DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.382e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2323 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2438965	X_2438965_SNP [dm3] X_2544932_SNP [dm6]	G	T	3.888e^-8	0.073	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
3L	9276637	3L_9276637_SNP [dm3] 3L_9283537_SNP [dm6]	C	T	3.421e^-7	0.244	INTRON GluRIB
2R	18594505	2R_18594505_SNP [dm3] 2R_22707000_SNP [dm6]	A	T	3.900e^-7	0.244	NON_SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
3L	10731932	3L_10731932_SNP [dm3] 3L_10738832_SNP [dm6]	T	A	5.220e^-7	0.245	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2438968	X_2438968_SNP [dm3] X_2544935_SNP [dm6]	T	C	7.437e^-7	0.279	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
3L	3694588	3L_3694588_SNP [dm3] 3L_3694588_SNP [dm6]	T	G	9.597e^-7	0.3	UPSTREAM CR43485 INTERGENIC
3L	6277117	3L_6277117_SNP [dm3] 3L_6284017_SNP [dm6]	G	T	1.893e^-6	0.447	INTERGENIC
X	2438967	X_2438967_SNP [dm3] X_2544934_SNP [dm6]	C	G	1.907e^-6	0.447	UPSTREAM mir-4955 INTRON trol	TF binding site BDTNP1_TFBS_dl
2R	9024221	2R_9024221_SNP [dm3] 2R_13136716_SNP [dm6]	A	G	2.166e^-6	0.451	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3L	6160501	3L_6160501_SNP [dm3] 3L_6167401_SNP [dm6]	C	G	2.848e^-6	0.534	UTR_3_PRIME CG10289
3L	9276382	3L_9276382_DEL [dm3] 3L_9283282_DEL [dm6]	AT	A	3.848e^-6	0.637	INTRON GluRIB
X	1683198	X_1683198_SNP [dm3] X_1789165_SNP [dm6]	C	T	4.214e^-6	0.637	UPSTREAM CG32806 & 1 other INTRON CG42666
3L	3694218	3L_3694218_SNP [dm3] 3L_3694218_SNP [dm6]	C	T	4.416e^-6	0.637	EXON CR43485
3R	6978641	3R_6978641_SNP [dm3] 3R_11152919_SNP [dm6]	C	A	5.203e^-6	0.697	NON_SYNONYMOUS_CODING Ugt86Di
2L	15217304	2L_15217304_SNP [dm3] 2L_15217304_SNP [dm6]	G	T	5.997e^-6	0.715	INTERGENIC
3R	6980342	3R_6980342_SNP [dm3] 3R_11154620_SNP [dm6]	C	T	6.737e^-6	0.715	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3L	7249866	3L_7249866_INS [dm3] 3L_7256766_INS [dm6]	T	TTCT	6.983e^-6	0.715	INTRON CG14830
3L	11526452	3L_11526452_SNP [dm3] 3L_11533352_SNP [dm6]	A	G	7.161e^-6	0.715	INTRON Mob2
3L	6160496	3L_6160496_SNP [dm3] 3L_6167396_SNP [dm6]	G	A	7.246e^-6	0.715	UTR_3_PRIME CG10289
3L	8832878	3L_8832878_SNP [dm3] 3L_8839778_SNP [dm6]	A	T	8.630e^-6	0.722	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6235066	3R_6235066_SNP [dm3] 3R_10409344_SNP [dm6]	G	T	8.648e^-6	0.722	SYNONYMOUS_CODING Irp-1B DOWNSTREAM mir-318	TF binding site mE1_TFBS_chinmo
3L	9052955	3L_9052955_SNP [dm3] 3L_9059855_SNP [dm6]	C	T	8.725e^-6	0.722	INTRON Argk
3R	6980322	3R_6980322_DEL [dm3] 3R_11154600_DEL [dm6]	GAAATTAAG	G	8.849e^-6	0.722	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3L	8797466	3L_8797466_SNP [dm3] 3L_8804366_SNP [dm6]	G	T	1.161e^-5	0.733	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
4	253863	4_253863_SNP [dm3] 4_233237_SNP [dm6]	G	A	1.270e^-5	0.733	INTRON CG1674
2R	13508942	2R_13508942_SNP [dm3] 2R_17621437_SNP [dm6]	G	T	1.312e^-5	0.733	INTRON CG10936
3R	6978096	3R_6978096_SNP [dm3] 3R_11152374_SNP [dm6]	A	G	1.323e^-5	0.733	SYNONYMOUS_CODING Ugt86Di
X	1682389	X_1682389_SNP [dm3] X_1788356_SNP [dm6]	C	T	1.347e^-5	0.733	DOWNSTREAM mir-981 & 1 other INTRON CG42666
X	1684349	X_1684349_SNP [dm3] X_1790316_SNP [dm6]	A	C	1.350e^-5	0.733	NON_SYNONYMOUS_CODING CG32806 INTRON CG42666
X	2365363	X_2365363_SNP [dm3] X_2471330_SNP [dm6]	A	C	1.376e^-5	0.733	INTRON trol
3L	8964159	3L_8964159_SNP [dm3] 3L_8971059_SNP [dm6]	G	T	1.381e^-5	0.733	DOWNSTREAM pix INTRON CG5026
3L	1294433	3L_1294433_SNP [dm3] 3L_1294433_SNP [dm6]	T	C	1.392e^-5	0.733	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
3R	23726020	3R_23726020_SNP [dm3] 3R_27900298_SNP [dm6]	G	A	1.421e^-5	0.733	INTRON CG34353
3L	5932222	3L_5932222_SNP [dm3] 3L_5939122_SNP [dm6]	G	A	1.425e^-5	0.733	INTRON CG33993
X	16668094	X_16668094_INS [dm3] X_16774061_INS [dm6]	T	TT	1.442e^-5	0.733	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16615175	X_16615175_SNP [dm3] X_16721142_SNP [dm6]	T	A	1.472e^-5	0.733	UPSTREAM CG32572 INTRON CG34325
X	1669183	X_1669183_DEL [dm3] X_1775150_DEL [dm6]	TACG	T	1.631e^-5	0.733	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	5332035	2R_5332035_SNP [dm3] 2R_9444530_SNP [dm6]	T	G	1.686e^-5	0.733	DOWNSTREAM CR45321 INTRON ced-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3254020	3L_3254020_SNP [dm3] 3L_3254020_SNP [dm6]	T	A	1.719e^-5	0.733	EXON CR43626
3L	9053026	3L_9053026_SNP [dm3] 3L_9059926_SNP [dm6]	T	A	1.773e^-5	0.733	INTRON Argk
2L	3710425	2L_3710425_SNP [dm3] 2L_3710425_SNP [dm6]	G	A	1.816e^-5	0.733	NON_SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10964278	3L_10964278_SNP [dm3] 3L_10971178_SNP [dm6]	C	A	1.832e^-5	0.733	INTERGENIC
2R	4050278	2R_4050278_SNP [dm3] 2R_8162773_SNP [dm6]	G	A	1.832e^-5	0.733	SYNONYMOUS_CODING RagC-D UPSTREAM Rs1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1669192	X_1669192_SNP [dm3] X_1775159_SNP [dm6]	C	A	1.872e^-5	0.733	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18597681	2R_18597681_SNP [dm3] 2R_22710176_SNP [dm6]	T	A	1.896e^-5	0.733	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
3R	6977640	3R_6977640_SNP [dm3] 3R_11151918_SNP [dm6]	G	A	1.901e^-5	0.733	UTR_3_PRIME Ugt86Di
3L	10732992	3L_10732992_SNP [dm3] 3L_10739892_SNP [dm6]	A	T	2.053e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	8964165	3L_8964165_SNP [dm3] 3L_8971065_SNP [dm6]	T	A	2.160e^-5	0.733	DOWNSTREAM pix INTRON CG5026
3L	11177497	3L_11177497_SNP [dm3] 3L_11184397_SNP [dm6]	G	C	2.175e^-5	0.733	START_GAINED GlcAT-P UTR_5_PRIME GlcAT-P
3L	6291184	3L_6291184_SNP [dm3] 3L_6298084_SNP [dm6]	A	C	2.266e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
X	1681033	X_1681033_SNP [dm3] X_1787000_SNP [dm6]	C	T	2.284e^-5	0.733	UTR_3_PRIME Adar INTRON CG42666
3L	14583429	3L_14583429_SNP [dm3] 3L_14590329_SNP [dm6]	C	T	2.390e^-5	0.733	INTRON HGTX
X	1926162	X_1926162_SNP [dm3] X_2032129_SNP [dm6]	C	T	2.407e^-5	0.733	INTRON Actn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	1665062	X_1665062_DEL [dm3] X_1771029_DEL [dm6]	CGCCCACTGCC...	C	2.457e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15937344	3L_15937344_SNP [dm3] 3L_15944244_SNP [dm6]	G	A	2.507e^-5	0.733	INTRON Pka-C3
3L	9031902	3L_9031902_SNP [dm3] 3L_9038802_SNP [dm6]	A	G	2.592e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10263655	2L_10263655_SNP [dm3] 2L_10263655_SNP [dm6]	G	T	2.597e^-5	0.733	UPSTREAM CG18619 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5331919	2R_5331919_SNP [dm3] 2R_9444414_SNP [dm6]	G	A	2.680e^-5	0.733	INTRON ced-6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19080490	X_19080490_SNP [dm3] X_19186457_SNP [dm6]	T	A	2.681e^-5	0.733	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10966557	3L_10966557_SNP [dm3] 3L_10973457_SNP [dm6]	C	T	2.682e^-5	0.733	UTR_3_PRIME CG14147
3R	488352	3R_488352_SNP [dm3] 3R_4662630_SNP [dm6]	G	A	2.731e^-5	0.733	INTRON CG43427	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	3694604	3L_3694604_SNP [dm3] 3L_3694604_SNP [dm6]	C	A	2.744e^-5	0.733	UPSTREAM CR43485 INTERGENIC
2L	15217351	2L_15217351_SNP [dm3] 2L_15217351_SNP [dm6]	T	C	2.831e^-5	0.733	INTERGENIC
3L	10966541	3L_10966541_SNP [dm3] 3L_10973441_SNP [dm6]	T	A	2.897e^-5	0.733	UTR_3_PRIME CG14147
3L	7248595	3L_7248595_SNP [dm3] 3L_7255495_SNP [dm6]	A	G	2.944e^-5	0.733	INTRON CG14830
3R	6980417	3R_6980417_SNP [dm3] 3R_11154695_SNP [dm6]	C	T	3.036e^-5	0.733	NON_SYNONYMOUS_CODING Ugt86Dc UPSTREAM Ugt86Di
3L	16790073	3L_16790073_SNP [dm3] 3L_16796973_SNP [dm6]	A	G	3.074e^-5	0.733	INTRON CG9674
X	10221415	X_10221415_SNP [dm3] X_10327382_SNP [dm6]	T	G	3.087e^-5	0.733	SYNONYMOUS_CODING CG2909	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9053062	3L_9053062_SNP [dm3] 3L_9059962_SNP [dm6]	G	A	3.088e^-5	0.733	INTRON Argk
3L	2005291	3L_2005291_SNP [dm3] 3L_2005291_SNP [dm6]	G	T	3.149e^-5	0.733	UTR_3_PRIME CG42841
2L	6423704	2L_6423704_SNP [dm3] 2L_6423704_SNP [dm6]	G	A	3.152e^-5	0.733	UPSTREAM Tig & 1 other INTERGENIC
2R	13510469	2R_13510469_SNP [dm3] 2R_17622964_SNP [dm6]	T	C	3.169e^-5	0.733	INTRON CG10936
3L	15565553	3L_15565553_SNP [dm3] 3L_15572453_SNP [dm6]	A	G	3.224e^-5	0.733	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6978282	3R_6978282_SNP [dm3] 3R_11152560_SNP [dm6]	T	C	3.244e^-5	0.733	SYNONYMOUS_CODING Ugt86Di
X	11730809	X_11730809_DEL [dm3] X_11836776_DEL [dm6]	AA	A	3.252e^-5	0.733	UTR_3_PRIME rudhira UPSTREAM CR43908 DOWNSTREAM CG15741
2R	19534961	2R_19534961_SNP [dm3] 2R_23647438_SNP [dm6]	T	G	3.323e^-5	0.733	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18593667	2R_18593667_SNP [dm3] 2R_22706162_SNP [dm6]	G	T	3.339e^-5	0.733	UPSTREAM Obp58d DOWNSTREAM Obp58b INTRON Obp58c	TF binding site mE1_TFBS_inv
2R	12549060	2R_12549060_SNP [dm3] 2R_16661555_SNP [dm6]	G	A	3.339e^-5	0.733	INTRON Picot
X	10127944	X_10127944_SNP [dm3] X_10233911_SNP [dm6]	T	C	3.427e^-5	0.733	UTR_3_PRIME Hk UPSTREAM Ipod DOWNSTREAM Hk
4	132000	4_132000_SNP [dm3] 4_111374_SNP [dm6]	G	A	3.442e^-5	0.733	UTR_3_PRIME pan
4	68001	4_68001_SNP [dm3] 4_47375_SNP [dm6]	G	C	3.467e^-5	0.733	DOWNSTREAM ci INTERGENIC	transposable element FlyBase
2R	12550564	2R_12550564_SNP [dm3] 2R_16663059_SNP [dm6]	A	T	3.493e^-5	0.733	INTRON Picot
3L	9032236	3L_9032236_SNP [dm3] 3L_9039136_SNP [dm6]	A	C	3.493e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14594201	3L_14594201_DEL [dm3] 3L_14601101_DEL [dm6]	TC	T	3.585e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17366157	2R_17366157_SNP [dm3] 2R_21478652_SNP [dm6]	A	T	3.652e^-5	0.733	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	10964287	3L_10964287_SNP [dm3] 3L_10971187_SNP [dm6]	C	T	3.678e^-5	0.733	INTERGENIC
2R	12701576	2R_12701576_SNP [dm3] 2R_16814071_SNP [dm6]	C	T	3.710e^-5	0.733	DOWNSTREAM CR44380 INTERGENIC
3L	9030702	3L_9030702_SNP [dm3] 3L_9037602_SNP [dm6]	T	G	3.739e^-5	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	6445657	2L_6445657_SNP [dm3] 2L_6445657_SNP [dm6]	G	A	3.767e^-5	0.733	SYNONYMOUS_CODING CG9527
3L	5864960	3L_5864960_SNP [dm3] 3L_5871860_SNP [dm6]	C	T	3.777e^-5	0.733	SYNONYMOUS_CODING CG5568
3L	6004191	3L_6004191_SNP [dm3] 3L_6011091_SNP [dm6]	C	T	3.828e^-5	0.733	UPSTREAM alphaKap4 INTRON PVRAP
2L	10398881	2L_10398881_INS [dm3] 2L_10398881_INS [dm6]	A	AGA	3.837e^-5	0.733	INTRON Cnot4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4413358	X_4413358_SNP [dm3] X_4519325_SNP [dm6]	G	T	3.978e^-5	0.733	INTRON CR32773
3L	3306760	3L_3306760_SNP [dm3] 3L_3306760_SNP [dm6]	C	T	3.993e^-5	0.733	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl
X	20775584	X_20775584_SNP [dm3] X_20904557_SNP [dm6]	C	T	4.125e^-5	0.733	INTRON shakB
3L	8832719	3L_8832719_SNP [dm3] 3L_8839619_SNP [dm6]	C	T	4.143e^-5	0.733	DOWNSTREAM CG32026 INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11176344	3L_11176344_SNP [dm3] 3L_11183244_SNP [dm6]	T	G	4.171e^-5	0.733	INTRON GlcAT-P
X	19028026	X_19028026_SNP [dm3] X_19133993_SNP [dm6]	T	C	4.227e^-5	0.733	DOWNSTREAM CR45711 INTERGENIC
2L	7775062	2L_7775062_SNP [dm3] 2L_7775062_SNP [dm6]	A	C	4.561e^-5	0.733	DOWNSTREAM CG7179 & 1 other INTERGENIC
3L	14594162	3L_14594162_SNP [dm3] 3L_14601062_SNP [dm6]	C	T	4.720e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.139e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.4908	0.0642

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1930 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	9764249	3R_9764249_SNP [dm3] 3R_13938527_SNP [dm6]	A	G	2.926e^-7	0.549	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	6797928	2R_6797928_SNP [dm3] 2R_10910423_SNP [dm6]	T	A	1.230e^-6	0.788	NON_SYNONYMOUS_CODING Obp47a
3L	3694588	3L_3694588_SNP [dm3] 3L_3694588_SNP [dm6]	T	G	1.463e^-6	0.788	UPSTREAM CR43485 INTERGENIC
2R	18753662	2R_18753662_SNP [dm3] 2R_22866139_SNP [dm6]	C	A	1.680e^-6	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3542789	X_3542789_SNP [dm3] X_3648756_SNP [dm6]	C	T	2.154e^-6	0.808	INTRON AstA-R1
X	8112007	X_8112007_SNP [dm3] X_8217974_SNP [dm6]	G	A	3.150e^-6	0.94	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	5778340	2L_5778340_SNP [dm3] 2L_5778340_SNP [dm6]	T	C	3.932e^-6	0.94	INTRON CG9171	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1182984	2L_1182984_SNP [dm3] 2L_1182984_SNP [dm6]	G	T	4.235e^-6	0.94	SYNONYMOUS_CODING CG5126 DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19888064	2R_19888064_SNP [dm3] 2R_24000541_SNP [dm6]	G	A	4.511e^-6	0.94	SPLICE_SITE_REGION Unc-89 SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1140510	2L_1140510_SNP [dm3] 2L_1140510_SNP [dm6]	A	T	5.369e^-6	0.959	UTR_3_PRIME CG4577
3L	3694218	3L_3694218_SNP [dm3] 3L_3694218_SNP [dm6]	C	T	6.290e^-6	0.959	EXON CR43485
2R	18617458	2R_18617458_SNP [dm3] 2R_22729953_SNP [dm6]	A	G	6.599e^-6	0.959	SYNONYMOUS_CODING jbug UPSTREAM jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2656258	2L_2656258_SNP [dm3] 2L_2656258_SNP [dm6]	G	T	7.020e^-6	0.959	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a & 1 other
2L	6328844	2L_6328844_SNP [dm3] 2L_6328844_SNP [dm6]	G	A	7.914e^-6	0.959	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
X	2871577	X_2871577_SNP [dm3] X_2977544_SNP [dm6]	T	A	1.080e^-5	0.959	INTRON kirre
2L	16448606	2L_16448606_SNP [dm3] 2L_16448606_SNP [dm6]	G	A	1.153e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
X	1683198	X_1683198_SNP [dm3] X_1789165_SNP [dm6]	C	T	1.161e^-5	0.959	UPSTREAM CG32806 & 1 other INTRON CG42666
X	4921109	X_4921109_SNP [dm3] X_5027076_SNP [dm6]	T	C	1.206e^-5	0.959	INTRON CR44833
3L	14533805	3L_14533805_SNP [dm3] 3L_14540705_SNP [dm6]	T	G	1.244e^-5	0.959	DOWNSTREAM CG9238 & 1 other INTERGENIC
X	13214476	X_13214476_DEL [dm3] X_13320443_DEL [dm6]	TATATTTTTCTAAAC...	T	1.249e^-5	0.959	UPSTREAM IP3K2 INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	9877064	3R_9877064_SNP [dm3] 3R_14051342_SNP [dm6]	G	T	1.265e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14787884	X_14787884_SNP [dm3] X_14893851_SNP [dm6]	T	C	1.269e^-5	0.959	INTRON Flo2 & 1 other
2R	6797934	2R_6797934_SNP [dm3] 2R_10910429_SNP [dm6]	A	T	1.278e^-5	0.959	NON_SYNONYMOUS_CODING Obp47a
X	18322813	X_18322813_SNP [dm3] X_18428780_SNP [dm6]	A	C	1.295e^-5	0.959	INTERGENIC
2L	10405275	2L_10405275_SNP [dm3] 2L_10405275_SNP [dm6]	T	A	1.481e^-5	0.959	UPSTREAM Ir31a & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25616054	3R_25616054_SNP [dm3] 3R_29790332_SNP [dm6]	A	G	1.481e^-5	0.959	SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
3R	19775495	3R_19775495_SNP [dm3] 3R_23949773_SNP [dm6]	C	G	1.505e^-5	0.959	INTERGENIC
X	8524587	X_8524587_SNP [dm3] X_8630554_SNP [dm6]	G	T	1.608e^-5	0.959	UTR_3_PRIME oc
2L	16448666	2L_16448666_SNP [dm3] 2L_16448666_SNP [dm6]	C	A	1.632e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	12248143	2L_12248143_SNP [dm3] 2L_12248143_SNP [dm6]	A	T	1.641e^-5	0.959	INTRON aret
2L	3931241	2L_3931241_SNP [dm3] 2L_3931241_SNP [dm6]	C	T	1.715e^-5	0.959	INTRON fred
2R	9905425	2R_9905425_SNP [dm3] 2R_14017920_SNP [dm6]	C	A	1.723e^-5	0.959	INTRON mam
X	12378342	X_12378342_SNP [dm3] X_12484309_SNP [dm6]	T	A	1.940e^-5	0.959	INTERGENIC
X	10199107	X_10199107_SNP [dm3] X_10305074_SNP [dm6]	T	A	1.946e^-5	0.959	INTRON alpha-Man-I
2L	9110426	2L_9110426_SNP [dm3] 2L_9110426_SNP [dm6]	A	G	2.136e^-5	0.959	INTERGENIC
3R	21901135	3R_21901135_SNP [dm3] 3R_26075413_SNP [dm6]	A	C	2.155e^-5	0.959	INTERGENIC
3R	21901144	3R_21901144_SNP [dm3] 3R_26075422_SNP [dm6]	G	A	2.155e^-5	0.959	INTERGENIC
3L	5905545	3L_5905545_SNP [dm3] 3L_5912445_SNP [dm6]	A	T	2.266e^-5	0.959	INTRON CG13288
2R	16423067	2R_16423067_SNP [dm3] 2R_20535562_SNP [dm6]	A	C	2.271e^-5	0.959	UTR_3_PRIME CG18067 DOWNSTREAM CG18067
3L	3696597	3L_3696597_SNP [dm3] 3L_3696597_SNP [dm6]	C	A	2.303e^-5	0.959	INTERGENIC
2R	19888080	2R_19888080_INS [dm3] 2R_24000557_INS [dm6]	C	CGGC	2.529e^-5	0.959	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12248153	2L_12248153_SNP [dm3] 2L_12248153_SNP [dm6]	T	G	2.606e^-5	0.959	INTRON aret
2L	16448571	2L_16448571_SNP [dm3] 2L_16448571_SNP [dm6]	A	G	2.612e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2R	6794401	2R_6794401_SNP [dm3] 2R_10906896_SNP [dm6]	C	T	2.640e^-5	0.959	INTERGENIC
3L	10978340	3L_10978340_SNP [dm3] 3L_10985240_SNP [dm6]	T	A	2.750e^-5	0.959	INTRON klu	TF binding site BDTNP1_TFBS_dl
2R	6795162	2R_6795162_SNP [dm3] 2R_10907657_SNP [dm6]	C	T	2.757e^-5	0.959	INTERGENIC
2R	9904777	2R_9904777_SNP [dm3] 2R_14017272_SNP [dm6]	C	T	2.783e^-5	0.959	INTRON mam
X	19080490	X_19080490_SNP [dm3] X_19186457_SNP [dm6]	T	A	2.797e^-5	0.959	INTRON CG33253	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16448581	2L_16448581_SNP [dm3] 2L_16448581_SNP [dm6]	T	A	2.891e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2R	17366157	2R_17366157_SNP [dm3] 2R_21478652_SNP [dm6]	A	T	2.894e^-5	0.959	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	20210236	3R_20210236_SNP [dm3] 3R_24384514_SNP [dm6]	A	G	2.966e^-5	0.959	SYNONYMOUS_CODING CG17780
2L	3186701	2L_3186701_SNP [dm3] 2L_3186701_SNP [dm6]	A	G	3.060e^-5	0.959	INTRON CG34393
2L	12136182	2L_12136182_SNP [dm3] 2L_12136182_SNP [dm6]	C	G	3.170e^-5	0.959	INTERGENIC
3L	18868551	3L_18868551_SNP [dm3] 3L_18875451_SNP [dm6]	C	T	3.289e^-5	0.959	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
2R	15832281	2R_15832281_SNP [dm3] 2R_19944776_SNP [dm6]	A	T	3.297e^-5	0.959	SYNONYMOUS_CODING CG43195 DOWNSTREAM CG42690 & 1 other INTRON CG43195
2L	10172322	2L_10172322_SNP [dm3] 2L_10172322_SNP [dm6]	G	T	3.436e^-5	0.959	UPSTREAM CG13137 INTRON CG44153
3R	25067542	3R_25067542_SNP [dm3] 3R_29241820_SNP [dm6]	G	A	3.531e^-5	0.959	SYNONYMOUS_CODING CG31445
2R	16134551	2R_16134551_SNP [dm3] 2R_20247046_SNP [dm6]	C	T	3.567e^-5	0.959	SYNONYMOUS_CODING ppk6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16134577	2R_16134577_SNP [dm3] 2R_20247072_SNP [dm6]	A	C	3.567e^-5	0.959	INTRON ppk6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9904509	2R_9904509_SNP [dm3] 2R_14017004_SNP [dm6]	C	T	3.660e^-5	0.959	INTRON mam
X	1681033	X_1681033_SNP [dm3] X_1787000_SNP [dm6]	C	T	3.717e^-5	0.959	UTR_3_PRIME Adar INTRON CG42666
2R	6737612	2R_6737612_SNP [dm3] 2R_10850107_SNP [dm6]	C	T	3.755e^-5	0.959	INTRON CG30015	TF binding site BDTNP1_TFBS_dl
X	3545242	X_3545242_INS [dm3] X_3651209_INS [dm6]	A	ATT	3.850e^-5	0.959	INTRON AstA-R1
X	3545244	X_3545244_SNP [dm3] X_3651211_SNP [dm6]	A	T	3.873e^-5	0.959	INTRON AstA-R1
3L	9298698	3L_9298698_SNP [dm3] 3L_9305598_SNP [dm6]	A	G	3.905e^-5	0.959	INTERGENIC
X	6310679	X_6310679_SNP [dm3] X_6416646_SNP [dm6]	A	C	3.917e^-5	0.959	INTERGENIC
2L	16448702	2L_16448702_SNP [dm3] 2L_16448702_SNP [dm6]	G	A	3.970e^-5	0.959	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	9667742	2L_9667742_SNP [dm3] 2L_9667742_SNP [dm6]	G	T	3.985e^-5	0.959	INTERGENIC
X	12378510	X_12378510_SNP [dm3] X_12484477_SNP [dm6]	C	G	4.160e^-5	0.959	INTERGENIC
3R	21537712	3R_21537712_SNP [dm3] 3R_25711990_SNP [dm6]	C	T	4.174e^-5	0.959	INTRON LpR2	TF binding site mE1_TFBS_HSA
2L	1180005	2L_1180005_SNP [dm3] 2L_1180005_SNP [dm6]	C	G	4.206e^-5	0.959	SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896
X	3544862	X_3544862_SNP [dm3] X_3650829_SNP [dm6]	A	C	4.298e^-5	0.959	INTRON AstA-R1
2R	16132604	2R_16132604_INS [dm3] 2R_20245099_INS [dm6]	C	CC	4.300e^-5	0.959	DOWNSTREAM ppk6 INTRON CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15468385	2L_15468385_SNP [dm3] 2L_15468385_SNP [dm6]	T	G	4.333e^-5	0.959	DOWNSTREAM CR45353 INTERGENIC
2L	3211196	2L_3211196_SNP [dm3] 2L_3211196_SNP [dm6]	C	T	4.485e^-5	0.959	DOWNSTREAM CR45336 INTERGENIC
3L	14600666	3L_14600666_SNP [dm3] 3L_14607566_SNP [dm6]	C	T	4.485e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14600659	3L_14600659_SNP [dm3] 3L_14607559_SNP [dm6]	A	G	4.496e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3694604	3L_3694604_SNP [dm3] 3L_3694604_SNP [dm6]	C	A	4.524e^-5	0.959	UPSTREAM CR43485 INTERGENIC
3L	16169544	3L_16169544_SNP [dm3] 3L_16176444_SNP [dm6]	T	C	4.541e^-5	0.959	UPSTREAM CR45754 DOWNSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10212289	3R_10212289_SNP [dm3] 3R_14386567_SNP [dm6]	T	G	4.565e^-5	0.959	INTERGENIC
X	2365363	X_2365363_SNP [dm3] X_2471330_SNP [dm6]	A	C	4.586e^-5	0.959	INTRON trol
2L	12136213	2L_12136213_SNP [dm3] 2L_12136213_SNP [dm6]	C	T	4.594e^-5	0.959	INTERGENIC
2R	17846600	2R_17846600_SNP [dm3] 2R_21959095_SNP [dm6]	G	A	4.646e^-5	0.959	INTERGENIC
3L	10063568	3L_10063568_SNP [dm3] 3L_10070468_SNP [dm6]	C	G	4.717e^-5	0.959	INTRON dpr6
2R	9162187	2R_9162187_SNP [dm3] 2R_13274682_SNP [dm6]	C	A	4.719e^-5	0.959	INTRON Dh31-R
3L	20142410	3L_20142410_SNP [dm3] 3L_20149310_SNP [dm6]	A	T	4.780e^-5	0.959	DOWNSTREAM CG42674 INTERGENIC
X	1679533	X_1679533_SNP [dm3] X_1785500_SNP [dm6]	G	A	4.958e^-5	0.959	UTR_3_PRIME Adar INTRON CG42666
2R	11450082	2R_11450082_SNP [dm3] 2R_15562577_SNP [dm6]	G	T	5.046e^-5	0.959	DOWNSTREAM CG8195 & 1 other INTERGENIC
3R	21898728	3R_21898728_SNP [dm3] 3R_26073006_SNP [dm6]	G	C	5.064e^-5	0.959	INTERGENIC
2R	3314614	2R_3314614_SNP [dm3] 2R_7427109_SNP [dm6]	A	C	5.095e^-5	0.959	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9667721	2L_9667721_SNP [dm3] 2L_9667721_SNP [dm6]	T	A	5.232e^-5	0.959	INTERGENIC
3R	23726020	3R_23726020_SNP [dm3] 3R_27900298_SNP [dm6]	G	A	5.271e^-5	0.959	INTRON CG34353
2L	6532788	2L_6532788_SNP [dm3] 2L_6532788_SNP [dm6]	C	G	5.298e^-5	0.959	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13241474	2R_13241474_SNP [dm3] 2R_17353969_SNP [dm6]	C	T	5.309e^-5	0.959	DOWNSTREAM mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl
2R	16134983	2R_16134983_SNP [dm3] 2R_20247478_SNP [dm6]	T	A	5.360e^-5	0.959	SYNONYMOUS_CODING ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
2R	18241583	2R_18241583_SNP [dm3] 2R_22354078_SNP [dm6]	T	A	5.417e^-5	0.959	INTRON Liprin-gamma
2L	1140456	2L_1140456_SNP [dm3] 2L_1140456_SNP [dm6]	C	T	5.452e^-5	0.959	UTR_3_PRIME CG4577
3R	21436553	3R_21436553_DEL [dm3] 3R_25610831_DEL [dm6]	TTGAGTCGATATT...	T	5.519e^-5	0.959	DOWNSTREAM Npl4 INTERGENIC
2R	18594505	2R_18594505_SNP [dm3] 2R_22707000_SNP [dm6]	A	T	5.530e^-5	0.959	NON_SYNONYMOUS_CODING Obp58d UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735
X	2385953	X_2385953_SNP [dm3] X_2491920_SNP [dm6]	A	C	5.633e^-5	0.959	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb

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By genomic position
Variant impact
Gene name

mn_WakingActivity phenotype

Phenotype distribution and association to known covariates

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GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results