DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.943e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2309 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	1670165	2R_1670165_SNP [dm3] 2R_5782660_SNP [dm6]	A	C	5.368e^-7	0.551	UTR_5_PRIME ZnT41F INTRON ZnT41F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	11934340	3L_11934340_SNP [dm3] 3L_11941240_SNP [dm6]	G	A	1.283e^-6	0.551	UPSTREAM Rpt4R INTERGENIC
2L	15761906	2L_15761906_SNP [dm3] 2L_15761906_SNP [dm6]	C	T	1.345e^-6	0.551	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	2.138e^-6	0.551	INTRON AdipoR
2R	640955	2R_640955_SNP [dm3] 2R_4753450_SNP [dm6]	G	A	2.225e^-6	0.551	INTRON conu	transposable element FlyBase
3R	18806555	3R_18806555_SNP [dm3] 3R_22980833_SNP [dm6]	G	T	2.488e^-6	0.551	DOWNSTREAM Nha2 INTERGENIC
2R	631165	2R_631165_SNP [dm3] 2R_4743660_SNP [dm6]	A	C	3.037e^-6	0.551	UPSTREAM conu INTERGENIC
X	17664068	X_17664068_SNP [dm3] X_17770035_SNP [dm6]	T	A	3.044e^-6	0.551	INTRON unc-4
3R	23003428	3R_23003428_SNP [dm3] 3R_27177706_SNP [dm6]	A	C	3.246e^-6	0.551	INTRON Ser	TF binding site mE1_TFBS_cad
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	4.024e^-6	0.551	INTRON AdipoR
2R	8578063	2R_8578063_SNP [dm3] 2R_12690558_SNP [dm6]	T	G	5.236e^-6	0.551	UPSTREAM CG30053 DOWNSTREAM CG8768 INTRON Obp49a
2R	6740176	2R_6740176_SNP [dm3] 2R_10852671_SNP [dm6]	T	C	5.388e^-6	0.551	UPSTREAM CR45136 INTRON CG30015
2L	5112172	2L_5112172_SNP [dm3] 2L_5112172_SNP [dm6]	C	T	5.658e^-6	0.551	INTRON Msp300
X	8829278	X_8829278_SNP [dm3] X_8935245_SNP [dm6]	C	A	5.894e^-6	0.551	INTRON rdgA
2R	18871789	2R_18871789_SNP [dm3] 2R_22984266_SNP [dm6]	T	A	6.128e^-6	0.551	NON_SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833 & 1 other	TF binding site mE1_TFBS_cad
X	17664374	X_17664374_SNP [dm3] X_17770341_SNP [dm6]	G	A	6.233e^-6	0.551	INTRON unc-4
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	6.451e^-6	0.551	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	14566262	2L_14566262_SNP [dm3] 2L_14566262_SNP [dm6]	A	G	7.533e^-6	0.551	INTERGENIC
3L	14187859	3L_14187859_SNP [dm3] 3L_14194759_SNP [dm6]	T	G	7.687e^-6	0.551	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6104257	2L_6104257_SNP [dm3] 2L_6104257_SNP [dm6]	G	A	8.062e^-6	0.551	INTRON stai
3R	17628117	3R_17628117_SNP [dm3] 3R_21802395_SNP [dm6]	C	G	8.173e^-6	0.551	INTRON CASK	TF binding site BDTNP1_TFBS_twi
2L	17542255	2L_17542255_SNP [dm3] 2L_17542255_SNP [dm6]	T	A	8.391e^-6	0.551	EXON CR43304
2L	19880511	2L_19880511_SNP [dm3] 2L_19880511_SNP [dm6]	G	A	8.546e^-6	0.551	INTRON sick
2R	18871827	2R_18871827_SNP [dm3] 2R_22984304_SNP [dm6]	G	T	8.973e^-6	0.551	UTR_3_PRIME CG32833 UPSTREAM CG32834 DOWNSTREAM mir-4939	TF binding site mE1_TFBS_cad
2R	18871876	2R_18871876_SNP [dm3] 2R_22984353_SNP [dm6]	C	T	8.973e^-6	0.551	UTR_3_PRIME CG32833 UPSTREAM CG32834 DOWNSTREAM mir-4939
2R	6740149	2R_6740149_SNP [dm3] 2R_10852644_SNP [dm6]	G	T	8.995e^-6	0.551	UPSTREAM CR45136 INTRON CG30015
2L	5112218	2L_5112218_SNP [dm3] 2L_5112218_SNP [dm6]	A	T	9.017e^-6	0.551	INTRON Msp300
2R	4074894	2R_4074894_SNP [dm3] 2R_8187389_SNP [dm6]	A	G	9.222e^-6	0.551	INTRON LRP1
2R	628542	2R_628542_SNP [dm3] 2R_4741037_SNP [dm6]	G	A	9.259e^-6	0.551	INTERGENIC	transposable element FlyBase
2L	14420113	2L_14420113_SNP [dm3] 2L_14420113_SNP [dm6]	A	G	9.311e^-6	0.551	INTERGENIC
2R	639021	2R_639021_SNP [dm3] 2R_4751516_SNP [dm6]	T	A	9.437e^-6	0.551	INTRON conu
X	7882433	X_7882433_SNP [dm3] X_7988400_SNP [dm6]	T	C	9.484e^-6	0.551	INTERGENIC
2R	639457	2R_639457_SNP [dm3] 2R_4751952_SNP [dm6]	G	T	1.043e^-5	0.551	INTRON conu	transposable element FlyBase
3R	23003425	3R_23003425_SNP [dm3] 3R_27177703_SNP [dm6]	T	C	1.074e^-5	0.551	INTRON Ser	TF binding site mE1_TFBS_cad
3L	23564711	3L_23564711_INS [dm3] 3L_23571611_INS [dm6]	T	TCT	1.115e^-5	0.551	INTRON AGO3
2R	639977	2R_639977_SNP [dm3] 2R_4752472_SNP [dm6]	G	C	1.151e^-5	0.551	INTRON conu	transposable element FlyBase
2R	6740195	2R_6740195_SNP [dm3] 2R_10852690_SNP [dm6]	T	C	1.159e^-5	0.551	UPSTREAM CR45136 INTRON CG30015
3R	23003416	3R_23003416_DEL [dm3] 3R_27177694_DEL [dm6]	ATA	A	1.173e^-5	0.551	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003431	3R_23003431_SNP [dm3] 3R_27177709_SNP [dm6]	T	G	1.173e^-5	0.551	INTRON Ser	TF binding site mE1_TFBS_cad
X	17664612	X_17664612_SNP [dm3] X_17770579_SNP [dm6]	A	C	1.175e^-5	0.551	INTRON unc-4
3R	23771596	3R_23771596_SNP [dm3] 3R_27945874_SNP [dm6]	C	G	1.285e^-5	0.583	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	6740167	2R_6740167_SNP [dm3] 2R_10852662_SNP [dm6]	T	C	1.307e^-5	0.583	UPSTREAM CR45136 INTRON CG30015
3L	10563477	3L_10563477_SNP [dm3] 3L_10570377_SNP [dm6]	G	T	1.388e^-5	0.596	INTRON A2bp1
X	17664526	X_17664526_SNP [dm3] X_17770493_SNP [dm6]	A	G	1.399e^-5	0.596	INTRON unc-4
X	10028879	X_10028879_SNP [dm3] X_10134846_SNP [dm6]	G	A	1.440e^-5	0.6	INTRON CR44894 & 1 other
2R	19239810	2R_19239810_SNP [dm3] 2R_23352287_SNP [dm6]	A	G	1.540e^-5	0.609	DOWNSTREAM CG34210 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8578064	2R_8578064_SNP [dm3] 2R_12690559_SNP [dm6]	T	G	1.570e^-5	0.609	UPSTREAM CG30053 DOWNSTREAM CG8768 INTRON Obp49a
2L	14566327	2L_14566327_SNP [dm3] 2L_14566327_SNP [dm6]	A	T	1.616e^-5	0.609	INTERGENIC
2R	18871831	2R_18871831_SNP [dm3] 2R_22984308_SNP [dm6]	G	A	1.685e^-5	0.609	UTR_3_PRIME CG32833 UPSTREAM CG32834 DOWNSTREAM mir-4939	TF binding site mE1_TFBS_cad
3L	14187940	3L_14187940_SNP [dm3] 3L_14194840_SNP [dm6]	T	C	1.706e^-5	0.609	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16648748	3L_16648748_SNP [dm3] 3L_16655648_SNP [dm6]	A	T	1.710e^-5	0.609	INTRON Baldspot
X	3140939	X_3140939_SNP [dm3] X_3246906_SNP [dm6]	A	G	1.737e^-5	0.609	INTRON dnc
X	17664555	X_17664555_DEL [dm3] X_17770522_DEL [dm6]	TC	T	1.777e^-5	0.609	INTRON unc-4
3L	24304032	3L_24304032_SNP [dm3] 3L_24310932_SNP [dm6]	A	C	1.784e^-5	0.609	INTERGENIC
2L	14420187	2L_14420187_DEL [dm3] 2L_14420187_DEL [dm6]	ATTGTA	A	1.807e^-5	0.609	INTERGENIC
3R	4251383	3R_4251383_SNP [dm3] 3R_8425661_SNP [dm6]	A	G	1.923e^-5	0.609	INTRON CG45263
2R	628373	2R_628373_SNP [dm3] 2R_4740868_SNP [dm6]	G	T	1.972e^-5	0.609	INTERGENIC	transposable element FlyBase
X	3731998	X_3731998_DEL [dm3] X_3837965_DEL [dm6]	ATGCCCCA	A	2.011e^-5	0.609	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17542256	2L_17542256_SNP [dm3] 2L_17542256_SNP [dm6]	T	A	2.036e^-5	0.609	EXON CR43304
2L	5112167	2L_5112167_SNP [dm3] 2L_5112167_SNP [dm6]	T	C	2.068e^-5	0.609	INTRON Msp300
3L	20772789	3L_20772789_SNP [dm3] 3L_20779689_SNP [dm6]	G	A	2.069e^-5	0.609	SYNONYMOUS_CODING Pex14 DOWNSTREAM CG11399	TF binding site BDTNP1_TFBS_dl
2R	6740106	2R_6740106_SNP [dm3] 2R_10852601_SNP [dm6]	A	C	2.078e^-5	0.609	UPSTREAM CR45136 INTRON CG30015
X	12876436	X_12876436_SNP [dm3] X_12982403_SNP [dm6]	C	T	2.119e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23003397	3R_23003397_SNP [dm3] 3R_27177675_SNP [dm6]	C	A	2.166e^-5	0.609	INTRON Ser	TF binding site mE1_TFBS_cad
X	17664572	X_17664572_INS [dm3] X_17770539_INS [dm6]	G	GC	2.169e^-5	0.609	INTRON unc-4
3L	15867278	3L_15867278_SNP [dm3] 3L_15874178_SNP [dm6]	C	T	2.217e^-5	0.609	INTRON pHCl
2R	9240636	2R_9240636_SNP [dm3] 2R_13353131_SNP [dm6]	A	G	2.237e^-5	0.609	DOWNSTREAM CG17048 INTRON CR44206
2R	10415898	2R_10415898_SNP [dm3] 2R_14528393_SNP [dm6]	C	A	2.280e^-5	0.609	INTRON ttv
3R	13425255	3R_13425255_SNP [dm3] 3R_17599533_SNP [dm6]	A	T	2.292e^-5	0.609	INTERGENIC
3R	19009345	3R_19009345_SNP [dm3] 3R_23183623_SNP [dm6]	G	A	2.368e^-5	0.609	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17652679	3R_17652679_SNP [dm3] 3R_21826957_SNP [dm6]	T	C	2.371e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19900253	2L_19900253_SNP [dm3] 2L_19900253_SNP [dm6]	T	A	2.391e^-5	0.609	INTRON sick
2R	8579777	2R_8579777_SNP [dm3] 2R_12692272_SNP [dm6]	A	G	2.440e^-5	0.609	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	639567	2R_639567_SNP [dm3] 2R_4752062_SNP [dm6]	A	G	2.457e^-5	0.609	INTRON conu
2R	15193193	2R_15193193_SNP [dm3] 2R_19305688_SNP [dm6]	G	A	2.489e^-5	0.609	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	24275189	3L_24275189_INS [dm3] 3L_24282089_INS [dm6]	A	AT	2.543e^-5	0.609	INTRON Snap25
2R	20265849	2R_20265849_SNP [dm3] 2R_24378326_SNP [dm6]	A	G	2.555e^-5	0.609	NON_SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
3R	23771559	3R_23771559_SNP [dm3] 3R_27945837_SNP [dm6]	G	T	2.570e^-5	0.609	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	7882441	X_7882441_SNP [dm3] X_7988408_SNP [dm6]	A	G	2.607e^-5	0.609	INTERGENIC
3L	24220261	3L_24220261_SNP [dm3] 3L_24227161_SNP [dm6]	T	A	2.626e^-5	0.609	INTRON Snap25
2R	18053190	2R_18053190_INS [dm3] 2R_22165685_INS [dm6]	T	TCT	2.668e^-5	0.609	INTRON a
2R	15527960	2R_15527960_SNP [dm3] 2R_19640455_SNP [dm6]	A	G	2.724e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15527958	2R_15527958_SNP [dm3] 2R_19640453_SNP [dm6]	T	C	2.843e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12385790	3L_12385790_SNP [dm3] 3L_12392690_SNP [dm6]	C	T	2.849e^-5	0.609	INTERGENIC
2R	15528006	2R_15528006_SNP [dm3] 2R_19640501_SNP [dm6]	T	G	2.868e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2409065	X_2409065_SNP [dm3] X_2515032_SNP [dm6]	T	C	2.875e^-5	0.609	INTRON trol
2L	14397596	2L_14397596_SNP [dm3] 2L_14397596_SNP [dm6]	A	G	2.917e^-5	0.609	INTRON elB
2R	18045677	2R_18045677_SNP [dm3] 2R_22158172_SNP [dm6]	G	A	2.939e^-5	0.609	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17664276	X_17664276_DEL [dm3] X_17770243_DEL [dm6]	AAAAAAAGTGTTAAGG...	A	2.941e^-5	0.609	INTRON unc-4
2L	20948166	2L_20948166_SNP [dm3] 2L_20948166_SNP [dm6]	A	G	2.951e^-5	0.609	EXON CR44606
3L	24114174	3L_24114174_SNP [dm3] 3L_24121074_SNP [dm6]	T	C	2.957e^-5	0.609	INTRON Snap25
3L	20031463	3L_20031463_SNP [dm3] 3L_20038363_SNP [dm6]	A	T	2.993e^-5	0.61	INTERGENIC
X	17664061	X_17664061_SNP [dm3] X_17770028_SNP [dm6]	G	C	3.176e^-5	0.61	INTRON unc-4
2L	6370055	2L_6370055_SNP [dm3] 2L_6370055_SNP [dm6]	G	A	3.181e^-5	0.61	NON_SYNONYMOUS_CODING CG9505	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9078579	2L_9078579_SNP [dm3] 2L_9078579_SNP [dm6]	T	C	3.192e^-5	0.61	DOWNSTREAM CG12439 INTERGENIC
2L	9078577	2L_9078577_INS [dm3] 2L_9078577_INS [dm6]	A	AA	3.201e^-5	0.61	DOWNSTREAM CG12439 INTERGENIC
2R	15528258	2R_15528258_SNP [dm3] 2R_19640753_SNP [dm6]	G	A	3.210e^-5	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6746247	2R_6746247_SNP [dm3] 2R_10858742_SNP [dm6]	G	A	3.262e^-5	0.61	UPSTREAM CR44302 INTRON CG30015
3L	24276309	3L_24276309_SNP [dm3] 3L_24283209_SNP [dm6]	A	T	3.316e^-5	0.61	INTRON Snap25
3L	904518	3L_904518_SNP [dm3] 3L_904518_SNP [dm6]	A	C	3.321e^-5	0.61	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17652674	3R_17652674_SNP [dm3] 3R_21826952_SNP [dm6]	A	G	3.357e^-5	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11934457	3L_11934457_SNP [dm3] 3L_11941357_SNP [dm6]	A	T	3.393e^-5	0.61	UPSTREAM Rpt4R INTERGENIC
3R	23003429	3R_23003429_SNP [dm3] 3R_27177707_SNP [dm6]	A	C	3.416e^-5	0.61	INTRON Ser	TF binding site mE1_TFBS_cad
X	17664545	X_17664545_SNP [dm3] X_17770512_SNP [dm6]	C	T	3.487e^-5	0.61	INTRON unc-4
3R	7161087	3R_7161087_SNP [dm3] 3R_11335365_SNP [dm6]	G	A	3.495e^-5	0.61	UTR_5_PRIME pros INTRON pros	TF binding site BDTNP1_TFBS_dl
2R	628616	2R_628616_SNP [dm3] 2R_4741111_SNP [dm6]	A	C	3.507e^-5	0.61	INTERGENIC	transposable element FlyBase
3L	24284107	3L_24284107_SNP [dm3] 3L_24291007_SNP [dm6]	A	T	3.550e^-5	0.61	UPSTREAM CR45159 INTRON Snap25
3L	24284117	3L_24284117_SNP [dm3] 3L_24291017_SNP [dm6]	T	G	3.550e^-5	0.61	UPSTREAM CR45159 INTRON Snap25
X	13394919	X_13394919_SNP [dm3] X_13500886_SNP [dm6]	A	G	3.608e^-5	0.61	INTRON Neto
2R	18867611	2R_18867611_SNP [dm3] 2R_22980088_SNP [dm6]	G	T	3.633e^-5	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24295097	3L_24295097_SNP [dm3] 3L_24301997_SNP [dm6]	T	A	3.762e^-5	0.61	INTERGENIC
3L	11368628	3L_11368628_SNP [dm3] 3L_11375528_SNP [dm6]	G	C	3.788e^-5	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10415975	2R_10415975_SNP [dm3] 2R_14528470_SNP [dm6]	T	C	3.800e^-5	0.61	INTRON ttv
2R	10892958	2R_10892958_SNP [dm3] 2R_15005453_SNP [dm6]	G	T	3.888e^-5	0.61	INTERGENIC
X	17664033	X_17664033_SNP [dm3] X_17770000_SNP [dm6]	T	A	3.930e^-5	0.61	INTRON unc-4
2L	1988354	2L_1988354_SNP [dm3] 2L_1988354_SNP [dm6]	T	A	3.936e^-5	0.61	UTR_5_PRIME Npc2a UPSTREAM Got2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16234192	3L_16234192_SNP [dm3] 3L_16241092_SNP [dm6]	A	T	3.971e^-5	0.61	INTERGENIC
3L	23606613	3L_23606613_SNP [dm3] 3L_23613513_SNP [dm6]	C	T	3.976e^-5	0.61	INTRON AGO3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	10563298	3L_10563298_SNP [dm3] 3L_10570198_SNP [dm6]	A	G	4.021e^-5	0.61	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2L	9078557	2L_9078557_SNP [dm3] 2L_9078557_SNP [dm6]	C	T	4.027e^-5	0.61	DOWNSTREAM CG12439 INTERGENIC
X	11741736	X_11741736_INS [dm3] X_11847703_INS [dm6]	T	TGGCCGAAAGGGG...	4.087e^-5	0.61	INTERGENIC
3L	24246214	3L_24246214_SNP [dm3] 3L_24253114_SNP [dm6]	G	T	4.110e^-5	0.61	INTRON Snap25
3L	24284367	3L_24284367_SNP [dm3] 3L_24291267_SNP [dm6]	A	T	4.113e^-5	0.61	UPSTREAM CR45159 INTRON Snap25
X	10137255	X_10137255_SNP [dm3] X_10243222_SNP [dm6]	A	G	4.125e^-5	0.61	INTRON Hk
2L	2287968	2L_2287968_SNP [dm3] 2L_2287968_SNP [dm6]	C	T	4.126e^-5	0.61	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3R	19569491	3R_19569491_SNP [dm3] 3R_23743769_SNP [dm6]	T	A	4.129e^-5	0.61	INTRON Hmgcr
2R	6730918	2R_6730918_SNP [dm3] 2R_10843413_SNP [dm6]	T	C	4.139e^-5	0.61	SYNONYMOUS_CODING CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	24287914	3L_24287914_SNP [dm3] 3L_24294814_SNP [dm6]	A	T	4.162e^-5	0.61	INTRON Snap25
2R	14035900	2R_14035900_SNP [dm3] 2R_18148395_SNP [dm6]	T	G	4.246e^-5	0.617	UTR_3_PRIME CG5742 UPSTREAM CG17680 DOWNSTREAM CG5742	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	624512	2R_624512_SNP [dm3] 2R_4737007_SNP [dm6]	A	G	4.324e^-5	0.622	INTERGENIC
3L	12714005	3L_12714005_SNP [dm3] 3L_12720905_SNP [dm6]	T	A	4.348e^-5	0.622	INTERGENIC
X	7280721	X_7280721_SNP [dm3] X_7386688_SNP [dm6]	A	G	4.420e^-5	0.624	INTRON CG1677 & 1 other
2L	14420177	2L_14420177_SNP [dm3] 2L_14420177_SNP [dm6]	T	C	4.506e^-5	0.624	INTERGENIC
X	17922709	X_17922709_SNP [dm3] X_18028676_SNP [dm6]	T	C	4.537e^-5	0.624	DOWNSTREAM CG6867 INTRON Sh
X	6167713	X_6167713_SNP [dm3] X_6273680_SNP [dm6]	C	T	4.567e^-5	0.624	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23771742	3R_23771742_SNP [dm3] 3R_27946020_SNP [dm6]	A	T	4.567e^-5	0.624	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8238525	2L_8238525_SNP [dm3] 2L_8238525_SNP [dm6]	C	G	4.640e^-5	0.624	INTRON Pvr
3R	18090615	3R_18090615_SNP [dm3] 3R_22264893_SNP [dm6]	A	G	4.650e^-5	0.624	INTRON SKIP
X	5260235	X_5260235_SNP [dm3] X_5366202_SNP [dm6]	G	A	4.705e^-5	0.624	INTRON SK
2R	4014979	2R_4014979_SNP [dm3] 2R_8127474_SNP [dm6]	A	C	4.734e^-5	0.624	UPSTREAM Socs44A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	9078553	2L_9078553_SNP [dm3] 2L_9078553_SNP [dm6]	T	A	4.743e^-5	0.624	DOWNSTREAM CG12439 INTERGENIC
3L	15865251	3L_15865251_DEL [dm3] 3L_15872151_DEL [dm6]	AAAACTGAAGAATA...	A	4.759e^-5	0.624	INTRON pHCl
X	3715610	X_3715610_SNP [dm3] X_3821577_SNP [dm6]	G	C	4.760e^-5	0.624	INTRON ec	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12991563	X_12991563_SNP [dm3] X_13097530_SNP [dm6]	G	A	4.806e^-5	0.626	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	5910431	3R_5910431_SNP [dm3] 3R_10084709_SNP [dm6]	G	A	4.863e^-5	0.629	INTRON CR45054	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22604195	3R_22604195_SNP [dm3] 3R_26778473_SNP [dm6]	C	T	4.974e^-5	0.635	INTERGENIC
3L	2057939	3L_2057939_SNP [dm3] 3L_2057939_SNP [dm6]	C	T	4.976e^-5	0.635	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	24288308	3L_24288308_SNP [dm3] 3L_24295208_SNP [dm6]	A	T	5.031e^-5	0.638	INTRON Snap25
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	5.069e^-5	0.638	INTRON Con
2L	9078619	2L_9078619_SNP [dm3] 2L_9078619_SNP [dm6]	G	C	5.158e^-5	0.645	DOWNSTREAM CG12439 INTERGENIC
3R	18266683	3R_18266683_SNP [dm3] 3R_22440961_SNP [dm6]	G	A	5.221e^-5	0.645	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
2R	20145005	2R_20145005_SNP [dm3] 2R_24257482_SNP [dm6]	T	C	5.231e^-5	0.645	UPSTREAM CG3376 DOWNSTREAM CG13575 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14153993	2R_14153993_SNP [dm3] 2R_18266488_SNP [dm6]	G	C	5.288e^-5	0.648	INTERGENIC
2R	13913384	2R_13913384_SNP [dm3] 2R_18025879_SNP [dm6]	T	A	5.389e^-5	0.656	INTERGENIC
3R	18729187	3R_18729187_SNP [dm3] 3R_22903465_SNP [dm6]	G	A	5.473e^-5	0.662	INTRON klg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14830962	3R_14830962_SNP [dm3] 3R_19005240_SNP [dm6]	A	G	5.510e^-5	0.662	INTRON gukh
2R	20054528	2R_20054528_SNP [dm3] 2R_24167005_SNP [dm6]	C	T	5.601e^-5	0.662	UPSTREAM CG3328 INTRON CG3328	TF binding site mE1_TFBS_chinmo
X	20470499	X_20470499_SNP [dm3] X_20599472_SNP [dm6]	C	T	5.612e^-5	0.662	INTRON RunxA
2L	11191195	2L_11191195_SNP [dm3] 2L_11191195_SNP [dm6]	C	T	5.651e^-5	0.662	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14187888	3L_14187888_DEL [dm3] 3L_14194788_DEL [dm6]	TACAAAGAAGAGTT...	T	5.683e^-5	0.662	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20548803	3R_20548803_SNP [dm3] 3R_24723081_SNP [dm6]	C	G	5.724e^-5	0.662	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
X	8741317	X_8741317_SNP [dm3] X_8847284_SNP [dm6]	A	T	5.733e^-5	0.662	INTRON CG12075
2R	15528021	2R_15528021_SNP [dm3] 2R_19640516_SNP [dm6]	G	T	5.777e^-5	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17664059	X_17664059_SNP [dm3] X_17770026_SNP [dm6]	A	G	5.788e^-5	0.662	INTRON unc-4
X	18415857	X_18415857_SNP [dm3] X_18521824_SNP [dm6]	C	T	5.871e^-5	0.667	NON_SYNONYMOUS_CODING CG6481 INTRON Bx	TF binding site mE1_TFBS_sens
X	7280726	X_7280726_SNP [dm3] X_7386693_SNP [dm6]	C	T	5.907e^-5	0.667	INTRON CG1677 & 1 other
2R	15528029	2R_15528029_SNP [dm3] 2R_19640524_SNP [dm6]	C	A	5.948e^-5	0.668	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23771788	3R_23771788_SNP [dm3] 3R_27946066_SNP [dm6]	C	A	5.994e^-5	0.669	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	15528023	2R_15528023_SNP [dm3] 2R_19640518_SNP [dm6]	G	T	6.054e^-5	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18453184	2R_18453184_SNP [dm3] 2R_22565679_SNP [dm6]	G	A	6.061e^-5	0.669	INTRON dnr1	TF binding site mE1_TFBS_cad
2L	14420162	2L_14420162_INS [dm3] 2L_14420162_INS [dm6]	C	CCAGGTAATGC...	6.153e^-5	0.675	INTERGENIC
2L	9374227	2L_9374227_SNP [dm3] 2L_9374227_SNP [dm6]	C	T	6.237e^-5	0.675	DOWNSTREAM CR43865 INTRON Shawl
X	5260641	X_5260641_SNP [dm3] X_5366608_SNP [dm6]	C	G	6.301e^-5	0.675	INTRON SK
2R	8579742	2R_8579742_SNP [dm3] 2R_12692237_SNP [dm6]	T	G	6.313e^-5	0.675	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	2927970	2L_2927970_SNP [dm3] 2L_2927970_SNP [dm6]	G	A	6.379e^-5	0.675	INTRON lilli
3L	17403615	3L_17403615_DEL [dm3] 3L_17410515_DEL [dm6]	AA	A	6.387e^-5	0.675	INTRON blot
3L	9545814	3L_9545814_SNP [dm3] 3L_9552714_SNP [dm6]	T	A	6.427e^-5	0.675	INTRON CG42673
2R	6746133	2R_6746133_SNP [dm3] 2R_10858628_SNP [dm6]	A	G	6.434e^-5	0.675	INTRON CG30015
2R	619835	2R_619835_SNP [dm3] 2R_4732330_SNP [dm6]	G	A	6.444e^-5	0.675	DOWNSTREAM CR45471 EXON CR41440
2R	18051416	2R_18051416_SNP [dm3] 2R_22163911_SNP [dm6]	G	T	6.504e^-5	0.678	NON_SYNONYMOUS_CODING CG34206 INTRON a
2L	7144253	2L_7144253_SNP [dm3] 2L_7144253_SNP [dm6]	T	G	6.589e^-5	0.681	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15134708	3L_15134708_SNP [dm3] 3L_15141608_SNP [dm6]	G	A	6.653e^-5	0.681	UPSTREAM CR45396 INTRON Pdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	24288025	3L_24288025_SNP [dm3] 3L_24294925_SNP [dm6]	C	T	6.683e^-5	0.681	INTRON Snap25
2R	1405410	2R_1405410_SNP [dm3] 2R_5517905_SNP [dm6]	T	C	6.683e^-5	0.681	INTRON CG30438	transposable element FlyBase
2R	625893	2R_625893_SNP [dm3] 2R_4738388_SNP [dm6]	T	A	6.721e^-5	0.681	INTERGENIC	transposable element FlyBase
3L	16639494	3L_16639494_SNP [dm3] 3L_16646394_SNP [dm6]	C	G	6.860e^-5	0.688	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6036927	X_6036927_SNP [dm3] X_6142894_SNP [dm6]	A	T	6.892e^-5	0.688	INTRON Ca-alpha1T
2L	515666	2L_515666_SNP [dm3] 2L_515666_SNP [dm6]	A	G	6.919e^-5	0.688	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	24289093	3L_24289093_SNP [dm3] 3L_24295993_SNP [dm6]	C	T	6.991e^-5	0.688	INTRON Snap25
3L	22969815	3L_22969815_SNP [dm3] 3L_22976715_SNP [dm6]	G	T	6.992e^-5	0.688	INTERGENIC	transposable element FlyBase
3R	26490574	3R_26490574_SNP [dm3] 3R_30664852_SNP [dm6]	C	A	7.009e^-5	0.688	EXON CR45191
2L	11345257	2L_11345257_SNP [dm3] 2L_11345257_SNP [dm6]	A	G	7.066e^-5	0.688	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	4652891	3L_4652891_SNP [dm3] 3L_4652891_SNP [dm6]	G	A	7.080e^-5	0.688	INTRON axo
2L	14754898	2L_14754898_SNP [dm3] 2L_14754898_SNP [dm6]	G	T	7.171e^-5	0.693	INTERGENIC
X	13208126	X_13208126_SNP [dm3] X_13314093_SNP [dm6]	A	T	7.266e^-5	0.697	UPSTREAM IP3K2 INTRON IP3K2
2L	14420200	2L_14420200_SNP [dm3] 2L_14420200_SNP [dm6]	G	C	7.281e^-5	0.697	INTERGENIC
3L	23489054	3L_23489054_SNP [dm3] 3L_23495954_SNP [dm6]	T	C	7.392e^-5	0.699	INTERGENIC	transposable element FlyBase
2R	628742	2R_628742_SNP [dm3] 2R_4741237_SNP [dm6]	A	C	7.448e^-5	0.699	INTERGENIC	transposable element FlyBase
X	6167692	X_6167692_SNP [dm3] X_6273659_SNP [dm6]	C	T	7.459e^-5	0.699	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11508784	3L_11508784_SNP [dm3] 3L_11515684_SNP [dm6]	C	A	7.479e^-5	0.699	INTRON CG7512
2L	9281728	2L_9281728_SNP [dm3] 2L_9281728_SNP [dm6]	T	C	7.491e^-5	0.699	INTRON Ggamma30A
3L	15134710	3L_15134710_SNP [dm3] 3L_15141610_SNP [dm6]	C	A	7.613e^-5	0.706	UPSTREAM CR45396 INTRON Pdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	5566142	3L_5566142_SNP [dm3] 3L_5573042_SNP [dm6]	A	C	7.693e^-5	0.706	INTRON Msr-110
2R	10164898	2R_10164898_DEL [dm3] 2R_14277393_DEL [dm6]	CGAAAGCAAACACGATAAAT...	C	7.708e^-5	0.706	UTR_5_PRIME Ih
X	19500446	X_19500446_SNP [dm3] X_19606413_SNP [dm6]	T	G	7.719e^-5	0.706	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11235989	3R_11235989_SNP [dm3] 3R_15410267_SNP [dm6]	T	A	7.812e^-5	0.711	UPSTREAM Atx2 INTRON Atx2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	23003443	3R_23003443_SNP [dm3] 3R_27177721_SNP [dm6]	A	T	7.890e^-5	0.715	INTRON Ser	TF binding site mE1_TFBS_cad
2R	8579644	2R_8579644_SNP [dm3] 2R_12692139_SNP [dm6]	C	T	8.020e^-5	0.721	NON_SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	14763396	X_14763396_INS [dm3] X_14869363_INS [dm6]	A	ATTCA	8.086e^-5	0.721	INTRON Flo2 & 1 other
3L	19937407	3L_19937407_SNP [dm3] 3L_19944307_SNP [dm6]	T	C	8.124e^-5	0.721	INTRON Ac76E
3L	15867267	3L_15867267_SNP [dm3] 3L_15874167_SNP [dm6]	T	G	8.132e^-5	0.721	INTRON pHCl
2L	7143405	2L_7143405_SNP [dm3] 2L_7143405_SNP [dm6]	G	T	8.151e^-5	0.721	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12907349	X_12907349_SNP [dm3] X_13013316_SNP [dm6]	G	T	8.385e^-5	0.733	INTRON rad
2L	14419350	2L_14419350_SNP [dm3] 2L_14419350_SNP [dm6]	T	A	8.417e^-5	0.733	INTERGENIC
X	12512271	X_12512271_SNP [dm3] X_12618238_SNP [dm6]	G	A	8.421e^-5	0.733	INTRON CG11085	TF binding site mE1_TFBS_inv
2R	10415881	2R_10415881_SNP [dm3] 2R_14528376_SNP [dm6]	T	C	8.446e^-5	0.733	INTRON ttv
3L	24264837	3L_24264837_SNP [dm3] 3L_24271737_SNP [dm6]	A	C	8.566e^-5	0.74	INTRON Snap25
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	8.653e^-5	0.744	INTRON slou
X	3337616	X_3337616_SNP [dm3] X_3443583_SNP [dm6]	T	A	8.748e^-5	0.749	INTRON CR44999 & 1 other
2R	14221079	2R_14221079_SNP [dm3] 2R_18333574_SNP [dm6]	G	C	8.792e^-5	0.75	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6608922	2L_6608922_SNP [dm3] 2L_6608922_SNP [dm6]	T	G	8.851e^-5	0.751	INTERGENIC
2L	12578644	2L_12578644_SNP [dm3] 2L_12578644_SNP [dm6]	T	C	8.885e^-5	0.751	INTERGENIC
X	3141337	X_3141337_SNP [dm3] X_3247304_SNP [dm6]	A	T	8.936e^-5	0.752	INTRON dnc
3L	12698960	3L_12698960_SNP [dm3] 3L_12705860_SNP [dm6]	C	T	8.992e^-5	0.753	INTRON mirr	TF binding site BDTNP1_TFBS_da
3L	10986873	3L_10986873_SNP [dm3] 3L_10993773_SNP [dm6]	G	A	9.058e^-5	0.755	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18871731	2R_18871731_SNP [dm3] 2R_22984208_SNP [dm6]	G	T	9.171e^-5	0.759	NON_SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad
3R	12334359	3R_12334359_SNP [dm3] 3R_16508637_SNP [dm6]	G	A	9.244e^-5	0.759	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	8576022	2R_8576022_SNP [dm3] 2R_12688517_SNP [dm6]	A	G	9.274e^-5	0.759	SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16478284	2R_16478284_SNP [dm3] 2R_20590779_SNP [dm6]	T	A	9.317e^-5	0.759	INTRON bl
X	16615046	X_16615046_SNP [dm3] X_16721013_SNP [dm6]	T	A	9.336e^-5	0.759	UPSTREAM CG32572 INTRON CG34325
3L	15133331	3L_15133331_SNP [dm3] 3L_15140231_SNP [dm6]	C	A	9.428e^-5	0.759	INTRON Pdi	TF binding site BDTNP1_TFBS_dl
X	17663890	X_17663890_SNP [dm3] X_17769857_SNP [dm6]	A	C	9.440e^-5	0.759	INTRON unc-4
2R	10415957	2R_10415957_SNP [dm3] 2R_14528452_SNP [dm6]	C	A	9.530e^-5	0.759	INTRON ttv
X	21211807	X_21211807_SNP [dm3] X_21340780_SNP [dm6]	G	A	9.562e^-5	0.759	NON_SYNONYMOUS_CODING fliI	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6757673	2R_6757673_SNP [dm3] 2R_10870168_SNP [dm6]	G	A	9.665e^-5	0.759	INTRON CG30015	TF binding site BDTNP1_TFBS_da
X	17664008	X_17664008_SNP [dm3] X_17769975_SNP [dm6]	G	A	9.667e^-5	0.759	INTRON unc-4
3L	1408950	3L_1408950_SNP [dm3] 3L_1408950_SNP [dm6]	T	C	9.681e^-5	0.759	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15528026	2R_15528026_SNP [dm3] 2R_19640521_SNP [dm6]	A	T	9.725e^-5	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15527937	2R_15527937_SNP [dm3] 2R_19640432_SNP [dm6]	C	A	9.735e^-5	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19839453	2R_19839453_SNP [dm3] 2R_23951930_SNP [dm6]	C	A	9.793e^-5	0.759	SYNONYMOUS_CODING fzr2 DOWNSTREAM CG3803 INTRON CG2970	TF binding site mE1_TFBS_chinmo
X	17664316	X_17664316_SNP [dm3] X_17770283_SNP [dm6]	A	C	9.814e^-5	0.759	INTRON unc-4
3L	9580418	3L_9580418_SNP [dm3] 3L_9587318_SNP [dm6]	C	A	9.906e^-5	0.759	NON_SYNONYMOUS_CODING CG42673 INTRON CG42673
3R	23771737	3R_23771737_SNP [dm3] 3R_27946015_SNP [dm6]	A	T	9.919e^-5	0.759	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	18993921	X_18993921_SNP [dm3] X_19099888_SNP [dm6]	T	A	9.973e^-5	0.759	INTERGENIC
2L	13457439	2L_13457439_SNP [dm3] 2L_13457439_SNP [dm6]	G	T	1.005e^-4	0.759	UPSTREAM CG42809 DOWNSTREAM CR45684 INTRON CG42784	TF binding site BDTNP1_TFBS_dl
X	12876135	X_12876135_SNP [dm3] X_12982102_SNP [dm6]	G	A	1.006e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11384799	3L_11384799_SNP [dm3] 3L_11391699_SNP [dm6]	G	A	1.007e^-4	0.759	INTERGENIC
2R	18557342	2R_18557342_SNP [dm3] 2R_22669837_SNP [dm6]	C	A	1.007e^-4	0.759	NON_SYNONYMOUS_CODING CG13516 UPSTREAM RYBP DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
3R	5912057	3R_5912057_SNP [dm3] 3R_10086335_SNP [dm6]	C	T	1.008e^-4	0.759	INTRON CR45054	TF binding site mE1_TFBS_Trl
3L	15477529	3L_15477529_SNP [dm3] 3L_15484429_SNP [dm6]	T	C	1.013e^-4	0.759	UTR_3_PRIME Ran-like
3R	19009049	3R_19009049_SNP [dm3] 3R_23183327_SNP [dm6]	A	C	1.019e^-4	0.759	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8581989	2R_8581989_SNP [dm3] 2R_12694484_SNP [dm6]	C	T	1.020e^-4	0.759	INTERGENIC
3L	5079820	3L_5079820_SNP [dm3] 3L_5079820_SNP [dm6]	T	C	1.038e^-4	0.762	UPSTREAM Con INTERGENIC
3L	10542142	3L_10542142_SNP [dm3] 3L_10549042_SNP [dm6]	T	C	1.045e^-4	0.762	INTRON A2bp1
3L	11361995	3L_11361995_SNP [dm3] 3L_11368895_SNP [dm6]	T	A	1.048e^-4	0.762	INTERGENIC
X	10137294	X_10137294_DEL [dm3] X_10243261_DEL [dm6]	TA	T	1.048e^-4	0.762	INTRON Hk
3L	12781911	3L_12781911_SNP [dm3] 3L_12788811_SNP [dm6]	G	T	1.051e^-4	0.762	INTRON Atg1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6736550	2R_6736550_SNP [dm3] 2R_10849045_SNP [dm6]	T	G	1.054e^-4	0.762	NON_SYNONYMOUS_CODING CG30015 UTR_5_PRIME CG30015	TF binding site mE1_TFBS_cad
3L	12781830	3L_12781830_DEL [dm3] 3L_12788730_DEL [dm6]	GGGACCC	T	1.056e^-4	0.762	INTRON Atg1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4793788	X_4793788_INS [dm3] X_4899755_INS [dm6]	A	ACAAA	1.061e^-4	0.762	INTRON CG42594
2L	4236069	2L_4236069_SNP [dm3] 2L_4236069_SNP [dm6]	G	A	1.061e^-4	0.762	INTERGENIC
3R	18088112	3R_18088112_SNP [dm3] 3R_22262390_SNP [dm6]	G	A	1.079e^-4	0.772	INTRON SKIP
2R	15905848	2R_15905848_SNP [dm3] 2R_20018343_SNP [dm6]	T	C	1.082e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	689571	3L_689571_SNP [dm3] 3L_689571_SNP [dm6]	C	T	1.096e^-4	0.776	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	1.096e^-4	0.776	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14374013	3L_14374013_SNP [dm3] 3L_14380913_SNP [dm6]	T	C	1.105e^-4	0.777	UPSTREAM CG43120 INTERGENIC
2R	10962104	2R_10962104_SNP [dm3] 2R_15074599_SNP [dm6]	C	A	1.111e^-4	0.777	INTERGENIC
3L	7753657	3L_7753657_SNP [dm3] 3L_7760557_SNP [dm6]	T	G	1.112e^-4	0.777	UTR_5_PRIME Hn UPSTREAM Hn
X	16594537	X_16594537_SNP [dm3] X_16700504_SNP [dm6]	G	A	1.120e^-4	0.777	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
X	935094	X_935094_SNP [dm3] X_1041061_SNP [dm6]	G	A	1.129e^-4	0.777	UTR_5_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3L	16639575	3L_16639575_SNP [dm3] 3L_16646475_SNP [dm6]	G	A	1.130e^-4	0.777	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8575699	2R_8575699_SNP [dm3] 2R_12688194_SNP [dm6]	G	C	1.132e^-4	0.777	NON_SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5860651	2L_5860651_SNP [dm3] 2L_5860651_SNP [dm6]	G	T	1.139e^-4	0.777	SYNONYMOUS_CODING rau	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	20126883	2L_20126883_SNP [dm3] 2L_20126883_SNP [dm6]	G	A	1.144e^-4	0.777	INTERGENIC
3R	23003446	3R_23003446_SNP [dm3] 3R_27177724_SNP [dm6]	A	T	1.157e^-4	0.777	INTRON Ser	TF binding site mE1_TFBS_cad
2R	18051222	2R_18051222_SNP [dm3] 2R_22163717_SNP [dm6]	A	T	1.161e^-4	0.777	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	18051226	2R_18051226_INS [dm3] 2R_22163721_INS [dm6]	A	AATCATATA	1.161e^-4	0.777	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	1453417	3L_1453417_SNP [dm3] 3L_1453417_SNP [dm6]	G	A	1.166e^-4	0.777	INTRON Ptp61F
2L	5999935	2L_5999935_SNP [dm3] 2L_5999935_SNP [dm6]	C	T	1.168e^-4	0.777	UPSTREAM Tsp26A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	12904142	X_12904142_SNP [dm3] X_13010109_SNP [dm6]	G	C	1.169e^-4	0.777	INTRON rad
2R	18050205	2R_18050205_SNP [dm3] 2R_22162700_SNP [dm6]	C	G	1.170e^-4	0.777	INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14150517	2R_14150517_SNP [dm3] 2R_18263012_SNP [dm6]	A	G	1.172e^-4	0.777	INTERGENIC
2R	17545718	2R_17545718_SNP [dm3] 2R_21658213_SNP [dm6]	T	C	1.173e^-4	0.777	UTR_5_PRIME CG10320 UPSTREAM CG10320 DOWNSTREAM CG10082 & 1 other INTRON CG10320	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10415216	2R_10415216_SNP [dm3] 2R_14527711_SNP [dm6]	T	C	1.182e^-4	0.778	SYNONYMOUS_CODING ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17663745	X_17663745_SNP [dm3] X_17769712_SNP [dm6]	G	T	1.188e^-4	0.778	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
3R	18059183	3R_18059183_SNP [dm3] 3R_22233461_SNP [dm6]	G	A	1.190e^-4	0.778	INTRON SKIP
3L	24185894	3L_24185894_SNP [dm3] 3L_24192794_SNP [dm6]	T	C	1.193e^-4	0.778	INTRON Snap25
2R	12413139	2R_12413139_SNP [dm3] 2R_16525634_SNP [dm6]	C	A	1.196e^-4	0.778	INTRON Sema-2a
3R	19009084	3R_19009084_SNP [dm3] 3R_23183362_SNP [dm6]	G	A	1.198e^-4	0.778	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	905526	2L_905526_SNP [dm3] 2L_905526_SNP [dm6]	A	T	1.202e^-4	0.778	INTERGENIC
2R	20378508	2R_20378508_SNP [dm3] 2R_24490985_SNP [dm6]	C	A	1.224e^-4	0.788	DOWNSTREAM CG13579 INTERGENIC
2R	8581505	2R_8581505_DEL [dm3] 2R_12694000_DEL [dm6]	TT	T	1.230e^-4	0.788	INTERGENIC
2R	15527991	2R_15527991_SNP [dm3] 2R_19640486_SNP [dm6]	A	C	1.239e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6442384	2R_6442384_DEL [dm3] 2R_10554879_DEL [dm6]	AGAAAA	TT	1.245e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8530641	2R_8530641_SNP [dm3] 2R_12643136_SNP [dm6]	G	C	1.246e^-4	0.788	INTRON CG8785
3L	16194115	3L_16194115_SNP [dm3] 3L_16201015_SNP [dm6]	A	G	1.250e^-4	0.788	UPSTREAM CG33690 DOWNSTREAM CG33689 INTERGENIC
2R	4525395	2R_4525395_INS [dm3] 2R_8637890_INS [dm6]	T	TAATAAT	1.250e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18433433	X_18433433_SNP [dm3] X_18539400_SNP [dm6]	C	A	1.265e^-4	0.788	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13128017	X_13128017_SNP [dm3] X_13233984_SNP [dm6]	A	G	1.273e^-4	0.788	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	24256404	3L_24256404_SNP [dm3] 3L_24263304_SNP [dm6]	C	T	1.276e^-4	0.788	INTRON Snap25
X	3141345	X_3141345_SNP [dm3] X_3247312_SNP [dm6]	G	T	1.277e^-4	0.788	INTRON dnc
X	8559489	X_8559489_SNP [dm3] X_8665456_SNP [dm6]	A	G	1.277e^-4	0.788	INTERGENIC
2L	14407851	2L_14407851_SNP [dm3] 2L_14407851_SNP [dm6]	A	G	1.308e^-4	0.788	INTRON elB
X	3337663	X_3337663_SNP [dm3] X_3443630_SNP [dm6]	G	A	1.320e^-4	0.788	INTRON CR44999 & 1 other
3L	4827393	3L_4827393_SNP [dm3] 3L_4827393_SNP [dm6]	T	C	1.321e^-4	0.788	SYNONYMOUS_CODING Aats-leu	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19292231	3R_19292231_SNP [dm3] 3R_23466509_SNP [dm6]	C	T	1.322e^-4	0.788	INTRON CG4374
X	20391902	X_20391902_SNP [dm3] X_20520875_SNP [dm6]	T	C	1.322e^-4	0.788	INTRON Tak1	TF binding site BDTNP1_TFBS_dl
2L	14566265	2L_14566265_SNP [dm3] 2L_14566265_SNP [dm6]	A	T	1.323e^-4	0.788	INTERGENIC
X	12991530	X_12991530_SNP [dm3] X_13097497_SNP [dm6]	C	A	1.328e^-4	0.788	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14374986	3L_14374986_SNP [dm3] 3L_14381886_SNP [dm6]	T	C	1.332e^-4	0.788	UPSTREAM CG43120 INTERGENIC
3R	22350171	3R_22350171_SNP [dm3] 3R_26524449_SNP [dm6]	G	T	1.333e^-4	0.788	INTRON plum
2L	16216150	2L_16216150_SNP [dm3] 2L_16216150_SNP [dm6]	A	T	1.336e^-4	0.788	DOWNSTREAM CR43840 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17664314	X_17664314_SNP [dm3] X_17770281_SNP [dm6]	A	G	1.337e^-4	0.788	INTRON unc-4
2L	6104678	2L_6104678_SNP [dm3] 2L_6104678_SNP [dm6]	A	G	1.346e^-4	0.788	INTRON stai
3R	18059354	3R_18059354_SNP [dm3] 3R_22233632_SNP [dm6]	C	G	1.347e^-4	0.788	INTRON SKIP
X	18192740	X_18192740_SNP [dm3] X_18298707_SNP [dm6]	A	T	1.348e^-4	0.788	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17663866	X_17663866_SNP [dm3] X_17769833_SNP [dm6]	C	T	1.350e^-4	0.788	INTRON unc-4
3L	10563295	3L_10563295_SNP [dm3] 3L_10570195_SNP [dm6]	T	A	1.351e^-4	0.788	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2R	7327445	2R_7327445_SNP [dm3] 2R_11439940_SNP [dm6]	T	G	1.353e^-4	0.788	INTRON CG7777
2R	10416022	2R_10416022_SNP [dm3] 2R_14528517_SNP [dm6]	A	G	1.357e^-4	0.788	INTRON ttv
3R	7592851	3R_7592851_INS [dm3] 3R_11767129_INS [dm6]	G	GGAA	1.362e^-4	0.788	UTR_3_PRIME l_3_neo38
3L	8078005	3L_8078005_SNP [dm3] 3L_8084905_SNP [dm6]	T	C	1.372e^-4	0.788	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
2L	2287718	2L_2287718_SNP [dm3] 2L_2287718_SNP [dm6]	A	T	1.373e^-4	0.788	SYNONYMOUS_CODING CG42658 UPSTREAM CG31681 DOWNSTREAM CG17237
2L	517196	2L_517196_INS [dm3] 2L_517196_INS [dm6]	A	ACACACACACCAGCAAGCA...	1.373e^-4	0.788	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	16647663	3L_16647663_SNP [dm3] 3L_16654563_SNP [dm6]	A	G	1.376e^-4	0.788	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	11368623	3L_11368623_SNP [dm3] 3L_11375523_SNP [dm6]	A	G	1.381e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10001215	3L_10001215_SNP [dm3] 3L_10008115_SNP [dm6]	G	A	1.387e^-4	0.788	INTRON dpr6
X	19118629	X_19118629_SNP [dm3] X_19224596_SNP [dm6]	G	T	1.388e^-4	0.788	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8764556	3L_8764556_SNP [dm3] 3L_8771456_SNP [dm6]	T	A	1.393e^-4	0.788	INTRON Fhos
3L	15132835	3L_15132835_SNP [dm3] 3L_15139735_SNP [dm6]	A	T	1.394e^-4	0.788	INTRON Pdi	TF binding site mE1_TFBS_cad
3L	24295096	3L_24295096_SNP [dm3] 3L_24301996_SNP [dm6]	G	A	1.395e^-4	0.788	INTERGENIC
2R	6231304	2R_6231304_SNP [dm3] 2R_10343799_SNP [dm6]	C	T	1.408e^-4	0.788	INTRON CG42732
2L	16440636	2L_16440636_SNP [dm3] 2L_16440636_SNP [dm6]	A	T	1.415e^-4	0.788	INTRON CG5888
3R	21105435	3R_21105435_SNP [dm3] 3R_25279713_SNP [dm6]	C	T	1.417e^-4	0.788	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12874799	X_12874799_SNP [dm3] X_12980766_SNP [dm6]	G	A	1.444e^-4	0.788	INTERGENIC
3R	18266491	3R_18266491_SNP [dm3] 3R_22440769_SNP [dm6]	G	A	1.444e^-4	0.788	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17542261	2L_17542261_SNP [dm3] 2L_17542261_SNP [dm6]	T	C	1.446e^-4	0.788	EXON CR43304
3R	21140387	3R_21140387_SNP [dm3] 3R_25314665_SNP [dm6]	C	T	1.447e^-4	0.788	UTR_3_PRIME CG10559 UPSTREAM CG31087
2R	8579744	2R_8579744_SNP [dm3] 2R_12692239_SNP [dm6]	A	T	1.449e^-4	0.788	NON_SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3002251	3L_3002251_SNP [dm3] 3L_3002251_SNP [dm6]	C	G	1.453e^-4	0.788	UTR_5_PRIME FMRFaR
3L	3002256	3L_3002256_INS [dm3] 3L_3002256_INS [dm6]	A	AATA	1.453e^-4	0.788	UTR_5_PRIME FMRFaR
3L	3002271	3L_3002271_SNP [dm3] 3L_3002271_SNP [dm6]	T	A	1.453e^-4	0.788	UTR_5_PRIME FMRFaR
X	14152248	X_14152248_SNP [dm3] X_14258215_SNP [dm6]	C	T	1.458e^-4	0.788	SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad
2R	6740189	2R_6740189_SNP [dm3] 2R_10852684_SNP [dm6]	T	C	1.462e^-4	0.788	UPSTREAM CR45136 INTRON CG30015
2R	6740115	2R_6740115_SNP [dm3] 2R_10852610_SNP [dm6]	T	G	1.479e^-4	0.788	UPSTREAM CR45136 INTRON CG30015
2L	22206727	2L_22206727_SNP [dm3] 2L_22206727_SNP [dm6]	A	T	1.496e^-4	0.788	INTRON Ir40a	transposable element FlyBase
3R	22228918	3R_22228918_SNP [dm3] 3R_26403196_SNP [dm6]	A	G	1.496e^-4	0.788	INTRON ppk15
2R	18051502	2R_18051502_SNP [dm3] 2R_22163997_SNP [dm6]	G	T	1.499e^-4	0.788	NON_SYNONYMOUS_CODING CG34206 INTRON a
3L	689481	3L_689481_SNP [dm3] 3L_689481_SNP [dm6]	C	T	1.508e^-4	0.788	SYNONYMOUS_CODING CG32483	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10522836	3L_10522836_SNP [dm3] 3L_10529736_SNP [dm6]	C	T	1.514e^-4	0.788	INTRON A2bp1
2L	13113342	2L_13113342_SNP [dm3] 2L_13113342_SNP [dm6]	G	A	1.521e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	5726169	2L_5726169_SNP [dm3] 2L_5726169_SNP [dm6]	G	T	1.523e^-4	0.788	DOWNSTREAM CG14006 INTRON CG11030
3R	17628229	3R_17628229_SNP [dm3] 3R_21802507_SNP [dm6]	C	T	1.534e^-4	0.788	INTRON CASK	TF binding site BDTNP1_TFBS_twi
3R	9294472	3R_9294472_INS [dm3] 3R_13468750_INS [dm6]	A	AA	1.541e^-4	0.788	INTERGENIC
2L	14326497	2L_14326497_SNP [dm3] 2L_14326497_SNP [dm6]	G	C	1.553e^-4	0.788	SYNONYMOUS_CODING wb DOWNSTREAM wb
2L	4206546	2L_4206546_SNP [dm3] 2L_4206546_SNP [dm6]	A	T	1.554e^-4	0.788	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12695072	3L_12695072_SNP [dm3] 3L_12701972_SNP [dm6]	A	G	1.564e^-4	0.788	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18090618	3R_18090618_SNP [dm3] 3R_22264896_SNP [dm6]	T	G	1.564e^-4	0.788	INTRON SKIP
2L	3282240	2L_3282240_SNP [dm3] 2L_3282240_SNP [dm6]	C	G	1.577e^-4	0.788	INTERGENIC
3R	7565253	3R_7565253_SNP [dm3] 3R_11739531_SNP [dm6]	G	C	1.577e^-4	0.788	NON_SYNONYMOUS_CODING Blm
2R	15195564	2R_15195564_SNP [dm3] 2R_19308059_SNP [dm6]	A	T	1.578e^-4	0.788	UTR_3_PRIME EndoB DOWNSTREAM CG7461
2L	10592611	2L_10592611_SNP [dm3] 2L_10592611_SNP [dm6]	A	T	1.590e^-4	0.788	INTRON Trim9
3L	15477498	3L_15477498_SNP [dm3] 3L_15484398_SNP [dm6]	A	G	1.591e^-4	0.788	UTR_3_PRIME Ran-like
2L	14708671	2L_14708671_SNP [dm3] 2L_14708671_SNP [dm6]	G	A	1.593e^-4	0.788	INTERGENIC
2R	4690579	2R_4690579_SNP [dm3] 2R_8803074_SNP [dm6]	C	T	1.608e^-4	0.788	INTRON sns	TF binding site BDTNP1_TFBS_twi
2L	905969	2L_905969_SNP [dm3] 2L_905969_SNP [dm6]	G	A	1.610e^-4	0.788	INTERGENIC
3L	19515108	3L_19515108_SNP [dm3] 3L_19522008_SNP [dm6]	C	T	1.611e^-4	0.788	INTRON Cpr76Bc
2R	10695531	2R_10695531_SNP [dm3] 2R_14808026_SNP [dm6]	A	G	1.612e^-4	0.788	UPSTREAM kn & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	3976224	2R_3976224_SNP [dm3] 2R_8088719_SNP [dm6]	C	A	1.617e^-4	0.788	NON_SYNONYMOUS_CODING sut2 UPSTREAM sut3	TF binding site mE1_TFBS_inv
X	11741740	X_11741740_DEL [dm3] X_11847707_DEL [dm6]	ACGATTCA	A	1.623e^-4	0.788	INTERGENIC
X	3716487	X_3716487_SNP [dm3] X_3822454_SNP [dm6]	T	A	1.636e^-4	0.788	INTRON ec	TF binding site mE1_TFBS_HSA
2L	1823487	2L_1823487_SNP [dm3] 2L_1823487_SNP [dm6]	A	G	1.638e^-4	0.788	UPSTREAM CG31933 DOWNSTREAM CG31664 INTERGENIC
2R	8581030	2R_8581030_SNP [dm3] 2R_12693525_SNP [dm6]	T	C	1.643e^-4	0.788	UPSTREAM CG8768 INTERGENIC
3L	23524138	3L_23524138_SNP [dm3] 3L_23531038_SNP [dm6]	G	C	1.644e^-4	0.788	INTERGENIC	transposable element FlyBase
3L	15052326	3L_15052326_DEL [dm3] 3L_15059226_DEL [dm6]	TCAT	T	1.645e^-4	0.788	INTRON Sytbeta
3L	11384801	3L_11384801_SNP [dm3] 3L_11391701_SNP [dm6]	A	G	1.646e^-4	0.788	INTERGENIC
3L	15135407	3L_15135407_SNP [dm3] 3L_15142307_SNP [dm6]	G	A	1.649e^-4	0.788	SYNONYMOUS_CODING Pdi DOWNSTREAM CG32147 EXON CR45396	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	905519	2L_905519_SNP [dm3] 2L_905519_SNP [dm6]	T	A	1.652e^-4	0.788	INTERGENIC
X	16594534	X_16594534_SNP [dm3] X_16700501_SNP [dm6]	A	G	1.655e^-4	0.788	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
3R	26490071	3R_26490071_SNP [dm3] 3R_30664349_SNP [dm6]	A	G	1.659e^-4	0.788	UPSTREAM CR45191 INTERGENIC
3R	24513683	3R_24513683_SNP [dm3] 3R_28687961_SNP [dm6]	G	A	1.659e^-4	0.788	INTRON CG9990
3R	15279967	3R_15279967_SNP [dm3] 3R_19454245_SNP [dm6]	A	C	1.660e^-4	0.788	SYNONYMOUS_CODING CG31221
3R	18090649	3R_18090649_SNP [dm3] 3R_22264927_SNP [dm6]	C	T	1.660e^-4	0.788	INTRON SKIP
2R	6231303	2R_6231303_SNP [dm3] 2R_10343798_SNP [dm6]	C	T	1.661e^-4	0.788	INTRON CG42732
2R	7327444	2R_7327444_SNP [dm3] 2R_11439939_SNP [dm6]	A	T	1.665e^-4	0.788	INTRON CG7777
3L	17204293	3L_17204293_SNP [dm3] 3L_17211193_SNP [dm6]	G	C	1.673e^-4	0.788	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl
3L	14907401	3L_14907401_SNP [dm3] 3L_14914301_SNP [dm6]	T	C	1.676e^-4	0.788	INTRON DCX-EMAP
2L	17542321	2L_17542321_SNP [dm3] 2L_17542321_SNP [dm6]	A	C	1.678e^-4	0.788	EXON CR43304
2R	9686512	2R_9686512_SNP [dm3] 2R_13799007_SNP [dm6]	C	T	1.681e^-4	0.788	INTRON Cpr50Cb
2L	6003786	2L_6003786_SNP [dm3] 2L_6003786_SNP [dm6]	C	T	1.684e^-4	0.788	SYNONYMOUS_CODING Gal UPSTREAM CR43866 DOWNSTREAM Tsp26A	TF binding site mE1_TFBS_cad
3R	22896284	3R_22896284_SNP [dm3] 3R_27070562_SNP [dm6]	T	C	1.687e^-4	0.788	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	626365	2R_626365_SNP [dm3] 2R_4738860_SNP [dm6]	T	G	1.697e^-4	0.788	INTERGENIC
3L	9482642	3L_9482642_SNP [dm3] 3L_9489542_SNP [dm6]	T	G	1.700e^-4	0.788	UTR_3_PRIME CG32037 UPSTREAM CG32036 DOWNSTREAM CG32037
X	4272464	X_4272464_SNP [dm3] X_4378431_SNP [dm6]	A	G	1.704e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26485866	3R_26485866_SNP [dm3] 3R_30660144_SNP [dm6]	A	C	1.707e^-4	0.788	INTERGENIC
2R	16546477	2R_16546477_SNP [dm3] 2R_20658972_SNP [dm6]	C	T	1.715e^-4	0.788	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16639348	3L_16639348_SNP [dm3] 3L_16646248_SNP [dm6]	G	A	1.717e^-4	0.788	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12875113	X_12875113_SNP [dm3] X_12981080_SNP [dm6]	A	G	1.721e^-4	0.788	INTERGENIC
3L	1263766	3L_1263766_SNP [dm3] 3L_1263766_SNP [dm6]	A	T	1.723e^-4	0.788	INTRON CG9134
2L	20430751	2L_20430751_SNP [dm3] 2L_20430751_SNP [dm6]	C	G	1.723e^-4	0.788	INTRON CG31688
2L	4230435	2L_4230435_SNP [dm3] 2L_4230435_SNP [dm6]	T	A	1.726e^-4	0.788	DOWNSTREAM CR44608 INTERGENIC
2R	10865314	2R_10865314_SNP [dm3] 2R_14977809_SNP [dm6]	C	G	1.728e^-4	0.788	SYNONYMOUS_CODING ckn INTRON ckn
2R	17763867	2R_17763867_SNP [dm3] 2R_21876362_SNP [dm6]	G	A	1.736e^-4	0.788	INTRON Fili	TF binding site mE1_TFBS_HSA
2L	2287909	2L_2287909_SNP [dm3] 2L_2287909_SNP [dm6]	G	A	1.743e^-4	0.788	SYNONYMOUS_CODING CG42658 DOWNSTREAM CG17237
X	17132311	X_17132311_SNP [dm3] X_17238278_SNP [dm6]	T	C	1.753e^-4	0.788	INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10213337	X_10213337_SNP [dm3] X_10319304_SNP [dm6]	A	G	1.755e^-4	0.788	INTRON alpha-Man-I
3R	11143683	3R_11143683_SNP [dm3] 3R_15317961_SNP [dm6]	G	T	1.765e^-4	0.788	SYNONYMOUS_CODING CG14866 DOWNSTREAM CG6276	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16198100	2R_16198100_SNP [dm3] 2R_20310595_SNP [dm6]	G	A	1.770e^-4	0.788	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8582075	2R_8582075_SNP [dm3] 2R_12694570_SNP [dm6]	T	C	1.771e^-4	0.788	INTERGENIC
2R	11079696	2R_11079696_SNP [dm3] 2R_15192191_SNP [dm6]	T	C	1.771e^-4	0.788	DOWNSTREAM Sfp51E INTERGENIC
2R	4075395	2R_4075395_SNP [dm3] 2R_8187890_SNP [dm6]	G	T	1.774e^-4	0.788	INTRON LRP1
3L	13939831	3L_13939831_SNP [dm3] 3L_13946731_SNP [dm6]	A	G	1.776e^-4	0.788	INTRON CG32137
2R	635400	2R_635400_SNP [dm3] 2R_4747895_SNP [dm6]	C	G	1.776e^-4	0.788	INTRON conu
3R	17375670	3R_17375670_SNP [dm3] 3R_21549948_SNP [dm6]	C	T	1.782e^-4	0.788	INTRON slou
3L	17204290	3L_17204290_SNP [dm3] 3L_17211190_SNP [dm6]	A	T	1.789e^-4	0.788	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl
3R	20611676	3R_20611676_SNP [dm3] 3R_24785954_SNP [dm6]	T	C	1.789e^-4	0.788	INTRON CG5805	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15193067	2R_15193067_SNP [dm3] 2R_19305562_SNP [dm6]	G	C	1.797e^-4	0.788	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	4652889	3L_4652889_SNP [dm3] 3L_4652889_SNP [dm6]	C	A	1.807e^-4	0.788	INTRON axo
2R	4013508	2R_4013508_SNP [dm3] 2R_8126003_SNP [dm6]	G	A	1.810e^-4	0.788	NON_SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	13712573	3R_13712573_SNP [dm3] 3R_17886851_SNP [dm6]	A	T	1.813e^-4	0.788	INTRON Rim
3R	18350974	3R_18350974_SNP [dm3] 3R_22525252_SNP [dm6]	T	C	1.820e^-4	0.788	INTRON CG5346
2R	16198113	2R_16198113_SNP [dm3] 2R_20310608_SNP [dm6]	C	G	1.821e^-4	0.788	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17663978	X_17663978_SNP [dm3] X_17769945_SNP [dm6]	A	C	1.822e^-4	0.788	INTRON unc-4
2R	13858817	2R_13858817_INS [dm3] 2R_17971312_INS [dm6]	T	TGT	1.829e^-4	0.788	INTERGENIC
3L	2269444	3L_2269444_SNP [dm3] 3L_2269444_SNP [dm6]	G	A	1.834e^-4	0.788	NON_SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9964750	3L_9964750_SNP [dm3] 3L_9971650_SNP [dm6]	G	T	1.839e^-4	0.788	UPSTREAM vnc & 1 other DOWNSTREAM Nc INTRON CG6674	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8695949	2L_8695949_SNP [dm3] 2L_8695949_SNP [dm6]	G	C	1.840e^-4	0.788	INTRON Hnf4
3R	19292177	3R_19292177_SNP [dm3] 3R_23466455_SNP [dm6]	T	A	1.843e^-4	0.788	INTRON CG4374
2R	7508687	2R_7508687_SNP [dm3] 2R_11621182_SNP [dm6]	G	A	1.850e^-4	0.788	NON_SYNONYMOUS_CODING CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22228917	3R_22228917_SNP [dm3] 3R_26403195_SNP [dm6]	A	C	1.858e^-4	0.788	INTRON ppk15
2L	9281645	2L_9281645_INS [dm3] 2L_9281645_INS [dm6]	T	TAAATA	1.860e^-4	0.788	INTRON Ggamma30A
2R	6703416	2R_6703416_SNP [dm3] 2R_10815911_SNP [dm6]	G	T	1.868e^-4	0.788	DOWNSTREAM dgo & 1 other INTERGENIC
X	11741735	X_11741735_SNP [dm3] X_11847702_SNP [dm6]	T	G	1.870e^-4	0.788	INTERGENIC
2L	15798953	2L_15798953_SNP [dm3] 2L_15798953_SNP [dm6]	T	G	1.872e^-4	0.788	INTERGENIC
2L	3839090	2L_3839090_SNP [dm3] 2L_3839090_SNP [dm6]	A	C	1.875e^-4	0.788	UTR_3_PRIME slp2
3L	10522779	3L_10522779_SNP [dm3] 3L_10529679_SNP [dm6]	G	C	1.876e^-4	0.788	INTRON A2bp1
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	1.879e^-4	0.788	INTRON sick
3R	13416585	3R_13416585_SNP [dm3] 3R_17590863_SNP [dm6]	T	G	1.880e^-4	0.788	INTERGENIC
2R	10544301	2R_10544301_SNP [dm3] 2R_14656796_SNP [dm6]	G	A	1.886e^-4	0.788	DOWNSTREAM Adgf-E INTERGENIC
X	3141302	X_3141302_SNP [dm3] X_3247269_SNP [dm6]	G	T	1.893e^-4	0.788	INTRON dnc
2R	20274305	2R_20274305_SNP [dm3] 2R_24386782_SNP [dm6]	C	T	1.900e^-4	0.788	INTRON mAChR-A
2L	5726945	2L_5726945_SNP [dm3] 2L_5726945_SNP [dm6]	C	A	1.909e^-4	0.788	UTR_3_PRIME CG14006 DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_chinmo
2R	15432935	2R_15432935_SNP [dm3] 2R_19545430_SNP [dm6]	C	A	1.933e^-4	0.788	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18090610	3R_18090610_SNP [dm3] 3R_22264888_SNP [dm6]	A	G	1.938e^-4	0.788	INTRON SKIP
3R	17626836	3R_17626836_SNP [dm3] 3R_21801114_SNP [dm6]	C	T	1.938e^-4	0.788	INTRON CASK
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	1.942e^-4	0.788	INTRON AGO3	transposable element FlyBase
2R	6745448	2R_6745448_SNP [dm3] 2R_10857943_SNP [dm6]	A	G	1.967e^-4	0.788	INTRON CG30015
X	9236542	X_9236542_SNP [dm3] X_9342509_SNP [dm6]	C	T	1.967e^-4	0.788	INTRON CG34449
3R	26496285	3R_26496285_SNP [dm3] 3R_30670563_SNP [dm6]	G	A	1.968e^-4	0.788	INTERGENIC
3R	5154668	3R_5154668_SNP [dm3] 3R_9328946_SNP [dm6]	C	A	1.968e^-4	0.788	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	19118631	X_19118631_INS [dm3] X_19224598_INS [dm6]	G	GT	1.972e^-4	0.788	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17542308	2L_17542308_SNP [dm3] 2L_17542308_SNP [dm6]	T	C	1.974e^-4	0.788	EXON CR43304
X	17663872	X_17663872_SNP [dm3] X_17769839_SNP [dm6]	G	T	1.974e^-4	0.788	INTRON unc-4
3L	16639362	3L_16639362_SNP [dm3] 3L_16646262_SNP [dm6]	G	A	1.975e^-4	0.788	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21296033	2L_21296033_SNP [dm3] 2L_21296033_SNP [dm6]	T	A	1.982e^-4	0.788	UPSTREAM Gr39a INTRON Mio & 1 other	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
X	10137287	X_10137287_SNP [dm3] X_10243254_SNP [dm6]	A	C	1.987e^-4	0.788	INTRON Hk
X	10137309	X_10137309_SNP [dm3] X_10243276_SNP [dm6]	T	A	1.987e^-4	0.788	INTRON Hk
3R	5910591	3R_5910591_SNP [dm3] 3R_10084869_SNP [dm6]	G	A	1.994e^-4	0.788	INTRON CR45054	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15863957	2L_15863957_SNP [dm3] 2L_15863957_SNP [dm6]	G	C	2.005e^-4	0.788	DOWNSTREAM CR42791 & 1 other INTERGENIC
2R	14957436	2R_14957436_SNP [dm3] 2R_19069931_SNP [dm6]	A	G	2.008e^-4	0.788	INTRON 5-HT1A
3R	19009096	3R_19009096_SNP [dm3] 3R_23183374_SNP [dm6]	T	C	2.010e^-4	0.788	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12444626	3L_12444626_SNP [dm3] 3L_12451526_SNP [dm6]	T	G	2.012e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11120080	3L_11120080_SNP [dm3] 3L_11126980_SNP [dm6]	T	A	2.018e^-4	0.788	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	11120078	3L_11120078_SNP [dm3] 3L_11126978_SNP [dm6]	C	G	2.019e^-4	0.788	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	3734982	X_3734982_SNP [dm3] X_3840949_SNP [dm6]	G	T	2.026e^-4	0.788	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3L	8629515	3L_8629515_SNP [dm3] 3L_8636415_SNP [dm6]	C	T	2.026e^-4	0.788	INTRON Zasp66	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18064857	3R_18064857_SNP [dm3] 3R_22239135_SNP [dm6]	C	G	2.028e^-4	0.788	INTRON SKIP
X	2764882	X_2764882_SNP [dm3] X_2870849_SNP [dm6]	C	T	2.029e^-4	0.788	INTRON kirre
3R	18371293	3R_18371293_SNP [dm3] 3R_22545571_SNP [dm6]	A	G	2.030e^-4	0.788	INTRON AdipoR
2R	18868243	2R_18868243_SNP [dm3] 2R_22980720_SNP [dm6]	G	A	2.032e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8490311	2R_8490311_SNP [dm3] 2R_12602806_SNP [dm6]	T	G	2.037e^-4	0.788	INTRON Amph
X	6489687	X_6489687_SNP [dm3] X_6595654_SNP [dm6]	T	C	2.038e^-4	0.788	NON_SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18051221	2R_18051221_SNP [dm3] 2R_22163716_SNP [dm6]	G	A	2.040e^-4	0.788	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	18051228	2R_18051228_SNP [dm3] 2R_22163723_SNP [dm6]	A	T	2.040e^-4	0.788	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2L	12056080	2L_12056080_SNP [dm3] 2L_12056080_SNP [dm6]	A	G	2.049e^-4	0.788	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	21140378	3R_21140378_DEL [dm3] 3R_25314656_DEL [dm6]	AA	A	2.057e^-4	0.788	UTR_3_PRIME CG10559 UPSTREAM CG31087
3R	21140385	3R_21140385_INS [dm3] 3R_25314663_INS [dm6]	A	ATATTCATCAAAAAAAGTGC...	2.057e^-4	0.788	UTR_3_PRIME CG10559 UPSTREAM CG31087
3L	424774	3L_424774_SNP [dm3] 3L_424774_SNP [dm6]	G	C	2.064e^-4	0.788	INTERGENIC
2L	10076531	2L_10076531_SNP [dm3] 2L_10076531_SNP [dm6]	A	G	2.071e^-4	0.788	INTRON CG44153
X	5260661	X_5260661_SNP [dm3] X_5366628_SNP [dm6]	T	C	2.072e^-4	0.788	INTRON SK
3R	17537101	3R_17537101_SNP [dm3] 3R_21711379_SNP [dm6]	A	G	2.078e^-4	0.788	INTRON CG31176
2R	14957457	2R_14957457_SNP [dm3] 2R_19069952_SNP [dm6]	T	A	2.084e^-4	0.788	INTRON 5-HT1A
2R	19260404	2R_19260404_SNP [dm3] 2R_23372881_SNP [dm6]	C	T	2.084e^-4	0.788	NON_SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15865896	3L_15865896_DEL [dm3] 3L_15872796_DEL [dm6]	CTCAC	C	2.085e^-4	0.788	INTRON pHCl
2R	18051224	2R_18051224_SNP [dm3] 2R_22163719_SNP [dm6]	G	C	2.091e^-4	0.788	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2L	9280177	2L_9280177_SNP [dm3] 2L_9280177_SNP [dm6]	A	G	2.095e^-4	0.788	INTRON Ggamma30A
X	3716531	X_3716531_SNP [dm3] X_3822498_SNP [dm6]	G	C	2.101e^-4	0.788	INTRON ec	TF binding site mE1_TFBS_HSA
2L	5575103	2L_5575103_SNP [dm3] 2L_5575103_SNP [dm6]	A	G	2.102e^-4	0.788	INTERGENIC
2L	19780125	2L_19780125_SNP [dm3] 2L_19780125_SNP [dm6]	G	A	2.103e^-4	0.788	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5948949	2L_5948949_SNP [dm3] 2L_5948949_SNP [dm6]	T	A	2.105e^-4	0.788	UTR_3_PRIME Gpdh UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	6811965	2L_6811965_SNP [dm3] 2L_6811965_SNP [dm6]	G	A	2.123e^-4	0.788	UPSTREAM CR44081 INTERGENIC
2R	8577685	2R_8577685_SNP [dm3] 2R_12690180_SNP [dm6]	G	A	2.124e^-4	0.788	SYNONYMOUS_CODING Obp49a UPSTREAM CG30053
2R	9744037	2R_9744037_SNP [dm3] 2R_13856532_SNP [dm6]	A	C	2.130e^-4	0.788	UPSTREAM CG6553 DOWNSTREAM CR44367 INTRON tum	TF binding site mE1_TFBS_cad
X	15121261	X_15121261_SNP [dm3] X_15227228_SNP [dm6]	T	C	2.130e^-4	0.788	DOWNSTREAM CR44430 INTERGENIC
2L	8538561	2L_8538561_SNP [dm3] 2L_8538561_SNP [dm6]	C	G	2.144e^-4	0.788	DOWNSTREAM CG17834 INTRON CG17834
3L	12947254	3L_12947254_SNP [dm3] 3L_12954154_SNP [dm6]	A	C	2.154e^-4	0.788	SYNONYMOUS_CODING CG10752	TF binding site mE1_TFBS_HSA
2R	18051233	2R_18051233_INS [dm3] 2R_22163728_INS [dm6]	T	TATAGTATAGTAT...	2.160e^-4	0.788	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	9943036	3L_9943036_SNP [dm3] 3L_9949936_SNP [dm6]	G	A	2.166e^-4	0.788	INTRON CG34356
3L	11196235	3L_11196235_SNP [dm3] 3L_11203135_SNP [dm6]	C	T	2.169e^-4	0.788	SYNONYMOUS_CODING Plod DOWNSTREAM CG14141
X	3141365	X_3141365_SNP [dm3] X_3247332_SNP [dm6]	T	C	2.172e^-4	0.788	INTRON dnc
2R	12572919	2R_12572919_SNP [dm3] 2R_16685414_SNP [dm6]	A	G	2.181e^-4	0.788	INTRON CG30463	TF binding site mE1_TFBS_HSA
X	17664529	X_17664529_SNP [dm3] X_17770496_SNP [dm6]	A	C	2.182e^-4	0.788	INTRON unc-4
3L	9491899	3L_9491899_SNP [dm3] 3L_9498799_SNP [dm6]	T	C	2.184e^-4	0.788	INTRON path
2R	14220291	2R_14220291_SNP [dm3] 2R_18332786_SNP [dm6]	G	A	2.191e^-4	0.788	INTRON sbb	TF binding site mE1_TFBS_run
2R	14833530	2R_14833530_SNP [dm3] 2R_18946025_SNP [dm6]	C	A	2.193e^-4	0.788	INTRON sano	TF binding site mE1_TFBS_cad
2L	794250	2L_794250_SNP [dm3] 2L_794250_SNP [dm6]	A	T	2.205e^-4	0.788	INTERGENIC
3L	15742217	3L_15742217_SNP [dm3] 3L_15749117_SNP [dm6]	T	C	2.209e^-4	0.788	DOWNSTREAM CR45240 INTERGENIC
3L	7003222	3L_7003222_SNP [dm3] 3L_7010122_SNP [dm6]	C	G	2.215e^-4	0.788	INTRON Mp
2R	8578936	2R_8578936_INS [dm3] 2R_12691431_INS [dm6]	C	CC	2.221e^-4	0.788	UTR_3_PRIME CG8768 UPSTREAM Obp49a
3R	25505315	3R_25505315_SNP [dm3] 3R_29679593_SNP [dm6]	C	G	2.221e^-4	0.788	SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	625892	2R_625892_SNP [dm3] 2R_4738387_SNP [dm6]	G	A	2.229e^-4	0.788	INTERGENIC	transposable element FlyBase
3R	24504605	3R_24504605_SNP [dm3] 3R_28678883_SNP [dm6]	T	C	2.231e^-4	0.788	INTRON CG9990
2R	582587	2R_582587_SNP [dm3] 2R_4695082_SNP [dm6]	G	C	2.239e^-4	0.788	INTRON Nipped-B
3R	7760597	3R_7760597_SNP [dm3] 3R_11934875_SNP [dm6]	A	C	2.244e^-4	0.788	INTRON Cad87A
2R	16198086	2R_16198086_SNP [dm3] 2R_20310581_SNP [dm6]	A	G	2.246e^-4	0.788	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8826092	3L_8826092_SNP [dm3] 3L_8832992_SNP [dm6]	C	T	2.247e^-4	0.788	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	2.249e^-4	0.788	INTRON sls
3L	6912982	3L_6912982_SNP [dm3] 3L_6919882_SNP [dm6]	A	T	2.252e^-4	0.788	INTERGENIC
2L	9302733	2L_9302733_SNP [dm3] 2L_9302733_SNP [dm6]	A	T	2.254e^-4	0.788	DOWNSTREAM Ggamma30A INTERGENIC
2L	8024202	2L_8024202_SNP [dm3] 2L_8024202_SNP [dm6]	A	G	2.255e^-4	0.788	INTRON Tg	regulatory region REDfly_CRMs
2R	19976832	2R_19976832_SNP [dm3] 2R_24089309_SNP [dm6]	G	A	2.255e^-4	0.788	UTR_3_PRIME snama INTRON snama
2R	7006022	2R_7006022_SNP [dm3] 2R_11118517_SNP [dm6]	G	C	2.273e^-4	0.788	UTR_3_PRIME Cyp12d1-p
2L	6962969	2L_6962969_SNP [dm3] 2L_6962969_SNP [dm6]	T	C	2.279e^-4	0.788	SYNONYMOUS_CODING sip2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18371371	3R_18371371_SNP [dm3] 3R_22545649_SNP [dm6]	A	G	2.287e^-4	0.788	INTRON AdipoR
3L	23585316	3L_23585316_SNP [dm3] 3L_23592216_SNP [dm6]	G	C	2.289e^-4	0.788	INTRON AGO3
2R	2998487	2R_2998487_DEL [dm3] 2R_7110982_DEL [dm6]	CAACT	C	2.294e^-4	0.788	INTRON esn
2R	630869	2R_630869_SNP [dm3] 2R_4743364_SNP [dm6]	T	G	2.305e^-4	0.788	UPSTREAM conu INTERGENIC
3L	16435123	3L_16435123_SNP [dm3] 3L_16442023_SNP [dm6]	G	T	2.305e^-4	0.788	INTRON CG33158 & 1 other
X	6425207	X_6425207_SNP [dm3] X_6531174_SNP [dm6]	A	G	2.311e^-4	0.788	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other
2R	8575981	2R_8575981_SNP [dm3] 2R_12688476_SNP [dm6]	A	C	2.327e^-4	0.788	NON_SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1121960	2L_1121960_SNP [dm3] 2L_1121960_SNP [dm6]	C	T	2.333e^-4	0.788	INTRON Pino
2R	4183421	2R_4183421_SNP [dm3] 2R_8295916_SNP [dm6]	C	T	2.337e^-4	0.788	INTERGENIC
X	12876161	X_12876161_SNP [dm3] X_12982128_SNP [dm6]	A	G	2.348e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3805458	2R_3805458_SNP [dm3] 2R_7917953_SNP [dm6]	C	T	2.349e^-4	0.788	UTR_5_PRIME Cul1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	4229295	2L_4229295_SNP [dm3] 2L_4229295_SNP [dm6]	A	G	2.354e^-4	0.788	DOWNSTREAM RpL40 EXON CR44608
2R	6757609	2R_6757609_INS [dm3] 2R_10870104_INS [dm6]	T	TCT	2.355e^-4	0.788	INTRON CG30015
2L	21276952	2L_21276952_DEL [dm3] 2L_21276952_DEL [dm6]	TAACAT	T	2.356e^-4	0.788	INTRON CG8671
2R	13741136	2R_13741136_SNP [dm3] 2R_17853631_SNP [dm6]	A	T	2.362e^-4	0.788	SYNONYMOUS_CODING CG30323 INTRON olf186-F
2L	11402964	2L_11402964_DEL [dm3] 2L_11402964_DEL [dm6]	TCCGTATGGCC...	T	2.365e^-4	0.788	INTERGENIC	regulatory region REDfly_CRMs
2L	5112263	2L_5112263_SNP [dm3] 2L_5112263_SNP [dm6]	A	C	2.365e^-4	0.788	INTRON Msp300
X	12907393	X_12907393_DEL [dm3] X_13013360_DEL [dm6]	CA	G	2.373e^-4	0.788	INTRON rad
3L	7753664	3L_7753664_SNP [dm3] 3L_7760564_SNP [dm6]	A	G	2.374e^-4	0.788	UTR_5_PRIME Hn UPSTREAM Hn
2L	4300461	2L_4300461_SNP [dm3] 2L_4300461_SNP [dm6]	A	G	2.374e^-4	0.788	INTRON tutl
3L	15865439	3L_15865439_SNP [dm3] 3L_15872339_SNP [dm6]	A	G	2.375e^-4	0.788	INTRON pHCl
2R	12587416	2R_12587416_SNP [dm3] 2R_16699911_SNP [dm6]	T	A	2.376e^-4	0.788	INTRON CG30463
2R	18867000	2R_18867000_SNP [dm3] 2R_22979477_SNP [dm6]	G	A	2.378e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2269274	3L_2269274_SNP [dm3] 3L_2269274_SNP [dm6]	C	T	2.380e^-4	0.788	SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20223173	2R_20223173_SNP [dm3] 2R_24335650_SNP [dm6]	C	A	2.381e^-4	0.788	EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9579372	3L_9579372_SNP [dm3] 3L_9586272_SNP [dm6]	T	A	2.389e^-4	0.788	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10415700	2R_10415700_INS [dm3] 2R_14528195_INS [dm6]	T	TT	2.392e^-4	0.788	INTRON ttv
2R	20233597	2R_20233597_SNP [dm3] 2R_24346074_SNP [dm6]	A	G	2.395e^-4	0.788	INTRON bs
2R	6740078	2R_6740078_SNP [dm3] 2R_10852573_SNP [dm6]	A	G	2.396e^-4	0.788	UPSTREAM CR45136 INTRON CG30015
X	16594564	X_16594564_SNP [dm3] X_16700531_SNP [dm6]	A	G	2.402e^-4	0.788	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
2L	4213440	2L_4213440_SNP [dm3] 2L_4213440_SNP [dm6]	C	T	2.403e^-4	0.788	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18872757	2R_18872757_SNP [dm3] 2R_22985234_SNP [dm6]	T	C	2.406e^-4	0.788	SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other EXON mir-4939
2L	4219406	2L_4219406_SNP [dm3] 2L_4219406_SNP [dm6]	G	T	2.411e^-4	0.788	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10599658	3L_10599658_SNP [dm3] 3L_10606558_SNP [dm6]	C	T	2.412e^-4	0.788	INTERGENIC
3L	2866631	3L_2866631_SNP [dm3] 3L_2866631_SNP [dm6]	C	A	2.418e^-4	0.788	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20938395	3R_20938395_SNP [dm3] 3R_25112673_SNP [dm6]	T	C	2.425e^-4	0.788	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
2R	11654638	2R_11654638_SNP [dm3] 2R_15767133_SNP [dm6]	A	G	2.426e^-4	0.788	NON_SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	24303697	3L_24303697_SNP [dm3] 3L_24310597_SNP [dm6]	T	G	2.427e^-4	0.788	INTERGENIC
2R	18591998	2R_18591998_SNP [dm3] 2R_22704493_SNP [dm6]	G	A	2.431e^-4	0.788	UPSTREAM Obp58b & 1 other DOWNSTREAM Obp59a INTERGENIC
3L	24114167	3L_24114167_SNP [dm3] 3L_24121067_SNP [dm6]	T	G	2.434e^-4	0.788	INTRON Snap25
3R	25292551	3R_25292551_SNP [dm3] 3R_29466829_SNP [dm6]	A	G	2.435e^-4	0.788	INTRON Ptp99A
X	20234162	X_20234162_SNP [dm3] X_20363135_SNP [dm6]	C	T	2.436e^-4	0.788	INTERGENIC
2L	19928435	2L_19928435_SNP [dm3] 2L_19928435_SNP [dm6]	C	T	2.455e^-4	0.788	INTRON sick
X	16594611	X_16594611_SNP [dm3] X_16700578_SNP [dm6]	C	T	2.458e^-4	0.788	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
2R	631681	2R_631681_SNP [dm3] 2R_4744176_SNP [dm6]	T	A	2.463e^-4	0.788	UPSTREAM conu INTERGENIC
3L	16649751	3L_16649751_SNP [dm3] 3L_16656651_SNP [dm6]	C	A	2.465e^-4	0.788	INTRON Baldspot
X	16509002	X_16509002_SNP [dm3] X_16614969_SNP [dm6]	T	G	2.468e^-4	0.788	DOWNSTREAM CG9782 & 1 other INTERGENIC
3R	19837352	3R_19837352_SNP [dm3] 3R_24011630_SNP [dm6]	C	T	2.481e^-4	0.788	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
2R	16198071	2R_16198071_SNP [dm3] 2R_20310566_SNP [dm6]	C	A	2.484e^-4	0.788	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20322385	2L_20322385_SNP [dm3] 2L_20322385_SNP [dm6]	G	A	2.484e^-4	0.788	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6243980	2L_6243980_SNP [dm3] 2L_6243980_SNP [dm6]	C	G	2.485e^-4	0.788	INTERGENIC
3R	24015091	3R_24015091_SNP [dm3] 3R_28189369_SNP [dm6]	C	T	2.486e^-4	0.788	INTRON CG34354
2R	10695532	2R_10695532_SNP [dm3] 2R_14808027_SNP [dm6]	T	A	2.486e^-4	0.788	UPSTREAM kn & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	6075704	3L_6075704_SNP [dm3] 3L_6082604_SNP [dm6]	A	G	2.487e^-4	0.788	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	24059096	3L_24059096_SNP [dm3] 3L_24065996_SNP [dm6]	T	C	2.488e^-4	0.788	INTERGENIC
X	4312653	X_4312653_SNP [dm3] X_4418620_SNP [dm6]	C	A	2.492e^-4	0.788	INTRON CR32773 & 1 other
2L	5112244	2L_5112244_SNP [dm3] 2L_5112244_SNP [dm6]	C	A	2.506e^-4	0.788	INTRON Msp300
3L	7274275	3L_7274275_SNP [dm3] 3L_7281175_SNP [dm6]	G	A	2.507e^-4	0.788	INTRON unc-13-4A
3L	22948731	3L_22948731_SNP [dm3] 3L_22955631_SNP [dm6]	C	T	2.512e^-4	0.788	UPSTREAM CG32461 INTERGENIC
2R	8579727	2R_8579727_SNP [dm3] 2R_12692222_SNP [dm6]	T	A	2.516e^-4	0.788	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4229349	2L_4229349_SNP [dm3] 2L_4229349_SNP [dm6]	A	C	2.517e^-4	0.788	DOWNSTREAM RpL40 EXON CR44608
2R	11612193	2R_11612193_SNP [dm3] 2R_15724688_SNP [dm6]	A	T	2.519e^-4	0.788	INTERGENIC
3L	11999522	3L_11999522_SNP [dm3] 3L_12006422_SNP [dm6]	G	T	2.524e^-4	0.788	INTRON CG6928
3L	13793533	3L_13793533_SNP [dm3] 3L_13800433_SNP [dm6]	G	T	2.525e^-4	0.788	INTRON bru-3
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	2.528e^-4	0.788	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
2R	16909203	2R_16909203_SNP [dm3] 2R_21021698_SNP [dm6]	A	T	2.536e^-4	0.788	INTRON RIC-3
2L	17948653	2L_17948653_SNP [dm3] 2L_17948653_SNP [dm6]	G	A	2.537e^-4	0.788	EXON CR44398
3R	23939778	3R_23939778_SNP [dm3] 3R_28114056_SNP [dm6]	C	A	2.539e^-4	0.788	INTERGENIC
X	4751369	X_4751369_DEL [dm3] X_4857336_DEL [dm6]	GTTCAGAG	G	2.540e^-4	0.788	INTRON CG42594
X	17663821	X_17663821_SNP [dm3] X_17769788_SNP [dm6]	C	T	2.552e^-4	0.788	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
X	17665523	X_17665523_SNP [dm3] X_17771490_SNP [dm6]	A	G	2.553e^-4	0.788	INTRON unc-4
3L	9820143	3L_9820143_SNP [dm3] 3L_9827043_SNP [dm6]	A	G	2.558e^-4	0.788	NON_SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_cad
3L	9586792	3L_9586792_SNP [dm3] 3L_9593692_SNP [dm6]	A	G	2.560e^-4	0.788	SYNONYMOUS_CODING CG42673 INTRON CG42673	TF binding site mE1_TFBS_chinmo
2L	6477088	2L_6477088_SNP [dm3] 2L_6477088_SNP [dm6]	A	G	2.560e^-4	0.788	UPSTREAM CG9536 DOWNSTREAM Sec61alpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	6477116	2L_6477116_SNP [dm3] 2L_6477116_SNP [dm6]	G	A	2.560e^-4	0.788	UPSTREAM CG9536 DOWNSTREAM Sec61alpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	2590037	X_2590037_SNP [dm3] X_2696004_SNP [dm6]	G	A	2.562e^-4	0.788	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6075711	3L_6075711_SNP [dm3] 3L_6082611_SNP [dm6]	A	T	2.563e^-4	0.788	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	3140892	X_3140892_SNP [dm3] X_3246859_SNP [dm6]	G	C	2.567e^-4	0.788	INTRON dnc
X	3716823	X_3716823_SNP [dm3] X_3822790_SNP [dm6]	A	T	2.573e^-4	0.788	INTRON ec
X	12876152	X_12876152_SNP [dm3] X_12982119_SNP [dm6]	T	G	2.575e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4512165	3L_4512165_SNP [dm3] 3L_4512165_SNP [dm6]	C	T	2.575e^-4	0.788	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24173532	3L_24173532_SNP [dm3] 3L_24180432_SNP [dm6]	G	T	2.575e^-4	0.788	INTRON Snap25
2R	9146110	2R_9146110_SNP [dm3] 2R_13258605_SNP [dm6]	C	T	2.579e^-4	0.788	DOWNSTREAM CG10799 INTERGENIC
X	2368403	X_2368403_SNP [dm3] X_2474370_SNP [dm6]	G	A	2.581e^-4	0.788	INTRON trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9201481	X_9201481_SNP [dm3] X_9307448_SNP [dm6]	T	C	2.590e^-4	0.788	INTERGENIC
3L	5279245	3L_5279245_SNP [dm3] 3L_5286145_SNP [dm6]	A	T	2.590e^-4	0.788	INTERGENIC
X	3140872	X_3140872_DEL [dm3] X_3246839_DEL [dm6]	TCCCATTTAAAATCTCA...	T	2.603e^-4	0.788	INTRON dnc
X	15121263	X_15121263_SNP [dm3] X_15227230_SNP [dm6]	T	G	2.604e^-4	0.788	DOWNSTREAM CR44430 INTERGENIC
2R	9352516	2R_9352516_SNP [dm3] 2R_13465011_SNP [dm6]	G	T	2.607e^-4	0.788	INTRON arr	TF binding site mE1_TFBS_inv
3L	15135894	3L_15135894_SNP [dm3] 3L_15142794_SNP [dm6]	A	C	2.610e^-4	0.788	START_GAINED Pdi UTR_5_PRIME Pdi UPSTREAM Pdi DOWNSTREAM CG32147 EXON CR45396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10289568	3L_10289568_SNP [dm3] 3L_10296468_SNP [dm6]	C	T	2.616e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7565218	3R_7565218_SNP [dm3] 3R_11739496_SNP [dm6]	G	A	2.616e^-4	0.788	SYNONYMOUS_CODING Blm
3L	14188017	3L_14188017_INS [dm3] 3L_14194917_INS [dm6]	A	ACAAATTAGTA...	2.616e^-4	0.788	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23953498	3L_23953498_SNP [dm3] 3L_23960398_SNP [dm6]	T	A	2.617e^-4	0.788	INTRON CG40470
2R	8578545	2R_8578545_SNP [dm3] 2R_12691040_SNP [dm6]	C	G	2.619e^-4	0.788	UPSTREAM Obp49a DOWNSTREAM CG8768 INTERGENIC
2R	18875264	2R_18875264_DEL [dm3] 2R_22987741_DEL [dm6]	CC	C	2.622e^-4	0.788	INTRON twi
X	2591360	X_2591360_SNP [dm3] X_2697327_SNP [dm6]	G	C	2.624e^-4	0.788	INTRON CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18075602	3R_18075602_SNP [dm3] 3R_22249880_SNP [dm6]	C	A	2.624e^-4	0.788	INTRON SKIP
2R	17333114	2R_17333114_SNP [dm3] 2R_21445609_SNP [dm6]	G	C	2.627e^-4	0.788	INTRON Sdc
2R	4021533	2R_4021533_SNP [dm3] 2R_8134028_SNP [dm6]	A	G	2.628e^-4	0.788	UTR_3_PRIME Pabp2 DOWNSTREAM Obp44a & 1 other
2R	9260288	2R_9260288_SNP [dm3] 2R_13372783_SNP [dm6]	C	A	2.630e^-4	0.788	INTERGENIC
3R	19569471	3R_19569471_SNP [dm3] 3R_23743749_SNP [dm6]	A	T	2.633e^-4	0.788	INTRON Hmgcr
3R	22896269	3R_22896269_SNP [dm3] 3R_27070547_SNP [dm6]	T	C	2.648e^-4	0.788	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1436215	2L_1436215_SNP [dm3] 2L_1436215_SNP [dm6]	C	T	2.649e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5405018	2L_5405018_SNP [dm3] 2L_5405018_SNP [dm6]	A	G	2.660e^-4	0.788	NON_SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_z
2L	2303106	2L_2303106_SNP [dm3] 2L_2303106_SNP [dm6]	A	T	2.670e^-4	0.788	INTERGENIC
X	7994230	X_7994230_INS [dm3] X_8100197_INS [dm6]	A	ATGGCATCTACAGCTTGGA...	2.673e^-4	0.788	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6607806	2L_6607806_SNP [dm3] 2L_6607806_SNP [dm6]	T	C	2.674e^-4	0.788	INTERGENIC
2R	18448766	2R_18448766_SNP [dm3] 2R_22561261_SNP [dm6]	A	G	2.676e^-4	0.788	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	6388132	2L_6388132_SNP [dm3] 2L_6388132_SNP [dm6]	G	A	2.688e^-4	0.788	INTRON CG42368
X	10028090	X_10028090_DEL [dm3] X_10134057_DEL [dm6]	CCGCAGCAGCCGCAGCAACA...	C	2.698e^-4	0.788	INTRON CR44894
3L	8080844	3L_8080844_SNP [dm3] 3L_8087744_SNP [dm6]	C	T	2.716e^-4	0.788	UTR_3_PRIME CG7565 INTRON Ect4
X	7993507	X_7993507_SNP [dm3] X_8099474_SNP [dm6]	G	A	2.720e^-4	0.788	SYNONYMOUS_CODING CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3R	23900194	3R_23900194_SNP [dm3] 3R_28074472_SNP [dm6]	G	A	2.722e^-4	0.788	INTRON CG34362	TF binding site mE1_TFBS_chinmo
3R	6974649	3R_6974649_SNP [dm3] 3R_11148927_SNP [dm6]	A	T	2.732e^-4	0.788	INTERGENIC
2L	9938036	2L_9938036_SNP [dm3] 2L_9938036_SNP [dm6]	C	T	2.738e^-4	0.788	UTR_5_PRIME CG31712 UPSTREAM CG4619 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	24286637	3L_24286637_SNP [dm3] 3L_24293537_SNP [dm6]	C	T	2.740e^-4	0.788	INTRON Snap25
2R	10415942	2R_10415942_SNP [dm3] 2R_14528437_SNP [dm6]	C	T	2.746e^-4	0.788	INTRON ttv
2L	965510	2L_965510_SNP [dm3] 2L_965510_SNP [dm6]	C	T	2.746e^-4	0.788	INTERGENIC
2L	1385844	2L_1385844_SNP [dm3] 2L_1385844_SNP [dm6]	C	A	2.751e^-4	0.788	INTRON lea
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	2.752e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	636666	2R_636666_SNP [dm3] 2R_4749161_SNP [dm6]	A	T	2.752e^-4	0.788	UPSTREAM conu INTRON conu
2L	14418478	2L_14418478_SNP [dm3] 2L_14418478_SNP [dm6]	G	A	2.753e^-4	0.788	INTERGENIC
X	19118691	X_19118691_SNP [dm3] X_19224658_SNP [dm6]	G	A	2.757e^-4	0.788	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10522833	3L_10522833_SNP [dm3] 3L_10529733_SNP [dm6]	C	T	2.770e^-4	0.788	INTRON A2bp1
2L	6477111	2L_6477111_DEL [dm3] 2L_6477111_DEL [dm6]	AAA	A	2.780e^-4	0.788	UPSTREAM CG9536 DOWNSTREAM Sec61alpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	10415950	2R_10415950_SNP [dm3] 2R_14528445_SNP [dm6]	T	A	2.782e^-4	0.788	INTRON ttv
3L	24051946	3L_24051946_SNP [dm3] 3L_24058846_SNP [dm6]	T	A	2.785e^-4	0.788	INTERGENIC
2L	10155413	2L_10155413_SNP [dm3] 2L_10155413_SNP [dm6]	A	T	2.788e^-4	0.788	UTR_3_PRIME CG4839 INTRON CG44153
3L	4652884	3L_4652884_SNP [dm3] 3L_4652884_SNP [dm6]	G	A	2.788e^-4	0.788	INTRON axo
2L	6607825	2L_6607825_SNP [dm3] 2L_6607825_SNP [dm6]	T	C	2.789e^-4	0.788	INTERGENIC
2L	6607841	2L_6607841_SNP [dm3] 2L_6607841_SNP [dm6]	T	C	2.789e^-4	0.788	INTERGENIC
X	9287237	X_9287237_SNP [dm3] X_9393204_SNP [dm6]	C	G	2.795e^-4	0.788	INTRON mgl
2L	16224660	2L_16224660_SNP [dm3] 2L_16224660_SNP [dm6]	A	G	2.795e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10084073	3L_10084073_SNP [dm3] 3L_10090973_SNP [dm6]	T	C	2.797e^-4	0.788	SYNONYMOUS_CODING CG32053 INTRON dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25153742	3R_25153742_DEL [dm3] 3R_29328020_DEL [dm6]	TT	T	2.813e^-4	0.788	INTERGENIC
X	9063374	X_9063374_SNP [dm3] X_9169341_SNP [dm6]	T	G	2.821e^-4	0.788	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25845124	3R_25845124_SNP [dm3] 3R_30019402_SNP [dm6]	G	A	2.823e^-4	0.788	SYNONYMOUS_CODING Mgat2
3R	9352604	3R_9352604_SNP [dm3] 3R_13526882_SNP [dm6]	C	T	2.835e^-4	0.788	INTERGENIC
X	4340896	X_4340896_SNP [dm3] X_4446863_SNP [dm6]	T	C	2.838e^-4	0.788	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
X	14763061	X_14763061_SNP [dm3] X_14869028_SNP [dm6]	T	C	2.841e^-4	0.788	INTRON Flo2 & 1 other
3R	7776359	3R_7776359_SNP [dm3] 3R_11950637_SNP [dm6]	A	C	2.847e^-4	0.788	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23776803	3L_23776803_SNP [dm3] 3L_23783703_SNP [dm6]	A	T	2.849e^-4	0.788	UPSTREAM CG43968 INTERGENIC
3L	24290915	3L_24290915_SNP [dm3] 3L_24297815_SNP [dm6]	C	A	2.858e^-4	0.788	UTR_3_PRIME Snap25	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	15852386	3L_15852386_SNP [dm3] 3L_15859286_SNP [dm6]	G	T	2.863e^-4	0.788	INTRON pHCl
2R	6703418	2R_6703418_SNP [dm3] 2R_10815913_SNP [dm6]	A	G	2.869e^-4	0.788	DOWNSTREAM dgo & 1 other INTERGENIC
3L	10210311	3L_10210311_SNP [dm3] 3L_10217211_SNP [dm6]	C	T	2.872e^-4	0.788	DOWNSTREAM CG8065 INTERGENIC
X	12622811	X_12622811_DEL [dm3] X_12728778_DEL [dm6]	CAC	C	2.873e^-4	0.788	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11610104	2R_11610104_SNP [dm3] 2R_15722599_SNP [dm6]	G	A	2.873e^-4	0.788	INTERGENIC
3L	24329145	3L_24329145_SNP [dm3] 3L_24336045_SNP [dm6]	C	A	2.875e^-4	0.788	INTRON nvd
2L	20021154	2L_20021154_SNP [dm3] 2L_20021154_SNP [dm6]	C	T	2.876e^-4	0.788	INTERGENIC
2R	3464501	2R_3464501_SNP [dm3] 2R_7576996_SNP [dm6]	T	C	2.878e^-4	0.788	SYNONYMOUS_CODING Vps13
2R	10043783	2R_10043783_SNP [dm3] 2R_14156278_SNP [dm6]	A	C	2.880e^-4	0.788	SYNONYMOUS_CODING pea DOWNSTREAM CG13018	TF binding site mE1_TFBS_sens
X	10802300	X_10802300_SNP [dm3] X_10908267_SNP [dm6]	G	A	2.890e^-4	0.788	SYNONYMOUS_CODING CG43901	TF binding site mE1_TFBS_sens
X	5444130	X_5444130_SNP [dm3] X_5550097_SNP [dm6]	T	C	2.900e^-4	0.788	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	4882512	3L_4882512_SNP [dm3] 3L_4882512_SNP [dm6]	T	C	2.904e^-4	0.788	SYNONYMOUS_CODING CG17150
2L	9281592	2L_9281592_SNP [dm3] 2L_9281592_SNP [dm6]	G	A	2.905e^-4	0.788	INTRON Ggamma30A
3R	23771772	3R_23771772_SNP [dm3] 3R_27946050_SNP [dm6]	G	A	2.910e^-4	0.788	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	9511050	2L_9511050_SNP [dm3] 2L_9511050_SNP [dm6]	A	T	2.916e^-4	0.788	INTRON CG33298
3R	22947150	3R_22947150_SNP [dm3] 3R_27121428_SNP [dm6]	G	A	2.921e^-4	0.788	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
2R	16478249	2R_16478249_SNP [dm3] 2R_20590744_SNP [dm6]	G	C	2.923e^-4	0.788	INTRON bl
3R	26330761	3R_26330761_SNP [dm3] 3R_30505039_SNP [dm6]	T	C	2.925e^-4	0.788	SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG15539
2R	9738465	2R_9738465_SNP [dm3] 2R_13850960_SNP [dm6]	G	A	2.926e^-4	0.788	NON_SYNONYMOUS_CODING CG30485
3L	6075722	3L_6075722_SNP [dm3] 3L_6082622_SNP [dm6]	G	T	2.927e^-4	0.788	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23961282	3R_23961282_SNP [dm3] 3R_28135560_SNP [dm6]	T	C	2.928e^-4	0.788	INTERGENIC
2L	19928432	2L_19928432_SNP [dm3] 2L_19928432_SNP [dm6]	T	C	2.936e^-4	0.788	INTRON sick
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	2.943e^-4	0.788	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4183397	2R_4183397_SNP [dm3] 2R_8295892_SNP [dm6]	T	A	2.952e^-4	0.788	INTERGENIC
3L	12202596	3L_12202596_DEL [dm3] 3L_12209496_DEL [dm6]	TATATATAATAT...	T	2.954e^-4	0.788	UTR_3_PRIME app INTRON app
3R	13430168	3R_13430168_DEL [dm3] 3R_17604446_DEL [dm6]	CC	C	2.958e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9964742	3L_9964742_SNP [dm3] 3L_9971642_SNP [dm6]	T	A	2.961e^-4	0.788	UPSTREAM vnc & 1 other DOWNSTREAM Nc INTRON CG6674	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15193070	2R_15193070_SNP [dm3] 2R_19305565_SNP [dm6]	C	G	2.962e^-4	0.788	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3R	18790984	3R_18790984_SNP [dm3] 3R_22965262_SNP [dm6]	A	G	2.963e^-4	0.788	UPSTREAM CR43655 INTERGENIC
X	17664119	X_17664119_SNP [dm3] X_17770086_SNP [dm6]	T	G	2.970e^-4	0.788	INTRON unc-4
X	15576870	X_15576870_SNP [dm3] X_15682837_SNP [dm6]	T	A	2.977e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15764980	2L_15764980_SNP [dm3] 2L_15764980_SNP [dm6]	G	A	2.977e^-4	0.788	SYNONYMOUS_CODING CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17405412	3L_17405412_SNP [dm3] 3L_17412312_SNP [dm6]	G	A	2.982e^-4	0.788	INTRON blot	TF binding site BDTNP1_TFBS_Med
3L	667950	3L_667950_SNP [dm3] 3L_667950_SNP [dm6]	G	T	2.988e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1962467	X_1962467_SNP [dm3] X_2068434_SNP [dm6]	C	G	2.990e^-4	0.788	UPSTREAM CG4194 INTRON CG4199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10459815	2R_10459815_SNP [dm3] 2R_14572310_SNP [dm6]	C	T	2.991e^-4	0.788	SYNONYMOUS_CODING LamC INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8077974	3L_8077974_SNP [dm3] 3L_8084874_SNP [dm6]	C	T	2.992e^-4	0.788	INTRON Ect4	TF binding site BDTNP1_TFBS_sna
3R	3855969	3R_3855969_SNP [dm3] 3R_8030247_SNP [dm6]	C	A	2.993e^-4	0.788	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18076000	3R_18076000_SNP [dm3] 3R_22250278_SNP [dm6]	A	G	2.996e^-4	0.788	INTRON SKIP
2L	6607812	2L_6607812_SNP [dm3] 2L_6607812_SNP [dm6]	A	T	3.001e^-4	0.788	INTERGENIC
3R	18064210	3R_18064210_SNP [dm3] 3R_22238488_SNP [dm6]	G	A	3.002e^-4	0.788	INTRON SKIP
2L	7143446	2L_7143446_SNP [dm3] 2L_7143446_SNP [dm6]	A	C	3.014e^-4	0.788	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4183395	2R_4183395_SNP [dm3] 2R_8295890_SNP [dm6]	T	A	3.032e^-4	0.788	INTERGENIC
2L	15763129	2L_15763129_SNP [dm3] 2L_15763129_SNP [dm6]	T	A	3.038e^-4	0.788	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3464516	2R_3464516_SNP [dm3] 2R_7577011_SNP [dm6]	G	A	3.040e^-4	0.788	SPLICE_SITE_REGION Vps13 INTRON Vps13
3L	15390375	3L_15390375_DEL [dm3] 3L_15397275_DEL [dm6]	GAAATAG	G	3.057e^-4	0.788	INTERGENIC
2L	21300850	2L_21300850_SNP [dm3] 2L_21300850_SNP [dm6]	T	G	3.070e^-4	0.788	INTRON Mio
2R	16804952	2R_16804952_SNP [dm3] 2R_20917447_SNP [dm6]	A	G	3.072e^-4	0.788	INTRON Rx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	14556492	2R_14556492_SNP [dm3] 2R_18668987_SNP [dm6]	T	A	3.073e^-4	0.788	INTRON edl
2L	21211000	2L_21211000_SNP [dm3] 2L_21211000_SNP [dm6]	T	G	3.074e^-4	0.788	SYNONYMOUS_CODING clumsy UTR_3_PRIME clumsy
2L	21220309	2L_21220309_SNP [dm3] 2L_21220309_SNP [dm6]	A	C	3.074e^-4	0.788	UTR_5_PRIME Atg18b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2L	21308268	2L_21308268_SNP [dm3] 2L_21308268_SNP [dm6]	A	T	3.074e^-4	0.788	INTRON Mio
2R	7006027	2R_7006027_SNP [dm3] 2R_11118522_SNP [dm6]	T	C	3.075e^-4	0.788	UTR_3_PRIME Cyp12d1-p
2R	16342170	2R_16342170_SNP [dm3] 2R_20454665_SNP [dm6]	G	A	3.091e^-4	0.788	INTRON CG12484
2L	17899762	2L_17899762_SNP [dm3] 2L_17899762_SNP [dm6]	C	G	3.101e^-4	0.788	INTERGENIC
X	8363186	X_8363186_SNP [dm3] X_8469153_SNP [dm6]	A	G	3.102e^-4	0.788	UPSTREAM CG12116 INTRON CG33223
3L	14188025	3L_14188025_SNP [dm3] 3L_14194925_SNP [dm6]	T	G	3.109e^-4	0.788	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23993445	3L_23993445_SNP [dm3] 3L_24000345_SNP [dm6]	T	C	3.110e^-4	0.788	INTERGENIC
3L	5161453	3L_5161453_SNP [dm3] 3L_5168353_SNP [dm6]	T	C	3.118e^-4	0.788	INTRON shep	TF binding site mE1_TFBS_Kr
2L	15787710	2L_15787710_SNP [dm3] 2L_15787710_SNP [dm6]	C	T	3.119e^-4	0.788	SYNONYMOUS_CODING CG18109
3R	17652546	3R_17652546_SNP [dm3] 3R_21826824_SNP [dm6]	A	G	3.122e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	12907195	X_12907195_SNP [dm3] X_13013162_SNP [dm6]	C	G	3.123e^-4	0.788	INTRON rad
3R	23957481	3R_23957481_SNP [dm3] 3R_28131759_SNP [dm6]	T	G	3.126e^-4	0.788	INTERGENIC
2R	9084359	2R_9084359_SNP [dm3] 2R_13196854_SNP [dm6]	G	T	3.127e^-4	0.788	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	10953393	2R_10953393_SNP [dm3] 2R_15065888_SNP [dm6]	T	C	3.139e^-4	0.788	INTERGENIC
3L	14338211	3L_14338211_SNP [dm3] 3L_14345111_SNP [dm6]	G	T	3.144e^-4	0.788	INTRON fz
3R	23770189	3R_23770189_SNP [dm3] 3R_27944467_SNP [dm6]	T	C	3.144e^-4	0.788	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14754926	2L_14754926_SNP [dm3] 2L_14754926_SNP [dm6]	A	G	3.152e^-4	0.788	INTERGENIC
2R	12392648	2R_12392648_SNP [dm3] 2R_16505143_SNP [dm6]	A	T	3.154e^-4	0.788	INTRON Sema-2a
3L	23233594	3L_23233594_SNP [dm3] 3L_23240494_SNP [dm6]	C	T	3.154e^-4	0.788	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
3L	6075740	3L_6075740_SNP [dm3] 3L_6082640_SNP [dm6]	A	G	3.156e^-4	0.788	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14108972	2L_14108972_SNP [dm3] 2L_14108972_SNP [dm6]	A	G	3.162e^-4	0.788	SYNONYMOUS_CODING CG15293 DOWNSTREAM CG31769
2R	14559503	2R_14559503_SNP [dm3] 2R_18671998_SNP [dm6]	A	C	3.167e^-4	0.788	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9738472	2R_9738472_SNP [dm3] 2R_13850967_SNP [dm6]	G	T	3.169e^-4	0.788	NON_SYNONYMOUS_CODING CG30485
2L	17668187	2L_17668187_SNP [dm3] 2L_17668187_SNP [dm6]	C	A	3.174e^-4	0.788	INTRON CadN
3R	23810574	3R_23810574_SNP [dm3] 3R_27984852_SNP [dm6]	T	C	3.177e^-4	0.788	INTRON betaTub97EF
3L	24329353	3L_24329353_SNP [dm3] 3L_24336253_SNP [dm6]	A	T	3.180e^-4	0.788	INTRON nvd
2R	4183388	2R_4183388_SNP [dm3] 2R_8295883_SNP [dm6]	T	C	3.202e^-4	0.788	INTERGENIC
2R	6439453	2R_6439453_SNP [dm3] 2R_10551948_SNP [dm6]	C	G	3.209e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14764343	X_14764343_DEL [dm3] X_14870310_DEL [dm6]	AA	A	3.217e^-4	0.788	INTRON Flo2 & 1 other
3L	5404724	3L_5404724_SNP [dm3] 3L_5411624_SNP [dm6]	T	G	3.221e^-4	0.788	INTERGENIC
3R	25503614	3R_25503614_SNP [dm3] 3R_29677892_SNP [dm6]	T	C	3.224e^-4	0.788	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad
3L	10218472	3L_10218472_SNP [dm3] 3L_10225372_SNP [dm6]	A	C	3.224e^-4	0.788	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	4794225	X_4794225_SNP [dm3] X_4900192_SNP [dm6]	A	T	3.241e^-4	0.788	INTRON CG42594
X	4794245	X_4794245_SNP [dm3] X_4900212_SNP [dm6]	G	C	3.241e^-4	0.788	INTRON CG42594
X	17664240	X_17664240_SNP [dm3] X_17770207_SNP [dm6]	C	T	3.244e^-4	0.788	INTRON unc-4
X	5260609	X_5260609_SNP [dm3] X_5366576_SNP [dm6]	T	A	3.247e^-4	0.788	INTRON SK
2L	5962958	2L_5962958_DEL [dm3] 2L_5962958_DEL [dm6]	AG	A	3.247e^-4	0.788	DOWNSTREAM psd INTERGENIC
2L	3282255	2L_3282255_SNP [dm3] 2L_3282255_SNP [dm6]	G	A	3.251e^-4	0.788	INTERGENIC
2R	3931126	2R_3931126_SNP [dm3] 2R_8043621_SNP [dm6]	T	C	3.254e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	14874014	2L_14874014_SNP [dm3] 2L_14874014_SNP [dm6]	G	A	3.264e^-4	0.788	DOWNSTREAM CG15278 INTERGENIC
2R	11610235	2R_11610235_SNP [dm3] 2R_15722730_SNP [dm6]	C	T	3.267e^-4	0.788	INTERGENIC
3L	575771	3L_575771_SNP [dm3] 3L_575771_SNP [dm6]	A	G	3.273e^-4	0.788	UTR_3_PRIME hipk
2R	16922027	2R_16922027_SNP [dm3] 2R_21034522_SNP [dm6]	C	G	3.276e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19479635	3R_19479635_SNP [dm3] 3R_23653913_SNP [dm6]	A	G	3.281e^-4	0.788	INTRON CG31145
3R	19009079	3R_19009079_SNP [dm3] 3R_23183357_SNP [dm6]	T	C	3.283e^-4	0.788	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19309901	X_19309901_SNP [dm3] X_19415868_SNP [dm6]	T	G	3.283e^-4	0.788	INTRON kek5
3R	19620001	3R_19620001_SNP [dm3] 3R_23794279_SNP [dm6]	C	T	3.285e^-4	0.788	INTRON mbc
2R	9738475	2R_9738475_SNP [dm3] 2R_13850970_SNP [dm6]	G	A	3.287e^-4	0.788	SYNONYMOUS_CODING CG30485
2L	6608955	2L_6608955_SNP [dm3] 2L_6608955_SNP [dm6]	C	T	3.289e^-4	0.788	INTERGENIC
3L	7754482	3L_7754482_SNP [dm3] 3L_7761382_SNP [dm6]	A	T	3.291e^-4	0.788	UTR_5_PRIME Hn INTRON Hn
3L	15135128	3L_15135128_SNP [dm3] 3L_15142028_SNP [dm6]	G	A	3.298e^-4	0.788	UPSTREAM CR45396 INTRON Pdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	619699	2R_619699_SNP [dm3] 2R_4732194_SNP [dm6]	A	G	3.299e^-4	0.788	UPSTREAM CR40282 DOWNSTREAM CR45471 INTRON CR41440
3R	24824951	3R_24824951_SNP [dm3] 3R_28999229_SNP [dm6]	T	C	3.302e^-4	0.788	INTRON wat
3L	14907805	3L_14907805_SNP [dm3] 3L_14914705_SNP [dm6]	A	G	3.308e^-4	0.788	INTRON DCX-EMAP
2L	7143385	2L_7143385_SNP [dm3] 2L_7143385_SNP [dm6]	T	C	3.309e^-4	0.788	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18872412	2R_18872412_SNP [dm3] 2R_22984889_SNP [dm6]	A	G	3.311e^-4	0.788	SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
2R	18873383	2R_18873383_SNP [dm3] 2R_22985860_SNP [dm6]	A	T	3.313e^-4	0.788	NON_SYNONYMOUS_CODING CG9897 UPSTREAM mir-4939 & 1 other INTRON twi & 1 other EXON CR42742
2R	8581508	2R_8581508_SNP [dm3] 2R_12694003_SNP [dm6]	C	G	3.316e^-4	0.788	INTERGENIC
3L	5566160	3L_5566160_SNP [dm3] 3L_5573060_SNP [dm6]	C	A	3.318e^-4	0.788	INTRON Msr-110
X	16939659	X_16939659_SNP [dm3] X_17045626_SNP [dm6]	T	C	3.320e^-4	0.788	INTRON CG45002
3L	15609911	3L_15609911_SNP [dm3] 3L_15616811_SNP [dm6]	A	C	3.337e^-4	0.788	INTRON comm3
3R	26038741	3R_26038741_SNP [dm3] 3R_30213019_SNP [dm6]	C	T	3.338e^-4	0.788	DOWNSTREAM CecB & 1 other INTRON Cec2
2R	16007675	2R_16007675_SNP [dm3] 2R_20120170_SNP [dm6]	T	C	3.340e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19875298	X_19875298_DEL [dm3] X_19981265_DEL [dm6]	ATGGCTTGTAACTCTTTGGT...	A	3.342e^-4	0.788	INTERGENIC
3L	24329106	3L_24329106_SNP [dm3] 3L_24336006_SNP [dm6]	T	A	3.344e^-4	0.788	INTRON nvd
2R	18453008	2R_18453008_SNP [dm3] 2R_22565503_SNP [dm6]	T	A	3.348e^-4	0.788	INTRON dnr1
2R	16198095	2R_16198095_SNP [dm3] 2R_20310590_SNP [dm6]	A	G	3.358e^-4	0.788	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	24264806	3L_24264806_SNP [dm3] 3L_24271706_SNP [dm6]	C	A	3.364e^-4	0.788	INTRON Snap25
3R	7736691	3R_7736691_SNP [dm3] 3R_11910969_SNP [dm6]	A	T	3.365e^-4	0.788	INTRON Cad87A
3L	17173911	3L_17173911_SNP [dm3] 3L_17180811_SNP [dm6]	G	A	3.366e^-4	0.788	INTRON Rbp6
2R	14035503	2R_14035503_SNP [dm3] 2R_18147998_SNP [dm6]	C	T	3.367e^-4	0.788	UPSTREAM CG17680 DOWNSTREAM CG5742 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18813717	3L_18813717_SNP [dm3] 3L_18820617_SNP [dm6]	A	C	3.372e^-4	0.788	START_GAINED CG14073 UTR_5_PRIME CG14073 UPSTREAM HipHop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7736692	3R_7736692_SNP [dm3] 3R_11910970_SNP [dm6]	G	T	3.372e^-4	0.788	INTRON Cad87A
X	12996538	X_12996538_SNP [dm3] X_13102505_SNP [dm6]	T	C	3.373e^-4	0.788	INTRON CG43313
3L	4951792	3L_4951792_SNP [dm3] 3L_4951792_SNP [dm6]	A	G	3.375e^-4	0.788	INTRON Con
2R	4183387	2R_4183387_SNP [dm3] 2R_8295882_SNP [dm6]	G	T	3.379e^-4	0.788	INTERGENIC
3L	7025908	3L_7025908_SNP [dm3] 3L_7032808_SNP [dm6]	G	T	3.381e^-4	0.788	INTRON Mp
3L	18643448	3L_18643448_SNP [dm3] 3L_18650348_SNP [dm6]	G	C	3.387e^-4	0.788	INTRON MYPT-75D
3L	23594359	3L_23594359_SNP [dm3] 3L_23601259_SNP [dm6]	A	G	3.388e^-4	0.788	INTRON AGO3	transposable element FlyBase
2L	14795985	2L_14795985_SNP [dm3] 2L_14795985_SNP [dm6]	C	A	3.390e^-4	0.788	SYNONYMOUS_CODING CG18420
3L	7951606	3L_7951606_SNP [dm3] 3L_7958506_SNP [dm6]	G	C	3.397e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16603575	2R_16603575_SNP [dm3] 2R_20716070_SNP [dm6]	G	A	3.399e^-4	0.788	INTRON dpr
3L	15864195	3L_15864195_SNP [dm3] 3L_15871095_SNP [dm6]	A	G	3.400e^-4	0.788	INTRON pHCl
3L	18595591	3L_18595591_SNP [dm3] 3L_18602491_SNP [dm6]	G	T	3.405e^-4	0.788	UPSTREAM CG4174 & 1 other INTRON CG4174 & 1 other
3L	689544	3L_689544_SNP [dm3] 3L_689544_SNP [dm6]	A	G	3.407e^-4	0.788	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	23524038	3L_23524038_SNP [dm3] 3L_23530938_SNP [dm6]	A	T	3.411e^-4	0.788	INTERGENIC	transposable element FlyBase
2R	17773132	2R_17773132_DEL [dm3] 2R_21885627_DEL [dm6]	AGAAA	A	3.414e^-4	0.788	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19570461	3R_19570461_SNP [dm3] 3R_23744739_SNP [dm6]	A	G	3.419e^-4	0.788	INTRON Hmgcr
X	5034253	X_5034253_SNP [dm3] X_5140220_SNP [dm6]	A	G	3.422e^-4	0.788	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2R	12994658	2R_12994658_SNP [dm3] 2R_17107153_SNP [dm6]	C	T	3.425e^-4	0.788	UTR_3_PRIME CG30456	TF binding site mE1_TFBS_cad
X	11741957	X_11741957_SNP [dm3] X_11847924_SNP [dm6]	A	G	3.426e^-4	0.788	INTERGENIC
X	17545846	X_17545846_SNP [dm3] X_17651813_SNP [dm6]	G	A	3.433e^-4	0.788	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTRON RhoGAPp190	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	9359341	2R_9359341_SNP [dm3] 2R_13471836_SNP [dm6]	C	T	3.441e^-4	0.788	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8490414	2R_8490414_SNP [dm3] 2R_12602909_SNP [dm6]	T	C	3.441e^-4	0.788	INTRON Amph
2L	925303	2L_925303_SNP [dm3] 2L_925303_SNP [dm6]	A	T	3.444e^-4	0.788	INTRON CG4341
3R	3973340	3R_3973340_INS [dm3] 3R_8147618_INS [dm6]	A	AA	3.466e^-4	0.788	UTR_3_PRIME grn
2L	14419427	2L_14419427_SNP [dm3] 2L_14419427_SNP [dm6]	A	T	3.471e^-4	0.788	INTERGENIC
3L	13793279	3L_13793279_SNP [dm3] 3L_13800179_SNP [dm6]	G	A	3.473e^-4	0.788	INTRON bru-3
3R	25316052	3R_25316052_SNP [dm3] 3R_29490330_SNP [dm6]	C	G	3.477e^-4	0.788	SYNONYMOUS_CODING CG2006 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8581028	2R_8581028_SNP [dm3] 2R_12693523_SNP [dm6]	T	G	3.479e^-4	0.788	UPSTREAM CG8768 INTERGENIC
2R	15572652	2R_15572652_SNP [dm3] 2R_19685147_SNP [dm6]	A	G	3.484e^-4	0.788	UPSTREAM CR44505 DOWNSTREAM CG15128 INTERGENIC
3L	11529225	3L_11529225_SNP [dm3] 3L_11536125_SNP [dm6]	A	C	3.488e^-4	0.788	INTRON Mob2	TF binding site mE1_TFBS_HSA
2L	8658062	2L_8658062_SNP [dm3] 2L_8658062_SNP [dm6]	C	T	3.490e^-4	0.788	INTRON Sema-1a
2L	9154028	2L_9154028_SNP [dm3] 2L_9154028_SNP [dm6]	T	G	3.491e^-4	0.788	INTRON CG32982
2R	4183392	2R_4183392_SNP [dm3] 2R_8295887_SNP [dm6]	A	C	3.491e^-4	0.788	INTERGENIC
X	1960794	X_1960794_SNP [dm3] X_2066761_SNP [dm6]	G	A	3.495e^-4	0.788	NON_SYNONYMOUS_CODING CG4199 UPSTREAM CG14054 DOWNSTREAM CR44381	TF binding site mE1_TFBS_chinmo
X	20561610	X_20561610_SNP [dm3] X_20690583_SNP [dm6]	T	C	3.497e^-4	0.788	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	19875236	X_19875236_SNP [dm3] X_19981203_SNP [dm6]	C	A	3.502e^-4	0.788	INTERGENIC
3R	18063302	3R_18063302_SNP [dm3] 3R_22237580_SNP [dm6]	C	G	3.503e^-4	0.788	INTRON SKIP
X	17664454	X_17664454_INS [dm3] X_17770421_INS [dm6]	A	AGAGCCTA	3.503e^-4	0.788	INTRON unc-4
2L	7088040	2L_7088040_SNP [dm3] 2L_7088040_SNP [dm6]	C	T	3.504e^-4	0.788	INTERGENIC
3L	962493	3L_962493_SNP [dm3] 3L_962493_SNP [dm6]	A	T	3.510e^-4	0.788	INTRON Glut1
3L	1707630	3L_1707630_SNP [dm3] 3L_1707630_SNP [dm6]	C	G	3.511e^-4	0.788	INTRON CG7991
2L	20321158	2L_20321158_SNP [dm3] 2L_20321158_SNP [dm6]	C	T	3.523e^-4	0.788	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16406445	2L_16406445_INS [dm3] 2L_16406445_INS [dm6]	G	GG	3.525e^-4	0.788	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8579616	2R_8579616_SNP [dm3] 2R_12692111_SNP [dm6]	T	G	3.528e^-4	0.788	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	6736538	2R_6736538_SNP [dm3] 2R_10849033_SNP [dm6]	G	A	3.547e^-4	0.788	SYNONYMOUS_CODING CG30015 START_GAINED CG30015 UTR_5_PRIME CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7166553	3R_7166553_SNP [dm3] 3R_11340831_SNP [dm6]	G	T	3.548e^-4	0.788	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10716310	2L_10716310_SNP [dm3] 2L_10716310_SNP [dm6]	C	T	3.550e^-4	0.788	INTERGENIC
2R	6747217	2R_6747217_SNP [dm3] 2R_10859712_SNP [dm6]	T	A	3.555e^-4	0.788	INTRON CG30015 EXON CR44302	TF binding site BDTNP1_TFBS_dl
3R	5154669	3R_5154669_SNP [dm3] 3R_9328947_SNP [dm6]	A	T	3.568e^-4	0.788	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	6746057	2R_6746057_SNP [dm3] 2R_10858552_SNP [dm6]	G	T	3.570e^-4	0.788	INTRON CG30015
2R	16730592	2R_16730592_DEL [dm3] 2R_20843087_DEL [dm6]	TT	T	3.572e^-4	0.788	INTERGENIC
3R	25547589	3R_25547589_SNP [dm3] 3R_29721867_SNP [dm6]	C	T	3.582e^-4	0.788	SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
X	17546060	X_17546060_SNP [dm3] X_17652027_SNP [dm6]	C	A	3.586e^-4	0.788	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTRON RhoGAPp190	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	9316137	2R_9316137_SNP [dm3] 2R_13428632_SNP [dm6]	T	C	3.586e^-4	0.788	INTRON CG42321
X	13128018	X_13128018_SNP [dm3] X_13233985_SNP [dm6]	T	A	3.591e^-4	0.788	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12392094	2R_12392094_INS [dm3] 2R_16504589_INS [dm6]	C	CACCCCCCA	3.597e^-4	0.788	INTRON Sema-2a
3R	19741028	3R_19741028_SNP [dm3] 3R_23915306_SNP [dm6]	A	C	3.608e^-4	0.788	INTRON sba
3L	2409653	3L_2409653_SNP [dm3] 3L_2409653_SNP [dm6]	C	T	3.608e^-4	0.788	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	6958686	2L_6958686_SNP [dm3] 2L_6958686_SNP [dm6]	T	G	3.620e^-4	0.788	NON_SYNONYMOUS_CODING CG3430 DOWNSTREAM Atac1
2R	12994666	2R_12994666_SNP [dm3] 2R_17107161_SNP [dm6]	G	C	3.623e^-4	0.788	UTR_3_PRIME CG30456	TF binding site mE1_TFBS_cad
2L	7187631	2L_7187631_SNP [dm3] 2L_7187631_SNP [dm6]	C	T	3.624e^-4	0.788	SYNONYMOUS_CODING CG4496
3L	1007190	3L_1007190_SNP [dm3] 3L_1007190_SNP [dm6]	T	C	3.625e^-4	0.788	INTRON trio
2L	11552989	2L_11552989_SNP [dm3] 2L_11552989_SNP [dm6]	C	T	3.628e^-4	0.788	INTERGENIC
2L	11552991	2L_11552991_SNP [dm3] 2L_11552991_SNP [dm6]	A	T	3.628e^-4	0.788	INTERGENIC
2L	3595099	2L_3595099_SNP [dm3] 2L_3595099_SNP [dm6]	T	A	3.636e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24824930	3R_24824930_SNP [dm3] 3R_28999208_SNP [dm6]	G	A	3.638e^-4	0.788	INTRON wat
3R	11258893	3R_11258893_SNP [dm3] 3R_15433171_SNP [dm6]	G	T	3.644e^-4	0.788	INTRON CG6118
3L	3916336	3L_3916336_SNP [dm3] 3L_3916336_SNP [dm6]	C	T	3.656e^-4	0.788	INTRON Eip63F-1	TF binding site mE1_TFBS_cad
2R	15528106	2R_15528106_SNP [dm3] 2R_19640601_SNP [dm6]	T	C	3.662e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4794079	X_4794079_SNP [dm3] X_4900046_SNP [dm6]	A	T	3.672e^-4	0.788	INTRON CG42594
X	3141297	X_3141297_SNP [dm3] X_3247264_SNP [dm6]	A	G	3.673e^-4	0.788	INTRON dnc
X	17663829	X_17663829_SNP [dm3] X_17769796_SNP [dm6]	C	A	3.675e^-4	0.788	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
3L	1261711	3L_1261711_SNP [dm3] 3L_1261711_SNP [dm6]	G	A	3.675e^-4	0.788	SYNONYMOUS_CODING CG9134
3R	24015094	3R_24015094_SNP [dm3] 3R_28189372_SNP [dm6]	T	C	3.679e^-4	0.788	INTRON CG34354
3R	23939774	3R_23939774_SNP [dm3] 3R_28114052_SNP [dm6]	T	G	3.682e^-4	0.788	INTERGENIC
3R	7773590	3R_7773590_SNP [dm3] 3R_11947868_SNP [dm6]	G	A	3.691e^-4	0.788	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl
X	8761087	X_8761087_SNP [dm3] X_8867054_SNP [dm6]	G	T	3.696e^-4	0.788	INTRON CG12075
2L	9062140	2L_9062140_SNP [dm3] 2L_9062140_SNP [dm6]	T	C	3.697e^-4	0.788	INTRON CG31708
3R	16891880	3R_16891880_SNP [dm3] 3R_21066158_SNP [dm6]	A	C	3.699e^-4	0.788	INTRON AnxB9	TF binding site mE1_TFBS_Trl
2R	8575545	2R_8575545_SNP [dm3] 2R_12688040_SNP [dm6]	T	C	3.707e^-4	0.788	SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19507659	X_19507659_SNP [dm3] X_19613626_SNP [dm6]	T	G	3.709e^-4	0.788	SPLICE_SITE_REGION Shawn & 1 other UPSTREAM Shawn INTRON Shawn & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	953992	3L_953992_SNP [dm3] 3L_953992_SNP [dm6]	T	C	3.721e^-4	0.788	INTRON Glut1
2R	8577652	2R_8577652_SNP [dm3] 2R_12690147_SNP [dm6]	G	C	3.727e^-4	0.788	UTR_3_PRIME Obp49a UPSTREAM CG30053
2R	10164048	2R_10164048_INS [dm3] 2R_14276543_INS [dm6]	G	GG	3.730e^-4	0.788	UTR_5_PRIME Ih INTRON Ih
2L	6608525	2L_6608525_SNP [dm3] 2L_6608525_SNP [dm6]	T	A	3.732e^-4	0.788	INTERGENIC
2L	6476981	2L_6476981_SNP [dm3] 2L_6476981_SNP [dm6]	T	C	3.735e^-4	0.788	UPSTREAM CG9536 DOWNSTREAM Sec61alpha INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	8163677	3L_8163677_SNP [dm3] 3L_8170577_SNP [dm6]	A	T	3.738e^-4	0.788	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	8581463	2R_8581463_DEL [dm3] 2R_12693958_DEL [dm6]	GTGTTTGTA	G	3.739e^-4	0.788	INTERGENIC
2L	20973014	2L_20973014_SNP [dm3] 2L_20973014_SNP [dm6]	G	A	3.758e^-4	0.788	INTRON CG42238
X	4811833	X_4811833_SNP [dm3] X_4917800_SNP [dm6]	A	G	3.762e^-4	0.788	SYNONYMOUS_CODING CG4041 UPSTREAM CG6903	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
3L	7754492	3L_7754492_SNP [dm3] 3L_7761392_SNP [dm6]	C	T	3.766e^-4	0.788	UTR_5_PRIME Hn INTRON Hn
2L	3314829	2L_3314829_SNP [dm3] 2L_3314829_SNP [dm6]	A	G	3.774e^-4	0.788	INTRON CG3277
2R	12392088	2R_12392088_SNP [dm3] 2R_16504583_SNP [dm6]	A	C	3.780e^-4	0.788	INTRON Sema-2a
3L	24316583	3L_24316583_SNP [dm3] 3L_24323483_SNP [dm6]	T	C	3.785e^-4	0.788	INTERGENIC
3L	689511	3L_689511_SNP [dm3] 3L_689511_SNP [dm6]	G	A	3.794e^-4	0.788	SYNONYMOUS_CODING CG32483	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4797494	X_4797494_SNP [dm3] X_4903461_SNP [dm6]	A	G	3.797e^-4	0.788	INTRON CG42594
3L	20793299	3L_20793299_SNP [dm3] 3L_20800199_SNP [dm6]	C	G	3.803e^-4	0.788	UPSTREAM Spc105R DOWNSTREAM CG4365 INTERGENIC
3R	22896425	3R_22896425_SNP [dm3] 3R_27070703_SNP [dm6]	G	A	3.809e^-4	0.788	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4377596	2R_4377596_SNP [dm3] 2R_8490091_SNP [dm6]	T	A	3.816e^-4	0.788	INTRON mtt
2L	11428143	2L_11428143_SNP [dm3] 2L_11428143_SNP [dm6]	A	C	3.816e^-4	0.788	INTERGENIC
3R	24824940	3R_24824940_SNP [dm3] 3R_28999218_SNP [dm6]	A	T	3.819e^-4	0.788	INTRON wat
X	6949671	X_6949671_SNP [dm3] X_7055638_SNP [dm6]	A	T	3.819e^-4	0.788	INTRON CG12541	TF binding site BDTNP1_TFBS_prd
3L	14916568	3L_14916568_DEL [dm3] 3L_14923468_DEL [dm6]	ATATTCC	A	3.820e^-4	0.788	INTRON DCX-EMAP
3L	6075692	3L_6075692_SNP [dm3] 3L_6082592_SNP [dm6]	C	A	3.820e^-4	0.788	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2969537	2R_2969537_SNP [dm3] 2R_7082032_SNP [dm6]	G	C	3.823e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3891824	3R_3891824_SNP [dm3] 3R_8066102_SNP [dm6]	C	G	3.838e^-4	0.788	INTRON mAChR-B
2R	3042597	2R_3042597_SNP [dm3] 2R_7155092_SNP [dm6]	G	T	3.849e^-4	0.788	SYNONYMOUS_CODING Spn43Ad INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2001937	2L_2001937_SNP [dm3] 2L_2001937_SNP [dm6]	G	C	3.850e^-4	0.788	INTRON CG33543 EXON CR43464
3R	4046667	3R_4046667_SNP [dm3] 3R_8220945_SNP [dm6]	G	A	3.852e^-4	0.788	NON_SYNONYMOUS_CODING CG18249	TF binding site mE1_TFBS_sens
2L	14754894	2L_14754894_SNP [dm3] 2L_14754894_SNP [dm6]	C	G	3.855e^-4	0.788	INTERGENIC
3R	23771271	3R_23771271_SNP [dm3] 3R_27945549_SNP [dm6]	G	A	3.861e^-4	0.788	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	20274310	2R_20274310_SNP [dm3] 2R_24386787_SNP [dm6]	A	C	3.866e^-4	0.788	INTRON mAChR-A
2L	20063222	2L_20063222_SNP [dm3] 2L_20063222_SNP [dm6]	G	T	3.866e^-4	0.788	UTR_3_PRIME lok INTRON lok	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13430181	3R_13430181_SNP [dm3] 3R_17604459_SNP [dm6]	C	T	3.881e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11120002	3L_11120002_SNP [dm3] 3L_11126902_SNP [dm6]	C	G	3.881e^-4	0.788	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	12136692	X_12136692_SNP [dm3] X_12242659_SNP [dm6]	C	T	3.888e^-4	0.788	INTRON Ten-a
3L	3861556	3L_3861556_SNP [dm3] 3L_3861556_SNP [dm6]	G	A	3.888e^-4	0.788	UTR_3_PRIME Awh
3L	6252189	3L_6252189_SNP [dm3] 3L_6259089_SNP [dm6]	A	T	3.894e^-4	0.788	UPSTREAM CG10163 DOWNSTREAM ImpL3 INTERGENIC
2L	19303061	2L_19303061_SNP [dm3] 2L_19303061_SNP [dm6]	T	G	3.901e^-4	0.788	INTERGENIC
2L	15620770	2L_15620770_SNP [dm3] 2L_15620770_SNP [dm6]	C	T	3.915e^-4	0.788	INTERGENIC
X	20022929	X_20022929_INS [dm3] X_20128896_INS [dm6]	T	TT	3.924e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_inv
2L	21239979	2L_21239979_SNP [dm3] 2L_21239979_SNP [dm6]	G	A	3.928e^-4	0.788	INTRON Hr39
2R	10544276	2R_10544276_SNP [dm3] 2R_14656771_SNP [dm6]	G	A	3.930e^-4	0.788	DOWNSTREAM Adgf-E INTERGENIC
3L	10223932	3L_10223932_SNP [dm3] 3L_10230832_SNP [dm6]	T	C	3.933e^-4	0.788	INTERGENIC
3L	2383797	3L_2383797_SNP [dm3] 3L_2383797_SNP [dm6]	T	G	3.936e^-4	0.788	INTRON CG45186	TF binding site mE1_TFBS_sens
2R	18558219	2R_18558219_SNP [dm3] 2R_22670714_SNP [dm6]	T	A	3.936e^-4	0.788	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	6608935	2L_6608935_SNP [dm3] 2L_6608935_SNP [dm6]	A	G	3.937e^-4	0.788	INTERGENIC
2L	21024705	2L_21024705_SNP [dm3] 2L_21024705_SNP [dm6]	G	T	3.937e^-4	0.788	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2434431	2R_2434431_INS [dm3] 2R_6546926_INS [dm6]	T	TATGTATGTATAT...	3.937e^-4	0.788	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19878623	X_19878623_SNP [dm3] X_19984590_SNP [dm6]	A	C	3.944e^-4	0.788	INTERGENIC
3R	27212486	3R_27212486_SNP [dm3] 3R_31386764_SNP [dm6]	C	T	3.950e^-4	0.788	INTRON CG1607
3R	26127533	3R_26127533_SNP [dm3] 3R_30301811_SNP [dm6]	T	A	3.953e^-4	0.788	INTRON hdc
X	19357878	X_19357878_SNP [dm3] X_19463845_SNP [dm6]	C	T	3.970e^-4	0.788	INTRON kek5
3L	5973068	3L_5973068_SNP [dm3] 3L_5979968_SNP [dm6]	T	C	3.970e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9245751	2L_9245751_DEL [dm3] 2L_9245751_DEL [dm6]	TT	T	3.976e^-4	0.788	INTRON tai
3L	18496406	3L_18496406_SNP [dm3] 3L_18503306_SNP [dm6]	A	G	3.978e^-4	0.788	UPSTREAM AstC-R2 INTERGENIC
3R	20353981	3R_20353981_SNP [dm3] 3R_24528259_SNP [dm6]	G	A	3.980e^-4	0.788	DOWNSTREAM CG13618 INTRON CG6607	TF binding site mE1_TFBS_cad
2L	6608655	2L_6608655_SNP [dm3] 2L_6608655_SNP [dm6]	A	T	3.987e^-4	0.788	INTERGENIC
3L	11934093	3L_11934093_SNP [dm3] 3L_11940993_SNP [dm6]	T	A	3.994e^-4	0.788	UPSTREAM Rpt4R INTERGENIC
2L	6932576	2L_6932576_SNP [dm3] 2L_6932576_SNP [dm6]	A	T	3.998e^-4	0.788	UTR_3_PRIME CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
X	17691059	X_17691059_SNP [dm3] X_17797026_SNP [dm6]	T	A	3.998e^-4	0.788	INTRON OdsH
X	5573536	X_5573536_SNP [dm3] X_5679503_SNP [dm6]	C	T	4.000e^-4	0.788	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	24319078	3L_24319078_SNP [dm3] 3L_24325978_SNP [dm6]	C	T	4.001e^-4	0.788	INTRON nvd
3R	14725688	3R_14725688_SNP [dm3] 3R_18899966_SNP [dm6]	C	T	4.001e^-4	0.788	SYNONYMOUS_CODING Rh2 DOWNSTREAM CG14297	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18867673	2R_18867673_SNP [dm3] 2R_22980150_SNP [dm6]	G	T	4.003e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2785500	X_2785500_SNP [dm3] X_2891467_SNP [dm6]	T	C	4.003e^-4	0.788	INTRON kirre & 1 other
2R	15239693	2R_15239693_SNP [dm3] 2R_19352188_SNP [dm6]	A	T	4.005e^-4	0.788	INTRON Rgk1
2L	20640883	2L_20640883_SNP [dm3] 2L_20640883_SNP [dm6]	C	T	4.007e^-4	0.788	UPSTREAM Sfp38D DOWNSTREAM CG31680 INTERGENIC
3L	1258940	3L_1258940_DEL [dm3] 3L_1258940_DEL [dm6]	GTG	G	4.014e^-4	0.788	INTRON CG9134
3L	14373995	3L_14373995_SNP [dm3] 3L_14380895_SNP [dm6]	C	T	4.022e^-4	0.788	INTERGENIC
X	12874651	X_12874651_SNP [dm3] X_12980618_SNP [dm6]	T	G	4.023e^-4	0.788	INTERGENIC
2L	1309508	2L_1309508_SNP [dm3] 2L_1309508_SNP [dm6]	G	T	4.029e^-4	0.788	INTERGENIC
2R	10968907	2R_10968907_SNP [dm3] 2R_15081402_SNP [dm6]	A	C	4.029e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23957512	3R_23957512_SNP [dm3] 3R_28131790_SNP [dm6]	A	G	4.029e^-4	0.788	INTERGENIC
2R	18869803	2R_18869803_SNP [dm3] 2R_22982280_SNP [dm6]	C	T	4.034e^-4	0.788	DOWNSTREAM CG32834 INTERGENIC
2R	12534247	2R_12534247_SNP [dm3] 2R_16646742_SNP [dm6]	C	T	4.036e^-4	0.788	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10212039	3L_10212039_SNP [dm3] 3L_10218939_SNP [dm6]	G	A	4.039e^-4	0.788	SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_sens
2R	9686945	2R_9686945_SNP [dm3] 2R_13799440_SNP [dm6]	T	C	4.045e^-4	0.788	INTRON Cpr50Cb
2L	9186936	2L_9186936_SNP [dm3] 2L_9186936_SNP [dm6]	T	A	4.050e^-4	0.788	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16189784	3L_16189784_SNP [dm3] 3L_16196684_SNP [dm6]	T	A	4.050e^-4	0.788	EXON CR45437
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	4.051e^-4	0.788	INTRON mAChR-B
3L	12417577	3L_12417577_SNP [dm3] 3L_12424477_SNP [dm6]	T	A	4.053e^-4	0.788	INTRON toe	TF binding site mE1_TFBS_cad
2L	19874288	2L_19874288_SNP [dm3] 2L_19874288_SNP [dm6]	C	T	4.055e^-4	0.788	INTRON sick
3L	24145930	3L_24145930_SNP [dm3] 3L_24152830_SNP [dm6]	A	C	4.056e^-4	0.788	INTRON Snap25
3L	6504956	3L_6504956_SNP [dm3] 3L_6511856_SNP [dm6]	G	T	4.060e^-4	0.788	INTRON sfl
X	12874880	X_12874880_SNP [dm3] X_12980847_SNP [dm6]	A	G	4.064e^-4	0.788	INTERGENIC
2R	9744047	2R_9744047_SNP [dm3] 2R_13856542_SNP [dm6]	A	T	4.064e^-4	0.788	UPSTREAM CG6553 DOWNSTREAM CR44367 INTRON tum	TF binding site mE1_TFBS_cad
3L	15609912	3L_15609912_SNP [dm3] 3L_15616812_SNP [dm6]	A	T	4.068e^-4	0.788	INTRON comm3
3L	16433402	3L_16433402_SNP [dm3] 3L_16440302_SNP [dm6]	G	C	4.069e^-4	0.788	INTRON CG33158 & 1 other
3R	5912046	3R_5912046_SNP [dm3] 3R_10086324_SNP [dm6]	G	C	4.069e^-4	0.788	INTRON CR45054	TF binding site mE1_TFBS_Trl
X	17548316	X_17548316_SNP [dm3] X_17654283_SNP [dm6]	G	A	4.072e^-4	0.788	SYNONYMOUS_CODING IntS2	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7760600	3R_7760600_SNP [dm3] 3R_11934878_SNP [dm6]	G	A	4.079e^-4	0.788	INTRON Cad87A
X	13127204	X_13127204_SNP [dm3] X_13233171_SNP [dm6]	C	G	4.081e^-4	0.788	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9933992	3L_9933992_SNP [dm3] 3L_9940892_SNP [dm6]	A	C	4.084e^-4	0.788	INTRON CG34356
X	10621546	X_10621546_DEL [dm3] X_10727513_DEL [dm6]	TT	T	4.087e^-4	0.788	INTRON CG32676
2L	2303085	2L_2303085_SNP [dm3] 2L_2303085_SNP [dm6]	T	A	4.091e^-4	0.788	INTERGENIC
2R	18868149	2R_18868149_SNP [dm3] 2R_22980626_SNP [dm6]	A	G	4.095e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23064011	3R_23064011_SNP [dm3] 3R_27238289_SNP [dm6]	C	A	4.095e^-4	0.788	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	5445437	3R_5445437_INS [dm3] 3R_9619715_INS [dm6]	T	TTT	4.100e^-4	0.788	INTRON CG8312
2R	17588531	2R_17588531_SNP [dm3] 2R_21701026_SNP [dm6]	T	A	4.103e^-4	0.788	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl
2R	9084323	2R_9084323_SNP [dm3] 2R_13196818_SNP [dm6]	G	T	4.109e^-4	0.788	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	630824	2R_630824_SNP [dm3] 2R_4743319_SNP [dm6]	G	T	4.111e^-4	0.788	INTERGENIC
3L	16739356	3L_16739356_DEL [dm3] 3L_16746256_DEL [dm6]	GG	G	4.115e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14035842	2R_14035842_SNP [dm3] 2R_18148337_SNP [dm6]	C	T	4.119e^-4	0.788	UTR_3_PRIME CG5742 UPSTREAM CG17680 DOWNSTREAM CG5742	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18371244	3R_18371244_SNP [dm3] 3R_22545522_SNP [dm6]	C	A	4.123e^-4	0.788	INTRON AdipoR
3R	3939424	3R_3939424_SNP [dm3] 3R_8113702_SNP [dm6]	C	T	4.131e^-4	0.788	INTRON puc EXON CR44331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10973372	2L_10973372_SNP [dm3] 2L_10973372_SNP [dm6]	G	A	4.131e^-4	0.788	UTR_3_PRIME CG16743 DOWNSTREAM abo & 1 other
2L	9346081	2L_9346081_SNP [dm3] 2L_9346081_SNP [dm6]	A	T	4.132e^-4	0.788	INTERGENIC
2L	4433478	2L_4433478_INS [dm3] 2L_4433478_INS [dm6]	G	GTCG	4.134e^-4	0.788	UPSTREAM CG34177 & 1 other INTRON CG15431
3L	10212198	3L_10212198_SNP [dm3] 3L_10219098_SNP [dm6]	T	C	4.137e^-4	0.788	SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6356883	2L_6356883_SNP [dm3] 2L_6356883_SNP [dm6]	T	C	4.138e^-4	0.788	DOWNSTREAM CG9500 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6607805	2L_6607805_SNP [dm3] 2L_6607805_SNP [dm6]	G	T	4.141e^-4	0.788	INTERGENIC
2R	17063571	2R_17063571_SNP [dm3] 2R_21176066_SNP [dm6]	A	C	4.141e^-4	0.788	INTRON Pu
X	4067271	X_4067271_SNP [dm3] X_4173238_SNP [dm6]	A	G	4.148e^-4	0.788	INTRON Fas2
3L	24533061	3L_24533061_SNP [dm3] 3L_24539961_SNP [dm6]	A	G	4.149e^-4	0.788	INTRON mRpS5
3L	11120053	3L_11120053_SNP [dm3] 3L_11126953_SNP [dm6]	T	G	4.151e^-4	0.788	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	3140901	X_3140901_DEL [dm3] X_3246868_DEL [dm6]	TT	T	4.156e^-4	0.788	INTRON dnc
X	5946369	X_5946369_SNP [dm3] X_6052336_SNP [dm6]	T	A	4.156e^-4	0.788	INTRON CG5921
3R	3895159	3R_3895159_DEL [dm3] 3R_8069437_DEL [dm6]	ATGTCAG	A	4.159e^-4	0.788	INTRON mAChR-B
3L	14916578	3L_14916578_INS [dm3] 3L_14923478_INS [dm6]	A	AAATGAAGAA	4.161e^-4	0.788	INTRON DCX-EMAP
3R	25267098	3R_25267098_SNP [dm3] 3R_29441376_SNP [dm6]	A	G	4.166e^-4	0.788	INTRON Ptp99A
3L	4512167	3L_4512167_SNP [dm3] 3L_4512167_SNP [dm6]	G	C	4.169e^-4	0.788	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16534931	X_16534931_SNP [dm3] X_16640898_SNP [dm6]	G	T	4.173e^-4	0.788	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5079689	3L_5079689_SNP [dm3] 3L_5079689_SNP [dm6]	A	C	4.174e^-4	0.788	UPSTREAM Con INTERGENIC
X	14767630	X_14767630_SNP [dm3] X_14873597_SNP [dm6]	C	G	4.201e^-4	0.788	INTRON Flo2
3R	17376553	3R_17376553_INS [dm3] 3R_21550831_INS [dm6]	A	AT	4.204e^-4	0.788	INTRON slou
3L	10663485	3L_10663485_SNP [dm3] 3L_10670385_SNP [dm6]	C	A	4.210e^-4	0.788	INTRON simj	TF binding site BDTNP1_TFBS_dl
3R	16880981	3R_16880981_DEL [dm3] 3R_21055259_DEL [dm6]	GA	G	4.215e^-4	0.788	INTRON Mvl
3L	14907682	3L_14907682_SNP [dm3] 3L_14914582_SNP [dm6]	T	G	4.217e^-4	0.788	INTRON DCX-EMAP
3L	24249086	3L_24249086_SNP [dm3] 3L_24255986_SNP [dm6]	A	T	4.217e^-4	0.788	INTRON Snap25

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.061e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.6935	0.0957
In_3R_P	6.2076	0.0449

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2220 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12215370	X_12215370_SNP [dm3] X_12321337_SNP [dm6]	A	T	1.330e^-6	0.594	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
2L	905650	2L_905650_SNP [dm3] 2L_905650_SNP [dm6]	G	A	1.799e^-6	0.594	INTERGENIC
3R	17628117	3R_17628117_SNP [dm3] 3R_21802395_SNP [dm6]	C	G	2.578e^-6	0.594	INTRON CASK	TF binding site BDTNP1_TFBS_twi
X	4786089	X_4786089_SNP [dm3] X_4892056_SNP [dm6]	G	A	2.923e^-6	0.594	INTRON CG42594
3R	21708537	3R_21708537_SNP [dm3] 3R_25882815_SNP [dm6]	A	T	2.968e^-6	0.594	INTRON SppL
2L	13430888	2L_13430888_SNP [dm3] 2L_13430888_SNP [dm6]	T	C	3.044e^-6	0.594	INTRON CG42784
3R	21708536	3R_21708536_SNP [dm3] 3R_25882814_SNP [dm6]	A	G	4.231e^-6	0.594	INTRON SppL
2R	16173125	2R_16173125_SNP [dm3] 2R_20285620_SNP [dm6]	T	C	4.457e^-6	0.594	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21708517	3R_21708517_SNP [dm3] 3R_25882795_SNP [dm6]	T	A	4.704e^-6	0.594	INTRON SppL
3R	21708575	3R_21708575_SNP [dm3] 3R_25882853_SNP [dm6]	A	T	4.735e^-6	0.594	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3R	21708584	3R_21708584_SNP [dm3] 3R_25882862_SNP [dm6]	A	T	4.735e^-6	0.594	INTRON SppL	TF binding site BDTNP1_TFBS_dl
2R	15193193	2R_15193193_SNP [dm3] 2R_19305688_SNP [dm6]	G	A	5.116e^-6	0.594	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
X	20436419	X_20436419_SNP [dm3] X_20565392_SNP [dm6]	C	G	5.336e^-6	0.594	SYNONYMOUS_CODING RunxB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11063512	2R_11063512_SNP [dm3] 2R_15176007_SNP [dm6]	A	G	6.376e^-6	0.594	INTRON igl
X	9689856	X_9689856_SNP [dm3] X_9795823_SNP [dm6]	A	T	6.828e^-6	0.594	INTRON CG32698
X	4786069	X_4786069_DEL [dm3] X_4892036_DEL [dm6]	TGCACAGCTTCTCAGC...	AT	6.830e^-6	0.594	INTRON CG42594
3R	19562656	3R_19562656_SNP [dm3] 3R_23736934_SNP [dm6]	G	T	6.869e^-6	0.594	INTRON Hmgcr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15251358	2R_15251358_SNP [dm3] 2R_19363853_SNP [dm6]	G	T	7.034e^-6	0.594	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2L	7187631	2L_7187631_SNP [dm3] 2L_7187631_SNP [dm6]	C	T	7.059e^-6	0.594	SYNONYMOUS_CODING CG4496
X	9248357	X_9248357_SNP [dm3] X_9354324_SNP [dm6]	A	G	7.154e^-6	0.594	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15356846	3R_15356846_SNP [dm3] 3R_19531124_SNP [dm6]	G	T	7.403e^-6	0.594	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18053099	2R_18053099_SNP [dm3] 2R_22165594_SNP [dm6]	A	G	8.244e^-6	0.594	UPSTREAM CG34206 INTRON a
3R	25550131	3R_25550131_SNP [dm3] 3R_29724409_SNP [dm6]	A	T	8.312e^-6	0.594	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	18000205	3L_18000205_SNP [dm3] 3L_18007105_SNP [dm6]	G	C	8.807e^-6	0.594	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18053103	2R_18053103_DEL [dm3] 2R_22165598_DEL [dm6]	AA	A	9.075e^-6	0.594	INTRON a
2L	8791522	2L_8791522_SNP [dm3] 2L_8791522_SNP [dm6]	T	C	9.092e^-6	0.594	INTERGENIC
2R	13795624	2R_13795624_SNP [dm3] 2R_17908119_SNP [dm6]	A	T	9.517e^-6	0.594	INTRON Elk
2L	5444895	2L_5444895_SNP [dm3] 2L_5444895_SNP [dm6]	T	A	1.034e^-5	0.594	INTERGENIC
2R	15251331	2R_15251331_SNP [dm3] 2R_19363826_SNP [dm6]	T	G	1.042e^-5	0.594	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2R	15251375	2R_15251375_SNP [dm3] 2R_19363870_SNP [dm6]	A	T	1.042e^-5	0.594	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2R	13795626	2R_13795626_SNP [dm3] 2R_17908121_SNP [dm6]	T	A	1.054e^-5	0.594	INTRON Elk
3R	23971143	3R_23971143_SNP [dm3] 3R_28145421_SNP [dm6]	G	C	1.068e^-5	0.594	INTERGENIC
3R	3891035	3R_3891035_SNP [dm3] 3R_8065313_SNP [dm6]	C	T	1.128e^-5	0.594	INTRON mAChR-B
2R	11063461	2R_11063461_SNP [dm3] 2R_15175956_SNP [dm6]	T	A	1.129e^-5	0.594	INTRON igl
3R	3891824	3R_3891824_SNP [dm3] 3R_8066102_SNP [dm6]	C	G	1.152e^-5	0.594	INTRON mAChR-B
3L	13341327	3L_13341327_SNP [dm3] 3L_13348227_SNP [dm6]	A	C	1.157e^-5	0.594	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15251392	2R_15251392_SNP [dm3] 2R_19363887_SNP [dm6]	A	T	1.183e^-5	0.594	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
X	17664276	X_17664276_DEL [dm3] X_17770243_DEL [dm6]	AAAAAAAGTGTTAAGG...	A	1.250e^-5	0.594	INTRON unc-4
3R	16651830	3R_16651830_SNP [dm3] 3R_20826108_SNP [dm6]	G	A	1.264e^-5	0.594	SYNONYMOUS_CODING AdSS UPSTREAM CR44047	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17333114	2R_17333114_SNP [dm3] 2R_21445609_SNP [dm6]	G	C	1.295e^-5	0.594	INTRON Sdc
3L	12177686	3L_12177686_SNP [dm3] 3L_12184586_SNP [dm6]	G	T	1.298e^-5	0.594	UPSTREAM CG6910 INTERGENIC
X	20431285	X_20431285_SNP [dm3] X_20560258_SNP [dm6]	A	G	1.354e^-5	0.605	INTRON RunxB
3L	12385790	3L_12385790_SNP [dm3] 3L_12392690_SNP [dm6]	C	T	1.418e^-5	0.618	INTERGENIC
3L	18643448	3L_18643448_SNP [dm3] 3L_18650348_SNP [dm6]	G	C	1.475e^-5	0.621	INTRON MYPT-75D
X	10213337	X_10213337_SNP [dm3] X_10319304_SNP [dm6]	A	G	1.492e^-5	0.621	INTRON alpha-Man-I
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	1.625e^-5	0.621	INTRON mAChR-B
3R	3895159	3R_3895159_DEL [dm3] 3R_8069437_DEL [dm6]	ATGTCAG	A	1.629e^-5	0.621	INTRON mAChR-B
2L	6292769	2L_6292769_SNP [dm3] 2L_6292769_SNP [dm6]	T	C	1.652e^-5	0.621	INTRON Ddr
3R	23639356	3R_23639356_SNP [dm3] 3R_27813634_SNP [dm6]	G	C	1.697e^-5	0.621	INTRON CG34353
X	17021417	X_17021417_SNP [dm3] X_17127384_SNP [dm6]	A	C	1.719e^-5	0.621	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
3R	3939424	3R_3939424_SNP [dm3] 3R_8113702_SNP [dm6]	C	T	1.781e^-5	0.621	INTRON puc EXON CR44331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10968907	2R_10968907_SNP [dm3] 2R_15081402_SNP [dm6]	A	C	1.812e^-5	0.621	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17333111	2R_17333111_SNP [dm3] 2R_21445606_SNP [dm6]	G	T	1.818e^-5	0.621	INTRON Sdc
2R	13795621	2R_13795621_SNP [dm3] 2R_17908116_SNP [dm6]	A	G	1.824e^-5	0.621	INTRON Elk
3L	9347923	3L_9347923_SNP [dm3] 3L_9354823_SNP [dm6]	A	T	1.825e^-5	0.621	INTRON UGP & 1 other
X	16939659	X_16939659_SNP [dm3] X_17045626_SNP [dm6]	T	C	1.912e^-5	0.621	INTRON CG45002
3R	25845124	3R_25845124_SNP [dm3] 3R_30019402_SNP [dm6]	G	A	1.921e^-5	0.621	SYNONYMOUS_CODING Mgat2
3L	17188663	3L_17188663_SNP [dm3] 3L_17195563_SNP [dm6]	C	T	1.946e^-5	0.621	INTRON Rbp6	TF binding site mE1_TFBS_inv
2L	7088033	2L_7088033_SNP [dm3] 2L_7088033_SNP [dm6]	C	T	1.984e^-5	0.621	INTERGENIC
3R	16716917	3R_16716917_SNP [dm3] 3R_20891195_SNP [dm6]	G	T	1.985e^-5	0.621	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	19077738	2R_19077738_SNP [dm3] 2R_23190215_SNP [dm6]	T	A	2.083e^-5	0.64	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	2.240e^-5	0.663	INTRON sick
2L	5509301	2L_5509301_SNP [dm3] 2L_5509301_SNP [dm6]	C	T	2.266e^-5	0.663	INTERGENIC
2R	11079696	2R_11079696_SNP [dm3] 2R_15192191_SNP [dm6]	T	C	2.306e^-5	0.663	DOWNSTREAM Sfp51E INTERGENIC
2R	7035747	2R_7035747_SNP [dm3] 2R_11148242_SNP [dm6]	G	A	2.324e^-5	0.663	SYNONYMOUS_CODING CG12391 INTRON CG13229	TF binding site mE1_TFBS_cad
X	6425207	X_6425207_SNP [dm3] X_6531174_SNP [dm6]	A	G	2.335e^-5	0.663	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other
X	12874359	X_12874359_SNP [dm3] X_12980326_SNP [dm6]	T	C	2.389e^-5	0.669	INTERGENIC
3R	9389208	3R_9389208_SNP [dm3] 3R_13563486_SNP [dm6]	C	T	2.444e^-5	0.67	INTERGENIC
X	18847792	X_18847792_SNP [dm3] X_18953759_SNP [dm6]	C	T	2.463e^-5	0.67	INTRON CG43759
3R	26878052	3R_26878052_SNP [dm3] 3R_31052330_SNP [dm6]	A	G	2.730e^-5	0.713	NON_SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670
2R	11063482	2R_11063482_SNP [dm3] 2R_15175977_SNP [dm6]	C	T	2.734e^-5	0.713	INTRON igl
3R	26878268	3R_26878268_SNP [dm3] 3R_31052546_SNP [dm6]	A	G	2.737e^-5	0.713	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10416114	2R_10416114_SNP [dm3] 2R_14528609_SNP [dm6]	G	A	2.856e^-5	0.727	INTRON ttv
3R	19032923	3R_19032923_SNP [dm3] 3R_23207201_SNP [dm6]	A	G	2.881e^-5	0.727	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	14611594	3R_14611594_SNP [dm3] 3R_18785872_SNP [dm6]	A	C	2.906e^-5	0.727	INTRON CG7720
3L	1563565	3L_1563565_SNP [dm3] 3L_1563565_SNP [dm6]	A	T	2.955e^-5	0.729	INTRON CG7879
2L	2999754	2L_2999754_INS [dm3] 2L_2999754_INS [dm6]	A	ACAAA	2.996e^-5	0.729	UTR_5_PRIME CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
X	16890971	X_16890971_SNP [dm3] X_16996938_SNP [dm6]	G	A	3.032e^-5	0.729	INTRON CG45002
2L	19880241	2L_19880241_DEL [dm3] 2L_19880241_DEL [dm6]	TAAATGGCCT	T	3.166e^-5	0.735	INTRON sick
3R	21624469	3R_21624469_SNP [dm3] 3R_25798747_SNP [dm6]	T	C	3.184e^-5	0.735	UPSTREAM CR43847 INTERGENIC
2L	14566262	2L_14566262_SNP [dm3] 2L_14566262_SNP [dm6]	A	G	3.202e^-5	0.735	INTERGENIC
X	3148263	X_3148263_SNP [dm3] X_3254230_SNP [dm6]	T	A	3.214e^-5	0.735	INTRON dnc
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	3.296e^-5	0.745	INTRON AdipoR
3R	21708628	3R_21708628_DEL [dm3] 3R_25882906_DEL [dm6]	AAA	A	3.406e^-5	0.753	INTRON SppL	TF binding site BDTNP1_TFBS_dl
2R	17333113	2R_17333113_SNP [dm3] 2R_21445608_SNP [dm6]	C	G	3.414e^-5	0.753	INTRON Sdc
2L	16198262	2L_16198262_SNP [dm3] 2L_16198262_SNP [dm6]	A	G	3.524e^-5	0.769	INTERGENIC
X	12443360	X_12443360_SNP [dm3] X_12549327_SNP [dm6]	C	T	3.741e^-5	0.774	INTRON CG43921
X	18845713	X_18845713_SNP [dm3] X_18951680_SNP [dm6]	G	A	3.859e^-5	0.774	INTRON CG43759
2L	5509295	2L_5509295_SNP [dm3] 2L_5509295_SNP [dm6]	T	A	3.868e^-5	0.774	INTERGENIC
2R	15251359	2R_15251359_SNP [dm3] 2R_19363854_SNP [dm6]	C	T	3.960e^-5	0.774	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2R	15251112	2R_15251112_SNP [dm3] 2R_19363607_SNP [dm6]	C	T	3.997e^-5	0.774	UPSTREAM CG10051 DOWNSTREAM CG11961 INTERGENIC	TF binding site mE1_TFBS_cad
2L	737740	2L_737740_SNP [dm3] 2L_737740_SNP [dm6]	C	A	4.104e^-5	0.774	UTR_3_PRIME Eaat2
3R	22947150	3R_22947150_SNP [dm3] 3R_27121428_SNP [dm6]	G	A	4.154e^-5	0.774	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
3L	18000216	3L_18000216_SNP [dm3] 3L_18007116_SNP [dm6]	T	G	4.155e^-5	0.774	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2409065	X_2409065_SNP [dm3] X_2515032_SNP [dm6]	T	C	4.173e^-5	0.774	INTRON trol
2L	18586932	2L_18586932_SNP [dm3] 2L_18586932_SNP [dm6]	C	T	4.198e^-5	0.774	INTRON Pde11
2L	5444785	2L_5444785_SNP [dm3] 2L_5444785_SNP [dm6]	A	T	4.241e^-5	0.774	INTERGENIC
2L	5444787	2L_5444787_INS [dm3] 2L_5444787_INS [dm6]	A	AT	4.297e^-5	0.774	INTERGENIC
2L	5444789	2L_5444789_SNP [dm3] 2L_5444789_SNP [dm6]	T	A	4.297e^-5	0.774	INTERGENIC
2L	5444822	2L_5444822_INS [dm3] 2L_5444822_INS [dm6]	G	GGGCATTA	4.297e^-5	0.774	INTERGENIC
2L	5444827	2L_5444827_MNP [dm3] 2L_5444827_MNP [dm6]	GAA	TTG	4.297e^-5	0.774	INTERGENIC
2L	5444865	2L_5444865_SNP [dm3] 2L_5444865_SNP [dm6]	G	A	4.297e^-5	0.774	INTERGENIC
2L	5444874	2L_5444874_INS [dm3] 2L_5444874_INS [dm6]	T	TTGAAAACA	4.297e^-5	0.774	INTERGENIC
2R	17333108	2R_17333108_SNP [dm3] 2R_21445603_SNP [dm6]	C	T	4.320e^-5	0.774	INTRON Sdc
X	4131416	X_4131416_SNP [dm3] X_4237383_SNP [dm6]	G	A	4.333e^-5	0.774	INTERGENIC
2L	4206336	2L_4206336_SNP [dm3] 2L_4206336_SNP [dm6]	C	T	4.498e^-5	0.789	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4206516	2L_4206516_SNP [dm3] 2L_4206516_SNP [dm6]	A	G	4.504e^-5	0.789	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8183878	3R_8183878_SNP [dm3] 3R_12358156_SNP [dm6]	G	A	4.542e^-5	0.789	INTERGENIC
3R	16717004	3R_16717004_SNP [dm3] 3R_20891282_SNP [dm6]	G	T	4.644e^-5	0.793	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25846960	3R_25846960_SNP [dm3] 3R_30021238_SNP [dm6]	C	T	4.678e^-5	0.793	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	22604195	3R_22604195_SNP [dm3] 3R_26778473_SNP [dm6]	C	T	4.741e^-5	0.793	INTERGENIC
2L	3347607	2L_3347607_SNP [dm3] 2L_3347607_SNP [dm6]	G	A	4.816e^-5	0.793	INTRON E23
X	13566258	X_13566258_SNP [dm3] X_13672225_SNP [dm6]	T	G	4.820e^-5	0.793	INTRON CG15760	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5509314	2L_5509314_SNP [dm3] 2L_5509314_SNP [dm6]	T	C	4.822e^-5	0.793	INTERGENIC
3L	10542142	3L_10542142_SNP [dm3] 3L_10549042_SNP [dm6]	T	C	5.037e^-5	0.794	INTRON A2bp1
2L	6018285	2L_6018285_SNP [dm3] 2L_6018285_SNP [dm6]	G	T	5.041e^-5	0.794	INTRON H2.0
2L	19421461	2L_19421461_SNP [dm3] 2L_19421461_SNP [dm6]	T	C	5.102e^-5	0.794	INTRON Pax
2R	20265849	2R_20265849_SNP [dm3] 2R_24378326_SNP [dm6]	A	G	5.155e^-5	0.794	NON_SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
X	19118691	X_19118691_SNP [dm3] X_19224658_SNP [dm6]	G	A	5.171e^-5	0.794	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5444903	2L_5444903_DEL [dm3] 2L_5444903_DEL [dm6]	TT	G	5.235e^-5	0.794	INTERGENIC
2R	15251450	2R_15251450_SNP [dm3] 2R_19363945_SNP [dm6]	G	T	5.312e^-5	0.794	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
3R	20352479	3R_20352479_SNP [dm3] 3R_24526757_SNP [dm6]	G	A	5.357e^-5	0.794	NON_SYNONYMOUS_CODING CG13618
2L	7302828	2L_7302828_INS [dm3] 2L_7302828_INS [dm6]	A	AA	5.383e^-5	0.794	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18643873	3L_18643873_SNP [dm3] 3L_18650773_SNP [dm6]	G	T	5.392e^-5	0.794	INTRON MYPT-75D
2L	15196955	2L_15196955_SNP [dm3] 2L_15196955_SNP [dm6]	A	T	5.459e^-5	0.794	INTRON CG4168
2L	22198363	2L_22198363_SNP [dm3] 2L_22198363_SNP [dm6]	G	A	5.480e^-5	0.794	UTR_5_PRIME Ir40a UPSTREAM Ir40a INTRON Ir40a
2R	15251652	2R_15251652_SNP [dm3] 2R_19364147_SNP [dm6]	C	T	5.487e^-5	0.794	INTRON CG10051	TF binding site mE1_TFBS_cad
3L	2120161	3L_2120161_SNP [dm3] 3L_2120161_SNP [dm6]	A	C	5.513e^-5	0.794	INTRON zormin
2R	19537645	2R_19537645_SNP [dm3] 2R_23650122_SNP [dm6]	T	G	5.530e^-5	0.794	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8854776	3L_8854776_SNP [dm3] 3L_8861676_SNP [dm6]	A	G	5.560e^-5	0.794	INTRON dally
3R	16891880	3R_16891880_SNP [dm3] 3R_21066158_SNP [dm6]	A	C	5.738e^-5	0.794	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	25845115	3R_25845115_SNP [dm3] 3R_30019393_SNP [dm6]	A	G	5.751e^-5	0.794	SYNONYMOUS_CODING Mgat2
3L	10310798	3L_10310798_SNP [dm3] 3L_10317698_SNP [dm6]	A	G	5.757e^-5	0.794	INTERGENIC
3R	25846942	3R_25846942_SNP [dm3] 3R_30021220_SNP [dm6]	A	T	5.828e^-5	0.794	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	16198259	2L_16198259_SNP [dm3] 2L_16198259_SNP [dm6]	G	A	5.879e^-5	0.794	INTERGENIC
3R	21708757	3R_21708757_SNP [dm3] 3R_25883035_SNP [dm6]	T	G	5.883e^-5	0.794	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3L	10522779	3L_10522779_SNP [dm3] 3L_10529679_SNP [dm6]	G	C	5.899e^-5	0.794	INTRON A2bp1
3L	11388531	3L_11388531_SNP [dm3] 3L_11395431_SNP [dm6]	A	C	5.923e^-5	0.794	SYNONYMOUS_CODING CG11726
3L	15695729	3L_15695729_SNP [dm3] 3L_15702629_SNP [dm6]	G	T	5.967e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5444852	2L_5444852_SNP [dm3] 2L_5444852_SNP [dm6]	C	A	5.979e^-5	0.794	INTERGENIC
3L	5819538	3L_5819538_SNP [dm3] 3L_5826438_SNP [dm6]	G	A	6.005e^-5	0.794	INTRON vn	TF binding site mE1_TFBS_chinmo
X	9689849	X_9689849_SNP [dm3] X_9795816_SNP [dm6]	A	C	6.012e^-5	0.794	INTRON CG32698
2L	905519	2L_905519_SNP [dm3] 2L_905519_SNP [dm6]	T	A	6.099e^-5	0.794	INTERGENIC
X	17664068	X_17664068_SNP [dm3] X_17770035_SNP [dm6]	T	A	6.099e^-5	0.794	INTRON unc-4
3R	21708484	3R_21708484_SNP [dm3] 3R_25882762_SNP [dm6]	A	T	6.205e^-5	0.803	INTRON SppL	TF binding site BDTNP1_TFBS_dl
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	6.445e^-5	0.823	INTRON qsm
3L	4421331	3L_4421331_SNP [dm3] 3L_4421331_SNP [dm6]	G	A	6.469e^-5	0.823	UPSTREAM CG15020 DOWNSTREAM DOR INTERGENIC
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	6.571e^-5	0.823	INTRON AdipoR
3R	16717119	3R_16717119_SNP [dm3] 3R_20891397_SNP [dm6]	G	T	6.588e^-5	0.823	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21908938	3R_21908938_SNP [dm3] 3R_26083216_SNP [dm6]	C	A	6.595e^-5	0.823	INTRON dys
2L	905526	2L_905526_SNP [dm3] 2L_905526_SNP [dm6]	A	T	6.625e^-5	0.823	INTERGENIC
X	16710431	X_16710431_SNP [dm3] X_16816398_SNP [dm6]	A	G	6.671e^-5	0.823	UPSTREAM CG4829 & 1 other INTRON CG4829
3R	19491355	3R_19491355_SNP [dm3] 3R_23665633_SNP [dm6]	T	A	6.778e^-5	0.826	INTRON CG31145
2L	5444781	2L_5444781_SNP [dm3] 2L_5444781_SNP [dm6]	A	T	6.810e^-5	0.826	INTERGENIC
2L	5445375	2L_5445375_SNP [dm3] 2L_5445375_SNP [dm6]	G	C	6.882e^-5	0.826	INTERGENIC
2L	10819043	2L_10819043_SNP [dm3] 2L_10819043_SNP [dm6]	T	G	6.890e^-5	0.826	UPSTREAM CG6508 INTRON Nos
3R	8861685	3R_8861685_SNP [dm3] 3R_13035963_SNP [dm6]	C	T	6.971e^-5	0.826	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14432622	3L_14432622_SNP [dm3] 3L_14439522_SNP [dm6]	A	T	6.996e^-5	0.826	INTRON bbg
3R	14706012	3R_14706012_SNP [dm3] 3R_18880290_SNP [dm6]	T	C	7.033e^-5	0.826	INTERGENIC
3L	5982691	3L_5982691_SNP [dm3] 3L_5989591_SNP [dm6]	G	T	7.048e^-5	0.826	INTERGENIC
3L	1453417	3L_1453417_SNP [dm3] 3L_1453417_SNP [dm6]	G	A	7.102e^-5	0.827	INTRON Ptp61F
2R	10544441	2R_10544441_SNP [dm3] 2R_14656936_SNP [dm6]	C	T	7.194e^-5	0.829	SYNONYMOUS_CODING Adgf-E
2R	10820974	2R_10820974_SNP [dm3] 2R_14933469_SNP [dm6]	G	A	7.249e^-5	0.829	UPSTREAM CG12853 & 1 other INTRON CG10253	TF binding site mE1_TFBS_Trl
2L	8791405	2L_8791405_SNP [dm3] 2L_8791405_SNP [dm6]	T	C	7.298e^-5	0.829	INTERGENIC
3R	19906138	3R_19906138_MNP [dm3] 3R_24080416_MNP [dm6]	GTG	AGT	7.395e^-5	0.829	INTRON 4EHP
X	14763396	X_14763396_INS [dm3] X_14869363_INS [dm6]	A	ATTCA	7.407e^-5	0.829	INTRON Flo2 & 1 other
X	17664526	X_17664526_SNP [dm3] X_17770493_SNP [dm6]	A	G	7.470e^-5	0.829	INTRON unc-4
2R	10968972	2R_10968972_SNP [dm3] 2R_15081467_SNP [dm6]	C	A	7.517e^-5	0.829	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17664555	X_17664555_DEL [dm3] X_17770522_DEL [dm6]	TC	T	7.532e^-5	0.829	INTRON unc-4
2L	3347601	2L_3347601_INS [dm3] 2L_3347601_INS [dm6]	T	TT	7.554e^-5	0.829	INTRON E23
2L	3347608	2L_3347608_SNP [dm3] 2L_3347608_SNP [dm6]	T	C	7.554e^-5	0.829	INTRON E23
2R	16575271	2R_16575271_SNP [dm3] 2R_20687766_SNP [dm6]	G	C	7.629e^-5	0.832	UPSTREAM Gr57a INTERGENIC
2L	4915843	2L_4915843_SNP [dm3] 2L_4915843_SNP [dm6]	T	A	7.753e^-5	0.835	UPSTREAM hoe1 INTRON hoe1
3L	21910242	3L_21910242_SNP [dm3] 3L_21917142_SNP [dm6]	C	T	7.785e^-5	0.835	INTRON mub	TF binding site mE1_TFBS_Trl
2L	5444821	2L_5444821_SNP [dm3] 2L_5444821_SNP [dm6]	T	G	7.941e^-5	0.835	INTERGENIC
3L	10218472	3L_10218472_SNP [dm3] 3L_10225372_SNP [dm6]	A	C	7.946e^-5	0.835	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	14077989	X_14077989_SNP [dm3] X_14183956_SNP [dm6]	A	C	7.978e^-5	0.835	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
3R	15287267	3R_15287267_SNP [dm3] 3R_19461545_SNP [dm6]	A	C	8.008e^-5	0.835	DOWNSTREAM CG6255 INTRON Dys	TF binding site BDTNP1_TFBS_dl
3R	26924576	3R_26924576_SNP [dm3] 3R_31098854_SNP [dm6]	A	G	8.025e^-5	0.835	DOWNSTREAM CG15553 INTERGENIC	TF binding site mE1_TFBS_inv
2L	5444752	2L_5444752_SNP [dm3] 2L_5444752_SNP [dm6]	G	A	8.033e^-5	0.835	INTERGENIC
X	14788892	X_14788892_SNP [dm3] X_14894859_SNP [dm6]	A	G	8.136e^-5	0.835	INTRON Flo2 & 1 other
3R	12334359	3R_12334359_SNP [dm3] 3R_16508637_SNP [dm6]	G	A	8.153e^-5	0.835	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	16362664	X_16362664_SNP [dm3] X_16468631_SNP [dm6]	G	A	8.208e^-5	0.835	INTRON para
X	10263690	X_10263690_SNP [dm3] X_10369657_SNP [dm6]	G	A	8.235e^-5	0.835	INTRON CG17841
2L	2654050	2L_2654050_SNP [dm3] 2L_2654050_SNP [dm6]	A	G	8.239e^-5	0.835	UTR_5_PRIME Or23a DOWNSTREAM Prosbeta4R1
2R	3927177	2R_3927177_SNP [dm3] 2R_8039672_SNP [dm6]	T	C	8.292e^-5	0.836	INTRON Optix
3R	22081365	3R_22081365_SNP [dm3] 3R_26255643_SNP [dm6]	C	A	8.394e^-5	0.836	DOWNSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_bcd
2R	11047480	2R_11047480_SNP [dm3] 2R_15159975_SNP [dm6]	T	C	8.424e^-5	0.836	UPSTREAM CR43831 INTRON igl
2L	7270737	2L_7270737_SNP [dm3] 2L_7270737_SNP [dm6]	T	C	8.497e^-5	0.836	INTRON Wnt4
X	12875113	X_12875113_SNP [dm3] X_12981080_SNP [dm6]	A	G	8.498e^-5	0.836	INTERGENIC
X	12874374	X_12874374_SNP [dm3] X_12980341_SNP [dm6]	A	G	8.552e^-5	0.836	INTERGENIC
X	16024227	X_16024227_SNP [dm3] X_16130194_SNP [dm6]	C	T	8.603e^-5	0.836	INTRON disco-r
3L	12301519	3L_12301519_SNP [dm3] 3L_12308419_SNP [dm6]	G	A	8.743e^-5	0.836	INTERGENIC
2L	16198274	2L_16198274_SNP [dm3] 2L_16198274_SNP [dm6]	C	T	8.766e^-5	0.836	INTERGENIC
X	4786132	X_4786132_SNP [dm3] X_4892099_SNP [dm6]	A	T	8.802e^-5	0.836	INTRON CG42594
3R	18522928	3R_18522928_SNP [dm3] 3R_22697206_SNP [dm6]	A	G	8.925e^-5	0.836	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad
X	4786011	X_4786011_SNP [dm3] X_4891978_SNP [dm6]	G	A	8.961e^-5	0.836	INTRON CG42594
X	20875934	X_20875934_SNP [dm3] X_21004907_SNP [dm6]	T	C	9.010e^-5	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	26877969	3R_26877969_SNP [dm3] 3R_31052247_SNP [dm6]	T	C	9.011e^-5	0.836	SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670
3R	19562715	3R_19562715_SNP [dm3] 3R_23736993_SNP [dm6]	C	G	9.023e^-5	0.836	INTRON Hmgcr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3238792	3R_3238792_SNP [dm3] 3R_7413070_SNP [dm6]	G	C	9.085e^-5	0.836	INTERGENIC
3L	7951606	3L_7951606_SNP [dm3] 3L_7958506_SNP [dm6]	G	C	9.148e^-5	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21801423	3L_21801423_SNP [dm3] 3L_21808323_SNP [dm6]	T	C	9.237e^-5	0.836	UPSTREAM eg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12628072	X_12628072_SNP [dm3] X_12734039_SNP [dm6]	G	T	9.270e^-5	0.836	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1755773	2R_1755773_SNP [dm3] 2R_5868268_SNP [dm6]	A	G	9.334e^-5	0.836	INTERGENIC
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	9.402e^-5	0.836	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	9389177	3R_9389177_INS [dm3] 3R_13563455_INS [dm6]	G	GAGCTATTCGG...	9.416e^-5	0.836	INTERGENIC
2R	17595542	2R_17595542_SNP [dm3] 2R_21708037_SNP [dm6]	A	C	9.433e^-5	0.836	UPSTREAM HmgZ DOWNSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5624954	3L_5624954_SNP [dm3] 3L_5631854_SNP [dm6]	G	A	9.486e^-5	0.836	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
2L	19421283	2L_19421283_SNP [dm3] 2L_19421283_SNP [dm6]	A	G	9.546e^-5	0.836	INTRON Pax
3R	16421756	3R_16421756_SNP [dm3] 3R_20596034_SNP [dm6]	C	T	9.586e^-5	0.836	INTRON bon	TF binding site BDTNP1_TFBS_dl
3L	12207704	3L_12207704_SNP [dm3] 3L_12214604_SNP [dm6]	A	G	9.634e^-5	0.836	UPSTREAM app INTRON app
X	17664545	X_17664545_SNP [dm3] X_17770512_SNP [dm6]	C	T	9.700e^-5	0.836	INTRON unc-4
3L	3340383	3L_3340383_SNP [dm3] 3L_3340383_SNP [dm6]	T	C	9.816e^-5	0.836	INTRON kst
3R	19836806	3R_19836806_SNP [dm3] 3R_24011084_SNP [dm6]	C	T	9.823e^-5	0.836	INTRON KrT95D
2R	20215851	2R_20215851_SNP [dm3] 2R_24328328_SNP [dm6]	G	T	9.823e^-5	0.836	UPSTREAM CR44810 INTRON CR44810
3R	23641408	3R_23641408_SNP [dm3] 3R_27815686_SNP [dm6]	C	A	9.838e^-5	0.836	INTRON CG34353
3R	24016152	3R_24016152_SNP [dm3] 3R_28190430_SNP [dm6]	T	C	9.884e^-5	0.836	INTRON CG34354
3R	23207321	3R_23207321_SNP [dm3] 3R_27381599_SNP [dm6]	A	G	9.893e^-5	0.836	UTR_3_PRIME side INTRON side
3R	16418685	3R_16418685_SNP [dm3] 3R_20592963_SNP [dm6]	T	C	9.940e^-5	0.836	UPSTREAM bon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16418718	3R_16418718_SNP [dm3] 3R_20592996_SNP [dm6]	T	A	9.940e^-5	0.836	UPSTREAM bon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	18912286	2L_18912286_SNP [dm3] 2L_18912286_SNP [dm6]	A	G	9.975e^-5	0.836	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26330761	3R_26330761_SNP [dm3] 3R_30505039_SNP [dm6]	T	C	1.005e^-4	0.836	SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG15539
2L	16235303	2L_16235303_DEL [dm3] 2L_16235303_DEL [dm6]	TTT	GG	1.008e^-4	0.836	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16198260	2L_16198260_SNP [dm3] 2L_16198260_SNP [dm6]	T	A	1.015e^-4	0.836	INTERGENIC
2L	16198271	2L_16198271_SNP [dm3] 2L_16198271_SNP [dm6]	A	G	1.016e^-4	0.836	INTERGENIC
3R	7772157	3R_7772157_SNP [dm3] 3R_11946435_SNP [dm6]	A	G	1.018e^-4	0.836	INTRON Cad87A
2R	9409319	2R_9409319_SNP [dm3] 2R_13521814_SNP [dm6]	A	G	1.022e^-4	0.836	UTR_5_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
2L	5444794	2L_5444794_INS [dm3] 2L_5444794_INS [dm6]	T	TATATA	1.022e^-4	0.836	INTERGENIC
X	20436532	X_20436532_SNP [dm3] X_20565505_SNP [dm6]	C	G	1.054e^-4	0.836	NON_SYNONYMOUS_CODING RunxB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17664572	X_17664572_INS [dm3] X_17770539_INS [dm6]	G	GC	1.055e^-4	0.836	INTRON unc-4
3R	15520870	3R_15520870_SNP [dm3] 3R_19695148_SNP [dm6]	C	T	1.060e^-4	0.836	INTRON Naam
2L	8252790	2L_8252790_SNP [dm3] 2L_8252790_SNP [dm6]	A	T	1.071e^-4	0.836	INTRON CG8086
3L	3340905	3L_3340905_SNP [dm3] 3L_3340905_SNP [dm6]	T	C	1.074e^-4	0.836	INTRON kst
3L	14432696	3L_14432696_SNP [dm3] 3L_14439596_SNP [dm6]	C	A	1.078e^-4	0.836	INTRON bbg
3L	21922083	3L_21922083_SNP [dm3] 3L_21928983_SNP [dm6]	A	G	1.081e^-4	0.836	UTR_3_PRIME mub
3L	6619013	3L_6619013_SNP [dm3] 3L_6625913_SNP [dm6]	C	T	1.089e^-4	0.836	INTRON GluRIA
3R	16891841	3R_16891841_SNP [dm3] 3R_21066119_SNP [dm6]	T	G	1.097e^-4	0.836	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	16710988	3R_16710988_SNP [dm3] 3R_20885266_SNP [dm6]	T	A	1.103e^-4	0.836	INTERGENIC
3L	2120162	3L_2120162_SNP [dm3] 3L_2120162_SNP [dm6]	C	A	1.119e^-4	0.836	INTRON zormin
3L	1630271	3L_1630271_SNP [dm3] 3L_1630271_SNP [dm6]	G	A	1.120e^-4	0.836	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC
3L	16973326	3L_16973326_SNP [dm3] 3L_16980226_SNP [dm6]	A	T	1.135e^-4	0.836	INTRON Exn
3R	20897699	3R_20897699_SNP [dm3] 3R_25071977_SNP [dm6]	A	G	1.143e^-4	0.836	SYNONYMOUS_CODING CG11836 DOWNSTREAM CG9996	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	25963825	3R_25963825_SNP [dm3] 3R_30138103_SNP [dm6]	G	A	1.150e^-4	0.836	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad
2L	7386030	2L_7386030_SNP [dm3] 2L_7386030_SNP [dm6]	T	C	1.154e^-4	0.836	SYNONYMOUS_CODING CG5149	TF binding site BDTNP1_TFBS_twi
3R	16891881	3R_16891881_SNP [dm3] 3R_21066159_SNP [dm6]	A	C	1.155e^-4	0.836	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3L	17982951	3L_17982951_SNP [dm3] 3L_17989851_SNP [dm6]	T	G	1.164e^-4	0.836	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22896425	3R_22896425_SNP [dm3] 3R_27070703_SNP [dm6]	G	A	1.165e^-4	0.836	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16683522	3L_16683522_SNP [dm3] 3L_16690422_SNP [dm6]	G	T	1.167e^-4	0.836	DOWNSTREAM CR45179 INTRON Lasp & 2 others
3L	15476636	3L_15476636_SNP [dm3] 3L_15483536_SNP [dm6]	C	T	1.170e^-4	0.836	DOWNSTREAM Ran-like INTERGENIC
2L	2999641	2L_2999641_SNP [dm3] 2L_2999641_SNP [dm6]	T	C	1.180e^-4	0.836	UTR_5_PRIME CG17265 DOWNSTREAM CG3558	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3L	18159680	3L_18159680_SNP [dm3] 3L_18166580_SNP [dm6]	A	G	1.181e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15251644	2R_15251644_SNP [dm3] 2R_19364139_SNP [dm6]	A	T	1.190e^-4	0.836	INTRON CG10051	TF binding site mE1_TFBS_cad
X	17061850	X_17061850_SNP [dm3] X_17167817_SNP [dm6]	A	C	1.190e^-4	0.836	INTRON baz
3R	17626836	3R_17626836_SNP [dm3] 3R_21801114_SNP [dm6]	C	T	1.205e^-4	0.836	INTRON CASK
X	9744342	X_9744342_SNP [dm3] X_9850309_SNP [dm6]	A	C	1.205e^-4	0.836	UTR_3_PRIME CG32698
3R	16420415	3R_16420415_SNP [dm3] 3R_20594693_SNP [dm6]	A	C	1.209e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	10346434	3R_10346434_SNP [dm3] 3R_14520712_SNP [dm6]	A	G	1.213e^-4	0.836	UPSTREAM Cyp313a1 INTRON Pde6
3L	7101374	3L_7101374_DEL [dm3] 3L_7108274_DEL [dm6]	GCTG	G	1.214e^-4	0.836	INTRON form3	TF binding site mE1_TFBS_inv
2L	9531813	2L_9531813_SNP [dm3] 2L_9531813_SNP [dm6]	C	T	1.229e^-4	0.836	INTRON Oatp30B
3L	14432719	3L_14432719_SNP [dm3] 3L_14439619_SNP [dm6]	T	C	1.242e^-4	0.836	INTRON bbg
3R	20830502	3R_20830502_SNP [dm3] 3R_25004780_SNP [dm6]	A	C	1.244e^-4	0.836	INTRON tnc	TF binding site mE1_TFBS_chinmo
3R	3669681	3R_3669681_SNP [dm3] 3R_7843959_SNP [dm6]	T	C	1.249e^-4	0.836	SYNONYMOUS_CODING CG34384
3L	12417577	3L_12417577_SNP [dm3] 3L_12424477_SNP [dm6]	T	A	1.256e^-4	0.836	INTRON toe	TF binding site mE1_TFBS_cad
2R	17161374	2R_17161374_SNP [dm3] 2R_21273869_SNP [dm6]	A	C	1.266e^-4	0.836	INTRON Rgk3
2R	7635267	2R_7635267_SNP [dm3] 2R_11747762_SNP [dm6]	C	T	1.266e^-4	0.836	INTERGENIC
X	21874463	X_21874463_SNP [dm3] X_22472627_SNP [dm6]	G	A	1.273e^-4	0.836	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13029990	2L_13029990_SNP [dm3] 2L_13029990_SNP [dm6]	C	T	1.275e^-4	0.836	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13343362	2R_13343362_SNP [dm3] 2R_17455857_SNP [dm6]	T	G	1.280e^-4	0.836	NON_SYNONYMOUS_CODING robls54B UPSTREAM robl DOWNSTREAM CG10764	TF binding site BDTNP1_TFBS_dl
3R	17396264	3R_17396264_SNP [dm3] 3R_21570542_SNP [dm6]	C	T	1.284e^-4	0.836	UTR_3_PRIME InR
3R	16908055	3R_16908055_SNP [dm3] 3R_21082333_SNP [dm6]	G	C	1.288e^-4	0.836	DOWNSTREAM RhoGAP93B INTERGENIC
3R	26610457	3R_26610457_SNP [dm3] 3R_30784735_SNP [dm6]	C	T	1.292e^-4	0.836	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6018303	2L_6018303_SNP [dm3] 2L_6018303_SNP [dm6]	G	A	1.295e^-4	0.836	INTRON H2.0
2L	5444824	2L_5444824_SNP [dm3] 2L_5444824_SNP [dm6]	A	G	1.299e^-4	0.836	INTERGENIC
X	12442897	X_12442897_SNP [dm3] X_12548864_SNP [dm6]	G	A	1.320e^-4	0.836	INTRON CG43921
2L	2287968	2L_2287968_SNP [dm3] 2L_2287968_SNP [dm6]	C	T	1.320e^-4	0.836	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3L	17977210	3L_17977210_SNP [dm3] 3L_17984110_SNP [dm6]	C	G	1.325e^-4	0.836	INTRON Eip75B
3R	3278291	3R_3278291_SNP [dm3] 3R_7452569_SNP [dm6]	T	C	1.327e^-4	0.836	DOWNSTREAM tRNA:V3b:84Da INTERGENIC
3L	600241	3L_600241_SNP [dm3] 3L_600241_SNP [dm6]	T	C	1.331e^-4	0.836	SYNONYMOUS_CODING CG13893	TF binding site mE1_TFBS_inv
2L	15198771	2L_15198771_SNP [dm3] 2L_15198771_SNP [dm6]	C	A	1.335e^-4	0.836	INTRON CG4168
X	7005952	X_7005952_SNP [dm3] X_7111919_SNP [dm6]	A	T	1.347e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22897262	3R_22897262_SNP [dm3] 3R_27071540_SNP [dm6]	C	T	1.358e^-4	0.836	INTERGENIC
3R	19562261	3R_19562261_SNP [dm3] 3R_23736539_SNP [dm6]	T	C	1.361e^-4	0.836	INTRON Hmgcr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
X	12876436	X_12876436_SNP [dm3] X_12982403_SNP [dm6]	C	T	1.361e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21953730	3R_21953730_SNP [dm3] 3R_26128008_SNP [dm6]	C	T	1.362e^-4	0.836	UPSTREAM CG31324 DOWNSTREAM CG14556 INTRON CG31324
2L	5444812	2L_5444812_SNP [dm3] 2L_5444812_SNP [dm6]	T	C	1.367e^-4	0.836	INTERGENIC
3R	26923622	3R_26923622_SNP [dm3] 3R_31097900_SNP [dm6]	C	T	1.368e^-4	0.836	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
3R	25963758	3R_25963758_SNP [dm3] 3R_30138036_SNP [dm6]	A	G	1.373e^-4	0.836	INTRON AdoR	TF binding site mE1_TFBS_cad
3R	3859701	3R_3859701_SNP [dm3] 3R_8033979_SNP [dm6]	G	A	1.377e^-4	0.836	SYNONYMOUS_CODING unc-45 UPSTREAM CG11035	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12949139	X_12949139_SNP [dm3] X_13055106_SNP [dm6]	T	A	1.382e^-4	0.836	DOWNSTREAM CR44840 INTRON rad & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5110345	2L_5110345_SNP [dm3] 2L_5110345_SNP [dm6]	C	T	1.384e^-4	0.836	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10608495	3R_10608495_SNP [dm3] 3R_14782773_SNP [dm6]	G	A	1.386e^-4	0.836	INTRON jvl
3L	10807710	3L_10807710_SNP [dm3] 3L_10814610_SNP [dm6]	T	C	1.395e^-4	0.836	UPSTREAM CG42831 INTERGENIC
2R	17339759	2R_17339759_SNP [dm3] 2R_21452254_SNP [dm6]	A	G	1.397e^-4	0.836	INTRON Sdc
3L	3340382	3L_3340382_SNP [dm3] 3L_3340382_SNP [dm6]	T	C	1.408e^-4	0.836	INTRON kst
2R	13624942	2R_13624942_SNP [dm3] 2R_17737437_SNP [dm6]	T	C	1.410e^-4	0.836	UPSTREAM CG6406 DOWNSTREAM CG6401 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9491899	3L_9491899_SNP [dm3] 3L_9498799_SNP [dm6]	T	C	1.424e^-4	0.836	INTRON path
3R	23036817	3R_23036817_SNP [dm3] 3R_27211095_SNP [dm6]	T	C	1.428e^-4	0.836	INTERGENIC
3L	14368953	3L_14368953_SNP [dm3] 3L_14375853_SNP [dm6]	T	G	1.428e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18183640	3R_18183640_SNP [dm3] 3R_22357918_SNP [dm6]	A	T	1.438e^-4	0.836	INTRON Sar1	TF binding site mE1_TFBS_sens
2R	11047799	2R_11047799_SNP [dm3] 2R_15160294_SNP [dm6]	A	G	1.442e^-4	0.836	UPSTREAM CR43831 INTRON igl
X	13766645	X_13766645_SNP [dm3] X_13872612_SNP [dm6]	A	G	1.448e^-4	0.836	INTRON mamo
3L	10218440	3L_10218440_SNP [dm3] 3L_10225340_SNP [dm6]	A	G	1.454e^-4	0.836	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6292866	2L_6292866_SNP [dm3] 2L_6292866_SNP [dm6]	C	G	1.456e^-4	0.836	INTRON Ddr
X	18845688	X_18845688_SNP [dm3] X_18951655_SNP [dm6]	A	T	1.461e^-4	0.836	INTRON CG43759
3R	9205552	3R_9205552_SNP [dm3] 3R_13379830_SNP [dm6]	C	G	1.464e^-4	0.836	UPSTREAM CG8870 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16420588	3R_16420588_SNP [dm3] 3R_20594866_SNP [dm6]	A	T	1.477e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	13528368	2R_13528368_SNP [dm3] 2R_17640863_SNP [dm6]	A	G	1.479e^-4	0.836	INTERGENIC
3R	19906127	3R_19906127_SNP [dm3] 3R_24080405_SNP [dm6]	C	T	1.482e^-4	0.836	INTRON 4EHP
X	17021372	X_17021372_SNP [dm3] X_17127339_SNP [dm6]	C	T	1.484e^-4	0.836	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
2R	7045583	2R_7045583_SNP [dm3] 2R_11158078_SNP [dm6]	T	A	1.487e^-4	0.836	INTRON CG13229
3L	5625070	3L_5625070_SNP [dm3] 3L_5631970_SNP [dm6]	T	A	1.491e^-4	0.836	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
3L	17596701	3L_17596701_SNP [dm3] 3L_17603601_SNP [dm6]	A	C	1.492e^-4	0.836	INTRON Eip74EF
3R	19010090	3R_19010090_SNP [dm3] 3R_23184368_SNP [dm6]	C	T	1.495e^-4	0.836	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14771840	2L_14771840_SNP [dm3] 2L_14771840_SNP [dm6]	G	A	1.498e^-4	0.836	INTERGENIC
2R	10431069	2R_10431069_SNP [dm3] 2R_14543564_SNP [dm6]	G	C	1.518e^-4	0.836	DOWNSTREAM CG30076 INTRON ttv
X	5020892	X_5020892_SNP [dm3] X_5126859_SNP [dm6]	T	C	1.527e^-4	0.836	INTRON rg & 1 other
2L	4227180	2L_4227180_DEL [dm3] 2L_4227180_DEL [dm6]	ACTT	A	1.531e^-4	0.836	UPSTREAM RpL40 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	17515033	3R_17515033_SNP [dm3] 3R_21689311_SNP [dm6]	T	A	1.532e^-4	0.836	INTRON CG31176
2L	4219655	2L_4219655_SNP [dm3] 2L_4219655_SNP [dm6]	C	A	1.535e^-4	0.836	INTRON ft	TF binding site mE1_TFBS_HSA
2R	3926132	2R_3926132_SNP [dm3] 2R_8038627_SNP [dm6]	C	A	1.550e^-4	0.836	INTRON Optix	regulatory region REDfly_CRMs
3L	4156016	3L_4156016_SNP [dm3] 3L_4156016_SNP [dm6]	A	G	1.552e^-4	0.836	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	3449529	X_3449529_SNP [dm3] X_3555496_SNP [dm6]	A	C	1.554e^-4	0.836	INTRON CG32791
2L	7456589	2L_7456589_MNP [dm3] 2L_7456589_MNP [dm6]	AAG	GTA	1.555e^-4	0.836	UPSTREAM Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7730477	3R_7730477_SNP [dm3] 3R_11904755_SNP [dm6]	C	T	1.563e^-4	0.836	INTRON Cad87A
3L	16771114	3L_16771114_SNP [dm3] 3L_16778014_SNP [dm6]	C	G	1.567e^-4	0.836	SYNONYMOUS_CODING CG13025 DOWNSTREAM Nrt	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7456585	2L_7456585_SNP [dm3] 2L_7456585_SNP [dm6]	T	C	1.580e^-4	0.836	UPSTREAM Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20315033	2L_20315033_SNP [dm3] 2L_20315033_SNP [dm6]	T	G	1.585e^-4	0.836	DOWNSTREAM CR43606 INTRON spir	TF binding site mE1_TFBS_cad
3R	13199885	3R_13199885_SNP [dm3] 3R_17374163_SNP [dm6]	G	T	1.598e^-4	0.836	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23426637	3R_23426637_SNP [dm3] 3R_27600915_SNP [dm6]	G	A	1.598e^-4	0.836	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5509397	2L_5509397_SNP [dm3] 2L_5509397_SNP [dm6]	A	T	1.601e^-4	0.836	INTERGENIC
3R	5473215	3R_5473215_SNP [dm3] 3R_9647493_SNP [dm6]	T	C	1.602e^-4	0.836	INTRON Dh44
2L	7336665	2L_7336665_DEL [dm3] 2L_7336665_DEL [dm6]	TGCTTCAT	T	1.605e^-4	0.836	INTRON Wnt6
3R	16421766	3R_16421766_SNP [dm3] 3R_20596044_SNP [dm6]	C	G	1.609e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_dl
3R	23206746	3R_23206746_SNP [dm3] 3R_27381024_SNP [dm6]	A	T	1.610e^-4	0.836	NON_SYNONYMOUS_CODING side UTR_3_PRIME side INTRON side
2R	15251222	2R_15251222_SNP [dm3] 2R_19363717_SNP [dm6]	T	C	1.613e^-4	0.836	UTR_5_PRIME CG10051 DOWNSTREAM CG11961	TF binding site mE1_TFBS_cad
3L	21803335	3L_21803335_SNP [dm3] 3L_21810235_SNP [dm6]	C	A	1.615e^-4	0.836	INTRON eg	TF binding site mE1_TFBS_sens
3L	5982682	3L_5982682_SNP [dm3] 3L_5989582_SNP [dm6]	T	C	1.616e^-4	0.836	INTERGENIC
X	5328716	X_5328716_SNP [dm3] X_5434683_SNP [dm6]	A	G	1.621e^-4	0.836	INTRON CR44471
3L	17982949	3L_17982949_SNP [dm3] 3L_17989849_SNP [dm6]	G	T	1.621e^-4	0.836	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18586367	2L_18586367_SNP [dm3] 2L_18586367_SNP [dm6]	G	A	1.622e^-4	0.836	INTRON Pde11
3R	14611595	3R_14611595_SNP [dm3] 3R_18785873_SNP [dm6]	C	G	1.628e^-4	0.836	INTRON CG7720
3R	19950230	3R_19950230_DEL [dm3] 3R_24124508_DEL [dm6]	CATAC	C	1.635e^-4	0.836	INTRON Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6440362	2R_6440362_SNP [dm3] 2R_10552857_SNP [dm6]	T	A	1.637e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18580814	2L_18580814_SNP [dm3] 2L_18580814_SNP [dm6]	T	A	1.638e^-4	0.836	INTRON Pde11
2R	6440361	2R_6440361_SNP [dm3] 2R_10552856_SNP [dm6]	G	A	1.644e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	14077955	X_14077955_SNP [dm3] X_14183922_SNP [dm6]	G	T	1.646e^-4	0.836	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
3L	10641042	3L_10641042_SNP [dm3] 3L_10647942_SNP [dm6]	C	T	1.646e^-4	0.836	INTRON CG32066
3R	21652745	3R_21652745_SNP [dm3] 3R_25827023_SNP [dm6]	A	C	1.652e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7076791	3L_7076791_SNP [dm3] 3L_7083691_SNP [dm6]	T	C	1.658e^-4	0.836	INTERGENIC
3L	10212962	3L_10212962_SNP [dm3] 3L_10219862_SNP [dm6]	C	T	1.659e^-4	0.836	SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
2L	13431370	2L_13431370_SNP [dm3] 2L_13431370_SNP [dm6]	C	A	1.670e^-4	0.836	INTRON CG42784
3R	26920919	3R_26920919_SNP [dm3] 3R_31095197_SNP [dm6]	G	A	1.673e^-4	0.836	INTRON CG11317
3R	3842228	3R_3842228_SNP [dm3] 3R_8016506_SNP [dm6]	C	A	1.683e^-4	0.836	UTR_3_PRIME Pbp95 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3899872	3R_3899872_SNP [dm3] 3R_8074150_SNP [dm6]	G	A	1.683e^-4	0.836	INTRON mAChR-B
2L	737493	2L_737493_SNP [dm3] 2L_737493_SNP [dm6]	A	G	1.684e^-4	0.836	UTR_3_PRIME Eaat2
3L	2974302	3L_2974302_SNP [dm3] 3L_2974302_SNP [dm6]	C	T	1.689e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11063427	2R_11063427_SNP [dm3] 2R_15175922_SNP [dm6]	G	T	1.690e^-4	0.836	INTRON igl
2L	2287909	2L_2287909_SNP [dm3] 2L_2287909_SNP [dm6]	G	A	1.703e^-4	0.836	SYNONYMOUS_CODING CG42658 DOWNSTREAM CG17237
2R	10961689	2R_10961689_SNP [dm3] 2R_15074184_SNP [dm6]	A	G	1.703e^-4	0.836	INTERGENIC
3R	24010105	3R_24010105_SNP [dm3] 3R_28184383_SNP [dm6]	G	A	1.706e^-4	0.836	INTRON CG34354
3R	13199863	3R_13199863_SNP [dm3] 3R_17374141_SNP [dm6]	T	G	1.709e^-4	0.836	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13199866	3R_13199866_DEL [dm3] 3R_17374144_DEL [dm6]	AT	A	1.709e^-4	0.836	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17333116	2R_17333116_SNP [dm3] 2R_21445611_SNP [dm6]	T	A	1.719e^-4	0.836	INTRON Sdc
2L	738059	2L_738059_SNP [dm3] 2L_738059_SNP [dm6]	G	T	1.724e^-4	0.836	UTR_3_PRIME Eaat2
2R	17297686	2R_17297686_SNP [dm3] 2R_21410181_SNP [dm6]	C	A	1.728e^-4	0.836	INTRON Sdc
2R	3927983	2R_3927983_SNP [dm3] 2R_8040478_SNP [dm6]	G	A	1.731e^-4	0.836	UPSTREAM Optix INTRON Optix	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10994633	3R_10994633_SNP [dm3] 3R_15168911_SNP [dm6]	C	A	1.736e^-4	0.836	INTRON Gyc88E
3R	21974530	3R_21974530_SNP [dm3] 3R_26148808_SNP [dm6]	T	C	1.738e^-4	0.836	INTERGENIC
2R	20138434	2R_20138434_SNP [dm3] 2R_24250911_SNP [dm6]	G	C	1.740e^-4	0.836	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
2R	20138542	2R_20138542_SNP [dm3] 2R_24251019_SNP [dm6]	T	C	1.740e^-4	0.836	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
X	21922406	X_21922406_SNP [dm3] X_22520570_SNP [dm6]	G	T	1.741e^-4	0.836	INTRON CG17600
2R	16454105	2R_16454105_SNP [dm3] 2R_20566600_SNP [dm6]	C	G	1.743e^-4	0.836	INTRON qsm
2R	3927176	2R_3927176_SNP [dm3] 2R_8039671_SNP [dm6]	C	T	1.748e^-4	0.836	INTRON Optix
2L	14409275	2L_14409275_SNP [dm3] 2L_14409275_SNP [dm6]	C	A	1.750e^-4	0.836	UTR_5_PRIME elB UPSTREAM CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16937743	2R_16937743_SNP [dm3] 2R_21050238_SNP [dm6]	C	A	1.760e^-4	0.836	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
X	10263746	X_10263746_SNP [dm3] X_10369713_SNP [dm6]	A	G	1.772e^-4	0.836	INTRON CG17841
2L	6282719	2L_6282719_SNP [dm3] 2L_6282719_SNP [dm6]	G	T	1.775e^-4	0.836	INTRON Ddr	TF binding site mE1_TFBS_chinmo
X	4710216	X_4710216_SNP [dm3] X_4816183_SNP [dm6]	C	G	1.775e^-4	0.836	INTERGENIC
3L	11407105	3L_11407105_SNP [dm3] 3L_11414005_SNP [dm6]	T	G	1.782e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	23036840	3R_23036840_SNP [dm3] 3R_27211118_SNP [dm6]	C	G	1.789e^-4	0.836	INTERGENIC
3R	3881024	3R_3881024_SNP [dm3] 3R_8055302_SNP [dm6]	A	T	1.794e^-4	0.836	UTR_3_PRIME CG43060
X	12874799	X_12874799_SNP [dm3] X_12980766_SNP [dm6]	G	A	1.796e^-4	0.836	INTERGENIC
3L	11407082	3L_11407082_SNP [dm3] 3L_11413982_SNP [dm6]	T	A	1.802e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	2974309	3L_2974309_SNP [dm3] 3L_2974309_SNP [dm6]	G	A	1.805e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
X	7005955	X_7005955_SNP [dm3] X_7111922_SNP [dm6]	C	T	1.807e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3952231	3R_3952231_SNP [dm3] 3R_8126509_SNP [dm6]	A	G	1.812e^-4	0.836	UPSTREAM Gie & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7199087	2L_7199087_SNP [dm3] 2L_7199087_SNP [dm6]	C	T	1.816e^-4	0.836	INTRON CG4502
3L	1519394	3L_1519394_SNP [dm3] 3L_1519394_SNP [dm6]	C	A	1.818e^-4	0.836	INTRON Psa
2L	10868837	2L_10868837_SNP [dm3] 2L_10868837_SNP [dm6]	C	T	1.818e^-4	0.836	INTERGENIC
2R	8686710	2R_8686710_SNP [dm3] 2R_12799205_SNP [dm6]	A	T	1.826e^-4	0.836	INTRON sca EXON CR45137	TF binding site mE1_TFBS_cad
2L	5905713	2L_5905713_SNP [dm3] 2L_5905713_SNP [dm6]	A	G	1.828e^-4	0.836	EXON CR43808
2R	3245956	2R_3245956_SNP [dm3] 2R_7358451_SNP [dm6]	T	G	1.835e^-4	0.836	NON_SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2R	11218013	2R_11218013_SNP [dm3] 2R_15330508_SNP [dm6]	C	A	1.842e^-4	0.836	UPSTREAM Hr51 EXON CR44371	TF binding site BDTNP1_TFBS_dl
3L	9243024	3L_9243024_INS [dm3] 3L_9249924_INS [dm6]	G	GG	1.844e^-4	0.836	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5444877	2L_5444877_SNP [dm3] 2L_5444877_SNP [dm6]	A	C	1.848e^-4	0.836	INTERGENIC
X	12874651	X_12874651_SNP [dm3] X_12980618_SNP [dm6]	T	G	1.848e^-4	0.836	INTERGENIC
3L	9482642	3L_9482642_SNP [dm3] 3L_9489542_SNP [dm6]	T	G	1.857e^-4	0.836	UTR_3_PRIME CG32037 UPSTREAM CG32036 DOWNSTREAM CG32037
3L	14432700	3L_14432700_SNP [dm3] 3L_14439600_SNP [dm6]	T	G	1.859e^-4	0.836	INTRON bbg
2R	1397132	2R_1397132_SNP [dm3] 2R_5509627_SNP [dm6]	G	A	1.879e^-4	0.836	INTRON CG30438	transposable element FlyBase
X	17663745	X_17663745_SNP [dm3] X_17769712_SNP [dm6]	G	T	1.881e^-4	0.836	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2R	11982652	2R_11982652_SNP [dm3] 2R_16095147_SNP [dm6]	C	T	1.884e^-4	0.836	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18009028	2R_18009028_DEL [dm3] 2R_22121523_DEL [dm6]	TAAAT	C	1.900e^-4	0.836	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18372718	2R_18372718_SNP [dm3] 2R_22485213_SNP [dm6]	A	G	1.902e^-4	0.836	NON_SYNONYMOUS_CODING CG4554
3L	18129568	3L_18129568_SNP [dm3] 3L_18136468_SNP [dm6]	A	G	1.905e^-4	0.836	UPSTREAM CR44669 INTERGENIC
2R	10214793	2R_10214793_SNP [dm3] 2R_14327288_SNP [dm6]	T	C	1.920e^-4	0.836	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25963729	3R_25963729_SNP [dm3] 3R_30138007_SNP [dm6]	C	A	1.922e^-4	0.836	INTRON AdoR	TF binding site mE1_TFBS_cad
2R	12113255	2R_12113255_SNP [dm3] 2R_16225750_SNP [dm6]	A	G	1.922e^-4	0.836	UPSTREAM CG15706 & 1 other INTRON CG15706
3R	26610383	3R_26610383_SNP [dm3] 3R_30784661_SNP [dm6]	T	G	1.928e^-4	0.836	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9374227	2L_9374227_SNP [dm3] 2L_9374227_SNP [dm6]	C	T	1.929e^-4	0.836	DOWNSTREAM CR43865 INTRON Shawl
3L	10218457	3L_10218457_SNP [dm3] 3L_10225357_SNP [dm6]	A	T	1.933e^-4	0.836	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13697574	3R_13697574_SNP [dm3] 3R_17871852_SNP [dm6]	T	A	1.938e^-4	0.836	UTR_3_PRIME tinc DOWNSTREAM Rim	TF binding site mE1_TFBS_inv
3L	14900244	3L_14900244_SNP [dm3] 3L_14907144_SNP [dm6]	G	A	1.942e^-4	0.836	INTRON DCX-EMAP
3R	26924577	3R_26924577_SNP [dm3] 3R_31098855_SNP [dm6]	T	A	1.943e^-4	0.836	DOWNSTREAM CG15553 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22766223	3R_22766223_SNP [dm3] 3R_26940501_SNP [dm6]	G	A	1.949e^-4	0.836	INTRON sda
2L	3246207	2L_3246207_SNP [dm3] 2L_3246207_SNP [dm6]	A	T	1.950e^-4	0.836	INTERGENIC
2R	17340235	2R_17340235_SNP [dm3] 2R_21452730_SNP [dm6]	A	G	1.951e^-4	0.836	INTRON Sdc
2R	17298315	2R_17298315_SNP [dm3] 2R_21410810_SNP [dm6]	G	A	1.953e^-4	0.836	INTRON Sdc
X	16892164	X_16892164_SNP [dm3] X_16998131_SNP [dm6]	G	T	1.954e^-4	0.836	INTRON CG45002
3R	10608200	3R_10608200_SNP [dm3] 3R_14782478_SNP [dm6]	A	G	1.959e^-4	0.836	INTRON jvl
2R	15251111	2R_15251111_SNP [dm3] 2R_19363606_SNP [dm6]	G	C	1.959e^-4	0.836	UPSTREAM CG10051 DOWNSTREAM CG11961 INTERGENIC	TF binding site mE1_TFBS_cad
2R	3912549	2R_3912549_SNP [dm3] 2R_8025044_SNP [dm6]	T	G	1.960e^-4	0.836	EXON CR45267	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	26924854	3R_26924854_SNP [dm3] 3R_31099132_SNP [dm6]	G	A	1.961e^-4	0.836	SYNONYMOUS_CODING CG15553	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10811328	2R_10811328_SNP [dm3] 2R_14923823_SNP [dm6]	A	T	1.965e^-4	0.836	INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26924847	3R_26924847_SNP [dm3] 3R_31099125_SNP [dm6]	G	C	1.965e^-4	0.836	NON_SYNONYMOUS_CODING CG15553	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13199876	3R_13199876_SNP [dm3] 3R_17374154_SNP [dm6]	A	T	1.971e^-4	0.836	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21761248	3R_21761248_SNP [dm3] 3R_25935526_SNP [dm6]	G	T	1.980e^-4	0.836	INTRON CCAP-R
X	9689591	X_9689591_SNP [dm3] X_9795558_SNP [dm6]	T	G	1.982e^-4	0.836	INTRON CG32698
2R	6861842	2R_6861842_DEL [dm3] 2R_10974337_DEL [dm6]	TT	T	1.985e^-4	0.836	INTERGENIC
3L	19531646	3L_19531646_SNP [dm3] 3L_19538546_SNP [dm6]	T	C	1.989e^-4	0.836	UTR_3_PRIME CG9279 DOWNSTREAM Cpr76Bd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9393780	3R_9393780_SNP [dm3] 3R_13568058_SNP [dm6]	A	T	1.992e^-4	0.836	INTERGENIC
2R	20223173	2R_20223173_SNP [dm3] 2R_24335650_SNP [dm6]	C	A	2.001e^-4	0.836	EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	2.004e^-4	0.836	INTRON pHCl
3R	19836787	3R_19836787_SNP [dm3] 3R_24011065_SNP [dm6]	C	T	2.006e^-4	0.836	INTRON KrT95D
2R	14477980	2R_14477980_SNP [dm3] 2R_18590475_SNP [dm6]	C	A	2.008e^-4	0.836	INTRON GEFmeso
2R	13152001	2R_13152001_SNP [dm3] 2R_17264496_SNP [dm6]	G	T	2.013e^-4	0.836	INTRON mbl	TF binding site BDTNP1_TFBS_z
3R	22380038	3R_22380038_DEL [dm3] 3R_26554316_DEL [dm6]	AAACAA	A	2.022e^-4	0.836	INTRON scrib
3L	6075740	3L_6075740_SNP [dm3] 3L_6082640_SNP [dm6]	A	G	2.026e^-4	0.836	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20727638	2R_20727638_SNP [dm3] 2R_24840115_SNP [dm6]	C	T	2.028e^-4	0.836	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11955122	3L_11955122_SNP [dm3] 3L_11962022_SNP [dm6]	A	G	2.044e^-4	0.836	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3L	18641616	3L_18641616_SNP [dm3] 3L_18648516_SNP [dm6]	C	G	2.047e^-4	0.836	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26926536	3R_26926536_SNP [dm3] 3R_31100814_SNP [dm6]	G	C	2.051e^-4	0.836	SYNONYMOUS_CODING CG15553
2L	1124493	2L_1124493_SNP [dm3] 2L_1124493_SNP [dm6]	G	A	2.086e^-4	0.836	INTRON Pino	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16454519	2R_16454519_SNP [dm3] 2R_20567014_SNP [dm6]	T	G	2.098e^-4	0.836	INTRON qsm
2L	8934045	2L_8934045_INS [dm3] 2L_8934045_INS [dm6]	A	AA	2.111e^-4	0.836	UTR_5_PRIME Tsp29Fa UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTRON Tsp29Fa
3L	18236486	3L_18236486_SNP [dm3] 3L_18243386_SNP [dm6]	A	G	2.118e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6290751	2R_6290751_SNP [dm3] 2R_10403246_SNP [dm6]	T	C	2.120e^-4	0.836	INTRON CG42732
2R	6861858	2R_6861858_SNP [dm3] 2R_10974353_SNP [dm6]	A	G	2.121e^-4	0.836	INTERGENIC
3L	5161079	3L_5161079_SNP [dm3] 3L_5167979_SNP [dm6]	C	T	2.122e^-4	0.836	INTRON shep
3L	10218476	3L_10218476_SNP [dm3] 3L_10225376_SNP [dm6]	G	T	2.124e^-4	0.836	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6350934	3L_6350934_SNP [dm3] 3L_6357834_SNP [dm6]	G	A	2.125e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22198104	2L_22198104_SNP [dm3] 2L_22198104_SNP [dm6]	G	A	2.127e^-4	0.836	UTR_5_PRIME Ir40a INTRON Ir40a
3L	18140480	3L_18140480_INS [dm3] 3L_18147380_INS [dm6]	C	CATC	2.127e^-4	0.836	INTERGENIC
2R	3928457	2R_3928457_SNP [dm3] 2R_8040952_SNP [dm6]	C	G	2.131e^-4	0.836	UPSTREAM Optix INTRON Optix
X	1816617	X_1816617_SNP [dm3] X_1922584_SNP [dm6]	C	T	2.138e^-4	0.836	SYNONYMOUS_CODING eIF2B-epsilon UPSTREAM Ocrl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11886634	3R_11886634_SNP [dm3] 3R_16060912_SNP [dm6]	A	G	2.144e^-4	0.836	SYNONYMOUS_CODING CG10185 DOWNSTREAM msps	TF binding site BDTNP1_TFBS_da
X	12876135	X_12876135_SNP [dm3] X_12982102_SNP [dm6]	G	A	2.154e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11047790	2R_11047790_SNP [dm3] 2R_15160285_SNP [dm6]	T	G	2.158e^-4	0.836	UPSTREAM CR43831 INTRON igl
2R	12113265	2R_12113265_SNP [dm3] 2R_16225760_SNP [dm6]	T	A	2.164e^-4	0.836	UPSTREAM CG15706 & 1 other INTRON CG15706
3R	16420763	3R_16420763_SNP [dm3] 3R_20595041_SNP [dm6]	A	G	2.167e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22895342	3R_22895342_SNP [dm3] 3R_27069620_SNP [dm6]	C	T	2.168e^-4	0.836	UTR_5_PRIME spz	TF binding site BDTNP1_TFBS_dl
3L	1199711	3L_1199711_SNP [dm3] 3L_1199711_SNP [dm6]	A	T	2.176e^-4	0.836	DOWNSTREAM Aplip1 INTERGENIC
2L	7271536	2L_7271536_SNP [dm3] 2L_7271536_SNP [dm6]	G	A	2.188e^-4	0.836	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	16523892	3L_16523892_SNP [dm3] 3L_16530792_SNP [dm6]	A	G	2.188e^-4	0.836	INTRON CG43373
X	20875935	X_20875935_SNP [dm3] X_21004908_SNP [dm6]	T	C	2.189e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	4586070	2L_4586070_SNP [dm3] 2L_4586070_SNP [dm6]	C	T	2.204e^-4	0.836	INTRON dp
3L	14432778	3L_14432778_SNP [dm3] 3L_14439678_SNP [dm6]	C	G	2.210e^-4	0.836	INTRON bbg
2R	6745448	2R_6745448_SNP [dm3] 2R_10857943_SNP [dm6]	A	G	2.215e^-4	0.836	INTRON CG30015
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	2.219e^-4	0.836	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
3R	24083637	3R_24083637_SNP [dm3] 3R_28257915_SNP [dm6]	T	A	2.232e^-4	0.836	INTERGENIC
X	10137255	X_10137255_SNP [dm3] X_10243222_SNP [dm6]	A	G	2.243e^-4	0.836	INTRON Hk
2R	15251173	2R_15251173_SNP [dm3] 2R_19363668_SNP [dm6]	C	T	2.244e^-4	0.836	UTR_5_PRIME CG10051 DOWNSTREAM CG11961	TF binding site mE1_TFBS_cad
3R	26921518	3R_26921518_INS [dm3] 3R_31095796_INS [dm6]	T	GTA	2.244e^-4	0.836	INTRON CG11317
2L	13030083	2L_13030083_SNP [dm3] 2L_13030083_SNP [dm6]	T	C	2.245e^-4	0.836	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12384712	2R_12384712_SNP [dm3] 2R_16497207_SNP [dm6]	G	A	2.245e^-4	0.836	SYNONYMOUS_CODING CG7813
2R	12691939	2R_12691939_DEL [dm3] 2R_16804434_DEL [dm6]	TAACTCC	T	2.247e^-4	0.836	INTERGENIC
3L	4368992	3L_4368992_DEL [dm3] 3L_4368992_DEL [dm6]	AGA	A	2.256e^-4	0.836	UTR_3_PRIME DopEcR DOWNSTREAM DopEcR
3L	11929159	3L_11929159_SNP [dm3] 3L_11936059_SNP [dm6]	C	T	2.260e^-4	0.836	DOWNSTREAM byn INTRON CG44837
2L	737490	2L_737490_SNP [dm3] 2L_737490_SNP [dm6]	T	C	2.269e^-4	0.836	UTR_3_PRIME Eaat2
X	12628301	X_12628301_DEL [dm3] X_12734268_DEL [dm6]	AGCAA	A	2.270e^-4	0.836	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	1397074	2R_1397074_DEL [dm3] 2R_5509569_DEL [dm6]	ACCCCGTTTCGGGGTTTGTA...	A	2.295e^-4	0.836	INTRON CG30438	transposable element FlyBase
3R	9224132	3R_9224132_SNP [dm3] 3R_13398410_SNP [dm6]	T	C	2.296e^-4	0.836	UTR_3_PRIME CG14377 DOWNSTREAM CG9796 & 1 other
3R	16421720	3R_16421720_SNP [dm3] 3R_20595998_SNP [dm6]	G	A	2.301e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	13966795	3L_13966795_SNP [dm3] 3L_13973695_SNP [dm6]	G	A	2.308e^-4	0.836	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10820426	2L_10820426_SNP [dm3] 2L_10820426_SNP [dm6]	C	T	2.311e^-4	0.836	UTR_3_PRIME CG6508 UPSTREAM CG17134 INTRON Nos
3R	11419873	3R_11419873_SNP [dm3] 3R_15594151_SNP [dm6]	G	A	2.312e^-4	0.836	INTERGENIC
3L	13966310	3L_13966310_DEL [dm3] 3L_13973210_DEL [dm6]	GACG	G	2.313e^-4	0.836	CODON_DELETION CG13738 UPSTREAM Hsc70-1 DOWNSTREAM Nxf3 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	6618258	2L_6618258_SNP [dm3] 2L_6618258_SNP [dm6]	C	T	2.316e^-4	0.836	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
2L	14771830	2L_14771830_INS [dm3] 2L_14771830_INS [dm6]	T	TA	2.321e^-4	0.836	INTERGENIC
3R	16420824	3R_16420824_SNP [dm3] 3R_20595102_SNP [dm6]	G	A	2.321e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8933816	2L_8933816_SNP [dm3] 2L_8933816_SNP [dm6]	T	G	2.324e^-4	0.836	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
2L	2999361	2L_2999361_SNP [dm3] 2L_2999361_SNP [dm6]	G	T	2.328e^-4	0.836	UTR_5_PRIME CG17265 DOWNSTREAM CG3558	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens
2R	6440365	2R_6440365_SNP [dm3] 2R_10552860_SNP [dm6]	A	G	2.328e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	17622165	X_17622165_SNP [dm3] X_17728132_SNP [dm6]	G	A	2.329e^-4	0.836	INTRON CG42684
X	3843128	X_3843128_SNP [dm3] X_3949095_SNP [dm6]	G	C	2.339e^-4	0.836	UTR_5_PRIME Vap-33A UPSTREAM Vap-33A DOWNSTREAM CG32783	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	26925737	3R_26925737_SNP [dm3] 3R_31100015_SNP [dm6]	C	A	2.341e^-4	0.836	NON_SYNONYMOUS_CODING CG15553
2R	18009026	2R_18009026_SNP [dm3] 2R_22121521_SNP [dm6]	A	G	2.350e^-4	0.836	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3911068	2R_3911068_SNP [dm3] 2R_8023563_SNP [dm6]	G	A	2.356e^-4	0.836	EXON CR45267
2R	16173121	2R_16173121_SNP [dm3] 2R_20285616_SNP [dm6]	G	T	2.357e^-4	0.836	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21903655	3L_21903655_SNP [dm3] 3L_21910555_SNP [dm6]	T	C	2.361e^-4	0.836	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3884823	3R_3884823_SNP [dm3] 3R_8059101_SNP [dm6]	C	T	2.362e^-4	0.836	UPSTREAM mAChR-B INTERGENIC
3L	18754415	3L_18754415_SNP [dm3] 3L_18761315_SNP [dm6]	A	T	2.373e^-4	0.836	INTRON ftz-f1
3R	22603585	3R_22603585_SNP [dm3] 3R_26777863_SNP [dm6]	G	T	2.380e^-4	0.836	INTERGENIC
2R	4548116	2R_4548116_SNP [dm3] 2R_8660611_SNP [dm6]	T	A	2.386e^-4	0.836	INTRON ptc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	5640772	3L_5640772_SNP [dm3] 3L_5647672_SNP [dm6]	C	G	2.391e^-4	0.836	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11478767	2L_11478767_SNP [dm3] 2L_11478767_SNP [dm6]	T	C	2.403e^-4	0.836	INTERGENIC
2L	18584237	2L_18584237_SNP [dm3] 2L_18584237_SNP [dm6]	T	C	2.415e^-4	0.836	INTRON Pde11
3L	17977225	3L_17977225_SNP [dm3] 3L_17984125_SNP [dm6]	T	G	2.416e^-4	0.836	INTRON Eip75B
3L	3861556	3L_3861556_SNP [dm3] 3L_3861556_SNP [dm6]	G	A	2.424e^-4	0.836	UTR_3_PRIME Awh
2R	19978833	2R_19978833_SNP [dm3] 2R_24091310_SNP [dm6]	G	A	2.425e^-4	0.836	SYNONYMOUS_CODING snama DOWNSTREAM gek
X	9422390	X_9422390_SNP [dm3] X_9528357_SNP [dm6]	T	C	2.429e^-4	0.836	INTRON CG32700
3R	23773136	3R_23773136_SNP [dm3] 3R_27947414_SNP [dm6]	C	A	2.445e^-4	0.836	UTR_5_PRIME mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10947808	3L_10947808_SNP [dm3] 3L_10954708_SNP [dm6]	A	C	2.445e^-4	0.836	INTERGENIC
2R	11662174	2R_11662174_SNP [dm3] 2R_15774669_SNP [dm6]	G	A	2.449e^-4	0.836	NON_SYNONYMOUS_CODING Zasp52 UTR_5_PRIME Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10218432	3L_10218432_SNP [dm3] 3L_10225332_SNP [dm6]	T	A	2.466e^-4	0.836	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4300461	2L_4300461_SNP [dm3] 2L_4300461_SNP [dm6]	A	G	2.469e^-4	0.836	INTRON tutl
X	12178874	X_12178874_INS [dm3] X_12284841_INS [dm6]	T	TT	2.473e^-4	0.836	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
3L	7023974	3L_7023974_SNP [dm3] 3L_7030874_SNP [dm6]	A	C	2.473e^-4	0.836	INTRON Mp
2L	3891442	2L_3891442_SNP [dm3] 2L_3891442_SNP [dm6]	C	A	2.480e^-4	0.836	INTRON capu
X	18847600	X_18847600_SNP [dm3] X_18953567_SNP [dm6]	A	G	2.486e^-4	0.836	INTRON CG43759
3L	12383472	3L_12383472_SNP [dm3] 3L_12390372_SNP [dm6]	T	C	2.487e^-4	0.836	INTRON Ncc69
3R	26923415	3R_26923415_SNP [dm3] 3R_31097693_SNP [dm6]	C	T	2.498e^-4	0.836	UPSTREAM CG11317 INTERGENIC
2R	3886485	2R_3886485_SNP [dm3] 2R_7998980_SNP [dm6]	G	A	2.498e^-4	0.836	UPSTREAM Hey INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26330802	3R_26330802_SNP [dm3] 3R_30505080_SNP [dm6]	C	G	2.500e^-4	0.836	NON_SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG15539
2R	13622403	2R_13622403_SNP [dm3] 2R_17734898_SNP [dm6]	G	A	2.508e^-4	0.836	UTR_3_PRIME CG6406 DOWNSTREAM CG34195
3R	16420495	3R_16420495_SNP [dm3] 3R_20594773_SNP [dm6]	C	T	2.508e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	17813459	3R_17813459_DEL [dm3] 3R_21987737_DEL [dm6]	ATA	A	2.514e^-4	0.836	INTRON Eip93F
3L	11929852	3L_11929852_SNP [dm3] 3L_11936752_SNP [dm6]	A	G	2.521e^-4	0.836	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23452015	3R_23452015_SNP [dm3] 3R_27626293_SNP [dm6]	C	A	2.542e^-4	0.836	UPSTREAM CG5612 INTRON Tusp
2L	2998861	2L_2998861_SNP [dm3] 2L_2998861_SNP [dm6]	C	T	2.546e^-4	0.836	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h
3L	10218441	3L_10218441_SNP [dm3] 3L_10225341_SNP [dm6]	G	A	2.551e^-4	0.836	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6861852	2R_6861852_SNP [dm3] 2R_10974347_SNP [dm6]	T	G	2.552e^-4	0.836	INTERGENIC
2L	7336773	2L_7336773_SNP [dm3] 2L_7336773_SNP [dm6]	C	A	2.552e^-4	0.836	INTRON Wnt6
2R	4075154	2R_4075154_SNP [dm3] 2R_8187649_SNP [dm6]	T	C	2.562e^-4	0.836	INTRON LRP1
3R	22896490	3R_22896490_DEL [dm3] 3R_27070768_DEL [dm6]	TT	T	2.566e^-4	0.836	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3862016	3R_3862016_SNP [dm3] 3R_8036294_SNP [dm6]	G	T	2.567e^-4	0.836	NON_SYNONYMOUS_CODING unc-45
3L	3780823	3L_3780823_SNP [dm3] 3L_3780823_SNP [dm6]	C	T	2.575e^-4	0.836	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2974305	3L_2974305_SNP [dm3] 3L_2974305_SNP [dm6]	G	T	2.575e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20214936	2R_20214936_SNP [dm3] 2R_24327413_SNP [dm6]	G	A	2.577e^-4	0.836	INTRON CR44810
X	17021883	X_17021883_SNP [dm3] X_17127850_SNP [dm6]	C	G	2.579e^-4	0.836	SYNONYMOUS_CODING CG5004
2L	8303657	2L_8303657_SNP [dm3] 2L_8303657_SNP [dm6]	C	T	2.579e^-4	0.836	SYNONYMOUS_CODING Scgalpha UPSTREAM wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9689754	X_9689754_SNP [dm3] X_9795721_SNP [dm6]	T	A	2.581e^-4	0.836	INTRON CG32698
2R	18053091	2R_18053091_SNP [dm3] 2R_22165586_SNP [dm6]	T	C	2.585e^-4	0.836	UPSTREAM CG34206 INTRON a
3R	15182111	3R_15182111_SNP [dm3] 3R_19356389_SNP [dm6]	T	A	2.587e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	19169693	X_19169693_INS [dm3] X_19275660_INS [dm6]	T	TGTT	2.591e^-4	0.836	UPSTREAM CG32537 INTRON CG32537 & 1 other
3R	26216686	3R_26216686_DEL [dm3] 3R_30390964_DEL [dm6]	TT	T	2.591e^-4	0.836	DOWNSTREAM Fer2LCH INTERGENIC
2R	18053190	2R_18053190_INS [dm3] 2R_22165685_INS [dm6]	T	TCT	2.594e^-4	0.836	INTRON a
3L	21927036	3L_21927036_SNP [dm3] 3L_21933936_SNP [dm6]	G	A	2.603e^-4	0.836	UPSTREAM CG7442 INTERGENIC
2L	7458543	2L_7458543_SNP [dm3] 2L_7458543_SNP [dm6]	T	C	2.619e^-4	0.836	NON_SYNONYMOUS_CODING Gr28b INTRON Gr28b
3L	6570133	3L_6570133_SNP [dm3] 3L_6577033_SNP [dm6]	C	G	2.629e^-4	0.836	INTRON CG18769 & 1 other
3L	14603664	3L_14603664_SNP [dm3] 3L_14610564_SNP [dm6]	A	C	2.632e^-4	0.836	INTERGENIC
3L	21915282	3L_21915282_SNP [dm3] 3L_21922182_SNP [dm6]	C	T	2.633e^-4	0.836	INTRON mub
X	14767585	X_14767585_SNP [dm3] X_14873552_SNP [dm6]	G	T	2.648e^-4	0.836	INTRON Flo2
3R	21966598	3R_21966598_SNP [dm3] 3R_26140876_SNP [dm6]	T	G	2.659e^-4	0.836	INTERGENIC
3R	16085006	3R_16085006_SNP [dm3] 3R_20259284_SNP [dm6]	C	T	2.665e^-4	0.836	INTRON cic
X	12897542	X_12897542_SNP [dm3] X_13003509_SNP [dm6]	C	T	2.671e^-4	0.836	DOWNSTREAM CG15719 INTRON rad
3L	7423978	3L_7423978_SNP [dm3] 3L_7430878_SNP [dm6]	C	G	2.672e^-4	0.836	INTRON CG42458
X	9791605	X_9791605_SNP [dm3] X_9897572_SNP [dm6]	G	A	2.674e^-4	0.836	INTRON CG15249
2R	11062825	2R_11062825_SNP [dm3] 2R_15175320_SNP [dm6]	C	T	2.682e^-4	0.836	INTRON igl
3L	7050229	3L_7050229_INS [dm3] 3L_7057129_INS [dm6]	T	TACAAC	2.684e^-4	0.836	INTERGENIC
2R	4013508	2R_4013508_SNP [dm3] 2R_8126003_SNP [dm6]	G	A	2.694e^-4	0.836	NON_SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	6136402	X_6136402_SNP [dm3] X_6242369_SNP [dm6]	A	G	2.694e^-4	0.836	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	4203012	2L_4203012_SNP [dm3] 2L_4203012_SNP [dm6]	G	T	2.697e^-4	0.836	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2L	3000141	2L_3000141_SNP [dm3] 2L_3000141_SNP [dm6]	C	T	2.699e^-4	0.836	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15394027	2R_15394027_SNP [dm3] 2R_19506522_SNP [dm6]	G	C	2.699e^-4	0.836	UPSTREAM tRNA:H:56E INTERGENIC
2L	4211037	2L_4211037_SNP [dm3] 2L_4211037_SNP [dm6]	T	C	2.701e^-4	0.836	INTRON ft
2R	12901668	2R_12901668_SNP [dm3] 2R_17014163_SNP [dm6]	T	C	2.710e^-4	0.836	INTRON Ehbp1
2L	14420113	2L_14420113_SNP [dm3] 2L_14420113_SNP [dm6]	A	G	2.714e^-4	0.836	INTERGENIC
2R	10670450	2R_10670450_SNP [dm3] 2R_14782945_SNP [dm6]	C	A	2.725e^-4	0.836	INTRON kn
X	9179433	X_9179433_DEL [dm3] X_9285400_DEL [dm6]	AGAAA	A	2.730e^-4	0.836	INTRON lz	TF binding site BDTNP1_TFBS_dl
2R	4495164	2R_4495164_SNP [dm3] 2R_8607659_SNP [dm6]	T	G	2.730e^-4	0.836	INTRON rgr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13584657	2L_13584657_SNP [dm3] 2L_13584657_SNP [dm6]	C	A	2.732e^-4	0.836	INTRON kuz
3R	10412967	3R_10412967_SNP [dm3] 3R_14587245_SNP [dm6]	C	G	2.738e^-4	0.836	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6740078	2R_6740078_SNP [dm3] 2R_10852573_SNP [dm6]	A	G	2.739e^-4	0.836	UPSTREAM CR45136 INTRON CG30015
X	8878169	X_8878169_SNP [dm3] X_8984136_SNP [dm6]	C	G	2.751e^-4	0.836	SYNONYMOUS_CODING CG12662 INTRON rdgA & 1 other
3R	12036564	3R_12036564_SNP [dm3] 3R_16210842_SNP [dm6]	T	C	2.752e^-4	0.836	INTERGENIC
3L	14191927	3L_14191927_SNP [dm3] 3L_14198827_SNP [dm6]	G	C	2.752e^-4	0.836	INTRON nuf
3R	21485300	3R_21485300_SNP [dm3] 3R_25659578_SNP [dm6]	G	A	2.755e^-4	0.836	INTRON Tnks	TF binding site mE1_TFBS_inv
3R	23795052	3R_23795052_SNP [dm3] 3R_27969330_SNP [dm6]	T	A	2.761e^-4	0.836	INTRON betaTub97EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4375106	X_4375106_DEL [dm3] X_4481073_DEL [dm6]	AGAA	A	2.764e^-4	0.836	INTRON CR32773 & 1 other
2L	7198807	2L_7198807_SNP [dm3] 2L_7198807_SNP [dm6]	C	T	2.767e^-4	0.836	INTRON CG4502
2R	16927053	2R_16927053_SNP [dm3] 2R_21039548_SNP [dm6]	T	C	2.772e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18464803	2R_18464803_SNP [dm3] 2R_22577298_SNP [dm6]	G	C	2.772e^-4	0.836	INTRON dnr1
3R	3877043	3R_3877043_SNP [dm3] 3R_8051321_SNP [dm6]	C	T	2.775e^-4	0.836	INTRON CG43060
2L	13029774	2L_13029774_SNP [dm3] 2L_13029774_SNP [dm6]	T	G	2.777e^-4	0.836	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23547363	3R_23547363_SNP [dm3] 3R_27721641_SNP [dm6]	G	A	2.781e^-4	0.836	INTERGENIC
3L	7050219	3L_7050219_SNP [dm3] 3L_7057119_SNP [dm6]	A	G	2.783e^-4	0.836	INTERGENIC
3L	7049045	3L_7049045_SNP [dm3] 3L_7055945_SNP [dm6]	A	T	2.786e^-4	0.836	INTERGENIC
3R	8815104	3R_8815104_SNP [dm3] 3R_12989382_SNP [dm6]	C	A	2.789e^-4	0.836	NON_SYNONYMOUS_CODING CG31342 UPSTREAM CG14383	TF binding site mE1_TFBS_cad
2L	13584689	2L_13584689_SNP [dm3] 2L_13584689_SNP [dm6]	G	T	2.798e^-4	0.836	INTRON kuz
3L	20696965	3L_20696965_DEL [dm3] 3L_20703865_DEL [dm6]	CGGCTAACAAC...	C	2.800e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	3879404	3R_3879404_SNP [dm3] 3R_8053682_SNP [dm6]	G	T	2.803e^-4	0.836	INTRON CG43060
X	17664612	X_17664612_SNP [dm3] X_17770579_SNP [dm6]	A	C	2.804e^-4	0.836	INTRON unc-4
3L	7050236	3L_7050236_SNP [dm3] 3L_7057136_SNP [dm6]	A	T	2.808e^-4	0.836	INTERGENIC
2L	17239904	2L_17239904_SNP [dm3] 2L_17239904_SNP [dm6]	A	G	2.811e^-4	0.836	INTRON beat-IIIc
3L	13466841	3L_13466841_SNP [dm3] 3L_13473741_SNP [dm6]	A	G	2.816e^-4	0.836	INTRON CG10089
3L	12102830	3L_12102830_DEL [dm3] 3L_12109730_DEL [dm6]	ATA	A	2.818e^-4	0.836	INTERGENIC
2R	10459815	2R_10459815_SNP [dm3] 2R_14572310_SNP [dm6]	C	T	2.826e^-4	0.836	SYNONYMOUS_CODING LamC INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6861817	2R_6861817_SNP [dm3] 2R_10974312_SNP [dm6]	A	C	2.827e^-4	0.836	INTERGENIC
2L	9454453	2L_9454453_SNP [dm3] 2L_9454453_SNP [dm6]	C	T	2.832e^-4	0.836	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5299120	2L_5299120_SNP [dm3] 2L_5299120_SNP [dm6]	A	T	2.848e^-4	0.836	UPSTREAM vri INTRON vri	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10371156	2L_10371156_SNP [dm3] 2L_10371156_SNP [dm6]	G	A	2.851e^-4	0.836	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23718310	3R_23718310_SNP [dm3] 3R_27892588_SNP [dm6]	A	G	2.853e^-4	0.836	INTRON CG34353
2R	9368985	2R_9368985_SNP [dm3] 2R_13481480_SNP [dm6]	A	G	2.853e^-4	0.836	INTRON arr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6990019	2L_6990019_SNP [dm3] 2L_6990019_SNP [dm6]	A	T	2.857e^-4	0.836	INTRON uif
2L	4915790	2L_4915790_SNP [dm3] 2L_4915790_SNP [dm6]	A	G	2.857e^-4	0.836	UPSTREAM hoe1 INTRON hoe1
2L	15210914	2L_15210914_SNP [dm3] 2L_15210914_SNP [dm6]	G	A	2.859e^-4	0.836	INTERGENIC
3L	2974306	3L_2974306_SNP [dm3] 3L_2974306_SNP [dm6]	T	C	2.866e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16650811	3R_16650811_SNP [dm3] 3R_20825089_SNP [dm6]	T	C	2.869e^-4	0.836	UTR_3_PRIME AdSS UPSTREAM CG17272	TF binding site mE1_TFBS_cad
X	8216164	X_8216164_SNP [dm3] X_8322131_SNP [dm6]	G	C	2.872e^-4	0.836	INTRON nAChRalpha3
3L	21899476	3L_21899476_SNP [dm3] 3L_21906376_SNP [dm6]	A	T	2.885e^-4	0.836	INTRON mub	TF binding site mE1_TFBS_HSA
2L	20253298	2L_20253298_SNP [dm3] 2L_20253298_SNP [dm6]	T	A	2.888e^-4	0.836	DOWNSTREAM CR40465 INTERGENIC
2R	3931126	2R_3931126_SNP [dm3] 2R_8043621_SNP [dm6]	T	C	2.890e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	1733510	2L_1733510_SNP [dm3] 2L_1733510_SNP [dm6]	A	G	2.898e^-4	0.836	INTRON CG17646
2R	6509693	2R_6509693_SNP [dm3] 2R_10622188_SNP [dm6]	G	T	2.901e^-4	0.836	UPSTREAM CG11883 INTRON CG11883
3R	19569471	3R_19569471_SNP [dm3] 3R_23743749_SNP [dm6]	A	T	2.903e^-4	0.836	INTRON Hmgcr
3R	26038741	3R_26038741_SNP [dm3] 3R_30213019_SNP [dm6]	C	T	2.908e^-4	0.836	DOWNSTREAM CecB & 1 other INTRON Cec2
2R	7045608	2R_7045608_SNP [dm3] 2R_11158103_SNP [dm6]	G	A	2.908e^-4	0.836	UPSTREAM shn INTRON CG13229
2L	18586443	2L_18586443_DEL [dm3] 2L_18586443_DEL [dm6]	CAC	C	2.909e^-4	0.836	INTRON Pde11
3R	18162870	3R_18162870_SNP [dm3] 3R_22337148_SNP [dm6]	A	G	2.920e^-4	0.836	NON_SYNONYMOUS_CODING CG5388
3R	6999443	3R_6999443_SNP [dm3] 3R_11173721_SNP [dm6]	G	C	2.924e^-4	0.836	NON_SYNONYMOUS_CODING Ugt86Dj
3L	21927037	3L_21927037_SNP [dm3] 3L_21933937_SNP [dm6]	G	A	2.934e^-4	0.836	UPSTREAM CG7442 INTERGENIC
2L	16440636	2L_16440636_SNP [dm3] 2L_16440636_SNP [dm6]	A	T	2.937e^-4	0.836	INTRON CG5888
3R	3856837	3R_3856837_SNP [dm3] 3R_8031115_SNP [dm6]	G	T	2.937e^-4	0.836	UPSTREAM CG2747 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	19595463	3R_19595463_SNP [dm3] 3R_23769741_SNP [dm6]	C	A	2.938e^-4	0.836	SYNONYMOUS_CODING tst DOWNSTREAM CG10375
3L	13467102	3L_13467102_DEL [dm3] 3L_13474002_DEL [dm6]	AA	A	2.938e^-4	0.836	INTRON CG10089
2L	18584426	2L_18584426_SNP [dm3] 2L_18584426_SNP [dm6]	G	A	2.948e^-4	0.836	INTRON Pde11
3L	7050232	3L_7050232_INS [dm3] 3L_7057132_INS [dm6]	A	ATT	2.948e^-4	0.836	INTERGENIC
3L	9543255	3L_9543255_DEL [dm3] 3L_9550155_DEL [dm6]	CTTTTG	A	2.953e^-4	0.836	INTRON CG42673
3L	18024519	3L_18024519_DEL [dm3] 3L_18031419_DEL [dm6]	AA	A	2.954e^-4	0.836	INTRON Eip75B
2R	10954368	2R_10954368_SNP [dm3] 2R_15066863_SNP [dm6]	A	G	2.957e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17333137	2R_17333137_SNP [dm3] 2R_21445632_SNP [dm6]	T	G	2.958e^-4	0.836	INTRON Sdc
2R	6231304	2R_6231304_SNP [dm3] 2R_10343799_SNP [dm6]	C	T	2.969e^-4	0.836	INTRON CG42732
2R	4017374	2R_4017374_SNP [dm3] 2R_8129869_SNP [dm6]	G	T	2.975e^-4	0.836	NON_SYNONYMOUS_CODING Pbp49 UTR_3_PRIME CG42516 DOWNSTREAM Socs44A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3905784	3R_3905784_SNP [dm3] 3R_8080062_SNP [dm6]	G	T	2.980e^-4	0.836	INTRON mAChR-B
3R	3877044	3R_3877044_SNP [dm3] 3R_8051322_SNP [dm6]	C	A	2.986e^-4	0.836	INTRON CG43060
X	17021978	X_17021978_SNP [dm3] X_17127945_SNP [dm6]	G	A	2.998e^-4	0.836	INTRON CG5004
3R	23610495	3R_23610495_SNP [dm3] 3R_27784773_SNP [dm6]	T	G	3.000e^-4	0.836	INTRON CG34353
3L	15865251	3L_15865251_DEL [dm3] 3L_15872151_DEL [dm6]	AAAACTGAAGAATA...	A	3.005e^-4	0.836	INTRON pHCl
3R	26928693	3R_26928693_DEL [dm3] 3R_31102971_DEL [dm6]	ATGGCCTCAA	A	3.018e^-4	0.836	INTERGENIC
3L	11858969	3L_11858969_SNP [dm3] 3L_11865869_SNP [dm6]	C	A	3.023e^-4	0.836	INTRON CG44837
2R	4012704	2R_4012704_SNP [dm3] 2R_8125199_SNP [dm6]	G	T	3.029e^-4	0.836	SYNONYMOUS_CODING coil DOWNSTREAM Nup50
2R	4013244	2R_4013244_SNP [dm3] 2R_8125739_SNP [dm6]	T	C	3.029e^-4	0.836	NON_SYNONYMOUS_CODING coil DOWNSTREAM Nup50	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	14900236	3L_14900236_SNP [dm3] 3L_14907136_SNP [dm6]	A	G	3.030e^-4	0.836	INTRON DCX-EMAP
3L	18170329	3L_18170329_SNP [dm3] 3L_18177229_SNP [dm6]	G	A	3.037e^-4	0.836	INTRON W	TF binding site BDTNP1_TFBS_twi
2R	3930250	2R_3930250_SNP [dm3] 2R_8042745_SNP [dm6]	A	G	3.044e^-4	0.836	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc
X	17548679	X_17548679_SNP [dm3] X_17654646_SNP [dm6]	G	A	3.050e^-4	0.836	SYNONYMOUS_CODING IntS2	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16892391	X_16892391_INS [dm3] X_16998358_INS [dm6]	A	AC	3.061e^-4	0.836	INTRON CG45002
X	21874516	X_21874516_MNP [dm3] X_22472680_MNP [dm6]	CAC	TCT	3.067e^-4	0.836	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3780789	3L_3780789_INS [dm3] 3L_3780789_INS [dm6]	G	GCTGCTG	3.070e^-4	0.836	CODON_INSERTION CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15480662	3L_15480662_SNP [dm3] 3L_15487562_SNP [dm6]	G	A	3.076e^-4	0.836	INTERGENIC
2R	4583280	2R_4583280_SNP [dm3] 2R_8695775_SNP [dm6]	A	C	3.084e^-4	0.836	UTR_5_PRIME CG8586 UPSTREAM CG8738 INTRON CG8586
2R	4112996	2R_4112996_SNP [dm3] 2R_8225491_SNP [dm6]	A	C	3.086e^-4	0.836	UTR_3_PRIME LRP1
2R	10214815	2R_10214815_SNP [dm3] 2R_14327310_SNP [dm6]	A	G	3.087e^-4	0.836	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13528562	2R_13528562_SNP [dm3] 2R_17641057_SNP [dm6]	C	T	3.097e^-4	0.836	INTERGENIC
2R	17890855	2R_17890855_SNP [dm3] 2R_22003350_SNP [dm6]	T	C	3.098e^-4	0.836	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14150517	2R_14150517_SNP [dm3] 2R_18263012_SNP [dm6]	A	G	3.100e^-4	0.836	INTERGENIC
2R	3935571	2R_3935571_SNP [dm3] 2R_8048066_SNP [dm6]	C	T	3.108e^-4	0.836	INTERGENIC
3R	14832108	3R_14832108_SNP [dm3] 3R_19006386_SNP [dm6]	G	A	3.110e^-4	0.836	INTRON gukh
2L	17687202	2L_17687202_SNP [dm3] 2L_17687202_SNP [dm6]	T	A	3.114e^-4	0.836	INTRON CadN
2R	9409193	2R_9409193_SNP [dm3] 2R_13521688_SNP [dm6]	T	C	3.136e^-4	0.836	UPSTREAM CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
X	2140026	X_2140026_SNP [dm3] X_2245993_SNP [dm6]	C	T	3.137e^-4	0.836	UTR_3_PRIME fs_1_K10 UPSTREAM Or2a
2R	13394169	2R_13394169_SNP [dm3] 2R_17506664_SNP [dm6]	T	C	3.141e^-4	0.836	UTR_3_PRIME CG43164 INTRON CG43164
X	2283750	X_2283750_SNP [dm3] X_2389717_SNP [dm6]	G	A	3.147e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	14794690	X_14794690_SNP [dm3] X_14900657_SNP [dm6]	C	A	3.148e^-4	0.836	INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19519301	2R_19519301_SNP [dm3] 2R_23631778_SNP [dm6]	C	A	3.152e^-4	0.836	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17813512	3R_17813512_SNP [dm3] 3R_21987790_SNP [dm6]	A	G	3.160e^-4	0.836	INTRON Eip93F
2L	5444837	2L_5444837_SNP [dm3] 2L_5444837_SNP [dm6]	G	A	3.160e^-4	0.836	INTERGENIC
3R	21780340	3R_21780340_SNP [dm3] 3R_25954618_SNP [dm6]	G	T	3.160e^-4	0.836	INTRON CCAP-R
3L	6075711	3L_6075711_SNP [dm3] 3L_6082611_SNP [dm6]	A	T	3.163e^-4	0.836	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10967893	2R_10967893_SNP [dm3] 2R_15080388_SNP [dm6]	A	G	3.170e^-4	0.836	INTERGENIC
2L	18584252	2L_18584252_SNP [dm3] 2L_18584252_SNP [dm6]	G	A	3.176e^-4	0.836	INTRON Pde11
2R	14451896	2R_14451896_SNP [dm3] 2R_18564391_SNP [dm6]	G	A	3.181e^-4	0.836	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7488252	2L_7488252_SNP [dm3] 2L_7488252_SNP [dm6]	A	G	3.185e^-4	0.836	INTRON Ziz
3L	6098668	3L_6098668_SNP [dm3] 3L_6105568_SNP [dm6]	C	T	3.186e^-4	0.836	INTRON Ets65A	TF binding site BDTNP1_TFBS_slp1
3L	15683970	3L_15683970_SNP [dm3] 3L_15690870_SNP [dm6]	T	A	3.191e^-4	0.836	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	8447645	2L_8447645_SNP [dm3] 2L_8447645_SNP [dm6]	G	A	3.198e^-4	0.836	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
2L	5063027	2L_5063027_SNP [dm3] 2L_5063027_SNP [dm6]	C	T	3.199e^-4	0.836	SYNONYMOUS_CODING qtc UTR_5_PRIME qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24024111	3R_24024111_SNP [dm3] 3R_28198389_SNP [dm6]	G	T	3.203e^-4	0.836	INTRON CG34354
X	16431147	X_16431147_SNP [dm3] X_16537114_SNP [dm6]	G	A	3.206e^-4	0.836	INTERGENIC
2L	7457303	2L_7457303_SNP [dm3] 2L_7457303_SNP [dm6]	C	G	3.209e^-4	0.836	NON_SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b INTRON Gr28b
3R	19906136	3R_19906136_SNP [dm3] 3R_24080414_SNP [dm6]	G	A	3.211e^-4	0.836	INTRON 4EHP
3R	26756165	3R_26756165_SNP [dm3] 3R_30930443_SNP [dm6]	C	G	3.212e^-4	0.836	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
2L	6252522	2L_6252522_SNP [dm3] 2L_6252522_SNP [dm6]	T	A	3.215e^-4	0.836	UPSTREAM Ddr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21874489	X_21874489_SNP [dm3] X_22472653_SNP [dm6]	A	T	3.218e^-4	0.836	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22376081	3R_22376081_SNP [dm3] 3R_26550359_SNP [dm6]	A	T	3.225e^-4	0.836	INTRON scrib	TF binding site BDTNP1_TFBS_twi
3R	4998578	3R_4998578_DEL [dm3] 3R_9172856_DEL [dm6]	GC	G	3.226e^-4	0.836	INTRON pum	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26490574	3R_26490574_SNP [dm3] 3R_30664852_SNP [dm6]	C	A	3.232e^-4	0.836	EXON CR45191
2R	2880518	2R_2880518_INS [dm3] 2R_6993013_INS [dm6]	T	TT	3.233e^-4	0.836	UTR_5_PRIME CG30159 INTRON Tsp42Ea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14078146	X_14078146_SNP [dm3] X_14184113_SNP [dm6]	G	T	3.236e^-4	0.836	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
3L	21915333	3L_21915333_SNP [dm3] 3L_21922233_SNP [dm6]	A	T	3.236e^-4	0.836	INTRON mub
X	4785993	X_4785993_SNP [dm3] X_4891960_SNP [dm6]	A	T	3.242e^-4	0.836	INTRON CG42594
3L	10807799	3L_10807799_SNP [dm3] 3L_10814699_SNP [dm6]	C	T	3.242e^-4	0.836	UPSTREAM CG42831 INTERGENIC
3R	16888215	3R_16888215_SNP [dm3] 3R_21062493_SNP [dm6]	A	T	3.246e^-4	0.836	SYNONYMOUS_CODING Cortactin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12875437	X_12875437_SNP [dm3] X_12981404_SNP [dm6]	G	A	3.251e^-4	0.836	INTERGENIC
3R	10372397	3R_10372397_SNP [dm3] 3R_14546675_SNP [dm6]	T	C	3.255e^-4	0.836	INTRON Pde6
2R	8672801	2R_8672801_INS [dm3] 2R_12785296_INS [dm6]	G	GTG	3.257e^-4	0.836	INTRON sca EXON CR45137	regulatory region REDfly_CRMs
3L	4797011	3L_4797011_SNP [dm3] 3L_4797011_SNP [dm6]	T	A	3.265e^-4	0.836	DOWNSTREAM RhoGEF64C INTERGENIC
2L	14419350	2L_14419350_SNP [dm3] 2L_14419350_SNP [dm6]	T	A	3.266e^-4	0.836	INTERGENIC
3R	13199872	3R_13199872_SNP [dm3] 3R_17374150_SNP [dm6]	C	G	3.268e^-4	0.836	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13199890	3R_13199890_SNP [dm3] 3R_17374168_SNP [dm6]	A	C	3.268e^-4	0.836	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13398001	3R_13398001_DEL [dm3] 3R_17572279_DEL [dm6]	CCTTTACTGTTTC...	C	3.276e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	17333158	2R_17333158_SNP [dm3] 2R_21445653_SNP [dm6]	G	C	3.279e^-4	0.836	INTRON Sdc
2L	7336746	2L_7336746_SNP [dm3] 2L_7336746_SNP [dm6]	C	A	3.287e^-4	0.836	INTRON Wnt6
3L	17188705	3L_17188705_SNP [dm3] 3L_17195605_SNP [dm6]	T	C	3.287e^-4	0.836	INTRON Rbp6	TF binding site mE1_TFBS_inv
3R	25550232	3R_25550232_SNP [dm3] 3R_29724510_SNP [dm6]	G	A	3.291e^-4	0.836	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	17664061	X_17664061_SNP [dm3] X_17770028_SNP [dm6]	G	C	3.299e^-4	0.836	INTRON unc-4
3L	1740840	3L_1740840_SNP [dm3] 3L_1740840_SNP [dm6]	C	A	3.300e^-4	0.836	UPSTREAM Gk INTRON Gk
3R	16716956	3R_16716956_SNP [dm3] 3R_20891234_SNP [dm6]	A	T	3.302e^-4	0.836	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	16330072	3R_16330072_SNP [dm3] 3R_20504350_SNP [dm6]	C	G	3.302e^-4	0.836	UPSTREAM MtnB & 1 other INTERGENIC
3L	15477529	3L_15477529_SNP [dm3] 3L_15484429_SNP [dm6]	T	C	3.302e^-4	0.836	UTR_3_PRIME Ran-like
3R	26216682	3R_26216682_SNP [dm3] 3R_30390960_SNP [dm6]	C	G	3.315e^-4	0.836	DOWNSTREAM Fer2LCH INTERGENIC
2R	17602446	2R_17602446_SNP [dm3] 2R_21714941_SNP [dm6]	C	T	3.317e^-4	0.836	INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	437716	3L_437716_SNP [dm3] 3L_437716_SNP [dm6]	G	A	3.321e^-4	0.836	START_GAINED klar UTR_5_PRIME klar INTRON klar
2L	14919147	2L_14919147_INS [dm3] 2L_14919147_INS [dm6]	T	TTTA	3.325e^-4	0.836	INTRON CG42313
X	6425282	X_6425282_SNP [dm3] X_6531249_SNP [dm6]	G	A	3.325e^-4	0.836	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other	TF binding site BDTNP1_TFBS_sna
3R	5911996	3R_5911996_SNP [dm3] 3R_10086274_SNP [dm6]	C	G	3.326e^-4	0.836	INTRON CR45054	TF binding site mE1_TFBS_Trl
X	18842214	X_18842214_SNP [dm3] X_18948181_SNP [dm6]	G	A	3.330e^-4	0.836	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	743911	2L_743911_SNP [dm3] 2L_743911_SNP [dm6]	A	G	3.331e^-4	0.836	INTRON Eaat2
3L	21899452	3L_21899452_SNP [dm3] 3L_21906352_SNP [dm6]	A	T	3.342e^-4	0.836	INTRON mub	TF binding site mE1_TFBS_HSA
X	18417294	X_18417294_INS [dm3] X_18523261_INS [dm6]	C	CC	3.343e^-4	0.836	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18417297	X_18417297_INS [dm3] X_18523264_INS [dm6]	A	AATTGA	3.343e^-4	0.836	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11259783	3R_11259783_INS [dm3] 3R_15434061_INS [dm6]	A	AGA	3.346e^-4	0.836	INTRON CG6118
3R	26330586	3R_26330586_SNP [dm3] 3R_30504864_SNP [dm6]	A	G	3.346e^-4	0.836	NON_SYNONYMOUS_CODING PH4alphaSG1
3R	18522922	3R_18522922_SNP [dm3] 3R_22697200_SNP [dm6]	A	G	3.347e^-4	0.836	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad
3L	14432705	3L_14432705_SNP [dm3] 3L_14439605_SNP [dm6]	T	G	3.350e^-4	0.836	INTRON bbg
X	10263721	X_10263721_SNP [dm3] X_10369688_SNP [dm6]	T	G	3.352e^-4	0.836	INTRON CG17841
X	17664033	X_17664033_SNP [dm3] X_17770000_SNP [dm6]	T	A	3.354e^-4	0.836	INTRON unc-4
X	17061851	X_17061851_INS [dm3] X_17167818_INS [dm6]	C	CTTACC	3.367e^-4	0.836	INTRON baz
X	17061861	X_17061861_DEL [dm3] X_17167828_DEL [dm6]	GCGATCG	A	3.367e^-4	0.836	INTRON baz
2R	14452466	2R_14452466_SNP [dm3] 2R_18564961_SNP [dm6]	A	G	3.377e^-4	0.836	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18947274	2L_18947274_SNP [dm3] 2L_18947274_SNP [dm6]	G	A	3.387e^-4	0.836	DOWNSTREAM CR42848 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	22232414	X_22232414_SNP [dm3] X_22830578_SNP [dm6]	G	A	3.393e^-4	0.836	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	13584579	2L_13584579_SNP [dm3] 2L_13584579_SNP [dm6]	A	C	3.397e^-4	0.836	INTRON kuz
3R	21909582	3R_21909582_SNP [dm3] 3R_26083860_SNP [dm6]	G	A	3.404e^-4	0.836	INTRON dys
3L	16440986	3L_16440986_SNP [dm3] 3L_16447886_SNP [dm6]	C	T	3.407e^-4	0.836	INTRON CG33158 & 1 other
2L	2688501	2L_2688501_SNP [dm3] 2L_2688501_SNP [dm6]	T	C	3.416e^-4	0.836	INTRON CG31690
3R	16422001	3R_16422001_SNP [dm3] 3R_20596279_SNP [dm6]	C	T	3.418e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9399683	3R_9399683_SNP [dm3] 3R_13573961_SNP [dm6]	G	A	3.424e^-4	0.836	UPSTREAM CR43848 INTERGENIC
2L	13584660	2L_13584660_SNP [dm3] 2L_13584660_SNP [dm6]	T	A	3.425e^-4	0.836	INTRON kuz
2L	4692611	2L_4692611_SNP [dm3] 2L_4692611_SNP [dm6]	T	G	3.433e^-4	0.836	INTERGENIC
2L	11951355	2L_11951355_SNP [dm3] 2L_11951355_SNP [dm6]	C	A	3.433e^-4	0.836	DOWNSTREAM CR43314 INTERGENIC
2L	13029582	2L_13029582_SNP [dm3] 2L_13029582_SNP [dm6]	G	A	3.433e^-4	0.836	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_chinmo
3R	22897261	3R_22897261_SNP [dm3] 3R_27071539_SNP [dm6]	A	C	3.438e^-4	0.836	INTERGENIC
X	20434775	X_20434775_SNP [dm3] X_20563748_SNP [dm6]	A	C	3.445e^-4	0.836	INTRON RunxB
X	14767630	X_14767630_SNP [dm3] X_14873597_SNP [dm6]	C	G	3.447e^-4	0.836	INTRON Flo2
3R	26029300	3R_26029300_SNP [dm3] 3R_30203578_SNP [dm6]	A	G	3.448e^-4	0.836	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15274470	2L_15274470_SNP [dm3] 2L_15274470_SNP [dm6]	T	A	3.457e^-4	0.836	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	494511	3L_494511_SNP [dm3] 3L_494511_SNP [dm6]	G	A	3.468e^-4	0.836	INTRON klar
3R	19906119	3R_19906119_SNP [dm3] 3R_24080397_SNP [dm6]	G	A	3.469e^-4	0.836	INTRON 4EHP
X	9689789	X_9689789_SNP [dm3] X_9795756_SNP [dm6]	T	C	3.470e^-4	0.836	INTRON CG32698
X	18848192	X_18848192_SNP [dm3] X_18954159_SNP [dm6]	C	T	3.472e^-4	0.836	INTRON CG43759
3R	18631752	3R_18631752_SNP [dm3] 3R_22806030_SNP [dm6]	G	C	3.477e^-4	0.836	SYNONYMOUS_CODING CG7031	TF binding site mE1_TFBS_cad
3R	3887309	3R_3887309_SNP [dm3] 3R_8061587_SNP [dm6]	T	C	3.482e^-4	0.836	INTRON mAChR-B	TF binding site mE1_TFBS_inv
2L	14420200	2L_14420200_SNP [dm3] 2L_14420200_SNP [dm6]	G	C	3.494e^-4	0.836	INTERGENIC
X	4340896	X_4340896_SNP [dm3] X_4446863_SNP [dm6]	T	C	3.507e^-4	0.836	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	4206416	2L_4206416_SNP [dm3] 2L_4206416_SNP [dm6]	G	A	3.508e^-4	0.836	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1192500	3L_1192500_SNP [dm3] 3L_1192500_SNP [dm6]	G	A	3.509e^-4	0.836	INTRON Trh	TF binding site mE1_TFBS_chinmo
X	9744324	X_9744324_DEL [dm3] X_9850291_DEL [dm6]	CTGCACCACTATGCAC...	C	3.511e^-4	0.836	UTR_3_PRIME CG32698
3R	26610369	3R_26610369_SNP [dm3] 3R_30784647_SNP [dm6]	A	G	3.519e^-4	0.836	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6405739	X_6405739_SNP [dm3] X_6511706_SNP [dm6]	T	A	3.529e^-4	0.836	INTRON CG42340
2L	5493455	2L_5493455_SNP [dm3] 2L_5493455_SNP [dm6]	T	C	3.530e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23718364	3R_23718364_INS [dm3] 3R_27892642_INS [dm6]	T	TT	3.537e^-4	0.836	INTRON CG34353
2R	16173100	2R_16173100_SNP [dm3] 2R_20285595_SNP [dm6]	A	G	3.539e^-4	0.836	SPLICE_SITE_REGION CG16868 INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16173112	2R_16173112_SNP [dm3] 2R_20285607_SNP [dm6]	T	A	3.539e^-4	0.836	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20823700	3R_20823700_SNP [dm3] 3R_24997978_SNP [dm6]	T	C	3.544e^-4	0.836	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	3.545e^-4	0.836	INTRON slou
2R	15193376	2R_15193376_SNP [dm3] 2R_19305871_SNP [dm6]	T	A	3.552e^-4	0.836	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21652419	3R_21652419_SNP [dm3] 3R_25826697_SNP [dm6]	G	A	3.552e^-4	0.836	INTERGENIC
X	14666083	X_14666083_SNP [dm3] X_14772050_SNP [dm6]	G	A	3.567e^-4	0.836	INTERGENIC
2R	16173632	2R_16173632_SNP [dm3] 2R_20286127_SNP [dm6]	T	C	3.571e^-4	0.836	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	10954476	2R_10954476_SNP [dm3] 2R_15066971_SNP [dm6]	A	C	3.572e^-4	0.836	INTERGENIC
2R	10415648	2R_10415648_SNP [dm3] 2R_14528143_SNP [dm6]	G	A	3.576e^-4	0.836	INTRON ttv
3L	11464805	3L_11464805_SNP [dm3] 3L_11471705_SNP [dm6]	G	C	3.585e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_run
2L	6532387	2L_6532387_SNP [dm3] 2L_6532387_SNP [dm6]	T	C	3.586e^-4	0.836	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2999435	2L_2999435_SNP [dm3] 2L_2999435_SNP [dm6]	C	T	3.592e^-4	0.836	START_GAINED CG17265 UTR_5_PRIME CG17265 DOWNSTREAM CG3558	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens
3L	17109432	3L_17109432_SNP [dm3] 3L_17116332_SNP [dm6]	C	T	3.606e^-4	0.836	INTRON Rbp6
3L	18026863	3L_18026863_SNP [dm3] 3L_18033763_SNP [dm6]	T	C	3.613e^-4	0.836	INTRON Eip75B
3L	11624286	3L_11624286_SNP [dm3] 3L_11631186_SNP [dm6]	T	C	3.632e^-4	0.836	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3L	3780805	3L_3780805_SNP [dm3] 3L_3780805_SNP [dm6]	A	G	3.632e^-4	0.836	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16422759	3R_16422759_SNP [dm3] 3R_20597037_SNP [dm6]	G	A	3.634e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19569491	3R_19569491_SNP [dm3] 3R_23743769_SNP [dm6]	T	A	3.639e^-4	0.836	INTRON Hmgcr
2L	7457305	2L_7457305_SNP [dm3] 2L_7457305_SNP [dm6]	A	G	3.639e^-4	0.836	SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b INTRON Gr28b
X	13348932	X_13348932_SNP [dm3] X_13454899_SNP [dm6]	G	C	3.645e^-4	0.836	INTRON Neto
3R	16421999	3R_16421999_SNP [dm3] 3R_20596277_SNP [dm6]	T	A	3.648e^-4	0.836	INTRON bon	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1202142	3L_1202142_SNP [dm3] 3L_1202142_SNP [dm6]	G	A	3.655e^-4	0.836	SYNONYMOUS_CODING CG32335 INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6861869	2R_6861869_SNP [dm3] 2R_10974364_SNP [dm6]	T	A	3.661e^-4	0.836	INTERGENIC
3L	13467007	3L_13467007_INS [dm3] 3L_13473907_INS [dm6]	A	AA	3.671e^-4	0.836	INTRON CG10089
X	3962127	X_3962127_DEL [dm3] X_4068094_DEL [dm6]	AAA	A	3.674e^-4	0.836	INTERGENIC
2R	6861814	2R_6861814_SNP [dm3] 2R_10974309_SNP [dm6]	G	A	3.677e^-4	0.836	INTERGENIC
3L	10211924	3L_10211924_SNP [dm3] 3L_10218824_SNP [dm6]	C	A	3.678e^-4	0.836	NON_SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_sens
3R	26868439	3R_26868439_SNP [dm3] 3R_31042717_SNP [dm6]	T	A	3.681e^-4	0.836	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
X	18848194	X_18848194_SNP [dm3] X_18954161_SNP [dm6]	C	T	3.683e^-4	0.836	INTRON CG43759
3R	25260091	3R_25260091_SNP [dm3] 3R_29434369_SNP [dm6]	A	T	3.697e^-4	0.836	INTRON Ptp99A
2L	4375075	2L_4375075_SNP [dm3] 2L_4375075_SNP [dm6]	G	A	3.698e^-4	0.836	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14420162	2L_14420162_INS [dm3] 2L_14420162_INS [dm6]	C	CCAGGTAATGC...	3.706e^-4	0.836	INTERGENIC
3R	26037683	3R_26037683_SNP [dm3] 3R_30211961_SNP [dm6]	C	G	3.710e^-4	0.836	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
3L	13460499	3L_13460499_SNP [dm3] 3L_13467399_SNP [dm6]	G	A	3.710e^-4	0.836	SYNONYMOUS_CODING CG10089 DOWNSTREAM CG10089	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6982925	3L_6982925_SNP [dm3] 3L_6989825_SNP [dm6]	C	T	3.712e^-4	0.836	UPSTREAM bin INTERGENIC
X	12628201	X_12628201_SNP [dm3] X_12734168_SNP [dm6]	C	A	3.713e^-4	0.836	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2136920	X_2136920_SNP [dm3] X_2242887_SNP [dm6]	G	A	3.720e^-4	0.836	SYNONYMOUS_CODING fs_1_K10 UPSTREAM kz	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	13422017	3R_13422017_SNP [dm3] 3R_17596295_SNP [dm6]	T	A	3.723e^-4	0.836	UPSTREAM CG7606 DOWNSTREAM Sgs5 INTERGENIC
3R	10703451	3R_10703451_SNP [dm3] 3R_14877729_SNP [dm6]	A	C	3.728e^-4	0.836	INTERGENIC
3L	3425535	3L_3425535_SNP [dm3] 3L_3425535_SNP [dm6]	T	G	3.734e^-4	0.836	UPSTREAM sty INTERGENIC
3L	10218450	3L_10218450_SNP [dm3] 3L_10225350_SNP [dm6]	A	G	3.747e^-4	0.836	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	22617465	2L_22617465_SNP [dm3] 2L_22724733_SNP [dm6]	A	C	3.750e^-4	0.836	INTRON CG40006
2R	15251659	2R_15251659_DEL [dm3] 2R_19364154_DEL [dm6]	CC	C	3.756e^-4	0.836	INTRON CG10051	TF binding site mE1_TFBS_cad
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	3.756e^-4	0.836	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
X	15317694	X_15317694_SNP [dm3] X_15423661_SNP [dm6]	C	T	3.759e^-4	0.836	INTRON Cngl
3R	24891328	3R_24891328_SNP [dm3] 3R_29065606_SNP [dm6]	G	A	3.760e^-4	0.836	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8909550	3L_8909550_SNP [dm3] 3L_8916450_SNP [dm6]	A	G	3.768e^-4	0.836	DOWNSTREAM CR43970 INTRON Tsp66E
3L	1903089	3L_1903089_SNP [dm3] 3L_1903089_SNP [dm6]	C	T	3.774e^-4	0.836	INTRON CG1887	TF binding site mE1_TFBS_inv
2R	15765552	2R_15765552_SNP [dm3] 2R_19878047_SNP [dm6]	C	A	3.781e^-4	0.836	DOWNSTREAM CG13872 INTERGENIC
2L	14420177	2L_14420177_SNP [dm3] 2L_14420177_SNP [dm6]	T	C	3.783e^-4	0.836	INTERGENIC
3L	3338260	3L_3338260_SNP [dm3] 3L_3338260_SNP [dm6]	A	T	3.791e^-4	0.836	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13199864	3R_13199864_SNP [dm3] 3R_17374142_SNP [dm6]	A	G	3.794e^-4	0.836	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16144700	2R_16144700_SNP [dm3] 2R_20257195_SNP [dm6]	C	T	3.810e^-4	0.836	UPSTREAM Hsl INTRON Ate1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12378708	3R_12378708_SNP [dm3] 3R_16552986_SNP [dm6]	T	C	3.813e^-4	0.836	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	21062163	2R_21062163_SNP [dm3] 2R_25174640_SNP [dm6]	G	A	3.817e^-4	0.836	UPSTREAM PebII DOWNSTREAM Peb INTERGENIC
3L	18326689	3L_18326689_SNP [dm3] 3L_18333589_SNP [dm6]	T	A	3.820e^-4	0.836	INTERGENIC
2L	1036956	2L_1036956_SNP [dm3] 2L_1036956_SNP [dm6]	T	G	3.825e^-4	0.836	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	11624731	3L_11624731_INS [dm3] 3L_11631631_INS [dm6]	T	TTCT	3.827e^-4	0.836	DOWNSTREAM CG18815 INTRON CG32091
X	10122693	X_10122693_SNP [dm3] X_10228660_SNP [dm6]	C	T	3.832e^-4	0.836	INTRON CG34408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	14589175	X_14589175_SNP [dm3] X_14695142_SNP [dm6]	T	G	3.837e^-4	0.836	INTRON NetB
3L	16823927	3L_16823927_DEL [dm3] 3L_16830827_DEL [dm6]	TAAACTTTAAAGCCTTGTAA...	G	3.843e^-4	0.836	INTERGENIC
2L	743826	2L_743826_SNP [dm3] 2L_743826_SNP [dm6]	T	G	3.849e^-4	0.836	INTRON Eaat2
2R	16173317	2R_16173317_SNP [dm3] 2R_20285812_SNP [dm6]	C	G	3.853e^-4	0.836	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18129562	3L_18129562_SNP [dm3] 3L_18136462_SNP [dm6]	A	T	3.863e^-4	0.836	UPSTREAM CR44669 INTERGENIC
2R	16173257	2R_16173257_SNP [dm3] 2R_20285752_SNP [dm6]	A	G	3.865e^-4	0.836	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7000831	3R_7000831_SNP [dm3] 3R_11175109_SNP [dm6]	T	C	3.865e^-4	0.836	UPSTREAM Ugt86Dh INTRON Ugt86Dj
3R	21125762	3R_21125762_SNP [dm3] 3R_25300040_SNP [dm6]	C	G	3.865e^-4	0.836	UPSTREAM CG31288 & 1 other INTERGENIC
3L	3581268	3L_3581268_SNP [dm3] 3L_3581268_SNP [dm6]	C	T	3.866e^-4	0.836	INTRON Eip63E
3L	3581269	3L_3581269_SNP [dm3] 3L_3581269_SNP [dm6]	T	C	3.866e^-4	0.836	INTRON Eip63E
3L	5645530	3L_5645530_SNP [dm3] 3L_5652430_SNP [dm6]	T	C	3.872e^-4	0.836	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15513812	3R_15513812_SNP [dm3] 3R_19688090_SNP [dm6]	T	C	3.880e^-4	0.836	INTRON Naam
3R	8071346	3R_8071346_SNP [dm3] 3R_12245624_SNP [dm6]	C	T	3.881e^-4	0.836	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23497586	3R_23497586_SNP [dm3] 3R_27671864_SNP [dm6]	T	C	3.889e^-4	0.836	INTRON unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4027432	2R_4027432_SNP [dm3] 2R_8139927_SNP [dm6]	T	A	3.890e^-4	0.836	INTRON Lpin
3L	4759624	3L_4759624_SNP [dm3] 3L_4759624_SNP [dm6]	A	G	3.899e^-4	0.836	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10954378	2R_10954378_SNP [dm3] 2R_15066873_SNP [dm6]	G	A	3.908e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13181768	2R_13181768_SNP [dm3] 2R_17294263_SNP [dm6]	A	G	3.915e^-4	0.836	INTRON mbl
2L	16198269	2L_16198269_SNP [dm3] 2L_16198269_SNP [dm6]	C	A	3.919e^-4	0.836	INTERGENIC
2L	5546015	2L_5546015_SNP [dm3] 2L_5546015_SNP [dm6]	A	C	3.924e^-4	0.836	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	6075676	3L_6075676_SNP [dm3] 3L_6082576_SNP [dm6]	T	C	3.927e^-4	0.836	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6430581	3L_6430581_SNP [dm3] 3L_6437481_SNP [dm6]	A	T	3.927e^-4	0.836	INTRON CG42747
2L	12565988	2L_12565988_SNP [dm3] 2L_12565988_SNP [dm6]	C	T	3.928e^-4	0.836	INTERGENIC
3L	19994007	3L_19994007_SNP [dm3] 3L_20000907_SNP [dm6]	T	A	3.932e^-4	0.836	UPSTREAM Tom20 & 1 other INTRON Tom20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	10818821	2L_10818821_SNP [dm3] 2L_10818821_SNP [dm6]	A	T	3.935e^-4	0.836	UPSTREAM CG6508 INTRON Nos
3L	10965871	3L_10965871_SNP [dm3] 3L_10972771_SNP [dm6]	A	T	3.935e^-4	0.836	INTRON CG14147
2L	7457812	2L_7457812_SNP [dm3] 2L_7457812_SNP [dm6]	G	A	3.939e^-4	0.836	UPSTREAM Gr28b INTRON Gr28b
2L	3519311	2L_3519311_SNP [dm3] 2L_3519311_SNP [dm6]	G	A	3.941e^-4	0.836	SYNONYMOUS_CODING CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25152192	3R_25152192_SNP [dm3] 3R_29326470_SNP [dm6]	T	C	3.950e^-4	0.836	INTERGENIC
2R	6861837	2R_6861837_SNP [dm3] 2R_10974332_SNP [dm6]	A	G	3.951e^-4	0.836	INTERGENIC
X	10553946	X_10553946_SNP [dm3] X_10659913_SNP [dm6]	A	G	3.958e^-4	0.836	NON_SYNONYMOUS_CODING CG2111 INTRON X11Lbeta	TF binding site mE1_TFBS_chinmo
X	17663829	X_17663829_SNP [dm3] X_17769796_SNP [dm6]	C	A	3.968e^-4	0.836	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
X	12624953	X_12624953_SNP [dm3] X_12730920_SNP [dm6]	A	T	3.969e^-4	0.836	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20375688	3R_20375688_SNP [dm3] 3R_24549966_SNP [dm6]	C	A	3.971e^-4	0.836	INTRON Esyt2
X	21281721	X_21281721_DEL [dm3] X_21410694_DEL [dm6]	AAACCTTAAACGCTTTGCTT...	A	3.972e^-4	0.836	UPSTREAM CR45003 INTERGENIC
2R	12392094	2R_12392094_INS [dm3] 2R_16504589_INS [dm6]	C	CACCCCCCA	3.977e^-4	0.836	INTRON Sema-2a
3L	9377403	3L_9377403_SNP [dm3] 3L_9384303_SNP [dm6]	C	A	3.989e^-4	0.836	NON_SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10214427	2R_10214427_SNP [dm3] 2R_14326922_SNP [dm6]	T	C	3.992e^-4	0.836	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
2L	10032297	2L_10032297_SNP [dm3] 2L_10032297_SNP [dm6]	C	G	3.993e^-4	0.836	UPSTREAM obst-B INTERGENIC
3L	17403615	3L_17403615_DEL [dm3] 3L_17410515_DEL [dm6]	AA	A	3.998e^-4	0.836	INTRON blot
3L	16622985	3L_16622985_DEL [dm3] 3L_16629885_DEL [dm6]	TCT	T	4.006e^-4	0.836	INTRON Abl
2L	7187412	2L_7187412_SNP [dm3] 2L_7187412_SNP [dm6]	C	T	4.016e^-4	0.836	SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
3R	26151267	3R_26151267_SNP [dm3] 3R_30325545_SNP [dm6]	A	G	4.018e^-4	0.836	INTRON hdc	TF binding site mE1_TFBS_chinmo
2R	16173609	2R_16173609_SNP [dm3] 2R_20286104_SNP [dm6]	G	C	4.020e^-4	0.836	NON_SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	15251333	2R_15251333_SNP [dm3] 2R_19363828_SNP [dm6]	G	C	4.022e^-4	0.836	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2R	13767692	2R_13767692_SNP [dm3] 2R_17880187_SNP [dm6]	C	T	4.024e^-4	0.836	UPSTREAM CG30325 DOWNSTREAM CG30110 INTRON Elk
2L	738453	2L_738453_SNP [dm3] 2L_738453_SNP [dm6]	T	A	4.025e^-4	0.836	INTRON Eaat2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16440906	3L_16440906_SNP [dm3] 3L_16447806_SNP [dm6]	C	T	4.033e^-4	0.836	INTRON CG33158 & 1 other
3L	18642779	3L_18642779_INS [dm3] 3L_18649679_INS [dm6]	C	CA	4.037e^-4	0.836	INTRON MYPT-75D
2R	14451903	2R_14451903_SNP [dm3] 2R_18564398_SNP [dm6]	A	C	4.048e^-4	0.836	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1004156	3L_1004156_SNP [dm3] 3L_1004156_SNP [dm6]	T	C	4.051e^-4	0.836	INTRON trio
3L	13843511	3L_13843511_SNP [dm3] 3L_13850411_SNP [dm6]	T	G	4.061e^-4	0.836	SYNONYMOUS_CODING Hml
3R	3960510	3R_3960510_SNP [dm3] 3R_8134788_SNP [dm6]	A	T	4.064e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7050312	3L_7050312_SNP [dm3] 3L_7057212_SNP [dm6]	T	C	4.069e^-4	0.836	INTERGENIC
3R	19906134	3R_19906134_SNP [dm3] 3R_24080412_SNP [dm6]	G	A	4.070e^-4	0.836	INTRON 4EHP
2L	10035357	2L_10035357_SNP [dm3] 2L_10035357_SNP [dm6]	C	G	4.075e^-4	0.836	INTRON obst-B
2R	20690429	2R_20690429_SNP [dm3] 2R_24802906_SNP [dm6]	T	C	4.080e^-4	0.836	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	6290715	2R_6290715_DEL [dm3] 2R_10403210_DEL [dm6]	TG	T	4.084e^-4	0.836	INTRON CG42732
2L	11951357	2L_11951357_SNP [dm3] 2L_11951357_SNP [dm6]	G	A	4.084e^-4	0.836	DOWNSTREAM CR43314 INTERGENIC
3L	22469585	3L_22469585_SNP [dm3] 3L_22476485_SNP [dm6]	T	C	4.088e^-4	0.836	DOWNSTREAM CG11425 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10826700	2R_10826700_SNP [dm3] 2R_14939195_SNP [dm6]	T	C	4.089e^-4	0.836	UTR_3_PRIME Lap1
2R	10826701	2R_10826701_SNP [dm3] 2R_14939196_SNP [dm6]	T	C	4.089e^-4	0.836	UTR_3_PRIME Lap1
2R	10546873	2R_10546873_SNP [dm3] 2R_14659368_SNP [dm6]	T	A	4.095e^-4	0.836	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
X	8374903	X_8374903_DEL [dm3] X_8480870_DEL [dm6]	ATAATAAC	A	4.097e^-4	0.836	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	14107953	2L_14107953_SNP [dm3] 2L_14107953_SNP [dm6]	A	G	4.100e^-4	0.836	DOWNSTREAM CG15293 & 1 other INTERGENIC
3L	437718	3L_437718_SNP [dm3] 3L_437718_SNP [dm6]	A	C	4.105e^-4	0.836	UTR_5_PRIME klar INTRON klar
2L	905370	2L_905370_SNP [dm3] 2L_905370_SNP [dm6]	G	A	4.112e^-4	0.836	INTERGENIC
2L	11948582	2L_11948582_SNP [dm3] 2L_11948582_SNP [dm6]	C	A	4.117e^-4	0.836	UTR_3_PRIME CG16964	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9627789	2R_9627789_SNP [dm3] 2R_13740284_SNP [dm6]	G	C	4.118e^-4	0.836	INTRON fas
3L	22499989	3L_22499989_SNP [dm3] 3L_22506889_SNP [dm6]	A	G	4.118e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23546655	3R_23546655_SNP [dm3] 3R_27720933_SNP [dm6]	G	A	4.127e^-4	0.836	INTERGENIC
2L	85608	2L_85608_SNP [dm3] 2L_85608_SNP [dm6]	A	G	4.129e^-4	0.836	INTRON net	TF binding site mE1_TFBS_cad
2L	13726856	2L_13726856_SNP [dm3] 2L_13726856_SNP [dm6]	A	C	4.142e^-4	0.836	INTERGENIC
2R	15193070	2R_15193070_SNP [dm3] 2R_19305565_SNP [dm6]	C	G	4.150e^-4	0.836	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	18630107	3L_18630107_SNP [dm3] 3L_18637007_SNP [dm6]	G	A	4.151e^-4	0.836	INTRON MYPT-75D
3R	16654088	3R_16654088_SNP [dm3] 3R_20828366_SNP [dm6]	C	A	4.156e^-4	0.836	DOWNSTREAM CR44047 INTRON AdSS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3791627	3L_3791627_SNP [dm3] 3L_3791627_SNP [dm6]	A	G	4.159e^-4	0.836	DOWNSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_HSA
2L	743233	2L_743233_SNP [dm3] 2L_743233_SNP [dm6]	T	G	4.162e^-4	0.836	INTRON Eaat2
X	13137630	X_13137630_SNP [dm3] X_13243597_SNP [dm6]	G	A	4.169e^-4	0.836	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17093022	3L_17093022_SNP [dm3] 3L_17099922_SNP [dm6]	G	C	4.171e^-4	0.836	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3418890	3L_3418890_SNP [dm3] 3L_3418890_SNP [dm6]	C	G	4.172e^-4	0.836	UPSTREAM sty INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16892362	X_16892362_SNP [dm3] X_16998329_SNP [dm6]	A	G	4.175e^-4	0.836	INTRON CG45002
2L	17402102	2L_17402102_SNP [dm3] 2L_17402102_SNP [dm6]	A	T	4.177e^-4	0.836	DOWNSTREAM CLIP-190 INTRON CLIP-190
2L	18586521	2L_18586521_SNP [dm3] 2L_18586521_SNP [dm6]	C	T	4.178e^-4	0.836	INTRON Pde11
X	12216021	X_12216021_SNP [dm3] X_12321988_SNP [dm6]	G	A	4.181e^-4	0.836	NON_SYNONYMOUS_CODING Ten-a	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7854176	2L_7854176_INS [dm3] 2L_7854176_INS [dm6]	T	TATT	4.182e^-4	0.836	INTRON CG14535
X	18427514	X_18427514_SNP [dm3] X_18533481_SNP [dm6]	T	C	4.184e^-4	0.836	INTRON Bx	TF binding site BDTNP1_TFBS_dl
3R	17813456	3R_17813456_SNP [dm3] 3R_21987734_SNP [dm6]	G	T	4.185e^-4	0.836	INTRON Eip93F
3L	18891220	3L_18891220_SNP [dm3] 3L_18898120_SNP [dm6]	G	A	4.194e^-4	0.836	UPSTREAM RpL26 INTRON CG3902
3L	14075607	3L_14075607_SNP [dm3] 3L_14082507_SNP [dm6]	C	T	4.200e^-4	0.836	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15721427	3L_15721427_SNP [dm3] 3L_15728327_SNP [dm6]	A	G	4.200e^-4	0.836	UTR_5_PRIME comm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	12695822	3L_12695822_SNP [dm3] 3L_12702722_SNP [dm6]	T	A	4.204e^-4	0.836	INTRON mirr	TF binding site mE1_TFBS_HSA
3R	22136437	3R_22136437_SNP [dm3] 3R_26310715_SNP [dm6]	G	A	4.205e^-4	0.836	INTERGENIC
3L	1738758	3L_1738758_SNP [dm3] 3L_1738758_SNP [dm6]	C	T	4.207e^-4	0.836	UPSTREAM CG18173 & 1 other INTRON Gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	26216644	3R_26216644_DEL [dm3] 3R_30390922_DEL [dm6]	GTTG	G	4.214e^-4	0.836	DOWNSTREAM Fer2LCH INTERGENIC
3R	21441702	3R_21441702_SNP [dm3] 3R_25615980_SNP [dm6]	T	C	4.214e^-4	0.836	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16235091	2L_16235091_SNP [dm3] 2L_16235091_SNP [dm6]	G	A	4.219e^-4	0.836	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5259726	2L_5259726_INS [dm3] 2L_5259726_INS [dm6]	A	AA	4.221e^-4	0.836	INTRON tkv EXON CR44744	TF binding site mE1_TFBS_cad
2R	13761095	2R_13761095_DEL [dm3] 2R_17873590_DEL [dm6]	TGTAT	T	4.222e^-4	0.836	UPSTREAM Elk INTERGENIC
2R	15193067	2R_15193067_SNP [dm3] 2R_19305562_SNP [dm6]	G	C	4.225e^-4	0.836	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3R	22891654	3R_22891654_SNP [dm3] 3R_27065932_SNP [dm6]	T	C	4.230e^-4	0.836	SYNONYMOUS_CODING spz DOWNSTREAM CG43935	TF binding site mE1_TFBS_inv
3R	26151252	3R_26151252_SNP [dm3] 3R_30325530_SNP [dm6]	A	T	4.230e^-4	0.836	INTRON hdc	TF binding site mE1_TFBS_chinmo
3R	19142965	3R_19142965_SNP [dm3] 3R_23317243_SNP [dm6]	A	G	4.239e^-4	0.836	INTRON pnt
3R	2854636	3R_2854636_SNP [dm3] 3R_7028914_SNP [dm6]	A	G	4.247e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	3507663	3R_3507663_SNP [dm3] 3R_7681941_SNP [dm6]	G	A	4.248e^-4	0.836	INTRON Nlg1
3R	10372475	3R_10372475_SNP [dm3] 3R_14546753_SNP [dm6]	A	T	4.249e^-4	0.836	INTRON Pde6
3L	21936224	3L_21936224_SNP [dm3] 3L_21943124_SNP [dm6]	C	G	4.251e^-4	0.836	INTRON CG14562
X	13128058	X_13128058_SNP [dm3] X_13234025_SNP [dm6]	T	G	4.251e^-4	0.836	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26610318	3R_26610318_SNP [dm3] 3R_30784596_SNP [dm6]	T	G	4.261e^-4	0.836	NON_SYNONYMOUS_CODING zfh1 UPSTREAM CR45189	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17986310	2R_17986310_SNP [dm3] 2R_22098805_SNP [dm6]	A	T	4.263e^-4	0.836	INTRON CG11073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3066081	X_3066081_SNP [dm3] X_3172048_SNP [dm6]	G	A	4.271e^-4	0.836	UTR_3_PRIME N DOWNSTREAM CG18508 & 1 other
2L	9657121	2L_9657121_SNP [dm3] 2L_9657121_SNP [dm6]	T	C	4.274e^-4	0.836	SYNONYMOUS_CODING CG33299
3L	12278230	3L_12278230_SNP [dm3] 3L_12285130_SNP [dm6]	A	T	4.278e^-4	0.836	INTERGENIC
3R	22355125	3R_22355125_SNP [dm3] 3R_26529403_SNP [dm6]	A	T	4.292e^-4	0.836	INTRON plum
3L	4864280	3L_4864280_SNP [dm3] 3L_4864280_SNP [dm6]	G	A	4.298e^-4	0.836	NON_SYNONYMOUS_CODING CG17150 INTRON CG17150
3R	3875782	3R_3875782_SNP [dm3] 3R_8050060_SNP [dm6]	A	G	4.299e^-4	0.836	DOWNSTREAM CG43618 & 1 other INTRON CG43060
X	21874470	X_21874470_SNP [dm3] X_22472634_SNP [dm6]	T	C	4.299e^-4	0.836	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6861825	2R_6861825_SNP [dm3] 2R_10974320_SNP [dm6]	C	T	4.302e^-4	0.836	INTERGENIC
2R	4023716	2R_4023716_SNP [dm3] 2R_8136211_SNP [dm6]	C	T	4.303e^-4	0.836	UPSTREAM Obp44a DOWNSTREAM Lpin INTERGENIC
3L	9545814	3L_9545814_SNP [dm3] 3L_9552714_SNP [dm6]	T	A	4.303e^-4	0.836	INTRON CG42673
3R	14354114	3R_14354114_SNP [dm3] 3R_18528392_SNP [dm6]	C	G	4.305e^-4	0.836	INTRON fru
3L	11125903	3L_11125903_SNP [dm3] 3L_11132803_SNP [dm6]	G	T	4.306e^-4	0.836	NON_SYNONYMOUS_CODING CG42575 UPSTREAM CG32074	TF binding site mE1_TFBS_cad
3L	567556	3L_567556_SNP [dm3] 3L_567556_SNP [dm6]	G	A	4.313e^-4	0.836	INTRON hipk
3L	13966638	3L_13966638_SNP [dm3] 3L_13973538_SNP [dm6]	G	A	4.316e^-4	0.836	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15427571	X_15427571_SNP [dm3] X_15533538_SNP [dm6]	T	C	4.319e^-4	0.836	INTRON Ac13E
3L	5684049	3L_5684049_SNP [dm3] 3L_5690949_SNP [dm6]	C	A	4.319e^-4	0.836	UPSTREAM sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13843280	3L_13843280_SNP [dm3] 3L_13850180_SNP [dm6]	C	T	4.319e^-4	0.836	SYNONYMOUS_CODING Hml
3L	21204342	3L_21204342_SNP [dm3] 3L_21211242_SNP [dm6]	A	C	4.320e^-4	0.836	INTRON CG10508
3L	12021700	3L_12021700_SNP [dm3] 3L_12028600_SNP [dm6]	C	T	4.320e^-4	0.836	DOWNSTREAM CR43994 INTRON rols
2L	14447421	2L_14447421_SNP [dm3] 2L_14447421_SNP [dm6]	G	A	4.338e^-4	0.836	DOWNSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26665555	3R_26665555_SNP [dm3] 3R_30839833_SNP [dm6]	T	G	4.344e^-4	0.836	NON_SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
3L	6075693	3L_6075693_SNP [dm3] 3L_6082593_SNP [dm6]	G	A	4.351e^-4	0.836	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6618333	2L_6618333_SNP [dm3] 2L_6618333_SNP [dm6]	C	T	4.358e^-4	0.836	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
X	9179430	X_9179430_SNP [dm3] X_9285397_SNP [dm6]	G	A	4.365e^-4	0.836	INTRON lz	TF binding site BDTNP1_TFBS_dl
2L	967934	2L_967934_SNP [dm3] 2L_967934_SNP [dm6]	C	A	4.365e^-4	0.836	INTERGENIC
2R	12238444	2R_12238444_SNP [dm3] 2R_16350939_SNP [dm6]	C	T	4.370e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15892213	3R_15892213_SNP [dm3] 3R_20066491_SNP [dm6]	T	A	4.375e^-4	0.836	INTERGENIC
X	18842182	X_18842182_SNP [dm3] X_18948149_SNP [dm6]	G	T	4.393e^-4	0.836	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	24659380	3R_24659380_SNP [dm3] 3R_28833658_SNP [dm6]	C	A	4.408e^-4	0.836	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	10154377	3R_10154377_SNP [dm3] 3R_14328655_SNP [dm6]	T	C	4.412e^-4	0.836	SYNONYMOUS_CODING spn-B DOWNSTREAM CG3321 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13639188	2R_13639188_SNP [dm3] 2R_17751683_SNP [dm6]	A	G	4.417e^-4	0.836	INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7050514	3L_7050514_SNP [dm3] 3L_7057414_SNP [dm6]	G	C	4.428e^-4	0.836	INTERGENIC
2R	3419720	2R_3419720_SNP [dm3] 2R_7532215_SNP [dm6]	G	T	4.431e^-4	0.836	DOWNSTREAM CR44209 INTRON Drat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14419427	2L_14419427_SNP [dm3] 2L_14419427_SNP [dm6]	A	T	4.432e^-4	0.836	INTERGENIC
3R	21581339	3R_21581339_SNP [dm3] 3R_25755617_SNP [dm6]	C	T	4.437e^-4	0.836	INTRON LpR1
2L	3000121	2L_3000121_INS [dm3] 2L_3000121_INS [dm6]	A	AGTTATA	4.444e^-4	0.836	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25846963	3R_25846963_SNP [dm3] 3R_30021241_SNP [dm6]	A	G	4.449e^-4	0.836	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	9372225	3L_9372225_SNP [dm3] 3L_9379125_SNP [dm6]	G	A	4.458e^-4	0.836	SYNONYMOUS_CODING Hsp67Ba INTRON CR43481 EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7023540	3L_7023540_SNP [dm3] 3L_7030440_SNP [dm6]	T	A	4.466e^-4	0.836	INTRON Mp
X	12876152	X_12876152_SNP [dm3] X_12982119_SNP [dm6]	T	G	4.466e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10818477	2R_10818477_SNP [dm3] 2R_14930972_SNP [dm6]	T	A	4.467e^-4	0.836	INTRON CG10253
2R	7045498	2R_7045498_SNP [dm3] 2R_11157993_SNP [dm6]	T	A	4.467e^-4	0.836	INTRON CG13229	transposable element FlyBase
2R	13624486	2R_13624486_SNP [dm3] 2R_17736981_SNP [dm6]	G	A	4.471e^-4	0.836	SYNONYMOUS_CODING CG6406 DOWNSTREAM CG6401	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	22898297	3R_22898297_SNP [dm3] 3R_27072575_SNP [dm6]	T	C	4.476e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9496639	3L_9496639_SNP [dm3] 3L_9503539_SNP [dm6]	A	G	4.481e^-4	0.836	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15100777	2R_15100777_SNP [dm3] 2R_19213272_SNP [dm6]	T	C	4.484e^-4	0.836	INTRON hppy
X	18848200	X_18848200_SNP [dm3] X_18954167_SNP [dm6]	G	C	4.484e^-4	0.836	INTRON CG43759
2L	10820405	2L_10820405_SNP [dm3] 2L_10820405_SNP [dm6]	T	C	4.485e^-4	0.836	UTR_3_PRIME CG6508 UPSTREAM CG17134 INTRON Nos
3R	13416131	3R_13416131_SNP [dm3] 3R_17590409_SNP [dm6]	G	A	4.498e^-4	0.836	INTERGENIC
3R	23640625	3R_23640625_SNP [dm3] 3R_27814903_SNP [dm6]	A	G	4.498e^-4	0.836	INTRON CG34353
2L	4297033	2L_4297033_SNP [dm3] 2L_4297033_SNP [dm6]	G	A	4.503e^-4	0.836	INTRON tutl
2L	22198283	2L_22198283_SNP [dm3] 2L_22198283_SNP [dm6]	G	A	4.514e^-4	0.836	UPSTREAM Ir40a INTRON Ir40a
2R	15511022	2R_15511022_SNP [dm3] 2R_19623517_SNP [dm6]	C	A	4.522e^-4	0.836	INTRON sm
3L	5436175	3L_5436175_SNP [dm3] 3L_5443075_SNP [dm6]	G	A	4.523e^-4	0.836	DOWNSTREAM CG34391 INTERGENIC
3R	25853941	3R_25853941_SNP [dm3] 3R_30028219_SNP [dm6]	A	G	4.524e^-4	0.836	INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16454537	2R_16454537_SNP [dm3] 2R_20567032_SNP [dm6]	T	C	4.545e^-4	0.836	INTRON qsm
2R	9253867	2R_9253867_SNP [dm3] 2R_13366362_SNP [dm6]	G	A	4.548e^-4	0.836	INTERGENIC
2R	9253939	2R_9253939_SNP [dm3] 2R_13366434_SNP [dm6]	T	A	4.548e^-4	0.836	INTERGENIC
2L	2999429	2L_2999429_SNP [dm3] 2L_2999429_SNP [dm6]	T	A	4.553e^-4	0.836	UTR_5_PRIME CG17265 DOWNSTREAM CG3558	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_sens
2R	9253907	2R_9253907_SNP [dm3] 2R_13366402_SNP [dm6]	T	A	4.554e^-4	0.836	INTERGENIC
3R	23036778	3R_23036778_SNP [dm3] 3R_27211056_SNP [dm6]	T	G	4.555e^-4	0.836	INTERGENIC
3R	9432479	3R_9432479_DEL [dm3] 3R_13606757_DEL [dm6]	AATAATTTATGTTTGAAACT...	A	4.556e^-4	0.836	DOWNSTREAM CG9759 INTERGENIC
3L	12695072	3L_12695072_SNP [dm3] 3L_12701972_SNP [dm6]	A	G	4.563e^-4	0.836	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12091240	3L_12091240_SNP [dm3] 3L_12098140_SNP [dm6]	T	C	4.565e^-4	0.836	INTERGENIC
3L	6075692	3L_6075692_SNP [dm3] 3L_6082592_SNP [dm6]	C	A	4.567e^-4	0.836	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6283076	2L_6283076_SNP [dm3] 2L_6283076_SNP [dm6]	C	G	4.570e^-4	0.836	INTRON Ddr
2L	10448249	2L_10448249_SNP [dm3] 2L_10448249_SNP [dm6]	A	C	4.571e^-4	0.836	INTRON loh

By genomic position
Variant impact
Gene name

cv_SleepLength_Night phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results