DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.919e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07133

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.806	0.0333

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1988 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10784964	3L_10784964_SNP [dm3] 3L_10791864_SNP [dm6]	C	T	1.664e^-6	0.91	INTERGENIC
2L	17394794	2L_17394794_DEL [dm3] 2L_17394794_DEL [dm6]	ACACGTGA	A	2.971e^-6	0.91	INTRON CLIP-190
X	8184377	X_8184377_SNP [dm3] X_8290344_SNP [dm6]	C	T	4.258e^-6	0.91	INTRON nAChRalpha3
2R	10133755	2R_10133755_SNP [dm3] 2R_14246250_SNP [dm6]	C	A	4.446e^-6	0.91	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
2L	17394834	2L_17394834_INS [dm3] 2L_17394834_INS [dm6]	G	GCATAGGTACTTTAGTTATA...	5.729e^-6	0.91	INTRON CLIP-190
2L	1948749	2L_1948749_SNP [dm3] 2L_1948749_SNP [dm6]	A	G	5.775e^-6	0.91	INTERGENIC	regulatory region REDfly_CRMs
3R	27476678	3R_27476678_SNP [dm3] 3R_31650956_SNP [dm6]	T	C	6.161e^-6	0.91	INTRON kek6
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	6.289e^-6	0.91	INTRON Con
3R	8364009	3R_8364009_SNP [dm3] 3R_12538287_SNP [dm6]	T	G	7.117e^-6	0.91	INTRON Octbeta3R
3L	18564371	3L_18564371_SNP [dm3] 3L_18571271_SNP [dm6]	C	T	7.609e^-6	0.91	INTRON AstC-R1
2L	19590589	2L_19590589_SNP [dm3] 2L_19590589_SNP [dm6]	T	G	8.023e^-6	0.91	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26321298	3R_26321298_SNP [dm3] 3R_30495576_SNP [dm6]	G	A	8.343e^-6	0.91	INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
2L	12762833	2L_12762833_SNP [dm3] 2L_12762833_SNP [dm6]	C	T	1.002e^-5	0.91	UPSTREAM CG15483 INTERGENIC
2R	10214427	2R_10214427_SNP [dm3] 2R_14326922_SNP [dm6]	T	C	1.040e^-5	0.91	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
2R	10214815	2R_10214815_SNP [dm3] 2R_14327310_SNP [dm6]	A	G	1.149e^-5	0.91	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17176694	X_17176694_SNP [dm3] X_17282661_SNP [dm6]	C	A	1.160e^-5	0.91	SYNONYMOUS_CODING CG8664 UTR_5_PRIME CG5445	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	10349795	3R_10349795_SNP [dm3] 3R_14524073_SNP [dm6]	C	T	1.172e^-5	0.91	INTRON Pde6
2L	2473735	2L_2473735_SNP [dm3] 2L_2473735_SNP [dm6]	A	T	1.206e^-5	0.91	UPSTREAM CR45286 INTERGENIC	regulatory region REDfly_CRMs
3L	4937828	3L_4937828_SNP [dm3] 3L_4937828_SNP [dm6]	C	T	1.318e^-5	0.91	UTR_3_PRIME Con DOWNSTREAM Con
X	6530203	X_6530203_SNP [dm3] X_6636170_SNP [dm6]	G	A	1.344e^-5	0.91	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
3R	14672743	3R_14672743_SNP [dm3] 3R_18847021_SNP [dm6]	T	A	1.441e^-5	0.91	INTRON CG18208
3R	9909155	3R_9909155_SNP [dm3] 3R_14083433_SNP [dm6]	C	A	1.443e^-5	0.91	INTRON foxo
2R	2855654	2R_2855654_SNP [dm3] 2R_6968149_SNP [dm6]	G	C	1.586e^-5	0.91	INTRON mim & 1 other
X	8184385	X_8184385_SNP [dm3] X_8290352_SNP [dm6]	G	T	1.609e^-5	0.91	INTRON nAChRalpha3
2R	10134908	2R_10134908_SNP [dm3] 2R_14247403_SNP [dm6]	A	G	1.632e^-5	0.91	INTRON Mdr50
2R	11809104	2R_11809104_SNP [dm3] 2R_15921599_SNP [dm6]	T	A	1.667e^-5	0.91	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11735503	2R_11735503_SNP [dm3] 2R_15847998_SNP [dm6]	C	G	1.882e^-5	0.91	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10133855	2R_10133855_SNP [dm3] 2R_14246350_SNP [dm6]	A	T	1.968e^-5	0.91	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
2R	10135658	2R_10135658_SNP [dm3] 2R_14248153_SNP [dm6]	C	T	2.062e^-5	0.91	SYNONYMOUS_CODING Mdr50
2R	10021882	2R_10021882_SNP [dm3] 2R_14134377_SNP [dm6]	G	T	2.088e^-5	0.91	INTRON Prosap
2R	10136712	2R_10136712_SNP [dm3] 2R_14249207_SNP [dm6]	C	T	2.130e^-5	0.91	NON_SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3L	9622447	3L_9622447_SNP [dm3] 3L_9629347_SNP [dm6]	A	G	2.162e^-5	0.91	UPSTREAM CG8336 & 1 other INTRON CG8336
2L	18909085	2L_18909085_SNP [dm3] 2L_18909085_SNP [dm6]	T	C	2.270e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	18909112	2L_18909112_SNP [dm3] 2L_18909112_SNP [dm6]	T	C	2.385e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	10135360	2R_10135360_SNP [dm3] 2R_14247855_SNP [dm6]	C	T	2.414e^-5	0.91	INTRON Mdr50
2R	10021914	2R_10021914_INS [dm3] 2R_14134409_INS [dm6]	TC	AAGT	2.467e^-5	0.91	INTRON Prosap
2L	10648575	2L_10648575_SNP [dm3] 2L_10648575_SNP [dm6]	C	A	2.504e^-5	0.91	NON_SYNONYMOUS_CODING CG17097	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
2L	15431279	2L_15431279_SNP [dm3] 2L_15431279_SNP [dm6]	T	C	2.639e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10345795	3R_10345795_SNP [dm3] 3R_14520073_SNP [dm6]	G	T	2.677e^-5	0.91	UPSTREAM Cyp313a1 INTRON Pde6
X	21905879	X_21905879_SNP [dm3] X_22504043_SNP [dm6]	T	C	2.789e^-5	0.91	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
2R	10135408	2R_10135408_SNP [dm3] 2R_14247903_SNP [dm6]	G	A	2.910e^-5	0.91	INTRON Mdr50
3R	10352413	3R_10352413_SNP [dm3] 3R_14526691_SNP [dm6]	T	C	2.955e^-5	0.91	INTRON Pde6
3R	8363784	3R_8363784_DEL [dm3] 3R_12538062_DEL [dm6]	AGGGGTTTAACTA...	A	3.035e^-5	0.91	INTRON Octbeta3R
3R	6876905	3R_6876905_SNP [dm3] 3R_11051183_SNP [dm6]	G	T	3.236e^-5	0.91	INTERGENIC
3R	23670674	3R_23670674_SNP [dm3] 3R_27844952_SNP [dm6]	T	A	3.275e^-5	0.91	UPSTREAM Or98P & 1 other INTRON CG34353
2R	10135272	2R_10135272_SNP [dm3] 2R_14247767_SNP [dm6]	A	C	3.283e^-5	0.91	INTRON Mdr50
2L	19737165	2L_19737165_SNP [dm3] 2L_19737165_SNP [dm6]	A	G	3.380e^-5	0.91	DOWNSTREAM Nf-YB INTERGENIC
3R	27476284	3R_27476284_SNP [dm3] 3R_31650562_SNP [dm6]	C	T	3.399e^-5	0.91	INTRON kek6
2L	21918567	2L_21918567_SNP [dm3] 2L_21918567_SNP [dm6]	C	T	3.482e^-5	0.91	INTRON CG11634
3L	3183841	3L_3183841_SNP [dm3] 3L_3183841_SNP [dm6]	A	G	3.487e^-5	0.91	UPSTREAM CG42494 INTRON Girdin
3L	7845930	3L_7845930_SNP [dm3] 3L_7852830_SNP [dm6]	A	G	3.519e^-5	0.91	INTRON Pdp1
3R	10370747	3R_10370747_SNP [dm3] 3R_14545025_SNP [dm6]	C	A	3.554e^-5	0.91	INTRON Pde6
2L	17394936	2L_17394936_SNP [dm3] 2L_17394936_SNP [dm6]	T	A	3.555e^-5	0.91	INTRON CLIP-190
2L	3220607	2L_3220607_DEL [dm3] 2L_3220607_DEL [dm6]	AATCACAAT	A	3.563e^-5	0.91	INTERGENIC
2R	6509019	2R_6509019_SNP [dm3] 2R_10621514_SNP [dm6]	T	G	3.711e^-5	0.91	UPSTREAM CG11883 INTRON CG11883
3R	6279172	3R_6279172_DEL [dm3] 3R_10453450_DEL [dm6]	ATTTAAA	A	3.724e^-5	0.91	INTERGENIC
2L	11951357	2L_11951357_SNP [dm3] 2L_11951357_SNP [dm6]	G	A	3.746e^-5	0.91	DOWNSTREAM CR43314 INTERGENIC
2L	2505579	2L_2505579_SNP [dm3] 2L_2505579_SNP [dm6]	T	G	3.789e^-5	0.91	INTERGENIC
X	17176035	X_17176035_SNP [dm3] X_17282002_SNP [dm6]	A	C	3.829e^-5	0.91	NON_SYNONYMOUS_CODING CG8664 UPSTREAM CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13835322	3L_13835322_SNP [dm3] 3L_13842222_SNP [dm6]	A	G	3.981e^-5	0.91	UTR_5_PRIME CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
2L	19587673	2L_19587673_DEL [dm3] 2L_19587673_DEL [dm6]	TGTT	T	3.981e^-5	0.91	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15124385	2L_15124385_INS [dm3] 2L_15124385_INS [dm6]	A	AAGCTATAATA...	4.006e^-5	0.91	INTERGENIC
2L	11951342	2L_11951342_SNP [dm3] 2L_11951342_SNP [dm6]	A	C	4.043e^-5	0.91	DOWNSTREAM CR43314 INTERGENIC
2L	12638336	2L_12638336_SNP [dm3] 2L_12638336_SNP [dm6]	A	G	4.102e^-5	0.91	INTRON Ref2	TF binding site BDTNP1_TFBS_twi
2R	10135379	2R_10135379_SNP [dm3] 2R_14247874_SNP [dm6]	T	C	4.168e^-5	0.91	INTRON Mdr50
2R	11730628	2R_11730628_SNP [dm3] 2R_15843123_SNP [dm6]	G	T	4.178e^-5	0.91	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	17390180	2L_17390180_SNP [dm3] 2L_17390180_SNP [dm6]	G	C	4.294e^-5	0.91	INTRON CLIP-190
2L	17390182	2L_17390182_SNP [dm3] 2L_17390182_SNP [dm6]	C	T	4.294e^-5	0.91	INTRON CLIP-190
2L	3992381	2L_3992381_SNP [dm3] 2L_3992381_SNP [dm6]	C	T	4.327e^-5	0.91	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	6279249	3R_6279249_SNP [dm3] 3R_10453527_SNP [dm6]	A	T	4.331e^-5	0.91	INTERGENIC
2R	8964195	2R_8964195_SNP [dm3] 2R_13076690_SNP [dm6]	T	C	4.348e^-5	0.91	INTRON Drl-2
X	6530243	X_6530243_SNP [dm3] X_6636210_SNP [dm6]	G	T	4.362e^-5	0.91	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
3R	23670682	3R_23670682_SNP [dm3] 3R_27844960_SNP [dm6]	T	C	4.362e^-5	0.91	UPSTREAM Or98P & 1 other INTRON CG34353
2R	19034513	2R_19034513_SNP [dm3] 2R_23146990_SNP [dm6]	A	C	4.418e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	23670560	3R_23670560_DEL [dm3] 3R_27844838_DEL [dm6]	GG	G	4.493e^-5	0.91	UPSTREAM Or98P INTRON CG34353
4	229842	4_229842_SNP [dm3] 4_209216_SNP [dm6]	A	T	4.555e^-5	0.91	INTERGENIC	transposable element FlyBase
2L	1948750	2L_1948750_SNP [dm3] 2L_1948750_SNP [dm6]	T	A	4.590e^-5	0.91	INTERGENIC	regulatory region REDfly_CRMs
2L	15807256	2L_15807256_SNP [dm3] 2L_15807256_SNP [dm6]	C	A	4.741e^-5	0.91	EXON CR44602
2R	10031189	2R_10031189_SNP [dm3] 2R_14143684_SNP [dm6]	C	T	4.773e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10351375	3R_10351375_SNP [dm3] 3R_14525653_SNP [dm6]	T	C	4.783e^-5	0.91	INTRON Pde6
3R	10349630	3R_10349630_SNP [dm3] 3R_14523908_SNP [dm6]	T	C	4.814e^-5	0.91	DOWNSTREAM Cyp313a1 INTRON Pde6
X	2853800	X_2853800_SNP [dm3] X_2959767_SNP [dm6]	T	C	4.824e^-5	0.91	INTRON kirre & 1 other	TF binding site mE1_TFBS_Kr
3R	23781813	3R_23781813_SNP [dm3] 3R_27956091_SNP [dm6]	G	C	4.887e^-5	0.91	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11072204	2L_11072204_SNP [dm3] 2L_11072204_SNP [dm6]	A	G	4.997e^-5	0.91	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8363723	3R_8363723_SNP [dm3] 3R_12538001_SNP [dm6]	T	G	5.059e^-5	0.91	INTRON Octbeta3R
X	18331829	X_18331829_SNP [dm3] X_18437796_SNP [dm6]	T	A	5.091e^-5	0.91	NON_SYNONYMOUS_CODING CG6290 UPSTREAM CG32548 INTRON CG32548	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14307071	2L_14307071_SNP [dm3] 2L_14307071_SNP [dm6]	T	C	5.200e^-5	0.91	INTRON wb
2R	10214793	2R_10214793_SNP [dm3] 2R_14327288_SNP [dm6]	T	C	5.205e^-5	0.91	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10135227	2R_10135227_SNP [dm3] 2R_14247722_SNP [dm6]	T	G	5.262e^-5	0.91	INTRON Mdr50
2L	22035258	2L_22035258_DEL [dm3] 2L_22035258_DEL [dm6]	GCGATCCCAGCTCGACGTAC...	TG	5.293e^-5	0.91	INTERGENIC
2R	10134851	2R_10134851_DEL [dm3] 2R_14247346_DEL [dm6]	AA	A	5.318e^-5	0.91	INTRON Mdr50
2R	9098221	2R_9098221_SNP [dm3] 2R_13210716_SNP [dm6]	G	A	5.336e^-5	0.91	DOWNSTREAM FLASH INTRON CG34312 & 2 others
3R	7673870	3R_7673870_SNP [dm3] 3R_11848148_SNP [dm6]	C	T	5.342e^-5	0.91	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17386039	2L_17386039_SNP [dm3] 2L_17386039_SNP [dm6]	G	A	5.476e^-5	0.91	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8966242	2R_8966242_SNP [dm3] 2R_13078737_SNP [dm6]	A	G	5.570e^-5	0.91	INTRON Drl-2
3R	21956146	3R_21956146_SNP [dm3] 3R_26130424_SNP [dm6]	G	C	5.584e^-5	0.91	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
2L	17394922	2L_17394922_SNP [dm3] 2L_17394922_SNP [dm6]	T	A	5.643e^-5	0.91	INTRON CLIP-190
2L	17385080	2L_17385080_DEL [dm3] 2L_17385080_DEL [dm6]	AA	A	5.781e^-5	0.91	UTR_5_PRIME CLIP-190 UPSTREAM Lrch INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	14399177	2R_14399177_SNP [dm3] 2R_18511672_SNP [dm6]	A	C	5.820e^-5	0.91	INTERGENIC
3R	26200434	3R_26200434_SNP [dm3] 3R_30374712_SNP [dm6]	T	C	5.826e^-5	0.91	INTERGENIC
3L	13575932	3L_13575932_SNP [dm3] 3L_13582832_SNP [dm6]	C	T	5.893e^-5	0.91	INTRON bru-3
3L	12503722	3L_12503722_SNP [dm3] 3L_12510622_SNP [dm6]	T	C	5.980e^-5	0.91	SYNONYMOUS_CODING sti
4	283374	4_283374_SNP [dm3] 4_262748_SNP [dm6]	G	A	6.014e^-5	0.91	DOWNSTREAM RhoGAP102A INTRON RhoGAP102A
2L	5259885	2L_5259885_SNP [dm3] 2L_5259885_SNP [dm6]	C	T	6.137e^-5	0.91	INTRON tkv EXON CR44744
2R	10021877	2R_10021877_SNP [dm3] 2R_14134372_SNP [dm6]	T	G	6.158e^-5	0.91	INTRON Prosap
2R	2686906	2R_2686906_SNP [dm3] 2R_6799401_SNP [dm6]	A	T	6.168e^-5	0.91	UPSTREAM Epac INTERGENIC
2L	19235215	2L_19235215_SNP [dm3] 2L_19235215_SNP [dm6]	C	A	6.221e^-5	0.91	INTERGENIC
2L	12715601	2L_12715601_SNP [dm3] 2L_12715601_SNP [dm6]	A	T	6.232e^-5	0.91	INTRON CG5792
3R	8363754	3R_8363754_SNP [dm3] 3R_12538032_SNP [dm6]	T	A	6.386e^-5	0.91	INTRON Octbeta3R
2R	10021890	2R_10021890_SNP [dm3] 2R_14134385_SNP [dm6]	A	C	6.402e^-5	0.91	INTRON Prosap
3R	10351520	3R_10351520_SNP [dm3] 3R_14525798_SNP [dm6]	C	T	6.453e^-5	0.91	INTRON Pde6
X	17175125	X_17175125_SNP [dm3] X_17281092_SNP [dm6]	A	G	6.500e^-5	0.91	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
2R	8536720	2R_8536720_SNP [dm3] 2R_12649215_SNP [dm6]	T	G	6.520e^-5	0.91	UPSTREAM CG8785 INTERGENIC
2L	16454957	2L_16454957_SNP [dm3] 2L_16454957_SNP [dm6]	C	T	6.522e^-5	0.91	UTR_3_PRIME Idgf3 DOWNSTREAM Idgf3	regulatory region REDfly_CRMs
2L	17284966	2L_17284966_SNP [dm3] 2L_17284966_SNP [dm6]	G	A	6.630e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_inv
2L	21214925	2L_21214925_DEL [dm3] 2L_21214925_DEL [dm6]	TCT	T	6.735e^-5	0.91	DOWNSTREAM snRNA:U4:39B INTRON Atg18b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11951355	2L_11951355_SNP [dm3] 2L_11951355_SNP [dm6]	C	A	6.741e^-5	0.91	DOWNSTREAM CR43314 INTERGENIC
2L	15779227	2L_15779227_SNP [dm3] 2L_15779227_SNP [dm6]	C	T	6.784e^-5	0.91	INTERGENIC
3L	984381	3L_984381_SNP [dm3] 3L_984381_SNP [dm6]	A	C	6.844e^-5	0.91	UTR_3_PRIME Glut1 INTRON Glut1
2R	14043358	2R_14043358_SNP [dm3] 2R_18155853_SNP [dm6]	T	C	6.942e^-5	0.91	INTRON lolal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3R	14033155	3R_14033155_SNP [dm3] 3R_18207433_SNP [dm6]	A	T	6.961e^-5	0.91	INTRON CG7985
X	14548570	X_14548570_SNP [dm3] X_14654537_SNP [dm6]	T	G	6.980e^-5	0.91	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	1954145	2L_1954145_SNP [dm3] 2L_1954145_SNP [dm6]	G	A	7.074e^-5	0.91	INTRON erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16482160	2R_16482160_SNP [dm3] 2R_20594655_SNP [dm6]	G	A	7.189e^-5	0.91	INTRON bl
4	739338	4_739338_INS [dm3] 4_718712_INS [dm6]	A	AATTCATTTAACCTTGGGCT...	7.224e^-5	0.91	INTRON ey	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
4	398256	4_398256_SNP [dm3] 4_377630_SNP [dm6]	G	T	7.255e^-5	0.91	NON_SYNONYMOUS_CODING Lin29	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10135143	2R_10135143_SNP [dm3] 2R_14247638_SNP [dm6]	C	A	7.323e^-5	0.91	INTRON Mdr50
3R	9907587	3R_9907587_SNP [dm3] 3R_14081865_SNP [dm6]	C	T	7.353e^-5	0.91	SYNONYMOUS_CODING foxo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8557290	X_8557290_INS [dm3] X_8663257_INS [dm6]	A	AA	7.437e^-5	0.91	INTERGENIC
X	9114343	X_9114343_SNP [dm3] X_9220310_SNP [dm6]	G	A	7.446e^-5	0.91	INTRON t	TF binding site mE1_TFBS_cad
3R	4221402	3R_4221402_SNP [dm3] 3R_8395680_SNP [dm6]	T	A	7.527e^-5	0.91	INTRON CG45263
3L	10745467	3L_10745467_SNP [dm3] 3L_10752367_SNP [dm6]	G	A	7.547e^-5	0.91	INTERGENIC
3R	6478533	3R_6478533_SNP [dm3] 3R_10652811_SNP [dm6]	T	C	7.661e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
2R	17813018	2R_17813018_SNP [dm3] 2R_21925513_SNP [dm6]	G	A	7.728e^-5	0.91	INTRON Fili
2R	14904637	2R_14904637_SNP [dm3] 2R_19017132_SNP [dm6]	T	A	7.761e^-5	0.91	INTERGENIC
4	184048	4_184048_SNP [dm3] 4_163422_SNP [dm6]	T	A	7.800e^-5	0.91	NON_SYNONYMOUS_CODING CG33978
3R	5260690	3R_5260690_SNP [dm3] 3R_9434968_SNP [dm6]	T	G	7.847e^-5	0.91	INTRON ps
2R	17953839	2R_17953839_SNP [dm3] 2R_22066334_SNP [dm6]	C	T	7.893e^-5	0.91	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_twi
3L	4098724	3L_4098724_SNP [dm3] 3L_4098724_SNP [dm6]	C	T	7.898e^-5	0.91	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	21956143	3R_21956143_SNP [dm3] 3R_26130421_SNP [dm6]	A	G	7.951e^-5	0.91	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
3R	24016152	3R_24016152_SNP [dm3] 3R_28190430_SNP [dm6]	T	C	7.982e^-5	0.91	INTRON CG34354
3L	13280782	3L_13280782_SNP [dm3] 3L_13287682_SNP [dm6]	A	T	7.996e^-5	0.91	UPSTREAM CR45753 INTERGENIC
3R	25464512	3R_25464512_SNP [dm3] 3R_29638790_SNP [dm6]	G	A	8.027e^-5	0.91	INTRON Dop1R2
2L	3992418	2L_3992418_SNP [dm3] 2L_3992418_SNP [dm6]	G	A	8.064e^-5	0.91	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16059269	3L_16059269_SNP [dm3] 3L_16066169_SNP [dm6]	T	A	8.079e^-5	0.91	INTRON Mbs
2L	22198363	2L_22198363_SNP [dm3] 2L_22198363_SNP [dm6]	G	A	8.208e^-5	0.91	UTR_5_PRIME Ir40a UPSTREAM Ir40a INTRON Ir40a
2L	2463169	2L_2463169_SNP [dm3] 2L_2463169_SNP [dm6]	T	C	8.228e^-5	0.91	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3L	10999378	3L_10999378_SNP [dm3] 3L_11006278_SNP [dm6]	G	A	8.244e^-5	0.91	INTRON klu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23388847	3R_23388847_SNP [dm3] 3R_27563125_SNP [dm6]	T	G	8.261e^-5	0.91	UTR_3_PRIME wdb
3R	14033221	3R_14033221_SNP [dm3] 3R_18207499_SNP [dm6]	T	G	8.350e^-5	0.91	INTRON CG7985
3R	21125627	3R_21125627_SNP [dm3] 3R_25299905_SNP [dm6]	A	T	8.446e^-5	0.91	UPSTREAM CG31288 & 1 other INTERGENIC
X	11734924	X_11734924_SNP [dm3] X_11840891_SNP [dm6]	T	C	8.570e^-5	0.91	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
X	12215370	X_12215370_SNP [dm3] X_12321337_SNP [dm6]	A	T	8.603e^-5	0.91	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
2R	10030838	2R_10030838_SNP [dm3] 2R_14143333_SNP [dm6]	G	A	8.676e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	14539390	3L_14539390_SNP [dm3] 3L_14546290_SNP [dm6]	A	C	8.768e^-5	0.91	INTRON CG9238	TF binding site BDTNP1_TFBS_dl
3R	12705991	3R_12705991_SNP [dm3] 3R_16880269_SNP [dm6]	A	C	8.811e^-5	0.91	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	11809117	2R_11809117_SNP [dm3] 2R_15921612_SNP [dm6]	A	G	8.851e^-5	0.91	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16290573	3L_16290573_DEL [dm3] 3L_16297473_DEL [dm6]	TTT	A	8.879e^-5	0.91	INTERGENIC
3R	26210667	3R_26210667_SNP [dm3] 3R_30384945_SNP [dm6]	A	G	8.930e^-5	0.91	DOWNSTREAM Fer1HCH INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Kr
3R	4583508	3R_4583508_SNP [dm3] 3R_8757786_SNP [dm6]	G	T	8.936e^-5	0.91	INTRON CG11768 & 1 other
X	19201268	X_19201268_SNP [dm3] X_19307235_SNP [dm6]	C	A	9.136e^-5	0.91	INTRON CG8051
2L	15364340	2L_15364340_SNP [dm3] 2L_15364340_SNP [dm6]	T	C	9.151e^-5	0.91	INTERGENIC
2R	10021899	2R_10021899_INS [dm3] 2R_14134394_INS [dm6]	C	CTG	9.171e^-5	0.91	INTRON Prosap
3R	10349734	3R_10349734_SNP [dm3] 3R_14524012_SNP [dm6]	C	T	9.198e^-5	0.91	DOWNSTREAM Cyp313a1 INTRON Pde6
3R	25899196	3R_25899196_SNP [dm3] 3R_30073474_SNP [dm6]	C	T	9.303e^-5	0.91	INTRON sima	TF binding site mE1_TFBS_chinmo
2R	2855506	2R_2855506_INS [dm3] 2R_6968001_INS [dm6]	C	CC	9.356e^-5	0.91	INTRON mim & 1 other
3R	4583501	3R_4583501_SNP [dm3] 3R_8757779_SNP [dm6]	C	T	9.362e^-5	0.91	INTRON CG11768 & 1 other
2L	9089185	2L_9089185_SNP [dm3] 2L_9089185_SNP [dm6]	G	A	9.403e^-5	0.91	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9098264	2R_9098264_SNP [dm3] 2R_13210759_SNP [dm6]	G	C	9.408e^-5	0.91	UTR_5_PRIME CG34312 DOWNSTREAM FLASH INTRON CG30058 & 2 others
2L	5993382	2L_5993382_DEL [dm3] 2L_5993382_DEL [dm6]	TCGGTAAGCTTGGATGACGA...	T	9.425e^-5	0.91	INTRON lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8324768	2R_8324768_SNP [dm3] 2R_12437263_SNP [dm6]	T	A	9.454e^-5	0.91	UPSTREAM Dyb & 1 other DOWNSTREAM CG30051 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17285039	2L_17285039_SNP [dm3] 2L_17285039_SNP [dm6]	C	T	9.466e^-5	0.91	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8966875	2R_8966875_SNP [dm3] 2R_13079370_SNP [dm6]	C	T	9.480e^-5	0.91	UTR_5_PRIME Drl-2
2R	10021876	2R_10021876_SNP [dm3] 2R_14134371_SNP [dm6]	C	G	9.543e^-5	0.91	INTRON Prosap
X	16011705	X_16011705_SNP [dm3] X_16117672_SNP [dm6]	G	A	9.545e^-5	0.91	DOWNSTREAM disco-r INTERGENIC
2R	10133799	2R_10133799_SNP [dm3] 2R_14246294_SNP [dm6]	T	C	9.545e^-5	0.91	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
2R	10021947	2R_10021947_SNP [dm3] 2R_14134442_SNP [dm6]	G	A	9.548e^-5	0.91	INTRON Prosap
3R	19354181	3R_19354181_SNP [dm3] 3R_23528459_SNP [dm6]	C	T	9.573e^-5	0.91	INTRON CG10175	TF binding site mE1_TFBS_cad
2R	15927408	2R_15927408_SNP [dm3] 2R_20039903_SNP [dm6]	G	C	9.594e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	579822	2L_579822_SNP [dm3] 2L_579822_SNP [dm6]	C	T	9.602e^-5	0.91	DOWNSTREAM Pph13 INTERGENIC
2L	12724687	2L_12724687_SNP [dm3] 2L_12724687_SNP [dm6]	T	A	9.623e^-5	0.91	INTRON MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	5684287	X_5684287_SNP [dm3] X_5790254_SNP [dm6]	T	G	9.741e^-5	0.91	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CG42699 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11734928	X_11734928_SNP [dm3] X_11840895_SNP [dm6]	C	T	9.785e^-5	0.91	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2R	14582934	2R_14582934_SNP [dm3] 2R_18695429_SNP [dm6]	A	C	9.887e^-5	0.91	INTRON Sik3	TF binding site BDTNP1_TFBS_dl
3L	22515882	3L_22515882_SNP [dm3] 3L_22522782_SNP [dm6]	G	C	9.887e^-5	0.91	INTERGENIC
2R	9754549	2R_9754549_SNP [dm3] 2R_13867044_SNP [dm6]	C	G	1.007e^-4	0.91	INTRON shot
X	2447598	X_2447598_SNP [dm3] X_2553565_SNP [dm6]	T	A	1.026e^-4	0.91	UPSTREAM Pdfr INTRON Pdfr
2R	5232782	2R_5232782_SNP [dm3] 2R_9345277_SNP [dm6]	T	A	1.029e^-4	0.91	UPSTREAM Or45a INTRON CG13954 & 1 other
3R	650842	3R_650842_SNP [dm3] 3R_4825120_SNP [dm6]	T	C	1.031e^-4	0.91	INTERGENIC
2L	15364347	2L_15364347_SNP [dm3] 2L_15364347_SNP [dm6]	A	G	1.033e^-4	0.91	INTERGENIC
2R	11735377	2R_11735377_SNP [dm3] 2R_15847872_SNP [dm6]	C	A	1.033e^-4	0.91	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8975322	3R_8975322_SNP [dm3] 3R_13149600_SNP [dm6]	A	C	1.034e^-4	0.91	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2R	9098244	2R_9098244_INS [dm3] 2R_13210739_INS [dm6]	T	TAGAACCATT	1.046e^-4	0.91	DOWNSTREAM FLASH INTRON CG34312 & 2 others
2R	9098248	2R_9098248_DEL [dm3] 2R_13210743_DEL [dm6]	TACATACAT	T	1.046e^-4	0.91	SPLICE_SITE_DONOR CG34312 SPLICE_SITE_REGION CG34312 UTR_5_PRIME CG34312 DOWNSTREAM FLASH INTRON CG34312 & 2 others
3L	1098245	3L_1098245_SNP [dm3] 3L_1098245_SNP [dm6]	G	A	1.049e^-4	0.91	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19794841	2L_19794841_SNP [dm3] 2L_19794841_SNP [dm6]	G	A	1.052e^-4	0.91	NON_SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
2L	5109949	2L_5109949_SNP [dm3] 2L_5109949_SNP [dm6]	A	G	1.056e^-4	0.91	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3877621	3R_3877621_SNP [dm3] 3R_8051899_SNP [dm6]	A	T	1.056e^-4	0.91	INTRON CG43060
2R	9215930	2R_9215930_DEL [dm3] 2R_13328425_DEL [dm6]	CTACAAAT	C	1.057e^-4	0.91	DOWNSTREAM CR44206 & 1 other INTERGENIC
2L	995373	2L_995373_SNP [dm3] 2L_995373_SNP [dm6]	G	A	1.082e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15779226	2L_15779226_SNP [dm3] 2L_15779226_SNP [dm6]	A	C	1.082e^-4	0.91	INTERGENIC
3R	21126986	3R_21126986_SNP [dm3] 3R_25301264_SNP [dm6]	C	G	1.097e^-4	0.91	NON_SYNONYMOUS_CODING CG13659
2L	11932387	2L_11932387_SNP [dm3] 2L_11932387_SNP [dm6]	A	C	1.098e^-4	0.91	INTERGENIC
X	21892454	X_21892454_SNP [dm3] X_22490618_SNP [dm6]	G	A	1.101e^-4	0.91	UPSTREAM l_1_G0196 INTRON l_1_G0196 & 1 other
3L	12399515	3L_12399515_SNP [dm3] 3L_12406415_SNP [dm6]	G	A	1.106e^-4	0.91	UPSTREAM CG32103 INTRON CG32103
4	254916	4_254916_SNP [dm3] 4_234290_SNP [dm6]	C	T	1.130e^-4	0.91	NON_SYNONYMOUS_CODING CG1674	TF binding site BDTNP1_TFBS_dl
3R	18265429	3R_18265429_SNP [dm3] 3R_22439707_SNP [dm6]	T	G	1.132e^-4	0.91	DOWNSTREAM CG12499 INTERGENIC
3R	24879465	3R_24879465_SNP [dm3] 3R_29053743_SNP [dm6]	G	A	1.141e^-4	0.91	SYNONYMOUS_CODING CG11842 UPSTREAM CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11951289	2L_11951289_SNP [dm3] 2L_11951289_SNP [dm6]	T	C	1.142e^-4	0.91	DOWNSTREAM CR43314 INTERGENIC
2L	3220618	2L_3220618_SNP [dm3] 2L_3220618_SNP [dm6]	C	A	1.147e^-4	0.91	INTERGENIC
2L	3734334	2L_3734334_SNP [dm3] 2L_3734334_SNP [dm6]	C	G	1.150e^-4	0.91	INTRON CG10019
2R	925614	2R_925614_SNP [dm3] 2R_5038109_SNP [dm6]	C	T	1.150e^-4	0.91	INTERGENIC
2R	9098241	2R_9098241_SNP [dm3] 2R_13210736_SNP [dm6]	A	G	1.152e^-4	0.91	DOWNSTREAM FLASH INTRON CG34312 & 2 others
3R	21523271	3R_21523271_SNP [dm3] 3R_25697549_SNP [dm6]	G	A	1.154e^-4	0.91	INTERGENIC
2L	721570	2L_721570_SNP [dm3] 2L_721570_SNP [dm6]	G	C	1.166e^-4	0.91	INTERGENIC
3L	4376077	3L_4376077_SNP [dm3] 3L_4376077_SNP [dm6]	A	C	1.168e^-4	0.91	INTRON DopEcR
3L	13838215	3L_13838215_SNP [dm3] 3L_13845115_SNP [dm6]	G	T	1.172e^-4	0.91	UTR_3_PRIME Tsp68C UPSTREAM Hml	TF binding site mE1_TFBS_bab1
2L	6253968	2L_6253968_SNP [dm3] 2L_6253968_SNP [dm6]	T	C	1.172e^-4	0.91	INTRON Ddr	TF binding site mE1_TFBS_Trl
3L	11171129	3L_11171129_SNP [dm3] 3L_11178029_SNP [dm6]	A	C	1.175e^-4	0.91	UTR_3_PRIME GlcAT-P
4	893477	4_893477_SNP [dm3] 4_872851_SNP [dm6]	T	C	1.181e^-4	0.91	INTRON unc-13
3R	14698379	3R_14698379_SNP [dm3] 3R_18872657_SNP [dm6]	A	G	1.182e^-4	0.91	INTERGENIC
3R	6476483	3R_6476483_SNP [dm3] 3R_10650761_SNP [dm6]	T	G	1.188e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10185026	2R_10185026_SNP [dm3] 2R_14297521_SNP [dm6]	A	T	1.194e^-4	0.91	INTRON Ih
2L	10757625	2L_10757625_SNP [dm3] 2L_10757625_SNP [dm6]	T	G	1.196e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11953510	2L_11953510_SNP [dm3] 2L_11953510_SNP [dm6]	A	T	1.198e^-4	0.91	UPSTREAM bft EXON CR43314
4	195988	4_195988_SNP [dm3] 4_175362_SNP [dm6]	C	A	1.200e^-4	0.91	UPSTREAM CR45198 & 1 other INTRON CG33978
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	1.201e^-4	0.91	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9743488	2R_9743488_SNP [dm3] 2R_13855983_SNP [dm6]	G	A	1.212e^-4	0.91	UPSTREAM CG6553 DOWNSTREAM tum & 1 other INTERGENIC
3R	14043962	3R_14043962_SNP [dm3] 3R_18218240_SNP [dm6]	C	T	1.215e^-4	0.91	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
4	197592	4_197592_SNP [dm3] 4_176966_SNP [dm6]	C	A	1.221e^-4	0.91	DOWNSTREAM Arl4 INTERGENIC
3L	7312861	3L_7312861_SNP [dm3] 3L_7319761_SNP [dm6]	T	C	1.225e^-4	0.91	UPSTREAM CG8607 INTERGENIC
3R	7672120	3R_7672120_SNP [dm3] 3R_11846398_SNP [dm6]	A	T	1.227e^-4	0.91	INTRON CG6959
3L	4210271	3L_4210271_SNP [dm3] 3L_4210271_SNP [dm6]	T	G	1.229e^-4	0.91	DOWNSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
4	530463	4_530463_DEL [dm3] 4_509837_DEL [dm6]	AC	A	1.238e^-4	0.91	INTRON zfh2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1003101	3L_1003101_DEL [dm3] 3L_1003101_DEL [dm6]	ATGCTCTCCGTTCATTACAG...	A	1.240e^-4	0.91	INTRON trio
3L	12503596	3L_12503596_SNP [dm3] 3L_12510496_SNP [dm6]	C	T	1.248e^-4	0.91	SYNONYMOUS_CODING sti
4	603065	4_603065_SNP [dm3] 4_582439_SNP [dm6]	A	C	1.249e^-4	0.91	UPSTREAM CG1909 INTERGENIC	transposable element FlyBase
X	16011668	X_16011668_SNP [dm3] X_16117635_SNP [dm6]	G	A	1.251e^-4	0.91	DOWNSTREAM disco-r INTERGENIC
3R	10351412	3R_10351412_SNP [dm3] 3R_14525690_SNP [dm6]	T	A	1.255e^-4	0.91	INTRON Pde6
2R	11862702	2R_11862702_SNP [dm3] 2R_15975197_SNP [dm6]	A	T	1.262e^-4	0.91	SYNONYMOUS_CODING Strn-Mlck
2R	10020124	2R_10020124_SNP [dm3] 2R_14132619_SNP [dm6]	C	T	1.268e^-4	0.91	INTRON Prosap	TF binding site mE1_TFBS_inv
2L	19213243	2L_19213243_SNP [dm3] 2L_19213243_SNP [dm6]	G	A	1.271e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16059270	3L_16059270_SNP [dm3] 3L_16066170_SNP [dm6]	A	T	1.275e^-4	0.91	INTRON Mbs
X	11734890	X_11734890_SNP [dm3] X_11840857_SNP [dm6]	C	T	1.285e^-4	0.91	SPLICE_SITE_REGION Cyp28c1 INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2L	11951310	2L_11951310_SNP [dm3] 2L_11951310_SNP [dm6]	G	A	1.287e^-4	0.91	DOWNSTREAM CR43314 INTERGENIC
4	1048713	4_1048713_SNP [dm3] 4_1028087_SNP [dm6]	C	T	1.288e^-4	0.91	UPSTREAM PlexA & 1 other DOWNSTREAM CG11077 INTRON CR44031	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
4	997449	4_997449_SNP [dm3] 4_976823_SNP [dm6]	T	G	1.288e^-4	0.91	UPSTREAM fuss INTRON fuss EXON sphinx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10350881	3R_10350881_SNP [dm3] 3R_14525159_SNP [dm6]	C	G	1.288e^-4	0.91	INTRON Pde6
3R	26499544	3R_26499544_SNP [dm3] 3R_30673822_SNP [dm6]	T	A	1.290e^-4	0.91	INTERGENIC
2R	10135076	2R_10135076_SNP [dm3] 2R_14247571_SNP [dm6]	T	C	1.291e^-4	0.91	INTRON Mdr50
3R	10554276	3R_10554276_SNP [dm3] 3R_14728554_SNP [dm6]	C	A	1.297e^-4	0.91	INTRON CG7530
2L	14318684	2L_14318684_SNP [dm3] 2L_14318684_SNP [dm6]	G	A	1.299e^-4	0.91	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14318696	2L_14318696_SNP [dm3] 2L_14318696_SNP [dm6]	G	A	1.299e^-4	0.91	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	8384347	2L_8384347_SNP [dm3] 2L_8384347_SNP [dm6]	A	T	1.301e^-4	0.91	UPSTREAM CG13384 & 1 other DOWNSTREAM Rcd4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	9089164	2L_9089164_SNP [dm3] 2L_9089164_SNP [dm6]	C	T	1.302e^-4	0.91	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23380607	3R_23380607_SNP [dm3] 3R_27554885_SNP [dm6]	T	C	1.303e^-4	0.91	INTRON Klp98A
X	4750164	X_4750164_SNP [dm3] X_4856131_SNP [dm6]	T	G	1.304e^-4	0.91	INTRON CG42594
4	438811	4_438811_SNP [dm3] 4_418185_SNP [dm6]	C	T	1.306e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17375840	2L_17375840_SNP [dm3] 2L_17375840_SNP [dm6]	C	T	1.312e^-4	0.91	INTRON Lrch	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19488366	2L_19488366_SNP [dm3] 2L_19488366_SNP [dm6]	A	T	1.324e^-4	0.91	SYNONYMOUS_CODING CG13083 DOWNSTREAM CG10194
2R	10019993	2R_10019993_SNP [dm3] 2R_14132488_SNP [dm6]	C	G	1.327e^-4	0.91	INTRON Prosap	TF binding site mE1_TFBS_inv
2L	14318733	2L_14318733_INS [dm3] 2L_14318733_INS [dm6]	A	AGTGCGAA	1.332e^-4	0.91	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1932902	2L_1932902_SNP [dm3] 2L_1932902_SNP [dm6]	G	T	1.335e^-4	0.91	INTRON CG7337
3L	17488609	3L_17488609_SNP [dm3] 3L_17495509_SNP [dm6]	C	A	1.338e^-4	0.91	DOWNSTREAM edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	21363703	X_21363703_SNP [dm3] X_21492676_SNP [dm6]	C	T	1.343e^-4	0.91	INTERGENIC
2L	19759983	2L_19759983_SNP [dm3] 2L_19759983_SNP [dm6]	G	A	1.345e^-4	0.91	SYNONYMOUS_CODING CG10463	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19781924	2L_19781924_SNP [dm3] 2L_19781924_SNP [dm6]	G	A	1.350e^-4	0.91	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad
2L	3398368	2L_3398368_SNP [dm3] 2L_3398368_SNP [dm6]	G	A	1.351e^-4	0.91	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
3L	10695005	3L_10695005_SNP [dm3] 3L_10701905_SNP [dm6]	T	A	1.352e^-4	0.91	INTERGENIC
X	2975316	X_2975316_SNP [dm3] X_3081283_SNP [dm6]	G	A	1.352e^-4	0.91	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19354182	3R_19354182_SNP [dm3] 3R_23528460_SNP [dm6]	G	T	1.353e^-4	0.91	INTRON CG10175	TF binding site mE1_TFBS_cad
4	690800	4_690800_SNP [dm3] 4_670174_SNP [dm6]	T	C	1.358e^-4	0.91	UPSTREAM CG11360 DOWNSTREAM Slip1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	4948328	3L_4948328_SNP [dm3] 3L_4948328_SNP [dm6]	G	A	1.359e^-4	0.91	INTRON Con
3R	22855114	3R_22855114_SNP [dm3] 3R_27029392_SNP [dm6]	C	T	1.359e^-4	0.91	INTRON RYa-R
X	2975350	X_2975350_SNP [dm3] X_3081317_SNP [dm6]	T	A	1.363e^-4	0.91	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2855244	2R_2855244_SNP [dm3] 2R_6967739_SNP [dm6]	C	G	1.371e^-4	0.91	INTRON mim & 1 other
3L	719364	3L_719364_SNP [dm3] 3L_719364_SNP [dm6]	C	A	1.381e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	710919	2L_710919_SNP [dm3] 2L_710919_SNP [dm6]	C	A	1.392e^-4	0.91	INTRON ds & 1 other
2L	11951338	2L_11951338_SNP [dm3] 2L_11951338_SNP [dm6]	T	G	1.405e^-4	0.91	DOWNSTREAM CR43314 INTERGENIC
2R	11903388	2R_11903388_SNP [dm3] 2R_16015883_SNP [dm6]	A	G	1.405e^-4	0.91	SYNONYMOUS_CODING Rrp42 DOWNSTREAM CG8397	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	9271115	3R_9271115_SNP [dm3] 3R_13445393_SNP [dm6]	A	G	1.408e^-4	0.91	INTERGENIC
2L	952245	2L_952245_SNP [dm3] 2L_952245_SNP [dm6]	A	T	1.422e^-4	0.91	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7662043	3R_7662043_SNP [dm3] 3R_11836321_SNP [dm6]	C	G	1.428e^-4	0.91	INTRON CG6959
2L	19421461	2L_19421461_SNP [dm3] 2L_19421461_SNP [dm6]	T	C	1.438e^-4	0.91	INTRON Pax
3R	1140974	3R_1140974_SNP [dm3] 3R_5315252_SNP [dm6]	G	A	1.444e^-4	0.91	INTRON mtd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	159773	4_159773_SNP [dm3] 4_139147_SNP [dm6]	A	G	1.454e^-4	0.91	INTRON CG32000	transposable element FlyBase
2R	10011562	2R_10011562_SNP [dm3] 2R_14124057_SNP [dm6]	G	T	1.455e^-4	0.91	INTRON Prosap
3L	9602219	3L_9602219_SNP [dm3] 3L_9609119_SNP [dm6]	A	G	1.458e^-4	0.91	SYNONYMOUS_CODING CG3280
4	476928	4_476928_SNP [dm3] 4_456302_SNP [dm6]	A	G	1.460e^-4	0.91	INTERGENIC	transposable element FlyBase
3L	2692438	3L_2692438_SNP [dm3] 3L_2692438_SNP [dm6]	T	C	1.473e^-4	0.91	INTRON Fife
2L	163360	2L_163360_SNP [dm3] 2L_163360_SNP [dm6]	G	A	1.478e^-4	0.91	INTRON spen	TF binding site BDTNP1_TFBS_dl
3L	1004156	3L_1004156_SNP [dm3] 3L_1004156_SNP [dm6]	T	C	1.483e^-4	0.91	INTRON trio
2R	20180461	2R_20180461_SNP [dm3] 2R_24292938_SNP [dm6]	G	A	1.483e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12474288	2L_12474288_SNP [dm3] 2L_12474288_SNP [dm6]	G	T	1.485e^-4	0.91	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12624397	2R_12624397_SNP [dm3] 2R_16736892_SNP [dm6]	C	T	1.487e^-4	0.91	UTR_3_PRIME CG43104
3L	14539820	3L_14539820_DEL [dm3] 3L_14546720_DEL [dm6]	CTCC	C	1.511e^-4	0.91	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
2L	14035396	2L_14035396_DEL [dm3] 2L_14035396_DEL [dm6]	CTTCCGCCC	C	1.521e^-4	0.91	EXON CR45284
3L	13575701	3L_13575701_SNP [dm3] 3L_13582601_SNP [dm6]	G	T	1.523e^-4	0.91	INTRON bru-3
2L	11952251	2L_11952251_SNP [dm3] 2L_11952251_SNP [dm6]	C	G	1.543e^-4	0.91	EXON CR43314
2R	10163812	2R_10163812_SNP [dm3] 2R_14276307_SNP [dm6]	A	T	1.548e^-4	0.91	UTR_5_PRIME Ih DOWNSTREAM conv
X	16010249	X_16010249_SNP [dm3] X_16116216_SNP [dm6]	T	G	1.551e^-4	0.91	INTERGENIC
2L	1837303	2L_1837303_SNP [dm3] 2L_1837303_SNP [dm6]	T	A	1.561e^-4	0.91	UTR_5_PRIME wry INTRON wry
X	17175631	X_17175631_SNP [dm3] X_17281598_SNP [dm6]	G	A	1.571e^-4	0.91	UTR_3_PRIME CG8664 UPSTREAM CG5445 DOWNSTREAM CG8664 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1693192	2R_1693192_SNP [dm3] 2R_5805687_SNP [dm6]	C	T	1.571e^-4	0.91	INTRON dpr12	TF binding site mE1_TFBS_cad
2L	12762954	2L_12762954_SNP [dm3] 2L_12762954_SNP [dm6]	A	T	1.572e^-4	0.91	INTERGENIC
3R	4615818	3R_4615818_SNP [dm3] 3R_8790096_SNP [dm6]	C	A	1.573e^-4	0.91	INTRON Pif1B & 1 other
X	13399101	X_13399101_SNP [dm3] X_13505068_SNP [dm6]	T	G	1.575e^-4	0.91	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15090489	2L_15090489_SNP [dm3] 2L_15090489_SNP [dm6]	T	A	1.585e^-4	0.91	INTRON CG15270
2R	19513322	2R_19513322_SNP [dm3] 2R_23625799_SNP [dm6]	A	T	1.588e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11953507	2L_11953507_INS [dm3] 2L_11953507_INS [dm6]	A	AA	1.590e^-4	0.91	UPSTREAM bft EXON CR43314
2L	17384410	2L_17384410_SNP [dm3] 2L_17384410_SNP [dm6]	A	T	1.598e^-4	0.91	UPSTREAM CLIP-190 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	19354207	3R_19354207_SNP [dm3] 3R_23528485_SNP [dm6]	T	A	1.613e^-4	0.91	INTRON CG10175	TF binding site mE1_TFBS_cad
3R	14699055	3R_14699055_SNP [dm3] 3R_18873333_SNP [dm6]	A	T	1.614e^-4	0.91	INTERGENIC
3L	9626344	3L_9626344_SNP [dm3] 3L_9633244_SNP [dm6]	T	C	1.616e^-4	0.91	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11955530	2L_11955530_SNP [dm3] 2L_11955530_SNP [dm6]	T	A	1.623e^-4	0.91	DOWNSTREAM CR43314 EXON CR43314	TF binding site mE1_TFBS_cnc
X	4077140	X_4077140_SNP [dm3] X_4183107_SNP [dm6]	G	A	1.625e^-4	0.91	INTRON Fas2
3R	19365791	3R_19365791_SNP [dm3] 3R_23540069_SNP [dm6]	T	G	1.627e^-4	0.91	INTERGENIC
2L	12175956	2L_12175956_SNP [dm3] 2L_12175956_SNP [dm6]	C	T	1.637e^-4	0.91	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
3L	7858776	3L_7858776_SNP [dm3] 3L_7865676_SNP [dm6]	T	A	1.651e^-4	0.91	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	8363729	3R_8363729_SNP [dm3] 3R_12538007_SNP [dm6]	G	T	1.657e^-4	0.91	INTRON Octbeta3R
2L	14318711	2L_14318711_MNP [dm3] 2L_14318711_MNP [dm6]	CCA	TTT	1.662e^-4	0.91	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	4788641	3L_4788641_SNP [dm3] 3L_4788641_SNP [dm6]	T	C	1.662e^-4	0.91	INTRON RhoGEF64C
3R	14033233	3R_14033233_SNP [dm3] 3R_18207511_SNP [dm6]	A	T	1.662e^-4	0.91	INTRON CG7985
X	2757420	X_2757420_SNP [dm3] X_2863387_SNP [dm6]	A	G	1.664e^-4	0.91	INTRON kirre
3L	10745432	3L_10745432_SNP [dm3] 3L_10752332_SNP [dm6]	C	G	1.671e^-4	0.91	INTERGENIC
2L	12176266	2L_12176266_DEL [dm3] 2L_12176266_DEL [dm6]	GGGTATATTTTACACTATTC...	A	1.675e^-4	0.91	INTRON aret & 1 other
2R	1548708	2R_1548708_SNP [dm3] 2R_5661203_SNP [dm6]	A	T	1.676e^-4	0.91	INTRON Not3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19101105	2R_19101105_SNP [dm3] 2R_23213582_SNP [dm6]	A	C	1.679e^-4	0.91	INTERGENIC
3R	10351326	3R_10351326_SNP [dm3] 3R_14525604_SNP [dm6]	A	G	1.681e^-4	0.91	INTRON Pde6
3L	13705245	3L_13705245_SNP [dm3] 3L_13712145_SNP [dm6]	A	T	1.686e^-4	0.91	INTRON bru-3
3L	18564497	3L_18564497_SNP [dm3] 3L_18571397_SNP [dm6]	T	G	1.687e^-4	0.91	INTRON AstC-R1
3R	10364011	3R_10364011_SNP [dm3] 3R_14538289_SNP [dm6]	G	C	1.687e^-4	0.91	INTRON Pde6
X	3205223	X_3205223_DEL [dm3] X_3311190_DEL [dm6]	AA	A	1.695e^-4	0.91	INTRON dnc
3R	7663675	3R_7663675_SNP [dm3] 3R_11837953_SNP [dm6]	T	G	1.702e^-4	0.91	INTRON CG6959
2R	8426995	2R_8426995_SNP [dm3] 2R_12539490_SNP [dm6]	A	G	1.703e^-4	0.91	INTRON fra
3R	16993824	3R_16993824_SNP [dm3] 3R_21168102_SNP [dm6]	G	T	1.707e^-4	0.91	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
2R	6596981	2R_6596981_SNP [dm3] 2R_10709476_SNP [dm6]	A	T	1.707e^-4	0.91	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2R	10135068	2R_10135068_SNP [dm3] 2R_14247563_SNP [dm6]	T	G	1.709e^-4	0.91	INTRON Mdr50
3L	3417363	3L_3417363_SNP [dm3] 3L_3417363_SNP [dm6]	G	T	1.722e^-4	0.91	UTR_5_PRIME sty INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z
X	8138926	X_8138926_SNP [dm3] X_8244893_SNP [dm6]	C	G	1.723e^-4	0.91	UPSTREAM sni INTRON Trxr-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
4	299242	4_299242_SNP [dm3] 4_278616_SNP [dm6]	G	T	1.723e^-4	0.91	DOWNSTREAM Syt7 & 1 other INTERGENIC
2R	9550874	2R_9550874_SNP [dm3] 2R_13663369_SNP [dm6]	T	C	1.725e^-4	0.91	NON_SYNONYMOUS_CODING CG6209 INTRON fas
2R	10133813	2R_10133813_SNP [dm3] 2R_14246308_SNP [dm6]	G	A	1.730e^-4	0.91	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
3R	17620611	3R_17620611_SNP [dm3] 3R_21794889_SNP [dm6]	T	C	1.730e^-4	0.91	INTRON CASK	TF binding site BDTNP1_TFBS_twi
3R	13980637	3R_13980637_SNP [dm3] 3R_18154915_SNP [dm6]	T	G	1.746e^-4	0.91	INTERGENIC
3L	19262452	3L_19262452_SNP [dm3] 3L_19269352_SNP [dm6]	A	T	1.749e^-4	0.91	UTR_5_PRIME CG14085 UPSTREAM CG9629 DOWNSTREAM CG14088
X	8138969	X_8138969_SNP [dm3] X_8244936_SNP [dm6]	T	C	1.750e^-4	0.91	UPSTREAM sni INTRON Trxr-1	TF binding site mE1_TFBS_cnc
3R	10362132	3R_10362132_SNP [dm3] 3R_14536410_SNP [dm6]	T	A	1.756e^-4	0.91	INTRON Pde6
2R	9214440	2R_9214440_SNP [dm3] 2R_13326935_SNP [dm6]	C	T	1.756e^-4	0.91	INTERGENIC
3R	12707311	3R_12707311_SNP [dm3] 3R_16881589_SNP [dm6]	T	C	1.757e^-4	0.91	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	10349711	3R_10349711_SNP [dm3] 3R_14523989_SNP [dm6]	C	T	1.759e^-4	0.91	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	9507168	2L_9507168_INS [dm3] 2L_9507168_INS [dm6]	A	AAAA	1.762e^-4	0.91	INTRON CG33298
3L	13242575	3L_13242575_SNP [dm3] 3L_13249475_SNP [dm6]	C	T	1.763e^-4	0.91	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3R	19365803	3R_19365803_SNP [dm3] 3R_23540081_SNP [dm6]	T	C	1.763e^-4	0.91	INTERGENIC
3R	8363978	3R_8363978_SNP [dm3] 3R_12538256_SNP [dm6]	C	A	1.773e^-4	0.91	INTRON Octbeta3R
3L	439457	3L_439457_SNP [dm3] 3L_439457_SNP [dm6]	C	G	1.778e^-4	0.91	INTRON klar
3L	4910580	3L_4910580_DEL [dm3] 3L_4910580_DEL [dm6]	AA	A	1.782e^-4	0.91	UTR_5_PRIME Rh50
2R	9550714	2R_9550714_SNP [dm3] 2R_13663209_SNP [dm6]	T	C	1.784e^-4	0.91	NON_SYNONYMOUS_CODING CG6209 INTRON fas
4	722505	4_722505_SNP [dm3] 4_701879_SNP [dm6]	G	C	1.786e^-4	0.91	INTRON ey	regulatory region REDfly_CRMs
X	16892164	X_16892164_SNP [dm3] X_16998131_SNP [dm6]	G	T	1.791e^-4	0.91	INTRON CG45002
2L	6005436	2L_6005436_SNP [dm3] 2L_6005436_SNP [dm6]	C	T	1.794e^-4	0.91	SYNONYMOUS_CODING Gal EXON CR43866	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4098698	3L_4098698_SNP [dm3] 3L_4098698_SNP [dm6]	G	A	1.795e^-4	0.91	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	9215243	2R_9215243_SNP [dm3] 2R_13327738_SNP [dm6]	T	C	1.801e^-4	0.91	INTERGENIC
3L	18826382	3L_18826382_SNP [dm3] 3L_18833282_SNP [dm6]	T	A	1.807e^-4	0.91	INTRON Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	721560	2L_721560_DEL [dm3] 2L_721560_DEL [dm6]	AACTGAA	A	1.813e^-4	0.91	INTERGENIC
2L	7055696	2L_7055696_SNP [dm3] 2L_7055696_SNP [dm6]	G	A	1.822e^-4	0.91	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14319218	2L_14319218_SNP [dm3] 2L_14319218_SNP [dm6]	G	T	1.828e^-4	0.91	INTRON wb
3R	14757968	3R_14757968_SNP [dm3] 3R_18932246_SNP [dm6]	T	A	1.830e^-4	0.91	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10351327	3R_10351327_SNP [dm3] 3R_14525605_SNP [dm6]	T	C	1.832e^-4	0.91	INTRON Pde6
3L	2287465	3L_2287465_SNP [dm3] 3L_2287465_SNP [dm6]	C	T	1.840e^-4	0.91	INTRON MsR2
3L	7859004	3L_7859004_SNP [dm3] 3L_7865904_SNP [dm6]	C	T	1.849e^-4	0.91	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	8448624	3L_8448624_SNP [dm3] 3L_8455524_SNP [dm6]	T	A	1.853e^-4	0.91	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16772675	3L_16772675_SNP [dm3] 3L_16779575_SNP [dm6]	G	C	1.859e^-4	0.91	UTR_5_PRIME CG13025 UPSTREAM CG9705	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	9951312	3R_9951312_SNP [dm3] 3R_14125590_SNP [dm6]	A	G	1.861e^-4	0.91	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17238791	2R_17238791_SNP [dm3] 2R_21351286_SNP [dm6]	A	G	1.863e^-4	0.91	UPSTREAM CG17974 INTERGENIC
2L	1834490	2L_1834490_SNP [dm3] 2L_1834490_SNP [dm6]	A	G	1.873e^-4	0.91	INTERGENIC
X	16890971	X_16890971_SNP [dm3] X_16996938_SNP [dm6]	G	A	1.877e^-4	0.91	INTRON CG45002
X	15144531	X_15144531_SNP [dm3] X_15250498_SNP [dm6]	C	T	1.883e^-4	0.91	INTERGENIC
2R	9916174	2R_9916174_SNP [dm3] 2R_14028669_SNP [dm6]	T	C	1.886e^-4	0.91	UTR_5_PRIME CG18371 INTRON mam
X	2975246	X_2975246_SNP [dm3] X_3081213_SNP [dm6]	T	A	1.890e^-4	0.91	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25127144	3R_25127144_INS [dm3] 3R_29301422_INS [dm6]	C	CATC	1.901e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19229629	2L_19229629_SNP [dm3] 2L_19229629_SNP [dm6]	C	T	1.907e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	23670351	3R_23670351_SNP [dm3] 3R_27844629_SNP [dm6]	C	T	1.918e^-4	0.91	UPSTREAM Or98P INTRON CG34353
3R	10351632	3R_10351632_SNP [dm3] 3R_14525910_SNP [dm6]	G	A	1.922e^-4	0.91	INTRON Pde6
X	15419293	X_15419293_SNP [dm3] X_15525260_SNP [dm6]	T	G	1.935e^-4	0.91	INTRON Ac13E
X	17233663	X_17233663_SNP [dm3] X_17339630_SNP [dm6]	T	G	1.938e^-4	0.91	INTERGENIC
3R	23723780	3R_23723780_SNP [dm3] 3R_27898058_SNP [dm6]	C	T	1.942e^-4	0.91	INTRON CG34353
3R	6860314	3R_6860314_SNP [dm3] 3R_11034592_SNP [dm6]	A	C	1.953e^-4	0.91	INTRON CG34114
2L	11953674	2L_11953674_SNP [dm3] 2L_11953674_SNP [dm6]	A	T	1.953e^-4	0.91	UPSTREAM bft EXON CR43314
3R	15093292	3R_15093292_SNP [dm3] 3R_19267570_SNP [dm6]	C	T	1.956e^-4	0.91	INTERGENIC
X	14548571	X_14548571_SNP [dm3] X_14654538_SNP [dm6]	C	A	1.959e^-4	0.91	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	20093734	3L_20093734_SNP [dm3] 3L_20100634_SNP [dm6]	C	A	1.972e^-4	0.91	NON_SYNONYMOUS_CODING CG14186	TF binding site mE1_TFBS_cad
2L	8651008	2L_8651008_DEL [dm3] 2L_8651008_DEL [dm6]	ATA	A	1.976e^-4	0.91	INTRON Sema-1a
2R	12624394	2R_12624394_SNP [dm3] 2R_16736889_SNP [dm6]	T	A	1.984e^-4	0.91	UTR_3_PRIME CG43104
3R	12344912	3R_12344912_DEL [dm3] 3R_16519190_DEL [dm6]	TT	T	1.997e^-4	0.91	INTRON CG42342
X	8138940	X_8138940_SNP [dm3] X_8244907_SNP [dm6]	C	T	2.005e^-4	0.91	UPSTREAM sni INTRON Trxr-1	TF binding site mE1_TFBS_cnc
2L	12566204	2L_12566204_SNP [dm3] 2L_12566204_SNP [dm6]	G	A	2.007e^-4	0.91	INTERGENIC
X	6711495	X_6711495_SNP [dm3] X_6817462_SNP [dm6]	G	A	2.010e^-4	0.91	SYNONYMOUS_CODING iav DOWNSTREAM Nf-YC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6538327	3L_6538327_SNP [dm3] 3L_6545227_SNP [dm6]	G	A	2.025e^-4	0.91	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_sens
3L	10834235	3L_10834235_SNP [dm3] 3L_10841135_SNP [dm6]	G	A	2.025e^-4	0.91	INTERGENIC
4	701788	4_701788_SNP [dm3] 4_681162_SNP [dm6]	C	T	2.026e^-4	0.91	INTRON CG11360	TF binding site BDTNP1_TFBS_dl
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	2.030e^-4	0.91	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11951333	2L_11951333_SNP [dm3] 2L_11951333_SNP [dm6]	C	T	2.033e^-4	0.91	DOWNSTREAM CR43314 INTERGENIC
3L	986498	3L_986498_SNP [dm3] 3L_986498_SNP [dm6]	A	T	2.051e^-4	0.91	DOWNSTREAM Glut1 INTRON Glut1
4	214143	4_214143_SNP [dm3] 4_193517_SNP [dm6]	T	C	2.052e^-4	0.91	UPSTREAM CG2316 INTRON CG2316	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20041340	3L_20041340_DEL [dm3] 3L_20048240_DEL [dm6]	TTGCTCGGCAAT...	T	2.063e^-4	0.91	INTERGENIC
3R	9914204	3R_9914204_SNP [dm3] 3R_14088482_SNP [dm6]	T	C	2.064e^-4	0.91	DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10372298	3R_10372298_SNP [dm3] 3R_14546576_SNP [dm6]	G	A	2.070e^-4	0.91	INTRON Pde6
2L	10551000	2L_10551000_SNP [dm3] 2L_10551000_SNP [dm6]	C	A	2.070e^-4	0.91	INTRON Trim9
3R	19353953	3R_19353953_SNP [dm3] 3R_23528231_SNP [dm6]	C	T	2.076e^-4	0.91	UPSTREAM CG10175 INTRON CG10175	TF binding site mE1_TFBS_cad
2R	12449036	2R_12449036_SNP [dm3] 2R_16561531_SNP [dm6]	G	C	2.078e^-4	0.91	INTRON DAT
3L	17558667	3L_17558667_SNP [dm3] 3L_17565567_SNP [dm6]	T	C	2.078e^-4	0.91	NON_SYNONYMOUS_CODING Eip74EF DOWNSTREAM snoRNA:Me28S-A576
2R	11735502	2R_11735502_SNP [dm3] 2R_15847997_SNP [dm6]	A	G	2.090e^-4	0.91	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
X	5721155	X_5721155_SNP [dm3] X_5827122_SNP [dm6]	C	T	2.094e^-4	0.91	INTRON CG15765
2L	18483124	2L_18483124_SNP [dm3] 2L_18483124_SNP [dm6]	T	A	2.095e^-4	0.91	INTRON CG10283
2R	10021889	2R_10021889_SNP [dm3] 2R_14134384_SNP [dm6]	A	C	2.097e^-4	0.91	INTRON Prosap
2L	15000324	2L_15000324_SNP [dm3] 2L_15000324_SNP [dm6]	A	T	2.105e^-4	0.91	INTERGENIC
3R	4669439	3R_4669439_SNP [dm3] 3R_8843717_SNP [dm6]	A	T	2.118e^-4	0.91	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	10023090	2R_10023090_DEL [dm3] 2R_14135585_DEL [dm6]	CC	C	2.129e^-4	0.91	INTRON Prosap
3R	13422017	3R_13422017_SNP [dm3] 3R_17596295_SNP [dm6]	T	A	2.129e^-4	0.91	UPSTREAM CG7606 DOWNSTREAM Sgs5 INTERGENIC
3L	6308602	3L_6308602_SNP [dm3] 3L_6315502_SNP [dm6]	C	T	2.135e^-4	0.91	INTERGENIC	transposable element FlyBase
2L	15202209	2L_15202209_SNP [dm3] 2L_15202209_SNP [dm6]	G	C	2.142e^-4	0.91	UPSTREAM CR43357 & 1 other INTERGENIC
2L	13616970	2L_13616970_SNP [dm3] 2L_13616970_SNP [dm6]	C	T	2.144e^-4	0.91	INTRON kuz
2R	13803017	2R_13803017_SNP [dm3] 2R_17915512_SNP [dm6]	G	A	2.144e^-4	0.91	INTRON Elk
3R	10360763	3R_10360763_SNP [dm3] 3R_14535041_SNP [dm6]	C	G	2.159e^-4	0.91	INTRON Pde6
3L	15448415	3L_15448415_SNP [dm3] 3L_15455315_SNP [dm6]	G	A	2.159e^-4	0.91	INTERGENIC
3L	11131837	3L_11131837_SNP [dm3] 3L_11138737_SNP [dm6]	T	C	2.175e^-4	0.91	INTRON CG32082
2R	14161027	2R_14161027_SNP [dm3] 2R_18273522_SNP [dm6]	G	A	2.178e^-4	0.91	INTERGENIC
2L	20904055	2L_20904055_INS [dm3] 2L_20904055_INS [dm6]	A	AA	2.181e^-4	0.91	INTRON sky & 1 other
2R	8120282	2R_8120282_SNP [dm3] 2R_12232777_SNP [dm6]	T	G	2.198e^-4	0.91	INTERGENIC
3L	4054720	3L_4054720_SNP [dm3] 3L_4054720_SNP [dm6]	T	C	2.201e^-4	0.91	INTRON CG1136
3R	25048556	3R_25048556_SNP [dm3] 3R_29222834_SNP [dm6]	G	A	2.209e^-4	0.91	UPSTREAM Brd8 DOWNSTREAM Ef1gamma INTRON CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	17387290	2L_17387290_SNP [dm3] 2L_17387290_SNP [dm6]	T	G	2.213e^-4	0.91	INTRON CLIP-190
3R	2748004	3R_2748004_SNP [dm3] 3R_6922282_SNP [dm6]	A	G	2.219e^-4	0.91	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6438323	X_6438323_SNP [dm3] X_6544290_SNP [dm6]	A	C	2.231e^-4	0.91	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
4	165663	4_165663_SNP [dm3] 4_145037_SNP [dm6]	C	T	2.234e^-4	0.91	INTERGENIC	transposable element FlyBase
X	8240645	X_8240645_SNP [dm3] X_8346612_SNP [dm6]	T	G	2.235e^-4	0.91	INTRON nAChRalpha3
2L	10015135	2L_10015135_SNP [dm3] 2L_10015135_SNP [dm6]	G	C	2.256e^-4	0.91	NON_SYNONYMOUS_CODING CG13131	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15524222	2L_15524222_SNP [dm3] 2L_15524222_SNP [dm6]	T	G	2.262e^-4	0.91	DOWNSTREAM CR43761 INTERGENIC
2L	6253930	2L_6253930_SNP [dm3] 2L_6253930_SNP [dm6]	A	G	2.277e^-4	0.91	INTRON Ddr	TF binding site mE1_TFBS_Trl
2R	13803014	2R_13803014_SNP [dm3] 2R_17915509_SNP [dm6]	T	C	2.285e^-4	0.91	INTRON Elk
3R	12705989	3R_12705989_SNP [dm3] 3R_16880267_SNP [dm6]	T	G	2.287e^-4	0.91	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	12542111	2R_12542111_SNP [dm3] 2R_16654606_SNP [dm6]	C	T	2.287e^-4	0.91	NON_SYNONYMOUS_CODING Nach DOWNSTREAM Picot
2R	11364015	2R_11364015_SNP [dm3] 2R_15476510_SNP [dm6]	G	A	2.291e^-4	0.91	INTRON CG8180
2R	13525466	2R_13525466_SNP [dm3] 2R_17637961_SNP [dm6]	C	A	2.292e^-4	0.91	INTRON CG10936
2L	4913399	2L_4913399_SNP [dm3] 2L_4913399_SNP [dm6]	C	A	2.299e^-4	0.91	INTRON hoe1
3R	3880387	3R_3880387_SNP [dm3] 3R_8054665_SNP [dm6]	T	G	2.312e^-4	0.91	INTRON CG43060
2L	4489205	2L_4489205_SNP [dm3] 2L_4489205_SNP [dm6]	C	A	2.313e^-4	0.91	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	12384098	2L_12384098_SNP [dm3] 2L_12384098_SNP [dm6]	A	G	2.314e^-4	0.91	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27361001	3R_27361001_SNP [dm3] 3R_31535279_SNP [dm6]	G	T	2.323e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	14324885	3L_14324885_SNP [dm3] 3L_14331785_SNP [dm6]	A	T	2.329e^-4	0.91	INTRON fz
2R	6392974	2R_6392974_SNP [dm3] 2R_10505469_SNP [dm6]	T	A	2.346e^-4	0.91	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	17901079	X_17901079_SNP [dm3] X_18007046_SNP [dm6]	T	C	2.348e^-4	0.91	SYNONYMOUS_CODING CG12672 INTRON Sh
2L	10086590	2L_10086590_SNP [dm3] 2L_10086590_SNP [dm6]	A	C	2.348e^-4	0.91	INTRON CG44153
3L	4483604	3L_4483604_SNP [dm3] 3L_4483604_SNP [dm6]	T	C	2.348e^-4	0.91	SYNONYMOUS_CODING CG11350
2L	17394685	2L_17394685_SNP [dm3] 2L_17394685_SNP [dm6]	C	G	2.352e^-4	0.91	INTRON CLIP-190
3R	9909111	3R_9909111_SNP [dm3] 3R_14083389_SNP [dm6]	G	A	2.352e^-4	0.91	INTRON foxo
2L	2464124	2L_2464124_SNP [dm3] 2L_2464124_SNP [dm6]	G	T	2.363e^-4	0.91	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	10699062	2L_10699062_SNP [dm3] 2L_10699062_SNP [dm6]	A	C	2.373e^-4	0.91	DOWNSTREAM CR44181 & 1 other INTERGENIC
X	15286551	X_15286551_SNP [dm3] X_15392518_SNP [dm6]	G	A	2.375e^-4	0.91	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
3L	14539827	3L_14539827_SNP [dm3] 3L_14546727_SNP [dm6]	T	C	2.384e^-4	0.91	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	2.386e^-4	0.91	INTRON CG17839
3L	14137399	3L_14137399_SNP [dm3] 3L_14144299_SNP [dm6]	A	G	2.387e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
2L	4746643	2L_4746643_SNP [dm3] 2L_4746643_SNP [dm6]	G	C	2.392e^-4	0.91	INTRON CG15630
X	14548968	X_14548968_SNP [dm3] X_14654935_SNP [dm6]	A	G	2.392e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	23950126	3R_23950126_SNP [dm3] 3R_28124404_SNP [dm6]	T	C	2.399e^-4	0.91	INTERGENIC
2L	15296387	2L_15296387_SNP [dm3] 2L_15296387_SNP [dm6]	G	A	2.400e^-4	0.91	EXON CR43764
2L	721574	2L_721574_INS [dm3] 2L_721574_INS [dm6]	T	TTCAGCT	2.406e^-4	0.91	INTERGENIC
2R	8121547	2R_8121547_INS [dm3] 2R_12234042_INS [dm6]	A	AGAA	2.407e^-4	0.91	EXON CR44313
3L	9592988	3L_9592988_SNP [dm3] 3L_9599888_SNP [dm6]	T	C	2.416e^-4	0.91	SYNONYMOUS_CODING CG3222 DOWNSTREAM CG3088	TF binding site mE1_TFBS_cad
2R	13129702	2R_13129702_SNP [dm3] 2R_17242197_SNP [dm6]	T	C	2.419e^-4	0.91	INTRON mbl
2L	22114877	2L_22114877_SNP [dm3] 2L_22114877_SNP [dm6]	G	T	2.421e^-4	0.91	INTERGENIC
X	8739620	X_8739620_SNP [dm3] X_8845587_SNP [dm6]	T	A	2.423e^-4	0.91	INTRON CG12075
X	16010255	X_16010255_SNP [dm3] X_16116222_SNP [dm6]	C	T	2.428e^-4	0.91	INTERGENIC	transposable element FlyBase
2R	10021894	2R_10021894_SNP [dm3] 2R_14134389_SNP [dm6]	A	C	2.439e^-4	0.91	INTRON Prosap
2L	21197889	2L_21197889_SNP [dm3] 2L_21197889_SNP [dm6]	G	A	2.440e^-4	0.91	INTRON Ret
4	320432	4_320432_SNP [dm3] 4_299806_SNP [dm6]	A	G	2.447e^-4	0.91	INTRON Syt7
X	6711393	X_6711393_SNP [dm3] X_6817360_SNP [dm6]	T	C	2.449e^-4	0.91	SYNONYMOUS_CODING iav DOWNSTREAM Nf-YC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9215922	2R_9215922_SNP [dm3] 2R_13328417_SNP [dm6]	C	A	2.453e^-4	0.91	DOWNSTREAM CR44206 & 1 other INTERGENIC
2L	3828124	2L_3828124_SNP [dm3] 2L_3828124_SNP [dm6]	G	T	2.459e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	9551141	2R_9551141_SNP [dm3] 2R_13663636_SNP [dm6]	A	T	2.460e^-4	0.91	UPSTREAM CG6209 INTRON fas
3R	23790410	3R_23790410_SNP [dm3] 3R_27964688_SNP [dm6]	C	A	2.461e^-4	0.91	SPLICE_SITE_REGION CG4849 INTRON CG4849	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8379298	2L_8379298_SNP [dm3] 2L_8379298_SNP [dm6]	G	C	2.463e^-4	0.91	SYNONYMOUS_CODING Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11734907	X_11734907_SNP [dm3] X_11840874_SNP [dm6]	T	G	2.465e^-4	0.91	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2L	9629483	2L_9629483_SNP [dm3] 2L_9629483_SNP [dm6]	A	C	2.466e^-4	0.91	INTERGENIC
2L	4485749	2L_4485749_SNP [dm3] 2L_4485749_SNP [dm6]	G	A	2.471e^-4	0.91	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25053322	3R_25053322_SNP [dm3] 3R_29227600_SNP [dm6]	T	C	2.471e^-4	0.91	SYNONYMOUS_CODING CG14507	TF binding site mE1_TFBS_chinmo
2L	11951327	2L_11951327_SNP [dm3] 2L_11951327_SNP [dm6]	G	T	2.474e^-4	0.91	DOWNSTREAM CR43314 INTERGENIC
3R	7666630	3R_7666630_DEL [dm3] 3R_11840908_DEL [dm6]	TT	T	2.480e^-4	0.91	INTRON CG6959
3R	8363891	3R_8363891_SNP [dm3] 3R_12538169_SNP [dm6]	T	C	2.495e^-4	0.91	INTRON Octbeta3R
X	18642655	X_18642655_SNP [dm3] X_18748622_SNP [dm6]	C	T	2.498e^-4	0.91	UPSTREAM CG12609 INTERGENIC
3L	9948879	3L_9948879_SNP [dm3] 3L_9955779_SNP [dm6]	G	A	2.506e^-4	0.91	SYNONYMOUS_CODING CG34356
2L	6253928	2L_6253928_DEL [dm3] 2L_6253928_DEL [dm6]	GG	G	2.508e^-4	0.91	INTRON Ddr	TF binding site mE1_TFBS_Trl
2R	1526937	2R_1526937_SNP [dm3] 2R_5639432_SNP [dm6]	T	A	2.508e^-4	0.91	INTERGENIC	transposable element FlyBase
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	2.508e^-4	0.91	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3R	5234298	3R_5234298_SNP [dm3] 3R_9408576_SNP [dm6]	G	A	2.509e^-4	0.91	UTR_3_PRIME betaTub85D UPSTREAM CG44261 DOWNSTREAM CG8135 & 1 other	TF binding site mE1_TFBS_cad
2L	8389396	2L_8389396_SNP [dm3] 2L_8389396_SNP [dm6]	T	C	2.511e^-4	0.91	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
3R	6279134	3R_6279134_DEL [dm3] 3R_10453412_DEL [dm6]	GAATAA	G	2.513e^-4	0.91	INTERGENIC
3L	14539813	3L_14539813_SNP [dm3] 3L_14546713_SNP [dm6]	T	A	2.520e^-4	0.91	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
3R	10557750	3R_10557750_SNP [dm3] 3R_14732028_SNP [dm6]	C	T	2.526e^-4	0.91	UPSTREAM CG7530 DOWNSTREAM eff INTERGENIC
2R	10135125	2R_10135125_SNP [dm3] 2R_14247620_SNP [dm6]	A	T	2.539e^-4	0.91	INTRON Mdr50
3R	19078967	3R_19078967_SNP [dm3] 3R_23253245_SNP [dm6]	A	G	2.543e^-4	0.91	SYNONYMOUS_CODING EloA
2R	15927590	2R_15927590_SNP [dm3] 2R_20040085_SNP [dm6]	G	T	2.543e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_sens
3L	12715400	3L_12715400_SNP [dm3] 3L_12722300_SNP [dm6]	G	A	2.544e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10349741	3R_10349741_SNP [dm3] 3R_14524019_SNP [dm6]	G	A	2.547e^-4	0.91	DOWNSTREAM Cyp313a1 INTRON Pde6
3R	21612474	3R_21612474_SNP [dm3] 3R_25786752_SNP [dm6]	C	T	2.549e^-4	0.91	SYNONYMOUS_CODING CG4960
3L	5354863	3L_5354863_SNP [dm3] 3L_5361763_SNP [dm6]	A	G	2.550e^-4	0.91	SYNONYMOUS_CODING CG4769
2L	4488433	2L_4488433_SNP [dm3] 2L_4488433_SNP [dm6]	T	C	2.551e^-4	0.91	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8964822	2R_8964822_SNP [dm3] 2R_13077317_SNP [dm6]	C	G	2.552e^-4	0.91	INTRON Drl-2	TF binding site mE1_TFBS_cad
X	13399006	X_13399006_SNP [dm3] X_13504973_SNP [dm6]	C	T	2.557e^-4	0.91	INTRON Neto
2R	10185018	2R_10185018_SNP [dm3] 2R_14297513_SNP [dm6]	G	A	2.559e^-4	0.91	INTRON Ih
2R	19100874	2R_19100874_SNP [dm3] 2R_23213351_SNP [dm6]	T	C	2.560e^-4	0.91	INTERGENIC
3R	6876903	3R_6876903_SNP [dm3] 3R_11051181_SNP [dm6]	G	T	2.565e^-4	0.91	INTERGENIC
2R	8994394	2R_8994394_SNP [dm3] 2R_13106889_SNP [dm6]	A	C	2.567e^-4	0.91	INTERGENIC
3L	17488587	3L_17488587_SNP [dm3] 3L_17495487_SNP [dm6]	T	A	2.568e^-4	0.91	DOWNSTREAM edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	4636269	3L_4636269_SNP [dm3] 3L_4636269_SNP [dm6]	C	T	2.569e^-4	0.91	DOWNSTREAM axo INTRON axo
4	739650	4_739650_SNP [dm3] 4_719024_SNP [dm6]	C	G	2.576e^-4	0.91	INTRON ey	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25898635	3R_25898635_SNP [dm3] 3R_30072913_SNP [dm6]	A	G	2.577e^-4	0.91	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22115261	2L_22115261_SNP [dm3] 2L_22115261_SNP [dm6]	A	G	2.582e^-4	0.91	INTERGENIC	transposable element FlyBase
2L	13329447	2L_13329447_SNP [dm3] 2L_13329447_SNP [dm6]	T	C	2.587e^-4	0.91	INTRON CG43778
X	8557315	X_8557315_SNP [dm3] X_8663282_SNP [dm6]	A	G	2.588e^-4	0.91	INTERGENIC
2L	17387520	2L_17387520_SNP [dm3] 2L_17387520_SNP [dm6]	C	A	2.592e^-4	0.91	INTRON CLIP-190
3L	5142227	3L_5142227_SNP [dm3] 3L_5149127_SNP [dm6]	A	C	2.592e^-4	0.91	NON_SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
3L	10694793	3L_10694793_SNP [dm3] 3L_10701693_SNP [dm6]	C	T	2.596e^-4	0.91	INTERGENIC
2L	17994056	2L_17994056_SNP [dm3] 2L_17994056_SNP [dm6]	T	A	2.599e^-4	0.91	EXON CR44767
3L	6538549	3L_6538549_SNP [dm3] 3L_6545449_SNP [dm6]	A	G	2.602e^-4	0.91	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10682622	2R_10682622_SNP [dm3] 2R_14795117_SNP [dm6]	T	C	2.602e^-4	0.91	INTRON kn
2R	9271220	2R_9271220_SNP [dm3] 2R_13383715_SNP [dm6]	G	C	2.603e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7082297	X_7082297_DEL [dm3] X_7188264_DEL [dm6]	AT	A	2.617e^-4	0.91	INTRON CG9650 & 1 other
X	3454654	X_3454654_SNP [dm3] X_3560621_SNP [dm6]	T	G	2.623e^-4	0.91	INTRON CG32791 & 1 other
3R	9961020	3R_9961020_SNP [dm3] 3R_14135298_SNP [dm6]	T	C	2.628e^-4	0.91	INTERGENIC
2R	9810120	2R_9810120_SNP [dm3] 2R_13922615_SNP [dm6]	C	T	2.632e^-4	0.91	INTRON shot
2L	2147510	2L_2147510_INS [dm3] 2L_2147510_INS [dm6]	A	AACTGA	2.638e^-4	0.91	UPSTREAM CG7261 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9961027	3R_9961027_SNP [dm3] 3R_14135305_SNP [dm6]	A	C	2.638e^-4	0.91	INTERGENIC
2L	15770460	2L_15770460_SNP [dm3] 2L_15770460_SNP [dm6]	T	C	2.646e^-4	0.91	SYNONYMOUS_CODING Ku80 DOWNSTREAM CG31826
2R	13226983	2R_13226983_SNP [dm3] 2R_17339478_SNP [dm6]	T	A	2.651e^-4	0.91	INTRON mbl
3R	6465924	3R_6465924_SNP [dm3] 3R_10640202_SNP [dm6]	T	A	2.653e^-4	0.91	UPSTREAM hth EXON CR44018	TF binding site BDTNP1_TFBS_twi
3R	17507752	3R_17507752_SNP [dm3] 3R_21682030_SNP [dm6]	G	A	2.659e^-4	0.91	INTRON CG31176
2L	4235084	2L_4235084_SNP [dm3] 2L_4235084_SNP [dm6]	G	T	2.666e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10719281	2R_10719281_SNP [dm3] 2R_14831776_SNP [dm6]	C	T	2.667e^-4	0.91	INTERGENIC
4	419832	4_419832_SNP [dm3] 4_399206_SNP [dm6]	T	C	2.668e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	15090473	2L_15090473_SNP [dm3] 2L_15090473_SNP [dm6]	G	A	2.674e^-4	0.91	INTRON CG15270
3R	6478538	3R_6478538_SNP [dm3] 3R_10652816_SNP [dm6]	T	A	2.679e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
2L	11932460	2L_11932460_SNP [dm3] 2L_11932460_SNP [dm6]	G	A	2.683e^-4	0.91	INTERGENIC
3R	19292348	3R_19292348_SNP [dm3] 3R_23466626_SNP [dm6]	A	G	2.698e^-4	0.91	INTRON CG4374
3L	12503650	3L_12503650_SNP [dm3] 3L_12510550_SNP [dm6]	A	G	2.710e^-4	0.91	SYNONYMOUS_CODING sti
3L	3978215	3L_3978215_SNP [dm3] 3L_3978215_SNP [dm6]	T	C	2.713e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6537548	3L_6537548_SNP [dm3] 3L_6544448_SNP [dm6]	C	T	2.716e^-4	0.91	INTRON sfl
3R	9996502	3R_9996502_SNP [dm3] 3R_14170780_SNP [dm6]	C	A	2.737e^-4	0.91	UTR_3_PRIME Dop1R1
3L	13705198	3L_13705198_SNP [dm3] 3L_13712098_SNP [dm6]	G	C	2.738e^-4	0.91	INTRON bru-3
2L	13329440	2L_13329440_SNP [dm3] 2L_13329440_SNP [dm6]	A	T	2.751e^-4	0.91	INTRON CG43778
2L	8661719	2L_8661719_SNP [dm3] 2L_8661719_SNP [dm6]	T	C	2.755e^-4	0.91	INTRON Sema-1a
2R	10133729	2R_10133729_SNP [dm3] 2R_14246224_SNP [dm6]	G	A	2.774e^-4	0.91	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
2L	13289682	2L_13289682_SNP [dm3] 2L_13289682_SNP [dm6]	T	C	2.775e^-4	0.91	UPSTREAM CG31729 & 1 other DOWNSTREAM Uvrag INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	8536572	2R_8536572_SNP [dm3] 2R_12649067_SNP [dm6]	A	G	2.777e^-4	0.91	UPSTREAM CG8785 INTERGENIC
3R	8363828	3R_8363828_SNP [dm3] 3R_12538106_SNP [dm6]	C	G	2.786e^-4	0.91	INTRON Octbeta3R
2R	17464124	2R_17464124_SNP [dm3] 2R_21576619_SNP [dm6]	C	A	2.790e^-4	0.91	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20940194	2L_20940194_SNP [dm3] 2L_20940194_SNP [dm6]	T	A	2.792e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17797520	2R_17797520_SNP [dm3] 2R_21910015_SNP [dm6]	C	A	2.794e^-4	0.91	INTRON Fili
2R	17797586	2R_17797586_SNP [dm3] 2R_21910081_SNP [dm6]	A	T	2.797e^-4	0.91	INTRON Fili
3L	7956418	3L_7956418_SNP [dm3] 3L_7963318_SNP [dm6]	G	T	2.799e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3902807	3R_3902807_SNP [dm3] 3R_8077085_SNP [dm6]	G	T	2.805e^-4	0.91	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11735896	2R_11735896_SNP [dm3] 2R_15848391_SNP [dm6]	T	A	2.811e^-4	0.91	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3L	7105632	3L_7105632_SNP [dm3] 3L_7112532_SNP [dm6]	C	A	2.818e^-4	0.91	INTRON form3
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	2.822e^-4	0.91	INTRON sls
2L	11953687	2L_11953687_SNP [dm3] 2L_11953687_SNP [dm6]	C	T	2.829e^-4	0.91	UPSTREAM bft EXON CR43314
2R	7015807	2R_7015807_SNP [dm3] 2R_11128302_SNP [dm6]	G	A	2.834e^-4	0.91	INTERGENIC
3R	10345867	3R_10345867_SNP [dm3] 3R_14520145_SNP [dm6]	T	C	2.842e^-4	0.91	UPSTREAM Cyp313a1 INTRON Pde6
2L	7318060	2L_7318060_SNP [dm3] 2L_7318060_SNP [dm6]	A	C	2.842e^-4	0.91	INTERGENIC
2L	6244178	2L_6244178_SNP [dm3] 2L_6244178_SNP [dm6]	C	A	2.843e^-4	0.91	INTERGENIC
2R	1709326	2R_1709326_SNP [dm3] 2R_5821821_SNP [dm6]	A	C	2.847e^-4	0.91	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4566465	3R_4566465_SNP [dm3] 3R_8740743_SNP [dm6]	G	A	2.848e^-4	0.91	INTRON CG9801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11951322	2L_11951322_SNP [dm3] 2L_11951322_SNP [dm6]	G	C	2.851e^-4	0.91	DOWNSTREAM CR43314 INTERGENIC
3L	14950355	3L_14950355_SNP [dm3] 3L_14957255_SNP [dm6]	A	G	2.852e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8965344	2R_8965344_SNP [dm3] 2R_13077839_SNP [dm6]	G	T	2.852e^-4	0.91	INTRON Drl-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
4	151797	4_151797_SNP [dm3] 4_131171_SNP [dm6]	A	T	2.863e^-4	0.91	INTERGENIC	transposable element FlyBase
4	412454	4_412454_SNP [dm3] 4_391828_SNP [dm6]	C	A	2.863e^-4	0.91	INTRON Lin29	transposable element FlyBase
X	1931084	X_1931084_SNP [dm3] X_2037051_SNP [dm6]	T	A	2.865e^-4	0.91	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6005432	2L_6005432_SNP [dm3] 2L_6005432_SNP [dm6]	G	T	2.865e^-4	0.91	NON_SYNONYMOUS_CODING Gal EXON CR43866	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	17390122	2L_17390122_SNP [dm3] 2L_17390122_SNP [dm6]	C	G	2.872e^-4	0.91	INTRON CLIP-190
2L	17385104	2L_17385104_SNP [dm3] 2L_17385104_SNP [dm6]	C	G	2.876e^-4	0.91	UTR_5_PRIME CLIP-190 UPSTREAM Lrch INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	9128545	2R_9128545_SNP [dm3] 2R_13241040_SNP [dm6]	T	C	2.879e^-4	0.91	DOWNSTREAM GstE14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7442281	2R_7442281_SNP [dm3] 2R_11554776_SNP [dm6]	T	C	2.880e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	9922562	X_9922562_SNP [dm3] X_10028529_SNP [dm6]	G	T	2.881e^-4	0.91	INTRON Cht6
3L	9622111	3L_9622111_SNP [dm3] 3L_9629011_SNP [dm6]	C	G	2.888e^-4	0.91	UPSTREAM CG8336 INTRON CG8336 & 1 other
3R	10349883	3R_10349883_SNP [dm3] 3R_14524161_SNP [dm6]	G	T	2.895e^-4	0.91	INTRON Pde6
2R	14161053	2R_14161053_SNP [dm3] 2R_18273548_SNP [dm6]	T	A	2.911e^-4	0.91	INTERGENIC
2L	17364324	2L_17364324_SNP [dm3] 2L_17364324_SNP [dm6]	G	A	2.921e^-4	0.91	UTR_3_PRIME CG31804
3R	14672915	3R_14672915_SNP [dm3] 3R_18847193_SNP [dm6]	A	G	2.922e^-4	0.91	INTRON CG18208
3L	11247539	3L_11247539_SNP [dm3] 3L_11254439_SNP [dm6]	T	C	2.926e^-4	0.91	SYNONYMOUS_CODING scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12336040	2R_12336040_SNP [dm3] 2R_16448535_SNP [dm6]	C	T	2.929e^-4	0.91	INTERGENIC
2L	11977634	2L_11977634_SNP [dm3] 2L_11977634_SNP [dm6]	A	G	2.934e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	951740	2L_951740_SNP [dm3] 2L_951740_SNP [dm6]	T	G	2.940e^-4	0.91	NON_SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16011808	X_16011808_SNP [dm3] X_16117775_SNP [dm6]	G	T	2.942e^-4	0.91	DOWNSTREAM disco-r INTERGENIC
X	3047551	X_3047551_SNP [dm3] X_3153518_SNP [dm6]	C	T	2.944e^-4	0.91	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14161062	2R_14161062_SNP [dm3] 2R_18273557_SNP [dm6]	A	C	2.953e^-4	0.91	INTERGENIC
2R	11735822	2R_11735822_SNP [dm3] 2R_15848317_SNP [dm6]	A	G	2.953e^-4	0.91	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	2.953e^-4	0.91	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	8120283	2R_8120283_SNP [dm3] 2R_12232778_SNP [dm6]	A	G	2.953e^-4	0.91	INTERGENIC
X	18652871	X_18652871_SNP [dm3] X_18758838_SNP [dm6]	A	G	2.955e^-4	0.91	INTERGENIC
3R	6772636	3R_6772636_SNP [dm3] 3R_10946914_SNP [dm6]	T	A	2.960e^-4	0.91	INTERGENIC
4	255942	4_255942_SNP [dm3] 4_235316_SNP [dm6]	C	T	2.967e^-4	0.91	INTRON CG1674	transposable element FlyBase
2R	19478133	2R_19478133_SNP [dm3] 2R_23590610_SNP [dm6]	A	G	2.972e^-4	0.91	INTRON apt
3L	7855019	3L_7855019_INS [dm3] 3L_7861919_INS [dm6]	T	CAA	2.978e^-4	0.91	INTRON Pdp1
3L	13705237	3L_13705237_SNP [dm3] 3L_13712137_SNP [dm6]	A	T	2.982e^-4	0.91	INTRON bru-3
2R	9551160	2R_9551160_SNP [dm3] 2R_13663655_SNP [dm6]	T	C	2.993e^-4	0.91	UPSTREAM CG6209 INTRON fas
2R	14399446	2R_14399446_SNP [dm3] 2R_18511941_SNP [dm6]	T	C	3.013e^-4	0.91	INTERGENIC
X	9978617	X_9978617_SNP [dm3] X_10084584_SNP [dm6]	C	T	3.017e^-4	0.91	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
2L	11951274	2L_11951274_SNP [dm3] 2L_11951274_SNP [dm6]	A	T	3.051e^-4	0.91	DOWNSTREAM CR43314 INTERGENIC
2L	10154000	2L_10154000_SNP [dm3] 2L_10154000_SNP [dm6]	A	G	3.054e^-4	0.91	SYNONYMOUS_CODING CG4839 INTRON CG44153
2R	10413988	2R_10413988_SNP [dm3] 2R_14526483_SNP [dm6]	T	A	3.059e^-4	0.91	UTR_5_PRIME ttv UPSTREAM ttv	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16462035	3L_16462035_SNP [dm3] 3L_16468935_SNP [dm6]	T	C	3.063e^-4	0.91	INTRON CG33158	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10345983	3R_10345983_SNP [dm3] 3R_14520261_SNP [dm6]	G	A	3.066e^-4	0.91	UPSTREAM Cyp313a1 INTRON Pde6
2L	10463980	2L_10463980_SNP [dm3] 2L_10463980_SNP [dm6]	C	T	3.070e^-4	0.91	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
2R	13227470	2R_13227470_SNP [dm3] 2R_17339965_SNP [dm6]	C	T	3.070e^-4	0.91	INTRON mbl
2L	14318892	2L_14318892_SNP [dm3] 2L_14318892_SNP [dm6]	C	T	3.072e^-4	0.91	INTRON wb	TF binding site mE1_TFBS_bab1
3L	12527759	3L_12527759_SNP [dm3] 3L_12534659_SNP [dm6]	C	G	3.077e^-4	0.91	NON_SYNONYMOUS_CODING CG10688 UPSTREAM Tsf2 DOWNSTREAM CG34242 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8370803	X_8370803_DEL [dm3] X_8476770_DEL [dm6]	TCT	T	3.082e^-4	0.91	UPSTREAM Cp7Fc DOWNSTREAM Cp7Fb INTRON CG33223
X	7739183	X_7739183_DEL [dm3] X_7845150_DEL [dm6]	ACA	A	3.084e^-4	0.91	INTERGENIC
2L	12688826	2L_12688826_DEL [dm3] 2L_12688826_DEL [dm6]	CTTTTCGCCC	C	3.085e^-4	0.91	INTERGENIC
3L	22900076	3L_22900076_SNP [dm3] 3L_22906976_SNP [dm6]	G	A	3.086e^-4	0.91	INTERGENIC
2L	17328814	2L_17328814_SNP [dm3] 2L_17328814_SNP [dm6]	T	C	3.087e^-4	0.91	INTERGENIC
3R	6478548	3R_6478548_SNP [dm3] 3R_10652826_SNP [dm6]	G	T	3.096e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
3L	14539815	3L_14539815_SNP [dm3] 3L_14546715_SNP [dm6]	C	A	3.096e^-4	0.91	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
2R	9550754	2R_9550754_SNP [dm3] 2R_13663249_SNP [dm6]	G	T	3.103e^-4	0.91	SYNONYMOUS_CODING CG6209 INTRON fas
3R	12373052	3R_12373052_SNP [dm3] 3R_16547330_SNP [dm6]	A	C	3.108e^-4	0.91	INTRON CG42342
2L	2473721	2L_2473721_SNP [dm3] 2L_2473721_SNP [dm6]	T	C	3.110e^-4	0.91	UPSTREAM CR45286 INTERGENIC	regulatory region REDfly_CRMs
3R	27480078	3R_27480078_SNP [dm3] 3R_31654356_SNP [dm6]	T	C	3.114e^-4	0.91	INTRON kek6	TF binding site mE1_TFBS_chinmo
3L	15151346	3L_15151346_SNP [dm3] 3L_15158246_SNP [dm6]	G	A	3.117e^-4	0.91	NON_SYNONYMOUS_CODING Msh6 UPSTREAM Prp31	TF binding site mE1_TFBS_run
2R	7445339	2R_7445339_DEL [dm3] 2R_11557834_DEL [dm6]	CT	C	3.123e^-4	0.91	INTERGENIC
3R	21921454	3R_21921454_INS [dm3] 3R_26095732_INS [dm6]	A	ATTTGAAGGCAACCAAACGC...	3.127e^-4	0.91	INTRON dys	regulatory region REDfly_CRMs
2R	20093633	2R_20093633_SNP [dm3] 2R_24206110_SNP [dm6]	C	G	3.131e^-4	0.91	INTRON CG11406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	8639055	2R_8639055_SNP [dm3] 2R_12751550_SNP [dm6]	T	A	3.139e^-4	0.91	UTR_3_PRIME mos DOWNSTREAM CG42663
3R	10897747	3R_10897747_SNP [dm3] 3R_15072025_SNP [dm6]	T	C	3.141e^-4	0.91	UTR_5_PRIME dpr9	TF binding site mE1_TFBS_cad
2L	17613305	2L_17613305_SNP [dm3] 2L_17613305_SNP [dm6]	C	T	3.141e^-4	0.91	INTERGENIC
2R	8122459	2R_8122459_SNP [dm3] 2R_12234954_SNP [dm6]	G	A	3.145e^-4	0.91	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	13486523	3R_13486523_SNP [dm3] 3R_17660801_SNP [dm6]	G	T	3.146e^-4	0.91	NON_SYNONYMOUS_CODING CG14322
X	2975099	X_2975099_SNP [dm3] X_3081066_SNP [dm6]	T	G	3.151e^-4	0.91	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2L	6243980	2L_6243980_SNP [dm3] 2L_6243980_SNP [dm6]	C	G	3.158e^-4	0.91	INTERGENIC
2R	10026513	2R_10026513_SNP [dm3] 2R_14139008_SNP [dm6]	C	T	3.162e^-4	0.91	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14114207	2L_14114207_SNP [dm3] 2L_14114207_SNP [dm6]	C	A	3.169e^-4	0.91	INTERGENIC
3R	8420562	3R_8420562_SNP [dm3] 3R_12594840_SNP [dm6]	C	T	3.171e^-4	0.91	UPSTREAM Octbeta2R INTRON Octbeta2R
2L	12762983	2L_12762983_SNP [dm3] 2L_12762983_SNP [dm6]	G	A	3.173e^-4	0.91	INTERGENIC
3L	13783200	3L_13783200_SNP [dm3] 3L_13790100_SNP [dm6]	C	T	3.179e^-4	0.91	INTRON bru-3
2L	14307185	2L_14307185_SNP [dm3] 2L_14307185_SNP [dm6]	T	A	3.183e^-4	0.91	INTRON wb
3L	5813049	3L_5813049_SNP [dm3] 3L_5819949_SNP [dm6]	A	G	3.192e^-4	0.91	INTRON vn
3R	26058359	3R_26058359_SNP [dm3] 3R_30232637_SNP [dm6]	A	G	3.195e^-4	0.91	INTERGENIC
4	1203962	4_1203962_SNP [dm3] 4_1183336_SNP [dm6]	T	A	3.200e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	12762956	2L_12762956_SNP [dm3] 2L_12762956_SNP [dm6]	G	A	3.201e^-4	0.91	INTERGENIC
3R	14699109	3R_14699109_SNP [dm3] 3R_18873387_SNP [dm6]	T	C	3.206e^-4	0.91	INTERGENIC
2R	16738722	2R_16738722_SNP [dm3] 2R_20851217_SNP [dm6]	T	C	3.210e^-4	0.91	INTRON CG9993	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	17390045	2L_17390045_SNP [dm3] 2L_17390045_SNP [dm6]	G	T	3.215e^-4	0.91	INTRON CLIP-190
2R	10136696	2R_10136696_DEL [dm3] 2R_14249191_DEL [dm6]	CAAGGGATACCAC...	C	3.219e^-4	0.91	CODON_DELETION Mdr50	TF binding site mE1_TFBS_cad
2R	20161110	2R_20161110_SNP [dm3] 2R_24273587_SNP [dm6]	C	G	3.233e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	10341647	3R_10341647_SNP [dm3] 3R_14515925_SNP [dm6]	C	T	3.238e^-4	0.91	SYNONYMOUS_CODING Pde6
3L	22903809	3L_22903809_SNP [dm3] 3L_22910709_SNP [dm6]	A	T	3.238e^-4	0.91	UPSTREAM CG12768 INTRON CG12768	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8385311	2L_8385311_SNP [dm3] 2L_8385311_SNP [dm6]	A	T	3.250e^-4	0.91	UPSTREAM CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18335310	X_18335310_SNP [dm3] X_18441277_SNP [dm6]	C	G	3.251e^-4	0.91	UPSTREAM CG32548 INTERGENIC
2R	15999620	2R_15999620_SNP [dm3] 2R_20112115_SNP [dm6]	T	C	3.255e^-4	0.91	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25050431	3R_25050431_SNP [dm3] 3R_29224709_SNP [dm6]	G	A	3.263e^-4	0.91	SYNONYMOUS_CODING Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10734834	2R_10734834_SNP [dm3] 2R_14847329_SNP [dm6]	T	C	3.269e^-4	0.91	NON_SYNONYMOUS_CODING CG10209	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	718856	3L_718856_SNP [dm3] 3L_718856_SNP [dm6]	T	C	3.269e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16540938	2L_16540938_SNP [dm3] 2L_16540938_SNP [dm6]	A	G	3.272e^-4	0.91	INTERGENIC
2L	8732294	2L_8732294_SNP [dm3] 2L_8732294_SNP [dm6]	A	G	3.275e^-4	0.91	INTRON raw
3L	3724365	3L_3724365_SNP [dm3] 3L_3724365_SNP [dm6]	G	A	3.290e^-4	0.91	INTRON CG32264
2L	18908704	2L_18908704_SNP [dm3] 2L_18908704_SNP [dm6]	T	A	3.310e^-4	0.91	INTERGENIC
3R	18683793	3R_18683793_SNP [dm3] 3R_22858071_SNP [dm6]	A	C	3.315e^-4	0.91	INTERGENIC
3L	15448406	3L_15448406_SNP [dm3] 3L_15455306_SNP [dm6]	G	A	3.317e^-4	0.91	INTERGENIC
X	3454612	X_3454612_SNP [dm3] X_3560579_SNP [dm6]	C	G	3.318e^-4	0.91	INTRON CG32791 & 1 other
X	3454830	X_3454830_SNP [dm3] X_3560797_SNP [dm6]	A	T	3.320e^-4	0.91	INTRON CG32791 & 1 other
2L	1036462	2L_1036462_SNP [dm3] 2L_1036462_SNP [dm6]	C	G	3.327e^-4	0.91	UPSTREAM CG4415 INTRON IA-2
2L	19030454	2L_19030454_SNP [dm3] 2L_19030454_SNP [dm6]	A	G	3.327e^-4	0.91	SYNONYMOUS_CODING Side DOWNSTREAM hk	TF binding site mE1_TFBS_chinmo
2R	8121537	2R_8121537_SNP [dm3] 2R_12234032_SNP [dm6]	A	G	3.330e^-4	0.91	EXON CR44313
3R	9909281	3R_9909281_SNP [dm3] 3R_14083559_SNP [dm6]	T	C	3.335e^-4	0.91	INTRON foxo
2R	7221118	2R_7221118_SNP [dm3] 2R_11333613_SNP [dm6]	T	C	3.345e^-4	0.91	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20949354	2L_20949354_SNP [dm3] 2L_20949354_SNP [dm6]	C	T	3.350e^-4	0.91	INTERGENIC
X	17901055	X_17901055_SNP [dm3] X_18007022_SNP [dm6]	A	G	3.357e^-4	0.91	SYNONYMOUS_CODING CG12672 INTRON Sh
3R	23784198	3R_23784198_SNP [dm3] 3R_27958476_SNP [dm6]	T	A	3.361e^-4	0.91	SYNONYMOUS_CODING CG42487 UTR_5_PRIME CG4884 UPSTREAM CG4884 DOWNSTREAM CG31253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	17383389	2L_17383389_SNP [dm3] 2L_17383389_SNP [dm6]	C	A	3.372e^-4	0.91	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	5654692	3R_5654692_SNP [dm3] 3R_9828970_SNP [dm6]	T	C	3.375e^-4	0.91	INTRON Teh1
2L	17959928	2L_17959928_SNP [dm3] 2L_17959928_SNP [dm6]	C	T	3.379e^-4	0.91	INTERGENIC
X	5368138	X_5368138_SNP [dm3] X_5474105_SNP [dm6]	A	G	3.396e^-4	0.91	INTRON SPR
3R	4639174	3R_4639174_SNP [dm3] 3R_8813452_SNP [dm6]	C	G	3.396e^-4	0.91	UTR_5_PRIME CG9837 DOWNSTREAM CG9821	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17605565	2L_17605565_SNP [dm3] 2L_17605565_SNP [dm6]	C	T	3.400e^-4	0.91	DOWNSTREAM CR44412 INTERGENIC
3R	21571185	3R_21571185_SNP [dm3] 3R_25745463_SNP [dm6]	G	A	3.411e^-4	0.91	SYNONYMOUS_CODING LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	17368461	2L_17368461_INS [dm3] 2L_17368461_INS [dm6]	T	TGTATT	3.417e^-4	0.91	DOWNSTREAM Lrch INTRON Lrch	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10215901	2R_10215901_SNP [dm3] 2R_14328396_SNP [dm6]	C	T	3.418e^-4	0.91	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2464288	2L_2464288_SNP [dm3] 2L_2464288_SNP [dm6]	G	C	3.421e^-4	0.91	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	11345533	2L_11345533_SNP [dm3] 2L_11345533_SNP [dm6]	C	T	3.423e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2208394	2L_2208394_SNP [dm3] 2L_2208394_SNP [dm6]	G	C	3.423e^-4	0.91	SYNONYMOUS_CODING CG33124
2L	22141767	2L_22141767_SNP [dm3] 2L_22141767_SNP [dm6]	G	A	3.425e^-4	0.91	SPLICE_SITE_REGION CG42748 SYNONYMOUS_CODING CG42748	TF binding site mE1_TFBS_cad
2L	2181268	2L_2181268_SNP [dm3] 2L_2181268_SNP [dm6]	A	T	3.426e^-4	0.91	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10185828	2R_10185828_SNP [dm3] 2R_14298323_SNP [dm6]	C	T	3.432e^-4	0.91	INTRON Ih
X	5546737	X_5546737_SNP [dm3] X_5652704_SNP [dm6]	C	A	3.436e^-4	0.91	UTR_3_PRIME CG42265
2R	1571413	2R_1571413_SNP [dm3] 2R_5683908_SNP [dm6]	A	C	3.440e^-4	0.91	INTRON scaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	15090483	2L_15090483_SNP [dm3] 2L_15090483_SNP [dm6]	T	C	3.440e^-4	0.91	INTRON CG15270
2L	2468121	2L_2468121_SNP [dm3] 2L_2468121_SNP [dm6]	G	A	3.448e^-4	0.91	INTERGENIC	enhancer FlyBase
3L	7852497	3L_7852497_SNP [dm3] 3L_7859397_SNP [dm6]	A	G	3.449e^-4	0.91	INTRON Pdp1
X	2609393	X_2609393_SNP [dm3] X_2715360_SNP [dm6]	C	T	3.452e^-4	0.91	SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_ttk
3L	10531653	3L_10531653_SNP [dm3] 3L_10538553_SNP [dm6]	A	T	3.453e^-4	0.91	INTRON A2bp1
2R	10135221	2R_10135221_SNP [dm3] 2R_14247716_SNP [dm6]	G	A	3.453e^-4	0.91	INTRON Mdr50
4	114941	4_114941_SNP [dm3] 4_94315_SNP [dm6]	A	G	3.454e^-4	0.91	INTRON pan
3R	26053027	3R_26053027_SNP [dm3] 3R_30227305_SNP [dm6]	G	C	3.456e^-4	0.91	INTERGENIC
4	799662	4_799662_SNP [dm3] 4_779036_SNP [dm6]	G	T	3.467e^-4	0.91	NON_SYNONYMOUS_CODING MED26
3L	6660023	3L_6660023_SNP [dm3] 3L_6666923_SNP [dm6]	A	C	3.469e^-4	0.91	SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
4	110164	4_110164_SNP [dm3] 4_89538_SNP [dm6]	G	T	3.487e^-4	0.91	UPSTREAM pan INTRON pan	TF binding site mE1_TFBS_bab1
3L	8879388	3L_8879388_SNP [dm3] 3L_8886288_SNP [dm6]	A	G	3.515e^-4	0.91	SYNONYMOUS_CODING dally
2R	17797739	2R_17797739_SNP [dm3] 2R_21910234_SNP [dm6]	T	G	3.519e^-4	0.91	INTRON Fili
3L	5779336	3L_5779336_DEL [dm3] 3L_5786236_DEL [dm6]	ACATGTGGTTATAA...	A	3.521e^-4	0.91	INTRON Cralbp
2L	19082746	2L_19082746_SNP [dm3] 2L_19082746_SNP [dm6]	T	G	3.525e^-4	0.91	UPSTREAM Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4054690	3L_4054690_SNP [dm3] 3L_4054690_SNP [dm6]	A	G	3.531e^-4	0.91	INTRON CG1136
X	21880181	X_21880181_SNP [dm3] X_22478345_SNP [dm6]	G	A	3.532e^-4	0.91	UPSTREAM CG12576 INTRON CG12576
2L	1648596	2L_1648596_SNP [dm3] 2L_1648596_SNP [dm6]	G	A	3.533e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22115236	2L_22115236_SNP [dm3] 2L_22115236_SNP [dm6]	T	G	3.534e^-4	0.91	INTERGENIC	transposable element FlyBase
2L	3815749	2L_3815749_SNP [dm3] 2L_3815749_SNP [dm6]	T	A	3.540e^-4	0.91	EXON CR44076	regulatory region REDfly_CRMs
2R	1526934	2R_1526934_SNP [dm3] 2R_5639429_SNP [dm6]	C	A	3.556e^-4	0.91	INTERGENIC	transposable element FlyBase
2R	12624402	2R_12624402_SNP [dm3] 2R_16736897_SNP [dm6]	T	C	3.559e^-4	0.91	UTR_3_PRIME CG43104
3R	10372207	3R_10372207_SNP [dm3] 3R_14546485_SNP [dm6]	C	T	3.560e^-4	0.91	INTRON Pde6
2R	13807883	2R_13807883_SNP [dm3] 2R_17920378_SNP [dm6]	G	A	3.562e^-4	0.91	INTRON Elk
3L	18033144	3L_18033144_SNP [dm3] 3L_18040044_SNP [dm6]	A	T	3.570e^-4	0.91	UPSTREAM CG32192 INTRON Eip75B
3L	9956589	3L_9956589_SNP [dm3] 3L_9963489_SNP [dm6]	C	G	3.573e^-4	0.91	INTRON CG34356
3R	14672986	3R_14672986_SNP [dm3] 3R_18847264_SNP [dm6]	G	T	3.583e^-4	0.91	INTRON CG18208
3R	15973105	3R_15973105_SNP [dm3] 3R_20147383_SNP [dm6]	G	A	3.593e^-4	0.91	INTERGENIC
2L	11296279	2L_11296279_SNP [dm3] 2L_11296279_SNP [dm6]	T	G	3.593e^-4	0.91	INTERGENIC
2R	14399122	2R_14399122_SNP [dm3] 2R_18511617_SNP [dm6]	A	G	3.600e^-4	0.91	INTERGENIC
3L	14539529	3L_14539529_SNP [dm3] 3L_14546429_SNP [dm6]	A	T	3.601e^-4	0.91	INTRON CG9238
3L	11170913	3L_11170913_SNP [dm3] 3L_11177813_SNP [dm6]	G	A	3.607e^-4	0.91	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
2R	10607572	2R_10607572_SNP [dm3] 2R_14720067_SNP [dm6]	T	A	3.607e^-4	0.91	INTERGENIC
2R	10152946	2R_10152946_SNP [dm3] 2R_14265441_SNP [dm6]	G	T	3.619e^-4	0.91	INTRON CG8547
2R	10116367	2R_10116367_SNP [dm3] 2R_14228862_SNP [dm6]	C	T	3.623e^-4	0.91	SYNONYMOUS_CODING CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25473660	3R_25473660_SNP [dm3] 3R_29647938_SNP [dm6]	T	A	3.625e^-4	0.91	INTRON Dop1R2
X	14548518	X_14548518_SNP [dm3] X_14654485_SNP [dm6]	A	C	3.628e^-4	0.91	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	20946960	2L_20946960_SNP [dm3] 2L_20946960_SNP [dm6]	T	G	3.632e^-4	0.91	DOWNSTREAM CR44606 INTERGENIC
X	17121512	X_17121512_SNP [dm3] X_17227479_SNP [dm6]	A	C	3.635e^-4	0.91	UPSTREAM CG10598 INTERGENIC
3L	440200	3L_440200_SNP [dm3] 3L_440200_SNP [dm6]	C	T	3.639e^-4	0.91	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13915432	3L_13915432_SNP [dm3] 3L_13922332_SNP [dm6]	T	C	3.648e^-4	0.91	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	12034680	2L_12034680_SNP [dm3] 2L_12034680_SNP [dm6]	A	C	3.650e^-4	0.91	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
2L	728625	2L_728625_SNP [dm3] 2L_728625_SNP [dm6]	A	G	3.652e^-4	0.91	NON_SYNONYMOUS_CODING Hsp60B
2R	10011859	2R_10011859_SNP [dm3] 2R_14124354_SNP [dm6]	C	G	3.661e^-4	0.91	INTRON Prosap
2L	10832223	2L_10832223_SNP [dm3] 2L_10832223_SNP [dm6]	T	A	3.665e^-4	0.91	INTRON Nos
2R	8964790	2R_8964790_SNP [dm3] 2R_13077285_SNP [dm6]	G	A	3.666e^-4	0.91	INTRON Drl-2	TF binding site mE1_TFBS_cad
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	3.668e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	4251383	3R_4251383_SNP [dm3] 3R_8425661_SNP [dm6]	A	G	3.678e^-4	0.91	INTRON CG45263
X	10023412	X_10023412_INS [dm3] X_10129379_INS [dm6]	A	AAAATGT	3.678e^-4	0.91	INTRON CR44894 & 1 other
X	10023414	X_10023414_DEL [dm3] X_10129381_DEL [dm6]	AGTAGT	A	3.678e^-4	0.91	INTRON CR44894 & 1 other
2R	11381135	2R_11381135_SNP [dm3] 2R_15493630_SNP [dm6]	G	A	3.682e^-4	0.91	INTRON CG12964
2L	2322018	2L_2322018_SNP [dm3] 2L_2322018_SNP [dm6]	T	C	3.686e^-4	0.91	INTRON CG9967 & 1 other
3L	540558	3L_540558_SNP [dm3] 3L_540558_SNP [dm6]	C	T	3.687e^-4	0.91	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14324702	3R_14324702_SNP [dm3] 3R_18498980_SNP [dm6]	A	G	3.688e^-4	0.91	INTRON fru
X	5617126	X_5617126_SNP [dm3] X_5723093_SNP [dm6]	C	T	3.689e^-4	0.91	INTRON CG32758
2R	2856115	2R_2856115_SNP [dm3] 2R_6968610_SNP [dm6]	C	T	3.695e^-4	0.91	INTRON mim & 1 other
2L	18915333	2L_18915333_SNP [dm3] 2L_18915333_SNP [dm6]	A	G	3.707e^-4	0.91	INTERGENIC
3L	719844	3L_719844_SNP [dm3] 3L_719844_SNP [dm6]	C	T	3.712e^-4	0.91	INTERGENIC
2L	10626636	2L_10626636_SNP [dm3] 2L_10626636_SNP [dm6]	A	G	3.715e^-4	0.91	INTRON Trim9
3L	5796894	3L_5796894_SNP [dm3] 3L_5803794_SNP [dm6]	A	C	3.718e^-4	0.91	UTR_5_PRIME CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_twi
3R	24033537	3R_24033537_SNP [dm3] 3R_28207815_SNP [dm6]	A	G	3.723e^-4	0.91	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9344914	2R_9344914_SNP [dm3] 2R_13457409_SNP [dm6]	T	C	3.730e^-4	0.91	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14673021	3R_14673021_SNP [dm3] 3R_18847299_SNP [dm6]	A	T	3.730e^-4	0.91	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20201142	2R_20201142_SNP [dm3] 2R_24313619_SNP [dm6]	T	A	3.732e^-4	0.91	DOWNSTREAM betaTub60D INTERGENIC	TF binding site mE1_TFBS_bab1
2L	11925975	2L_11925975_SNP [dm3] 2L_11925975_SNP [dm6]	T	A	3.733e^-4	0.91	INTRON Pde1c
2L	14318895	2L_14318895_SNP [dm3] 2L_14318895_SNP [dm6]	C	T	3.738e^-4	0.91	INTRON wb
X	3741268	X_3741268_SNP [dm3] X_3847235_SNP [dm6]	C	T	3.740e^-4	0.91	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	6438325	X_6438325_SNP [dm3] X_6544292_SNP [dm6]	G	T	3.750e^-4	0.91	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
X	13398348	X_13398348_INS [dm3] X_13504315_INS [dm6]	T	TTAAGAGCT	3.753e^-4	0.91	INTRON Neto	TF binding site mE1_TFBS_chinmo
3R	9767482	3R_9767482_SNP [dm3] 3R_13941760_SNP [dm6]	T	A	3.754e^-4	0.91	DOWNSTREAM Art9 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	26299449	3R_26299449_SNP [dm3] 3R_30473727_SNP [dm6]	T	C	3.764e^-4	0.91	INTRON PH4alphaEFB
X	13727826	X_13727826_SNP [dm3] X_13833793_SNP [dm6]	G	A	3.772e^-4	0.91	UTR_3_PRIME AMPdeam INTRON AMPdeam	TF binding site BDTNP1_TFBS_dl
2L	12175968	2L_12175968_SNP [dm3] 2L_12175968_SNP [dm6]	A	T	3.773e^-4	0.91	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	5104533	2L_5104533_SNP [dm3] 2L_5104533_SNP [dm6]	A	G	3.784e^-4	0.91	INTRON Msp300
3L	9601160	3L_9601160_SNP [dm3] 3L_9608060_SNP [dm6]	A	G	3.784e^-4	0.91	SYNONYMOUS_CODING CG3280
3R	6279155	3R_6279155_SNP [dm3] 3R_10453433_SNP [dm6]	T	A	3.786e^-4	0.91	INTERGENIC
X	5544356	X_5544356_SNP [dm3] X_5650323_SNP [dm6]	G	A	3.788e^-4	0.91	DOWNSTREAM CG42265 INTERGENIC
2L	11576639	2L_11576639_SNP [dm3] 2L_11576639_SNP [dm6]	T	A	3.793e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9778482	2R_9778482_SNP [dm3] 2R_13890977_SNP [dm6]	C	T	3.794e^-4	0.91	SYNONYMOUS_CODING shot INTRON shot
2L	3398290	2L_3398290_SNP [dm3] 2L_3398290_SNP [dm6]	G	A	3.799e^-4	0.91	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
3L	22595102	3L_22595102_SNP [dm3] 3L_22602002_SNP [dm6]	C	A	3.806e^-4	0.91	INTRON CG14459
3L	8394082	3L_8394082_SNP [dm3] 3L_8400982_SNP [dm6]	G	A	3.813e^-4	0.91	SYNONYMOUS_CODING CG7120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9432464	2R_9432464_SNP [dm3] 2R_13544959_SNP [dm6]	G	A	3.820e^-4	0.91	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	10030846	2R_10030846_INS [dm3] 2R_14143341_INS [dm6]	A	ATTTTACAAGGTGACATCTT...	3.820e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	10037713	2R_10037713_SNP [dm3] 2R_14150208_SNP [dm6]	T	C	3.827e^-4	0.91	INTRON Rcd1	TF binding site mE1_TFBS_HSA
2L	17390041	2L_17390041_SNP [dm3] 2L_17390041_SNP [dm6]	C	G	3.835e^-4	0.91	INTRON CLIP-190
3L	3129933	3L_3129933_SNP [dm3] 3L_3129933_SNP [dm6]	C	T	3.847e^-4	0.91	SYNONYMOUS_CODING CG11537
4	1122347	4_1122347_SNP [dm3] 4_1101721_SNP [dm6]	A	T	3.849e^-4	0.91	INTRON sv
2L	3375145	2L_3375145_SNP [dm3] 2L_3375145_SNP [dm6]	A	G	3.852e^-4	0.91	SYNONYMOUS_CODING CG15412 DOWNSTREAM CG9662	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	5149777	3R_5149777_SNP [dm3] 3R_9324055_SNP [dm6]	G	A	3.852e^-4	0.91	INTRON CG8861
2L	10052397	2L_10052397_SNP [dm3] 2L_10052397_SNP [dm6]	A	T	3.880e^-4	0.91	DOWNSTREAM CR44874 INTERGENIC
2L	11955628	2L_11955628_SNP [dm3] 2L_11955628_SNP [dm6]	T	A	3.885e^-4	0.91	DOWNSTREAM CR43314 EXON CR43314	TF binding site mE1_TFBS_cnc
4	1023265	4_1023265_SNP [dm3] 4_1002639_SNP [dm6]	T	C	3.888e^-4	0.91	INTRON toy
2L	14307189	2L_14307189_SNP [dm3] 2L_14307189_SNP [dm6]	A	G	3.890e^-4	0.91	INTRON wb
3R	12706069	3R_12706069_SNP [dm3] 3R_16880347_SNP [dm6]	T	A	3.897e^-4	0.91	INTRON iab-8
2L	12762886	2L_12762886_SNP [dm3] 2L_12762886_SNP [dm6]	T	C	3.901e^-4	0.91	INTERGENIC
2R	8692497	2R_8692497_SNP [dm3] 2R_12804992_SNP [dm6]	G	C	3.902e^-4	0.91	INTERGENIC
3R	14043944	3R_14043944_SNP [dm3] 3R_18218222_SNP [dm6]	T	A	3.903e^-4	0.91	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2R	9749565	2R_9749565_SNP [dm3] 2R_13862060_SNP [dm6]	C	A	3.910e^-4	0.91	UTR_5_PRIME CG13344 UPSTREAM CG16935	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	7708980	3R_7708980_SNP [dm3] 3R_11883258_SNP [dm6]	C	T	3.910e^-4	0.91	SYNONYMOUS_CODING CG31368 UPSTREAM CG6962 DOWNSTREAM mthl5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9942607	3R_9942607_SNP [dm3] 3R_14116885_SNP [dm6]	A	G	3.915e^-4	0.91	INTRON Kif19A
2L	2181257	2L_2181257_SNP [dm3] 2L_2181257_SNP [dm6]	C	G	3.921e^-4	0.91	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4837720	2R_4837720_SNP [dm3] 2R_8950215_SNP [dm6]	G	T	3.922e^-4	0.91	NON_SYNONYMOUS_CODING CG8229 INTRON CG33199	TF binding site mE1_TFBS_sens
3L	1002834	3L_1002834_SNP [dm3] 3L_1002834_SNP [dm6]	C	T	3.925e^-4	0.91	INTRON trio
3L	4937789	3L_4937789_SNP [dm3] 3L_4937789_SNP [dm6]	C	T	3.925e^-4	0.91	UTR_3_PRIME Con DOWNSTREAM Con
X	15467790	X_15467790_SNP [dm3] X_15573757_SNP [dm6]	G	A	3.926e^-4	0.91	NON_SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19548153	2R_19548153_SNP [dm3] 2R_23660630_SNP [dm6]	T	C	3.931e^-4	0.91	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	19548155	2R_19548155_SNP [dm3] 2R_23660632_SNP [dm6]	C	G	3.931e^-4	0.91	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	12704023	3R_12704023_SNP [dm3] 3R_16878301_SNP [dm6]	G	T	3.932e^-4	0.91	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8084645	2R_8084645_SNP [dm3] 2R_12197140_SNP [dm6]	G	A	3.937e^-4	0.91	SYNONYMOUS_CODING CG8858	TF binding site mE1_TFBS_cad
2L	11957940	2L_11957940_SNP [dm3] 2L_11957940_SNP [dm6]	C	T	3.941e^-4	0.91	EXON CR43314
3L	6067932	3L_6067932_SNP [dm3] 3L_6074832_SNP [dm6]	G	T	3.943e^-4	0.91	SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3011039	2R_3011039_SNP [dm3] 2R_7123534_SNP [dm6]	G	A	3.955e^-4	0.91	INTRON esn	TF binding site mE1_TFBS_cad
3R	4863839	3R_4863839_SNP [dm3] 3R_9038117_SNP [dm6]	A	T	3.956e^-4	0.91	UPSTREAM hyx INTRON neur	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7605831	2R_7605831_SNP [dm3] 2R_11718326_SNP [dm6]	T	C	3.962e^-4	0.91	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2975097	X_2975097_SNP [dm3] X_3081064_SNP [dm6]	T	G	3.966e^-4	0.91	INTRON kirre	TF binding site BDTNP1_TFBS_dl
3R	23546974	3R_23546974_SNP [dm3] 3R_27721252_SNP [dm6]	G	A	3.979e^-4	0.91	INTERGENIC
2L	952243	2L_952243_SNP [dm3] 2L_952243_SNP [dm6]	C	T	3.983e^-4	0.91	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7868285	2L_7868285_SNP [dm3] 2L_7868285_SNP [dm6]	T	C	3.987e^-4	0.91	INTRON Proc
2L	18483014	2L_18483014_SNP [dm3] 2L_18483014_SNP [dm6]	C	T	3.990e^-4	0.91	INTRON CG10283
3L	7855165	3L_7855165_SNP [dm3] 3L_7862065_SNP [dm6]	T	A	3.991e^-4	0.91	INTRON Pdp1
3R	12704021	3R_12704021_SNP [dm3] 3R_16878299_SNP [dm6]	A	T	3.993e^-4	0.91	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11304827	3R_11304827_SNP [dm3] 3R_15479105_SNP [dm6]	C	G	3.993e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4937681	3L_4937681_SNP [dm3] 3L_4937681_SNP [dm6]	G	T	3.999e^-4	0.91	UTR_3_PRIME Con DOWNSTREAM Con
3R	9674370	3R_9674370_SNP [dm3] 3R_13848648_SNP [dm6]	C	T	4.000e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6467787	3R_6467787_SNP [dm3] 3R_10642065_SNP [dm6]	G	A	4.002e^-4	0.91	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11662737	2R_11662737_SNP [dm3] 2R_15775232_SNP [dm6]	C	T	4.013e^-4	0.91	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1295373	2L_1295373_SNP [dm3] 2L_1295373_SNP [dm6]	A	T	4.019e^-4	0.91	UTR_3_PRIME robo3 DOWNSTREAM robo3
3L	3416453	3L_3416453_SNP [dm3] 3L_3416453_SNP [dm6]	G	T	4.027e^-4	0.91	INTRON sty
3L	3416464	3L_3416464_DEL [dm3] 3L_3416464_DEL [dm6]	ATCA	A	4.027e^-4	0.91	INTRON sty
2R	17271624	2R_17271624_SNP [dm3] 2R_21384119_SNP [dm6]	T	C	4.033e^-4	0.91	NON_SYNONYMOUS_CODING CG10795 DOWNSTREAM EfSec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10021626	2R_10021626_SNP [dm3] 2R_14134121_SNP [dm6]	A	G	4.034e^-4	0.91	INTRON Prosap
2R	20059740	2R_20059740_SNP [dm3] 2R_24172217_SNP [dm6]	C	A	4.048e^-4	0.91	SYNONYMOUS_CODING CG3328	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22583307	3L_22583307_SNP [dm3] 3L_22590207_SNP [dm6]	A	G	4.058e^-4	0.91	INTRON CG14459
2R	10030798	2R_10030798_SNP [dm3] 2R_14143293_SNP [dm6]	T	C	4.070e^-4	0.91	INTERGENIC
2L	7088883	2L_7088883_SNP [dm3] 2L_7088883_SNP [dm6]	C	T	4.085e^-4	0.91	INTERGENIC
3L	6309523	3L_6309523_SNP [dm3] 3L_6316423_SNP [dm6]	G	A	4.089e^-4	0.91	INTERGENIC	regulatory region REDfly_CRMs
2L	1664666	2L_1664666_SNP [dm3] 2L_1664666_SNP [dm6]	G	C	4.090e^-4	0.91	INTRON chinmo
3R	14054524	3R_14054524_SNP [dm3] 3R_18228802_SNP [dm6]	A	G	4.095e^-4	0.91	DOWNSTREAM Mdh2 INTERGENIC
2L	19757788	2L_19757788_SNP [dm3] 2L_19757788_SNP [dm6]	G	A	4.099e^-4	0.91	SYNONYMOUS_CODING CG10628 UPSTREAM CG10631	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17001273	2R_17001273_SNP [dm3] 2R_21113768_SNP [dm6]	C	A	4.112e^-4	0.91	INTRON ktub
2R	12961176	2R_12961176_SNP [dm3] 2R_17073671_SNP [dm6]	G	T	4.112e^-4	0.91	UPSTREAM CG30460 INTRON CG30460
2R	7053451	2R_7053451_SNP [dm3] 2R_11165946_SNP [dm6]	A	G	4.116e^-4	0.91	INTRON shn & 1 other
X	5865881	X_5865881_SNP [dm3] X_5971848_SNP [dm6]	A	G	4.121e^-4	0.91	INTRON Grip
2L	18559973	2L_18559973_SNP [dm3] 2L_18559973_SNP [dm6]	G	A	4.128e^-4	0.91	INTRON Pde11
3R	1141045	3R_1141045_SNP [dm3] 3R_5315323_SNP [dm6]	T	A	4.130e^-4	0.91	INTRON mtd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17712760	3R_17712760_SNP [dm3] 3R_21887038_SNP [dm6]	A	T	4.130e^-4	0.91	UTR_5_PRIME CG6678 INTRON dnd
2L	14111298	2L_14111298_SNP [dm3] 2L_14111298_SNP [dm6]	C	T	4.142e^-4	0.91	UPSTREAM CG31769 INTERGENIC
3L	14068594	3L_14068594_SNP [dm3] 3L_14075494_SNP [dm6]	G	A	4.156e^-4	0.91	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
3L	10893201	3L_10893201_SNP [dm3] 3L_10900101_SNP [dm6]	T	C	4.162e^-4	0.91	UPSTREAM Aps INTERGENIC	TF binding site mE1_TFBS_sens
3R	6478530	3R_6478530_SNP [dm3] 3R_10652808_SNP [dm6]	A	T	4.173e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
X	3849677	X_3849677_SNP [dm3] X_3955644_SNP [dm6]	G	A	4.174e^-4	0.91	UTR_3_PRIME lva DOWNSTREAM Vap-33A	TF binding site mE1_TFBS_cad
4	868705	4_868705_SNP [dm3] 4_848079_SNP [dm6]	A	T	4.174e^-4	0.91	INTERGENIC	transposable element FlyBase
3R	9959171	3R_9959171_INS [dm3] 3R_14133449_INS [dm6]	A	AA	4.184e^-4	0.91	INTERGENIC
X	8897460	X_8897460_SNP [dm3] X_9003427_SNP [dm6]	C	T	4.190e^-4	0.91	INTRON rdgA & 1 other
3L	19443165	3L_19443165_DEL [dm3] 3L_19450065_DEL [dm6]	TCA	T	4.198e^-4	0.91	UTR_3_PRIME Chd3
2L	422345	2L_422345_SNP [dm3] 2L_422345_SNP [dm6]	A	G	4.205e^-4	0.91	SYNONYMOUS_CODING CG13692 UPSTREAM CG11885 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19482909	2L_19482909_SNP [dm3] 2L_19482909_SNP [dm6]	C	T	4.212e^-4	0.91	UTR_3_PRIME CG10195
3L	2400141	3L_2400141_INS [dm3] 3L_2400141_INS [dm6]	C	CC	4.222e^-4	0.91	UPSTREAM CG45186 INTRON CG45186
2R	10217953	2R_10217953_SNP [dm3] 2R_14330448_SNP [dm6]	A	T	4.227e^-4	0.91	INTRON Shroom
2L	19502543	2L_19502543_SNP [dm3] 2L_19502543_SNP [dm6]	G	A	4.229e^-4	0.91	UTR_3_PRIME CG10188 DOWNSTREAM Top3alpha
2R	10735784	2R_10735784_SNP [dm3] 2R_14848279_SNP [dm6]	C	T	4.230e^-4	0.91	UTR_5_PRIME CG10209 DOWNSTREAM SMC2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	14589175	X_14589175_SNP [dm3] X_14695142_SNP [dm6]	T	G	4.241e^-4	0.91	INTRON NetB
X	10023382	X_10023382_SNP [dm3] X_10129349_SNP [dm6]	T	A	4.244e^-4	0.91	INTRON CR44894 & 1 other
3L	4948344	3L_4948344_SNP [dm3] 3L_4948344_SNP [dm6]	T	C	4.245e^-4	0.91	INTRON Con
2L	17605564	2L_17605564_SNP [dm3] 2L_17605564_SNP [dm6]	C	T	4.250e^-4	0.91	DOWNSTREAM CR44412 INTERGENIC
2R	8965938	2R_8965938_SNP [dm3] 2R_13078433_SNP [dm6]	A	C	4.256e^-4	0.91	INTRON Drl-2
X	17901078	X_17901078_SNP [dm3] X_18007045_SNP [dm6]	T	C	4.261e^-4	0.91	NON_SYNONYMOUS_CODING CG12672 INTRON Sh
3L	13705240	3L_13705240_SNP [dm3] 3L_13712140_SNP [dm6]	A	C	4.265e^-4	0.91	INTRON bru-3
2R	14160952	2R_14160952_SNP [dm3] 2R_18273447_SNP [dm6]	T	A	4.266e^-4	0.91	INTERGENIC
2L	12447770	2L_12447770_SNP [dm3] 2L_12447770_SNP [dm6]	A	G	4.290e^-4	0.91	SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Eb
3R	10369276	3R_10369276_SNP [dm3] 3R_14543554_SNP [dm6]	G	A	4.295e^-4	0.91	INTRON Pde6
2L	1731092	2L_1731092_SNP [dm3] 2L_1731092_SNP [dm6]	C	T	4.303e^-4	0.91	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other	TF binding site mE1_TFBS_cad
2L	18912810	2L_18912810_SNP [dm3] 2L_18912810_SNP [dm6]	A	C	4.303e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12031969	3L_12031969_SNP [dm3] 3L_12038869_SNP [dm6]	A	G	4.309e^-4	0.91	INTRON rols	TF binding site mE1_TFBS_inv
3L	4884783	3L_4884783_SNP [dm3] 3L_4884783_SNP [dm6]	C	T	4.310e^-4	0.91	SYNONYMOUS_CODING CG17150
3R	19365790	3R_19365790_SNP [dm3] 3R_23540068_SNP [dm6]	T	A	4.313e^-4	0.91	INTERGENIC
2L	5225413	2L_5225413_SNP [dm3] 2L_5225413_SNP [dm6]	G	T	4.319e^-4	0.91	INTRON tkv
3R	27489165	3R_27489165_SNP [dm3] 3R_31663443_SNP [dm6]	C	G	4.337e^-4	0.91	UTR_3_PRIME kek6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12352035	X_12352035_DEL [dm3] X_12458002_DEL [dm6]	CAGCCGCC	C	4.341e^-4	0.91	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18903402	2R_18903402_SNP [dm3] 2R_23015879_SNP [dm6]	G	C	4.360e^-4	0.91	INTRON twi & 1 other
2R	16607968	2R_16607968_SNP [dm3] 2R_20720463_SNP [dm6]	A	G	4.364e^-4	0.91	INTRON dpr
3L	4054697	3L_4054697_SNP [dm3] 3L_4054697_SNP [dm6]	G	C	4.367e^-4	0.91	INTRON CG1136
3L	14544617	3L_14544617_SNP [dm3] 3L_14551517_SNP [dm6]	A	G	4.368e^-4	0.91	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	2609159	X_2609159_SNP [dm3] X_2715126_SNP [dm6]	A	T	4.370e^-4	0.91	SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_ttk
X	19081800	X_19081800_SNP [dm3] X_19187767_SNP [dm6]	A	G	4.373e^-4	0.91	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6478536	3R_6478536_SNP [dm3] 3R_10652814_SNP [dm6]	T	C	4.374e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc
3R	13584518	3R_13584518_SNP [dm3] 3R_17758796_SNP [dm6]	A	G	4.379e^-4	0.91	UTR_5_PRIME TyrR INTRON TyrR
3L	11953326	3L_11953326_SNP [dm3] 3L_11960226_SNP [dm6]	A	T	4.386e^-4	0.91	INTRON prc
X	10186300	X_10186300_SNP [dm3] X_10292267_SNP [dm6]	G	T	4.399e^-4	0.91	INTRON alpha-Man-I	TF binding site mE1_TFBS_inv
2R	10029195	2R_10029195_SNP [dm3] 2R_14141690_SNP [dm6]	A	G	4.401e^-4	0.91	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22115235	2L_22115235_SNP [dm3] 2L_22115235_SNP [dm6]	A	G	4.401e^-4	0.91	INTERGENIC	transposable element FlyBase
3R	18480033	3R_18480033_SNP [dm3] 3R_22654311_SNP [dm6]	G	A	4.412e^-4	0.91	INTRON CG45058
3R	17001407	3R_17001407_SNP [dm3] 3R_21175685_SNP [dm6]	T	C	4.422e^-4	0.91	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad
2L	17605568	2L_17605568_INS [dm3] 2L_17605568_INS [dm6]	T	TTTTTTGT	4.431e^-4	0.91	DOWNSTREAM CR44412 INTERGENIC
3L	1033736	3L_1033736_SNP [dm3] 3L_1033736_SNP [dm6]	G	A	4.431e^-4	0.91	SYNONYMOUS_CODING trio UPSTREAM CG9205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	18412367	X_18412367_SNP [dm3] X_18518334_SNP [dm6]	T	C	4.432e^-4	0.91	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
X	18412383	X_18412383_SNP [dm3] X_18518350_SNP [dm6]	A	G	4.442e^-4	0.91	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
2L	11953513	2L_11953513_SNP [dm3] 2L_11953513_SNP [dm6]	A	G	4.457e^-4	0.91	UPSTREAM bft EXON CR43314
3R	12396134	3R_12396134_SNP [dm3] 3R_16570412_SNP [dm6]	A	G	4.462e^-4	0.91	UTR_3_PRIME CG42342 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19202987	2L_19202987_DEL [dm3] 2L_19202987_DEL [dm6]	GG	G	4.473e^-4	0.91	INTRON drl	regulatory region REDfly_CRMs
3R	14759727	3R_14759727_SNP [dm3] 3R_18934005_SNP [dm6]	G	A	4.474e^-4	0.91	INTRON CG42613
3R	13465433	3R_13465433_SNP [dm3] 3R_17639711_SNP [dm6]	A	G	4.486e^-4	0.91	DOWNSTREAM CR45222 INTRON CG43175
2L	22687132	2L_22687132_SNP [dm3] 2L_22794400_SNP [dm6]	T	A	4.497e^-4	0.91	INTERGENIC
2L	13781164	2L_13781164_SNP [dm3] 2L_13781164_SNP [dm6]	T	G	4.506e^-4	0.91	SYNONYMOUS_CODING p38b UPSTREAM CG9008	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10862926	2R_10862926_SNP [dm3] 2R_14975421_SNP [dm6]	C	T	4.515e^-4	0.91	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11309190	3L_11309190_SNP [dm3] 3L_11316090_SNP [dm6]	A	T	4.516e^-4	0.91	EXON CR44361	TF binding site BDTNP1_TFBS_twi
2L	5181401	2L_5181401_SNP [dm3] 2L_5181401_SNP [dm6]	G	A	4.516e^-4	0.91	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	17797699	2R_17797699_SNP [dm3] 2R_21910194_SNP [dm6]	A	G	4.522e^-4	0.91	INTRON Fili
2R	9926612	2R_9926612_SNP [dm3] 2R_14039107_SNP [dm6]	G	A	4.530e^-4	0.91	NON_SYNONYMOUS_CODING mam	TF binding site mE1_TFBS_chinmo
3L	5813948	3L_5813948_SNP [dm3] 3L_5820848_SNP [dm6]	A	G	4.553e^-4	0.91	INTRON vn
3R	3902790	3R_3902790_SNP [dm3] 3R_8077068_SNP [dm6]	A	C	4.559e^-4	0.91	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14539921	3L_14539921_SNP [dm3] 3L_14546821_SNP [dm6]	C	T	4.562e^-4	0.91	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
3R	12703996	3R_12703996_SNP [dm3] 3R_16878274_SNP [dm6]	A	T	4.562e^-4	0.91	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14811149	3R_14811149_SNP [dm3] 3R_18985427_SNP [dm6]	C	T	4.566e^-4	0.91	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17490298	X_17490298_SNP [dm3] X_17596265_SNP [dm6]	T	A	4.566e^-4	0.91	INTRON CG12991
3L	11131791	3L_11131791_SNP [dm3] 3L_11138691_SNP [dm6]	T	A	4.567e^-4	0.91	INTRON CG32082
3L	4364931	3L_4364931_SNP [dm3] 3L_4364931_SNP [dm6]	G	A	4.568e^-4	0.91	SYNONYMOUS_CODING mRpS6 UPSTREAM Cip4 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10361678	3R_10361678_SNP [dm3] 3R_14535956_SNP [dm6]	G	A	4.583e^-4	0.91	INTRON Pde6
2R	12771383	2R_12771383_SNP [dm3] 2R_16883878_SNP [dm6]	A	C	4.583e^-4	0.91	SPLICE_SITE_REGION CG6472 INTRON CG8910 & 1 other
2L	15964551	2L_15964551_SNP [dm3] 2L_15964551_SNP [dm6]	C	T	4.599e^-4	0.91	INTERGENIC
3L	4951792	3L_4951792_SNP [dm3] 3L_4951792_SNP [dm6]	A	G	4.600e^-4	0.91	INTRON Con
3R	23388844	3R_23388844_DEL [dm3] 3R_27563122_DEL [dm6]	TT	T	4.608e^-4	0.91	UTR_3_PRIME wdb
3L	6224210	3L_6224210_SNP [dm3] 3L_6231110_SNP [dm6]	G	A	4.611e^-4	0.91	DOWNSTREAM CG13299 INTERGENIC
3R	10533748	3R_10533748_SNP [dm3] 3R_14708026_SNP [dm6]	C	T	4.618e^-4	0.91	INTRON kibra
2R	11970888	2R_11970888_SNP [dm3] 2R_16083383_SNP [dm6]	G	A	4.624e^-4	0.91	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
2L	3264335	2L_3264335_DEL [dm3] 2L_3264335_DEL [dm6]	TT	T	4.630e^-4	0.91	EXON CR45706	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8407296	3R_8407296_DEL [dm3] 3R_12581574_DEL [dm6]	TC	T	4.631e^-4	0.91	INTRON Octbeta2R
2L	12659853	2L_12659853_SNP [dm3] 2L_12659853_SNP [dm6]	T	C	4.654e^-4	0.91	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3L	15142765	3L_15142765_SNP [dm3] 3L_15149665_SNP [dm6]	T	C	4.657e^-4	0.91	UPSTREAM FucTA INTRON FucTA
2R	12542146	2R_12542146_SNP [dm3] 2R_16654641_SNP [dm6]	A	T	4.671e^-4	0.91	DOWNSTREAM Picot INTRON Nach
X	16946904	X_16946904_SNP [dm3] X_17052871_SNP [dm6]	G	T	4.672e^-4	0.91	INTRON CG45002
3L	7858768	3L_7858768_SNP [dm3] 3L_7865668_SNP [dm6]	A	C	4.679e^-4	0.91	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	9551150	2R_9551150_SNP [dm3] 2R_13663645_SNP [dm6]	G	T	4.688e^-4	0.91	UPSTREAM CG6209 INTRON fas
X	12910441	X_12910441_INS [dm3] X_13016408_INS [dm6]	T	TTCGAAGT	4.690e^-4	0.91	INTRON rad
3R	4549339	3R_4549339_SNP [dm3] 3R_8723617_SNP [dm6]	A	T	4.696e^-4	0.91	NON_SYNONYMOUS_CODING CG8145 DOWNSTREAM CG8136	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19517019	2L_19517019_DEL [dm3] 2L_19517019_DEL [dm6]	ATAATAA	A	4.698e^-4	0.91	UPSTREAM CG10186 DOWNSTREAM CR43363 INTRON CG10186
2L	3935642	2L_3935642_SNP [dm3] 2L_3935642_SNP [dm6]	G	T	4.699e^-4	0.91	INTRON fred
3R	8407397	3R_8407397_SNP [dm3] 3R_12581675_SNP [dm6]	A	T	4.703e^-4	0.91	INTRON Octbeta2R
2R	11064095	2R_11064095_SNP [dm3] 2R_15176590_SNP [dm6]	T	C	4.703e^-4	0.91	INTRON igl
X	5513150	X_5513150_SNP [dm3] X_5619117_SNP [dm6]	A	G	4.708e^-4	0.91	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
3R	12078301	3R_12078301_SNP [dm3] 3R_16252579_SNP [dm6]	C	G	4.717e^-4	0.91	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6445121	X_6445121_SNP [dm3] X_6551088_SNP [dm6]	A	C	4.718e^-4	0.91	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10735042	2R_10735042_SNP [dm3] 2R_14847537_SNP [dm6]	A	G	4.718e^-4	0.91	SYNONYMOUS_CODING CG10209	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	14399191	2R_14399191_SNP [dm3] 2R_18511686_SNP [dm6]	G	T	4.723e^-4	0.91	INTERGENIC
2L	449215	2L_449215_SNP [dm3] 2L_449215_SNP [dm6]	T	G	4.723e^-4	0.91	DOWNSTREAM ex INTRON crq	TF binding site mE1_TFBS_sens
3R	14043969	3R_14043969_SNP [dm3] 3R_18218247_SNP [dm6]	C	A	4.726e^-4	0.91	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2R	8605964	2R_8605964_SNP [dm3] 2R_12718459_SNP [dm6]	A	C	4.727e^-4	0.91	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14183219	2L_14183219_SNP [dm3] 2L_14183219_SNP [dm6]	G	A	4.742e^-4	0.91	INTERGENIC
2R	1527066	2R_1527066_SNP [dm3] 2R_5639561_SNP [dm6]	G	T	4.745e^-4	0.91	INTERGENIC
3R	21614119	3R_21614119_SNP [dm3] 3R_25788397_SNP [dm6]	T	A	4.746e^-4	0.91	INTRON CG31380
2L	728604	2L_728604_SNP [dm3] 2L_728604_SNP [dm6]	A	C	4.751e^-4	0.91	NON_SYNONYMOUS_CODING Hsp60B
3R	6279153	3R_6279153_SNP [dm3] 3R_10453431_SNP [dm6]	C	T	4.754e^-4	0.91	INTERGENIC
X	16881968	X_16881968_SNP [dm3] X_16987935_SNP [dm6]	T	A	4.767e^-4	0.91	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9778579	2R_9778579_SNP [dm3] 2R_13891074_SNP [dm6]	T	G	4.768e^-4	0.91	NON_SYNONYMOUS_CODING shot INTRON shot
3L	22582843	3L_22582843_SNP [dm3] 3L_22589743_SNP [dm6]	C	T	4.773e^-4	0.91	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13701765	2L_13701765_SNP [dm3] 2L_13701765_SNP [dm6]	A	C	4.776e^-4	0.91	INTRON CG31814
X	4957605	X_4957605_SNP [dm3] X_5063572_SNP [dm6]	C	T	4.782e^-4	0.91	UPSTREAM ovo INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
3L	15448490	3L_15448490_SNP [dm3] 3L_15455390_SNP [dm6]	T	A	4.782e^-4	0.91	INTERGENIC
2L	4700166	2L_4700166_SNP [dm3] 2L_4700166_SNP [dm6]	C	G	4.788e^-4	0.91	DOWNSTREAM Taf12L INTRON CG34351
2R	11735814	2R_11735814_SNP [dm3] 2R_15848309_SNP [dm6]	C	T	4.793e^-4	0.91	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2L	2571799	2L_2571799_SNP [dm3] 2L_2571799_SNP [dm6]	T	A	4.817e^-4	0.91	INTRON Cyp309a2	TF binding site mE1_TFBS_cad
3R	14455013	3R_14455013_SNP [dm3] 3R_18629291_SNP [dm6]	G	A	4.822e^-4	0.91	UTR_3_PRIME CG14301 UPSTREAM tRNA:CR31228 INTRON qin
2L	4700131	2L_4700131_SNP [dm3] 2L_4700131_SNP [dm6]	G	A	4.829e^-4	0.91	DOWNSTREAM Taf12L INTRON CG34351
3R	10428939	3R_10428939_SNP [dm3] 3R_14603217_SNP [dm6]	G	A	4.830e^-4	0.91	UPSTREAM stumps INTRON stumps
2R	14159839	2R_14159839_SNP [dm3] 2R_18272334_SNP [dm6]	G	T	4.848e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26256779	3R_26256779_SNP [dm3] 3R_30431057_SNP [dm6]	A	T	4.852e^-4	0.91	INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	19255101	3R_19255101_DEL [dm3] 3R_23429379_DEL [dm6]	TT	T	4.857e^-4	0.91	INTRON CG4374
2R	10022262	2R_10022262_SNP [dm3] 2R_14134757_SNP [dm6]	T	C	4.860e^-4	0.91	INTRON Prosap
2L	4263470	2L_4263470_SNP [dm3] 2L_4263470_SNP [dm6]	C	A	4.868e^-4	0.91	INTERGENIC
3R	9291491	3R_9291491_SNP [dm3] 3R_13465769_SNP [dm6]	A	G	4.881e^-4	0.91	EXON CR17025	TF binding site BDTNP1_TFBS_dl
3R	14672973	3R_14672973_SNP [dm3] 3R_18847251_SNP [dm6]	A	T	4.881e^-4	0.91	INTRON CG18208
X	9727189	X_9727189_SNP [dm3] X_9833156_SNP [dm6]	A	G	4.883e^-4	0.91	INTRON CG32698
2R	9128299	2R_9128299_SNP [dm3] 2R_13240794_SNP [dm6]	C	T	4.892e^-4	0.91	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12659855	2L_12659855_SNP [dm3] 2L_12659855_SNP [dm6]	A	C	4.893e^-4	0.91	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
2L	12762931	2L_12762931_SNP [dm3] 2L_12762931_SNP [dm6]	T	A	4.906e^-4	0.91	INTERGENIC
2L	15381859	2L_15381859_SNP [dm3] 2L_15381859_SNP [dm6]	C	G	4.909e^-4	0.91	INTERGENIC
2L	15769828	2L_15769828_SNP [dm3] 2L_15769828_SNP [dm6]	A	G	4.911e^-4	0.91	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	641442	X_641442_SNP [dm3] X_747409_SNP [dm6]	G	A	4.912e^-4	0.91	NON_SYNONYMOUS_CODING sdk
3R	8379057	3R_8379057_SNP [dm3] 3R_12553335_SNP [dm6]	C	A	4.919e^-4	0.91	INTRON Octbeta2R
2L	20778094	2L_20778094_SNP [dm3] 2L_20778094_SNP [dm6]	T	A	4.928e^-4	0.91	INTRON cad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14679963	X_14679963_SNP [dm3] X_14785930_SNP [dm6]	C	A	4.929e^-4	0.91	SYNONYMOUS_CODING Ag5r UPSTREAM CR45522
2L	11552710	2L_11552710_SNP [dm3] 2L_11552710_SNP [dm6]	G	T	4.933e^-4	0.91	INTERGENIC
X	19597353	X_19597353_SNP [dm3] X_19703320_SNP [dm6]	C	T	4.934e^-4	0.91	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
4	249973	4_249973_SNP [dm3] 4_229347_SNP [dm6]	A	G	4.936e^-4	0.91	NON_SYNONYMOUS_CODING yellow-h
2R	9551088	2R_9551088_SNP [dm3] 2R_13663583_SNP [dm6]	C	T	4.937e^-4	0.91	UTR_5_PRIME CG6209 INTRON fas
2L	422372	2L_422372_SNP [dm3] 2L_422372_SNP [dm6]	G	A	4.941e^-4	0.91	SYNONYMOUS_CODING CG13692 UPSTREAM CG11885 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10030914	2R_10030914_SNP [dm3] 2R_14143409_SNP [dm6]	T	C	4.943e^-4	0.91	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	14209886	3L_14209886_SNP [dm3] 3L_14216786_SNP [dm6]	A	T	4.959e^-4	0.91	INTRON nuf
3R	14054504	3R_14054504_SNP [dm3] 3R_18228782_SNP [dm6]	C	T	4.970e^-4	0.91	DOWNSTREAM Mdh2 INTERGENIC
3L	14539462	3L_14539462_SNP [dm3] 3L_14546362_SNP [dm6]	T	G	4.970e^-4	0.91	INTRON CG9238
2R	10026039	2R_10026039_SNP [dm3] 2R_14138534_SNP [dm6]	G	T	4.976e^-4	0.91	INTRON Prosap
2L	4266574	2L_4266574_SNP [dm3] 2L_4266574_SNP [dm6]	G	T	4.979e^-4	0.91	INTERGENIC
3R	12366997	3R_12366997_SNP [dm3] 3R_16541275_SNP [dm6]	A	G	4.983e^-4	0.91	INTRON CG42342
3R	7293389	3R_7293389_SNP [dm3] 3R_11467667_SNP [dm6]	A	T	4.989e^-4	0.91	DOWNSTREAM CG17230 INTERGENIC
2L	10121117	2L_10121117_SNP [dm3] 2L_10121117_SNP [dm6]	G	T	4.992e^-4	0.91	INTRON CG44153 & 1 other
2R	8119529	2R_8119529_SNP [dm3] 2R_12232024_SNP [dm6]	A	T	4.999e^-4	0.91	INTERGENIC
2R	10774254	2R_10774254_SNP [dm3] 2R_14886749_SNP [dm6]	T	G	5.015e^-4	0.91	SYNONYMOUS_CODING Cyp6a21 DOWNSTREAM Cyp6a8
2R	15960875	2R_15960875_SNP [dm3] 2R_20073370_SNP [dm6]	C	G	5.028e^-4	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10734820	2R_10734820_SNP [dm3] 2R_14847315_SNP [dm6]	T	C	5.029e^-4	0.91	SYNONYMOUS_CODING CG10209	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10685591	2R_10685591_SNP [dm3] 2R_14798086_SNP [dm6]	C	T	5.031e^-4	0.91	INTRON kn
X	10018274	X_10018274_SNP [dm3] X_10124241_SNP [dm6]	G	T	5.032e^-4	0.91	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3L	6660647	3L_6660647_SNP [dm3] 3L_6667547_SNP [dm6]	G	C	5.040e^-4	0.91	NON_SYNONYMOUS_CODING CG32395 UPSTREAM CR45173
2R	12624414	2R_12624414_SNP [dm3] 2R_16736909_SNP [dm6]	T	C	5.057e^-4	0.91	UTR_3_PRIME CG43104
3R	9670610	3R_9670610_SNP [dm3] 3R_13844888_SNP [dm6]	C	A	5.066e^-4	0.91	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.720e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.06991

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	4.951	0.0841

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1947 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	2.500e^-7	0.469	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	6.233e^-7	0.584	INTRON Con
X	8182283	X_8182283_SNP [dm3] X_8288250_SNP [dm6]	A	T	1.414e^-6	0.678	INTRON nAChRalpha3
2R	4799432	2R_4799432_SNP [dm3] 2R_8911927_SNP [dm6]	C	T	1.445e^-6	0.678	NON_SYNONYMOUS_CODING Pgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16178648	2R_16178648_SNP [dm3] 2R_20291143_SNP [dm6]	A	G	1.873e^-6	0.678	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3R	7532204	3R_7532204_SNP [dm3] 3R_11706482_SNP [dm6]	C	T	2.355e^-6	0.678	INTERGENIC
3R	7532214	3R_7532214_SNP [dm3] 3R_11706492_SNP [dm6]	G	C	2.580e^-6	0.678	INTERGENIC
3R	9943073	3R_9943073_SNP [dm3] 3R_14117351_SNP [dm6]	C	G	3.235e^-6	0.678	INTRON Kif19A
X	8182276	X_8182276_SNP [dm3] X_8288243_SNP [dm6]	C	G	3.255e^-6	0.678	INTRON nAChRalpha3
2R	11972378	2R_11972378_SNP [dm3] 2R_16084873_SNP [dm6]	A	C	3.976e^-6	0.746	NON_SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23388917	3R_23388917_SNP [dm3] 3R_27563195_SNP [dm6]	C	T	5.265e^-6	0.768	UTR_3_PRIME wdb
3L	13632457	3L_13632457_SNP [dm3] 3L_13639357_SNP [dm6]	T	C	5.269e^-6	0.768	INTRON bru-3
X	8184377	X_8184377_SNP [dm3] X_8290344_SNP [dm6]	C	T	5.411e^-6	0.768	INTRON nAChRalpha3
2L	12056141	2L_12056141_SNP [dm3] 2L_12056141_SNP [dm6]	A	C	5.732e^-6	0.768	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	15419512	X_15419512_SNP [dm3] X_15525479_SNP [dm6]	A	G	6.274e^-6	0.784	INTRON Ac13E
X	11288286	X_11288286_SNP [dm3] X_11394253_SNP [dm6]	C	G	7.239e^-6	0.819	SPLICE_SITE_REGION dlg1 INTRON dlg1
3L	17307470	3L_17307470_SNP [dm3] 3L_17314370_SNP [dm6]	G	C	7.659e^-6	0.819	UPSTREAM mir-219 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8182278	X_8182278_SNP [dm3] X_8288245_SNP [dm6]	C	T	8.025e^-6	0.819	INTRON nAChRalpha3
2R	4801850	2R_4801850_SNP [dm3] 2R_8914345_SNP [dm6]	T	C	9.285e^-6	0.819	UPSTREAM lin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	4943538	3L_4943538_SNP [dm3] 3L_4943538_SNP [dm6]	G	A	1.025e^-5	0.819	INTRON Con
3R	26668172	3R_26668172_SNP [dm3] 3R_30842450_SNP [dm6]	C	T	1.072e^-5	0.819	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9809831	2R_9809831_SNP [dm3] 2R_13922326_SNP [dm6]	G	A	1.123e^-5	0.819	INTRON shot
3L	12343488	3L_12343488_SNP [dm3] 3L_12350388_SNP [dm6]	T	C	1.124e^-5	0.819	INTRON CrzR
3L	1361975	3L_1361975_SNP [dm3] 3L_1361975_SNP [dm6]	G	A	1.152e^-5	0.819	INTRON Ptp61F
3L	1944499	3L_1944499_SNP [dm3] 3L_1944499_SNP [dm6]	G	T	1.197e^-5	0.819	NON_SYNONYMOUS_CODING mu2
X	5613330	X_5613330_SNP [dm3] X_5719297_SNP [dm6]	T	A	1.218e^-5	0.819	DOWNSTREAM CG32758 INTERGENIC
2R	4682739	2R_4682739_SNP [dm3] 2R_8795234_SNP [dm6]	G	A	1.278e^-5	0.819	INTERGENIC
3R	17708407	3R_17708407_SNP [dm3] 3R_21882685_SNP [dm6]	T	G	1.304e^-5	0.819	NON_SYNONYMOUS_CODING CG31465 EXON CR45046
2L	12056138	2L_12056138_SNP [dm3] 2L_12056138_SNP [dm6]	G	A	1.309e^-5	0.819	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	18692062	3R_18692062_MNP [dm3] 3R_22866340_MNP [dm6]	AGA	GAG	1.310e^-5	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14258019	3R_14258019_SNP [dm3] 3R_18432297_SNP [dm6]	A	T	1.421e^-5	0.826	INTRON fru
2R	10030838	2R_10030838_SNP [dm3] 2R_14143333_SNP [dm6]	G	A	1.452e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	703729	2R_703729_SNP [dm3] 2R_4816224_SNP [dm6]	C	G	1.453e^-5	0.826	UTR_3_PRIME CG17528	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1397614	3L_1397614_SNP [dm3] 3L_1397614_SNP [dm6]	A	G	1.500e^-5	0.827	UPSTREAM tRNA:E4:62Aa & 4 others INTRON Ptp61F
X	12593371	X_12593371_SNP [dm3] X_12699338_SNP [dm6]	G	A	1.639e^-5	0.831	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12850389	3L_12850389_SNP [dm3] 3L_12857289_SNP [dm6]	G	T	1.640e^-5	0.831	UTR_3_PRIME Ent3 & 1 other DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
3L	15910644	3L_15910644_SNP [dm3] 3L_15917544_SNP [dm6]	A	G	1.682e^-5	0.831	INTRON sff
2R	8702557	2R_8702557_SNP [dm3] 2R_12815052_SNP [dm6]	G	A	1.685e^-5	0.831	INTERGENIC
X	8182150	X_8182150_SNP [dm3] X_8288117_SNP [dm6]	G	T	1.762e^-5	0.831	INTRON nAChRalpha3
3R	25850804	3R_25850804_SNP [dm3] 3R_30025082_SNP [dm6]	C	T	1.786e^-5	0.831	INTRON Axn
3L	3837741	3L_3837741_SNP [dm3] 3L_3837741_SNP [dm6]	A	C	1.844e^-5	0.831	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4374652	X_4374652_SNP [dm3] X_4480619_SNP [dm6]	T	G	1.983e^-5	0.831	INTRON CR32773 & 1 other
2R	19045180	2R_19045180_SNP [dm3] 2R_23157657_SNP [dm6]	A	G	2.010e^-5	0.831	UTR_3_PRIME CG13545 INTRON CG9899
X	8182260	X_8182260_SNP [dm3] X_8288227_SNP [dm6]	G	T	2.033e^-5	0.831	INTRON nAChRalpha3
2R	11972352	2R_11972352_SNP [dm3] 2R_16084847_SNP [dm6]	A	T	2.039e^-5	0.831	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18692184	3R_18692184_SNP [dm3] 3R_22866462_SNP [dm6]	T	A	2.129e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14644477	3L_14644477_SNP [dm3] 3L_14651377_SNP [dm6]	C	T	2.158e^-5	0.831	INTRON dlp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	6540696	2R_6540696_SNP [dm3] 2R_10653191_SNP [dm6]	A	C	2.170e^-5	0.831	INTERGENIC
3L	1944502	3L_1944502_SNP [dm3] 3L_1944502_SNP [dm6]	C	T	2.172e^-5	0.831	SYNONYMOUS_CODING mu2
X	4242574	X_4242574_SNP [dm3] X_4348541_SNP [dm6]	G	C	2.216e^-5	0.831	INTRON norpA
2L	4983906	2L_4983906_SNP [dm3] 2L_4983906_SNP [dm6]	A	C	2.344e^-5	0.862	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_chinmo
X	8184385	X_8184385_SNP [dm3] X_8290352_SNP [dm6]	G	T	2.452e^-5	0.878	INTRON nAChRalpha3
2L	2711970	2L_2711970_SNP [dm3] 2L_2711970_SNP [dm6]	G	A	2.544e^-5	0.878	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6563351	3L_6563351_SNP [dm3] 3L_6570251_SNP [dm6]	T	C	2.556e^-5	0.878	INTRON CG18769 & 1 other
3R	4251383	3R_4251383_SNP [dm3] 3R_8425661_SNP [dm6]	A	G	2.628e^-5	0.878	INTRON CG45263
3L	1951632	3L_1951632_SNP [dm3] 3L_1951632_SNP [dm6]	T	C	2.685e^-5	0.878	NON_SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15807256	2L_15807256_SNP [dm3] 2L_15807256_SNP [dm6]	C	A	2.701e^-5	0.878	EXON CR44602
3L	1399790	3L_1399790_SNP [dm3] 3L_1399790_SNP [dm6]	G	A	2.797e^-5	0.878	SYNONYMOUS_CODING CG32320 INTRON Ptp61F
X	13503117	X_13503117_SNP [dm3] X_13609084_SNP [dm6]	C	T	2.821e^-5	0.878	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
3L	4941841	3L_4941841_SNP [dm3] 3L_4941841_SNP [dm6]	T	C	2.843e^-5	0.878	INTRON Con
3R	18692018	3R_18692018_SNP [dm3] 3R_22866296_SNP [dm6]	A	C	2.855e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19118629	X_19118629_SNP [dm3] X_19224596_SNP [dm6]	G	T	2.911e^-5	0.88	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10030846	2R_10030846_INS [dm3] 2R_14143341_INS [dm6]	A	ATTTTACAAGGTGACATCTT...	3.036e^-5	0.893	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	1952407	3L_1952407_SNP [dm3] 3L_1952407_SNP [dm6]	T	C	3.081e^-5	0.893	SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12056075	2L_12056075_SNP [dm3] 2L_12056075_SNP [dm6]	G	A	3.144e^-5	0.893	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	12056027	2L_12056027_SNP [dm3] 2L_12056027_SNP [dm6]	A	C	3.164e^-5	0.893	UTR_5_PRIME JhI-21 UPSTREAM RpL7-like & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1745046	3L_1745046_SNP [dm3] 3L_1745046_SNP [dm6]	A	C	3.225e^-5	0.893	UTR_3_PRIME Gk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15997437	2L_15997437_SNP [dm3] 2L_15997437_SNP [dm6]	A	G	3.237e^-5	0.893	INTERGENIC
2L	15488041	2L_15488041_SNP [dm3] 2L_15488041_SNP [dm6]	C	T	3.289e^-5	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2603342	2L_2603342_SNP [dm3] 2L_2603342_SNP [dm6]	C	T	3.454e^-5	0.923	INTERGENIC
2R	15572890	2R_15572890_SNP [dm3] 2R_19685385_SNP [dm6]	C	T	3.496e^-5	0.923	DOWNSTREAM CG15128 INTERGENIC
X	2525018	X_2525018_SNP [dm3] X_2630985_SNP [dm6]	C	T	3.571e^-5	0.926	SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12850391	3L_12850391_SNP [dm3] 3L_12857291_SNP [dm6]	A	T	3.624e^-5	0.926	UTR_3_PRIME Ent3 & 1 other DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
3L	16256939	3L_16256939_SNP [dm3] 3L_16263839_SNP [dm6]	G	T	3.782e^-5	0.926	NON_SYNONYMOUS_CODING CG13070 DOWNSTREAM CG13071 & 1 other
2R	19045049	2R_19045049_SNP [dm3] 2R_23157526_SNP [dm6]	A	G	3.790e^-5	0.926	DOWNSTREAM CG13545 INTRON CG9899
3L	10745229	3L_10745229_SNP [dm3] 3L_10752129_SNP [dm6]	G	A	3.825e^-5	0.926	INTERGENIC
3R	8975322	3R_8975322_SNP [dm3] 3R_13149600_SNP [dm6]	A	C	3.977e^-5	0.926	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	13632458	3L_13632458_SNP [dm3] 3L_13639358_SNP [dm6]	G	A	3.984e^-5	0.926	INTRON bru-3
X	19118631	X_19118631_INS [dm3] X_19224598_INS [dm6]	G	GT	4.014e^-5	0.926	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8379920	3R_8379920_SNP [dm3] 3R_12554198_SNP [dm6]	T	C	4.035e^-5	0.926	INTRON Octbeta2R
2R	21020619	2R_21020619_SNP [dm3] 2R_25133096_SNP [dm6]	C	T	4.152e^-5	0.926	INTRON lov	transposable element FlyBase
X	13503116	X_13503116_SNP [dm3] X_13609083_SNP [dm6]	A	T	4.204e^-5	0.926	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
3R	7592851	3R_7592851_INS [dm3] 3R_11767129_INS [dm6]	G	GGAA	4.377e^-5	0.926	UTR_3_PRIME l_3_neo38
2R	9810120	2R_9810120_SNP [dm3] 2R_13922615_SNP [dm6]	C	T	4.384e^-5	0.926	INTRON shot
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	4.422e^-5	0.926	INTERGENIC
X	12880717	X_12880717_SNP [dm3] X_12986684_SNP [dm6]	G	T	4.437e^-5	0.926	INTERGENIC
3L	10745165	3L_10745165_SNP [dm3] 3L_10752065_SNP [dm6]	T	A	4.486e^-5	0.926	INTERGENIC
2R	10510771	2R_10510771_SNP [dm3] 2R_14623266_SNP [dm6]	C	T	4.545e^-5	0.926	UPSTREAM snoRNA:Me28S-A992 & 4 others DOWNSTREAM snoRNA:Me28S-C3227b & 3 others INTRON Uhg5	TF binding site mE1_TFBS_zfh1
3R	8975342	3R_8975342_SNP [dm3] 3R_13149620_SNP [dm6]	G	A	4.575e^-5	0.926	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	10086590	2L_10086590_SNP [dm3] 2L_10086590_SNP [dm6]	A	C	4.588e^-5	0.926	INTRON CG44153
3L	9856765	3L_9856765_SNP [dm3] 3L_9863665_SNP [dm6]	C	G	4.764e^-5	0.926	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14644200	3L_14644200_SNP [dm3] 3L_14651100_SNP [dm6]	C	T	4.809e^-5	0.926	INTRON dlp	TF binding site mE1_TFBS_cnc
2R	10002034	2R_10002034_SNP [dm3] 2R_14114529_SNP [dm6]	C	A	4.906e^-5	0.926	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1033895	3L_1033895_SNP [dm3] 3L_1033895_SNP [dm6]	C	T	4.948e^-5	0.926	UTR_5_PRIME trio UPSTREAM CG9205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	23388844	3R_23388844_DEL [dm3] 3R_27563122_DEL [dm6]	TT	T	5.042e^-5	0.926	UTR_3_PRIME wdb
2L	7636772	2L_7636772_SNP [dm3] 2L_7636772_SNP [dm6]	T	C	5.092e^-5	0.926	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9691301	3R_9691301_SNP [dm3] 3R_13865579_SNP [dm6]	C	T	5.099e^-5	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	10029833	2R_10029833_SNP [dm3] 2R_14142328_SNP [dm6]	C	G	5.173e^-5	0.926	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
X	12593377	X_12593377_SNP [dm3] X_12699344_SNP [dm6]	G	T	5.255e^-5	0.926	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8182250	X_8182250_SNP [dm3] X_8288217_SNP [dm6]	C	A	5.274e^-5	0.926	INTRON nAChRalpha3
3L	10992284	3L_10992284_INS [dm3] 3L_10999184_INS [dm6]	A	AA	5.426e^-5	0.926	INTRON klu	TF binding site mE1_TFBS_cad
3R	18090615	3R_18090615_SNP [dm3] 3R_22264893_SNP [dm6]	A	G	5.525e^-5	0.926	INTRON SKIP
3L	21727059	3L_21727059_SNP [dm3] 3L_21733959_SNP [dm6]	G	A	5.535e^-5	0.926	UPSTREAM CG14573 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	18188776	3L_18188776_SNP [dm3] 3L_18195676_SNP [dm6]	A	G	5.634e^-5	0.926	UPSTREAM CR45234 INTERGENIC
3L	3837280	3L_3837280_SNP [dm3] 3L_3837280_SNP [dm6]	C	A	5.675e^-5	0.926	SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3231238	X_3231238_SNP [dm3] X_3337205_SNP [dm6]	T	G	5.675e^-5	0.926	INTRON CR44886 & 1 other
3R	23934448	3R_23934448_SNP [dm3] 3R_28108726_SNP [dm6]	C	A	5.836e^-5	0.926	INTERGENIC
3R	22021675	3R_22021675_SNP [dm3] 3R_26195953_SNP [dm6]	A	G	6.052e^-5	0.926	INTRON CR44320
3L	15910645	3L_15910645_SNP [dm3] 3L_15917545_SNP [dm6]	T	C	6.091e^-5	0.926	INTRON sff
3L	15910649	3L_15910649_SNP [dm3] 3L_15917549_SNP [dm6]	A	G	6.091e^-5	0.926	INTRON sff
3L	5629919	3L_5629919_SNP [dm3] 3L_5636819_SNP [dm6]	A	G	6.198e^-5	0.926	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
3L	10695005	3L_10695005_SNP [dm3] 3L_10701905_SNP [dm6]	T	A	6.206e^-5	0.926	INTERGENIC
2R	9558530	2R_9558530_SNP [dm3] 2R_13671025_SNP [dm6]	C	G	6.274e^-5	0.926	NON_SYNONYMOUS_CODING CG18368 DOWNSTREAM CR45031 INTRON fas
2R	10961749	2R_10961749_SNP [dm3] 2R_15074244_SNP [dm6]	C	T	6.284e^-5	0.926	INTERGENIC
X	15144531	X_15144531_SNP [dm3] X_15250498_SNP [dm6]	C	T	6.331e^-5	0.926	INTERGENIC
3R	18090618	3R_18090618_SNP [dm3] 3R_22264896_SNP [dm6]	T	G	6.474e^-5	0.926	INTRON SKIP
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	6.560e^-5	0.926	INTERGENIC
3L	21735600	3L_21735600_SNP [dm3] 3L_21742500_SNP [dm6]	G	A	6.592e^-5	0.926	DOWNSTREAM CG14565 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
X	20916509	X_20916509_SNP [dm3] X_21045482_SNP [dm6]	T	A	6.601e^-5	0.926	INTRON Cbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18307123	3L_18307123_SNP [dm3] 3L_18314023_SNP [dm6]	T	C	6.654e^-5	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17652226	3R_17652226_SNP [dm3] 3R_21826504_SNP [dm6]	A	G	6.689e^-5	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23388847	3R_23388847_SNP [dm3] 3R_27563125_SNP [dm6]	T	G	6.718e^-5	0.926	UTR_3_PRIME wdb
X	17132768	X_17132768_SNP [dm3] X_17238735_SNP [dm6]	T	A	7.100e^-5	0.926	INTRON f
3L	6782397	3L_6782397_SNP [dm3] 3L_6789297_SNP [dm6]	G	A	7.197e^-5	0.926	UPSTREAM vvl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2711967	2L_2711967_SNP [dm3] 2L_2711967_SNP [dm6]	A	T	7.216e^-5	0.926	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	7.283e^-5	0.926	INTERGENIC
2R	20053179	2R_20053179_SNP [dm3] 2R_24165656_SNP [dm6]	C	A	7.370e^-5	0.926	INTRON CG3328
2L	13740426	2L_13740426_SNP [dm3] 2L_13740426_SNP [dm6]	A	G	7.380e^-5	0.926	INTERGENIC
2L	15337443	2L_15337443_SNP [dm3] 2L_15337443_SNP [dm6]	T	A	7.504e^-5	0.926	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6740624	2R_6740624_SNP [dm3] 2R_10853119_SNP [dm6]	C	T	7.570e^-5	0.926	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	14481183	3L_14481183_SNP [dm3] 3L_14488083_SNP [dm6]	T	G	7.609e^-5	0.926	INTRON bbg	TF binding site mE1_TFBS_cad
X	13503130	X_13503130_SNP [dm3] X_13609097_SNP [dm6]	G	A	7.646e^-5	0.926	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
2R	4807317	2R_4807317_SNP [dm3] 2R_8919812_SNP [dm6]	G	T	7.674e^-5	0.926	SYNONYMOUS_CODING CG8248 UPSTREAM CG34219 DOWNSTREAM Spt
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	7.713e^-5	0.926	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	10961747	2R_10961747_SNP [dm3] 2R_15074242_SNP [dm6]	C	T	7.754e^-5	0.926	INTERGENIC
X	13503125	X_13503125_SNP [dm3] X_13609092_SNP [dm6]	C	T	7.797e^-5	0.926	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
2R	10504988	2R_10504988_SNP [dm3] 2R_14617483_SNP [dm6]	T	C	7.963e^-5	0.926	SYNONYMOUS_CODING Su_var_2-HP2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	21905026	3R_21905026_SNP [dm3] 3R_26079304_SNP [dm6]	A	T	8.010e^-5	0.926	INTRON dys
3L	1945098	3L_1945098_SNP [dm3] 3L_1945098_SNP [dm6]	A	C	8.054e^-5	0.926	INTRON mu2
X	20519100	X_20519100_SNP [dm3] X_20648073_SNP [dm6]	A	C	8.246e^-5	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1
3L	3836193	3L_3836193_SNP [dm3] 3L_3836193_SNP [dm6]	G	A	8.247e^-5	0.926	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8975238	3R_8975238_SNP [dm3] 3R_13149516_SNP [dm6]	A	G	8.300e^-5	0.926	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	2711935	2L_2711935_SNP [dm3] 2L_2711935_SNP [dm6]	A	T	8.334e^-5	0.926	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5572543	X_5572543_SNP [dm3] X_5678510_SNP [dm6]	G	T	8.387e^-5	0.926	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	14820475	3R_14820475_SNP [dm3] 3R_18994753_SNP [dm6]	A	G	8.442e^-5	0.926	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3836661	3L_3836661_SNP [dm3] 3L_3836661_SNP [dm6]	T	A	8.502e^-5	0.926	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21776527	3L_21776527_DEL [dm3] 3L_21783427_DEL [dm6]	TT	T	8.513e^-5	0.926	INTERGENIC
2L	20329590	2L_20329590_SNP [dm3] 2L_20329590_SNP [dm6]	C	T	8.588e^-5	0.926	INTRON spir
2L	4042803	2L_4042803_SNP [dm3] 2L_4042803_SNP [dm6]	C	T	8.606e^-5	0.926	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6740167	2R_6740167_SNP [dm3] 2R_10852662_SNP [dm6]	T	C	8.615e^-5	0.926	UPSTREAM CR45136 INTRON CG30015
X	13355684	X_13355684_SNP [dm3] X_13461651_SNP [dm6]	A	G	8.637e^-5	0.926	INTRON Neto
3L	1361955	3L_1361955_SNP [dm3] 3L_1361955_SNP [dm6]	A	G	8.714e^-5	0.926	INTRON Ptp61F
2R	12193361	2R_12193361_SNP [dm3] 2R_16305856_SNP [dm6]	G	A	8.732e^-5	0.926	EXON CR45232
3R	18090649	3R_18090649_SNP [dm3] 3R_22264927_SNP [dm6]	C	T	8.800e^-5	0.926	INTRON SKIP
2R	20053251	2R_20053251_SNP [dm3] 2R_24165728_SNP [dm6]	C	T	8.805e^-5	0.926	INTRON CG3328
3L	21732097	3L_21732097_SNP [dm3] 3L_21738997_SNP [dm6]	T	A	8.849e^-5	0.926	UPSTREAM CG14567 DOWNSTREAM CG14566 INTERGENIC
3R	23452230	3R_23452230_DEL [dm3] 3R_27626508_DEL [dm6]	AA	A	8.849e^-5	0.926	UPSTREAM CG5612 INTRON Tusp
3L	2035867	3L_2035867_SNP [dm3] 3L_2035867_SNP [dm6]	T	C	8.914e^-5	0.926	INTERGENIC
2R	10961739	2R_10961739_SNP [dm3] 2R_15074234_SNP [dm6]	A	C	8.920e^-5	0.926	INTERGENIC
3R	25850577	3R_25850577_SNP [dm3] 3R_30024855_SNP [dm6]	A	T	9.007e^-5	0.926	INTRON Axn
3R	26523504	3R_26523504_SNP [dm3] 3R_30697782_SNP [dm6]	G	A	9.034e^-5	0.926	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8123257	2R_8123257_SNP [dm3] 2R_12235752_SNP [dm6]	G	T	9.040e^-5	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10000962	2R_10000962_SNP [dm3] 2R_14113457_SNP [dm6]	A	T	9.060e^-5	0.926	INTRON Prosap	TF binding site mE1_TFBS_bab1
2R	17812675	2R_17812675_SNP [dm3] 2R_21925170_SNP [dm6]	C	T	9.089e^-5	0.926	INTRON Fili
2L	21806726	2L_21806726_SNP [dm3] 2L_21806726_SNP [dm6]	A	G	9.089e^-5	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15807587	3R_15807587_SNP [dm3] 3R_19981865_SNP [dm6]	T	C	9.102e^-5	0.926	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med
2L	8330031	2L_8330031_SNP [dm3] 2L_8330031_SNP [dm6]	C	G	9.125e^-5	0.926	INTRON CG14275
3L	15768017	3L_15768017_SNP [dm3] 3L_15774917_SNP [dm6]	G	T	9.179e^-5	0.926	INTERGENIC
3R	9951312	3R_9951312_SNP [dm3] 3R_14125590_SNP [dm6]	A	G	9.269e^-5	0.926	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20109041	2R_20109041_SNP [dm3] 2R_24221518_SNP [dm6]	C	T	9.334e^-5	0.926	INTRON CG30419
3R	20855685	3R_20855685_SNP [dm3] 3R_25029963_SNP [dm6]	T	C	9.355e^-5	0.926	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
3R	27783279	3R_27783279_INS [dm3] 3R_31957557_INS [dm6]	C	CTGC	9.418e^-5	0.926	INTRON heph	transposable element FlyBase
2R	6244135	2R_6244135_SNP [dm3] 2R_10356630_SNP [dm6]	C	T	9.444e^-5	0.926	SYNONYMOUS_CODING CG42733 UPSTREAM CG12902 & 1 other INTRON CG42732
2L	11191207	2L_11191207_SNP [dm3] 2L_11191207_SNP [dm6]	G	A	9.482e^-5	0.926	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23439784	3R_23439784_SNP [dm3] 3R_27614062_SNP [dm6]	T	G	9.661e^-5	0.926	INTRON Tusp
X	8777054	X_8777054_INS [dm3] X_8883021_INS [dm6]	G	TTTTAC	9.670e^-5	0.926	INTRON Moe
3R	7754207	3R_7754207_SNP [dm3] 3R_11928485_SNP [dm6]	A	G	9.687e^-5	0.926	INTRON Cad87A
3R	25637230	3R_25637230_SNP [dm3] 3R_29811508_SNP [dm6]	C	A	9.911e^-5	0.926	SPLICE_SITE_REGION ca INTRON ca
2L	9371291	2L_9371291_SNP [dm3] 2L_9371291_SNP [dm6]	C	A	9.950e^-5	0.926	UTR_3_PRIME Shawl UPSTREAM CR43865
2R	6740149	2R_6740149_SNP [dm3] 2R_10852644_SNP [dm6]	G	T	1.000e^-4	0.926	UPSTREAM CR45136 INTRON CG30015
3R	8939703	3R_8939703_SNP [dm3] 3R_13113981_SNP [dm6]	T	G	1.009e^-4	0.926	INTRON timeout
X	1792263	X_1792263_SNP [dm3] X_1898230_SNP [dm6]	T	A	1.015e^-4	0.926	INTRON arm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	14320236	2L_14320236_SNP [dm3] 2L_14320236_SNP [dm6]	C	T	1.029e^-4	0.926	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	18953963	X_18953963_SNP [dm3] X_19059930_SNP [dm6]	C	G	1.032e^-4	0.926	INTRON CG14190
2L	10039855	2L_10039855_SNP [dm3] 2L_10039855_SNP [dm6]	T	C	1.032e^-4	0.926	DOWNSTREAM obst-B INTERGENIC
2R	6392974	2R_6392974_SNP [dm3] 2R_10505469_SNP [dm6]	T	A	1.033e^-4	0.926	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12056080	2L_12056080_SNP [dm3] 2L_12056080_SNP [dm6]	A	G	1.038e^-4	0.926	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	19445486	X_19445486_SNP [dm3] X_19551453_SNP [dm6]	G	A	1.047e^-4	0.926	UPSTREAM mir-973 & 1 other DOWNSTREAM mir-972 INTERGENIC
2R	20053207	2R_20053207_SNP [dm3] 2R_24165684_SNP [dm6]	A	C	1.053e^-4	0.926	INTRON CG3328
3L	3547227	3L_3547227_SNP [dm3] 3L_3547227_SNP [dm6]	T	C	1.059e^-4	0.926	INTRON Eip63E
2R	4674884	2R_4674884_SNP [dm3] 2R_8787379_SNP [dm6]	A	G	1.068e^-4	0.926	INTERGENIC
3L	6782255	3L_6782255_SNP [dm3] 3L_6789155_SNP [dm6]	G	C	1.072e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10964480	3L_10964480_SNP [dm3] 3L_10971380_SNP [dm6]	T	C	1.075e^-4	0.926	INTERGENIC
2R	6740176	2R_6740176_SNP [dm3] 2R_10852671_SNP [dm6]	T	C	1.075e^-4	0.926	UPSTREAM CR45136 INTRON CG30015
2L	14320233	2L_14320233_SNP [dm3] 2L_14320233_SNP [dm6]	T	C	1.084e^-4	0.926	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10548749	2R_10548749_SNP [dm3] 2R_14661244_SNP [dm6]	T	C	1.086e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1824552	3L_1824552_SNP [dm3] 3L_1824552_SNP [dm6]	T	A	1.092e^-4	0.926	SYNONYMOUS_CODING Cpr62Ba
2L	1724859	2L_1724859_DEL [dm3] 2L_1724859_DEL [dm6]	TTGAACACCGTGTATATTCG...	T	1.093e^-4	0.926	UTR_3_PRIME Eno UPSTREAM Rim2 DOWNSTREAM Eno	TF binding site mE1_TFBS_Ubx
3L	3834499	3L_3834499_SNP [dm3] 3L_3834499_SNP [dm6]	G	A	1.095e^-4	0.926	SYNONYMOUS_CODING enc INTRON enc
3R	18692387	3R_18692387_SNP [dm3] 3R_22866665_SNP [dm6]	G	A	1.096e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14820476	3R_14820476_SNP [dm3] 3R_18994754_SNP [dm6]	G	A	1.107e^-4	0.926	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11971563	2R_11971563_SNP [dm3] 2R_16084058_SNP [dm6]	A	G	1.112e^-4	0.926	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad
3R	18692019	3R_18692019_SNP [dm3] 3R_22866297_SNP [dm6]	A	C	1.113e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23372971	3R_23372971_SNP [dm3] 3R_27547249_SNP [dm6]	T	C	1.124e^-4	0.926	SYNONYMOUS_CODING Gr98d DOWNSTREAM Klp98A	TF binding site mE1_TFBS_bab1
3R	8379927	3R_8379927_SNP [dm3] 3R_12554205_SNP [dm6]	G	A	1.124e^-4	0.926	INTRON Octbeta2R
2R	12193527	2R_12193527_SNP [dm3] 2R_16306022_SNP [dm6]	C	T	1.133e^-4	0.926	EXON CR45232
3L	10219033	3L_10219033_SNP [dm3] 3L_10225933_SNP [dm6]	G	A	1.140e^-4	0.926	UPSTREAM scramb1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3849651	3L_3849651_SNP [dm3] 3L_3849651_SNP [dm6]	G	T	1.147e^-4	0.926	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8123249	2R_8123249_SNP [dm3] 2R_12235744_SNP [dm6]	T	A	1.155e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6442470	2R_6442470_SNP [dm3] 2R_10554965_SNP [dm6]	A	T	1.156e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	12193338	2R_12193338_SNP [dm3] 2R_16305833_SNP [dm6]	C	A	1.166e^-4	0.926	EXON CR45232
2L	2661166	2L_2661166_SNP [dm3] 2L_2661166_SNP [dm6]	C	T	1.184e^-4	0.926	INTERGENIC
2R	12193524	2R_12193524_SNP [dm3] 2R_16306019_SNP [dm6]	C	T	1.185e^-4	0.926	EXON CR45232
3L	1951458	3L_1951458_SNP [dm3] 3L_1951458_SNP [dm6]	C	A	1.193e^-4	0.926	NON_SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10525914	2R_10525914_SNP [dm3] 2R_14638409_SNP [dm6]	C	T	1.197e^-4	0.926	UPSTREAM CG43236 & 1 other INTERGENIC
3L	12062645	3L_12062645_SNP [dm3] 3L_12069545_SNP [dm6]	C	T	1.200e^-4	0.926	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18072035	2R_18072035_SNP [dm3] 2R_22184530_SNP [dm6]	C	T	1.201e^-4	0.926	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20053279	2R_20053279_SNP [dm3] 2R_24165756_SNP [dm6]	A	G	1.212e^-4	0.926	INTRON CG3328
2L	8888767	2L_8888767_SNP [dm3] 2L_8888767_SNP [dm6]	A	G	1.217e^-4	0.926	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	3834234	3L_3834234_SNP [dm3] 3L_3834234_SNP [dm6]	C	T	1.220e^-4	0.926	INTRON enc
3L	6563355	3L_6563355_SNP [dm3] 3L_6570255_SNP [dm6]	A	T	1.222e^-4	0.926	INTRON CG18769 & 1 other
2R	12193350	2R_12193350_SNP [dm3] 2R_16305845_SNP [dm6]	A	G	1.223e^-4	0.926	EXON CR45232
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	1.236e^-4	0.926	INTRON X11Lbeta
2R	10199343	2R_10199343_SNP [dm3] 2R_14311838_SNP [dm6]	C	T	1.241e^-4	0.926	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1010834	3L_1010834_SNP [dm3] 3L_1010834_SNP [dm6]	C	G	1.241e^-4	0.926	INTRON trio
3L	18234146	3L_18234146_SNP [dm3] 3L_18241046_SNP [dm6]	C	T	1.251e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3849657	3L_3849657_SNP [dm3] 3L_3849657_SNP [dm6]	T	C	1.251e^-4	0.926	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16462285	2R_16462285_SNP [dm3] 2R_20574780_SNP [dm6]	G	A	1.259e^-4	0.926	INTRON qsm
2L	21700077	2L_21700077_SNP [dm3] 2L_21700077_SNP [dm6]	A	C	1.259e^-4	0.926	INTRON CG31619
X	8775985	X_8775985_SNP [dm3] X_8881952_SNP [dm6]	G	A	1.260e^-4	0.926	UPSTREAM Moe INTRON Moe
3R	14820466	3R_14820466_SNP [dm3] 3R_18994744_SNP [dm6]	C	A	1.263e^-4	0.926	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	16895055	X_16895055_SNP [dm3] X_17001022_SNP [dm6]	G	A	1.272e^-4	0.926	INTRON CG45002
3R	20855692	3R_20855692_SNP [dm3] 3R_25029970_SNP [dm6]	G	T	1.276e^-4	0.926	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
2L	7634552	2L_7634552_SNP [dm3] 2L_7634552_SNP [dm6]	G	A	1.289e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15587414	2R_15587414_SNP [dm3] 2R_19699909_SNP [dm6]	A	T	1.293e^-4	0.926	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
3R	14532038	3R_14532038_SNP [dm3] 3R_18706316_SNP [dm6]	A	T	1.293e^-4	0.926	INTRON VAChT & 1 other
3R	23403198	3R_23403198_SNP [dm3] 3R_27577476_SNP [dm6]	C	A	1.296e^-4	0.926	INTRON wdb
3L	3834455	3L_3834455_SNP [dm3] 3L_3834455_SNP [dm6]	G	A	1.298e^-4	0.926	NON_SYNONYMOUS_CODING enc INTRON enc
3L	1098245	3L_1098245_SNP [dm3] 3L_1098245_SNP [dm6]	G	A	1.299e^-4	0.926	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10199240	2R_10199240_SNP [dm3] 2R_14311735_SNP [dm6]	A	C	1.300e^-4	0.926	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10199258	2R_10199258_SNP [dm3] 2R_14311753_SNP [dm6]	G	C	1.300e^-4	0.926	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4242069	X_4242069_SNP [dm3] X_4348036_SNP [dm6]	T	C	1.308e^-4	0.926	INTRON norpA
3R	23484127	3R_23484127_SNP [dm3] 3R_27658405_SNP [dm6]	C	A	1.309e^-4	0.926	INTRON Mlc1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11066844	2L_11066844_SNP [dm3] 2L_11066844_SNP [dm6]	C	A	1.313e^-4	0.926	START_GAINED Samuel UTR_5_PRIME Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12176406	2R_12176406_SNP [dm3] 2R_16288901_SNP [dm6]	G	A	1.316e^-4	0.926	SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CR43730	TF binding site mE1_TFBS_cad
2L	18525805	2L_18525805_SNP [dm3] 2L_18525805_SNP [dm6]	C	A	1.321e^-4	0.926	INTRON CG10211
2L	16187978	2L_16187978_SNP [dm3] 2L_16187978_SNP [dm6]	C	T	1.325e^-4	0.926	INTRON Ca-alpha1D
2L	8464118	2L_8464118_SNP [dm3] 2L_8464118_SNP [dm6]	G	A	1.328e^-4	0.926	UPSTREAM fu2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	519255	2L_519255_INS [dm3] 2L_519255_INS [dm6]	A	ACCA	1.333e^-4	0.926	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	21764645	3L_21764645_SNP [dm3] 3L_21771545_SNP [dm6]	G	C	1.336e^-4	0.926	DOWNSTREAM CG7370 INTRON CG42689
X	13503094	X_13503094_SNP [dm3] X_13609061_SNP [dm6]	C	T	1.343e^-4	0.926	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
2L	18147696	2L_18147696_SNP [dm3] 2L_18147696_SNP [dm6]	T	C	1.344e^-4	0.926	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21116856	2R_21116856_SNP [dm3] 2R_25229333_SNP [dm6]	T	A	1.345e^-4	0.926	UTR_3_PRIME Kr INTRON CG9380
X	19445612	X_19445612_SNP [dm3] X_19551579_SNP [dm6]	A	T	1.348e^-4	0.926	UPSTREAM mir-974 DOWNSTREAM mir-972 & 1 other EXON mir-973
2L	4488433	2L_4488433_SNP [dm3] 2L_4488433_SNP [dm6]	T	C	1.355e^-4	0.926	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12888982	3R_12888982_SNP [dm3] 3R_17063260_SNP [dm6]	T	A	1.360e^-4	0.926	INTRON Dad
3L	3829949	3L_3829949_SNP [dm3] 3L_3829949_SNP [dm6]	T	C	1.361e^-4	0.926	INTRON enc
3L	3829969	3L_3829969_SNP [dm3] 3L_3829969_SNP [dm6]	G	A	1.361e^-4	0.926	INTRON enc
X	12163565	X_12163565_SNP [dm3] X_12269532_SNP [dm6]	T	C	1.366e^-4	0.926	INTRON Ten-a
3R	6562609	3R_6562609_SNP [dm3] 3R_10736887_SNP [dm6]	C	G	1.367e^-4	0.926	UPSTREAM tomboy20 DOWNSTREAM TkR86C INTERGENIC
3R	6332341	3R_6332341_SNP [dm3] 3R_10506619_SNP [dm6]	C	T	1.368e^-4	0.926	DOWNSTREAM hth INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18300574	3L_18300574_DEL [dm3] 3L_18307474_DEL [dm6]	TT	T	1.373e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16575179	2L_16575179_SNP [dm3] 2L_16575179_SNP [dm6]	G	A	1.374e^-4	0.926	INTRON CG42389
2R	18750933	2R_18750933_SNP [dm3] 2R_22863410_SNP [dm6]	G	A	1.383e^-4	0.926	INTERGENIC
2L	3969308	2L_3969308_SNP [dm3] 2L_3969308_SNP [dm6]	T	A	1.386e^-4	0.926	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	3838290	3L_3838290_SNP [dm3] 3L_3838290_SNP [dm6]	T	C	1.387e^-4	0.926	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1066551	3L_1066551_SNP [dm3] 3L_1066551_SNP [dm6]	G	T	1.390e^-4	0.926	INTRON bab1
3R	10839264	3R_10839264_SNP [dm3] 3R_15013542_SNP [dm6]	T	A	1.404e^-4	0.926	INTERGENIC
3L	21726932	3L_21726932_SNP [dm3] 3L_21733832_SNP [dm6]	C	T	1.406e^-4	0.926	UPSTREAM CG14573 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	12064463	3L_12064463_SNP [dm3] 3L_12071363_SNP [dm6]	A	G	1.415e^-4	0.926	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	9949596	3L_9949596_SNP [dm3] 3L_9956496_SNP [dm6]	G	A	1.416e^-4	0.926	INTRON CG34356
2L	6309664	2L_6309664_SNP [dm3] 2L_6309664_SNP [dm6]	C	T	1.427e^-4	0.926	UPSTREAM CG43922 DOWNSTREAM CG13984 INTRON Ddr
3R	18691970	3R_18691970_SNP [dm3] 3R_22866248_SNP [dm6]	C	T	1.432e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20977467	2R_20977467_SNP [dm3] 2R_25089944_SNP [dm6]	G	A	1.439e^-4	0.926	INTRON lov	transposable element FlyBase
2R	628542	2R_628542_SNP [dm3] 2R_4741037_SNP [dm6]	G	A	1.444e^-4	0.926	INTERGENIC	transposable element FlyBase
2L	2711960	2L_2711960_SNP [dm3] 2L_2711960_SNP [dm6]	G	A	1.445e^-4	0.926	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7318060	2L_7318060_SNP [dm3] 2L_7318060_SNP [dm6]	A	C	1.469e^-4	0.926	INTERGENIC
X	16514849	X_16514849_DEL [dm3] X_16620816_DEL [dm6]	TCGT	T	1.470e^-4	0.926	INTRON CG9782
2L	9069622	2L_9069622_SNP [dm3] 2L_9069622_SNP [dm6]	G	T	1.474e^-4	0.926	INTRON CG31708
2L	17605568	2L_17605568_INS [dm3] 2L_17605568_INS [dm6]	T	TTTTTTGT	1.478e^-4	0.926	DOWNSTREAM CR44412 INTERGENIC
X	12163421	X_12163421_SNP [dm3] X_12269388_SNP [dm6]	G	A	1.482e^-4	0.926	INTRON Ten-a
3L	18863356	3L_18863356_SNP [dm3] 3L_18870256_SNP [dm6]	G	C	1.521e^-4	0.926	UTR_5_PRIME Blos3 UTR_3_PRIME Rad9 DOWNSTREAM Rad9 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2R	12193333	2R_12193333_SNP [dm3] 2R_16305828_SNP [dm6]	C	T	1.527e^-4	0.926	EXON CR45232
2R	6442384	2R_6442384_DEL [dm3] 2R_10554879_DEL [dm6]	AGAAAA	TT	1.531e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13433819	2L_13433819_SNP [dm3] 2L_13433819_SNP [dm6]	T	C	1.532e^-4	0.926	INTRON CG42784	TF binding site mE1_TFBS_cad
X	12163604	X_12163604_SNP [dm3] X_12269571_SNP [dm6]	C	T	1.536e^-4	0.926	INTRON Ten-a
3R	18090610	3R_18090610_SNP [dm3] 3R_22264888_SNP [dm6]	A	G	1.537e^-4	0.926	INTRON SKIP
3R	26495534	3R_26495534_SNP [dm3] 3R_30669812_SNP [dm6]	C	T	1.544e^-4	0.926	INTERGENIC
X	2784819	X_2784819_SNP [dm3] X_2890786_SNP [dm6]	T	G	1.553e^-4	0.926	UTR_5_PRIME CG3526 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	1.557e^-4	0.926	INTERGENIC
X	12163578	X_12163578_SNP [dm3] X_12269545_SNP [dm6]	A	T	1.560e^-4	0.926	INTRON Ten-a
3R	23210969	3R_23210969_SNP [dm3] 3R_27385247_SNP [dm6]	T	C	1.566e^-4	0.926	INTRON side
2L	8464083	2L_8464083_SNP [dm3] 2L_8464083_SNP [dm6]	A	G	1.568e^-4	0.926	UPSTREAM fu2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	4371829	2R_4371829_SNP [dm3] 2R_8484324_SNP [dm6]	C	A	1.573e^-4	0.926	UPSTREAM mtt INTRON mtt
3L	6782215	3L_6782215_SNP [dm3] 3L_6789115_SNP [dm6]	T	C	1.574e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10392270	3R_10392270_DEL [dm3] 3R_14566548_DEL [dm6]	TAAGACGTCTT...	T	1.576e^-4	0.926	UTR_3_PRIME CG31313 DOWNSTREAM CG31313 & 1 other
2R	10006596	2R_10006596_SNP [dm3] 2R_14119091_SNP [dm6]	G	A	1.580e^-4	0.926	INTRON Prosap
3R	8975278	3R_8975278_SNP [dm3] 3R_13149556_SNP [dm6]	A	G	1.582e^-4	0.926	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	21724981	3L_21724981_SNP [dm3] 3L_21731881_SNP [dm6]	C	G	1.582e^-4	0.926	UPSTREAM CG14569 DOWNSTREAM CG14568 INTERGENIC
2R	20051031	2R_20051031_INS [dm3] 2R_24163508_INS [dm6]	A	AG	1.584e^-4	0.926	INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	27789219	3R_27789219_SNP [dm3] 3R_31963497_SNP [dm6]	T	G	1.587e^-4	0.926	INTRON heph	TF binding site BDTNP1_TFBS_twi
2R	18333983	2R_18333983_SNP [dm3] 2R_22446478_SNP [dm6]	T	C	1.590e^-4	0.926	INTERGENIC
2L	8710724	2L_8710724_SNP [dm3] 2L_8710724_SNP [dm6]	C	A	1.591e^-4	0.926	SPLICE_SITE_REGION raw INTRON raw	TF binding site mE1_TFBS_chinmo
2R	16179002	2R_16179002_SNP [dm3] 2R_20291497_SNP [dm6]	T	C	1.591e^-4	0.926	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2L	7633603	2L_7633603_SNP [dm3] 2L_7633603_SNP [dm6]	A	G	1.592e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13740452	2L_13740452_SNP [dm3] 2L_13740452_SNP [dm6]	A	G	1.595e^-4	0.926	INTERGENIC
3L	18033144	3L_18033144_SNP [dm3] 3L_18040044_SNP [dm6]	A	T	1.606e^-4	0.926	UPSTREAM CG32192 INTRON Eip75B
X	6207580	X_6207580_SNP [dm3] X_6313547_SNP [dm6]	C	T	1.612e^-4	0.926	INTRON CG15894	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8740505	X_8740505_SNP [dm3] X_8846472_SNP [dm6]	G	A	1.612e^-4	0.926	INTRON CG12075
3R	23495246	3R_23495246_SNP [dm3] 3R_27669524_SNP [dm6]	T	C	1.619e^-4	0.926	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	520004	2L_520004_SNP [dm3] 2L_520004_SNP [dm6]	T	C	1.622e^-4	0.926	INTRON ush	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	18406124	X_18406124_SNP [dm3] X_18512091_SNP [dm6]	C	A	1.631e^-4	0.926	UTR_5_PRIME Ggt-1 DOWNSTREAM CG6470	TF binding site BDTNP1_TFBS_dl
2L	9245751	2L_9245751_DEL [dm3] 2L_9245751_DEL [dm6]	TT	T	1.632e^-4	0.926	INTRON tai
2R	6747217	2R_6747217_SNP [dm3] 2R_10859712_SNP [dm6]	T	A	1.642e^-4	0.926	INTRON CG30015 EXON CR44302	TF binding site BDTNP1_TFBS_dl
3L	22086624	3L_22086624_SNP [dm3] 3L_22093524_SNP [dm6]	T	C	1.652e^-4	0.926	INTERGENIC
3R	24583537	3R_24583537_SNP [dm3] 3R_28757815_SNP [dm6]	G	T	1.663e^-4	0.926	SYNONYMOUS_CODING aqrs UPSTREAM CG9997
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	1.669e^-4	0.926	INTERGENIC
3L	18033134	3L_18033134_SNP [dm3] 3L_18040034_SNP [dm6]	A	G	1.674e^-4	0.926	UPSTREAM CG32192 INTRON Eip75B
3L	15893710	3L_15893710_SNP [dm3] 3L_15900610_SNP [dm6]	G	T	1.675e^-4	0.926	UTR_3_PRIME sff
2R	10537913	2R_10537913_SNP [dm3] 2R_14650408_SNP [dm6]	C	T	1.682e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	4712414	3R_4712414_SNP [dm3] 3R_8886692_SNP [dm6]	G	A	1.683e^-4	0.926	INTRON pyd
3R	19083516	3R_19083516_SNP [dm3] 3R_23257794_SNP [dm6]	T	A	1.687e^-4	0.926	UPSTREAM CG13827 INTRON wda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18808705	3L_18808705_SNP [dm3] 3L_18815605_SNP [dm6]	T	A	1.689e^-4	0.926	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18752803	3R_18752803_SNP [dm3] 3R_22927081_SNP [dm6]	C	T	1.691e^-4	0.926	INTRON klg
3R	19551148	3R_19551148_SNP [dm3] 3R_23725426_SNP [dm6]	G	A	1.692e^-4	0.926	INTRON CG10365
2L	14512847	2L_14512847_SNP [dm3] 2L_14512847_SNP [dm6]	A	G	1.692e^-4	0.926	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	26495261	3R_26495261_SNP [dm3] 3R_30669539_SNP [dm6]	T	G	1.694e^-4	0.926	INTERGENIC
2R	20975613	2R_20975613_SNP [dm3] 2R_25088090_SNP [dm6]	T	A	1.697e^-4	0.926	INTRON lov
3L	20986984	3L_20986984_SNP [dm3] 3L_20993884_SNP [dm6]	A	G	1.722e^-4	0.926	UTR_3_PRIME skd DOWNSTREAM CG12984 & 1 other
2L	20922707	2L_20922707_SNP [dm3] 2L_20922707_SNP [dm6]	C	A	1.725e^-4	0.926	NON_SYNONYMOUS_CODING Mtp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12193681	2R_12193681_SNP [dm3] 2R_16306176_SNP [dm6]	C	T	1.726e^-4	0.926	EXON CR45232
2R	9185661	2R_9185661_SNP [dm3] 2R_13298156_SNP [dm6]	C	T	1.730e^-4	0.926	SYNONYMOUS_CODING CG4734 UPSTREAM CG17047	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10029894	2R_10029894_SNP [dm3] 2R_14142389_SNP [dm6]	G	A	1.733e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
3L	1814688	3L_1814688_SNP [dm3] 3L_1814688_SNP [dm6]	C	A	1.742e^-4	0.926	INTRON GV1
3L	11519521	3L_11519521_SNP [dm3] 3L_11526421_SNP [dm6]	T	C	1.744e^-4	0.926	INTRON Mob2
3R	18692250	3R_18692250_SNP [dm3] 3R_22866528_SNP [dm6]	A	T	1.744e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5987523	X_5987523_SNP [dm3] X_6093490_SNP [dm6]	A	G	1.748e^-4	0.926	UPSTREAM Nep1 INTRON Nep1	TF binding site BDTNP1_TFBS_dl
2L	13123770	2L_13123770_SNP [dm3] 2L_13123770_SNP [dm6]	A	C	1.749e^-4	0.926	INTERGENIC
3R	15281393	3R_15281393_INS [dm3] 3R_19455671_INS [dm6]	C	CAAAACATGAAAG...	1.761e^-4	0.926	INTRON CG31221
2L	2928160	2L_2928160_SNP [dm3] 2L_2928160_SNP [dm6]	G	A	1.762e^-4	0.926	INTRON lilli
X	12876436	X_12876436_SNP [dm3] X_12982403_SNP [dm6]	C	T	1.771e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11154969	X_11154969_SNP [dm3] X_11260936_SNP [dm6]	G	A	1.771e^-4	0.926	INTRON CG44422
2R	20053711	2R_20053711_SNP [dm3] 2R_24166188_SNP [dm6]	A	G	1.777e^-4	0.926	UPSTREAM CG3328 INTRON CG3328
3R	14107071	3R_14107071_SNP [dm3] 3R_18281349_SNP [dm6]	T	C	1.781e^-4	0.926	INTRON eIF-1A
3L	19937672	3L_19937672_SNP [dm3] 3L_19944572_SNP [dm6]	T	G	1.784e^-4	0.926	INTRON Ac76E
2L	16003652	2L_16003652_SNP [dm3] 2L_16003652_SNP [dm6]	A	C	1.787e^-4	0.926	UPSTREAM CG13245 & 2 others DOWNSTREAM CR43826 INTRON beat-Ic
2L	17605565	2L_17605565_SNP [dm3] 2L_17605565_SNP [dm6]	C	T	1.796e^-4	0.926	DOWNSTREAM CR44412 INTERGENIC
2L	3811546	2L_3811546_SNP [dm3] 2L_3811546_SNP [dm6]	C	T	1.797e^-4	0.926	DOWNSTREAM Reph INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	594676	2R_594676_SNP [dm3] 2R_4707171_SNP [dm6]	G	A	1.803e^-4	0.926	INTRON Nipped-B
2R	6378694	2R_6378694_SNP [dm3] 2R_10491189_SNP [dm6]	A	G	1.805e^-4	0.926	DOWNSTREAM lola INTRON lola
3R	21950843	3R_21950843_INS [dm3] 3R_26125121_INS [dm6]	G	TCCTGTTTCCTGTT...	1.812e^-4	0.926	INTRON CG31324
2L	8464079	2L_8464079_SNP [dm3] 2L_8464079_SNP [dm6]	G	A	1.826e^-4	0.926	UPSTREAM fu2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	8464091	2L_8464091_SNP [dm3] 2L_8464091_SNP [dm6]	T	C	1.826e^-4	0.926	UPSTREAM fu2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	10964916	3L_10964916_SNP [dm3] 3L_10971816_SNP [dm6]	A	T	1.849e^-4	0.926	UPSTREAM CG14147 INTERGENIC
3R	20099919	3R_20099919_SNP [dm3] 3R_24274197_SNP [dm6]	T	C	1.876e^-4	0.926	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26581989	3R_26581989_SNP [dm3] 3R_30756267_SNP [dm6]	T	C	1.880e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17605564	2L_17605564_SNP [dm3] 2L_17605564_SNP [dm6]	C	T	1.882e^-4	0.926	DOWNSTREAM CR44412 INTERGENIC
3R	7754256	3R_7754256_SNP [dm3] 3R_11928534_SNP [dm6]	A	G	1.893e^-4	0.926	INTRON Cad87A
X	16536721	X_16536721_SNP [dm3] X_16642688_SNP [dm6]	C	T	1.907e^-4	0.926	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8464117	2L_8464117_SNP [dm3] 2L_8464117_SNP [dm6]	A	G	1.926e^-4	0.926	UPSTREAM fu2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	19011377	X_19011377_SNP [dm3] X_19117344_SNP [dm6]	A	T	1.927e^-4	0.926	INTERGENIC
X	3779922	X_3779922_SNP [dm3] X_3885889_SNP [dm6]	T	C	1.929e^-4	0.926	INTRON CG15239
3L	3785856	3L_3785856_SNP [dm3] 3L_3785856_SNP [dm6]	G	T	1.933e^-4	0.926	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22530143	3L_22530143_SNP [dm3] 3L_22537043_SNP [dm6]	C	T	1.941e^-4	0.926	INTERGENIC
2R	20971478	2R_20971478_SNP [dm3] 2R_25083955_SNP [dm6]	A	G	1.960e^-4	0.926	UTR_5_PRIME gol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6680951	2R_6680951_SNP [dm3] 2R_10793446_SNP [dm6]	A	G	1.964e^-4	0.926	DOWNSTREAM mthl13 INTRON CG33144
3L	1397476	3L_1397476_SNP [dm3] 3L_1397476_SNP [dm6]	T	C	1.974e^-4	0.926	UPSTREAM tRNA:E4:62Aa & 3 others INTRON Ptp61F
3R	22878830	3R_22878830_SNP [dm3] 3R_27053108_SNP [dm6]	C	T	1.979e^-4	0.926	INTRON RYa-R
3R	23934583	3R_23934583_SNP [dm3] 3R_28108861_SNP [dm6]	G	C	1.992e^-4	0.926	INTERGENIC
3R	25008422	3R_25008422_SNP [dm3] 3R_29182700_SNP [dm6]	G	T	1.992e^-4	0.926	INTRON CG14509
X	16930232	X_16930232_SNP [dm3] X_17036199_SNP [dm6]	A	G	2.000e^-4	0.926	INTRON CG45002
2R	10486744	2R_10486744_SNP [dm3] 2R_14599239_SNP [dm6]	C	A	2.002e^-4	0.926	SYNONYMOUS_CODING RpI1	TF binding site mE1_TFBS_sens
2L	11591554	2L_11591554_SNP [dm3] 2L_11591554_SNP [dm6]	A	G	2.004e^-4	0.926	SYNONYMOUS_CODING Acp33A INTRON kek2
X	4423329	X_4423329_SNP [dm3] X_4529296_SNP [dm6]	T	C	2.013e^-4	0.926	UPSTREAM CG3556 INTRON CR32773
2R	4551032	2R_4551032_SNP [dm3] 2R_8663527_SNP [dm6]	T	C	2.017e^-4	0.926	INTRON ptc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4701117	2R_4701117_SNP [dm3] 2R_8813612_SNP [dm6]	A	C	2.023e^-4	0.926	INTRON sns
2L	1643642	2L_1643642_INS [dm3] 2L_1643642_INS [dm6]	T	TGTTGCT	2.028e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12907194	X_12907194_SNP [dm3] X_13013161_SNP [dm6]	C	T	2.030e^-4	0.926	INTRON rad
X	8182305	X_8182305_INS [dm3] X_8288272_INS [dm6]	G	GG	2.035e^-4	0.926	INTRON nAChRalpha3
2R	628742	2R_628742_SNP [dm3] 2R_4741237_SNP [dm6]	A	C	2.043e^-4	0.926	INTERGENIC	transposable element FlyBase
2R	10216765	2R_10216765_SNP [dm3] 2R_14329260_SNP [dm6]	C	A	2.047e^-4	0.926	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
X	12157673	X_12157673_SNP [dm3] X_12263640_SNP [dm6]	A	C	2.055e^-4	0.926	INTRON Ten-a
2R	16178730	2R_16178730_SNP [dm3] 2R_20291225_SNP [dm6]	A	G	2.055e^-4	0.926	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	13632461	3L_13632461_SNP [dm3] 3L_13639361_SNP [dm6]	T	A	2.084e^-4	0.926	INTRON bru-3
X	3458697	X_3458697_SNP [dm3] X_3564664_SNP [dm6]	T	A	2.094e^-4	0.926	INTRON CG32791 & 1 other
3R	21950060	3R_21950060_SNP [dm3] 3R_26124338_SNP [dm6]	C	T	2.095e^-4	0.926	INTRON CG31324
X	2698954	X_2698954_SNP [dm3] X_2804921_SNP [dm6]	G	T	2.100e^-4	0.926	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25803397	3R_25803397_SNP [dm3] 3R_29977675_SNP [dm6]	T	C	2.102e^-4	0.926	INTERGENIC
2R	7804397	2R_7804397_SNP [dm3] 2R_11916892_SNP [dm6]	A	T	2.108e^-4	0.926	UPSTREAM CR44305 INTERGENIC
3R	23108149	3R_23108149_DEL [dm3] 3R_27282427_DEL [dm6]	CTTAGAAACTGAGC...	C	2.109e^-4	0.926	UPSTREAM mrt INTRON mrt	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17854445	3R_17854445_SNP [dm3] 3R_22028723_SNP [dm6]	T	C	2.112e^-4	0.926	SYNONYMOUS_CODING ND42 DOWNSTREAM CG13409	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9154915	2L_9154915_SNP [dm3] 2L_9154915_SNP [dm6]	C	T	2.120e^-4	0.926	INTRON CG32982
X	12876135	X_12876135_SNP [dm3] X_12982102_SNP [dm6]	G	A	2.142e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7208832	3L_7208832_SNP [dm3] 3L_7215732_SNP [dm6]	G	A	2.145e^-4	0.926	INTERGENIC
3L	8637623	3L_8637623_SNP [dm3] 3L_8644523_SNP [dm6]	C	T	2.145e^-4	0.926	DOWNSTREAM Cpr66D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16222109	2R_16222109_SNP [dm3] 2R_20334604_SNP [dm6]	G	T	2.161e^-4	0.926	INTERGENIC
3L	3838818	3L_3838818_SNP [dm3] 3L_3838818_SNP [dm6]	C	T	2.162e^-4	0.926	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8295521	2R_8295521_SNP [dm3] 2R_12408016_SNP [dm6]	T	C	2.165e^-4	0.926	SYNONYMOUS_CODING Cpr49Ag UPSTREAM CG30050 DOWNSTREAM Cpr49Af
2L	4303642	2L_4303642_SNP [dm3] 2L_4303642_SNP [dm6]	T	C	2.170e^-4	0.926	INTRON tutl
X	17162369	X_17162369_SNP [dm3] X_17268336_SNP [dm6]	A	G	2.173e^-4	0.926	UTR_5_PRIME f INTRON f
3R	6285050	3R_6285050_SNP [dm3] 3R_10459328_SNP [dm6]	G	T	2.179e^-4	0.926	INTERGENIC
3R	7647506	3R_7647506_SNP [dm3] 3R_11821784_SNP [dm6]	A	G	2.182e^-4	0.926	SYNONYMOUS_CODING CG6950 DOWNSTREAM CG6959	TF binding site mE1_TFBS_sens
2L	13433776	2L_13433776_SNP [dm3] 2L_13433776_SNP [dm6]	T	C	2.182e^-4	0.926	INTRON CG42784
2R	12193489	2R_12193489_INS [dm3] 2R_16305984_INS [dm6]	A	AGGATACAAAAT...	2.192e^-4	0.926	EXON CR45232
2R	12193680	2R_12193680_SNP [dm3] 2R_16306175_SNP [dm6]	C	T	2.193e^-4	0.926	EXON CR45232
2L	10444807	2L_10444807_SNP [dm3] 2L_10444807_SNP [dm6]	C	A	2.206e^-4	0.926	INTRON loh
2L	16381901	2L_16381901_SNP [dm3] 2L_16381901_SNP [dm6]	A	C	2.206e^-4	0.926	INTERGENIC
3L	3837388	3L_3837388_SNP [dm3] 3L_3837388_SNP [dm6]	G	A	2.209e^-4	0.926	SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23380306	3R_23380306_SNP [dm3] 3R_27554584_SNP [dm6]	A	C	2.210e^-4	0.926	INTRON Klp98A
3R	8952419	3R_8952419_SNP [dm3] 3R_13126697_SNP [dm6]	G	A	2.211e^-4	0.926	NON_SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4669978	3L_4669978_SNP [dm3] 3L_4669978_SNP [dm6]	A	T	2.230e^-4	0.926	INTRON axo	TF binding site BDTNP1_TFBS_twi
2R	16178084	2R_16178084_SNP [dm3] 2R_20290579_SNP [dm6]	T	A	2.239e^-4	0.926	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
X	13525294	X_13525294_SNP [dm3] X_13631261_SNP [dm6]	C	T	2.240e^-4	0.926	INTRON NFAT
2L	13433794	2L_13433794_DEL [dm3] 2L_13433794_DEL [dm6]	ATGTG	A	2.243e^-4	0.926	INTRON CG42784
3L	15159853	3L_15159853_SNP [dm3] 3L_15166753_SNP [dm6]	A	C	2.257e^-4	0.926	INTERGENIC
2R	7804379	2R_7804379_INS [dm3] 2R_11916874_INS [dm6]	A	AACTA	2.260e^-4	0.926	UPSTREAM CR44305 INTERGENIC
2R	13782550	2R_13782550_SNP [dm3] 2R_17895045_SNP [dm6]	T	C	2.261e^-4	0.926	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_twi
X	18953831	X_18953831_DEL [dm3] X_19059798_DEL [dm6]	AAGTG	C	2.262e^-4	0.926	INTRON CG14190
2L	8464107	2L_8464107_SNP [dm3] 2L_8464107_SNP [dm6]	G	T	2.262e^-4	0.926	UPSTREAM fu2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	19626781	3R_19626781_SNP [dm3] 3R_23801059_SNP [dm6]	T	G	2.276e^-4	0.926	UTR_3_PRIME mbc DOWNSTREAM CG33111
3R	20619541	3R_20619541_SNP [dm3] 3R_24793819_SNP [dm6]	A	C	2.286e^-4	0.926	INTRON Ets96B	TF binding site mE1_TFBS_cad
3L	23940964	3L_23940964_SNP [dm3] 3L_23947864_SNP [dm6]	T	A	2.286e^-4	0.926	INTRON CG40470
3R	14043944	3R_14043944_SNP [dm3] 3R_18218222_SNP [dm6]	T	A	2.291e^-4	0.926	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2L	518524	2L_518524_SNP [dm3] 2L_518524_SNP [dm6]	T	G	2.298e^-4	0.926	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20329676	2L_20329676_SNP [dm3] 2L_20329676_SNP [dm6]	T	G	2.300e^-4	0.926	INTRON spir
3R	20199043	3R_20199043_SNP [dm3] 3R_24373321_SNP [dm6]	G	A	2.318e^-4	0.926	UPSTREAM CG17782 DOWNSTREAM CG17781 INTERGENIC
3L	16037087	3L_16037087_SNP [dm3] 3L_16043987_SNP [dm6]	C	T	2.321e^-4	0.926	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	16037089	3L_16037089_SNP [dm3] 3L_16043989_SNP [dm6]	C	T	2.321e^-4	0.926	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	7134508	2R_7134508_SNP [dm3] 2R_11247003_SNP [dm6]	A	T	2.321e^-4	0.926	DOWNSTREAM CR30029 INTERGENIC
2L	13433785	2L_13433785_SNP [dm3] 2L_13433785_SNP [dm6]	A	T	2.328e^-4	0.926	INTRON CG42784
3L	22515882	3L_22515882_SNP [dm3] 3L_22522782_SNP [dm6]	G	C	2.330e^-4	0.926	INTERGENIC
3L	3827594	3L_3827594_DEL [dm3] 3L_3827594_DEL [dm6]	GCTTAAACGCTTTGGG...	G	2.333e^-4	0.926	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6697031	2R_6697031_SNP [dm3] 2R_10809526_SNP [dm6]	A	T	2.338e^-4	0.926	UTR_5_PRIME CG12935 UPSTREAM CG12935 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12788362	2R_12788362_SNP [dm3] 2R_16900857_SNP [dm6]	T	C	2.339e^-4	0.926	SYNONYMOUS_CODING inaC
3R	10515669	3R_10515669_SNP [dm3] 3R_14689947_SNP [dm6]	G	C	2.349e^-4	0.926	INTRON Meltrin
3L	4951792	3L_4951792_SNP [dm3] 3L_4951792_SNP [dm6]	A	G	2.352e^-4	0.926	INTRON Con
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	2.357e^-4	0.926	INTRON fas
2R	12873689	2R_12873689_SNP [dm3] 2R_16986184_SNP [dm6]	C	T	2.362e^-4	0.926	SYNONYMOUS_CODING Cbp53E
3L	11950088	3L_11950088_SNP [dm3] 3L_11956988_SNP [dm6]	T	C	2.372e^-4	0.926	SYNONYMOUS_CODING CG11570 DOWNSTREAM CG7248
2R	639567	2R_639567_SNP [dm3] 2R_4752062_SNP [dm6]	A	G	2.374e^-4	0.926	INTRON conu
3L	16058091	3L_16058091_SNP [dm3] 3L_16064991_SNP [dm6]	T	C	2.381e^-4	0.926	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11551544	3R_11551544_SNP [dm3] 3R_15725822_SNP [dm6]	C	T	2.387e^-4	0.926	INTERGENIC
X	18998674	X_18998674_SNP [dm3] X_19104641_SNP [dm6]	G	C	2.389e^-4	0.926	INTERGENIC
3L	13565166	3L_13565166_SNP [dm3] 3L_13572066_SNP [dm6]	C	T	2.398e^-4	0.926	INTRON bru-3
3R	9823019	3R_9823019_SNP [dm3] 3R_13997297_SNP [dm6]	A	C	2.406e^-4	0.926	INTRON rdx
3L	21916473	3L_21916473_SNP [dm3] 3L_21923373_SNP [dm6]	A	G	2.410e^-4	0.926	UTR_3_PRIME mub INTRON mub
2R	16477628	2R_16477628_SNP [dm3] 2R_20590123_SNP [dm6]	A	G	2.419e^-4	0.926	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5260871	X_5260871_SNP [dm3] X_5366838_SNP [dm6]	T	A	2.431e^-4	0.926	INTRON SK
2R	12193365	2R_12193365_SNP [dm3] 2R_16305860_SNP [dm6]	T	C	2.433e^-4	0.926	EXON CR45232
2R	15511322	2R_15511322_SNP [dm3] 2R_19623817_SNP [dm6]	A	C	2.433e^-4	0.926	INTRON sm
2L	4810779	2L_4810779_SNP [dm3] 2L_4810779_SNP [dm6]	A	T	2.449e^-4	0.926	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
3R	20451276	3R_20451276_SNP [dm3] 3R_24625554_SNP [dm6]	A	C	2.462e^-4	0.926	UTR_5_PRIME Syx18 UPSTREAM atl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	23452246	3R_23452246_INS [dm3] 3R_27626524_INS [dm6]	A	AC	2.471e^-4	0.926	UPSTREAM CG5612 INTRON Tusp
2L	6243980	2L_6243980_SNP [dm3] 2L_6243980_SNP [dm6]	C	G	2.478e^-4	0.926	INTERGENIC
3L	10798285	3L_10798285_DEL [dm3] 3L_10805185_DEL [dm6]	AG	A	2.484e^-4	0.926	DOWNSTREAM CR44347 EXON CR44347
2R	10199217	2R_10199217_SNP [dm3] 2R_14311712_SNP [dm6]	T	A	2.498e^-4	0.926	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16443047	X_16443047_SNP [dm3] X_16549014_SNP [dm6]	A	G	2.500e^-4	0.926	UTR_3_PRIME Arp2
2L	19028281	2L_19028281_SNP [dm3] 2L_19028281_SNP [dm6]	C	T	2.516e^-4	0.926	INTRON Side
X	4918299	X_4918299_SNP [dm3] X_5024266_SNP [dm6]	C	T	2.524e^-4	0.926	INTRON CR44833	regulatory region REDfly_CRMs
2R	4550989	2R_4550989_SNP [dm3] 2R_8663484_SNP [dm6]	C	T	2.526e^-4	0.926	INTRON ptc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12193439	2R_12193439_SNP [dm3] 2R_16305934_SNP [dm6]	A	C	2.530e^-4	0.926	EXON CR45232
3R	18692215	3R_18692215_SNP [dm3] 3R_22866493_SNP [dm6]	G	A	2.538e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16679499	2R_16679499_SNP [dm3] 2R_20791994_SNP [dm6]	A	G	2.540e^-4	0.926	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677 & 1 other
2R	11651130	2R_11651130_SNP [dm3] 2R_15763625_SNP [dm6]	G	A	2.552e^-4	0.926	INTRON Zasp52
2L	16630732	2L_16630732_SNP [dm3] 2L_16630732_SNP [dm6]	C	T	2.554e^-4	0.926	INTRON CG42389
2R	15587492	2R_15587492_SNP [dm3] 2R_19699987_SNP [dm6]	A	G	2.555e^-4	0.926	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
3R	27783520	3R_27783520_SNP [dm3] 3R_31957798_SNP [dm6]	T	G	2.559e^-4	0.926	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20321158	2L_20321158_SNP [dm3] 2L_20321158_SNP [dm6]	C	T	2.562e^-4	0.926	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7804384	2R_7804384_SNP [dm3] 2R_11916879_SNP [dm6]	G	T	2.563e^-4	0.926	UPSTREAM CR44305 INTERGENIC
2R	8697625	2R_8697625_SNP [dm3] 2R_12810120_SNP [dm6]	A	G	2.572e^-4	0.926	INTERGENIC
3L	8521941	3L_8521941_SNP [dm3] 3L_8528841_SNP [dm6]	T	G	2.582e^-4	0.926	INTRON foi
2R	602438	2R_602438_SNP [dm3] 2R_4714933_SNP [dm6]	C	T	2.588e^-4	0.926	INTRON Nipped-B
2R	19050477	2R_19050477_SNP [dm3] 2R_23162954_SNP [dm6]	T	G	2.589e^-4	0.926	DOWNSTREAM CG34371 & 1 other INTERGENIC
3L	10255257	3L_10255257_SNP [dm3] 3L_10262157_SNP [dm6]	T	A	2.594e^-4	0.926	INTERGENIC
2L	13433792	2L_13433792_SNP [dm3] 2L_13433792_SNP [dm6]	A	T	2.594e^-4	0.926	INTRON CG42784
X	6539195	X_6539195_SNP [dm3] X_6645162_SNP [dm6]	A	T	2.603e^-4	0.926	NON_SYNONYMOUS_CODING pigs
X	2250880	X_2250880_SNP [dm3] X_2356847_SNP [dm6]	C	T	2.613e^-4	0.926	INTRON ptr
2R	3869219	2R_3869219_SNP [dm3] 2R_7981714_SNP [dm6]	C	A	2.615e^-4	0.926	INTRON ACC	TF binding site mE1_TFBS_cad
3R	26591270	3R_26591270_SNP [dm3] 3R_30765548_SNP [dm6]	C	A	2.615e^-4	0.926	UPSTREAM zfh1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6964975	X_6964975_SNP [dm3] X_7070942_SNP [dm6]	T	C	2.619e^-4	0.926	INTRON CG4607
2L	20329679	2L_20329679_SNP [dm3] 2L_20329679_SNP [dm6]	T	C	2.621e^-4	0.926	INTRON spir
2R	11132253	2R_11132253_SNP [dm3] 2R_15244748_SNP [dm6]	T	A	2.624e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17511136	3R_17511136_SNP [dm3] 3R_21685414_SNP [dm6]	T	A	2.633e^-4	0.926	INTRON CG31176
2R	10525908	2R_10525908_SNP [dm3] 2R_14638403_SNP [dm6]	G	T	2.639e^-4	0.926	UPSTREAM CG43236 & 1 other INTERGENIC
2R	14138676	2R_14138676_SNP [dm3] 2R_18251171_SNP [dm6]	C	T	2.649e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3850994	3L_3850994_SNP [dm3] 3L_3850994_SNP [dm6]	G	A	2.653e^-4	0.926	INTRON Awh
2R	6326245	2R_6326245_INS [dm3] 2R_10438740_INS [dm6]	A	AG	2.669e^-4	0.926	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	10289430	3L_10289430_SNP [dm3] 3L_10296330_SNP [dm6]	T	C	2.675e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6816273	3L_6816273_SNP [dm3] 3L_6823173_SNP [dm6]	A	T	2.690e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12344543	3L_12344543_SNP [dm3] 3L_12351443_SNP [dm6]	C	G	2.704e^-4	0.926	UTR_5_PRIME CrzR
3R	20451260	3R_20451260_SNP [dm3] 3R_24625538_SNP [dm6]	A	G	2.711e^-4	0.926	START_GAINED Syx18 UTR_5_PRIME Syx18 UPSTREAM atl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	14566262	2L_14566262_SNP [dm3] 2L_14566262_SNP [dm6]	A	G	2.713e^-4	0.926	INTERGENIC
3L	950936	3L_950936_SNP [dm3] 3L_950936_SNP [dm6]	C	A	2.715e^-4	0.926	INTRON Glut1
2R	594721	2R_594721_SNP [dm3] 2R_4707216_SNP [dm6]	A	G	2.717e^-4	0.926	INTRON Nipped-B	transposable element FlyBase
2R	625892	2R_625892_SNP [dm3] 2R_4738387_SNP [dm6]	G	A	2.722e^-4	0.926	INTERGENIC	transposable element FlyBase
2R	20985435	2R_20985435_SNP [dm3] 2R_25097912_SNP [dm6]	C	T	2.725e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4005352	2L_4005352_SNP [dm3] 2L_4005352_SNP [dm6]	A	G	2.729e^-4	0.926	SYNONYMOUS_CODING CG15422 UPSTREAM CG15423 DOWNSTREAM CG34176
3R	12929172	3R_12929172_SNP [dm3] 3R_17103450_SNP [dm6]	G	T	2.735e^-4	0.926	INTRON cher
2L	14328315	2L_14328315_SNP [dm3] 2L_14328315_SNP [dm6]	G	A	2.737e^-4	0.926	UPSTREAM ms_2_34Fe DOWNSTREAM wb INTERGENIC
2R	6555258	2R_6555258_SNP [dm3] 2R_10667753_SNP [dm6]	A	G	2.741e^-4	0.926	INTERGENIC
2R	6555259	2R_6555259_SNP [dm3] 2R_10667754_SNP [dm6]	A	T	2.741e^-4	0.926	INTERGENIC
2R	8697599	2R_8697599_SNP [dm3] 2R_12810094_SNP [dm6]	C	G	2.741e^-4	0.926	INTERGENIC
3L	3548719	3L_3548719_SNP [dm3] 3L_3548719_SNP [dm6]	C	G	2.744e^-4	0.926	INTRON Eip63E
2L	17602387	2L_17602387_SNP [dm3] 2L_17602387_SNP [dm6]	C	G	2.747e^-4	0.926	SYNONYMOUS_CODING Sytalpha
X	12593355	X_12593355_SNP [dm3] X_12699322_SNP [dm6]	A	C	2.756e^-4	0.926	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	2.759e^-4	0.926	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
2R	11735896	2R_11735896_SNP [dm3] 2R_15848391_SNP [dm6]	T	A	2.768e^-4	0.926	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2R	20110095	2R_20110095_SNP [dm3] 2R_24222572_SNP [dm6]	C	G	2.775e^-4	0.926	INTRON CG30419
3L	10563298	3L_10563298_SNP [dm3] 3L_10570198_SNP [dm6]	A	G	2.787e^-4	0.926	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2L	11592039	2L_11592039_SNP [dm3] 2L_11592039_SNP [dm6]	T	G	2.792e^-4	0.926	UPSTREAM Acp33A INTRON kek2
3L	3724365	3L_3724365_SNP [dm3] 3L_3724365_SNP [dm6]	G	A	2.799e^-4	0.926	INTRON CG32264
X	12197892	X_12197892_SNP [dm3] X_12303859_SNP [dm6]	C	T	2.806e^-4	0.926	INTRON Ten-a
2R	9558592	2R_9558592_SNP [dm3] 2R_13671087_SNP [dm6]	A	C	2.807e^-4	0.926	NON_SYNONYMOUS_CODING CG18368 DOWNSTREAM CR45031 INTRON fas
X	6530203	X_6530203_SNP [dm3] X_6636170_SNP [dm6]	G	A	2.808e^-4	0.926	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
3R	21921735	3R_21921735_SNP [dm3] 3R_26096013_SNP [dm6]	C	T	2.823e^-4	0.926	INTRON dys	regulatory region REDfly_CRMs
3L	16052723	3L_16052723_SNP [dm3] 3L_16059623_SNP [dm6]	C	A	2.839e^-4	0.926	INTRON Mbs
X	17387293	X_17387293_SNP [dm3] X_17493260_SNP [dm6]	A	G	2.841e^-4	0.926	INTRON CG43658
3R	8379931	3R_8379931_SNP [dm3] 3R_12554209_SNP [dm6]	T	G	2.842e^-4	0.926	INTRON Octbeta2R
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	2.845e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	7208847	3L_7208847_SNP [dm3] 3L_7215747_SNP [dm6]	T	A	2.852e^-4	0.926	INTERGENIC
2L	15741607	2L_15741607_SNP [dm3] 2L_15741607_SNP [dm6]	G	A	2.878e^-4	0.926	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4031912	3R_4031912_SNP [dm3] 3R_8206190_SNP [dm6]	G	C	2.883e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26523884	3R_26523884_SNP [dm3] 3R_30698162_SNP [dm6]	G	T	2.885e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2711950	2L_2711950_SNP [dm3] 2L_2711950_SNP [dm6]	C	G	2.890e^-4	0.926	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16446658	2R_16446658_SNP [dm3] 2R_20559153_SNP [dm6]	G	A	2.891e^-4	0.926	UTR_3_PRIME lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17410829	3L_17410829_SNP [dm3] 3L_17417729_SNP [dm6]	C	G	2.895e^-4	0.926	INTRON blot	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3R	26665555	3R_26665555_SNP [dm3] 3R_30839833_SNP [dm6]	T	G	2.911e^-4	0.926	NON_SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
2L	4272884	2L_4272884_SNP [dm3] 2L_4272884_SNP [dm6]	C	T	2.917e^-4	0.926	INTERGENIC
3R	26523715	3R_26523715_SNP [dm3] 3R_30697993_SNP [dm6]	C	T	2.918e^-4	0.926	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18953837	X_18953837_DEL [dm3] X_19059804_DEL [dm6]	AAG	A	2.923e^-4	0.926	INTRON CG14190
3L	10088952	3L_10088952_SNP [dm3] 3L_10095852_SNP [dm6]	C	T	2.931e^-4	0.926	NON_SYNONYMOUS_CODING CG42825 INTRON dpr6
3R	6858993	3R_6858993_SNP [dm3] 3R_11033271_SNP [dm6]	C	G	2.932e^-4	0.926	INTRON CG34114
2L	6830528	2L_6830528_SNP [dm3] 2L_6830528_SNP [dm6]	T	G	2.934e^-4	0.926	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19551149	3R_19551149_SNP [dm3] 3R_23725427_SNP [dm6]	A	G	2.939e^-4	0.926	INTRON CG10365
3R	25920896	3R_25920896_SNP [dm3] 3R_30095174_SNP [dm6]	G	A	2.975e^-4	0.926	INTRON sima
2L	1633299	2L_1633299_SNP [dm3] 2L_1633299_SNP [dm6]	G	T	2.980e^-4	0.926	INTERGENIC
X	20950512	X_20950512_SNP [dm3] X_21079485_SNP [dm6]	A	C	2.996e^-4	0.926	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	689571	3L_689571_SNP [dm3] 3L_689571_SNP [dm6]	C	T	3.007e^-4	0.926	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	16967564	2L_16967564_SNP [dm3] 2L_16967564_SNP [dm6]	A	G	3.008e^-4	0.926	INTERGENIC
2R	11651157	2R_11651157_SNP [dm3] 2R_15763652_SNP [dm6]	C	T	3.008e^-4	0.926	SYNONYMOUS_CODING Zasp52
2R	18752919	2R_18752919_SNP [dm3] 2R_22865396_SNP [dm6]	C	A	3.011e^-4	0.926	INTERGENIC
X	5613245	X_5613245_SNP [dm3] X_5719212_SNP [dm6]	T	G	3.026e^-4	0.926	DOWNSTREAM CG32758 INTERGENIC
3L	15159851	3L_15159851_SNP [dm3] 3L_15166751_SNP [dm6]	C	T	3.028e^-4	0.926	INTERGENIC
3R	19189928	3R_19189928_SNP [dm3] 3R_23364206_SNP [dm6]	G	C	3.030e^-4	0.926	UPSTREAM CG4408 INTERGENIC
3R	4241091	3R_4241091_SNP [dm3] 3R_8415369_SNP [dm6]	G	C	3.034e^-4	0.926	INTRON CG45263
X	19118610	X_19118610_INS [dm3] X_19224577_INS [dm6]	G	GTG	3.039e^-4	0.926	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18871778	2L_18871778_SNP [dm3] 2L_18871778_SNP [dm6]	G	C	3.044e^-4	0.926	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8232472	2L_8232472_SNP [dm3] 2L_8232472_SNP [dm6]	G	A	3.045e^-4	0.926	INTRON Pvr
3L	1085788	3L_1085788_SNP [dm3] 3L_1085788_SNP [dm6]	G	A	3.053e^-4	0.926	INTRON bab1
3L	3833617	3L_3833617_SNP [dm3] 3L_3833617_SNP [dm6]	C	G	3.054e^-4	0.926	SYNONYMOUS_CODING enc
3R	4037483	3R_4037483_SNP [dm3] 3R_8211761_SNP [dm6]	A	T	3.057e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16138361	3L_16138361_SNP [dm3] 3L_16145261_SNP [dm6]	A	G	3.058e^-4	0.926	INTRON CG5151
2R	6555226	2R_6555226_SNP [dm3] 2R_10667721_SNP [dm6]	T	C	3.061e^-4	0.926	INTERGENIC
2R	19206077	2R_19206077_SNP [dm3] 2R_23318554_SNP [dm6]	T	A	3.062e^-4	0.926	SYNONYMOUS_CODING CG30412	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12328504	3L_12328504_SNP [dm3] 3L_12335404_SNP [dm6]	C	T	3.066e^-4	0.926	SYNONYMOUS_CODING CG32105
3R	25721854	3R_25721854_SNP [dm3] 3R_29896132_SNP [dm6]	T	C	3.072e^-4	0.926	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6495658	3L_6495658_SNP [dm3] 3L_6502558_SNP [dm6]	C	T	3.072e^-4	0.926	INTRON sfl
2R	6372270	2R_6372270_SNP [dm3] 2R_10484765_SNP [dm6]	A	G	3.072e^-4	0.926	UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	755506	3L_755506_SNP [dm3] 3L_755506_SNP [dm6]	A	G	3.078e^-4	0.926	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18148043	3L_18148043_SNP [dm3] 3L_18154943_SNP [dm6]	A	T	3.079e^-4	0.926	UTR_3_PRIME CG13699
X	12628680	X_12628680_INS [dm3] X_12734647_INS [dm6]	A	AGCAAAAAA	3.083e^-4	0.926	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20329734	2L_20329734_SNP [dm3] 2L_20329734_SNP [dm6]	T	G	3.084e^-4	0.926	INTRON spir
2R	4583280	2R_4583280_SNP [dm3] 2R_8695775_SNP [dm6]	A	C	3.104e^-4	0.926	UTR_5_PRIME CG8586 UPSTREAM CG8738 INTRON CG8586
3R	7227186	3R_7227186_SNP [dm3] 3R_11401464_SNP [dm6]	C	T	3.116e^-4	0.926	UTR_3_PRIME pros
X	10588055	X_10588055_SNP [dm3] X_10694022_SNP [dm6]	A	G	3.118e^-4	0.926	INTRON X11Lbeta
3L	20994212	3L_20994212_SNP [dm3] 3L_21001112_SNP [dm6]	T	C	3.119e^-4	0.926	NON_SYNONYMOUS_CODING skd	TF binding site mE1_TFBS_cad
3R	27783554	3R_27783554_INS [dm3] 3R_31957832_INS [dm6]	G	GGG	3.119e^-4	0.926	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17605562	2L_17605562_SNP [dm3] 2L_17605562_SNP [dm6]	G	A	3.127e^-4	0.926	DOWNSTREAM CR44412 INTERGENIC
3L	1098253	3L_1098253_SNP [dm3] 3L_1098253_SNP [dm6]	A	T	3.133e^-4	0.926	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11651124	2R_11651124_SNP [dm3] 2R_15763619_SNP [dm6]	C	T	3.137e^-4	0.926	INTRON Zasp52
2R	6403740	2R_6403740_SNP [dm3] 2R_10516235_SNP [dm6]	G	A	3.137e^-4	0.926	INTRON lola
2L	8425111	2L_8425111_SNP [dm3] 2L_8425111_SNP [dm6]	T	C	3.139e^-4	0.926	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19079077	3R_19079077_SNP [dm3] 3R_23253355_SNP [dm6]	C	T	3.141e^-4	0.926	SYNONYMOUS_CODING EloA
2R	6861817	2R_6861817_SNP [dm3] 2R_10974312_SNP [dm6]	A	C	3.148e^-4	0.926	INTERGENIC
X	16936859	X_16936859_SNP [dm3] X_17042826_SNP [dm6]	C	G	3.148e^-4	0.926	INTRON CG45002
3L	13904998	3L_13904998_SNP [dm3] 3L_13911898_SNP [dm6]	T	A	3.156e^-4	0.926	INTRON Rgl
2R	21126770	2R_21126770_SNP [dm3] 2R_25239247_SNP [dm6]	A	T	3.157e^-4	0.926	INTRON CG9380
3L	22699773	3L_22699773_SNP [dm3] 3L_22706673_SNP [dm6]	G	C	3.164e^-4	0.926	INTERGENIC
2L	3811557	2L_3811557_SNP [dm3] 2L_3811557_SNP [dm6]	A	G	3.165e^-4	0.926	DOWNSTREAM Reph INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25439124	3R_25439124_SNP [dm3] 3R_29613402_SNP [dm6]	G	A	3.167e^-4	0.926	INTRON alph
3L	5903416	3L_5903416_SNP [dm3] 3L_5910316_SNP [dm6]	A	T	3.173e^-4	0.926	DOWNSTREAM CG13288 INTRON CG13288
2R	6740078	2R_6740078_SNP [dm3] 2R_10852573_SNP [dm6]	A	G	3.179e^-4	0.926	UPSTREAM CR45136 INTRON CG30015
3L	7821013	3L_7821013_SNP [dm3] 3L_7827913_SNP [dm6]	C	T	3.190e^-4	0.926	UTR_5_PRIME Pdp1 INTRON Pdp1
X	3217812	X_3217812_DEL [dm3] X_3323779_DEL [dm6]	CAATA	C	3.199e^-4	0.926	INTRON CR44886 & 1 other
X	13332237	X_13332237_SNP [dm3] X_13438204_SNP [dm6]	T	A	3.200e^-4	0.926	INTERGENIC
3L	19823326	3L_19823326_SNP [dm3] 3L_19830226_SNP [dm6]	G	A	3.203e^-4	0.926	UTR_3_PRIME Deaf1 DOWNSTREAM Deaf1 & 1 other
3R	20451400	3R_20451400_SNP [dm3] 3R_24625678_SNP [dm6]	A	G	3.204e^-4	0.926	START_GAINED atl UTR_5_PRIME atl UPSTREAM Syx18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	481731	3L_481731_SNP [dm3] 3L_481731_SNP [dm6]	C	T	3.210e^-4	0.926	INTRON klar
3L	1409673	3L_1409673_SNP [dm3] 3L_1409673_SNP [dm6]	C	G	3.214e^-4	0.926	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7987814	3L_7987814_SNP [dm3] 3L_7994714_SNP [dm6]	T	A	3.218e^-4	0.926	INTRON nmo
2R	19111076	2R_19111076_SNP [dm3] 2R_23223553_SNP [dm6]	T	G	3.221e^-4	0.926	INTERGENIC
2R	12193347	2R_12193347_INS [dm3] 2R_16305842_INS [dm6]	A	ACTTTTCGTT	3.234e^-4	0.926	EXON CR45232
3L	14481388	3L_14481388_SNP [dm3] 3L_14488288_SNP [dm6]	A	C	3.240e^-4	0.926	INTRON bbg	TF binding site mE1_TFBS_cad
2L	11327781	2L_11327781_SNP [dm3] 2L_11327781_SNP [dm6]	C	A	3.242e^-4	0.926	INTERGENIC
3L	18853349	3L_18853349_SNP [dm3] 3L_18860249_SNP [dm6]	C	G	3.248e^-4	0.926	UPSTREAM mir-315 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21748776	3L_21748776_SNP [dm3] 3L_21755676_SNP [dm6]	G	T	3.249e^-4	0.926	INTRON Syn1
X	17176447	X_17176447_SNP [dm3] X_17282414_SNP [dm6]	C	A	3.256e^-4	0.926	UPSTREAM CG5445 INTRON CG8664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18402510	X_18402510_SNP [dm3] X_18508477_SNP [dm6]	A	C	3.260e^-4	0.926	SYNONYMOUS_CODING Ggt-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	21748708	3L_21748708_DEL [dm3] 3L_21755608_DEL [dm6]	TCACGCGTTCCT...	T	3.271e^-4	0.926	INTRON Syn1
3L	10965318	3L_10965318_SNP [dm3] 3L_10972218_SNP [dm6]	T	G	3.275e^-4	0.926	UPSTREAM CG14147 INTERGENIC
X	6530243	X_6530243_SNP [dm3] X_6636210_SNP [dm6]	G	T	3.285e^-4	0.926	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
2R	12450869	2R_12450869_SNP [dm3] 2R_16563364_SNP [dm6]	C	G	3.291e^-4	0.926	INTRON DAT
3L	3135756	3L_3135756_SNP [dm3] 3L_3135756_SNP [dm6]	T	C	3.306e^-4	0.926	INTRON CG11537
3R	6068420	3R_6068420_SNP [dm3] 3R_10242698_SNP [dm6]	C	G	3.306e^-4	0.926	NON_SYNONYMOUS_CODING CG42795
2L	3540450	2L_3540450_SNP [dm3] 2L_3540450_SNP [dm6]	G	A	3.313e^-4	0.926	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	7632821	2R_7632821_SNP [dm3] 2R_11745316_SNP [dm6]	C	A	3.318e^-4	0.926	INTERGENIC
X	17030322	X_17030322_SNP [dm3] X_17136289_SNP [dm6]	C	T	3.321e^-4	0.926	UTR_3_PRIME mei-218 DOWNSTREAM mei-218 & 2 others
2R	16179077	2R_16179077_SNP [dm3] 2R_20291572_SNP [dm6]	T	C	3.332e^-4	0.926	UPSTREAM CR44638 INTRON Cpr56F
2R	10028999	2R_10028999_SNP [dm3] 2R_14141494_SNP [dm6]	A	G	3.334e^-4	0.926	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	15511219	2R_15511219_SNP [dm3] 2R_19623714_SNP [dm6]	C	A	3.335e^-4	0.926	INTRON sm
3L	4947246	3L_4947246_SNP [dm3] 3L_4947246_SNP [dm6]	T	C	3.348e^-4	0.926	INTRON Con
2R	4690579	2R_4690579_SNP [dm3] 2R_8803074_SNP [dm6]	C	T	3.353e^-4	0.926	INTRON sns	TF binding site BDTNP1_TFBS_twi
X	19677475	X_19677475_SNP [dm3] X_19783442_SNP [dm6]	G	T	3.360e^-4	0.926	UTR_5_PRIME vfl UPSTREAM vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1281183	2L_1281183_SNP [dm3] 2L_1281183_SNP [dm6]	C	A	3.363e^-4	0.926	INTRON robo3
3R	22855114	3R_22855114_SNP [dm3] 3R_27029392_SNP [dm6]	C	T	3.374e^-4	0.926	INTRON RYa-R
3L	1299410	3L_1299410_SNP [dm3] 3L_1299410_SNP [dm6]	T	C	3.375e^-4	0.926	SYNONYMOUS_CODING scf DOWNSTREAM Rabex-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12447058	2L_12447058_SNP [dm3] 2L_12447058_SNP [dm6]	C	A	3.376e^-4	0.926	NON_SYNONYMOUS_CODING CG5421
3L	1011177	3L_1011177_SNP [dm3] 3L_1011177_SNP [dm6]	A	G	3.376e^-4	0.926	INTRON trio
3R	20855684	3R_20855684_SNP [dm3] 3R_25029962_SNP [dm6]	A	G	3.377e^-4	0.926	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
2L	9172835	2L_9172835_SNP [dm3] 2L_9172835_SNP [dm6]	T	C	3.388e^-4	0.926	INTRON tai
2R	6666815	2R_6666815_INS [dm3] 2R_10779310_INS [dm6]	A	AA	3.390e^-4	0.926	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	19077738	2R_19077738_SNP [dm3] 2R_23190215_SNP [dm6]	T	A	3.397e^-4	0.926	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	8965839	3R_8965839_SNP [dm3] 3R_13140117_SNP [dm6]	C	T	3.399e^-4	0.926	INTRON timeout & 2 others
2L	9825565	2L_9825565_SNP [dm3] 2L_9825565_SNP [dm6]	A	G	3.403e^-4	0.926	INTRON nAChRalpha6
3L	3837822	3L_3837822_SNP [dm3] 3L_3837822_SNP [dm6]	T	G	3.406e^-4	0.926	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2185442	2L_2185442_SNP [dm3] 2L_2185442_SNP [dm6]	T	G	3.409e^-4	0.926	EXON CR43751	regulatory region REDfly_CRMs
2R	10476227	2R_10476227_SNP [dm3] 2R_14588722_SNP [dm6]	A	G	3.409e^-4	0.926	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
X	11289686	X_11289686_SNP [dm3] X_11395653_SNP [dm6]	A	C	3.414e^-4	0.926	SYNONYMOUS_CODING dlg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9276949	3L_9276949_SNP [dm3] 3L_9283849_SNP [dm6]	C	G	3.419e^-4	0.926	INTRON GluRIB
3L	10289423	3L_10289423_SNP [dm3] 3L_10296323_SNP [dm6]	G	T	3.422e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17279358	X_17279358_SNP [dm3] X_17385325_SNP [dm6]	G	T	3.433e^-4	0.926	INTERGENIC
2L	19973393	2L_19973393_SNP [dm3] 2L_19973393_SNP [dm6]	A	C	3.439e^-4	0.926	INTRON CG43861
3R	923911	3R_923911_SNP [dm3] 3R_5098189_SNP [dm6]	T	C	3.442e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18714993	3R_18714993_SNP [dm3] 3R_22889271_SNP [dm6]	T	C	3.444e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25851526	3R_25851526_INS [dm3] 3R_30025804_INS [dm6]	CT	TGTTTCATGTTCATGTTTC...	3.446e^-4	0.926	INTRON Axn
3L	13366910	3L_13366910_SNP [dm3] 3L_13373810_SNP [dm6]	C	T	3.451e^-4	0.926	INTERGENIC
2L	13388246	2L_13388246_SNP [dm3] 2L_13388246_SNP [dm6]	C	A	3.458e^-4	0.926	SYNONYMOUS_CODING CG7099 UPSTREAM CG9293
2L	3536893	2L_3536893_SNP [dm3] 2L_3536893_SNP [dm6]	G	A	3.470e^-4	0.926	UPSTREAM CR44308 INTERGENIC
3L	5427927	3L_5427927_INS [dm3] 3L_5434827_INS [dm6]	G	GA	3.474e^-4	0.926	INTRON CG34391
2L	16967536	2L_16967536_SNP [dm3] 2L_16967536_SNP [dm6]	T	G	3.475e^-4	0.926	INTERGENIC
2L	12698596	2L_12698596_SNP [dm3] 2L_12698596_SNP [dm6]	A	C	3.482e^-4	0.926	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20053731	2R_20053731_SNP [dm3] 2R_24166208_SNP [dm6]	A	T	3.486e^-4	0.926	UPSTREAM CG3328 INTRON CG3328
X	22203732	X_22203732_SNP [dm3] X_22801896_SNP [dm6]	T	C	3.487e^-4	0.926	INTERGENIC
X	8182184	X_8182184_SNP [dm3] X_8288151_SNP [dm6]	A	G	3.490e^-4	0.926	INTRON nAChRalpha3
2R	15587678	2R_15587678_SNP [dm3] 2R_19700173_SNP [dm6]	T	C	3.490e^-4	0.926	SYNONYMOUS_STOP Obp56c UPSTREAM Obp56b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	16895061	X_16895061_DEL [dm3] X_17001028_DEL [dm6]	TTG	T	3.490e^-4	0.926	INTRON CG45002
2R	7804343	2R_7804343_SNP [dm3] 2R_11916838_SNP [dm6]	T	C	3.495e^-4	0.926	INTERGENIC
3L	10965818	3L_10965818_SNP [dm3] 3L_10972718_SNP [dm6]	T	C	3.495e^-4	0.926	UTR_5_PRIME CG14147
3R	26665644	3R_26665644_SNP [dm3] 3R_30839922_SNP [dm6]	T	C	3.510e^-4	0.926	NON_SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
2L	8304919	2L_8304919_SNP [dm3] 2L_8304919_SNP [dm6]	C	T	3.518e^-4	0.926	SYNONYMOUS_CODING Scgalpha UPSTREAM CG7840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	517196	2L_517196_INS [dm3] 2L_517196_INS [dm6]	A	ACACACACACCAGCAAGCA...	3.519e^-4	0.926	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	1397594	3L_1397594_SNP [dm3] 3L_1397594_SNP [dm6]	A	T	3.525e^-4	0.926	UPSTREAM tRNA:E4:62Aa & 4 others INTRON Ptp61F
2L	16381934	2L_16381934_SNP [dm3] 2L_16381934_SNP [dm6]	G	A	3.526e^-4	0.926	INTERGENIC
3L	10798277	3L_10798277_INS [dm3] 3L_10805177_INS [dm6]	T	TA	3.527e^-4	0.926	DOWNSTREAM CR44347 EXON CR44347
2R	12193341	2R_12193341_INS [dm3] 2R_16305836_INS [dm6]	T	TATACTAA	3.530e^-4	0.926	EXON CR45232
2R	8123945	2R_8123945_SNP [dm3] 2R_12236440_SNP [dm6]	A	G	3.531e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12903417	X_12903417_SNP [dm3] X_13009384_SNP [dm6]	C	T	3.540e^-4	0.926	INTRON rad
X	17287033	X_17287033_SNP [dm3] X_17393000_SNP [dm6]	C	T	3.543e^-4	0.926	INTERGENIC
2L	19083502	2L_19083502_SNP [dm3] 2L_19083502_SNP [dm6]	G	T	3.548e^-4	0.926	UPSTREAM Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10165721	2R_10165721_SNP [dm3] 2R_14278216_SNP [dm6]	T	C	3.550e^-4	0.926	UTR_5_PRIME Ih
2L	1671683	2L_1671683_DEL [dm3] 2L_1671683_DEL [dm6]	TGT	T	3.551e^-4	0.926	INTRON chinmo
2L	2864474	2L_2864474_SNP [dm3] 2L_2864474_SNP [dm6]	A	G	3.554e^-4	0.926	INTRON CG2991
2R	21070410	2R_21070410_SNP [dm3] 2R_25182887_SNP [dm6]	A	G	3.558e^-4	0.926	DOWNSTREAM CG9380 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6339769	3L_6339769_SNP [dm3] 3L_6346669_SNP [dm6]	T	C	3.561e^-4	0.926	INTRON CG13300
3L	3475656	3L_3475656_SNP [dm3] 3L_3475656_SNP [dm6]	A	G	3.568e^-4	0.926	INTRON CG42324
2R	631165	2R_631165_SNP [dm3] 2R_4743660_SNP [dm6]	A	C	3.568e^-4	0.926	UPSTREAM conu INTERGENIC
3L	3837804	3L_3837804_SNP [dm3] 3L_3837804_SNP [dm6]	A	C	3.570e^-4	0.926	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14043962	3R_14043962_SNP [dm3] 3R_18218240_SNP [dm6]	C	T	3.571e^-4	0.926	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	20210035	3R_20210035_SNP [dm3] 3R_24384313_SNP [dm6]	G	T	3.580e^-4	0.926	INTRON CG17780
3R	14596605	3R_14596605_SNP [dm3] 3R_18770883_SNP [dm6]	G	T	3.591e^-4	0.926	INTRON CG7720
2L	3811543	2L_3811543_SNP [dm3] 2L_3811543_SNP [dm6]	G	C	3.592e^-4	0.926	DOWNSTREAM Reph INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18457833	X_18457833_INS [dm3] X_18563800_INS [dm6]	A	AG	3.594e^-4	0.926	INTRON Bx
2L	7712563	2L_7712563_SNP [dm3] 2L_7712563_SNP [dm6]	C	T	3.619e^-4	0.926	SYNONYMOUS_CODING Ntl DOWNSTREAM tRNA:Y1:28C	TF binding site mE1_TFBS_HSA
2R	6740115	2R_6740115_SNP [dm3] 2R_10852610_SNP [dm6]	T	G	3.628e^-4	0.926	UPSTREAM CR45136 INTRON CG30015
2R	8108330	2R_8108330_DEL [dm3] 2R_12220825_DEL [dm6]	TATAT	T	3.631e^-4	0.926	INTERGENIC
2L	16636453	2L_16636453_SNP [dm3] 2L_16636453_SNP [dm6]	A	C	3.632e^-4	0.926	INTRON CG42389
2R	6697021	2R_6697021_SNP [dm3] 2R_10809516_SNP [dm6]	C	T	3.633e^-4	0.926	UTR_5_PRIME CG12935 UPSTREAM CG12935 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	12876152	X_12876152_SNP [dm3] X_12982119_SNP [dm6]	T	G	3.640e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	619835	2R_619835_SNP [dm3] 2R_4732330_SNP [dm6]	G	A	3.642e^-4	0.926	DOWNSTREAM CR45471 EXON CR41440
2L	21806580	2L_21806580_SNP [dm3] 2L_21806580_SNP [dm6]	T	C	3.644e^-4	0.926	INTERGENIC
2L	18908704	2L_18908704_SNP [dm3] 2L_18908704_SNP [dm6]	T	A	3.646e^-4	0.926	INTERGENIC
2R	20999103	2R_20999103_SNP [dm3] 2R_25111580_SNP [dm6]	G	A	3.646e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23934480	3R_23934480_SNP [dm3] 3R_28108758_SNP [dm6]	A	G	3.662e^-4	0.926	INTERGENIC
3R	26893830	3R_26893830_SNP [dm3] 3R_31068108_SNP [dm6]	C	T	3.679e^-4	0.926	INTRON Sox100B
2R	6420575	2R_6420575_DEL [dm3] 2R_10533070_DEL [dm6]	TT	T	3.681e^-4	0.926	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	23933497	3R_23933497_SNP [dm3] 3R_28107775_SNP [dm6]	T	C	3.682e^-4	0.926	INTERGENIC
2R	21127981	2R_21127981_SNP [dm3] 2R_25240458_SNP [dm6]	T	A	3.689e^-4	0.926	INTRON CG9380
3R	16714822	3R_16714822_SNP [dm3] 3R_20889100_SNP [dm6]	A	T	3.696e^-4	0.926	INTERGENIC
2R	16241491	2R_16241491_SNP [dm3] 2R_20353986_SNP [dm6]	A	T	3.697e^-4	0.926	DOWNSTREAM CG11192 INTERGENIC
3L	3829758	3L_3829758_SNP [dm3] 3L_3829758_SNP [dm6]	G	A	3.700e^-4	0.926	NON_SYNONYMOUS_CODING enc INTRON enc
2R	625893	2R_625893_SNP [dm3] 2R_4738388_SNP [dm6]	T	A	3.705e^-4	0.926	INTERGENIC	transposable element FlyBase
X	16566220	X_16566220_SNP [dm3] X_16672187_SNP [dm6]	G	A	3.712e^-4	0.926	INTRON CG13012
2R	8120816	2R_8120816_SNP [dm3] 2R_12233311_SNP [dm6]	G	A	3.713e^-4	0.926	DOWNSTREAM CR44313 INTERGENIC
X	18369693	X_18369693_SNP [dm3] X_18475660_SNP [dm6]	C	A	3.723e^-4	0.926	INTRON CG32547
3R	18692360	3R_18692360_SNP [dm3] 3R_22866638_SNP [dm6]	T	C	3.723e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6300454	2L_6300454_DEL [dm3] 2L_6300454_DEL [dm6]	TGAGCCCAATT...	T	3.726e^-4	0.926	INTRON Ddr
3L	18032672	3L_18032672_SNP [dm3] 3L_18039572_SNP [dm6]	T	G	3.736e^-4	0.926	UPSTREAM CG32192 INTRON Eip75B
2L	6981744	2L_6981744_SNP [dm3] 2L_6981744_SNP [dm6]	A	G	3.739e^-4	0.926	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19083503	2L_19083503_SNP [dm3] 2L_19083503_SNP [dm6]	T	G	3.740e^-4	0.926	UPSTREAM Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	628373	2R_628373_SNP [dm3] 2R_4740868_SNP [dm6]	G	T	3.744e^-4	0.926	INTERGENIC	transposable element FlyBase
X	10110235	X_10110235_SNP [dm3] X_10216202_SNP [dm6]	A	G	3.746e^-4	0.926	UTR_3_PRIME l_1_G0230 INTRON CG2962
2R	1183751	2R_1183751_SNP [dm3] 2R_5296246_SNP [dm6]	A	T	3.751e^-4	0.926	DOWNSTREAM d4 INTERGENIC
3R	26582085	3R_26582085_SNP [dm3] 3R_30756363_SNP [dm6]	T	A	3.752e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	15102053	X_15102053_SNP [dm3] X_15208020_SNP [dm6]	T	A	3.752e^-4	0.926	INTERGENIC
2R	20052629	2R_20052629_SNP [dm3] 2R_24165106_SNP [dm6]	G	A	3.754e^-4	0.926	INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	14065507	3R_14065507_SNP [dm3] 3R_18239785_SNP [dm6]	T	C	3.758e^-4	0.926	UTR_3_PRIME CG7156 DOWNSTREAM repo
2R	18516499	2R_18516499_SNP [dm3] 2R_22628994_SNP [dm6]	C	A	3.764e^-4	0.926	INTRON CG33143
3R	23646407	3R_23646407_SNP [dm3] 3R_27820685_SNP [dm6]	G	C	3.767e^-4	0.926	INTRON CG34353
3L	13905311	3L_13905311_SNP [dm3] 3L_13912211_SNP [dm6]	T	C	3.769e^-4	0.926	INTRON Rgl
2R	1183750	2R_1183750_SNP [dm3] 2R_5296245_SNP [dm6]	A	T	3.770e^-4	0.926	DOWNSTREAM d4 INTERGENIC
3R	7795528	3R_7795528_SNP [dm3] 3R_11969806_SNP [dm6]	A	T	3.770e^-4	0.926	INTRON GC1
3R	14924949	3R_14924949_SNP [dm3] 3R_19099227_SNP [dm6]	A	G	3.771e^-4	0.926	INTRON CG6040	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4806313	2L_4806313_SNP [dm3] 2L_4806313_SNP [dm6]	T	A	3.774e^-4	0.926	INTERGENIC
2L	4806322	2L_4806322_MNP [dm3] 2L_4806322_MNP [dm6]	ATA	CAG	3.774e^-4	0.926	INTERGENIC
2L	12698592	2L_12698592_SNP [dm3] 2L_12698592_SNP [dm6]	C	T	3.775e^-4	0.926	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13825785	2L_13825785_SNP [dm3] 2L_13825785_SNP [dm6]	T	C	3.777e^-4	0.926	NON_SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2350049	3L_2350049_SNP [dm3] 3L_2350049_SNP [dm6]	G	T	3.781e^-4	0.926	INTERGENIC
X	16649410	X_16649410_SNP [dm3] X_16755377_SNP [dm6]	A	G	3.787e^-4	0.926	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14188048	2R_14188048_SNP [dm3] 2R_18300543_SNP [dm6]	C	T	3.788e^-4	0.926	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20782522	2R_20782522_SNP [dm3] 2R_24894999_SNP [dm6]	T	G	3.789e^-4	0.926	INTRON NaCP60E
X	20723145	X_20723145_SNP [dm3] X_20852118_SNP [dm6]	C	G	3.789e^-4	0.926	INTRON shakB
2L	16381922	2L_16381922_SNP [dm3] 2L_16381922_SNP [dm6]	G	C	3.794e^-4	0.926	INTERGENIC
3R	25921443	3R_25921443_SNP [dm3] 3R_30095721_SNP [dm6]	C	T	3.797e^-4	0.926	INTRON sima
3L	9084989	3L_9084989_SNP [dm3] 3L_9091889_SNP [dm6]	G	A	3.804e^-4	0.926	SYNONYMOUS_CODING Tequila
3R	23934202	3R_23934202_SNP [dm3] 3R_28108480_SNP [dm6]	G	A	3.808e^-4	0.926	INTERGENIC
2L	908421	2L_908421_INS [dm3] 2L_908421_INS [dm6]	T	TGTCATATCATGATATCA...	3.824e^-4	0.926	INTERGENIC
3L	22106474	3L_22106474_SNP [dm3] 3L_22113374_SNP [dm6]	C	G	3.831e^-4	0.926	INTERGENIC
3L	8804636	3L_8804636_SNP [dm3] 3L_8811536_SNP [dm6]	C	T	3.832e^-4	0.926	DOWNSTREAM CG13309 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15419554	X_15419554_SNP [dm3] X_15525521_SNP [dm6]	G	T	3.841e^-4	0.926	INTRON Ac13E
3L	1441191	3L_1441191_SNP [dm3] 3L_1441191_SNP [dm6]	A	G	3.843e^-4	0.926	INTRON Ptp61F
2L	9367396	2L_9367396_SNP [dm3] 2L_9367396_SNP [dm6]	G	T	3.848e^-4	0.926	UPSTREAM CG34181 INTERGENIC
2R	8295576	2R_8295576_SNP [dm3] 2R_12408071_SNP [dm6]	T	A	3.849e^-4	0.926	UPSTREAM CG30050 INTRON Cpr49Ag
3R	14085313	3R_14085313_SNP [dm3] 3R_18259591_SNP [dm6]	C	T	3.856e^-4	0.926	INTERGENIC
3R	22878822	3R_22878822_SNP [dm3] 3R_27053100_SNP [dm6]	G	A	3.860e^-4	0.926	INTRON RYa-R
2L	17602336	2L_17602336_SNP [dm3] 2L_17602336_SNP [dm6]	C	A	3.871e^-4	0.926	SYNONYMOUS_CODING Sytalpha
3R	15410161	3R_15410161_SNP [dm3] 3R_19584439_SNP [dm6]	A	T	3.871e^-4	0.926	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2R	11967483	2R_11967483_INS [dm3] 2R_16079978_INS [dm6]	T	TT	3.874e^-4	0.926	INTERGENIC
3L	12608893	3L_12608893_DEL [dm3] 3L_12615793_DEL [dm6]	AAATTTGGTCAAAACGTTAC...	A	3.885e^-4	0.926	INTRON caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8024865	3L_8024865_SNP [dm3] 3L_8031765_SNP [dm6]	A	T	3.885e^-4	0.926	INTRON nmo
2L	3542542	2L_3542542_SNP [dm3] 2L_3542542_SNP [dm6]	G	T	3.895e^-4	0.926	INTRON drm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4113371	3L_4113371_SNP [dm3] 3L_4113371_SNP [dm6]	G	A	3.908e^-4	0.926	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5133674	3L_5133674_SNP [dm3] 3L_5140574_SNP [dm6]	A	G	3.928e^-4	0.926	SYNONYMOUS_CODING CG10672 DOWNSTREAM CHMP2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10289893	3L_10289893_SNP [dm3] 3L_10296793_SNP [dm6]	T	A	3.935e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27731468	3R_27731468_SNP [dm3] 3R_31905746_SNP [dm6]	C	T	3.939e^-4	0.926	INTRON heph
2L	6817142	2L_6817142_SNP [dm3] 2L_6817142_SNP [dm6]	T	C	3.943e^-4	0.926	INTERGENIC
2R	10482506	2R_10482506_SNP [dm3] 2R_14595001_SNP [dm6]	T	C	3.952e^-4	0.926	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
2L	16799089	2L_16799089_SNP [dm3] 2L_16799089_SNP [dm6]	C	T	3.953e^-4	0.926	UTR_5_PRIME Ugt36Bc UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb
2L	4303641	2L_4303641_SNP [dm3] 2L_4303641_SNP [dm6]	T	A	3.954e^-4	0.926	INTRON tutl
3R	10393644	3R_10393644_SNP [dm3] 3R_14567922_SNP [dm6]	C	T	3.962e^-4	0.926	UTR_3_PRIME CG8066 UPSTREAM CG31313 DOWNSTREAM CG8066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	19626655	3R_19626655_SNP [dm3] 3R_23800933_SNP [dm6]	C	T	3.963e^-4	0.926	UTR_3_PRIME mbc DOWNSTREAM CG33111	TF binding site mE1_TFBS_HSA
3L	7858872	3L_7858872_SNP [dm3] 3L_7865772_SNP [dm6]	A	G	3.968e^-4	0.926	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	23365928	3R_23365928_SNP [dm3] 3R_27540206_SNP [dm6]	G	A	3.974e^-4	0.926	INTERGENIC
3L	15889641	3L_15889641_SNP [dm3] 3L_15896541_SNP [dm6]	G	A	3.980e^-4	0.926	INTRON pHCl
3R	23308799	3R_23308799_SNP [dm3] 3R_27483077_SNP [dm6]	C	T	3.984e^-4	0.926	DOWNSTREAM Cyp6a18 INTERGENIC
2L	5101806	2L_5101806_SNP [dm3] 2L_5101806_SNP [dm6]	A	G	3.994e^-4	0.926	INTRON Msp300
2L	663645	2L_663645_SNP [dm3] 2L_663645_SNP [dm6]	G	T	3.999e^-4	0.926	INTRON ds
3L	3834538	3L_3834538_SNP [dm3] 3L_3834538_SNP [dm6]	T	C	4.001e^-4	0.926	SYNONYMOUS_CODING enc INTRON enc
2R	20777769	2R_20777769_SNP [dm3] 2R_24890246_SNP [dm6]	C	T	4.017e^-4	0.926	SYNONYMOUS_CODING Ance-5
3L	11519616	3L_11519616_SNP [dm3] 3L_11526516_SNP [dm6]	C	A	4.030e^-4	0.926	INTRON Mob2
3L	8520587	3L_8520587_SNP [dm3] 3L_8527487_SNP [dm6]	G	C	4.031e^-4	0.926	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17132781	X_17132781_SNP [dm3] X_17238748_SNP [dm6]	T	A	4.036e^-4	0.926	INTRON f
3L	3836970	3L_3836970_SNP [dm3] 3L_3836970_SNP [dm6]	T	A	4.039e^-4	0.926	INTRON enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	869258	3L_869258_SNP [dm3] 3L_869258_SNP [dm6]	G	T	4.049e^-4	0.926	NON_SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9037591	3R_9037591_SNP [dm3] 3R_13211869_SNP [dm6]	A	G	4.064e^-4	0.926	INTRON CG8483
2L	14693167	2L_14693167_SNP [dm3] 2L_14693167_SNP [dm6]	G	A	4.070e^-4	0.926	INTERGENIC
3R	11992554	3R_11992554_SNP [dm3] 3R_16166832_SNP [dm6]	C	T	4.086e^-4	0.926	NON_SYNONYMOUS_CODING CG6006	TF binding site mE1_TFBS_chinmo
2L	10273280	2L_10273280_SNP [dm3] 2L_10273280_SNP [dm6]	C	T	4.095e^-4	0.926	SYNONYMOUS_CODING Utx UPSTREAM trk
3L	13284493	3L_13284493_SNP [dm3] 3L_13291393_SNP [dm6]	T	C	4.102e^-4	0.926	EXON CR43912
3R	18095624	3R_18095624_SNP [dm3] 3R_22269902_SNP [dm6]	C	T	4.104e^-4	0.926	INTRON SKIP
2L	7633571	2L_7633571_SNP [dm3] 2L_7633571_SNP [dm6]	A	G	4.108e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4022277	2L_4022277_SNP [dm3] 2L_4022277_SNP [dm6]	G	A	4.124e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7820285	3L_7820285_SNP [dm3] 3L_7827185_SNP [dm6]	A	G	4.130e^-4	0.926	UTR_5_PRIME Pdp1 INTRON Pdp1
2R	14188035	2R_14188035_SNP [dm3] 2R_18300530_SNP [dm6]	A	G	4.133e^-4	0.926	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10825433	2R_10825433_SNP [dm3] 2R_14937928_SNP [dm6]	G	A	4.133e^-4	0.926	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	4.140e^-4	0.926	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
X	16051170	X_16051170_SNP [dm3] X_16157137_SNP [dm6]	C	T	4.143e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19112778	2R_19112778_SNP [dm3] 2R_23225255_SNP [dm6]	T	A	4.148e^-4	0.926	INTERGENIC
3R	15281389	3R_15281389_SNP [dm3] 3R_19455667_SNP [dm6]	G	C	4.150e^-4	0.926	INTRON CG31221
X	19357886	X_19357886_SNP [dm3] X_19463853_SNP [dm6]	G	A	4.154e^-4	0.926	INTRON kek5
3R	14043939	3R_14043939_SNP [dm3] 3R_18218217_SNP [dm6]	T	G	4.155e^-4	0.926	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	14043942	3R_14043942_SNP [dm3] 3R_18218220_SNP [dm6]	G	C	4.155e^-4	0.926	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2R	20110093	2R_20110093_SNP [dm3] 2R_24222570_SNP [dm6]	G	T	4.162e^-4	0.926	INTRON CG30419
2R	18338769	2R_18338769_SNP [dm3] 2R_22451264_SNP [dm6]	G	T	4.172e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6740591	2R_6740591_SNP [dm3] 2R_10853086_SNP [dm6]	C	T	4.173e^-4	0.926	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	1832186	2L_1832186_SNP [dm3] 2L_1832186_SNP [dm6]	T	G	4.174e^-4	0.926	NON_SYNONYMOUS_CODING c-cup UPSTREAM mir-2280
2L	6264383	2L_6264383_SNP [dm3] 2L_6264383_SNP [dm6]	T	A	4.178e^-4	0.926	NON_SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_sens
2R	4549647	2R_4549647_SNP [dm3] 2R_8662142_SNP [dm6]	T	C	4.178e^-4	0.926	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10007712	3L_10007712_SNP [dm3] 3L_10014612_SNP [dm6]	T	A	4.192e^-4	0.926	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	4545325	2R_4545325_SNP [dm3] 2R_8657820_SNP [dm6]	G	C	4.193e^-4	0.926	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	2314388	2L_2314388_SNP [dm3] 2L_2314388_SNP [dm6]	A	T	4.197e^-4	0.926	INTRON CG9967 & 1 other
X	12903333	X_12903333_SNP [dm3] X_13009300_SNP [dm6]	T	C	4.199e^-4	0.926	INTRON rad
3R	27788965	3R_27788965_SNP [dm3] 3R_31963243_SNP [dm6]	C	G	4.201e^-4	0.926	INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22204202	X_22204202_SNP [dm3] X_22802366_SNP [dm6]	C	T	4.203e^-4	0.926	INTERGENIC
2R	639457	2R_639457_SNP [dm3] 2R_4751952_SNP [dm6]	G	T	4.205e^-4	0.926	INTRON conu	transposable element FlyBase
3L	3836969	3L_3836969_SNP [dm3] 3L_3836969_SNP [dm6]	C	T	4.215e^-4	0.926	INTRON enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	18069222	X_18069222_SNP [dm3] X_18175189_SNP [dm6]	T	G	4.217e^-4	0.926	DOWNSTREAM Frq1 INTERGENIC
3L	16530681	3L_16530681_SNP [dm3] 3L_16537581_SNP [dm6]	G	T	4.218e^-4	0.926	INTRON CG43373
2R	9810162	2R_9810162_INS [dm3] 2R_13922657_INS [dm6]	A	ACTTGCATATCA...	4.220e^-4	0.926	INTRON shot
3L	8392295	3L_8392295_SNP [dm3] 3L_8399195_SNP [dm6]	C	A	4.229e^-4	0.926	INTRON CG7120
2L	18630849	2L_18630849_SNP [dm3] 2L_18630849_SNP [dm6]	T	A	4.232e^-4	0.926	INTRON MESR3
3R	23934440	3R_23934440_SNP [dm3] 3R_28108718_SNP [dm6]	A	G	4.247e^-4	0.926	INTERGENIC
2L	1633335	2L_1633335_SNP [dm3] 2L_1633335_SNP [dm6]	T	A	4.248e^-4	0.926	INTERGENIC
3R	20855872	3R_20855872_SNP [dm3] 3R_25030150_SNP [dm6]	C	A	4.258e^-4	0.926	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
3L	4652891	3L_4652891_SNP [dm3] 3L_4652891_SNP [dm6]	G	A	4.264e^-4	0.926	INTRON axo
2L	19017514	2L_19017514_SNP [dm3] 2L_19017514_SNP [dm6]	C	A	4.265e^-4	0.926	INTERGENIC
2L	13726648	2L_13726648_SNP [dm3] 2L_13726648_SNP [dm6]	C	T	4.268e^-4	0.926	INTERGENIC
3R	26037683	3R_26037683_SNP [dm3] 3R_30211961_SNP [dm6]	C	G	4.273e^-4	0.926	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
3L	3827519	3L_3827519_SNP [dm3] 3L_3827519_SNP [dm6]	T	C	4.274e^-4	0.926	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11735874	2R_11735874_SNP [dm3] 2R_15848369_SNP [dm6]	C	A	4.281e^-4	0.926	UPSTREAM tun INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2R	14667523	2R_14667523_SNP [dm3] 2R_18780018_SNP [dm6]	G	A	4.288e^-4	0.926	INTERGENIC
2R	6681139	2R_6681139_SNP [dm3] 2R_10793634_SNP [dm6]	G	A	4.288e^-4	0.926	DOWNSTREAM mthl13 INTRON CG33144
2L	15741544	2L_15741544_SNP [dm3] 2L_15741544_SNP [dm6]	C	A	4.298e^-4	0.926	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23934493	3R_23934493_SNP [dm3] 3R_28108771_SNP [dm6]	T	A	4.301e^-4	0.926	INTERGENIC
2R	21003936	2R_21003936_SNP [dm3] 2R_25116413_SNP [dm6]	A	G	4.303e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8399597	2L_8399597_SNP [dm3] 2L_8399597_SNP [dm6]	C	A	4.304e^-4	0.926	SYNONYMOUS_CODING CG13386 UPSTREAM CG31898	TF binding site mE1_TFBS_chinmo
X	12875113	X_12875113_SNP [dm3] X_12981080_SNP [dm6]	A	G	4.313e^-4	0.926	INTERGENIC
2L	9203404	2L_9203404_SNP [dm3] 2L_9203404_SNP [dm6]	C	T	4.328e^-4	0.926	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10487305	2R_10487305_SNP [dm3] 2R_14599800_SNP [dm6]	G	A	4.330e^-4	0.926	SYNONYMOUS_CODING RpI1
2R	17116195	2R_17116195_SNP [dm3] 2R_21228690_SNP [dm6]	A	G	4.332e^-4	0.926	INTRON ASPP
2R	12193462	2R_12193462_SNP [dm3] 2R_16305957_SNP [dm6]	A	T	4.337e^-4	0.926	EXON CR45232
3L	1963187	3L_1963187_SNP [dm3] 3L_1963187_SNP [dm6]	C	A	4.342e^-4	0.926	UTR_5_PRIME SCOT INTRON mv	TF binding site mE1_TFBS_Trl
X	10432959	X_10432959_SNP [dm3] X_10538926_SNP [dm6]	T	A	4.346e^-4	0.926	INTRON spri	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4686497	2L_4686497_SNP [dm3] 2L_4686497_SNP [dm6]	A	G	4.350e^-4	0.926	NON_SYNONYMOUS_CODING CG11929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20994349	2R_20994349_SNP [dm3] 2R_25106826_SNP [dm6]	C	T	4.363e^-4	0.926	INTRON lov
3R	26038754	3R_26038754_SNP [dm3] 3R_30213032_SNP [dm6]	A	G	4.364e^-4	0.926	DOWNSTREAM CecB & 1 other EXON Cec2
3R	23385786	3R_23385786_SNP [dm3] 3R_27560064_SNP [dm6]	T	C	4.364e^-4	0.926	UPSTREAM Klp98A DOWNSTREAM snmRNA:157 INTRON CG5646	TF binding site mE1_TFBS_chinmo
2L	10648714	2L_10648714_SNP [dm3] 2L_10648714_SNP [dm6]	C	T	4.366e^-4	0.926	INTRON CG17097	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	16348517	3L_16348517_SNP [dm3] 3L_16355417_SNP [dm6]	T	A	4.378e^-4	0.926	INTRON CG45057
2R	6740195	2R_6740195_SNP [dm3] 2R_10852690_SNP [dm6]	T	C	4.382e^-4	0.926	UPSTREAM CR45136 INTRON CG30015
2R	7517330	2R_7517330_SNP [dm3] 2R_11629825_SNP [dm6]	A	G	4.386e^-4	0.926	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5596171	X_5596171_SNP [dm3] X_5702138_SNP [dm6]	A	T	4.389e^-4	0.926	INTRON CG4096
2L	3540557	2L_3540557_SNP [dm3] 2L_3540557_SNP [dm6]	A	C	4.390e^-4	0.926	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
X	16593377	X_16593377_SNP [dm3] X_16699344_SNP [dm6]	T	G	4.396e^-4	0.926	NON_SYNONYMOUS_CODING CG9676 INTRON CG4678
X	12876161	X_12876161_SNP [dm3] X_12982128_SNP [dm6]	A	G	4.402e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4423327	X_4423327_SNP [dm3] X_4529294_SNP [dm6]	A	T	4.407e^-4	0.926	UPSTREAM CG3556 INTRON CR32773
3L	22515746	3L_22515746_SNP [dm3] 3L_22522646_SNP [dm6]	G	T	4.413e^-4	0.926	INTERGENIC
2R	20985571	2R_20985571_DEL [dm3] 2R_25098048_DEL [dm6]	TAGAA	C	4.422e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14611594	3R_14611594_SNP [dm3] 3R_18785872_SNP [dm6]	A	C	4.424e^-4	0.926	INTRON CG7720
3L	1963225	3L_1963225_SNP [dm3] 3L_1963225_SNP [dm6]	A	T	4.438e^-4	0.926	UTR_5_PRIME SCOT INTRON mv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3524737	2L_3524737_SNP [dm3] 2L_3524737_SNP [dm6]	A	T	4.448e^-4	0.926	UPSTREAM Sr-CIV & 1 other INTERGENIC
3R	23934632	3R_23934632_SNP [dm3] 3R_28108910_SNP [dm6]	C	T	4.460e^-4	0.926	INTERGENIC
2R	12193346	2R_12193346_SNP [dm3] 2R_16305841_SNP [dm6]	T	C	4.462e^-4	0.926	EXON CR45232
3R	27783917	3R_27783917_SNP [dm3] 3R_31958195_SNP [dm6]	T	G	4.473e^-4	0.926	INTRON heph
3R	23323254	3R_23323254_SNP [dm3] 3R_27497532_SNP [dm6]	A	G	4.479e^-4	0.926	INTERGENIC
X	18457838	X_18457838_SNP [dm3] X_18563805_SNP [dm6]	G	A	4.497e^-4	0.926	INTRON Bx
2R	601952	2R_601952_SNP [dm3] 2R_4714447_SNP [dm6]	G	C	4.498e^-4	0.926	INTRON Nipped-B	transposable element FlyBase
X	14092911	X_14092911_SNP [dm3] X_14198878_SNP [dm6]	A	C	4.502e^-4	0.926	SYNONYMOUS_CODING yl UPSTREAM mir-4917	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3849458	3L_3849458_SNP [dm3] 3L_3849458_SNP [dm6]	A	G	4.504e^-4	0.926	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	27786640	3R_27786640_SNP [dm3] 3R_31960918_SNP [dm6]	G	T	4.519e^-4	0.926	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8123177	2R_8123177_SNP [dm3] 2R_12235672_SNP [dm6]	C	T	4.529e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	954269	3L_954269_SNP [dm3] 3L_954269_SNP [dm6]	C	T	4.543e^-4	0.926	INTRON Glut1
2L	15995687	2L_15995687_SNP [dm3] 2L_15995687_SNP [dm6]	T	C	4.547e^-4	0.926	INTERGENIC
3R	20975182	3R_20975182_SNP [dm3] 3R_25149460_SNP [dm6]	G	A	4.548e^-4	0.926	INTERGENIC
3R	6861268	3R_6861268_SNP [dm3] 3R_11035546_SNP [dm6]	T	G	4.548e^-4	0.926	INTRON CG34114
2R	16178728	2R_16178728_SNP [dm3] 2R_20291223_SNP [dm6]	C	T	4.549e^-4	0.926	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	17483943	3L_17483943_SNP [dm3] 3L_17490843_SNP [dm6]	G	A	4.555e^-4	0.926	INTRON Oatp74D
2L	21290111	2L_21290111_SNP [dm3] 2L_21290111_SNP [dm6]	A	G	4.561e^-4	0.926	UPSTREAM Gr39a INTRON Mio
X	9482546	X_9482546_SNP [dm3] X_9588513_SNP [dm6]	C	T	4.562e^-4	0.926	UTR_3_PRIME Hex-A DOWNSTREAM Hex-A
2L	4806318	2L_4806318_DEL [dm3] 2L_4806318_DEL [dm6]	AAT	A	4.562e^-4	0.926	INTERGENIC
2R	4548166	2R_4548166_SNP [dm3] 2R_8660661_SNP [dm6]	T	A	4.566e^-4	0.926	INTRON ptc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	3239175	2L_3239175_SNP [dm3] 2L_3239175_SNP [dm6]	C	T	4.588e^-4	0.926	INTERGENIC
3R	20975287	3R_20975287_SNP [dm3] 3R_25149565_SNP [dm6]	C	T	4.592e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10454088	2L_10454088_SNP [dm3] 2L_10454088_SNP [dm6]	T	A	4.593e^-4	0.926	NON_SYNONYMOUS_CODING CG5322
2L	11191195	2L_11191195_SNP [dm3] 2L_11191195_SNP [dm6]	C	T	4.594e^-4	0.926	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7636812	2L_7636812_SNP [dm3] 2L_7636812_SNP [dm6]	C	T	4.596e^-4	0.926	UPSTREAM CR44800 DOWNSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10505928	2R_10505928_SNP [dm3] 2R_14618423_SNP [dm6]	A	C	4.608e^-4	0.926	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15096920	2L_15096920_SNP [dm3] 2L_15096920_SNP [dm6]	T	G	4.627e^-4	0.926	DOWNSTREAM CG15270 INTERGENIC
2R	21006183	2R_21006183_SNP [dm3] 2R_25118660_SNP [dm6]	A	G	4.632e^-4	0.926	INTRON lov
2R	15025900	2R_15025900_SNP [dm3] 2R_19138395_SNP [dm6]	C	A	4.632e^-4	0.926	INTRON CG15111
3R	21949101	3R_21949101_SNP [dm3] 3R_26123379_SNP [dm6]	G	A	4.637e^-4	0.926	INTRON CG31324
3L	3837103	3L_3837103_SNP [dm3] 3L_3837103_SNP [dm6]	T	G	4.654e^-4	0.926	SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16799099	2L_16799099_SNP [dm3] 2L_16799099_SNP [dm6]	C	T	4.661e^-4	0.926	START_GAINED Ugt36Bc UTR_5_PRIME Ugt36Bc UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb
2R	8295352	2R_8295352_SNP [dm3] 2R_12407847_SNP [dm6]	C	T	4.671e^-4	0.926	UTR_5_PRIME Cpr49Ag DOWNSTREAM Cpr49Af
2R	17920441	2R_17920441_SNP [dm3] 2R_22032936_SNP [dm6]	C	T	4.672e^-4	0.926	INTRON CG34370
2R	18516474	2R_18516474_SNP [dm3] 2R_22628969_SNP [dm6]	A	C	4.673e^-4	0.926	INTRON CG33143
3L	16763608	3L_16763608_SNP [dm3] 3L_16770508_SNP [dm6]	C	T	4.674e^-4	0.926	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16534869	X_16534869_SNP [dm3] X_16640836_SNP [dm6]	C	A	4.678e^-4	0.926	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	9391173	3L_9391173_DEL [dm3] 3L_9398073_DEL [dm6]	ATGTTG	A	4.681e^-4	0.926	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	16879762	2L_16879762_SNP [dm3] 2L_16879762_SNP [dm6]	T	G	4.687e^-4	0.926	NON_SYNONYMOUS_CODING CG34313 UTR_5_PRIME CG31743 UPSTREAM CG32832	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23588321	3R_23588321_SNP [dm3] 3R_27762599_SNP [dm6]	G	C	4.694e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16051122	X_16051122_SNP [dm3] X_16157089_SNP [dm6]	T	G	4.694e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18290303	3L_18290303_SNP [dm3] 3L_18297203_SNP [dm6]	C	T	4.699e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20358466	2R_20358466_INS [dm3] 2R_24470943_INS [dm6]	T	ATAATTATATC...	4.699e^-4	0.926	INTRON CG13579
3L	11955593	3L_11955593_SNP [dm3] 3L_11962493_SNP [dm6]	C	A	4.714e^-4	0.926	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	639977	2R_639977_SNP [dm3] 2R_4752472_SNP [dm6]	G	C	4.716e^-4	0.926	INTRON conu	transposable element FlyBase
2R	20987277	2R_20987277_SNP [dm3] 2R_25099754_SNP [dm6]	C	A	4.717e^-4	0.926	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20988966	2R_20988966_SNP [dm3] 2R_25101443_SNP [dm6]	G	T	4.717e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20992185	2R_20992185_DEL [dm3] 2R_25104662_DEL [dm6]	AAA	A	4.717e^-4	0.926	INTRON lov
2R	20996021	2R_20996021_SNP [dm3] 2R_25108498_SNP [dm6]	C	G	4.717e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	20999198	2R_20999198_SNP [dm3] 2R_25111675_SNP [dm6]	T	C	4.717e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	21004054	2R_21004054_SNP [dm3] 2R_25116531_SNP [dm6]	C	A	4.717e^-4	0.926	INTRON lov	TF binding site BDTNP1_TFBS_z
2R	21005791	2R_21005791_SNP [dm3] 2R_25118268_SNP [dm6]	A	T	4.717e^-4	0.926	INTRON lov
2R	21005793	2R_21005793_SNP [dm3] 2R_25118270_SNP [dm6]	A	T	4.717e^-4	0.926	INTRON lov
2R	21006203	2R_21006203_SNP [dm3] 2R_25118680_SNP [dm6]	A	C	4.717e^-4	0.926	INTRON lov
2R	21008933	2R_21008933_SNP [dm3] 2R_25121410_SNP [dm6]	A	T	4.717e^-4	0.926	INTRON lov	TF binding site mE1_TFBS_cad
X	12876162	X_12876162_SNP [dm3] X_12982129_SNP [dm6]	G	T	4.723e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3792505	3L_3792505_SNP [dm3] 3L_3792505_SNP [dm6]	G	A	4.729e^-4	0.926	DOWNSTREAM CG32266 INTRON CG32264
3R	8975496	3R_8975496_SNP [dm3] 3R_13149774_SNP [dm6]	C	T	4.736e^-4	0.926	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	1950743	3L_1950743_SNP [dm3] 3L_1950743_SNP [dm6]	G	A	4.739e^-4	0.926	DOWNSTREAM Cnb INTRON mv	TF binding site mE1_TFBS_cad
3L	19956325	3L_19956325_SNP [dm3] 3L_19963225_SNP [dm6]	T	A	4.759e^-4	0.926	INTRON Ac76E
3R	7649733	3R_7649733_SNP [dm3] 3R_11824011_SNP [dm6]	G	T	4.760e^-4	0.926	SYNONYMOUS_CODING CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1962876	2L_1962876_SNP [dm3] 2L_1962876_SNP [dm6]	C	A	4.763e^-4	0.926	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6719417	2R_6719417_SNP [dm3] 2R_10831912_SNP [dm6]	A	G	4.770e^-4	0.926	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1977839	3L_1977839_SNP [dm3] 3L_1977839_SNP [dm6]	A	T	4.770e^-4	0.926	INTERGENIC
2L	3536998	2L_3536998_SNP [dm3] 2L_3536998_SNP [dm6]	A	G	4.772e^-4	0.926	UPSTREAM CR44308 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7153962	2L_7153962_SNP [dm3] 2L_7153962_SNP [dm6]	T	G	4.777e^-4	0.926	INTRON Pvf3
2R	18752474	2R_18752474_SNP [dm3] 2R_22864951_SNP [dm6]	T	C	4.779e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11184280	2L_11184280_SNP [dm3] 2L_11184280_SNP [dm6]	G	A	4.781e^-4	0.926	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	8464084	2L_8464084_SNP [dm3] 2L_8464084_SNP [dm6]	T	A	4.783e^-4	0.926	UPSTREAM fu2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	12447770	2L_12447770_SNP [dm3] 2L_12447770_SNP [dm6]	A	G	4.796e^-4	0.926	SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Eb
2L	8702564	2L_8702564_SNP [dm3] 2L_8702564_SNP [dm6]	A	T	4.796e^-4	0.926	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	4078294	2R_4078294_SNP [dm3] 2R_8190789_SNP [dm6]	T	A	4.820e^-4	0.926	INTRON LRP1
2R	4831538	2R_4831538_SNP [dm3] 2R_8944033_SNP [dm6]	G	C	4.826e^-4	0.926	DOWNSTREAM CG8230 EXON CR44274
X	16900493	X_16900493_SNP [dm3] X_17006460_SNP [dm6]	C	T	4.830e^-4	0.926	INTRON CG45002
2L	8464624	2L_8464624_SNP [dm3] 2L_8464624_SNP [dm6]	T	G	4.838e^-4	0.926	NON_SYNONYMOUS_CODING fu2 UPSTREAM fu12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	5902303	3L_5902303_SNP [dm3] 3L_5909203_SNP [dm6]	C	G	4.843e^-4	0.926	SPLICE_SITE_REGION CG13288 INTRON CG13288
2L	12597141	2L_12597141_SNP [dm3] 2L_12597141_SNP [dm6]	G	A	4.861e^-4	0.926	INTRON nub
2L	12707545	2L_12707545_SNP [dm3] 2L_12707545_SNP [dm6]	T	A	4.878e^-4	0.926	START_GAINED CG15484 UTR_5_PRIME CG15484 UPSTREAM CG6180 DOWNSTREAM spict	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	21017071	2R_21017071_SNP [dm3] 2R_25129548_SNP [dm6]	C	A	4.880e^-4	0.926	INTRON lov & 1 other
2L	19533398	2L_19533398_SNP [dm3] 2L_19533398_SNP [dm6]	C	A	4.889e^-4	0.926	UPSTREAM CG33116 DOWNSTREAM CG10137 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8124836	2R_8124836_SNP [dm3] 2R_12237331_SNP [dm6]	T	A	4.895e^-4	0.926	INTERGENIC
2L	6264364	2L_6264364_SNP [dm3] 2L_6264364_SNP [dm6]	T	C	4.896e^-4	0.926	SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_sens
2L	9575089	2L_9575089_SNP [dm3] 2L_9575089_SNP [dm6]	T	G	4.898e^-4	0.926	SYNONYMOUS_CODING Mtpalpha
X	3231255	X_3231255_SNP [dm3] X_3337222_SNP [dm6]	T	C	4.898e^-4	0.926	INTRON CR44886 & 1 other
3R	10376239	3R_10376239_DEL [dm3] 3R_14550517_DEL [dm6]	AG	A	4.907e^-4	0.926	INTRON Pde6
3R	8379940	3R_8379940_SNP [dm3] 3R_12554218_SNP [dm6]	C	T	4.909e^-4	0.926	INTRON Octbeta2R
X	19011897	X_19011897_INS [dm3] X_19117864_INS [dm6]	G	GG	4.912e^-4	0.926	INTERGENIC
2R	10486756	2R_10486756_SNP [dm3] 2R_14599251_SNP [dm6]	A	T	4.913e^-4	0.926	SYNONYMOUS_CODING RpI1	TF binding site mE1_TFBS_sens
3L	10941291	3L_10941291_SNP [dm3] 3L_10948191_SNP [dm6]	C	A	4.916e^-4	0.926	INTERGENIC
X	3035414	X_3035414_SNP [dm3] X_3141381_SNP [dm6]	G	T	4.917e^-4	0.926	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_Trl
2R	20349962	2R_20349962_SNP [dm3] 2R_24462439_SNP [dm6]	C	A	4.918e^-4	0.926	INTRON CG13579
3L	4013232	3L_4013232_SNP [dm3] 3L_4013232_SNP [dm6]	A	G	4.924e^-4	0.926	INTERGENIC
2R	18516475	2R_18516475_SNP [dm3] 2R_22628970_SNP [dm6]	C	T	4.929e^-4	0.926	INTRON CG33143
X	8182526	X_8182526_SNP [dm3] X_8288493_SNP [dm6]	C	G	4.929e^-4	0.926	INTRON nAChRalpha3
2L	12697942	2L_12697942_SNP [dm3] 2L_12697942_SNP [dm6]	T	C	4.930e^-4	0.926	SYNONYMOUS_CODING PICK1 UPSTREAM CG5781 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14562980	3L_14562980_SNP [dm3] 3L_14569880_SNP [dm6]	C	T	4.932e^-4	0.926	INTERGENIC
2R	6648888	2R_6648888_SNP [dm3] 2R_10761383_SNP [dm6]	T	G	4.936e^-4	0.926	INTRON CG33144 EXON CR43605
2L	4726312	2L_4726312_SNP [dm3] 2L_4726312_SNP [dm6]	G	T	4.936e^-4	0.926	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18302601	3L_18302601_SNP [dm3] 3L_18309501_SNP [dm6]	C	T	4.937e^-4	0.926	INTERGENIC
X	10546015	X_10546015_SNP [dm3] X_10651982_SNP [dm6]	A	G	4.940e^-4	0.926	INTRON X11Lbeta
3L	1953735	3L_1953735_SNP [dm3] 3L_1953735_SNP [dm6]	A	T	4.948e^-4	0.926	SYNONYMOUS_CODING mv
2R	13769105	2R_13769105_SNP [dm3] 2R_17881600_SNP [dm6]	T	C	4.959e^-4	0.926	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
X	13615125	X_13615125_SNP [dm3] X_13721092_SNP [dm6]	C	T	4.960e^-4	0.926	SYNONYMOUS_CODING CG9941	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6530747	X_6530747_SNP [dm3] X_6636714_SNP [dm6]	T	C	4.966e^-4	0.926	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
3L	9535249	3L_9535249_SNP [dm3] 3L_9542149_SNP [dm6]	G	T	4.968e^-4	0.926	DOWNSTREAM Ir67a INTERGENIC
X	4918550	X_4918550_MNP [dm3] X_5024517_MNP [dm6]	TAA	CGG	4.974e^-4	0.926	INTRON CR44833
3R	21945351	3R_21945351_SNP [dm3] 3R_26119629_SNP [dm6]	T	G	4.976e^-4	0.926	INTRON CG31324
2L	22646388	2L_22646388_SNP [dm3] 2L_22753656_SNP [dm6]	A	T	4.977e^-4	0.926	INTRON CG40006
2R	20091250	2R_20091250_SNP [dm3] 2R_24203727_SNP [dm6]	T	G	4.978e^-4	0.926	UTR_3_PRIME CG11406 INTRON CG11406
3R	10376238	3R_10376238_SNP [dm3] 3R_14550516_SNP [dm6]	A	C	4.993e^-4	0.926	INTRON Pde6
3L	6465686	3L_6465686_SNP [dm3] 3L_6472586_SNP [dm6]	T	G	4.999e^-4	0.926	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5453208	2L_5453208_SNP [dm3] 2L_5453208_SNP [dm6]	C	T	5.004e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	16178742	2R_16178742_SNP [dm3] 2R_20291237_SNP [dm6]	A	G	5.009e^-4	0.926	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	5574933	3L_5574933_SNP [dm3] 3L_5581833_SNP [dm6]	C	T	5.015e^-4	0.926	INTERGENIC
3L	3843728	3L_3843728_SNP [dm3] 3L_3843728_SNP [dm6]	G	A	5.019e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7794857	3R_7794857_SNP [dm3] 3R_11969135_SNP [dm6]	A	C	5.020e^-4	0.926	INTRON GC1
3L	12238460	3L_12238460_SNP [dm3] 3L_12245360_SNP [dm6]	T	A	5.020e^-4	0.926	DOWNSTREAM CR43991 INTRON app
3R	23934434	3R_23934434_SNP [dm3] 3R_28108712_SNP [dm6]	T	A	5.023e^-4	0.926	INTERGENIC
3R	27786594	3R_27786594_SNP [dm3] 3R_31960872_SNP [dm6]	A	C	5.026e^-4	0.926	INTRON heph	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1009584	3L_1009584_SNP [dm3] 3L_1009584_SNP [dm6]	G	A	5.028e^-4	0.926	SYNONYMOUS_CODING trio
2R	16482160	2R_16482160_SNP [dm3] 2R_20594655_SNP [dm6]	G	A	5.030e^-4	0.926	INTRON bl
3L	13377518	3L_13377518_SNP [dm3] 3L_13384418_SNP [dm6]	C	T	5.031e^-4	0.926	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2R	11735585	2R_11735585_SNP [dm3] 2R_15848080_SNP [dm6]	C	T	5.033e^-4	0.926	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12413139	2R_12413139_SNP [dm3] 2R_16525634_SNP [dm6]	C	A	5.034e^-4	0.926	INTRON Sema-2a
2R	11735897	2R_11735897_SNP [dm3] 2R_15848392_SNP [dm6]	T	A	5.034e^-4	0.926	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2L	1728443	2L_1728443_SNP [dm3] 2L_1728443_SNP [dm6]	C	T	5.036e^-4	0.926	UTR_5_PRIME Eno UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10745074	3L_10745074_SNP [dm3] 3L_10751974_SNP [dm6]	T	C	5.048e^-4	0.926	INTERGENIC
X	17279229	X_17279229_SNP [dm3] X_17385196_SNP [dm6]	A	C	5.048e^-4	0.926	INTERGENIC
3R	27784109	3R_27784109_SNP [dm3] 3R_31958387_SNP [dm6]	G	T	5.050e^-4	0.926	INTRON heph
2R	15587410	2R_15587410_SNP [dm3] 2R_19699905_SNP [dm6]	C	T	5.057e^-4	0.926	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
2R	20754497	2R_20754497_SNP [dm3] 2R_24866974_SNP [dm6]	A	G	5.057e^-4	0.926	INTERGENIC
3R	17539186	3R_17539186_SNP [dm3] 3R_21713464_SNP [dm6]	A	G	5.070e^-4	0.926	INTRON CG31176	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3837750	3L_3837750_SNP [dm3] 3L_3837750_SNP [dm6]	C	A	5.084e^-4	0.926	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14475811	2L_14475811_SNP [dm3] 2L_14475811_SNP [dm6]	T	A	5.088e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	8289725	X_8289725_SNP [dm3] X_8395692_SNP [dm6]	A	G	5.098e^-4	0.926	INTERGENIC
2R	10216123	2R_10216123_SNP [dm3] 2R_14328618_SNP [dm6]	T	C	5.101e^-4	0.926	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8120239	2L_8120239_SNP [dm3] 2L_8120239_SNP [dm6]	G	T	5.123e^-4	0.926	SPLICE_SITE_REGION mon2 INTRON mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20209970	3R_20209970_SNP [dm3] 3R_24384248_SNP [dm6]	A	T	5.132e^-4	0.926	SYNONYMOUS_CODING CG17780
2R	7440194	2R_7440194_SNP [dm3] 2R_11552689_SNP [dm6]	A	C	5.133e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7866622	2R_7866622_SNP [dm3] 2R_11979117_SNP [dm6]	A	G	5.139e^-4	0.926	UTR_3_PRIME CG30037 UPSTREAM CG30036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8120282	2R_8120282_SNP [dm3] 2R_12232777_SNP [dm6]	T	G	5.139e^-4	0.926	INTERGENIC
2R	611376	2R_611376_SNP [dm3] 2R_4723871_SNP [dm6]	C	T	5.139e^-4	0.926	INTRON Nipped-B	transposable element FlyBase
3L	4805707	3L_4805707_SNP [dm3] 3L_4805707_SNP [dm6]	G	C	5.140e^-4	0.926	UPSTREAM CG7509 DOWNSTREAM CG18808 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	19794531	3L_19794531_SNP [dm3] 3L_19801431_SNP [dm6]	A	T	5.149e^-4	0.926	UTR_5_PRIME Ir76a UPSTREAM CG14102 INTRON Ir76a
2R	20058321	2R_20058321_SNP [dm3] 2R_24170798_SNP [dm6]	C	T	5.154e^-4	0.926	INTRON CG3328	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16877520	X_16877520_SNP [dm3] X_16983487_SNP [dm6]	A	G	5.156e^-4	0.926	INTRON CG45002
X	21008244	X_21008244_SNP [dm3] X_21137217_SNP [dm6]	C	T	5.158e^-4	0.926	NON_SYNONYMOUS_CODING CG34120
3L	10569054	3L_10569054_SNP [dm3] 3L_10575954_SNP [dm6]	T	C	5.159e^-4	0.926	INTRON A2bp1
3R	18692244	3R_18692244_SNP [dm3] 3R_22866522_SNP [dm6]	A	T	5.162e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12641004	2L_12641004_SNP [dm3] 2L_12641004_SNP [dm6]	T	C	5.168e^-4	0.926	START_GAINED Ref2 UTR_5_PRIME Ref2
2L	10345700	2L_10345700_SNP [dm3] 2L_10345700_SNP [dm6]	T	A	5.170e^-4	0.926	INTRON CG5022
2R	8123913	2R_8123913_SNP [dm3] 2R_12236408_SNP [dm6]	G	C	5.171e^-4	0.926	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5300666	3L_5300666_SNP [dm3] 3L_5307566_SNP [dm6]	A	C	5.171e^-4	0.926	INTERGENIC
X	17132311	X_17132311_SNP [dm3] X_17238278_SNP [dm6]	T	C	5.175e^-4	0.926	INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	4707649	2R_4707649_SNP [dm3] 2R_8820144_SNP [dm6]	A	G	5.181e^-4	0.926	INTRON sns
3L	4938772	3L_4938772_SNP [dm3] 3L_4938772_SNP [dm6]	T	A	5.182e^-4	0.926	UTR_3_PRIME Con
2L	4296160	2L_4296160_SNP [dm3] 2L_4296160_SNP [dm6]	G	T	5.184e^-4	0.926	INTRON tutl
3R	18628205	3R_18628205_SNP [dm3] 3R_22802483_SNP [dm6]	C	T	5.192e^-4	0.926	INTERGENIC
2R	1342074	2R_1342074_SNP [dm3] 2R_5454569_SNP [dm6]	T	C	5.197e^-4	0.926	SYNONYMOUS_CODING laccase2 DOWNSTREAM laccase2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12412983	2R_12412983_SNP [dm3] 2R_16525478_SNP [dm6]	T	A	5.204e^-4	0.926	INTRON Sema-2a

By genomic position
Variant impact
Gene name

cv_SleepLength_Day phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results