DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.382e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2323 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2438965	X_2438965_SNP [dm3] X_2544932_SNP [dm6]	G	T	3.888e^-8	0.073	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
3L	9276637	3L_9276637_SNP [dm3] 3L_9283537_SNP [dm6]	C	T	3.421e^-7	0.244	INTRON GluRIB
2R	18594505	2R_18594505_SNP [dm3] 2R_22707000_SNP [dm6]	A	T	3.900e^-7	0.244	NON_SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
3L	10731932	3L_10731932_SNP [dm3] 3L_10738832_SNP [dm6]	T	A	5.220e^-7	0.245	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2438968	X_2438968_SNP [dm3] X_2544935_SNP [dm6]	T	C	7.437e^-7	0.279	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
3L	3694588	3L_3694588_SNP [dm3] 3L_3694588_SNP [dm6]	T	G	9.597e^-7	0.3	UPSTREAM CR43485 INTERGENIC
3L	6277117	3L_6277117_SNP [dm3] 3L_6284017_SNP [dm6]	G	T	1.893e^-6	0.447	INTERGENIC
X	2438967	X_2438967_SNP [dm3] X_2544934_SNP [dm6]	C	G	1.907e^-6	0.447	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
2R	9024221	2R_9024221_SNP [dm3] 2R_13136716_SNP [dm6]	A	G	2.166e^-6	0.451	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3L	6160501	3L_6160501_SNP [dm3] 3L_6167401_SNP [dm6]	C	G	2.848e^-6	0.534	UTR_3_PRIME CG10289
3L	9276382	3L_9276382_DEL [dm3] 3L_9283282_DEL [dm6]	AT	A	3.848e^-6	0.637	INTRON GluRIB
X	1683198	X_1683198_SNP [dm3] X_1789165_SNP [dm6]	C	T	4.214e^-6	0.637	UPSTREAM CG32806 & 1 other INTRON CG42666
3L	3694218	3L_3694218_SNP [dm3] 3L_3694218_SNP [dm6]	C	T	4.416e^-6	0.637	EXON CR43485
3R	6978641	3R_6978641_SNP [dm3] 3R_11152919_SNP [dm6]	C	A	5.203e^-6	0.697	NON_SYNONYMOUS_CODING Ugt86Di
2L	15217304	2L_15217304_SNP [dm3] 2L_15217304_SNP [dm6]	G	T	5.997e^-6	0.715	INTERGENIC
3R	6980342	3R_6980342_SNP [dm3] 3R_11154620_SNP [dm6]	C	T	6.737e^-6	0.715	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3L	7249866	3L_7249866_INS [dm3] 3L_7256766_INS [dm6]	T	TTCT	6.983e^-6	0.715	INTRON CG14830
3L	11526452	3L_11526452_SNP [dm3] 3L_11533352_SNP [dm6]	A	G	7.161e^-6	0.715	INTRON Mob2
3L	6160496	3L_6160496_SNP [dm3] 3L_6167396_SNP [dm6]	G	A	7.246e^-6	0.715	UTR_3_PRIME CG10289
3L	8832878	3L_8832878_SNP [dm3] 3L_8839778_SNP [dm6]	A	T	8.630e^-6	0.722	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6235066	3R_6235066_SNP [dm3] 3R_10409344_SNP [dm6]	G	T	8.648e^-6	0.722	SYNONYMOUS_CODING Irp-1B DOWNSTREAM mir-318	TF binding site mE1_TFBS_chinmo
3L	9052955	3L_9052955_SNP [dm3] 3L_9059855_SNP [dm6]	C	T	8.725e^-6	0.722	INTRON Argk
3R	6980322	3R_6980322_DEL [dm3] 3R_11154600_DEL [dm6]	GAAATTAAG	G	8.849e^-6	0.722	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3L	8797466	3L_8797466_SNP [dm3] 3L_8804366_SNP [dm6]	G	T	1.161e^-5	0.733	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
4	253863	4_253863_SNP [dm3] 4_233237_SNP [dm6]	G	A	1.270e^-5	0.733	INTRON CG1674
2R	13508942	2R_13508942_SNP [dm3] 2R_17621437_SNP [dm6]	G	T	1.312e^-5	0.733	INTRON CG10936
3R	6978096	3R_6978096_SNP [dm3] 3R_11152374_SNP [dm6]	A	G	1.323e^-5	0.733	SYNONYMOUS_CODING Ugt86Di
X	1682389	X_1682389_SNP [dm3] X_1788356_SNP [dm6]	C	T	1.347e^-5	0.733	DOWNSTREAM mir-981 & 1 other INTRON CG42666
X	1684349	X_1684349_SNP [dm3] X_1790316_SNP [dm6]	A	C	1.350e^-5	0.733	NON_SYNONYMOUS_CODING CG32806 INTRON CG42666
X	2365363	X_2365363_SNP [dm3] X_2471330_SNP [dm6]	A	C	1.376e^-5	0.733	INTRON trol
3L	8964159	3L_8964159_SNP [dm3] 3L_8971059_SNP [dm6]	G	T	1.381e^-5	0.733	DOWNSTREAM pix INTRON CG5026
3L	1294433	3L_1294433_SNP [dm3] 3L_1294433_SNP [dm6]	T	C	1.392e^-5	0.733	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
3R	23726020	3R_23726020_SNP [dm3] 3R_27900298_SNP [dm6]	G	A	1.421e^-5	0.733	INTRON CG34353
3L	5932222	3L_5932222_SNP [dm3] 3L_5939122_SNP [dm6]	G	A	1.425e^-5	0.733	INTRON CG33993
X	16668094	X_16668094_INS [dm3] X_16774061_INS [dm6]	T	TT	1.442e^-5	0.733	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16615175	X_16615175_SNP [dm3] X_16721142_SNP [dm6]	T	A	1.472e^-5	0.733	UPSTREAM CG32572 INTRON CG34325
X	1669183	X_1669183_DEL [dm3] X_1775150_DEL [dm6]	TACG	T	1.631e^-5	0.733	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	5332035	2R_5332035_SNP [dm3] 2R_9444530_SNP [dm6]	T	G	1.686e^-5	0.733	DOWNSTREAM CR45321 INTRON ced-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3254020	3L_3254020_SNP [dm3] 3L_3254020_SNP [dm6]	T	A	1.719e^-5	0.733	EXON CR43626
3L	9053026	3L_9053026_SNP [dm3] 3L_9059926_SNP [dm6]	T	A	1.773e^-5	0.733	INTRON Argk
2L	3710425	2L_3710425_SNP [dm3] 2L_3710425_SNP [dm6]	G	A	1.816e^-5	0.733	NON_SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10964278	3L_10964278_SNP [dm3] 3L_10971178_SNP [dm6]	C	A	1.832e^-5	0.733	INTERGENIC
2R	4050278	2R_4050278_SNP [dm3] 2R_8162773_SNP [dm6]	G	A	1.832e^-5	0.733	SYNONYMOUS_CODING RagC-D UPSTREAM Rs1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1669192	X_1669192_SNP [dm3] X_1775159_SNP [dm6]	C	A	1.872e^-5	0.733	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18597681	2R_18597681_SNP [dm3] 2R_22710176_SNP [dm6]	T	A	1.896e^-5	0.733	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3R	6977640	3R_6977640_SNP [dm3] 3R_11151918_SNP [dm6]	G	A	1.901e^-5	0.733	UTR_3_PRIME Ugt86Di
3L	10732992	3L_10732992_SNP [dm3] 3L_10739892_SNP [dm6]	A	T	2.053e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8964165	3L_8964165_SNP [dm3] 3L_8971065_SNP [dm6]	T	A	2.160e^-5	0.733	DOWNSTREAM pix INTRON CG5026
3L	11177497	3L_11177497_SNP [dm3] 3L_11184397_SNP [dm6]	G	C	2.175e^-5	0.733	START_GAINED GlcAT-P UTR_5_PRIME GlcAT-P
3L	6291184	3L_6291184_SNP [dm3] 3L_6298084_SNP [dm6]	A	C	2.266e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
X	1681033	X_1681033_SNP [dm3] X_1787000_SNP [dm6]	C	T	2.284e^-5	0.733	UTR_3_PRIME Adar INTRON CG42666
3L	14583429	3L_14583429_SNP [dm3] 3L_14590329_SNP [dm6]	C	T	2.390e^-5	0.733	INTRON HGTX
X	1926162	X_1926162_SNP [dm3] X_2032129_SNP [dm6]	C	T	2.407e^-5	0.733	INTRON Actn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	1665062	X_1665062_DEL [dm3] X_1771029_DEL [dm6]	CGCCCACTGCC...	C	2.457e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15937344	3L_15937344_SNP [dm3] 3L_15944244_SNP [dm6]	G	A	2.507e^-5	0.733	INTRON Pka-C3
3L	9031902	3L_9031902_SNP [dm3] 3L_9038802_SNP [dm6]	A	G	2.592e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10263655	2L_10263655_SNP [dm3] 2L_10263655_SNP [dm6]	G	T	2.597e^-5	0.733	UPSTREAM CG18619 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5331919	2R_5331919_SNP [dm3] 2R_9444414_SNP [dm6]	G	A	2.680e^-5	0.733	INTRON ced-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19080490	X_19080490_SNP [dm3] X_19186457_SNP [dm6]	T	A	2.681e^-5	0.733	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10966557	3L_10966557_SNP [dm3] 3L_10973457_SNP [dm6]	C	T	2.682e^-5	0.733	UTR_3_PRIME CG14147
3R	488352	3R_488352_SNP [dm3] 3R_4662630_SNP [dm6]	G	A	2.731e^-5	0.733	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	3694604	3L_3694604_SNP [dm3] 3L_3694604_SNP [dm6]	C	A	2.744e^-5	0.733	UPSTREAM CR43485 INTERGENIC
2L	15217351	2L_15217351_SNP [dm3] 2L_15217351_SNP [dm6]	T	C	2.831e^-5	0.733	INTERGENIC
3L	10966541	3L_10966541_SNP [dm3] 3L_10973441_SNP [dm6]	T	A	2.897e^-5	0.733	UTR_3_PRIME CG14147
3L	7248595	3L_7248595_SNP [dm3] 3L_7255495_SNP [dm6]	A	G	2.944e^-5	0.733	INTRON CG14830
3R	6980417	3R_6980417_SNP [dm3] 3R_11154695_SNP [dm6]	C	T	3.036e^-5	0.733	NON_SYNONYMOUS_CODING Ugt86Dc UPSTREAM Ugt86Di
3L	16790073	3L_16790073_SNP [dm3] 3L_16796973_SNP [dm6]	A	G	3.074e^-5	0.733	INTRON CG9674
X	10221415	X_10221415_SNP [dm3] X_10327382_SNP [dm6]	T	G	3.087e^-5	0.733	SYNONYMOUS_CODING CG2909	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9053062	3L_9053062_SNP [dm3] 3L_9059962_SNP [dm6]	G	A	3.088e^-5	0.733	INTRON Argk
3L	2005291	3L_2005291_SNP [dm3] 3L_2005291_SNP [dm6]	G	T	3.149e^-5	0.733	UTR_3_PRIME CG42841
2L	6423704	2L_6423704_SNP [dm3] 2L_6423704_SNP [dm6]	G	A	3.152e^-5	0.733	UPSTREAM Tig & 1 other INTERGENIC
2R	13510469	2R_13510469_SNP [dm3] 2R_17622964_SNP [dm6]	T	C	3.169e^-5	0.733	INTRON CG10936
3L	15565553	3L_15565553_SNP [dm3] 3L_15572453_SNP [dm6]	A	G	3.224e^-5	0.733	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6978282	3R_6978282_SNP [dm3] 3R_11152560_SNP [dm6]	T	C	3.244e^-5	0.733	SYNONYMOUS_CODING Ugt86Di
X	11730809	X_11730809_DEL [dm3] X_11836776_DEL [dm6]	AA	A	3.252e^-5	0.733	UTR_3_PRIME rudhira UPSTREAM CR43908 DOWNSTREAM CG15741
2R	19534961	2R_19534961_SNP [dm3] 2R_23647438_SNP [dm6]	T	G	3.323e^-5	0.733	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18593667	2R_18593667_SNP [dm3] 2R_22706162_SNP [dm6]	G	T	3.339e^-5	0.733	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_inv
2R	12549060	2R_12549060_SNP [dm3] 2R_16661555_SNP [dm6]	G	A	3.339e^-5	0.733	INTRON Picot
X	10127944	X_10127944_SNP [dm3] X_10233911_SNP [dm6]	T	C	3.427e^-5	0.733	UTR_3_PRIME Hk UPSTREAM Ipod DOWNSTREAM Hk
4	132000	4_132000_SNP [dm3] 4_111374_SNP [dm6]	G	A	3.442e^-5	0.733	UTR_3_PRIME pan
4	68001	4_68001_SNP [dm3] 4_47375_SNP [dm6]	G	C	3.467e^-5	0.733	DOWNSTREAM ci INTERGENIC	transposable element FlyBase
2R	12550564	2R_12550564_SNP [dm3] 2R_16663059_SNP [dm6]	A	T	3.493e^-5	0.733	INTRON Picot
3L	9032236	3L_9032236_SNP [dm3] 3L_9039136_SNP [dm6]	A	C	3.493e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14594201	3L_14594201_DEL [dm3] 3L_14601101_DEL [dm6]	TC	T	3.585e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17366157	2R_17366157_SNP [dm3] 2R_21478652_SNP [dm6]	A	T	3.652e^-5	0.733	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	10964287	3L_10964287_SNP [dm3] 3L_10971187_SNP [dm6]	C	T	3.678e^-5	0.733	INTERGENIC
2R	12701576	2R_12701576_SNP [dm3] 2R_16814071_SNP [dm6]	C	T	3.710e^-5	0.733	DOWNSTREAM CR44380 INTERGENIC
3L	9030702	3L_9030702_SNP [dm3] 3L_9037602_SNP [dm6]	T	G	3.739e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	6445657	2L_6445657_SNP [dm3] 2L_6445657_SNP [dm6]	G	A	3.767e^-5	0.733	SYNONYMOUS_CODING CG9527
3L	5864960	3L_5864960_SNP [dm3] 3L_5871860_SNP [dm6]	C	T	3.777e^-5	0.733	SYNONYMOUS_CODING CG5568
3L	6004191	3L_6004191_SNP [dm3] 3L_6011091_SNP [dm6]	C	T	3.828e^-5	0.733	UPSTREAM alphaKap4 INTRON PVRAP
2L	10398881	2L_10398881_INS [dm3] 2L_10398881_INS [dm6]	A	AGA	3.837e^-5	0.733	INTRON Cnot4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4413358	X_4413358_SNP [dm3] X_4519325_SNP [dm6]	G	T	3.978e^-5	0.733	INTRON CR32773
3L	3306760	3L_3306760_SNP [dm3] 3L_3306760_SNP [dm6]	C	T	3.993e^-5	0.733	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl
X	20775584	X_20775584_SNP [dm3] X_20904557_SNP [dm6]	C	T	4.125e^-5	0.733	INTRON shakB
3L	8832719	3L_8832719_SNP [dm3] 3L_8839619_SNP [dm6]	C	T	4.143e^-5	0.733	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11176344	3L_11176344_SNP [dm3] 3L_11183244_SNP [dm6]	T	G	4.171e^-5	0.733	INTRON GlcAT-P
X	19028026	X_19028026_SNP [dm3] X_19133993_SNP [dm6]	T	C	4.227e^-5	0.733	DOWNSTREAM CR45711 INTERGENIC
2L	7775062	2L_7775062_SNP [dm3] 2L_7775062_SNP [dm6]	A	C	4.561e^-5	0.733	DOWNSTREAM CG7179 & 1 other INTERGENIC
3L	14594162	3L_14594162_SNP [dm3] 3L_14601062_SNP [dm6]	C	T	4.720e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13932233	X_13932233_DEL [dm3] X_14038200_DEL [dm6]	ACA	A	4.779e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4869632	2L_4869632_SNP [dm3] 2L_4869632_SNP [dm6]	T	G	4.815e^-5	0.733	INTRON pog
3L	14594374	3L_14594374_SNP [dm3] 3L_14601274_SNP [dm6]	T	A	4.867e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12287832	2L_12287832_SNP [dm3] 2L_12287832_SNP [dm6]	C	A	4.879e^-5	0.733	INTRON aret
3L	8802742	3L_8802742_SNP [dm3] 3L_8809642_SNP [dm6]	A	C	4.886e^-5	0.733	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
3L	10732997	3L_10732997_SNP [dm3] 3L_10739897_SNP [dm6]	G	A	4.889e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	6002343	3L_6002343_SNP [dm3] 3L_6009243_SNP [dm6]	G	A	4.921e^-5	0.733	DOWNSTREAM alphaKap4 INTRON PVRAP	TF binding site mE1_TFBS_sbb
2R	7046812	2R_7046812_SNP [dm3] 2R_11159307_SNP [dm6]	T	A	4.945e^-5	0.733	INTRON CG13229 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	827926	3L_827926_SNP [dm3] 3L_827926_SNP [dm6]	A	G	4.945e^-5	0.733	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 UPSTREAM snoRNA:Me28S-C788b & 3 others EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	9815480	3R_9815480_SNP [dm3] 3R_13989758_SNP [dm6]	T	C	4.945e^-5	0.733	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10732969	3L_10732969_SNP [dm3] 3L_10739869_SNP [dm6]	T	A	5.081e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14594421	3L_14594421_SNP [dm3] 3L_14601321_SNP [dm6]	C	T	5.095e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12287807	2L_12287807_SNP [dm3] 2L_12287807_SNP [dm6]	A	C	5.098e^-5	0.733	SPLICE_SITE_REGION aret UTR_5_PRIME aret INTRON aret
4	190187	4_190187_SNP [dm3] 4_169561_SNP [dm6]	T	G	5.126e^-5	0.733	NON_SYNONYMOUS_CODING CG33978 INTRON CG33978	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5904847	3L_5904847_DEL [dm3] 3L_5911747_DEL [dm6]	GCGTT	G	5.164e^-5	0.733	INTRON CG13288
2R	13241474	2R_13241474_SNP [dm3] 2R_17353969_SNP [dm6]	C	T	5.207e^-5	0.733	DOWNSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl
3L	16169544	3L_16169544_SNP [dm3] 3L_16176444_SNP [dm6]	T	C	5.234e^-5	0.733	UPSTREAM CR45754 DOWNSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11177610	3L_11177610_SNP [dm3] 3L_11184510_SNP [dm6]	C	T	5.234e^-5	0.733	INTRON GlcAT-P
2L	12287893	2L_12287893_SNP [dm3] 2L_12287893_SNP [dm6]	G	T	5.377e^-5	0.733	INTRON aret
2L	12287826	2L_12287826_SNP [dm3] 2L_12287826_SNP [dm6]	A	T	5.392e^-5	0.733	INTRON aret
3L	8001460	3L_8001460_SNP [dm3] 3L_8008360_SNP [dm6]	C	A	5.488e^-5	0.733	INTRON nmo
3L	15558563	3L_15558563_SNP [dm3] 3L_15565463_SNP [dm6]	T	C	5.492e^-5	0.733	UTR_3_PRIME CG7427 UPSTREAM CG6498 DOWNSTREAM CG7427	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	3135393	3L_3135393_SNP [dm3] 3L_3135393_SNP [dm6]	C	T	5.511e^-5	0.733	INTRON CG11537
3L	10965439	3L_10965439_SNP [dm3] 3L_10972339_SNP [dm6]	C	T	5.569e^-5	0.733	UPSTREAM CG14147 INTERGENIC
4	132012	4_132012_SNP [dm3] 4_111386_SNP [dm6]	G	A	5.596e^-5	0.733	UTR_3_PRIME pan
3R	6978660	3R_6978660_SNP [dm3] 3R_11152938_SNP [dm6]	A	T	5.606e^-5	0.733	SYNONYMOUS_CODING Ugt86Di
3R	16842709	3R_16842709_SNP [dm3] 3R_21016987_SNP [dm6]	C	T	5.609e^-5	0.733	UTR_3_PRIME CG5697 UPSTREAM Rlip	TF binding site mE1_TFBS_cad
2R	6882229	2R_6882229_INS [dm3] 2R_10994724_INS [dm6]	C	CC	5.614e^-5	0.733	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	23370638	3R_23370638_SNP [dm3] 3R_27544916_SNP [dm6]	T	C	5.674e^-5	0.733	SYNONYMOUS_CODING Gr98c
2L	6423831	2L_6423831_SNP [dm3] 2L_6423831_SNP [dm6]	G	A	5.700e^-5	0.733	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21469552	3R_21469552_SNP [dm3] 3R_25643830_SNP [dm6]	T	A	5.719e^-5	0.733	INTRON jigr1
2L	8369151	2L_8369151_SNP [dm3] 2L_8369151_SNP [dm6]	C	T	5.759e^-5	0.733	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	5562865	2L_5562865_SNP [dm3] 2L_5562865_SNP [dm6]	C	T	5.926e^-5	0.733	INTRON GluRIIB	TF binding site mE1_TFBS_cad
3L	6001737	3L_6001737_SNP [dm3] 3L_6008637_SNP [dm6]	T	C	5.938e^-5	0.733	DOWNSTREAM alphaKap4 INTRON PVRAP
3R	6976657	3R_6976657_SNP [dm3] 3R_11150935_SNP [dm6]	A	T	5.943e^-5	0.733	DOWNSTREAM Ugt86Di INTERGENIC
X	1679533	X_1679533_SNP [dm3] X_1785500_SNP [dm6]	G	A	5.943e^-5	0.733	UTR_3_PRIME Adar INTRON CG42666
X	13932241	X_13932241_SNP [dm3] X_14038208_SNP [dm6]	T	C	5.975e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
4	715581	4_715581_SNP [dm3] 4_694955_SNP [dm6]	T	C	5.998e^-5	0.733	INTRON myo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5580032	2L_5580032_SNP [dm3] 2L_5580032_SNP [dm6]	A	G	6.023e^-5	0.733	NON_SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	16811608	X_16811608_SNP [dm3] X_16917575_SNP [dm6]	G	T	6.136e^-5	0.733	INTRON CG4928
3L	19410952	3L_19410952_DEL [dm3] 3L_19417852_DEL [dm6]	GATGGCTGGCAGCCCCGAAA...	G	6.153e^-5	0.733	INTERGENIC
X	1682657	X_1682657_SNP [dm3] X_1788624_SNP [dm6]	T	C	6.211e^-5	0.733	UPSTREAM CG32806 DOWNSTREAM mir-981 & 1 other INTRON CG42666
3L	11252543	3L_11252543_SNP [dm3] 3L_11259443_SNP [dm6]	G	C	6.212e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7597034	3L_7597034_SNP [dm3] 3L_7603934_SNP [dm6]	C	T	6.222e^-5	0.733	NON_SYNONYMOUS_CODING CG33275
3L	6557834	3L_6557834_SNP [dm3] 3L_6564734_SNP [dm6]	A	G	6.238e^-5	0.733	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_inv
2R	13510544	2R_13510544_SNP [dm3] 2R_17623039_SNP [dm6]	C	T	6.286e^-5	0.733	INTRON CG10936
2R	12549097	2R_12549097_SNP [dm3] 2R_16661592_SNP [dm6]	G	C	6.337e^-5	0.733	INTRON Picot
3L	18607526	3L_18607526_SNP [dm3] 3L_18614426_SNP [dm6]	C	A	6.412e^-5	0.733	DOWNSTREAM CG32199 INTRON CG4174 & 1 other
2R	9998404	2R_9998404_SNP [dm3] 2R_14110899_SNP [dm6]	G	A	6.427e^-5	0.733	INTRON Prosap
2R	18593666	2R_18593666_SNP [dm3] 2R_22706161_SNP [dm6]	T	A	6.496e^-5	0.733	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_inv
3L	5999060	3L_5999060_SNP [dm3] 3L_6005960_SNP [dm6]	A	T	6.535e^-5	0.733	INTRON PVRAP
3R	15788533	3R_15788533_SNP [dm3] 3R_19962811_SNP [dm6]	A	T	6.629e^-5	0.733	INTRON Hs6st
3L	3261021	3L_3261021_SNP [dm3] 3L_3261021_SNP [dm6]	T	G	6.678e^-5	0.733	INTRON ckd
3R	9815478	3R_9815478_SNP [dm3] 3R_13989756_SNP [dm6]	A	G	6.684e^-5	0.733	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14595688	3L_14595688_INS [dm3] 3L_14602588_INS [dm6]	A	AGAA	6.710e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	6981976	3R_6981976_SNP [dm3] 3R_11156254_SNP [dm6]	A	G	6.729e^-5	0.733	NON_SYNONYMOUS_CODING Ugt86Dc UPSTREAM Ugt86Da
3L	2005159	3L_2005159_SNP [dm3] 3L_2005159_SNP [dm6]	G	C	6.762e^-5	0.733	UTR_3_PRIME CG42841
3L	5867804	3L_5867804_SNP [dm3] 3L_5874704_SNP [dm6]	A	G	6.762e^-5	0.733	SYNONYMOUS_CODING CG18586
2L	13267257	2L_13267257_SNP [dm3] 2L_13267257_SNP [dm6]	G	C	6.813e^-5	0.733	UPSTREAM CG44085 INTRON CG44085
3R	4861851	3R_4861851_SNP [dm3] 3R_9036129_SNP [dm6]	G	C	6.860e^-5	0.733	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16668065	X_16668065_SNP [dm3] X_16774032_SNP [dm6]	C	T	6.917e^-5	0.733	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5864963	3L_5864963_SNP [dm3] 3L_5871863_SNP [dm6]	C	T	6.927e^-5	0.733	SYNONYMOUS_CODING CG5568
3L	11380318	3L_11380318_SNP [dm3] 3L_11387218_SNP [dm6]	G	A	7.038e^-5	0.733	INTERGENIC
3L	18186161	3L_18186161_SNP [dm3] 3L_18193061_SNP [dm6]	A	T	7.083e^-5	0.733	INTERGENIC
3L	6291073	3L_6291073_SNP [dm3] 3L_6297973_SNP [dm6]	A	G	7.195e^-5	0.733	INTERGENIC
3L	8724199	3L_8724199_SNP [dm3] 3L_8731099_SNP [dm6]	C	G	7.214e^-5	0.733	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3L	8960341	3L_8960341_SNP [dm3] 3L_8967241_SNP [dm6]	T	C	7.258e^-5	0.733	UPSTREAM CG5653 INTRON CG5021	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1684555	X_1684555_SNP [dm3] X_1790522_SNP [dm6]	A	C	7.280e^-5	0.733	DOWNSTREAM CG32806 INTRON CG42666
3L	11526612	3L_11526612_SNP [dm3] 3L_11533512_SNP [dm6]	C	T	7.315e^-5	0.733	INTRON Mob2
X	2439185	X_2439185_DEL [dm3] X_2545152_DEL [dm6]	TA	T	7.332e^-5	0.733	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4313855	3L_4313855_INS [dm3] 3L_4313855_INS [dm6]	A	ATGA	7.335e^-5	0.733		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	8827908	3L_8827908_INS [dm3] 3L_8834808_INS [dm6]	A	ATTATAA	7.413e^-5	0.733	INTRON dally	TF binding site mE1_TFBS_inv
X	6100674	X_6100674_DEL [dm3] X_6206641_DEL [dm6]	GATT	G	7.459e^-5	0.733	INTERGENIC
3R	6979812	3R_6979812_SNP [dm3] 3R_11154090_SNP [dm6]	C	G	7.551e^-5	0.733	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3L	6497829	3L_6497829_SNP [dm3] 3L_6504729_SNP [dm6]	G	A	7.570e^-5	0.733	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9032491	3L_9032491_SNP [dm3] 3L_9039391_SNP [dm6]	A	G	7.593e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10964185	3L_10964185_DEL [dm3] 3L_10971085_DEL [dm6]	ATTTCA	A	7.623e^-5	0.733	INTERGENIC
3L	5864966	3L_5864966_SNP [dm3] 3L_5871866_SNP [dm6]	G	T	7.641e^-5	0.733	NON_SYNONYMOUS_CODING CG5568
4	166813	4_166813_SNP [dm3] 4_146187_SNP [dm6]	G	A	7.643e^-5	0.733	INTERGENIC	transposable element FlyBase
4	74667	4_74667_SNP [dm3] 4_54041_SNP [dm6]	T	A	7.643e^-5	0.733	INTRON ci	transposable element FlyBase
4	85304	4_85304_SNP [dm3] 4_64678_SNP [dm6]	G	C	7.643e^-5	0.733	DOWNSTREAM RpS3A & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1681783	X_1681783_SNP [dm3] X_1787750_SNP [dm6]	G	T	7.646e^-5	0.733	UTR_3_PRIME Adar INTRON CG42666
3L	14594418	3L_14594418_SNP [dm3] 3L_14601318_SNP [dm6]	T	A	7.656e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6291100	3L_6291100_SNP [dm3] 3L_6298000_SNP [dm6]	G	A	7.694e^-5	0.733	INTERGENIC
3L	14594206	3L_14594206_SNP [dm3] 3L_14601106_SNP [dm6]	C	T	7.725e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8704880	2L_8704880_SNP [dm3] 2L_8704880_SNP [dm6]	G	C	7.798e^-5	0.733	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992
3L	10964377	3L_10964377_SNP [dm3] 3L_10971277_SNP [dm6]	T	A	7.802e^-5	0.733	INTERGENIC
3L	14594247	3L_14594247_SNP [dm3] 3L_14601147_SNP [dm6]	T	G	7.815e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	1918823	X_1918823_SNP [dm3] X_2024790_SNP [dm6]	T	C	7.858e^-5	0.733	UTR_3_PRIME Actn DOWNSTREAM Actn & 1 other	TF binding site BDTNP1_TFBS_dl
3L	5907046	3L_5907046_SNP [dm3] 3L_5913946_SNP [dm6]	G	A	7.899e^-5	0.733	INTRON CG13288
2L	10264347	2L_10264347_SNP [dm3] 2L_10264347_SNP [dm6]	G	T	7.934e^-5	0.733	UPSTREAM Rsf1 & 1 other INTRON CG18619	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3696597	3L_3696597_SNP [dm3] 3L_3696597_SNP [dm6]	C	A	8.014e^-5	0.733	INTERGENIC
4	310932	4_310932_SNP [dm3] 4_290306_SNP [dm6]	G	T	8.018e^-5	0.733	INTRON Syt7	transposable element FlyBase
4	284782	4_284782_SNP [dm3] 4_264156_SNP [dm6]	C	A	8.131e^-5	0.733	INTRON RhoGAP102A
2L	15217262	2L_15217262_SNP [dm3] 2L_15217262_SNP [dm6]	A	C	8.166e^-5	0.733	INTERGENIC
3L	6160572	3L_6160572_INS [dm3] 3L_6167472_INS [dm6]	T	TT	8.167e^-5	0.733	UTR_3_PRIME CG10289
3L	13982789	3L_13982789_SNP [dm3] 3L_13989689_SNP [dm6]	G	C	8.186e^-5	0.733	INTRON CG17364
3L	10985646	3L_10985646_SNP [dm3] 3L_10992546_SNP [dm6]	A	G	8.220e^-5	0.733	INTRON klu
3L	8827895	3L_8827895_SNP [dm3] 3L_8834795_SNP [dm6]	C	T	8.263e^-5	0.733	INTRON dally	TF binding site mE1_TFBS_inv
3L	14582094	3L_14582094_SNP [dm3] 3L_14588994_SNP [dm6]	A	C	8.314e^-5	0.733	INTRON HGTX
3L	16398685	3L_16398685_SNP [dm3] 3L_16405585_SNP [dm6]	T	A	8.338e^-5	0.733	SYNONYMOUS_CODING fax	TF binding site mE1_TFBS_sens
2L	16261364	2L_16261364_SNP [dm3] 2L_16261364_SNP [dm6]	G	T	8.379e^-5	0.733	NON_SYNONYMOUS_CODING twe UPSTREAM CG4935	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16015282	2L_16015282_SNP [dm3] 2L_16015282_SNP [dm6]	G	A	8.411e^-5	0.733	INTRON beat-Ic
X	13967820	X_13967820_SNP [dm3] X_14073787_SNP [dm6]	A	C	8.472e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14594111	3L_14594111_SNP [dm3] 3L_14601011_SNP [dm6]	G	C	8.484e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16251886	2R_16251886_SNP [dm3] 2R_20364381_SNP [dm6]	A	T	8.530e^-5	0.733	INTERGENIC
2L	3824453	2L_3824453_SNP [dm3] 2L_3824453_SNP [dm6]	A	G	8.589e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11179060	3L_11179060_SNP [dm3] 3L_11185960_SNP [dm6]	A	T	8.629e^-5	0.733	INTRON GlcAT-P
3L	3487616	3L_3487616_SNP [dm3] 3L_3487616_SNP [dm6]	T	C	8.639e^-5	0.733	INTRON CG42324
3R	6979428	3R_6979428_SNP [dm3] 3R_11153706_SNP [dm6]	G	A	8.701e^-5	0.733	NON_SYNONYMOUS_CODING Ugt86Di UPSTREAM Ugt86Dc
2L	5580020	2L_5580020_SNP [dm3] 2L_5580020_SNP [dm6]	T	C	8.703e^-5	0.733	NON_SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15468990	2L_15468990_SNP [dm3] 2L_15468990_SNP [dm6]	G	A	8.758e^-5	0.733	EXON CR45353
3L	2442704	3L_2442704_SNP [dm3] 3L_2442704_SNP [dm6]	G	A	8.761e^-5	0.733	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12194373	3L_12194373_SNP [dm3] 3L_12201273_SNP [dm6]	T	G	8.830e^-5	0.733	INTRON Adk1
3R	26034395	3R_26034395_SNP [dm3] 3R_30208673_SNP [dm6]	C	T	8.863e^-5	0.733	START_GAINED RpS7 UTR_5_PRIME RpS7 UPSTREAM snoRNA:Psi18S-1377a & 1 other INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3015262	3L_3015262_SNP [dm3] 3L_3015262_SNP [dm6]	G	T	8.888e^-5	0.733	DOWNSTREAM CG32487 INTRON CG32488
3L	6028060	3L_6028060_INS [dm3] 3L_6034960_INS [dm6]	A	ACGATTATTGAG...	8.899e^-5	0.733	UPSTREAM yip7 & 1 other INTERGENIC
2R	10627458	2R_10627458_INS [dm3] 2R_14739953_INS [dm6]	T	TTT	8.929e^-5	0.733	UTR_3_PRIME CG12858 UPSTREAM CR43428 DOWNSTREAM CG12858
X	20491119	X_20491119_SNP [dm3] X_20620092_SNP [dm6]	C	T	8.961e^-5	0.733	INTRON RunxA
2R	12551834	2R_12551834_SNP [dm3] 2R_16664329_SNP [dm6]	G	T	9.075e^-5	0.733	UPSTREAM Picot INTRON Picot
4	368338	4_368338_SNP [dm3] 4_347712_SNP [dm6]	T	A	9.104e^-5	0.733	INTRON PMCA	transposable element FlyBase
X	16364705	X_16364705_SNP [dm3] X_16470672_SNP [dm6]	C	T	9.112e^-5	0.733	INTRON para
X	1685561	X_1685561_SNP [dm3] X_1791528_SNP [dm6]	A	G	9.176e^-5	0.733	INTRON CG42666
2L	10264440	2L_10264440_SNP [dm3] 2L_10264440_SNP [dm6]	A	T	9.190e^-5	0.733	UPSTREAM Rsf1 & 1 other INTRON CG18619	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26034438	3R_26034438_SNP [dm3] 3R_30208716_SNP [dm6]	T	C	9.209e^-5	0.733	UTR_5_PRIME RpS7 UPSTREAM snoRNA:Psi18S-1377a & 2 others INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	6977856	3R_6977856_SNP [dm3] 3R_11152134_SNP [dm6]	T	G	9.210e^-5	0.733	SYNONYMOUS_CODING Ugt86Di
2R	13513064	2R_13513064_SNP [dm3] 2R_17625559_SNP [dm6]	C	T	9.304e^-5	0.733	INTRON CG10936
3L	3010547	3L_3010547_SNP [dm3] 3L_3010547_SNP [dm6]	T	C	9.315e^-5	0.733	UTR_3_PRIME FMRFaR
3L	7181575	3L_7181575_DEL [dm3] 3L_7188475_DEL [dm6]	AA	A	9.320e^-5	0.733	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi
3R	10419181	3R_10419181_SNP [dm3] 3R_14593459_SNP [dm6]	G	C	9.334e^-5	0.733	INTRON stumps
3L	19386731	3L_19386731_SNP [dm3] 3L_19393631_SNP [dm6]	C	T	9.362e^-5	0.733	INTRON CG32206
3L	14594368	3L_14594368_SNP [dm3] 3L_14601268_SNP [dm6]	C	G	9.411e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12268966	3L_12268966_SNP [dm3] 3L_12275866_SNP [dm6]	C	A	9.483e^-5	0.733	INTRON CG4300	TF binding site BDTNP1_TFBS_twi
2L	4265521	2L_4265521_SNP [dm3] 2L_4265521_SNP [dm6]	C	G	9.498e^-5	0.733	INTERGENIC
X	10127949	X_10127949_SNP [dm3] X_10233916_SNP [dm6]	T	C	9.586e^-5	0.733	UTR_3_PRIME Hk UPSTREAM Ipod DOWNSTREAM Hk
2R	16022097	2R_16022097_INS [dm3] 2R_20134592_INS [dm6]	T	TT	9.610e^-5	0.733	INTERGENIC
3L	14583420	3L_14583420_SNP [dm3] 3L_14590320_SNP [dm6]	T	C	9.662e^-5	0.733	INTRON HGTX
3L	4313894	3L_4313894_SNP [dm3] 3L_4313894_SNP [dm6]	G	A	9.683e^-5	0.733	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	13466964	2L_13466964_SNP [dm3] 2L_13466964_SNP [dm6]	C	G	9.727e^-5	0.733	INTRON CG42784
2R	3314614	2R_3314614_SNP [dm3] 2R_7427109_SNP [dm6]	A	C	9.808e^-5	0.733	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8855865	3L_8855865_SNP [dm3] 3L_8862765_SNP [dm6]	G	T	9.874e^-5	0.733	INTRON dally	TF binding site BDTNP1_TFBS_prd
3L	5867745	3L_5867745_SNP [dm3] 3L_5874645_SNP [dm6]	T	A	9.877e^-5	0.733	NON_SYNONYMOUS_CODING CG18586	TF binding site mE1_TFBS_sens
X	1682480	X_1682480_SNP [dm3] X_1788447_SNP [dm6]	G	C	9.902e^-5	0.733	DOWNSTREAM mir-981 & 1 other INTRON CG42666
4	151659	4_151659_SNP [dm3] 4_131033_SNP [dm6]	G	T	9.902e^-5	0.733	INTERGENIC	transposable element FlyBase
3L	8960368	3L_8960368_DEL [dm3] 3L_8967268_DEL [dm6]	CGTGTACTCCAC...	C	9.911e^-5	0.733	SPLICE_SITE_REGION CG5021 UPSTREAM CG5653 INTRON CG5021	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9435825	X_9435825_SNP [dm3] X_9541792_SNP [dm6]	C	G	9.935e^-5	0.733	INTRON CG32700
3L	17363905	3L_17363905_SNP [dm3] 3L_17370805_SNP [dm6]	G	A	9.997e^-5	0.733	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10733111	3L_10733111_SNP [dm3] 3L_10740011_SNP [dm6]	A	T	1.002e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	9230080	X_9230080_SNP [dm3] X_9336047_SNP [dm6]	G	C	1.004e^-4	0.733	INTRON CG34449
2L	5650329	2L_5650329_DEL [dm3] 2L_5650329_DEL [dm6]	GAAATATCACAGTACATTTT...	G	1.013e^-4	0.733	INTRON CG31646
3L	18654587	3L_18654587_SNP [dm3] 3L_18661487_SNP [dm6]	C	T	1.019e^-4	0.733	UTR_5_PRIME MYPT-75D
2R	12549441	2R_12549441_SNP [dm3] 2R_16661936_SNP [dm6]	T	A	1.022e^-4	0.733	INTRON Picot
3L	12544228	3L_12544228_SNP [dm3] 3L_12551128_SNP [dm6]	G	C	1.024e^-4	0.733	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	14594367	3L_14594367_SNP [dm3] 3L_14601267_SNP [dm6]	A	G	1.029e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	11322402	X_11322402_SNP [dm3] X_11428369_SNP [dm6]	T	C	1.040e^-4	0.733	INTRON Gs2
3R	20208177	3R_20208177_SNP [dm3] 3R_24382455_SNP [dm6]	G	T	1.041e^-4	0.733	DOWNSTREAM CG17780 INTERGENIC
X	19027710	X_19027710_SNP [dm3] X_19133677_SNP [dm6]	G	A	1.052e^-4	0.733	DOWNSTREAM CR45711 INTERGENIC
4	141613	4_141613_SNP [dm3] 4_120987_SNP [dm6]	C	T	1.062e^-4	0.733	SYNONYMOUS_CODING Ank
3L	4620906	3L_4620906_SNP [dm3] 3L_4620906_SNP [dm6]	A	T	1.066e^-4	0.733	UPSTREAM CG32246 INTRON Src64B
3L	5966926	3L_5966926_SNP [dm3] 3L_5973826_SNP [dm6]	C	T	1.074e^-4	0.733	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	12901596	3L_12901596_SNP [dm3] 3L_12908496_SNP [dm6]	C	A	1.086e^-4	0.733	INTERGENIC
X	19027998	X_19027998_SNP [dm3] X_19133965_SNP [dm6]	T	C	1.092e^-4	0.733	DOWNSTREAM CR45711 INTERGENIC
3L	14594353	3L_14594353_SNP [dm3] 3L_14601253_SNP [dm6]	A	T	1.097e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17521151	3R_17521151_SNP [dm3] 3R_21695429_SNP [dm6]	C	T	1.098e^-4	0.733	INTRON CG31176
X	16926515	X_16926515_SNP [dm3] X_17032482_SNP [dm6]	A	T	1.109e^-4	0.733	SYNONYMOUS_CODING CG45002 INTRON CG45002
3L	6291097	3L_6291097_SNP [dm3] 3L_6297997_SNP [dm6]	G	T	1.110e^-4	0.733	INTERGENIC
3R	18462	3R_18462_SNP [dm3] 3R_4192740_SNP [dm6]	G	T	1.113e^-4	0.733	INTRON CR33294	transposable element FlyBase
3L	2005293	3L_2005293_SNP [dm3] 3L_2005293_SNP [dm6]	A	G	1.129e^-4	0.733	UTR_3_PRIME CG42841
3L	7541902	3L_7541902_SNP [dm3] 3L_7548802_SNP [dm6]	C	T	1.133e^-4	0.733	INTERGENIC
3R	23039963	3R_23039963_SNP [dm3] 3R_27214241_SNP [dm6]	C	T	1.136e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9141521	2R_9141521_SNP [dm3] 2R_13254016_SNP [dm6]	A	G	1.139e^-4	0.733	SYNONYMOUS_CODING CG4714 DOWNSTREAM CR44343	TF binding site mE1_TFBS_cad
4	274915	4_274915_SNP [dm3] 4_254289_SNP [dm6]	G	A	1.141e^-4	0.733	UPSTREAM dpr7 & 1 other INTERGENIC	TF binding site mE1_TFBS_kn transposable element FlyBase
3R	6545220	3R_6545220_SNP [dm3] 3R_10719498_SNP [dm6]	T	C	1.149e^-4	0.733	INTERGENIC
3R	6979475	3R_6979475_SNP [dm3] 3R_11153753_SNP [dm6]	C	T	1.154e^-4	0.733	NON_SYNONYMOUS_CODING Ugt86Di UPSTREAM Ugt86Dc
3R	4263909	3R_4263909_SNP [dm3] 3R_8438187_SNP [dm6]	T	A	1.159e^-4	0.733	INTRON CG45263
3L	878648	3L_878648_SNP [dm3] 3L_878648_SNP [dm6]	T	C	1.162e^-4	0.733	SYNONYMOUS_CODING CG13907 INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15337961	2L_15337961_SNP [dm3] 2L_15337961_SNP [dm6]	C	T	1.162e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10779258	3L_10779258_SNP [dm3] 3L_10786158_SNP [dm6]	C	A	1.166e^-4	0.733	DOWNSTREAM CR44544 INTERGENIC
3R	26034441	3R_26034441_SNP [dm3] 3R_30208719_SNP [dm6]	G	A	1.170e^-4	0.733	START_GAINED RpS7 UTR_5_PRIME RpS7 UPSTREAM snoRNA:Psi18S-1377a & 2 others INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7249899	3L_7249899_SNP [dm3] 3L_7256799_SNP [dm6]	T	C	1.171e^-4	0.733	INTRON CG14830
3L	3395052	3L_3395052_DEL [dm3] 3L_3395052_DEL [dm6]	TCAAATAGCT	T	1.176e^-4	0.733	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	10816126	2R_10816126_SNP [dm3] 2R_14928621_SNP [dm6]	C	T	1.187e^-4	0.733	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	6568973	2R_6568973_SNP [dm3] 2R_10681468_SNP [dm6]	T	C	1.187e^-4	0.733	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7249892	3L_7249892_SNP [dm3] 3L_7256792_SNP [dm6]	C	T	1.187e^-4	0.733	INTRON CG14830
X	16926414	X_16926414_SNP [dm3] X_17032381_SNP [dm6]	C	G	1.195e^-4	0.733	INTRON CG45002
X	11322401	X_11322401_SNP [dm3] X_11428368_SNP [dm6]	A	C	1.199e^-4	0.733	INTRON Gs2
2L	11322313	2L_11322313_SNP [dm3] 2L_11322313_SNP [dm6]	T	A	1.199e^-4	0.733	INTERGENIC
3L	6002317	3L_6002317_SNP [dm3] 3L_6009217_SNP [dm6]	G	A	1.203e^-4	0.733	DOWNSTREAM alphaKap4 INTRON PVRAP	TF binding site mE1_TFBS_sbb
3L	6018284	3L_6018284_SNP [dm3] 3L_6025184_SNP [dm6]	A	G	1.215e^-4	0.733	SYNONYMOUS_CODING PVRAP
3L	8965132	3L_8965132_SNP [dm3] 3L_8972032_SNP [dm6]	A	G	1.219e^-4	0.733	DOWNSTREAM pix & 1 other INTERGENIC
X	2439174	X_2439174_SNP [dm3] X_2545141_SNP [dm6]	G	T	1.219e^-4	0.733	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25909140	3R_25909140_SNP [dm3] 3R_30083418_SNP [dm6]	T	C	1.220e^-4	0.733	INTRON sima
3R	16864518	3R_16864518_SNP [dm3] 3R_21038796_SNP [dm6]	C	T	1.221e^-4	0.733	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
2L	19128298	2L_19128298_SNP [dm3] 2L_19128298_SNP [dm6]	A	G	1.222e^-4	0.733	SYNONYMOUS_CODING l_2_37Cd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24027183	3R_24027183_SNP [dm3] 3R_28201461_SNP [dm6]	T	A	1.224e^-4	0.733	INTRON CG34354
3L	8962566	3L_8962566_SNP [dm3] 3L_8969466_SNP [dm6]	C	A	1.228e^-4	0.733	INTRON CG5026	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8827906	3L_8827906_SNP [dm3] 3L_8834806_SNP [dm6]	T	A	1.229e^-4	0.733	INTRON dally	TF binding site mE1_TFBS_inv
3L	9737053	3L_9737053_SNP [dm3] 3L_9743953_SNP [dm6]	A	G	1.230e^-4	0.733	UTR_5_PRIME CG42268 INTRON CG42268 & 1 other
3L	3260995	3L_3260995_SNP [dm3] 3L_3260995_SNP [dm6]	C	T	1.236e^-4	0.733	INTRON ckd
2R	6882211	2R_6882211_SNP [dm3] 2R_10994706_SNP [dm6]	G	A	1.241e^-4	0.733	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	480651	3R_480651_SNP [dm3] 3R_4654929_SNP [dm6]	T	C	1.248e^-4	0.733	UTR_5_PRIME spartin UPSTREAM spartin DOWNSTREAM Karybeta3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	1676533	X_1676533_INS [dm3] X_1782500_INS [dm6]	T	TT	1.251e^-4	0.733	INTRON CG42666 & 1 other
2L	7652418	2L_7652418_SNP [dm3] 2L_7652418_SNP [dm6]	C	T	1.258e^-4	0.733	INTRON Slob
3L	4314146	3L_4314146_SNP [dm3] 3L_4314146_SNP [dm6]	C	T	1.258e^-4	0.733	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	8832728	3L_8832728_SNP [dm3] 3L_8839628_SNP [dm6]	T	C	1.260e^-4	0.733	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	1684231	X_1684231_SNP [dm3] X_1790198_SNP [dm6]	T	C	1.264e^-4	0.733	SYNONYMOUS_CODING CG32806 INTRON CG42666
3L	2917758	3L_2917758_SNP [dm3] 3L_2917758_SNP [dm6]	T	G	1.270e^-4	0.733	INTRON Shab
3R	24423266	3R_24423266_DEL [dm3] 3R_28597544_DEL [dm6]	GCAATGCCTAAAATGTTTCA...	G	1.271e^-4	0.733	DOWNSTREAM Noa36 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4313871	3L_4313871_SNP [dm3] 3L_4313871_SNP [dm6]	A	T	1.276e^-4	0.733	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	6568935	2R_6568935_SNP [dm3] 2R_10681430_SNP [dm6]	T	C	1.280e^-4	0.733	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4314003	3L_4314003_SNP [dm3] 3L_4314003_SNP [dm6]	A	C	1.286e^-4	0.733	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	18651464	3L_18651464_SNP [dm3] 3L_18658364_SNP [dm6]	C	G	1.287e^-4	0.733	INTRON MYPT-75D
3L	18651474	3L_18651474_SNP [dm3] 3L_18658374_SNP [dm6]	A	G	1.287e^-4	0.733	INTRON MYPT-75D
3L	14670068	3L_14670068_SNP [dm3] 3L_14676968_SNP [dm6]	T	C	1.289e^-4	0.733	INTRON ome & 1 other
2L	2656157	2L_2656157_SNP [dm3] 2L_2656157_SNP [dm6]	C	G	1.289e^-4	0.733	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a
X	19022647	X_19022647_SNP [dm3] X_19128614_SNP [dm6]	C	G	1.291e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2439222	X_2439222_SNP [dm3] X_2545189_SNP [dm6]	C	A	1.292e^-4	0.733	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18651532	3L_18651532_SNP [dm3] 3L_18658432_SNP [dm6]	C	T	1.293e^-4	0.733	INTRON MYPT-75D
3L	10386281	3L_10386281_SNP [dm3] 3L_10393181_SNP [dm6]	T	C	1.298e^-4	0.733	INTERGENIC
3R	24027265	3R_24027265_SNP [dm3] 3R_28201543_SNP [dm6]	T	G	1.317e^-4	0.733	INTRON CG34354
2L	9439257	2L_9439257_SNP [dm3] 2L_9439257_SNP [dm6]	T	C	1.318e^-4	0.733	DOWNSTREAM CG33723 INTRON numb
4	657523	4_657523_DEL [dm3] 4_636897_DEL [dm6]	GAACTGGCCATGTCCGTCTG...	G	1.318e^-4	0.733	UPSTREAM CR44028 INTRON CG9935	transposable element FlyBase
3L	4313814	3L_4313814_SNP [dm3] 3L_4313814_SNP [dm6]	A	G	1.321e^-4	0.733	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15069958	X_15069958_SNP [dm3] X_15175925_SNP [dm6]	T	G	1.325e^-4	0.733	UTR_5_PRIME CG43737	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14594357	3L_14594357_SNP [dm3] 3L_14601257_SNP [dm6]	G	A	1.326e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6981725	2L_6981725_SNP [dm3] 2L_6981725_SNP [dm6]	G	C	1.330e^-4	0.733	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10461980	2R_10461980_SNP [dm3] 2R_14574475_SNP [dm6]	C	T	1.335e^-4	0.733	INTRON ttv & 1 other	TF binding site BDTNP1_TFBS_dl
3L	16489233	3L_16489233_SNP [dm3] 3L_16496133_SNP [dm6]	T	C	1.336e^-4	0.733	START_GAINED CG42514 UTR_5_PRIME CG42514 UPSTREAM CG42514 INTRON CG33158 & 2 others
2R	9695952	2R_9695952_SNP [dm3] 2R_13808447_SNP [dm6]	A	G	1.337e^-4	0.733	INTRON stj
3R	25616054	3R_25616054_SNP [dm3] 3R_29790332_SNP [dm6]	A	G	1.341e^-4	0.733	SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
3L	8961457	3L_8961457_SNP [dm3] 3L_8968357_SNP [dm6]	G	T	1.347e^-4	0.733	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
2L	14589856	2L_14589856_SNP [dm3] 2L_14589856_SNP [dm6]	G	T	1.349e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8832926	3L_8832926_SNP [dm3] 3L_8839826_SNP [dm6]	G	T	1.355e^-4	0.733	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11177569	3L_11177569_DEL [dm3] 3L_11184469_DEL [dm6]	ACTTATGACAA...	A	1.358e^-4	0.733	INTRON GlcAT-P
3L	10727786	3L_10727786_SNP [dm3] 3L_10734686_SNP [dm6]	A	G	1.359e^-4	0.733	INTERGENIC
3L	10801548	3L_10801548_SNP [dm3] 3L_10808448_SNP [dm6]	G	T	1.364e^-4	0.733	INTERGENIC
3L	8965760	3L_8965760_SNP [dm3] 3L_8972660_SNP [dm6]	G	C	1.365e^-4	0.733	DOWNSTREAM CG5026 INTRON pix	TF binding site mE1_TFBS_sens
3L	10732798	3L_10732798_SNP [dm3] 3L_10739698_SNP [dm6]	A	T	1.366e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	27352795	3R_27352795_SNP [dm3] 3R_31527073_SNP [dm6]	T	G	1.377e^-4	0.733	INTERGENIC
3L	11199015	3L_11199015_SNP [dm3] 3L_11205915_SNP [dm6]	G	A	1.378e^-4	0.733	UTR_5_PRIME Plod DOWNSTREAM Ube3a INTRON Plod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	20619226	2L_20619226_SNP [dm3] 2L_20619226_SNP [dm6]	G	T	1.379e^-4	0.733	UPSTREAM mir-288 INTRON CR44909
3L	10964272	3L_10964272_SNP [dm3] 3L_10971172_SNP [dm6]	C	T	1.388e^-4	0.733	INTERGENIC
3R	10197407	3R_10197407_SNP [dm3] 3R_14371685_SNP [dm6]	T	C	1.388e^-4	0.733	INTRON NK7.1 EXON snoRNA:Me18S-G1189
X	2439180	X_2439180_SNP [dm3] X_2545147_SNP [dm6]	A	T	1.388e^-4	0.733	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14769466	3L_14769466_SNP [dm3] 3L_14776366_SNP [dm6]	A	G	1.394e^-4	0.733	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	877683	3L_877683_INS [dm3] 3L_877683_INS [dm6]	T	TT	1.398e^-4	0.733	UTR_3_PRIME CG13907 INTRON CG32479
3L	8955985	3L_8955985_SNP [dm3] 3L_8962885_SNP [dm6]	A	T	1.399e^-4	0.733	SYNONYMOUS_CODING CG5660
3L	3787061	3L_3787061_SNP [dm3] 3L_3787061_SNP [dm6]	T	A	1.400e^-4	0.733	INTRON CG32264	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7074085	3L_7074085_SNP [dm3] 3L_7080985_SNP [dm6]	T	G	1.402e^-4	0.733	INTERGENIC
3L	21064722	3L_21064722_SNP [dm3] 3L_21071622_SNP [dm6]	T	A	1.410e^-4	0.733	INTRON siz	TF binding site BDTNP1_TFBS_dl
3L	2004969	3L_2004969_SNP [dm3] 3L_2004969_SNP [dm6]	C	A	1.413e^-4	0.733	DOWNSTREAM CG42841 INTRON CG42841
3R	15616986	3R_15616986_SNP [dm3] 3R_19791264_SNP [dm6]	T	C	1.413e^-4	0.733	DOWNSTREAM tRNA:CR31215 INTERGENIC	TF binding site mE1_TFBS_cad
X	1665180	X_1665180_SNP [dm3] X_1771147_SNP [dm6]	C	G	1.415e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10416110	3R_10416110_SNP [dm3] 3R_14590388_SNP [dm6]	G	A	1.416e^-4	0.733	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14769427	3L_14769427_SNP [dm3] 3L_14776327_SNP [dm6]	G	A	1.417e^-4	0.733	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1849076	3L_1849076_INS [dm3] 3L_1849076_INS [dm6]	T	TATCCACT	1.420e^-4	0.733	INTERGENIC
3R	25802494	3R_25802494_SNP [dm3] 3R_29976772_SNP [dm6]	C	T	1.430e^-4	0.733	INTERGENIC
3R	10416109	3R_10416109_SNP [dm3] 3R_14590387_SNP [dm6]	T	A	1.432e^-4	0.733	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25149803	3R_25149803_SNP [dm3] 3R_29324081_SNP [dm6]	A	C	1.435e^-4	0.733	INTERGENIC
3L	8961501	3L_8961501_SNP [dm3] 3L_8968401_SNP [dm6]	C	G	1.435e^-4	0.733	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
2L	10937122	2L_10937122_SNP [dm3] 2L_10937122_SNP [dm6]	T	C	1.435e^-4	0.733	UTR_5_PRIME CG14072 UPSTREAM CG14072 INTRON dpr2
2R	12550839	2R_12550839_SNP [dm3] 2R_16663334_SNP [dm6]	C	T	1.454e^-4	0.733	INTRON Picot
3L	6001845	3L_6001845_SNP [dm3] 3L_6008745_SNP [dm6]	G	T	1.455e^-4	0.733	DOWNSTREAM alphaKap4 INTRON PVRAP
2L	4265546	2L_4265546_DEL [dm3] 2L_4265546_DEL [dm6]	TCTAGAGAGTCATGTTCAAG...	G	1.457e^-4	0.733	INTERGENIC
2R	16251885	2R_16251885_SNP [dm3] 2R_20364380_SNP [dm6]	T	G	1.457e^-4	0.733	INTERGENIC
3L	10956803	3L_10956803_SNP [dm3] 3L_10963703_SNP [dm6]	A	C	1.460e^-4	0.733	INTERGENIC
X	8112007	X_8112007_SNP [dm3] X_8217974_SNP [dm6]	G	A	1.465e^-4	0.733	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2R	12537473	2R_12537473_SNP [dm3] 2R_16649968_SNP [dm6]	T	C	1.470e^-4	0.733	UTR_3_PRIME gprs INTRON gprs
3L	10964268	3L_10964268_INS [dm3] 3L_10971168_INS [dm6]	C	CACCCC	1.470e^-4	0.733	INTERGENIC
X	2980103	X_2980103_DEL [dm3] X_3086070_DEL [dm6]	TT	T	1.471e^-4	0.733	INTRON kirre
X	1676778	X_1676778_SNP [dm3] X_1782745_SNP [dm6]	A	C	1.472e^-4	0.733	INTRON CG42666 & 1 other
4	96142	4_96142_SNP [dm3] 4_75516_SNP [dm6]	T	A	1.473e^-4	0.733	INTRON pan	transposable element FlyBase
3R	26034383	3R_26034383_SNP [dm3] 3R_30208661_SNP [dm6]	C	G	1.474e^-4	0.733	SPLICE_SITE_REGION RpS7 UTR_5_PRIME RpS7 UPSTREAM snoRNA:Psi18S-1377a & 1 other INTRON RpS7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18653057	3L_18653057_SNP [dm3] 3L_18659957_SNP [dm6]	C	T	1.479e^-4	0.733	INTRON MYPT-75D
X	2867454	X_2867454_SNP [dm3] X_2973421_SNP [dm6]	T	A	1.485e^-4	0.733	UTR_5_PRIME rst INTRON kirre	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	16366400	X_16366400_SNP [dm3] X_16472367_SNP [dm6]	A	G	1.490e^-4	0.733	INTRON para	TF binding site BDTNP1_TFBS_dl
X	19080484	X_19080484_SNP [dm3] X_19186451_SNP [dm6]	A	T	1.491e^-4	0.733	SPLICE_SITE_REGION CG33253 INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9196736	X_9196736_SNP [dm3] X_9302703_SNP [dm6]	C	T	1.494e^-4	0.733	SYNONYMOUS_CODING lz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	14600666	3L_14600666_SNP [dm3] 3L_14607566_SNP [dm6]	C	T	1.498e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	6453811	2R_6453811_SNP [dm3] 2R_10566306_SNP [dm6]	T	C	1.499e^-4	0.733	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	6291139	3L_6291139_SNP [dm3] 3L_6298039_SNP [dm6]	T	A	1.504e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11360866	3L_11360866_INS [dm3] 3L_11367766_INS [dm6]	A	ATATATA	1.506e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2005028	3L_2005028_SNP [dm3] 3L_2005028_SNP [dm6]	T	C	1.506e^-4	0.733	DOWNSTREAM CG42841 INTRON CG42841
3L	11198131	3L_11198131_SNP [dm3] 3L_11205031_SNP [dm6]	T	G	1.510e^-4	0.733	INTRON Plod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18090533	3L_18090533_SNP [dm3] 3L_18097433_SNP [dm6]	C	T	1.511e^-4	0.733	INTRON CG13698
2L	5778340	2L_5778340_SNP [dm3] 2L_5778340_SNP [dm6]	T	C	1.512e^-4	0.733	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3134278	3L_3134278_SNP [dm3] 3L_3134278_SNP [dm6]	C	T	1.513e^-4	0.733	UPSTREAM CG11537 INTRON CG11537
3L	8961459	3L_8961459_SNP [dm3] 3L_8968359_SNP [dm6]	G	A	1.520e^-4	0.733	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3L	10985657	3L_10985657_INS [dm3] 3L_10992557_INS [dm6]	A	AAAA	1.524e^-4	0.733	INTRON klu
3L	3634192	3L_3634192_SNP [dm3] 3L_3634192_SNP [dm6]	A	G	1.524e^-4	0.733	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8809578	3L_8809578_SNP [dm3] 3L_8816478_SNP [dm6]	T	A	1.538e^-4	0.738	INTERGENIC
X	2439821	X_2439821_SNP [dm3] X_2545788_SNP [dm6]	C	A	1.545e^-4	0.739	UPSTREAM mir-4955 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	11323140	X_11323140_SNP [dm3] X_11429107_SNP [dm6]	C	T	1.578e^-4	0.751	SYNONYMOUS_CODING Gs2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16016249	3L_16016249_SNP [dm3] 3L_16023149_SNP [dm6]	A	T	1.578e^-4	0.751	UPSTREAM Notum INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3314627	2R_3314627_SNP [dm3] 2R_7427122_SNP [dm6]	G	T	1.599e^-4	0.757	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1026068	3L_1026068_SNP [dm3] 3L_1026068_SNP [dm6]	G	A	1.599e^-4	0.757	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8961549	3L_8961549_SNP [dm3] 3L_8968449_SNP [dm6]	T	G	1.607e^-4	0.757	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3L	10549183	3L_10549183_SNP [dm3] 3L_10556083_SNP [dm6]	T	G	1.609e^-4	0.757	DOWNSTREAM CG6527 INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	10966677	3L_10966677_SNP [dm3] 3L_10973577_SNP [dm6]	G	A	1.610e^-4	0.757	DOWNSTREAM CG14147 INTERGENIC
2R	12701691	2R_12701691_SNP [dm3] 2R_16814186_SNP [dm6]	T	C	1.624e^-4	0.759	DOWNSTREAM CR44380 INTERGENIC
3R	4270817	3R_4270817_SNP [dm3] 3R_8445095_SNP [dm6]	A	T	1.630e^-4	0.759	INTRON CG45263
3L	6002736	3L_6002736_SNP [dm3] 3L_6009636_SNP [dm6]	G	T	1.630e^-4	0.759	NON_SYNONYMOUS_CODING alphaKap4 INTRON PVRAP
2L	2656145	2L_2656145_SNP [dm3] 2L_2656145_SNP [dm6]	G	C	1.637e^-4	0.759	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
X	5704112	X_5704112_SNP [dm3] X_5810079_SNP [dm6]	G	A	1.653e^-4	0.759	UTR_3_PRIME Prosbeta2R1 UPSTREAM CR45529
3L	6972990	3L_6972990_INS [dm3] 3L_6979890_INS [dm6]	T	TTT	1.655e^-4	0.759	UTR_5_PRIME Galphai DOWNSTREAM CR32385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9665579	2L_9665579_SNP [dm3] 2L_9665579_SNP [dm6]	A	T	1.657e^-4	0.759	INTERGENIC
3L	1294940	3L_1294940_SNP [dm3] 3L_1294940_SNP [dm6]	C	T	1.658e^-4	0.759	UTR_3_PRIME CG32333 UPSTREAM Rabex-5 DOWNSTREAM CG32333	TF binding site BDTNP1_TFBS_dl
2R	11059071	2R_11059071_SNP [dm3] 2R_15171566_SNP [dm6]	A	G	1.659e^-4	0.759	INTRON igl
3L	9032453	3L_9032453_SNP [dm3] 3L_9039353_SNP [dm6]	C	G	1.660e^-4	0.759	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12537448	2R_12537448_SNP [dm3] 2R_16649943_SNP [dm6]	C	T	1.662e^-4	0.759	UTR_3_PRIME gprs INTRON gprs
2R	9162187	2R_9162187_SNP [dm3] 2R_13274682_SNP [dm6]	C	A	1.663e^-4	0.759	INTRON Dh31-R
2L	19112964	2L_19112964_SNP [dm3] 2L_19112964_SNP [dm6]	A	G	1.684e^-4	0.764	SYNONYMOUS_CODING amd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14769471	3L_14769471_SNP [dm3] 3L_14776371_SNP [dm6]	T	C	1.685e^-4	0.764	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11178869	3L_11178869_SNP [dm3] 3L_11185769_SNP [dm6]	T	C	1.686e^-4	0.764	INTRON GlcAT-P
2L	9489771	2L_9489771_SNP [dm3] 2L_9489771_SNP [dm6]	C	T	1.693e^-4	0.764	INTERGENIC
3L	8804323	3L_8804323_SNP [dm3] 3L_8811223_SNP [dm6]	G	A	1.696e^-4	0.764	UTR_3_PRIME CG13309	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10209504	3L_10209504_SNP [dm3] 3L_10216404_SNP [dm6]	C	T	1.700e^-4	0.764	SYNONYMOUS_CODING CG8065
X	11525090	X_11525090_INS [dm3] X_11631057_INS [dm6]	A	AA	1.709e^-4	0.764	INTRON Ptp10D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5869791	X_5869791_SNP [dm3] X_5975758_SNP [dm6]	G	T	1.715e^-4	0.764	INTRON Grip
3L	5181386	3L_5181386_SNP [dm3] 3L_5188286_SNP [dm6]	G	A	1.718e^-4	0.764	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14837655	2R_14837655_SNP [dm3] 2R_18950150_SNP [dm6]	A	T	1.719e^-4	0.764	INTRON sano
3L	3951050	3L_3951050_SNP [dm3] 3L_3951050_SNP [dm6]	C	T	1.727e^-4	0.764	DOWNSTREAM CG14984 INTERGENIC
3L	8852203	3L_8852203_SNP [dm3] 3L_8859103_SNP [dm6]	T	C	1.728e^-4	0.764	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16524233	X_16524233_SNP [dm3] X_16630200_SNP [dm6]	G	A	1.735e^-4	0.764	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22936917	3R_22936917_SNP [dm3] 3R_27111195_SNP [dm6]	G	C	1.735e^-4	0.764	DOWNSTREAM CR45209 INTRON gb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14596272	3L_14596272_SNP [dm3] 3L_14603172_SNP [dm6]	T	A	1.736e^-4	0.764	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8687942	3L_8687942_SNP [dm3] 3L_8694842_SNP [dm6]	C	G	1.739e^-4	0.764	INTERGENIC
3L	8960356	3L_8960356_SNP [dm3] 3L_8967256_SNP [dm6]	C	T	1.765e^-4	0.766	UPSTREAM CG5653 INTRON CG5021	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1849393	3L_1849393_SNP [dm3] 3L_1849393_SNP [dm6]	C	G	1.771e^-4	0.766	INTERGENIC
2L	10044717	2L_10044717_SNP [dm3] 2L_10044717_SNP [dm6]	T	A	1.771e^-4	0.766	INTERGENIC
2R	7483082	2R_7483082_SNP [dm3] 2R_11595577_SNP [dm6]	C	G	1.784e^-4	0.766	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16414261	3R_16414261_SNP [dm3] 3R_20588539_SNP [dm6]	T	C	1.787e^-4	0.766	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8962739	3L_8962739_SNP [dm3] 3L_8969639_SNP [dm6]	G	C	1.787e^-4	0.766	SYNONYMOUS_CODING CG5026	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14594211	3L_14594211_SNP [dm3] 3L_14601111_SNP [dm6]	T	C	1.794e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10405444	2L_10405444_SNP [dm3] 2L_10405444_SNP [dm6]	T	C	1.799e^-4	0.766	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	24027266	3R_24027266_SNP [dm3] 3R_28201544_SNP [dm6]	A	T	1.799e^-4	0.766	INTRON CG34354
X	19080520	X_19080520_SNP [dm3] X_19186487_SNP [dm6]	G	A	1.801e^-4	0.766	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1682700	X_1682700_SNP [dm3] X_1788667_SNP [dm6]	C	G	1.803e^-4	0.766	UTR_5_PRIME CG42666 UPSTREAM CG32806 DOWNSTREAM mir-981 & 1 other
3L	10733004	3L_10733004_SNP [dm3] 3L_10739904_SNP [dm6]	G	C	1.804e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	11198153	3L_11198153_SNP [dm3] 3L_11205053_SNP [dm6]	G	T	1.810e^-4	0.766	INTRON Plod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	610224	3L_610224_INS [dm3] 3L_610224_INS [dm6]	A	ATGCGGAACAGCA...	1.810e^-4	0.766	UPSTREAM CR44513 INTERGENIC
X	19300276	X_19300276_SNP [dm3] X_19406243_SNP [dm6]	A	T	1.812e^-4	0.766	INTRON kek5
3L	8965514	3L_8965514_SNP [dm3] 3L_8972414_SNP [dm6]	A	G	1.820e^-4	0.766	SYNONYMOUS_CODING pix DOWNSTREAM CG5026
3L	3261003	3L_3261003_SNP [dm3] 3L_3261003_SNP [dm6]	T	C	1.831e^-4	0.766	INTRON ckd
2L	11322363	2L_11322363_SNP [dm3] 2L_11322363_SNP [dm6]	C	A	1.833e^-4	0.766	INTERGENIC
2R	10816187	2R_10816187_SNP [dm3] 2R_14928682_SNP [dm6]	C	T	1.833e^-4	0.766	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	8797316	3L_8797316_SNP [dm3] 3L_8804216_SNP [dm6]	G	A	1.834e^-4	0.766	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
X	19938112	X_19938112_SNP [dm3] X_20044079_SNP [dm6]	T	A	1.836e^-4	0.766	INTRON Dop2R
3R	3880837	3R_3880837_SNP [dm3] 3R_8055115_SNP [dm6]	T	C	1.842e^-4	0.766	INTRON CG43060
2R	7636119	2R_7636119_INS [dm3] 2R_11748614_INS [dm6]	T	TTT	1.843e^-4	0.766	INTERGENIC
3L	15569448	3L_15569448_SNP [dm3] 3L_15576348_SNP [dm6]	G	A	1.850e^-4	0.766	UPSTREAM CG16979 DOWNSTREAM CG6498 INTERGENIC
3L	12784356	3L_12784356_SNP [dm3] 3L_12791256_SNP [dm6]	G	A	1.854e^-4	0.766	UTR_5_PRIME CG42709 INTRON Atg1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4314026	3L_4314026_SNP [dm3] 3L_4314026_SNP [dm6]	G	A	1.858e^-4	0.766	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	4314166	3L_4314166_SNP [dm3] 3L_4314166_SNP [dm6]	C	T	1.858e^-4	0.766	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	7248375	3L_7248375_SNP [dm3] 3L_7255275_SNP [dm6]	C	G	1.863e^-4	0.766	INTRON CG14830
3R	26368983	3R_26368983_SNP [dm3] 3R_30543261_SNP [dm6]	C	A	1.870e^-4	0.766	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10264263	2L_10264263_SNP [dm3] 2L_10264263_SNP [dm6]	T	C	1.884e^-4	0.766	NON_SYNONYMOUS_CODING CG18619 SPLICE_SITE_REGION CG18619 UPSTREAM Rsf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6020660	3L_6020660_SNP [dm3] 3L_6027560_SNP [dm6]	A	T	1.884e^-4	0.766	INTERGENIC
3L	3171705	3L_3171705_SNP [dm3] 3L_3171705_SNP [dm6]	G	A	1.884e^-4	0.766	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
4	544370	4_544370_SNP [dm3] 4_523744_SNP [dm6]	T	G	1.885e^-4	0.766	INTRON zfh2
3L	8804307	3L_8804307_SNP [dm3] 3L_8811207_SNP [dm6]	T	C	1.900e^-4	0.766	UTR_3_PRIME CG13309	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25805360	3R_25805360_SNP [dm3] 3R_29979638_SNP [dm6]	G	T	1.903e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17026191	X_17026191_DEL [dm3] X_17132158_DEL [dm6]	TT	T	1.909e^-4	0.766	INTRON CG5004
2L	10264379	2L_10264379_SNP [dm3] 2L_10264379_SNP [dm6]	C	T	1.911e^-4	0.766	UPSTREAM Rsf1 & 1 other INTRON CG18619	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15286762	3L_15286762_SNP [dm3] 3L_15293662_SNP [dm6]	C	T	1.922e^-4	0.766	INTERGENIC
3R	1604940	3R_1604940_SNP [dm3] 3R_5779218_SNP [dm6]	C	T	1.922e^-4	0.766	UPSTREAM jagn INTRON CG2082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
4	125658	4_125658_SNP [dm3] 4_105032_SNP [dm6]	C	T	1.927e^-4	0.766	INTRON pan
2L	2656258	2L_2656258_SNP [dm3] 2L_2656258_SNP [dm6]	G	T	1.928e^-4	0.766	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a & 1 other
2L	10263681	2L_10263681_SNP [dm3] 2L_10263681_SNP [dm6]	G	A	1.939e^-4	0.766	UPSTREAM CG18619 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2010395	3L_2010395_SNP [dm3] 3L_2010395_SNP [dm6]	G	A	1.939e^-4	0.766	EXON CR44535
2L	11322310	2L_11322310_SNP [dm3] 2L_11322310_SNP [dm6]	A	T	1.942e^-4	0.766	INTERGENIC
3L	3171684	3L_3171684_SNP [dm3] 3L_3171684_SNP [dm6]	G	C	1.947e^-4	0.766	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
3L	3171727	3L_3171727_SNP [dm3] 3L_3171727_SNP [dm6]	G	C	1.947e^-4	0.766	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
3L	14584450	3L_14584450_SNP [dm3] 3L_14591350_SNP [dm6]	G	C	1.947e^-4	0.766	INTRON HGTX
3L	14596304	3L_14596304_SNP [dm3] 3L_14603204_SNP [dm6]	T	C	1.958e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_Kr
X	2947586	X_2947586_DEL [dm3] X_3053553_DEL [dm6]	TTGTATCT	T	1.960e^-4	0.766	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5651442	2L_5651442_SNP [dm3] 2L_5651442_SNP [dm6]	A	C	1.962e^-4	0.766	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8835248	2R_8835248_SNP [dm3] 2R_12947743_SNP [dm6]	A	T	1.969e^-4	0.766	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14116537	X_14116537_SNP [dm3] X_14222504_SNP [dm6]	G	A	1.974e^-4	0.766	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	15137459	3R_15137459_SNP [dm3] 3R_19311737_SNP [dm6]	C	A	1.974e^-4	0.766	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16873137	3R_16873137_SNP [dm3] 3R_21047415_SNP [dm6]	T	A	1.982e^-4	0.766	UPSTREAM CG31207 DOWNSTREAM CG7079 INTERGENIC
3R	24027099	3R_24027099_SNP [dm3] 3R_28201377_SNP [dm6]	C	A	1.983e^-4	0.766	INTRON CG34354
2R	17588801	2R_17588801_SNP [dm3] 2R_21701296_SNP [dm6]	C	G	1.985e^-4	0.766	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3L	12198516	3L_12198516_SNP [dm3] 3L_12205416_SNP [dm6]	T	A	1.985e^-4	0.766	SYNONYMOUS_CODING CG5626 DOWNSTREAM app
X	1684235	X_1684235_SNP [dm3] X_1790202_SNP [dm6]	G	T	1.986e^-4	0.766	NON_SYNONYMOUS_CODING CG32806 INTRON CG42666
X	14116553	X_14116553_SNP [dm3] X_14222520_SNP [dm6]	T	A	1.990e^-4	0.766	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	23370617	3R_23370617_SNP [dm3] 3R_27544895_SNP [dm6]	T	C	1.995e^-4	0.766	SYNONYMOUS_CODING Gr98c
2R	6915158	2R_6915158_SNP [dm3] 2R_11027653_SNP [dm6]	A	T	2.000e^-4	0.766	INTRON luna
3R	24027236	3R_24027236_SNP [dm3] 3R_28201514_SNP [dm6]	T	A	2.000e^-4	0.766	INTRON CG34354
3R	3570137	3R_3570137_SNP [dm3] 3R_7744415_SNP [dm6]	C	T	2.001e^-4	0.766	INTERGENIC
2R	12550546	2R_12550546_SNP [dm3] 2R_16663041_SNP [dm6]	G	A	2.005e^-4	0.766	INTRON Picot
X	18878027	X_18878027_SNP [dm3] X_18983994_SNP [dm6]	T	C	2.013e^-4	0.767	INTRON CG43759
3L	11195179	3L_11195179_SNP [dm3] 3L_11202079_SNP [dm6]	A	G	2.015e^-4	0.767	UTR_3_PRIME CG14141 INTRON Plod
3L	8832809	3L_8832809_SNP [dm3] 3L_8839709_SNP [dm6]	G	A	2.021e^-4	0.767	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7248834	3L_7248834_SNP [dm3] 3L_7255734_SNP [dm6]	G	A	2.034e^-4	0.768	INTRON CG14830
2R	5332062	2R_5332062_SNP [dm3] 2R_9444557_SNP [dm6]	C	G	2.051e^-4	0.768	DOWNSTREAM CR45321 INTRON ced-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9756121	2R_9756121_SNP [dm3] 2R_13868616_SNP [dm6]	G	T	2.052e^-4	0.768	INTRON shot
3L	4314131	3L_4314131_SNP [dm3] 3L_4314131_SNP [dm6]	C	A	2.055e^-4	0.768	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	11367295	3L_11367295_SNP [dm3] 3L_11374195_SNP [dm6]	G	A	2.057e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5999070	3L_5999070_SNP [dm3] 3L_6005970_SNP [dm6]	C	T	2.062e^-4	0.768	INTRON PVRAP
3L	22835296	3L_22835296_SNP [dm3] 3L_22842196_SNP [dm6]	A	G	2.064e^-4	0.768	DOWNSTREAM CR45659 INTERGENIC
3L	1294618	3L_1294618_SNP [dm3] 3L_1294618_SNP [dm6]	G	A	2.065e^-4	0.768	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
2R	13511329	2R_13511329_SNP [dm3] 2R_17623824_SNP [dm6]	G	A	2.066e^-4	0.768	INTRON CG10936	TF binding site mE1_TFBS_sens
2L	20619169	2L_20619169_SNP [dm3] 2L_20619169_SNP [dm6]	G	A	2.082e^-4	0.768	UPSTREAM mir-288 INTRON CR44909
X	3331906	X_3331906_SNP [dm3] X_3437873_SNP [dm6]	C	T	2.088e^-4	0.768	INTRON CR44999 & 1 other
3L	7073922	3L_7073922_SNP [dm3] 3L_7080822_SNP [dm6]	T	G	2.091e^-4	0.768	INTERGENIC
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	2.104e^-4	0.768	INTERGENIC
2L	17224872	2L_17224872_SNP [dm3] 2L_17224872_SNP [dm6]	G	A	2.106e^-4	0.768	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2865639	X_2865639_DEL [dm3] X_2971606_DEL [dm6]	CAC	C	2.108e^-4	0.768	INTRON kirre & 1 other
3R	24087677	3R_24087677_SNP [dm3] 3R_28261955_SNP [dm6]	G	A	2.108e^-4	0.768	DOWNSTREAM CG43125 INTERGENIC
3R	2704349	3R_2704349_SNP [dm3] 3R_6878627_SNP [dm6]	A	C	2.113e^-4	0.768	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	17369389	X_17369389_SNP [dm3] X_17475356_SNP [dm6]	T	G	2.115e^-4	0.768	SPLICE_SITE_ACCEPTOR CG43658 INTRON CG43658
3L	3887608	3L_3887608_SNP [dm3] 3L_3887608_SNP [dm6]	A	G	2.117e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4314041	3L_4314041_INS [dm3] 3L_4314041_INS [dm6]	A	AGAA	2.130e^-4	0.768		TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15286779	3L_15286779_SNP [dm3] 3L_15293679_SNP [dm6]	C	T	2.135e^-4	0.768	INTERGENIC
2L	6981707	2L_6981707_DEL [dm3] 2L_6981707_DEL [dm6]	TTCGTTGTT	T	2.138e^-4	0.768	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1663717	X_1663717_SNP [dm3] X_1769684_SNP [dm6]	C	A	2.143e^-4	0.768	INTERGENIC
3L	850689	3L_850689_SNP [dm3] 3L_850689_SNP [dm6]	G	A	2.145e^-4	0.768	SYNONYMOUS_CODING CG13889 UPSTREAM CG13890	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10728405	3L_10728405_MNP [dm3] 3L_10735305_MNP [dm6]	TGT	AAG	2.146e^-4	0.768	INTERGENIC
X	7147097	X_7147097_SNP [dm3] X_7253064_SNP [dm6]	C	T	2.149e^-4	0.768	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	8832925	3L_8832925_SNP [dm3] 3L_8839825_SNP [dm6]	G	A	2.150e^-4	0.768	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2439817	X_2439817_SNP [dm3] X_2545784_SNP [dm6]	G	A	2.151e^-4	0.768	UPSTREAM mir-4955 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5904486	3L_5904486_DEL [dm3] 3L_5911386_DEL [dm6]	AA	A	2.153e^-4	0.768	INTRON CG13288
3L	14769462	3L_14769462_SNP [dm3] 3L_14776362_SNP [dm6]	A	G	2.154e^-4	0.768	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16842500	3R_16842500_SNP [dm3] 3R_21016778_SNP [dm6]	T	C	2.157e^-4	0.768	UTR_3_PRIME CG5697 UPSTREAM Rlip	TF binding site mE1_TFBS_cad
X	11322294	X_11322294_SNP [dm3] X_11428261_SNP [dm6]	A	G	2.159e^-4	0.768	INTRON Gs2
3L	9034791	3L_9034791_SNP [dm3] 3L_9041691_SNP [dm6]	C	T	2.162e^-4	0.768	UPSTREAM Doc1 INTRON Doc1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13932204	X_13932204_SNP [dm3] X_14038171_SNP [dm6]	A	G	2.174e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14116554	X_14116554_SNP [dm3] X_14222521_SNP [dm6]	G	C	2.174e^-4	0.768	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3L	8552141	3L_8552141_SNP [dm3] 3L_8559041_SNP [dm6]	C	T	2.175e^-4	0.768	INTRON rhea
X	1665093	X_1665093_SNP [dm3] X_1771060_SNP [dm6]	A	G	2.178e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10405275	2L_10405275_SNP [dm3] 2L_10405275_SNP [dm6]	T	A	2.182e^-4	0.768	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13777245	3L_13777245_SNP [dm3] 3L_13784145_SNP [dm6]	T	C	2.185e^-4	0.768	INTRON bru-3
2L	6280767	2L_6280767_SNP [dm3] 2L_6280767_SNP [dm6]	A	T	2.187e^-4	0.768	INTRON Ddr
3R	6541715	3R_6541715_SNP [dm3] 3R_10715993_SNP [dm6]	A	G	2.205e^-4	0.772	DOWNSTREAM CG4073 INTERGENIC
3L	1026149	3L_1026149_SNP [dm3] 3L_1026149_SNP [dm6]	G	T	2.205e^-4	0.772	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2005280	3L_2005280_SNP [dm3] 3L_2005280_SNP [dm6]	C	T	2.210e^-4	0.772	UTR_3_PRIME CG42841
2L	7653662	2L_7653662_SNP [dm3] 2L_7653662_SNP [dm6]	G	A	2.214e^-4	0.772	INTRON Slob
3L	19386622	3L_19386622_SNP [dm3] 3L_19393522_SNP [dm6]	C	A	2.219e^-4	0.772	INTRON CG32206
3L	19417853	3L_19417853_SNP [dm3] 3L_19424753_SNP [dm6]	T	A	2.226e^-4	0.772	UPSTREAM CR32205 DOWNSTREAM CG33255 EXON CR42838
3R	23370683	3R_23370683_SNP [dm3] 3R_27544961_SNP [dm6]	T	C	2.243e^-4	0.772	SYNONYMOUS_CODING Gr98c
3L	3169837	3L_3169837_SNP [dm3] 3L_3169837_SNP [dm6]	G	A	2.243e^-4	0.772	SYNONYMOUS_CODING CG32281 DOWNSTREAM CG32280 INTRON CG32278	TF binding site mE1_TFBS_sens
X	16366037	X_16366037_SNP [dm3] X_16472004_SNP [dm6]	C	T	2.248e^-4	0.772	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	125657	4_125657_SNP [dm3] 4_105031_SNP [dm6]	A	G	2.249e^-4	0.772	INTRON pan
2R	3898667	2R_3898667_SNP [dm3] 2R_8011162_SNP [dm6]	T	C	2.249e^-4	0.772	INTRON CG14762	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20341822	X_20341822_SNP [dm3] X_20470795_SNP [dm6]	A	T	2.254e^-4	0.772	UTR_3_PRIME RhoGAP19D DOWNSTREAM GstT3 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	12705121	2R_12705121_SNP [dm3] 2R_16817616_SNP [dm6]	G	T	2.255e^-4	0.772	DOWNSTREAM CG5550 EXON CR43417
X	2439818	X_2439818_INS [dm3] X_2545785_INS [dm6]	T	TT	2.257e^-4	0.772	UPSTREAM mir-4955 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18424920	3R_18424920_SNP [dm3] 3R_22599198_SNP [dm6]	C	A	2.268e^-4	0.774	INTRON Efa6	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17308459	X_17308459_SNP [dm3] X_17414426_SNP [dm6]	G	A	2.271e^-4	0.774	SYNONYMOUS_CODING CG8611 UTR_3_PRIME CG8611
3L	5069441	3L_5069441_SNP [dm3] 3L_5069441_SNP [dm6]	A	C	2.287e^-4	0.776	INTRON Con
3L	11618874	3L_11618874_SNP [dm3] 3L_11625774_SNP [dm6]	A	T	2.294e^-4	0.776	UPSTREAM PCID2 INTRON CG6083
3L	9132397	3L_9132397_SNP [dm3] 3L_9139297_SNP [dm6]	T	C	2.295e^-4	0.776	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_sens
3L	4314097	3L_4314097_SNP [dm3] 3L_4314097_SNP [dm6]	T	C	2.300e^-4	0.776	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14593969	3L_14593969_SNP [dm3] 3L_14600869_SNP [dm6]	T	A	2.302e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732926	3L_10732926_SNP [dm3] 3L_10739826_SNP [dm6]	T	C	2.318e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10732927	3L_10732927_INS [dm3] 3L_10739827_INS [dm6]	A	AAACATAAGT	2.318e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10579798	3L_10579798_SNP [dm3] 3L_10586698_SNP [dm6]	C	A	2.319e^-4	0.776	INTRON A2bp1
X	579404	X_579404_INS [dm3] X_685371_INS [dm6]	T	TATATATTTATATTTATTTA...	2.320e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5651363	2L_5651363_SNP [dm3] 2L_5651363_SNP [dm6]	T	C	2.322e^-4	0.776	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2004982	3L_2004982_SNP [dm3] 3L_2004982_SNP [dm6]	G	T	2.324e^-4	0.776	DOWNSTREAM CG42841 INTRON CG42841
2L	19110381	2L_19110381_SNP [dm3] 2L_19110381_SNP [dm6]	A	T	2.327e^-4	0.776	DOWNSTREAM CR44905 INTRON amd
3L	8961395	3L_8961395_SNP [dm3] 3L_8968295_SNP [dm6]	T	A	2.330e^-4	0.776	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3L	8684668	3L_8684668_SNP [dm3] 3L_8691568_SNP [dm6]	G	T	2.341e^-4	0.776	INTERGENIC
2L	6769810	2L_6769810_SNP [dm3] 2L_6769810_SNP [dm6]	C	T	2.345e^-4	0.776	DOWNSTREAM CG11321 INTRON CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15468971	2L_15468971_SNP [dm3] 2L_15468971_SNP [dm6]	T	C	2.346e^-4	0.776	EXON CR45353
3R	2872676	3R_2872676_SNP [dm3] 3R_7046954_SNP [dm6]	A	C	2.347e^-4	0.776	INTERGENIC
3L	13778413	3L_13778413_SNP [dm3] 3L_13785313_SNP [dm6]	T	A	2.353e^-4	0.777	INTRON bru-3
2L	3457390	2L_3457390_SNP [dm3] 2L_3457390_SNP [dm6]	C	G	2.358e^-4	0.777	UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14587972	3L_14587972_DEL [dm3] 3L_14594872_DEL [dm6]	TCT	T	2.361e^-4	0.777	INTRON HGTX	TF binding site mE1_TFBS_cnc
3L	875160	3L_875160_SNP [dm3] 3L_875160_SNP [dm6]	C	T	2.393e^-4	0.781	NON_SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad
3R	26865959	3R_26865959_SNP [dm3] 3R_31040237_SNP [dm6]	G	C	2.396e^-4	0.781	SYNONYMOUS_CODING CanA1
X	1669398	X_1669398_DEL [dm3] X_1775365_DEL [dm6]	CATAC	C	2.400e^-4	0.781	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20682919	X_20682919_SNP [dm3] X_20811892_SNP [dm6]	C	A	2.401e^-4	0.781	INTRON shakB
3L	6021421	3L_6021421_SNP [dm3] 3L_6028321_SNP [dm6]	G	A	2.402e^-4	0.781	INTERGENIC
X	1664234	X_1664234_SNP [dm3] X_1770201_SNP [dm6]	A	G	2.411e^-4	0.781	INTERGENIC
3L	10786885	3L_10786885_SNP [dm3] 3L_10793785_SNP [dm6]	G	A	2.428e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9108333	2R_9108333_SNP [dm3] 2R_13220828_SNP [dm6]	T	C	2.429e^-4	0.781	SYNONYMOUS_CODING CG17059 UPSTREAM CG4646 DOWNSTREAM Fsn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	14599081	3L_14599081_SNP [dm3] 3L_14605981_SNP [dm6]	C	T	2.430e^-4	0.781	INTERGENIC
3R	27418932	3R_27418932_SNP [dm3] 3R_31593210_SNP [dm6]	A	T	2.433e^-4	0.781	NON_SYNONYMOUS_CODING CG1774 DOWNSTREAM CG1638
X	18453703	X_18453703_SNP [dm3] X_18559670_SNP [dm6]	C	T	2.434e^-4	0.781	INTRON Bx
3L	18651484	3L_18651484_SNP [dm3] 3L_18658384_SNP [dm6]	T	C	2.437e^-4	0.781	INTRON MYPT-75D
2L	15468999	2L_15468999_SNP [dm3] 2L_15468999_SNP [dm6]	C	T	2.441e^-4	0.781	EXON CR45353
X	3542789	X_3542789_SNP [dm3] X_3648756_SNP [dm6]	C	T	2.447e^-4	0.781	INTRON AstA-R1
X	20414008	X_20414008_SNP [dm3] X_20542981_SNP [dm6]	G	A	2.450e^-4	0.781	INTRON RunxB
3L	2849016	3L_2849016_SNP [dm3] 3L_2849016_SNP [dm6]	A	T	2.453e^-4	0.781	INTRON CG43444	TF binding site mE1_TFBS_cad
2L	6058701	2L_6058701_SNP [dm3] 2L_6058701_SNP [dm6]	C	A	2.458e^-4	0.781	INTRON CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9805499	3L_9805499_SNP [dm3] 3L_9812399_SNP [dm6]	T	G	2.459e^-4	0.781	INTERGENIC
X	14368122	X_14368122_SNP [dm3] X_14474089_SNP [dm6]	G	A	2.461e^-4	0.781	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8852263	3L_8852263_INS [dm3] 3L_8859163_INS [dm6]	T	TTGAATTT	2.464e^-4	0.781	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	13511208	2R_13511208_SNP [dm3] 2R_17623703_SNP [dm6]	A	G	2.474e^-4	0.781	INTRON CG10936
X	9735884	X_9735884_SNP [dm3] X_9841851_SNP [dm6]	T	G	2.478e^-4	0.781	INTRON CG32698
2L	8475436	2L_8475436_SNP [dm3] 2L_8475436_SNP [dm6]	T	C	2.484e^-4	0.781	INTRON d	TF binding site mE1_TFBS_cad
X	20907228	X_20907228_DEL [dm3] X_21036201_DEL [dm6]	TT	T	2.485e^-4	0.781	INTRON Ntf-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3186701	2L_3186701_SNP [dm3] 2L_3186701_SNP [dm6]	A	G	2.486e^-4	0.781	INTRON CG34393
2L	17009763	2L_17009763_SNP [dm3] 2L_17009763_SNP [dm6]	T	C	2.487e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2848983	3L_2848983_SNP [dm3] 3L_2848983_SNP [dm6]	G	A	2.497e^-4	0.781	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	2849007	3L_2849007_SNP [dm3] 3L_2849007_SNP [dm6]	T	C	2.497e^-4	0.781	INTRON CG43444	TF binding site mE1_TFBS_cad
X	20775515	X_20775515_SNP [dm3] X_20904488_SNP [dm6]	T	C	2.497e^-4	0.781	INTRON shakB
3R	16414229	3R_16414229_SNP [dm3] 3R_20588507_SNP [dm6]	A	T	2.499e^-4	0.781	UPSTREAM Srp72 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7248466	3L_7248466_SNP [dm3] 3L_7255366_SNP [dm6]	C	T	2.502e^-4	0.781	INTRON CG14830
X	15437740	X_15437740_SNP [dm3] X_15543707_SNP [dm6]	C	T	2.509e^-4	0.781	INTRON Ac13E
2L	15028867	2L_15028867_SNP [dm3] 2L_15028867_SNP [dm6]	C	A	2.511e^-4	0.781	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2R	13511207	2R_13511207_SNP [dm3] 2R_17623702_SNP [dm6]	A	T	2.516e^-4	0.781	INTRON CG10936
4	628888	4_628888_SNP [dm3] 4_608262_SNP [dm6]	G	A	2.527e^-4	0.781	UPSTREAM onecut INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16835956	2L_16835956_SNP [dm3] 2L_16835956_SNP [dm6]	A	T	2.530e^-4	0.781	NON_SYNONYMOUS_CODING CG13283	TF binding site mE1_TFBS_sens
2R	15159539	2R_15159539_SNP [dm3] 2R_19272034_SNP [dm6]	A	T	2.533e^-4	0.781	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr
3L	3395070	3L_3395070_DEL [dm3] 3L_3395070_DEL [dm6]	TTTCT	T	2.549e^-4	0.781	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6568910	2R_6568910_SNP [dm3] 2R_10681405_SNP [dm6]	A	C	2.550e^-4	0.781	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12176075	2L_12176075_SNP [dm3] 2L_12176075_SNP [dm6]	C	T	2.550e^-4	0.781	INTRON aret & 1 other
3R	2656393	3R_2656393_SNP [dm3] 3R_6830671_SNP [dm6]	G	A	2.560e^-4	0.781	INTRON Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	12678105	3L_12678105_SNP [dm3] 3L_12685005_SNP [dm6]	A	C	2.566e^-4	0.781	INTERGENIC
3L	8421379	3L_8421379_SNP [dm3] 3L_8428279_SNP [dm6]	C	A	2.575e^-4	0.781	UTR_3_PRIME Cbl INTRON Cbl
3R	24027202	3R_24027202_SNP [dm3] 3R_28201480_SNP [dm6]	C	T	2.576e^-4	0.781	INTRON CG34354
X	14116619	X_14116619_SNP [dm3] X_14222586_SNP [dm6]	A	G	2.577e^-4	0.781	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	16059103	3R_16059103_SNP [dm3] 3R_20233381_SNP [dm6]	G	T	2.583e^-4	0.781	INTRON Nlg4
3L	5907324	3L_5907324_SNP [dm3] 3L_5914224_SNP [dm6]	T	C	2.593e^-4	0.781	INTRON CG13288
3R	1807206	3R_1807206_SNP [dm3] 3R_5981484_SNP [dm6]	C	T	2.598e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6004302	3L_6004302_SNP [dm3] 3L_6011202_SNP [dm6]	C	T	2.603e^-4	0.781	UPSTREAM alphaKap4 INTRON PVRAP
2L	17006870	2L_17006870_SNP [dm3] 2L_17006870_SNP [dm6]	C	A	2.609e^-4	0.781	INTERGENIC
3L	2917736	3L_2917736_SNP [dm3] 3L_2917736_SNP [dm6]	A	T	2.611e^-4	0.781	INTRON Shab
3L	8961437	3L_8961437_SNP [dm3] 3L_8968337_SNP [dm6]	A	T	2.612e^-4	0.781	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	13019604	3R_13019604_INS [dm3] 3R_17193882_INS [dm6]	A	AACCTATTGAACCTATTGAA...	2.615e^-4	0.781	INTRON Mur89F
3L	3395069	3L_3395069_SNP [dm3] 3L_3395069_SNP [dm6]	A	G	2.621e^-4	0.781	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15468937	2L_15468937_SNP [dm3] 2L_15468937_SNP [dm6]	T	C	2.625e^-4	0.781	DOWNSTREAM CR45353 INTERGENIC
X	7147156	X_7147156_SNP [dm3] X_7253123_SNP [dm6]	A	T	2.626e^-4	0.781	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	8798696	3L_8798696_SNP [dm3] 3L_8805596_SNP [dm6]	G	T	2.627e^-4	0.781	DOWNSTREAM CG13312 INTRON CG34427	TF binding site mE1_TFBS_chinmo
3R	1082823	3R_1082823_SNP [dm3] 3R_5257101_SNP [dm6]	T	G	2.628e^-4	0.781	START_GAINED Hph UTR_5_PRIME Hph UPSTREAM CG12173	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	13214476	X_13214476_DEL [dm3] X_13320443_DEL [dm6]	TATATTTTTCTAAAC...	T	2.632e^-4	0.781	UPSTREAM IP3K2 INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
4	686850	4_686850_SNP [dm3] 4_666224_SNP [dm6]	G	A	2.634e^-4	0.781	NON_SYNONYMOUS_CODING Slip1
3R	24087601	3R_24087601_SNP [dm3] 3R_28261879_SNP [dm6]	A	G	2.636e^-4	0.781	DOWNSTREAM CG43125 INTERGENIC
2L	9632756	2L_9632756_SNP [dm3] 2L_9632756_SNP [dm6]	T	G	2.638e^-4	0.781	INTERGENIC
3L	8946487	3L_8946487_DEL [dm3] 3L_8953387_DEL [dm6]	AT	A	2.643e^-4	0.781	UPSTREAM orb2 & 1 other INTRON orb2 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	1216528	3R_1216528_SNP [dm3] 3R_5390806_SNP [dm6]	C	T	2.647e^-4	0.781	INTRON kkv	regulatory region REDfly_CRMs
X	1682468	X_1682468_SNP [dm3] X_1788435_SNP [dm6]	T	C	2.650e^-4	0.781	DOWNSTREAM mir-981 & 1 other INTRON CG42666
3L	4314120	3L_4314120_SNP [dm3] 3L_4314120_SNP [dm6]	A	T	2.651e^-4	0.781	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
2L	8057386	2L_8057386_SNP [dm3] 2L_8057386_SNP [dm6]	C	T	2.667e^-4	0.781	SYNONYMOUS_CODING poe
3L	11573824	3L_11573824_SNP [dm3] 3L_11580724_SNP [dm6]	G	A	2.668e^-4	0.781	UPSTREAM CG43390 DOWNSTREAM CG43391 & 1 other INTERGENIC
2R	12543589	2R_12543589_SNP [dm3] 2R_16656084_SNP [dm6]	A	G	2.670e^-4	0.781	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
2R	13514431	2R_13514431_SNP [dm3] 2R_17626926_SNP [dm6]	A	G	2.672e^-4	0.781	INTRON CG10936
3R	26473223	3R_26473223_SNP [dm3] 3R_30647501_SNP [dm6]	C	A	2.676e^-4	0.781	SYNONYMOUS_CODING PH4alphaPV	TF binding site mE1_TFBS_sens
X	16364135	X_16364135_SNP [dm3] X_16470102_SNP [dm6]	G	A	2.683e^-4	0.781	INTRON para
3L	11523976	3L_11523976_SNP [dm3] 3L_11530876_SNP [dm6]	G	T	2.685e^-4	0.781	INTRON Mob2
3L	6012982	3L_6012982_DEL [dm3] 3L_6019882_DEL [dm6]	TGTATGT	T	2.693e^-4	0.781	INTRON PVRAP
2R	8438854	2R_8438854_SNP [dm3] 2R_12551349_SNP [dm6]	T	A	2.704e^-4	0.781	INTRON fra
2R	13508719	2R_13508719_SNP [dm3] 2R_17621214_SNP [dm6]	A	G	2.706e^-4	0.781	INTRON CG10936
3L	3261013	3L_3261013_DEL [dm3] 3L_3261013_DEL [dm6]	ATT	G	2.706e^-4	0.781	INTRON ckd
3L	668101	3L_668101_SNP [dm3] 3L_668101_SNP [dm6]	G	A	2.711e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10732923	3L_10732923_SNP [dm3] 3L_10739823_SNP [dm6]	G	T	2.729e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	5851361	X_5851361_SNP [dm3] X_5957328_SNP [dm6]	C	T	2.731e^-4	0.781	DOWNSTREAM fs_1_M3 INTRON CG6067	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4314132	3L_4314132_SNP [dm3] 3L_4314132_SNP [dm6]	C	G	2.732e^-4	0.781	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	3008213	3L_3008213_SNP [dm3] 3L_3008213_SNP [dm6]	G	T	2.733e^-4	0.781	INTRON FMRFaR
3L	18651480	3L_18651480_SNP [dm3] 3L_18658380_SNP [dm6]	C	A	2.737e^-4	0.781	INTRON MYPT-75D
3R	6989159	3R_6989159_SNP [dm3] 3R_11163437_SNP [dm6]	A	T	2.750e^-4	0.781	UTR_3_PRIME CG4757 DOWNSTREAM CG4757 & 1 other
3R	2806059	3R_2806059_SNP [dm3] 3R_6980337_SNP [dm6]	A	T	2.768e^-4	0.781	INTRON Antp
3L	2380308	3L_2380308_SNP [dm3] 3L_2380308_SNP [dm6]	A	G	2.780e^-4	0.781	INTRON CG45186
X	9523295	X_9523295_SNP [dm3] X_9629262_SNP [dm6]	C	G	2.783e^-4	0.781	SYNONYMOUS_CODING l_1_G0232
3L	14769451	3L_14769451_INS [dm3] 3L_14776351_INS [dm6]	A	ACAATA	2.791e^-4	0.781	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17966106	2R_17966106_SNP [dm3] 2R_22078601_SNP [dm6]	T	A	2.795e^-4	0.781	UTR_3_PRIME GlcT-1
X	3398607	X_3398607_SNP [dm3] X_3504574_SNP [dm6]	T	A	2.799e^-4	0.781	UTR_5_PRIME Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19386849	3L_19386849_SNP [dm3] 3L_19393749_SNP [dm6]	T	C	2.816e^-4	0.781	INTRON CG32206
3R	23370561	3R_23370561_SNP [dm3] 3R_27544839_SNP [dm6]	A	G	2.818e^-4	0.781	NON_SYNONYMOUS_CODING Gr98c DOWNSTREAM Gr98b
2R	18835034	2R_18835034_SNP [dm3] 2R_22947511_SNP [dm6]	G	A	2.819e^-4	0.781	INTERGENIC
X	7909352	X_7909352_SNP [dm3] X_8015319_SNP [dm6]	G	A	2.820e^-4	0.781	INTRON Tbh
3R	6545209	3R_6545209_SNP [dm3] 3R_10719487_SNP [dm6]	C	T	2.824e^-4	0.781	INTERGENIC
3L	21633681	3L_21633681_SNP [dm3] 3L_21640581_SNP [dm6]	A	T	2.825e^-4	0.781	UTR_3_PRIME CG32445 UPSTREAM Atox1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	562914	3L_562914_SNP [dm3] 3L_562914_SNP [dm6]	T	C	2.826e^-4	0.781	INTRON hipk
3R	6975901	3R_6975901_SNP [dm3] 3R_11150179_SNP [dm6]	T	A	2.848e^-4	0.781	DOWNSTREAM Ugt86Di INTERGENIC
3L	11522959	3L_11522959_DEL [dm3] 3L_11529859_DEL [dm6]	TTG	AA	2.848e^-4	0.781	INTRON Mob2
3R	14262298	3R_14262298_SNP [dm3] 3R_18436576_SNP [dm6]	A	G	2.852e^-4	0.781	INTRON fru	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10407868	X_10407868_SNP [dm3] X_10513835_SNP [dm6]	G	T	2.853e^-4	0.781	INTRON spri
2L	15338011	2L_15338011_SNP [dm3] 2L_15338011_SNP [dm6]	A	C	2.858e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19128730	2L_19128730_SNP [dm3] 2L_19128730_SNP [dm6]	T	A	2.861e^-4	0.781	SYNONYMOUS_CODING l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad
3L	3634296	3L_3634296_SNP [dm3] 3L_3634296_SNP [dm6]	A	T	2.868e^-4	0.781	INTRON dar1	TF binding site mE1_TFBS_HSA
3R	15137458	3R_15137458_SNP [dm3] 3R_19311736_SNP [dm6]	C	A	2.872e^-4	0.781	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4869652	2L_4869652_SNP [dm3] 2L_4869652_SNP [dm6]	G	A	2.876e^-4	0.781	INTRON pog
2R	6916580	2R_6916580_SNP [dm3] 2R_11029075_SNP [dm6]	A	T	2.877e^-4	0.781	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	5332253	2R_5332253_SNP [dm3] 2R_9444748_SNP [dm6]	G	C	2.881e^-4	0.781	UTR_5_PRIME ced-6 DOWNSTREAM CR45321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18609594	3R_18609594_SNP [dm3] 3R_22783872_SNP [dm6]	C	T	2.884e^-4	0.781	INTRON CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13508148	2R_13508148_SNP [dm3] 2R_17620643_SNP [dm6]	A	T	2.887e^-4	0.781	INTRON CG10936
2L	12136213	2L_12136213_SNP [dm3] 2L_12136213_SNP [dm6]	C	T	2.918e^-4	0.781	INTERGENIC
X	4593676	X_4593676_SNP [dm3] X_4699643_SNP [dm6]	A	G	2.928e^-4	0.781	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl
X	14116623	X_14116623_DEL [dm3] X_14222590_DEL [dm6]	AC	A	2.937e^-4	0.781	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	15137469	3R_15137469_SNP [dm3] 3R_19311747_SNP [dm6]	T	C	2.944e^-4	0.781	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7076162	2L_7076162_SNP [dm3] 2L_7076162_SNP [dm6]	T	A	2.947e^-4	0.781	INTRON Pvf2	TF binding site mE1_TFBS_cad
X	1665051	X_1665051_DEL [dm3] X_1771018_DEL [dm6]	CGCTTCC	C	2.950e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10285263	3L_10285263_SNP [dm3] 3L_10292163_SNP [dm6]	T	G	2.953e^-4	0.781	INTERGENIC
3L	9031187	3L_9031187_SNP [dm3] 3L_9038087_SNP [dm6]	A	G	2.954e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	5651376	2L_5651376_SNP [dm3] 2L_5651376_SNP [dm6]	A	C	2.960e^-4	0.781	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3709233	2L_3709233_SNP [dm3] 2L_3709233_SNP [dm6]	T	G	2.961e^-4	0.781	INTRON cutlet	TF binding site mE1_TFBS_cad
X	1679793	X_1679793_SNP [dm3] X_1785760_SNP [dm6]	A	C	2.961e^-4	0.781	UTR_3_PRIME Adar INTRON CG42666
3R	8345262	3R_8345262_SNP [dm3] 3R_12519540_SNP [dm6]	T	C	2.973e^-4	0.781	INTRON Octbeta3R
3L	22400184	3L_22400184_SNP [dm3] 3L_22407084_SNP [dm6]	C	T	2.983e^-4	0.781	NON_SYNONYMOUS_CODING Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1778282	3R_1778282_SNP [dm3] 3R_5952560_SNP [dm6]	C	A	2.986e^-4	0.781	INTRON CG34113
2L	13590692	2L_13590692_SNP [dm3] 2L_13590692_SNP [dm6]	A	C	2.988e^-4	0.781	INTRON kuz	TF binding site BDTNP1_TFBS_da
3L	4620888	3L_4620888_SNP [dm3] 3L_4620888_SNP [dm6]	G	A	2.992e^-4	0.781	UPSTREAM CG32246 INTRON Src64B	TF binding site mE1_TFBS_HSA
2L	6981717	2L_6981717_SNP [dm3] 2L_6981717_SNP [dm6]	G	A	3.005e^-4	0.781	INTRON uif	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19285054	3R_19285054_SNP [dm3] 3R_23459332_SNP [dm6]	T	A	3.014e^-4	0.781	INTRON CG4374
3L	2005211	3L_2005211_SNP [dm3] 3L_2005211_SNP [dm6]	A	T	3.018e^-4	0.781	UTR_3_PRIME CG42841
3L	22375559	3L_22375559_SNP [dm3] 3L_22382459_SNP [dm6]	G	T	3.020e^-4	0.781	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17228519	2L_17228519_SNP [dm3] 2L_17228519_SNP [dm6]	T	C	3.028e^-4	0.781	INTRON beat-IIIc
2L	4421191	2L_4421191_INS [dm3] 2L_4421191_INS [dm6]	C	CCAC	3.030e^-4	0.781	INTRON CG15431	TF binding site mE1_TFBS_sbb
2L	20607667	2L_20607667_SNP [dm3] 2L_20607667_SNP [dm6]	G	C	3.039e^-4	0.781	INTRON CR44909 EXON CR43608
X	564573	X_564573_SNP [dm3] X_670540_SNP [dm6]	T	A	3.040e^-4	0.781	INTERGENIC
3L	11523033	3L_11523033_SNP [dm3] 3L_11529933_SNP [dm6]	G	A	3.041e^-4	0.781	INTRON Mob2
3L	11044203	3L_11044203_SNP [dm3] 3L_11051103_SNP [dm6]	T	A	3.049e^-4	0.781	UPSTREAM CG43693 DOWNSTREAM CR45119 INTRON CG43693
X	14116571	X_14116571_INS [dm3] X_14222538_INS [dm6]	T	TA	3.060e^-4	0.781	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
X	14115886	X_14115886_SNP [dm3] X_14221853_SNP [dm6]	A	G	3.063e^-4	0.781	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14115898	X_14115898_SNP [dm3] X_14221865_SNP [dm6]	T	G	3.063e^-4	0.781	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19312691	3L_19312691_SNP [dm3] 3L_19319591_SNP [dm6]	T	C	3.064e^-4	0.781	INTRON pip
X	7613255	X_7613255_SNP [dm3] X_7719222_SNP [dm6]	T	C	3.067e^-4	0.781	INTERGENIC
X	16926503	X_16926503_SNP [dm3] X_17032470_SNP [dm6]	G	T	3.071e^-4	0.781	SYNONYMOUS_CODING CG45002 INTRON CG45002
3R	25833944	3R_25833944_SNP [dm3] 3R_30008222_SNP [dm6]	G	A	3.073e^-4	0.781	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19386798	3L_19386798_SNP [dm3] 3L_19393698_SNP [dm6]	G	C	3.075e^-4	0.781	INTRON CG32206
X	16366015	X_16366015_SNP [dm3] X_16471982_SNP [dm6]	G	A	3.084e^-4	0.781	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8515522	3R_8515522_SNP [dm3] 3R_12689800_SNP [dm6]	G	T	3.090e^-4	0.781	UPSTREAM kar DOWNSTREAM Su_fu_ INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16058092	3R_16058092_SNP [dm3] 3R_20232370_SNP [dm6]	G	A	3.091e^-4	0.781	INTRON Nlg4
3L	8961512	3L_8961512_SNP [dm3] 3L_8968412_SNP [dm6]	A	T	3.095e^-4	0.781	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3L	5905545	3L_5905545_SNP [dm3] 3L_5912445_SNP [dm6]	A	T	3.100e^-4	0.781	INTRON CG13288
3L	2003168	3L_2003168_SNP [dm3] 3L_2003168_SNP [dm6]	C	A	3.111e^-4	0.781	UTR_3_PRIME CG42841
2R	16803196	2R_16803196_SNP [dm3] 2R_20915691_SNP [dm6]	C	G	3.114e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6482782	2R_6482782_SNP [dm3] 2R_10595277_SNP [dm6]	A	T	3.117e^-4	0.781	INTRON psq	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	10406386	2L_10406386_SNP [dm3] 2L_10406386_SNP [dm6]	T	C	3.118e^-4	0.781	SYNONYMOUS_CODING Ir31a	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	3398460	2L_3398460_SNP [dm3] 2L_3398460_SNP [dm6]	C	G	3.124e^-4	0.781	UTR_3_PRIME CG34175 UPSTREAM CR44792
3L	19411145	3L_19411145_SNP [dm3] 3L_19418045_SNP [dm6]	G	T	3.124e^-4	0.781	INTERGENIC
2R	10456211	2R_10456211_SNP [dm3] 2R_14568706_SNP [dm6]	T	G	3.126e^-4	0.781	INTRON ttv
3R	4581643	3R_4581643_SNP [dm3] 3R_8755921_SNP [dm6]	G	A	3.127e^-4	0.781	UTR_5_PRIME CG34135 & 1 other DOWNSTREAM CR44228	TF binding site mE1_TFBS_cad
X	2387331	X_2387331_DEL [dm3] X_2493298_DEL [dm6]	AT	A	3.131e^-4	0.781	INTRON trol
X	14115895	X_14115895_SNP [dm3] X_14221862_SNP [dm6]	T	G	3.132e^-4	0.781	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11227388	X_11227388_SNP [dm3] X_11333355_SNP [dm6]	G	A	3.142e^-4	0.781	DOWNSTREAM Kap3 INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4022801	2L_4022801_SNP [dm3] 2L_4022801_SNP [dm6]	A	G	3.143e^-4	0.781	INTERGENIC
2L	8380342	2L_8380342_SNP [dm3] 2L_8380342_SNP [dm6]	C	T	3.147e^-4	0.781	INTRON Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26852475	3R_26852475_SNP [dm3] 3R_31026753_SNP [dm6]	T	C	3.148e^-4	0.781	INTERGENIC
2L	10307722	2L_10307722_SNP [dm3] 2L_10307722_SNP [dm6]	C	T	3.157e^-4	0.781	SYNONYMOUS_CODING CG4968 DOWNSTREAM Cdk5alpha	TF binding site mE1_TFBS_sens
3L	2917732	3L_2917732_SNP [dm3] 3L_2917732_SNP [dm6]	T	C	3.161e^-4	0.781	INTRON Shab
X	19203271	X_19203271_SNP [dm3] X_19309238_SNP [dm6]	T	G	3.169e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18035714	2R_18035714_SNP [dm3] 2R_22148209_SNP [dm6]	A	T	3.172e^-4	0.781	INTRON a
3L	12090031	3L_12090031_SNP [dm3] 3L_12096931_SNP [dm6]	A	T	3.174e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3855963	3L_3855963_SNP [dm3] 3L_3855963_SNP [dm6]	C	A	3.175e^-4	0.781	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	19323243	2R_19323243_SNP [dm3] 2R_23435720_SNP [dm6]	A	T	3.184e^-4	0.781	INTERGENIC
3L	14657383	3L_14657383_SNP [dm3] 3L_14664283_SNP [dm6]	C	A	3.184e^-4	0.781	INTRON dlp
3L	4314133	3L_4314133_INS [dm3] 3L_4314133_INS [dm6]	C	CTGATCG	3.192e^-4	0.781		TF binding site mE1_TFBS_sens
3L	4314139	3L_4314139_SNP [dm3] 3L_4314139_SNP [dm6]	A	G	3.192e^-4	0.781	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
X	1670652	X_1670652_SNP [dm3] X_1776619_SNP [dm6]	C	A	3.193e^-4	0.781	INTRON Adar & 1 other
X	5752543	X_5752543_SNP [dm3] X_5858510_SNP [dm6]	A	C	3.220e^-4	0.781	INTERGENIC
2R	12549096	2R_12549096_SNP [dm3] 2R_16661591_SNP [dm6]	C	T	3.221e^-4	0.781	INTRON Picot
3L	15286797	3L_15286797_SNP [dm3] 3L_15293697_SNP [dm6]	A	G	3.222e^-4	0.781	INTERGENIC
3L	11603735	3L_11603735_SNP [dm3] 3L_11610635_SNP [dm6]	C	T	3.223e^-4	0.781	UTR_3_PRIME Muc68Ca DOWNSTREAM CG42832
3L	18607466	3L_18607466_SNP [dm3] 3L_18614366_SNP [dm6]	C	T	3.224e^-4	0.781	DOWNSTREAM CG32199 INTRON CG4174 & 1 other
3L	6479178	3L_6479178_DEL [dm3] 3L_6486078_DEL [dm6]	AA	A	3.226e^-4	0.781	DOWNSTREAM CG10147 & 1 other INTERGENIC
3R	26368979	3R_26368979_SNP [dm3] 3R_30543257_SNP [dm6]	A	C	3.228e^-4	0.781	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19870173	X_19870173_SNP [dm3] X_19976140_SNP [dm6]	A	G	3.233e^-4	0.781	INTERGENIC
2R	7135263	2R_7135263_SNP [dm3] 2R_11247758_SNP [dm6]	G	T	3.235e^-4	0.781	UPSTREAM CG34227 INTERGENIC
2L	17067822	2L_17067822_SNP [dm3] 2L_17067822_SNP [dm6]	C	A	3.238e^-4	0.781	INTERGENIC
3R	11832876	3R_11832876_SNP [dm3] 3R_16007154_SNP [dm6]	A	C	3.240e^-4	0.781	EXON CR42839	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3413975	3R_3413975_SNP [dm3] 3R_7588253_SNP [dm6]	A	G	3.241e^-4	0.781	INTRON CG34127
2L	2892836	2L_2892836_SNP [dm3] 2L_2892836_SNP [dm6]	G	A	3.241e^-4	0.781	INTRON lilli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	664349	4_664349_SNP [dm3] 4_643723_SNP [dm6]	G	T	3.243e^-4	0.781	INTRON CG9935	transposable element FlyBase
3L	2380100	3L_2380100_SNP [dm3] 3L_2380100_SNP [dm6]	T	A	3.245e^-4	0.781	INTRON CG45186
3L	10732921	3L_10732921_SNP [dm3] 3L_10739821_SNP [dm6]	C	A	3.253e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	11604176	3L_11604176_SNP [dm3] 3L_11611076_SNP [dm6]	A	G	3.254e^-4	0.781	SYNONYMOUS_CODING Muc68Ca DOWNSTREAM CG42832	TF binding site mE1_TFBS_sens
2L	9510445	2L_9510445_SNP [dm3] 2L_9510445_SNP [dm6]	A	G	3.257e^-4	0.781	INTRON CG33298
3L	21758159	3L_21758159_SNP [dm3] 3L_21765059_SNP [dm6]	G	T	3.260e^-4	0.781	INTRON Syn1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
3R	26034972	3R_26034972_SNP [dm3] 3R_30209250_SNP [dm6]	G	A	3.260e^-4	0.781	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20601780	2L_20601780_SNP [dm3] 2L_20601780_SNP [dm6]	G	A	3.261e^-4	0.781	INTRON CR44909	TF binding site mE1_TFBS_HSA
3L	5875067	3L_5875067_SNP [dm3] 3L_5881967_SNP [dm6]	C	G	3.263e^-4	0.781	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	11176527	3L_11176527_DEL [dm3] 3L_11183427_DEL [dm6]	AA	A	3.280e^-4	0.781	INTRON GlcAT-P
3L	8801314	3L_8801314_SNP [dm3] 3L_8808214_SNP [dm6]	A	G	3.281e^-4	0.781	NON_SYNONYMOUS_CODING CG32024 UPSTREAM CG13308
X	4594136	X_4594136_SNP [dm3] X_4700103_SNP [dm6]	T	G	3.282e^-4	0.781	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl
3L	9032563	3L_9032563_SNP [dm3] 3L_9039463_SNP [dm6]	A	C	3.290e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10229204	X_10229204_SNP [dm3] X_10335171_SNP [dm6]	G	A	3.291e^-4	0.781	INTRON CG43740
2L	9489738	2L_9489738_INS [dm3] 2L_9489738_INS [dm6]	C	AT	3.294e^-4	0.781	INTERGENIC
2L	20823941	2L_20823941_SNP [dm3] 2L_20823941_SNP [dm6]	C	T	3.297e^-4	0.781	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8380339	2L_8380339_DEL [dm3] 2L_8380339_DEL [dm6]	TG	T	3.299e^-4	0.781	INTRON Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19516811	X_19516811_SNP [dm3] X_19622778_SNP [dm6]	C	T	3.303e^-4	0.781	SYNONYMOUS_CODING NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11322300	X_11322300_SNP [dm3] X_11428267_SNP [dm6]	A	C	3.304e^-4	0.781	INTRON Gs2
2L	5651443	2L_5651443_SNP [dm3] 2L_5651443_SNP [dm6]	A	C	3.310e^-4	0.781	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11322351	2L_11322351_SNP [dm3] 2L_11322351_SNP [dm6]	A	G	3.314e^-4	0.781	INTERGENIC
X	7288440	X_7288440_INS [dm3] X_7394407_INS [dm6]	G	GTAG	3.315e^-4	0.781	INTRON CG1677 & 1 other
3L	19386848	3L_19386848_SNP [dm3] 3L_19393748_SNP [dm6]	G	T	3.317e^-4	0.781	INTRON CG32206
3L	11176532	3L_11176532_DEL [dm3] 3L_11183432_DEL [dm6]	GA	T	3.318e^-4	0.781	INTRON GlcAT-P
3L	12197962	3L_12197962_SNP [dm3] 3L_12204862_SNP [dm6]	C	T	3.326e^-4	0.781	NON_SYNONYMOUS_CODING CG5626 UPSTREAM Adk1
3L	3694569	3L_3694569_SNP [dm3] 3L_3694569_SNP [dm6]	A	C	3.332e^-4	0.781	UPSTREAM CR43485 INTERGENIC
2L	7611774	2L_7611774_SNP [dm3] 2L_7611774_SNP [dm6]	A	T	3.345e^-4	0.781	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
3L	3171693	3L_3171693_DEL [dm3] 3L_3171693_DEL [dm6]	AAGT	A	3.351e^-4	0.781	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
3L	6635631	3L_6635631_SNP [dm3] 3L_6642531_SNP [dm6]	T	A	3.352e^-4	0.781	EXON CR45239
3R	2870860	3R_2870860_DEL [dm3] 3R_7045138_DEL [dm6]	CAAGCAAC	C	3.362e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14615412	3L_14615412_SNP [dm3] 3L_14622312_SNP [dm6]	G	A	3.368e^-4	0.781	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
X	1668122	X_1668122_SNP [dm3] X_1774089_SNP [dm6]	A	T	3.371e^-4	0.781	UTR_5_PRIME CG42666 & 1 other UPSTREAM Adar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9403496	2R_9403496_SNP [dm3] 2R_13515991_SNP [dm6]	G	T	3.372e^-4	0.781	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18769671	3R_18769671_SNP [dm3] 3R_22943949_SNP [dm6]	T	C	3.373e^-4	0.781	INTRON klg
2R	17986256	2R_17986256_SNP [dm3] 2R_22098751_SNP [dm6]	C	T	3.377e^-4	0.781	INTRON CG11073	TF binding site BDTNP1_TFBS_dl
3L	14660404	3L_14660404_SNP [dm3] 3L_14667304_SNP [dm6]	C	T	3.379e^-4	0.781	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10675117	2R_10675117_SNP [dm3] 2R_14787612_SNP [dm6]	A	T	3.382e^-4	0.781	INTRON kn
2R	16504470	2R_16504470_SNP [dm3] 2R_20616965_SNP [dm6]	T	G	3.382e^-4	0.781	INTRON Hil
3R	479697	3R_479697_SNP [dm3] 3R_4653975_SNP [dm6]	A	G	3.397e^-4	0.781	SYNONYMOUS_CODING Karybeta3 UPSTREAM spartin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8964454	3L_8964454_SNP [dm3] 3L_8971354_SNP [dm6]	G	T	3.399e^-4	0.781	UTR_3_PRIME CG5026 DOWNSTREAM pix
3R	24027254	3R_24027254_SNP [dm3] 3R_28201532_SNP [dm6]	A	G	3.400e^-4	0.781	INTRON CG34354
3R	13019603	3R_13019603_SNP [dm3] 3R_17193881_SNP [dm6]	A	G	3.401e^-4	0.781	INTRON Mur89F
3L	7188181	3L_7188181_SNP [dm3] 3L_7195081_SNP [dm6]	G	A	3.408e^-4	0.781	INTERGENIC
3L	954701	3L_954701_SNP [dm3] 3L_954701_SNP [dm6]	C	A	3.418e^-4	0.781	INTRON Glut1
2R	8835250	2R_8835250_SNP [dm3] 2R_12947745_SNP [dm6]	G	T	3.420e^-4	0.781	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14135259	2L_14135259_SNP [dm3] 2L_14135259_SNP [dm6]	A	G	3.425e^-4	0.781	INTRON CG17341
2L	8078746	2L_8078746_SNP [dm3] 2L_8078746_SNP [dm6]	C	T	3.425e^-4	0.781	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
3R	25882406	3R_25882406_SNP [dm3] 3R_30056684_SNP [dm6]	T	A	3.426e^-4	0.781	UPSTREAM CG7950 & 2 others DOWNSTREAM CG15526 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	5892845	3R_5892845_SNP [dm3] 3R_10067123_SNP [dm6]	T	C	3.430e^-4	0.781	UPSTREAM CG33784 INTRON CG33783
3L	7248828	3L_7248828_SNP [dm3] 3L_7255728_SNP [dm6]	A	G	3.430e^-4	0.781	INTRON CG14830
X	4966354	X_4966354_SNP [dm3] X_5072321_SNP [dm6]	G	A	3.430e^-4	0.781	UTR_3_PRIME CG32767
3L	11153717	3L_11153717_SNP [dm3] 3L_11160617_SNP [dm6]	G	C	3.432e^-4	0.781	NON_SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo
3L	2004867	3L_2004867_SNP [dm3] 3L_2004867_SNP [dm6]	G	A	3.432e^-4	0.781	DOWNSTREAM CG42841 INTRON CG42841
X	9917512	X_9917512_SNP [dm3] X_10023479_SNP [dm6]	T	A	3.436e^-4	0.781	INTRON Cht6	TF binding site BDTNP1_TFBS_twi
3R	20706409	3R_20706409_SNP [dm3] 3R_24880687_SNP [dm6]	C	T	3.438e^-4	0.781	SYNONYMOUS_CODING CG11089 DOWNSTREAM CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9038062	2R_9038062_SNP [dm3] 2R_13150557_SNP [dm6]	A	G	3.448e^-4	0.781	SYNONYMOUS_CODING Ack-like
3L	14670069	3L_14670069_SNP [dm3] 3L_14676969_SNP [dm6]	G	A	3.452e^-4	0.781	INTRON ome & 1 other
3L	2000949	3L_2000949_SNP [dm3] 3L_2000949_SNP [dm6]	C	T	3.460e^-4	0.781	INTERGENIC
3L	9602057	3L_9602057_SNP [dm3] 3L_9608957_SNP [dm6]	G	A	3.462e^-4	0.781	SYNONYMOUS_CODING CG3280
3L	3177874	3L_3177874_SNP [dm3] 3L_3177874_SNP [dm6]	A	C	3.464e^-4	0.781	INTRON CG14964
3R	4862001	3R_4862001_SNP [dm3] 3R_9036279_SNP [dm6]	T	A	3.466e^-4	0.781	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8343568	3R_8343568_SNP [dm3] 3R_12517846_SNP [dm6]	T	G	3.468e^-4	0.781	SYNONYMOUS_CODING Octbeta3R INTRON Octbeta3R	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_inv
X	19870228	X_19870228_SNP [dm3] X_19976195_SNP [dm6]	T	A	3.473e^-4	0.781	INTERGENIC
2L	14605595	2L_14605595_SNP [dm3] 2L_14605595_SNP [dm6]	G	T	3.475e^-4	0.781	INTRON osp
2L	14019111	2L_14019111_SNP [dm3] 2L_14019111_SNP [dm6]	A	T	3.476e^-4	0.781	UTR_3_PRIME bgm UPSTREAM CR44849 DOWNSTREAM NimC3	TF binding site mE1_TFBS_cad
3L	14579000	3L_14579000_SNP [dm3] 3L_14585900_SNP [dm6]	T	A	3.478e^-4	0.781	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10135242	3L_10135242_SNP [dm3] 3L_10142142_SNP [dm6]	T	A	3.479e^-4	0.781	INTERGENIC
3L	6018025	3L_6018025_SNP [dm3] 3L_6024925_SNP [dm6]	G	T	3.483e^-4	0.781	INTRON PVRAP	TF binding site mE1_TFBS_chinmo
3L	10386763	3L_10386763_SNP [dm3] 3L_10393663_SNP [dm6]	A	T	3.483e^-4	0.781	INTERGENIC
3L	10732925	3L_10732925_SNP [dm3] 3L_10739825_SNP [dm6]	T	A	3.483e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	2227663	3L_2227663_INS [dm3] 3L_2227663_INS [dm6]	A	AA	3.489e^-4	0.781	INTERGENIC
3L	4313805	3L_4313805_SNP [dm3] 3L_4313805_SNP [dm6]	C	A	3.491e^-4	0.781	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8835247	2R_8835247_SNP [dm3] 2R_12947742_SNP [dm6]	A	G	3.496e^-4	0.781	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10347564	3R_10347564_SNP [dm3] 3R_14521842_SNP [dm6]	G	T	3.497e^-4	0.781	SPLICE_SITE_REGION Cyp313a1 INTRON Pde6 & 1 other
X	5851360	X_5851360_SNP [dm3] X_5957327_SNP [dm6]	T	C	3.501e^-4	0.781	DOWNSTREAM fs_1_M3 INTRON CG6067	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8832869	3L_8832869_SNP [dm3] 3L_8839769_SNP [dm6]	A	G	3.504e^-4	0.781	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	226647	3R_226647_SNP [dm3] 3R_4400925_SNP [dm6]	G	A	3.504e^-4	0.781	SYNONYMOUS_CODING CG14647 UPSTREAM CG9853 INTRON CG9853	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	6424889	3R_6424889_SNP [dm3] 3R_10599167_SNP [dm6]	G	C	3.510e^-4	0.781	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12565743	3L_12565743_SNP [dm3] 3L_12572643_SNP [dm6]	T	A	3.510e^-4	0.781	UPSTREAM sowah INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	488993	3R_488993_SNP [dm3] 3R_4663271_SNP [dm6]	C	T	3.517e^-4	0.781	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3519951	3R_3519951_SNP [dm3] 3R_7694229_SNP [dm6]	T	A	3.526e^-4	0.781	UTR_3_PRIME Nlg1
3L	8832747	3L_8832747_SNP [dm3] 3L_8839647_SNP [dm6]	G	T	3.529e^-4	0.781	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3755771	2L_3755771_SNP [dm3] 2L_3755771_SNP [dm6]	G	A	3.541e^-4	0.781	INTERGENIC
3L	8962435	3L_8962435_SNP [dm3] 3L_8969335_SNP [dm6]	G	A	3.541e^-4	0.781	SYNONYMOUS_CODING CG5026	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11730301	X_11730301_SNP [dm3] X_11836268_SNP [dm6]	C	T	3.545e^-4	0.781	UTR_3_PRIME rudhira DOWNSTREAM rudhira
X	10428563	X_10428563_SNP [dm3] X_10534530_SNP [dm6]	G	A	3.549e^-4	0.781	INTRON spri
2R	12552144	2R_12552144_SNP [dm3] 2R_16664639_SNP [dm6]	T	C	3.551e^-4	0.781	UPSTREAM Picot INTRON Picot	TF binding site mE1_TFBS_HSA
3L	12092274	3L_12092274_SNP [dm3] 3L_12099174_SNP [dm6]	A	G	3.554e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7342440	3L_7342440_SNP [dm3] 3L_7349340_SNP [dm6]	C	T	3.565e^-4	0.781	INTRON qm
3L	8832954	3L_8832954_SNP [dm3] 3L_8839854_SNP [dm6]	A	G	3.575e^-4	0.781	INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15225857	2R_15225857_SNP [dm3] 2R_19338352_SNP [dm6]	T	C	3.577e^-4	0.781	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19324769	2R_19324769_SNP [dm3] 2R_23437246_SNP [dm6]	T	A	3.580e^-4	0.781	INTERGENIC
3L	8802859	3L_8802859_SNP [dm3] 3L_8809759_SNP [dm6]	G	A	3.580e^-4	0.781	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
3R	3142504	3R_3142504_SNP [dm3] 3R_7316782_SNP [dm6]	G	A	3.590e^-4	0.781	NON_SYNONYMOUS_CODING CG10029
3R	6541411	3R_6541411_SNP [dm3] 3R_10715689_SNP [dm6]	C	T	3.593e^-4	0.781	SYNONYMOUS_CODING CG4073
3L	3694189	3L_3694189_SNP [dm3] 3L_3694189_SNP [dm6]	T	C	3.595e^-4	0.781	EXON CR43485
2R	10816174	2R_10816174_SNP [dm3] 2R_14928669_SNP [dm6]	A	T	3.597e^-4	0.781	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	8846588	2R_8846588_SNP [dm3] 2R_12959083_SNP [dm6]	A	T	3.608e^-4	0.781	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5852559	X_5852559_SNP [dm3] X_5958526_SNP [dm6]	T	C	3.616e^-4	0.781	NON_SYNONYMOUS_CODING fs_1_M3 DOWNSTREAM CG6067
3L	634541	3L_634541_SNP [dm3] 3L_634541_SNP [dm6]	G	A	3.616e^-4	0.781	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11525951	3L_11525951_SNP [dm3] 3L_11532851_SNP [dm6]	A	G	3.619e^-4	0.781	INTRON Mob2
2R	12813095	2R_12813095_SNP [dm3] 2R_16925590_SNP [dm6]	T	A	3.619e^-4	0.781	UTR_5_PRIME Pkc53E INTRON Pkc53E	TF binding site mE1_TFBS_HSA
X	1681038	X_1681038_DEL [dm3] X_1787005_DEL [dm6]	GA	T	3.622e^-4	0.781	UTR_3_PRIME Adar INTRON CG42666
3R	2704353	3R_2704353_SNP [dm3] 3R_6878631_SNP [dm6]	T	C	3.624e^-4	0.781	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9696001	2R_9696001_SNP [dm3] 2R_13808496_SNP [dm6]	G	C	3.626e^-4	0.781	INTRON stj
2R	9696008	2R_9696008_SNP [dm3] 2R_13808503_SNP [dm6]	T	A	3.626e^-4	0.781	INTRON stj
2L	9010831	2L_9010831_SNP [dm3] 2L_9010831_SNP [dm6]	T	C	3.630e^-4	0.781	SYNONYMOUS_CODING CG9568
3L	6001812	3L_6001812_SNP [dm3] 3L_6008712_SNP [dm6]	G	A	3.631e^-4	0.781	DOWNSTREAM alphaKap4 INTRON PVRAP
2R	12533674	2R_12533674_SNP [dm3] 2R_16646169_SNP [dm6]	A	C	3.638e^-4	0.781	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4585404	X_4585404_SNP [dm3] X_4691371_SNP [dm6]	T	A	3.639e^-4	0.781	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14769431	3L_14769431_SNP [dm3] 3L_14776331_SNP [dm6]	G	T	3.644e^-4	0.781	UPSTREAM mop DOWNSTREAM bmm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18005615	2R_18005615_SNP [dm3] 2R_22118110_SNP [dm6]	T	C	3.656e^-4	0.781	INTRON Vrp1
3R	5028335	3R_5028335_SNP [dm3] 3R_9202613_SNP [dm6]	T	C	3.658e^-4	0.781	INTRON pum
2L	4023012	2L_4023012_SNP [dm3] 2L_4023012_SNP [dm6]	A	T	3.670e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	19312694	3L_19312694_DEL [dm3] 3L_19319594_DEL [dm6]	TTT	T	3.672e^-4	0.781	INTRON pip
3R	26036640	3R_26036640_SNP [dm3] 3R_30210918_SNP [dm6]	C	T	3.672e^-4	0.781	UTR_5_PRIME CecA1 UPSTREAM Cec-Psi1 DOWNSTREAM Anp	regulatory region REDfly_CRMs
2L	20619323	2L_20619323_SNP [dm3] 2L_20619323_SNP [dm6]	T	A	3.673e^-4	0.781	UPSTREAM mir-288 INTRON CR44909
X	15437728	X_15437728_SNP [dm3] X_15543695_SNP [dm6]	G	C	3.682e^-4	0.781	INTRON Ac13E
X	21227702	X_21227702_SNP [dm3] X_21356675_SNP [dm6]	A	T	3.684e^-4	0.781	INTRON sol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1996361	3L_1996361_SNP [dm3] 3L_1996361_SNP [dm6]	G	C	3.690e^-4	0.781	INTERGENIC
X	3001360	X_3001360_SNP [dm3] X_3107327_SNP [dm6]	A	G	3.690e^-4	0.781	INTRON kirre
3R	3362389	3R_3362389_SNP [dm3] 3R_7536667_SNP [dm6]	G	C	3.693e^-4	0.781	UPSTREAM alpha-Est5 DOWNSTREAM alpha-Est4 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13552217	3L_13552217_SNP [dm3] 3L_13559117_SNP [dm6]	A	G	3.694e^-4	0.781	INTRON bru-3
3L	14533693	3L_14533693_SNP [dm3] 3L_14540593_SNP [dm6]	T	C	3.695e^-4	0.781	DOWNSTREAM CG9238 & 1 other INTERGENIC
3L	14587677	3L_14587677_SNP [dm3] 3L_14594577_SNP [dm6]	G	A	3.698e^-4	0.781	INTRON HGTX
X	6199670	X_6199670_SNP [dm3] X_6305637_SNP [dm6]	C	T	3.704e^-4	0.781	INTRON CG3823
2R	12552023	2R_12552023_SNP [dm3] 2R_16664518_SNP [dm6]	A	C	3.705e^-4	0.781	UPSTREAM Picot INTRON Picot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23807005	3R_23807005_SNP [dm3] 3R_27981283_SNP [dm6]	A	G	3.712e^-4	0.781	INTRON betaTub97EF
3R	1807153	3R_1807153_SNP [dm3] 3R_5981431_SNP [dm6]	G	A	3.713e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9019908	2R_9019908_SNP [dm3] 2R_13132403_SNP [dm6]	T	A	3.714e^-4	0.781	UTR_5_PRIME CG13326 UPSTREAM Cap-G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	11385964	2L_11385964_SNP [dm3] 2L_11385964_SNP [dm6]	A	T	3.715e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs
2R	14228241	2R_14228241_SNP [dm3] 2R_18340736_SNP [dm6]	A	G	3.719e^-4	0.781	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11603778	3L_11603778_SNP [dm3] 3L_11610678_SNP [dm6]	T	C	3.723e^-4	0.781	NON_SYNONYMOUS_CODING Muc68Ca DOWNSTREAM CG42832
2R	10187689	2R_10187689_SNP [dm3] 2R_14300184_SNP [dm6]	G	T	3.724e^-4	0.781	UTR_3_PRIME tej DOWNSTREAM Ih
X	9523395	X_9523395_SNP [dm3] X_9629362_SNP [dm6]	C	G	3.731e^-4	0.781	INTRON l_1_G0232
X	9917568	X_9917568_SNP [dm3] X_10023535_SNP [dm6]	C	G	3.735e^-4	0.781	INTRON Cht6	TF binding site BDTNP1_TFBS_twi
3L	9805650	3L_9805650_SNP [dm3] 3L_9812550_SNP [dm6]	T	C	3.736e^-4	0.781	INTERGENIC
3L	22386797	3L_22386797_SNP [dm3] 3L_22393697_SNP [dm6]	T	C	3.736e^-4	0.781	INTRON Ten-m
2R	7208875	2R_7208875_SNP [dm3] 2R_11321370_SNP [dm6]	G	A	3.736e^-4	0.781	UPSTREAM Or47b INTERGENIC	regulatory region REDfly_CRMs
2R	17411555	2R_17411555_SNP [dm3] 2R_21524050_SNP [dm6]	C	A	3.737e^-4	0.781	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9695967	2R_9695967_SNP [dm3] 2R_13808462_SNP [dm6]	A	C	3.747e^-4	0.782	INTRON stj
3L	877899	3L_877899_SNP [dm3] 3L_877899_SNP [dm6]	C	T	3.760e^-4	0.782	UTR_3_PRIME CG13907 INTRON CG32479
2L	14977175	2L_14977175_SNP [dm3] 2L_14977175_SNP [dm6]	T	C	3.764e^-4	0.782	INTRON mol
X	19021127	X_19021127_SNP [dm3] X_19127094_SNP [dm6]	A	G	3.772e^-4	0.782	NON_SYNONYMOUS_CODING tgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26033399	3R_26033399_SNP [dm3] 3R_30207677_SNP [dm6]	G	T	3.773e^-4	0.782	UPSTREAM snoRNA:Psi28S-2149 & 4 others DOWNSTREAM snoRNA:Psi18S-1377a & 1 other INTRON RpS7	TF binding site mE1_TFBS_sens
2L	19314678	2L_19314678_SNP [dm3] 2L_19314678_SNP [dm6]	A	C	3.774e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6677613	X_6677613_SNP [dm3] X_6783580_SNP [dm6]	T	A	3.776e^-4	0.782	INTRON C3G
3L	6018094	3L_6018094_SNP [dm3] 3L_6024994_SNP [dm6]	C	T	3.783e^-4	0.782	INTRON PVRAP	TF binding site mE1_TFBS_chinmo
3L	2004308	3L_2004308_SNP [dm3] 3L_2004308_SNP [dm6]	G	C	3.785e^-4	0.782	DOWNSTREAM CG42841 INTRON CG42841
2R	6916587	2R_6916587_SNP [dm3] 2R_11029082_SNP [dm6]	A	G	3.786e^-4	0.782	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	11197646	3L_11197646_SNP [dm3] 3L_11204546_SNP [dm6]	T	A	3.790e^-4	0.782	INTRON Plod
2R	12782395	2R_12782395_SNP [dm3] 2R_16894890_SNP [dm6]	C	T	3.801e^-4	0.782	DOWNSTREAM mir-990 INTRON CG8910
3R	1523268	3R_1523268_SNP [dm3] 3R_5697546_SNP [dm6]	T	A	3.802e^-4	0.782	INTRON plx	TF binding site mE1_TFBS_cad
3R	6981865	3R_6981865_SNP [dm3] 3R_11156143_SNP [dm6]	A	G	3.806e^-4	0.782	NON_SYNONYMOUS_CODING Ugt86Dc UPSTREAM Ugt86Da	TF binding site mE1_TFBS_sens
2R	17986290	2R_17986290_SNP [dm3] 2R_22098785_SNP [dm6]	A	T	3.821e^-4	0.782	INTRON CG11073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14637905	X_14637905_INS [dm3] X_14743872_INS [dm6]	GC	CTA	3.821e^-4	0.782	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11178627	2R_11178627_SNP [dm3] 2R_15291122_SNP [dm6]	T	C	3.827e^-4	0.782	START_GAINED Trpm UTR_5_PRIME Trpm INTRON Trpm
3L	4313823	3L_4313823_INS [dm3] 3L_4313823_INS [dm6]	A	AAAGGTA	3.858e^-4	0.782	CODON_INSERTION Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7171072	3L_7171072_SNP [dm3] 3L_7177972_SNP [dm6]	G	A	3.863e^-4	0.782	INTRON Dscam2
3L	7171106	3L_7171106_SNP [dm3] 3L_7178006_SNP [dm6]	C	T	3.863e^-4	0.782	INTRON Dscam2
3R	14133566	3R_14133566_SNP [dm3] 3R_18307844_SNP [dm6]	G	A	3.865e^-4	0.782	INTRON PKD	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8832829	3L_8832829_SNP [dm3] 3L_8839729_SNP [dm6]	G	C	3.869e^-4	0.782	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6885051	X_6885051_SNP [dm3] X_6991018_SNP [dm6]	T	A	3.872e^-4	0.782	DOWNSTREAM Inx7 INTRON ogre	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11153250	2L_11153250_SNP [dm3] 2L_11153250_SNP [dm6]	G	A	3.876e^-4	0.782	INTRON CG6287
2L	19364748	2L_19364748_SNP [dm3] 2L_19364748_SNP [dm6]	C	G	3.881e^-4	0.782	INTRON CG13086
2R	19527911	2R_19527911_SNP [dm3] 2R_23640388_SNP [dm6]	A	T	3.882e^-4	0.782	INTRON retn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	11347417	3L_11347417_SNP [dm3] 3L_11354317_SNP [dm6]	C	T	3.883e^-4	0.782	INTERGENIC
2R	17062161	2R_17062161_SNP [dm3] 2R_21174656_SNP [dm6]	C	A	3.885e^-4	0.782	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC
3L	8965679	3L_8965679_SNP [dm3] 3L_8972579_SNP [dm6]	G	A	3.888e^-4	0.782	SYNONYMOUS_CODING pix DOWNSTREAM CG5026	TF binding site mE1_TFBS_sens
X	19021026	X_19021026_SNP [dm3] X_19126993_SNP [dm6]	G	T	3.892e^-4	0.782	SYNONYMOUS_CODING tgy	TF binding site BDTNP1_TFBS_dl
3L	24001583	3L_24001583_SNP [dm3] 3L_24008483_SNP [dm6]	A	G	3.894e^-4	0.782	INTERGENIC
3L	11181529	3L_11181529_SNP [dm3] 3L_11188429_SNP [dm6]	C	T	3.896e^-4	0.782	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	22405481	3L_22405481_SNP [dm3] 3L_22412381_SNP [dm6]	A	G	3.901e^-4	0.782	INTERGENIC
2L	5856812	2L_5856812_SNP [dm3] 2L_5856812_SNP [dm6]	G	A	3.902e^-4	0.782	DOWNSTREAM TrissinR INTERGENIC
X	6818791	X_6818791_SNP [dm3] X_6924758_SNP [dm6]	T	A	3.905e^-4	0.782	INTRON CG14431
3L	3858263	3L_3858263_SNP [dm3] 3L_3858263_SNP [dm6]	C	T	3.911e^-4	0.782	INTRON Awh	TF binding site mE1_TFBS_cad
X	11227373	X_11227373_SNP [dm3] X_11333340_SNP [dm6]	A	G	3.912e^-4	0.782	DOWNSTREAM Kap3 INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10964324	3L_10964324_SNP [dm3] 3L_10971224_SNP [dm6]	G	A	3.913e^-4	0.782	INTERGENIC
3L	8960348	3L_8960348_SNP [dm3] 3L_8967248_SNP [dm6]	T	A	3.914e^-4	0.782	UPSTREAM CG5653 INTRON CG5021	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15155910	3R_15155910_INS [dm3] 3R_19330188_INS [dm6]	T	TCCT	3.917e^-4	0.782	INTRON CR43258 EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6002035	3L_6002035_SNP [dm3] 3L_6008935_SNP [dm6]	C	T	3.918e^-4	0.782	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	6002311	3L_6002311_SNP [dm3] 3L_6009211_SNP [dm6]	T	G	3.918e^-4	0.782	DOWNSTREAM alphaKap4 INTRON PVRAP	TF binding site mE1_TFBS_sbb
X	8899313	X_8899313_SNP [dm3] X_9005280_SNP [dm6]	C	T	3.929e^-4	0.782	INTRON rdgA & 1 other
3L	8831510	3L_8831510_SNP [dm3] 3L_8838410_SNP [dm6]	A	G	3.931e^-4	0.782	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2006010	3L_2006010_SNP [dm3] 3L_2006010_SNP [dm6]	C	T	3.949e^-4	0.782	UPSTREAM CG42841 INTERGENIC
3L	10218171	3L_10218171_SNP [dm3] 3L_10225071_SNP [dm6]	T	G	3.950e^-4	0.782	UTR_5_PRIME scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9149086	2R_9149086_SNP [dm3] 2R_13261581_SNP [dm6]	T	G	3.958e^-4	0.782	UPSTREAM CG42319 INTRON CG42319
3L	8962053	3L_8962053_SNP [dm3] 3L_8968953_SNP [dm6]	C	T	3.958e^-4	0.782	SYNONYMOUS_CODING CG5026 DOWNSTREAM CG5021	TF binding site mE1_TFBS_chinmo
2R	16741819	2R_16741819_SNP [dm3] 2R_20854314_SNP [dm6]	T	G	3.959e^-4	0.782	INTERGENIC
X	10408187	X_10408187_SNP [dm3] X_10514154_SNP [dm6]	G	A	3.963e^-4	0.782	INTRON spri
X	8899746	X_8899746_SNP [dm3] X_9005713_SNP [dm6]	T	A	3.966e^-4	0.782	INTRON rdgA & 1 other
3L	4620932	3L_4620932_SNP [dm3] 3L_4620932_SNP [dm6]	A	G	3.976e^-4	0.782	UPSTREAM CG32246 INTRON Src64B
3L	7137837	3L_7137837_SNP [dm3] 3L_7144737_SNP [dm6]	G	A	3.977e^-4	0.782	SPLICE_SITE_REGION corn SYNONYMOUS_CODING corn
3R	5003363	3R_5003363_SNP [dm3] 3R_9177641_SNP [dm6]	T	C	4.007e^-4	0.782	NON_SYNONYMOUS_CODING CG11997 INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11644032	3L_11644032_SNP [dm3] 3L_11650932_SNP [dm6]	G	A	4.012e^-4	0.782	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
2L	13390568	2L_13390568_SNP [dm3] 2L_13390568_SNP [dm6]	C	T	4.014e^-4	0.782	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	6982271	3R_6982271_SNP [dm3] 3R_11156549_SNP [dm6]	C	G	4.020e^-4	0.782	UPSTREAM Ugt86Da DOWNSTREAM Ugt86Dc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14955372	2L_14955372_SNP [dm3] 2L_14955372_SNP [dm6]	C	A	4.022e^-4	0.782	INTRON CG42313
3L	18222925	3L_18222925_SNP [dm3] 3L_18229825_SNP [dm6]	A	C	4.022e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1040832	3L_1040832_SNP [dm3] 3L_1040832_SNP [dm6]	C	G	4.033e^-4	0.782	INTRON bab1
3L	8955336	3L_8955336_SNP [dm3] 3L_8962236_SNP [dm6]	G	A	4.038e^-4	0.782	SYNONYMOUS_CODING CG5660
X	5851347	X_5851347_SNP [dm3] X_5957314_SNP [dm6]	T	C	4.057e^-4	0.782	DOWNSTREAM fs_1_M3 INTRON CG6067	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13932160	X_13932160_SNP [dm3] X_14038127_SNP [dm6]	A	G	4.061e^-4	0.782	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15531017	2R_15531017_SNP [dm3] 2R_19643512_SNP [dm6]	C	A	4.061e^-4	0.782	NON_SYNONYMOUS_CODING CG15124
X	20682882	X_20682882_SNP [dm3] X_20811855_SNP [dm6]	T	A	4.076e^-4	0.782	INTRON shakB
2L	8475398	2L_8475398_SNP [dm3] 2L_8475398_SNP [dm6]	T	C	4.084e^-4	0.782	INTRON d	TF binding site mE1_TFBS_cad
2R	16017574	2R_16017574_SNP [dm3] 2R_20130069_SNP [dm6]	T	C	4.085e^-4	0.782	INTERGENIC
3L	9038614	3L_9038614_SNP [dm3] 3L_9045514_SNP [dm6]	A	T	4.092e^-4	0.782	DOWNSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	8302817	3L_8302817_SNP [dm3] 3L_8309717_SNP [dm6]	T	C	4.104e^-4	0.782	UPSTREAM BI-1 DOWNSTREAM CG7185 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	13431045	X_13431045_SNP [dm3] X_13537012_SNP [dm6]	T	C	4.111e^-4	0.782	DOWNSTREAM CG15756 INTERGENIC
X	9302477	X_9302477_SNP [dm3] X_9408444_SNP [dm6]	T	A	4.112e^-4	0.782	INTRON mgl
2L	13935329	2L_13935329_DEL [dm3] 2L_13935329_DEL [dm6]	CCTTAGAAAGTTTATGTAAT...	TC	4.113e^-4	0.782	UPSTREAM CG16885 INTRON Ance-3
2L	9317792	2L_9317792_MNP [dm3] 2L_9317792_MNP [dm6]	TTG	GAA	4.120e^-4	0.782	INTERGENIC
2R	5332099	2R_5332099_SNP [dm3] 2R_9444594_SNP [dm6]	A	T	4.125e^-4	0.782	DOWNSTREAM CR45321 INTRON ced-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6422908	2L_6422908_SNP [dm3] 2L_6422908_SNP [dm6]	A	G	4.127e^-4	0.782	INTRON Tig
2R	19213077	2R_19213077_SNP [dm3] 2R_23325554_SNP [dm6]	T	C	4.130e^-4	0.782	SYNONYMOUS_CODING CG9861	TF binding site mE1_TFBS_inv
2R	14526520	2R_14526520_SNP [dm3] 2R_18639015_SNP [dm6]	G	A	4.133e^-4	0.782	UTR_5_PRIME CG30122 UPSTREAM tRNA:CR30227 DOWNSTREAM tRNA:G3:55E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	25909190	3R_25909190_SNP [dm3] 3R_30083468_SNP [dm6]	A	G	4.138e^-4	0.782	INTRON sima
3R	19192025	3R_19192025_SNP [dm3] 3R_23366303_SNP [dm6]	G	A	4.143e^-4	0.782	INTERGENIC
2R	17930382	2R_17930382_SNP [dm3] 2R_22042877_SNP [dm6]	G	A	4.144e^-4	0.782	UTR_5_PRIME PpD5
X	2440141	X_2440141_SNP [dm3] X_2546108_SNP [dm6]	G	A	4.154e^-4	0.782	UPSTREAM trol INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8524587	X_8524587_SNP [dm3] X_8630554_SNP [dm6]	G	T	4.166e^-4	0.782	UTR_3_PRIME oc
2L	4869689	2L_4869689_DEL [dm3] 2L_4869689_DEL [dm6]	GT	G	4.167e^-4	0.782	INTRON pog
2R	19794941	2R_19794941_SNP [dm3] 2R_23907418_SNP [dm6]	T	G	4.171e^-4	0.782	UPSTREAM kcc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7611856	2L_7611856_SNP [dm3] 2L_7611856_SNP [dm6]	A	T	4.172e^-4	0.782	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
3L	9637726	3L_9637726_SNP [dm3] 3L_9644626_SNP [dm6]	G	T	4.172e^-4	0.782	START_GAINED CG33696 UTR_5_PRIME CG33696 INTRON fry
3L	3922363	3L_3922363_INS [dm3] 3L_3922363_INS [dm6]	T	TT	4.178e^-4	0.782	INTRON Eip63F-1
2L	6302031	2L_6302031_SNP [dm3] 2L_6302031_SNP [dm6]	T	C	4.181e^-4	0.782	INTRON Ddr
3L	16562255	3L_16562255_SNP [dm3] 3L_16569155_SNP [dm6]	G	A	4.182e^-4	0.782	INTRON Mipp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5651766	2L_5651766_SNP [dm3] 2L_5651766_SNP [dm6]	C	T	4.195e^-4	0.782	NON_SYNONYMOUS_CODING CG31646
3L	10664332	3L_10664332_SNP [dm3] 3L_10671232_SNP [dm6]	T	C	4.195e^-4	0.782	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8549196	X_8549196_SNP [dm3] X_8655163_SNP [dm6]	A	T	4.206e^-4	0.782	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	3083545	2L_3083545_SNP [dm3] 2L_3083545_SNP [dm6]	C	T	4.209e^-4	0.782	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9317790	2L_9317790_SNP [dm3] 2L_9317790_SNP [dm6]	T	A	4.209e^-4	0.782	INTERGENIC
2R	12813568	2R_12813568_SNP [dm3] 2R_16926063_SNP [dm6]	C	T	4.210e^-4	0.782	INTRON Pkc53E
X	14679531	X_14679531_SNP [dm3] X_14785498_SNP [dm6]	G	C	4.212e^-4	0.782	SYNONYMOUS_CODING Ag5r UPSTREAM CR45522
3L	7171430	3L_7171430_SNP [dm3] 3L_7178330_SNP [dm6]	T	A	4.215e^-4	0.782	INTRON Dscam2
X	4587505	X_4587505_SNP [dm3] X_4693472_SNP [dm6]	T	G	4.216e^-4	0.782	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16812557	3L_16812557_SNP [dm3] 3L_16819457_SNP [dm6]	C	T	4.216e^-4	0.782	UTR_3_PRIME nudC INTRON CG13024
2R	8491991	2R_8491991_SNP [dm3] 2R_12604486_SNP [dm6]	T	A	4.227e^-4	0.782	INTRON Amph
X	7147085	X_7147085_INS [dm3] X_7253052_INS [dm6]	A	AT	4.230e^-4	0.782	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	12362078	2R_12362078_SNP [dm3] 2R_16474573_SNP [dm6]	G	T	4.241e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2703208	2L_2703208_SNP [dm3] 2L_2703208_SNP [dm6]	G	T	4.242e^-4	0.782	INTRON CG31690

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.139e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.4908	0.0642

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1930 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	9764249	3R_9764249_SNP [dm3] 3R_13938527_SNP [dm6]	A	G	2.926e^-7	0.549	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	6797928	2R_6797928_SNP [dm3] 2R_10910423_SNP [dm6]	T	A	1.230e^-6	0.788	NON_SYNONYMOUS_CODING Obp47a
3L	3694588	3L_3694588_SNP [dm3] 3L_3694588_SNP [dm6]	T	G	1.463e^-6	0.788	UPSTREAM CR43485 INTERGENIC
2R	18753662	2R_18753662_SNP [dm3] 2R_22866139_SNP [dm6]	C	A	1.680e^-6	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3542789	X_3542789_SNP [dm3] X_3648756_SNP [dm6]	C	T	2.154e^-6	0.808	INTRON AstA-R1
X	8112007	X_8112007_SNP [dm3] X_8217974_SNP [dm6]	G	A	3.150e^-6	0.94	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	5778340	2L_5778340_SNP [dm3] 2L_5778340_SNP [dm6]	T	C	3.932e^-6	0.94	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1182984	2L_1182984_SNP [dm3] 2L_1182984_SNP [dm6]	G	T	4.235e^-6	0.94	SYNONYMOUS_CODING CG5126 DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19888064	2R_19888064_SNP [dm3] 2R_24000541_SNP [dm6]	G	A	4.511e^-6	0.94	SPLICE_SITE_REGION Unc-89 SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1140510	2L_1140510_SNP [dm3] 2L_1140510_SNP [dm6]	A	T	5.369e^-6	0.959	UTR_3_PRIME CG4577
3L	3694218	3L_3694218_SNP [dm3] 3L_3694218_SNP [dm6]	C	T	6.290e^-6	0.959	EXON CR43485
2R	18617458	2R_18617458_SNP [dm3] 2R_22729953_SNP [dm6]	A	G	6.599e^-6	0.959	SYNONYMOUS_CODING jbug UPSTREAM jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2656258	2L_2656258_SNP [dm3] 2L_2656258_SNP [dm6]	G	T	7.020e^-6	0.959	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a & 1 other
2L	6328844	2L_6328844_SNP [dm3] 2L_6328844_SNP [dm6]	G	A	7.914e^-6	0.959	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
X	2871577	X_2871577_SNP [dm3] X_2977544_SNP [dm6]	T	A	1.080e^-5	0.959	INTRON kirre
2L	16448606	2L_16448606_SNP [dm3] 2L_16448606_SNP [dm6]	G	A	1.153e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
X	1683198	X_1683198_SNP [dm3] X_1789165_SNP [dm6]	C	T	1.161e^-5	0.959	UPSTREAM CG32806 & 1 other INTRON CG42666
X	4921109	X_4921109_SNP [dm3] X_5027076_SNP [dm6]	T	C	1.206e^-5	0.959	INTRON CR44833
3L	14533805	3L_14533805_SNP [dm3] 3L_14540705_SNP [dm6]	T	G	1.244e^-5	0.959	DOWNSTREAM CG9238 & 1 other INTERGENIC
X	13214476	X_13214476_DEL [dm3] X_13320443_DEL [dm6]	TATATTTTTCTAAAC...	T	1.249e^-5	0.959	UPSTREAM IP3K2 INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	9877064	3R_9877064_SNP [dm3] 3R_14051342_SNP [dm6]	G	T	1.265e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14787884	X_14787884_SNP [dm3] X_14893851_SNP [dm6]	T	C	1.269e^-5	0.959	INTRON Flo2 & 1 other
2R	6797934	2R_6797934_SNP [dm3] 2R_10910429_SNP [dm6]	A	T	1.278e^-5	0.959	NON_SYNONYMOUS_CODING Obp47a
X	18322813	X_18322813_SNP [dm3] X_18428780_SNP [dm6]	A	C	1.295e^-5	0.959	INTERGENIC
2L	10405275	2L_10405275_SNP [dm3] 2L_10405275_SNP [dm6]	T	A	1.481e^-5	0.959	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25616054	3R_25616054_SNP [dm3] 3R_29790332_SNP [dm6]	A	G	1.481e^-5	0.959	SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
3R	19775495	3R_19775495_SNP [dm3] 3R_23949773_SNP [dm6]	C	G	1.505e^-5	0.959	INTERGENIC
X	8524587	X_8524587_SNP [dm3] X_8630554_SNP [dm6]	G	T	1.608e^-5	0.959	UTR_3_PRIME oc
2L	16448666	2L_16448666_SNP [dm3] 2L_16448666_SNP [dm6]	C	A	1.632e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	12248143	2L_12248143_SNP [dm3] 2L_12248143_SNP [dm6]	A	T	1.641e^-5	0.959	INTRON aret
2L	3931241	2L_3931241_SNP [dm3] 2L_3931241_SNP [dm6]	C	T	1.715e^-5	0.959	INTRON fred
2R	9905425	2R_9905425_SNP [dm3] 2R_14017920_SNP [dm6]	C	A	1.723e^-5	0.959	INTRON mam
X	12378342	X_12378342_SNP [dm3] X_12484309_SNP [dm6]	T	A	1.940e^-5	0.959	INTERGENIC
X	10199107	X_10199107_SNP [dm3] X_10305074_SNP [dm6]	T	A	1.946e^-5	0.959	INTRON alpha-Man-I
2L	9110426	2L_9110426_SNP [dm3] 2L_9110426_SNP [dm6]	A	G	2.136e^-5	0.959	INTERGENIC
3R	21901135	3R_21901135_SNP [dm3] 3R_26075413_SNP [dm6]	A	C	2.155e^-5	0.959	INTERGENIC
3R	21901144	3R_21901144_SNP [dm3] 3R_26075422_SNP [dm6]	G	A	2.155e^-5	0.959	INTERGENIC
3L	5905545	3L_5905545_SNP [dm3] 3L_5912445_SNP [dm6]	A	T	2.266e^-5	0.959	INTRON CG13288
2R	16423067	2R_16423067_SNP [dm3] 2R_20535562_SNP [dm6]	A	C	2.271e^-5	0.959	UTR_3_PRIME CG18067 DOWNSTREAM CG18067
3L	3696597	3L_3696597_SNP [dm3] 3L_3696597_SNP [dm6]	C	A	2.303e^-5	0.959	INTERGENIC
2R	19888080	2R_19888080_INS [dm3] 2R_24000557_INS [dm6]	C	CGGC	2.529e^-5	0.959	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12248153	2L_12248153_SNP [dm3] 2L_12248153_SNP [dm6]	T	G	2.606e^-5	0.959	INTRON aret
2L	16448571	2L_16448571_SNP [dm3] 2L_16448571_SNP [dm6]	A	G	2.612e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2R	6794401	2R_6794401_SNP [dm3] 2R_10906896_SNP [dm6]	C	T	2.640e^-5	0.959	INTERGENIC
3L	10978340	3L_10978340_SNP [dm3] 3L_10985240_SNP [dm6]	T	A	2.750e^-5	0.959	INTRON klu	TF binding site BDTNP1_TFBS_dl
2R	6795162	2R_6795162_SNP [dm3] 2R_10907657_SNP [dm6]	C	T	2.757e^-5	0.959	INTERGENIC
2R	9904777	2R_9904777_SNP [dm3] 2R_14017272_SNP [dm6]	C	T	2.783e^-5	0.959	INTRON mam
X	19080490	X_19080490_SNP [dm3] X_19186457_SNP [dm6]	T	A	2.797e^-5	0.959	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16448581	2L_16448581_SNP [dm3] 2L_16448581_SNP [dm6]	T	A	2.891e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2R	17366157	2R_17366157_SNP [dm3] 2R_21478652_SNP [dm6]	A	T	2.894e^-5	0.959	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	20210236	3R_20210236_SNP [dm3] 3R_24384514_SNP [dm6]	A	G	2.966e^-5	0.959	SYNONYMOUS_CODING CG17780
2L	3186701	2L_3186701_SNP [dm3] 2L_3186701_SNP [dm6]	A	G	3.060e^-5	0.959	INTRON CG34393
2L	12136182	2L_12136182_SNP [dm3] 2L_12136182_SNP [dm6]	C	G	3.170e^-5	0.959	INTERGENIC
3L	18868551	3L_18868551_SNP [dm3] 3L_18875451_SNP [dm6]	C	T	3.289e^-5	0.959	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
2R	15832281	2R_15832281_SNP [dm3] 2R_19944776_SNP [dm6]	A	T	3.297e^-5	0.959	SYNONYMOUS_CODING CG43195 DOWNSTREAM CG42690 & 1 other INTRON CG43195
2L	10172322	2L_10172322_SNP [dm3] 2L_10172322_SNP [dm6]	G	T	3.436e^-5	0.959	UPSTREAM CG13137 INTRON CG44153
3R	25067542	3R_25067542_SNP [dm3] 3R_29241820_SNP [dm6]	G	A	3.531e^-5	0.959	SYNONYMOUS_CODING CG31445
2R	16134551	2R_16134551_SNP [dm3] 2R_20247046_SNP [dm6]	C	T	3.567e^-5	0.959	SYNONYMOUS_CODING ppk6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16134577	2R_16134577_SNP [dm3] 2R_20247072_SNP [dm6]	A	C	3.567e^-5	0.959	INTRON ppk6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9904509	2R_9904509_SNP [dm3] 2R_14017004_SNP [dm6]	C	T	3.660e^-5	0.959	INTRON mam
X	1681033	X_1681033_SNP [dm3] X_1787000_SNP [dm6]	C	T	3.717e^-5	0.959	UTR_3_PRIME Adar INTRON CG42666
2R	6737612	2R_6737612_SNP [dm3] 2R_10850107_SNP [dm6]	C	T	3.755e^-5	0.959	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
X	3545242	X_3545242_INS [dm3] X_3651209_INS [dm6]	A	ATT	3.850e^-5	0.959	INTRON AstA-R1
X	3545244	X_3545244_SNP [dm3] X_3651211_SNP [dm6]	A	T	3.873e^-5	0.959	INTRON AstA-R1
3L	9298698	3L_9298698_SNP [dm3] 3L_9305598_SNP [dm6]	A	G	3.905e^-5	0.959	INTERGENIC
X	6310679	X_6310679_SNP [dm3] X_6416646_SNP [dm6]	A	C	3.917e^-5	0.959	INTERGENIC
2L	16448702	2L_16448702_SNP [dm3] 2L_16448702_SNP [dm6]	G	A	3.970e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	9667742	2L_9667742_SNP [dm3] 2L_9667742_SNP [dm6]	G	T	3.985e^-5	0.959	INTERGENIC
X	12378510	X_12378510_SNP [dm3] X_12484477_SNP [dm6]	C	G	4.160e^-5	0.959	INTERGENIC
3R	21537712	3R_21537712_SNP [dm3] 3R_25711990_SNP [dm6]	C	T	4.174e^-5	0.959	INTRON LpR2	TF binding site mE1_TFBS_HSA
2L	1180005	2L_1180005_SNP [dm3] 2L_1180005_SNP [dm6]	C	G	4.206e^-5	0.959	SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896
X	3544862	X_3544862_SNP [dm3] X_3650829_SNP [dm6]	A	C	4.298e^-5	0.959	INTRON AstA-R1
2R	16132604	2R_16132604_INS [dm3] 2R_20245099_INS [dm6]	C	CC	4.300e^-5	0.959	DOWNSTREAM ppk6 INTRON CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15468385	2L_15468385_SNP [dm3] 2L_15468385_SNP [dm6]	T	G	4.333e^-5	0.959	DOWNSTREAM CR45353 INTERGENIC
2L	3211196	2L_3211196_SNP [dm3] 2L_3211196_SNP [dm6]	C	T	4.485e^-5	0.959	DOWNSTREAM CR45336 INTERGENIC
3L	14600666	3L_14600666_SNP [dm3] 3L_14607566_SNP [dm6]	C	T	4.485e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14600659	3L_14600659_SNP [dm3] 3L_14607559_SNP [dm6]	A	G	4.496e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3694604	3L_3694604_SNP [dm3] 3L_3694604_SNP [dm6]	C	A	4.524e^-5	0.959	UPSTREAM CR43485 INTERGENIC
3L	16169544	3L_16169544_SNP [dm3] 3L_16176444_SNP [dm6]	T	C	4.541e^-5	0.959	UPSTREAM CR45754 DOWNSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10212289	3R_10212289_SNP [dm3] 3R_14386567_SNP [dm6]	T	G	4.565e^-5	0.959	INTERGENIC
X	2365363	X_2365363_SNP [dm3] X_2471330_SNP [dm6]	A	C	4.586e^-5	0.959	INTRON trol
2L	12136213	2L_12136213_SNP [dm3] 2L_12136213_SNP [dm6]	C	T	4.594e^-5	0.959	INTERGENIC
2R	17846600	2R_17846600_SNP [dm3] 2R_21959095_SNP [dm6]	G	A	4.646e^-5	0.959	INTERGENIC
3L	10063568	3L_10063568_SNP [dm3] 3L_10070468_SNP [dm6]	C	G	4.717e^-5	0.959	INTRON dpr6
2R	9162187	2R_9162187_SNP [dm3] 2R_13274682_SNP [dm6]	C	A	4.719e^-5	0.959	INTRON Dh31-R
3L	20142410	3L_20142410_SNP [dm3] 3L_20149310_SNP [dm6]	A	T	4.780e^-5	0.959	DOWNSTREAM CG42674 INTERGENIC
X	1679533	X_1679533_SNP [dm3] X_1785500_SNP [dm6]	G	A	4.958e^-5	0.959	UTR_3_PRIME Adar INTRON CG42666
2R	11450082	2R_11450082_SNP [dm3] 2R_15562577_SNP [dm6]	G	T	5.046e^-5	0.959	DOWNSTREAM CG8195 & 1 other INTERGENIC
3R	21898728	3R_21898728_SNP [dm3] 3R_26073006_SNP [dm6]	G	C	5.064e^-5	0.959	INTERGENIC
2R	3314614	2R_3314614_SNP [dm3] 2R_7427109_SNP [dm6]	A	C	5.095e^-5	0.959	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9667721	2L_9667721_SNP [dm3] 2L_9667721_SNP [dm6]	T	A	5.232e^-5	0.959	INTERGENIC
3R	23726020	3R_23726020_SNP [dm3] 3R_27900298_SNP [dm6]	G	A	5.271e^-5	0.959	INTRON CG34353
2L	6532788	2L_6532788_SNP [dm3] 2L_6532788_SNP [dm6]	C	G	5.298e^-5	0.959	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13241474	2R_13241474_SNP [dm3] 2R_17353969_SNP [dm6]	C	T	5.309e^-5	0.959	DOWNSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl
2R	16134983	2R_16134983_SNP [dm3] 2R_20247478_SNP [dm6]	T	A	5.360e^-5	0.959	SYNONYMOUS_CODING ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
2R	18241583	2R_18241583_SNP [dm3] 2R_22354078_SNP [dm6]	T	A	5.417e^-5	0.959	INTRON Liprin-gamma
2L	1140456	2L_1140456_SNP [dm3] 2L_1140456_SNP [dm6]	C	T	5.452e^-5	0.959	UTR_3_PRIME CG4577
3R	21436553	3R_21436553_DEL [dm3] 3R_25610831_DEL [dm6]	TTGAGTCGATATT...	T	5.519e^-5	0.959	DOWNSTREAM Npl4 INTERGENIC
2R	18594505	2R_18594505_SNP [dm3] 2R_22707000_SNP [dm6]	A	T	5.530e^-5	0.959	NON_SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
X	2385953	X_2385953_SNP [dm3] X_2491920_SNP [dm6]	A	C	5.633e^-5	0.959	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	14579000	3L_14579000_SNP [dm3] 3L_14585900_SNP [dm6]	T	A	5.650e^-5	0.959	INTRON HGTX	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8308670	3L_8308670_SNP [dm3] 3L_8315570_SNP [dm6]	T	G	5.760e^-5	0.959	UPSTREAM CG7185 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21901129	3R_21901129_SNP [dm3] 3R_26075407_SNP [dm6]	A	C	6.043e^-5	0.959	INTERGENIC
3L	14533693	3L_14533693_SNP [dm3] 3L_14540593_SNP [dm6]	T	C	6.061e^-5	0.959	DOWNSTREAM CG9238 & 1 other INTERGENIC
2R	19885864	2R_19885864_SNP [dm3] 2R_23998341_SNP [dm6]	G	A	6.151e^-5	0.959	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5387841	2R_5387841_SNP [dm3] 2R_9500336_SNP [dm6]	T	G	6.287e^-5	0.959	INTRON Wnt2
2R	14742987	2R_14742987_SNP [dm3] 2R_18855482_SNP [dm6]	C	T	6.332e^-5	0.959	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	9148755	2R_9148755_SNP [dm3] 2R_13261250_SNP [dm6]	T	A	6.340e^-5	0.959	INTRON CG42319
3L	9329452	3L_9329452_SNP [dm3] 3L_9336352_SNP [dm6]	A	G	6.356e^-5	0.959	SYNONYMOUS_CODING PGRP-LA UTR_5_PRIME PGRP-LA INTRON PGRP-LA
2R	16134975	2R_16134975_SNP [dm3] 2R_20247470_SNP [dm6]	T	C	6.487e^-5	0.959	NON_SYNONYMOUS_CODING ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
2R	16135001	2R_16135001_SNP [dm3] 2R_20247496_SNP [dm6]	C	T	6.487e^-5	0.959	SYNONYMOUS_CODING ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
X	1682389	X_1682389_SNP [dm3] X_1788356_SNP [dm6]	C	T	6.540e^-5	0.959	DOWNSTREAM mir-981 & 1 other INTRON CG42666
3R	14188618	3R_14188618_SNP [dm3] 3R_18362896_SNP [dm6]	G	C	6.671e^-5	0.959	NON_SYNONYMOUS_CODING CG7669	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13933930	X_13933930_SNP [dm3] X_14039897_SNP [dm6]	T	A	6.732e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2946864	X_2946864_SNP [dm3] X_3052831_SNP [dm6]	G	A	6.854e^-5	0.959	INTRON kirre
3R	22672981	3R_22672981_SNP [dm3] 3R_26847259_SNP [dm6]	C	G	6.898e^-5	0.959	INTRON Lerp
2L	21281612	2L_21281612_SNP [dm3] 2L_21281612_SNP [dm6]	A	T	6.975e^-5	0.959	UTR_3_PRIME CG8671
3L	3694189	3L_3694189_SNP [dm3] 3L_3694189_SNP [dm6]	T	C	6.985e^-5	0.959	EXON CR43485
3R	9867842	3R_9867842_SNP [dm3] 3R_14042120_SNP [dm6]	T	A	7.006e^-5	0.959	INTERGENIC
3L	14046236	3L_14046236_SNP [dm3] 3L_14053136_SNP [dm6]	A	G	7.073e^-5	0.959	UPSTREAM CG43986 & 2 others DOWNSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	9427619	3L_9427619_SNP [dm3] 3L_9434519_SNP [dm6]	C	T	7.077e^-5	0.959	UTR_3_PRIME CG42526 INTRON MTF-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1140467	2L_1140467_SNP [dm3] 2L_1140467_SNP [dm6]	G	C	7.146e^-5	0.959	UTR_3_PRIME CG4577
2R	9148753	2R_9148753_SNP [dm3] 2R_13261248_SNP [dm6]	G	A	7.210e^-5	0.959	INTRON CG42319
X	19279895	X_19279895_SNP [dm3] X_19385862_SNP [dm6]	C	T	7.307e^-5	0.959	INTRON kek5
X	19080520	X_19080520_SNP [dm3] X_19186487_SNP [dm6]	G	A	7.408e^-5	0.959	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7145114	2L_7145114_SNP [dm3] 2L_7145114_SNP [dm6]	A	T	7.434e^-5	0.959	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16134790	2R_16134790_SNP [dm3] 2R_20247285_SNP [dm6]	G	A	7.559e^-5	0.959	SYNONYMOUS_CODING ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
2R	16135038	2R_16135038_SNP [dm3] 2R_20247533_SNP [dm6]	A	T	7.559e^-5	0.959	UTR_5_PRIME ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
2R	16135045	2R_16135045_SNP [dm3] 2R_20247540_SNP [dm6]	T	G	7.559e^-5	0.959	UTR_5_PRIME ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
2R	16135046	2R_16135046_SNP [dm3] 2R_20247541_SNP [dm6]	T	G	7.559e^-5	0.959	UTR_5_PRIME ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
3L	14600673	3L_14600673_SNP [dm3] 3L_14607573_SNP [dm6]	A	G	7.586e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	18753620	2R_18753620_SNP [dm3] 2R_22866097_SNP [dm6]	C	A	7.688e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6792712	2R_6792712_SNP [dm3] 2R_10905207_SNP [dm6]	A	T	7.693e^-5	0.959	INTRON CG12943
3R	2676096	3R_2676096_SNP [dm3] 3R_6850374_SNP [dm6]	G	T	7.737e^-5	0.959	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26473223	3R_26473223_SNP [dm3] 3R_30647501_SNP [dm6]	C	A	7.748e^-5	0.959	SYNONYMOUS_CODING PH4alphaPV	TF binding site mE1_TFBS_sens
2R	16022097	2R_16022097_INS [dm3] 2R_20134592_INS [dm6]	T	TT	7.771e^-5	0.959	INTERGENIC
2R	9262073	2R_9262073_SNP [dm3] 2R_13374568_SNP [dm6]	A	T	7.859e^-5	0.959	INTERGENIC
X	4585404	X_4585404_SNP [dm3] X_4691371_SNP [dm6]	T	A	7.915e^-5	0.959	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19300276	X_19300276_SNP [dm3] X_19406243_SNP [dm6]	A	T	7.961e^-5	0.959	INTRON kek5
X	20340226	X_20340226_SNP [dm3] X_20469199_SNP [dm6]	C	T	8.311e^-5	0.959	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D
3L	10454597	3L_10454597_SNP [dm3] 3L_10461497_SNP [dm6]	C	G	8.321e^-5	0.959	NON_SYNONYMOUS_CODING Gem3
X	11730809	X_11730809_DEL [dm3] X_11836776_DEL [dm6]	AA	A	8.369e^-5	0.959	UTR_3_PRIME rudhira UPSTREAM CR43908 DOWNSTREAM CG15741
2R	9262143	2R_9262143_SNP [dm3] 2R_13374638_SNP [dm6]	T	C	8.554e^-5	0.959	INTERGENIC
X	12001556	X_12001556_SNP [dm3] X_12107523_SNP [dm6]	T	A	8.583e^-5	0.959	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
2R	16132612	2R_16132612_SNP [dm3] 2R_20245107_SNP [dm6]	A	G	8.705e^-5	0.959	DOWNSTREAM ppk6 INTRON CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16132613	2R_16132613_SNP [dm3] 2R_20245108_SNP [dm6]	G	C	8.705e^-5	0.959	DOWNSTREAM ppk6 INTRON CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	3003369	X_3003369_DEL [dm3] X_3109336_DEL [dm6]	TT	T	8.715e^-5	0.959	INTRON kirre
2L	7999062	2L_7999062_SNP [dm3] 2L_7999062_SNP [dm6]	C	T	8.724e^-5	0.959	START_GAINED Sirup UTR_5_PRIME Sirup UPSTREAM CG7227 DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	3454444	3L_3454444_DEL [dm3] 3L_3454444_DEL [dm6]	AA	A	8.755e^-5	0.959	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23362466	3R_23362466_SNP [dm3] 3R_27536744_SNP [dm6]	T	A	8.833e^-5	0.959	EXON CR44289
2R	6796501	2R_6796501_SNP [dm3] 2R_10908996_SNP [dm6]	A	G	8.918e^-5	0.959	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19215168	2R_19215168_SNP [dm3] 2R_23327645_SNP [dm6]	T	A	8.931e^-5	0.959	UPSTREAM CG30417 DOWNSTREAM CG9861 INTERGENIC
2L	3986225	2L_3986225_SNP [dm3] 2L_3986225_SNP [dm6]	C	T	8.958e^-5	0.959	INTRON fred
X	14116599	X_14116599_SNP [dm3] X_14222566_SNP [dm6]	A	T	9.015e^-5	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
X	14116601	X_14116601_INS [dm3] X_14222568_INS [dm6]	A	CT	9.015e^-5	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3L	14046238	3L_14046238_SNP [dm3] 3L_14053138_SNP [dm6]	A	G	9.021e^-5	0.959	UPSTREAM CG43986 & 2 others DOWNSTREAM CG6833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	11841394	X_11841394_SNP [dm3] X_11947361_SNP [dm6]	G	A	9.024e^-5	0.959	INTRON cac
2L	2258074	2L_2258074_SNP [dm3] 2L_2258074_SNP [dm6]	T	G	9.105e^-5	0.959	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6795892	2R_6795892_SNP [dm3] 2R_10908387_SNP [dm6]	T	C	9.115e^-5	0.959	INTERGENIC
2L	18076122	2L_18076122_SNP [dm3] 2L_18076122_SNP [dm6]	T	C	9.219e^-5	0.959	INTERGENIC
X	11841338	X_11841338_SNP [dm3] X_11947305_SNP [dm6]	C	A	9.308e^-5	0.959	INTRON cac
2R	18597681	2R_18597681_SNP [dm3] 2R_22710176_SNP [dm6]	T	A	9.472e^-5	0.959	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
2R	6799140	2R_6799140_SNP [dm3] 2R_10911635_SNP [dm6]	G	A	9.508e^-5	0.959	INTERGENIC
3R	5111543	3R_5111543_SNP [dm3] 3R_9285821_SNP [dm6]	G	A	9.538e^-5	0.959	INTERGENIC
3L	3696843	3L_3696843_SNP [dm3] 3L_3696843_SNP [dm6]	C	A	9.607e^-5	0.959	INTERGENIC
2R	15723084	2R_15723084_SNP [dm3] 2R_19835579_SNP [dm6]	A	G	9.617e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10557363	2R_10557363_SNP [dm3] 2R_14669858_SNP [dm6]	T	C	9.637e^-5	0.959	NON_SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866
2L	11164867	2L_11164867_SNP [dm3] 2L_11164867_SNP [dm6]	T	A	9.639e^-5	0.959	INTRON Ca-beta
3L	6202880	3L_6202880_SNP [dm3] 3L_6209780_SNP [dm6]	G	C	9.654e^-5	0.959	NON_SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1177101	2L_1177101_SNP [dm3] 2L_1177101_SNP [dm6]	C	T	9.699e^-5	0.959	SYNONYMOUS_CODING CG4887 UPSTREAM CG4896
3L	9052955	3L_9052955_SNP [dm3] 3L_9059855_SNP [dm6]	C	T	9.753e^-5	0.959	INTRON Argk
X	2871538	X_2871538_SNP [dm3] X_2977505_SNP [dm6]	G	A	9.762e^-5	0.959	INTRON kirre
3L	22165507	3L_22165507_SNP [dm3] 3L_22172407_SNP [dm6]	C	T	9.771e^-5	0.959	INTRON olf413
2R	18593903	2R_18593903_SNP [dm3] 2R_22706398_SNP [dm6]	G	A	9.938e^-5	0.959	SYNONYMOUS_CODING Obp58c UPSTREAM Obp58d DOWNSTREAM Obp58b	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26037521	3R_26037521_SNP [dm3] 3R_30211799_SNP [dm6]	T	A	1.002e^-4	0.959	UPSTREAM CecA2 DOWNSTREAM CecA1 & 1 other INTERGENIC
X	10198903	X_10198903_SNP [dm3] X_10304870_SNP [dm6]	A	G	1.005e^-4	0.959	INTRON alpha-Man-I
3L	8309479	3L_8309479_SNP [dm3] 3L_8316379_SNP [dm6]	T	C	1.016e^-4	0.959	UPSTREAM CG7185 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16131966	2R_16131966_SNP [dm3] 2R_20244461_SNP [dm6]	G	A	1.018e^-4	0.959	INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16131975	2R_16131975_DEL [dm3] 2R_20244470_DEL [dm6]	TTATTT	G	1.018e^-4	0.959	INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18017984	2R_18017984_SNP [dm3] 2R_22130479_SNP [dm6]	G	A	1.018e^-4	0.959	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
2L	3793091	2L_3793091_SNP [dm3] 2L_3793091_SNP [dm6]	T	C	1.030e^-4	0.959	SYNONYMOUS_CODING CG3921
3L	8304838	3L_8304838_SNP [dm3] 3L_8311738_SNP [dm6]	A	T	1.037e^-4	0.959	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5853174	X_5853174_SNP [dm3] X_5959141_SNP [dm6]	G	A	1.038e^-4	0.959	SYNONYMOUS_CODING fs_1_M3 DOWNSTREAM CG6067	TF binding site mE1_TFBS_HSA
3L	2674565	3L_2674565_SNP [dm3] 3L_2674565_SNP [dm6]	C	G	1.046e^-4	0.959	INTRON Fife
2L	10443313	2L_10443313_SNP [dm3] 2L_10443313_SNP [dm6]	G	A	1.055e^-4	0.959	INTRON loh	TF binding site BDTNP1_TFBS_twi
2R	19604770	2R_19604770_SNP [dm3] 2R_23717247_SNP [dm6]	G	T	1.058e^-4	0.959	INTRON Sesn	TF binding site mE1_TFBS_chinmo
3L	10989931	3L_10989931_SNP [dm3] 3L_10996831_SNP [dm6]	G	A	1.059e^-4	0.959	INTRON klu	TF binding site BDTNP1_TFBS_da
X	11841388	X_11841388_INS [dm3] X_11947355_INS [dm6]	A	ACAAAA	1.067e^-4	0.959	INTRON cac
2L	3663884	2L_3663884_SNP [dm3] 2L_3663884_SNP [dm6]	G	A	1.070e^-4	0.959	INTRON CG34340
3L	6291184	3L_6291184_SNP [dm3] 3L_6298084_SNP [dm6]	A	C	1.071e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16131984	2R_16131984_SNP [dm3] 2R_20244479_SNP [dm6]	T	G	1.074e^-4	0.959	SPLICE_SITE_REGION CG11208 INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16131986	2R_16131986_SNP [dm3] 2R_20244481_SNP [dm6]	T	C	1.074e^-4	0.959	SPLICE_SITE_REGION CG11208 INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7999030	2L_7999030_SNP [dm3] 2L_7999030_SNP [dm6]	C	T	1.076e^-4	0.959	START_GAINED Sirup UTR_5_PRIME Sirup UPSTREAM CG7227 DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	13162283	3R_13162283_SNP [dm3] 3R_17336561_SNP [dm6]	A	G	1.081e^-4	0.959	INTRON beat-IIa
2R	16132024	2R_16132024_SNP [dm3] 2R_20244519_SNP [dm6]	C	T	1.086e^-4	0.959	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1026068	3L_1026068_SNP [dm3] 3L_1026068_SNP [dm6]	G	A	1.088e^-4	0.959	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16132184	2R_16132184_SNP [dm3] 2R_20244679_SNP [dm6]	C	G	1.106e^-4	0.959	NON_SYNONYMOUS_CODING CG11208 SPLICE_SITE_REGION CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25627938	3R_25627938_SNP [dm3] 3R_29802216_SNP [dm6]	A	G	1.108e^-4	0.959	SYNONYMOUS_CODING CG7834 UPSTREAM CG7789 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	10197407	3R_10197407_SNP [dm3] 3R_14371685_SNP [dm6]	T	C	1.110e^-4	0.959	INTRON NK7.1 EXON snoRNA:Me18S-G1189
2L	3986222	2L_3986222_SNP [dm3] 2L_3986222_SNP [dm6]	A	T	1.115e^-4	0.959	INTRON fred
2R	19215173	2R_19215173_SNP [dm3] 2R_23327650_SNP [dm6]	A	G	1.120e^-4	0.959	UPSTREAM CG30417 DOWNSTREAM CG9861 INTERGENIC
4	659042	4_659042_SNP [dm3] 4_638416_SNP [dm6]	T	A	1.123e^-4	0.959	DOWNSTREAM CR44028 INTRON CG9935	transposable element FlyBase
3L	3807902	3L_3807902_SNP [dm3] 3L_3807902_SNP [dm6]	C	A	1.123e^-4	0.959	SYNONYMOUS_CODING IntS10	TF binding site mE1_TFBS_sens
2R	6798192	2R_6798192_SNP [dm3] 2R_10910687_SNP [dm6]	C	T	1.128e^-4	0.959	DOWNSTREAM Obp47a INTERGENIC
X	3543691	X_3543691_SNP [dm3] X_3649658_SNP [dm6]	C	G	1.133e^-4	0.959	INTRON AstA-R1
2L	12248082	2L_12248082_SNP [dm3] 2L_12248082_SNP [dm6]	G	T	1.134e^-4	0.959	INTRON aret
2R	6792710	2R_6792710_SNP [dm3] 2R_10905205_SNP [dm6]	A	T	1.135e^-4	0.959	INTRON CG12943
X	20340211	X_20340211_SNP [dm3] X_20469184_SNP [dm6]	C	A	1.151e^-4	0.959	SYNONYMOUS_CODING GstT3 DOWNSTREAM RhoGAP19D
2R	16038296	2R_16038296_SNP [dm3] 2R_20150791_SNP [dm6]	C	T	1.153e^-4	0.959	EXON CR45229
3L	13552217	3L_13552217_SNP [dm3] 3L_13559117_SNP [dm6]	A	G	1.154e^-4	0.959	INTRON bru-3
3L	2852972	3L_2852972_SNP [dm3] 3L_2852972_SNP [dm6]	A	T	1.157e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3694083	3L_3694083_SNP [dm3] 3L_3694083_SNP [dm6]	C	T	1.158e^-4	0.959	EXON CR43485
2L	1248209	2L_1248209_DEL [dm3] 2L_1248209_DEL [dm6]	TTCCCCG	T	1.160e^-4	0.959	INTERGENIC
2L	21067097	2L_21067097_SNP [dm3] 2L_21067097_SNP [dm6]	T	C	1.170e^-4	0.959	INTRON CG9265
2R	6797836	2R_6797836_SNP [dm3] 2R_10910331_SNP [dm6]	A	C	1.174e^-4	0.959	NON_SYNONYMOUS_CODING Obp47a
2R	18617501	2R_18617501_SNP [dm3] 2R_22729996_SNP [dm6]	A	G	1.178e^-4	0.959	SYNONYMOUS_CODING jbug UPSTREAM jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9314645	2R_9314645_SNP [dm3] 2R_13427140_SNP [dm6]	G	A	1.184e^-4	0.959	INTRON CG42321	TF binding site BDTNP1_TFBS_twi
2L	4232158	2L_4232158_SNP [dm3] 2L_4232158_SNP [dm6]	T	A	1.189e^-4	0.959	INTERGENIC
X	12907478	X_12907478_SNP [dm3] X_13013445_SNP [dm6]	T	C	1.190e^-4	0.959	INTRON rad
2L	2798958	2L_2798958_SNP [dm3] 2L_2798958_SNP [dm6]	G	T	1.197e^-4	0.959	DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl
3R	22419882	3R_22419882_SNP [dm3] 3R_26594160_SNP [dm6]	G	A	1.198e^-4	0.959	INTRON scrib
X	2646695	X_2646695_SNP [dm3] X_2752662_SNP [dm6]	A	G	1.200e^-4	0.959	INTRON kirre
2R	18461551	2R_18461551_SNP [dm3] 2R_22574046_SNP [dm6]	T	C	1.209e^-4	0.959	INTRON dnr1
2L	2656157	2L_2656157_SNP [dm3] 2L_2656157_SNP [dm6]	C	G	1.226e^-4	0.959	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a
3L	19318767	3L_19318767_SNP [dm3] 3L_19325667_SNP [dm6]	G	T	1.229e^-4	0.959	INTRON pip
2L	7775062	2L_7775062_SNP [dm3] 2L_7775062_SNP [dm6]	A	C	1.242e^-4	0.959	DOWNSTREAM CG7179 & 1 other INTERGENIC
2R	6491144	2R_6491144_SNP [dm3] 2R_10603639_SNP [dm6]	G	A	1.242e^-4	0.959	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	2438965	X_2438965_SNP [dm3] X_2544932_SNP [dm6]	G	T	1.252e^-4	0.959	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
3R	7651238	3R_7651238_SNP [dm3] 3R_11825516_SNP [dm6]	C	T	1.253e^-4	0.959	INTRON CG6959
2R	16017574	2R_16017574_SNP [dm3] 2R_20130069_SNP [dm6]	T	C	1.255e^-4	0.959	INTERGENIC
3L	2852975	3L_2852975_SNP [dm3] 3L_2852975_SNP [dm6]	A	T	1.288e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13228228	X_13228228_SNP [dm3] X_13334195_SNP [dm6]	C	A	1.292e^-4	0.959	INTERGENIC
X	6434107	X_6434107_SNP [dm3] X_6540074_SNP [dm6]	A	G	1.292e^-4	0.959	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2806059	3R_2806059_SNP [dm3] 3R_6980337_SNP [dm6]	A	T	1.309e^-4	0.959	INTRON Antp
X	13228235	X_13228235_SNP [dm3] X_13334202_SNP [dm6]	T	A	1.313e^-4	0.959	INTERGENIC
3R	9476382	3R_9476382_SNP [dm3] 3R_13650660_SNP [dm6]	G	T	1.321e^-4	0.959	INTRON rin
X	9217861	X_9217861_SNP [dm3] X_9323828_SNP [dm6]	A	G	1.323e^-4	0.959	SYNONYMOUS_CODING c12.2 DOWNSTREAM CG34449	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18420150	2R_18420150_SNP [dm3] 2R_22532645_SNP [dm6]	C	T	1.326e^-4	0.959	INTRON px	TF binding site mE1_TFBS_cad
3L	6288265	3L_6288265_SNP [dm3] 3L_6295165_SNP [dm6]	C	T	1.328e^-4	0.959	INTERGENIC
X	3003372	X_3003372_SNP [dm3] X_3109339_SNP [dm6]	A	G	1.334e^-4	0.959	INTRON kirre
X	13663385	X_13663385_SNP [dm3] X_13769352_SNP [dm6]	C	T	1.342e^-4	0.959	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_inv
2R	6795597	2R_6795597_SNP [dm3] 2R_10908092_SNP [dm6]	T	C	1.343e^-4	0.959	INTERGENIC
2R	6791197	2R_6791197_SNP [dm3] 2R_10903692_SNP [dm6]	A	T	1.350e^-4	0.959	NON_SYNONYMOUS_CODING CG12943
3L	8308604	3L_8308604_SNP [dm3] 3L_8315504_SNP [dm6]	A	G	1.356e^-4	0.959	UPSTREAM CG7185 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23957352	3R_23957352_SNP [dm3] 3R_28131630_SNP [dm6]	C	T	1.356e^-4	0.959	INTERGENIC
2L	11350556	2L_11350556_SNP [dm3] 2L_11350556_SNP [dm6]	A	G	1.365e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
X	17026191	X_17026191_DEL [dm3] X_17132158_DEL [dm6]	TT	T	1.367e^-4	0.959	INTRON CG5004
3R	22954881	3R_22954881_SNP [dm3] 3R_27129159_SNP [dm6]	C	T	1.368e^-4	0.959	INTRON CG6051
2R	17847050	2R_17847050_SNP [dm3] 2R_21959545_SNP [dm6]	C	T	1.374e^-4	0.959	INTERGENIC
2L	9008887	2L_9008887_SNP [dm3] 2L_9008887_SNP [dm6]	A	C	1.381e^-4	0.959	INTERGENIC
3L	8802742	3L_8802742_SNP [dm3] 3L_8809642_SNP [dm6]	A	C	1.383e^-4	0.959	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
X	20799882	X_20799882_SNP [dm3] X_20928855_SNP [dm6]	G	A	1.385e^-4	0.959	INTERGENIC
X	21307168	X_21307168_SNP [dm3] X_21436141_SNP [dm6]	T	G	1.390e^-4	0.959	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11841285	X_11841285_SNP [dm3] X_11947252_SNP [dm6]	G	A	1.391e^-4	0.959	INTRON cac
3L	8724199	3L_8724199_SNP [dm3] 3L_8731099_SNP [dm6]	C	G	1.393e^-4	0.959	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
2R	16347259	2R_16347259_SNP [dm3] 2R_20459754_SNP [dm6]	G	A	1.395e^-4	0.959	INTRON CG12484
X	2861813	X_2861813_SNP [dm3] X_2967780_SNP [dm6]	C	T	1.399e^-4	0.959	INTRON kirre & 1 other
2L	7264508	2L_7264508_SNP [dm3] 2L_7264508_SNP [dm6]	G	A	1.407e^-4	0.959	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	6563090	3L_6563090_SNP [dm3] 3L_6569990_SNP [dm6]	T	A	1.408e^-4	0.959	INTRON CG18769 & 1 other
2L	2258011	2L_2258011_SNP [dm3] 2L_2258011_SNP [dm6]	A	G	1.413e^-4	0.959	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8832719	3L_8832719_SNP [dm3] 3L_8839619_SNP [dm6]	C	T	1.423e^-4	0.959	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9252601	3R_9252601_SNP [dm3] 3R_13426879_SNP [dm6]	T	C	1.429e^-4	0.959	SYNONYMOUS_CODING Act87E UPSTREAM CR45591	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18420151	2R_18420151_SNP [dm3] 2R_22532646_SNP [dm6]	G	A	1.435e^-4	0.959	INTRON px	TF binding site mE1_TFBS_cad
X	19280226	X_19280226_SNP [dm3] X_19386193_SNP [dm6]	G	T	1.444e^-4	0.959	INTRON kek5
2L	9862355	2L_9862355_SNP [dm3] 2L_9862355_SNP [dm6]	T	C	1.445e^-4	0.959	INTRON nAChRalpha6
X	2815432	X_2815432_SNP [dm3] X_2921399_SNP [dm6]	T	C	1.461e^-4	0.959	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	10377189	3R_10377189_DEL [dm3] 3R_14551467_DEL [dm6]	TACACT	T	1.462e^-4	0.959	INTRON Pde6
2L	6166617	2L_6166617_SNP [dm3] 2L_6166617_SNP [dm6]	A	T	1.468e^-4	0.959	INTERGENIC
3R	23370638	3R_23370638_SNP [dm3] 3R_27544916_SNP [dm6]	T	C	1.485e^-4	0.959	SYNONYMOUS_CODING Gr98c
2R	9235551	2R_9235551_SNP [dm3] 2R_13348046_SNP [dm6]	A	C	1.487e^-4	0.959	INTRON CR44206
3R	23370617	3R_23370617_SNP [dm3] 3R_27544895_SNP [dm6]	T	C	1.491e^-4	0.959	SYNONYMOUS_CODING Gr98c
3R	25882406	3R_25882406_SNP [dm3] 3R_30056684_SNP [dm6]	T	A	1.492e^-4	0.959	UPSTREAM CG7950 & 2 others DOWNSTREAM CG15526 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25833992	3R_25833992_SNP [dm3] 3R_30008270_SNP [dm6]	C	T	1.492e^-4	0.959	INTRON Nlp & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16769377	2R_16769377_INS [dm3] 2R_20881872_INS [dm6]	A	AA	1.493e^-4	0.959	INTRON Cib2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6737374	2R_6737374_SNP [dm3] 2R_10849869_SNP [dm6]	C	T	1.493e^-4	0.959	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16939544	2R_16939544_SNP [dm3] 2R_21052039_SNP [dm6]	A	G	1.499e^-4	0.959	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6434109	X_6434109_SNP [dm3] X_6540076_SNP [dm6]	G	A	1.512e^-4	0.959	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4187929	2L_4187929_SNP [dm3] 2L_4187929_SNP [dm6]	C	T	1.520e^-4	0.959	UPSTREAM lectin-24Db & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9230080	X_9230080_SNP [dm3] X_9336047_SNP [dm6]	G	C	1.526e^-4	0.959	INTRON CG34449
X	14116537	X_14116537_SNP [dm3] X_14222504_SNP [dm6]	G	A	1.526e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
X	12798262	X_12798262_SNP [dm3] X_12904229_SNP [dm6]	T	C	1.541e^-4	0.959	UTR_3_PRIME CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo
2L	12248169	2L_12248169_SNP [dm3] 2L_12248169_SNP [dm6]	G	T	1.543e^-4	0.959	INTRON aret
2L	10633565	2L_10633565_SNP [dm3] 2L_10633565_SNP [dm6]	C	T	1.545e^-4	0.959	INTRON CG7329	TF binding site mE1_TFBS_inv
2L	10171108	2L_10171108_SNP [dm3] 2L_10171108_SNP [dm6]	C	A	1.545e^-4	0.959	INTRON CG44153
3L	10964287	3L_10964287_SNP [dm3] 3L_10971187_SNP [dm6]	C	T	1.546e^-4	0.959	INTERGENIC
3L	3015262	3L_3015262_SNP [dm3] 3L_3015262_SNP [dm6]	G	T	1.552e^-4	0.959	DOWNSTREAM CG32487 INTRON CG32488
3R	26962174	3R_26962174_SNP [dm3] 3R_31136452_SNP [dm6]	C	T	1.554e^-4	0.959	INTRON Gycbeta100B
X	3545356	X_3545356_SNP [dm3] X_3651323_SNP [dm6]	T	C	1.563e^-4	0.959	INTRON AstA-R1
3R	19466363	3R_19466363_DEL [dm3] 3R_23640641_DEL [dm6]	CA	T	1.585e^-4	0.959	INTRON CG31145
2L	10405375	2L_10405375_SNP [dm3] 2L_10405375_SNP [dm6]	A	G	1.590e^-4	0.959	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19886005	2R_19886005_SNP [dm3] 2R_23998482_SNP [dm6]	C	A	1.590e^-4	0.959	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2R	18003380	2R_18003380_SNP [dm3] 2R_22115875_SNP [dm6]	A	T	1.595e^-4	0.959	INTRON Vrp1 & 1 other
2R	18035714	2R_18035714_SNP [dm3] 2R_22148209_SNP [dm6]	A	T	1.597e^-4	0.959	INTRON a
2R	11732455	2R_11732455_SNP [dm3] 2R_15844950_SNP [dm6]	T	C	1.600e^-4	0.959	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA
2R	9156125	2R_9156125_SNP [dm3] 2R_13268620_SNP [dm6]	G	A	1.605e^-4	0.959	SYNONYMOUS_CODING Dh31-R UTR_3_PRIME Dh31-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3632829	2L_3632829_SNP [dm3] 2L_3632829_SNP [dm6]	A	G	1.608e^-4	0.959	UPSTREAM for INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	12089960	X_12089960_SNP [dm3] X_12195927_SNP [dm6]	C	G	1.613e^-4	0.959	NON_SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13227848	X_13227848_SNP [dm3] X_13333815_SNP [dm6]	C	T	1.618e^-4	0.959	INTERGENIC
2R	7818042	2R_7818042_SNP [dm3] 2R_11930537_SNP [dm6]	T	A	1.620e^-4	0.959	UPSTREAM CR44312 INTERGENIC
X	1665062	X_1665062_DEL [dm3] X_1771029_DEL [dm6]	CGCCCACTGCC...	C	1.622e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4585403	X_4585403_SNP [dm3] X_4691370_SNP [dm6]	T	C	1.626e^-4	0.959	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3254020	3L_3254020_SNP [dm3] 3L_3254020_SNP [dm6]	T	A	1.626e^-4	0.959	EXON CR43626
X	13229061	X_13229061_SNP [dm3] X_13335028_SNP [dm6]	G	C	1.628e^-4	0.959	DOWNSTREAM RpS15Aa INTERGENIC	insulator Insulator_Class_II.mE01 Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	18751919	2R_18751919_DEL [dm3] 2R_22864396_DEL [dm6]	AA	A	1.634e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	15556524	X_15556524_SNP [dm3] X_15662491_SNP [dm6]	A	G	1.639e^-4	0.959	UPSTREAM CG8119 DOWNSTREAM CR43299 EXON CR43299	TF binding site BDTNP1_TFBS_twi
2L	13684106	2L_13684106_SNP [dm3] 2L_13684106_SNP [dm6]	T	G	1.645e^-4	0.959	INTRON CG31814
2L	5302979	2L_5302979_SNP [dm3] 2L_5302979_SNP [dm6]	A	G	1.652e^-4	0.959	INTRON vri
3L	980707	3L_980707_SNP [dm3] 3L_980707_SNP [dm6]	G	A	1.654e^-4	0.959	DOWNSTREAM Glut1 INTRON Glut1
3L	14599202	3L_14599202_SNP [dm3] 3L_14606102_SNP [dm6]	T	A	1.655e^-4	0.959	INTERGENIC
2R	16658437	2R_16658437_SNP [dm3] 2R_20770932_SNP [dm6]	C	T	1.662e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4023012	2L_4023012_SNP [dm3] 2L_4023012_SNP [dm6]	A	T	1.670e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1026401	3L_1026401_SNP [dm3] 3L_1026401_SNP [dm6]	G	A	1.673e^-4	0.959	SPLICE_SITE_REGION trio INTRON trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3800060	X_3800060_SNP [dm3] X_3906027_SNP [dm6]	A	T	1.673e^-4	0.959	INTRON CG42541	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16448819	2L_16448819_SNP [dm3] 2L_16448819_SNP [dm6]	T	A	1.674e^-4	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
3L	13833788	3L_13833788_SNP [dm3] 3L_13840688_SNP [dm6]	T	G	1.680e^-4	0.959	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18845268	3L_18845268_SNP [dm3] 3L_18852168_SNP [dm6]	T	C	1.682e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2673559	3L_2673559_SNP [dm3] 3L_2673559_SNP [dm6]	C	T	1.689e^-4	0.959	INTRON Fife
3L	979719	3L_979719_SNP [dm3] 3L_979719_SNP [dm6]	T	C	1.696e^-4	0.959	INTRON Glut1
3L	6291100	3L_6291100_SNP [dm3] 3L_6298000_SNP [dm6]	G	A	1.696e^-4	0.959	INTERGENIC
2L	12768125	2L_12768125_SNP [dm3] 2L_12768125_SNP [dm6]	A	G	1.710e^-4	0.959	INTERGENIC
3L	1976680	3L_1976680_SNP [dm3] 3L_1976680_SNP [dm6]	T	C	1.711e^-4	0.959	INTERGENIC
3L	6160501	3L_6160501_SNP [dm3] 3L_6167401_SNP [dm6]	C	G	1.712e^-4	0.959	UTR_3_PRIME CG10289
2L	1194124	2L_1194124_SNP [dm3] 2L_1194124_SNP [dm6]	A	C	1.715e^-4	0.959	INTRON CG5001
2R	9403496	2R_9403496_SNP [dm3] 2R_13515991_SNP [dm6]	G	T	1.720e^-4	0.959	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2071955	2L_2071955_SNP [dm3] 2L_2071955_SNP [dm6]	A	G	1.731e^-4	0.959	INTRON dpr3
X	9217921	X_9217921_SNP [dm3] X_9323888_SNP [dm6]	T	C	1.731e^-4	0.959	SYNONYMOUS_CODING c12.2 DOWNSTREAM CG34449	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1648239	2L_1648239_SNP [dm3] 2L_1648239_SNP [dm6]	C	T	1.734e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11340277	3L_11340277_SNP [dm3] 3L_11347177_SNP [dm6]	T	G	1.735e^-4	0.959	INTERGENIC
3L	11548627	3L_11548627_SNP [dm3] 3L_11555527_SNP [dm6]	A	T	1.736e^-4	0.959	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21286883	2L_21286883_SNP [dm3] 2L_21286883_SNP [dm6]	T	C	1.743e^-4	0.959	INTRON Mio
3L	1439392	3L_1439392_SNP [dm3] 3L_1439392_SNP [dm6]	T	C	1.746e^-4	0.959	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
3L	10832397	3L_10832397_SNP [dm3] 3L_10839297_SNP [dm6]	T	A	1.762e^-4	0.959	INTERGENIC
2L	8700235	2L_8700235_SNP [dm3] 2L_8700235_SNP [dm6]	G	A	1.762e^-4	0.959	UPSTREAM Hnf4 INTRON Hnf4
3R	3363883	3R_3363883_SNP [dm3] 3R_7538161_SNP [dm6]	C	A	1.764e^-4	0.959	DOWNSTREAM alpha-Est3 INTRON alpha-Est4
X	3545300	X_3545300_SNP [dm3] X_3651267_SNP [dm6]	A	T	1.768e^-4	0.959	INTRON AstA-R1
2R	10556775	2R_10556775_SNP [dm3] 2R_14669270_SNP [dm6]	T	C	1.771e^-4	0.959	NON_SYNONYMOUS_CODING CG12866 SPLICE_SITE_REGION CG12866	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	3544854	X_3544854_SNP [dm3] X_3650821_SNP [dm6]	C	T	1.780e^-4	0.959	INTRON AstA-R1
3L	11295686	3L_11295686_SNP [dm3] 3L_11302586_SNP [dm6]	T	A	1.780e^-4	0.959	INTERGENIC
2L	16056465	2L_16056465_SNP [dm3] 2L_16056465_SNP [dm6]	A	T	1.781e^-4	0.959	INTRON beat-Ia
2L	2072164	2L_2072164_SNP [dm3] 2L_2072164_SNP [dm6]	G	A	1.782e^-4	0.959	INTRON dpr3
3L	14553447	3L_14553447_SNP [dm3] 3L_14560347_SNP [dm6]	G	A	1.787e^-4	0.959	SYNONYMOUS_CODING Lk INTRON CG34039 EXON CR44843	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	2257730	X_2257730_SNP [dm3] X_2363697_SNP [dm6]	A	G	1.788e^-4	0.959	INTRON ptr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11340293	3L_11340293_SNP [dm3] 3L_11347193_SNP [dm6]	T	A	1.791e^-4	0.959	INTERGENIC
X	5326112	X_5326112_SNP [dm3] X_5432079_SNP [dm6]	C	T	1.792e^-4	0.959	NON_SYNONYMOUS_CODING CG15784	TF binding site mE1_TFBS_chinmo
X	5326116	X_5326116_SNP [dm3] X_5432083_SNP [dm6]	T	C	1.792e^-4	0.959	SYNONYMOUS_CODING CG15784	TF binding site mE1_TFBS_chinmo
2L	5888455	2L_5888455_SNP [dm3] 2L_5888455_SNP [dm6]	G	C	1.794e^-4	0.959	UPSTREAM CR44577 EXON CR44578
X	6434120	X_6434120_SNP [dm3] X_6540087_SNP [dm6]	A	G	1.796e^-4	0.959	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2852961	3L_2852961_SNP [dm3] 3L_2852961_SNP [dm6]	C	A	1.796e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1337143	3L_1337143_SNP [dm3] 3L_1337143_SNP [dm6]	A	C	1.798e^-4	0.959	INTRON l_3_02640	TF binding site BDTNP1_TFBS_dl
3L	1332703	3L_1332703_SNP [dm3] 3L_1332703_SNP [dm6]	G	A	1.804e^-4	0.959	SYNONYMOUS_CODING msd5 DOWNSTREAM CG2211 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20210379	3R_20210379_SNP [dm3] 3R_24384657_SNP [dm6]	G	A	1.805e^-4	0.959	SYNONYMOUS_CODING CG17780
3R	1268770	3R_1268770_SNP [dm3] 3R_5443048_SNP [dm6]	A	G	1.807e^-4	0.959	DOWNSTREAM CG14669 INTRON CG14669
2R	18620183	2R_18620183_SNP [dm3] 2R_22732678_SNP [dm6]	A	T	1.809e^-4	0.959	NON_SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad
X	10199073	X_10199073_SNP [dm3] X_10305040_SNP [dm6]	A	G	1.816e^-4	0.959	INTRON alpha-Man-I
3L	6799228	3L_6799228_DEL [dm3] 3L_6806128_DEL [dm6]	TT	T	1.833e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
3L	1326230	3L_1326230_SNP [dm3] 3L_1326230_SNP [dm6]	G	T	1.837e^-4	0.959	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18620679	2R_18620679_SNP [dm3] 2R_22733174_SNP [dm6]	G	T	1.842e^-4	0.959	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1321496	3L_1321496_SNP [dm3] 3L_1321496_SNP [dm6]	T	C	1.846e^-4	0.959	DOWNSTREAM CG9184 INTRON Myo61F
3L	6291097	3L_6291097_SNP [dm3] 3L_6297997_SNP [dm6]	G	T	1.853e^-4	0.959	INTERGENIC
3R	22938168	3R_22938168_SNP [dm3] 3R_27112446_SNP [dm6]	A	T	1.857e^-4	0.959	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	22938160	3R_22938160_SNP [dm3] 3R_27112438_SNP [dm6]	C	G	1.863e^-4	0.959	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	10405140	2L_10405140_SNP [dm3] 2L_10405140_SNP [dm6]	G	T	1.882e^-4	0.959	UTR_5_PRIME CG17768 & 1 other UPSTREAM Ir31a	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12459765	2R_12459765_SNP [dm3] 2R_16572260_SNP [dm6]	G	A	1.886e^-4	0.959	SYNONYMOUS_CODING CG4927	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
3L	14582094	3L_14582094_SNP [dm3] 3L_14588994_SNP [dm6]	A	C	1.886e^-4	0.959	INTRON HGTX
3L	10832430	3L_10832430_SNP [dm3] 3L_10839330_SNP [dm6]	A	T	1.888e^-4	0.959	INTERGENIC
2R	9904512	2R_9904512_SNP [dm3] 2R_14017007_SNP [dm6]	T	A	1.900e^-4	0.959	INTRON mam
3R	23370683	3R_23370683_SNP [dm3] 3R_27544961_SNP [dm6]	T	C	1.906e^-4	0.959	SYNONYMOUS_CODING Gr98c
2R	7134563	2R_7134563_INS [dm3] 2R_11247058_INS [dm6]	T	TGTTGTTTTTGT...	1.932e^-4	0.959	DOWNSTREAM CR30029 INTERGENIC
2L	7145129	2L_7145129_SNP [dm3] 2L_7145129_SNP [dm6]	A	T	1.947e^-4	0.959	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17872240	2L_17872240_SNP [dm3] 2L_17872240_SNP [dm6]	A	C	1.947e^-4	0.959	INTRON CadN2
2L	9337587	2L_9337587_SNP [dm3] 2L_9337587_SNP [dm6]	C	A	1.949e^-4	0.959	UPSTREAM Eaat1 INTRON Eaat1
2L	8369151	2L_8369151_SNP [dm3] 2L_8369151_SNP [dm6]	C	T	1.956e^-4	0.959	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	10810013	2L_10810013_SNP [dm3] 2L_10810013_SNP [dm6]	G	A	1.956e^-4	0.959	INTRON Nos
2L	15027884	2L_15027884_SNP [dm3] 2L_15027884_SNP [dm6]	A	G	1.961e^-4	0.959	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
X	3545290	X_3545290_SNP [dm3] X_3651257_SNP [dm6]	T	C	1.964e^-4	0.959	INTRON AstA-R1
2R	17744608	2R_17744608_SNP [dm3] 2R_21857103_SNP [dm6]	C	T	1.967e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5303011	2L_5303011_SNP [dm3] 2L_5303011_SNP [dm6]	G	A	1.973e^-4	0.959	INTRON vri
2L	1177011	2L_1177011_SNP [dm3] 2L_1177011_SNP [dm6]	C	T	1.998e^-4	0.959	SYNONYMOUS_CODING CG4887 UPSTREAM CG4896	TF binding site mE1_TFBS_sens
3R	22133524	3R_22133524_SNP [dm3] 3R_26307802_SNP [dm6]	C	T	2.005e^-4	0.959	INTERGENIC
3R	13478236	3R_13478236_SNP [dm3] 3R_17652514_SNP [dm6]	G	C	2.020e^-4	0.959	INTRON CG14322 EXON CR45223
3L	19195281	3L_19195281_SNP [dm3] 3L_19202181_SNP [dm6]	A	G	2.021e^-4	0.959	INTRON fz2
2L	1188975	2L_1188975_SNP [dm3] 2L_1188975_SNP [dm6]	A	T	2.022e^-4	0.959	INTRON CG5001
3L	19324273	3L_19324273_SNP [dm3] 3L_19331173_SNP [dm6]	G	T	2.028e^-4	0.959	INTRON pip	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4187973	2L_4187973_SNP [dm3] 2L_4187973_SNP [dm6]	C	A	2.049e^-4	0.959	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6792879	3L_6792879_SNP [dm3] 3L_6799779_SNP [dm6]	G	A	2.052e^-4	0.959	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	5337233	2R_5337233_SNP [dm3] 2R_9449728_SNP [dm6]	G	T	2.055e^-4	0.959	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2852983	3L_2852983_SNP [dm3] 3L_2852983_SNP [dm6]	A	G	2.064e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2852986	3L_2852986_SNP [dm3] 3L_2852986_SNP [dm6]	A	C	2.064e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18620251	2R_18620251_SNP [dm3] 2R_22732746_SNP [dm6]	T	A	2.067e^-4	0.959	INTRON jbug	TF binding site mE1_TFBS_cad
2R	7208875	2R_7208875_SNP [dm3] 2R_11321370_SNP [dm6]	G	A	2.070e^-4	0.959	UPSTREAM Or47b INTERGENIC	regulatory region REDfly_CRMs
2L	15468990	2L_15468990_SNP [dm3] 2L_15468990_SNP [dm6]	G	A	2.071e^-4	0.959	EXON CR45353
2R	7134566	2R_7134566_DEL [dm3] 2R_11247061_DEL [dm6]	AGATTCTAGAT...	A	2.075e^-4	0.959	DOWNSTREAM CR30029 INTERGENIC
2L	5463698	2L_5463698_SNP [dm3] 2L_5463698_SNP [dm6]	G	T	2.077e^-4	0.959	INTRON mid
2L	3027804	2L_3027804_SNP [dm3] 2L_3027804_SNP [dm6]	C	T	2.090e^-4	0.959	SYNONYMOUS_CODING CG3605	TF binding site mE1_TFBS_sens
2L	19785340	2L_19785340_SNP [dm3] 2L_19785340_SNP [dm6]	C	T	2.093e^-4	0.959	INTRON CdGAPr
3R	3364515	3R_3364515_SNP [dm3] 3R_7538793_SNP [dm6]	A	C	2.096e^-4	0.959	UPSTREAM alpha-Est4 DOWNSTREAM alpha-Est3 INTERGENIC
3L	9276637	3L_9276637_SNP [dm3] 3L_9283537_SNP [dm6]	C	T	2.106e^-4	0.959	INTRON GluRIB
2L	1191944	2L_1191944_SNP [dm3] 2L_1191944_SNP [dm6]	G	A	2.128e^-4	0.959	INTRON CG5001	TF binding site mE1_TFBS_cad
3L	5904847	3L_5904847_DEL [dm3] 3L_5911747_DEL [dm6]	GCGTT	G	2.142e^-4	0.959	INTRON CG13288
3L	14615435	3L_14615435_INS [dm3] 3L_14622335_INS [dm6]	T	TCGTT	2.148e^-4	0.959	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
2L	11326619	2L_11326619_INS [dm3] 2L_11326619_INS [dm6]	A	ACG	2.155e^-4	0.959	INTERGENIC
3R	16023330	3R_16023330_SNP [dm3] 3R_20197608_SNP [dm6]	C	T	2.161e^-4	0.959	INTERGENIC
X	19737185	X_19737185_SNP [dm3] X_19843152_SNP [dm6]	C	A	2.163e^-4	0.959	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11340270	3L_11340270_SNP [dm3] 3L_11347170_SNP [dm6]	G	A	2.169e^-4	0.959	INTERGENIC
2R	6374920	2R_6374920_SNP [dm3] 2R_10487415_SNP [dm6]	A	G	2.172e^-4	0.959	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10832384	3L_10832384_SNP [dm3] 3L_10839284_SNP [dm6]	A	C	2.176e^-4	0.959	INTERGENIC
2R	17344114	2R_17344114_SNP [dm3] 2R_21456609_SNP [dm6]	A	T	2.180e^-4	0.959	INTRON Sdc
2L	15546729	2L_15546729_SNP [dm3] 2L_15546729_SNP [dm6]	G	A	2.184e^-4	0.959	UPSTREAM Skadu INTERGENIC
2L	3987696	2L_3987696_DEL [dm3] 2L_3987696_DEL [dm6]	AA	A	2.186e^-4	0.959	INTRON fred
2L	3987705	2L_3987705_SNP [dm3] 2L_3987705_SNP [dm6]	G	T	2.197e^-4	0.959	INTRON fred
3L	11340264	3L_11340264_SNP [dm3] 3L_11347164_SNP [dm6]	G	A	2.201e^-4	0.959	INTERGENIC
X	19080484	X_19080484_SNP [dm3] X_19186451_SNP [dm6]	A	T	2.206e^-4	0.959	SPLICE_SITE_REGION CG33253 INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2445223	3L_2445223_SNP [dm3] 3L_2445223_SNP [dm6]	T	C	2.210e^-4	0.959	SYNONYMOUS_CODING CG45186	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4329641	2L_4329641_SNP [dm3] 2L_4329641_SNP [dm6]	C	T	2.214e^-4	0.959	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo
2L	3987706	2L_3987706_SNP [dm3] 2L_3987706_SNP [dm6]	T	G	2.228e^-4	0.959	INTRON fred
2L	9438038	2L_9438038_SNP [dm3] 2L_9438038_SNP [dm6]	G	T	2.238e^-4	0.959	DOWNSTREAM RpS28-like INTRON numb	TF binding site BDTNP1_TFBS_dl
2R	7064971	2R_7064971_SNP [dm3] 2R_11177466_SNP [dm6]	C	T	2.250e^-4	0.959	INTRON shn
3R	19144640	3R_19144640_SNP [dm3] 3R_23318918_SNP [dm6]	A	G	2.255e^-4	0.959	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19604938	2R_19604938_SNP [dm3] 2R_23717415_SNP [dm6]	T	G	2.255e^-4	0.959	INTRON Sesn	TF binding site mE1_TFBS_chinmo
X	3545208	X_3545208_SNP [dm3] X_3651175_SNP [dm6]	A	G	2.257e^-4	0.959	INTRON AstA-R1
2R	19215171	2R_19215171_INS [dm3] 2R_23327648_INS [dm6]	T	TAT	2.266e^-4	0.959	UPSTREAM CG30417 DOWNSTREAM CG9861 INTERGENIC
3L	8802505	3L_8802505_SNP [dm3] 3L_8809405_SNP [dm6]	C	G	2.269e^-4	0.959	UPSTREAM CG13309 DOWNSTREAM CG32024 & 1 other INTERGENIC
2L	8376916	2L_8376916_SNP [dm3] 2L_8376916_SNP [dm6]	G	A	2.272e^-4	0.959	UPSTREAM CG17294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13141430	2L_13141430_SNP [dm3] 2L_13141430_SNP [dm6]	A	T	2.276e^-4	0.959	INTERGENIC
2L	5303012	2L_5303012_SNP [dm3] 2L_5303012_SNP [dm6]	A	C	2.277e^-4	0.959	INTRON vri
2L	5303058	2L_5303058_SNP [dm3] 2L_5303058_SNP [dm6]	A	T	2.277e^-4	0.959	INTRON vri
2R	10816187	2R_10816187_SNP [dm3] 2R_14928682_SNP [dm6]	C	T	2.279e^-4	0.959	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	13114022	3L_13114022_SNP [dm3] 3L_13120922_SNP [dm6]	A	C	2.285e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	14116577	X_14116577_SNP [dm3] X_14222544_SNP [dm6]	A	G	2.301e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3L	10456560	3L_10456560_SNP [dm3] 3L_10463460_SNP [dm6]	A	G	2.302e^-4	0.959	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16134571	2R_16134571_SNP [dm3] 2R_20247066_SNP [dm6]	G	A	2.310e^-4	0.959	SPLICE_SITE_REGION ppk6 INTRON ppk6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6291073	3L_6291073_SNP [dm3] 3L_6297973_SNP [dm6]	A	G	2.312e^-4	0.959	INTERGENIC
2L	2838642	2L_2838642_SNP [dm3] 2L_2838642_SNP [dm6]	G	C	2.322e^-4	0.959	NON_SYNONYMOUS_CODING Cpr23B UPSTREAM CG3119	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9202099	X_9202099_SNP [dm3] X_9308066_SNP [dm6]	C	G	2.338e^-4	0.959	INTERGENIC
2R	15302526	2R_15302526_SNP [dm3] 2R_19415021_SNP [dm6]	A	C	2.354e^-4	0.959	UPSTREAM tRNA:CR30326 & 1 other DOWNSTREAM tRNA:S4:56D & 1 other INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4809610	3L_4809610_SNP [dm3] 3L_4809610_SNP [dm6]	A	G	2.361e^-4	0.959	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14314987	2R_14314987_SNP [dm3] 2R_18427482_SNP [dm6]	A	G	2.368e^-4	0.959	SYNONYMOUS_CODING CG12263	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	7840988	2L_7840988_SNP [dm3] 2L_7840988_SNP [dm6]	A	G	2.375e^-4	0.959	SYNONYMOUS_CODING CG14537 UPSTREAM CR43100	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20928504	3L_20928504_SNP [dm3] 3L_20935404_SNP [dm6]	T	C	2.381e^-4	0.959	INTRON fng
2R	17241243	2R_17241243_SNP [dm3] 2R_21353738_SNP [dm6]	G	A	2.393e^-4	0.959	INTERGENIC
2R	10606589	2R_10606589_SNP [dm3] 2R_14719084_SNP [dm6]	A	C	2.422e^-4	0.959	INTERGENIC
2L	3935215	2L_3935215_SNP [dm3] 2L_3935215_SNP [dm6]	T	A	2.438e^-4	0.959	INTRON fred
3L	11340250	3L_11340250_SNP [dm3] 3L_11347150_SNP [dm6]	A	G	2.441e^-4	0.959	INTERGENIC
3R	19137326	3R_19137326_SNP [dm3] 3R_23311604_SNP [dm6]	C	A	2.459e^-4	0.959	INTRON pnt
3L	8806790	3L_8806790_SNP [dm3] 3L_8813690_SNP [dm6]	A	T	2.461e^-4	0.959	INTERGENIC
3L	7206546	3L_7206546_SNP [dm3] 3L_7213446_SNP [dm6]	A	G	2.464e^-4	0.959	INTERGENIC
2L	7988373	2L_7988373_SNP [dm3] 2L_7988373_SNP [dm6]	G	A	2.484e^-4	0.959	INTRON pes	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14615386	3L_14615386_SNP [dm3] 3L_14622286_SNP [dm6]	A	T	2.492e^-4	0.959	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
3L	10992638	3L_10992638_SNP [dm3] 3L_10999538_SNP [dm6]	G	A	2.492e^-4	0.959	INTRON klu
3L	18908840	3L_18908840_SNP [dm3] 3L_18915740_SNP [dm6]	T	C	2.494e^-4	0.959	INTERGENIC
2R	6737272	2R_6737272_SNP [dm3] 2R_10849767_SNP [dm6]	C	T	2.495e^-4	0.959	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12638504	3L_12638504_SNP [dm3] 3L_12645404_SNP [dm6]	G	T	2.507e^-4	0.959	EXON CR32111
X	4625568	X_4625568_SNP [dm3] X_4731535_SNP [dm6]	T	A	2.508e^-4	0.959	INTERGENIC
3L	11809246	3L_11809246_SNP [dm3] 3L_11816146_SNP [dm6]	A	G	2.514e^-4	0.959	SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_sens
2L	7988410	2L_7988410_SNP [dm3] 2L_7988410_SNP [dm6]	C	T	2.521e^-4	0.959	SYNONYMOUS_CODING pes	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8610537	2L_8610537_SNP [dm3] 2L_8610537_SNP [dm6]	C	T	2.525e^-4	0.959	INTRON Sema-1a
2L	15248709	2L_15248709_SNP [dm3] 2L_15248709_SNP [dm6]	T	C	2.530e^-4	0.959	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	16132908	2R_16132908_SNP [dm3] 2R_20245403_SNP [dm6]	A	T	2.535e^-4	0.959	UPSTREAM CG11208 DOWNSTREAM ppk6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17793330	3R_17793330_SNP [dm3] 3R_21967608_SNP [dm6]	T	C	2.541e^-4	0.959	INTRON Eip93F
X	19280189	X_19280189_SNP [dm3] X_19386156_SNP [dm6]	T	C	2.544e^-4	0.959	INTRON kek5
3R	13459347	3R_13459347_SNP [dm3] 3R_17633625_SNP [dm6]	G	A	2.568e^-4	0.959	INTRON CG43175
3L	3695622	3L_3695622_DEL [dm3] 3L_3695622_DEL [dm6]	TT	T	2.579e^-4	0.959	INTERGENIC
2L	3200108	2L_3200108_SNP [dm3] 2L_3200108_SNP [dm6]	C	T	2.581e^-4	0.959	UPSTREAM CG34393 INTRON CG34393
2R	10198610	2R_10198610_INS [dm3] 2R_14311105_INS [dm6]	T	TAT	2.584e^-4	0.959	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	8216267	X_8216267_DEL [dm3] X_8322234_DEL [dm6]	CCA	C	2.588e^-4	0.959	INTRON nAChRalpha3
3L	2673334	3L_2673334_SNP [dm3] 3L_2673334_SNP [dm6]	A	T	2.590e^-4	0.959	INTRON Fife
3L	6688068	3L_6688068_SNP [dm3] 3L_6694968_SNP [dm6]	A	T	2.590e^-4	0.959	INTRON SP1173
X	14116619	X_14116619_SNP [dm3] X_14222586_SNP [dm6]	A	G	2.590e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3L	19208165	3L_19208165_SNP [dm3] 3L_19215065_SNP [dm6]	T	C	2.591e^-4	0.959	INTRON fz2
2L	20418765	2L_20418765_SNP [dm3] 2L_20418765_SNP [dm6]	C	A	2.594e^-4	0.959	UPSTREAM snoRNA:Psi18S-525c & 5 others DOWNSTREAM snoRNA:Psi18S-525a & 1 other INTRON Arpc2 EXON snoRNA:Psi18S-525b	TF binding site mE1_TFBS_zfh1
2R	19604749	2R_19604749_SNP [dm3] 2R_23717226_SNP [dm6]	T	G	2.599e^-4	0.959	INTRON Sesn
2L	3986202	2L_3986202_SNP [dm3] 2L_3986202_SNP [dm6]	C	T	2.601e^-4	0.959	INTRON fred
2R	16413498	2R_16413498_SNP [dm3] 2R_20525993_SNP [dm6]	C	T	2.602e^-4	0.959	UPSTREAM CG13422 DOWNSTREAM CR44650 INTERGENIC
3R	6541715	3R_6541715_SNP [dm3] 3R_10715993_SNP [dm6]	A	G	2.620e^-4	0.959	DOWNSTREAM CG4073 INTERGENIC
X	9827030	X_9827030_SNP [dm3] X_9932997_SNP [dm6]	G	T	2.628e^-4	0.959	INTERGENIC
3L	815777	3L_815777_SNP [dm3] 3L_815777_SNP [dm6]	C	A	2.630e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11912293	2L_11912293_SNP [dm3] 2L_11912293_SNP [dm6]	A	C	2.643e^-4	0.959	INTRON Pde1c
3R	19324063	3R_19324063_SNP [dm3] 3R_23498341_SNP [dm6]	A	T	2.650e^-4	0.959	INTERGENIC
2L	12242008	2L_12242008_SNP [dm3] 2L_12242008_SNP [dm6]	G	A	2.658e^-4	0.959	INTRON aret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6416472	2L_6416472_SNP [dm3] 2L_6416472_SNP [dm6]	C	T	2.665e^-4	0.959	SYNONYMOUS_CODING Tig	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	14116466	X_14116466_INS [dm3] X_14222433_INS [dm6]	T	TC	2.665e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	26039585	3R_26039585_SNP [dm3] 3R_30213863_SNP [dm6]	A	G	2.670e^-4	0.959	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
2R	18241614	2R_18241614_SNP [dm3] 2R_22354109_SNP [dm6]	C	T	2.670e^-4	0.959	INTRON Liprin-gamma
3R	7610011	3R_7610011_SNP [dm3] 3R_11784289_SNP [dm6]	T	C	2.671e^-4	0.959	SYNONYMOUS_CODING CG17360
3R	23541461	3R_23541461_SNP [dm3] 3R_27715739_SNP [dm6]	C	T	2.678e^-4	0.959	INTERGENIC
3L	4313089	3L_4313089_SNP [dm3] 3L_4313089_SNP [dm6]	G	C	2.678e^-4	0.959	UPSTREAM Claspin INTERGENIC
3L	8386522	3L_8386522_SNP [dm3] 3L_8393422_SNP [dm6]	C	G	2.681e^-4	0.959	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	2874840	2R_2874840_SNP [dm3] 2R_6987335_SNP [dm6]	G	T	2.681e^-4	0.959	INTRON CG17002	TF binding site mE1_TFBS_cad
2L	5562865	2L_5562865_SNP [dm3] 2L_5562865_SNP [dm6]	C	T	2.686e^-4	0.959	INTRON GluRIIB	TF binding site mE1_TFBS_cad
3L	424116	3L_424116_SNP [dm3] 3L_424116_SNP [dm6]	A	G	2.686e^-4	0.959	INTERGENIC
2R	7636119	2R_7636119_INS [dm3] 2R_11748614_INS [dm6]	T	TTT	2.693e^-4	0.959	INTERGENIC
2L	638419	2L_638419_SNP [dm3] 2L_638419_SNP [dm6]	G	C	2.700e^-4	0.959	INTERGENIC
2R	12873632	2R_12873632_SNP [dm3] 2R_16986127_SNP [dm6]	A	G	2.701e^-4	0.959	SYNONYMOUS_CODING Cbp53E
3R	19946568	3R_19946568_SNP [dm3] 3R_24120846_SNP [dm6]	C	T	2.701e^-4	0.959	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
3L	1084602	3L_1084602_DEL [dm3] 3L_1084602_DEL [dm6]	GCCCAATA	G	2.702e^-4	0.959	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6799523	2R_6799523_SNP [dm3] 2R_10912018_SNP [dm6]	T	C	2.723e^-4	0.959	INTERGENIC
2R	6797434	2R_6797434_SNP [dm3] 2R_10909929_SNP [dm6]	C	A	2.727e^-4	0.959	SYNONYMOUS_CODING Obp47a
2L	10810405	2L_10810405_SNP [dm3] 2L_10810405_SNP [dm6]	A	T	2.741e^-4	0.959	INTRON Nos
2R	10738805	2R_10738805_SNP [dm3] 2R_14851300_SNP [dm6]	C	T	2.744e^-4	0.959	SYNONYMOUS_CODING SMC2	TF binding site mE1_TFBS_sens
3R	9476357	3R_9476357_SNP [dm3] 3R_13650635_SNP [dm6]	T	G	2.745e^-4	0.959	INTRON rin
X	4585372	X_4585372_SNP [dm3] X_4691339_SNP [dm6]	C	G	2.746e^-4	0.959	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11938217	X_11938217_SNP [dm3] X_12044184_SNP [dm6]	C	G	2.751e^-4	0.959	UTR_5_PRIME Ten-a EXON CR43960
3R	22398616	3R_22398616_SNP [dm3] 3R_26572894_SNP [dm6]	C	T	2.751e^-4	0.959	INTRON scrib
3L	5907046	3L_5907046_SNP [dm3] 3L_5913946_SNP [dm6]	G	A	2.755e^-4	0.959	INTRON CG13288
X	5904222	X_5904222_INS [dm3] X_6010189_INS [dm6]	A	AC	2.761e^-4	0.959	INTRON mab-21
X	13933862	X_13933862_SNP [dm3] X_14039829_SNP [dm6]	A	G	2.764e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19466319	3R_19466319_SNP [dm3] 3R_23640597_SNP [dm6]	C	A	2.771e^-4	0.959	INTRON CG31145
2L	1735953	2L_1735953_SNP [dm3] 2L_1735953_SNP [dm6]	T	C	2.772e^-4	0.959	INTRON CG17646
2L	8181871	2L_8181871_SNP [dm3] 2L_8181871_SNP [dm6]	T	C	2.774e^-4	0.959	DOWNSTREAM Piezo INTRON Piezo
3R	27130552	3R_27130552_SNP [dm3] 3R_31304830_SNP [dm6]	G	T	2.783e^-4	0.959	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14187290	3R_14187290_DEL [dm3] 3R_18361568_DEL [dm6]	TTTTCCATAATTAACGCAA...	T	2.790e^-4	0.959	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	2.793e^-4	0.959	INTERGENIC
3L	12381199	3L_12381199_SNP [dm3] 3L_12388099_SNP [dm6]	C	A	2.795e^-4	0.959	UPSTREAM Ncc69 INTRON Ncc69
X	19786560	X_19786560_SNP [dm3] X_19892527_SNP [dm6]	A	T	2.798e^-4	0.959	INTRON Hers
2R	12474924	2R_12474924_SNP [dm3] 2R_16587419_SNP [dm6]	T	C	2.813e^-4	0.959	NON_SYNONYMOUS_CODING CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5812028	2L_5812028_DEL [dm3] 2L_5812028_DEL [dm6]	AGCAAA	A	2.828e^-4	0.959	DOWNSTREAM CG43307 INTERGENIC
3L	11893869	3L_11893869_SNP [dm3] 3L_11900769_SNP [dm6]	G	A	2.834e^-4	0.959	DOWNSTREAM CR43624 INTRON CG44837
3R	26961903	3R_26961903_SNP [dm3] 3R_31136181_SNP [dm6]	T	A	2.837e^-4	0.959	INTRON Gycbeta100B
2L	1482276	2L_1482276_SNP [dm3] 2L_1482276_SNP [dm6]	T	C	2.837e^-4	0.959	INTERGENIC
2R	16611058	2R_16611058_SNP [dm3] 2R_20723553_SNP [dm6]	T	C	2.845e^-4	0.959	DOWNSTREAM CR44660 INTRON dpr
X	19879392	X_19879392_SNP [dm3] X_19985359_SNP [dm6]	A	T	2.846e^-4	0.959	INTERGENIC
2R	20550665	2R_20550665_SNP [dm3] 2R_24663142_SNP [dm6]	G	A	2.852e^-4	0.959	SYNONYMOUS_CODING Cpr60D DOWNSTREAM CG3663 & 1 other	TF binding site mE1_TFBS_sens
3R	10199033	3R_10199033_SNP [dm3] 3R_14373311_SNP [dm6]	G	A	2.858e^-4	0.959	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9476325	3R_9476325_SNP [dm3] 3R_13650603_SNP [dm6]	G	A	2.858e^-4	0.959	INTRON rin	TF binding site mE1_TFBS_cad
2L	10171337	2L_10171337_DEL [dm3] 2L_10171337_DEL [dm6]	TA	G	2.861e^-4	0.959	INTRON CG44153
2L	636745	2L_636745_SNP [dm3] 2L_636745_SNP [dm6]	A	C	2.864e^-4	0.959	INTERGENIC
3R	9476484	3R_9476484_SNP [dm3] 3R_13650762_SNP [dm6]	C	T	2.871e^-4	0.959	INTRON rin
2R	19215190	2R_19215190_SNP [dm3] 2R_23327667_SNP [dm6]	G	A	2.872e^-4	0.959	UPSTREAM CG30417 DOWNSTREAM CG9861 INTERGENIC
2R	16133060	2R_16133060_SNP [dm3] 2R_20245555_SNP [dm6]	C	T	2.875e^-4	0.959	UPSTREAM CG11208 DOWNSTREAM ppk6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15749391	2R_15749391_SNP [dm3] 2R_19861886_SNP [dm6]	T	A	2.880e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_sens
X	14394873	X_14394873_SNP [dm3] X_14500840_SNP [dm6]	A	C	2.888e^-4	0.959	INTERGENIC
3R	7606688	3R_7606688_SNP [dm3] 3R_11780966_SNP [dm6]	C	T	2.888e^-4	0.959	DOWNSTREAM CG17360 EXON CR45595	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl
3L	1308390	3L_1308390_SNP [dm3] 3L_1308390_SNP [dm6]	T	C	2.893e^-4	0.959	SYNONYMOUS_CODING CG2469 UPSTREAM CG2277	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9392541	3L_9392541_SNP [dm3] 3L_9399441_SNP [dm6]	G	A	2.900e^-4	0.959	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9262147	2R_9262147_SNP [dm3] 2R_13374642_SNP [dm6]	G	A	2.904e^-4	0.959	INTERGENIC
3L	3695625	3L_3695625_SNP [dm3] 3L_3695625_SNP [dm6]	T	G	2.911e^-4	0.959	INTERGENIC
X	14116554	X_14116554_SNP [dm3] X_14222521_SNP [dm6]	G	C	2.916e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3L	11548657	3L_11548657_SNP [dm3] 3L_11555557_SNP [dm6]	G	A	2.927e^-4	0.959	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3932882	X_3932882_SNP [dm3] X_4038849_SNP [dm6]	A	G	2.928e^-4	0.959	INTERGENIC
2R	12299662	2R_12299662_SNP [dm3] 2R_16412157_SNP [dm6]	A	G	2.929e^-4	0.959	INTRON Sema-2b
2R	18753647	2R_18753647_SNP [dm3] 2R_22866124_SNP [dm6]	T	A	2.931e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11548603	3L_11548603_SNP [dm3] 3L_11555503_SNP [dm6]	G	T	2.933e^-4	0.959	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3971549	2L_3971549_SNP [dm3] 2L_3971549_SNP [dm6]	T	C	2.934e^-4	0.959	INTRON fred
3R	19144647	3R_19144647_SNP [dm3] 3R_23318925_SNP [dm6]	T	C	2.941e^-4	0.959	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21286741	2L_21286741_SNP [dm3] 2L_21286741_SNP [dm6]	A	C	2.954e^-4	0.959	INTRON Mio
2R	18620685	2R_18620685_SNP [dm3] 2R_22733180_SNP [dm6]	G	A	2.958e^-4	0.959	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12758674	2L_12758674_SNP [dm3] 2L_12758674_SNP [dm6]	C	T	2.960e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18752644	2R_18752644_SNP [dm3] 2R_22865121_SNP [dm6]	A	C	2.982e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	4586084	X_4586084_DEL [dm3] X_4692051_DEL [dm6]	TT	T	2.997e^-4	0.959	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3R	25317882	3R_25317882_SNP [dm3] 3R_29492160_SNP [dm6]	T	C	2.998e^-4	0.959	DOWNSTREAM CG2006 INTRON CG2310	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9476476	3R_9476476_DEL [dm3] 3R_13650754_DEL [dm6]	TTGGGT	T	3.005e^-4	0.959	INTRON rin
2L	10578121	2L_10578121_SNP [dm3] 2L_10578121_SNP [dm6]	C	T	3.008e^-4	0.959	UPSTREAM w-cup INTRON Trim9
3R	19257384	3R_19257384_INS [dm3] 3R_23431662_INS [dm6]	T	TG	3.016e^-4	0.959	UPSTREAM CG4374 INTRON CG4374
3L	14533797	3L_14533797_SNP [dm3] 3L_14540697_SNP [dm6]	C	T	3.026e^-4	0.959	DOWNSTREAM CG9238 & 1 other INTERGENIC
2R	19536203	2R_19536203_SNP [dm3] 2R_23648680_SNP [dm6]	T	C	3.027e^-4	0.959	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9898777	2R_9898777_SNP [dm3] 2R_14011272_SNP [dm6]	A	T	3.029e^-4	0.959	INTRON mam
3L	4809574	3L_4809574_SNP [dm3] 3L_4809574_SNP [dm6]	A	T	3.034e^-4	0.959	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5535360	2L_5535360_SNP [dm3] 2L_5535360_SNP [dm6]	T	C	3.035e^-4	0.959	DOWNSTREAM tomb INTRON Cap-D3
X	2860934	X_2860934_SNP [dm3] X_2966901_SNP [dm6]	A	C	3.037e^-4	0.959	INTRON kirre & 1 other
3L	18326226	3L_18326226_DEL [dm3] 3L_18333126_DEL [dm6]	ACGATA	A	3.039e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	1176817	2L_1176817_SNP [dm3] 2L_1176817_SNP [dm6]	C	T	3.041e^-4	0.959	SYNONYMOUS_CODING CG4887 UPSTREAM CG4896	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8304831	3L_8304831_SNP [dm3] 3L_8311731_SNP [dm6]	G	A	3.043e^-4	0.959	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5396633	X_5396633_SNP [dm3] X_5502600_SNP [dm6]	G	A	3.046e^-4	0.959	UTR_3_PRIME CG4151 DOWNSTREAM CG4151
3L	2673340	3L_2673340_SNP [dm3] 3L_2673340_SNP [dm6]	A	G	3.048e^-4	0.959	INTRON Fife
3L	9276382	3L_9276382_DEL [dm3] 3L_9283282_DEL [dm6]	AT	A	3.050e^-4	0.959	INTRON GluRIB
2L	4187834	2L_4187834_SNP [dm3] 2L_4187834_SNP [dm6]	G	A	3.066e^-4	0.959	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12884846	3L_12884846_SNP [dm3] 3L_12891746_SNP [dm6]	C	A	3.072e^-4	0.959	NON_SYNONYMOUS_CODING CG43894 UPSTREAM CG14118 DOWNSTREAM CG43894
3L	10071053	3L_10071053_SNP [dm3] 3L_10077953_SNP [dm6]	A	C	3.077e^-4	0.959	INTRON dpr6	TF binding site mE1_TFBS_cad
3L	10779258	3L_10779258_SNP [dm3] 3L_10786158_SNP [dm6]	C	A	3.081e^-4	0.959	DOWNSTREAM CR44544 INTERGENIC
2R	19215121	2R_19215121_SNP [dm3] 2R_23327598_SNP [dm6]	T	C	3.089e^-4	0.959	UPSTREAM CG30417 DOWNSTREAM CG9861 INTERGENIC
3L	18868479	3L_18868479_SNP [dm3] 3L_18875379_SNP [dm6]	C	G	3.093e^-4	0.959	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
2R	7135263	2R_7135263_SNP [dm3] 2R_11247758_SNP [dm6]	G	T	3.095e^-4	0.959	UPSTREAM CG34227 INTERGENIC
3L	6160496	3L_6160496_SNP [dm3] 3L_6167396_SNP [dm6]	G	A	3.112e^-4	0.959	UTR_3_PRIME CG10289
2R	19604950	2R_19604950_DEL [dm3] 2R_23717427_DEL [dm6]	TA	T	3.115e^-4	0.959	INTRON Sesn	TF binding site mE1_TFBS_chinmo
X	14116571	X_14116571_INS [dm3] X_14222538_INS [dm6]	T	TA	3.118e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	6188993	3R_6188993_SNP [dm3] 3R_10363271_SNP [dm6]	C	T	3.125e^-4	0.959	SYNONYMOUS_CODING Rfx	TF binding site mE1_TFBS_cad
2R	13742787	2R_13742787_SNP [dm3] 2R_17855282_SNP [dm6]	T	G	3.126e^-4	0.959	UTR_5_PRIME olf186-F DOWNSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
3L	7369715	3L_7369715_SNP [dm3] 3L_7376615_SNP [dm6]	T	C	3.134e^-4	0.959	INTRON SMSr
X	4970340	X_4970340_SNP [dm3] X_5076307_SNP [dm6]	G	C	3.146e^-4	0.959	UTR_3_PRIME CG32767 DOWNSTREAM CG32767
X	18991583	X_18991583_SNP [dm3] X_19097550_SNP [dm6]	G	C	3.146e^-4	0.959	INTERGENIC
X	14116553	X_14116553_SNP [dm3] X_14222520_SNP [dm6]	T	A	3.153e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
X	16366037	X_16366037_SNP [dm3] X_16472004_SNP [dm6]	C	T	3.154e^-4	0.959	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13441133	3R_13441133_SNP [dm3] 3R_17615411_SNP [dm6]	A	T	3.158e^-4	0.959	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3L	3695614	3L_3695614_SNP [dm3] 3L_3695614_SNP [dm6]	G	C	3.162e^-4	0.959	INTERGENIC
2L	16448658	2L_16448658_SNP [dm3] 2L_16448658_SNP [dm6]	T	G	3.168e^-4	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
X	9651206	X_9651206_SNP [dm3] X_9757173_SNP [dm6]	T	C	3.170e^-4	0.959	DOWNSTREAM Sp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2852966	3L_2852966_SNP [dm3] 3L_2852966_SNP [dm6]	A	T	3.177e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14054249	3L_14054249_SNP [dm3] 3L_14061149_SNP [dm6]	A	G	3.178e^-4	0.959	INTRON CG32138
3L	15971318	3L_15971318_SNP [dm3] 3L_15978218_SNP [dm6]	A	G	3.180e^-4	0.959	SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
3R	10576860	3R_10576860_SNP [dm3] 3R_14751138_SNP [dm6]	A	G	3.182e^-4	0.959	UTR_5_PRIME smp-30 DOWNSTREAM CG7362 INTRON jvl
3L	8797466	3L_8797466_SNP [dm3] 3L_8804366_SNP [dm6]	G	T	3.202e^-4	0.959	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
2R	16757355	2R_16757355_SNP [dm3] 2R_20869850_SNP [dm6]	T	C	3.203e^-4	0.959	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7181575	3L_7181575_DEL [dm3] 3L_7188475_DEL [dm6]	AA	A	3.215e^-4	0.959	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi
3R	23240673	3R_23240673_SNP [dm3] 3R_27414951_SNP [dm6]	T	A	3.221e^-4	0.959	INTRON side
2L	7020154	2L_7020154_SNP [dm3] 2L_7020154_SNP [dm6]	G	A	3.228e^-4	0.959	INTRON ade3
3L	14594374	3L_14594374_SNP [dm3] 3L_14601274_SNP [dm6]	T	A	3.229e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4089644	3L_4089644_SNP [dm3] 3L_4089644_SNP [dm6]	T	G	3.230e^-4	0.959	UPSTREAM Gad1 INTRON CG14989
2R	17904205	2R_17904205_SNP [dm3] 2R_22016700_SNP [dm6]	T	C	3.230e^-4	0.959	INTRON CG34370
3R	21901181	3R_21901181_SNP [dm3] 3R_26075459_SNP [dm6]	G	A	3.231e^-4	0.959	INTERGENIC
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	3.232e^-4	0.959	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3L	14587972	3L_14587972_DEL [dm3] 3L_14594872_DEL [dm6]	TCT	T	3.238e^-4	0.959	INTRON HGTX	TF binding site mE1_TFBS_cnc
X	6956979	X_6956979_SNP [dm3] X_7062946_SNP [dm6]	C	T	3.241e^-4	0.959	INTRON CG12541
X	12089607	X_12089607_SNP [dm3] X_12195574_SNP [dm6]	C	A	3.242e^-4	0.959	INTRON Ten-a
2L	16056466	2L_16056466_SNP [dm3] 2L_16056466_SNP [dm6]	A	T	3.245e^-4	0.959	INTRON beat-Ia
X	14762003	X_14762003_SNP [dm3] X_14867970_SNP [dm6]	T	C	3.246e^-4	0.959	INTRON Flo2 & 1 other
X	4608176	X_4608176_SNP [dm3] X_4714143_SNP [dm6]	C	T	3.265e^-4	0.959	INTRON Proc-R
3L	14766481	3L_14766481_SNP [dm3] 3L_14773381_SNP [dm6]	G	A	3.268e^-4	0.959	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14594421	3L_14594421_SNP [dm3] 3L_14601321_SNP [dm6]	C	T	3.274e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10169003	2L_10169003_SNP [dm3] 2L_10169003_SNP [dm6]	G	A	3.275e^-4	0.959	INTRON CG44153
X	4586128	X_4586128_SNP [dm3] X_4692095_SNP [dm6]	C	T	3.276e^-4	0.959	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3R	15033139	3R_15033139_SNP [dm3] 3R_19207417_SNP [dm6]	C	T	3.283e^-4	0.959	INTERGENIC
3L	15971168	3L_15971168_SNP [dm3] 3L_15978068_SNP [dm6]	T	C	3.293e^-4	0.959	SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
3R	13478367	3R_13478367_SNP [dm3] 3R_17652645_SNP [dm6]	A	T	3.297e^-4	0.959	INTRON CG14322 EXON CR45223
2R	18916305	2R_18916305_SNP [dm3] 2R_23028782_SNP [dm6]	G	C	3.298e^-4	0.959	INTRON twi & 1 other
2L	10782792	2L_10782792_SNP [dm3] 2L_10782792_SNP [dm6]	A	T	3.301e^-4	0.959	INTRON CG31869
2R	15299516	2R_15299516_SNP [dm3] 2R_19412011_SNP [dm6]	C	T	3.311e^-4	0.959	UPSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	10171386	2L_10171386_SNP [dm3] 2L_10171386_SNP [dm6]	A	T	3.313e^-4	0.959	INTRON CG44153
2L	7259194	2L_7259194_SNP [dm3] 2L_7259194_SNP [dm6]	G	A	3.329e^-4	0.959	DOWNSTREAM CG31909 INTRON Wnt4
2L	14034978	2L_14034978_SNP [dm3] 2L_14034978_SNP [dm6]	C	T	3.332e^-4	0.959	EXON CR45284
2L	5303059	2L_5303059_SNP [dm3] 2L_5303059_SNP [dm6]	C	G	3.335e^-4	0.959	INTRON vri
3R	26135485	3R_26135485_SNP [dm3] 3R_30309763_SNP [dm6]	A	T	3.337e^-4	0.959	INTRON hdc	TF binding site BDTNP1_TFBS_twi
X	17121413	X_17121413_SNP [dm3] X_17227380_SNP [dm6]	G	T	3.337e^-4	0.959	UPSTREAM CG10598 INTERGENIC
3L	2676652	3L_2676652_SNP [dm3] 3L_2676652_SNP [dm6]	A	G	3.338e^-4	0.959	INTRON Fife	TF binding site BDTNP1_TFBS_sna
2R	16251886	2R_16251886_SNP [dm3] 2R_20364381_SNP [dm6]	A	T	3.341e^-4	0.959	INTERGENIC
2L	4577139	2L_4577139_SNP [dm3] 2L_4577139_SNP [dm6]	A	C	3.344e^-4	0.959	DOWNSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	8684668	3L_8684668_SNP [dm3] 3L_8691568_SNP [dm6]	G	T	3.348e^-4	0.959	INTERGENIC
3R	10604871	3R_10604871_SNP [dm3] 3R_14779149_SNP [dm6]	G	T	3.348e^-4	0.959	INTRON jvl
3R	13019603	3R_13019603_SNP [dm3] 3R_17193881_SNP [dm6]	A	G	3.349e^-4	0.959	INTRON Mur89F
3L	14550117	3L_14550117_SNP [dm3] 3L_14557017_SNP [dm6]	T	C	3.355e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20486896	3R_20486896_SNP [dm3] 3R_24661174_SNP [dm6]	C	T	3.358e^-4	0.959	SYNONYMOUS_CODING Ppox DOWNSTREAM CG31126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12378518	X_12378518_SNP [dm3] X_12484485_SNP [dm6]	T	C	3.358e^-4	0.959	INTERGENIC
2R	19604860	2R_19604860_SNP [dm3] 2R_23717337_SNP [dm6]	G	A	3.369e^-4	0.959	INTRON Sesn	TF binding site mE1_TFBS_chinmo
X	14116471	X_14116471_SNP [dm3] X_14222438_SNP [dm6]	T	A	3.370e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
X	11322401	X_11322401_SNP [dm3] X_11428368_SNP [dm6]	A	C	3.376e^-4	0.959	INTRON Gs2
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	3.376e^-4	0.959	INTERGENIC
X	11841324	X_11841324_INS [dm3] X_11947291_INS [dm6]	T	TGGAATCTTTAGATCGATTT...	3.392e^-4	0.959	INTRON cac
2L	13423538	2L_13423538_INS [dm3] 2L_13423538_INS [dm6]	A	AA	3.396e^-4	0.959	INTRON CG42784
3L	11122307	3L_11122307_SNP [dm3] 3L_11129207_SNP [dm6]	T	C	3.397e^-4	0.959	UTR_5_PRIME CG42575 UPSTREAM CG42575
3L	14533753	3L_14533753_SNP [dm3] 3L_14540653_SNP [dm6]	C	T	3.399e^-4	0.959	DOWNSTREAM CG9238 & 1 other INTERGENIC
2R	10192339	2R_10192339_SNP [dm3] 2R_14304834_SNP [dm6]	C	T	3.404e^-4	0.959	INTERGENIC
3R	16566550	3R_16566550_SNP [dm3] 3R_20740828_SNP [dm6]	C	T	3.411e^-4	0.959	INTRON CG42322
2R	3740537	2R_3740537_INS [dm3] 2R_7853032_INS [dm6]	A	AA	3.426e^-4	0.959	INTRON Dgk
2R	11274393	2R_11274393_SNP [dm3] 2R_15386888_SNP [dm6]	A	C	3.426e^-4	0.959	UTR_3_PRIME SRPK DOWNSTREAM SRPK
2L	6532591	2L_6532591_SNP [dm3] 2L_6532591_SNP [dm6]	C	T	3.431e^-4	0.959	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16133788	2R_16133788_INS [dm3] 2R_20246283_INS [dm6]	A	AAAA	3.432e^-4	0.959	UPSTREAM CG11208 INTRON ppk6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3457390	2L_3457390_SNP [dm3] 2L_3457390_SNP [dm6]	C	G	3.440e^-4	0.959	UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8806802	3L_8806802_SNP [dm3] 3L_8813702_SNP [dm6]	C	T	3.443e^-4	0.959	INTERGENIC
X	2839332	X_2839332_SNP [dm3] X_2945299_SNP [dm6]	T	G	3.445e^-4	0.959	UPSTREAM CG14423 DOWNSTREAM CG14422 INTRON kirre
3L	16726659	3L_16726659_SNP [dm3] 3L_16733559_SNP [dm6]	G	A	3.447e^-4	0.959	UTR_5_PRIME CG9701
X	5747576	X_5747576_SNP [dm3] X_5853543_SNP [dm6]	C	T	3.449e^-4	0.959	UPSTREAM CG43136 INTERGENIC
X	3030317	X_3030317_SNP [dm3] X_3136284_SNP [dm6]	A	G	3.452e^-4	0.959	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6542255	2L_6542255_SNP [dm3] 2L_6542255_SNP [dm6]	G	A	3.453e^-4	0.959	INTRON eya	TF binding site mE1_TFBS_Kr
2L	18880544	2L_18880544_SNP [dm3] 2L_18880544_SNP [dm6]	G	T	3.456e^-4	0.959	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9904327	2R_9904327_SNP [dm3] 2R_14016822_SNP [dm6]	A	T	3.460e^-4	0.959	INTRON mam
3L	6291139	3L_6291139_SNP [dm3] 3L_6298039_SNP [dm6]	T	A	3.466e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8832728	3L_8832728_SNP [dm3] 3L_8839628_SNP [dm6]	T	C	3.468e^-4	0.959	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11735691	2R_11735691_SNP [dm3] 2R_15848186_SNP [dm6]	T	G	3.475e^-4	0.959	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2R	18751955	2R_18751955_SNP [dm3] 2R_22864432_SNP [dm6]	G	T	3.478e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	9898757	2R_9898757_SNP [dm3] 2R_14011252_SNP [dm6]	A	G	3.482e^-4	0.959	INTRON mam
2L	10578136	2L_10578136_SNP [dm3] 2L_10578136_SNP [dm6]	G	A	3.499e^-4	0.959	UPSTREAM w-cup INTRON Trim9
2L	15468971	2L_15468971_SNP [dm3] 2L_15468971_SNP [dm6]	T	C	3.503e^-4	0.959	EXON CR45353
3L	16726678	3L_16726678_SNP [dm3] 3L_16733578_SNP [dm6]	T	C	3.504e^-4	0.959	UTR_5_PRIME CG9701
2L	2656190	2L_2656190_SNP [dm3] 2L_2656190_SNP [dm6]	C	A	3.506e^-4	0.959	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a
2R	16022106	2R_16022106_SNP [dm3] 2R_20134601_SNP [dm6]	C	T	3.508e^-4	0.959	INTERGENIC
2L	13147668	2L_13147668_SNP [dm3] 2L_13147668_SNP [dm6]	C	T	3.510e^-4	0.959	DOWNSTREAM CR44199 INTERGENIC
2R	9441952	2R_9441952_SNP [dm3] 2R_13554447_SNP [dm6]	C	A	3.516e^-4	0.959	SYNONYMOUS_CODING Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10461980	2R_10461980_SNP [dm3] 2R_14574475_SNP [dm6]	C	T	3.518e^-4	0.959	INTRON ttv & 1 other	TF binding site BDTNP1_TFBS_dl
3L	877683	3L_877683_INS [dm3] 3L_877683_INS [dm6]	T	TT	3.521e^-4	0.959	UTR_3_PRIME CG13907 INTRON CG32479
X	8215771	X_8215771_SNP [dm3] X_8321738_SNP [dm6]	G	A	3.525e^-4	0.959	INTRON nAChRalpha3
2L	870046	2L_870046_SNP [dm3] 2L_870046_SNP [dm6]	G	C	3.528e^-4	0.959	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	12667030	X_12667030_SNP [dm3] X_12772997_SNP [dm6]	A	C	3.529e^-4	0.959	UTR_3_PRIME CG32647 DOWNSTREAM CG32647 & 1 other
2L	8308442	2L_8308442_SNP [dm3] 2L_8308442_SNP [dm6]	A	T	3.539e^-4	0.959	UTR_5_PRIME CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14594418	3L_14594418_SNP [dm3] 3L_14601318_SNP [dm6]	T	A	3.543e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	5396620	X_5396620_SNP [dm3] X_5502587_SNP [dm6]	G	T	3.552e^-4	0.959	UTR_3_PRIME CG4151 DOWNSTREAM CG4151
2L	7076274	2L_7076274_SNP [dm3] 2L_7076274_SNP [dm6]	A	G	3.564e^-4	0.959	INTRON Pvf2	TF binding site mE1_TFBS_cad
X	19027710	X_19027710_SNP [dm3] X_19133677_SNP [dm6]	G	A	3.571e^-4	0.959	DOWNSTREAM CR45711 INTERGENIC
2R	7483054	2R_7483054_DEL [dm3] 2R_11595549_DEL [dm6]	ATAATATAATAA...	A	3.574e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2656145	2L_2656145_SNP [dm3] 2L_2656145_SNP [dm6]	G	C	3.574e^-4	0.959	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
2L	7998024	2L_7998024_INS [dm3] 2L_7998024_INS [dm6]	T	TT	3.574e^-4	0.959	UPSTREAM CG7227 & 1 other INTRON CG7227	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2438967	X_2438967_SNP [dm3] X_2544934_SNP [dm6]	C	G	3.574e^-4	0.959	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
2R	13817016	2R_13817016_SNP [dm3] 2R_17929511_SNP [dm6]	A	T	3.576e^-4	0.959	INTERGENIC
2R	3314627	2R_3314627_SNP [dm3] 2R_7427122_SNP [dm6]	G	T	3.579e^-4	0.959	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15937344	3L_15937344_SNP [dm3] 3L_15944244_SNP [dm6]	G	A	3.580e^-4	0.959	INTRON Pka-C3
2R	6737153	2R_6737153_SNP [dm3] 2R_10849648_SNP [dm6]	A	G	3.581e^-4	0.959	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3L	15286779	3L_15286779_SNP [dm3] 3L_15293679_SNP [dm6]	C	T	3.586e^-4	0.959	INTERGENIC
3L	2677557	3L_2677557_SNP [dm3] 3L_2677557_SNP [dm6]	G	A	3.587e^-4	0.959	INTRON Fife
2L	9439257	2L_9439257_SNP [dm3] 2L_9439257_SNP [dm6]	T	C	3.595e^-4	0.959	DOWNSTREAM CG33723 INTRON numb
3R	13019604	3R_13019604_INS [dm3] 3R_17193882_INS [dm6]	A	AACCTATTGAACCTATTGAA...	3.596e^-4	0.959	INTRON Mur89F
3R	21538533	3R_21538533_SNP [dm3] 3R_25712811_SNP [dm6]	A	T	3.603e^-4	0.959	INTRON LpR2
3R	4581643	3R_4581643_SNP [dm3] 3R_8755921_SNP [dm6]	G	A	3.603e^-4	0.959	UTR_5_PRIME CG34135 & 1 other DOWNSTREAM CR44228	TF binding site mE1_TFBS_cad
2R	9898776	2R_9898776_SNP [dm3] 2R_14011271_SNP [dm6]	T	A	3.606e^-4	0.959	INTRON mam
X	14370093	X_14370093_SNP [dm3] X_14476060_SNP [dm6]	T	C	3.609e^-4	0.959	INTRON CG9411
2R	6738365	2R_6738365_SNP [dm3] 2R_10850860_SNP [dm6]	C	T	3.610e^-4	0.959	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
3R	27130555	3R_27130555_DEL [dm3] 3R_31304833_DEL [dm6]	AA	A	3.611e^-4	0.959	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16842120	2R_16842120_SNP [dm3] 2R_20954615_SNP [dm6]	A	T	3.612e^-4	0.959	DOWNSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20722729	3R_20722729_SNP [dm3] 3R_24897007_SNP [dm6]	G	T	3.625e^-4	0.959	SYNONYMOUS_CODING CG11069 DOWNSTREAM CG13643
X	8111979	X_8111979_SNP [dm3] X_8217946_SNP [dm6]	A	T	3.634e^-4	0.959	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	6235066	3R_6235066_SNP [dm3] 3R_10409344_SNP [dm6]	G	T	3.636e^-4	0.959	SYNONYMOUS_CODING Irp-1B DOWNSTREAM mir-318	TF binding site mE1_TFBS_chinmo
3L	1332663	3L_1332663_SNP [dm3] 3L_1332663_SNP [dm6]	G	A	3.648e^-4	0.959	SYNONYMOUS_CODING msd5 DOWNSTREAM CG2211 & 1 other
2R	16133786	2R_16133786_SNP [dm3] 2R_20246281_SNP [dm6]	G	A	3.653e^-4	0.959	UPSTREAM CG11208 INTRON ppk6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15286797	3L_15286797_SNP [dm3] 3L_15293697_SNP [dm6]	A	G	3.654e^-4	0.959	INTERGENIC
X	12089962	X_12089962_SNP [dm3] X_12195929_SNP [dm6]	G	A	3.654e^-4	0.959	SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2258020	2L_2258020_SNP [dm3] 2L_2258020_SNP [dm6]	A	T	3.658e^-4	0.959	UPSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6445633	2L_6445633_SNP [dm3] 2L_6445633_SNP [dm6]	G	T	3.661e^-4	0.959	INTRON CG9527
3R	6640523	3R_6640523_SNP [dm3] 3R_10814801_SNP [dm6]	G	T	3.669e^-4	0.959	SYNONYMOUS_CODING CG14693 UPSTREAM CG4089
2R	8717228	2R_8717228_SNP [dm3] 2R_12829723_SNP [dm6]	G	A	3.670e^-4	0.959	INTERGENIC
3L	1430260	3L_1430260_SNP [dm3] 3L_1430260_SNP [dm6]	A	G	3.672e^-4	0.959	INTRON Ptp61F
X	13933719	X_13933719_SNP [dm3] X_14039686_SNP [dm6]	T	C	3.675e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15529157	2R_15529157_SNP [dm3] 2R_19641652_SNP [dm6]	A	G	3.678e^-4	0.959	INTERGENIC
3L	6433802	3L_6433802_SNP [dm3] 3L_6440702_SNP [dm6]	T	C	3.682e^-4	0.959	INTRON CG42747
X	12378487	X_12378487_SNP [dm3] X_12484454_SNP [dm6]	T	C	3.682e^-4	0.959	INTERGENIC
2R	9360900	2R_9360900_SNP [dm3] 2R_13473395_SNP [dm6]	C	T	3.686e^-4	0.959	INTRON arr	TF binding site BDTNP1_TFBS_dl
X	14787934	X_14787934_SNP [dm3] X_14893901_SNP [dm6]	C	T	3.691e^-4	0.959	INTRON Flo2 & 1 other
2L	5302962	2L_5302962_SNP [dm3] 2L_5302962_SNP [dm6]	A	G	3.692e^-4	0.959	INTRON vri
3L	6433825	3L_6433825_SNP [dm3] 3L_6440725_SNP [dm6]	G	A	3.693e^-4	0.959	INTRON CG42747
X	16413597	X_16413597_SNP [dm3] X_16519564_SNP [dm6]	G	T	3.694e^-4	0.959	INTRON para
3L	9392283	3L_9392283_SNP [dm3] 3L_9399183_SNP [dm6]	A	T	3.695e^-4	0.959	UTR_5_PRIME CG4080 DOWNSTREAM eIF-4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11340287	3L_11340287_SNP [dm3] 3L_11347187_SNP [dm6]	G	T	3.697e^-4	0.959	INTERGENIC
3R	18634889	3R_18634889_SNP [dm3] 3R_22809167_SNP [dm6]	C	A	3.714e^-4	0.959	INTERGENIC
3R	10377224	3R_10377224_SNP [dm3] 3R_14551502_SNP [dm6]	A	T	3.714e^-4	0.959	INTRON Pde6
2L	12770001	2L_12770001_SNP [dm3] 2L_12770001_SNP [dm6]	C	T	3.720e^-4	0.959	INTERGENIC
3L	22475650	3L_22475650_SNP [dm3] 3L_22482550_SNP [dm6]	C	T	3.726e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16813515	X_16813515_SNP [dm3] X_16919482_SNP [dm6]	T	G	3.737e^-4	0.959	INTRON CG4928
3L	3695601	3L_3695601_SNP [dm3] 3L_3695601_SNP [dm6]	C	T	3.751e^-4	0.959	INTERGENIC
3R	22784418	3R_22784418_SNP [dm3] 3R_26958696_SNP [dm6]	T	C	3.758e^-4	0.959	UPSTREAM CG6330 INTERGENIC
3L	5907324	3L_5907324_SNP [dm3] 3L_5914224_SNP [dm6]	T	C	3.760e^-4	0.959	INTRON CG13288
3R	27115261	3R_27115261_SNP [dm3] 3R_31289539_SNP [dm6]	G	A	3.764e^-4	0.959	INTERGENIC
3R	27118612	3R_27118612_SNP [dm3] 3R_31292890_SNP [dm6]	C	T	3.769e^-4	0.959	INTERGENIC
2L	12770158	2L_12770158_SNP [dm3] 2L_12770158_SNP [dm6]	G	T	3.781e^-4	0.959	INTERGENIC
3L	4470366	3L_4470366_SNP [dm3] 3L_4470366_SNP [dm6]	G	A	3.782e^-4	0.959	NON_SYNONYMOUS_CODING CG32249
X	12881234	X_12881234_SNP [dm3] X_12987201_SNP [dm6]	G	A	3.789e^-4	0.959	INTERGENIC
3R	26445623	3R_26445623_SNP [dm3] 3R_30619901_SNP [dm6]	G	A	3.796e^-4	0.959	INTRON CG44954
2L	6445602	2L_6445602_SNP [dm3] 2L_6445602_SNP [dm6]	T	A	3.798e^-4	0.959	INTRON CG9527
X	432294	X_432294_SNP [dm3] X_538261_SNP [dm6]	T	C	3.801e^-4	0.959	INTRON Appl	TF binding site mE1_TFBS_chinmo
2L	9123351	2L_9123351_SNP [dm3] 2L_9123351_SNP [dm6]	C	A	3.804e^-4	0.959	UPSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26566167	3R_26566167_SNP [dm3] 3R_30740445_SNP [dm6]	A	C	3.805e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18617699	2R_18617699_SNP [dm3] 2R_22730194_SNP [dm6]	C	G	3.812e^-4	0.959	SYNONYMOUS_CODING jbug UPSTREAM jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	8276822	2R_8276822_SNP [dm3] 2R_12389317_SNP [dm6]	A	C	3.815e^-4	0.959	SYNONYMOUS_CODING Cpr49Ac UTR_3_PRIME Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4869652	2L_4869652_SNP [dm3] 2L_4869652_SNP [dm6]	G	A	3.818e^-4	0.959	INTRON pog
X	14768754	X_14768754_SNP [dm3] X_14874721_SNP [dm6]	C	T	3.841e^-4	0.959	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2L	10937122	2L_10937122_SNP [dm3] 2L_10937122_SNP [dm6]	T	C	3.850e^-4	0.959	UTR_5_PRIME CG14072 UPSTREAM CG14072 INTRON dpr2
2L	3713231	2L_3713231_SNP [dm3] 2L_3713231_SNP [dm6]	A	T	3.852e^-4	0.959	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	5894702	3L_5894702_SNP [dm3] 3L_5901602_SNP [dm6]	A	C	3.853e^-4	0.959	DOWNSTREAM CG32409 INTRON QC
3L	5512971	3L_5512971_SNP [dm3] 3L_5519871_SNP [dm6]	A	G	3.854e^-4	0.959	INTRON Lkr
X	11322402	X_11322402_SNP [dm3] X_11428369_SNP [dm6]	T	C	3.857e^-4	0.959	INTRON Gs2
2R	7973965	2R_7973965_SNP [dm3] 2R_12086460_SNP [dm6]	G	T	3.871e^-4	0.959	UTR_3_PRIME jeb
3L	5597300	3L_5597300_SNP [dm3] 3L_5604200_SNP [dm6]	G	A	3.873e^-4	0.959	UPSTREAM mthl2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run
2R	6737496	2R_6737496_SNP [dm3] 2R_10849991_SNP [dm6]	C	G	3.875e^-4	0.959	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19027998	X_19027998_SNP [dm3] X_19133965_SNP [dm6]	T	C	3.876e^-4	0.959	DOWNSTREAM CR45711 INTERGENIC
3R	19389425	3R_19389425_SNP [dm3] 3R_23563703_SNP [dm6]	C	T	3.895e^-4	0.959	INTRON beat-IV
3R	18173745	3R_18173745_SNP [dm3] 3R_22348023_SNP [dm6]	C	T	3.908e^-4	0.959	INTERGENIC
3R	26032187	3R_26032187_SNP [dm3] 3R_30206465_SNP [dm6]	T	C	3.911e^-4	0.959	UTR_3_PRIME RpS7 DOWNSTREAM RpS7 & 4 others	TF binding site mE1_TFBS_sens
X	14115886	X_14115886_SNP [dm3] X_14221853_SNP [dm6]	A	G	3.914e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14115898	X_14115898_SNP [dm3] X_14221865_SNP [dm6]	T	G	3.914e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3812517	2L_3812517_SNP [dm3] 2L_3812517_SNP [dm6]	G	C	3.919e^-4	0.959	SYNONYMOUS_CODING CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9449214	2L_9449214_SNP [dm3] 2L_9449214_SNP [dm6]	C	G	3.922e^-4	0.959	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	8310030	3L_8310030_SNP [dm3] 3L_8316930_SNP [dm6]	G	C	3.928e^-4	0.959	INTERGENIC
3L	4016868	3L_4016868_SNP [dm3] 3L_4016868_SNP [dm6]	G	T	3.933e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12758734	2L_12758734_SNP [dm3] 2L_12758734_SNP [dm6]	T	C	3.942e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5266568	2L_5266568_SNP [dm3] 2L_5266568_SNP [dm6]	G	A	3.953e^-4	0.959	NON_SYNONYMOUS_CODING Cyp4ac2 DOWNSTREAM Cyp4ac1 INTRON tkv
X	2875789	X_2875789_SNP [dm3] X_2981756_SNP [dm6]	T	C	3.959e^-4	0.959	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	15203040	2R_15203040_SNP [dm3] 2R_19315535_SNP [dm6]	C	T	3.967e^-4	0.959	INTRON Rgk1
3L	423809	3L_423809_INS [dm3] 3L_423809_INS [dm6]	G	GAAG	3.972e^-4	0.959	INTERGENIC
2L	10405444	2L_10405444_SNP [dm3] 2L_10405444_SNP [dm6]	T	C	3.977e^-4	0.959	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	10002984	X_10002984_SNP [dm3] X_10108951_SNP [dm6]	C	T	3.978e^-4	0.959	INTRON RhoU
2R	4658960	2R_4658960_SNP [dm3] 2R_8771455_SNP [dm6]	G	T	3.982e^-4	0.959	INTERGENIC
3L	11809300	3L_11809300_SNP [dm3] 3L_11816200_SNP [dm6]	G	A	3.985e^-4	0.959	SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_sens
2L	9439202	2L_9439202_SNP [dm3] 2L_9439202_SNP [dm6]	T	C	3.995e^-4	0.959	DOWNSTREAM CG33723 INTRON numb
2L	4416957	2L_4416957_SNP [dm3] 2L_4416957_SNP [dm6]	C	T	3.996e^-4	0.959	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	14457163	3L_14457163_SNP [dm3] 3L_14464063_SNP [dm6]	G	A	4.006e^-4	0.959	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16872372	X_16872372_SNP [dm3] X_16978339_SNP [dm6]	A	G	4.010e^-4	0.959	INTRON CG45002
2L	1439567	2L_1439567_SNP [dm3] 2L_1439567_SNP [dm6]	A	G	4.010e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6422908	2L_6422908_SNP [dm3] 2L_6422908_SNP [dm6]	A	G	4.015e^-4	0.959	INTRON Tig
3R	12564758	3R_12564758_SNP [dm3] 3R_16739036_SNP [dm6]	C	G	4.017e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18010906	2R_18010906_SNP [dm3] 2R_22123401_SNP [dm6]	G	A	4.018e^-4	0.959	NON_SYNONYMOUS_CODING mei-S332 UPSTREAM Vrp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	7483082	2R_7483082_SNP [dm3] 2R_11595577_SNP [dm6]	C	G	4.021e^-4	0.959	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2677514	3L_2677514_SNP [dm3] 3L_2677514_SNP [dm6]	C	T	4.023e^-4	0.959	INTRON Fife
3R	10387141	3R_10387141_SNP [dm3] 3R_14561419_SNP [dm6]	G	A	4.024e^-4	0.959	SYNONYMOUS_CODING CG14850 UPSTREAM CG14851
2R	9360947	2R_9360947_SNP [dm3] 2R_13473442_SNP [dm6]	G	C	4.026e^-4	0.959	INTRON arr	TF binding site BDTNP1_TFBS_dl
2R	17904059	2R_17904059_SNP [dm3] 2R_22016554_SNP [dm6]	A	T	4.027e^-4	0.959	INTRON CG34370
X	3543217	X_3543217_SNP [dm3] X_3649184_SNP [dm6]	A	G	4.028e^-4	0.959	INTRON AstA-R1
2L	8379853	2L_8379853_SNP [dm3] 2L_8379853_SNP [dm6]	C	G	4.029e^-4	0.959	NON_SYNONYMOUS_CODING Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18419508	X_18419508_SNP [dm3] X_18525475_SNP [dm6]	A	G	4.030e^-4	0.959	INTRON Bx
3L	14533845	3L_14533845_SNP [dm3] 3L_14540745_SNP [dm6]	T	A	4.045e^-4	0.959	DOWNSTREAM CG9238 & 1 other INTERGENIC
X	15069958	X_15069958_SNP [dm3] X_15175925_SNP [dm6]	T	G	4.057e^-4	0.959	UTR_5_PRIME CG43737	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18326253	3L_18326253_SNP [dm3] 3L_18333153_SNP [dm6]	T	A	4.060e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10306135	3L_10306135_SNP [dm3] 3L_10313035_SNP [dm6]	T	A	4.069e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10171275	2L_10171275_SNP [dm3] 2L_10171275_SNP [dm6]	C	T	4.074e^-4	0.959	INTRON CG44153
X	2438968	X_2438968_SNP [dm3] X_2544935_SNP [dm6]	T	C	4.083e^-4	0.959	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
2R	10816174	2R_10816174_SNP [dm3] 2R_14928669_SNP [dm6]	A	T	4.087e^-4	0.959	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	11548600	3L_11548600_SNP [dm3] 3L_11555500_SNP [dm6]	A	C	4.098e^-4	0.959	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10221415	X_10221415_SNP [dm3] X_10327382_SNP [dm6]	T	G	4.101e^-4	0.959	SYNONYMOUS_CODING CG2909	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14115895	X_14115895_SNP [dm3] X_14221862_SNP [dm6]	T	G	4.106e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10523970	2L_10523970_SNP [dm3] 2L_10523970_SNP [dm6]	A	C	4.121e^-4	0.959	INTERGENIC
2L	10444245	2L_10444245_SNP [dm3] 2L_10444245_SNP [dm6]	A	G	4.131e^-4	0.959	INTRON loh	TF binding site BDTNP1_TFBS_twi
2L	7266268	2L_7266268_SNP [dm3] 2L_7266268_SNP [dm6]	T	A	4.134e^-4	0.959	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
3R	11297860	3R_11297860_SNP [dm3] 3R_15472138_SNP [dm6]	G	T	4.151e^-4	0.959	INTRON AdamTS-A
X	2646320	X_2646320_SNP [dm3] X_2752287_SNP [dm6]	T	G	4.154e^-4	0.959	UPSTREAM CR43494 INTRON kirre
3R	11310014	3R_11310014_SNP [dm3] 3R_15484292_SNP [dm6]	A	G	4.159e^-4	0.959	NON_SYNONYMOUS_CODING Rh6 DOWNSTREAM Trissin
3L	2853015	3L_2853015_DEL [dm3] 3L_2853015_DEL [dm6]	AA	A	4.172e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14116623	X_14116623_DEL [dm3] X_14222590_DEL [dm6]	AC	A	4.177e^-4	0.959	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3L	14533812	3L_14533812_DEL [dm3] 3L_14540712_DEL [dm6]	GTTGC	AAG	4.193e^-4	0.959	DOWNSTREAM CG9238 & 1 other INTERGENIC
3R	10377225	3R_10377225_SNP [dm3] 3R_14551503_SNP [dm6]	C	G	4.194e^-4	0.959	INTRON Pde6
3L	14999785	3L_14999785_SNP [dm3] 3L_15006685_SNP [dm6]	T	C	4.197e^-4	0.959	INTRON Reck	TF binding site mE1_TFBS_HSA
3L	19016735	3L_19016735_SNP [dm3] 3L_19023635_SNP [dm6]	T	G	4.198e^-4	0.959	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	2443879	2R_2443879_SNP [dm3] 2R_6556374_SNP [dm6]	G	A	4.208e^-4	0.959	INTRON jing
3L	16398685	3L_16398685_SNP [dm3] 3L_16405585_SNP [dm6]	T	A	4.209e^-4	0.959	SYNONYMOUS_CODING fax	TF binding site mE1_TFBS_sens
3R	16023335	3R_16023335_SNP [dm3] 3R_20197613_SNP [dm6]	T	C	4.211e^-4	0.959	INTERGENIC
2R	19604920	2R_19604920_SNP [dm3] 2R_23717397_SNP [dm6]	C	A	4.212e^-4	0.959	INTRON Sesn	TF binding site mE1_TFBS_chinmo
2L	12758008	2L_12758008_SNP [dm3] 2L_12758008_SNP [dm6]	T	A	4.215e^-4	0.959	INTERGENIC
3L	2435884	3L_2435884_SNP [dm3] 3L_2435884_SNP [dm6]	A	G	4.229e^-4	0.959	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13933820	X_13933820_SNP [dm3] X_14039787_SNP [dm6]	T	C	4.257e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13441131	3R_13441131_SNP [dm3] 3R_17615409_SNP [dm6]	G	T	4.260e^-4	0.959	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
X	16366015	X_16366015_SNP [dm3] X_16471982_SNP [dm6]	G	A	4.266e^-4	0.959	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9921580	X_9921580_SNP [dm3] X_10027547_SNP [dm6]	T	A	4.270e^-4	0.959	INTRON Cht6
2L	10194376	2L_10194376_SNP [dm3] 2L_10194376_SNP [dm6]	C	T	4.280e^-4	0.959	NON_SYNONYMOUS_CODING Sur
3R	10538381	3R_10538381_SNP [dm3] 3R_14712659_SNP [dm6]	C	A	4.283e^-4	0.959	INTRON kibra	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2R	7832288	2R_7832288_SNP [dm3] 2R_11944783_SNP [dm6]	G	T	4.290e^-4	0.959	INTRON CG13188
3L	1321487	3L_1321487_SNP [dm3] 3L_1321487_SNP [dm6]	A	C	4.304e^-4	0.959	DOWNSTREAM CG9184 INTRON Myo61F
X	13663424	X_13663424_SNP [dm3] X_13769391_SNP [dm6]	C	T	4.305e^-4	0.959	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_inv
3L	13271315	3L_13271315_SNP [dm3] 3L_13278215_SNP [dm6]	C	T	4.308e^-4	0.959	UTR_3_PRIME caps
3L	11340305	3L_11340305_INS [dm3] 3L_11347205_INS [dm6]	T	TACTTCAGGTGCACTT...	4.312e^-4	0.959	INTERGENIC
2R	13823716	2R_13823716_SNP [dm3] 2R_17936211_SNP [dm6]	T	C	4.326e^-4	0.959	INTERGENIC
2L	8380342	2L_8380342_SNP [dm3] 2L_8380342_SNP [dm6]	C	T	4.330e^-4	0.959	INTRON Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14787870	X_14787870_SNP [dm3] X_14893837_SNP [dm6]	G	A	4.333e^-4	0.959	INTRON Flo2 & 1 other
2L	12248168	2L_12248168_SNP [dm3] 2L_12248168_SNP [dm6]	A	G	4.344e^-4	0.959	INTRON aret
2R	15235729	2R_15235729_SNP [dm3] 2R_19348224_SNP [dm6]	C	A	4.348e^-4	0.959	INTRON Rgk1
2L	18420363	2L_18420363_SNP [dm3] 2L_18420363_SNP [dm6]	G	C	4.348e^-4	0.959	INTERGENIC
2R	7818080	2R_7818080_SNP [dm3] 2R_11930575_SNP [dm6]	C	G	4.353e^-4	0.959	UPSTREAM CR44312 INTERGENIC
2L	1722715	2L_1722715_SNP [dm3] 2L_1722715_SNP [dm6]	C	T	4.364e^-4	0.959	INTRON Rim2
2L	6532863	2L_6532863_SNP [dm3] 2L_6532863_SNP [dm6]	T	G	4.367e^-4	0.959	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10811081	2L_10811081_SNP [dm3] 2L_10811081_SNP [dm6]	G	T	4.379e^-4	0.959	INTRON Nos
2R	15785984	2R_15785984_SNP [dm3] 2R_19898479_SNP [dm6]	T	C	4.379e^-4	0.959	EXON CR44572
2L	12247874	2L_12247874_SNP [dm3] 2L_12247874_SNP [dm6]	A	C	4.381e^-4	0.959	INTRON aret
2L	5302992	2L_5302992_SNP [dm3] 2L_5302992_SNP [dm6]	G	C	4.381e^-4	0.959	INTRON vri
X	16219527	X_16219527_SNP [dm3] X_16325494_SNP [dm6]	A	G	4.384e^-4	0.959	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579	TF binding site mE1_TFBS_cad
3L	11340246	3L_11340246_SNP [dm3] 3L_11347146_SNP [dm6]	A	C	4.391e^-4	0.959	INTERGENIC
3R	22397111	3R_22397111_SNP [dm3] 3R_26571389_SNP [dm6]	G	A	4.395e^-4	0.959	INTRON scrib
3R	19466357	3R_19466357_SNP [dm3] 3R_23640635_SNP [dm6]	G	C	4.397e^-4	0.959	INTRON CG31145
3R	26986469	3R_26986469_SNP [dm3] 3R_31160747_SNP [dm6]	T	G	4.398e^-4	0.959	INTRON Gycbeta100B & 1 other
3L	1083620	3L_1083620_SNP [dm3] 3L_1083620_SNP [dm6]	A	G	4.408e^-4	0.959	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26609962	3R_26609962_SNP [dm3] 3R_30784240_SNP [dm6]	C	T	4.420e^-4	0.959	SYNONYMOUS_CODING zfh1 UPSTREAM CR45189	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16023853	2R_16023853_SNP [dm3] 2R_20136348_SNP [dm6]	T	A	4.425e^-4	0.959	UPSTREAM CR44635 DOWNSTREAM CR44634 INTERGENIC
X	2775880	X_2775880_SNP [dm3] X_2881847_SNP [dm6]	T	C	4.434e^-4	0.959	DOWNSTREAM CG14418 INTRON kirre
X	19159670	X_19159670_SNP [dm3] X_19265637_SNP [dm6]	C	G	4.438e^-4	0.959	INTRON Vav	TF binding site mE1_TFBS_HSA
3R	18417241	3R_18417241_SNP [dm3] 3R_22591519_SNP [dm6]	T	G	4.441e^-4	0.959	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11698442	3R_11698442_SNP [dm3] 3R_15872720_SNP [dm6]	A	G	4.446e^-4	0.959	INTRON CG31183
X	2875152	X_2875152_SNP [dm3] X_2981119_SNP [dm6]	T	C	4.455e^-4	0.959	INTRON kirre	regulatory region REDfly_CRMs
3R	26032164	3R_26032164_SNP [dm3] 3R_30206442_SNP [dm6]	A	C	4.455e^-4	0.959	DOWNSTREAM RpS7 & 4 others INTERGENIC	TF binding site mE1_TFBS_sens
2R	18753702	2R_18753702_SNP [dm3] 2R_22866179_SNP [dm6]	G	T	4.465e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12027246	3R_12027246_SNP [dm3] 3R_16201524_SNP [dm6]	A	C	4.469e^-4	0.959	INTRON CG6126
3R	20215141	3R_20215141_SNP [dm3] 3R_24389419_SNP [dm6]	T	A	4.469e^-4	0.959	INTRON CG5768
3L	7197788	3L_7197788_SNP [dm3] 3L_7204688_SNP [dm6]	T	A	4.470e^-4	0.959	INTERGENIC
3L	10992627	3L_10992627_SNP [dm3] 3L_10999527_SNP [dm6]	A	G	4.476e^-4	0.959	INTRON klu
2L	7995927	2L_7995927_SNP [dm3] 2L_7995927_SNP [dm6]	A	G	4.479e^-4	0.959	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15771854	3L_15771854_SNP [dm3] 3L_15778754_SNP [dm6]	C	G	4.483e^-4	0.959	INTERGENIC
X	2514411	X_2514411_SNP [dm3] X_2620378_SNP [dm6]	T	C	4.496e^-4	0.959	SYNONYMOUS_CODING Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13450075	2R_13450075_SNP [dm3] 2R_17562570_SNP [dm6]	G	T	4.504e^-4	0.959	INTRON Klp54D
2L	20555874	2L_20555874_SNP [dm3] 2L_20555874_SNP [dm6]	C	T	4.509e^-4	0.959	INTERGENIC
3L	18866643	3L_18866643_SNP [dm3] 3L_18873543_SNP [dm6]	C	T	4.509e^-4	0.959	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
3L	3261003	3L_3261003_SNP [dm3] 3L_3261003_SNP [dm6]	T	C	4.521e^-4	0.959	INTRON ckd
2L	3687260	2L_3687260_SNP [dm3] 2L_3687260_SNP [dm6]	C	T	4.523e^-4	0.959	INTRON CG34340
3L	10639896	3L_10639896_SNP [dm3] 3L_10646796_SNP [dm6]	G	A	4.536e^-4	0.959	INTRON CG32066
X	4587280	X_4587280_SNP [dm3] X_4693247_SNP [dm6]	C	A	4.544e^-4	0.959	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8852203	3L_8852203_SNP [dm3] 3L_8859103_SNP [dm6]	T	C	4.546e^-4	0.959	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11850951	2R_11850951_SNP [dm3] 2R_15963446_SNP [dm6]	C	T	4.549e^-4	0.959	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12454435	2R_12454435_SNP [dm3] 2R_16566930_SNP [dm6]	G	T	4.558e^-4	0.959	UTR_5_PRIME CG4945
2L	4353983	2L_4353983_SNP [dm3] 2L_4353983_SNP [dm6]	A	G	4.567e^-4	0.959	UTR_3_PRIME CG15429	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3R	3362389	3R_3362389_SNP [dm3] 3R_7536667_SNP [dm6]	G	C	4.572e^-4	0.959	UPSTREAM alpha-Est5 DOWNSTREAM alpha-Est4 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18941331	2R_18941331_DEL [dm3] 2R_23053808_DEL [dm6]	TAT	T	4.579e^-4	0.959	INTERGENIC
X	14842500	X_14842500_SNP [dm3] X_14948467_SNP [dm6]	A	T	4.580e^-4	0.959	INTRON pdgy	TF binding site mE1_TFBS_HSA
3R	4548573	3R_4548573_SNP [dm3] 3R_8722851_SNP [dm6]	T	C	4.584e^-4	0.959	SYNONYMOUS_CODING CG8136 UPSTREAM CG8145	TF binding site mE1_TFBS_cad
X	1665051	X_1665051_DEL [dm3] X_1771018_DEL [dm6]	CGCTTCC	C	4.585e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16868115	X_16868115_SNP [dm3] X_16974082_SNP [dm6]	G	C	4.606e^-4	0.959	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	4.618e^-4	0.959	INTERGENIC
2R	12264817	2R_12264817_SNP [dm3] 2R_16377312_SNP [dm6]	T	G	4.620e^-4	0.959	INTERGENIC
2R	7472684	2R_7472684_SNP [dm3] 2R_11585179_SNP [dm6]	A	G	4.620e^-4	0.959	NON_SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26470728	3R_26470728_SNP [dm3] 3R_30645006_SNP [dm6]	A	G	4.621e^-4	0.959	INTRON CG31013
2L	3016759	2L_3016759_SNP [dm3] 2L_3016759_SNP [dm6]	G	A	4.633e^-4	0.959	UTR_3_PRIME CG17224 DOWNSTREAM CG17265
2L	5580032	2L_5580032_SNP [dm3] 2L_5580032_SNP [dm6]	A	G	4.636e^-4	0.959	NON_SYNONYMOUS_CODING CG14011	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	410127	X_410127_SNP [dm3] X_516094_SNP [dm6]	G	A	4.640e^-4	0.959	UTR_3_PRIME elav DOWNSTREAM elav INTRON arg
2R	8275642	2R_8275642_SNP [dm3] 2R_12388137_SNP [dm6]	T	C	4.642e^-4	0.959	INTRON Cpr49Ac
2L	7995627	2L_7995627_SNP [dm3] 2L_7995627_SNP [dm6]	A	T	4.648e^-4	0.959	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2875570	X_2875570_SNP [dm3] X_2981537_SNP [dm6]	G	C	4.649e^-4	0.959	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	6928448	2R_6928448_SNP [dm3] 2R_11040943_SNP [dm6]	T	C	4.650e^-4	0.959	INTRON luna
3L	11548536	3L_11548536_SNP [dm3] 3L_11555436_SNP [dm6]	A	G	4.684e^-4	0.959	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20210035	3R_20210035_SNP [dm3] 3R_24384313_SNP [dm6]	G	T	4.698e^-4	0.959	INTRON CG17780
2R	4589741	2R_4589741_SNP [dm3] 2R_8702236_SNP [dm6]	T	G	4.706e^-4	0.959	UPSTREAM CG12376 & 1 other INTRON CG12376
3L	9392454	3L_9392454_SNP [dm3] 3L_9399354_SNP [dm6]	C	A	4.711e^-4	0.959	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9910803	2R_9910803_DEL [dm3] 2R_14023298_DEL [dm6]	CCAAA	C	4.713e^-4	0.959	INTRON mam
3R	13478402	3R_13478402_SNP [dm3] 3R_17652680_SNP [dm6]	T	A	4.718e^-4	0.959	INTRON CG14322 EXON CR45223
2R	11365196	2R_11365196_SNP [dm3] 2R_15477691_SNP [dm6]	G	A	4.728e^-4	0.959	INTRON CG8180
2R	4724574	2R_4724574_SNP [dm3] 2R_8837069_SNP [dm6]	A	G	4.731e^-4	0.959	INTRON sns
2R	9235011	2R_9235011_SNP [dm3] 2R_13347506_SNP [dm6]	A	T	4.732e^-4	0.959	INTRON CR44206
2L	13424096	2L_13424096_SNP [dm3] 2L_13424096_SNP [dm6]	C	A	4.733e^-4	0.959	INTRON CG42784
X	4969828	X_4969828_SNP [dm3] X_5075795_SNP [dm6]	A	C	4.738e^-4	0.959	UTR_3_PRIME CG32767 DOWNSTREAM CG32767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1669183	X_1669183_DEL [dm3] X_1775150_DEL [dm6]	TACG	T	4.739e^-4	0.959	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	20339878	X_20339878_SNP [dm3] X_20468851_SNP [dm6]	A	G	4.749e^-4	0.959	INTRON GstT3
X	10433579	X_10433579_SNP [dm3] X_10539546_SNP [dm6]	C	G	4.756e^-4	0.959	INTRON spri	TF binding site mE1_TFBS_HSA
3L	5500483	3L_5500483_SNP [dm3] 3L_5507383_SNP [dm6]	C	T	4.757e^-4	0.959	INTRON CG34342
3L	1029764	3L_1029764_SNP [dm3] 3L_1029764_SNP [dm6]	T	A	4.774e^-4	0.959	INTRON trio	TF binding site mE1_TFBS_cad
3R	20215145	3R_20215145_SNP [dm3] 3R_24389423_SNP [dm6]	G	T	4.780e^-4	0.959	INTRON CG5768
3L	15286762	3L_15286762_SNP [dm3] 3L_15293662_SNP [dm6]	C	T	4.784e^-4	0.959	INTERGENIC
2R	11574287	2R_11574287_SNP [dm3] 2R_15686782_SNP [dm6]	G	A	4.787e^-4	0.959	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082 DOWNSTREAM Cep89	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	10199013	3R_10199013_SNP [dm3] 3R_14373291_SNP [dm6]	G	C	4.788e^-4	0.959	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10199037	3R_10199037_SNP [dm3] 3R_14373315_SNP [dm6]	A	C	4.788e^-4	0.959	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10199040	3R_10199040_SNP [dm3] 3R_14373318_SNP [dm6]	C	A	4.788e^-4	0.959	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14645244	2R_14645244_SNP [dm3] 2R_18757739_SNP [dm6]	G	A	4.792e^-4	0.959	NON_SYNONYMOUS_CODING Jabba UTR_3_PRIME Jabba DOWNSTREAM Cyp12b2 & 1 other INTRON Jabba
3R	21538306	3R_21538306_SNP [dm3] 3R_25712584_SNP [dm6]	C	A	4.796e^-4	0.959	INTRON LpR2
2R	11735989	2R_11735989_SNP [dm3] 2R_15848484_SNP [dm6]	C	T	4.796e^-4	0.959	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2R	10723594	2R_10723594_SNP [dm3] 2R_14836089_SNP [dm6]	T	G	4.799e^-4	0.959	INTERGENIC
2R	17741332	2R_17741332_SNP [dm3] 2R_21853827_SNP [dm6]	A	T	4.800e^-4	0.959	INTERGENIC
2L	9598895	2L_9598895_SNP [dm3] 2L_9598895_SNP [dm6]	G	T	4.805e^-4	0.959	UTR_3_PRIME CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16926247	2R_16926247_SNP [dm3] 2R_21038742_SNP [dm6]	G	A	4.808e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	424209	3L_424209_DEL [dm3] 3L_424209_DEL [dm6]	TT	T	4.814e^-4	0.959	INTERGENIC
3L	9429327	3L_9429327_SNP [dm3] 3L_9436227_SNP [dm6]	G	A	4.814e^-4	0.959	SYNONYMOUS_CODING MTF-1 UPSTREAM CG42526	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8217676	2R_8217676_SNP [dm3] 2R_12330171_SNP [dm6]	T	C	4.817e^-4	0.959	SYNONYMOUS_CODING garz	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17856118	2R_17856118_SNP [dm3] 2R_21968613_SNP [dm6]	G	A	4.818e^-4	0.959	INTRON ppk9
2R	18757019	2R_18757019_SNP [dm3] 2R_22869496_SNP [dm6]	G	C	4.820e^-4	0.959	NON_SYNONYMOUS_CODING fd59A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5988960	2L_5988960_SNP [dm3] 2L_5988960_SNP [dm6]	G	T	4.822e^-4	0.959	DOWNSTREAM lid & 1 other INTERGENIC
2L	9125974	2L_9125974_DEL [dm3] 2L_9125974_DEL [dm6]	CG	C	4.830e^-4	0.959	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	1669192	X_1669192_SNP [dm3] X_1775159_SNP [dm6]	C	A	4.842e^-4	0.959	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	2690303	2R_2690303_SNP [dm3] 2R_6802798_SNP [dm6]	T	C	4.852e^-4	0.959	INTERGENIC
3R	5381552	3R_5381552_SNP [dm3] 3R_9555830_SNP [dm6]	A	C	4.854e^-4	0.959	UTR_5_PRIME CG8199 UPSTREAM CG9386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20935098	3L_20935098_SNP [dm3] 3L_20941998_SNP [dm6]	T	C	4.855e^-4	0.959	INTRON fng
2L	17482951	2L_17482951_SNP [dm3] 2L_17482951_SNP [dm6]	A	G	4.859e^-4	0.959	SYNONYMOUS_CODING CG6453 DOWNSTREAM CG5110	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17344366	2R_17344366_SNP [dm3] 2R_21456861_SNP [dm6]	C	T	4.873e^-4	0.959	INTRON Sdc
3R	6541411	3R_6541411_SNP [dm3] 3R_10715689_SNP [dm6]	C	T	4.876e^-4	0.959	SYNONYMOUS_CODING CG4073
2R	14064825	2R_14064825_SNP [dm3] 2R_18177320_SNP [dm6]	G	A	4.878e^-4	0.959	INTRON CG5726
2L	7988337	2L_7988337_DEL [dm3] 2L_7988337_DEL [dm6]	AA	A	4.884e^-4	0.959	INTRON pes	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16559847	3R_16559847_SNP [dm3] 3R_20734125_SNP [dm6]	T	A	4.884e^-4	0.959	UPSTREAM CR42786 INTERGENIC	TF binding site mE1_TFBS_sens
3L	1689181	3L_1689181_SNP [dm3] 3L_1689181_SNP [dm6]	A	T	4.897e^-4	0.959	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi
2R	18052463	2R_18052463_SNP [dm3] 2R_22164958_SNP [dm6]	C	T	4.912e^-4	0.959	SYNONYMOUS_CODING a UPSTREAM CG34206
2R	18782013	2R_18782013_SNP [dm3] 2R_22894490_SNP [dm6]	T	G	4.922e^-4	0.959	NON_SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9925572	X_9925572_SNP [dm3] X_10031539_SNP [dm6]	C	T	4.926e^-4	0.959	INTRON Cht6
3L	14615399	3L_14615399_INS [dm3] 3L_14622299_INS [dm6]	T	TT	4.945e^-4	0.959	UPSTREAM CG9628 DOWNSTREAM shd INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_Trl
3L	8832829	3L_8832829_SNP [dm3] 3L_8839729_SNP [dm6]	G	C	4.947e^-4	0.959	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6328394	2L_6328394_SNP [dm3] 2L_6328394_SNP [dm6]	A	G	4.954e^-4	0.959	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1187176	2L_1187176_SNP [dm3] 2L_1187176_SNP [dm6]	G	T	4.954e^-4	0.959	INTRON CG5001
2L	7544587	2L_7544587_SNP [dm3] 2L_7544587_SNP [dm6]	C	G	4.955e^-4	0.959	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	6629202	X_6629202_SNP [dm3] X_6735169_SNP [dm6]	A	G	4.964e^-4	0.959	INTRON CG3168 & 1 other
2R	17966314	2R_17966314_SNP [dm3] 2R_22078809_SNP [dm6]	G	A	4.967e^-4	0.959	UTR_3_PRIME GlcT-1
X	12866872	X_12866872_SNP [dm3] X_12972839_SNP [dm6]	T	G	4.972e^-4	0.959	NON_SYNONYMOUS_CODING CG15721 DOWNSTREAM CR43152 INTRON CR43636	TF binding site mE1_TFBS_sens
3L	1029777	3L_1029777_SNP [dm3] 3L_1029777_SNP [dm6]	C	T	4.972e^-4	0.959	INTRON trio	TF binding site mE1_TFBS_cad
3L	2671571	3L_2671571_SNP [dm3] 3L_2671571_SNP [dm6]	A	T	4.976e^-4	0.959	UTR_3_PRIME Fife INTRON Fife
3R	14367791	3R_14367791_SNP [dm3] 3R_18542069_SNP [dm6]	A	T	4.981e^-4	0.959	INTRON fru
3L	2102456	3L_2102456_SNP [dm3] 3L_2102456_SNP [dm6]	A	T	4.983e^-4	0.959	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11351807	2L_11351807_DEL [dm3] 2L_11351807_DEL [dm6]	TAATTT	T	4.991e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2R	16133062	2R_16133062_SNP [dm3] 2R_20245557_SNP [dm6]	A	T	5.000e^-4	0.959	UPSTREAM CG11208 DOWNSTREAM ppk6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8380339	2L_8380339_DEL [dm3] 2L_8380339_DEL [dm6]	TG	T	5.007e^-4	0.959	INTRON Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1029776	3L_1029776_SNP [dm3] 3L_1029776_SNP [dm6]	T	C	5.011e^-4	0.959	INTRON trio	TF binding site mE1_TFBS_cad
3L	1029781	3L_1029781_SNP [dm3] 3L_1029781_SNP [dm6]	A	G	5.011e^-4	0.959	INTRON trio	TF binding site mE1_TFBS_cad
X	9781861	X_9781861_SNP [dm3] X_9887828_SNP [dm6]	T	A	5.012e^-4	0.959	DOWNSTREAM CG15249 INTERGENIC
2L	5303074	2L_5303074_SNP [dm3] 2L_5303074_SNP [dm6]	A	G	5.016e^-4	0.959	INTRON vri
3R	22952994	3R_22952994_SNP [dm3] 3R_27127272_SNP [dm6]	G	T	5.024e^-4	0.959	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1082823	3R_1082823_SNP [dm3] 3R_5257101_SNP [dm6]	T	G	5.026e^-4	0.959	START_GAINED Hph UTR_5_PRIME Hph UPSTREAM CG12173	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	17856101	2R_17856101_SNP [dm3] 2R_21968596_SNP [dm6]	A	G	5.029e^-4	0.959	INTRON ppk9
3L	8636133	3L_8636133_SNP [dm3] 3L_8643033_SNP [dm6]	C	T	5.038e^-4	0.959	INTRON Cpr66D	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	6206836	3L_6206836_SNP [dm3] 3L_6213736_SNP [dm6]	C	T	5.045e^-4	0.959	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13478440	3R_13478440_SNP [dm3] 3R_17652718_SNP [dm6]	G	T	5.059e^-4	0.959	INTRON CG14322 EXON CR45223
2L	11559966	2L_11559966_SNP [dm3] 2L_11559966_SNP [dm6]	A	G	5.065e^-4	0.959	INTERGENIC
2L	6445632	2L_6445632_SNP [dm3] 2L_6445632_SNP [dm6]	G	A	5.080e^-4	0.959	INTRON CG9527
2R	18593710	2R_18593710_SNP [dm3] 2R_22706205_SNP [dm6]	A	G	5.086e^-4	0.959	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3030170	X_3030170_SNP [dm3] X_3136137_SNP [dm6]	A	T	5.093e^-4	0.959	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15963666	3L_15963666_SNP [dm3] 3L_15970566_SNP [dm6]	G	T	5.096e^-4	0.959	SYNONYMOUS_CODING brm DOWNSTREAM CG10516	TF binding site mE1_TFBS_sens
2L	9109914	2L_9109914_SNP [dm3] 2L_9109914_SNP [dm6]	T	C	5.096e^-4	0.959	INTERGENIC
3L	12638664	3L_12638664_SNP [dm3] 3L_12645564_SNP [dm6]	A	C	5.100e^-4	0.959	EXON CR32111
2L	4180487	2L_4180487_SNP [dm3] 2L_4180487_SNP [dm6]	T	A	5.100e^-4	0.959	INTERGENIC
X	9199129	X_9199129_SNP [dm3] X_9305096_SNP [dm6]	C	T	5.106e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14060881	3L_14060881_SNP [dm3] 3L_14067781_SNP [dm6]	A	G	5.112e^-4	0.959	SYNONYMOUS_CODING CG32138
3R	26975294	3R_26975294_SNP [dm3] 3R_31149572_SNP [dm6]	C	T	5.115e^-4	0.959	INTRON Gycbeta100B
2L	8994888	2L_8994888_SNP [dm3] 2L_8994888_SNP [dm6]	A	C	5.116e^-4	0.959	UTR_3_PRIME alien DOWNSTREAM alien INTRON CG17906	TF binding site mE1_TFBS_sens
3R	21538513	3R_21538513_SNP [dm3] 3R_25712791_SNP [dm6]	C	T	5.117e^-4	0.959	INTRON LpR2
2L	3632807	2L_3632807_SNP [dm3] 2L_3632807_SNP [dm6]	C	T	5.119e^-4	0.959	UPSTREAM for INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14817236	2R_14817236_SNP [dm3] 2R_18929731_SNP [dm6]	T	G	5.125e^-4	0.959	INTRON sano
3L	14538220	3L_14538220_DEL [dm3] 3L_14545120_DEL [dm6]	TCTTAATTATCTCGATCGCT...	T	5.135e^-4	0.959	INTRON CG9238	TF binding site BDTNP1_TFBS_z
2R	5584798	2R_5584798_SNP [dm3] 2R_9697293_SNP [dm6]	G	A	5.135e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	6433793	3L_6433793_DEL [dm3] 3L_6440693_DEL [dm6]	ATTAA	A	5.148e^-4	0.959	INTRON CG42747
X	13933813	X_13933813_SNP [dm3] X_14039780_SNP [dm6]	T	A	5.156e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8445779	X_8445779_SNP [dm3] X_8551746_SNP [dm6]	C	T	5.171e^-4	0.959	DOWNSTREAM Nrg INTRON Nrg
3R	26032186	3R_26032186_SNP [dm3] 3R_30206464_SNP [dm6]	T	A	5.171e^-4	0.959	UTR_3_PRIME RpS7 DOWNSTREAM RpS7 & 4 others	TF binding site mE1_TFBS_sens
3L	11335612	3L_11335612_SNP [dm3] 3L_11342512_SNP [dm6]	C	T	5.179e^-4	0.959	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3543155	X_3543155_SNP [dm3] X_3649122_SNP [dm6]	C	T	5.180e^-4	0.959	INTRON AstA-R1
3R	21901162	3R_21901162_SNP [dm3] 3R_26075440_SNP [dm6]	A	T	5.181e^-4	0.959	INTERGENIC
3L	8806804	3L_8806804_SNP [dm3] 3L_8813704_SNP [dm6]	T	G	5.185e^-4	0.959	INTERGENIC
3L	17383666	3L_17383666_SNP [dm3] 3L_17390566_SNP [dm6]	T	C	5.186e^-4	0.959	INTERGENIC
2R	9262130	2R_9262130_DEL [dm3] 2R_13374625_DEL [dm6]	AGG	A	5.193e^-4	0.959	INTERGENIC
2R	10816126	2R_10816126_SNP [dm3] 2R_14928621_SNP [dm6]	C	T	5.194e^-4	0.959	UPSTREAM CG10249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	7596316	2R_7596316_SNP [dm3] 2R_11708811_SNP [dm6]	C	T	5.201e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4576720	2L_4576720_SNP [dm3] 2L_4576720_SNP [dm6]	C	A	5.203e^-4	0.959	DOWNSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6792717	2R_6792717_DEL [dm3] 2R_10905212_DEL [dm6]	TGAT	T	5.203e^-4	0.959	INTRON CG12943
2L	6418543	2L_6418543_SNP [dm3] 2L_6418543_SNP [dm6]	G	A	5.204e^-4	0.959	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_chinmo
X	13664429	X_13664429_DEL [dm3] X_13770396_DEL [dm6]	AG	A	5.216e^-4	0.959	INTRON rdgB
2L	6445612	2L_6445612_SNP [dm3] 2L_6445612_SNP [dm6]	T	C	5.223e^-4	0.959	INTRON CG9527
X	14249195	X_14249195_SNP [dm3] X_14355162_SNP [dm6]	C	T	5.226e^-4	0.959	INTRON dpr8
3L	2623707	3L_2623707_SNP [dm3] 3L_2623707_SNP [dm6]	A	C	5.231e^-4	0.959	INTRON Pxn
2R	14837655	2R_14837655_SNP [dm3] 2R_18950150_SNP [dm6]	A	T	5.232e^-4	0.959	INTRON sano
2R	16510567	2R_16510567_SNP [dm3] 2R_20623062_SNP [dm6]	A	G	5.240e^-4	0.959	SYNONYMOUS_CODING CG11180 UPSTREAM CG16742	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7369714	3L_7369714_SNP [dm3] 3L_7376614_SNP [dm6]	G	T	5.243e^-4	0.959	INTRON SMSr
X	19238309	X_19238309_SNP [dm3] X_19344276_SNP [dm6]	C	T	5.252e^-4	0.959	INTRON nAChRalpha7

By genomic position
Variant impact
Gene name

mn_WakingActivity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results