878	INTRON CG1399
3R	7161129	3R_7161129_DEL [dm3] 3R_11335407_DEL [dm6]	AACAAAAA	A	1.226e^-4	0.878	UTR_5_PRIME pros INTRON pros	TF binding site BDTNP1_TFBS_dl
X	8080152	X_8080152_SNP [dm3] X_8186119_SNP [dm6]	A	C	1.234e^-4	0.878	INTRON sdt
2R	18854337	2R_18854337_SNP [dm3] 2R_22966814_SNP [dm6]	G	T	1.248e^-4	0.878	INTERGENIC
X	21194292	X_21194292_INS [dm3] X_21323265_INS [dm6]	T	TT	1.255e^-4	0.878	UTR_5_PRIME Dd UPSTREAM CG1486	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
X	18640069	X_18640069_SNP [dm3] X_18746036_SNP [dm6]	C	G	1.266e^-4	0.878	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
2R	12540344	2R_12540344_SNP [dm3] 2R_16652839_SNP [dm6]	T	G	1.279e^-4	0.878	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3L	9547140	3L_9547140_SNP [dm3] 3L_9554040_SNP [dm6]	C	G	1.283e^-4	0.878	INTRON CG42673
2L	5450545	2L_5450545_SNP [dm3] 2L_5450545_SNP [dm6]	T	C	1.291e^-4	0.878	INTERGENIC
3R	3297914	3R_3297914_SNP [dm3] 3R_7472192_SNP [dm6]	A	T	1.295e^-4	0.878	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
X	17974846	X_17974846_SNP [dm3] X_18080813_SNP [dm6]	T	G	1.297e^-4	0.878	SYNONYMOUS_CODING CG7536	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12781766	X_12781766_SNP [dm3] X_12887733_SNP [dm6]	A	C	1.317e^-4	0.878	INTRON Pde9
3R	6244931	3R_6244931_SNP [dm3] 3R_10419209_SNP [dm6]	C	A	1.327e^-4	0.878	INTERGENIC
2L	17914359	2L_17914359_SNP [dm3] 2L_17914359_SNP [dm6]	T	G	1.335e^-4	0.878	DOWNSTREAM CG43271 INTERGENIC
3R	14530086	3R_14530086_SNP [dm3] 3R_18704364_SNP [dm6]	G	C	1.341e^-4	0.878	INTERGENIC
3R	14530087	3R_14530087_SNP [dm3] 3R_18704365_SNP [dm6]	T	A	1.341e^-4	0.878	INTERGENIC
2L	6787681	2L_6787681_SNP [dm3] 2L_6787681_SNP [dm6]	G	A	1.342e^-4	0.878	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8729601	3L_8729601_SNP [dm3] 3L_8736501_SNP [dm6]	T	C	1.350e^-4	0.878	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3L	7039257	3L_7039257_SNP [dm3] 3L_7046157_SNP [dm6]	A	T	1.351e^-4	0.878	INTRON Mp
3R	25550391	3R_25550391_SNP [dm3] 3R_29724669_SNP [dm6]	C	T	1.352e^-4	0.878	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	10603509	3R_10603509_SNP [dm3] 3R_14777787_SNP [dm6]	A	C	1.356e^-4	0.878	INTRON jvl
3R	2685287	3R_2685287_SNP [dm3] 3R_6859565_SNP [dm6]	C	T	1.361e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	3609959	X_3609959_SNP [dm3] X_3715926_SNP [dm6]	G	A	1.365e^-4	0.878	INTRON Rala
3R	14750116	3R_14750116_SNP [dm3] 3R_18924394_SNP [dm6]	T	A	1.383e^-4	0.878	INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15039177	2R_15039177_SNP [dm3] 2R_19151672_SNP [dm6]	C	A	1.389e^-4	0.878	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20393993	3R_20393993_SNP [dm3] 3R_24568271_SNP [dm6]	G	A	1.395e^-4	0.878	INTRON CG13624	TF binding site BDTNP1_TFBS_da
3R	19573365	3R_19573365_SNP [dm3] 3R_23747643_SNP [dm6]	C	T	1.397e^-4	0.878	INTRON Hmgcr	TF binding site mE1_TFBS_chinmo
2R	15270925	2R_15270925_SNP [dm3] 2R_19383420_SNP [dm6]	G	C	1.397e^-4	0.878	NON_SYNONYMOUS_CODING CG10073
3L	22905840	3L_22905840_SNP [dm3] 3L_22912740_SNP [dm6]	T	A	1.412e^-4	0.878	INTRON CG12768
X	3256786	X_3256786_SNP [dm3] X_3362753_SNP [dm6]	G	A	1.414e^-4	0.878	INTERGENIC
3R	16304247	3R_16304247_SNP [dm3] 3R_20478525_SNP [dm6]	A	G	1.418e^-4	0.878	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5965640	3R_5965640_DEL [dm3] 3R_10139918_DEL [dm6]	CACCTCTTTC	C	1.422e^-4	0.878	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12353935	2R_12353935_SNP [dm3] 2R_16466430_SNP [dm6]	C	A	1.423e^-4	0.878	UPSTREAM CheB53a INTERGENIC
3L	8948303	3L_8948303_SNP [dm3] 3L_8955203_SNP [dm6]	C	T	1.428e^-4	0.878	SYNONYMOUS_CODING GNBP3 UPSTREAM CG43783 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1587896	2R_1587896_SNP [dm3] 2R_5700391_SNP [dm6]	C	T	1.428e^-4	0.878	DOWNSTREAM CG17337 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11457473	2L_11457473_SNP [dm3] 2L_11457473_SNP [dm6]	G	T	1.449e^-4	0.878	INTERGENIC
3R	22592584	3R_22592584_SNP [dm3] 3R_26766862_SNP [dm6]	G	A	1.452e^-4	0.878	INTERGENIC
3L	7690384	3L_7690384_SNP [dm3] 3L_7697284_SNP [dm6]	T	C	1.465e^-4	0.878	SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	23537983	3R_23537983_SNP [dm3] 3R_27712261_SNP [dm6]	T	A	1.480e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16070072	3R_16070072_SNP [dm3] 3R_20244350_SNP [dm6]	A	T	1.480e^-4	0.878	UTR_3_PRIME Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18137979	2R_18137979_INS [dm3] 2R_22250474_INS [dm6]	G	GTTCG	1.492e^-4	0.878	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17093022	3L_17093022_SNP [dm3] 3L_17099922_SNP [dm6]	G	C	1.494e^-4	0.878	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5193119	3R_5193119_SNP [dm3] 3R_9367397_SNP [dm6]	T	G	1.495e^-4	0.878	SYNONYMOUS_CODING CG8129 DOWNSTREAM FER
2L	17914403	2L_17914403_SNP [dm3] 2L_17914403_SNP [dm6]	T	A	1.499e^-4	0.878	UTR_3_PRIME CG43271 DOWNSTREAM CG43271
3L	4401281	3L_4401281_DEL [dm3] 3L_4401281_DEL [dm6]	TT	T	1.500e^-4	0.878	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15392820	3L_15392820_SNP [dm3] 3L_15399720_SNP [dm6]	C	T	1.504e^-4	0.878	INTERGENIC
3L	15380793	3L_15380793_SNP [dm3] 3L_15387693_SNP [dm6]	C	G	1.514e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5584593	3L_5584593_SNP [dm3] 3L_5591493_SNP [dm6]	T	C	1.515e^-4	0.878	SYNONYMOUS_CODING spo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21134440	X_21134440_SNP [dm3] X_21263413_SNP [dm6]	T	C	1.535e^-4	0.878	INTRON CG32521
3R	16307995	3R_16307995_SNP [dm3] 3R_20482273_SNP [dm6]	A	G	1.543e^-4	0.878	INTRON Gfrl
3L	15421499	3L_15421499_SNP [dm3] 3L_15428399_SNP [dm6]	C	T	1.551e^-4	0.878	INTERGENIC
2R	6374645	2R_6374645_SNP [dm3] 2R_10487140_SNP [dm6]	C	T	1.556e^-4	0.878	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10581692	3L_10581692_SNP [dm3] 3L_10588592_SNP [dm6]	T	A	1.558e^-4	0.878	INTRON A2bp1
2L	14752490	2L_14752490_INS [dm3] 2L_14752490_INS [dm6]	T	TT	1.568e^-4	0.878	INTERGENIC
2L	14752495	2L_14752495_SNP [dm3] 2L_14752495_SNP [dm6]	G	A	1.568e^-4	0.878	INTERGENIC
X	18847965	X_18847965_SNP [dm3] X_18953932_SNP [dm6]	C	T	1.572e^-4	0.878	INTRON CG43759
X	4273771	X_4273771_SNP [dm3] X_4379738_SNP [dm6]	T	C	1.577e^-4	0.878	INTERGENIC
2R	11983714	2R_11983714_SNP [dm3] 2R_16096209_SNP [dm6]	G	T	1.580e^-4	0.878	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24580143	3R_24580143_SNP [dm3] 3R_28754421_SNP [dm6]	G	T	1.581e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18151581	3R_18151581_SNP [dm3] 3R_22325859_SNP [dm6]	A	G	1.584e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14403146	3L_14403146_DEL [dm3] 3L_14410046_DEL [dm6]	CC	C	1.586e^-4	0.878	UPSTREAM CG3919 & 1 other DOWNSTREAM CR45233 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18915838	2L_18915838_SNP [dm3] 2L_18915838_SNP [dm6]	C	G	1.589e^-4	0.878	DOWNSTREAM ssp3 INTERGENIC
2L	7693515	2L_7693515_SNP [dm3] 2L_7693515_SNP [dm6]	A	G	1.590e^-4	0.878	UPSTREAM CG7025 DOWNSTREAM Tep2 INTRON CG43235
2L	4216119	2L_4216119_SNP [dm3] 2L_4216119_SNP [dm6]	A	G	1.592e^-4	0.878	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20372505	X_20372505_SNP [dm3] X_20501478_SNP [dm6]	T	G	1.596e^-4	0.878	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11023270	3L_11023270_SNP [dm3] 3L_11030170_SNP [dm6]	C	T	1.605e^-4	0.878	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17991412	2L_17991412_DEL [dm3] 2L_17991412_DEL [dm6]	GG	G	1.627e^-4	0.878	UTR_3_PRIME Prosbeta5R2
3R	5042138	3R_5042138_SNP [dm3] 3R_9216416_SNP [dm6]	T	G	1.628e^-4	0.878	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17952731	3R_17952731_DEL [dm3] 3R_22127009_DEL [dm6]	TCT	T	1.645e^-4	0.878	INTRON CG42390
3R	17952737	3R_17952737_SNP [dm3] 3R_22127015_SNP [dm6]	T	G	1.645e^-4	0.878	INTRON CG42390
X	6791219	X_6791219_SNP [dm3] X_6897186_SNP [dm6]	A	C	1.653e^-4	0.878	INTERGENIC
3R	14438705	3R_14438705_SNP [dm3] 3R_18612983_SNP [dm6]	A	G	1.654e^-4	0.878	INTRON qin & 1 other
2R	3650404	2R_3650404_SNP [dm3] 2R_7762899_SNP [dm6]	A	G	1.659e^-4	0.878	INTRON CG30497 & 1 other
3L	7876513	3L_7876513_SNP [dm3] 3L_7883413_SNP [dm6]	T	A	1.665e^-4	0.878	INTRON CG32365
3R	22592478	3R_22592478_SNP [dm3] 3R_26766756_SNP [dm6]	G	A	1.670e^-4	0.878	INTERGENIC
X	12271244	X_12271244_SNP [dm3] X_12377211_SNP [dm6]	G	A	1.696e^-4	0.878	SPLICE_SITE_REGION Ir11a INTRON Ir11a
3R	13755227	3R_13755227_INS [dm3] 3R_17929505_INS [dm6]	T	TAC	1.703e^-4	0.878	INTRON cpo
X	19013084	X_19013084_SNP [dm3] X_19119051_SNP [dm6]	T	G	1.710e^-4	0.878	INTERGENIC
2L	4300475	2L_4300475_SNP [dm3] 2L_4300475_SNP [dm6]	T	G	1.718e^-4	0.878	INTRON tutl
2L	17914350	2L_17914350_SNP [dm3] 2L_17914350_SNP [dm6]	C	A	1.727e^-4	0.878	DOWNSTREAM CG43271 INTERGENIC
3R	6100806	3R_6100806_INS [dm3] 3R_10275084_INS [dm6]	T	TTTATTTCTGCT...	1.731e^-4	0.878	INTRON CG43143
2R	11984498	2R_11984498_SNP [dm3] 2R_16096993_SNP [dm6]	G	T	1.739e^-4	0.878	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4008205	2L_4008205_SNP [dm3] 2L_4008205_SNP [dm6]	T	G	1.742e^-4	0.878	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
3R	7127563	3R_7127563_SNP [dm3] 3R_11301841_SNP [dm6]	A	T	1.742e^-4	0.878	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
X	250233	X_250233_SNP [dm3] X_356200_SNP [dm6]	G	A	1.744e^-4	0.878	UPSTREAM y INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	20114929	2R_20114929_SNP [dm3] 2R_24227406_SNP [dm6]	G	C	1.745e^-4	0.878	INTRON CG30419
2L	17988779	2L_17988779_SNP [dm3] 2L_17988779_SNP [dm6]	T	G	1.752e^-4	0.878	DOWNSTREAM CG5681 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26080981	3R_26080981_SNP [dm3] 3R_30255259_SNP [dm6]	C	A	1.762e^-4	0.878	INTERGENIC
X	18849527	X_18849527_SNP [dm3] X_18955494_SNP [dm6]	T	C	1.765e^-4	0.878	INTRON CG43759
3R	20550498	3R_20550498_SNP [dm3] 3R_24724776_SNP [dm6]	C	A	1.769e^-4	0.878	DOWNSTREAM snoRNA:Me18S-C1280 INTRON tok
2L	5449884	2L_5449884_SNP [dm3] 2L_5449884_SNP [dm6]	A	T	1.773e^-4	0.878	INTERGENIC
2R	15039179	2R_15039179_SNP [dm3] 2R_19151674_SNP [dm6]	A	C	1.788e^-4	0.878	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15785411	2L_15785411_SNP [dm3] 2L_15785411_SNP [dm6]	T	C	1.788e^-4	0.878	NON_SYNONYMOUS_CODING CG18109
3R	2692656	3R_2692656_SNP [dm3] 3R_6866934_SNP [dm6]	A	C	1.789e^-4	0.878	DOWNSTREAM ftz INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19876954	3R_19876954_INS [dm3] 3R_24051232_INS [dm6]	A	AT	1.799e^-4	0.878	UPSTREAM CG5991 & 1 other INTRON CG5991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1422939	2R_1422939_SNP [dm3] 2R_5535434_SNP [dm6]	T	C	1.806e^-4	0.878	INTRON CG30438	transposable element FlyBase
3L	22786865	3L_22786865_SNP [dm3] 3L_22793765_SNP [dm6]	T	C	1.815e^-4	0.878	UTR_3_PRIME jim
2L	9204721	2L_9204721_SNP [dm3] 2L_9204721_SNP [dm6]	T	C	1.822e^-4	0.878	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10395323	X_10395323_INS [dm3] X_10501290_INS [dm6]	A	AA	1.832e^-4	0.878	INTRON spri
X	7751880	X_7751880_SNP [dm3] X_7857847_SNP [dm6]	C	T	1.833e^-4	0.878	UPSTREAM CG1409 INTERGENIC
2R	6111596	2R_6111596_SNP [dm3] 2R_10224091_SNP [dm6]	C	A	1.841e^-4	0.878	INTRON Hr46 & 1 other
2R	6861861	2R_6861861_SNP [dm3] 2R_10974356_SNP [dm6]	A	G	1.844e^-4	0.878	INTERGENIC
2L	3631495	2L_3631495_SNP [dm3] 2L_3631495_SNP [dm6]	A	G	1.848e^-4	0.878	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	7751811	X_7751811_SNP [dm3] X_7857778_SNP [dm6]	T	A	1.850e^-4	0.878	UPSTREAM CG1409 INTERGENIC
3R	15125377	3R_15125377_SNP [dm3] 3R_19299655_SNP [dm6]	G	A	1.854e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_sens
X	7208546	X_7208546_INS [dm3] X_7314513_INS [dm6]	A	ACCA	1.854e^-4	0.878	DOWNSTREAM Atg5 INTRON CR44357 & 1 other
X	4273620	X_4273620_SNP [dm3] X_4379587_SNP [dm6]	A	G	1.856e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_sens
X	19874254	X_19874254_SNP [dm3] X_19980221_SNP [dm6]	A	G	1.859e^-4	0.878	INTERGENIC
3R	16304163	3R_16304163_SNP [dm3] 3R_20478441_SNP [dm6]	T	C	1.859e^-4	0.878	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi
3L	18203808	3L_18203808_SNP [dm3] 3L_18210708_SNP [dm6]	A	G	1.864e^-4	0.878	INTERGENIC
2L	5909449	2L_5909449_SNP [dm3] 2L_5909449_SNP [dm6]	T	G	1.871e^-4	0.878	NON_SYNONYMOUS_CODING CG14000 INTRON bchs
3R	2737784	3R_2737784_SNP [dm3] 3R_6912062_SNP [dm6]	G	C	1.879e^-4	0.878	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3L	22753723	3L_22753723_SNP [dm3] 3L_22760623_SNP [dm6]	C	A	1.880e^-4	0.878	INTRON SPoCk
3L	13877631	3L_13877631_SNP [dm3] 3L_13884531_SNP [dm6]	G	T	1.882e^-4	0.878	INTRON dysc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15317647	X_15317647_SNP [dm3] X_15423614_SNP [dm6]	A	G	1.891e^-4	0.878	INTRON Cngl
2R	10804007	2R_10804007_INS [dm3] 2R_14916502_INS [dm6]	T	GATAATATA	1.891e^-4	0.878	INTRON CG10249
3R	2685061	3R_2685061_SNP [dm3] 3R_6859339_SNP [dm6]	G	T	1.902e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
X	8776719	X_8776719_SNP [dm3] X_8882686_SNP [dm6]	A	C	1.906e^-4	0.878	INTRON Moe
X	12035718	X_12035718_SNP [dm3] X_12141685_SNP [dm6]	T	G	1.916e^-4	0.878	INTRON Ten-a
3R	18523202	3R_18523202_SNP [dm3] 3R_22697480_SNP [dm6]	T	C	1.917e^-4	0.878	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18523219	3R_18523219_SNP [dm3] 3R_22697497_SNP [dm6]	T	G	1.917e^-4	0.878	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
2R	12534247	2R_12534247_SNP [dm3] 2R_16646742_SNP [dm6]	C	T	1.924e^-4	0.878	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18319678	3L_18319678_SNP [dm3] 3L_18326578_SNP [dm6]	A	C	1.927e^-4	0.878	INTERGENIC
3R	22220952	3R_22220952_SNP [dm3] 3R_26395230_SNP [dm6]	G	A	1.932e^-4	0.878	INTERGENIC
2R	19219614	2R_19219614_SNP [dm3] 2R_23332091_SNP [dm6]	T	C	1.933e^-4	0.878	INTERGENIC
3R	17952777	3R_17952777_SNP [dm3] 3R_22127055_SNP [dm6]	A	T	1.937e^-4	0.878	INTRON CG42390
3L	14407250	3L_14407250_SNP [dm3] 3L_14414150_SNP [dm6]	A	C	1.944e^-4	0.878	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad
3L	4401275	3L_4401275_SNP [dm3] 3L_4401275_SNP [dm6]	C	A	1.948e^-4	0.878	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	19874495	X_19874495_SNP [dm3] X_19980462_SNP [dm6]	C	G	1.949e^-4	0.878	INTERGENIC
3R	18523304	3R_18523304_SNP [dm3] 3R_22697582_SNP [dm6]	A	T	1.949e^-4	0.878	SPLICE_SITE_REGION cd UPSTREAM Cyp6d4 INTRON cd
3R	2679991	3R_2679991_SNP [dm3] 3R_6854269_SNP [dm6]	C	A	1.959e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25562153	3R_25562153_SNP [dm3] 3R_29736431_SNP [dm6]	C	A	1.959e^-4	0.878	SPLICE_SITE_REGION CG7601 SYNONYMOUS_CODING CG7601 UPSTREAM CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2L	7546291	2L_7546291_SNP [dm3] 2L_7546291_SNP [dm6]	C	T	1.959e^-4	0.878	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1
3R	2628470	3R_2628470_SNP [dm3] 3R_6802748_SNP [dm6]	C	T	1.970e^-4	0.878	DOWNSTREAM Dfd INTERGENIC
3L	8947961	3L_8947961_SNP [dm3] 3L_8954861_SNP [dm6]	C	T	1.981e^-4	0.878	UPSTREAM GNBP3 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	7155042	2L_7155042_SNP [dm3] 2L_7155042_SNP [dm6]	C	G	1.989e^-4	0.878	INTRON Pvf3
X	17974882	X_17974882_SNP [dm3] X_18080849_SNP [dm6]	T	C	1.992e^-4	0.878	SYNONYMOUS_CODING CG7536	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17952796	3R_17952796_SNP [dm3] 3R_22127074_SNP [dm6]	T	A	2.004e^-4	0.878	INTRON CG42390
3R	26933587	3R_26933587_SNP [dm3] 3R_31107865_SNP [dm6]	C	T	2.009e^-4	0.878	SYNONYMOUS_CODING CG11318
3L	17982645	3L_17982645_SNP [dm3] 3L_17989545_SNP [dm6]	G	C	2.013e^-4	0.878	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24964072	3R_24964072_SNP [dm3] 3R_29138350_SNP [dm6]	T	C	2.022e^-4	0.878	SYNONYMOUS_CODING CG14512 UPSTREAM CG14516 DOWNSTREAM Vha100-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	12313077	3R_12313077_SNP [dm3] 3R_16487355_SNP [dm6]	C	T	2.024e^-4	0.878	INTRON Cad89D
2L	17914315	2L_17914315_SNP [dm3] 2L_17914315_SNP [dm6]	G	T	2.027e^-4	0.878	DOWNSTREAM CG43271 INTERGENIC
2R	10515181	2R_10515181_SNP [dm3] 2R_14627676_SNP [dm6]	G	A	2.029e^-4	0.878	INTERGENIC
2R	19133375	2R_19133375_SNP [dm3] 2R_23245852_SNP [dm6]	C	G	2.031e^-4	0.878	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
3L	11934516	3L_11934516_SNP [dm3] 3L_11941416_SNP [dm6]	C	T	2.036e^-4	0.878	UPSTREAM Rpt4R INTERGENIC
X	12508368	X_12508368_SNP [dm3] X_12614335_SNP [dm6]	A	G	2.040e^-4	0.878	SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621
X	4225738	X_4225738_INS [dm3] X_4331705_INS [dm6]	A	AA	2.068e^-4	0.878	INTRON norpA
3R	2705902	3R_2705902_SNP [dm3] 3R_6880180_SNP [dm6]	A	G	2.073e^-4	0.878	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
3R	14647059	3R_14647059_SNP [dm3] 3R_18821337_SNP [dm6]	G	T	2.074e^-4	0.878	INTRON CG18208
X	15551741	X_15551741_SNP [dm3] X_15657708_SNP [dm6]	G	C	2.074e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	5214871	3R_5214871_SNP [dm3] 3R_9389149_SNP [dm6]	G	A	2.079e^-4	0.878	INTRON FER
X	11235799	X_11235799_SNP [dm3] X_11341766_SNP [dm6]	C	T	2.083e^-4	0.878	INTRON CG34348	TF binding site BDTNP1_TFBS_dl
2R	1418684	2R_1418684_SNP [dm3] 2R_5531179_SNP [dm6]	G	T	2.083e^-4	0.878	INTRON CG30438
2R	15109257	2R_15109257_SNP [dm3] 2R_19221752_SNP [dm6]	G	T	2.084e^-4	0.878	INTRON hppy
3L	17261195	3L_17261195_INS [dm3] 3L_17268095_INS [dm6]	T	TT	2.090e^-4	0.878	INTERGENIC
3L	18185229	3L_18185229_SNP [dm3] 3L_18192129_SNP [dm6]	T	C	2.094e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	19875717	X_19875717_SNP [dm3] X_19981684_SNP [dm6]	C	T	2.099e^-4	0.878	INTERGENIC
2R	6119550	2R_6119550_SNP [dm3] 2R_10232045_SNP [dm6]	C	T	2.103e^-4	0.878	NON_SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	17952725	3R_17952725_SNP [dm3] 3R_22127003_SNP [dm6]	A	G	2.113e^-4	0.878	INTRON CG42390
2R	10803984	2R_10803984_SNP [dm3] 2R_14916479_SNP [dm6]	A	C	2.121e^-4	0.878	INTRON CG10249
3L	9672035	3L_9672035_SNP [dm3] 3L_9678935_SNP [dm6]	T	G	2.124e^-4	0.878	UTR_5_PRIME fry UPSTREAM CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	19217778	3L_19217778_SNP [dm3] 3L_19224678_SNP [dm6]	G	C	2.156e^-4	0.878	INTRON fz2
2R	16539182	2R_16539182_SNP [dm3] 2R_20651677_SNP [dm6]	C	A	2.158e^-4	0.878	DOWNSTREAM CG16799 INTRON Lrt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7187041	2L_7187041_SNP [dm3] 2L_7187041_SNP [dm6]	G	A	2.160e^-4	0.878	NON_SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
3R	2708297	3R_2708297_SNP [dm3] 3R_6882575_SNP [dm6]	G	T	2.163e^-4	0.878	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	2310169	3R_2310169_SNP [dm3] 3R_6484447_SNP [dm6]	C	A	2.169e^-4	0.878	INTRON CG15186
2R	1592575	2R_1592575_SNP [dm3] 2R_5705070_SNP [dm6]	G	A	2.170e^-4	0.878	UTR_3_PRIME vlc
2L	13274864	2L_13274864_SNP [dm3] 2L_13274864_SNP [dm6]	T	A	2.175e^-4	0.878	INTRON CG44085
2L	6837485	2L_6837485_SNP [dm3] 2L_6837485_SNP [dm6]	T	A	2.177e^-4	0.878	INTRON sens-2
3R	16725599	3R_16725599_SNP [dm3] 3R_20899877_SNP [dm6]	G	A	2.185e^-4	0.878	INTERGENIC
2R	11041826	2R_11041826_DEL [dm3] 2R_15154321_DEL [dm6]	AA	A	2.187e^-4	0.878	INTERGENIC
2R	19120906	2R_19120906_SNP [dm3] 2R_23233383_SNP [dm6]	A	G	2.202e^-4	0.878	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15392816	3L_15392816_SNP [dm3] 3L_15399716_SNP [dm6]	C	T	2.203e^-4	0.878	INTERGENIC
3L	15392830	3L_15392830_SNP [dm3] 3L_15399730_SNP [dm6]	G	T	2.211e^-4	0.878	INTERGENIC
3R	16519380	3R_16519380_SNP [dm3] 3R_20693658_SNP [dm6]	C	T	2.213e^-4	0.878	SYNONYMOUS_CODING Oamb INTRON Oamb	TF binding site mE1_TFBS_cad
2R	1667453	2R_1667453_SNP [dm3] 2R_5779948_SNP [dm6]	C	T	2.231e^-4	0.878	INTRON ZnT41F
2L	7237654	2L_7237654_SNP [dm3] 2L_7237654_SNP [dm6]	A	T	2.231e^-4	0.878	INTRON Ndae1
2L	18113306	2L_18113306_SNP [dm3] 2L_18113306_SNP [dm6]	A	C	2.242e^-4	0.878	UPSTREAM CG44476 INTERGENIC
X	11269997	X_11269997_SNP [dm3] X_11375964_SNP [dm6]	G	C	2.244e^-4	0.878	SYNONYMOUS_CODING dlg1 INTRON dlg1
3R	15008984	3R_15008984_SNP [dm3] 3R_19183262_SNP [dm6]	G	T	2.245e^-4	0.878	INTRON CG31475
2R	17937698	2R_17937698_INS [dm3] 2R_22050193_INS [dm6]	A	AC	2.245e^-4	0.878	INTERGENIC
3R	14736925	3R_14736925_SNP [dm3] 3R_18911203_SNP [dm6]	A	G	2.250e^-4	0.878	UTR_3_PRIME CG14291 DOWNSTREAM EndoA	TF binding site mE1_TFBS_cad
3R	16304090	3R_16304090_SNP [dm3] 3R_20478368_SNP [dm6]	T	A	2.251e^-4	0.878	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi
2L	7325740	2L_7325740_DEL [dm3] 2L_7325740_DEL [dm6]	ACTTGCCGAGCCCCA...	A	2.255e^-4	0.878	INTERGENIC
2L	3438779	2L_3438779_SNP [dm3] 2L_3438779_SNP [dm6]	C	A	2.267e^-4	0.878	INTERGENIC
3R	15119201	3R_15119201_INS [dm3] 3R_19293479_INS [dm6]	A	ACTGTTAAGT	2.267e^-4	0.878	INTERGENIC
2R	6111675	2R_6111675_SNP [dm3] 2R_10224170_SNP [dm6]	T	A	2.270e^-4	0.878	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
2L	11785571	2L_11785571_SNP [dm3] 2L_11785571_SNP [dm6]	T	C	2.270e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6298014	3L_6298014_SNP [dm3] 3L_6304914_SNP [dm6]	C	T	2.279e^-4	0.878	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
3L	3128160	3L_3128160_SNP [dm3] 3L_3128160_SNP [dm6]	C	A	2.295e^-4	0.878	UTR_3_PRIME CG11537 UPSTREAM prominin-like DOWNSTREAM CG11537	TF binding site BDTNP1_TFBS_dl
2L	8442292	2L_8442292_SNP [dm3] 2L_8442292_SNP [dm6]	G	A	2.297e^-4	0.878	SYNONYMOUS_CODING mus201 UPSTREAM CG31897
3R	23542766	3R_23542766_SNP [dm3] 3R_27717044_SNP [dm6]	G	C	2.304e^-4	0.878	INTERGENIC
2L	9950238	2L_9950238_SNP [dm3] 2L_9950238_SNP [dm6]	G	C	2.313e^-4	0.878	DOWNSTREAM mir-87 INTERGENIC
2R	7106908	2R_7106908_SNP [dm3] 2R_11219403_SNP [dm6]	A	G	2.315e^-4	0.878	UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	16517276	3R_16517276_SNP [dm3] 3R_20691554_SNP [dm6]	C	G	2.316e^-4	0.878	DOWNSTREAM Oamb INTRON Oamb	TF binding site mE1_TFBS_cad
3R	20589181	3R_20589181_SNP [dm3] 3R_24763459_SNP [dm6]	G	A	2.326e^-4	0.878	INTRON AstA
3R	2737994	3R_2737994_SNP [dm3] 3R_6912272_SNP [dm6]	A	C	2.334e^-4	0.878	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14478063	2R_14478063_SNP [dm3] 2R_18590558_SNP [dm6]	A	C	2.334e^-4	0.878	INTRON GEFmeso
X	20946228	X_20946228_DEL [dm3] X_21075201_DEL [dm6]	AAA	G	2.340e^-4	0.878	INTRON bves
2R	10803986	2R_10803986_INS [dm3] 2R_14916481_INS [dm6]	G	GAGCCCAAAAGG...	2.345e^-4	0.878	INTRON CG10249
X	2603293	X_2603293_SNP [dm3] X_2709260_SNP [dm6]	A	G	2.353e^-4	0.878	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
3R	2688789	3R_2688789_SNP [dm3] 3R_6863067_SNP [dm6]	G	A	2.355e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18159466	3R_18159466_SNP [dm3] 3R_22333744_SNP [dm6]	T	C	2.357e^-4	0.878	DOWNSTREAM CG5388 INTRON CG5391
2R	14494202	2R_14494202_SNP [dm3] 2R_18606697_SNP [dm6]	A	G	2.364e^-4	0.878	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	25079056	3R_25079056_SNP [dm3] 3R_29253334_SNP [dm6]	G	A	2.369e^-4	0.878	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	2289563	3R_2289563_SNP [dm3] 3R_6463841_SNP [dm6]	C	T	2.369e^-4	0.878	INTERGENIC
2R	11886948	2R_11886948_SNP [dm3] 2R_15999443_SNP [dm6]	A	T	2.370e^-4	0.878	INTRON ATPCL
3R	16305473	3R_16305473_SNP [dm3] 3R_20479751_SNP [dm6]	T	C	2.373e^-4	0.878	INTRON Gfrl
X	4225725	X_4225725_SNP [dm3] X_4331692_SNP [dm6]	A	G	2.377e^-4	0.878	INTRON norpA
X	7010068	X_7010068_SNP [dm3] X_7116035_SNP [dm6]	A	C	2.384e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16521802	3R_16521802_SNP [dm3] 3R_20696080_SNP [dm6]	T	C	2.388e^-4	0.878	INTRON Oamb
X	4273775	X_4273775_SNP [dm3] X_4379742_SNP [dm6]	C	G	2.408e^-4	0.878	INTERGENIC
X	5051620	X_5051620_SNP [dm3] X_5157587_SNP [dm6]	A	T	2.412e^-4	0.878	INTRON rg & 1 other
2L	7805713	2L_7805713_SNP [dm3] 2L_7805713_SNP [dm6]	G	A	2.412e^-4	0.878	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3659256	X_3659256_SNP [dm3] X_3765223_SNP [dm6]	T	G	2.422e^-4	0.878	INTRON tlk
3R	19120991	3R_19120991_SNP [dm3] 3R_23295269_SNP [dm6]	C	T	2.459e^-4	0.878	UPSTREAM pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6996541	2R_6996541_INS [dm3] 2R_11109036_INS [dm6]	A	AGA	2.460e^-4	0.878	INTRON luna
2L	9164970	2L_9164970_SNP [dm3] 2L_9164970_SNP [dm6]	T	C	2.462e^-4	0.878	DOWNSTREAM CG9586 INTRON CG13108
3L	22784913	3L_22784913_SNP [dm3] 3L_22791813_SNP [dm6]	C	T	2.473e^-4	0.878	UTR_3_PRIME jim
3L	11794430	3L_11794430_SNP [dm3] 3L_11801330_SNP [dm6]	T	A	2.473e^-4	0.878	UPSTREAM CG10361 DOWNSTREAM tRNA:CR32093 & 1 other INTERGENIC
3R	19876916	3R_19876916_SNP [dm3] 3R_24051194_SNP [dm6]	C	A	2.479e^-4	0.878	UPSTREAM CG5991 & 1 other INTRON CG5991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18704731	2R_18704731_SNP [dm3] 2R_22817226_SNP [dm6]	G	T	2.480e^-4	0.878	UPSTREAM CG30271 INTRON CG30271
3R	25562138	3R_25562138_SNP [dm3] 3R_29736416_SNP [dm6]	C	A	2.481e^-4	0.878	SYNONYMOUS_CODING CG7601 UPSTREAM CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2L	7325480	2L_7325480_SNP [dm3] 2L_7325480_SNP [dm6]	G	T	2.486e^-4	0.878	INTERGENIC
2L	3579213	2L_3579213_SNP [dm3] 2L_3579213_SNP [dm6]	A	G	2.494e^-4	0.878	SYNONYMOUS_CODING sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21110723	X_21110723_SNP [dm3] X_21239696_SNP [dm6]	T	C	2.497e^-4	0.878	INTRON CG32521
3L	14965893	3L_14965893_SNP [dm3] 3L_14972793_SNP [dm6]	C	G	2.501e^-4	0.878	NON_SYNONYMOUS_CODING Brd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	911233	3L_911233_SNP [dm3] 3L_911233_SNP [dm6]	T	C	2.502e^-4	0.878	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3R	9686671	3R_9686671_SNP [dm3] 3R_13860949_SNP [dm6]	G	A	2.505e^-4	0.878	INTERGENIC
3R	26933439	3R_26933439_SNP [dm3] 3R_31107717_SNP [dm6]	T	A	2.509e^-4	0.878	NON_SYNONYMOUS_CODING CG11318
3R	26855041	3R_26855041_SNP [dm3] 3R_31029319_SNP [dm6]	A	C	2.525e^-4	0.878	INTERGENIC
3R	26855013	3R_26855013_SNP [dm3] 3R_31029291_SNP [dm6]	A	G	2.525e^-4	0.878	INTERGENIC
2R	19984667	2R_19984667_SNP [dm3] 2R_24097144_SNP [dm6]	C	G	2.525e^-4	0.878	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10803992	2R_10803992_SNP [dm3] 2R_14916487_SNP [dm6]	A	T	2.540e^-4	0.878	INTRON CG10249
3L	10594980	3L_10594980_SNP [dm3] 3L_10601880_SNP [dm6]	A	T	2.545e^-4	0.878	INTERGENIC
2L	11940015	2L_11940015_INS [dm3] 2L_11940015_INS [dm6]	A	AAGGTATAA	2.548e^-4	0.878	DOWNSTREAM Or33c INTERGENIC
2R	14166716	2R_14166716_INS [dm3] 2R_18279211_INS [dm6]	T	AG	2.556e^-4	0.878	UTR_3_PRIME sbb DOWNSTREAM pen-2
2R	14166718	2R_14166718_MNP [dm3] 2R_18279213_MNP [dm6]	GTC	AAA	2.556e^-4	0.878	UTR_3_PRIME sbb DOWNSTREAM pen-2
X	2408381	X_2408381_SNP [dm3] X_2514348_SNP [dm6]	G	A	2.581e^-4	0.878	INTRON trol
3R	17296797	3R_17296797_SNP [dm3] 3R_21471075_SNP [dm6]	G	A	2.583e^-4	0.878	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12540349	2R_12540349_SNP [dm3] 2R_16652844_SNP [dm6]	T	C	2.583e^-4	0.878	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3L	9823485	3L_9823485_SNP [dm3] 3L_9830385_SNP [dm6]	C	T	2.591e^-4	0.878	INTRON CG43897	TF binding site mE1_TFBS_chinmo
3L	15392798	3L_15392798_SNP [dm3] 3L_15399698_SNP [dm6]	A	T	2.593e^-4	0.878	INTERGENIC
3L	9672565	3L_9672565_SNP [dm3] 3L_9679465_SNP [dm6]	A	T	2.597e^-4	0.878	SPLICE_SITE_REGION CG16717 UTR_5_PRIME CG16717 UPSTREAM fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7187631	2L_7187631_SNP [dm3] 2L_7187631_SNP [dm6]	C	T	2.602e^-4	0.878	SYNONYMOUS_CODING CG4496
X	20946252	X_20946252_SNP [dm3] X_21075225_SNP [dm6]	A	G	2.604e^-4	0.878	INTRON bves
X	17232773	X_17232773_SNP [dm3] X_17338740_SNP [dm6]	A	G	2.613e^-4	0.878	INTERGENIC
2L	16440742	2L_16440742_SNP [dm3] 2L_16440742_SNP [dm6]	A	C	2.615e^-4	0.878	INTRON CG5888
2L	11499178	2L_11499178_SNP [dm3] 2L_11499178_SNP [dm6]	A	G	2.618e^-4	0.878	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17998386	2L_17998386_SNP [dm3] 2L_17998386_SNP [dm6]	C	T	2.624e^-4	0.878	INTERGENIC
3L	1754393	3L_1754393_DEL [dm3] 3L_1754393_DEL [dm6]	AATGGAGA	A	2.626e^-4	0.878	UTR_5_PRIME Cht2 INTRON Cht2
3L	17657402	3L_17657402_SNP [dm3] 3L_17664302_SNP [dm6]	T	C	2.637e^-4	0.878	SYNONYMOUS_CODING Crtc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9671820	3L_9671820_SNP [dm3] 3L_9678720_SNP [dm6]	C	T	2.639e^-4	0.878	UPSTREAM CG16717 INTRON fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9671832	3L_9671832_SNP [dm3] 3L_9678732_SNP [dm6]	T	A	2.639e^-4	0.878	UPSTREAM CG16717 INTRON fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9983948	2L_9983948_SNP [dm3] 2L_9983948_SNP [dm6]	G	A	2.655e^-4	0.878	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	16564367	3L_16564367_SNP [dm3] 3L_16571267_SNP [dm6]	T	G	2.658e^-4	0.878	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10332662	2L_10332662_SNP [dm3] 2L_10332662_SNP [dm6]	T	C	2.662e^-4	0.878	NON_SYNONYMOUS_CODING CG5037	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18073606	X_18073606_SNP [dm3] X_18179573_SNP [dm6]	A	G	2.665e^-4	0.878	UPSTREAM Andorra INTRON Frq2
3L	487647	3L_487647_SNP [dm3] 3L_487647_SNP [dm6]	T	A	2.667e^-4	0.878	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2531043	3L_2531043_SNP [dm3] 3L_2531043_SNP [dm6]	T	C	2.668e^-4	0.878	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9115598	3L_9115598_SNP [dm3] 3L_9122498_SNP [dm6]	A	G	2.670e^-4	0.878	INTRON bol
X	4756087	X_4756087_SNP [dm3] X_4862054_SNP [dm6]	C	T	2.672e^-4	0.878	INTRON CG42594
3L	15785463	3L_15785463_SNP [dm3] 3L_15792363_SNP [dm6]	T	G	2.674e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17988998	2L_17988998_SNP [dm3] 2L_17988998_SNP [dm6]	G	A	2.681e^-4	0.878	DOWNSTREAM CG5681 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4191749	2L_4191749_SNP [dm3] 2L_4191749_SNP [dm6]	T	A	2.683e^-4	0.878	INTRON CG3714
3L	2349997	3L_2349997_SNP [dm3] 3L_2349997_SNP [dm6]	A	C	2.698e^-4	0.878	INTERGENIC
2R	17470039	2R_17470039_DEL [dm3] 2R_21582534_DEL [dm6]	GTCTTCAA	CG	2.702e^-4	0.878	UPSTREAM CG30222 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5593403	3R_5593403_SNP [dm3] 3R_9767681_SNP [dm6]	G	T	2.702e^-4	0.878	UTR_5_PRIME MED6 UPSTREAM CG8481	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1574723	2R_1574723_DEL [dm3] 2R_5687218_DEL [dm6]	TT	T	2.705e^-4	0.878	INTRON scaf
2L	18648496	2L_18648496_SNP [dm3] 2L_18648496_SNP [dm6]	T	A	2.715e^-4	0.878	INTRON MESR3
2L	19874712	2L_19874712_SNP [dm3] 2L_19874712_SNP [dm6]	T	C	2.717e^-4	0.878	INTRON sick	TF binding site mE1_TFBS_cad
X	11436555	X_11436555_SNP [dm3] X_11542522_SNP [dm6]	C	G	2.720e^-4	0.878	INTRON Drak
3L	15793381	3L_15793381_DEL [dm3] 3L_15800281_DEL [dm6]	TG	C	2.722e^-4	0.878	INTERGENIC
2R	10804016	2R_10804016_INS [dm3] 2R_14916511_INS [dm6]	A	ACTGCTTGAAAATTATAAAC...	2.724e^-4	0.878	INTRON CG10249
3R	16521866	3R_16521866_SNP [dm3] 3R_20696144_SNP [dm6]	A	C	2.725e^-4	0.878	INTRON Oamb
X	17974971	X_17974971_SNP [dm3] X_18080938_SNP [dm6]	G	A	2.730e^-4	0.878	SYNONYMOUS_CODING CG7536	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10028367	3L_10028367_SNP [dm3] 3L_10035267_SNP [dm6]	G	T	2.738e^-4	0.878	INTRON dpr6
3R	1983531	3R_1983531_SNP [dm3] 3R_6157809_SNP [dm6]	T	A	2.755e^-4	0.878	UPSTREAM CG31559 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12271248	X_12271248_SNP [dm3] X_12377215_SNP [dm6]	G	A	2.758e^-4	0.878	INTRON Ir11a
3L	14407327	3L_14407327_SNP [dm3] 3L_14414227_SNP [dm6]	G	A	2.760e^-4	0.878	NON_SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad
3R	18844758	3R_18844758_SNP [dm3] 3R_23019036_SNP [dm6]	A	G	2.771e^-4	0.878	INTERGENIC
2L	12312809	2L_12312809_SNP [dm3] 2L_12312809_SNP [dm6]	T	C	2.797e^-4	0.878	UTR_3_PRIME aret DOWNSTREAM aret
3L	9808436	3L_9808436_SNP [dm3] 3L_9815336_SNP [dm6]	G	A	2.806e^-4	0.878	UPSTREAM CG43897 INTRON CG43897
3L	4490329	3L_4490329_SNP [dm3] 3L_4490329_SNP [dm6]	A	G	2.809e^-4	0.878	INTRON CG13722
2R	2622659	2R_2622659_SNP [dm3] 2R_6735154_SNP [dm6]	G	A	2.813e^-4	0.878	INTRON l_2_01289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10391354	2L_10391354_SNP [dm3] 2L_10391354_SNP [dm6]	T	G	2.813e^-4	0.878	SYNONYMOUS_CODING da	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2408688	3R_2408688_SNP [dm3] 3R_6582966_SNP [dm6]	C	T	2.834e^-4	0.878	DOWNSTREAM CG2336 INTRON dpr11
2R	7154545	2R_7154545_SNP [dm3] 2R_11267040_SNP [dm6]	G	A	2.837e^-4	0.878	UTR_3_PRIME Cpr47Ef DOWNSTREAM Cpr47Ee
3R	26855039	3R_26855039_SNP [dm3] 3R_31029317_SNP [dm6]	A	G	2.842e^-4	0.878	INTERGENIC
X	19352512	X_19352512_SNP [dm3] X_19458479_SNP [dm6]	C	T	2.858e^-4	0.878	INTRON kek5	TF binding site mE1_TFBS_Kr
X	2687088	X_2687088_SNP [dm3] X_2793055_SNP [dm6]	C	A	2.868e^-4	0.878	NON_SYNONYMOUS_CODING w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10368297	2R_10368297_SNP [dm3] 2R_14480792_SNP [dm6]	C	T	2.869e^-4	0.878	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	5084111	X_5084111_DEL [dm3] X_5190078_DEL [dm6]	TTGTGCCTGTATGTGTGTGC...	T	2.871e^-4	0.878	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12419467	X_12419467_SNP [dm3] X_12525434_SNP [dm6]	G	C	2.875e^-4	0.878	INTRON CG43921
X	17443380	X_17443380_DEL [dm3] X_17549347_DEL [dm6]	TGCAGCCGGAGCTGGACCAT...	T	2.885e^-4	0.878	INTRON CG43658
3L	2283072	3L_2283072_SNP [dm3] 3L_2283072_SNP [dm6]	G	C	2.886e^-4	0.878	START_GAINED MsR2 UTR_5_PRIME MsR2 INTRON MsR2
X	6406829	X_6406829_SNP [dm3] X_6512796_SNP [dm6]	C	T	2.890e^-4	0.878	INTRON CG42340
2R	14166724	2R_14166724_SNP [dm3] 2R_18279219_SNP [dm6]	C	T	2.895e^-4	0.878	UTR_3_PRIME sbb DOWNSTREAM pen-2
3R	17390140	3R_17390140_SNP [dm3] 3R_21564418_SNP [dm6]	C	A	2.901e^-4	0.878	INTERGENIC
3L	22630910	3L_22630910_SNP [dm3] 3L_22637810_SNP [dm6]	A	G	2.902e^-4	0.878	UTR_5_PRIME CG14459
3R	13747223	3R_13747223_SNP [dm3] 3R_17921501_SNP [dm6]	G	A	2.906e^-4	0.878	INTRON cpo
2L	471761	2L_471761_SNP [dm3] 2L_471761_SNP [dm6]	C	G	2.911e^-4	0.878	START_GAINED CG4297 UTR_5_PRIME CG4297 INTRON CG4297	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21686122	3R_21686122_DEL [dm3] 3R_25860400_DEL [dm6]	TTT	T	2.918e^-4	0.878	INTRON CG5890
3R	10646275	3R_10646275_SNP [dm3] 3R_14820553_SNP [dm6]	G	T	2.919e^-4	0.878	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14397306	3L_14397306_SNP [dm3] 3L_14404206_SNP [dm6]	G	T	2.920e^-4	0.878	NON_SYNONYMOUS_CODING stwl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18254806	3L_18254806_SNP [dm3] 3L_18261706_SNP [dm6]	A	C	2.922e^-4	0.878	INTERGENIC
2L	13274886	2L_13274886_SNP [dm3] 2L_13274886_SNP [dm6]	C	T	2.928e^-4	0.878	INTRON CG44085
X	15099311	X_15099311_SNP [dm3] X_15205278_SNP [dm6]	C	G	2.932e^-4	0.878	DOWNSTREAM CG32588 INTERGENIC
X	15099357	X_15099357_SNP [dm3] X_15205324_SNP [dm6]	C	T	2.932e^-4	0.878	DOWNSTREAM CG32588 INTERGENIC
2L	18789636	2L_18789636_SNP [dm3] 2L_18789636_SNP [dm6]	T	A	2.936e^-4	0.878	INTRON ham	TF binding site mE1_TFBS_cad
3L	4401245	3L_4401245_SNP [dm3] 3L_4401245_SNP [dm6]	T	A	2.938e^-4	0.878	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8869231	2R_8869231_SNP [dm3] 2R_12981726_SNP [dm6]	A	G	2.948e^-4	0.878	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	3651693	2R_3651693_SNP [dm3] 2R_7764188_SNP [dm6]	T	A	2.950e^-4	0.878	INTRON CG30497 & 1 other
2R	8462883	2R_8462883_SNP [dm3] 2R_12575378_SNP [dm6]	T	A	2.952e^-4	0.878	UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3R	10622152	3R_10622152_SNP [dm3] 3R_14796430_SNP [dm6]	C	T	2.953e^-4	0.878	START_GAINED CG14855 UTR_5_PRIME CG14855 DOWNSTREAM jvl
3R	23476328	3R_23476328_SNP [dm3] 3R_27650606_SNP [dm6]	G	A	2.962e^-4	0.878	DOWNSTREAM tau INTRON tau
X	2412246	X_2412246_SNP [dm3] X_2518213_SNP [dm6]	G	C	2.964e^-4	0.878	UPSTREAM trol INTRON trol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14421176	2R_14421176_SNP [dm3] 2R_18533671_SNP [dm6]	T	C	2.964e^-4	0.878	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17443513	X_17443513_SNP [dm3] X_17549480_SNP [dm6]	G	T	2.965e^-4	0.878	INTRON CG43658
3L	10690258	3L_10690258_SNP [dm3] 3L_10697158_SNP [dm6]	G	A	2.966e^-4	0.878	UPSTREAM NijA INTERGENIC
X	21174950	X_21174950_SNP [dm3] X_21303923_SNP [dm6]	G	A	2.971e^-4	0.878	UPSTREAM tRNA:CR32525 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3L	10742943	3L_10742943_SNP [dm3] 3L_10749843_SNP [dm6]	G	A	2.973e^-4	0.878	INTERGENIC
2R	13095286	2R_13095286_SNP [dm3] 2R_17207781_SNP [dm6]	A	C	2.974e^-4	0.878	INTERGENIC
3R	16522461	3R_16522461_SNP [dm3] 3R_20696739_SNP [dm6]	C	T	2.975e^-4	0.878	INTRON Oamb
3R	13755147	3R_13755147_SNP [dm3] 3R_17929425_SNP [dm6]	T	C	2.983e^-4	0.878	INTRON cpo
3R	19876906	3R_19876906_SNP [dm3] 3R_24051184_SNP [dm6]	C	T	2.992e^-4	0.878	UPSTREAM CG5991 & 1 other INTRON CG5991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18648507	2L_18648507_SNP [dm3] 2L_18648507_SNP [dm6]	A	T	2.993e^-4	0.878	INTRON MESR3
2L	5405858	2L_5405858_DEL [dm3] 2L_5405858_DEL [dm6]	AA	A	3.000e^-4	0.878	INTRON H15	TF binding site BDTNP1_TFBS_twi
3R	17390139	3R_17390139_SNP [dm3] 3R_21564417_SNP [dm6]	A	C	3.000e^-4	0.878	INTERGENIC
2L	4286909	2L_4286909_SNP [dm3] 2L_4286909_SNP [dm6]	A	T	3.003e^-4	0.878	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3959424	3L_3959424_SNP [dm3] 3L_3959424_SNP [dm6]	A	G	3.019e^-4	0.878	SYNONYMOUS_CODING CG12605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12166860	2L_12166860_SNP [dm3] 2L_12166860_SNP [dm6]	T	C	3.020e^-4	0.878	DOWNSTREAM ZnT33D INTRON CG31760
2R	11298353	2R_11298353_SNP [dm3] 2R_15410848_SNP [dm6]	A	T	3.021e^-4	0.878	INTRON CG43729
2L	18648517	2L_18648517_SNP [dm3] 2L_18648517_SNP [dm6]	T	C	3.025e^-4	0.878	INTRON MESR3
3R	14448514	3R_14448514_SNP [dm3] 3R_18622792_SNP [dm6]	A	T	3.031e^-4	0.878	INTRON qin	TF binding site mE1_TFBS_inv
2R	6113162	2R_6113162_SNP [dm3] 2R_10225657_SNP [dm6]	T	C	3.031e^-4	0.878	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26517524	3R_26517524_SNP [dm3] 3R_30691802_SNP [dm6]	G	A	3.033e^-4	0.878	INTRON Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7944812	3L_7944812_SNP [dm3] 3L_7951712_SNP [dm6]	G	A	3.040e^-4	0.878	DOWNSTREAM exex INTERGENIC
3L	9549373	3L_9549373_SNP [dm3] 3L_9556273_SNP [dm6]	A	C	3.040e^-4	0.878	INTRON CG42673
3R	26517522	3R_26517522_SNP [dm3] 3R_30691800_SNP [dm6]	T	G	3.043e^-4	0.878	INTRON Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26517530	3R_26517530_SNP [dm3] 3R_30691808_SNP [dm6]	A	T	3.043e^-4	0.878	INTRON Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18099570	2L_18099570_SNP [dm3] 2L_18099570_SNP [dm6]	T	C	3.047e^-4	0.878	INTERGENIC
3R	17952791	3R_17952791_SNP [dm3] 3R_22127069_SNP [dm6]	C	T	3.055e^-4	0.878	INTRON CG42390
2R	19087990	2R_19087990_SNP [dm3] 2R_23200467_SNP [dm6]	T	G	3.057e^-4	0.878	INTRON CG34371
3R	18161269	3R_18161269_SNP [dm3] 3R_22335547_SNP [dm6]	G	T	3.059e^-4	0.878	INTRON CG5388
3R	2677705	3R_2677705_SNP [dm3] 3R_6851983_SNP [dm6]	A	G	3.069e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs
3R	2676636	3R_2676636_SNP [dm3] 3R_6850914_SNP [dm6]	G	A	3.076e^-4	0.878	UPSTREAM Scr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	6252588	2R_6252588_SNP [dm3] 2R_10365083_SNP [dm6]	T	G	3.076e^-4	0.878	UTR_5_PRIME CG42732 INTRON CG42732
2R	6252590	2R_6252590_INS [dm3] 2R_10365085_INS [dm6]	T	TGT	3.076e^-4	0.878	UTR_5_PRIME CG42732 INTRON CG42732
2R	6252606	2R_6252606_SNP [dm3] 2R_10365101_SNP [dm6]	G	A	3.076e^-4	0.878	UTR_5_PRIME CG42732 INTRON CG42732
2R	17979900	2R_17979900_SNP [dm3] 2R_22092395_SNP [dm6]	T	C	3.078e^-4	0.878	SYNONYMOUS_CODING CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2687384	3R_2687384_SNP [dm3] 3R_6861662_SNP [dm6]	T	G	3.082e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18055934	2R_18055934_SNP [dm3] 2R_22168429_SNP [dm6]	A	C	3.083e^-4	0.878	INTRON a
2L	5643861	2L_5643861_SNP [dm3] 2L_5643861_SNP [dm6]	A	G	3.090e^-4	0.878	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3567899	2R_3567899_SNP [dm3] 2R_7680394_SNP [dm6]	T	A	3.094e^-4	0.878	INTRON CG1399
X	282653	X_282653_SNP [dm3] X_388620_SNP [dm6]	C	A	3.107e^-4	0.878	INTRON CG32816
2L	13916915	2L_13916915_SNP [dm3] 2L_13916915_SNP [dm6]	T	A	3.107e^-4	0.878	INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13916918	2L_13916918_SNP [dm3] 2L_13916918_SNP [dm6]	T	C	3.107e^-4	0.878	SPLICE_SITE_REGION Ance-3 INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13916921	2L_13916921_SNP [dm3] 2L_13916921_SNP [dm6]	G	T	3.107e^-4	0.878	SPLICE_SITE_REGION Ance-3 INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11864330	X_11864330_SNP [dm3] X_11970297_SNP [dm6]	A	T	3.111e^-4	0.878	INTRON cac
2R	17978024	2R_17978024_SNP [dm3] 2R_22090519_SNP [dm6]	A	C	3.117e^-4	0.878	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163 & 1 other
3L	3082718	3L_3082718_SNP [dm3] 3L_3082718_SNP [dm6]	C	A	3.135e^-4	0.878	INTRON CG11486	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
3R	20031196	3R_20031196_SNP [dm3] 3R_24205474_SNP [dm6]	A	G	3.136e^-4	0.878	INTRON twin
2L	15759687	2L_15759687_SNP [dm3] 2L_15759687_SNP [dm6]	A	G	3.142e^-4	0.878	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16235303	2L_16235303_DEL [dm3] 2L_16235303_DEL [dm6]	TTT	GG	3.147e^-4	0.878	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5237987	2L_5237987_SNP [dm3] 2L_5237987_SNP [dm6]	A	T	3.149e^-4	0.878	UPSTREAM tkv INTRON tkv	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	261742	X_261742_SNP [dm3] X_367709_SNP [dm6]	A	T	3.151e^-4	0.878	DOWNSTREAM yar INTRON CG32816
2L	15556247	2L_15556247_SNP [dm3] 2L_15556247_SNP [dm6]	C	T	3.156e^-4	0.878	INTRON kek3
2L	10870764	2L_10870764_SNP [dm3] 2L_10870764_SNP [dm6]	G	T	3.159e^-4	0.878	UPSTREAM CR45453 DOWNSTREAM CG12517 INTERGENIC
3L	13840621	3L_13840621_SNP [dm3] 3L_13847521_SNP [dm6]	T	C	3.163e^-4	0.878	SYNONYMOUS_CODING Hml
X	3109906	X_3109906_SNP [dm3] X_3215873_SNP [dm6]	C	A	3.164e^-4	0.878	INTRON dnc
3L	7823120	3L_7823120_SNP [dm3] 3L_7830020_SNP [dm6]	C	G	3.173e^-4	0.878	INTRON Pdp1
2R	20031864	2R_20031864_SNP [dm3] 2R_24144341_SNP [dm6]	A	G	3.191e^-4	0.878	INTRON Dat
3L	9672585	3L_9672585_SNP [dm3] 3L_9679485_SNP [dm6]	C	A	3.192e^-4	0.878	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9671787	3L_9671787_SNP [dm3] 3L_9678687_SNP [dm6]	C	A	3.193e^-4	0.878	UPSTREAM CG16717 INTRON fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8712908	2L_8712908_SNP [dm3] 2L_8712908_SNP [dm6]	C	T	3.194e^-4	0.878	SYNONYMOUS_CODING raw
2R	13087316	2R_13087316_SNP [dm3] 2R_17199811_SNP [dm6]	G	A	3.199e^-4	0.878	INTERGENIC
2R	17082950	2R_17082950_SNP [dm3] 2R_21195445_SNP [dm6]	C	A	3.202e^-4	0.878	INTRON Lapsyn
X	14793647	X_14793647_SNP [dm3] X_14899614_SNP [dm6]	T	A	3.209e^-4	0.878	INTRON Flo2
2L	2319300	2L_2319300_SNP [dm3] 2L_2319300_SNP [dm6]	A	C	3.209e^-4	0.878	INTRON CG9967 & 1 other
3L	7426551	3L_7426551_INS [dm3] 3L_7433451_INS [dm6]	T	TGGTTGTGGCAGTAAGAAAT...	3.218e^-4	0.878	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17952857	3R_17952857_SNP [dm3] 3R_22127135_SNP [dm6]	T	A	3.218e^-4	0.878	INTRON CG42390
2L	4177634	2L_4177634_SNP [dm3] 2L_4177634_SNP [dm6]	T	C	3.220e^-4	0.878	INTERGENIC
3R	22653037	3R_22653037_SNP [dm3] 3R_26827315_SNP [dm6]	C	A	3.221e^-4	0.878	INTRON Tl
3R	9601349	3R_9601349_SNP [dm3] 3R_13775627_SNP [dm6]	C	G	3.222e^-4	0.878	SYNONYMOUS_CODING CG9297
2R	15270784	2R_15270784_SNP [dm3] 2R_19383279_SNP [dm6]	A	C	3.231e^-4	0.878	SYNONYMOUS_CODING CG10073
2R	8620691	2R_8620691_SNP [dm3] 2R_12733186_SNP [dm6]	T	A	3.233e^-4	0.878	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8948374	3L_8948374_SNP [dm3] 3L_8955274_SNP [dm6]	C	G	3.235e^-4	0.878	SYNONYMOUS_CODING GNBP3 UPSTREAM orb2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18121710	2L_18121710_SNP [dm3] 2L_18121710_SNP [dm6]	G	T	3.239e^-4	0.878	UPSTREAM CG5758 INTRON CG5758
3L	14428679	3L_14428679_SNP [dm3] 3L_14435579_SNP [dm6]	C	T	3.241e^-4	0.878	INTRON bbg
2R	13266034	2R_13266034_DEL [dm3] 2R_17378529_DEL [dm6]	GG	G	3.264e^-4	0.878	UTR_3_PRIME mbl
X	4573741	X_4573741_SNP [dm3] X_4679708_SNP [dm6]	T	C	3.264e^-4	0.878	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9388589	3L_9388589_SNP [dm3] 3L_9395489_SNP [dm6]	G	T	3.269e^-4	0.878	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14017817	2L_14017817_DEL [dm3] 2L_14017817_DEL [dm6]	ATTTATTGCTGACAGAAAAT...	A	3.271e^-4	0.878	INTRON bgm
X	2604041	X_2604041_SNP [dm3] X_2710008_SNP [dm6]	A	C	3.276e^-4	0.878	INTRON CG2681	TF binding site mE1_TFBS_chinmo
3L	3091155	3L_3091155_SNP [dm3] 3L_3091155_SNP [dm6]	C	T	3.279e^-4	0.878	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	229459	X_229459_SNP [dm3] X_335426_SNP [dm6]	A	G	3.282e^-4	0.878	UPSTREAM CG32816 INTRON CG3777 & 1 other
2L	5405881	2L_5405881_SNP [dm3] 2L_5405881_SNP [dm6]	C	T	3.285e^-4	0.878	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9685844	2L_9685844_SNP [dm3] 2L_9685844_SNP [dm6]	C	A	3.287e^-4	0.878	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8869241	2R_8869241_SNP [dm3] 2R_12981736_SNP [dm6]	C	A	3.289e^-4	0.878	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	2616422	2L_2616422_SNP [dm3] 2L_2616422_SNP [dm6]	G	A	3.293e^-4	0.878	INTERGENIC
2R	10368198	2R_10368198_SNP [dm3] 2R_14480693_SNP [dm6]	C	T	3.308e^-4	0.878	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	19352738	X_19352738_SNP [dm3] X_19458705_SNP [dm6]	A	C	3.312e^-4	0.878	INTRON kek5	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	10118020	2L_10118020_SNP [dm3] 2L_10118020_SNP [dm6]	G	T	3.321e^-4	0.878	NON_SYNONYMOUS_CODING CG34109 INTRON CG44153
3L	10921270	3L_10921270_SNP [dm3] 3L_10928170_SNP [dm6]	C	A	3.326e^-4	0.878	INTERGENIC
2R	12336056	2R_12336056_SNP [dm3] 2R_16448551_SNP [dm6]	G	C	3.331e^-4	0.878	INTERGENIC
3R	26729728	3R_26729728_SNP [dm3] 3R_30904006_SNP [dm6]	T	G	3.332e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22245491	3R_22245491_SNP [dm3] 3R_26419769_SNP [dm6]	A	T	3.349e^-4	0.878	INTERGENIC
2L	13125451	2L_13125451_SNP [dm3] 2L_13125451_SNP [dm6]	C	G	3.350e^-4	0.878	INTERGENIC
2L	4300461	2L_4300461_SNP [dm3] 2L_4300461_SNP [dm6]	A	G	3.351e^-4	0.878	INTRON tutl
2L	2238844	2L_2238844_SNP [dm3] 2L_2238844_SNP [dm6]	G	A	3.351e^-4	0.878	SYNONYMOUS_CODING Tengl2 UPSTREAM Tengl3 DOWNSTREAM Tengl1
2R	6113493	2R_6113493_SNP [dm3] 2R_10225988_SNP [dm6]	A	C	3.370e^-4	0.878	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18156939	3R_18156939_SNP [dm3] 3R_22331217_SNP [dm6]	G	A	3.370e^-4	0.878	SYNONYMOUS_CODING CG33721 UPSTREAM CG13862 DOWNSTREAM CG7080
3R	14053831	3R_14053831_SNP [dm3] 3R_18228109_SNP [dm6]	T	C	3.381e^-4	0.878	SYNONYMOUS_CODING Mdh2
3R	17095443	3R_17095443_SNP [dm3] 3R_21269721_SNP [dm6]	A	G	3.386e^-4	0.878	UPSTREAM Rab1 & 1 other INTRON AP-2sigma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16521713	3R_16521713_SNP [dm3] 3R_20695991_SNP [dm6]	A	G	3.398e^-4	0.878	INTRON Oamb
X	46842	X_46842_SNP [dm3] X_150455_SNP [dm6]	A	G	3.398e^-4	0.878	INTRON tyn
X	18640160	X_18640160_SNP [dm3] X_18746127_SNP [dm6]	C	A	3.399e^-4	0.878	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
2R	3595864	2R_3595864_SNP [dm3] 2R_7708359_SNP [dm6]	C	G	3.402e^-4	0.878	INTRON tor
2L	18739465	2L_18739465_SNP [dm3] 2L_18739465_SNP [dm6]	G	A	3.403e^-4	0.878	UTR_3_PRIME CG42752 UPSTREAM CG15167
3L	9153159	3L_9153159_SNP [dm3] 3L_9160059_SNP [dm6]	T	A	3.404e^-4	0.878	INTRON Rdl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6027120	3L_6027120_SNP [dm3] 3L_6034020_SNP [dm6]	G	A	3.412e^-4	0.878	SYNONYMOUS_CODING CG10477
2L	9116855	2L_9116855_SNP [dm3] 2L_9116855_SNP [dm6]	C	T	3.414e^-4	0.878	INTERGENIC
3R	5965530	3R_5965530_SNP [dm3] 3R_10139808_SNP [dm6]	A	G	3.417e^-4	0.878	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
2L	7872977	2L_7872977_SNP [dm3] 2L_7872977_SNP [dm6]	G	T	3.431e^-4	0.878	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
3L	390335	3L_390335_SNP [dm3] 3L_390335_SNP [dm6]	C	T	3.436e^-4	0.878	INTRON trh
3R	18154548	3R_18154548_SNP [dm3] 3R_22328826_SNP [dm6]	G	T	3.436e^-4	0.878	UPSTREAM CG7080 INTERGENIC
X	17974894	X_17974894_SNP [dm3] X_18080861_SNP [dm6]	A	C	3.439e^-4	0.878	SYNONYMOUS_CODING CG7536	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5972553	3R_5972553_SNP [dm3] 3R_10146831_SNP [dm6]	C	T	3.441e^-4	0.878	INTRON Invadolysin
3R	2669173	3R_2669173_SNP [dm3] 3R_6843451_SNP [dm6]	G	C	3.444e^-4	0.878	INTRON Scr	regulatory region FlyBase REDfly_CRMs
3L	21491218	3L_21491218_SNP [dm3] 3L_21498118_SNP [dm6]	T	A	3.444e^-4	0.878	UTR_3_PRIME Glg1 UPSTREAM Hr78 INTRON CR43933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19202390	2L_19202390_SNP [dm3] 2L_19202390_SNP [dm6]	G	A	3.447e^-4	0.878	INTRON drl	regulatory region REDfly_CRMs
X	16942556	X_16942556_SNP [dm3] X_17048523_SNP [dm6]	T	C	3.456e^-4	0.878	INTRON CG45002
3R	2683804	3R_2683804_SNP [dm3] 3R_6858082_SNP [dm6]	G	A	3.464e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2723983	3R_2723983_SNP [dm3] 3R_6898261_SNP [dm6]	C	A	3.474e^-4	0.878	UTR_3_PRIME Antp
3R	9193896	3R_9193896_SNP [dm3] 3R_13368174_SNP [dm6]	T	A	3.475e^-4	0.878	INTRON Dic1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3569803	2R_3569803_SNP [dm3] 2R_7682298_SNP [dm6]	T	G	3.476e^-4	0.878	UPSTREAM CG1399 INTRON CG1399
3R	18855714	3R_18855714_SNP [dm3] 3R_23029992_SNP [dm6]	G	A	3.478e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs
3R	12302158	3R_12302158_SNP [dm3] 3R_16476436_SNP [dm6]	C	G	3.478e^-4	0.878	UPSTREAM Gyc-89Db DOWNSTREAM Gyc-89Da INTERGENIC
3L	15555494	3L_15555494_SNP [dm3] 3L_15562394_SNP [dm6]	A	G	3.481e^-4	0.878	SYNONYMOUS_CODING CG7739	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	2688794	3R_2688794_SNP [dm3] 3R_6863072_SNP [dm6]	C	A	3.483e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	263487	X_263487_SNP [dm3] X_369454_SNP [dm6]	A	C	3.483e^-4	0.878	UPSTREAM ac INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	6111671	2R_6111671_SNP [dm3] 2R_10224166_SNP [dm6]	A	G	3.486e^-4	0.878	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
3L	4401221	3L_4401221_SNP [dm3] 3L_4401221_SNP [dm6]	T	A	3.490e^-4	0.878	INTRON slow	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18523309	3R_18523309_SNP [dm3] 3R_22697587_SNP [dm6]	T	A	3.500e^-4	0.878	UPSTREAM Cyp6d4 INTRON cd
2R	11468498	2R_11468498_SNP [dm3] 2R_15580993_SNP [dm6]	G	T	3.530e^-4	0.878	INTERGENIC
3L	3140774	3L_3140774_DEL [dm3] 3L_3140774_DEL [dm6]	AAGTA	A	3.530e^-4	0.878	UPSTREAM CG11537 INTRON CG11537
2L	720180	2L_720180_SNP [dm3] 2L_720180_SNP [dm6]	C	G	3.533e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9204718	2L_9204718_SNP [dm3] 2L_9204718_SNP [dm6]	C	T	3.534e^-4	0.878	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	276896	X_276896_SNP [dm3] X_382863_SNP [dm6]	T	A	3.539e^-4	0.878	INTRON CG32816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11106089	X_11106089_SNP [dm3] X_11212056_SNP [dm6]	G	A	3.543e^-4	0.878	INTERGENIC
3R	15317929	3R_15317929_SNP [dm3] 3R_19492207_SNP [dm6]	G	T	3.557e^-4	0.878	INTRON Dys
3R	14530156	3R_14530156_SNP [dm3] 3R_18704434_SNP [dm6]	G	A	3.559e^-4	0.878	INTERGENIC
X	6399952	X_6399952_SNP [dm3] X_6505919_SNP [dm6]	G	A	3.560e^-4	0.878	INTRON CG42340
2L	7690370	2L_7690370_SNP [dm3] 2L_7690370_SNP [dm6]	G	T	3.564e^-4	0.878	SYNONYMOUS_CODING CG18585 DOWNSTREAM Myo28B1 & 1 other
2L	2238710	2L_2238710_SNP [dm3] 2L_2238710_SNP [dm6]	T	C	3.568e^-4	0.878	NON_SYNONYMOUS_CODING Tengl2 UPSTREAM Tengl3 DOWNSTREAM Tengl1
2R	17782657	2R_17782657_SNP [dm3] 2R_21895152_SNP [dm6]	C	T	3.570e^-4	0.878	INTRON Fili
3R	14903302	3R_14903302_SNP [dm3] 3R_19077580_SNP [dm6]	G	A	3.588e^-4	0.878	INTRON cdi
3L	9671597	3L_9671597_SNP [dm3] 3L_9678497_SNP [dm6]	G	A	3.591e^-4	0.878	UPSTREAM CG16717 INTRON fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9545533	3L_9545533_SNP [dm3] 3L_9552433_SNP [dm6]	T	A	3.597e^-4	0.878	INTRON CG42673
2L	11785524	2L_11785524_SNP [dm3] 2L_11785524_SNP [dm6]	C	T	3.603e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14909319	3R_14909319_SNP [dm3] 3R_19083597_SNP [dm6]	A	C	3.604e^-4	0.878	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21490878	3L_21490878_SNP [dm3] 3L_21497778_SNP [dm6]	T	G	3.605e^-4	0.878	UTR_3_PRIME Glg1 UPSTREAM Hr78 INTRON CR43933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8240583	2L_8240583_SNP [dm3] 2L_8240583_SNP [dm6]	T	A	3.612e^-4	0.878	NON_SYNONYMOUS_CODING Spn28F UPSTREAM Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2672670	3R_2672670_SNP [dm3] 3R_6846948_SNP [dm6]	A	G	3.616e^-4	0.878	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5379071	2L_5379071_SNP [dm3] 2L_5379071_SNP [dm6]	G	T	3.626e^-4	0.878	DOWNSTREAM CR42850 INTERGENIC
3L	8080911	3L_8080911_SNP [dm3] 3L_8087811_SNP [dm6]	G	T	3.627e^-4	0.878	UTR_3_PRIME CG7565 INTRON Ect4
2L	10996675	2L_10996675_SNP [dm3] 2L_10996675_SNP [dm6]	T	G	3.629e^-4	0.878	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	12071314	3L_12071314_SNP [dm3] 3L_12078214_SNP [dm6]	A	G	3.651e^-4	0.878	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4892962	2L_4892962_SNP [dm3] 2L_4892962_SNP [dm6]	T	A	3.652e^-4	0.878	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	3024185	3L_3024185_SNP [dm3] 3L_3024185_SNP [dm6]	A	T	3.653e^-4	0.878	UTR_3_PRIME aly DOWNSTREAM aly
3L	14404554	3L_14404554_SNP [dm3] 3L_14411454_SNP [dm6]	T	A	3.662e^-4	0.878	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18640138	X_18640138_SNP [dm3] X_18746105_SNP [dm6]	G	A	3.664e^-4	0.878	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
2L	3877960	2L_3877960_SNP [dm3] 2L_3877960_SNP [dm6]	G	A	3.664e^-4	0.878	INTRON capu
2L	1244163	2L_1244163_SNP [dm3] 2L_1244163_SNP [dm6]	G	T	3.669e^-4	0.878	INTERGENIC
3L	8418394	3L_8418394_SNP [dm3] 3L_8425294_SNP [dm6]	C	T	3.674e^-4	0.878	UTR_5_PRIME Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16307980	3R_16307980_DEL [dm3] 3R_20482258_DEL [dm6]	GCCCAATTC	G	3.675e^-4	0.878	INTRON Gfrl
3L	18242690	3L_18242690_SNP [dm3] 3L_18249590_SNP [dm6]	T	G	3.680e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20195118	3R_20195118_SNP [dm3] 3R_24369396_SNP [dm6]	G	C	3.687e^-4	0.878	UTR_3_PRIME CG33341 UPSTREAM CG13614
2R	18185177	2R_18185177_SNP [dm3] 2R_22297672_SNP [dm6]	G	T	3.689e^-4	0.878	DOWNSTREAM CG5819 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	265239	X_265239_SNP [dm3] X_371206_SNP [dm6]	G	A	3.692e^-4	0.878	DOWNSTREAM ac INTRON CG32816	regulatory region REDfly_CRMs
3L	14124199	3L_14124199_SNP [dm3] 3L_14131099_SNP [dm6]	T	A	3.693e^-4	0.878	UTR_5_PRIME Sox21b INTRON Sox21b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16451648	2R_16451648_SNP [dm3] 2R_20564143_SNP [dm6]	A	G	3.701e^-4	0.878	SYNONYMOUS_CODING qsm
2R	17959491	2R_17959491_SNP [dm3] 2R_22071986_SNP [dm6]	T	C	3.715e^-4	0.878	SYNONYMOUS_CODING CG11474 UPSTREAM CG11475	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12198659	2L_12198659_SNP [dm3] 2L_12198659_SNP [dm6]	C	T	3.719e^-4	0.878	INTRON aret
2R	13366286	2R_13366286_SNP [dm3] 2R_17478781_SNP [dm6]	T	C	3.722e^-4	0.878	UTR_3_PRIME CG43110 UPSTREAM veil INTRON veil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	2546873	3R_2546873_SNP [dm3] 3R_6721151_SNP [dm6]	A	C	3.732e^-4	0.878	INTRON pb	regulatory region REDfly_CRMs
3L	9671812	3L_9671812_SNP [dm3] 3L_9678712_SNP [dm6]	T	A	3.733e^-4	0.878	UPSTREAM CG16717 INTRON fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19368303	2R_19368303_SNP [dm3] 2R_23480780_SNP [dm6]	C	T	3.744e^-4	0.878	INTRON CG43795
3L	11938593	3L_11938593_SNP [dm3] 3L_11945493_SNP [dm6]	G	A	3.748e^-4	0.878	UPSTREAM CG5883 DOWNSTREAM mir-285 INTERGENIC
3R	2636749	3R_2636749_SNP [dm3] 3R_6811027_SNP [dm6]	G	A	3.755e^-4	0.878	INTRON CR42651	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	18849538	X_18849538_SNP [dm3] X_18955505_SNP [dm6]	A	G	3.762e^-4	0.878	INTRON CG43759
3R	2680367	3R_2680367_SNP [dm3] 3R_6854645_SNP [dm6]	T	A	3.763e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	2680426	3R_2680426_SNP [dm3] 3R_6854704_SNP [dm6]	T	C	3.767e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	1665208	2L_1665208_SNP [dm3] 2L_1665208_SNP [dm6]	C	G	3.767e^-4	0.878	INTRON chinmo
3R	2738189	3R_2738189_SNP [dm3] 3R_6912467_SNP [dm6]	C	T	3.778e^-4	0.878	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	4573788	X_4573788_SNP [dm3] X_4679755_SNP [dm6]	A	G	3.780e^-4	0.878	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18159373	3R_18159373_SNP [dm3] 3R_22333651_SNP [dm6]	T	C	3.791e^-4	0.878	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG5388
2R	12197239	2R_12197239_SNP [dm3] 2R_16309734_SNP [dm6]	C	A	3.793e^-4	0.878	SYNONYMOUS_CODING Nox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2R	1583878	2R_1583878_SNP [dm3] 2R_5696373_SNP [dm6]	C	T	3.796e^-4	0.878	INTERGENIC	transposable element FlyBase
2R	15479116	2R_15479116_SNP [dm3] 2R_19591611_SNP [dm6]	G	A	3.798e^-4	0.878	INTRON sm
3L	18363406	3L_18363406_SNP [dm3] 3L_18370306_SNP [dm6]	T	G	3.799e^-4	0.878	INTERGENIC
2L	22008987	2L_22008987_DEL [dm3] 2L_22008987_DEL [dm6]	GT	C	3.799e^-4	0.878	INTERGENIC
3L	8404570	3L_8404570_SNP [dm3] 3L_8411470_SNP [dm6]	C	T	3.810e^-4	0.878	SYNONYMOUS_CODING Oseg1 UPSTREAM Exo70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	12454082	3R_12454082_SNP [dm3] 3R_16628360_SNP [dm6]	C	G	3.810e^-4	0.878	INTRON Fas1
3R	10534669	3R_10534669_SNP [dm3] 3R_14708947_SNP [dm6]	G	C	3.811e^-4	0.878	INTRON kibra
X	8761488	X_8761488_SNP [dm3] X_8867455_SNP [dm6]	T	A	3.823e^-4	0.878	INTRON CG12075
3R	9440997	3R_9440997_SNP [dm3] 3R_13615275_SNP [dm6]	A	T	3.827e^-4	0.878	UPSTREAM CG9269 INTERGENIC
X	20946336	X_20946336_SNP [dm3] X_21075309_SNP [dm6]	T	A	3.837e^-4	0.878	INTRON bves
X	252835	X_252835_SNP [dm3] X_358802_SNP [dm6]	T	A	3.841e^-4	0.878	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
X	4705542	X_4705542_SNP [dm3] X_4811509_SNP [dm6]	A	T	3.845e^-4	0.878	INTERGENIC
3R	26756165	3R_26756165_SNP [dm3] 3R_30930443_SNP [dm6]	C	G	3.848e^-4	0.878	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
3L	12501186	3L_12501186_SNP [dm3] 3L_12508086_SNP [dm6]	T	G	3.854e^-4	0.878	UTR_3_PRIME sti UPSTREAM CG10654
2L	12181506	2L_12181506_SNP [dm3] 2L_12181506_SNP [dm6]	T	A	3.856e^-4	0.878	INTRON aret
3R	23539368	3R_23539368_SNP [dm3] 3R_27713646_SNP [dm6]	T	G	3.861e^-4	0.878	INTERGENIC
2L	9248176	2L_9248176_SNP [dm3] 2L_9248176_SNP [dm6]	C	A	3.865e^-4	0.878	UTR_3_PRIME tai DOWNSTREAM tai
2R	14778904	2R_14778904_SNP [dm3] 2R_18891399_SNP [dm6]	T	A	3.871e^-4	0.878	INTRON sano
3L	15794810	3L_15794810_SNP [dm3] 3L_15801710_SNP [dm6]	A	G	3.878e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	9049484	3L_9049484_SNP [dm3] 3L_9056384_SNP [dm6]	A	C	3.881e^-4	0.878	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14763215	X_14763215_INS [dm3] X_14869182_INS [dm6]	G	GCT	3.889e^-4	0.878	INTRON Flo2 & 1 other
2L	8240582	2L_8240582_SNP [dm3] 2L_8240582_SNP [dm6]	A	T	3.893e^-4	0.878	STOP_GAINED Spn28F UPSTREAM Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25555999	3R_25555999_SNP [dm3] 3R_29730277_SNP [dm6]	C	A	3.903e^-4	0.878	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	5580162	X_5580162_SNP [dm3] X_5686129_SNP [dm6]	T	A	3.910e^-4	0.878	INTRON CG3160
2L	7438536	2L_7438536_SNP [dm3] 2L_7438536_SNP [dm6]	T	C	3.915e^-4	0.878	INTRON CG5973	TF binding site BDTNP1_TFBS_dl
X	250183	X_250183_SNP [dm3] X_356150_SNP [dm6]	A	G	3.916e^-4	0.878	UPSTREAM y INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	15791594	3L_15791594_SNP [dm3] 3L_15798494_SNP [dm6]	A	G	3.923e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13747232	3R_13747232_SNP [dm3] 3R_17921510_SNP [dm6]	G	T	3.923e^-4	0.878	INTRON cpo
2R	11663381	2R_11663381_SNP [dm3] 2R_15775876_SNP [dm6]	T	A	3.932e^-4	0.878	START_GAINED Zasp52 UTR_5_PRIME Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2L	9378834	2L_9378834_SNP [dm3] 2L_9378834_SNP [dm6]	A	G	3.933e^-4	0.878	INTRON Shawl
3L	9791625	3L_9791625_SNP [dm3] 3L_9798525_SNP [dm6]	T	C	3.937e^-4	0.878	NON_SYNONYMOUS_CODING Ilp1 UPSTREAM Zasp67 & 1 other
3R	2669170	3R_2669170_SNP [dm3] 3R_6843448_SNP [dm6]	A	G	3.948e^-4	0.878	INTRON Scr	regulatory region FlyBase REDfly_CRMs
2L	13803101	2L_13803101_SNP [dm3] 2L_13803101_SNP [dm6]	C	A	3.951e^-4	0.878	UPSTREAM CAH1 INTERGENIC
3L	3568338	3L_3568338_SNP [dm3] 3L_3568338_SNP [dm6]	T	G	3.957e^-4	0.878	INTRON Eip63E	TF binding site mE1_TFBS_bab1
3L	8404909	3L_8404909_SNP [dm3] 3L_8411809_SNP [dm6]	G	A	3.958e^-4	0.878	UTR_5_PRIME Oseg1 UPSTREAM Exo70 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA
2L	1469954	2L_1469954_SNP [dm3] 2L_1469954_SNP [dm6]	A	G	3.961e^-4	0.878	INTERGENIC
3L	8823586	3L_8823586_SNP [dm3] 3L_8830486_SNP [dm6]	A	G	3.965e^-4	0.878	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9564927	2R_9564927_SNP [dm3] 2R_13677422_SNP [dm6]	T	C	3.969e^-4	0.878	INTRON fas
3R	18149640	3R_18149640_INS [dm3] 3R_22323918_INS [dm6]	G	CC	3.985e^-4	0.878	UTR_5_PRIME CG34377
3R	11923035	3R_11923035_SNP [dm3] 3R_16097313_SNP [dm6]	A	G	3.989e^-4	0.878	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14809455	2R_14809455_SNP [dm3] 2R_18921950_SNP [dm6]	G	A	3.992e^-4	0.878	INTRON sano
2R	8869253	2R_8869253_SNP [dm3] 2R_12981748_SNP [dm6]	C	A	3.992e^-4	0.878	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	8869254	2R_8869254_SNP [dm3] 2R_12981749_SNP [dm6]	T	G	3.992e^-4	0.878	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	14438698	3R_14438698_SNP [dm3] 3R_18612976_SNP [dm6]	C	A	3.996e^-4	0.878	INTRON qin & 1 other
3L	7851370	3L_7851370_SNP [dm3] 3L_7858270_SNP [dm6]	G	A	3.998e^-4	0.878	INTRON Pdp1	TF binding site mE1_TFBS_HSA
2L	1238078	2L_1238078_SNP [dm3] 2L_1238078_SNP [dm6]	T	C	3.999e^-4	0.878	INTERGENIC
3R	9440963	3R_9440963_DEL [dm3] 3R_13615241_DEL [dm6]	AATGGATAATTGCTGTAATG...	A	4.012e^-4	0.878	UPSTREAM CG9269 INTERGENIC
3R	9440986	3R_9440986_DEL [dm3] 3R_13615264_DEL [dm6]	ATGCTTGG	A	4.012e^-4	0.878	UPSTREAM CG9269 INTERGENIC
2R	8540893	2R_8540893_SNP [dm3] 2R_12653388_SNP [dm6]	A	G	4.030e^-4	0.878	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8778
3L	17665943	3L_17665943_SNP [dm3] 3L_17672843_SNP [dm6]	A	T	4.034e^-4	0.878	INTRON CG34251
2L	5449889	2L_5449889_SNP [dm3] 2L_5449889_SNP [dm6]	A	G	4.046e^-4	0.878	INTERGENIC
2L	2619509	2L_2619509_DEL [dm3] 2L_2619509_DEL [dm6]	GTTTG	G	4.051e^-4	0.878	UPSTREAM CG43403 INTERGENIC
3L	9181776	3L_9181776_SNP [dm3] 3L_9188676_SNP [dm6]	T	A	4.062e^-4	0.878	INTERGENIC
3L	5217214	3L_5217214_SNP [dm3] 3L_5224114_SNP [dm6]	G	C	4.067e^-4	0.878	INTRON shep
3R	17952854	3R_17952854_SNP [dm3] 3R_22127132_SNP [dm6]	G	T	4.069e^-4	0.878	INTRON CG42390
3L	4148211	3L_4148211_SNP [dm3] 3L_4148211_SNP [dm6]	G	A	4.074e^-4	0.878	UPSTREAM CG1299 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17952842	3R_17952842_INS [dm3] 3R_22127120_INS [dm6]	A	AATACTT	4.082e^-4	0.878	INTRON CG42390
X	245824	X_245824_SNP [dm3] X_351791_SNP [dm6]	A	G	4.086e^-4	0.878	DOWNSTREAM CG43181 INTRON CG32816	transposable element FlyBase
3L	11022982	3L_11022982_SNP [dm3] 3L_11029882_SNP [dm6]	G	A	4.091e^-4	0.878	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9440995	3R_9440995_SNP [dm3] 3R_13615273_SNP [dm6]	A	C	4.099e^-4	0.878	UPSTREAM CG9269 INTERGENIC
2L	16493387	2L_16493387_SNP [dm3] 2L_16493387_SNP [dm6]	T	C	4.108e^-4	0.878	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	2428261	3R_2428261_SNP [dm3] 3R_6602539_SNP [dm6]	T	C	4.111e^-4	0.878	DOWNSTREAM CG31482 INTERGENIC	transposable element FlyBase
3L	5584602	3L_5584602_SNP [dm3] 3L_5591502_SNP [dm6]	T	G	4.122e^-4	0.878	SYNONYMOUS_CODING spo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5876026	X_5876026_SNP [dm3] X_5981993_SNP [dm6]	C	A	4.123e^-4	0.878	INTRON Grip	TF binding site BDTNP1_TFBS_twi
2R	8869248	2R_8869248_SNP [dm3] 2R_12981743_SNP [dm6]	C	T	4.124e^-4	0.878	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	10580703	3L_10580703_SNP [dm3] 3L_10587603_SNP [dm6]	C	T	4.124e^-4	0.878	INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	15755931	2L_15755931_SNP [dm3] 2L_15755931_SNP [dm6]	C	A	4.127e^-4	0.878	DOWNSTREAM Gli & 1 other INTERGENIC
3L	8404773	3L_8404773_SNP [dm3] 3L_8411673_SNP [dm6]	A	G	4.135e^-4	0.878	UTR_5_PRIME Oseg1 UPSTREAM Exo70 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA
2L	16388255	2L_16388255_SNP [dm3] 2L_16388255_SNP [dm6]	G	A	4.138e^-4	0.878	INTERGENIC
3R	15634363	3R_15634363_SNP [dm3] 3R_19808641_SNP [dm6]	G	A	4.141e^-4	0.878	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6460342	3R_6460342_SNP [dm3] 3R_10634620_SNP [dm6]	C	A	4.142e^-4	0.878	INTRON hth	TF binding site mE1_TFBS_chinmo
2R	15270817	2R_15270817_SNP [dm3] 2R_19383312_SNP [dm6]	G	A	4.145e^-4	0.878	SYNONYMOUS_CODING CG10073
2R	8620480	2R_8620480_SNP [dm3] 2R_12732975_SNP [dm6]	A	C	4.145e^-4	0.878	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14993052	3R_14993052_SNP [dm3] 3R_19167330_SNP [dm6]	C	T	4.157e^-4	0.878	INTRON sqz
2R	3572203	2R_3572203_INS [dm3] 2R_7684698_INS [dm6]	T	TT	4.164e^-4	0.878	INTRON CG1399
3L	15385121	3L_15385121_SNP [dm3] 3L_15392021_SNP [dm6]	C	T	4.164e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20393956	3R_20393956_SNP [dm3] 3R_24568234_SNP [dm6]	C	T	4.166e^-4	0.878	INTRON CG13624	TF binding site BDTNP1_TFBS_da
2L	9776684	2L_9776684_INS [dm3] 2L_9776684_INS [dm6]	T	TGT	4.170e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	22604195	3R_22604195_SNP [dm3] 3R_26778473_SNP [dm6]	C	T	4.181e^-4	0.878	INTERGENIC
2L	8810196	2L_8810196_SNP [dm3] 2L_8810196_SNP [dm6]	G	T	4.182e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4716638	3L_4716638_SNP [dm3] 3L_4716638_SNP [dm6]	G	T	4.183e^-4	0.878	INTRON RhoGEF64C
X	4273700	X_4273700_SNP [dm3] X_4379667_SNP [dm6]	T	A	4.188e^-4	0.878	INTERGENIC
3R	3298018	3R_3298018_SNP [dm3] 3R_7472296_SNP [dm6]	G	A	4.196e^-4	0.878	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16711835	3R_16711835_SNP [dm3] 3R_20886113_SNP [dm6]	G	C	4.202e^-4	0.878	INTERGENIC
2L	9528724	2L_9528724_SNP [dm3] 2L_9528724_SNP [dm6]	C	T	4.203e^-4	0.878	NON_SYNONYMOUS_CODING CG31883 INTRON Oatp30B
2L	16461542	2L_16461542_SNP [dm3] 2L_16461542_SNP [dm6]	A	T	4.205e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
X	5876030	X_5876030_SNP [dm3] X_5981997_SNP [dm6]	T	A	4.205e^-4	0.878	INTRON Grip	TF binding site BDTNP1_TFBS_twi
3R	16313022	3R_16313022_SNP [dm3] 3R_20487300_SNP [dm6]	T	A	4.208e^-4	0.878	UPSTREAM CR44401 INTERGENIC
3R	17390237	3R_17390237_SNP [dm3] 3R_21564515_SNP [dm6]	G	A	4.216e^-4	0.878	INTERGENIC
2L	10873586	2L_10873586_SNP [dm3] 2L_10873586_SNP [dm6]	T	C	4.216e^-4	0.878	INTERGENIC
2L	15755843	2L_15755843_DEL [dm3] 2L_15755843_DEL [dm6]	AA	A	4.232e^-4	0.878	UTR_3_PRIME l_2_35Df DOWNSTREAM Gli
2L	18113291	2L_18113291_SNP [dm3] 2L_18113291_SNP [dm6]	A	T	4.242e^-4	0.878	UPSTREAM CG44476 INTERGENIC
3R	18149162	3R_18149162_SNP [dm3] 3R_22323440_SNP [dm6]	G	C	4.246e^-4	0.878	INTRON CG34377
2L	20631117	2L_20631117_SNP [dm3] 2L_20631117_SNP [dm6]	C	T	4.248e^-4	0.878	INTERGENIC
3L	10690251	3L_10690251_SNP [dm3] 3L_10697151_SNP [dm6]	T	A	4.254e^-4	0.878	UPSTREAM NijA INTERGENIC
X	12035459	X_12035459_SNP [dm3] X_12141426_SNP [dm6]	G	A	4.255e^-4	0.878	INTRON Ten-a
2L	21855229	2L_21855229_SNP [dm3] 2L_21855229_SNP [dm6]	G	C	4.261e^-4	0.878	EXON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12677821	2R_12677821_SNP [dm3] 2R_16790316_SNP [dm6]	T	C	4.278e^-4	0.878	INTRON CG5522
3L	18829874	3L_18829874_SNP [dm3] 3L_18836774_SNP [dm6]	C	T	4.278e^-4	0.878	INTRON Indy	TF binding site mE1_TFBS_zfh1
3R	9440998	3R_9440998_SNP [dm3] 3R_13615276_SNP [dm6]	C	T	4.279e^-4	0.878	UPSTREAM CG9269 INTERGENIC
2R	6119556	2R_6119556_SNP [dm3] 2R_10232051_SNP [dm6]	T	C	4.286e^-4	0.878	NON_SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	2462416	2L_2462416_SNP [dm3] 2L_2462416_SNP [dm6]	T	C	4.287e^-4	0.878	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10285893	3L_10285893_INS [dm3] 3L_10292793_INS [dm6]	T	TTAT	4.288e^-4	0.878	INTERGENIC
3L	12315688	3L_12315688_SNP [dm3] 3L_12322588_SNP [dm6]	G	A	4.289e^-4	0.878	INTERGENIC
3L	19409225	3L_19409225_SNP [dm3] 3L_19416125_SNP [dm6]	T	C	4.294e^-4	0.878	INTERGENIC
2R	13217738	2R_13217738_SNP [dm3] 2R_17330233_SNP [dm6]	C	T	4.299e^-4	0.878	INTRON mbl
3L	9168349	3L_9168349_SNP [dm3] 3L_9175249_SNP [dm6]	G	T	4.304e^-4	0.878	INTRON Rdl
3R	15146438	3R_15146438_SNP [dm3] 3R_19320716_SNP [dm6]	C	A	4.306e^-4	0.878	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11048241	2R_11048241_DEL [dm3] 2R_15160736_DEL [dm6]	GTTACTAGATATTCG...	G	4.306e^-4	0.878	INTRON igl
3L	12648871	3L_12648871_INS [dm3] 3L_12655771_INS [dm6]	A	AG	4.307e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7918529	X_7918529_SNP [dm3] X_8024496_SNP [dm6]	G	A	4.311e^-4	0.878	INTRON Tbh
2R	6113492	2R_6113492_SNP [dm3] 2R_10225987_SNP [dm6]	T	A	4.317e^-4	0.878	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10743413	3R_10743413_SNP [dm3] 3R_14917691_SNP [dm6]	A	T	4.324e^-4	0.878	UPSTREAM Sdr INTERGENIC	TF binding site mE1_TFBS_inv
3R	23505408	3R_23505408_SNP [dm3] 3R_27679686_SNP [dm6]	C	T	4.324e^-4	0.878	SYNONYMOUS_CODING CG12883 DOWNSTREAM CG5590 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	12610925	3L_12610925_SNP [dm3] 3L_12617825_SNP [dm6]	A	T	4.331e^-4	0.878	INTRON caup
3R	24475824	3R_24475824_SNP [dm3] 3R_28650102_SNP [dm6]	G	C	4.344e^-4	0.878	UTR_3_PRIME CG31050
2R	19120909	2R_19120909_SNP [dm3] 2R_23233386_SNP [dm6]	T	C	4.364e^-4	0.878	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16307019	3R_16307019_SNP [dm3] 3R_20481297_SNP [dm6]	A	G	4.375e^-4	0.878	UTR_5_PRIME Gfrl INTRON Gfrl
3R	2310170	3R_2310170_SNP [dm3] 3R_6484448_SNP [dm6]	C	A	4.377e^-4	0.878	INTRON CG15186
2L	14705076	2L_14705076_SNP [dm3] 2L_14705076_SNP [dm6]	G	C	4.412e^-4	0.878	INTERGENIC
2R	3569794	2R_3569794_SNP [dm3] 2R_7682289_SNP [dm6]	A	G	4.417e^-4	0.878	UPSTREAM CG1399 INTRON CG1399
2R	6430688	2R_6430688_SNP [dm3] 2R_10543183_SNP [dm6]	G	A	4.424e^-4	0.878	UTR_5_PRIME lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4856634	2R_4856634_SNP [dm3] 2R_8969129_SNP [dm6]	T	G	4.426e^-4	0.878	UPSTREAM CG8216 DOWNSTREAM CG8213 INTERGENIC
3L	16811931	3L_16811931_SNP [dm3] 3L_16818831_SNP [dm6]	G	A	4.434e^-4	0.878	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23536632	3R_23536632_SNP [dm3] 3R_27710910_SNP [dm6]	G	A	4.440e^-4	0.878	DOWNSTREAM CG12877 INTERGENIC
3R	23536656	3R_23536656_SNP [dm3] 3R_27710934_SNP [dm6]	C	T	4.440e^-4	0.878	DOWNSTREAM CG12877 INTERGENIC
3R	14750117	3R_14750117_SNP [dm3] 3R_18924395_SNP [dm6]	A	C	4.440e^-4	0.878	INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14438672	3R_14438672_SNP [dm3] 3R_18612950_SNP [dm6]	G	A	4.441e^-4	0.878	INTRON qin & 1 other
3R	5007045	3R_5007045_SNP [dm3] 3R_9181323_SNP [dm6]	A	T	4.442e^-4	0.878	INTRON pum
3R	2742352	3R_2742352_SNP [dm3] 3R_6916630_SNP [dm6]	C	T	4.444e^-4	0.878	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6422752	3R_6422752_SNP [dm3] 3R_10597030_SNP [dm6]	C	G	4.445e^-4	0.878	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19091870	2R_19091870_SNP [dm3] 2R_23204347_SNP [dm6]	G	T	4.448e^-4	0.878	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	19091871	2R_19091871_SNP [dm3] 2R_23204348_SNP [dm6]	C	A	4.448e^-4	0.878	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	8615185	2L_8615185_SNP [dm3] 2L_8615185_SNP [dm6]	T	A	4.458e^-4	0.878	INTRON Sema-1a
3L	9672529	3L_9672529_SNP [dm3] 3L_9679429_SNP [dm6]	A	G	4.461e^-4	0.878	UTR_5_PRIME CG16717 UPSTREAM fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2530988	3L_2530988_SNP [dm3] 3L_2530988_SNP [dm6]	A	T	4.466e^-4	0.878	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16392294	2R_16392294_SNP [dm3] 2R_20504789_SNP [dm6]	G	T	4.471e^-4	0.878	UTR_3_PRIME Obp57b UPSTREAM Obp57a DOWNSTREAM Obp57c	regulatory region REDfly_CRMs
3L	2978231	3L_2978231_SNP [dm3] 3L_2978231_SNP [dm6]	G	A	4.483e^-4	0.878	INTERGENIC
2R	18040947	2R_18040947_SNP [dm3] 2R_22153442_SNP [dm6]	C	T	4.483e^-4	0.878	INTRON a	TF binding site mE1_TFBS_cnc
2L	2617825	2L_2617825_SNP [dm3] 2L_2617825_SNP [dm6]	A	G	4.492e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7874304	2L_7874304_SNP [dm3] 2L_7874304_SNP [dm6]	A	G	4.494e^-4	0.878	SYNONYMOUS_CODING spz3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12352365	3R_12352365_SNP [dm3] 3R_16526643_SNP [dm6]	G	A	4.496e^-4	0.878	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2551948	3R_2551948_SNP [dm3] 3R_6726226_SNP [dm6]	A	T	4.501e^-4	0.878	INTRON pb	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
X	10041854	X_10041854_INS [dm3] X_10147821_INS [dm6]	AG	CACCC	4.502e^-4	0.878	INTRON CR44894 & 1 other
2R	10954501	2R_10954501_SNP [dm3] 2R_15066996_SNP [dm6]	C	T	4.514e^-4	0.878	INTERGENIC
3L	8948422	3L_8948422_SNP [dm3] 3L_8955322_SNP [dm6]	G	A	4.521e^-4	0.878	SYNONYMOUS_CODING GNBP3 UPSTREAM orb2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	248947	X_248947_INS [dm3] X_354914_INS [dm6]	A	AA	4.522e^-4	0.878	INTRON CG32816	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3L	12647784	3L_12647784_SNP [dm3] 3L_12654684_SNP [dm6]	G	T	4.523e^-4	0.878	INTERGENIC
X	8731098	X_8731098_SNP [dm3] X_8837065_SNP [dm6]	A	T	4.525e^-4	0.878	DOWNSTREAM CR45537 INTERGENIC
2R	11048646	2R_11048646_SNP [dm3] 2R_15161141_SNP [dm6]	A	C	4.526e^-4	0.878	INTRON igl
2R	14477158	2R_14477158_SNP [dm3] 2R_18589653_SNP [dm6]	T	A	4.537e^-4	0.878	INTRON GEFmeso
X	2595359	X_2595359_SNP [dm3] X_2701326_SNP [dm6]	C	T	4.540e^-4	0.878	UTR_3_PRIME Csat DOWNSTREAM CG2662
2L	19467895	2L_19467895_SNP [dm3] 2L_19467895_SNP [dm6]	A	T	4.553e^-4	0.878	DOWNSTREAM tj INTERGENIC
X	4273670	X_4273670_SNP [dm3] X_4379637_SNP [dm6]	G	A	4.553e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_sens
2L	5540864	2L_5540864_SNP [dm3] 2L_5540864_SNP [dm6]	T	G	4.553e^-4	0.878	SYNONYMOUS_CODING Hel25E INTRON Hel25E	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
3L	15791591	3L_15791591_SNP [dm3] 3L_15798491_SNP [dm6]	C	G	4.553e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10580681	3L_10580681_SNP [dm3] 3L_10587581_SNP [dm6]	C	T	4.556e^-4	0.878	INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	20465975	2L_20465975_DEL [dm3] 2L_20465975_DEL [dm6]	AGGGTTTGA	A	4.559e^-4	0.878	INTRON CR44980
2L	1239603	2L_1239603_SNP [dm3] 2L_1239603_SNP [dm6]	A	G	4.559e^-4	0.878	UPSTREAM CG5397 INTERGENIC
3R	25550827	3R_25550827_SNP [dm3] 3R_29725105_SNP [dm6]	T	C	4.562e^-4	0.878	UTR_5_PRIME CG18731 UPSTREAM Kul & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk
2R	6253713	2R_6253713_SNP [dm3] 2R_10366208_SNP [dm6]	T	C	4.567e^-4	0.878	INTRON CG42732
2R	20216901	2R_20216901_SNP [dm3] 2R_24329378_SNP [dm6]	T	C	4.569e^-4	0.878	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3L	5291299	3L_5291299_DEL [dm3] 3L_5298199_DEL [dm6]	GTCGAC	G	4.573e^-4	0.878	INTERGENIC
3L	9803255	3L_9803255_SNP [dm3] 3L_9810155_SNP [dm6]	T	A	4.577e^-4	0.878	INTERGENIC
3L	11656757	3L_11656757_SNP [dm3] 3L_11663657_SNP [dm6]	A	G	4.579e^-4	0.878	INTRON CG32085	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	245272	X_245272_SNP [dm3] X_351239_SNP [dm6]	T	C	4.583e^-4	0.878	DOWNSTREAM CG3777 & 1 other INTRON CG32816
2L	18916693	2L_18916693_SNP [dm3] 2L_18916693_SNP [dm6]	T	C	4.583e^-4	0.878	UTR_3_PRIME ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	19414995	3R_19414995_SNP [dm3] 3R_23589273_SNP [dm6]	T	C	4.584e^-4	0.878	NON_SYNONYMOUS_CODING CG10182 DOWNSTREAM CG33337
3L	18671041	3L_18671041_DEL [dm3] 3L_18677941_DEL [dm6]	CATTAATACTAAGCCAGTTG...	C	4.589e^-4	0.878	DOWNSTREAM GNBP1 INTERGENIC
3R	2706180	3R_2706180_SNP [dm3] 3R_6880458_SNP [dm6]	T	G	4.592e^-4	0.878	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
3L	9672297	3L_9672297_SNP [dm3] 3L_9679197_SNP [dm6]	C	A	4.603e^-4	0.878	UPSTREAM CG16717 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	17974927	X_17974927_SNP [dm3] X_18080894_SNP [dm6]	G	A	4.608e^-4	0.878	SYNONYMOUS_CODING CG7536	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4783664	2L_4783664_SNP [dm3] 2L_4783664_SNP [dm6]	C	T	4.613e^-4	0.878	INTRON CG15630
2L	18110976	2L_18110976_SNP [dm3] 2L_18110976_SNP [dm6]	G	A	4.623e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
3R	17952801	3R_17952801_SNP [dm3] 3R_22127079_SNP [dm6]	T	A	4.624e^-4	0.878	INTRON CG42390
2R	8869227	2R_8869227_SNP [dm3] 2R_12981722_SNP [dm6]	T	C	4.627e^-4	0.878	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	17552470	3R_17552470_SNP [dm3] 3R_21726748_SNP [dm6]	C	T	4.627e^-4	0.878	INTERGENIC
3L	18265457	3L_18265457_SNP [dm3] 3L_18272357_SNP [dm6]	T	C	4.636e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	2659203	3R_2659203_SNP [dm3] 3R_6833481_SNP [dm6]	C	T	4.640e^-4	0.878	INTRON Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	15136627	2R_15136627_SNP [dm3] 2R_19249122_SNP [dm6]	G	T	4.642e^-4	0.878	UPSTREAM wbl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
X	11151841	X_11151841_SNP [dm3] X_11257808_SNP [dm6]	G	A	4.643e^-4	0.878	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18099590	2L_18099590_SNP [dm3] 2L_18099590_SNP [dm6]	T	C	4.644e^-4	0.878	INTERGENIC
2R	11302202	2R_11302202_SNP [dm3] 2R_15414697_SNP [dm6]	G	C	4.646e^-4	0.878	INTRON CG43729
3L	13611380	3L_13611380_SNP [dm3] 3L_13618280_SNP [dm6]	T	C	4.651e^-4	0.878	INTRON bru-3
3L	14219596	3L_14219596_SNP [dm3] 3L_14226496_SNP [dm6]	A	T	4.652e^-4	0.878	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9595645	2R_9595645_SNP [dm3] 2R_13708140_SNP [dm6]	T	G	4.653e^-4	0.878	INTRON fas
X	246439	X_246439_SNP [dm3] X_352406_SNP [dm6]	A	G	4.653e^-4	0.878	UPSTREAM CG43182 INTRON CG32816
3R	23539507	3R_23539507_SNP [dm3] 3R_27713785_SNP [dm6]	A	T	4.674e^-4	0.878	INTERGENIC
3R	2680331	3R_2680331_SNP [dm3] 3R_6854609_SNP [dm6]	A	T	4.677e^-4	0.878	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	8620460	2R_8620460_SNP [dm3] 2R_12732955_SNP [dm6]	A	C	4.678e^-4	0.878	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2243136	3L_2243136_SNP [dm3] 3L_2243136_SNP [dm6]	G	A	4.710e^-4	0.878	SYNONYMOUS_CODING ACXD UTR_3_PRIME ACXD	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22784083	3R_22784083_SNP [dm3] 3R_26958361_SNP [dm6]	T	C	4.715e^-4	0.878	START_GAINED CG6330 UTR_5_PRIME CG6330
3R	16522190	3R_16522190_SNP [dm3] 3R_20696468_SNP [dm6]	C	T	4.718e^-4	0.878	INTRON Oamb
3R	14647060	3R_14647060_SNP [dm3] 3R_18821338_SNP [dm6]	T	G	4.722e^-4	0.878	INTRON CG18208
3R	19126503	3R_19126503_SNP [dm3] 3R_23300781_SNP [dm6]	T	A	4.724e^-4	0.878	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17608693	X_17608693_SNP [dm3] X_17714660_SNP [dm6]	G	A	4.725e^-4	0.878	INTRON CG42684
3R	16540267	3R_16540267_SNP [dm3] 3R_20714545_SNP [dm6]	G	A	4.740e^-4	0.878	START_GAINED Oamb UTR_5_PRIME Oamb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18319683	3L_18319683_INS [dm3] 3L_18326583_INS [dm6]	A	AACATT	4.742e^-4	0.878	INTERGENIC
2L	14916456	2L_14916456_SNP [dm3] 2L_14916456_SNP [dm6]	G	T	4.749e^-4	0.878	INTRON CG42313
3R	16535497	3R_16535497_SNP [dm3] 3R_20709775_SNP [dm6]	G	A	4.749e^-4	0.878	INTRON Oamb
3R	20931768	3R_20931768_SNP [dm3] 3R_25106046_SNP [dm6]	A	G	4.749e^-4	0.878	INTRON CG34027
3L	8403273	3L_8403273_SNP [dm3] 3L_8410173_SNP [dm6]	C	T	4.755e^-4	0.878	SYNONYMOUS_CODING Oseg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9562589	2R_9562589_SNP [dm3] 2R_13675084_SNP [dm6]	G	T	4.759e^-4	0.878	UPSTREAM CR45032 INTRON fas
X	97614	X_97614_SNP [dm3] X_200610_SNP [dm6]	T	G	4.761e^-4	0.878	UTR_3_PRIME tyn	TF binding site BDTNP1_TFBS_dl
3R	2729066	3R_2729066_SNP [dm3] 3R_6903344_SNP [dm6]	A	C	4.762e^-4	0.878	DOWNSTREAM CR43252 INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9784627	2L_9784627_SNP [dm3] 2L_9784627_SNP [dm6]	T	A	4.777e^-4	0.878	INTRON IP3K1
3L	13605150	3L_13605150_SNP [dm3] 3L_13612050_SNP [dm6]	C	T	4.782e^-4	0.878	INTRON bru-3
3R	16537443	3R_16537443_SNP [dm3] 3R_20711721_SNP [dm6]	C	T	4.790e^-4	0.878	INTRON Oamb
3R	2688940	3R_2688940_SNP [dm3] 3R_6863218_SNP [dm6]	G	A	4.792e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12315060	3L_12315060_SNP [dm3] 3L_12321960_SNP [dm6]	T	C	4.798e^-4	0.878	INTERGENIC
3R	2407860	3R_2407860_SNP [dm3] 3R_6582138_SNP [dm6]	G	A	4.830e^-4	0.878	UTR_3_PRIME CG2336 INTRON dpr11
3R	17952851	3R_17952851_SNP [dm3] 3R_22127129_SNP [dm6]	A	T	4.842e^-4	0.878	INTRON CG42390
3R	23847319	3R_23847319_SNP [dm3] 3R_28021597_SNP [dm6]	C	A	4.843e^-4	0.878	INTERGENIC
X	12781763	X_12781763_SNP [dm3] X_12887730_SNP [dm6]	G	C	4.861e^-4	0.878	INTRON Pde9
3L	4519897	3L_4519897_INS [dm3] 3L_4519897_INS [dm6]	G	GG	4.863e^-4	0.878	INTRON Tie
2L	10741251	2L_10741251_SNP [dm3] 2L_10741251_SNP [dm6]	A	G	4.864e^-4	0.878	SYNONYMOUS_CODING CG6729 UPSTREAM mir-4970 DOWNSTREAM CG12299	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8462655	3L_8462655_SNP [dm3] 3L_8469555_SNP [dm6]	T	G	4.868e^-4	0.878	INTRON Gug	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7612479	2R_7612479_SNP [dm3] 2R_11724974_SNP [dm6]	A	G	4.869e^-4	0.878	SYNONYMOUS_CODING pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19363037	2R_19363037_INS [dm3] 2R_23475514_INS [dm6]	A	AA	4.870e^-4	0.878	DOWNSTREAM CG13557 INTRON CG43795
2L	14916308	2L_14916308_SNP [dm3] 2L_14916308_SNP [dm6]	T	A	4.870e^-4	0.878	INTRON CG42313
3L	9672604	3L_9672604_SNP [dm3] 3L_9679504_SNP [dm6]	G	T	4.871e^-4	0.878	UPSTREAM fry INTRON CG16717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2617860	2L_2617860_SNP [dm3] 2L_2617860_SNP [dm6]	A	C	4.872e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1585337	3L_1585337_SNP [dm3] 3L_1585337_SNP [dm6]	T	G	4.875e^-4	0.878	INTRON CG13917
3R	20029788	3R_20029788_SNP [dm3] 3R_24204066_SNP [dm6]	C	A	4.883e^-4	0.878	INTRON twin	TF binding site mE1_TFBS_cnc
2L	2462414	2L_2462414_SNP [dm3] 2L_2462414_SNP [dm6]	C	T	4.884e^-4	0.878	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2698349	3R_2698349_SNP [dm3] 3R_6872627_SNP [dm6]	T	C	4.884e^-4	0.878	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	15697526	2R_15697526_SNP [dm3] 2R_19810021_SNP [dm6]	A	G	4.885e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14372097	3R_14372097_SNP [dm3] 3R_18546375_SNP [dm6]	A	T	4.888e^-4	0.878	UPSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11089392	3R_11089392_SNP [dm3] 3R_15263670_SNP [dm6]	A	C	4.893e^-4	0.878	UTR_5_PRIME Set UPSTREAM eIF-2gamma & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	15826860	2L_15826860_SNP [dm3] 2L_15826860_SNP [dm6]	C	G	4.899e^-4	0.878	INTERGENIC
2L	7260545	2L_7260545_DEL [dm3] 2L_7260545_DEL [dm6]	TATT	T	4.902e^-4	0.878	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2602893	X_2602893_SNP [dm3] X_2708860_SNP [dm6]	C	T	4.913e^-4	0.878	START_GAINED CG2681 UTR_5_PRIME CG2681	TF binding site mE1_TFBS_chinmo
2L	2239021	2L_2239021_SNP [dm3] 2L_2239021_SNP [dm6]	T	G	4.923e^-4	0.878	SYNONYMOUS_CODING Tengl2 UPSTREAM Tengl3 DOWNSTREAM Tengl1
3R	22741486	3R_22741486_SNP [dm3] 3R_26915764_SNP [dm6]	A	G	4.927e^-4	0.878	UTR_5_PRIME sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	11041908	X_11041908_SNP [dm3] X_11147875_SNP [dm6]	C	A	4.937e^-4	0.878	INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2353577	2L_2353577_SNP [dm3] 2L_2353577_SNP [dm6]	C	A	4.940e^-4	0.878	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2727733	3R_2727733_SNP [dm3] 3R_6902011_SNP [dm6]	G	T	4.945e^-4	0.878	INTRON Antp
X	220590	X_220590_SNP [dm3] X_326557_SNP [dm6]	C	T	4.949e^-4	0.878	INTRON CG3777 & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	7852626	3L_7852626_SNP [dm3] 3L_7859526_SNP [dm6]	A	T	4.950e^-4	0.878	INTRON Pdp1
2L	22211354	2L_22211354_INS [dm3] 2L_22211354_INS [dm6]	A	ACGTTAAATA	4.952e^-4	0.878	INTRON Ir40a
2R	14583698	2R_14583698_SNP [dm3] 2R_18696193_SNP [dm6]	G	A	4.966e^-4	0.878	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14405280	3L_14405280_SNP [dm3] 3L_14412180_SNP [dm6]	C	A	4.968e^-4	0.878	NON_SYNONYMOUS_CODING CG3919 DOWNSTREAM bbg INTRON CG3919
X	20946283	X_20946283_SNP [dm3] X_21075256_SNP [dm6]	T	C	4.974e^-4	0.878	INTRON bves
3R	24475806	3R_24475806_SNP [dm3] 3R_28650084_SNP [dm6]	G	A	4.980e^-4	0.878	UTR_3_PRIME CG31050
3R	18791730	3R_18791730_SNP [dm3] 3R_22966008_SNP [dm6]	G	A	4.983e^-4	0.878	UPSTREAM Tpl94D INTERGENIC
2R	10071494	2R_10071494_SNP [dm3] 2R_14183989_SNP [dm6]	C	T	4.989e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2384902	X_2384902_SNP [dm3] X_2490869_SNP [dm6]	A	G	4.992e^-4	0.878	INTRON trol	TF binding site BDTNP1_TFBS_twi
3R	4010401	3R_4010401_SNP [dm3] 3R_8184679_SNP [dm6]	C	G	4.996e^-4	0.878	INTERGENIC
3L	12986197	3L_12986197_SNP [dm3] 3L_12993097_SNP [dm6]	A	T	4.998e^-4	0.878	INTERGENIC
2L	6109288	2L_6109288_SNP [dm3] 2L_6109288_SNP [dm6]	G	A	5.003e^-4	0.878	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26093036	3R_26093036_DEL [dm3] 3R_30267314_DEL [dm6]	CG	C	5.005e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12230737	2R_12230737_SNP [dm3] 2R_16343232_SNP [dm6]	G	A	5.005e^-4	0.878	UTR_5_PRIME CG7997	TF binding site BDTNP1_TFBS_twi
2R	8869232	2R_8869232_SNP [dm3] 2R_12981727_SNP [dm6]	G	A	5.008e^-4	0.878	UPSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	3735095	3L_3735095_SNP [dm3] 3L_3735095_SNP [dm6]	G	T	5.010e^-4	0.878	INTRON CG32264
3R	19126495	3R_19126495_SNP [dm3] 3R_23300773_SNP [dm6]	G	A	5.018e^-4	0.878	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2661718	3R_2661718_SNP [dm3] 3R_6835996_SNP [dm6]	C	T	5.023e^-4	0.878	INTRON Scr	regulatory region REDfly_CRMs
2R	6113206	2R_6113206_SNP [dm3] 2R_10225701_SNP [dm6]	A	C	5.023e^-4	0.878	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14530267	3L_14530267_SNP [dm3] 3L_14537167_SNP [dm6]	A	G	5.024e^-4	0.878	SYNONYMOUS_CODING CG43246 UPSTREAM bbg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16603978	2R_16603978_SNP [dm3] 2R_20716473_SNP [dm6]	G	A	5.030e^-4	0.878	INTRON dpr
2L	22005625	2L_22005625_SNP [dm3] 2L_22005625_SNP [dm6]	A	T	5.031e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4333616	2L_4333616_SNP [dm3] 2L_4333616_SNP [dm6]	A	G	5.034e^-4	0.878	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
X	12103952	X_12103952_SNP [dm3] X_12209919_SNP [dm6]	A	C	5.037e^-4	0.878	INTRON Ten-a
X	21174534	X_21174534_INS [dm3] X_21303507_INS [dm6]	T	TGTCGTCGGCA...	5.040e^-4	0.878	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
2L	18113383	2L_18113383_SNP [dm3] 2L_18113383_SNP [dm6]	C	T	5.050e^-4	0.878	UPSTREAM CG44476 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2518974	3L_2518974_SNP [dm3] 3L_2518974_SNP [dm6]	A	G	5.053e^-4	0.878	DOWNSTREAM CR45170 INTRON Spn
2L	13274788	2L_13274788_SNP [dm3] 2L_13274788_SNP [dm6]	C	T	5.055e^-4	0.878	SYNONYMOUS_CODING CG44085 INTRON CG44085
2R	6119545	2R_6119545_SNP [dm3] 2R_10232040_SNP [dm6]	A	G	5.055e^-4	0.878	SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	22733521	3L_22733521_SNP [dm3] 3L_22740421_SNP [dm6]	A	G	5.058e^-4	0.878	SYNONYMOUS_CODING l_3_04053 DOWNSTREAM CR45163	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15398627	3L_15398627_SNP [dm3] 3L_15405527_SNP [dm6]	A	C	5.060e^-4	0.878	INTERGENIC
2L	8810192	2L_8810192_INS [dm3] 2L_8810192_INS [dm6]	C	CC	5.061e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16394489	2L_16394489_SNP [dm3] 2L_16394489_SNP [dm6]	A	C	5.077e^-4	0.878	INTERGENIC
3R	2720026	3R_2720026_SNP [dm3] 3R_6894304_SNP [dm6]	C	G	5.080e^-4	0.878	UPSTREAM CR45559 DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2742908	3R_2742908_SNP [dm3] 3R_6917186_SNP [dm6]	G	A	5.080e^-4	0.878	INTRON Antp	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	7166291	3R_7166291_SNP [dm3] 3R_11340569_SNP [dm6]	G	A	5.087e^-4	0.878	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12924016	3L_12924016_SNP [dm3] 3L_12930916_SNP [dm6]	G	T	5.087e^-4	0.878	INTERGENIC
2R	13087374	2R_13087374_SNP [dm3] 2R_17199869_SNP [dm6]	A	G	5.094e^-4	0.878	INTERGENIC
X	277567	X_277567_SNP [dm3] X_383534_SNP [dm6]	C	A	5.103e^-4	0.878	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19551735	3L_19551735_SNP [dm3] 3L_19558635_SNP [dm6]	C	T	5.108e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4573970	X_4573970_SNP [dm3] X_4679937_SNP [dm6]	C	T	5.114e^-4	0.878	UPSTREAM rap DOWNSTREAM Pp2C1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9340571	3R_9340571_SNP [dm3] 3R_13514849_SNP [dm6]	C	T	5.127e^-4	0.878	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.110e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.001572

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.3306	0.0256

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1842 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	16309500	3R_16309500_SNP [dm3] 3R_20483778_SNP [dm6]	G	A	4.322e^-7	0.672	INTRON Gfrl
3L	15187371	3L_15187371_DEL [dm3] 3L_15194271_DEL [dm6]	AA	C	9.497e^-7	0.672	INTERGENIC
3R	20565879	3R_20565879_SNP [dm3] 3R_24740157_SNP [dm6]	T	G	1.144e^-6	0.672	INTRON tok
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	1.434e^-6	0.672	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8302043	2L_8302043_SNP [dm3] 2L_8302043_SNP [dm6]	C	T	2.000e^-6	0.75	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
X	17739404	X_17739404_SNP [dm3] X_17845371_SNP [dm6]	A	C	3.260e^-6	0.824	UTR_5_PRIME Ucp4A UPSTREAM CG8142 INTRON Ucp4A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8301319	2L_8301319_SNP [dm3] 2L_8301319_SNP [dm6]	A	T	3.719e^-6	0.824	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13420626	3L_13420626_SNP [dm3] 3L_13427526_SNP [dm6]	C	T	5.020e^-6	0.824	UPSTREAM CG14105 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12432270	3L_12432270_SNP [dm3] 3L_12439170_SNP [dm6]	G	T	5.302e^-6	0.824	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13883152	2L_13883152_SNP [dm3] 2L_13883152_SNP [dm6]	C	T	5.435e^-6	0.824	INTRON CenG1A
2L	8302024	2L_8302024_SNP [dm3] 2L_8302024_SNP [dm6]	A	G	5.496e^-6	0.824	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3L	13420681	3L_13420681_SNP [dm3] 3L_13427581_SNP [dm6]	G	A	5.590e^-6	0.824	UPSTREAM CG14105 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15187366	3L_15187366_DEL [dm3] 3L_15194266_DEL [dm6]	AGT	A	5.966e^-6	0.824	INTERGENIC
2L	18812043	2L_18812043_SNP [dm3] 2L_18812043_SNP [dm6]	T	A	6.356e^-6	0.824	UPSTREAM CG10570 & 3 others INTERGENIC
3L	12432230	3L_12432230_SNP [dm3] 3L_12439130_SNP [dm6]	A	T	6.588e^-6	0.824	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8627387	2R_8627387_SNP [dm3] 2R_12739882_SNP [dm6]	A	T	7.098e^-6	0.832	INTRON CG42663
3L	15187386	3L_15187386_SNP [dm3] 3L_15194286_SNP [dm6]	G	A	8.275e^-6	0.836	INTERGENIC
X	17739369	X_17739369_SNP [dm3] X_17845336_SNP [dm6]	T	A	8.296e^-6	0.836	UTR_5_PRIME Ucp4A UPSTREAM CG8142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8301543	2L_8301543_SNP [dm3] 2L_8301543_SNP [dm6]	T	C	8.545e^-6	0.836	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	13343270	3R_13343270_SNP [dm3] 3R_17517548_SNP [dm6]	G	C	9.094e^-6	0.836	DOWNSTREAM CR44349 INTERGENIC
2L	15769864	2L_15769864_SNP [dm3] 2L_15769864_SNP [dm6]	C	T	9.360e^-6	0.836	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA
X	17739411	X_17739411_SNP [dm3] X_17845378_SNP [dm6]	C	T	1.137e^-5	0.841	UTR_5_PRIME Ucp4A UPSTREAM CG8142 INTRON Ucp4A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4415907	2L_4415907_SNP [dm3] 2L_4415907_SNP [dm6]	C	T	1.139e^-5	0.841	INTRON CG15431
3L	10581223	3L_10581223_SNP [dm3] 3L_10588123_SNP [dm6]	T	A	1.185e^-5	0.841	INTRON A2bp1	TF binding site mE1_TFBS_inv
3R	4607652	3R_4607652_SNP [dm3] 3R_8781930_SNP [dm6]	T	C	1.196e^-5	0.841	NON_SYNONYMOUS_CODING Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_HSA
3R	3753051	3R_3753051_SNP [dm3] 3R_7927329_SNP [dm6]	A	G	1.202e^-5	0.841	INTRON dsx
3L	11168316	3L_11168316_SNP [dm3] 3L_11175216_SNP [dm6]	G	C	1.270e^-5	0.841	INTRON CG14142
3L	13420648	3L_13420648_DEL [dm3] 3L_13427548_DEL [dm6]	GTAGA	G	1.277e^-5	0.841	UPSTREAM CG14105 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5849246	2L_5849246_SNP [dm3] 2L_5849246_SNP [dm6]	A	C	1.300e^-5	0.841	INTRON TrissinR
X	14960614	X_14960614_SNP [dm3] X_15066581_SNP [dm6]	G	A	1.417e^-5	0.876	UPSTREAM dob & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14960910	X_14960910_SNP [dm3] X_15066877_SNP [dm6]	T	C	1.455e^-5	0.876	UPSTREAM dob & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	6018834	2L_6018834_SNP [dm3] 2L_6018834_SNP [dm6]	G	A	1.536e^-5	0.876	SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	16307464	3R_16307464_SNP [dm3] 3R_20481742_SNP [dm6]	T	C	1.585e^-5	0.876	INTRON Gfrl
2R	6259147	2R_6259147_SNP [dm3] 2R_10371642_SNP [dm6]	A	G	1.588e^-5	0.876	INTRON CG42732
X	17739405	X_17739405_SNP [dm3] X_17845372_SNP [dm6]	G	C	1.683e^-5	0.902	UTR_5_PRIME Ucp4A UPSTREAM CG8142 INTRON Ucp4A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16307389	3R_16307389_SNP [dm3] 3R_20481667_SNP [dm6]	T	G	1.791e^-5	0.902	INTRON Gfrl
X	7893476	X_7893476_SNP [dm3] X_7999443_SNP [dm6]	T	C	1.852e^-5	0.902	NON_SYNONYMOUS_CODING Tbh
3R	19066475	3R_19066475_SNP [dm3] 3R_23240753_SNP [dm6]	G	A	1.905e^-5	0.902	UPSTREAM CG4467 INTRON CG4467
3R	9157413	3R_9157413_INS [dm3] 3R_13331691_INS [dm6]	T	TAAGTGTTTAACTAAATGGC...	1.920e^-5	0.902	INTRON PK2-R2
2L	19874712	2L_19874712_SNP [dm3] 2L_19874712_SNP [dm6]	T	C	1.924e^-5	0.902	INTRON sick	TF binding site mE1_TFBS_cad
2L	18820390	2L_18820390_SNP [dm3] 2L_18820390_SNP [dm6]	G	A	2.098e^-5	0.96	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
2L	10008023	2L_10008023_SNP [dm3] 2L_10008023_SNP [dm6]	T	A	2.248e^-5	0.961	UTR_3_PRIME CG4747 DOWNSTREAM CG4747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9051907	3R_9051907_SNP [dm3] 3R_13226185_SNP [dm6]	A	T	2.274e^-5	0.961	UTR_3_PRIME Ace INTRON Ace
3R	5025546	3R_5025546_SNP [dm3] 3R_9199824_SNP [dm6]	G	T	2.297e^-5	0.961	INTRON pum
2L	21849181	2L_21849181_SNP [dm3] 2L_21849181_SNP [dm6]	T	A	2.310e^-5	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8420901	2L_8420901_SNP [dm3] 2L_8420901_SNP [dm6]	T	C	2.395e^-5	0.961	INTRON Akap200	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18854575	2R_18854575_SNP [dm3] 2R_22967052_SNP [dm6]	A	T	2.539e^-5	0.961	INTERGENIC
3R	9106263	3R_9106263_SNP [dm3] 3R_13280541_SNP [dm6]	G	T	2.554e^-5	0.961	INTRON CG8630
3R	23735235	3R_23735235_SNP [dm3] 3R_27909513_SNP [dm6]	C	T	2.596e^-5	0.961	INTERGENIC
X	14960780	X_14960780_SNP [dm3] X_15066747_SNP [dm6]	G	T	2.626e^-5	0.961	UPSTREAM dob & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14090594	2R_14090594_SNP [dm3] 2R_18203089_SNP [dm6]	G	C	2.629e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9224132	3R_9224132_SNP [dm3] 3R_13398410_SNP [dm6]	T	C	2.663e^-5	0.961	UTR_3_PRIME CG14377 DOWNSTREAM CG9796 & 1 other
3L	13420629	3L_13420629_INS [dm3] 3L_13427529_INS [dm6]	C	CAGTTGGATGGGATAT...	2.748e^-5	0.973	UPSTREAM CG14105 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14960700	X_14960700_SNP [dm3] X_15066667_SNP [dm6]	C	G	2.914e^-5	0.993	UPSTREAM dob & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3939712	3L_3939712_INS [dm3] 3L_3939712_INS [dm6]	C	CTTG	2.916e^-5	0.993	SPLICE_SITE_REGION CG12766 UPSTREAM CR43916 INTRON CG12766
3R	19631668	3R_19631668_SNP [dm3] 3R_23805946_SNP [dm6]	T	G	3.072e^-5	0.993	NON_SYNONYMOUS_CODING CG33111 INTRON CG33111 & 1 other
2L	4024751	2L_4024751_SNP [dm3] 2L_4024751_SNP [dm6]	T	C	3.115e^-5	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15187412	3L_15187412_SNP [dm3] 3L_15194312_SNP [dm6]	T	C	3.161e^-5	0.993	INTERGENIC
3R	14619401	3R_14619401_SNP [dm3] 3R_18793679_SNP [dm6]	C	T	3.172e^-5	0.993	UTR_5_PRIME CG7720 INTRON CG7720
3R	13278477	3R_13278477_SNP [dm3] 3R_17452755_SNP [dm6]	G	A	3.276e^-5	0.993	INTERGENIC
3R	9200559	3R_9200559_SNP [dm3] 3R_13374837_SNP [dm6]	G	A	3.286e^-5	0.993	INTRON CG9813	TF binding site BDTNP1_TFBS_dl
2L	16374411	2L_16374411_INS [dm3] 2L_16374411_INS [dm6]	A	AA	3.309e^-5	0.993	INTERGENIC
3R	13418792	3R_13418792_SNP [dm3] 3R_17593070_SNP [dm6]	T	G	3.453e^-5	0.993	INTERGENIC
2L	4417004	2L_4417004_SNP [dm3] 2L_4417004_SNP [dm6]	T	G	3.621e^-5	0.993	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3R	13418761	3R_13418761_SNP [dm3] 3R_17593039_SNP [dm6]	G	T	3.831e^-5	0.993	INTERGENIC
3R	18778421	3R_18778421_SNP [dm3] 3R_22952699_SNP [dm6]	G	A	3.858e^-5	0.993	INTRON klg
2L	9086201	2L_9086201_SNP [dm3] 2L_9086201_SNP [dm6]	A	T	3.876e^-5	0.993	INTRON Toll-4
2R	14032462	2R_14032462_SNP [dm3] 2R_18144957_SNP [dm6]	T	A	3.899e^-5	0.993	INTRON pAbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14960852	X_14960852_SNP [dm3] X_15066819_SNP [dm6]	T	C	3.963e^-5	0.993	UPSTREAM dob & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12353935	2R_12353935_SNP [dm3] 2R_16466430_SNP [dm6]	C	A	4.001e^-5	0.993	UPSTREAM CheB53a INTERGENIC
3L	12928122	3L_12928122_SNP [dm3] 3L_12935022_SNP [dm6]	G	C	4.013e^-5	0.993	INTERGENIC
3R	2855630	3R_2855630_SNP [dm3] 3R_7029908_SNP [dm6]	T	A	4.120e^-5	0.993	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9178874	3R_9178874_SNP [dm3] 3R_13353152_SNP [dm6]	A	T	4.217e^-5	0.993	UPSTREAM mthl12 INTERGENIC
3L	3955676	3L_3955676_SNP [dm3] 3L_3955676_SNP [dm6]	C	G	4.234e^-5	0.993	UTR_3_PRIME CG12605
3R	15207027	3R_15207027_SNP [dm3] 3R_19381305_SNP [dm6]	G	A	4.264e^-5	0.993	INTRON Ino80
3R	23128207	3R_23128207_SNP [dm3] 3R_27302485_SNP [dm6]	T	G	4.408e^-5	0.993	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13202519	3R_13202519_SNP [dm3] 3R_17376797_SNP [dm6]	G	A	4.468e^-5	0.993	INTRON Brf
X	12234135	X_12234135_SNP [dm3] X_12340102_SNP [dm6]	C	T	4.511e^-5	0.993	INTERGENIC
2R	16398161	2R_16398161_SNP [dm3] 2R_20510656_SNP [dm6]	C	T	4.515e^-5	0.993	UPSTREAM CR44648 DOWNSTREAM CR44647 INTERGENIC
3R	9085654	3R_9085654_SNP [dm3] 3R_13259932_SNP [dm6]	A	G	4.538e^-5	0.993	UPSTREAM CG11686 & 1 other INTERGENIC
2L	14315787	2L_14315787_SNP [dm3] 2L_14315787_SNP [dm6]	T	G	4.690e^-5	0.993	INTRON wb
3R	17296797	3R_17296797_SNP [dm3] 3R_21471075_SNP [dm6]	G	A	4.833e^-5	0.993	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6848572	2R_6848572_SNP [dm3] 2R_10961067_SNP [dm6]	T	C	4.879e^-5	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9405671	3R_9405671_SNP [dm3] 3R_13579949_SNP [dm6]	C	G	4.936e^-5	0.993	INTERGENIC
3R	22817673	3R_22817673_SNP [dm3] 3R_26991951_SNP [dm6]	T	C	4.984e^-5	0.993	INTERGENIC
3L	14153941	3L_14153941_SNP [dm3] 3L_14160841_SNP [dm6]	A	T	5.005e^-5	0.993	INTERGENIC	regulatory region REDfly_CRMs
3R	9145392	3R_9145392_SNP [dm3] 3R_13319670_SNP [dm6]	A	T	5.050e^-5	0.993	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16275899	X_16275899_SNP [dm3] X_16381866_SNP [dm6]	T	A	5.160e^-5	0.993	DOWNSTREAM CG9992 & 1 other INTERGENIC
3L	13993015	3L_13993015_SNP [dm3] 3L_13999915_SNP [dm6]	A	T	5.174e^-5	0.993	SYNONYMOUS_CODING CG8783 UPSTREAM CG17359	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11053521	2R_11053521_SNP [dm3] 2R_15166016_SNP [dm6]	G	A	5.207e^-5	0.993	INTRON igl
X	13823847	X_13823847_SNP [dm3] X_13929814_SNP [dm6]	C	G	5.412e^-5	0.993	INTRON mamo
2L	8301293	2L_8301293_SNP [dm3] 2L_8301293_SNP [dm6]	T	C	5.455e^-5	0.993	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	2918883	2L_2918883_SNP [dm3] 2L_2918883_SNP [dm6]	T	A	5.481e^-5	0.993	INTRON lilli
2R	16092741	2R_16092741_SNP [dm3] 2R_20205236_SNP [dm6]	T	C	5.543e^-5	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10809457	3L_10809457_SNP [dm3] 3L_10816357_SNP [dm6]	T	C	5.579e^-5	0.993	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
3L	8001086	3L_8001086_SNP [dm3] 3L_8007986_SNP [dm6]	T	G	5.598e^-5	0.993	INTRON nmo
2R	12792827	2R_12792827_SNP [dm3] 2R_16905322_SNP [dm6]	T	C	5.724e^-5	0.993	INTERGENIC
3R	9157298	3R_9157298_SNP [dm3] 3R_13331576_SNP [dm6]	C	T	5.769e^-5	0.993	SYNONYMOUS_CODING PK2-R2
3R	5025564	3R_5025564_SNP [dm3] 3R_9199842_SNP [dm6]	T	A	5.835e^-5	0.993	INTRON pum
X	4895958	X_4895958_SNP [dm3] X_5001925_SNP [dm6]	A	G	5.862e^-5	0.993	INTRON CR44833	regulatory region REDfly_CRMs
X	13823848	X_13823848_SNP [dm3] X_13929815_SNP [dm6]	A	T	5.881e^-5	0.993	INTRON mamo
2L	4414055	2L_4414055_SNP [dm3] 2L_4414055_SNP [dm6]	T	C	6.029e^-5	0.993	INTRON CG15431
3R	9153967	3R_9153967_SNP [dm3] 3R_13328245_SNP [dm6]	A	G	6.047e^-5	0.993	DOWNSTREAM PK2-R2 INTERGENIC
2R	6259153	2R_6259153_SNP [dm3] 2R_10371648_SNP [dm6]	C	T	6.123e^-5	0.993	INTRON CG42732
3R	9157547	3R_9157547_SNP [dm3] 3R_13331825_SNP [dm6]	T	C	6.133e^-5	0.993	INTRON PK2-R2
2R	14089936	2R_14089936_DEL [dm3] 2R_18202431_DEL [dm6]	AGGTCA	A	6.226e^-5	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13202531	3R_13202531_SNP [dm3] 3R_17376809_SNP [dm6]	C	T	6.265e^-5	0.993	INTRON Brf
3R	9155860	3R_9155860_SNP [dm3] 3R_13330138_SNP [dm6]	C	T	6.281e^-5	0.993	INTRON PK2-R2
2R	14409991	2R_14409991_SNP [dm3] 2R_18522486_SNP [dm6]	C	T	6.418e^-5	0.993	INTRON CG43066	TF binding site mE1_TFBS_chinmo
3L	11454033	3L_11454033_SNP [dm3] 3L_11460933_SNP [dm6]	G	A	6.510e^-5	0.993	INTERGENIC
3L	4792169	3L_4792169_SNP [dm3] 3L_4792169_SNP [dm6]	A	G	6.578e^-5	0.993	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20462317	X_20462317_SNP [dm3] X_20591290_SNP [dm6]	G	T	6.596e^-5	0.993	UTR_3_PRIME RunxA
3R	9120438	3R_9120438_SNP [dm3] 3R_13294716_SNP [dm6]	A	C	6.618e^-5	0.993	UPSTREAM CG8773 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12997583	X_12997583_SNP [dm3] X_13103550_SNP [dm6]	G	C	6.632e^-5	0.993	INTRON CG43313
X	20462353	X_20462353_SNP [dm3] X_20591326_SNP [dm6]	C	T	6.703e^-5	0.993	UTR_3_PRIME RunxA
3R	9165754	3R_9165754_SNP [dm3] 3R_13340032_SNP [dm6]	C	A	6.724e^-5	0.993	UTR_5_PRIME PK2-R1
2L	18820407	2L_18820407_SNP [dm3] 2L_18820407_SNP [dm6]	A	G	6.806e^-5	0.993	NON_SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
2L	3127718	2L_3127718_SNP [dm3] 2L_3127718_SNP [dm6]	C	A	6.824e^-5	0.993	NON_SYNONYMOUS_CODING toc UPSTREAM CG15403	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18408237	3L_18408237_SNP [dm3] 3L_18415137_SNP [dm6]	C	A	6.874e^-5	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2923541	X_2923541_SNP [dm3] X_3029508_SNP [dm6]	T	G	6.914e^-5	0.993	INTRON kirre
2R	8440284	2R_8440284_SNP [dm3] 2R_12552779_SNP [dm6]	A	T	7.058e^-5	0.993	INTRON fra
3L	18408204	3L_18408204_SNP [dm3] 3L_18415104_SNP [dm6]	A	G	7.072e^-5	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8301927	2L_8301927_SNP [dm3] 2L_8301927_SNP [dm6]	T	C	7.100e^-5	0.993	UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8301928	2L_8301928_SNP [dm3] 2L_8301928_SNP [dm6]	T	C	7.100e^-5	0.993	SPLICE_SITE_REGION wol UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	18821569	2L_18821569_SNP [dm3] 2L_18821569_SNP [dm6]	C	A	7.129e^-5	0.993	INTRON CG17324
2L	19626163	2L_19626163_SNP [dm3] 2L_19626163_SNP [dm6]	T	G	7.187e^-5	0.993	INTRON Lar
2L	6945072	2L_6945072_SNP [dm3] 2L_6945072_SNP [dm6]	G	A	7.290e^-5	0.993	DOWNSTREAM ihog INTRON CG10158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8702663	2R_8702663_DEL [dm3] 2R_12815158_DEL [dm6]	ACAGGCAGA	A	7.434e^-5	0.993	INTERGENIC
3L	16692250	3L_16692250_SNP [dm3] 3L_16699150_SNP [dm6]	G	C	7.438e^-5	0.993	INTRON Lasp & 1 other
3R	15206957	3R_15206957_SNP [dm3] 3R_19381235_SNP [dm6]	C	A	7.454e^-5	0.993	INTRON Ino80
X	4761001	X_4761001_SNP [dm3] X_4866968_SNP [dm6]	A	G	7.467e^-5	0.993	INTRON CG42594
3R	9145428	3R_9145428_INS [dm3] 3R_13319706_INS [dm6]	T	TCGTGGTCTGGGTT...	7.572e^-5	0.993	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10360795	2L_10360795_SNP [dm3] 2L_10360795_SNP [dm6]	T	C	7.634e^-5	0.993	SYNONYMOUS_CODING Cand1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16164166	X_16164166_SNP [dm3] X_16270133_SNP [dm6]	A	G	7.764e^-5	0.993	UPSTREAM Mfe2 INTRON kat80	TF binding site mE1_TFBS_bab1
3R	9178770	3R_9178770_SNP [dm3] 3R_13353048_SNP [dm6]	G	T	7.814e^-5	0.993	UPSTREAM mthl12 INTERGENIC
3L	15391565	3L_15391565_DEL [dm3] 3L_15398465_DEL [dm6]	AATTTGAAGTGA...	A	7.883e^-5	0.993	INTERGENIC
X	16076100	X_16076100_SNP [dm3] X_16182067_SNP [dm6]	T	A	7.896e^-5	0.993	INTERGENIC	TF binding site mE1_TFBS_sens
3R	15207407	3R_15207407_SNP [dm3] 3R_19381685_SNP [dm6]	G	A	7.899e^-5	0.993	SYNONYMOUS_CODING Ino80
2R	6251417	2R_6251417_SNP [dm3] 2R_10363912_SNP [dm6]	T	C	7.933e^-5	0.993	DOWNSTREAM Gr47a INTRON CG42732
3R	9085707	3R_9085707_SNP [dm3] 3R_13259985_SNP [dm6]	G	A	7.943e^-5	0.993	UPSTREAM CG11686 & 1 other INTERGENIC
3L	16337267	3L_16337267_SNP [dm3] 3L_16344167_SNP [dm6]	C	T	7.949e^-5	0.993	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
3R	7320707	3R_7320707_INS [dm3] 3R_11494985_INS [dm6]	T	TAGTTTTTTTTCTT...	8.020e^-5	0.993	INTERGENIC
3L	8001089	3L_8001089_SNP [dm3] 3L_8007989_SNP [dm6]	A	T	8.063e^-5	0.993	INTRON nmo
3L	10701100	3L_10701100_SNP [dm3] 3L_10708000_SNP [dm6]	T	A	8.092e^-5	0.993	INTERGENIC
2R	16905975	2R_16905975_INS [dm3] 2R_21018470_INS [dm6]	A	AA	8.162e^-5	0.993	UPSTREAM RIC-3 INTRON RIC-3
3R	15008986	3R_15008986_SNP [dm3] 3R_19183264_SNP [dm6]	A	G	8.241e^-5	0.993	INTRON CG31475
2R	8673147	2R_8673147_SNP [dm3] 2R_12785642_SNP [dm6]	G	A	8.388e^-5	0.993	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
2L	8301295	2L_8301295_SNP [dm3] 2L_8301295_SNP [dm6]	G	C	8.452e^-5	0.993	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	11053517	2R_11053517_SNP [dm3] 2R_15166012_SNP [dm6]	T	C	8.776e^-5	0.993	INTRON igl
2L	4565747	2L_4565747_SNP [dm3] 2L_4565747_SNP [dm6]	C	T	8.817e^-5	0.993	INTRON dp
3R	9178753	3R_9178753_SNP [dm3] 3R_13353031_SNP [dm6]	A	G	8.822e^-5	0.993	UPSTREAM mthl12 INTERGENIC
2R	14410016	2R_14410016_SNP [dm3] 2R_18522511_SNP [dm6]	C	G	8.881e^-5	0.993	SPLICE_SITE_REGION CG43066 INTRON CG43066	TF binding site mE1_TFBS_chinmo
X	13823844	X_13823844_SNP [dm3] X_13929811_SNP [dm6]	T	A	9.158e^-5	0.993	INTRON mamo
2R	11016278	2R_11016278_SNP [dm3] 2R_15128773_SNP [dm6]	G	C	9.243e^-5	0.993	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	8301891	2L_8301891_SNP [dm3] 2L_8301891_SNP [dm6]	C	G	9.288e^-5	0.993	UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12057583	X_12057583_SNP [dm3] X_12163550_SNP [dm6]	C	T	9.552e^-5	0.993	INTRON Ten-a	transposable element FlyBase
2L	12643102	2L_12643102_MNP [dm3] 2L_12643102_MNP [dm6]	TTT	AAA	9.555e^-5	0.993	INTRON Ref2
3R	9085837	3R_9085837_SNP [dm3] 3R_13260115_SNP [dm6]	C	T	9.559e^-5	0.993	UPSTREAM CG11686 & 1 other INTERGENIC
2L	8225023	2L_8225023_SNP [dm3] 2L_8225023_SNP [dm6]	G	A	9.577e^-5	0.993	SYNONYMOUS_CODING Pvr
3L	15391562	3L_15391562_SNP [dm3] 3L_15398462_SNP [dm6]	A	T	9.617e^-5	0.993	INTERGENIC
2L	9523849	2L_9523849_INS [dm3] 2L_9523849_INS [dm6]	G	GG	9.628e^-5	0.993	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	18371244	3R_18371244_SNP [dm3] 3R_22545522_SNP [dm6]	C	A	9.684e^-5	0.993	INTRON AdipoR
2R	8175504	2R_8175504_SNP [dm3] 2R_12287999_SNP [dm6]	C	T	9.694e^-5	0.993	INTRON CG42700
2L	7272199	2L_7272199_SNP [dm3] 2L_7272199_SNP [dm6]	G	A	9.719e^-5	0.993	INTRON Wnt4	TF binding site mE1_TFBS_HSA
X	16275904	X_16275904_DEL [dm3] X_16381871_DEL [dm6]	TTCATAACATTTCATCTCAT...	T	9.776e^-5	0.993	DOWNSTREAM CG9992 & 1 other INTERGENIC
3R	24721899	3R_24721899_SNP [dm3] 3R_28896177_SNP [dm6]	G	C	9.829e^-5	0.993	INTRON Doa
2L	16240684	2L_16240684_SNP [dm3] 2L_16240684_SNP [dm6]	T	G	9.840e^-5	0.993	UTR_3_PRIME CG42817 DOWNSTREAM CG42817
2L	9346013	2L_9346013_SNP [dm3] 2L_9346013_SNP [dm6]	T	C	9.989e^-5	0.993	INTERGENIC
3L	7337728	3L_7337728_SNP [dm3] 3L_7344628_SNP [dm6]	C	G	1.001e^-4	0.993	UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16576517	2R_16576517_SNP [dm3] 2R_20689012_SNP [dm6]	G	A	1.026e^-4	0.993	INTERGENIC
3R	22062357	3R_22062357_SNP [dm3] 3R_26236635_SNP [dm6]	T	A	1.041e^-4	0.993	INTRON CR42745
3L	7967558	3L_7967558_SNP [dm3] 3L_7974458_SNP [dm6]	T	C	1.042e^-4	0.993	SYNONYMOUS_CODING CG8042 DOWNSTREAM HP4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	1695879	2R_1695879_SNP [dm3] 2R_5808374_SNP [dm6]	C	G	1.044e^-4	0.993	INTRON dpr12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11006103	2R_11006103_SNP [dm3] 2R_15118598_SNP [dm6]	G	T	1.044e^-4	0.993	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6018876	2L_6018876_SNP [dm3] 2L_6018876_SNP [dm6]	T	G	1.047e^-4	0.993	SYNONYMOUS_CODING H2.0	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	8301308	2L_8301308_SNP [dm3] 2L_8301308_SNP [dm6]	G	A	1.065e^-4	0.993	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	22751855	3R_22751855_SNP [dm3] 3R_26926133_SNP [dm6]	A	G	1.065e^-4	0.993	INTRON sda
X	9730614	X_9730614_SNP [dm3] X_9836581_SNP [dm6]	T	A	1.067e^-4	0.993	INTRON CG32698
2L	4417215	2L_4417215_SNP [dm3] 2L_4417215_SNP [dm6]	C	T	1.098e^-4	0.993	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7751880	X_7751880_SNP [dm3] X_7857847_SNP [dm6]	C	T	1.098e^-4	0.993	UPSTREAM CG1409 INTERGENIC
2R	15697530	2R_15697530_SNP [dm3] 2R_19810025_SNP [dm6]	T	C	1.099e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14409962	2R_14409962_SNP [dm3] 2R_18522457_SNP [dm6]	C	T	1.104e^-4	0.993	INTRON CG43066	TF binding site mE1_TFBS_chinmo
X	18806982	X_18806982_SNP [dm3] X_18912949_SNP [dm6]	C	A	1.105e^-4	0.993	DOWNSTREAM CR44708 INTERGENIC
2R	15985567	2R_15985567_SNP [dm3] 2R_20098062_SNP [dm6]	C	G	1.107e^-4	0.993	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_HSA
2L	10246243	2L_10246243_SNP [dm3] 2L_10246243_SNP [dm6]	T	A	1.121e^-4	0.993	UTR_5_PRIME chico DOWNSTREAM CR44995 INTRON chico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9178873	3R_9178873_SNP [dm3] 3R_13353151_SNP [dm6]	T	C	1.139e^-4	0.993	UPSTREAM mthl12 INTERGENIC
3R	15923988	3R_15923988_SNP [dm3] 3R_20098266_SNP [dm6]	G	C	1.141e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17188142	2R_17188142_SNP [dm3] 2R_21300637_SNP [dm6]	G	A	1.141e^-4	0.993	INTRON CG42672	TF binding site mE1_TFBS_sens
3R	22817660	3R_22817660_SNP [dm3] 3R_26991938_SNP [dm6]	T	A	1.151e^-4	0.993	INTERGENIC
3R	8975496	3R_8975496_SNP [dm3] 3R_13149774_SNP [dm6]	C	T	1.151e^-4	0.993	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3R	25030037	3R_25030037_SNP [dm3] 3R_29204315_SNP [dm6]	G	A	1.157e^-4	0.993	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11297133	X_11297133_SNP [dm3] X_11403100_SNP [dm6]	C	T	1.166e^-4	0.993	DOWNSTREAM dlg1 INTRON dlg1
2L	9836327	2L_9836327_INS [dm3] 2L_9836327_INS [dm6]	G	GACTTTAAAG	1.171e^-4	0.993	INTRON nAChRalpha6
X	13817072	X_13817072_SNP [dm3] X_13923039_SNP [dm6]	T	C	1.184e^-4	0.993	INTRON mamo
2L	5416829	2L_5416829_SNP [dm3] 2L_5416829_SNP [dm6]	C	A	1.191e^-4	0.993	DOWNSTREAM H15 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	9730636	X_9730636_SNP [dm3] X_9836603_SNP [dm6]	T	C	1.207e^-4	0.993	SYNONYMOUS_CODING CG32698
X	9730598	X_9730598_DEL [dm3] X_9836565_DEL [dm6]	AA	A	1.209e^-4	0.993	INTRON CG32698
X	18806965	X_18806965_SNP [dm3] X_18912932_SNP [dm6]	A	G	1.226e^-4	0.993	DOWNSTREAM CR44708 INTERGENIC
3R	9151797	3R_9151797_SNP [dm3] 3R_13326075_SNP [dm6]	G	A	1.235e^-4	0.993	INTERGENIC
2L	19852434	2L_19852434_SNP [dm3] 2L_19852434_SNP [dm6]	C	T	1.235e^-4	0.993	INTRON sick
X	13823840	X_13823840_SNP [dm3] X_13929807_SNP [dm6]	A	T	1.236e^-4	0.993	INTRON mamo
X	15301241	X_15301241_SNP [dm3] X_15407208_SNP [dm6]	G	T	1.237e^-4	0.993	UTR_3_PRIME Cngl INTRON Cngl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13278516	3R_13278516_SNP [dm3] 3R_17452794_SNP [dm6]	G	A	1.240e^-4	0.993	INTERGENIC
3R	9049611	3R_9049611_SNP [dm3] 3R_13223889_SNP [dm6]	T	C	1.246e^-4	0.993	DOWNSTREAM Ace INTRON Ace
3L	12665054	3L_12665054_SNP [dm3] 3L_12671954_SNP [dm6]	A	G	1.254e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	1.254e^-4	0.993	INTRON CG14142
3R	9177409	3R_9177409_SNP [dm3] 3R_13351687_SNP [dm6]	A	C	1.254e^-4	0.993	INTERGENIC
2R	15257248	2R_15257248_SNP [dm3] 2R_19369743_SNP [dm6]	A	C	1.256e^-4	0.993	SPLICE_SITE_REGION CG9416 INTRON CG9416
2R	7119068	2R_7119068_SNP [dm3] 2R_11231563_SNP [dm6]	G	T	1.259e^-4	0.993	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	13126223	3R_13126223_SNP [dm3] 3R_17300501_SNP [dm6]	A	T	1.282e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9730624	X_9730624_SNP [dm3] X_9836591_SNP [dm6]	C	T	1.282e^-4	0.993	SPLICE_SITE_REGION CG32698 INTRON CG32698
2L	4428044	2L_4428044_SNP [dm3] 2L_4428044_SNP [dm6]	T	A	1.283e^-4	0.993	INTRON CG15431
3R	9190433	3R_9190433_SNP [dm3] 3R_13364711_SNP [dm6]	T	A	1.295e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	24482470	3R_24482470_SNP [dm3] 3R_28656748_SNP [dm6]	G	A	1.298e^-4	0.993	INTERGENIC
3R	25064853	3R_25064853_INS [dm3] 3R_29239131_INS [dm6]	T	TGTAT	1.309e^-4	0.993	UTR_3_PRIME CG31427 UPSTREAM CG11951 INTRON CG31427
3R	18380008	3R_18380008_SNP [dm3] 3R_22554286_SNP [dm6]	T	A	1.311e^-4	0.993	UPSTREAM bond INTRON bond
3R	18379974	3R_18379974_SNP [dm3] 3R_22554252_SNP [dm6]	C	T	1.321e^-4	0.993	UPSTREAM bond INTRON bond
3R	7123033	3R_7123033_SNP [dm3] 3R_11297311_SNP [dm6]	A	G	1.329e^-4	0.993	INTRON CR31386	TF binding site mE1_TFBS_chinmo
3R	6431212	3R_6431212_SNP [dm3] 3R_10605490_SNP [dm6]	G	A	1.336e^-4	0.993	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18823938	2L_18823938_SNP [dm3] 2L_18823938_SNP [dm6]	G	T	1.343e^-4	0.993	INTRON CG17323
X	10263073	X_10263073_SNP [dm3] X_10369040_SNP [dm6]	A	T	1.343e^-4	0.993	INTRON CG17841	TF binding site mE1_TFBS_HSA
2L	8225110	2L_8225110_SNP [dm3] 2L_8225110_SNP [dm6]	C	T	1.343e^-4	0.993	SYNONYMOUS_CODING Pvr
3R	13202558	3R_13202558_SNP [dm3] 3R_17376836_SNP [dm6]	T	C	1.344e^-4	0.993	SYNONYMOUS_CODING Brf
2R	14090178	2R_14090178_SNP [dm3] 2R_18202673_SNP [dm6]	C	T	1.346e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16163288	X_16163288_SNP [dm3] X_16269255_SNP [dm6]	T	A	1.349e^-4	0.993	SYNONYMOUS_CODING kat80
2R	10549540	2R_10549540_DEL [dm3] 2R_14662035_DEL [dm6]	GT	G	1.353e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9644488	2L_9644488_SNP [dm3] 2L_9644488_SNP [dm6]	A	T	1.359e^-4	0.993	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
3R	20704722	3R_20704722_SNP [dm3] 3R_24879000_SNP [dm6]	C	A	1.366e^-4	0.993	UPSTREAM CG11089 DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15697526	2R_15697526_SNP [dm3] 2R_19810021_SNP [dm6]	A	G	1.373e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18299556	2R_18299556_SNP [dm3] 2R_22412051_SNP [dm6]	T	C	1.393e^-4	0.993	UPSTREAM qkr58E-3 DOWNSTREAM qkr58E-1 INTRON Mes4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	4706894	X_4706894_SNP [dm3] X_4812861_SNP [dm6]	G	A	1.395e^-4	0.993	INTERGENIC
3R	5026344	3R_5026344_SNP [dm3] 3R_9200622_SNP [dm6]	A	T	1.398e^-4	0.993	INTRON pum
X	9730607	X_9730607_SNP [dm3] X_9836574_SNP [dm6]	C	A	1.404e^-4	0.993	INTRON CG32698
3R	9150710	3R_9150710_SNP [dm3] 3R_13324988_SNP [dm6]	A	C	1.409e^-4	0.993	INTERGENIC
2R	8673176	2R_8673176_SNP [dm3] 2R_12785671_SNP [dm6]	C	T	1.411e^-4	0.993	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
3R	19631677	3R_19631677_SNP [dm3] 3R_23805955_SNP [dm6]	C	T	1.411e^-4	0.993	NON_SYNONYMOUS_CODING CG33111 INTRON CG33111 & 1 other
2L	2706542	2L_2706542_SNP [dm3] 2L_2706542_SNP [dm6]	A	T	1.423e^-4	0.993	INTRON CG31690
3L	15641511	3L_15641511_SNP [dm3] 3L_15648411_SNP [dm6]	A	G	1.430e^-4	0.993	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
3L	18092016	3L_18092016_DEL [dm3] 3L_18098916_DEL [dm6]	AAA	A	1.430e^-4	0.993	INTRON CG13698
2L	1864083	2L_1864083_INS [dm3] 2L_1864083_INS [dm6]	C	CTC	1.450e^-4	0.993	INTRON CG31663
3L	12726291	3L_12726291_SNP [dm3] 3L_12733191_SNP [dm6]	T	A	1.459e^-4	0.993	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10885821	3L_10885821_SNP [dm3] 3L_10892721_SNP [dm6]	T	A	1.460e^-4	0.993	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
X	9730595	X_9730595_SNP [dm3] X_9836562_SNP [dm6]	A	G	1.462e^-4	0.993	INTRON CG32698
3L	7281918	3L_7281918_SNP [dm3] 3L_7288818_SNP [dm6]	C	T	1.471e^-4	0.993	INTRON unc-13-4A
2R	17796349	2R_17796349_SNP [dm3] 2R_21908844_SNP [dm6]	G	A	1.473e^-4	0.993	INTRON Fili
3R	21843765	3R_21843765_DEL [dm3] 3R_26018043_DEL [dm6]	GAGGTACCA	C	1.479e^-4	0.993	UPSTREAM E_spl_m2-BFM EXON CR43643	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7736458	3R_7736458_SNP [dm3] 3R_11910736_SNP [dm6]	T	C	1.479e^-4	0.993	INTRON Cad87A
2L	19232622	2L_19232622_SNP [dm3] 2L_19232622_SNP [dm6]	A	G	1.480e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9836325	2L_9836325_SNP [dm3] 2L_9836325_SNP [dm6]	C	A	1.491e^-4	0.993	INTRON nAChRalpha6
2R	1695809	2R_1695809_SNP [dm3] 2R_5808304_SNP [dm6]	C	T	1.494e^-4	0.993	INTRON dpr12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19041352	3R_19041352_SNP [dm3] 3R_23215630_SNP [dm6]	G	A	1.505e^-4	0.993	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9087220	3R_9087220_SNP [dm3] 3R_13261498_SNP [dm6]	T	C	1.513e^-4	0.993	INTRON CG11686
3L	3937888	3L_3937888_SNP [dm3] 3L_3937888_SNP [dm6]	C	T	1.545e^-4	0.993	UTR_5_PRIME CG10866 DOWNSTREAM CG12766	TF binding site mE1_TFBS_cad
3L	4743499	3L_4743499_SNP [dm3] 3L_4743499_SNP [dm6]	C	T	1.549e^-4	0.993	INTRON RhoGEF64C
2R	18700076	2R_18700076_SNP [dm3] 2R_22812571_SNP [dm6]	G	A	1.562e^-4	0.993	INTRON stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13338159	X_13338159_INS [dm3] X_13444126_INS [dm6]	A	AG	1.566e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	16792967	X_16792967_SNP [dm3] X_16898934_SNP [dm6]	A	G	1.567e^-4	0.993	INTERGENIC
3R	9161061	3R_9161061_SNP [dm3] 3R_13335339_SNP [dm6]	T	A	1.575e^-4	0.993	INTERGENIC
3R	6431208	3R_6431208_SNP [dm3] 3R_10605486_SNP [dm6]	C	T	1.576e^-4	0.993	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14476249	3L_14476249_SNP [dm3] 3L_14483149_SNP [dm6]	T	A	1.577e^-4	0.993	INTRON bbg
X	2797262	X_2797262_SNP [dm3] X_2903229_SNP [dm6]	G	C	1.588e^-4	0.993	INTRON kirre
2L	8854124	2L_8854124_SNP [dm3] 2L_8854124_SNP [dm6]	A	T	1.593e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13338198	X_13338198_SNP [dm3] X_13444165_SNP [dm6]	G	C	1.594e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	11068433	2L_11068433_DEL [dm3] 2L_11068433_DEL [dm6]	AA	A	1.594e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10809517	3L_10809517_SNP [dm3] 3L_10816417_SNP [dm6]	C	T	1.597e^-4	0.993	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
X	7751811	X_7751811_SNP [dm3] X_7857778_SNP [dm6]	T	A	1.605e^-4	0.993	UPSTREAM CG1409 INTERGENIC
3L	16692245	3L_16692245_SNP [dm3] 3L_16699145_SNP [dm6]	T	C	1.614e^-4	0.993	INTRON Lasp & 1 other
3R	15000493	3R_15000493_SNP [dm3] 3R_19174771_SNP [dm6]	G	A	1.626e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_inv
3R	9058644	3R_9058644_SNP [dm3] 3R_13232922_SNP [dm6]	T	G	1.627e^-4	0.993	INTRON Ace
3R	9153049	3R_9153049_SNP [dm3] 3R_13327327_SNP [dm6]	C	T	1.633e^-4	0.993	INTERGENIC
3L	9535876	3L_9535876_SNP [dm3] 3L_9542776_SNP [dm6]	G	A	1.643e^-4	0.993	SYNONYMOUS_CODING Ir67a
2L	5545825	2L_5545825_SNP [dm3] 2L_5545825_SNP [dm6]	G	T	1.644e^-4	0.993	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	11494203	2R_11494203_SNP [dm3] 2R_15606698_SNP [dm6]	G	A	1.651e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19066555	3R_19066555_SNP [dm3] 3R_23240833_SNP [dm6]	A	G	1.660e^-4	0.993	UPSTREAM CG4467 INTRON CG4467
2R	10801712	2R_10801712_SNP [dm3] 2R_14914207_SNP [dm6]	T	C	1.667e^-4	0.993	INTRON CG10249
X	9645709	X_9645709_SNP [dm3] X_9751676_SNP [dm6]	C	G	1.669e^-4	0.993	INTRON Sp1
2R	15327382	2R_15327382_SNP [dm3] 2R_19439877_SNP [dm6]	G	A	1.669e^-4	0.993	SPLICE_SITE_REGION Spt5 INTRON Spt5	TF binding site mE1_TFBS_sens
3R	15001762	3R_15001762_SNP [dm3] 3R_19176040_SNP [dm6]	A	C	1.674e^-4	0.993	UPSTREAM CG14282 INTERGENIC
3L	12666719	3L_12666719_SNP [dm3] 3L_12673619_SNP [dm6]	C	T	1.683e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15207112	3R_15207112_SNP [dm3] 3R_19381390_SNP [dm6]	A	T	1.687e^-4	0.993	INTRON Ino80
2L	3000123	2L_3000123_SNP [dm3] 2L_3000123_SNP [dm6]	C	A	1.688e^-4	0.993	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12665186	3L_12665186_SNP [dm3] 3L_12672086_SNP [dm6]	C	G	1.698e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16905950	2R_16905950_INS [dm3] 2R_21018445_INS [dm6]	A	ATCA	1.701e^-4	0.993	UPSTREAM CG3295 & 1 other INTRON RIC-3
3R	13433069	3R_13433069_SNP [dm3] 3R_17607347_SNP [dm6]	T	G	1.702e^-4	0.993	SYNONYMOUS_CODING sll	TF binding site mE1_TFBS_sens
3R	9151708	3R_9151708_SNP [dm3] 3R_13325986_SNP [dm6]	A	G	1.709e^-4	0.993	INTERGENIC
2R	17955615	2R_17955615_SNP [dm3] 2R_22068110_SNP [dm6]	A	C	1.712e^-4	0.993	NON_SYNONYMOUS_CODING CG44249 UPSTREAM Snp INTRON Snp
2R	4512913	2R_4512913_INS [dm3] 2R_8625408_INS [dm6]	T	TT	1.716e^-4	0.993	UPSTREAM Vps25 DOWNSTREAM beta3GalTII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	8767800	2L_8767800_SNP [dm3] 2L_8767800_SNP [dm6]	A	T	1.716e^-4	0.993	SYNONYMOUS_CODING CG9463
2R	17900353	2R_17900353_SNP [dm3] 2R_22012848_SNP [dm6]	C	A	1.720e^-4	0.993	INTRON CG34370
2L	21847408	2L_21847408_SNP [dm3] 2L_21847408_SNP [dm6]	C	T	1.725e^-4	0.993	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12354761	X_12354761_SNP [dm3] X_12460728_SNP [dm6]	C	T	1.725e^-4	0.993	INTRON Rab40
3R	26687028	3R_26687028_SNP [dm3] 3R_30861306_SNP [dm6]	C	T	1.737e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14617092	3R_14617092_SNP [dm3] 3R_18791370_SNP [dm6]	G	A	1.752e^-4	0.993	INTRON CG7720
2R	18656623	2R_18656623_SNP [dm3] 2R_22769118_SNP [dm6]	G	C	1.771e^-4	0.993	INTRON CG42260
3R	8967720	3R_8967720_SNP [dm3] 3R_13141998_SNP [dm6]	C	T	1.780e^-4	0.993	INTRON timeout & 2 others
2R	15327318	2R_15327318_SNP [dm3] 2R_19439813_SNP [dm6]	T	C	1.785e^-4	0.993	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16296891	3R_16296891_SNP [dm3] 3R_20471169_SNP [dm6]	A	C	1.790e^-4	0.993	INTRON Gfrl
2L	7199817	2L_7199817_SNP [dm3] 2L_7199817_SNP [dm6]	A	T	1.794e^-4	0.993	INTRON CG4502
2R	16317313	2R_16317313_SNP [dm3] 2R_20429808_SNP [dm6]	A	C	1.801e^-4	0.993	INTRON CG12484
X	21173531	X_21173531_SNP [dm3] X_21302504_SNP [dm6]	G	T	1.809e^-4	0.993	INTRON CG1718
3R	9169279	3R_9169279_SNP [dm3] 3R_13343557_SNP [dm6]	T	A	1.810e^-4	0.993	INTRON PK2-R1
X	19608158	X_19608158_DEL [dm3] X_19714125_DEL [dm6]	AT	A	1.810e^-4	0.993	DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10216879	3L_10216879_SNP [dm3] 3L_10223779_SNP [dm6]	G	A	1.810e^-4	0.993	UPSTREAM scramb1 INTRON scramb1
2L	1602755	2L_1602755_SNP [dm3] 2L_1602755_SNP [dm6]	T	G	1.812e^-4	0.993	INTRON CG31935 & 1 other
3L	11908638	3L_11908638_SNP [dm3] 3L_11915538_SNP [dm6]	G	A	1.814e^-4	0.993	INTRON CG44837
2L	16216057	2L_16216057_SNP [dm3] 2L_16216057_SNP [dm6]	G	A	1.816e^-4	0.993	DOWNSTREAM CR43840 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7901546	2L_7901546_SNP [dm3] 2L_7901546_SNP [dm6]	A	G	1.820e^-4	0.993	INTRON Snoo
3L	13419609	3L_13419609_SNP [dm3] 3L_13426509_SNP [dm6]	T	A	1.820e^-4	0.993	NON_SYNONYMOUS_CODING CG14105 UPSTREAM CG14106
2L	19650389	2L_19650389_SNP [dm3] 2L_19650389_SNP [dm6]	C	T	1.822e^-4	0.993	INTRON Lar
3R	4608440	3R_4608440_SNP [dm3] 3R_8782718_SNP [dm6]	G	A	1.827e^-4	0.993	SYNONYMOUS_CODING Pif1A UTR_5_PRIME Pif1B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17887635	2R_17887635_SNP [dm3] 2R_22000130_SNP [dm6]	C	A	1.828e^-4	0.993	INTRON CG34370
2L	21854780	2L_21854780_SNP [dm3] 2L_21854780_SNP [dm6]	G	A	1.831e^-4	0.993	UPSTREAM CR44917 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19626451	3L_19626451_SNP [dm3] 3L_19633351_SNP [dm6]	C	A	1.832e^-4	0.993	UPSTREAM wnd INTRON wnd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9200615	3R_9200615_SNP [dm3] 3R_13374893_SNP [dm6]	C	A	1.836e^-4	0.993	INTRON CG9813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11016090	2R_11016090_SNP [dm3] 2R_15128585_SNP [dm6]	A	G	1.841e^-4	0.993	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	11176694	3L_11176694_SNP [dm3] 3L_11183594_SNP [dm6]	T	A	1.844e^-4	0.993	INTRON GlcAT-P
3R	9063709	3R_9063709_SNP [dm3] 3R_13237987_SNP [dm6]	T	A	1.850e^-4	0.993	INTRON Ace
3L	15392820	3L_15392820_SNP [dm3] 3L_15399720_SNP [dm6]	C	T	1.857e^-4	0.993	INTERGENIC
3L	3467416	3L_3467416_SNP [dm3] 3L_3467416_SNP [dm6]	A	T	1.859e^-4	0.993	DOWNSTREAM CG14971 INTRON CycJ
2R	11053529	2R_11053529_SNP [dm3] 2R_15166024_SNP [dm6]	T	C	1.865e^-4	0.993	INTRON igl
3R	9178871	3R_9178871_SNP [dm3] 3R_13353149_SNP [dm6]	A	T	1.872e^-4	0.993	UPSTREAM mthl12 INTERGENIC
2R	18445662	2R_18445662_INS [dm3] 2R_22558157_INS [dm6]	T	TTTTATT	1.881e^-4	0.993	INTRON px
3R	16306921	3R_16306921_SNP [dm3] 3R_20481199_SNP [dm6]	T	A	1.884e^-4	0.993	UTR_5_PRIME Gfrl INTRON Gfrl
3L	16408913	3L_16408913_SNP [dm3] 3L_16415813_SNP [dm6]	C	T	1.893e^-4	0.993	DOWNSTREAM TMS1 INTRON CG4573
3L	8001067	3L_8001067_SNP [dm3] 3L_8007967_SNP [dm6]	C	A	1.899e^-4	0.993	INTRON nmo
2R	16906007	2R_16906007_SNP [dm3] 2R_21018502_SNP [dm6]	A	G	1.902e^-4	0.993	UPSTREAM RIC-3 INTRON RIC-3
2R	15694584	2R_15694584_SNP [dm3] 2R_19807079_SNP [dm6]	T	C	1.913e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_inv
X	10080408	X_10080408_SNP [dm3] X_10186375_SNP [dm6]	T	A	1.917e^-4	0.993	INTRON CG43902 & 1 other
3L	8001133	3L_8001133_SNP [dm3] 3L_8008033_SNP [dm6]	T	A	1.933e^-4	0.993	INTRON nmo
2L	9346044	2L_9346044_SNP [dm3] 2L_9346044_SNP [dm6]	C	T	1.949e^-4	0.993	INTERGENIC
2R	11697464	2R_11697464_SNP [dm3] 2R_15809959_SNP [dm6]	C	G	1.954e^-4	0.993	INTRON tun & 1 other	TF binding site mE1_TFBS_HSA
3R	24651102	3R_24651102_SNP [dm3] 3R_28825380_SNP [dm6]	A	T	1.954e^-4	0.993	UTR_3_PRIME WASp DOWNSTREAM CG1647	TF binding site mE1_TFBS_chinmo
2L	7902182	2L_7902182_SNP [dm3] 2L_7902182_SNP [dm6]	T	C	1.966e^-4	0.993	INTRON Snoo
3R	25975795	3R_25975795_SNP [dm3] 3R_30150073_SNP [dm6]	A	T	1.969e^-4	0.993	UPSTREAM AdoR INTERGENIC
3R	9084758	3R_9084758_SNP [dm3] 3R_13259036_SNP [dm6]	A	T	1.990e^-4	0.993	UPSTREAM Ace INTRON Ace	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26707324	3R_26707324_SNP [dm3] 3R_30881602_SNP [dm6]	G	A	1.998e^-4	0.993	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC
2R	11016220	2R_11016220_DEL [dm3] 2R_15128715_DEL [dm6]	TGCC	T	1.998e^-4	0.993	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9351053	2R_9351053_SNP [dm3] 2R_13463548_SNP [dm6]	G	C	2.017e^-4	0.993	INTRON arr
2L	4290444	2L_4290444_SNP [dm3] 2L_4290444_SNP [dm6]	C	T	2.020e^-4	0.993	INTRON tutl
X	14274420	X_14274420_SNP [dm3] X_14380387_SNP [dm6]	A	T	2.023e^-4	0.993	UTR_5_PRIME betaNACtes4 DOWNSTREAM betaNACtes3 INTRON dpr8
3R	9190439	3R_9190439_SNP [dm3] 3R_13364717_SNP [dm6]	G	A	2.023e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	9079822	2L_9079822_SNP [dm3] 2L_9079822_SNP [dm6]	C	G	2.027e^-4	0.993	INTERGENIC
3R	16306713	3R_16306713_SNP [dm3] 3R_20480991_SNP [dm6]	C	G	2.028e^-4	0.993	UTR_5_PRIME Gfrl INTRON Gfrl
3L	10641748	3L_10641748_SNP [dm3] 3L_10648648_SNP [dm6]	T	C	2.028e^-4	0.993	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20886824	2L_20886824_SNP [dm3] 2L_20886824_SNP [dm6]	C	T	2.031e^-4	0.993	UPSTREAM sky INTRON sky & 1 other	TF binding site mE1_TFBS_Trl
3R	9084632	3R_9084632_SNP [dm3] 3R_13258910_SNP [dm6]	G	A	2.035e^-4	0.993	UPSTREAM Ace INTRON Ace	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13850739	2R_13850739_SNP [dm3] 2R_17963234_SNP [dm6]	A	G	2.045e^-4	0.993	INTERGENIC
X	1705104	X_1705104_SNP [dm3] X_1811071_SNP [dm6]	C	T	2.055e^-4	0.993	INTRON CG42666	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15942894	2R_15942894_SNP [dm3] 2R_20055389_SNP [dm6]	A	C	2.057e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9190471	3R_9190471_SNP [dm3] 3R_13364749_SNP [dm6]	C	A	2.058e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16307095	3R_16307095_SNP [dm3] 3R_20481373_SNP [dm6]	C	A	2.062e^-4	0.993	UTR_5_PRIME Gfrl INTRON Gfrl
2R	14089529	2R_14089529_SNP [dm3] 2R_18202024_SNP [dm6]	G	A	2.073e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7039257	3L_7039257_SNP [dm3] 3L_7046157_SNP [dm6]	A	T	2.080e^-4	0.993	INTRON Mp
2R	10817231	2R_10817231_DEL [dm3] 2R_14929726_DEL [dm6]	TTTG	T	2.083e^-4	0.993	UTR_3_PRIME CG10253 DOWNSTREAM CG10253
2R	20463369	2R_20463369_SNP [dm3] 2R_24575846_SNP [dm6]	C	G	2.084e^-4	0.993	UPSTREAM Start1 INTRON Start1
X	2487827	X_2487827_SNP [dm3] X_2593794_SNP [dm6]	C	G	2.086e^-4	0.993	UTR_5_PRIME egh INTRON egh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5199637	3R_5199637_SNP [dm3] 3R_9373915_SNP [dm6]	C	G	2.094e^-4	0.993	INTRON FER
2R	16906004	2R_16906004_SNP [dm3] 2R_21018499_SNP [dm6]	T	C	2.095e^-4	0.993	UPSTREAM RIC-3 INTRON RIC-3
X	8005761	X_8005761_SNP [dm3] X_8111728_SNP [dm6]	A	T	2.106e^-4	0.993	INTRON Gclc
3L	10879897	3L_10879897_SNP [dm3] 3L_10886797_SNP [dm6]	A	T	2.107e^-4	0.993	UPSTREAM CG6404 INTERGENIC
3R	7123096	3R_7123096_SNP [dm3] 3R_11297374_SNP [dm6]	C	T	2.118e^-4	0.993	INTRON CR31386	TF binding site mE1_TFBS_chinmo
2R	14583678	2R_14583678_SNP [dm3] 2R_18696173_SNP [dm6]	G	A	2.123e^-4	0.993	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7542364	2R_7542364_SNP [dm3] 2R_11654859_SNP [dm6]	C	A	2.128e^-4	0.993	UPSTREAM CG13198 INTRON Roc2
3R	21744544	3R_21744544_SNP [dm3] 3R_25918822_SNP [dm6]	C	T	2.132e^-4	0.993	SYNONYMOUS_CODING CG42235 INTRON CG42235
2L	9197711	2L_9197711_INS [dm3] 2L_9197711_INS [dm6]	T	TT	2.142e^-4	0.993	INTRON tai
2R	18445660	2R_18445660_SNP [dm3] 2R_22558155_SNP [dm6]	A	T	2.153e^-4	0.993	INTRON px
2L	4091290	2L_4091290_DEL [dm3] 2L_4091290_DEL [dm6]	AAGTCT	G	2.161e^-4	0.993	INTRON ed
2R	16839458	2R_16839458_SNP [dm3] 2R_20951953_SNP [dm6]	T	G	2.162e^-4	0.993	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7665037	2R_7665037_SNP [dm3] 2R_11777532_SNP [dm6]	C	G	2.165e^-4	0.993	UPSTREAM CG42493 INTRON ths	TF binding site mE1_TFBS_HSA
3R	9185634	3R_9185634_SNP [dm3] 3R_13359912_SNP [dm6]	C	A	2.168e^-4	0.993	INTERGENIC
2L	10363991	2L_10363991_SNP [dm3] 2L_10363991_SNP [dm6]	A	T	2.175e^-4	0.993	UTR_3_PRIME pim UPSTREAM lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10123448	2R_10123448_DEL [dm3] 2R_14235943_DEL [dm6]	CGCTCT	C	2.177e^-4	0.993	UTR_3_PRIME CG8485 UPSTREAM Opa1	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
3R	9056176	3R_9056176_SNP [dm3] 3R_13230454_SNP [dm6]	A	T	2.179e^-4	0.993	INTRON Ace
2R	8836059	2R_8836059_SNP [dm3] 2R_12948554_SNP [dm6]	A	T	2.195e^-4	0.993	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16309214	3R_16309214_SNP [dm3] 3R_20483492_SNP [dm6]	A	C	2.196e^-4	0.993	INTRON Gfrl
3R	15916675	3R_15916675_SNP [dm3] 3R_20090953_SNP [dm6]	C	A	2.197e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17878211	2L_17878211_SNP [dm3] 2L_17878211_SNP [dm6]	A	G	2.198e^-4	0.993	INTERGENIC
3R	9105137	3R_9105137_DEL [dm3] 3R_13279415_DEL [dm6]	CC	C	2.198e^-4	0.993	UPSTREAM CG8630 INTERGENIC
2R	11497632	2R_11497632_SNP [dm3] 2R_15610127_SNP [dm6]	G	A	2.199e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	8349477	3R_8349477_SNP [dm3] 3R_12523755_SNP [dm6]	C	T	2.200e^-4	0.993	INTRON Octbeta3R
3R	7141644	3R_7141644_SNP [dm3] 3R_11315922_SNP [dm6]	C	A	2.211e^-4	0.993	INTERGENIC
2L	2725257	2L_2725257_DEL [dm3] 2L_2725257_DEL [dm6]	CGATGATC	C	2.218e^-4	0.993	UPSTREAM CG31689 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9087612	3R_9087612_SNP [dm3] 3R_13261890_SNP [dm6]	T	C	2.218e^-4	0.993	DOWNSTREAM Ravus INTRON CG11686
3L	12725677	3L_12725677_SNP [dm3] 3L_12732577_SNP [dm6]	C	G	2.222e^-4	0.993	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	16164165	X_16164165_SNP [dm3] X_16270132_SNP [dm6]	T	G	2.226e^-4	0.993	UPSTREAM Mfe2 INTRON kat80	TF binding site mE1_TFBS_bab1
3R	23430824	3R_23430824_SNP [dm3] 3R_27605102_SNP [dm6]	T	G	2.230e^-4	0.993	INTRON dsd	TF binding site mE1_TFBS_cad
2L	9250278	2L_9250278_SNP [dm3] 2L_9250278_SNP [dm6]	A	C	2.238e^-4	0.993	UTR_3_PRIME aust DOWNSTREAM CR43734 & 1 other
3R	27802290	3R_27802290_DEL [dm3] 3R_31976568_DEL [dm6]	TTAGG	T	2.243e^-4	0.993	INTRON heph	TF binding site BDTNP1_TFBS_twi
3R	26135160	3R_26135160_SNP [dm3] 3R_30309438_SNP [dm6]	T	A	2.245e^-4	0.993	INTRON hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14315003	2R_14315003_SNP [dm3] 2R_18427498_SNP [dm6]	G	A	2.257e^-4	0.993	NON_SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14315434	2R_14315434_SNP [dm3] 2R_18427929_SNP [dm6]	A	G	2.260e^-4	0.993	SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16905985	2R_16905985_SNP [dm3] 2R_21018480_SNP [dm6]	C	T	2.262e^-4	0.993	UPSTREAM RIC-3 INTRON RIC-3
2R	14090794	2R_14090794_INS [dm3] 2R_18203289_INS [dm6]	A	ATA	2.262e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14090796	2R_14090796_SNP [dm3] 2R_18203291_SNP [dm6]	C	G	2.262e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14090800	2R_14090800_SNP [dm3] 2R_18203295_SNP [dm6]	C	T	2.262e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12865951	X_12865951_SNP [dm3] X_12971918_SNP [dm6]	A	T	2.264e^-4	0.993	SYNONYMOUS_CODING CG15721 INTRON CR43636
3R	9178292	3R_9178292_SNP [dm3] 3R_13352570_SNP [dm6]	G	T	2.274e^-4	0.993	INTERGENIC
2L	10308501	2L_10308501_SNP [dm3] 2L_10308501_SNP [dm6]	T	A	2.281e^-4	0.993	DOWNSTREAM CG4968 INTRON Cdk5alpha
2L	22004400	2L_22004400_SNP [dm3] 2L_22004400_SNP [dm6]	G	T	2.285e^-4	0.993	INTERGENIC
2R	16905946	2R_16905946_INS [dm3] 2R_21018441_INS [dm6]	G	GAAATATCCT	2.287e^-4	0.993	UPSTREAM CG3295 & 1 other INTRON RIC-3
X	10263112	X_10263112_SNP [dm3] X_10369079_SNP [dm6]	G	C	2.291e^-4	0.993	INTRON CG17841	TF binding site mE1_TFBS_HSA
2L	10547312	2L_10547312_SNP [dm3] 2L_10547312_SNP [dm6]	G	T	2.291e^-4	0.993	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9190502	3R_9190502_SNP [dm3] 3R_13364780_SNP [dm6]	T	C	2.293e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13343143	3R_13343143_SNP [dm3] 3R_17517421_SNP [dm6]	T	C	2.293e^-4	0.993	DOWNSTREAM CR44349 INTERGENIC
2R	14090083	2R_14090083_SNP [dm3] 2R_18202578_SNP [dm6]	A	G	2.296e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15430623	2R_15430623_SNP [dm3] 2R_19543118_SNP [dm6]	T	G	2.299e^-4	0.993	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	18445643	2R_18445643_SNP [dm3] 2R_22558138_SNP [dm6]	T	G	2.300e^-4	0.993	INTRON px
3L	13271885	3L_13271885_SNP [dm3] 3L_13278785_SNP [dm6]	A	G	2.307e^-4	0.993	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
2R	7913039	2R_7913039_SNP [dm3] 2R_12025534_SNP [dm6]	G	C	2.317e^-4	0.993	UPSTREAM CG8964 DOWNSTREAM Mppe INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11943717	2L_11943717_SNP [dm3] 2L_11943717_SNP [dm6]	C	T	2.319e^-4	0.993	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
2R	18445653	2R_18445653_SNP [dm3] 2R_22558148_SNP [dm6]	G	A	2.321e^-4	0.993	INTRON px
2R	11006133	2R_11006133_SNP [dm3] 2R_15118628_SNP [dm6]	C	T	2.324e^-4	0.993	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9352259	2R_9352259_SNP [dm3] 2R_13464754_SNP [dm6]	A	G	2.329e^-4	0.993	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21855228	2L_21855228_SNP [dm3] 2L_21855228_SNP [dm6]	G	A	2.347e^-4	0.993	EXON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9155046	3R_9155046_SNP [dm3] 3R_13329324_SNP [dm6]	T	A	2.354e^-4	0.993	UTR_3_PRIME PK2-R2
X	2565795	X_2565795_SNP [dm3] X_2671762_SNP [dm6]	A	G	2.355e^-4	0.993	SYNONYMOUS_CODING sgg
2R	8836030	2R_8836030_SNP [dm3] 2R_12948525_SNP [dm6]	A	T	2.356e^-4	0.993	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19066370	3R_19066370_SNP [dm3] 3R_23240648_SNP [dm6]	A	G	2.361e^-4	0.993	UPSTREAM CG4467 INTRON CG4467
2L	21832737	2L_21832737_SNP [dm3] 2L_21832737_SNP [dm6]	A	T	2.362e^-4	0.993	INTRON tsh	TF binding site BDTNP1_TFBS_twi
3L	4345752	3L_4345752_SNP [dm3] 3L_4345752_SNP [dm6]	A	G	2.364e^-4	0.993	UPSTREAM CR45156 & 1 other INTRON Cip4
3R	7995033	3R_7995033_SNP [dm3] 3R_12169311_SNP [dm6]	T	C	2.369e^-4	0.993	INTERGENIC
3L	15392830	3L_15392830_SNP [dm3] 3L_15399730_SNP [dm6]	G	T	2.373e^-4	0.993	INTERGENIC
2L	14351842	2L_14351842_SNP [dm3] 2L_14351842_SNP [dm6]	A	G	2.377e^-4	0.993	UPSTREAM CG43052 & 1 other DOWNSTREAM l_2_34Fd INTERGENIC
2L	12255828	2L_12255828_SNP [dm3] 2L_12255828_SNP [dm6]	T	A	2.378e^-4	0.993	INTRON aret
3L	8001194	3L_8001194_SNP [dm3] 3L_8008094_SNP [dm6]	G	A	2.381e^-4	0.993	INTRON nmo
2R	7542339	2R_7542339_SNP [dm3] 2R_11654834_SNP [dm6]	T	C	2.381e^-4	0.993	UPSTREAM CG13198 INTRON Roc2
2R	16514615	2R_16514615_SNP [dm3] 2R_20627110_SNP [dm6]	G	C	2.383e^-4	0.993	NON_SYNONYMOUS_CODING CG16742
X	6878744	X_6878744_SNP [dm3] X_6984711_SNP [dm6]	A	G	2.383e^-4	0.993	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12724342	3L_12724342_SNP [dm3] 3L_12731242_SNP [dm6]	T	C	2.388e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9287649	2L_9287649_SNP [dm3] 2L_9287649_SNP [dm6]	G	A	2.389e^-4	0.993	INTRON Ggamma30A
2L	10363206	2L_10363206_SNP [dm3] 2L_10363206_SNP [dm6]	A	G	2.389e^-4	0.993	SYNONYMOUS_CODING pim UPSTREAM Cand1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8002348	3L_8002348_SNP [dm3] 3L_8009248_SNP [dm6]	T	A	2.401e^-4	0.993	INTRON nmo
2L	3117165	2L_3117165_SNP [dm3] 2L_3117165_SNP [dm6]	A	G	2.404e^-4	0.993	INTRON toc
X	7071342	X_7071342_SNP [dm3] X_7177309_SNP [dm6]	T	C	2.412e^-4	0.993	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15392816	3L_15392816_SNP [dm3] 3L_15399716_SNP [dm6]	C	T	2.424e^-4	0.993	INTERGENIC
2L	18818833	2L_18818833_SNP [dm3] 2L_18818833_SNP [dm6]	T	A	2.426e^-4	0.993	UPSTREAM CG17324 INTERGENIC
X	13823828	X_13823828_INS [dm3] X_13929795_INS [dm6]	T	TAAGTTTTATACT...	2.427e^-4	0.993	INTRON mamo
X	13823836	X_13823836_DEL [dm3] X_13929803_DEL [dm6]	GAA	T	2.427e^-4	0.993	INTRON mamo
3R	22616429	3R_22616429_SNP [dm3] 3R_26790707_SNP [dm6]	A	G	2.430e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	12725838	3L_12725838_SNP [dm3] 3L_12732738_SNP [dm6]	A	G	2.430e^-4	0.993	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	17696369	2R_17696369_SNP [dm3] 2R_21808864_SNP [dm6]	A	C	2.448e^-4	0.993	INTERGENIC
3L	11162963	3L_11162963_SNP [dm3] 3L_11169863_SNP [dm6]	T	C	2.457e^-4	0.993	UTR_5_PRIME CG7616 UPSTREAM CG7616 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9062158	3R_9062158_SNP [dm3] 3R_13236436_SNP [dm6]	C	A	2.467e^-4	0.993	INTRON Ace
3R	9190494	3R_9190494_INS [dm3] 3R_13364772_INS [dm6]	G	TA	2.471e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9190503	3R_9190503_SNP [dm3] 3R_13364781_SNP [dm6]	G	A	2.471e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9190531	3R_9190531_SNP [dm3] 3R_13364809_SNP [dm6]	A	T	2.471e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13420640	3L_13420640_SNP [dm3] 3L_13427540_SNP [dm6]	G	C	2.471e^-4	0.993	UPSTREAM CG14105 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7039007	3L_7039007_DEL [dm3] 3L_7045907_DEL [dm6]	GG	G	2.476e^-4	0.993	INTRON Mp
3R	19066328	3R_19066328_DEL [dm3] 3R_23240606_DEL [dm6]	CCTC	C	2.480e^-4	0.993	UPSTREAM CG4467 INTRON CG4467
3R	14172609	3R_14172609_INS [dm3] 3R_18346887_INS [dm6]	T	TGTTTTGAT	2.481e^-4	0.993	INTRON CG15803
3R	15008984	3R_15008984_SNP [dm3] 3R_19183262_SNP [dm6]	G	T	2.489e^-4	0.993	INTRON CG31475
2L	2847689	2L_2847689_SNP [dm3] 2L_2847689_SNP [dm6]	C	G	2.494e^-4	0.993	NON_SYNONYMOUS_CODING CG2983 UPSTREAM CG3117
2R	16438634	2R_16438634_SNP [dm3] 2R_20551129_SNP [dm6]	G	C	2.496e^-4	0.993	NON_SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	7071337	X_7071337_SNP [dm3] X_7177304_SNP [dm6]	A	C	2.502e^-4	0.993	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7751802	3R_7751802_SNP [dm3] 3R_11926080_SNP [dm6]	A	T	2.527e^-4	0.993	INTRON Cad87A
X	16076093	X_16076093_SNP [dm3] X_16182060_SNP [dm6]	A	T	2.533e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16905990	2R_16905990_SNP [dm3] 2R_21018485_SNP [dm6]	A	T	2.536e^-4	0.993	UPSTREAM RIC-3 INTRON RIC-3
2R	14089214	2R_14089214_SNP [dm3] 2R_18201709_SNP [dm6]	A	G	2.538e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3083471	2L_3083471_SNP [dm3] 2L_3083471_SNP [dm6]	T	C	2.540e^-4	0.993	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3083482	2L_3083482_SNP [dm3] 2L_3083482_SNP [dm6]	C	T	2.540e^-4	0.993	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	8301290	2L_8301290_SNP [dm3] 2L_8301290_SNP [dm6]	G	A	2.544e^-4	0.993	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	17887927	2R_17887927_SNP [dm3] 2R_22000422_SNP [dm6]	C	T	2.558e^-4	0.993	INTRON CG34370
3R	16289100	3R_16289100_SNP [dm3] 3R_20463378_SNP [dm6]	G	T	2.564e^-4	0.993	INTRON Gfrl
2R	19525812	2R_19525812_SNP [dm3] 2R_23638289_SNP [dm6]	C	T	2.564e^-4	0.993	DOWNSTREAM CR45153 INTRON retn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	15326617	2R_15326617_SNP [dm3] 2R_19439112_SNP [dm6]	T	C	2.571e^-4	0.993	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
3L	11945757	3L_11945757_DEL [dm3] 3L_11952657_DEL [dm6]	TGATTCT	T	2.575e^-4	0.993	CODON_DELETION obst-G DOWNSTREAM CG17826
3R	18370577	3R_18370577_SNP [dm3] 3R_22544855_SNP [dm6]	A	G	2.577e^-4	0.993	SYNONYMOUS_CODING AdipoR
3L	18408249	3L_18408249_SNP [dm3] 3L_18415149_SNP [dm6]	G	C	2.589e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13823832	X_13823832_SNP [dm3] X_13929799_SNP [dm6]	G	T	2.590e^-4	0.993	INTRON mamo
3R	9190510	3R_9190510_SNP [dm3] 3R_13364788_SNP [dm6]	G	A	2.591e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3673527	3L_3673527_SNP [dm3] 3L_3673527_SNP [dm6]	T	A	2.594e^-4	0.993	INTERGENIC
3L	4295194	3L_4295194_SNP [dm3] 3L_4295194_SNP [dm6]	T	A	2.607e^-4	0.993	SYNONYMOUS_CODING dyl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14206843	2R_14206843_SNP [dm3] 2R_18319338_SNP [dm6]	G	A	2.607e^-4	0.993	INTRON sbb	TF binding site BDTNP1_TFBS_twi
X	11780353	X_11780353_SNP [dm3] X_11886320_SNP [dm6]	C	T	2.611e^-4	0.993	UPSTREAM SelG INTRON CG10353
2R	20295295	2R_20295295_SNP [dm3] 2R_24407772_SNP [dm6]	G	C	2.623e^-4	0.993	INTRON SerT
2L	6520693	2L_6520693_SNP [dm3] 2L_6520693_SNP [dm6]	C	T	2.628e^-4	0.993	INTRON CG31637
2R	16146192	2R_16146192_SNP [dm3] 2R_20258687_SNP [dm6]	C	T	2.633e^-4	0.993	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7241473	2L_7241473_SNP [dm3] 2L_7241473_SNP [dm6]	T	G	2.638e^-4	0.993	UPSTREAM Ndae1 INTRON Ndae1
3R	9084900	3R_9084900_SNP [dm3] 3R_13259178_SNP [dm6]	A	T	2.639e^-4	0.993	UPSTREAM Ace INTRON Ace	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5070096	3R_5070096_INS [dm3] 3R_9244374_INS [dm6]	C	CTTCCTCATC	2.640e^-4	0.993	CODON_INSERTION ird1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11053587	2R_11053587_SNP [dm3] 2R_15166082_SNP [dm6]	C	T	2.646e^-4	0.993	INTRON igl
2L	20560484	2L_20560484_SNP [dm3] 2L_20560484_SNP [dm6]	T	A	2.646e^-4	0.993	INTERGENIC
2R	9239461	2R_9239461_SNP [dm3] 2R_13351956_SNP [dm6]	G	C	2.647e^-4	0.993	INTRON CR44206	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12436037	3L_12436037_SNP [dm3] 3L_12442937_SNP [dm6]	A	G	2.650e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo
3R	20460249	3R_20460249_SNP [dm3] 3R_24634527_SNP [dm6]	A	C	2.655e^-4	0.993	UTR_3_PRIME atl DOWNSTREAM CG43222 & 1 other
3R	7737780	3R_7737780_SNP [dm3] 3R_11912058_SNP [dm6]	T	A	2.667e^-4	0.993	INTRON Cad87A
3R	14478731	3R_14478731_SNP [dm3] 3R_18653009_SNP [dm6]	C	G	2.670e^-4	0.993	NON_SYNONYMOUS_CODING CG31224	TF binding site mE1_TFBS_cad
2R	18304357	2R_18304357_SNP [dm3] 2R_22416852_SNP [dm6]	C	T	2.683e^-4	0.993	SYNONYMOUS_CODING qkr58E-2 UPSTREAM CR45152	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10695694	3R_10695694_SNP [dm3] 3R_14869972_SNP [dm6]	C	A	2.692e^-4	0.993	INTRON btsz
3R	20776910	3R_20776910_SNP [dm3] 3R_24951188_SNP [dm6]	T	C	2.696e^-4	0.993	INTERGENIC
3R	9167227	3R_9167227_SNP [dm3] 3R_13341505_SNP [dm6]	A	T	2.697e^-4	0.993	INTRON PK2-R1
3R	22020489	3R_22020489_SNP [dm3] 3R_26194767_SNP [dm6]	G	A	2.706e^-4	0.993	UPSTREAM CR44320 INTERGENIC	TF binding site mE1_TFBS_inv
2R	16905935	2R_16905935_SNP [dm3] 2R_21018430_SNP [dm6]	A	T	2.708e^-4	0.993	UPSTREAM CG3295 & 1 other INTRON RIC-3
2L	17861474	2L_17861474_SNP [dm3] 2L_17861474_SNP [dm6]	G	C	2.727e^-4	0.993	INTRON CadN2
3L	612913	3L_612913_SNP [dm3] 3L_612913_SNP [dm6]	A	G	2.735e^-4	0.993	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	17946655	2R_17946655_SNP [dm3] 2R_22059150_SNP [dm6]	T	C	2.739e^-4	0.993	UTR_3_PRIME CG13501	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7902273	2L_7902273_SNP [dm3] 2L_7902273_SNP [dm6]	T	C	2.742e^-4	0.993	INTRON Snoo
X	12056863	X_12056863_SNP [dm3] X_12162830_SNP [dm6]	G	A	2.752e^-4	0.993	INTRON Ten-a
3R	4583622	3R_4583622_SNP [dm3] 3R_8757900_SNP [dm6]	T	G	2.758e^-4	0.993	INTRON CG11768 & 1 other
3R	16307040	3R_16307040_SNP [dm3] 3R_20481318_SNP [dm6]	G	A	2.758e^-4	0.993	UTR_5_PRIME Gfrl INTRON Gfrl
2L	5021759	2L_5021759_SNP [dm3] 2L_5021759_SNP [dm6]	C	A	2.759e^-4	0.993	INTRON vkg
2L	10941641	2L_10941641_SNP [dm3] 2L_10941641_SNP [dm6]	C	T	2.762e^-4	0.993	DOWNSTREAM CR44492 INTRON dpr2
3R	18849321	3R_18849321_SNP [dm3] 3R_23023599_SNP [dm6]	G	A	2.763e^-4	0.993	INTRON lmd	TF binding site BDTNP1_TFBS_twi
2R	16905937	2R_16905937_SNP [dm3] 2R_21018432_SNP [dm6]	A	T	2.767e^-4	0.993	UPSTREAM CG3295 & 1 other INTRON RIC-3
3R	16289328	3R_16289328_DEL [dm3] 3R_20463606_DEL [dm6]	CGT	C	2.772e^-4	0.993	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl
2L	4418930	2L_4418930_SNP [dm3] 2L_4418930_SNP [dm6]	A	C	2.777e^-4	0.993	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	7372675	2L_7372675_SNP [dm3] 2L_7372675_SNP [dm6]	A	G	2.779e^-4	0.993	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	610695	3L_610695_SNP [dm3] 3L_610695_SNP [dm6]	G	C	2.800e^-4	0.993	INTERGENIC
2L	12429596	2L_12429596_SNP [dm3] 2L_12429596_SNP [dm6]	C	T	2.802e^-4	0.993	NON_SYNONYMOUS_CODING CG6388 DOWNSTREAM CG5435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4589048	3R_4589048_SNP [dm3] 3R_8763326_SNP [dm6]	T	G	2.810e^-4	0.993	INTRON CG11768 & 1 other
3R	2449169	3R_2449169_SNP [dm3] 3R_6623447_SNP [dm6]	G	A	2.810e^-4	0.993	INTERGENIC
3R	9137396	3R_9137396_SNP [dm3] 3R_13311674_SNP [dm6]	T	A	2.828e^-4	0.993	SYNONYMOUS_CODING CG32473
3R	9172788	3R_9172788_SNP [dm3] 3R_13347066_SNP [dm6]	T	C	2.837e^-4	0.993	INTERGENIC
2L	8713791	2L_8713791_SNP [dm3] 2L_8713791_SNP [dm6]	A	C	2.841e^-4	0.993	INTRON raw
3R	27802287	3R_27802287_SNP [dm3] 3R_31976565_SNP [dm6]	A	C	2.843e^-4	0.993	INTRON heph	TF binding site BDTNP1_TFBS_twi
2R	14184909	2R_14184909_SNP [dm3] 2R_18297404_SNP [dm6]	T	C	2.847e^-4	0.993	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3L	15695353	3L_15695353_SNP [dm3] 3L_15702253_SNP [dm6]	A	G	2.847e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	15438952	X_15438952_SNP [dm3] X_15544919_SNP [dm6]	C	G	2.849e^-4	0.993	INTRON Ac13E
X	22370533	X_22370533_SNP [dm3] X_22968697_SNP [dm6]	C	T	2.849e^-4	0.993	INTERGENIC
3L	10881027	3L_10881027_SNP [dm3] 3L_10887927_SNP [dm6]	T	A	2.851e^-4	0.993	INTERGENIC
3R	9155818	3R_9155818_DEL [dm3] 3R_13330096_DEL [dm6]	CAT	C	2.854e^-4	0.993	INTRON PK2-R2
3R	14663621	3R_14663621_SNP [dm3] 3R_18837899_SNP [dm6]	A	G	2.857e^-4	0.993	INTRON CG18208
2L	9836335	2L_9836335_DEL [dm3] 2L_9836335_DEL [dm6]	ATTGAT	A	2.865e^-4	0.993	INTRON nAChRalpha6
3L	4392762	3L_4392762_SNP [dm3] 3L_4392762_SNP [dm6]	G	A	2.877e^-4	0.993	INTRON slow
3R	10695773	3R_10695773_SNP [dm3] 3R_14870051_SNP [dm6]	T	A	2.895e^-4	0.993	INTRON btsz
3R	10695774	3R_10695774_SNP [dm3] 3R_14870052_SNP [dm6]	A	G	2.895e^-4	0.993	INTRON btsz
2L	7902201	2L_7902201_SNP [dm3] 2L_7902201_SNP [dm6]	G	C	2.901e^-4	0.993	INTRON Snoo
3L	14136400	3L_14136400_SNP [dm3] 3L_14143300_SNP [dm6]	A	C	2.903e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs
3L	3467523	3L_3467523_SNP [dm3] 3L_3467523_SNP [dm6]	A	C	2.903e^-4	0.993	STOP_LOST CycJ SYNONYMOUS_CODING CycJ DOWNSTREAM CG14971
2L	10319602	2L_10319602_SNP [dm3] 2L_10319602_SNP [dm6]	A	G	2.916e^-4	0.993	INTRON CG5381
X	17366209	X_17366209_SNP [dm3] X_17472176_SNP [dm6]	A	T	2.918e^-4	0.993	INTRON CG43658
2R	18460852	2R_18460852_SNP [dm3] 2R_22573347_SNP [dm6]	C	T	2.920e^-4	0.993	INTRON dnr1
X	7222096	X_7222096_SNP [dm3] X_7328063_SNP [dm6]	A	G	2.934e^-4	0.993	UTR_3_PRIME Dok UPSTREAM CG18155 INTRON CR44357 & 1 other
2R	9354474	2R_9354474_SNP [dm3] 2R_13466969_SNP [dm6]	A	T	2.934e^-4	0.993	INTRON arr
2R	8259853	2R_8259853_SNP [dm3] 2R_12372348_SNP [dm6]	C	T	2.939e^-4	0.993	NON_SYNONYMOUS_CODING CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17471647	2R_17471647_SNP [dm3] 2R_21584142_SNP [dm6]	G	A	2.941e^-4	0.993	NON_SYNONYMOUS_CODING CG30222
3R	14172395	3R_14172395_SNP [dm3] 3R_18346673_SNP [dm6]	A	G	2.942e^-4	0.993	INTRON CG15803
3R	14040169	3R_14040169_SNP [dm3] 3R_18214447_SNP [dm6]	C	A	2.947e^-4	0.993	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3467906	3L_3467906_SNP [dm3] 3L_3467906_SNP [dm6]	C	A	2.959e^-4	0.993	UTR_3_PRIME CycJ DOWNSTREAM CG14971
2R	16172129	2R_16172129_SNP [dm3] 2R_20284624_SNP [dm6]	A	G	2.962e^-4	0.993	SYNONYMOUS_CODING CG16868
3L	12931618	3L_12931618_SNP [dm3] 3L_12938518_SNP [dm6]	A	T	2.967e^-4	0.993	INTERGENIC
3L	12726310	3L_12726310_INS [dm3] 3L_12733210_INS [dm6]	T	TCATGG	2.969e^-4	0.993	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11151841	X_11151841_SNP [dm3] X_11257808_SNP [dm6]	G	A	2.984e^-4	0.993	INTRON CG44422	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14414355	2R_14414355_SNP [dm3] 2R_18526850_SNP [dm6]	C	T	2.987e^-4	0.993	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15037628	3L_15037628_DEL [dm3] 3L_15044528_DEL [dm6]	TA	T	2.990e^-4	0.993	UPSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9803188	2R_9803188_SNP [dm3] 2R_13915683_SNP [dm6]	T	A	2.993e^-4	0.993	INTRON shot
X	16076552	X_16076552_SNP [dm3] X_16182519_SNP [dm6]	G	A	3.004e^-4	0.993	INTERGENIC
3R	23569249	3R_23569249_SNP [dm3] 3R_27743527_SNP [dm6]	T	A	3.007e^-4	0.993	INTRON Ets98B
3L	12725885	3L_12725885_SNP [dm3] 3L_12732785_SNP [dm6]	C	A	3.010e^-4	0.993	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	13817127	X_13817127_SNP [dm3] X_13923094_SNP [dm6]	C	T	3.026e^-4	0.993	INTRON mamo
X	3701147	X_3701147_SNP [dm3] X_3807114_SNP [dm6]	T	G	3.026e^-4	0.993	INTRON fd3F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8862525	2R_8862525_DEL [dm3] 2R_12975020_DEL [dm6]	CACCC	C	3.026e^-4	0.993	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7220072	3R_7220072_SNP [dm3] 3R_11394350_SNP [dm6]	C	T	3.028e^-4	0.993	UTR_3_PRIME pros
2R	9228529	2R_9228529_SNP [dm3] 2R_13341024_SNP [dm6]	C	T	3.030e^-4	0.993	INTRON CR44206	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18371243	3R_18371243_SNP [dm3] 3R_22545521_SNP [dm6]	A	C	3.032e^-4	0.993	INTRON AdipoR
3R	1280959	3R_1280959_SNP [dm3] 3R_5455237_SNP [dm6]	A	T	3.039e^-4	0.993	INTRON CG14669	TF binding site mE1_TFBS_cad
X	16076807	X_16076807_SNP [dm3] X_16182774_SNP [dm6]	T	A	3.047e^-4	0.993	INTERGENIC
2R	16451648	2R_16451648_SNP [dm3] 2R_20564143_SNP [dm6]	A	G	3.054e^-4	0.993	SYNONYMOUS_CODING qsm
2L	18822067	2L_18822067_SNP [dm3] 2L_18822067_SNP [dm6]	C	T	3.057e^-4	0.993	SYNONYMOUS_CODING CG17324
2R	7119063	2R_7119063_SNP [dm3] 2R_11231558_SNP [dm6]	A	T	3.057e^-4	0.993	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	15913053	3R_15913053_SNP [dm3] 3R_20087331_SNP [dm6]	G	T	3.059e^-4	0.993	INTERGENIC
3L	12384306	3L_12384306_SNP [dm3] 3L_12391206_SNP [dm6]	C	T	3.059e^-4	0.993	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8174290	2R_8174290_SNP [dm3] 2R_12286785_SNP [dm6]	T	C	3.068e^-4	0.993	INTRON CG42700
2R	11494640	2R_11494640_SNP [dm3] 2R_15607135_SNP [dm6]	T	C	3.081e^-4	0.993	INTERGENIC
2L	19645365	2L_19645365_DEL [dm3] 2L_19645365_DEL [dm6]	TATTTC	T	3.082e^-4	0.993	INTRON Lar
3R	9190514	3R_9190514_DEL [dm3] 3R_13364792_DEL [dm6]	TT	T	3.088e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9190520	3R_9190520_DEL [dm3] 3R_13364798_DEL [dm6]	AACGTTTTAG	A	3.088e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16042728	3L_16042728_SNP [dm3] 3L_16049628_SNP [dm6]	G	C	3.090e^-4	0.993	INTRON th EXON CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9211619	2L_9211619_SNP [dm3] 2L_9211619_SNP [dm6]	G	C	3.092e^-4	0.993	INTRON tai	TF binding site BDTNP1_TFBS_dl
3L	18434728	3L_18434728_SNP [dm3] 3L_18441628_SNP [dm6]	G	A	3.094e^-4	0.993	EXON CR43280
3R	16522090	3R_16522090_INS [dm3] 3R_20696368_INS [dm6]	G	GAGAGAAAAG	3.096e^-4	0.993	INTRON Oamb
X	9768170	X_9768170_SNP [dm3] X_9874137_SNP [dm6]	G	A	3.096e^-4	0.993	UPSTREAM CG32695 DOWNSTREAM CG15247 INTERGENIC
X	12590491	X_12590491_SNP [dm3] X_12696458_SNP [dm6]	A	G	3.100e^-4	0.993	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4007581	2L_4007581_SNP [dm3] 2L_4007581_SNP [dm6]	G	A	3.111e^-4	0.993	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2L	9525765	2L_9525765_SNP [dm3] 2L_9525765_SNP [dm6]	G	A	3.113e^-4	0.993	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	9177432	3R_9177432_SNP [dm3] 3R_13351710_SNP [dm6]	A	T	3.114e^-4	0.993	INTERGENIC
3R	23469961	3R_23469961_SNP [dm3] 3R_27644239_SNP [dm6]	T	G	3.125e^-4	0.993	INTRON tau
3L	10769513	3L_10769513_SNP [dm3] 3L_10776413_SNP [dm6]	T	C	3.140e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14184870	2R_14184870_SNP [dm3] 2R_18297365_SNP [dm6]	G	C	3.144e^-4	0.993	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3L	12733105	3L_12733105_SNP [dm3] 3L_12740005_SNP [dm6]	G	A	3.144e^-4	0.993	NON_SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14405280	3L_14405280_SNP [dm3] 3L_14412180_SNP [dm6]	C	A	3.148e^-4	0.993	NON_SYNONYMOUS_CODING CG3919 DOWNSTREAM bbg INTRON CG3919
3R	9062139	3R_9062139_SNP [dm3] 3R_13236417_SNP [dm6]	T	A	3.153e^-4	0.993	INTRON Ace
2L	1909633	2L_1909633_SNP [dm3] 2L_1909633_SNP [dm6]	A	T	3.153e^-4	0.993	INTRON CG7337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	8437892	2R_8437892_SNP [dm3] 2R_12550387_SNP [dm6]	T	G	3.158e^-4	0.993	INTRON fra	TF binding site mE1_TFBS_inv
2R	17977931	2R_17977931_DEL [dm3] 2R_22090426_DEL [dm6]	CGTATTTT	A	3.160e^-4	0.993	FRAME_SHIFT CG43393 SPLICE_SITE_DONOR CG43393 SPLICE_SITE_REGION CG43393 DOWNSTREAM CG44163 INTRON CG43393
2L	7902270	2L_7902270_SNP [dm3] 2L_7902270_SNP [dm6]	C	A	3.165e^-4	0.993	INTRON Snoo
2R	16905979	2R_16905979_SNP [dm3] 2R_21018474_SNP [dm6]	C	T	3.172e^-4	0.993	UPSTREAM RIC-3 INTRON RIC-3
3R	15003084	3R_15003084_SNP [dm3] 3R_19177362_SNP [dm6]	A	G	3.190e^-4	0.993	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9129506	3R_9129506_SNP [dm3] 3R_13303784_SNP [dm6]	G	T	3.190e^-4	0.993	UTR_3_PRIME CG43208 UPSTREAM CG32473 INTRON CG32473
3R	9185556	3R_9185556_SNP [dm3] 3R_13359834_SNP [dm6]	T	C	3.194e^-4	0.993	INTERGENIC
3L	12442829	3L_12442829_SNP [dm3] 3L_12449729_SNP [dm6]	T	A	3.217e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4429688	2L_4429688_SNP [dm3] 2L_4429688_SNP [dm6]	G	A	3.224e^-4	0.993	INTRON CG15431
2R	18376926	2R_18376926_SNP [dm3] 2R_22489421_SNP [dm6]	T	C	3.234e^-4	0.993	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12354637	X_12354637_SNP [dm3] X_12460604_SNP [dm6]	G	T	3.258e^-4	0.993	INTRON Rab40
3L	4795745	3L_4795745_SNP [dm3] 3L_4795745_SNP [dm6]	C	T	3.267e^-4	0.993	INTRON RhoGEF64C
X	17837800	X_17837800_SNP [dm3] X_17943767_SNP [dm6]	T	A	3.268e^-4	0.993	INTRON Sh
3R	17100235	3R_17100235_SNP [dm3] 3R_21274513_SNP [dm6]	A	G	3.281e^-4	0.993	UTR_3_PRIME CG3301 UPSTREAM CG3308 DOWNSTREAM CG3301
3R	2856491	3R_2856491_SNP [dm3] 3R_7030769_SNP [dm6]	T	C	3.281e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16147971	2R_16147971_SNP [dm3] 2R_20260466_SNP [dm6]	G	A	3.288e^-4	0.993	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9190498	3R_9190498_SNP [dm3] 3R_13364776_SNP [dm6]	A	T	3.293e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19204528	2R_19204528_SNP [dm3] 2R_23317005_SNP [dm6]	G	A	3.299e^-4	0.993	INTERGENIC
X	17443899	X_17443899_SNP [dm3] X_17549866_SNP [dm6]	A	C	3.307e^-4	0.993	INTRON CG43658
2L	8317289	2L_8317289_SNP [dm3] 2L_8317289_SNP [dm6]	A	C	3.321e^-4	0.993	SYNONYMOUS_CODING mtsh UTR_3_PRIME mtsh DOWNSTREAM CG7806	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20434443	3R_20434443_SNP [dm3] 3R_24608721_SNP [dm6]	C	T	3.323e^-4	0.993	INTRON mld
3L	15392798	3L_15392798_SNP [dm3] 3L_15399698_SNP [dm6]	A	T	3.325e^-4	0.993	INTERGENIC
2L	9836362	2L_9836362_SNP [dm3] 2L_9836362_SNP [dm6]	G	A	3.330e^-4	0.993	INTRON nAChRalpha6
2L	13171716	2L_13171716_SNP [dm3] 2L_13171716_SNP [dm6]	T	C	3.334e^-4	0.993	INTRON Sfmbt
X	17729837	X_17729837_SNP [dm3] X_17835804_SNP [dm6]	C	T	3.337e^-4	0.993	INTRON CG6398
2L	19650440	2L_19650440_SNP [dm3] 2L_19650440_SNP [dm6]	C	A	3.338e^-4	0.993	INTRON Lar
3L	1940878	3L_1940878_SNP [dm3] 3L_1940878_SNP [dm6]	T	G	3.341e^-4	0.993	UPSTREAM Mfap1 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	18299161	2R_18299161_SNP [dm3] 2R_22411656_SNP [dm6]	T	A	3.343e^-4	0.993	UPSTREAM Mes4 & 1 other DOWNSTREAM qkr58E-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
2L	5793375	2L_5793375_SNP [dm3] 2L_5793375_SNP [dm6]	C	T	3.345e^-4	0.993	INTRON CG9171
3L	12043204	3L_12043204_SNP [dm3] 3L_12050104_SNP [dm6]	G	C	3.349e^-4	0.993	INTRON rols
3L	15794720	3L_15794720_SNP [dm3] 3L_15801620_SNP [dm6]	A	G	3.350e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9020261	3R_9020261_SNP [dm3] 3R_13194539_SNP [dm6]	G	A	3.355e^-4	0.993	INTERGENIC
3R	9062076	3R_9062076_SNP [dm3] 3R_13236354_SNP [dm6]	G	T	3.359e^-4	0.993	INTRON Ace
3R	15003401	3R_15003401_SNP [dm3] 3R_19177679_SNP [dm6]	G	A	3.369e^-4	0.993	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19625941	3L_19625941_SNP [dm3] 3L_19632841_SNP [dm6]	C	T	3.381e^-4	0.993	UTR_5_PRIME wnd INTRON wnd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15913012	3R_15913012_SNP [dm3] 3R_20087290_SNP [dm6]	T	A	3.385e^-4	0.993	INTERGENIC
X	9334891	X_9334891_SNP [dm3] X_9440858_SNP [dm6]	C	T	3.389e^-4	0.993	INTRON mgl
3R	13202518	3R_13202518_SNP [dm3] 3R_17376796_SNP [dm6]	T	C	3.389e^-4	0.993	INTRON Brf
3L	12726313	3L_12726313_INS [dm3] 3L_12733213_INS [dm6]	T	TC	3.401e^-4	0.993	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16848641	2R_16848641_SNP [dm3] 2R_20961136_SNP [dm6]	A	G	3.404e^-4	0.993	UPSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8720563	2L_8720563_SNP [dm3] 2L_8720563_SNP [dm6]	A	G	3.407e^-4	0.993	INTRON raw
2L	21832641	2L_21832641_SNP [dm3] 2L_21832641_SNP [dm6]	T	A	3.407e^-4	0.993	INTRON tsh	TF binding site BDTNP1_TFBS_twi
X	9768212	X_9768212_SNP [dm3] X_9874179_SNP [dm6]	A	T	3.409e^-4	0.993	UPSTREAM CG32695 DOWNSTREAM CG15247 INTERGENIC
2L	6520613	2L_6520613_SNP [dm3] 2L_6520613_SNP [dm6]	G	A	3.409e^-4	0.993	INTRON CG31637
3L	5735996	3L_5735996_SNP [dm3] 3L_5742896_SNP [dm6]	A	C	3.417e^-4	0.993	UTR_3_PRIME sif INTRON sif
3L	18408264	3L_18408264_SNP [dm3] 3L_18415164_SNP [dm6]	C	G	3.420e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15239757	2L_15239757_INS [dm3] 2L_15239757_INS [dm6]	A	AA	3.420e^-4	0.993	INTRON ZnT35C
3R	13334815	3R_13334815_SNP [dm3] 3R_17509093_SNP [dm6]	G	C	3.428e^-4	0.993	INTERGENIC
2R	13270260	2R_13270260_SNP [dm3] 2R_17382755_SNP [dm6]	G	T	3.429e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3528628	3L_3528628_SNP [dm3] 3L_3528628_SNP [dm6]	A	G	3.432e^-4	0.993	INTRON Eip63E
3L	19631473	3L_19631473_SNP [dm3] 3L_19638373_SNP [dm6]	G	A	3.432e^-4	0.993	UTR_3_PRIME CG8786
3R	18505141	3R_18505141_SNP [dm3] 3R_22679419_SNP [dm6]	C	T	3.449e^-4	0.993	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9190443	3R_9190443_SNP [dm3] 3R_13364721_SNP [dm6]	A	C	3.452e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	19630604	2L_19630604_SNP [dm3] 2L_19630604_SNP [dm6]	C	T	3.452e^-4	0.993	INTRON Lar
X	17638465	X_17638465_SNP [dm3] X_17744432_SNP [dm6]	G	A	3.452e^-4	0.993	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
3R	18380006	3R_18380006_SNP [dm3] 3R_22554284_SNP [dm6]	C	T	3.458e^-4	0.993	UPSTREAM bond INTRON bond
2L	8046565	2L_8046565_SNP [dm3] 2L_8046565_SNP [dm6]	T	C	3.462e^-4	0.993	SYNONYMOUS_CODING CG7466
3L	13419895	3L_13419895_SNP [dm3] 3L_13426795_SNP [dm6]	A	G	3.481e^-4	0.993	UPSTREAM CG14105 INTERGENIC
2L	8000295	2L_8000295_SNP [dm3] 2L_8000295_SNP [dm6]	A	G	3.513e^-4	0.993	DOWNSTREAM Sirup INTRON Wwox	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18084228	3R_18084228_SNP [dm3] 3R_22258506_SNP [dm6]	G	A	3.516e^-4	0.993	INTRON SKIP
3L	7038322	3L_7038322_SNP [dm3] 3L_7045222_SNP [dm6]	A	C	3.532e^-4	0.993	SYNONYMOUS_CODING Mp INTRON Mp
3L	9085354	3L_9085354_SNP [dm3] 3L_9092254_SNP [dm6]	C	A	3.535e^-4	0.993	UPSTREAM CG32032 DOWNSTREAM Tequila INTERGENIC
2R	8176486	2R_8176486_SNP [dm3] 2R_12288981_SNP [dm6]	G	A	3.546e^-4	0.993	INTRON CG42700
3R	9062301	3R_9062301_SNP [dm3] 3R_13236579_SNP [dm6]	G	A	3.552e^-4	0.993	INTRON Ace
3L	10698957	3L_10698957_SNP [dm3] 3L_10705857_SNP [dm6]	C	T	3.553e^-4	0.993	INTERGENIC
3L	18416695	3L_18416695_SNP [dm3] 3L_18423595_SNP [dm6]	T	C	3.555e^-4	0.993	INTERGENIC
3L	10725070	3L_10725070_DEL [dm3] 3L_10731970_DEL [dm6]	TCGTTAAATTAAAT...	T	3.560e^-4	0.993	INTERGENIC
2L	12904306	2L_12904306_SNP [dm3] 2L_12904306_SNP [dm6]	C	T	3.563e^-4	0.993	INTERGENIC
2R	9492451	2R_9492451_SNP [dm3] 2R_13604946_SNP [dm6]	A	G	3.569e^-4	0.993	SYNONYMOUS_CODING CG34236
2L	12904166	2L_12904166_SNP [dm3] 2L_12904166_SNP [dm6]	T	A	3.571e^-4	0.993	INTERGENIC
X	7071334	X_7071334_SNP [dm3] X_7177301_SNP [dm6]	G	A	3.586e^-4	0.993	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8836061	2R_8836061_SNP [dm3] 2R_12948556_SNP [dm6]	A	T	3.597e^-4	0.993	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11304595	3L_11304595_SNP [dm3] 3L_11311495_SNP [dm6]	C	T	3.606e^-4	0.993	UPSTREAM CG7573 INTERGENIC
2L	13602340	2L_13602340_SNP [dm3] 2L_13602340_SNP [dm6]	C	T	3.615e^-4	0.993	INTRON kuz
3R	9222347	3R_9222347_SNP [dm3] 3R_13396625_SNP [dm6]	A	T	3.621e^-4	0.993	DOWNSTREAM CG14374 INTERGENIC
2R	8329676	2R_8329676_SNP [dm3] 2R_12442171_SNP [dm6]	G	A	3.629e^-4	0.993	UPSTREAM CG30334 INTRON Dyb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18553973	3L_18553973_SNP [dm3] 3L_18560873_SNP [dm6]	T	A	3.639e^-4	0.993	INTRON AstC-R1
3R	9045666	3R_9045666_SNP [dm3] 3R_13219944_SNP [dm6]	T	C	3.641e^-4	0.993	NON_SYNONYMOUS_CODING CG8476
2R	6314235	2R_6314235_DEL [dm3] 2R_10426730_DEL [dm6]	TGAACGCTGCTATGCGACTT...	T	3.645e^-4	0.993	DOWNSTREAM CG12896 INTERGENIC	transposable element FlyBase
2R	18299154	2R_18299154_SNP [dm3] 2R_22411649_SNP [dm6]	G	A	3.654e^-4	0.993	UPSTREAM Mes4 & 1 other DOWNSTREAM qkr58E-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	16521629	3R_16521629_INS [dm3] 3R_20695907_INS [dm6]	A	ACATA	3.664e^-4	0.993	INTRON Oamb
3L	7994531	3L_7994531_SNP [dm3] 3L_8001431_SNP [dm6]	C	T	3.666e^-4	0.993	INTRON nmo
3L	14314646	3L_14314646_DEL [dm3] 3L_14321546_DEL [dm6]	GTA	G	3.666e^-4	0.993	INTRON fz	TF binding site mE1_TFBS_inv
3R	16293177	3R_16293177_SNP [dm3] 3R_20467455_SNP [dm6]	T	G	3.667e^-4	0.993	INTRON Gfrl
3R	15912808	3R_15912808_SNP [dm3] 3R_20087086_SNP [dm6]	A	C	3.670e^-4	0.993	INTERGENIC
3R	9038169	3R_9038169_SNP [dm3] 3R_13212447_SNP [dm6]	G	T	3.672e^-4	0.993	INTRON CG8483
3R	19066561	3R_19066561_SNP [dm3] 3R_23240839_SNP [dm6]	G	C	3.673e^-4	0.993	UPSTREAM CG4467 INTRON CG4467
2R	14414428	2R_14414428_SNP [dm3] 2R_18526923_SNP [dm6]	C	G	3.675e^-4	0.993	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5561268	2L_5561268_SNP [dm3] 2L_5561268_SNP [dm6]	C	T	3.676e^-4	0.993	SYNONYMOUS_CODING GluRIIB
3R	18849401	3R_18849401_SNP [dm3] 3R_23023679_SNP [dm6]	C	A	3.678e^-4	0.993	INTRON lmd	TF binding site BDTNP1_TFBS_twi
2L	18367246	2L_18367246_INS [dm3] 2L_18367246_INS [dm6]	A	AC	3.679e^-4	0.993	INTRON Fas3
3L	12345912	3L_12345912_SNP [dm3] 3L_12352812_SNP [dm6]	T	C	3.680e^-4	0.993	INTERGENIC
3R	9673165	3R_9673165_SNP [dm3] 3R_13847443_SNP [dm6]	G	A	3.681e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16660813	3R_16660813_SNP [dm3] 3R_20835091_SNP [dm6]	A	G	3.685e^-4	0.993	INTRON Synd
3R	17084910	3R_17084910_SNP [dm3] 3R_21259188_SNP [dm6]	T	A	3.691e^-4	0.993	INTRON ETHR
2R	15694413	2R_15694413_SNP [dm3] 2R_19806908_SNP [dm6]	T	C	3.696e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9207038	3R_9207038_SNP [dm3] 3R_13381316_SNP [dm6]	C	A	3.698e^-4	0.993	NON_SYNONYMOUS_CODING CG8870 UTR_3_PRIME mRpS21 UPSTREAM Droj2 DOWNSTREAM mRpS21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	16529708	2L_16529708_SNP [dm3] 2L_16529708_SNP [dm6]	C	A	3.712e^-4	0.993	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2R	11005230	2R_11005230_SNP [dm3] 2R_15117725_SNP [dm6]	G	T	3.715e^-4	0.993	INTRON chn	TF binding site BDTNP1_TFBS_dl
3L	14548689	3L_14548689_SNP [dm3] 3L_14555589_SNP [dm6]	G	A	3.739e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	12865993	X_12865993_SNP [dm3] X_12971960_SNP [dm6]	C	T	3.739e^-4	0.993	SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	16027486	3L_16027486_SNP [dm3] 3L_16034386_SNP [dm6]	A	G	3.743e^-4	0.993	UPSTREAM CG42538 DOWNSTREAM CG42716 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9058799	3R_9058799_SNP [dm3] 3R_13233077_SNP [dm6]	G	A	3.743e^-4	0.993	SYNONYMOUS_CODING Ace
2R	6253383	2R_6253383_SNP [dm3] 2R_10365878_SNP [dm6]	C	T	3.760e^-4	0.993	UPSTREAM CG42732 INTRON CG42732
3R	9134050	3R_9134050_SNP [dm3] 3R_13308328_SNP [dm6]	A	C	3.766e^-4	0.993	INTRON CG32473
3R	9210682	3R_9210682_SNP [dm3] 3R_13384960_SNP [dm6]	G	A	3.783e^-4	0.993	UTR_3_PRIME Droj2 DOWNSTREAM CG9799
3R	9419701	3R_9419701_DEL [dm3] 3R_13593979_DEL [dm6]	CC	C	3.784e^-4	0.993	INTERGENIC
X	14321465	X_14321465_SNP [dm3] X_14427432_SNP [dm6]	T	A	3.797e^-4	0.993	INTRON dpr8
2R	14118530	2R_14118530_SNP [dm3] 2R_18231025_SNP [dm6]	T	C	3.803e^-4	0.993	EXON CR45311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14414525	2R_14414525_SNP [dm3] 2R_18527020_SNP [dm6]	C	A	3.812e^-4	0.993	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5086242	2L_5086242_SNP [dm3] 2L_5086242_SNP [dm6]	C	T	3.813e^-4	0.993	INTRON pgant5
2L	3729325	2L_3729325_SNP [dm3] 2L_3729325_SNP [dm6]	A	T	3.821e^-4	0.993	DOWNSTREAM Shaw INTERGENIC
2R	16514625	2R_16514625_SNP [dm3] 2R_20627120_SNP [dm6]	T	C	3.826e^-4	0.993	NON_SYNONYMOUS_CODING CG16742
3R	15001972	3R_15001972_SNP [dm3] 3R_19176250_SNP [dm6]	A	C	3.831e^-4	0.993	UPSTREAM CG14282 INTERGENIC
3L	18681087	3L_18681087_SNP [dm3] 3L_18687987_SNP [dm6]	C	T	3.840e^-4	0.993	INTERGENIC
3L	9253899	3L_9253899_SNP [dm3] 3L_9260799_SNP [dm6]	A	T	3.846e^-4	0.993	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
2L	18791081	2L_18791081_SNP [dm3] 2L_18791081_SNP [dm6]	T	A	3.847e^-4	0.993	INTRON ham
3R	15291803	3R_15291803_SNP [dm3] 3R_19466081_SNP [dm6]	T	A	3.848e^-4	0.993	INTRON Dys
3R	9087222	3R_9087222_SNP [dm3] 3R_13261500_SNP [dm6]	G	A	3.848e^-4	0.993	INTRON CG11686
2R	11409357	2R_11409357_SNP [dm3] 2R_15521852_SNP [dm6]	G	A	3.853e^-4	0.993	SYNONYMOUS_CODING Khc-73
2R	762732	2R_762732_DEL [dm3] 2R_4875227_DEL [dm6]	GCCACCCTGCGGCGATTCCA...	G	3.864e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi transposable element FlyBase
3L	18408255	3L_18408255_SNP [dm3] 3L_18415155_SNP [dm6]	C	G	3.869e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15444089	X_15444089_SNP [dm3] X_15550056_SNP [dm6]	C	G	3.873e^-4	0.993	INTRON Ac13E
2R	12113255	2R_12113255_SNP [dm3] 2R_16225750_SNP [dm6]	A	G	3.874e^-4	0.993	UPSTREAM CG15706 & 1 other INTRON CG15706
X	6933324	X_6933324_SNP [dm3] X_7039291_SNP [dm6]	C	G	3.875e^-4	0.993	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4355557	3L_4355557_SNP [dm3] 3L_4355557_SNP [dm6]	G	A	3.886e^-4	0.993	INTRON Cip4
3R	9151710	3R_9151710_DEL [dm3] 3R_13325988_DEL [dm6]	TT	A	3.888e^-4	0.993	INTERGENIC
2L	17861461	2L_17861461_SNP [dm3] 2L_17861461_SNP [dm6]	C	A	3.899e^-4	0.993	INTRON CadN2
X	14859151	X_14859151_SNP [dm3] X_14965118_SNP [dm6]	G	T	3.903e^-4	0.993	INTRON eag
2R	19369168	2R_19369168_SNP [dm3] 2R_23481645_SNP [dm6]	T	C	3.904e^-4	0.993	INTRON CG43795
X	6686889	X_6686889_SNP [dm3] X_6792856_SNP [dm6]	G	A	3.911e^-4	0.993	INTRON C3G
3R	24905104	3R_24905104_SNP [dm3] 3R_29079382_SNP [dm6]	G	T	3.913e^-4	0.993	INTRON CG11873
2R	17648607	2R_17648607_SNP [dm3] 2R_21761102_SNP [dm6]	T	G	3.913e^-4	0.993	INTERGENIC
X	16076801	X_16076801_SNP [dm3] X_16182768_SNP [dm6]	G	C	3.919e^-4	0.993	INTERGENIC
2L	8301331	2L_8301331_DEL [dm3] 2L_8301331_DEL [dm6]	TGCCGCG	T	3.921e^-4	0.993	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22755913	3R_22755913_SNP [dm3] 3R_26930191_SNP [dm6]	G	C	3.922e^-4	0.993	INTRON sda
2L	8238031	2L_8238031_SNP [dm3] 2L_8238031_SNP [dm6]	C	A	3.940e^-4	0.993	INTRON Pvr
2R	9307934	2R_9307934_SNP [dm3] 2R_13420429_SNP [dm6]	A	G	3.949e^-4	0.993	SYNONYMOUS_CODING CG42321
X	12616618	X_12616618_SNP [dm3] X_12722585_SNP [dm6]	T	G	3.958e^-4	0.993	INTRON Smr & 1 other	TF binding site mE1_TFBS_HSA
3R	21668317	3R_21668317_SNP [dm3] 3R_25842595_SNP [dm6]	A	T	3.977e^-4	0.993	UTR_3_PRIME alpha4GT2
2R	14616442	2R_14616442_SNP [dm3] 2R_18728937_SNP [dm6]	C	T	3.992e^-4	0.993	NON_SYNONYMOUS_CODING List INTRON Hs3st-A
3L	7586473	3L_7586473_SNP [dm3] 3L_7593373_SNP [dm6]	T	C	3.993e^-4	0.993	SYNONYMOUS_CODING CG33275
X	5346377	X_5346377_DEL [dm3] X_5452344_DEL [dm6]	CC	C	3.999e^-4	0.993	INTRON SPR
3R	17498510	3R_17498510_SNP [dm3] 3R_21672788_SNP [dm6]	T	A	4.000e^-4	0.993	UTR_3_PRIME CG31176
2L	7832937	2L_7832937_SNP [dm3] 2L_7832937_SNP [dm6]	A	G	4.006e^-4	0.993	UTR_3_PRIME mts DOWNSTREAM mts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27802289	3R_27802289_SNP [dm3] 3R_31976567_SNP [dm6]	T	G	4.012e^-4	0.993	INTRON heph	TF binding site BDTNP1_TFBS_twi
3L	3467448	3L_3467448_SNP [dm3] 3L_3467448_SNP [dm6]	G	A	4.019e^-4	0.993	NON_SYNONYMOUS_CODING CycJ SYNONYMOUS_CODING CycJ DOWNSTREAM CG14971
2L	18367254	2L_18367254_SNP [dm3] 2L_18367254_SNP [dm6]	G	A	4.031e^-4	0.993	INTRON Fas3
X	12640707	X_12640707_SNP [dm3] X_12746674_SNP [dm6]	C	T	4.039e^-4	0.993	SYNONYMOUS_CODING CG4004 INTRON CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
3L	13419545	3L_13419545_SNP [dm3] 3L_13426445_SNP [dm6]	G	A	4.043e^-4	0.993	SYNONYMOUS_CODING CG14105 UPSTREAM CG14106
3L	7103571	3L_7103571_SNP [dm3] 3L_7110471_SNP [dm6]	G	A	4.051e^-4	0.993	INTRON form3
2L	18921083	2L_18921083_SNP [dm3] 2L_18921083_SNP [dm6]	G	T	4.055e^-4	0.993	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11020285	3L_11020285_SNP [dm3] 3L_11027185_SNP [dm6]	C	T	4.058e^-4	0.993	SYNONYMOUS_CODING CG32079 UPSTREAM CG32081
3R	3051132	3R_3051132_SNP [dm3] 3R_7225410_SNP [dm6]	A	G	4.069e^-4	0.993	INTRON CG14608
3R	5005297	3R_5005297_SNP [dm3] 3R_9179575_SNP [dm6]	T	A	4.076e^-4	0.993	DOWNSTREAM CG11997 INTRON pum
3R	14402661	3R_14402661_SNP [dm3] 3R_18576939_SNP [dm6]	G	C	4.076e^-4	0.993	INTRON CG7694 & 1 other
3L	4795744	3L_4795744_SNP [dm3] 3L_4795744_SNP [dm6]	C	A	4.085e^-4	0.993	INTRON RhoGEF64C
2L	8168540	2L_8168540_SNP [dm3] 2L_8168540_SNP [dm6]	A	G	4.087e^-4	0.993	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24632064	3R_24632064_SNP [dm3] 3R_28806342_SNP [dm6]	A	C	4.094e^-4	0.993	UPSTREAM CheB98a INTERGENIC
2L	9130371	2L_9130371_SNP [dm3] 2L_9130371_SNP [dm6]	G	A	4.094e^-4	0.993	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
2R	14826164	2R_14826164_SNP [dm3] 2R_18938659_SNP [dm6]	A	C	4.097e^-4	0.993	INTRON sano
2R	14207190	2R_14207190_SNP [dm3] 2R_18319685_SNP [dm6]	A	T	4.099e^-4	0.993	INTRON sbb
X	2488610	X_2488610_SNP [dm3] X_2594577_SNP [dm6]	G	C	4.106e^-4	0.993	INTRON egh
2R	17227525	2R_17227525_SNP [dm3] 2R_21340020_SNP [dm6]	T	C	4.108e^-4	0.993	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1598209	2R_1598209_SNP [dm3] 2R_5710704_SNP [dm6]	A	T	4.108e^-4	0.993	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11301052	X_11301052_SNP [dm3] X_11407019_SNP [dm6]	C	A	4.112e^-4	0.993	UTR_3_PRIME dlg1
2R	18302941	2R_18302941_SNP [dm3] 2R_22415436_SNP [dm6]	T	C	4.114e^-4	0.993	UTR_5_PRIME qkr58E-1 UPSTREAM qkr58E-2 DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	9190517	3R_9190517_SNP [dm3] 3R_13364795_SNP [dm6]	T	A	4.131e^-4	0.993	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4261129	2L_4261129_SNP [dm3] 2L_4261129_SNP [dm6]	A	C	4.138e^-4	0.993	UPSTREAM CR44080 INTERGENIC
2L	9525629	2L_9525629_SNP [dm3] 2L_9525629_SNP [dm6]	A	C	4.139e^-4	0.993	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	19425305	X_19425305_SNP [dm3] X_19531272_SNP [dm6]	A	G	4.139e^-4	0.993	NON_SYNONYMOUS_CODING CG12231 DOWNSTREAM CG32532 & 1 other	TF binding site mE1_TFBS_cad
3L	17073831	3L_17073831_SNP [dm3] 3L_17080731_SNP [dm6]	A	G	4.141e^-4	0.993	INTRON Rbp6
3R	24475806	3R_24475806_SNP [dm3] 3R_28650084_SNP [dm6]	G	A	4.144e^-4	0.993	UTR_3_PRIME CG31050
2L	4082024	2L_4082024_SNP [dm3] 2L_4082024_SNP [dm6]	G	C	4.149e^-4	0.993	INTRON ed
3R	17099770	3R_17099770_SNP [dm3] 3R_21274048_SNP [dm6]	C	T	4.151e^-4	0.993	UPSTREAM CG3308 DOWNSTREAM CG3301 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17900408	2R_17900408_SNP [dm3] 2R_22012903_SNP [dm6]	C	T	4.154e^-4	0.993	INTRON CG34370
2L	21855229	2L_21855229_SNP [dm3] 2L_21855229_SNP [dm6]	G	C	4.167e^-4	0.993	EXON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17900409	2R_17900409_SNP [dm3] 2R_22012904_SNP [dm6]	G	A	4.172e^-4	0.993	INTRON CG34370
2L	1717850	2L_1717850_SNP [dm3] 2L_1717850_SNP [dm6]	C	T	4.177e^-4	0.993	INTRON Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13338166	X_13338166_SNP [dm3] X_13444133_SNP [dm6]	A	T	4.188e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14172767	3R_14172767_SNP [dm3] 3R_18347045_SNP [dm6]	G	T	4.197e^-4	0.993	INTRON CG15803
2L	19626304	2L_19626304_SNP [dm3] 2L_19626304_SNP [dm6]	T	C	4.201e^-4	0.993	INTRON Lar
3R	24901207	3R_24901207_SNP [dm3] 3R_29075485_SNP [dm6]	G	C	4.204e^-4	0.993	INTRON CG11873	TF binding site BDTNP1_TFBS_dl
3L	821420	3L_821420_SNP [dm3] 3L_821420_SNP [dm6]	A	G	4.207e^-4	0.993	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1404031	3L_1404031_INS [dm3] 3L_1404031_INS [dm6]	A	ACA	4.213e^-4	0.993	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	17099767	3R_17099767_SNP [dm3] 3R_21274045_SNP [dm6]	A	T	4.214e^-4	0.993	UPSTREAM CG3308 DOWNSTREAM CG3301 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13129911	3L_13129911_SNP [dm3] 3L_13136811_SNP [dm6]	G	A	4.235e^-4	0.993	SYNONYMOUS_CODING CG33262	TF binding site mE1_TFBS_HSA
3R	19066566	3R_19066566_SNP [dm3] 3R_23240844_SNP [dm6]	G	A	4.237e^-4	0.993	UPSTREAM CG4467 INTRON CG4467
3L	4263408	3L_4263408_SNP [dm3] 3L_4263408_SNP [dm6]	C	T	4.237e^-4	0.993	UTR_3_PRIME VhaM9.7-a UPSTREAM CG11586 & 1 other DOWNSTREAM VhaM9.7-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24257872	3R_24257872_SNP [dm3] 3R_28432150_SNP [dm6]	T	C	4.244e^-4	0.993	INTRON beat-VI
3R	17932705	3R_17932705_SNP [dm3] 3R_22106983_SNP [dm6]	C	A	4.248e^-4	0.993	INTRON CG5778
3R	22114978	3R_22114978_SNP [dm3] 3R_26289256_SNP [dm6]	G	T	4.254e^-4	0.993	INTERGENIC
2R	14090257	2R_14090257_SNP [dm3] 2R_18202752_SNP [dm6]	A	T	4.258e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9530191	3R_9530191_SNP [dm3] 3R_13704469_SNP [dm6]	T	C	4.261e^-4	0.993	SYNONYMOUS_CODING Adgf-D
2L	14353118	2L_14353118_SNP [dm3] 2L_14353118_SNP [dm6]	C	T	4.263e^-4	0.993	NON_SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad
2L	7918359	2L_7918359_SNP [dm3] 2L_7918359_SNP [dm6]	T	A	4.275e^-4	0.993	INTRON Snoo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10885716	3L_10885716_SNP [dm3] 3L_10892616_SNP [dm6]	C	T	4.276e^-4	0.993	DOWNSTREAM Cpr67Fa2 INTERGENIC
2L	9950238	2L_9950238_SNP [dm3] 2L_9950238_SNP [dm6]	G	C	4.278e^-4	0.993	DOWNSTREAM mir-87 INTERGENIC
3R	13117482	3R_13117482_SNP [dm3] 3R_17291760_SNP [dm6]	T	A	4.278e^-4	0.993	INTERGENIC
3R	9087175	3R_9087175_SNP [dm3] 3R_13261453_SNP [dm6]	T	A	4.288e^-4	0.993	INTRON CG11686
X	13823830	X_13823830_SNP [dm3] X_13929797_SNP [dm6]	G	T	4.292e^-4	0.993	INTRON mamo
3R	14557486	3R_14557486_SNP [dm3] 3R_18731764_SNP [dm6]	T	A	4.298e^-4	0.993	UTR_3_PRIME Cha UPSTREAM CG14302 DOWNSTREAM Cha
2L	5787804	2L_5787804_SNP [dm3] 2L_5787804_SNP [dm6]	A	C	4.301e^-4	0.993	INTRON CG9171
X	16275900	X_16275900_SNP [dm3] X_16381867_SNP [dm6]	G	T	4.305e^-4	0.993	DOWNSTREAM CG9992 & 1 other INTERGENIC
X	3452691	X_3452691_INS [dm3] X_3558658_INS [dm6]	C	CCCACACACACACACACCCG...	4.306e^-4	0.993	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	4.310e^-4	0.993	INTRON CG14142	TF binding site mE1_TFBS_cad
2R	16136853	2R_16136853_SNP [dm3] 2R_20249348_SNP [dm6]	C	G	4.322e^-4	0.993	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad
2R	20307107	2R_20307107_SNP [dm3] 2R_24419584_SNP [dm6]	G	T	4.327e^-4	0.993	INTRON prom	TF binding site mE1_TFBS_chinmo
2L	6018285	2L_6018285_SNP [dm3] 2L_6018285_SNP [dm6]	G	T	4.328e^-4	0.993	INTRON H2.0
3R	16307341	3R_16307341_SNP [dm3] 3R_20481619_SNP [dm6]	C	T	4.329e^-4	0.993	UTR_5_PRIME Gfrl INTRON Gfrl
2R	10523774	2R_10523774_DEL [dm3] 2R_14636269_DEL [dm6]	AG	A	4.333e^-4	0.993	INTERGENIC
2L	18806528	2L_18806528_SNP [dm3] 2L_18806528_SNP [dm6]	T	G	4.335e^-4	0.993	UPSTREAM CR43817 INTERGENIC
3L	7580925	3L_7580925_SNP [dm3] 3L_7587825_SNP [dm6]	G	A	4.346e^-4	0.993	DOWNSTREAM CG14838 & 1 other INTERGENIC
2L	20622294	2L_20622294_SNP [dm3] 2L_20622294_SNP [dm6]	G	A	4.346e^-4	0.993	INTRON CR44909
2L	9951305	2L_9951305_SNP [dm3] 2L_9951305_SNP [dm6]	C	G	4.347e^-4	0.993	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
3R	9135224	3R_9135224_SNP [dm3] 3R_13309502_SNP [dm6]	G	C	4.356e^-4	0.993	NON_SYNONYMOUS_CODING CG32473 UTR_5_PRIME CG32473 INTRON CG32473	TF binding site mE1_TFBS_HSA
3L	14131901	3L_14131901_SNP [dm3] 3L_14138801_SNP [dm6]	G	T	4.361e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3R	16643444	3R_16643444_SNP [dm3] 3R_20817722_SNP [dm6]	G	A	4.390e^-4	0.993	SYNONYMOUS_CODING CG17270
2L	13850399	2L_13850399_SNP [dm3] 2L_13850399_SNP [dm6]	G	A	4.391e^-4	0.993	DOWNSTREAM CG7968 INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14647306	3R_14647306_SNP [dm3] 3R_18821584_SNP [dm6]	A	T	4.392e^-4	0.993	INTRON CG18208
3R	19066380	3R_19066380_SNP [dm3] 3R_23240658_SNP [dm6]	G	A	4.394e^-4	0.993	UPSTREAM CG4467 INTRON CG4467
3R	7162072	3R_7162072_SNP [dm3] 3R_11336350_SNP [dm6]	C	T	4.399e^-4	0.993	INTRON pros	TF binding site BDTNP1_TFBS_dl
X	16076817	X_16076817_SNP [dm3] X_16182784_SNP [dm6]	T	C	4.413e^-4	0.993	INTERGENIC
3R	14996833	3R_14996833_SNP [dm3] 3R_19171111_SNP [dm6]	C	G	4.419e^-4	0.993	DOWNSTREAM sqz INTERGENIC
3R	17498151	3R_17498151_SNP [dm3] 3R_21672429_SNP [dm6]	A	T	4.430e^-4	0.993	UTR_3_PRIME CG31176 UPSTREAM DNApol-alpha180	TF binding site BDTNP1_TFBS_dl
3L	12021418	3L_12021418_SNP [dm3] 3L_12028318_SNP [dm6]	A	T	4.436e^-4	0.993	DOWNSTREAM CR43994 INTRON rols
X	12057251	X_12057251_SNP [dm3] X_12163218_SNP [dm6]	A	T	4.441e^-4	0.993	INTRON Ten-a
2L	7878886	2L_7878886_SNP [dm3] 2L_7878886_SNP [dm6]	A	G	4.442e^-4	0.993	SYNONYMOUS_CODING spz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6439694	X_6439694_SNP [dm3] X_6545661_SNP [dm6]	T	A	4.451e^-4	0.993	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11006097	2R_11006097_SNP [dm3] 2R_15118592_SNP [dm6]	A	G	4.452e^-4	0.993	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3152333	2L_3152333_SNP [dm3] 2L_3152333_SNP [dm6]	C	G	4.454e^-4	0.993	INTRON Mad	TF binding site BDTNP1_TFBS_dl
3R	9121451	3R_9121451_SNP [dm3] 3R_13295729_SNP [dm6]	T	C	4.463e^-4	0.993	SYNONYMOUS_CODING CG8773	TF binding site mE1_TFBS_sens
2R	17696358	2R_17696358_SNP [dm3] 2R_21808853_SNP [dm6]	T	C	4.464e^-4	0.993	INTERGENIC
3R	18096248	3R_18096248_SNP [dm3] 3R_22270526_SNP [dm6]	T	C	4.464e^-4	0.993	INTRON SKIP
3R	22860926	3R_22860926_SNP [dm3] 3R_27035204_SNP [dm6]	A	T	4.485e^-4	0.993	INTRON RYa-R	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8010192	3L_8010192_SNP [dm3] 3L_8017092_SNP [dm6]	A	T	4.506e^-4	0.993	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18009157	3L_18009157_SNP [dm3] 3L_18016057_SNP [dm6]	A	C	4.523e^-4	0.993	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14984460	2R_14984460_SNP [dm3] 2R_19096955_SNP [dm6]	T	A	4.524e^-4	0.993	UPSTREAM Ir56a INTRON 5-HT1A
2L	10943864	2L_10943864_SNP [dm3] 2L_10943864_SNP [dm6]	T	C	4.526e^-4	0.993	UPSTREAM CR44492 & 1 other INTRON dpr2
3R	20460860	3R_20460860_SNP [dm3] 3R_24635138_SNP [dm6]	T	G	4.529e^-4	0.993	UTR_5_PRIME CG43222 UPSTREAM CG43222 DOWNSTREAM puf & 1 other
3R	12317104	3R_12317104_SNP [dm3] 3R_16491382_SNP [dm6]	G	C	4.534e^-4	0.993	SYNONYMOUS_CODING Cad89D
3L	19631914	3L_19631914_SNP [dm3] 3L_19638814_SNP [dm6]	T	C	4.534e^-4	0.993	UTR_3_PRIME CG8786 DOWNSTREAM CG8786 INTRON CG8786
2L	8700537	2L_8700537_SNP [dm3] 2L_8700537_SNP [dm6]	T	C	4.539e^-4	0.993	UPSTREAM Hnf4 INTRON Hnf4
3R	18371293	3R_18371293_SNP [dm3] 3R_22545571_SNP [dm6]	A	G	4.540e^-4	0.993	INTRON AdipoR
3R	17952731	3R_17952731_DEL [dm3] 3R_22127009_DEL [dm6]	TCT	T	4.540e^-4	0.993	INTRON CG42390
3R	17952737	3R_17952737_SNP [dm3] 3R_22127015_SNP [dm6]	T	G	4.540e^-4	0.993	INTRON CG42390
3R	20704756	3R_20704756_SNP [dm3] 3R_24879034_SNP [dm6]	C	T	4.547e^-4	0.993	UPSTREAM CG11089 DOWNSTREAM CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17497731	3R_17497731_SNP [dm3] 3R_21672009_SNP [dm6]	T	C	4.554e^-4	0.993	UPSTREAM DNApol-alpha180 DOWNSTREAM CG31176 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	24266764	3R_24266764_SNP [dm3] 3R_28441042_SNP [dm6]	A	T	4.555e^-4	0.993	INTRON beat-VI
X	5482444	X_5482444_SNP [dm3] X_5588411_SNP [dm6]	T	A	4.558e^-4	0.993	INTERGENIC
2L	4012840	2L_4012840_SNP [dm3] 2L_4012840_SNP [dm6]	C	G	4.558e^-4	0.993	INTERGENIC
3R	15992619	3R_15992619_SNP [dm3] 3R_20166897_SNP [dm6]	A	T	4.560e^-4	0.993	INTERGENIC
3L	18091998	3L_18091998_SNP [dm3] 3L_18098898_SNP [dm6]	T	A	4.570e^-4	0.993	INTRON CG13698
X	16162361	X_16162361_SNP [dm3] X_16268328_SNP [dm6]	G	A	4.571e^-4	0.993	SYNONYMOUS_CODING kat80
X	14954722	X_14954722_SNP [dm3] X_15060689_SNP [dm6]	G	A	4.576e^-4	0.993	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7763502	2R_7763502_SNP [dm3] 2R_11875997_SNP [dm6]	C	T	4.578e^-4	0.993	SYNONYMOUS_CODING CG13185
2L	10112639	2L_10112639_SNP [dm3] 2L_10112639_SNP [dm6]	T	C	4.589e^-4	0.993	INTRON CG44153 & 1 other
3R	8975566	3R_8975566_SNP [dm3] 3R_13149844_SNP [dm6]	T	C	4.591e^-4	0.993	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3R	7144167	3R_7144167_SNP [dm3] 3R_11318445_SNP [dm6]	C	T	4.594e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2608520	2R_2608520_SNP [dm3] 2R_6721015_SNP [dm6]	G	A	4.601e^-4	0.993	DOWNSTREAM l_2_01289 INTERGENIC
2R	17978020	2R_17978020_SNP [dm3] 2R_22090515_SNP [dm6]	G	T	4.605e^-4	0.993	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163 & 1 other
2R	11050803	2R_11050803_SNP [dm3] 2R_15163298_SNP [dm6]	G	A	4.610e^-4	0.993	INTRON igl
2L	10286130	2L_10286130_SNP [dm3] 2L_10286130_SNP [dm6]	C	T	4.612e^-4	0.993	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9192946	3L_9192946_SNP [dm3] 3L_9199846_SNP [dm6]	C	T	4.613e^-4	0.993	INTERGENIC
2R	12503523	2R_12503523_SNP [dm3] 2R_16616018_SNP [dm6]	A	G	4.620e^-4	0.993	INTRON CG5065	TF binding site mE1_TFBS_Trl
X	19296955	X_19296955_SNP [dm3] X_19402922_SNP [dm6]	T	G	4.628e^-4	0.993	INTRON kek5
2L	4429592	2L_4429592_SNP [dm3] 2L_4429592_SNP [dm6]	C	T	4.630e^-4	0.993	INTRON CG15431
2L	21887176	2L_21887176_SNP [dm3] 2L_21887176_SNP [dm6]	T	A	4.637e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20031137	3R_20031137_SNP [dm3] 3R_24205415_SNP [dm6]	C	G	4.642e^-4	0.993	INTRON twin
3R	9185636	3R_9185636_SNP [dm3] 3R_13359914_SNP [dm6]	T	A	4.644e^-4	0.993	INTERGENIC
3R	22293393	3R_22293393_SNP [dm3] 3R_26467671_SNP [dm6]	A	G	4.645e^-4	0.993	SYNONYMOUS_CODING CG5455
3R	13332020	3R_13332020_SNP [dm3] 3R_17506298_SNP [dm6]	A	G	4.645e^-4	0.993	UPSTREAM Dscam3 INTERGENIC
3L	7040169	3L_7040169_SNP [dm3] 3L_7047069_SNP [dm6]	A	T	4.650e^-4	0.993	INTRON Mp
2R	19135876	2R_19135876_SNP [dm3] 2R_23248353_SNP [dm6]	T	A	4.653e^-4	0.993	UPSTREAM RpL22-like INTERGENIC
3R	8965007	3R_8965007_SNP [dm3] 3R_13139285_SNP [dm6]	A	G	4.677e^-4	0.993	INTRON timeout & 2 others
2R	8174432	2R_8174432_SNP [dm3] 2R_12286927_SNP [dm6]	G	A	4.685e^-4	0.993	INTRON CG42700
3R	7771150	3R_7771150_SNP [dm3] 3R_11945428_SNP [dm6]	G	A	4.688e^-4	0.993	INTRON Cad87A
3L	18416929	3L_18416929_DEL [dm3] 3L_18423829_DEL [dm6]	AAC	A	4.689e^-4	0.993	INTERGENIC
3L	15380793	3L_15380793_SNP [dm3] 3L_15387693_SNP [dm6]	C	G	4.693e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15009513	3R_15009513_SNP [dm3] 3R_19183791_SNP [dm6]	T	G	4.693e^-4	0.993	INTRON CG31475
2L	14323010	2L_14323010_SNP [dm3] 2L_14323010_SNP [dm6]	A	G	4.704e^-4	0.993	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2R	11006032	2R_11006032_SNP [dm3] 2R_15118527_SNP [dm6]	T	A	4.720e^-4	0.993	INTRON chn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18829371	2R_18829371_SNP [dm3] 2R_22941848_SNP [dm6]	T	C	4.724e^-4	0.993	UPSTREAM CG42694 & 1 other INTERGENIC
2R	11005247	2R_11005247_SNP [dm3] 2R_15117742_SNP [dm6]	G	T	4.731e^-4	0.993	INTRON chn	TF binding site BDTNP1_TFBS_dl
2L	9470082	2L_9470082_SNP [dm3] 2L_9470082_SNP [dm6]	T	C	4.741e^-4	0.993	UPSTREAM CR43769 INTERGENIC
3L	12442799	3L_12442799_SNP [dm3] 3L_12449699_SNP [dm6]	C	T	4.744e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12724714	3L_12724714_SNP [dm3] 3L_12731614_SNP [dm6]	A	G	4.746e^-4	0.993	INTERGENIC
2R	7913029	2R_7913029_SNP [dm3] 2R_12025524_SNP [dm6]	C	G	4.746e^-4	0.993	UPSTREAM CG8964 DOWNSTREAM Mppe INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3700275	X_3700275_SNP [dm3] X_3806242_SNP [dm6]	C	T	4.752e^-4	0.993	INTRON fd3F
3R	9087171	3R_9087171_SNP [dm3] 3R_13261449_SNP [dm6]	A	G	4.755e^-4	0.993	INTRON CG11686
3R	9405396	3R_9405396_SNP [dm3] 3R_13579674_SNP [dm6]	C	T	4.768e^-4	0.993	INTERGENIC
X	15438939	X_15438939_SNP [dm3] X_15544906_SNP [dm6]	T	C	4.783e^-4	0.993	INTRON Ac13E
3L	3939911	3L_3939911_SNP [dm3] 3L_3939911_SNP [dm6]	C	T	4.783e^-4	0.993	UPSTREAM CR43916 INTRON CG12766
3L	8963841	3L_8963841_SNP [dm3] 3L_8970741_SNP [dm6]	G	A	4.785e^-4	0.993	SYNONYMOUS_CODING CG5026
2R	6314212	2R_6314212_SNP [dm3] 2R_10426707_SNP [dm6]	T	C	4.789e^-4	0.993	DOWNSTREAM CG12896 INTERGENIC	transposable element FlyBase
3R	15002243	3R_15002243_DEL [dm3] 3R_19176521_DEL [dm6]	CC	C	4.790e^-4	0.993	UPSTREAM CG14282 INTERGENIC
3L	15780561	3L_15780561_SNP [dm3] 3L_15787461_SNP [dm6]	G	C	4.796e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19630617	2L_19630617_SNP [dm3] 2L_19630617_SNP [dm6]	G	A	4.797e^-4	0.993	INTRON Lar
3R	22746140	3R_22746140_SNP [dm3] 3R_26920418_SNP [dm6]	A	G	4.800e^-4	0.993	INTRON sda
X	15317647	X_15317647_SNP [dm3] X_15423614_SNP [dm6]	A	G	4.812e^-4	0.993	INTRON Cngl
3L	12931627	3L_12931627_INS [dm3] 3L_12938527_INS [dm6]	T	TATTGT	4.814e^-4	0.993	INTERGENIC
3R	9232324	3R_9232324_DEL [dm3] 3R_13406602_DEL [dm6]	TC	T	4.820e^-4	0.993	INTRON yellow-e2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	17979568	2R_17979568_SNP [dm3] 2R_22092063_SNP [dm6]	C	T	4.822e^-4	0.993	SPLICE_SITE_ACCEPTOR CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_chinmo
3R	5478393	3R_5478393_SNP [dm3] 3R_9652671_SNP [dm6]	T	A	4.825e^-4	0.993	UTR_3_PRIME CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
3L	10621744	3L_10621744_DEL [dm3] 3L_10628644_DEL [dm6]	GA	C	4.843e^-4	0.993	UPSTREAM CG14151 DOWNSTREAM CG42536 INTERGENIC	TF binding site mE1_TFBS_inv
X	1945107	X_1945107_SNP [dm3] X_2051074_SNP [dm6]	T	A	4.847e^-4	0.993	UPSTREAM moody INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10474807	2L_10474807_SNP [dm3] 2L_10474807_SNP [dm6]	A	T	4.850e^-4	0.993	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12835503	3L_12835503_SNP [dm3] 3L_12842403_SNP [dm6]	C	T	4.850e^-4	0.993	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	7167749	3R_7167749_SNP [dm3] 3R_11342027_SNP [dm6]	C	T	4.850e^-4	0.993	INTRON pros
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	4.853e^-4	0.993	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	18820185	2L_18820185_SNP [dm3] 2L_18820185_SNP [dm6]	A	C	4.855e^-4	0.993	INTRON CG17324
3R	9179300	3R_9179300_SNP [dm3] 3R_13353578_SNP [dm6]	C	A	4.856e^-4	0.993	UPSTREAM mthl12 INTERGENIC
2L	3004954	2L_3004954_SNP [dm3] 2L_3004954_SNP [dm6]	A	C	4.856e^-4	0.993	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19636272	2L_19636272_DEL [dm3] 2L_19636272_DEL [dm6]	TTG	T	4.857e^-4	0.993	INTRON Lar
3R	24135981	3R_24135981_SNP [dm3] 3R_28310259_SNP [dm6]	T	A	4.862e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9121447	3R_9121447_SNP [dm3] 3R_13295725_SNP [dm6]	T	C	4.863e^-4	0.993	SYNONYMOUS_CODING CG8773	TF binding site mE1_TFBS_sens
3R	13638027	3R_13638027_DEL [dm3] 3R_17812305_DEL [dm6]	AA	A	4.866e^-4	0.993	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	14033461	2L_14033461_SNP [dm3] 2L_14033461_SNP [dm6]	G	C	4.866e^-4	0.993	EXON CR45284
2R	14420897	2R_14420897_SNP [dm3] 2R_18533392_SNP [dm6]	G	T	4.887e^-4	0.993	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9146112	3R_9146112_SNP [dm3] 3R_13320390_SNP [dm6]	A	G	4.887e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	10882379	3R_10882379_SNP [dm3] 3R_15056657_SNP [dm6]	G	A	4.888e^-4	0.993	UTR_3_PRIME dpr9
3L	3467551	3L_3467551_SNP [dm3] 3L_3467551_SNP [dm6]	A	C	4.891e^-4	0.993	NON_SYNONYMOUS_CODING CycJ UTR_3_PRIME CycJ DOWNSTREAM CG14971
2R	8632832	2R_8632832_SNP [dm3] 2R_12745327_SNP [dm6]	G	A	4.896e^-4	0.993	INTRON CG42663
2L	4857388	2L_4857388_SNP [dm3] 2L_4857388_SNP [dm6]	G	A	4.899e^-4	0.993	INTRON pog
3L	14907944	3L_14907944_SNP [dm3] 3L_14914844_SNP [dm6]	C	T	4.925e^-4	0.993	INTRON DCX-EMAP
3R	26686115	3R_26686115_INS [dm3] 3R_30860393_INS [dm6]	A	AAGTGGTATGTCT...	4.932e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8151488	X_8151488_SNP [dm3] X_8257455_SNP [dm6]	G	T	4.939e^-4	0.993	INTRON CG1632
3L	12726348	3L_12726348_SNP [dm3] 3L_12733248_SNP [dm6]	A	G	4.946e^-4	0.993	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11015651	2R_11015651_SNP [dm3] 2R_15128146_SNP [dm6]	A	G	4.948e^-4	0.993	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9192943	3L_9192943_SNP [dm3] 3L_9199843_SNP [dm6]	G	A	4.951e^-4	0.993	INTERGENIC
2R	14207168	2R_14207168_SNP [dm3] 2R_18319663_SNP [dm6]	T	C	4.963e^-4	0.993	INTRON sbb
2L	4415479	2L_4415479_SNP [dm3] 2L_4415479_SNP [dm6]	A	G	4.965e^-4	0.993	INTRON CG15431
3R	15162670	3R_15162670_SNP [dm3] 3R_19336948_SNP [dm6]	A	G	4.984e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3116867	2L_3116867_DEL [dm3] 2L_3116867_DEL [dm6]	GGGAAAAACTCAAGAAGA...	G	4.988e^-4	0.993	INTRON toc
2L	5392681	2L_5392681_SNP [dm3] 2L_5392681_SNP [dm6]	T	C	4.994e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15878958	3R_15878958_SNP [dm3] 3R_20053236_SNP [dm6]	C	A	4.996e^-4	0.993	INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb
3L	1940892	3L_1940892_SNP [dm3] 3L_1940892_SNP [dm6]	C	T	5.020e^-4	0.993	UPSTREAM Mfap1 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	23270644	3R_23270644_SNP [dm3] 3R_27444922_SNP [dm6]	T	G	5.023e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19625982	2L_19625982_SNP [dm3] 2L_19625982_SNP [dm6]	A	T	5.024e^-4	0.993	INTRON Lar
2L	15351317	2L_15351317_SNP [dm3] 2L_15351317_SNP [dm6]	C	A	5.033e^-4	0.993	INTERGENIC
3L	22358811	3L_22358811_SNP [dm3] 3L_22365711_SNP [dm6]	C	T	5.039e^-4	0.993	INTRON Ten-m	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
2R	18299548	2R_18299548_SNP [dm3] 2R_22412043_SNP [dm6]	G	A	5.044e^-4	0.993	UPSTREAM qkr58E-3 DOWNSTREAM qkr58E-1 INTRON Mes4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8343512	2L_8343512_SNP [dm3] 2L_8343512_SNP [dm6]	C	T	5.044e^-4	0.993	NON_SYNONYMOUS_CODING CG14273 EXON CR45371
2R	16868103	2R_16868103_SNP [dm3] 2R_20980598_SNP [dm6]	T	A	5.053e^-4	0.993	INTRON CG9313
3R	12317101	3R_12317101_SNP [dm3] 3R_16491379_SNP [dm6]	G	A	5.054e^-4	0.993	SYNONYMOUS_CODING Cad89D
2L	12093590	2L_12093590_SNP [dm3] 2L_12093590_SNP [dm6]	C	A	5.062e^-4	0.993	UPSTREAM Pex19 INTRON Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12617153	X_12617153_SNP [dm3] X_12723120_SNP [dm6]	T	G	5.072e^-4	0.993	INTRON Smr & 1 other
2L	1830568	2L_1830568_SNP [dm3] 2L_1830568_SNP [dm6]	G	A	5.080e^-4	0.993	INTERGENIC
3R	24136005	3R_24136005_SNP [dm3] 3R_28310283_SNP [dm6]	G	C	5.083e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	5418212	2L_5418212_SNP [dm3] 2L_5418212_SNP [dm6]	T	G	5.085e^-4	0.993	INTERGENIC
2R	16147788	2R_16147788_SNP [dm3] 2R_20260283_SNP [dm6]	A	G	5.086e^-4	0.993	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21458848	3R_21458848_SNP [dm3] 3R_25633126_SNP [dm6]	G	C	5.089e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21850558	2L_21850558_SNP [dm3] 2L_21850558_SNP [dm6]	C	A	5.091e^-4	0.993	INTERGENIC	regulatory region REDfly_CRMs
3R	8955280	3R_8955280_SNP [dm3] 3R_13129558_SNP [dm6]	T	C	5.095e^-4	0.993	INTRON timeout & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12727267	3L_12727267_SNP [dm3] 3L_12734167_SNP [dm6]	T	C	5.100e^-4	0.993	UPSTREAM Ptp69D INTRON SmD1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17900354	2R_17900354_SNP [dm3] 2R_22012849_SNP [dm6]	C	A	5.100e^-4	0.993	INTRON CG34370
3L	18036012	3L_18036012_SNP [dm3] 3L_18042912_SNP [dm6]	A	G	5.111e^-4	0.993	SYNONYMOUS_CODING CG42393 INTRON Eip75B
3R	22060213	3R_22060213_DEL [dm3] 3R_26234491_DEL [dm6]	TT	T	5.111e^-4	0.993	UTR_3_PRIME CG12290 UPSTREAM CR42745
3R	25022290	3R_25022290_SNP [dm3] 3R_29196568_SNP [dm6]	A	C	5.119e^-4	0.993	UPSTREAM CG14515 INTERGENIC
2R	15065866	2R_15065866_SNP [dm3] 2R_19178361_SNP [dm6]	T	C	5.122e^-4	0.993	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11480803	2R_11480803_SNP [dm3] 2R_15593298_SNP [dm6]	C	A	5.134e^-4	0.993	INTERGENIC
X	5213087	X_5213087_INS [dm3] X_5319054_INS [dm6]	A	AA	5.136e^-4	0.993	UTR_3_PRIME Sas10 & 1 other	TF binding site mE1_TFBS_chinmo
2R	20301942	2R_20301942_SNP [dm3] 2R_24414419_SNP [dm6]	T	A	5.145e^-4	0.993	SPLICE_SITE_REGION CG45069 & 1 other UPSTREAM CG45069 DOWNSTREAM prom INTRON CG45069 & 1 other
2L	6399112	2L_6399112_SNP [dm3] 2L_6399112_SNP [dm6]	T	G	5.150e^-4	0.993	INTRON CG42368
3L	13418936	3L_13418936_SNP [dm3] 3L_13425836_SNP [dm6]	T	C	5.152e^-4	0.993	UPSTREAM CG14106 DOWNSTREAM CG14105 INTERGENIC
3R	24255426	3R_24255426_SNP [dm3] 3R_28429704_SNP [dm6]	G	T	5.158e^-4	0.993	INTRON beat-VI
3L	13419625	3L_13419625_SNP [dm3] 3L_13426525_SNP [dm6]	A	G	5.162e^-4	0.993	NON_SYNONYMOUS_CODING CG14105 UPSTREAM CG14106
3L	11838003	3L_11838003_SNP [dm3] 3L_11844903_SNP [dm6]	C	G	5.166e^-4	0.993	INTERGENIC
2R	18302951	2R_18302951_SNP [dm3] 2R_22415446_SNP [dm6]	T	C	5.172e^-4	0.993	UTR_5_PRIME qkr58E-1 UPSTREAM qkr58E-2 DOWNSTREAM CR45152	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	6823987	2L_6823987_SNP [dm3] 2L_6823987_SNP [dm6]	A	T	5.174e^-4	0.993	INTRON sens-2
3R	9625417	3R_9625417_SNP [dm3] 3R_13799695_SNP [dm6]	T	A	5.181e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24478657	3R_24478657_SNP [dm3] 3R_28652935_SNP [dm6]	C	A	5.185e^-4	0.993	INTERGENIC
2L	7064059	2L_7064059_SNP [dm3] 2L_7064059_SNP [dm6]	C	T	5.186e^-4	0.993	UTR_5_PRIME Sem1 DOWNSTREAM Nuf2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	11005377	2R_11005377_SNP [dm3] 2R_15117872_SNP [dm6]	T	G	5.187e^-4	0.993	INTRON chn	TF binding site BDTNP1_TFBS_dl
2R	19369177	2R_19369177_SNP [dm3] 2R_23481654_SNP [dm6]	G	A	5.197e^-4	0.993	INTRON CG43795
3L	13949230	3L_13949230_SNP [dm3] 3L_13956130_SNP [dm6]	T	C	5.204e^-4	0.993	INTRON CG32137
2R	14849386	2R_14849386_SNP [dm3] 2R_18961881_SNP [dm6]	T	A	5.215e^-4	0.993	INTERGENIC
3R	17100441	3R_17100441_SNP [dm3] 3R_21274719_SNP [dm6]	G	A	5.218e^-4	0.993	UPSTREAM CG3308 DOWNSTREAM CG3301 INTRON CG3301
3R	17100463	3R_17100463_SNP [dm3] 3R_21274741_SNP [dm6]	C	T	5.218e^-4	0.993	UPSTREAM CG3308 DOWNSTREAM CG3301 INTRON CG3301
3R	17100499	3R_17100499_SNP [dm3] 3R_21274777_SNP [dm6]	A	G	5.218e^-4	0.993	UPSTREAM CG3308 DOWNSTREAM CG3301 INTRON CG3301
2L	18448252	2L_18448252_SNP [dm3] 2L_18448252_SNP [dm6]	G	A	5.218e^-4	0.993	SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17952751	3R_17952751_SNP [dm3] 3R_22127029_SNP [dm6]	T	A	5.224e^-4	0.993	INTRON CG42390
3L	8572671	3L_8572671_SNP [dm3] 3L_8579571_SNP [dm6]	C	A	5.226e^-4	0.993	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_inv
2R	10815075	2R_10815075_SNP [dm3] 2R_14927570_SNP [dm6]	G	T	5.232e^-4	0.993	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14414537	2R_14414537_SNP [dm3] 2R_18527032_SNP [dm6]	T	C	5.235e^-4	0.993	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3539787	3L_3539787_INS [dm3] 3L_3539787_INS [dm6]	G	GG	5.235e^-4	0.993	INTRON Eip63E
2R	6954257	2R_6954257_SNP [dm3] 2R_11066752_SNP [dm6]	T	C	5.243e^-4	0.993	INTRON luna
2R	11497206	2R_11497206_SNP [dm3] 2R_15609701_SNP [dm6]	C	G	5.245e^-4	0.993	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9085532	3R_9085532_SNP [dm3] 3R_13259810_SNP [dm6]	C	T	5.247e^-4	0.993	UPSTREAM CG11686 & 1 other INTERGENIC
2L	19642831	2L_19642831_SNP [dm3] 2L_19642831_SNP [dm6]	A	T	5.248e^-4	0.993	UPSTREAM CR44979 INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	20145955	X_20145955_SNP [dm3] X_20274929_SNP [dm6]	A	G	5.251e^-4	0.993	INTERGENIC
X	7071356	X_7071356_SNP [dm3] X_7177323_SNP [dm6]	T	A	5.251e^-4	0.993	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12256083	2L_12256083_SNP [dm3] 2L_12256083_SNP [dm6]	T	C	5.261e^-4	0.993	INTRON aret
2R	18475556	2R_18475556_SNP [dm3] 2R_22588051_SNP [dm6]	A	T	5.262e^-4	0.993	INTRON dnr1
2L	2153574	2L_2153574_SNP [dm3] 2L_2153574_SNP [dm6]	G	A	5.264e^-4	0.993	INTRON AIF	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	3083389	2L_3083389_SNP [dm3] 2L_3083389_SNP [dm6]	C	A	5.283e^-4	0.993	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	13817040	X_13817040_SNP [dm3] X_13923007_SNP [dm6]	A	G	5.291e^-4	0.993	INTRON mamo
2R	17899094	2R_17899094_SNP [dm3] 2R_22011589_SNP [dm6]	A	T	5.297e^-4	0.993	INTRON CG34370
2L	16857283	2L_16857283_SNP [dm3] 2L_16857283_SNP [dm6]	A	C	5.310e^-4	0.993	INTRON CG31809	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19626413	3L_19626413_SNP [dm3] 3L_19633313_SNP [dm6]	A	G	5.312e^-4	0.993	UPSTREAM wnd INTRON wnd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23483773	3R_23483773_SNP [dm3] 3R_27658051_SNP [dm6]	C	T	5.316e^-4	0.993	INTRON Mlc1	TF binding site mE1_TFBS_inv
3R	2902452	3R_2902452_SNP [dm3] 3R_7076730_SNP [dm6]	C	A	5.320e^-4	0.993	UPSTREAM CG1943 INTRON CG1943	TF binding site BDTNP1_TFBS_dl
3R	10888336	3R_10888336_SNP [dm3] 3R_15062614_SNP [dm6]	G	A	5.320e^-4	0.993	INTRON dpr9
2R	18096846	2R_18096846_SNP [dm3] 2R_22209341_SNP [dm6]	G	T	5.328e^-4	0.993	SYNONYMOUS_CODING CG3264
3R	19066892	3R_19066892_SNP [dm3] 3R_23241170_SNP [dm6]	T	G	5.343e^-4	0.993	INTRON CG4467
2R	10112813	2R_10112813_SNP [dm3] 2R_14225308_SNP [dm6]	C	T	5.355e^-4	0.993	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2L	12089849	2L_12089849_SNP [dm3] 2L_12089849_SNP [dm6]	C	G	5.394e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12258051	2L_12258051_SNP [dm3] 2L_12258051_SNP [dm6]	T	G	5.405e^-4	0.993	INTRON aret
3R	12031095	3R_12031095_SNP [dm3] 3R_16205373_SNP [dm6]	C	T	5.408e^-4	0.993	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	12223155	3L_12223155_SNP [dm3] 3L_12230055_SNP [dm6]	A	T	5.410e^-4	0.993	INTRON app
X	9103197	X_9103197_SNP [dm3] X_9209164_SNP [dm6]	T	A	5.416e^-4	0.993	INTRON CG12119
3L	7467990	3L_7467990_INS [dm3] 3L_7474890_INS [dm6]	T	TTT	5.421e^-4	0.993	UPSTREAM CG43292 INTERGENIC
3L	7203405	3L_7203405_SNP [dm3] 3L_7210305_SNP [dm6]	A	G	5.428e^-4	0.993	INTERGENIC
2R	19216070	2R_19216070_SNP [dm3] 2R_23328547_SNP [dm6]	T	A	5.432e^-4	0.993	UPSTREAM CG30417 DOWNSTREAM CG30413 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16371093	2L_16371093_SNP [dm3] 2L_16371093_SNP [dm6]	A	G	5.433e^-4	0.993	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14351857	2L_14351857_DEL [dm3] 2L_14351857_DEL [dm6]	CG	T	5.446e^-4	0.993	UPSTREAM CG43052 & 1 other DOWNSTREAM l_2_34Fd INTERGENIC
2R	4512754	2R_4512754_SNP [dm3] 2R_8625249_SNP [dm6]	G	A	5.446e^-4	0.993	UPSTREAM Vps25 DOWNSTREAM beta3GalTII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

cv_BoutNumber_Night phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results