DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.284e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.001654
In_3R_Mo	5.892e-05

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	7.7924	0.0052
In_2R_NS	11.341	0.0034
In_3R_Mo	14.5052	0.0007

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2535 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10231324	3L_10231324_SNP [dm3] 3L_10238224_SNP [dm6]	C	G	4.121e^-7	0.482	INTERGENIC
X	815927	X_815927_SNP [dm3] X_921894_SNP [dm6]	G	A	1.082e^-6	0.482	DOWNSTREAM CG3711 INTRON CG43867
X	814182	X_814182_SNP [dm3] X_920149_SNP [dm6]	C	A	1.379e^-6	0.482	INTRON CG43867
X	19027377	X_19027377_SNP [dm3] X_19133344_SNP [dm6]	T	C	1.923e^-6	0.482	EXON CR45711
3L	18152045	3L_18152045_SNP [dm3] 3L_18158945_SNP [dm6]	G	A	3.134e^-6	0.482	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4179438	2L_4179438_DEL [dm3] 2L_4179438_DEL [dm6]	TCAGAAATCTAT...	T	3.220e^-6	0.482	INTERGENIC
X	15855580	X_15855580_DEL [dm3] X_15961547_DEL [dm6]	TT	T	3.299e^-6	0.482	INTRON mmd
X	814562	X_814562_SNP [dm3] X_920529_SNP [dm6]	C	G	3.939e^-6	0.482	INTRON CG43867
2R	10581646	2R_10581646_SNP [dm3] 2R_14694141_SNP [dm6]	G	A	4.026e^-6	0.482	INTRON mspo
2R	10581370	2R_10581370_SNP [dm3] 2R_14693865_SNP [dm6]	A	G	4.080e^-6	0.482	INTRON mspo
3L	9168349	3L_9168349_SNP [dm3] 3L_9175249_SNP [dm6]	G	T	4.319e^-6	0.482	INTRON Rdl
3R	9119639	3R_9119639_SNP [dm3] 3R_13293917_SNP [dm6]	A	G	4.641e^-6	0.482	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4179481	2L_4179481_SNP [dm3] 2L_4179481_SNP [dm6]	A	C	4.691e^-6	0.482	INTERGENIC
X	8288747	X_8288747_SNP [dm3] X_8394714_SNP [dm6]	G	T	5.012e^-6	0.482	INTERGENIC
2R	10658041	2R_10658041_SNP [dm3] 2R_14770536_SNP [dm6]	T	C	5.130e^-6	0.482	UTR_5_PRIME CG42254 & 1 other UPSTREAM BEAF-32 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	6612632	2R_6612632_SNP [dm3] 2R_10725127_SNP [dm6]	A	G	5.150e^-6	0.482	UPSTREAM CG12309 INTRON Rab3
2L	14512846	2L_14512846_SNP [dm3] 2L_14512846_SNP [dm6]	C	T	5.232e^-6	0.482	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	23774318	3R_23774318_SNP [dm3] 3R_27948596_SNP [dm6]	A	G	5.441e^-6	0.482	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16467206	2R_16467206_SNP [dm3] 2R_20579701_SNP [dm6]	C	T	5.511e^-6	0.482	INTRON qsm
3R	24627745	3R_24627745_SNP [dm3] 3R_28802023_SNP [dm6]	T	C	5.588e^-6	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25851526	3R_25851526_INS [dm3] 3R_30025804_INS [dm6]	CT	TGTTTCATGTTCATGTTTC...	5.878e^-6	0.482	INTRON Axn
2R	10657466	2R_10657466_SNP [dm3] 2R_14769961_SNP [dm6]	G	A	5.898e^-6	0.482	SYNONYMOUS_CODING CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	10657782	2R_10657782_SNP [dm3] 2R_14770277_SNP [dm6]	T	C	6.019e^-6	0.482	START_GAINED CG42254 UTR_5_PRIME CG42254 UPSTREAM Spred & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	16534869	X_16534869_SNP [dm3] X_16640836_SNP [dm6]	C	A	6.681e^-6	0.482	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	10657481	2R_10657481_SNP [dm3] 2R_14769976_SNP [dm6]	C	T	6.791e^-6	0.482	STOP_GAINED CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	4179681	2L_4179681_SNP [dm3] 2L_4179681_SNP [dm6]	C	T	6.864e^-6	0.482	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17096312	2R_17096312_SNP [dm3] 2R_21208807_SNP [dm6]	T	C	7.251e^-6	0.482	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3124960	X_3124960_SNP [dm3] X_3230927_SNP [dm6]	C	T	7.731e^-6	0.482	INTRON dnc
2R	6358571	2R_6358571_SNP [dm3] 2R_10471066_SNP [dm6]	T	C	7.919e^-6	0.482	INTRON whd
2L	4179678	2L_4179678_SNP [dm3] 2L_4179678_SNP [dm6]	T	A	7.973e^-6	0.482	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8933777	2L_8933777_SNP [dm3] 2L_8933777_SNP [dm6]	C	T	8.910e^-6	0.482	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	8.969e^-6	0.482	INTRON Con
2R	10319775	2R_10319775_SNP [dm3] 2R_14432270_SNP [dm6]	G	T	1.047e^-5	0.482	UTR_5_PRIME phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15273591	X_15273591_SNP [dm3] X_15379558_SNP [dm6]	G	A	1.057e^-5	0.482	UPSTREAM acj6 DOWNSTREAM CG9164 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	6543399	X_6543399_SNP [dm3] X_6649366_SNP [dm6]	G	C	1.085e^-5	0.482	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8939703	3R_8939703_SNP [dm3] 3R_13113981_SNP [dm6]	T	G	1.100e^-5	0.482	INTRON timeout
2L	4179528	2L_4179528_SNP [dm3] 2L_4179528_SNP [dm6]	A	G	1.163e^-5	0.482	INTERGENIC
X	19879392	X_19879392_SNP [dm3] X_19985359_SNP [dm6]	A	T	1.173e^-5	0.482	INTERGENIC
X	16885015	X_16885015_SNP [dm3] X_16990982_SNP [dm6]	A	C	1.185e^-5	0.482	INTRON CG45002	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16074725	2R_16074725_SNP [dm3] 2R_20187220_SNP [dm6]	A	T	1.193e^-5	0.482	INTERGENIC
3R	9129506	3R_9129506_SNP [dm3] 3R_13303784_SNP [dm6]	G	T	1.198e^-5	0.482	UTR_3_PRIME CG43208 UPSTREAM CG32473 INTRON CG32473
3R	23648184	3R_23648184_SNP [dm3] 3R_27822462_SNP [dm6]	C	T	1.214e^-5	0.482	INTRON CG34353
3R	22130832	3R_22130832_SNP [dm3] 3R_26305110_SNP [dm6]	A	G	1.253e^-5	0.482	INTERGENIC
3R	9119626	3R_9119626_SNP [dm3] 3R_13293904_SNP [dm6]	T	C	1.258e^-5	0.482	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	796029	X_796029_SNP [dm3] X_901996_SNP [dm6]	C	T	1.286e^-5	0.482	INTRON CG43867	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	796896	X_796896_SNP [dm3] X_902863_SNP [dm6]	G	A	1.286e^-5	0.482	INTRON CG43867
X	796932	X_796932_SNP [dm3] X_902899_SNP [dm6]	A	G	1.286e^-5	0.482	INTRON CG43867	TF binding site mE1_TFBS_chinmo
X	808870	X_808870_SNP [dm3] X_914837_SNP [dm6]	C	G	1.286e^-5	0.482	INTRON CG43867	TF binding site mE1_TFBS_inv
X	809986	X_809986_SNP [dm3] X_915953_SNP [dm6]	T	A	1.286e^-5	0.482	INTRON CG43867
X	811950	X_811950_SNP [dm3] X_917917_SNP [dm6]	T	G	1.286e^-5	0.482	INTRON CG43867
X	796897	X_796897_SNP [dm3] X_902864_SNP [dm6]	G	A	1.324e^-5	0.487	INTRON CG43867
2R	8587753	2R_8587753_SNP [dm3] 2R_12700248_SNP [dm6]	A	C	1.413e^-5	0.489	UTR_5_PRIME wuc INTRON wuc
2R	16454714	2R_16454714_SNP [dm3] 2R_20567209_SNP [dm6]	C	A	1.423e^-5	0.489	INTRON qsm
X	6543405	X_6543405_SNP [dm3] X_6649372_SNP [dm6]	T	C	1.468e^-5	0.489	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15855575	X_15855575_SNP [dm3] X_15961542_SNP [dm6]	T	A	1.477e^-5	0.489	INTRON mmd
2L	8443407	2L_8443407_SNP [dm3] 2L_8443407_SNP [dm6]	C	T	1.479e^-5	0.489	SYNONYMOUS_CODING CG31897
2L	8189852	2L_8189852_SNP [dm3] 2L_8189852_SNP [dm6]	T	A	1.485e^-5	0.489	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2L	8193620	2L_8193620_SNP [dm3] 2L_8193620_SNP [dm6]	A	G	1.636e^-5	0.503	UTR_3_PRIME CG8475 UPSTREAM CR44116 INTRON CG8475
3R	23774365	3R_23774365_SNP [dm3] 3R_27948643_SNP [dm6]	C	T	1.650e^-5	0.503	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	10508253	3R_10508253_SNP [dm3] 3R_14682531_SNP [dm6]	C	G	1.660e^-5	0.503	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9863849	3R_9863849_SNP [dm3] 3R_14038127_SNP [dm6]	G	A	1.673e^-5	0.503	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8085423	3L_8085423_INS [dm3] 3L_8092323_INS [dm6]	C	CGC	1.705e^-5	0.503	UPSTREAM CG7565 INTRON Ect4	TF binding site mE1_TFBS_HSA
3R	24487394	3R_24487394_SNP [dm3] 3R_28661672_SNP [dm6]	G	A	1.842e^-5	0.503	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18096371	X_18096371_SNP [dm3] X_18202338_SNP [dm6]	C	A	1.844e^-5	0.503	UTR_3_PRIME Frq2
2L	8189847	2L_8189847_SNP [dm3] 2L_8189847_SNP [dm6]	C	T	1.863e^-5	0.503	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2L	8190071	2L_8190071_SNP [dm3] 2L_8190071_SNP [dm6]	T	C	1.911e^-5	0.503	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2R	11731192	2R_11731192_SNP [dm3] 2R_15843687_SNP [dm6]	G	A	1.933e^-5	0.503	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16467596	2R_16467596_SNP [dm3] 2R_20580091_SNP [dm6]	C	A	1.945e^-5	0.503	INTRON qsm
3R	23647093	3R_23647093_SNP [dm3] 3R_27821371_SNP [dm6]	T	C	1.946e^-5	0.503	INTRON CG34353
3R	24477174	3R_24477174_SNP [dm3] 3R_28651452_SNP [dm6]	T	A	1.996e^-5	0.503	UPSTREAM CG31050 INTERGENIC
2R	16390280	2R_16390280_SNP [dm3] 2R_20502775_SNP [dm6]	A	G	2.075e^-5	0.503	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
3R	23654242	3R_23654242_SNP [dm3] 3R_27828520_SNP [dm6]	G	A	2.095e^-5	0.503	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13313780	X_13313780_SNP [dm3] X_13419747_SNP [dm6]	G	T	2.108e^-5	0.503	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16074744	2R_16074744_SNP [dm3] 2R_20187239_SNP [dm6]	A	G	2.127e^-5	0.503	INTERGENIC
2R	15479544	2R_15479544_SNP [dm3] 2R_19592039_SNP [dm6]	G	T	2.190e^-5	0.503	INTRON sm
2L	14512847	2L_14512847_SNP [dm3] 2L_14512847_SNP [dm6]	A	G	2.218e^-5	0.503	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	14658398	3L_14658398_SNP [dm3] 3L_14665298_SNP [dm6]	T	G	2.247e^-5	0.503	INTRON dlp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16493515	3L_16493515_DEL [dm3] 3L_16500415_DEL [dm6]	ACGGAGCTA	A	2.304e^-5	0.503	UTR_3_PRIME st INTRON CG43373
3L	5914738	3L_5914738_SNP [dm3] 3L_5921638_SNP [dm6]	C	A	2.312e^-5	0.503	UPSTREAM CG32407 & 1 other INTERGENIC
3L	10581692	3L_10581692_SNP [dm3] 3L_10588592_SNP [dm6]	T	A	2.350e^-5	0.503	INTRON A2bp1
2L	18908704	2L_18908704_SNP [dm3] 2L_18908704_SNP [dm6]	T	A	2.358e^-5	0.503	INTERGENIC
3R	23646752	3R_23646752_SNP [dm3] 3R_27821030_SNP [dm6]	G	T	2.359e^-5	0.503	INTRON CG34353
3R	19365138	3R_19365138_SNP [dm3] 3R_23539416_SNP [dm6]	T	C	2.365e^-5	0.503	UPSTREAM CG10168 INTERGENIC
2R	6612721	2R_6612721_SNP [dm3] 2R_10725216_SNP [dm6]	T	A	2.444e^-5	0.503	UPSTREAM CG12309 INTRON Rab3
X	18096231	X_18096231_SNP [dm3] X_18202198_SNP [dm6]	A	G	2.474e^-5	0.503	UTR_3_PRIME Frq2
3R	6068420	3R_6068420_SNP [dm3] 3R_10242698_SNP [dm6]	C	G	2.495e^-5	0.503	NON_SYNONYMOUS_CODING CG42795
3R	24477171	3R_24477171_DEL [dm3] 3R_28651449_DEL [dm6]	AA	A	2.506e^-5	0.503	UPSTREAM CG31050 INTERGENIC
3R	9729061	3R_9729061_SNP [dm3] 3R_13903339_SNP [dm6]	T	A	2.511e^-5	0.503	INTRON ems	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2584917	X_2584917_SNP [dm3] X_2690884_SNP [dm6]	A	C	2.515e^-5	0.503	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
X	2584890	X_2584890_SNP [dm3] X_2690857_SNP [dm6]	C	T	2.516e^-5	0.503	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
2R	6795597	2R_6795597_SNP [dm3] 2R_10908092_SNP [dm6]	T	C	2.516e^-5	0.503	INTERGENIC
2R	17096310	2R_17096310_SNP [dm3] 2R_21208805_SNP [dm6]	C	A	2.521e^-5	0.503	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14618686	2R_14618686_SNP [dm3] 2R_18731181_SNP [dm6]	A	T	2.529e^-5	0.503	UPSTREAM List INTRON Hs3st-A
2R	19281256	2R_19281256_SNP [dm3] 2R_23393733_SNP [dm6]	A	G	2.534e^-5	0.503	INTRON CG3530	TF binding site mE1_TFBS_chinmo
3L	22867838	3L_22867838_SNP [dm3] 3L_22874738_SNP [dm6]	G	A	2.546e^-5	0.503	INTRON Chro
X	475482	X_475482_SNP [dm3] X_581449_SNP [dm6]	G	A	2.593e^-5	0.507	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5914667	3L_5914667_SNP [dm3] 3L_5921567_SNP [dm6]	T	A	2.638e^-5	0.509	UPSTREAM CG32407 & 1 other INTERGENIC
2L	8189817	2L_8189817_SNP [dm3] 2L_8189817_SNP [dm6]	G	A	2.657e^-5	0.509	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
X	797093	X_797093_SNP [dm3] X_903060_SNP [dm6]	A	C	2.697e^-5	0.511	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	6600983	2R_6600983_SNP [dm3] 2R_10713478_SNP [dm6]	C	A	2.777e^-5	0.512	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9407727	3L_9407727_SNP [dm3] 3L_9414627_SNP [dm6]	T	C	2.798e^-5	0.512	SYNONYMOUS_CODING CG3967 DOWNSTREAM CG3689 & 1 other
3L	16765876	3L_16765876_SNP [dm3] 3L_16772776_SNP [dm6]	G	T	2.801e^-5	0.512	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
X	797074	X_797074_SNP [dm3] X_903041_SNP [dm6]	C	T	2.851e^-5	0.512	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	2.867e^-5	0.512	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	22489003	3L_22489003_SNP [dm3] 3L_22495903_SNP [dm6]	A	T	2.890e^-5	0.512	DOWNSTREAM CR45430 INTERGENIC
2L	9687822	2L_9687822_SNP [dm3] 2L_9687822_SNP [dm6]	A	T	2.923e^-5	0.512	INTRON Pka-C1
3R	23654546	3R_23654546_SNP [dm3] 3R_27828824_SNP [dm6]	G	C	2.924e^-5	0.512	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3L	4689083	3L_4689083_SNP [dm3] 3L_4689083_SNP [dm6]	T	C	2.955e^-5	0.513	NON_SYNONYMOUS_CODING CG18418 UPSTREAM CG7514
X	3631135	X_3631135_SNP [dm3] X_3737102_SNP [dm6]	C	T	3.043e^-5	0.524	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9863847	3R_9863847_SNP [dm3] 3R_14038125_SNP [dm6]	G	A	3.073e^-5	0.524	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17605709	3L_17605709_SNP [dm3] 3L_17612609_SNP [dm6]	A	C	3.141e^-5	0.526	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	19281306	2R_19281306_SNP [dm3] 2R_23393783_SNP [dm6]	A	T	3.156e^-5	0.526	INTRON CG3530	TF binding site mE1_TFBS_chinmo
3L	15769432	3L_15769432_SNP [dm3] 3L_15776332_SNP [dm6]	A	T	3.167e^-5	0.526	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7919206	2L_7919206_SNP [dm3] 2L_7919206_SNP [dm6]	C	A	3.246e^-5	0.526	INTRON Snoo
X	11108025	X_11108025_SNP [dm3] X_11213992_SNP [dm6]	T	A	3.261e^-5	0.526	INTERGENIC
3R	9717365	3R_9717365_SNP [dm3] 3R_13891643_SNP [dm6]	G	T	3.297e^-5	0.526	INTERGENIC
X	16884680	X_16884680_SNP [dm3] X_16990647_SNP [dm6]	G	A	3.297e^-5	0.526	INTRON CG45002	TF binding site BDTNP1_TFBS_hb
3R	23646457	3R_23646457_SNP [dm3] 3R_27820735_SNP [dm6]	T	C	3.310e^-5	0.526	INTRON CG34353
X	797102	X_797102_SNP [dm3] X_903069_SNP [dm6]	G	C	3.349e^-5	0.528	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2L	4166990	2L_4166990_SNP [dm3] 2L_4166990_SNP [dm6]	G	A	3.417e^-5	0.534	UPSTREAM Or24a INTERGENIC
2L	11934259	2L_11934259_SNP [dm3] 2L_11934259_SNP [dm6]	T	A	3.457e^-5	0.536	UPSTREAM Or33a INTERGENIC
3L	12597076	3L_12597076_SNP [dm3] 3L_12603976_SNP [dm6]	T	C	3.517e^-5	0.537	INTERGENIC
2R	3317531	2R_3317531_SNP [dm3] 2R_7430026_SNP [dm6]	G	C	3.520e^-5	0.537	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
2L	12556584	2L_12556584_SNP [dm3] 2L_12556584_SNP [dm6]	A	G	3.595e^-5	0.544	INTERGENIC
X	10416486	X_10416486_SNP [dm3] X_10522453_SNP [dm6]	G	A	3.653e^-5	0.548	INTRON spri
3R	24627818	3R_24627818_DEL [dm3] 3R_28802096_DEL [dm6]	AGGATATTTGAAAAGGATAC...	A	3.806e^-5	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12578139	X_12578139_SNP [dm3] X_12684106_SNP [dm6]	A	T	3.853e^-5	0.569	DOWNSTREAM Smr INTERGENIC
X	6195047	X_6195047_SNP [dm3] X_6301014_SNP [dm6]	T	G	3.893e^-5	0.57	INTRON CG12219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	6994457	2R_6994457_SNP [dm3] 2R_11106952_SNP [dm6]	C	T	3.934e^-5	0.572	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2585058	X_2585058_SNP [dm3] X_2691025_SNP [dm6]	G	T	4.088e^-5	0.59	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3L	12609594	3L_12609594_SNP [dm3] 3L_12616494_SNP [dm6]	T	C	4.149e^-5	0.59	INTRON caup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	5914586	3L_5914586_DEL [dm3] 3L_5921486_DEL [dm6]	ACAACA	A	4.154e^-5	0.59	UPSTREAM CG32407 & 1 other INTERGENIC
X	6888729	X_6888729_SNP [dm3] X_6994696_SNP [dm6]	T	A	4.183e^-5	0.59	INTRON Inx7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2R	4402327	2R_4402327_SNP [dm3] 2R_8514822_SNP [dm6]	A	C	4.472e^-5	0.603	INTRON mtt
X	16535044	X_16535044_SNP [dm3] X_16641011_SNP [dm6]	A	G	4.498e^-5	0.603	START_GAINED mthl1 UTR_5_PRIME mthl1 UPSTREAM SmG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26499678	3R_26499678_SNP [dm3] 3R_30673956_SNP [dm6]	G	A	4.512e^-5	0.603	INTERGENIC
3R	23546594	3R_23546594_SNP [dm3] 3R_27720872_SNP [dm6]	T	C	4.533e^-5	0.603	INTERGENIC
3L	1977838	3L_1977838_SNP [dm3] 3L_1977838_SNP [dm6]	G	C	4.562e^-5	0.603	INTERGENIC
2R	10216123	2R_10216123_SNP [dm3] 2R_14328618_SNP [dm6]	T	C	4.662e^-5	0.603	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4016625	3L_4016625_SNP [dm3] 3L_4016625_SNP [dm6]	A	C	4.665e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	22854871	3L_22854871_SNP [dm3] 3L_22861771_SNP [dm6]	C	G	4.671e^-5	0.603	DOWNSTREAM CG13239 INTERGENIC
2R	6798192	2R_6798192_SNP [dm3] 2R_10910687_SNP [dm6]	C	T	4.697e^-5	0.603	DOWNSTREAM Obp47a INTERGENIC
3L	18150768	3L_18150768_SNP [dm3] 3L_18157668_SNP [dm6]	C	T	4.711e^-5	0.603	INTRON CG13699
3L	10690419	3L_10690419_SNP [dm3] 3L_10697319_SNP [dm6]	T	C	4.798e^-5	0.603	UPSTREAM NijA INTERGENIC
X	16654580	X_16654580_SNP [dm3] X_16760547_SNP [dm6]	G	A	4.807e^-5	0.603	INTRON if	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4336548	3L_4336548_SNP [dm3] 3L_4336548_SNP [dm6]	C	T	4.850e^-5	0.603	INTRON Cip4
X	3412652	X_3412652_SNP [dm3] X_3518619_SNP [dm6]	C	A	4.871e^-5	0.603	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	10951396	2R_10951396_SNP [dm3] 2R_15063891_SNP [dm6]	A	C	4.890e^-5	0.603	INTERGENIC
3L	17606188	3L_17606188_SNP [dm3] 3L_17613088_SNP [dm6]	T	A	4.893e^-5	0.603	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4042803	2L_4042803_SNP [dm3] 2L_4042803_SNP [dm6]	C	T	4.897e^-5	0.603	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10508273	3R_10508273_SNP [dm3] 3R_14682551_SNP [dm6]	A	T	4.972e^-5	0.603	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24627601	3R_24627601_SNP [dm3] 3R_28801879_SNP [dm6]	C	T	4.984e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10023299	2L_10023299_SNP [dm3] 2L_10023299_SNP [dm6]	T	C	4.997e^-5	0.603	INTERGENIC
3L	4952446	3L_4952446_SNP [dm3] 3L_4952446_SNP [dm6]	G	A	5.025e^-5	0.603	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12906144	X_12906144_DEL [dm3] X_13012111_DEL [dm6]	GTGTGTGTGTGTGTG...	G	5.074e^-5	0.603	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10567345	3L_10567345_SNP [dm3] 3L_10574245_SNP [dm6]	A	T	5.078e^-5	0.603	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna
3L	5331389	3L_5331389_SNP [dm3] 3L_5338289_SNP [dm6]	A	T	5.087e^-5	0.603	INTERGENIC
3L	22818689	3L_22818689_SNP [dm3] 3L_22825589_SNP [dm6]	G	A	5.099e^-5	0.603	UPSTREAM jim INTRON jim	TF binding site mE1_TFBS_Trl
3L	8811243	3L_8811243_SNP [dm3] 3L_8818143_SNP [dm6]	G	A	5.199e^-5	0.603	INTERGENIC
2L	7333347	2L_7333347_SNP [dm3] 2L_7333347_SNP [dm6]	T	A	5.219e^-5	0.603	UPSTREAM Wnt6 INTERGENIC
3L	13002659	3L_13002659_SNP [dm3] 3L_13009559_SNP [dm6]	T	C	5.255e^-5	0.603	NON_SYNONYMOUS_CODING CG11261 DOWNSTREAM CG14117
2R	16367296	2R_16367296_SNP [dm3] 2R_20479791_SNP [dm6]	A	G	5.294e^-5	0.603	DOWNSTREAM CG12484 INTERGENIC
2R	1995839	2R_1995839_SNP [dm3] 2R_6108334_SNP [dm6]	C	T	5.300e^-5	0.603	INTRON EcR
X	15855512	X_15855512_SNP [dm3] X_15961479_SNP [dm6]	C	T	5.304e^-5	0.603	INTRON mmd
3L	4943538	3L_4943538_SNP [dm3] 3L_4943538_SNP [dm6]	G	A	5.345e^-5	0.603	INTRON Con
2L	720180	2L_720180_SNP [dm3] 2L_720180_SNP [dm6]	C	G	5.349e^-5	0.603	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8194726	2L_8194726_SNP [dm3] 2L_8194726_SNP [dm6]	A	G	5.430e^-5	0.603	UTR_3_PRIME CG8475 INTRON CG8475 EXON CR44116
2R	9148755	2R_9148755_SNP [dm3] 2R_13261250_SNP [dm6]	T	A	5.465e^-5	0.603	INTRON CG42319
3R	23654908	3R_23654908_SNP [dm3] 3R_27829186_SNP [dm6]	C	T	5.473e^-5	0.603	INTRON CG34353
3R	23654911	3R_23654911_SNP [dm3] 3R_27829189_SNP [dm6]	T	C	5.473e^-5	0.603	INTRON CG34353
3R	9222961	3R_9222961_DEL [dm3] 3R_13397239_DEL [dm6]	CC	C	5.617e^-5	0.603	UPSTREAM CG14377 & 1 other INTERGENIC
2R	12521556	2R_12521556_SNP [dm3] 2R_16634051_SNP [dm6]	T	C	5.643e^-5	0.603	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10536901	2R_10536901_SNP [dm3] 2R_14649396_SNP [dm6]	A	G	5.692e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10392184	3R_10392184_SNP [dm3] 3R_14566462_SNP [dm6]	A	G	5.725e^-5	0.603	NON_SYNONYMOUS_CODING CG14852 UTR_3_PRIME CG31313 DOWNSTREAM CG31313
2R	3317532	2R_3317532_SNP [dm3] 2R_7430027_SNP [dm6]	G	C	5.741e^-5	0.603	UPSTREAM CR44203 INTRON so	TF binding site mE1_TFBS_HSA
X	7323204	X_7323204_SNP [dm3] X_7429171_SNP [dm6]	G	T	5.819e^-5	0.603	INTERGENIC
3L	10456415	3L_10456415_SNP [dm3] 3L_10463315_SNP [dm6]	A	G	5.826e^-5	0.603	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12621568	3L_12621568_SNP [dm3] 3L_12628468_SNP [dm6]	T	G	5.848e^-5	0.603	INTRON CR32111	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15769736	3L_15769736_SNP [dm3] 3L_15776636_SNP [dm6]	G	T	5.863e^-5	0.603	INTERGENIC
X	16347729	X_16347729_SNP [dm3] X_16453696_SNP [dm6]	G	C	5.871e^-5	0.603	UTR_3_PRIME Rbp2 DOWNSTREAM Rbp2
2R	7066704	2R_7066704_SNP [dm3] 2R_11179199_SNP [dm6]	A	G	5.928e^-5	0.603	INTRON shn	TF binding site mE1_TFBS_inv
3R	23687423	3R_23687423_SNP [dm3] 3R_27861701_SNP [dm6]	C	G	5.936e^-5	0.603	INTRON CG34353
X	12241664	X_12241664_SNP [dm3] X_12347631_SNP [dm6]	A	G	5.950e^-5	0.603	INTERGENIC
X	18096260	X_18096260_SNP [dm3] X_18202227_SNP [dm6]	A	T	5.990e^-5	0.603	UTR_3_PRIME Frq2
3L	10031522	3L_10031522_DEL [dm3] 3L_10038422_DEL [dm6]	AGA	A	6.040e^-5	0.603	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7804298	2R_7804298_SNP [dm3] 2R_11916793_SNP [dm6]	T	G	6.057e^-5	0.603	INTERGENIC
2L	7333254	2L_7333254_SNP [dm3] 2L_7333254_SNP [dm6]	T	G	6.067e^-5	0.603	UPSTREAM Wnt6 INTERGENIC
2R	18510058	2R_18510058_INS [dm3] 2R_22622553_INS [dm6]	A	ATATTCTTTA	6.079e^-5	0.603	INTRON CG33143
2L	11198237	2L_11198237_SNP [dm3] 2L_11198237_SNP [dm6]	A	G	6.129e^-5	0.603	INTRON Ca-beta
3R	23962420	3R_23962420_SNP [dm3] 3R_28136698_SNP [dm6]	C	T	6.141e^-5	0.603	INTERGENIC
3L	2315161	3L_2315161_SNP [dm3] 3L_2315161_SNP [dm6]	G	A	6.159e^-5	0.603	INTERGENIC
2R	6986862	2R_6986862_SNP [dm3] 2R_11099357_SNP [dm6]	T	C	6.169e^-5	0.603	INTRON luna
3L	8782413	3L_8782413_SNP [dm3] 3L_8789313_SNP [dm6]	T	C	6.306e^-5	0.603	SPLICE_SITE_REGION Fhos UPSTREAM CG5804 INTRON Fhos
2R	15193067	2R_15193067_SNP [dm3] 2R_19305562_SNP [dm6]	G	C	6.378e^-5	0.603	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	4690201	3L_4690201_SNP [dm3] 3L_4690201_SNP [dm6]	G	A	6.433e^-5	0.603	UPSTREAM CG18418 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16366462	2R_16366462_SNP [dm3] 2R_20478957_SNP [dm6]	G	A	6.538e^-5	0.603	DOWNSTREAM CG12484 INTERGENIC
3L	10581603	3L_10581603_SNP [dm3] 3L_10588503_SNP [dm6]	A	C	6.618e^-5	0.603	INTRON A2bp1
X	12157673	X_12157673_SNP [dm3] X_12263640_SNP [dm6]	A	C	6.632e^-5	0.603	INTRON Ten-a
X	7747900	X_7747900_SNP [dm3] X_7853867_SNP [dm6]	G	C	6.636e^-5	0.603	SYNONYMOUS_CODING CG10920
2L	11934263	2L_11934263_SNP [dm3] 2L_11934263_SNP [dm6]	T	A	6.667e^-5	0.603	UPSTREAM Or33a INTERGENIC
3L	3547093	3L_3547093_INS [dm3] 3L_3547093_INS [dm6]	C	CTGTCTCTC	6.678e^-5	0.603	INTRON Eip63E
X	20774248	X_20774248_SNP [dm3] X_20903221_SNP [dm6]	T	C	6.701e^-5	0.603	INTRON shakB
2R	10527693	2R_10527693_SNP [dm3] 2R_14640188_SNP [dm6]	T	C	6.719e^-5	0.603	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17908516	X_17908516_SNP [dm3] X_18014483_SNP [dm6]	G	A	6.721e^-5	0.603	SPLICE_SITE_REGION Sh UTR_5_PRIME Sh INTRON Sh
2R	10527990	2R_10527990_SNP [dm3] 2R_14640485_SNP [dm6]	G	T	6.770e^-5	0.603	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18330986	2R_18330986_SNP [dm3] 2R_22443481_SNP [dm6]	G	T	6.805e^-5	0.603	INTERGENIC
3R	8379920	3R_8379920_SNP [dm3] 3R_12554198_SNP [dm6]	T	C	6.808e^-5	0.603	INTRON Octbeta2R
3R	26943120	3R_26943120_SNP [dm3] 3R_31117398_SNP [dm6]	T	G	6.817e^-5	0.603	INTERGENIC
3L	5914692	3L_5914692_SNP [dm3] 3L_5921592_SNP [dm6]	T	C	6.825e^-5	0.603	UPSTREAM CG32407 & 1 other INTERGENIC
3L	4016638	3L_4016638_SNP [dm3] 3L_4016638_SNP [dm6]	T	C	6.855e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	14281170	2R_14281170_SNP [dm3] 2R_18393665_SNP [dm6]	A	T	6.860e^-5	0.603	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10657365	2R_10657365_SNP [dm3] 2R_14769860_SNP [dm6]	A	T	6.975e^-5	0.603	NON_SYNONYMOUS_CODING CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	9148753	2R_9148753_SNP [dm3] 2R_13261248_SNP [dm6]	G	A	7.012e^-5	0.603	INTRON CG42319
2R	10951405	2R_10951405_SNP [dm3] 2R_15063900_SNP [dm6]	A	G	7.050e^-5	0.603	INTERGENIC
2R	10951419	2R_10951419_SNP [dm3] 2R_15063914_SNP [dm6]	G	C	7.050e^-5	0.603	INTERGENIC
2R	6722928	2R_6722928_SNP [dm3] 2R_10835423_SNP [dm6]	A	G	7.051e^-5	0.603	INTRON CG12344	TF binding site BDTNP1_TFBS_twi
3L	2536836	3L_2536836_SNP [dm3] 3L_2536836_SNP [dm6]	G	A	7.091e^-5	0.603	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
3R	26801426	3R_26801426_SNP [dm3] 3R_30975704_SNP [dm6]	C	T	7.108e^-5	0.603	INTRON 5-HT7
2L	15304987	2L_15304987_SNP [dm3] 2L_15304987_SNP [dm6]	A	G	7.115e^-5	0.603	INTERGENIC
3R	14027591	3R_14027591_SNP [dm3] 3R_18201869_SNP [dm6]	C	T	7.138e^-5	0.603	INTRON CG7985
3R	24307024	3R_24307024_SNP [dm3] 3R_28481302_SNP [dm6]	C	T	7.147e^-5	0.603	INTERGENIC
2R	6797934	2R_6797934_SNP [dm3] 2R_10910429_SNP [dm6]	A	T	7.201e^-5	0.603	NON_SYNONYMOUS_CODING Obp47a
2L	8933754	2L_8933754_SNP [dm3] 2L_8933754_SNP [dm6]	G	A	7.248e^-5	0.603	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
2R	16367270	2R_16367270_SNP [dm3] 2R_20479765_SNP [dm6]	A	G	7.283e^-5	0.603	DOWNSTREAM CG12484 INTERGENIC
3L	11966049	3L_11966049_SNP [dm3] 3L_11972949_SNP [dm6]	T	G	7.308e^-5	0.603	NON_SYNONYMOUS_CODING Muc68E DOWNSTREAM CG42397
2R	6735465	2R_6735465_SNP [dm3] 2R_10847960_SNP [dm6]	C	G	7.310e^-5	0.603	INTRON CG30015
3L	4314608	3L_4314608_SNP [dm3] 3L_4314608_SNP [dm6]	T	C	7.327e^-5	0.603	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	4314621	3L_4314621_SNP [dm3] 3L_4314621_SNP [dm6]	G	T	7.327e^-5	0.603	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
2L	4179723	2L_4179723_DEL [dm3] 2L_4179723_DEL [dm6]	CCGAAAGCTGAAAAC...	C	7.402e^-5	0.605	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	10558898	2R_10558898_SNP [dm3] 2R_14671393_SNP [dm6]	T	C	7.423e^-5	0.605	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866 DOWNSTREAM mspo
X	10864317	X_10864317_SNP [dm3] X_10970284_SNP [dm6]	C	T	7.552e^-5	0.613	INTRON CG42339
X	19757100	X_19757100_SNP [dm3] X_19863067_SNP [dm6]	T	C	7.678e^-5	0.621	SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8933816	2L_8933816_SNP [dm3] 2L_8933816_SNP [dm6]	T	G	7.830e^-5	0.628	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
2L	4179502	2L_4179502_SNP [dm3] 2L_4179502_SNP [dm6]	G	T	7.850e^-5	0.628	INTERGENIC
2L	8188335	2L_8188335_SNP [dm3] 2L_8188335_SNP [dm6]	T	C	7.864e^-5	0.628	NON_SYNONYMOUS_CODING Piezo
X	12880717	X_12880717_SNP [dm3] X_12986684_SNP [dm6]	G	T	7.936e^-5	0.63	INTERGENIC
3R	16616873	3R_16616873_SNP [dm3] 3R_20791151_SNP [dm6]	C	T	7.984e^-5	0.63	INTRON Syp
3L	8782455	3L_8782455_SNP [dm3] 3L_8789355_SNP [dm6]	T	A	7.991e^-5	0.63	UPSTREAM CG5804 INTRON Fhos
3L	352294	3L_352294_INS [dm3] 3L_352294_INS [dm6]	T	TACCT	8.108e^-5	0.634	SPLICE_SITE_REGION Ptpmeg INTRON Ptpmeg
2R	6099541	2R_6099541_SNP [dm3] 2R_10212036_SNP [dm6]	A	C	8.115e^-5	0.634	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16467413	2R_16467413_SNP [dm3] 2R_20579908_SNP [dm6]	T	C	8.177e^-5	0.635	INTRON qsm
2L	8977752	2L_8977752_SNP [dm3] 2L_8977752_SNP [dm6]	T	A	8.199e^-5	0.635	DOWNSTREAM CG13101 INTERGENIC
2R	18292500	2R_18292500_SNP [dm3] 2R_22404995_SNP [dm6]	T	C	8.249e^-5	0.637	INTRON CG6044	TF binding site mE1_TFBS_Trl
3L	1576568	3L_1576568_SNP [dm3] 3L_1576568_SNP [dm6]	G	A	8.445e^-5	0.647	UPSTREAM CG13917 DOWNSTREAM CG12004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23962340	3R_23962340_SNP [dm3] 3R_28136618_SNP [dm6]	T	C	8.493e^-5	0.647	INTERGENIC
3L	13965818	3L_13965818_SNP [dm3] 3L_13972718_SNP [dm6]	T	A	8.552e^-5	0.647	UTR_3_PRIME Nxf3 & 1 other DOWNSTREAM ssp2 & 2 others
3R	11049794	3R_11049794_SNP [dm3] 3R_15224072_SNP [dm6]	C	T	8.616e^-5	0.647	SYNONYMOUS_CODING CG31344 UPSTREAM Rpb7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9595034	2L_9595034_SNP [dm3] 2L_9595034_SNP [dm6]	A	C	8.724e^-5	0.647	INTERGENIC	regulatory region REDfly_CRMs
X	5574539	X_5574539_SNP [dm3] X_5680506_SNP [dm6]	C	A	8.804e^-5	0.647	UPSTREAM Gr5a & 1 other DOWNSTREAM CR44958 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12621561	3L_12621561_SNP [dm3] 3L_12628461_SNP [dm6]	C	A	8.847e^-5	0.647	INTRON CR32111	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3412742	X_3412742_SNP [dm3] X_3518709_SNP [dm6]	T	G	8.860e^-5	0.647	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
X	9851613	X_9851613_SNP [dm3] X_9957580_SNP [dm6]	C	T	8.929e^-5	0.647	INTERGENIC
3L	10570057	3L_10570057_DEL [dm3] 3L_10576957_DEL [dm6]	CC	C	8.990e^-5	0.647	INTRON A2bp1
2L	10298305	2L_10298305_SNP [dm3] 2L_10298305_SNP [dm6]	C	T	8.994e^-5	0.647	UPSTREAM CYLD INTRON CYLD EXON CR44968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3L	9752793	3L_9752793_SNP [dm3] 3L_9759693_SNP [dm6]	C	A	9.033e^-5	0.647	INTRON CG42268
3L	9168126	3L_9168126_SNP [dm3] 3L_9175026_SNP [dm6]	G	A	9.080e^-5	0.647	INTRON Rdl
3L	16497688	3L_16497688_SNP [dm3] 3L_16504588_SNP [dm6]	C	T	9.087e^-5	0.647	INTRON CG43373
3R	16070126	3R_16070126_SNP [dm3] 3R_20244404_SNP [dm6]	G	A	9.105e^-5	0.647	UTR_3_PRIME Nlg4	TF binding site BDTNP1_TFBS_sna
3L	4000944	3L_4000944_SNP [dm3] 3L_4000944_SNP [dm6]	T	A	9.160e^-5	0.647	INTERGENIC
2R	10657409	2R_10657409_SNP [dm3] 2R_14769904_SNP [dm6]	C	G	9.162e^-5	0.647	SYNONYMOUS_CODING CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	3971754	2L_3971754_SNP [dm3] 2L_3971754_SNP [dm6]	G	A	9.164e^-5	0.647	INTRON fred
2R	6994275	2R_6994275_SNP [dm3] 2R_11106770_SNP [dm6]	G	T	9.207e^-5	0.647	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3412751	X_3412751_SNP [dm3] X_3518718_SNP [dm6]	A	C	9.210e^-5	0.647	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
X	3412679	X_3412679_INS [dm3] X_3518646_INS [dm6]	C	CG	9.245e^-5	0.647	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
X	3412746	X_3412746_INS [dm3] X_3518713_INS [dm6]	T	TCAGAT	9.245e^-5	0.647	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	4314082	3L_4314082_SNP [dm3] 3L_4314082_SNP [dm6]	G	A	9.251e^-5	0.647	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10657269	2R_10657269_DEL [dm3] 2R_14769764_DEL [dm6]	TTCGGT	T	9.265e^-5	0.647	FRAME_SHIFT CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	5450931	X_5450931_SNP [dm3] X_5556898_SNP [dm6]	A	C	9.293e^-5	0.647	INTRON Vsx2
X	19011994	X_19011994_SNP [dm3] X_19117961_SNP [dm6]	C	T	9.313e^-5	0.647	INTERGENIC
3L	2713429	3L_2713429_SNP [dm3] 3L_2713429_SNP [dm6]	A	T	9.326e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4339244	3L_4339244_SNP [dm3] 3L_4339244_SNP [dm6]	A	G	9.345e^-5	0.647	INTRON Cip4
3R	23978621	3R_23978621_SNP [dm3] 3R_28152899_SNP [dm6]	G	T	9.414e^-5	0.647	INTRON CG34354
3L	1334291	3L_1334291_SNP [dm3] 3L_1334291_SNP [dm6]	T	A	9.468e^-5	0.647	NON_SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	10577804	3L_10577804_SNP [dm3] 3L_10584704_SNP [dm6]	T	A	9.483e^-5	0.647	INTRON A2bp1
3L	2407514	3L_2407514_SNP [dm3] 3L_2407514_SNP [dm6]	A	T	9.576e^-5	0.647	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4341563	3L_4341563_SNP [dm3] 3L_4341563_SNP [dm6]	G	A	9.605e^-5	0.647	INTRON Cip4
X	5828599	X_5828599_INS [dm3] X_5934566_INS [dm6]	A	AA	9.627e^-5	0.647	INTRON CG3726
X	19056394	X_19056394_SNP [dm3] X_19162361_SNP [dm6]	T	C	9.629e^-5	0.647	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18316174	2R_18316174_SNP [dm3] 2R_22428669_SNP [dm6]	A	G	9.632e^-5	0.647	SYNONYMOUS_CODING ppk12
X	19012009	X_19012009_SNP [dm3] X_19117976_SNP [dm6]	A	G	9.664e^-5	0.647	INTERGENIC
3L	9752794	3L_9752794_SNP [dm3] 3L_9759694_SNP [dm6]	C	A	9.726e^-5	0.649	INTRON CG42268
3R	4266100	3R_4266100_SNP [dm3] 3R_8440378_SNP [dm6]	C	A	9.768e^-5	0.649	INTRON CG45263
2R	10655280	2R_10655280_SNP [dm3] 2R_14767775_SNP [dm6]	A	C	9.895e^-5	0.649	INTRON Spred	TF binding site BDTNP1_TFBS_dl
X	15855476	X_15855476_SNP [dm3] X_15961443_SNP [dm6]	T	A	9.903e^-5	0.649	INTRON mmd
X	3412666	X_3412666_SNP [dm3] X_3518633_SNP [dm6]	A	G	9.911e^-5	0.649	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	17795727	2R_17795727_SNP [dm3] 2R_21908222_SNP [dm6]	C	T	9.947e^-5	0.649	INTRON Fili
2R	10216085	2R_10216085_SNP [dm3] 2R_14328580_SNP [dm6]	A	G	9.947e^-5	0.649	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
3R	26911948	3R_26911948_DEL [dm3] 3R_31086226_DEL [dm6]	TT	T	9.976e^-5	0.649	INTERGENIC
X	13313846	X_13313846_SNP [dm3] X_13419813_SNP [dm6]	G	A	1.009e^-4	0.649	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12604485	X_12604485_SNP [dm3] X_12710452_SNP [dm6]	T	A	1.010e^-4	0.649	SYNONYMOUS_CODING Smr
X	3412660	X_3412660_SNP [dm3] X_3518627_SNP [dm6]	G	A	1.015e^-4	0.649	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	7351461	2L_7351461_SNP [dm3] 2L_7351461_SNP [dm6]	A	G	1.017e^-4	0.649	NON_SYNONYMOUS_CODING Wnt6	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	2241039	X_2241039_SNP [dm3] X_2347006_SNP [dm6]	C	T	1.017e^-4	0.649	NON_SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_sens
3L	18150546	3L_18150546_DEL [dm3] 3L_18157446_DEL [dm6]	TACT	T	1.021e^-4	0.649	INTRON CG13699
3L	6799236	3L_6799236_SNP [dm3] 3L_6806136_SNP [dm6]	T	A	1.022e^-4	0.649	INTERGENIC	regulatory region REDfly_CRMs
X	12163565	X_12163565_SNP [dm3] X_12269532_SNP [dm6]	T	C	1.025e^-4	0.649	INTRON Ten-a
3R	25402404	3R_25402404_SNP [dm3] 3R_29576682_SNP [dm6]	T	G	1.038e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	18391527	2R_18391527_SNP [dm3] 2R_22504022_SNP [dm6]	T	G	1.048e^-4	0.658	INTRON px
3R	18714993	3R_18714993_SNP [dm3] 3R_22889271_SNP [dm6]	T	C	1.051e^-4	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10657893	2R_10657893_SNP [dm3] 2R_14770388_SNP [dm6]	C	G	1.052e^-4	0.658	UTR_5_PRIME CG42254 UPSTREAM Spred & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	17937698	2R_17937698_INS [dm3] 2R_22050193_INS [dm6]	A	AC	1.056e^-4	0.658	INTERGENIC
X	9200605	X_9200605_SNP [dm3] X_9306572_SNP [dm6]	C	G	1.064e^-4	0.66	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10528040	2R_10528040_DEL [dm3] 2R_14640535_DEL [dm6]	AA	A	1.067e^-4	0.66	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6999693	3R_6999693_SNP [dm3] 3R_11173971_SNP [dm6]	C	T	1.074e^-4	0.66	SYNONYMOUS_CODING Ugt86Dj
2L	15441295	2L_15441295_SNP [dm3] 2L_15441295_SNP [dm6]	G	A	1.076e^-4	0.66	UPSTREAM CR44862 INTERGENIC
3L	6799240	3L_6799240_SNP [dm3] 3L_6806140_SNP [dm6]	G	A	1.077e^-4	0.66	INTERGENIC	regulatory region REDfly_CRMs
2R	10657368	2R_10657368_SNP [dm3] 2R_14769863_SNP [dm6]	A	G	1.082e^-4	0.66	NON_SYNONYMOUS_CODING CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	10233158	3L_10233158_SNP [dm3] 3L_10240058_SNP [dm6]	G	A	1.083e^-4	0.66	UPSTREAM CR45403 INTERGENIC
X	2584899	X_2584899_SNP [dm3] X_2690866_SNP [dm6]	C	T	1.087e^-4	0.66	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
2R	16995019	2R_16995019_SNP [dm3] 2R_21107514_SNP [dm6]	A	G	1.094e^-4	0.661	INTRON ktub
X	16943553	X_16943553_SNP [dm3] X_17049520_SNP [dm6]	G	A	1.098e^-4	0.661	INTRON CG45002
2R	10216471	2R_10216471_SNP [dm3] 2R_14328966_SNP [dm6]	A	G	1.100e^-4	0.661	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
3L	2482888	3L_2482888_SNP [dm3] 3L_2482888_SNP [dm6]	T	C	1.105e^-4	0.661	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1140467	2L_1140467_SNP [dm3] 2L_1140467_SNP [dm6]	G	C	1.110e^-4	0.661	UTR_3_PRIME CG4577
X	3412522	X_3412522_SNP [dm3] X_3518489_SNP [dm6]	T	A	1.110e^-4	0.661	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	12891333	2R_12891333_SNP [dm3] 2R_17003828_SNP [dm6]	C	A	1.113e^-4	0.661	DOWNSTREAM CG6796 INTRON NiPp1
2L	16201798	2L_16201798_SNP [dm3] 2L_16201798_SNP [dm6]	A	G	1.118e^-4	0.662	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4314053	3L_4314053_DEL [dm3] 3L_4314053_DEL [dm6]	AGAG	A	1.131e^-4	0.666		TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	482513	X_482513_SNP [dm3] X_588480_SNP [dm6]	G	A	1.136e^-4	0.666	INTRON vnd & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22130399	3R_22130399_SNP [dm3] 3R_26304677_SNP [dm6]	T	C	1.139e^-4	0.666	INTERGENIC
2R	6792712	2R_6792712_SNP [dm3] 2R_10905207_SNP [dm6]	A	T	1.141e^-4	0.666	INTRON CG12943
3R	23774336	3R_23774336_SNP [dm3] 3R_27948614_SNP [dm6]	G	A	1.150e^-4	0.668	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	11732664	2R_11732664_SNP [dm3] 2R_15845159_SNP [dm6]	C	T	1.151e^-4	0.668	INTRON tun & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5914739	3L_5914739_SNP [dm3] 3L_5921639_SNP [dm6]	A	C	1.153e^-4	0.668	UPSTREAM CG32407 & 1 other INTERGENIC
3R	23637579	3R_23637579_SNP [dm3] 3R_27811857_SNP [dm6]	G	C	1.160e^-4	0.669	INTRON CG34353
3L	2298645	3L_2298645_SNP [dm3] 3L_2298645_SNP [dm6]	G	T	1.164e^-4	0.669	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22818595	3L_22818595_SNP [dm3] 3L_22825495_SNP [dm6]	A	G	1.166e^-4	0.669	UPSTREAM jim INTRON jim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10514165	3R_10514165_SNP [dm3] 3R_14688443_SNP [dm6]	G	A	1.179e^-4	0.669	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9851486	X_9851486_SNP [dm3] X_9957453_SNP [dm6]	C	A	1.181e^-4	0.669	INTERGENIC
3L	9396842	3L_9396842_SNP [dm3] 3L_9403742_SNP [dm6]	T	A	1.182e^-4	0.669	INTERGENIC
3L	2407684	3L_2407684_SNP [dm3] 3L_2407684_SNP [dm6]	G	A	1.184e^-4	0.669	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9200603	X_9200603_SNP [dm3] X_9306570_SNP [dm6]	G	T	1.191e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4947774	3L_4947774_SNP [dm3] 3L_4947774_SNP [dm6]	T	G	1.192e^-4	0.669	INTRON Con
2R	10656845	2R_10656845_DEL [dm3] 2R_14769340_DEL [dm6]	TT	G	1.199e^-4	0.669	UTR_5_PRIME Spred DOWNSTREAM CG42254 INTRON Spred	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13201945	3R_13201945_SNP [dm3] 3R_17376223_SNP [dm6]	C	T	1.200e^-4	0.669	SYNONYMOUS_CODING Brf
3L	11960559	3L_11960559_SNP [dm3] 3L_11967459_SNP [dm6]	A	C	1.202e^-4	0.669	UTR_3_PRIME Muc68E
X	12163578	X_12163578_SNP [dm3] X_12269545_SNP [dm6]	A	T	1.206e^-4	0.669	INTRON Ten-a
3L	8311578	3L_8311578_SNP [dm3] 3L_8318478_SNP [dm6]	T	A	1.209e^-4	0.669	DOWNSTREAM CG43059 INTERGENIC
X	9192417	X_9192417_SNP [dm3] X_9298384_SNP [dm6]	G	A	1.209e^-4	0.669	INTRON lz
2L	13145650	2L_13145650_SNP [dm3] 2L_13145650_SNP [dm6]	C	T	1.217e^-4	0.671	UPSTREAM CR44199 INTERGENIC	TF binding site mE1_TFBS_inv
X	17399753	X_17399753_SNP [dm3] X_17505720_SNP [dm6]	A	T	1.222e^-4	0.671	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	23774323	3R_23774323_SNP [dm3] 3R_27948601_SNP [dm6]	C	T	1.228e^-4	0.671	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7399172	3L_7399172_SNP [dm3] 3L_7406072_SNP [dm6]	T	A	1.236e^-4	0.671	UPSTREAM pncr015:3L INTERGENIC
3R	23637651	3R_23637651_SNP [dm3] 3R_27811929_SNP [dm6]	A	C	1.240e^-4	0.671	INTRON CG34353
X	14152068	X_14152068_SNP [dm3] X_14258035_SNP [dm6]	C	T	1.245e^-4	0.671	SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17982951	3L_17982951_SNP [dm3] 3L_17989851_SNP [dm6]	T	G	1.245e^-4	0.671	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3412592	X_3412592_SNP [dm3] X_3518559_SNP [dm6]	A	G	1.246e^-4	0.671	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	1995869	2R_1995869_SNP [dm3] 2R_6108364_SNP [dm6]	C	T	1.249e^-4	0.671	INTRON EcR
3R	9178292	3R_9178292_SNP [dm3] 3R_13352570_SNP [dm6]	G	T	1.249e^-4	0.671	INTERGENIC
3R	23637587	3R_23637587_SNP [dm3] 3R_27811865_SNP [dm6]	A	T	1.260e^-4	0.675	INTRON CG34353
X	3412578	X_3412578_SNP [dm3] X_3518545_SNP [dm6]	G	C	1.264e^-4	0.676	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	9729077	3R_9729077_SNP [dm3] 3R_13903355_SNP [dm6]	A	G	1.270e^-4	0.676	INTRON ems	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6797928	2R_6797928_SNP [dm3] 2R_10910423_SNP [dm6]	T	A	1.274e^-4	0.676	NON_SYNONYMOUS_CODING Obp47a
X	3332977	X_3332977_SNP [dm3] X_3438944_SNP [dm6]	T	C	1.284e^-4	0.676	INTRON CR44999 & 1 other
2L	10972386	2L_10972386_SNP [dm3] 2L_10972386_SNP [dm6]	G	T	1.296e^-4	0.676	UPSTREAM CG16743 DOWNSTREAM YL-1 INTRON CG16743
X	3412691	X_3412691_SNP [dm3] X_3518658_SNP [dm6]	A	G	1.296e^-4	0.676	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	14602002	3L_14602002_SNP [dm3] 3L_14608902_SNP [dm6]	C	T	1.306e^-4	0.676	INTERGENIC
2R	8463263	2R_8463263_SNP [dm3] 2R_12575758_SNP [dm6]	C	A	1.327e^-4	0.676	UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
2L	18880313	2L_18880313_SNP [dm3] 2L_18880313_SNP [dm6]	T	C	1.327e^-4	0.676	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7738880	3L_7738880_SNP [dm3] 3L_7745780_SNP [dm6]	T	A	1.329e^-4	0.676	INTRON CG32373
2L	12839314	2L_12839314_SNP [dm3] 2L_12839314_SNP [dm6]	T	G	1.330e^-4	0.676	INTERGENIC
2R	12454411	2R_12454411_DEL [dm3] 2R_16566906_DEL [dm6]	AA	A	1.331e^-4	0.676	UTR_5_PRIME CG4945
3R	22380952	3R_22380952_SNP [dm3] 3R_26555230_SNP [dm6]	T	C	1.334e^-4	0.676	SPLICE_SITE_REGION scrib INTRON scrib
2R	15946848	2R_15946848_SNP [dm3] 2R_20059343_SNP [dm6]	T	C	1.353e^-4	0.676	DOWNSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14297435	2L_14297435_SNP [dm3] 2L_14297435_SNP [dm6]	C	T	1.357e^-4	0.676	INTRON wb
3L	10569469	3L_10569469_SNP [dm3] 3L_10576369_SNP [dm6]	C	A	1.358e^-4	0.676	INTRON A2bp1
3R	23637616	3R_23637616_SNP [dm3] 3R_27811894_SNP [dm6]	T	A	1.361e^-4	0.676	INTRON CG34353
2R	17101239	2R_17101239_SNP [dm3] 2R_21213734_SNP [dm6]	G	A	1.361e^-4	0.676	SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245	TF binding site mE1_TFBS_sens
3L	14603019	3L_14603019_DEL [dm3] 3L_14609919_DEL [dm6]	TATAA	T	1.363e^-4	0.676	INTERGENIC
2R	16947428	2R_16947428_SNP [dm3] 2R_21059923_SNP [dm6]	T	C	1.368e^-4	0.676	SYNONYMOUS_CODING CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl
2R	6634293	2R_6634293_SNP [dm3] 2R_10746788_SNP [dm6]	C	T	1.369e^-4	0.676	INTRON CG33144
3R	25879174	3R_25879174_SNP [dm3] 3R_30053452_SNP [dm6]	G	C	1.373e^-4	0.676	SYNONYMOUS_CODING CG7946	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9545219	3L_9545219_SNP [dm3] 3L_9552119_SNP [dm6]	T	C	1.374e^-4	0.676	INTRON CG42673
X	16872372	X_16872372_SNP [dm3] X_16978339_SNP [dm6]	A	G	1.381e^-4	0.676	INTRON CG45002
2R	12889560	2R_12889560_SNP [dm3] 2R_17002055_SNP [dm6]	C	T	1.381e^-4	0.676	SYNONYMOUS_CODING CG6796 UPSTREAM ste24a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16493579	3L_16493579_SNP [dm3] 3L_16500479_SNP [dm6]	T	A	1.385e^-4	0.676	DOWNSTREAM st INTRON CG43373
X	18479066	X_18479066_SNP [dm3] X_18585033_SNP [dm6]	C	T	1.389e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3740122	3L_3740122_SNP [dm3] 3L_3740122_SNP [dm6]	A	G	1.390e^-4	0.676	INTRON CG32264
3R	26037683	3R_26037683_SNP [dm3] 3R_30211961_SNP [dm6]	C	G	1.390e^-4	0.676	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
2L	7333351	2L_7333351_SNP [dm3] 2L_7333351_SNP [dm6]	G	A	1.396e^-4	0.676	UPSTREAM Wnt6 INTERGENIC
X	17323871	X_17323871_SNP [dm3] X_17429838_SNP [dm6]	C	G	1.400e^-4	0.676	INTRON CG12994
2R	17096454	2R_17096454_SNP [dm3] 2R_21208949_SNP [dm6]	A	C	1.401e^-4	0.676	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2R	17096460	2R_17096460_SNP [dm3] 2R_21208955_SNP [dm6]	T	A	1.401e^-4	0.676	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
3L	10563298	3L_10563298_SNP [dm3] 3L_10570198_SNP [dm6]	A	G	1.402e^-4	0.676	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2L	4332832	2L_4332832_SNP [dm3] 2L_4332832_SNP [dm6]	C	T	1.405e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	4313219	3L_4313219_SNP [dm3] 3L_4313219_SNP [dm6]	C	T	1.406e^-4	0.676	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8929216	3L_8929216_SNP [dm3] 3L_8936116_SNP [dm6]	G	C	1.409e^-4	0.676	SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18808705	3L_18808705_SNP [dm3] 3L_18815605_SNP [dm6]	T	A	1.411e^-4	0.676	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6688078	2R_6688078_SNP [dm3] 2R_10800573_SNP [dm6]	C	T	1.413e^-4	0.676	UTR_3_PRIME wde	TF binding site mE1_TFBS_cad
X	2584632	X_2584632_SNP [dm3] X_2690599_SNP [dm6]	A	G	1.421e^-4	0.676	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3R	25095199	3R_25095199_SNP [dm3] 3R_29269477_SNP [dm6]	T	A	1.427e^-4	0.676	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9398338	3L_9398338_SNP [dm3] 3L_9405238_SNP [dm6]	A	C	1.430e^-4	0.676	DOWNSTREAM CG4022 INTRON Cpr67B
3L	10581658	3L_10581658_DEL [dm3] 3L_10588558_DEL [dm6]	CTAC	C	1.430e^-4	0.676	INTRON A2bp1
2L	5516775	2L_5516775_SNP [dm3] 2L_5516775_SNP [dm6]	A	T	1.431e^-4	0.676	UPSTREAM CG14020 INTERGENIC
3L	2408521	3L_2408521_SNP [dm3] 3L_2408521_SNP [dm6]	C	A	1.432e^-4	0.676	UTR_3_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18803634	3L_18803634_SNP [dm3] 3L_18810534_SNP [dm6]	C	A	1.433e^-4	0.676	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	16454727	2R_16454727_SNP [dm3] 2R_20567222_SNP [dm6]	G	A	1.439e^-4	0.676	INTRON qsm
3L	12304038	3L_12304038_SNP [dm3] 3L_12310938_SNP [dm6]	A	G	1.440e^-4	0.676	INTRON CG44355
2R	16485385	2R_16485385_SNP [dm3] 2R_20597880_SNP [dm6]	C	T	1.444e^-4	0.676	INTRON bl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18904447	2L_18904447_SNP [dm3] 2L_18904447_SNP [dm6]	G	T	1.450e^-4	0.676	INTERGENIC
3R	23738046	3R_23738046_SNP [dm3] 3R_27912324_SNP [dm6]	A	T	1.452e^-4	0.676	UPSTREAM hanabi INTERGENIC
X	791119	X_791119_SNP [dm3] X_897086_SNP [dm6]	C	T	1.452e^-4	0.676	INTRON CG43867
2L	8242109	2L_8242109_SNP [dm3] 2L_8242109_SNP [dm6]	T	C	1.455e^-4	0.676	UPSTREAM CG14277 & 1 other EXON CR43262
3L	8929222	3L_8929222_SNP [dm3] 3L_8936122_SNP [dm6]	A	C	1.458e^-4	0.676	SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8205673	2L_8205673_SNP [dm3] 2L_8205673_SNP [dm6]	T	G	1.460e^-4	0.676	UPSTREAM SLC5A11 & 2 others DOWNSTREAM CR44121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15356950	X_15356950_SNP [dm3] X_15462917_SNP [dm6]	G	A	1.463e^-4	0.676	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM shtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_HSA
3L	8667090	3L_8667090_SNP [dm3] 3L_8673990_SNP [dm6]	A	T	1.469e^-4	0.676	INTERGENIC	regulatory region REDfly_CRMs
X	19010678	X_19010678_SNP [dm3] X_19116645_SNP [dm6]	T	C	1.473e^-4	0.676	INTERGENIC
X	1669943	X_1669943_SNP [dm3] X_1775910_SNP [dm6]	T	C	1.477e^-4	0.676	INTRON Adar & 1 other
3R	23637652	3R_23637652_SNP [dm3] 3R_27811930_SNP [dm6]	T	C	1.479e^-4	0.676	INTRON CG34353
3R	23637610	3R_23637610_SNP [dm3] 3R_27811888_SNP [dm6]	A	C	1.481e^-4	0.676	INTRON CG34353
3R	8939713	3R_8939713_SNP [dm3] 3R_13113991_SNP [dm6]	T	C	1.493e^-4	0.68	INTRON timeout
2L	11933443	2L_11933443_SNP [dm3] 2L_11933443_SNP [dm6]	T	C	1.502e^-4	0.681	INTERGENIC
3R	23652076	3R_23652076_SNP [dm3] 3R_27826354_SNP [dm6]	G	T	1.513e^-4	0.681	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10581532	3L_10581532_SNP [dm3] 3L_10588432_SNP [dm6]	A	T	1.517e^-4	0.681	INTRON A2bp1
X	3412517	X_3412517_INS [dm3] X_3518484_INS [dm6]	A	AGAA	1.517e^-4	0.681	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	9232696	3L_9232696_SNP [dm3] 3L_9239596_SNP [dm6]	G	A	1.517e^-4	0.681	INTERGENIC
3L	1977839	3L_1977839_SNP [dm3] 3L_1977839_SNP [dm6]	A	T	1.520e^-4	0.681	INTERGENIC
3R	9178974	3R_9178974_SNP [dm3] 3R_13353252_SNP [dm6]	G	T	1.521e^-4	0.681	UPSTREAM mthl12 INTERGENIC
2L	4340935	2L_4340935_SNP [dm3] 2L_4340935_SNP [dm6]	C	T	1.526e^-4	0.681	INTRON Atet
2L	8205674	2L_8205674_SNP [dm3] 2L_8205674_SNP [dm6]	G	T	1.535e^-4	0.681	UPSTREAM SLC5A11 & 2 others DOWNSTREAM CR44121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16534862	X_16534862_SNP [dm3] X_16640829_SNP [dm6]	T	A	1.536e^-4	0.681	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	17777981	2R_17777981_SNP [dm3] 2R_21890476_SNP [dm6]	C	T	1.536e^-4	0.681	INTRON Fili	TF binding site BDTNP1_TFBS_twi
2R	17843468	2R_17843468_SNP [dm3] 2R_21955963_SNP [dm6]	A	C	1.540e^-4	0.681	INTERGENIC
3L	13153855	3L_13153855_SNP [dm3] 3L_13160755_SNP [dm6]	A	G	1.545e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8930415	2L_8930415_SNP [dm3] 2L_8930415_SNP [dm6]	G	T	1.548e^-4	0.681	INTRON CG34398	TF binding site mE1_TFBS_chinmo
2R	14930622	2R_14930622_SNP [dm3] 2R_19043117_SNP [dm6]	A	G	1.557e^-4	0.683	INTERGENIC
3R	19357118	3R_19357118_SNP [dm3] 3R_23531396_SNP [dm6]	T	A	1.561e^-4	0.683	UPSTREAM CG10175 INTERGENIC
2L	11934245	2L_11934245_SNP [dm3] 2L_11934245_SNP [dm6]	T	C	1.565e^-4	0.683	UPSTREAM Or33a INTERGENIC
X	18748267	X_18748267_SNP [dm3] X_18854234_SNP [dm6]	A	G	1.566e^-4	0.683	SYNONYMOUS_CODING CG34422	TF binding site mE1_TFBS_chinmo
2R	15193023	2R_15193023_SNP [dm3] 2R_19305518_SNP [dm6]	T	G	1.578e^-4	0.684	NON_SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	4339344	3L_4339344_SNP [dm3] 3L_4339344_SNP [dm6]	A	G	1.581e^-4	0.684	INTRON Cip4
3L	7400317	3L_7400317_SNP [dm3] 3L_7407217_SNP [dm6]	C	T	1.585e^-4	0.684	DOWNSTREAM pncr015:3L INTERGENIC
2R	7066642	2R_7066642_SNP [dm3] 2R_11179137_SNP [dm6]	G	T	1.586e^-4	0.684	INTRON shn	TF binding site mE1_TFBS_inv
2L	7807928	2L_7807928_SNP [dm3] 2L_7807928_SNP [dm6]	C	T	1.586e^-4	0.684	INTRON cdc14	TF binding site mE1_TFBS_HSA
2R	8393889	2R_8393889_SNP [dm3] 2R_12506384_SNP [dm6]	G	A	1.593e^-4	0.685	INTRON fdl	TF binding site BDTNP1_TFBS_dl
3L	138580	3L_138580_SNP [dm3] 3L_138580_SNP [dm6]	A	T	1.604e^-4	0.688	INTRON Pdk1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7804325	2R_7804325_SNP [dm3] 2R_11916820_SNP [dm6]	G	A	1.609e^-4	0.688	INTERGENIC
3L	4045442	3L_4045442_SNP [dm3] 3L_4045442_SNP [dm6]	G	A	1.611e^-4	0.688	INTERGENIC
2L	8242077	2L_8242077_SNP [dm3] 2L_8242077_SNP [dm6]	C	A	1.613e^-4	0.688	UPSTREAM CG14277 & 1 other EXON CR43262
2R	6994376	2R_6994376_SNP [dm3] 2R_11106871_SNP [dm6]	T	A	1.622e^-4	0.688	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10281133	2L_10281133_SNP [dm3] 2L_10281133_SNP [dm6]	T	C	1.631e^-4	0.688	UPSTREAM CG34043 DOWNSTREAM CG5604 INTERGENIC
2R	8393886	2R_8393886_SNP [dm3] 2R_12506381_SNP [dm6]	A	G	1.633e^-4	0.688	INTRON fdl	TF binding site BDTNP1_TFBS_dl
X	5828615	X_5828615_SNP [dm3] X_5934582_SNP [dm6]	T	C	1.634e^-4	0.688	INTRON CG3726
3L	11967938	3L_11967938_SNP [dm3] 3L_11974838_SNP [dm6]	A	G	1.644e^-4	0.688	UPSTREAM CG14125 INTERGENIC
2R	10657281	2R_10657281_SNP [dm3] 2R_14769776_SNP [dm6]	A	C	1.652e^-4	0.688	STOP_GAINED CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	4261671	3R_4261671_SNP [dm3] 3R_8435949_SNP [dm6]	T	G	1.657e^-4	0.688	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9032663	3L_9032663_SNP [dm3] 3L_9039563_SNP [dm6]	T	C	1.657e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7382772	3L_7382772_SNP [dm3] 3L_7389672_SNP [dm6]	G	A	1.660e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13782821	3R_13782821_MNP [dm3] 3R_17957099_MNP [dm6]	AGAT	TTTC	1.664e^-4	0.688	INTRON cpo
3R	13782826	3R_13782826_MNP [dm3] 3R_17957104_MNP [dm6]	AAC	TTT	1.664e^-4	0.688	INTRON cpo
2R	15195564	2R_15195564_SNP [dm3] 2R_19308059_SNP [dm6]	A	T	1.673e^-4	0.688	UTR_3_PRIME EndoB DOWNSTREAM CG7461
2R	10806345	2R_10806345_INS [dm3] 2R_14918840_INS [dm6]	A	AAAA	1.675e^-4	0.688	INTRON CG10249
2R	6681087	2R_6681087_SNP [dm3] 2R_10793582_SNP [dm6]	T	C	1.679e^-4	0.688	DOWNSTREAM mthl13 INTRON CG33144
3L	8929219	3L_8929219_SNP [dm3] 3L_8936119_SNP [dm6]	G	A	1.683e^-4	0.688	SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12165379	X_12165379_SNP [dm3] X_12271346_SNP [dm6]	C	T	1.685e^-4	0.688	INTRON Ten-a
3R	26958520	3R_26958520_SNP [dm3] 3R_31132798_SNP [dm6]	G	C	1.688e^-4	0.688	INTRON CR43458 EXON CR43458
3L	22768294	3L_22768294_SNP [dm3] 3L_22775194_SNP [dm6]	T	C	1.688e^-4	0.688	INTRON SPoCk	TF binding site mE1_TFBS_inv
3L	6799232	3L_6799232_SNP [dm3] 3L_6806132_SNP [dm6]	T	G	1.693e^-4	0.688	INTERGENIC	regulatory region REDfly_CRMs
3L	5677742	3L_5677742_SNP [dm3] 3L_5684642_SNP [dm6]	T	A	1.693e^-4	0.688	INTRON sif
X	5612591	X_5612591_SNP [dm3] X_5718558_SNP [dm6]	T	C	1.694e^-4	0.688	UPSTREAM CG33080 DOWNSTREAM CG32758 INTERGENIC
3R	23811973	3R_23811973_SNP [dm3] 3R_27986251_SNP [dm6]	A	G	1.695e^-4	0.688	INTRON betaTub97EF
2L	8930426	2L_8930426_SNP [dm3] 2L_8930426_SNP [dm6]	T	A	1.702e^-4	0.688	INTRON CG34398	TF binding site mE1_TFBS_chinmo
2R	6633104	2R_6633104_SNP [dm3] 2R_10745599_SNP [dm6]	G	A	1.703e^-4	0.688	INTRON CG33144
X	5642965	X_5642965_SNP [dm3] X_5748932_SNP [dm6]	A	C	1.722e^-4	0.693	INTRON CG4078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12304028	3L_12304028_SNP [dm3] 3L_12310928_SNP [dm6]	C	T	1.723e^-4	0.693	INTRON CG44355
2L	5509886	2L_5509886_SNP [dm3] 2L_5509886_SNP [dm6]	T	C	1.726e^-4	0.693	INTERGENIC
2R	10656028	2R_10656028_SNP [dm3] 2R_14768523_SNP [dm6]	T	A	1.729e^-4	0.693	INTRON Spred	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4689033	3L_4689033_SNP [dm3] 3L_4689033_SNP [dm6]	A	T	1.733e^-4	0.693	UTR_3_PRIME CG18418 UPSTREAM CG7514
2L	18359757	2L_18359757_SNP [dm3] 2L_18359757_SNP [dm6]	C	G	1.736e^-4	0.693	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4321445	3L_4321445_SNP [dm3] 3L_4321445_SNP [dm6]	C	T	1.745e^-4	0.695	SYNONYMOUS_CODING CG15014 DOWNSTREAM CG32250	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18302218	3R_18302218_SNP [dm3] 3R_22476496_SNP [dm6]	G	A	1.753e^-4	0.696	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8379927	3R_8379927_SNP [dm3] 3R_12554205_SNP [dm6]	G	A	1.755e^-4	0.696	INTRON Octbeta2R
X	19085748	X_19085748_SNP [dm3] X_19191715_SNP [dm6]	C	A	1.762e^-4	0.696	DOWNSTREAM HP1D3csd & 1 other INTERGENIC
2L	7216119	2L_7216119_SNP [dm3] 2L_7216119_SNP [dm6]	A	G	1.769e^-4	0.696	INTRON CG13784
2L	4333616	2L_4333616_SNP [dm3] 2L_4333616_SNP [dm6]	A	G	1.771e^-4	0.696	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17013144	2R_17013144_SNP [dm3] 2R_21125639_SNP [dm6]	T	A	1.775e^-4	0.696	SYNONYMOUS_CODING CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	800509	X_800509_SNP [dm3] X_906476_SNP [dm6]	A	T	1.778e^-4	0.696	INTRON CG43867
2L	10435788	2L_10435788_SNP [dm3] 2L_10435788_SNP [dm6]	G	A	1.785e^-4	0.696	UPSTREAM holn1 & 1 other INTERGENIC
3L	16752489	3L_16752489_SNP [dm3] 3L_16759389_SNP [dm6]	T	A	1.789e^-4	0.696	INTERGENIC
3L	22854907	3L_22854907_DEL [dm3] 3L_22861807_DEL [dm6]	GATCAATG	G	1.794e^-4	0.696	DOWNSTREAM CG13239 INTERGENIC
3R	14869673	3R_14869673_SNP [dm3] 3R_19043951_SNP [dm6]	G	T	1.794e^-4	0.696	NON_SYNONYMOUS_CODING CG6026 DOWNSTREAM cdi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12593250	3L_12593250_SNP [dm3] 3L_12600150_SNP [dm6]	C	T	1.795e^-4	0.696	INTERGENIC
X	799739	X_799739_SNP [dm3] X_905706_SNP [dm6]	T	A	1.802e^-4	0.696	INTRON CG43867
2R	3314614	2R_3314614_SNP [dm3] 2R_7427109_SNP [dm6]	A	C	1.804e^-4	0.696	DOWNSTREAM CG11145 INTRON so	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16998198	3L_16998198_DEL [dm3] 3L_17005098_DEL [dm6]	CAAGAGTCGTC...	C	1.818e^-4	0.696	INTRON CG3764
2R	15060461	2R_15060461_SNP [dm3] 2R_19172956_SNP [dm6]	C	T	1.820e^-4	0.696	INTRON CG10737
2R	6113162	2R_6113162_SNP [dm3] 2R_10225657_SNP [dm6]	T	C	1.820e^-4	0.696	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15625191	3L_15625191_SNP [dm3] 3L_15632091_SNP [dm6]	C	A	1.820e^-4	0.696	SYNONYMOUS_CODING comm3 INTRON comm3
X	1666798	X_1666798_SNP [dm3] X_1772765_SNP [dm6]	C	A	1.821e^-4	0.696	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16534931	X_16534931_SNP [dm3] X_16640898_SNP [dm6]	G	T	1.822e^-4	0.696	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9178770	3R_9178770_SNP [dm3] 3R_13353048_SNP [dm6]	G	T	1.827e^-4	0.696	UPSTREAM mthl12 INTERGENIC
X	13907089	X_13907089_SNP [dm3] X_14013056_SNP [dm6]	T	G	1.839e^-4	0.696	INTERGENIC
3L	4337100	3L_4337100_SNP [dm3] 3L_4337100_SNP [dm6]	T	C	1.840e^-4	0.696	INTRON Cip4
2R	18718525	2R_18718525_SNP [dm3] 2R_22831002_SNP [dm6]	C	T	1.841e^-4	0.696	SYNONYMOUS_CODING CG30272	TF binding site mE1_TFBS_sens
2R	10527968	2R_10527968_SNP [dm3] 2R_14640463_SNP [dm6]	G	A	1.842e^-4	0.696	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2764254	3L_2764254_SNP [dm3] 3L_2764254_SNP [dm6]	T	A	1.852e^-4	0.696	INTRON Mrtf
3L	17402405	3L_17402405_SNP [dm3] 3L_17409305_SNP [dm6]	T	C	1.854e^-4	0.696	NON_SYNONYMOUS_CODING blot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	9212768	2R_9212768_SNP [dm3] 2R_13325263_SNP [dm6]	A	T	1.867e^-4	0.696	INTERGENIC
3L	8130079	3L_8130079_SNP [dm3] 3L_8136979_SNP [dm6]	A	G	1.867e^-4	0.696	UPSTREAM mus301 INTRON CG7504	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
2L	11934223	2L_11934223_SNP [dm3] 2L_11934223_SNP [dm6]	C	A	1.867e^-4	0.696	UPSTREAM Or33a INTERGENIC
3R	23637612	3R_23637612_SNP [dm3] 3R_27811890_SNP [dm6]	G	C	1.875e^-4	0.696	INTRON CG34353
3R	25095061	3R_25095061_SNP [dm3] 3R_29269339_SNP [dm6]	G	T	1.876e^-4	0.696	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27101747	3R_27101747_SNP [dm3] 3R_31276025_SNP [dm6]	G	T	1.878e^-4	0.696	INTERGENIC
2L	4179489	2L_4179489_SNP [dm3] 2L_4179489_SNP [dm6]	T	A	1.882e^-4	0.696	INTERGENIC
3R	23637550	3R_23637550_SNP [dm3] 3R_27811828_SNP [dm6]	G	A	1.889e^-4	0.696	INTRON CG34353
2R	6995667	2R_6995667_SNP [dm3] 2R_11108162_SNP [dm6]	T	C	1.890e^-4	0.696	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7758874	3L_7758874_SNP [dm3] 3L_7765774_SNP [dm6]	T	A	1.900e^-4	0.696	SPLICE_SITE_REGION Clk INTRON Clk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5828644	X_5828644_SNP [dm3] X_5934611_SNP [dm6]	G	A	1.901e^-4	0.696	INTRON CG3726
3L	8357772	3L_8357772_SNP [dm3] 3L_8364672_SNP [dm6]	A	T	1.905e^-4	0.696	INTERGENIC
2L	2501630	2L_2501630_SNP [dm3] 2L_2501630_SNP [dm6]	G	C	1.906e^-4	0.696	INTERGENIC
3R	26799330	3R_26799330_SNP [dm3] 3R_30973608_SNP [dm6]	T	G	1.910e^-4	0.696	INTRON 5-HT7
X	5700504	X_5700504_SNP [dm3] X_5806471_SNP [dm6]	G	C	1.911e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16465556	2R_16465556_SNP [dm3] 2R_20578051_SNP [dm6]	A	G	1.914e^-4	0.696	INTRON qsm
X	12241703	X_12241703_SNP [dm3] X_12347670_SNP [dm6]	G	A	1.921e^-4	0.696	INTERGENIC
3L	4339953	3L_4339953_SNP [dm3] 3L_4339953_SNP [dm6]	T	A	1.926e^-4	0.696	INTRON Cip4
3L	14657634	3L_14657634_SNP [dm3] 3L_14664534_SNP [dm6]	G	T	1.927e^-4	0.696	INTRON dlp
X	1669914	X_1669914_SNP [dm3] X_1775881_SNP [dm6]	A	T	1.928e^-4	0.696	INTRON Adar & 1 other
2R	8804148	2R_8804148_SNP [dm3] 2R_12916643_SNP [dm6]	T	C	1.928e^-4	0.696	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2582969	X_2582969_SNP [dm3] X_2688936_SNP [dm6]	G	T	1.928e^-4	0.696	NON_SYNONYMOUS_CODING per	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10094712	3L_10094712_SNP [dm3] 3L_10101612_SNP [dm6]	G	T	1.936e^-4	0.697	UPSTREAM CG42826 INTRON dpr6
X	11268348	X_11268348_DEL [dm3] X_11374315_DEL [dm6]	GC	G	1.942e^-4	0.698	UTR_5_PRIME dlg1
3L	15787302	3L_15787302_SNP [dm3] 3L_15794202_SNP [dm6]	T	A	1.949e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	9544757	3L_9544757_SNP [dm3] 3L_9551657_SNP [dm6]	A	T	1.950e^-4	0.698	INTRON CG42673
2R	6612491	2R_6612491_SNP [dm3] 2R_10724986_SNP [dm6]	G	A	1.956e^-4	0.699	SYNONYMOUS_CODING Rab3 UPSTREAM CG12309
3R	9592286	3R_9592286_SNP [dm3] 3R_13766564_SNP [dm6]	C	G	1.962e^-4	0.7	UPSTREAM Cht5 INTRON CG9312
3L	5574391	3L_5574391_SNP [dm3] 3L_5581291_SNP [dm6]	G	T	1.971e^-4	0.702	INTERGENIC
2R	2774082	2R_2774082_SNP [dm3] 2R_6886577_SNP [dm6]	A	T	1.976e^-4	0.702	NON_SYNONYMOUS_CODING Spn42De
3L	4092754	3L_4092754_SNP [dm3] 3L_4092754_SNP [dm6]	C	A	1.989e^-4	0.702	UPSTREAM CG14990 DOWNSTREAM CG14989 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2R	10655501	2R_10655501_SNP [dm3] 2R_14767996_SNP [dm6]	G	A	1.993e^-4	0.702	SPLICE_SITE_REGION Spred INTRON Spred	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6695025	2L_6695025_SNP [dm3] 2L_6695025_SNP [dm6]	A	T	1.999e^-4	0.702	INTRON Tsp
3L	1693937	3L_1693937_SNP [dm3] 3L_1693937_SNP [dm6]	C	T	2.002e^-4	0.702	UPSTREAM CG12011 INTRON CG7991
2L	2111230	2L_2111230_SNP [dm3] 2L_2111230_SNP [dm6]	T	C	2.011e^-4	0.702	INTERGENIC
2L	5516708	2L_5516708_SNP [dm3] 2L_5516708_SNP [dm6]	A	G	2.017e^-4	0.702	INTERGENIC
2L	18663636	2L_18663636_SNP [dm3] 2L_18663636_SNP [dm6]	C	T	2.019e^-4	0.702	INTERGENIC
3L	10562794	3L_10562794_SNP [dm3] 3L_10569694_SNP [dm6]	T	A	2.023e^-4	0.702	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19349615	2R_19349615_SNP [dm3] 2R_23462092_SNP [dm6]	C	T	2.027e^-4	0.702	INTRON CG43795	TF binding site mE1_TFBS_inv
3R	23652330	3R_23652330_SNP [dm3] 3R_27826608_SNP [dm6]	G	C	2.029e^-4	0.702	INTRON CG34353	TF binding site BDTNP1_TFBS_da
3L	12607862	3L_12607862_SNP [dm3] 3L_12614762_SNP [dm6]	T	G	2.032e^-4	0.702	INTRON caup	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	18515924	2R_18515924_SNP [dm3] 2R_22628419_SNP [dm6]	A	C	2.034e^-4	0.702	SYNONYMOUS_CODING CG33143
2R	16466867	2R_16466867_SNP [dm3] 2R_20579362_SNP [dm6]	A	C	2.038e^-4	0.702	INTRON qsm
3L	14656794	3L_14656794_SNP [dm3] 3L_14663694_SNP [dm6]	A	C	2.043e^-4	0.702	INTRON dlp
X	2584683	X_2584683_SNP [dm3] X_2690650_SNP [dm6]	A	G	2.044e^-4	0.702	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3R	9122327	3R_9122327_SNP [dm3] 3R_13296605_SNP [dm6]	A	C	2.045e^-4	0.702	SYNONYMOUS_CODING CG8773
3R	22064050	3R_22064050_SNP [dm3] 3R_26238328_SNP [dm6]	A	G	2.049e^-4	0.702	INTRON CR42745
3L	5574368	3L_5574368_SNP [dm3] 3L_5581268_SNP [dm6]	T	C	2.058e^-4	0.702	INTERGENIC
3L	4341599	3L_4341599_SNP [dm3] 3L_4341599_SNP [dm6]	G	A	2.059e^-4	0.702	INTRON Cip4
3R	23637613	3R_23637613_SNP [dm3] 3R_27811891_SNP [dm6]	T	C	2.060e^-4	0.702	INTRON CG34353
3R	23637615	3R_23637615_SNP [dm3] 3R_27811893_SNP [dm6]	G	T	2.060e^-4	0.702	INTRON CG34353
3R	23637617	3R_23637617_DEL [dm3] 3R_27811895_DEL [dm6]	GGG	G	2.060e^-4	0.702	INTRON CG34353
3L	4314718	3L_4314718_SNP [dm3] 3L_4314718_SNP [dm6]	G	C	2.069e^-4	0.704	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	22868072	3L_22868072_DEL [dm3] 3L_22874972_DEL [dm6]	ATCCTGATTA	A	2.077e^-4	0.705	INTRON Chro	transposable element FlyBase
3L	4348786	3L_4348786_SNP [dm3] 3L_4348786_SNP [dm6]	C	T	2.078e^-4	0.705	DOWNSTREAM CR45156 INTRON Cip4
2R	13768100	2R_13768100_SNP [dm3] 2R_17880595_SNP [dm6]	T	C	2.098e^-4	0.705	SYNONYMOUS_CODING CG30110 UPSTREAM CG30325 INTRON Elk	TF binding site mE1_TFBS_HSA
X	12577923	X_12577923_SNP [dm3] X_12683890_SNP [dm6]	G	T	2.109e^-4	0.705	DOWNSTREAM Smr INTERGENIC
2R	18331770	2R_18331770_SNP [dm3] 2R_22444265_SNP [dm6]	T	C	2.110e^-4	0.705	INTERGENIC
2R	14930617	2R_14930617_SNP [dm3] 2R_19043112_SNP [dm6]	A	T	2.110e^-4	0.705	INTERGENIC
3L	22867967	3L_22867967_DEL [dm3] 3L_22874867_DEL [dm6]	CCCTCGAG	C	2.114e^-4	0.705	INTRON Chro
3L	4314962	3L_4314962_SNP [dm3] 3L_4314962_SNP [dm6]	T	C	2.114e^-4	0.705	NON_SYNONYMOUS_CODING Claspin
2R	18467306	2R_18467306_SNP [dm3] 2R_22579801_SNP [dm6]	A	T	2.116e^-4	0.705	INTRON dnr1
3L	12587041	3L_12587041_SNP [dm3] 3L_12593941_SNP [dm6]	G	A	2.121e^-4	0.705	INTRON ara
2R	17096288	2R_17096288_SNP [dm3] 2R_21208783_SNP [dm6]	T	A	2.122e^-4	0.705	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19051148	X_19051148_SNP [dm3] X_19157115_SNP [dm6]	G	A	2.122e^-4	0.705	INTRON RhoGAP18B
3L	4336944	3L_4336944_SNP [dm3] 3L_4336944_SNP [dm6]	C	T	2.129e^-4	0.705	INTRON Cip4
3R	23774274	3R_23774274_SNP [dm3] 3R_27948552_SNP [dm6]	T	C	2.133e^-4	0.705	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	421598	3L_421598_SNP [dm3] 3L_421598_SNP [dm6]	T	C	2.136e^-4	0.705	INTERGENIC	TF binding site mE1_TFBS_sens
2L	16151347	2L_16151347_INS [dm3] 2L_16151347_INS [dm6]	C	TGGTT	2.140e^-4	0.705	INTERGENIC
3L	12091619	3L_12091619_SNP [dm3] 3L_12098519_SNP [dm6]	A	T	2.140e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1185253	2L_1185253_SNP [dm3] 2L_1185253_SNP [dm6]	A	C	2.147e^-4	0.705	SYNONYMOUS_CODING Tgt UPSTREAM CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11305810	3L_11305810_SNP [dm3] 3L_11312710_SNP [dm6]	C	T	2.153e^-4	0.705	SYNONYMOUS_CODING CG7573
3L	15877071	3L_15877071_SNP [dm3] 3L_15883971_SNP [dm6]	G	A	2.156e^-4	0.705	DOWNSTREAM CR44050 INTRON pHCl
2R	8951562	2R_8951562_SNP [dm3] 2R_13064057_SNP [dm6]	G	T	2.159e^-4	0.705	INTRON Drl-2
3L	22528056	3L_22528056_SNP [dm3] 3L_22534956_SNP [dm6]	G	A	2.166e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4339136	3L_4339136_SNP [dm3] 3L_4339136_SNP [dm6]	T	C	2.168e^-4	0.705	INTRON Cip4
2L	14994604	2L_14994604_SNP [dm3] 2L_14994604_SNP [dm6]	C	A	2.170e^-4	0.705	INTRON mol
3R	23774301	3R_23774301_SNP [dm3] 3R_27948579_SNP [dm6]	T	A	2.171e^-4	0.705	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7274807	2L_7274807_SNP [dm3] 2L_7274807_SNP [dm6]	A	T	2.175e^-4	0.705	INTRON Wnt4
2R	11767137	2R_11767137_SNP [dm3] 2R_15879632_SNP [dm6]	G	A	2.178e^-4	0.705	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3733396	2R_3733396_SNP [dm3] 2R_7845891_SNP [dm6]	G	A	2.181e^-4	0.705	INTRON Dgk
3R	23650631	3R_23650631_SNP [dm3] 3R_27824909_SNP [dm6]	G	A	2.185e^-4	0.705	INTRON CG34353
2R	16423047	2R_16423047_SNP [dm3] 2R_20535542_SNP [dm6]	A	G	2.191e^-4	0.705	UTR_3_PRIME CG18067 DOWNSTREAM CG18067
3R	23774307	3R_23774307_SNP [dm3] 3R_27948585_SNP [dm6]	T	C	2.196e^-4	0.705	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16453416	2R_16453416_SNP [dm3] 2R_20565911_SNP [dm6]	T	A	2.199e^-4	0.705	INTRON qsm
X	3412513	X_3412513_SNP [dm3] X_3518480_SNP [dm6]	T	C	2.204e^-4	0.705	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	12809985	2R_12809985_SNP [dm3] 2R_16922480_SNP [dm6]	T	A	2.210e^-4	0.705	INTERGENIC
2L	4180567	2L_4180567_SNP [dm3] 2L_4180567_SNP [dm6]	G	A	2.224e^-4	0.705	INTERGENIC
3L	1059211	3L_1059211_SNP [dm3] 3L_1059211_SNP [dm6]	T	G	2.224e^-4	0.705	INTRON bab1
3L	14687303	3L_14687303_DEL [dm3] 3L_14694203_DEL [dm6]	GG	G	2.226e^-4	0.705	INTRON ome
3L	11226775	3L_11226775_SNP [dm3] 3L_11233675_SNP [dm6]	G	A	2.227e^-4	0.705	INTRON Ir68a
3L	3325217	3L_3325217_SNP [dm3] 3L_3325217_SNP [dm6]	C	T	2.231e^-4	0.705	NON_SYNONYMOUS_CODING CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2407450	3L_2407450_SNP [dm3] 3L_2407450_SNP [dm6]	G	A	2.234e^-4	0.705	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24476971	3R_24476971_SNP [dm3] 3R_28651249_SNP [dm6]	G	A	2.247e^-4	0.705	UPSTREAM CG31050 INTERGENIC
2R	17717940	2R_17717940_SNP [dm3] 2R_21830435_SNP [dm6]	T	G	2.253e^-4	0.705	INTRON CG13492
3L	9029769	3L_9029769_SNP [dm3] 3L_9036669_SNP [dm6]	T	C	2.259e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18751673	2R_18751673_SNP [dm3] 2R_22864150_SNP [dm6]	C	T	2.262e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	3412667	X_3412667_SNP [dm3] X_3518634_SNP [dm6]	C	T	2.262e^-4	0.705	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	2910819	3L_2910819_SNP [dm3] 3L_2910819_SNP [dm6]	G	A	2.267e^-4	0.705	INTRON Shab
X	18748450	X_18748450_SNP [dm3] X_18854417_SNP [dm6]	C	T	2.268e^-4	0.705	SYNONYMOUS_CODING CG34422	TF binding site mE1_TFBS_chinmo
3R	23637584	3R_23637584_SNP [dm3] 3R_27811862_SNP [dm6]	C	A	2.276e^-4	0.705	INTRON CG34353
2R	14930484	2R_14930484_SNP [dm3] 2R_19042979_SNP [dm6]	A	T	2.276e^-4	0.705	INTERGENIC
2R	19451101	2R_19451101_SNP [dm3] 2R_23563578_SNP [dm6]	G	C	2.281e^-4	0.705	SYNONYMOUS_CODING Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7804312	2R_7804312_SNP [dm3] 2R_11916807_SNP [dm6]	T	G	2.284e^-4	0.705	INTERGENIC
3L	4034753	3L_4034753_SNP [dm3] 3L_4034753_SNP [dm6]	T	C	2.288e^-4	0.705	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d UPSTREAM CR45042
3L	4034766	3L_4034766_SNP [dm3] 3L_4034766_SNP [dm6]	G	A	2.288e^-4	0.705	NON_SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d UPSTREAM CR45042
3L	17606176	3L_17606176_DEL [dm3] 3L_17613076_DEL [dm6]	AT	A	2.306e^-4	0.705	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2821682	3L_2821682_SNP [dm3] 3L_2821682_SNP [dm6]	G	C	2.308e^-4	0.705	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6496153	2L_6496153_SNP [dm3] 2L_6496153_SNP [dm6]	A	G	2.319e^-4	0.705	UTR_3_PRIME CG31638 UPSTREAM CG9550
2L	1197023	2L_1197023_SNP [dm3] 2L_1197023_SNP [dm6]	C	G	2.320e^-4	0.705	DOWNSTREAM CG5001 INTERGENIC
X	18096081	X_18096081_SNP [dm3] X_18202048_SNP [dm6]	T	C	2.324e^-4	0.705	UTR_3_PRIME Frq2
2R	15193070	2R_15193070_SNP [dm3] 2R_19305565_SNP [dm6]	C	G	2.324e^-4	0.705	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	11966522	3L_11966522_SNP [dm3] 3L_11973422_SNP [dm6]	T	A	2.327e^-4	0.705	NON_SYNONYMOUS_CODING CG42397 UPSTREAM Muc68E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12816573	2R_12816573_SNP [dm3] 2R_16929068_SNP [dm6]	G	T	2.336e^-4	0.705	INTRON Pkc53E
X	2096260	X_2096260_SNP [dm3] X_2202227_SNP [dm6]	C	T	2.339e^-4	0.705	UPSTREAM CR43637 INTRON Mct1 & 1 other
3R	24465853	3R_24465853_SNP [dm3] 3R_28640131_SNP [dm6]	C	T	2.342e^-4	0.705	INTERGENIC
3R	9135699	3R_9135699_SNP [dm3] 3R_13309977_SNP [dm6]	A	G	2.342e^-4	0.705	INTRON CG32473
3R	18970774	3R_18970774_SNP [dm3] 3R_23145052_SNP [dm6]	C	T	2.346e^-4	0.705	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8205655	2L_8205655_DEL [dm3] 2L_8205655_DEL [dm6]	CAATTTTAAAAACA...	G	2.347e^-4	0.705	UPSTREAM SLC5A11 & 2 others DOWNSTREAM CR44121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2764061	3L_2764061_SNP [dm3] 3L_2764061_SNP [dm6]	G	A	2.352e^-4	0.705	INTRON Mrtf
2L	3541065	2L_3541065_SNP [dm3] 2L_3541065_SNP [dm6]	C	T	2.352e^-4	0.705	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	14659788	3R_14659788_SNP [dm3] 3R_18834066_SNP [dm6]	A	G	2.361e^-4	0.705	INTRON CG18208
3R	22855114	3R_22855114_SNP [dm3] 3R_27029392_SNP [dm6]	C	T	2.361e^-4	0.705	INTRON RYa-R
X	1669917	X_1669917_SNP [dm3] X_1775884_SNP [dm6]	G	A	2.366e^-4	0.705	INTRON Adar & 1 other
3L	5149808	3L_5149808_SNP [dm3] 3L_5156708_SNP [dm6]	G	A	2.367e^-4	0.705	UTR_3_PRIME shep
3L	14603011	3L_14603011_DEL [dm3] 3L_14609911_DEL [dm6]	ATTCAT	A	2.375e^-4	0.705	INTERGENIC
X	19091497	X_19091497_SNP [dm3] X_19197464_SNP [dm6]	G	A	2.376e^-4	0.705	UTR_3_PRIME CG7990
3L	13342468	3L_13342468_SNP [dm3] 3L_13349368_SNP [dm6]	G	C	2.377e^-4	0.705	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_twi
3R	9131394	3R_9131394_SNP [dm3] 3R_13305672_SNP [dm6]	A	G	2.379e^-4	0.705	INTRON CG32473
2R	16276934	2R_16276934_SNP [dm3] 2R_20389429_SNP [dm6]	A	T	2.381e^-4	0.705	INTERGENIC
3L	18910560	3L_18910560_SNP [dm3] 3L_18917460_SNP [dm6]	T	C	2.383e^-4	0.705	UPSTREAM CG6839 INTERGENIC
X	3412524	X_3412524_SNP [dm3] X_3518491_SNP [dm6]	A	T	2.383e^-4	0.705	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	16367305	2R_16367305_SNP [dm3] 2R_20479800_SNP [dm6]	A	G	2.386e^-4	0.705	DOWNSTREAM CG12484 INTERGENIC
2R	2774518	2R_2774518_SNP [dm3] 2R_6887013_SNP [dm6]	G	A	2.387e^-4	0.705	SYNONYMOUS_CODING Spn42De	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6751515	2R_6751515_SNP [dm3] 2R_10864010_SNP [dm6]	C	G	2.391e^-4	0.705	INTRON CG30015
2L	21814077	2L_21814077_DEL [dm3] 2L_21814077_DEL [dm6]	ATCCGAGTCGAA...	A	2.391e^-4	0.705	INTERGENIC
3L	10982736	3L_10982736_SNP [dm3] 3L_10989636_SNP [dm6]	C	T	2.396e^-4	0.705	INTRON klu	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15769652	3L_15769652_SNP [dm3] 3L_15776552_SNP [dm6]	C	A	2.398e^-4	0.705	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5574359	3L_5574359_DEL [dm3] 3L_5581259_DEL [dm6]	AG	A	2.406e^-4	0.705	INTERGENIC
3R	5096430	3R_5096430_SNP [dm3] 3R_9270708_SNP [dm6]	G	A	2.406e^-4	0.705	DOWNSTREAM Vps16A INTERGENIC
2L	4167098	2L_4167098_SNP [dm3] 2L_4167098_SNP [dm6]	A	C	2.406e^-4	0.705	UPSTREAM Or24a INTERGENIC
X	10411599	X_10411599_SNP [dm3] X_10517566_SNP [dm6]	A	C	2.407e^-4	0.705	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8289609	X_8289609_SNP [dm3] X_8395576_SNP [dm6]	A	C	2.418e^-4	0.705	INTERGENIC
3L	12587043	3L_12587043_SNP [dm3] 3L_12593943_SNP [dm6]	T	A	2.419e^-4	0.705	INTRON ara
2L	14101093	2L_14101093_SNP [dm3] 2L_14101093_SNP [dm6]	G	C	2.422e^-4	0.705	INTERGENIC
3L	12604345	3L_12604345_SNP [dm3] 3L_12611245_SNP [dm6]	G	T	2.423e^-4	0.705	INTRON caup
2R	16929448	2R_16929448_SNP [dm3] 2R_21041943_SNP [dm6]	C	A	2.426e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12604021	3L_12604021_SNP [dm3] 3L_12610921_SNP [dm6]	T	C	2.427e^-4	0.705	INTRON caup	TF binding site mE1_TFBS_HSA
X	9975140	X_9975140_SNP [dm3] X_10081107_SNP [dm6]	A	C	2.432e^-4	0.705	SYNONYMOUS_CODING ZAP3
2L	12839310	2L_12839310_SNP [dm3] 2L_12839310_SNP [dm6]	G	T	2.436e^-4	0.705	INTERGENIC
3L	17982949	3L_17982949_SNP [dm3] 3L_17989849_SNP [dm6]	G	T	2.445e^-4	0.707	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4042835	2L_4042835_SNP [dm3] 2L_4042835_SNP [dm6]	T	C	2.453e^-4	0.708	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14593028	3L_14593028_SNP [dm3] 3L_14599928_SNP [dm6]	A	G	2.468e^-4	0.711	UPSTREAM HGTX INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	13259463	X_13259463_SNP [dm3] X_13365430_SNP [dm6]	C	T	2.473e^-4	0.711	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6822509	3L_6822509_SNP [dm3] 3L_6829409_SNP [dm6]	G	C	2.477e^-4	0.711	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9135883	3R_9135883_SNP [dm3] 3R_13310161_SNP [dm6]	A	C	2.490e^-4	0.713	SYNONYMOUS_CODING CG32473
2R	7440194	2R_7440194_SNP [dm3] 2R_11552689_SNP [dm6]	A	C	2.492e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14930473	2R_14930473_SNP [dm3] 2R_19042968_SNP [dm6]	T	C	2.493e^-4	0.713	INTERGENIC
2L	18518643	2L_18518643_SNP [dm3] 2L_18518643_SNP [dm6]	C	T	2.510e^-4	0.713	INTRON CG10211
2R	6735339	2R_6735339_SNP [dm3] 2R_10847834_SNP [dm6]	G	A	2.522e^-4	0.713	INTRON CG30015
X	18146308	X_18146308_SNP [dm3] X_18252275_SNP [dm6]	A	T	2.533e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4171022	3L_4171022_SNP [dm3] 3L_4171022_SNP [dm6]	A	G	2.535e^-4	0.713	INTRON Ero1L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	2280606	3R_2280606_SNP [dm3] 3R_6454884_SNP [dm6]	T	A	2.537e^-4	0.713	INTRON CG9727	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2231117	2L_2231117_SNP [dm3] 2L_2231117_SNP [dm6]	G	A	2.537e^-4	0.713	UTR_3_PRIME Sec24CD DOWNSTREAM rti & 1 other
3L	3325149	3L_3325149_SNP [dm3] 3L_3325149_SNP [dm6]	C	T	2.539e^-4	0.713	SYNONYMOUS_CODING CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23655746	3R_23655746_SNP [dm3] 3R_27830024_SNP [dm6]	T	A	2.540e^-4	0.713	INTRON CG34353
3L	9604221	3L_9604221_SNP [dm3] 3L_9611121_SNP [dm6]	A	G	2.554e^-4	0.713	INTRON CG3280
3L	12338737	3L_12338737_SNP [dm3] 3L_12345637_SNP [dm6]	G	T	2.555e^-4	0.713	INTRON CrzR
3L	4343098	3L_4343098_SNP [dm3] 3L_4343098_SNP [dm6]	G	T	2.564e^-4	0.713	INTRON Cip4
3L	2406538	3L_2406538_SNP [dm3] 3L_2406538_SNP [dm6]	T	A	2.567e^-4	0.713	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5331415	3L_5331415_SNP [dm3] 3L_5338315_SNP [dm6]	A	G	2.568e^-4	0.713	INTERGENIC
3L	22867966	3L_22867966_SNP [dm3] 3L_22874866_SNP [dm6]	C	A	2.579e^-4	0.713	INTRON Chro
3L	16765893	3L_16765893_SNP [dm3] 3L_16772793_SNP [dm6]	A	T	2.581e^-4	0.713	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
3R	18729455	3R_18729455_SNP [dm3] 3R_22903733_SNP [dm6]	G	T	2.583e^-4	0.713	INTRON klg	TF binding site mE1_TFBS_chinmo
3R	23637628	3R_23637628_SNP [dm3] 3R_27811906_SNP [dm6]	T	C	2.586e^-4	0.713	INTRON CG34353
2L	11759237	2L_11759237_SNP [dm3] 2L_11759237_SNP [dm6]	A	C	2.588e^-4	0.713	INTERGENIC
3L	2764008	3L_2764008_SNP [dm3] 3L_2764008_SNP [dm6]	G	A	2.590e^-4	0.713	INTRON Mrtf
3R	22163424	3R_22163424_INS [dm3] 3R_26337702_INS [dm6]	A	AA	2.591e^-4	0.713	INTRON CG33970
2R	16381729	2R_16381729_SNP [dm3] 2R_20494224_SNP [dm6]	G	A	2.599e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18624928	2L_18624928_SNP [dm3] 2L_18624928_SNP [dm6]	T	C	2.607e^-4	0.713	INTRON MESR3	TF binding site BDTNP1_TFBS_twi
2L	11246328	2L_11246328_DEL [dm3] 2L_11246328_DEL [dm6]	TTAT	T	2.609e^-4	0.713	INTRON ab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21057239	X_21057239_SNP [dm3] X_21186212_SNP [dm6]	A	T	2.615e^-4	0.713	INTERGENIC
2L	4005352	2L_4005352_SNP [dm3] 2L_4005352_SNP [dm6]	A	G	2.628e^-4	0.713	SYNONYMOUS_CODING CG15422 UPSTREAM CG15423 DOWNSTREAM CG34176
2L	6694995	2L_6694995_SNP [dm3] 2L_6694995_SNP [dm6]	A	C	2.629e^-4	0.713	INTRON Tsp
2L	6695002	2L_6695002_SNP [dm3] 2L_6695002_SNP [dm6]	C	T	2.629e^-4	0.713	INTRON Tsp
3R	24551592	3R_24551592_SNP [dm3] 3R_28725870_SNP [dm6]	G	A	2.631e^-4	0.713	INTRON htt
2R	14930478	2R_14930478_SNP [dm3] 2R_19042973_SNP [dm6]	A	C	2.631e^-4	0.713	INTERGENIC
3L	8357795	3L_8357795_SNP [dm3] 3L_8364695_SNP [dm6]	T	G	2.633e^-4	0.713	INTERGENIC
2R	17872998	2R_17872998_SNP [dm3] 2R_21985493_SNP [dm6]	A	G	2.637e^-4	0.713	DOWNSTREAM CG30401 INTERGENIC
X	12577900	X_12577900_INS [dm3] X_12683867_INS [dm6]	A	AATTTTTGCA	2.639e^-4	0.713	DOWNSTREAM Smr INTERGENIC
X	19085725	X_19085725_SNP [dm3] X_19191692_SNP [dm6]	G	A	2.639e^-4	0.713	DOWNSTREAM HP1D3csd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3412490	X_3412490_SNP [dm3] X_3518457_SNP [dm6]	C	G	2.642e^-4	0.713	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	24627414	3R_24627414_SNP [dm3] 3R_28801692_SNP [dm6]	T	C	2.648e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18833198	2R_18833198_INS [dm3] 2R_22945675_INS [dm6]	G	GCTCGAGTCCTGTGTCCTGA...	2.650e^-4	0.713	DOWNSTREAM CG42694 INTERGENIC
3R	23615890	3R_23615890_SNP [dm3] 3R_27790168_SNP [dm6]	G	C	2.661e^-4	0.713	INTRON CG34353
2R	17790125	2R_17790125_SNP [dm3] 2R_21902620_SNP [dm6]	C	G	2.664e^-4	0.713	INTRON Fili
3L	11961067	3L_11961067_SNP [dm3] 3L_11967967_SNP [dm6]	A	G	2.680e^-4	0.713	SYNONYMOUS_CODING Muc68E
3R	23637561	3R_23637561_SNP [dm3] 3R_27811839_SNP [dm6]	A	G	2.683e^-4	0.713	INTRON CG34353
3L	12596932	3L_12596932_SNP [dm3] 3L_12603832_SNP [dm6]	A	T	2.687e^-4	0.713	INTERGENIC
X	18144720	X_18144720_SNP [dm3] X_18250687_SNP [dm6]	G	T	2.700e^-4	0.713	INTERGENIC
2R	6796501	2R_6796501_SNP [dm3] 2R_10908996_SNP [dm6]	A	G	2.705e^-4	0.713	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12697880	3L_12697880_SNP [dm3] 3L_12704780_SNP [dm6]	A	T	2.709e^-4	0.713	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19857798	3L_19857798_MNP [dm3] 3L_19864698_MNP [dm6]	TAT	GTG	2.721e^-4	0.713	INTERGENIC	transposable element FlyBase
3R	10498336	3R_10498336_SNP [dm3] 3R_14672614_SNP [dm6]	A	C	2.723e^-4	0.713	INTRON Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6797159	3L_6797159_SNP [dm3] 3L_6804059_SNP [dm6]	C	G	2.729e^-4	0.713	INTERGENIC
3R	23607011	3R_23607011_SNP [dm3] 3R_27781289_SNP [dm6]	A	T	2.743e^-4	0.713	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17760048	2R_17760048_SNP [dm3] 2R_21872543_SNP [dm6]	T	C	2.744e^-4	0.713	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4012313	3L_4012313_SNP [dm3] 3L_4012313_SNP [dm6]	T	G	2.744e^-4	0.713	INTERGENIC
2L	10023217	2L_10023217_SNP [dm3] 2L_10023217_SNP [dm6]	A	G	2.745e^-4	0.713	INTERGENIC
2L	12760795	2L_12760795_SNP [dm3] 2L_12760795_SNP [dm6]	G	C	2.748e^-4	0.713	SYNONYMOUS_CODING CG15483
2L	11934238	2L_11934238_SNP [dm3] 2L_11934238_SNP [dm6]	G	T	2.749e^-4	0.713	UPSTREAM Or33a INTERGENIC
3R	9870689	3R_9870689_SNP [dm3] 3R_14044967_SNP [dm6]	T	C	2.751e^-4	0.713	UPSTREAM tRNA:S2b:88A INTERGENIC
2R	17013225	2R_17013225_SNP [dm3] 2R_21125720_SNP [dm6]	T	A	2.751e^-4	0.713	SYNONYMOUS_CODING CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20053194	2R_20053194_SNP [dm3] 2R_24165671_SNP [dm6]	A	C	2.751e^-4	0.713	INTRON CG3328
2L	7843455	2L_7843455_SNP [dm3] 2L_7843455_SNP [dm6]	G	A	2.758e^-4	0.713	INTERGENIC
3L	7400322	3L_7400322_SNP [dm3] 3L_7407222_SNP [dm6]	C	A	2.761e^-4	0.713	DOWNSTREAM pncr015:3L INTERGENIC
2R	10579702	2R_10579702_SNP [dm3] 2R_14692197_SNP [dm6]	G	A	2.761e^-4	0.713	INTRON mspo
2R	6795892	2R_6795892_SNP [dm3] 2R_10908387_SNP [dm6]	T	C	2.762e^-4	0.713	INTERGENIC
3L	8667137	3L_8667137_SNP [dm3] 3L_8674037_SNP [dm6]	C	T	2.764e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
2L	18753650	2L_18753650_SNP [dm3] 2L_18753650_SNP [dm6]	A	T	2.771e^-4	0.713	INTERGENIC
3R	7773536	3R_7773536_SNP [dm3] 3R_11947814_SNP [dm6]	A	T	2.772e^-4	0.713	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl
2R	11732455	2R_11732455_SNP [dm3] 2R_15844950_SNP [dm6]	T	C	2.775e^-4	0.713	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA
3L	16497696	3L_16497696_SNP [dm3] 3L_16504596_SNP [dm6]	T	C	2.776e^-4	0.713	INTRON CG43373
3L	14900065	3L_14900065_SNP [dm3] 3L_14906965_SNP [dm6]	A	C	2.788e^-4	0.713	INTRON DCX-EMAP
2R	12521265	2R_12521265_SNP [dm3] 2R_16633760_SNP [dm6]	A	G	2.796e^-4	0.713	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21827408	2L_21827408_SNP [dm3] 2L_21827408_SNP [dm6]	T	A	2.797e^-4	0.713	INTERGENIC	transposable element FlyBase
2L	6695022	2L_6695022_SNP [dm3] 2L_6695022_SNP [dm6]	A	C	2.799e^-4	0.713	INTRON Tsp
2R	17099937	2R_17099937_SNP [dm3] 2R_21212432_SNP [dm6]	C	T	2.801e^-4	0.713	SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
3L	11965786	3L_11965786_SNP [dm3] 3L_11972686_SNP [dm6]	C	A	2.802e^-4	0.713	SYNONYMOUS_CODING Muc68E DOWNSTREAM CG42397	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1091827	2L_1091827_SNP [dm3] 2L_1091827_SNP [dm6]	A	G	2.802e^-4	0.713	INTRON CG4629
2L	2111231	2L_2111231_DEL [dm3] 2L_2111231_DEL [dm6]	TT	T	2.806e^-4	0.713	INTERGENIC
3L	12619930	3L_12619930_SNP [dm3] 3L_12626830_SNP [dm6]	C	A	2.810e^-4	0.713	INTERGENIC
3L	535305	3L_535305_SNP [dm3] 3L_535305_SNP [dm6]	G	T	2.816e^-4	0.713	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10580329	2R_10580329_SNP [dm3] 2R_14692824_SNP [dm6]	T	A	2.819e^-4	0.713	INTRON mspo
3R	8066592	3R_8066592_DEL [dm3] 3R_12240870_DEL [dm6]	CGAACTTAATCAACTTTTC...	C	2.820e^-4	0.713	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_inv
3L	12710828	3L_12710828_SNP [dm3] 3L_12717728_SNP [dm6]	A	T	2.821e^-4	0.713	INTERGENIC
3R	16818234	3R_16818234_SNP [dm3] 3R_20992512_SNP [dm6]	C	A	2.839e^-4	0.713	UTR_5_PRIME Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18375063	3L_18375063_SNP [dm3] 3L_18381963_SNP [dm6]	T	A	2.843e^-4	0.713	INTERGENIC
3L	12856939	3L_12856939_SNP [dm3] 3L_12863839_SNP [dm6]	T	C	2.844e^-4	0.713	UPSTREAM CG10943 INTERGENIC
X	1667188	X_1667188_SNP [dm3] X_1773155_SNP [dm6]	A	G	2.859e^-4	0.713	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	5446224	3R_5446224_SNP [dm3] 3R_9620502_SNP [dm6]	A	C	2.861e^-4	0.713	INTRON CG8312
2L	3541122	2L_3541122_SNP [dm3] 2L_3541122_SNP [dm6]	A	C	2.877e^-4	0.713	INTRON drm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14656892	3L_14656892_SNP [dm3] 3L_14663792_SNP [dm6]	G	A	2.883e^-4	0.713	INTRON dlp
2R	7882199	2R_7882199_SNP [dm3] 2R_11994694_SNP [dm6]	A	C	2.885e^-4	0.713	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319	transposable element FlyBase
3L	2289161	3L_2289161_SNP [dm3] 3L_2289161_SNP [dm6]	A	T	2.887e^-4	0.713	INTRON MsR2	TF binding site mE1_TFBS_inv
3R	23656468	3R_23656468_SNP [dm3] 3R_27830746_SNP [dm6]	G	T	2.889e^-4	0.713	INTRON CG34353
2R	9796093	2R_9796093_SNP [dm3] 2R_13908588_SNP [dm6]	A	G	2.890e^-4	0.713	INTRON shot
3L	5331763	3L_5331763_SNP [dm3] 3L_5338663_SNP [dm6]	C	A	2.892e^-4	0.713	INTERGENIC
3L	10886319	3L_10886319_SNP [dm3] 3L_10893219_SNP [dm6]	G	A	2.904e^-4	0.713	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	4324737	3L_4324737_DEL [dm3] 3L_4324737_DEL [dm6]	TAAA	T	2.905e^-4	0.713	INTRON Cip4
X	19395830	X_19395830_SNP [dm3] X_19501797_SNP [dm6]	G	A	2.905e^-4	0.713	INTRON Pfrx & 1 other
2R	6719417	2R_6719417_SNP [dm3] 2R_10831912_SNP [dm6]	A	G	2.914e^-4	0.713	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16537469	3L_16537469_SNP [dm3] 3L_16544369_SNP [dm6]	G	T	2.917e^-4	0.713	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
2R	12172779	2R_12172779_SNP [dm3] 2R_16285274_SNP [dm6]	T	C	2.917e^-4	0.713	SYNONYMOUS_CODING CG9068 DOWNSTREAM CR43728
3L	9574291	3L_9574291_SNP [dm3] 3L_9581191_SNP [dm6]	G	A	2.919e^-4	0.713	INTRON CG42673
X	18993146	X_18993146_SNP [dm3] X_19099113_SNP [dm6]	C	G	2.928e^-4	0.713	INTERGENIC
X	2584659	X_2584659_SNP [dm3] X_2690626_SNP [dm6]	A	G	2.930e^-4	0.713	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3L	4978928	3L_4978928_SNP [dm3] 3L_4978928_SNP [dm6]	G	T	2.931e^-4	0.713	INTRON Con	TF binding site BDTNP1_TFBS_da
2R	4525395	2R_4525395_INS [dm3] 2R_8637890_INS [dm6]	T	TAATAAT	2.945e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18060718	3L_18060718_SNP [dm3] 3L_18067618_SNP [dm6]	C	A	2.948e^-4	0.713	INTERGENIC
3R	18714992	3R_18714992_SNP [dm3] 3R_22889270_SNP [dm6]	T	C	2.948e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23688458	3R_23688458_SNP [dm3] 3R_27862736_SNP [dm6]	G	A	2.956e^-4	0.713	INTRON CG34353
2L	8193638	2L_8193638_SNP [dm3] 2L_8193638_SNP [dm6]	T	A	2.960e^-4	0.713	UTR_3_PRIME CG8475 UPSTREAM CR44116 INTRON CG8475
3R	19317149	3R_19317149_SNP [dm3] 3R_23491427_SNP [dm6]	T	C	2.964e^-4	0.713	INTERGENIC
3R	23655733	3R_23655733_SNP [dm3] 3R_27830011_SNP [dm6]	C	T	2.981e^-4	0.713	INTRON CG34353
3L	21764645	3L_21764645_SNP [dm3] 3L_21771545_SNP [dm6]	G	C	2.989e^-4	0.713	DOWNSTREAM CG7370 INTRON CG42689
3L	2271762	3L_2271762_DEL [dm3] 3L_2271762_DEL [dm6]	TAAATTGCTGCCGC...	T	2.989e^-4	0.713	INTRON yellow-g
2L	14904374	2L_14904374_SNP [dm3] 2L_14904374_SNP [dm6]	G	A	2.993e^-4	0.713	INTERGENIC
3L	2605125	3L_2605125_SNP [dm3] 3L_2605125_SNP [dm6]	G	A	2.997e^-4	0.713	INTRON Pxn
3R	23637552	3R_23637552_DEL [dm3] 3R_27811830_DEL [dm6]	TCTTAT	CA	2.998e^-4	0.713	INTRON CG34353
2R	10216021	2R_10216021_SNP [dm3] 2R_14328516_SNP [dm6]	T	C	2.998e^-4	0.713	INTRON Shroom	TF binding site mE1_TFBS_chinmo
3L	10562800	3L_10562800_SNP [dm3] 3L_10569700_SNP [dm6]	T	C	3.013e^-4	0.713	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10216705	2R_10216705_SNP [dm3] 2R_14329200_SNP [dm6]	G	A	3.015e^-4	0.713	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
2L	8205006	2L_8205006_SNP [dm3] 2L_8205006_SNP [dm6]	A	T	3.016e^-4	0.713	UTR_5_PRIME SLC5A11 DOWNSTREAM CR44120 & 1 other EXON CR44119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8813990	3L_8813990_SNP [dm3] 3L_8820890_SNP [dm6]	G	A	3.018e^-4	0.713	INTERGENIC
3L	7739029	3L_7739029_SNP [dm3] 3L_7745929_SNP [dm6]	C	T	3.018e^-4	0.713	INTRON CG32373
3L	11960649	3L_11960649_SNP [dm3] 3L_11967549_SNP [dm6]	A	G	3.019e^-4	0.713	INTRON Muc68E
2R	6635165	2R_6635165_SNP [dm3] 2R_10747660_SNP [dm6]	T	A	3.021e^-4	0.713	INTRON CG33144
2R	17583100	2R_17583100_SNP [dm3] 2R_21695595_SNP [dm6]	G	A	3.023e^-4	0.713	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
3L	3547138	3L_3547138_SNP [dm3] 3L_3547138_SNP [dm6]	G	T	3.024e^-4	0.713	INTRON Eip63E
2L	3260438	2L_3260438_SNP [dm3] 2L_3260438_SNP [dm6]	C	T	3.026e^-4	0.713	DOWNSTREAM CR45337 INTERGENIC
3L	9398343	3L_9398343_SNP [dm3] 3L_9405243_SNP [dm6]	T	C	3.026e^-4	0.713	DOWNSTREAM CG4022 INTRON Cpr67B
3L	1304184	3L_1304184_SNP [dm3] 3L_1304184_SNP [dm6]	G	A	3.030e^-4	0.713	SYNONYMOUS_CODING CG9149 DOWNSTREAM CG2277	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8191935	2L_8191935_SNP [dm3] 2L_8191935_SNP [dm6]	G	C	3.031e^-4	0.713	SYNONYMOUS_CODING CG8475 UTR_3_PRIME CG8475	TF binding site mE1_TFBS_cad
2R	16467150	2R_16467150_SNP [dm3] 2R_20579645_SNP [dm6]	T	C	3.035e^-4	0.713	INTRON qsm
3L	8913580	3L_8913580_SNP [dm3] 3L_8920480_SNP [dm6]	T	G	3.035e^-4	0.713	INTRON Tsp66E
2R	17013369	2R_17013369_SNP [dm3] 2R_21125864_SNP [dm6]	G	C	3.035e^-4	0.713	INTRON CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23660489	3R_23660489_SNP [dm3] 3R_27834767_SNP [dm6]	A	T	3.036e^-4	0.713	INTRON CG34353
3L	7400324	3L_7400324_SNP [dm3] 3L_7407224_SNP [dm6]	C	T	3.041e^-4	0.713	DOWNSTREAM pncr015:3L INTERGENIC
X	16563487	X_16563487_SNP [dm3] X_16669454_SNP [dm6]	A	G	3.046e^-4	0.713	DOWNSTREAM r INTRON CG13012
2R	7882197	2R_7882197_SNP [dm3] 2R_11994692_SNP [dm6]	A	T	3.047e^-4	0.713	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319	transposable element FlyBase
3L	13161674	3L_13161674_SNP [dm3] 3L_13168574_SNP [dm6]	T	C	3.048e^-4	0.713	INTERGENIC
2L	21806597	2L_21806597_SNP [dm3] 2L_21806597_SNP [dm6]	A	G	3.050e^-4	0.713	INTERGENIC
2L	7520381	2L_7520381_SNP [dm3] 2L_7520381_SNP [dm6]	C	T	3.052e^-4	0.713	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10562766	3L_10562766_SNP [dm3] 3L_10569666_SNP [dm6]	A	G	3.073e^-4	0.713	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24431072	3R_24431072_DEL [dm3] 3R_28605350_DEL [dm6]	TCTC	T	3.075e^-4	0.713	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTRON Hrb98DE
3R	20578163	3R_20578163_SNP [dm3] 3R_24752441_SNP [dm6]	T	A	3.080e^-4	0.713	INTRON tld	TF binding site mE1_TFBS_cad
2L	8205647	2L_8205647_SNP [dm3] 2L_8205647_SNP [dm6]	T	C	3.083e^-4	0.713	UPSTREAM SLC5A11 & 1 other DOWNSTREAM CR44121 & 1 other EXON CR44120	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16789932	2R_16789932_SNP [dm3] 2R_20902427_SNP [dm6]	G	C	3.084e^-4	0.713	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1967959	3L_1967959_SNP [dm3] 3L_1967959_SNP [dm6]	G	A	3.086e^-4	0.713	INTRON CG1927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9368125	3L_9368125_DEL [dm3] 3L_9375025_DEL [dm6]	AATTTATATGTA...	A	3.088e^-4	0.713	UPSTREAM CG4461 DOWNSTREAM Hsp22 & 1 other INTERGENIC
3R	26037716	3R_26037716_SNP [dm3] 3R_30211994_SNP [dm6]	G	A	3.090e^-4	0.713	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
2L	10193919	2L_10193919_SNP [dm3] 2L_10193919_SNP [dm6]	G	T	3.095e^-4	0.713	SYNONYMOUS_CODING Sur	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2R	10580163	2R_10580163_SNP [dm3] 2R_14692658_SNP [dm6]	A	C	3.097e^-4	0.713	INTRON mspo
X	6969864	X_6969864_SNP [dm3] X_7075831_SNP [dm6]	C	T	3.107e^-4	0.713	UTR_3_PRIME Sxl DOWNSTREAM Sxl
2L	5666409	2L_5666409_SNP [dm3] 2L_5666409_SNP [dm6]	T	A	3.109e^-4	0.713	INTRON Hsp60C
2R	7132772	2R_7132772_SNP [dm3] 2R_11245267_SNP [dm6]	C	T	3.119e^-4	0.713	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3L	12587262	3L_12587262_SNP [dm3] 3L_12594162_SNP [dm6]	C	A	3.127e^-4	0.713	SPLICE_SITE_REGION ara INTRON ara	TF binding site mE1_TFBS_cad
3R	9129964	3R_9129964_SNP [dm3] 3R_13304242_SNP [dm6]	G	A	3.131e^-4	0.713	SYNONYMOUS_CODING CG32473 UPSTREAM CG32473 DOWNSTREAM CG43208
3R	8507415	3R_8507415_SNP [dm3] 3R_12681693_SNP [dm6]	A	C	3.136e^-4	0.713	UPSTREAM Cyp313a4 DOWNSTREAM kar INTERGENIC
3L	11896361	3L_11896361_DEL [dm3] 3L_11903261_DEL [dm6]	GG	G	3.137e^-4	0.713	INTRON CG44837
3L	11960651	3L_11960651_SNP [dm3] 3L_11967551_SNP [dm6]	A	T	3.139e^-4	0.713	INTRON Muc68E
3R	6064880	3R_6064880_SNP [dm3] 3R_10239158_SNP [dm6]	T	G	3.140e^-4	0.713	INTRON CG42795
2R	10806885	2R_10806885_SNP [dm3] 2R_14919380_SNP [dm6]	A	C	3.140e^-4	0.713	INTRON CG10249	TF binding site mE1_TFBS_cnc
3L	14584763	3L_14584763_SNP [dm3] 3L_14591663_SNP [dm6]	G	A	3.151e^-4	0.713	INTRON HGTX	TF binding site BDTNP1_TFBS_da
3L	18150762	3L_18150762_SNP [dm3] 3L_18157662_SNP [dm6]	C	A	3.152e^-4	0.713	INTRON CG13699
2L	4719926	2L_4719926_SNP [dm3] 2L_4719926_SNP [dm6]	T	C	3.157e^-4	0.713	SYNONYMOUS_CODING CG34351	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	18375062	3L_18375062_SNP [dm3] 3L_18381962_SNP [dm6]	G	A	3.157e^-4	0.713	INTERGENIC
2L	9595032	2L_9595032_SNP [dm3] 2L_9595032_SNP [dm6]	T	C	3.158e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
3L	4321924	3L_4321924_SNP [dm3] 3L_4321924_SNP [dm6]	G	T	3.160e^-4	0.713	NON_SYNONYMOUS_CODING CG15014 DOWNSTREAM CG32250 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13002638	3L_13002638_SNP [dm3] 3L_13009538_SNP [dm6]	C	T	3.160e^-4	0.713	NON_SYNONYMOUS_CODING CG11261 DOWNSTREAM CG14117
3L	8356949	3L_8356949_SNP [dm3] 3L_8363849_SNP [dm6]	T	A	3.165e^-4	0.713	INTERGENIC
3L	4313221	3L_4313221_SNP [dm3] 3L_4313221_SNP [dm6]	A	T	3.167e^-4	0.713	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	4129727	2R_4129727_SNP [dm3] 2R_8242222_SNP [dm6]	C	G	3.177e^-4	0.713	UPSTREAM CR44276 DOWNSTREAM CR44445 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1021675	2L_1021675_SNP [dm3] 2L_1021675_SNP [dm6]	C	A	3.180e^-4	0.713	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6792710	2R_6792710_SNP [dm3] 2R_10905205_SNP [dm6]	A	T	3.181e^-4	0.713	INTRON CG12943
3R	22064055	3R_22064055_SNP [dm3] 3R_26238333_SNP [dm6]	G	A	3.184e^-4	0.713	INTRON CR42745
2L	4340835	2L_4340835_DEL [dm3] 2L_4340835_DEL [dm6]	CCCACACG	C	3.200e^-4	0.713	INTRON Atet
3L	12587038	3L_12587038_SNP [dm3] 3L_12593938_SNP [dm6]	G	A	3.200e^-4	0.713	INTRON ara
3L	12305658	3L_12305658_SNP [dm3] 3L_12312558_SNP [dm6]	C	T	3.201e^-4	0.713	DOWNSTREAM CG44355 INTERGENIC
X	3910032	X_3910032_SNP [dm3] X_4015999_SNP [dm6]	A	G	3.202e^-4	0.713	INTERGENIC
3R	21022994	3R_21022994_SNP [dm3] 3R_25197272_SNP [dm6]	G	C	3.207e^-4	0.713	DOWNSTREAM CG13653 & 1 other INTERGENIC
3R	11469621	3R_11469621_SNP [dm3] 3R_15643899_SNP [dm6]	T	A	3.212e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4336743	3L_4336743_INS [dm3] 3L_4336743_INS [dm6]	T	TAT	3.215e^-4	0.713	INTRON Cip4
X	18478858	X_18478858_SNP [dm3] X_18584825_SNP [dm6]	A	G	3.218e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23637643	3R_23637643_SNP [dm3] 3R_27811921_SNP [dm6]	A	C	3.219e^-4	0.713	INTRON CG34353
2L	13335238	2L_13335238_SNP [dm3] 2L_13335238_SNP [dm6]	T	C	3.238e^-4	0.713	INTERGENIC
2L	4044881	2L_4044881_SNP [dm3] 2L_4044881_SNP [dm6]	C	G	3.238e^-4	0.713	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15636564	X_15636564_SNP [dm3] X_15742531_SNP [dm6]	A	G	3.240e^-4	0.713	UTR_3_PRIME CG8944
X	11864166	X_11864166_SNP [dm3] X_11970133_SNP [dm6]	C	T	3.243e^-4	0.713	INTRON cac
2R	5339869	2R_5339869_SNP [dm3] 2R_9452364_SNP [dm6]	G	A	3.244e^-4	0.713	INTRON Camta
2L	9595256	2L_9595256_SNP [dm3] 2L_9595256_SNP [dm6]	G	A	3.248e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
2L	8346314	2L_8346314_SNP [dm3] 2L_8346314_SNP [dm6]	C	T	3.250e^-4	0.713	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17253118	2R_17253118_SNP [dm3] 2R_21365613_SNP [dm6]	G	C	3.259e^-4	0.713	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	7320474	3R_7320474_SNP [dm3] 3R_11494752_SNP [dm6]	A	C	3.263e^-4	0.713	INTERGENIC
3L	7738897	3L_7738897_SNP [dm3] 3L_7745797_SNP [dm6]	A	G	3.267e^-4	0.713	INTRON CG32373
2R	18316219	2R_18316219_SNP [dm3] 2R_22428714_SNP [dm6]	C	G	3.279e^-4	0.713	SYNONYMOUS_CODING ppk12
3L	12600831	3L_12600831_SNP [dm3] 3L_12607731_SNP [dm6]	A	G	3.280e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6888435	X_6888435_SNP [dm3] X_6994402_SNP [dm6]	A	C	3.282e^-4	0.713	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl
X	6888503	X_6888503_SNP [dm3] X_6994470_SNP [dm6]	C	T	3.282e^-4	0.713	UPSTREAM Inx7 INTRON Inx7	TF binding site BDTNP1_TFBS_dl
2R	4504790	2R_4504790_SNP [dm3] 2R_8617285_SNP [dm6]	T	C	3.284e^-4	0.713	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12587258	3L_12587258_SNP [dm3] 3L_12594158_SNP [dm6]	T	A	3.286e^-4	0.713	SPLICE_SITE_REGION ara INTRON ara	TF binding site mE1_TFBS_cad
X	770933	X_770933_SNP [dm3] X_876900_SNP [dm6]	T	G	3.294e^-4	0.713	DOWNSTREAM CG11664 INTRON CG43867
X	19046444	X_19046444_INS [dm3] X_19152411_INS [dm6]	A	AA	3.296e^-4	0.713	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	16986752	2L_16986752_SNP [dm3] 2L_16986752_SNP [dm6]	C	T	3.297e^-4	0.713	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6847709	3L_6847709_INS [dm3] 3L_6854609_INS [dm6]	T	TC	3.303e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10018274	X_10018274_SNP [dm3] X_10124241_SNP [dm6]	G	T	3.303e^-4	0.713	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3L	2269394	3L_2269394_SNP [dm3] 3L_2269394_SNP [dm6]	C	T	3.306e^-4	0.713	SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1675648	3L_1675648_INS [dm3] 3L_1675648_INS [dm6]	T	TT	3.306e^-4	0.713	INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20586886	3R_20586886_SNP [dm3] 3R_24761164_SNP [dm6]	C	A	3.311e^-4	0.713	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
3L	4926142	3L_4926142_SNP [dm3] 3L_4926142_SNP [dm6]	A	G	3.315e^-4	0.713	INTERGENIC
3R	9769762	3R_9769762_INS [dm3] 3R_13944040_INS [dm6]	T	ATTTGTCTGGGAC...	3.318e^-4	0.713	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad
X	10428563	X_10428563_SNP [dm3] X_10534530_SNP [dm6]	G	A	3.322e^-4	0.713	INTRON spri
2R	12176151	2R_12176151_SNP [dm3] 2R_16288646_SNP [dm6]	C	G	3.323e^-4	0.713	SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CR43730	TF binding site mE1_TFBS_cad
X	4762076	X_4762076_SNP [dm3] X_4868043_SNP [dm6]	A	T	3.330e^-4	0.713	INTRON CG42594
2L	4042295	2L_4042295_INS [dm3] 2L_4042295_INS [dm6]	T	TT	3.330e^-4	0.713	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6746855	2R_6746855_SNP [dm3] 2R_10859350_SNP [dm6]	G	T	3.333e^-4	0.713	UPSTREAM CR44302 INTRON CG30015	TF binding site BDTNP1_TFBS_dl
2R	10216031	2R_10216031_SNP [dm3] 2R_14328526_SNP [dm6]	A	T	3.333e^-4	0.713	INTRON Shroom	TF binding site mE1_TFBS_chinmo
2R	16467336	2R_16467336_SNP [dm3] 2R_20579831_SNP [dm6]	C	T	3.333e^-4	0.713	INTRON qsm
2L	18794817	2L_18794817_SNP [dm3] 2L_18794817_SNP [dm6]	C	T	3.337e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23811645	3R_23811645_SNP [dm3] 3R_27985923_SNP [dm6]	C	T	3.343e^-4	0.713	INTRON betaTub97EF
3L	9939772	3L_9939772_SNP [dm3] 3L_9946672_SNP [dm6]	C	G	3.348e^-4	0.713	INTRON CG34356
3L	9939778	3L_9939778_SNP [dm3] 3L_9946678_SNP [dm6]	T	G	3.348e^-4	0.713	INTRON CG34356
3L	15199350	3L_15199350_SNP [dm3] 3L_15206250_SNP [dm6]	T	G	3.352e^-4	0.713	INTERGENIC
2R	10527673	2R_10527673_SNP [dm3] 2R_14640168_SNP [dm6]	A	G	3.359e^-4	0.713	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16201790	2L_16201790_SNP [dm3] 2L_16201790_SNP [dm6]	G	A	3.360e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_inv
3L	419187	3L_419187_SNP [dm3] 3L_419187_SNP [dm6]	C	G	3.362e^-4	0.713	INTERGENIC
3L	10570202	3L_10570202_INS [dm3] 3L_10577102_INS [dm6]	T	CAAAAA	3.367e^-4	0.713	INTRON A2bp1
2R	10319443	2R_10319443_SNP [dm3] 2R_14431938_SNP [dm6]	A	G	3.370e^-4	0.713	SYNONYMOUS_CODING phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17735740	3R_17735740_SNP [dm3] 3R_21910018_SNP [dm6]	A	T	3.370e^-4	0.713	INTERGENIC
3L	10459132	3L_10459132_SNP [dm3] 3L_10466032_SNP [dm6]	T	G	3.372e^-4	0.713	UPSTREAM S-Lap3 INTRON S-Lap3
3L	9541088	3L_9541088_SNP [dm3] 3L_9547988_SNP [dm6]	G	C	3.374e^-4	0.713	INTRON CG42673
3R	8379931	3R_8379931_SNP [dm3] 3R_12554209_SNP [dm6]	T	G	3.379e^-4	0.713	INTRON Octbeta2R
3R	23637570	3R_23637570_SNP [dm3] 3R_27811848_SNP [dm6]	G	T	3.380e^-4	0.713	INTRON CG34353
X	19877188	X_19877188_SNP [dm3] X_19983155_SNP [dm6]	C	G	3.382e^-4	0.713	INTERGENIC
2L	8188793	2L_8188793_SNP [dm3] 2L_8188793_SNP [dm6]	C	T	3.387e^-4	0.713	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18375091	3L_18375091_SNP [dm3] 3L_18381991_SNP [dm6]	T	C	3.387e^-4	0.713	INTERGENIC
2L	13042535	2L_13042535_SNP [dm3] 2L_13042535_SNP [dm6]	G	A	3.388e^-4	0.713	INTRON CG9932
2L	17593011	2L_17593011_SNP [dm3] 2L_17593011_SNP [dm6]	T	C	3.392e^-4	0.713	UTR_5_PRIME Sytalpha UPSTREAM CG6870 INTRON Sytalpha
X	18746580	X_18746580_SNP [dm3] X_18852547_SNP [dm6]	T	C	3.407e^-4	0.713	NON_SYNONYMOUS_CODING CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4098190	X_4098190_SNP [dm3] X_4204157_SNP [dm6]	T	A	3.410e^-4	0.713	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9212854	2R_9212854_SNP [dm3] 2R_13325349_SNP [dm6]	C	G	3.411e^-4	0.713	INTERGENIC
3L	12690797	3L_12690797_SNP [dm3] 3L_12697697_SNP [dm6]	G	A	3.414e^-4	0.713	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4316624	2L_4316624_SNP [dm3] 2L_4316624_SNP [dm6]	G	A	3.415e^-4	0.713	DOWNSTREAM tutl INTRON tutl
3L	1898827	3L_1898827_DEL [dm3] 3L_1898827_DEL [dm6]	ATT	A	3.417e^-4	0.713	INTRON CG1887	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	8238525	2L_8238525_SNP [dm3] 2L_8238525_SNP [dm6]	C	G	3.417e^-4	0.713	INTRON Pvr
X	5639506	X_5639506_SNP [dm3] X_5745473_SNP [dm6]	C	T	3.438e^-4	0.713	INTRON IntS6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	4448068	2L_4448068_SNP [dm3] 2L_4448068_SNP [dm6]	A	G	3.442e^-4	0.713	SYNONYMOUS_CODING MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23655064	3R_23655064_SNP [dm3] 3R_27829342_SNP [dm6]	C	T	3.442e^-4	0.713	INTRON CG34353
2R	4869503	2R_4869503_DEL [dm3] 2R_8981998_DEL [dm6]	AACTAC	A	3.445e^-4	0.713	INTRON CG8213
3L	8357197	3L_8357197_SNP [dm3] 3L_8364097_SNP [dm6]	T	C	3.445e^-4	0.713	INTERGENIC
2R	13176138	2R_13176138_SNP [dm3] 2R_17288633_SNP [dm6]	C	T	3.449e^-4	0.713	INTRON mbl
3R	9131329	3R_9131329_SNP [dm3] 3R_13305607_SNP [dm6]	G	A	3.452e^-4	0.713	INTRON CG32473
X	20116568	X_20116568_DEL [dm3] X_20245494_DEL [dm6]	ATGTA	A	3.455e^-4	0.713	INTRON Peritrophin-A	TF binding site mE1_TFBS_HSA
4	432054	4_432054_SNP [dm3] 4_411428_SNP [dm6]	G	A	3.455e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15880303	3L_15880303_SNP [dm3] 3L_15887203_SNP [dm6]	T	A	3.471e^-4	0.713	INTRON pHCl
3L	2673748	3L_2673748_SNP [dm3] 3L_2673748_SNP [dm6]	G	A	3.479e^-4	0.713	INTRON Fife
2R	7568738	2R_7568738_SNP [dm3] 2R_11681233_SNP [dm6]	A	T	3.479e^-4	0.713	INTRON Buffy
X	17618071	X_17618071_SNP [dm3] X_17724038_SNP [dm6]	T	G	3.481e^-4	0.713	INTRON CG42684
3L	4690718	3L_4690718_SNP [dm3] 3L_4690718_SNP [dm6]	G	A	3.500e^-4	0.713	UPSTREAM CG18418 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8356882	3L_8356882_SNP [dm3] 3L_8363782_SNP [dm6]	C	G	3.505e^-4	0.713	INTERGENIC
2L	19811954	2L_19811954_SNP [dm3] 2L_19811954_SNP [dm6]	A	C	3.511e^-4	0.713	UPSTREAM snRNA:U2:38ABb INTRON sick EXON snRNA:U5:38ABa	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2094267	X_2094267_SNP [dm3] X_2200234_SNP [dm6]	C	T	3.513e^-4	0.713	SYNONYMOUS_CODING Mct1 DOWNSTREAM CR43637	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8810166	3L_8810166_SNP [dm3] 3L_8817066_SNP [dm6]	T	C	3.515e^-4	0.713	INTERGENIC
3L	4348780	3L_4348780_SNP [dm3] 3L_4348780_SNP [dm6]	C	A	3.516e^-4	0.713	DOWNSTREAM CR45156 INTRON Cip4
3R	25850804	3R_25850804_SNP [dm3] 3R_30025082_SNP [dm6]	C	T	3.523e^-4	0.713	INTRON Axn
3R	9148131	3R_9148131_SNP [dm3] 3R_13322409_SNP [dm6]	A	C	3.524e^-4	0.713	INTERGENIC
X	4242574	X_4242574_SNP [dm3] X_4348541_SNP [dm6]	G	C	3.524e^-4	0.713	INTRON norpA
2R	14962665	2R_14962665_SNP [dm3] 2R_19075160_SNP [dm6]	C	A	3.526e^-4	0.713	INTRON 5-HT1A
X	1354992	X_1354992_SNP [dm3] X_1460959_SNP [dm6]	C	T	3.533e^-4	0.713	SYNONYMOUS_CODING CG14787 UPSTREAM CG14786 DOWNSTREAM Ns3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	12661498	3L_12661498_SNP [dm3] 3L_12668398_SNP [dm6]	A	G	3.536e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10215958	2R_10215958_SNP [dm3] 2R_14328453_SNP [dm6]	C	T	3.537e^-4	0.713	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8933796	2L_8933796_SNP [dm3] 2L_8933796_SNP [dm6]	C	T	3.544e^-4	0.713	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
2R	10216018	2R_10216018_SNP [dm3] 2R_14328513_SNP [dm6]	A	G	3.545e^-4	0.713	INTRON Shroom	TF binding site mE1_TFBS_chinmo
3L	4690226	3L_4690226_SNP [dm3] 3L_4690226_SNP [dm6]	C	G	3.548e^-4	0.713	UPSTREAM CG18418 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4187641	2L_4187641_SNP [dm3] 2L_4187641_SNP [dm6]	A	G	3.553e^-4	0.713	UTR_5_PRIME CG31961 UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17156297	2L_17156297_SNP [dm3] 2L_17156297_SNP [dm6]	G	A	3.560e^-4	0.713	INTRON beat-IIIa & 1 other
2R	4869499	2R_4869499_SNP [dm3] 2R_8981994_SNP [dm6]	T	C	3.571e^-4	0.713	INTRON CG8213
X	1166197	X_1166197_SNP [dm3] X_1272164_SNP [dm6]	C	A	3.583e^-4	0.713	INTRON Atf3
X	799737	X_799737_SNP [dm3] X_905704_SNP [dm6]	T	G	3.588e^-4	0.713	INTRON CG43867
X	12244711	X_12244711_SNP [dm3] X_12350678_SNP [dm6]	C	T	3.592e^-4	0.713	INTERGENIC
X	3626565	X_3626565_SNP [dm3] X_3732532_SNP [dm6]	C	T	3.595e^-4	0.713	INTRON tlk
3R	17557712	3R_17557712_SNP [dm3] 3R_21731990_SNP [dm6]	A	G	3.597e^-4	0.713	INTERGENIC
X	9667790	X_9667790_SNP [dm3] X_9773757_SNP [dm6]	C	A	3.598e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8010924	2L_8010924_SNP [dm3] 2L_8010924_SNP [dm6]	A	T	3.606e^-4	0.713	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	14678144	2R_14678144_SNP [dm3] 2R_18790639_SNP [dm6]	G	T	3.609e^-4	0.713	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
3R	8379940	3R_8379940_SNP [dm3] 3R_12554218_SNP [dm6]	C	T	3.614e^-4	0.713	INTRON Octbeta2R
3L	421608	3L_421608_SNP [dm3] 3L_421608_SNP [dm6]	A	G	3.615e^-4	0.713	INTERGENIC
X	7974661	X_7974661_INS [dm3] X_8080628_INS [dm6]	T	TC	3.616e^-4	0.713	INTRON CG2254	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13044692	3R_13044692_SNP [dm3] 3R_17218970_SNP [dm6]	T	C	3.619e^-4	0.713	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
2R	9460636	2R_9460636_SNP [dm3] 2R_13573131_SNP [dm6]	G	C	3.619e^-4	0.713	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
2L	4179488	2L_4179488_SNP [dm3] 2L_4179488_SNP [dm6]	A	T	3.626e^-4	0.713	INTERGENIC
3L	22867806	3L_22867806_SNP [dm3] 3L_22874706_SNP [dm6]	A	T	3.628e^-4	0.713	INTRON Chro
2L	7266478	2L_7266478_SNP [dm3] 2L_7266478_SNP [dm6]	A	G	3.635e^-4	0.713	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
2L	2272988	2L_2272988_SNP [dm3] 2L_2272988_SNP [dm6]	C	T	3.638e^-4	0.713	INTRON CR43753
X	18972941	X_18972941_SNP [dm3] X_19078908_SNP [dm6]	C	G	3.643e^-4	0.713	DOWNSTREAM CG7406 INTERGENIC
3L	5616899	3L_5616899_SNP [dm3] 3L_5623799_SNP [dm6]	C	T	3.645e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8869834	2R_8869834_SNP [dm3] 2R_12982329_SNP [dm6]	G	T	3.650e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19341816	2R_19341816_SNP [dm3] 2R_23454293_SNP [dm6]	T	A	3.650e^-4	0.713	INTRON CG43795
X	14356680	X_14356680_SNP [dm3] X_14462647_SNP [dm6]	C	G	3.651e^-4	0.713	DOWNSTREAM dpr8 INTERGENIC
2L	4312939	2L_4312939_SNP [dm3] 2L_4312939_SNP [dm6]	C	T	3.655e^-4	0.713	INTRON tutl
3R	9178874	3R_9178874_SNP [dm3] 3R_13353152_SNP [dm6]	A	T	3.659e^-4	0.713	UPSTREAM mthl12 INTERGENIC
3L	3780789	3L_3780789_INS [dm3] 3L_3780789_INS [dm6]	G	GCTGCTG	3.661e^-4	0.713	CODON_INSERTION CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9129622	3R_9129622_SNP [dm3] 3R_13303900_SNP [dm6]	T	C	3.668e^-4	0.713	UPSTREAM CG32473 DOWNSTREAM CG43208 INTRON CG32473
3L	16539873	3L_16539873_SNP [dm3] 3L_16546773_SNP [dm6]	A	G	3.680e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cnc
X	12163421	X_12163421_SNP [dm3] X_12269388_SNP [dm6]	G	A	3.697e^-4	0.713	INTRON Ten-a
3R	24088927	3R_24088927_SNP [dm3] 3R_28263205_SNP [dm6]	G	T	3.701e^-4	0.713	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	10392270	3R_10392270_DEL [dm3] 3R_14566548_DEL [dm6]	TAAGACGTCTT...	T	3.702e^-4	0.713	UTR_3_PRIME CG31313 DOWNSTREAM CG31313 & 1 other
2R	18383692	2R_18383692_DEL [dm3] 2R_22496187_DEL [dm6]	CCTG	A	3.709e^-4	0.713	UTR_3_PRIME px DOWNSTREAM px
2L	2500619	2L_2500619_SNP [dm3] 2L_2500619_SNP [dm6]	T	A	3.712e^-4	0.713	INTERGENIC
3R	22163180	3R_22163180_SNP [dm3] 3R_26337458_SNP [dm6]	G	C	3.718e^-4	0.713	INTRON CG33970
2R	6735435	2R_6735435_SNP [dm3] 2R_10847930_SNP [dm6]	C	A	3.720e^-4	0.713	INTRON CG30015
3L	3945176	3L_3945176_SNP [dm3] 3L_3945176_SNP [dm6]	C	T	3.721e^-4	0.713	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	14658607	3L_14658607_SNP [dm3] 3L_14665507_SNP [dm6]	C	T	3.723e^-4	0.713	INTRON dlp	TF binding site mE1_TFBS_HSA
2L	4187645	2L_4187645_SNP [dm3] 2L_4187645_SNP [dm6]	A	G	3.726e^-4	0.713	UTR_5_PRIME CG31961 UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19847815	3R_19847815_SNP [dm3] 3R_24022093_SNP [dm6]	A	T	3.729e^-4	0.713	INTRON KrT95D
3R	11590308	3R_11590308_SNP [dm3] 3R_15764586_SNP [dm6]	G	A	3.729e^-4	0.713	INTERGENIC
2L	9150880	2L_9150880_SNP [dm3] 2L_9150880_SNP [dm6]	A	G	3.730e^-4	0.713	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5003363	3R_5003363_SNP [dm3] 3R_9177641_SNP [dm6]	T	C	3.730e^-4	0.713	NON_SYNONYMOUS_CODING CG11997 INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5616904	3L_5616904_SNP [dm3] 3L_5623804_SNP [dm6]	T	A	3.733e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7760241	3L_7760241_SNP [dm3] 3L_7767141_SNP [dm6]	A	G	3.736e^-4	0.713	DOWNSTREAM CG32371 INTRON Clk
2L	4340831	2L_4340831_DEL [dm3] 2L_4340831_DEL [dm6]	AC	A	3.749e^-4	0.713	INTRON Atet
2L	4340845	2L_4340845_SNP [dm3] 2L_4340845_SNP [dm6]	T	A	3.749e^-4	0.713	INTRON Atet
3R	22021675	3R_22021675_SNP [dm3] 3R_26195953_SNP [dm6]	A	G	3.757e^-4	0.713	INTRON CR44320
2R	17221117	2R_17221117_SNP [dm3] 2R_21333612_SNP [dm6]	T	G	3.759e^-4	0.713	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
2R	13767981	2R_13767981_SNP [dm3] 2R_17880476_SNP [dm6]	G	A	3.762e^-4	0.713	NON_SYNONYMOUS_CODING CG30110 UPSTREAM CG30325 INTRON Elk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23655739	3R_23655739_SNP [dm3] 3R_27830017_SNP [dm6]	C	T	3.776e^-4	0.713	INTRON CG34353
2L	13335219	2L_13335219_SNP [dm3] 2L_13335219_SNP [dm6]	G	T	3.782e^-4	0.713	INTERGENIC
3R	24307048	3R_24307048_INS [dm3] 3R_28481326_INS [dm6]	T	TGAAGGTACGACAGCGT...	3.788e^-4	0.713	INTERGENIC
3R	23637456	3R_23637456_SNP [dm3] 3R_27811734_SNP [dm6]	A	G	3.793e^-4	0.713	INTRON CG34353
3L	12731523	3L_12731523_SNP [dm3] 3L_12738423_SNP [dm6]	G	T	3.797e^-4	0.713	INTRON Ptp69D
3L	4341414	3L_4341414_SNP [dm3] 3L_4341414_SNP [dm6]	A	C	3.798e^-4	0.713	INTRON Cip4
2R	6795162	2R_6795162_SNP [dm3] 2R_10907657_SNP [dm6]	C	T	3.805e^-4	0.713	INTERGENIC
3R	5096429	3R_5096429_SNP [dm3] 3R_9270707_SNP [dm6]	T	C	3.809e^-4	0.713	DOWNSTREAM Vps16A INTERGENIC
2R	6794401	2R_6794401_SNP [dm3] 2R_10906896_SNP [dm6]	C	T	3.819e^-4	0.713	INTERGENIC
3L	9160022	3L_9160022_SNP [dm3] 3L_9166922_SNP [dm6]	A	T	3.820e^-4	0.713	INTRON Rdl
3R	11223158	3R_11223158_SNP [dm3] 3R_15397436_SNP [dm6]	T	G	3.825e^-4	0.713	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4167090	2L_4167090_SNP [dm3] 2L_4167090_SNP [dm6]	T	G	3.826e^-4	0.713	UPSTREAM Or24a INTERGENIC
X	12578008	X_12578008_INS [dm3] X_12683975_INS [dm6]	T	TTTTTATT	3.837e^-4	0.713	DOWNSTREAM Smr INTERGENIC
X	12578017	X_12578017_INS [dm3] X_12683984_INS [dm6]	T	TACTTT	3.837e^-4	0.713	DOWNSTREAM Smr INTERGENIC
3L	9398341	3L_9398341_SNP [dm3] 3L_9405241_SNP [dm6]	G	T	3.843e^-4	0.713	DOWNSTREAM CG4022 INTRON Cpr67B
X	18970123	X_18970123_INS [dm3] X_19076090_INS [dm6]	C	CGGCACTCTGGC...	3.846e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8330043	2L_8330043_SNP [dm3] 2L_8330043_SNP [dm6]	T	C	3.847e^-4	0.713	INTRON CG14275
2R	9461084	2R_9461084_INS [dm3] 2R_13573579_INS [dm6]	C	CC	3.852e^-4	0.713	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
3L	11221752	3L_11221752_SNP [dm3] 3L_11228652_SNP [dm6]	T	A	3.865e^-4	0.713	DOWNSTREAM CG42671 INTRON CG42671
2R	7132904	2R_7132904_SNP [dm3] 2R_11245399_SNP [dm6]	C	G	3.867e^-4	0.713	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3L	8422119	3L_8422119_SNP [dm3] 3L_8429019_SNP [dm6]	A	G	3.867e^-4	0.713	DOWNSTREAM Cbl INTRON Cbl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16365828	2R_16365828_SNP [dm3] 2R_20478323_SNP [dm6]	G	A	3.870e^-4	0.713	UTR_3_PRIME CG12484
3L	11903562	3L_11903562_SNP [dm3] 3L_11910462_SNP [dm6]	A	G	3.874e^-4	0.713	INTRON CG44837
2R	14962666	2R_14962666_SNP [dm3] 2R_19075161_SNP [dm6]	C	A	3.874e^-4	0.713	INTRON 5-HT1A
2R	16365364	2R_16365364_SNP [dm3] 2R_20477859_SNP [dm6]	C	A	3.876e^-4	0.713	INTRON CG12484
X	7003825	X_7003825_SNP [dm3] X_7109792_SNP [dm6]	T	C	3.878e^-4	0.713	UTR_5_PRIME fz4 INTRON fz4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.086e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.001446

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	8.7521	0.0126

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2422 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19081800	X_19081800_SNP [dm3] X_19187767_SNP [dm6]	A	G	3.985e^-7	0.51	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19081850	X_19081850_SNP [dm3] X_19187817_SNP [dm6]	G	A	5.436e^-7	0.51	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13466120	3L_13466120_SNP [dm3] 3L_13473020_SNP [dm6]	A	T	1.164e^-6	0.618	INTRON CG10089
3L	10217941	3L_10217941_SNP [dm3] 3L_10224841_SNP [dm6]	G	A	1.661e^-6	0.618	INTRON scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6735465	2R_6735465_SNP [dm3] 2R_10847960_SNP [dm6]	C	G	2.133e^-6	0.618	INTRON CG30015
2R	6735339	2R_6735339_SNP [dm3] 2R_10847834_SNP [dm6]	G	A	2.293e^-6	0.618	INTRON CG30015
3R	9101440	3R_9101440_SNP [dm3] 3R_13275718_SNP [dm6]	C	T	2.305e^-6	0.618	INTERGENIC
2L	18884296	2L_18884296_SNP [dm3] 2L_18884296_SNP [dm6]	G	A	3.047e^-6	0.658	INTERGENIC
3L	13705198	3L_13705198_SNP [dm3] 3L_13712098_SNP [dm6]	G	C	3.572e^-6	0.658	INTRON bru-3
3R	7783102	3R_7783102_SNP [dm3] 3R_11957380_SNP [dm6]	T	C	4.068e^-6	0.658	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	18884274	2L_18884274_SNP [dm3] 2L_18884274_SNP [dm6]	A	G	4.073e^-6	0.658	INTERGENIC
2L	10889084	2L_10889084_DEL [dm3] 2L_10889084_DEL [dm6]	TT	T	4.337e^-6	0.658	UPSTREAM CG14071 INTERGENIC
3R	7783093	3R_7783093_DEL [dm3] 3R_11957371_DEL [dm6]	ATGTA	C	4.691e^-6	0.658	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	14307854	2L_14307854_SNP [dm3] 2L_14307854_SNP [dm6]	G	A	6.327e^-6	0.658	INTRON wb
3L	13705238	3L_13705238_SNP [dm3] 3L_13712138_SNP [dm6]	C	T	6.741e^-6	0.658	INTRON bru-3
2L	6253930	2L_6253930_SNP [dm3] 2L_6253930_SNP [dm6]	A	G	6.990e^-6	0.658	INTRON Ddr	TF binding site mE1_TFBS_Trl
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	8.884e^-6	0.658	INTRON pHCl
2L	10889077	2L_10889077_SNP [dm3] 2L_10889077_SNP [dm6]	T	C	9.288e^-6	0.658	UPSTREAM CG14071 INTERGENIC
2L	6253893	2L_6253893_SNP [dm3] 2L_6253893_SNP [dm6]	T	G	9.369e^-6	0.658	INTRON Ddr	TF binding site mE1_TFBS_Trl
2L	11376856	2L_11376856_SNP [dm3] 2L_11376856_SNP [dm6]	T	A	9.624e^-6	0.658	INTERGENIC	regulatory region REDfly_CRMs
2L	18884312	2L_18884312_SNP [dm3] 2L_18884312_SNP [dm6]	A	C	9.822e^-6	0.658	INTERGENIC
2R	6735435	2R_6735435_SNP [dm3] 2R_10847930_SNP [dm6]	C	A	1.058e^-5	0.658	INTRON CG30015
3L	13466100	3L_13466100_SNP [dm3] 3L_13473000_SNP [dm6]	C	T	1.101e^-5	0.658	INTRON CG10089
3L	14068605	3L_14068605_SNP [dm3] 3L_14075505_SNP [dm6]	C	T	1.120e^-5	0.658	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
2R	10382442	2R_10382442_DEL [dm3] 2R_14494937_DEL [dm6]	CCAG	C	1.223e^-5	0.658	INTRON L
3L	10302142	3L_10302142_SNP [dm3] 3L_10309042_SNP [dm6]	A	T	1.226e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19081629	X_19081629_SNP [dm3] X_19187596_SNP [dm6]	A	C	1.232e^-5	0.658	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6253928	2L_6253928_DEL [dm3] 2L_6253928_DEL [dm6]	GG	G	1.240e^-5	0.658	INTRON Ddr	TF binding site mE1_TFBS_Trl
2R	12115251	2R_12115251_SNP [dm3] 2R_16227746_SNP [dm6]	G	T	1.274e^-5	0.658	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo
2R	13255145	2R_13255145_DEL [dm3] 2R_17367640_DEL [dm6]	TCT	T	1.279e^-5	0.658	INTRON mbl	TF binding site BDTNP1_TFBS_dl
3L	13705245	3L_13705245_SNP [dm3] 3L_13712145_SNP [dm6]	A	T	1.299e^-5	0.658	INTRON bru-3
3L	10218501	3L_10218501_SNP [dm3] 3L_10225401_SNP [dm6]	A	G	1.377e^-5	0.658	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14068595	3L_14068595_SNP [dm3] 3L_14075495_SNP [dm6]	C	T	1.483e^-5	0.658	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
3R	13465430	3R_13465430_SNP [dm3] 3R_17639708_SNP [dm6]	C	G	1.499e^-5	0.658	DOWNSTREAM CR45222 INTRON CG43175
2R	10382447	2R_10382447_SNP [dm3] 2R_14494942_SNP [dm6]	C	T	1.561e^-5	0.658	INTRON L
2L	18864375	2L_18864375_SNP [dm3] 2L_18864375_SNP [dm6]	G	A	1.594e^-5	0.658	INTRON tup
2R	13315206	2R_13315206_SNP [dm3] 2R_17427701_SNP [dm6]	G	A	1.672e^-5	0.658	UPSTREAM Mtap & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1929395	X_1929395_SNP [dm3] X_2035362_SNP [dm6]	A	G	1.703e^-5	0.658	UTR_5_PRIME Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9272078	3R_9272078_SNP [dm3] 3R_13446356_SNP [dm6]	G	A	1.718e^-5	0.658	INTERGENIC
2L	5994531	2L_5994531_SNP [dm3] 2L_5994531_SNP [dm6]	C	T	1.753e^-5	0.658	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18715458	2R_18715458_SNP [dm3] 2R_22827935_SNP [dm6]	A	C	1.842e^-5	0.658	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
2L	5992851	2L_5992851_SNP [dm3] 2L_5992851_SNP [dm6]	C	T	1.908e^-5	0.658	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18206119	2R_18206119_SNP [dm3] 2R_22318614_SNP [dm6]	G	C	1.931e^-5	0.658	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14068594	3L_14068594_SNP [dm3] 3L_14075494_SNP [dm6]	G	A	1.935e^-5	0.658	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
3R	7783223	3R_7783223_SNP [dm3] 3R_11957501_SNP [dm6]	C	A	1.966e^-5	0.658	UPSTREAM Hsp70Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	19038348	3L_19038348_SNP [dm3] 3L_19045248_SNP [dm6]	T	A	1.975e^-5	0.658	START_GAINED nkd UTR_5_PRIME nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	13494864	3L_13494864_SNP [dm3] 3L_13501764_SNP [dm6]	C	T	1.983e^-5	0.658	SYNONYMOUS_CODING Tgi UPSTREAM Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4717379	X_4717379_SNP [dm3] X_4823346_SNP [dm6]	A	C	1.983e^-5	0.658	INTERGENIC
2R	19287572	2R_19287572_SNP [dm3] 2R_23400049_SNP [dm6]	G	A	2.018e^-5	0.658	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
2R	19288016	2R_19288016_SNP [dm3] 2R_23400493_SNP [dm6]	A	G	2.018e^-5	0.658	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
3L	13705240	3L_13705240_SNP [dm3] 3L_13712140_SNP [dm6]	A	C	2.099e^-5	0.658	INTRON bru-3
3R	5196917	3R_5196917_SNP [dm3] 3R_9371195_SNP [dm6]	A	T	2.108e^-5	0.658	SYNONYMOUS_CODING FER UTR_5_PRIME FER INTRON FER
2R	19287182	2R_19287182_SNP [dm3] 2R_23399659_SNP [dm6]	T	C	2.159e^-5	0.658	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13465433	3R_13465433_SNP [dm3] 3R_17639711_SNP [dm6]	A	G	2.329e^-5	0.658	DOWNSTREAM CR45222 INTRON CG43175
3L	19033406	3L_19033406_SNP [dm3] 3L_19040306_SNP [dm6]	T	C	2.339e^-5	0.658	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18884313	2L_18884313_SNP [dm3] 2L_18884313_SNP [dm6]	G	C	2.342e^-5	0.658	INTERGENIC
3R	9100401	3R_9100401_SNP [dm3] 3R_13274679_SNP [dm6]	T	A	2.348e^-5	0.658	INTERGENIC
X	19081780	X_19081780_SNP [dm3] X_19187747_SNP [dm6]	A	G	2.376e^-5	0.658	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3943675	3L_3943675_SNP [dm3] 3L_3943675_SNP [dm6]	G	T	2.429e^-5	0.658	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	6253968	2L_6253968_SNP [dm3] 2L_6253968_SNP [dm6]	T	C	2.503e^-5	0.658	INTRON Ddr	TF binding site mE1_TFBS_Trl
3R	9095778	3R_9095778_SNP [dm3] 3R_13270056_SNP [dm6]	T	A	2.546e^-5	0.658	DOWNSTREAM Su_var_3-7 INTRON CG8449
2R	7534226	2R_7534226_SNP [dm3] 2R_11646721_SNP [dm6]	G	A	2.623e^-5	0.658	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2L	12933122	2L_12933122_SNP [dm3] 2L_12933122_SNP [dm6]	C	A	2.672e^-5	0.658	DOWNSTREAM CR44183 INTERGENIC
X	8759585	X_8759585_SNP [dm3] X_8865552_SNP [dm6]	A	G	2.679e^-5	0.658	INTRON CG12075	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	14709577	2L_14709577_SNP [dm3] 2L_14709577_SNP [dm6]	A	C	2.690e^-5	0.658	INTERGENIC
2L	13221088	2L_13221088_SNP [dm3] 2L_13221088_SNP [dm6]	C	T	2.693e^-5	0.658	SYNONYMOUS_CODING CG5705 DOWNSTREAM Ski6	TF binding site mE1_TFBS_sens
3L	901452	3L_901452_SNP [dm3] 3L_901452_SNP [dm6]	T	C	2.720e^-5	0.658	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2243292	X_2243292_SNP [dm3] X_2349259_SNP [dm6]	A	C	2.722e^-5	0.658	INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	2.751e^-5	0.658	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2L	14692978	2L_14692978_SNP [dm3] 2L_14692978_SNP [dm6]	A	G	2.845e^-5	0.658	INTERGENIC
3R	10345795	3R_10345795_SNP [dm3] 3R_14520073_SNP [dm6]	G	T	2.919e^-5	0.658	UPSTREAM Cyp313a1 INTRON Pde6
3L	13705237	3L_13705237_SNP [dm3] 3L_13712137_SNP [dm6]	A	T	2.954e^-5	0.658	INTRON bru-3
3L	6538327	3L_6538327_SNP [dm3] 3L_6545227_SNP [dm6]	G	A	3.057e^-5	0.658	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_sens
2R	10365665	2R_10365665_SNP [dm3] 2R_14478160_SNP [dm6]	T	G	3.058e^-5	0.658	DOWNSTREAM CR44462 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7902556	3L_7902556_DEL [dm3] 3L_7909456_DEL [dm6]	TTCAAACAAGA...	T	3.083e^-5	0.658	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13466650	3L_13466650_SNP [dm3] 3L_13473550_SNP [dm6]	G	T	3.140e^-5	0.658	INTRON CG10089
X	2180658	X_2180658_INS [dm3] X_2286625_INS [dm6]	C	CTC	3.195e^-5	0.658	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11376839	2L_11376839_SNP [dm3] 2L_11376839_SNP [dm6]	A	T	3.212e^-5	0.658	INTERGENIC	regulatory region REDfly_CRMs
X	19077801	X_19077801_SNP [dm3] X_19183768_SNP [dm6]	T	G	3.257e^-5	0.658	UPSTREAM CG33253 INTRON CG33253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17125023	2R_17125023_SNP [dm3] 2R_21237518_SNP [dm6]	A	T	3.314e^-5	0.658	INTRON ASPP
2L	9681453	2L_9681453_SNP [dm3] 2L_9681453_SNP [dm6]	T	C	3.340e^-5	0.658	DOWNSTREAM Pka-C1 INTERGENIC
3R	9104609	3R_9104609_SNP [dm3] 3R_13278887_SNP [dm6]	A	C	3.379e^-5	0.658	UPSTREAM CG8630 INTERGENIC
2L	16363235	2L_16363235_SNP [dm3] 2L_16363235_SNP [dm6]	C	T	3.504e^-5	0.658	INTERGENIC
3L	13705264	3L_13705264_SNP [dm3] 3L_13712164_SNP [dm6]	A	G	3.507e^-5	0.658	INTRON bru-3
2L	7957301	2L_7957301_SNP [dm3] 2L_7957301_SNP [dm6]	A	T	3.508e^-5	0.658	INTRON Snoo
2L	14710039	2L_14710039_SNP [dm3] 2L_14710039_SNP [dm6]	A	G	3.526e^-5	0.658	INTERGENIC
2R	15310608	2R_15310608_SNP [dm3] 2R_19423103_SNP [dm6]	C	T	3.549e^-5	0.658	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	19081887	X_19081887_SNP [dm3] X_19187854_SNP [dm6]	G	A	3.592e^-5	0.658	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10375675	3R_10375675_SNP [dm3] 3R_14549953_SNP [dm6]	C	T	3.611e^-5	0.658	INTRON Pde6
3R	21734362	3R_21734362_SNP [dm3] 3R_25908640_SNP [dm6]	G	C	3.648e^-5	0.658	INTRON CG42235
2L	7957272	2L_7957272_SNP [dm3] 2L_7957272_SNP [dm6]	A	T	3.662e^-5	0.658	INTRON Snoo
2R	18723941	2R_18723941_SNP [dm3] 2R_22836418_SNP [dm6]	C	T	3.749e^-5	0.658	SYNONYMOUS_CODING CG12490 UPSTREAM CG9825
2L	13909179	2L_13909179_SNP [dm3] 2L_13909179_SNP [dm6]	A	C	3.752e^-5	0.658	UTR_3_PRIME Ance UPSTREAM Ance-2 DOWNSTREAM Ance
2L	12718365	2L_12718365_SNP [dm3] 2L_12718365_SNP [dm6]	T	G	3.758e^-5	0.658	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
3L	13494861	3L_13494861_SNP [dm3] 3L_13501761_SNP [dm6]	T	A	3.761e^-5	0.658	SYNONYMOUS_CODING Tgi UPSTREAM Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12718363	2L_12718363_SNP [dm3] 2L_12718363_SNP [dm6]	G	A	3.797e^-5	0.658	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
X	1667188	X_1667188_SNP [dm3] X_1773155_SNP [dm6]	A	G	3.862e^-5	0.658	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14692996	2L_14692996_SNP [dm3] 2L_14692996_SNP [dm6]	G	T	3.954e^-5	0.658	INTERGENIC
2R	11730628	2R_11730628_SNP [dm3] 2R_15843123_SNP [dm6]	G	T	3.957e^-5	0.658	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	7957296	2L_7957296_SNP [dm3] 2L_7957296_SNP [dm6]	G	A	4.007e^-5	0.658	INTRON Snoo
3R	20206829	3R_20206829_SNP [dm3] 3R_24381107_SNP [dm6]	G	T	4.057e^-5	0.658	INTERGENIC
3L	14068732	3L_14068732_SNP [dm3] 3L_14075632_SNP [dm6]	T	G	4.072e^-5	0.658	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
2R	9213759	2R_9213759_SNP [dm3] 2R_13326254_SNP [dm6]	G	T	4.072e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8064497	2L_8064497_SNP [dm3] 2L_8064497_SNP [dm6]	A	G	4.087e^-5	0.658	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13467287	3L_13467287_SNP [dm3] 3L_13474187_SNP [dm6]	C	G	4.090e^-5	0.658	INTRON CG10089
3L	13467291	3L_13467291_SNP [dm3] 3L_13474191_SNP [dm6]	G	A	4.090e^-5	0.658	INTRON CG10089
3L	5941636	3L_5941636_SNP [dm3] 3L_5948536_SNP [dm6]	C	T	4.091e^-5	0.658	INTRON CG33993
3R	10423063	3R_10423063_SNP [dm3] 3R_14597341_SNP [dm6]	A	C	4.113e^-5	0.658	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	14709905	2L_14709905_SNP [dm3] 2L_14709905_SNP [dm6]	G	A	4.144e^-5	0.658	INTERGENIC
X	19081636	X_19081636_SNP [dm3] X_19187603_SNP [dm6]	G	A	4.160e^-5	0.658	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13783200	3L_13783200_SNP [dm3] 3L_13790100_SNP [dm6]	C	T	4.164e^-5	0.658	INTRON bru-3
3L	12136299	3L_12136299_SNP [dm3] 3L_12143199_SNP [dm6]	C	A	4.179e^-5	0.658	UTR_3_PRIME RhoGAP68F DOWNSTREAM CG5642
2L	5102155	2L_5102155_SNP [dm3] 2L_5102155_SNP [dm6]	G	A	4.237e^-5	0.658	INTRON Msp300
2R	15313021	2R_15313021_SNP [dm3] 2R_19425516_SNP [dm6]	G	C	4.239e^-5	0.658	UPSTREAM hts INTRON CalpA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18864355	2L_18864355_SNP [dm3] 2L_18864355_SNP [dm6]	T	A	4.320e^-5	0.658	INTRON tup
3L	14603860	3L_14603860_SNP [dm3] 3L_14610760_SNP [dm6]	T	C	4.386e^-5	0.658	INTERGENIC
2L	14320479	2L_14320479_SNP [dm3] 2L_14320479_SNP [dm6]	C	T	4.398e^-5	0.658	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna
2R	7568491	2R_7568491_SNP [dm3] 2R_11680986_SNP [dm6]	T	C	4.455e^-5	0.658	INTRON Buffy
3L	3135266	3L_3135266_SNP [dm3] 3L_3135266_SNP [dm6]	T	G	4.474e^-5	0.658	INTRON CG11537
2R	8725799	2R_8725799_SNP [dm3] 2R_12838294_SNP [dm6]	A	G	4.644e^-5	0.658	DOWNSTREAM CR44453 INTERGENIC	TF binding site mE1_TFBS_HSA
X	19081619	X_19081619_SNP [dm3] X_19187586_SNP [dm6]	G	A	4.646e^-5	0.658	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8625563	2L_8625563_SNP [dm3] 2L_8625563_SNP [dm6]	T	C	4.675e^-5	0.658	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20161110	2R_20161110_SNP [dm3] 2R_24273587_SNP [dm6]	C	G	4.738e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	18480489	3R_18480489_SNP [dm3] 3R_22654767_SNP [dm6]	C	A	4.746e^-5	0.658	INTRON CG45058
2L	1273519	2L_1273519_SNP [dm3] 2L_1273519_SNP [dm6]	C	T	4.756e^-5	0.658	INTRON robo3
3R	13832870	3R_13832870_SNP [dm3] 3R_18007148_SNP [dm6]	A	T	4.763e^-5	0.658	INTRON cpo	TF binding site BDTNP1_TFBS_dl
2R	18210082	2R_18210082_SNP [dm3] 2R_22322577_SNP [dm6]	C	T	4.776e^-5	0.658	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19548149	2R_19548149_SNP [dm3] 2R_23660626_SNP [dm6]	T	C	4.848e^-5	0.658	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	9105621	3R_9105621_SNP [dm3] 3R_13279899_SNP [dm6]	C	G	4.863e^-5	0.658	UTR_5_PRIME CG8630
X	10220610	X_10220610_SNP [dm3] X_10326577_SNP [dm6]	A	G	4.981e^-5	0.658	UTR_5_PRIME CG2909 UPSTREAM alpha-Man-I	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14692995	2L_14692995_SNP [dm3] 2L_14692995_SNP [dm6]	G	A	5.010e^-5	0.658	INTERGENIC
3L	13467385	3L_13467385_SNP [dm3] 3L_13474285_SNP [dm6]	T	C	5.030e^-5	0.658	INTRON CG10089
X	2243338	X_2243338_SNP [dm3] X_2349305_SNP [dm6]	T	G	5.048e^-5	0.658	INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16816369	3L_16816369_INS [dm3] 3L_16823269_INS [dm6]	G	GGCTAATCATAAAAGG...	5.061e^-5	0.658	INTRON CG13024	TF binding site mE1_TFBS_inv
X	10220637	X_10220637_SNP [dm3] X_10326604_SNP [dm6]	T	C	5.075e^-5	0.658	UTR_5_PRIME CG2909 UPSTREAM alpha-Man-I	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12402189	2R_12402189_SNP [dm3] 2R_16514684_SNP [dm6]	C	G	5.244e^-5	0.658	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9104576	3R_9104576_SNP [dm3] 3R_13278854_SNP [dm6]	A	G	5.352e^-5	0.658	UPSTREAM CG8630 INTERGENIC
2R	19341816	2R_19341816_SNP [dm3] 2R_23454293_SNP [dm6]	T	A	5.392e^-5	0.658	INTRON CG43795
2L	12514656	2L_12514656_SNP [dm3] 2L_12514656_SNP [dm6]	T	A	5.419e^-5	0.658	INTRON bun
2R	4684800	2R_4684800_INS [dm3] 2R_8797295_INS [dm6]	T	TGTATGT	5.459e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10188890	2L_10188890_SNP [dm3] 2L_10188890_SNP [dm6]	A	G	5.470e^-5	0.658	SYNONYMOUS_CODING Sur DOWNSTREAM CG31874
3R	9098178	3R_9098178_SNP [dm3] 3R_13272456_SNP [dm6]	C	A	5.583e^-5	0.658	UPSTREAM CG8449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14474068	3L_14474068_SNP [dm3] 3L_14480968_SNP [dm6]	T	C	5.588e^-5	0.658	INTRON bbg
2R	10365607	2R_10365607_SNP [dm3] 2R_14478102_SNP [dm6]	T	C	5.607e^-5	0.658	DOWNSTREAM CR44462 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6693428	3L_6693428_SNP [dm3] 3L_6700328_SNP [dm6]	T	C	5.636e^-5	0.658	INTRON SP1173
2R	4922139	2R_4922139_SNP [dm3] 2R_9034634_SNP [dm6]	C	T	5.653e^-5	0.658	INTERGENIC
2L	4005352	2L_4005352_SNP [dm3] 2L_4005352_SNP [dm6]	A	G	5.697e^-5	0.658	SYNONYMOUS_CODING CG15422 UPSTREAM CG15423 DOWNSTREAM CG34176
2R	10214427	2R_10214427_SNP [dm3] 2R_14326922_SNP [dm6]	T	C	5.724e^-5	0.658	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
3L	13467278	3L_13467278_SNP [dm3] 3L_13474178_SNP [dm6]	T	A	5.735e^-5	0.658	INTRON CG10089
2L	14319218	2L_14319218_SNP [dm3] 2L_14319218_SNP [dm6]	G	T	5.762e^-5	0.658	INTRON wb
3R	5201950	3R_5201950_MNP [dm3] 3R_9376228_MNP [dm6]	TCA	AAT	5.789e^-5	0.658	INTRON FER	TF binding site BDTNP1_TFBS_twi
3R	9103431	3R_9103431_SNP [dm3] 3R_13277709_SNP [dm6]	A	G	5.820e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16482160	2R_16482160_SNP [dm3] 2R_20594655_SNP [dm6]	G	A	5.862e^-5	0.658	INTRON bl
2R	12491431	2R_12491431_SNP [dm3] 2R_16603926_SNP [dm6]	A	C	5.874e^-5	0.658	INTRON CG8303
2L	5534655	2L_5534655_SNP [dm3] 2L_5534655_SNP [dm6]	C	T	5.891e^-5	0.658	SYNONYMOUS_CODING Cap-D3	TF binding site mE1_TFBS_HSA
3L	15974109	3L_15974109_SNP [dm3] 3L_15981009_SNP [dm6]	A	G	5.947e^-5	0.658	INTRON brm & 1 other	TF binding site mE1_TFBS_cad
3R	9111465	3R_9111465_SNP [dm3] 3R_13285743_SNP [dm6]	C	A	6.010e^-5	0.658	INTRON CG15888
2L	3277802	2L_3277802_SNP [dm3] 2L_3277802_SNP [dm6]	C	G	6.080e^-5	0.658	INTRON CG3332
X	1270007	X_1270007_SNP [dm3] X_1375974_SNP [dm6]	G	A	6.080e^-5	0.658	SYNONYMOUS_CODING AMPKalpha DOWNSTREAM ssx	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11376664	2L_11376664_SNP [dm3] 2L_11376664_SNP [dm6]	C	A	6.113e^-5	0.658	INTERGENIC	regulatory region REDfly_CRMs
3L	6705592	3L_6705592_SNP [dm3] 3L_6712492_SNP [dm6]	C	A	6.159e^-5	0.658	DOWNSTREAM ple INTERGENIC
3R	10362015	3R_10362015_SNP [dm3] 3R_14536293_SNP [dm6]	C	T	6.183e^-5	0.658	INTRON Pde6
2L	14308512	2L_14308512_SNP [dm3] 2L_14308512_SNP [dm6]	C	T	6.198e^-5	0.658	NON_SYNONYMOUS_CODING wb INTRON wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	18909112	2L_18909112_SNP [dm3] 2L_18909112_SNP [dm6]	T	C	6.225e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	5453026	X_5453026_SNP [dm3] X_5558993_SNP [dm6]	A	C	6.325e^-5	0.658	INTRON Vsx2
3R	14027591	3R_14027591_SNP [dm3] 3R_18201869_SNP [dm6]	C	T	6.361e^-5	0.658	INTRON CG7985
2R	9491410	2R_9491410_DEL [dm3] 2R_13603905_DEL [dm6]	CCCC	C	6.396e^-5	0.658	DOWNSTREAM CG34236 INTERGENIC
2L	14318711	2L_14318711_MNP [dm3] 2L_14318711_MNP [dm6]	CCA	TTT	6.419e^-5	0.658	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	15310575	2R_15310575_SNP [dm3] 2R_19423070_SNP [dm6]	G	A	6.424e^-5	0.658	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	8872787	2R_8872787_SNP [dm3] 2R_12985282_SNP [dm6]	A	G	6.503e^-5	0.658	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	6801194	3R_6801194_SNP [dm3] 3R_10975472_SNP [dm6]	T	G	6.549e^-5	0.658	INTRON CG34114
2R	13315173	2R_13315173_SNP [dm3] 2R_17427668_SNP [dm6]	T	A	6.560e^-5	0.658	UPSTREAM Mtap & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13465456	3L_13465456_SNP [dm3] 3L_13472356_SNP [dm6]	T	C	6.594e^-5	0.658	INTRON CG10089
2R	6735353	2R_6735353_SNP [dm3] 2R_10847848_SNP [dm6]	G	A	6.701e^-5	0.658	INTRON CG30015
X	15541498	X_15541498_SNP [dm3] X_15647465_SNP [dm6]	T	C	6.704e^-5	0.658	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16940851	3R_16940851_SNP [dm3] 3R_21115129_SNP [dm6]	T	C	6.712e^-5	0.658	INTRON Rab11
3R	16940863	3R_16940863_SNP [dm3] 3R_21115141_SNP [dm6]	T	C	6.712e^-5	0.658	INTRON Rab11
2L	14320473	2L_14320473_SNP [dm3] 2L_14320473_SNP [dm6]	G	C	6.714e^-5	0.658	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna
3R	13396620	3R_13396620_SNP [dm3] 3R_17570898_SNP [dm6]	G	A	6.756e^-5	0.658	INTERGENIC
X	20860176	X_20860176_SNP [dm3] X_20989149_SNP [dm6]	G	T	6.805e^-5	0.658	INTERGENIC
3R	20209970	3R_20209970_SNP [dm3] 3R_24384248_SNP [dm6]	A	T	6.852e^-5	0.658	SYNONYMOUS_CODING CG17780
2L	14320530	2L_14320530_SNP [dm3] 2L_14320530_SNP [dm6]	C	T	6.917e^-5	0.658	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna
3L	16816355	3L_16816355_SNP [dm3] 3L_16823255_SNP [dm6]	G	A	6.920e^-5	0.658	INTRON CG13024	TF binding site mE1_TFBS_inv
X	9778235	X_9778235_SNP [dm3] X_9884202_SNP [dm6]	A	T	6.978e^-5	0.658	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
2L	13824386	2L_13824386_SNP [dm3] 2L_13824386_SNP [dm6]	C	A	7.005e^-5	0.658	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6538549	3L_6538549_SNP [dm3] 3L_6545449_SNP [dm6]	A	G	7.026e^-5	0.658	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14516194	X_14516194_DEL [dm3] X_14622161_DEL [dm6]	CAC	C	7.050e^-5	0.658	INTRON NetA
3R	9108703	3R_9108703_SNP [dm3] 3R_13282981_SNP [dm6]	T	C	7.092e^-5	0.658	SYNONYMOUS_CODING CG8630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23339779	3R_23339779_SNP [dm3] 3R_27514057_SNP [dm6]	A	G	7.119e^-5	0.658	INTERGENIC
X	4896302	X_4896302_SNP [dm3] X_5002269_SNP [dm6]	C	A	7.178e^-5	0.658	INTRON CR44833	regulatory region REDfly_CRMs
2R	16454714	2R_16454714_SNP [dm3] 2R_20567209_SNP [dm6]	C	A	7.180e^-5	0.658	INTRON qsm
3R	23345533	3R_23345533_SNP [dm3] 3R_27519811_SNP [dm6]	A	G	7.186e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15758683	2L_15758683_SNP [dm3] 2L_15758683_SNP [dm6]	T	C	7.188e^-5	0.658	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12933129	2L_12933129_SNP [dm3] 2L_12933129_SNP [dm6]	A	G	7.192e^-5	0.658	DOWNSTREAM CR44183 INTERGENIC
3L	11436006	3L_11436006_SNP [dm3] 3L_11442906_SNP [dm6]	G	T	7.311e^-5	0.658	INTERGENIC
2L	12910883	2L_12910883_SNP [dm3] 2L_12910883_SNP [dm6]	T	G	7.322e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7905006	3L_7905006_SNP [dm3] 3L_7911906_SNP [dm6]	G	A	7.327e^-5	0.658	UTR_5_PRIME pbl UPSTREAM CG8281	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	14709954	2L_14709954_SNP [dm3] 2L_14709954_SNP [dm6]	A	G	7.339e^-5	0.658	INTERGENIC
2R	11767137	2R_11767137_SNP [dm3] 2R_15879632_SNP [dm6]	G	A	7.342e^-5	0.658	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17125021	2R_17125021_SNP [dm3] 2R_21237516_SNP [dm6]	A	C	7.358e^-5	0.658	INTRON ASPP
2R	12501693	2R_12501693_SNP [dm3] 2R_16614188_SNP [dm6]	A	T	7.366e^-5	0.658	INTRON CG5065
2R	10338620	2R_10338620_SNP [dm3] 2R_14451115_SNP [dm6]	G	A	7.386e^-5	0.658	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1932902	2L_1932902_SNP [dm3] 2L_1932902_SNP [dm6]	G	T	7.397e^-5	0.658	INTRON CG7337
3R	9271115	3R_9271115_SNP [dm3] 3R_13445393_SNP [dm6]	A	G	7.437e^-5	0.658	INTERGENIC
3L	14631924	3L_14631924_SNP [dm3] 3L_14638824_SNP [dm6]	G	A	7.466e^-5	0.658	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14709896	2L_14709896_SNP [dm3] 2L_14709896_SNP [dm6]	C	T	7.540e^-5	0.658	INTERGENIC
3R	6801036	3R_6801036_SNP [dm3] 3R_10975314_SNP [dm6]	G	T	7.579e^-5	0.658	INTRON CG34114
2L	14709880	2L_14709880_SNP [dm3] 2L_14709880_SNP [dm6]	A	G	7.587e^-5	0.658	INTERGENIC
2R	9694119	2R_9694119_SNP [dm3] 2R_13806614_SNP [dm6]	C	A	7.661e^-5	0.658	SYNONYMOUS_CODING stj
X	13163623	X_13163623_SNP [dm3] X_13269590_SNP [dm6]	T	C	7.680e^-5	0.658	INTRON HDAC4
X	19723694	X_19723694_SNP [dm3] X_19829661_SNP [dm6]	G	A	7.706e^-5	0.658	DOWNSTREAM pico INTERGENIC
X	13443077	X_13443077_SNP [dm3] X_13549044_SNP [dm6]	G	T	7.706e^-5	0.658	INTERGENIC
3R	9272036	3R_9272036_SNP [dm3] 3R_13446314_SNP [dm6]	T	A	7.756e^-5	0.658	INTERGENIC
2L	6253991	2L_6253991_SNP [dm3] 2L_6253991_SNP [dm6]	G	A	7.786e^-5	0.658	INTRON Ddr	TF binding site mE1_TFBS_Trl
2R	6735446	2R_6735446_SNP [dm3] 2R_10847941_SNP [dm6]	G	A	7.845e^-5	0.658	INTRON CG30015
2R	10441380	2R_10441380_SNP [dm3] 2R_14553875_SNP [dm6]	G	A	7.907e^-5	0.658	NON_SYNONYMOUS_CODING CG43919 INTRON ttv
2L	14318684	2L_14318684_SNP [dm3] 2L_14318684_SNP [dm6]	G	A	8.001e^-5	0.658	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14318696	2L_14318696_SNP [dm3] 2L_14318696_SNP [dm6]	G	A	8.001e^-5	0.658	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13466841	3L_13466841_SNP [dm3] 3L_13473741_SNP [dm6]	A	G	8.012e^-5	0.658	INTRON CG10089
3L	12947254	3L_12947254_SNP [dm3] 3L_12954154_SNP [dm6]	A	C	8.083e^-5	0.658	SYNONYMOUS_CODING CG10752	TF binding site mE1_TFBS_HSA
3L	13108808	3L_13108808_SNP [dm3] 3L_13115708_SNP [dm6]	G	A	8.119e^-5	0.658	SYNONYMOUS_CODING trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	9104608	3R_9104608_SNP [dm3] 3R_13278886_SNP [dm6]	A	C	8.120e^-5	0.658	UPSTREAM CG8630 INTERGENIC
3L	10013048	3L_10013048_SNP [dm3] 3L_10019948_SNP [dm6]	T	A	8.141e^-5	0.658	INTRON dpr6
2L	12514619	2L_12514619_SNP [dm3] 2L_12514619_SNP [dm6]	G	T	8.154e^-5	0.658	INTRON bun
3L	5287714	3L_5287714_SNP [dm3] 3L_5294614_SNP [dm6]	G	A	8.155e^-5	0.658	INTERGENIC
2L	14318733	2L_14318733_INS [dm3] 2L_14318733_INS [dm6]	A	AGTGCGAA	8.183e^-5	0.658	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10895700	3R_10895700_SNP [dm3] 3R_15069978_SNP [dm6]	T	G	8.202e^-5	0.658	INTRON dpr9
2R	3671000	2R_3671000_SNP [dm3] 2R_7783495_SNP [dm6]	G	A	8.244e^-5	0.658	SYNONYMOUS_CODING cn UPSTREAM CG30497 & 1 other EXON CR45108	TF binding site BDTNP1_TFBS_dl
3L	1524630	3L_1524630_SNP [dm3] 3L_1524630_SNP [dm6]	C	G	8.256e^-5	0.658	INTRON CG12090
2R	7534217	2R_7534217_SNP [dm3] 2R_11646712_SNP [dm6]	T	A	8.299e^-5	0.658	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
X	2243355	X_2243355_SNP [dm3] X_2349322_SNP [dm6]	C	A	8.348e^-5	0.658	SPLICE_SITE_REGION ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13466380	3L_13466380_SNP [dm3] 3L_13473280_SNP [dm6]	C	T	8.349e^-5	0.658	INTRON CG10089
3R	24185991	3R_24185991_SNP [dm3] 3R_28360269_SNP [dm6]	A	T	8.359e^-5	0.658	INTERGENIC
2L	14710042	2L_14710042_DEL [dm3] 2L_14710042_DEL [dm6]	GTG	G	8.369e^-5	0.658	INTERGENIC
3L	19262452	3L_19262452_SNP [dm3] 3L_19269352_SNP [dm6]	A	T	8.388e^-5	0.658	UTR_5_PRIME CG14085 UPSTREAM CG9629 DOWNSTREAM CG14088
X	9778241	X_9778241_SNP [dm3] X_9884208_SNP [dm6]	A	T	8.406e^-5	0.658	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
3R	4250008	3R_4250008_SNP [dm3] 3R_8424286_SNP [dm6]	G	A	8.414e^-5	0.658	INTRON CG45263
2R	16427338	2R_16427338_SNP [dm3] 2R_20539833_SNP [dm6]	T	G	8.532e^-5	0.658	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15113010	X_15113010_INS [dm3] X_15218977_INS [dm6]	T	TT	8.581e^-5	0.658	INTERGENIC
2L	3755809	2L_3755809_SNP [dm3] 2L_3755809_SNP [dm6]	C	A	8.588e^-5	0.658	INTERGENIC
2L	6130306	2L_6130306_SNP [dm3] 2L_6130306_SNP [dm6]	C	G	8.641e^-5	0.658	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	10020124	2R_10020124_SNP [dm3] 2R_14132619_SNP [dm6]	C	T	8.672e^-5	0.658	INTRON Prosap	TF binding site mE1_TFBS_inv
3R	9106637	3R_9106637_SNP [dm3] 3R_13280915_SNP [dm6]	T	A	8.703e^-5	0.658	INTRON CG8630
3L	20876137	3L_20876137_SNP [dm3] 3L_20883037_SNP [dm6]	T	A	8.717e^-5	0.658	INTRON CG32432
2L	1932899	2L_1932899_DEL [dm3] 2L_1932899_DEL [dm6]	AA	A	8.724e^-5	0.658	INTRON CG7337
X	14516215	X_14516215_DEL [dm3] X_14622182_DEL [dm6]	GAATG	G	8.753e^-5	0.658	INTRON NetA
3R	9109985	3R_9109985_INS [dm3] 3R_13284263_INS [dm6]	T	TATTAATTCT	8.771e^-5	0.658	UTR_3_PRIME CG8630 DOWNSTREAM CG15888	TF binding site mE1_TFBS_cad
3L	2873904	3L_2873904_SNP [dm3] 3L_2873904_SNP [dm6]	C	T	8.795e^-5	0.658	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9180519	2L_9180519_SNP [dm3] 2L_9180519_SNP [dm6]	T	A	8.822e^-5	0.658	INTRON tai
2R	17125028	2R_17125028_SNP [dm3] 2R_21237523_SNP [dm6]	T	G	8.839e^-5	0.658	INTRON ASPP
2L	15123512	2L_15123512_SNP [dm3] 2L_15123512_SNP [dm6]	G	A	8.839e^-5	0.658	INTERGENIC
2L	3260438	2L_3260438_SNP [dm3] 2L_3260438_SNP [dm6]	C	T	8.854e^-5	0.658	DOWNSTREAM CR45337 INTERGENIC
3L	14068816	3L_14068816_SNP [dm3] 3L_14075716_SNP [dm6]	G	C	8.882e^-5	0.658	NON_SYNONYMOUS_CODING Pex1 UPSTREAM btl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1273527	2L_1273527_SNP [dm3] 2L_1273527_SNP [dm6]	T	A	9.068e^-5	0.66	INTRON robo3
X	10112225	X_10112225_SNP [dm3] X_10218192_SNP [dm6]	G	A	9.096e^-5	0.66	SYNONYMOUS_CODING CG15308 DOWNSTREAM l_1_G0230 EXON CR45629
3L	19448169	3L_19448169_SNP [dm3] 3L_19455069_SNP [dm6]	C	T	9.099e^-5	0.66	EXON CR45434	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19258698	2R_19258698_SNP [dm3] 2R_23371175_SNP [dm6]	A	C	9.100e^-5	0.66	NON_SYNONYMOUS_CODING Ice1 DOWNSTREAM Golgin245
2R	9211273	2R_9211273_INS [dm3] 2R_13323768_INS [dm6]	C	CC	9.176e^-5	0.66	INTERGENIC
X	20681288	X_20681288_SNP [dm3] X_20810261_SNP [dm6]	T	G	9.226e^-5	0.66	INTRON shakB
3L	14603845	3L_14603845_SNP [dm3] 3L_14610745_SNP [dm6]	T	G	9.248e^-5	0.66	INTERGENIC
2R	15310636	2R_15310636_SNP [dm3] 2R_19423131_SNP [dm6]	T	A	9.271e^-5	0.66	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	4701564	3L_4701564_SNP [dm3] 3L_4701564_SNP [dm6]	A	T	9.295e^-5	0.66	INTRON RhoGEF64C
2L	4109579	2L_4109579_SNP [dm3] 2L_4109579_SNP [dm6]	T	A	9.298e^-5	0.66	INTRON ed
X	13210621	X_13210621_SNP [dm3] X_13316588_SNP [dm6]	C	G	9.299e^-5	0.66	INTRON IP3K2
3R	9111449	3R_9111449_SNP [dm3] 3R_13285727_SNP [dm6]	A	T	9.350e^-5	0.66	INTRON CG15888
X	1999150	X_1999150_SNP [dm3] X_2105117_SNP [dm6]	C	T	9.357e^-5	0.66	INTRON csw
2R	8875304	2R_8875304_DEL [dm3] 2R_12987799_DEL [dm6]	TGCTGT	T	9.534e^-5	0.67	INTERGENIC
2R	10026039	2R_10026039_SNP [dm3] 2R_14138534_SNP [dm6]	G	T	9.588e^-5	0.671	INTRON Prosap
3R	3552803	3R_3552803_SNP [dm3] 3R_7727081_SNP [dm6]	G	T	9.705e^-5	0.672	INTERGENIC
2R	14470573	2R_14470573_SNP [dm3] 2R_18583068_SNP [dm6]	G	A	9.743e^-5	0.672	UTR_5_PRIME GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15758680	2L_15758680_SNP [dm3] 2L_15758680_SNP [dm6]	G	A	9.785e^-5	0.672	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6735438	2R_6735438_SNP [dm3] 2R_10847933_SNP [dm6]	C	T	9.793e^-5	0.672	INTRON CG30015
3L	17679401	3L_17679401_SNP [dm3] 3L_17686301_SNP [dm6]	T	A	9.794e^-5	0.672	INTERGENIC
2R	13123695	2R_13123695_SNP [dm3] 2R_17236190_SNP [dm6]	T	A	9.819e^-5	0.672	INTRON mbl
2R	8869834	2R_8869834_SNP [dm3] 2R_12982329_SNP [dm6]	G	T	9.899e^-5	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1228467	2L_1228467_SNP [dm3] 2L_1228467_SNP [dm6]	T	C	9.962e^-5	0.675	SPLICE_SITE_REGION CG42329 SYNONYMOUS_CODING CG42329
2L	6253913	2L_6253913_SNP [dm3] 2L_6253913_SNP [dm6]	G	T	9.973e^-5	0.675	INTRON Ddr	TF binding site mE1_TFBS_Trl
3L	19104187	3L_19104187_SNP [dm3] 3L_19111087_SNP [dm6]	A	T	1.013e^-4	0.683	INTRON CG14082
2L	12478896	2L_12478896_SNP [dm3] 2L_12478896_SNP [dm6]	A	T	1.017e^-4	0.684	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2180666	X_2180666_SNP [dm3] X_2286633_SNP [dm6]	C	T	1.023e^-4	0.685	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14307902	2L_14307902_SNP [dm3] 2L_14307902_SNP [dm6]	G	C	1.032e^-4	0.686	INTRON wb
3L	11435993	3L_11435993_SNP [dm3] 3L_11442893_SNP [dm6]	T	A	1.033e^-4	0.686	INTERGENIC
3R	9105550	3R_9105550_SNP [dm3] 3R_13279828_SNP [dm6]	T	C	1.036e^-4	0.686	UTR_5_PRIME CG8630
3L	12850717	3L_12850717_SNP [dm3] 3L_12857617_SNP [dm6]	C	A	1.063e^-4	0.688	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	2535504	2R_2535504_SNP [dm3] 2R_6647999_SNP [dm6]	G	A	1.065e^-4	0.688	UPSTREAM debcl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12491430	2R_12491430_SNP [dm3] 2R_16603925_SNP [dm6]	G	A	1.071e^-4	0.688	INTRON CG8303
2L	14318892	2L_14318892_SNP [dm3] 2L_14318892_SNP [dm6]	C	T	1.074e^-4	0.688	INTRON wb	TF binding site mE1_TFBS_bab1
3R	24627414	3R_24627414_SNP [dm3] 3R_28801692_SNP [dm6]	T	C	1.075e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2646952	3L_2646952_SNP [dm3] 3L_2646952_SNP [dm6]	A	T	1.086e^-4	0.688	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3R	9145499	3R_9145499_SNP [dm3] 3R_13319777_SNP [dm6]	A	G	1.089e^-4	0.688	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2018202	3L_2018202_SNP [dm3] 3L_2018202_SNP [dm6]	T	C	1.090e^-4	0.688	INTERGENIC
3R	10358096	3R_10358096_SNP [dm3] 3R_14532374_SNP [dm6]	G	A	1.090e^-4	0.688	INTRON Pde6
2L	13740426	2L_13740426_SNP [dm3] 2L_13740426_SNP [dm6]	A	G	1.095e^-4	0.688	INTERGENIC
2L	16988951	2L_16988951_SNP [dm3] 2L_16988951_SNP [dm6]	G	A	1.099e^-4	0.688	INTRON beat-IIIb
2L	14693482	2L_14693482_SNP [dm3] 2L_14693482_SNP [dm6]	T	G	1.106e^-4	0.688	INTERGENIC
3R	16767204	3R_16767204_SNP [dm3] 3R_20941482_SNP [dm6]	C	A	1.107e^-4	0.688	INTRON CG31191
3R	9027931	3R_9027931_SNP [dm3] 3R_13202209_SNP [dm6]	A	T	1.121e^-4	0.688	INTERGENIC
3R	13974635	3R_13974635_SNP [dm3] 3R_18148913_SNP [dm6]	C	T	1.121e^-4	0.688	INTERGENIC
3L	2018223	3L_2018223_SNP [dm3] 3L_2018223_SNP [dm6]	T	A	1.122e^-4	0.688	INTERGENIC
2R	9215785	2R_9215785_SNP [dm3] 2R_13328280_SNP [dm6]	T	G	1.130e^-4	0.688	INTERGENIC
X	14154208	X_14154208_SNP [dm3] X_14260175_SNP [dm6]	C	A	1.134e^-4	0.688	INTERGENIC
2R	3927176	2R_3927176_SNP [dm3] 2R_8039671_SNP [dm6]	C	T	1.134e^-4	0.688	INTRON Optix
2R	9629593	2R_9629593_SNP [dm3] 2R_13742088_SNP [dm6]	C	T	1.139e^-4	0.688	INTRON fas
2L	11111906	2L_11111906_SNP [dm3] 2L_11111906_SNP [dm6]	G	C	1.142e^-4	0.688	NON_SYNONYMOUS_CODING CG6201	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8384828	3R_8384828_SNP [dm3] 3R_12559106_SNP [dm6]	T	C	1.146e^-4	0.688	INTRON Octbeta2R
2R	10817410	2R_10817410_SNP [dm3] 2R_14929905_SNP [dm6]	T	C	1.148e^-4	0.688	UTR_3_PRIME CG10253 DOWNSTREAM CG10253	TF binding site mE1_TFBS_inv
X	10252390	X_10252390_SNP [dm3] X_10358357_SNP [dm6]	C	T	1.154e^-4	0.688	NON_SYNONYMOUS_CODING l_1_G0289
3R	23231713	3R_23231713_SNP [dm3] 3R_27405991_SNP [dm6]	C	T	1.160e^-4	0.688	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13909248	2L_13909248_SNP [dm3] 2L_13909248_SNP [dm6]	G	T	1.161e^-4	0.688	UPSTREAM Ance-2 DOWNSTREAM Ance INTERGENIC
2L	7957240	2L_7957240_SNP [dm3] 2L_7957240_SNP [dm6]	C	A	1.165e^-4	0.688	INTRON Snoo
2L	12763166	2L_12763166_SNP [dm3] 2L_12763166_SNP [dm6]	G	C	1.174e^-4	0.688	INTERGENIC
3L	5462903	3L_5462903_SNP [dm3] 3L_5469803_SNP [dm6]	G	A	1.180e^-4	0.688	INTERGENIC
3L	13467007	3L_13467007_INS [dm3] 3L_13473907_INS [dm6]	A	AA	1.183e^-4	0.688	INTRON CG10089
2R	6674708	2R_6674708_SNP [dm3] 2R_10787203_SNP [dm6]	G	A	1.184e^-4	0.688	UPSTREAM CR44301 INTRON CG33144
2L	12904427	2L_12904427_INS [dm3] 2L_12904427_INS [dm6]	A	AA	1.189e^-4	0.688	INTERGENIC
3L	2821682	3L_2821682_SNP [dm3] 3L_2821682_SNP [dm6]	G	C	1.190e^-4	0.688	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11047426	2L_11047426_SNP [dm3] 2L_11047426_SNP [dm6]	G	A	1.192e^-4	0.688	INTRON Samuel
2L	1194463	2L_1194463_SNP [dm3] 2L_1194463_SNP [dm6]	T	C	1.197e^-4	0.688	INTRON CG5001
2R	17663571	2R_17663571_SNP [dm3] 2R_21776066_SNP [dm6]	C	T	1.198e^-4	0.688	INTERGENIC
3L	10212962	3L_10212962_SNP [dm3] 3L_10219862_SNP [dm6]	C	T	1.199e^-4	0.688	SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
2R	10387541	2R_10387541_SNP [dm3] 2R_14500036_SNP [dm6]	G	A	1.201e^-4	0.688	SYNONYMOUS_CODING Cpsf160	TF binding site mE1_TFBS_sens
3R	21710646	3R_21710646_SNP [dm3] 3R_25884924_SNP [dm6]	T	A	1.204e^-4	0.688	INTRON SppL	TF binding site mE1_TFBS_HSA
2R	16174784	2R_16174784_SNP [dm3] 2R_20287279_SNP [dm6]	T	A	1.206e^-4	0.688	UPSTREAM CG34199 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15491946	2L_15491946_SNP [dm3] 2L_15491946_SNP [dm6]	T	C	1.210e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11514643	2R_11514643_SNP [dm3] 2R_15627138_SNP [dm6]	G	C	1.211e^-4	0.688	INTRON CG42524
3R	18878005	3R_18878005_SNP [dm3] 3R_23052283_SNP [dm6]	C	T	1.213e^-4	0.688	SYNONYMOUS_CODING Gr94a INTRON p53	TF binding site mE1_TFBS_sens
X	16599214	X_16599214_SNP [dm3] X_16705181_SNP [dm6]	A	T	1.214e^-4	0.688	UTR_3_PRIME CG4653 DOWNSTREAM CG9672 INTRON CG4678
3L	6706181	3L_6706181_INS [dm3] 3L_6713081_INS [dm6]	G	GG	1.218e^-4	0.688	DOWNSTREAM ple INTERGENIC
2L	14318719	2L_14318719_SNP [dm3] 2L_14318719_SNP [dm6]	T	G	1.218e^-4	0.688	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9629573	2R_9629573_SNP [dm3] 2R_13742068_SNP [dm6]	T	C	1.221e^-4	0.688	INTRON fas
X	10279691	X_10279691_SNP [dm3] X_10385658_SNP [dm6]	C	T	1.226e^-4	0.688	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18301737	3R_18301737_SNP [dm3] 3R_22476015_SNP [dm6]	T	C	1.231e^-4	0.688	INTRON Nrx-1
3R	4258670	3R_4258670_SNP [dm3] 3R_8432948_SNP [dm6]	G	A	1.243e^-4	0.688	INTRON CG45263
3R	21382285	3R_21382285_SNP [dm3] 3R_25556563_SNP [dm6]	A	C	1.250e^-4	0.688	INTRON msi
2R	18595612	2R_18595612_SNP [dm3] 2R_22708107_SNP [dm6]	A	C	1.252e^-4	0.688	DOWNSTREAM Obp58d INTRON CG30275 EXON CR43735
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	1.255e^-4	0.688	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3R	18301999	3R_18301999_SNP [dm3] 3R_22476277_SNP [dm6]	G	A	1.257e^-4	0.688	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl
2L	18823253	2L_18823253_SNP [dm3] 2L_18823253_SNP [dm6]	A	T	1.263e^-4	0.688	UPSTREAM CG17323 DOWNSTREAM CG17324 INTERGENIC
3R	6458177	3R_6458177_SNP [dm3] 3R_10632455_SNP [dm6]	T	G	1.266e^-4	0.688	INTRON hth	TF binding site mE1_TFBS_cad
2R	10392098	2R_10392098_SNP [dm3] 2R_14504593_SNP [dm6]	C	A	1.269e^-4	0.688	UPSTREAM Asx INTRON Asx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	15563115	3R_15563115_SNP [dm3] 3R_19737393_SNP [dm6]	G	A	1.271e^-4	0.688	INTRON GluClalpha
X	19010604	X_19010604_SNP [dm3] X_19116571_SNP [dm6]	T	C	1.279e^-4	0.688	INTERGENIC
2R	15310574	2R_15310574_SNP [dm3] 2R_19423069_SNP [dm6]	G	T	1.282e^-4	0.688	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	20210009	3R_20210009_SNP [dm3] 3R_24384287_SNP [dm6]	T	A	1.282e^-4	0.688	INTRON CG17780
3R	6801208	3R_6801208_SNP [dm3] 3R_10975486_SNP [dm6]	T	G	1.289e^-4	0.688	INTRON CG34114
2L	20861770	2L_20861770_SNP [dm3] 2L_20861770_SNP [dm6]	A	G	1.297e^-4	0.688	DOWNSTREAM CG9336 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	13399006	X_13399006_SNP [dm3] X_13504973_SNP [dm6]	C	T	1.298e^-4	0.688	INTRON Neto
3L	24508875	3L_24508875_SNP [dm3] 3L_24515775_SNP [dm6]	T	G	1.300e^-4	0.688	INTERGENIC
X	10279586	X_10279586_SNP [dm3] X_10385553_SNP [dm6]	G	C	1.300e^-4	0.688	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	7293389	3R_7293389_SNP [dm3] 3R_11467667_SNP [dm6]	A	T	1.304e^-4	0.688	DOWNSTREAM CG17230 INTERGENIC
X	13163362	X_13163362_SNP [dm3] X_13269329_SNP [dm6]	G	A	1.306e^-4	0.688	INTRON HDAC4
3L	7624737	3L_7624737_SNP [dm3] 3L_7631637_SNP [dm6]	C	A	1.307e^-4	0.688	INTRON CG33275
2R	10214815	2R_10214815_SNP [dm3] 2R_14327310_SNP [dm6]	A	G	1.308e^-4	0.688	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16599610	X_16599610_SNP [dm3] X_16705577_SNP [dm6]	T	A	1.313e^-4	0.688	DOWNSTREAM CG9672 & 1 other INTRON CG4678
3R	9111505	3R_9111505_SNP [dm3] 3R_13285783_SNP [dm6]	A	T	1.314e^-4	0.688	INTRON CG15888
2L	16363245	2L_16363245_SNP [dm3] 2L_16363245_SNP [dm6]	A	G	1.315e^-4	0.688	INTERGENIC
2R	10774254	2R_10774254_SNP [dm3] 2R_14886749_SNP [dm6]	T	G	1.316e^-4	0.688	SYNONYMOUS_CODING Cyp6a21 DOWNSTREAM Cyp6a8
X	19045765	X_19045765_SNP [dm3] X_19151732_SNP [dm6]	T	G	1.323e^-4	0.688	SYNONYMOUS_CODING RhoGAP18B INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
3R	9087822	3R_9087822_SNP [dm3] 3R_13262100_SNP [dm6]	A	G	1.324e^-4	0.688	SYNONYMOUS_CODING CG11686 DOWNSTREAM Ravus
3R	9156105	3R_9156105_SNP [dm3] 3R_13330383_SNP [dm6]	A	G	1.324e^-4	0.688	INTRON PK2-R2
2L	11333414	2L_11333414_SNP [dm3] 2L_11333414_SNP [dm6]	C	A	1.327e^-4	0.688	UPSTREAM CR44584 INTERGENIC
2R	2855654	2R_2855654_SNP [dm3] 2R_6968149_SNP [dm6]	G	C	1.329e^-4	0.688	INTRON mim & 1 other
3R	25631856	3R_25631856_SNP [dm3] 3R_29806134_SNP [dm6]	A	G	1.335e^-4	0.69	NON_SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11087403	3L_11087403_SNP [dm3] 3L_11094303_SNP [dm6]	G	T	1.357e^-4	0.695	NON_SYNONYMOUS_CODING CG6279	TF binding site mE1_TFBS_chinmo
2L	14318895	2L_14318895_SNP [dm3] 2L_14318895_SNP [dm6]	C	T	1.369e^-4	0.695	INTRON wb
3L	13467380	3L_13467380_SNP [dm3] 3L_13474280_SNP [dm6]	A	G	1.375e^-4	0.695	INTRON CG10089
2L	12514880	2L_12514880_SNP [dm3] 2L_12514880_SNP [dm6]	G	A	1.377e^-4	0.695	INTRON bun
X	1666798	X_1666798_SNP [dm3] X_1772765_SNP [dm6]	C	A	1.380e^-4	0.695	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15561940	3R_15561940_SNP [dm3] 3R_19736218_SNP [dm6]	C	G	1.382e^-4	0.695	INTRON GluClalpha
2R	9213467	2R_9213467_SNP [dm3] 2R_13325962_SNP [dm6]	G	T	1.384e^-4	0.695	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9629520	2R_9629520_SNP [dm3] 2R_13742015_SNP [dm6]	T	G	1.387e^-4	0.695	INTRON fas
3R	14203840	3R_14203840_SNP [dm3] 3R_18378118_SNP [dm6]	A	T	1.389e^-4	0.695	DOWNSTREAM CG7675 INTERGENIC	TF binding site mE1_TFBS_cad
3R	3752247	3R_3752247_DEL [dm3] 3R_7926525_DEL [dm6]	GCCAT	G	1.392e^-4	0.695	INTRON dsx
X	19994929	X_19994929_SNP [dm3] X_20100896_SNP [dm6]	C	T	1.396e^-4	0.695	INTERGENIC	transposable element FlyBase
2L	1350919	2L_1350919_SNP [dm3] 2L_1350919_SNP [dm6]	A	G	1.398e^-4	0.695	DOWNSTREAM CG5556 INTERGENIC
3L	5574933	3L_5574933_SNP [dm3] 3L_5581833_SNP [dm6]	C	T	1.403e^-4	0.695	INTERGENIC
X	10256266	X_10256266_SNP [dm3] X_10362233_SNP [dm6]	C	T	1.406e^-4	0.695	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
3L	3639071	3L_3639071_SNP [dm3] 3L_3639071_SNP [dm6]	G	C	1.415e^-4	0.695	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18198049	2R_18198049_SNP [dm3] 2R_22310544_SNP [dm6]	G	A	1.416e^-4	0.695	UPSTREAM wdp INTRON wdp
2R	12568663	2R_12568663_SNP [dm3] 2R_16681158_SNP [dm6]	T	C	1.423e^-4	0.695	SYNONYMOUS_CODING CG30463
2L	10660333	2L_10660333_SNP [dm3] 2L_10660333_SNP [dm6]	T	G	1.423e^-4	0.695	INTERGENIC
3L	11436134	3L_11436134_SNP [dm3] 3L_11443034_SNP [dm6]	A	T	1.424e^-4	0.695	INTERGENIC
2L	12925868	2L_12925868_SNP [dm3] 2L_12925868_SNP [dm6]	T	C	1.438e^-4	0.695	SYNONYMOUS_CODING ACXE DOWNSTREAM ACXA
2L	13043695	2L_13043695_SNP [dm3] 2L_13043695_SNP [dm6]	A	T	1.460e^-4	0.695	INTRON CG9932
2R	16514677	2R_16514677_SNP [dm3] 2R_20627172_SNP [dm6]	A	C	1.462e^-4	0.695	SYNONYMOUS_CODING CG16742
3R	6480166	3R_6480166_SNP [dm3] 3R_10654444_SNP [dm6]	G	A	1.466e^-4	0.695	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10371206	2R_10371206_SNP [dm3] 2R_14483701_SNP [dm6]	T	C	1.466e^-4	0.695	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16599253	X_16599253_SNP [dm3] X_16705220_SNP [dm6]	G	A	1.467e^-4	0.695	UTR_3_PRIME CG4653 DOWNSTREAM CG9672 INTRON CG4678
3L	8537448	3L_8537448_SNP [dm3] 3L_8544348_SNP [dm6]	C	T	1.470e^-4	0.695	UPSTREAM rhea INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	8539495	3L_8539495_SNP [dm3] 3L_8546395_SNP [dm6]	C	A	1.474e^-4	0.695	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13416585	3R_13416585_SNP [dm3] 3R_17590863_SNP [dm6]	T	G	1.474e^-4	0.695	INTERGENIC
3L	15970960	3L_15970960_SNP [dm3] 3L_15977860_SNP [dm6]	C	A	1.478e^-4	0.695	UPSTREAM CG17028 INTRON brm & 1 other
2L	3112492	2L_3112492_SNP [dm3] 2L_3112492_SNP [dm6]	T	A	1.478e^-4	0.695	UPSTREAM toc INTRON toc
X	13259463	X_13259463_SNP [dm3] X_13365430_SNP [dm6]	C	T	1.482e^-4	0.695	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8477112	X_8477112_SNP [dm3] X_8583079_SNP [dm6]	C	A	1.488e^-4	0.695	INTRON CG12065
3R	15902774	3R_15902774_SNP [dm3] 3R_20077052_SNP [dm6]	G	A	1.493e^-4	0.695	INTERGENIC
X	1234218	X_1234218_SNP [dm3] X_1340185_SNP [dm6]	T	A	1.493e^-4	0.695	INTRON CG11409
3R	14028107	3R_14028107_SNP [dm3] 3R_18202385_SNP [dm6]	G	A	1.494e^-4	0.695	INTRON CG7985	insulator Insulator_Class_II.mE01
3L	13494871	3L_13494871_SNP [dm3] 3L_13501771_SNP [dm6]	G	T	1.499e^-4	0.695	NON_SYNONYMOUS_CODING Tgi UPSTREAM Spt20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12254028	2R_12254028_SNP [dm3] 2R_16366523_SNP [dm6]	C	T	1.500e^-4	0.695	UPSTREAM CG15711 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14687645	3L_14687645_SNP [dm3] 3L_14694545_SNP [dm6]	A	G	1.503e^-4	0.695	INTRON ome
2R	10396256	2R_10396256_SNP [dm3] 2R_14508751_SNP [dm6]	G	A	1.505e^-4	0.695	SYNONYMOUS_CODING Asx	TF binding site BDTNP1_TFBS_dl
2R	9247145	2R_9247145_SNP [dm3] 2R_13359640_SNP [dm6]	C	A	1.505e^-4	0.695	INTERGENIC
X	14154213	X_14154213_SNP [dm3] X_14260180_SNP [dm6]	A	T	1.506e^-4	0.695	INTERGENIC
2L	14708898	2L_14708898_SNP [dm3] 2L_14708898_SNP [dm6]	G	T	1.511e^-4	0.695	INTERGENIC
X	19656772	X_19656772_SNP [dm3] X_19762739_SNP [dm6]	A	T	1.516e^-4	0.695	UPSTREAM CG12702 INTRON CG12702	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	1.516e^-4	0.695	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	13705332	3L_13705332_SNP [dm3] 3L_13712232_SNP [dm6]	T	A	1.521e^-4	0.695	INTRON bru-3
2L	7957244	2L_7957244_SNP [dm3] 2L_7957244_SNP [dm6]	C	T	1.523e^-4	0.695	INTRON Snoo
3L	1016119	3L_1016119_SNP [dm3] 3L_1016119_SNP [dm6]	T	C	1.528e^-4	0.695	INTRON trio
2L	3756494	2L_3756494_SNP [dm3] 2L_3756494_SNP [dm6]	G	C	1.539e^-4	0.695	UPSTREAM CG43707 INTERGENIC
2R	9629603	2R_9629603_SNP [dm3] 2R_13742098_SNP [dm6]	T	C	1.540e^-4	0.695	INTRON fas
2L	12925608	2L_12925608_SNP [dm3] 2L_12925608_SNP [dm6]	G	T	1.540e^-4	0.695	UPSTREAM ACXE DOWNSTREAM ACXA INTERGENIC
2L	11376685	2L_11376685_SNP [dm3] 2L_11376685_SNP [dm6]	T	C	1.541e^-4	0.695	INTERGENIC	regulatory region REDfly_CRMs
3R	6801109	3R_6801109_SNP [dm3] 3R_10975387_SNP [dm6]	C	G	1.541e^-4	0.695	INTRON CG34114
3L	16007880	3L_16007880_SNP [dm3] 3L_16014780_SNP [dm6]	C	T	1.546e^-4	0.695	INTERGENIC
X	14483483	X_14483483_SNP [dm3] X_14589450_SNP [dm6]	C	T	1.548e^-4	0.695	INTRON CG9413
3L	12062897	3L_12062897_SNP [dm3] 3L_12069797_SNP [dm6]	C	T	1.549e^-4	0.695	SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14421513	3L_14421513_SNP [dm3] 3L_14428413_SNP [dm6]	C	T	1.555e^-4	0.696	INTRON bbg
2L	16363256	2L_16363256_SNP [dm3] 2L_16363256_SNP [dm6]	T	A	1.559e^-4	0.696	INTERGENIC
2L	3737215	2L_3737215_SNP [dm3] 2L_3737215_SNP [dm6]	T	A	1.576e^-4	0.699	INTRON CG10019
3R	15577741	3R_15577741_SNP [dm3] 3R_19752019_SNP [dm6]	C	T	1.576e^-4	0.699	INTRON GluClalpha
X	20681282	X_20681282_SNP [dm3] X_20810255_SNP [dm6]	T	G	1.576e^-4	0.699	INTRON shakB
3R	20210013	3R_20210013_SNP [dm3] 3R_24384291_SNP [dm6]	A	T	1.582e^-4	0.699	INTRON CG17780
X	13210898	X_13210898_SNP [dm3] X_13316865_SNP [dm6]	G	C	1.584e^-4	0.699	INTRON IP3K2
3L	18038324	3L_18038324_SNP [dm3] 3L_18045224_SNP [dm6]	T	G	1.589e^-4	0.699	INTRON Eip75B
X	19010636	X_19010636_SNP [dm3] X_19116603_SNP [dm6]	G	A	1.600e^-4	0.699	INTERGENIC
2L	5533875	2L_5533875_SNP [dm3] 2L_5533875_SNP [dm6]	A	C	1.600e^-4	0.699	SYNONYMOUS_CODING Cap-D3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20681426	X_20681426_SNP [dm3] X_20810399_SNP [dm6]	T	G	1.602e^-4	0.699	INTRON shakB
2R	20172775	2R_20172775_SNP [dm3] 2R_24285252_SNP [dm6]	G	C	1.604e^-4	0.699	INTRON nvy
3R	20210011	3R_20210011_SNP [dm3] 3R_24384289_SNP [dm6]	T	A	1.613e^-4	0.699	INTRON CG17780
3R	14778468	3R_14778468_SNP [dm3] 3R_18952746_SNP [dm6]	T	A	1.615e^-4	0.699	INTRON CG42613 & 1 other
X	13399101	X_13399101_SNP [dm3] X_13505068_SNP [dm6]	T	G	1.617e^-4	0.699	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11384453	2R_11384453_SNP [dm3] 2R_15496948_SNP [dm6]	C	A	1.618e^-4	0.699	INTRON CG12964	TF binding site mE1_TFBS_Trl
2R	8872704	2R_8872704_SNP [dm3] 2R_12985199_SNP [dm6]	T	G	1.620e^-4	0.699	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	13178709	3L_13178709_SNP [dm3] 3L_13185609_SNP [dm6]	T	G	1.631e^-4	0.702	INTERGENIC
2R	10216085	2R_10216085_SNP [dm3] 2R_14328580_SNP [dm6]	A	G	1.641e^-4	0.704	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
X	10279788	X_10279788_SNP [dm3] X_10385755_SNP [dm6]	A	T	1.653e^-4	0.704	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	9290345	3R_9290345_SNP [dm3] 3R_13464623_SNP [dm6]	T	A	1.654e^-4	0.704	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
3L	8537248	3L_8537248_DEL [dm3] 3L_8544148_DEL [dm6]	AA	C	1.655e^-4	0.704	UPSTREAM rhea INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10889019	2L_10889019_SNP [dm3] 2L_10889019_SNP [dm6]	G	A	1.666e^-4	0.704	UPSTREAM CG14071 INTERGENIC
2R	11737700	2R_11737700_SNP [dm3] 2R_15850195_SNP [dm6]	C	T	1.668e^-4	0.704	INTRON tun
2R	10217953	2R_10217953_SNP [dm3] 2R_14330448_SNP [dm6]	A	T	1.672e^-4	0.704	INTRON Shroom
2L	8714450	2L_8714450_SNP [dm3] 2L_8714450_SNP [dm6]	G	A	1.676e^-4	0.704	UTR_5_PRIME raw INTRON raw
2L	10154659	2L_10154659_SNP [dm3] 2L_10154659_SNP [dm6]	T	C	1.680e^-4	0.704	INTRON CG44153 & 1 other
2L	16876121	2L_16876121_SNP [dm3] 2L_16876121_SNP [dm6]	G	C	1.683e^-4	0.704	INTRON CR31781
3L	10302178	3L_10302178_SNP [dm3] 3L_10309078_SNP [dm6]	T	C	1.688e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10013046	3L_10013046_INS [dm3] 3L_10019946_INS [dm6]	G	GCAAG	1.691e^-4	0.704	INTRON dpr6
3L	7989598	3L_7989598_SNP [dm3] 3L_7996498_SNP [dm6]	C	G	1.698e^-4	0.704	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	7440194	2R_7440194_SNP [dm3] 2R_11552689_SNP [dm6]	A	C	1.704e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16533655	3L_16533655_SNP [dm3] 3L_16540555_SNP [dm6]	C	T	1.704e^-4	0.704	INTRON CG43373
X	15454107	X_15454107_SNP [dm3] X_15560074_SNP [dm6]	G	A	1.704e^-4	0.704	INTERGENIC
2R	6735376	2R_6735376_SNP [dm3] 2R_10847871_SNP [dm6]	A	G	1.706e^-4	0.704	INTRON CG30015
3L	18810814	3L_18810814_SNP [dm3] 3L_18817714_SNP [dm6]	T	C	1.707e^-4	0.704	INTRON CG14073
3L	14603877	3L_14603877_SNP [dm3] 3L_14610777_SNP [dm6]	T	C	1.707e^-4	0.704	INTERGENIC
2L	7960732	2L_7960732_INS [dm3] 2L_7960732_INS [dm6]	C	CA	1.715e^-4	0.705	INTRON Snoo
3L	1875598	3L_1875598_SNP [dm3] 3L_1875598_SNP [dm6]	C	G	1.726e^-4	0.706	DOWNSTREAM CG13937 INTRON dre4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10132971	2L_10132971_SNP [dm3] 2L_10132971_SNP [dm6]	T	G	1.727e^-4	0.706	INTRON CG44153
2L	15758686	2L_15758686_SNP [dm3] 2L_15758686_SNP [dm6]	A	T	1.730e^-4	0.706	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9092062	3R_9092062_SNP [dm3] 3R_13266340_SNP [dm6]	A	C	1.735e^-4	0.706	INTRON Su_var_3-7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14318768	2L_14318768_SNP [dm3] 2L_14318768_SNP [dm6]	A	C	1.755e^-4	0.706	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	19104243	3L_19104243_SNP [dm3] 3L_19111143_SNP [dm6]	T	C	1.757e^-4	0.706	INTRON CG14082
2L	15103900	2L_15103900_SNP [dm3] 2L_15103900_SNP [dm6]	T	C	1.758e^-4	0.706	INTERGENIC
2L	12240099	2L_12240099_SNP [dm3] 2L_12240099_SNP [dm6]	A	G	1.767e^-4	0.706	INTRON aret
2L	1352568	2L_1352568_SNP [dm3] 2L_1352568_SNP [dm6]	G	A	1.769e^-4	0.706	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
3L	7363578	3L_7363578_SNP [dm3] 3L_7370478_SNP [dm6]	A	T	1.772e^-4	0.706	UTR_5_PRIME akirin UPSTREAM akirin INTRON akirin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	3278015	2L_3278015_SNP [dm3] 2L_3278015_SNP [dm6]	A	T	1.772e^-4	0.706	INTRON CG3332
2L	14318772	2L_14318772_SNP [dm3] 2L_14318772_SNP [dm6]	C	A	1.773e^-4	0.706	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9204415	2R_9204415_SNP [dm3] 2R_13316910_SNP [dm6]	A	T	1.774e^-4	0.706	INTERGENIC
X	1998974	X_1998974_SNP [dm3] X_2104941_SNP [dm6]	T	A	1.782e^-4	0.706	INTRON csw
3L	9582866	3L_9582866_SNP [dm3] 3L_9589766_SNP [dm6]	G	T	1.784e^-4	0.706	INTRON CG42673
2R	9653951	2R_9653951_SNP [dm3] 2R_13766446_SNP [dm6]	T	A	1.784e^-4	0.706	INTERGENIC
3R	10349795	3R_10349795_SNP [dm3] 3R_14524073_SNP [dm6]	C	T	1.787e^-4	0.706	INTRON Pde6
2R	16178648	2R_16178648_SNP [dm3] 2R_20291143_SNP [dm6]	A	G	1.792e^-4	0.706	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3R	13412748	3R_13412748_SNP [dm3] 3R_17587026_SNP [dm6]	A	C	1.801e^-4	0.706	INTERGENIC
3L	14631826	3L_14631826_SNP [dm3] 3L_14638726_SNP [dm6]	G	A	1.813e^-4	0.706	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	14631833	3L_14631833_SNP [dm3] 3L_14638733_SNP [dm6]	A	G	1.813e^-4	0.706	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	6462776	3R_6462776_SNP [dm3] 3R_10637054_SNP [dm6]	C	T	1.816e^-4	0.706	INTRON hth
3L	6548710	3L_6548710_SNP [dm3] 3L_6555610_SNP [dm6]	C	T	1.817e^-4	0.706	INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	47438	2R_47438_SNP [dm3] 2R_4159933_SNP [dm6]	C	T	1.818e^-4	0.706	INTERGENIC
3L	15733717	3L_15733717_SNP [dm3] 3L_15740617_SNP [dm6]	A	T	1.821e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	14203834	3R_14203834_SNP [dm3] 3R_18378112_SNP [dm6]	C	T	1.822e^-4	0.706	DOWNSTREAM CG7675 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5509886	2L_5509886_SNP [dm3] 2L_5509886_SNP [dm6]	T	C	1.824e^-4	0.706	INTERGENIC
3L	901640	3L_901640_SNP [dm3] 3L_901640_SNP [dm6]	C	T	1.825e^-4	0.706	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	10348157	2R_10348157_SNP [dm3] 2R_14460652_SNP [dm6]	C	T	1.830e^-4	0.706	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	10198669	2R_10198669_SNP [dm3] 2R_14311164_SNP [dm6]	T	A	1.838e^-4	0.706	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	9653945	2R_9653945_SNP [dm3] 2R_13766440_SNP [dm6]	G	A	1.848e^-4	0.706	INTERGENIC
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	1.851e^-4	0.706	INTRON Con
3L	3637952	3L_3637952_SNP [dm3] 3L_3637952_SNP [dm6]	T	A	1.853e^-4	0.706	INTRON dar1	TF binding site BDTNP1_TFBS_da
2R	7438866	2R_7438866_SNP [dm3] 2R_11551361_SNP [dm6]	C	T	1.862e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15112975	X_15112975_MNP [dm3] X_15218942_MNP [dm6]	GCA	ATG	1.867e^-4	0.706	INTERGENIC
3L	1875578	3L_1875578_SNP [dm3] 3L_1875578_SNP [dm6]	C	T	1.867e^-4	0.706	SYNONYMOUS_CODING dre4 DOWNSTREAM CG13937	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19447468	3L_19447468_SNP [dm3] 3L_19454368_SNP [dm6]	A	G	1.869e^-4	0.706	UPSTREAM CR45434 INTERGENIC
3R	24357064	3R_24357064_SNP [dm3] 3R_28531342_SNP [dm6]	C	A	1.869e^-4	0.706	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13038897	3L_13038897_DEL [dm3] 3L_13045797_DEL [dm6]	TGATAAGT	T	1.883e^-4	0.706	INTRON Syx13	TF binding site mE1_TFBS_HSA
X	1925536	X_1925536_SNP [dm3] X_2031503_SNP [dm6]	G	C	1.885e^-4	0.706	INTRON Actn	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2R	14450712	2R_14450712_SNP [dm3] 2R_18563207_SNP [dm6]	A	C	1.890e^-4	0.706	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4896296	X_4896296_SNP [dm3] X_5002263_SNP [dm6]	T	C	1.891e^-4	0.706	INTRON CR44833	regulatory region REDfly_CRMs
2L	6141012	2L_6141012_SNP [dm3] 2L_6141012_SNP [dm6]	A	G	1.892e^-4	0.706	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13529389	2L_13529389_SNP [dm3] 2L_13529389_SNP [dm6]	T	C	1.893e^-4	0.706	SYNONYMOUS_CODING CG33641 UPSTREAM CG33642 DOWNSTREAM CG33640 INTRON B4
X	14483474	X_14483474_SNP [dm3] X_14589441_SNP [dm6]	T	C	1.902e^-4	0.706	INTRON CG9413
2L	6005644	2L_6005644_SNP [dm3] 2L_6005644_SNP [dm6]	A	C	1.914e^-4	0.706	INTRON Gal EXON CR43866	TF binding site mE1_TFBS_cad
2L	1377281	2L_1377281_SNP [dm3] 2L_1377281_SNP [dm6]	G	C	1.916e^-4	0.706	INTERGENIC
3R	18877729	3R_18877729_SNP [dm3] 3R_23052007_SNP [dm6]	G	A	1.918e^-4	0.706	NON_SYNONYMOUS_CODING Gr94a UPSTREAM p53 INTRON p53	TF binding site mE1_TFBS_sens
2L	3756493	2L_3756493_SNP [dm3] 2L_3756493_SNP [dm6]	C	A	1.921e^-4	0.706	UPSTREAM CG43707 INTERGENIC
3L	11394076	3L_11394076_SNP [dm3] 3L_11400976_SNP [dm6]	A	T	1.923e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16552789	3R_16552789_SNP [dm3] 3R_20727067_SNP [dm6]	A	T	1.928e^-4	0.706	INTERGENIC
3R	14041122	3R_14041122_SNP [dm3] 3R_18215400_SNP [dm6]	A	T	1.932e^-4	0.706	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
2R	10817408	2R_10817408_SNP [dm3] 2R_14929903_SNP [dm6]	T	C	1.935e^-4	0.706	UTR_3_PRIME CG10253 DOWNSTREAM CG10253	TF binding site mE1_TFBS_inv
2L	14318782	2L_14318782_SNP [dm3] 2L_14318782_SNP [dm6]	T	G	1.936e^-4	0.706	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10352413	3R_10352413_SNP [dm3] 3R_14526691_SNP [dm6]	T	C	1.936e^-4	0.706	INTRON Pde6
2L	8307076	2L_8307076_SNP [dm3] 2L_8307076_SNP [dm6]	C	T	1.942e^-4	0.706	SPLICE_SITE_REGION Ostgamma DOWNSTREAM CG7840 INTRON Ostgamma	TF binding site mE1_TFBS_sens
3L	3943678	3L_3943678_SNP [dm3] 3L_3943678_SNP [dm6]	T	C	1.943e^-4	0.706	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	11934021	2L_11934021_SNP [dm3] 2L_11934021_SNP [dm6]	T	A	1.947e^-4	0.706	UPSTREAM Or33a INTERGENIC
3L	2000080	3L_2000080_SNP [dm3] 3L_2000080_SNP [dm6]	C	G	1.955e^-4	0.706	INTERGENIC
3L	6789660	3L_6789660_SNP [dm3] 3L_6796560_SNP [dm6]	G	A	1.958e^-4	0.706	INTERGENIC
3R	13412738	3R_13412738_SNP [dm3] 3R_17587016_SNP [dm6]	G	A	1.963e^-4	0.706	INTERGENIC
2L	10215938	2L_10215938_SNP [dm3] 2L_10215938_SNP [dm6]	A	G	1.974e^-4	0.706	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1098245	3L_1098245_SNP [dm3] 3L_1098245_SNP [dm6]	G	A	1.977e^-4	0.706	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1002834	3L_1002834_SNP [dm3] 3L_1002834_SNP [dm6]	C	T	1.984e^-4	0.706	INTRON trio
3R	13972477	3R_13972477_SNP [dm3] 3R_18146755_SNP [dm6]	A	G	1.987e^-4	0.706	INTERGENIC
2R	6109280	2R_6109280_SNP [dm3] 2R_10221775_SNP [dm6]	G	A	1.991e^-4	0.706	INTRON Hr46 & 1 other
2L	12768125	2L_12768125_SNP [dm3] 2L_12768125_SNP [dm6]	A	G	1.992e^-4	0.706	INTERGENIC
2L	10683410	2L_10683410_SNP [dm3] 2L_10683410_SNP [dm6]	G	C	1.992e^-4	0.706	DOWNSTREAM CG7299 & 1 other INTERGENIC
3R	14028108	3R_14028108_SNP [dm3] 3R_18202386_SNP [dm6]	C	T	1.992e^-4	0.706	INTRON CG7985	insulator Insulator_Class_II.mE01
3R	3379335	3R_3379335_SNP [dm3] 3R_7553613_SNP [dm6]	C	T	1.999e^-4	0.706	INTERGENIC
2L	10154649	2L_10154649_SNP [dm3] 2L_10154649_SNP [dm6]	C	T	2.001e^-4	0.706	INTRON CG44153 & 1 other
2L	14710075	2L_14710075_SNP [dm3] 2L_14710075_SNP [dm6]	C	T	2.011e^-4	0.706	INTERGENIC
2L	12762833	2L_12762833_SNP [dm3] 2L_12762833_SNP [dm6]	C	T	2.015e^-4	0.706	UPSTREAM CG15483 INTERGENIC
2R	19975263	2R_19975263_SNP [dm3] 2R_24087740_SNP [dm6]	T	A	2.031e^-4	0.706	INTRON snama
2R	19975264	2R_19975264_SNP [dm3] 2R_24087741_SNP [dm6]	T	G	2.031e^-4	0.706	INTRON snama
X	10280178	X_10280178_SNP [dm3] X_10386145_SNP [dm6]	A	G	2.031e^-4	0.706	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1914517	X_1914517_SNP [dm3] X_2020484_SNP [dm6]	T	C	2.032e^-4	0.706	SYNONYMOUS_CODING east	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25630964	3R_25630964_SNP [dm3] 3R_29805242_SNP [dm6]	G	A	2.033e^-4	0.706	SYNONYMOUS_CODING ncd DOWNSTREAM CG7789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21710620	3R_21710620_SNP [dm3] 3R_25884898_SNP [dm6]	T	A	2.034e^-4	0.706	INTRON SppL	TF binding site mE1_TFBS_HSA
3L	6508588	3L_6508588_SNP [dm3] 3L_6515488_SNP [dm6]	G	A	2.041e^-4	0.706	INTRON sfl
3L	6508595	3L_6508595_SNP [dm3] 3L_6515495_SNP [dm6]	T	A	2.041e^-4	0.706	INTRON sfl
2R	7634349	2R_7634349_SNP [dm3] 2R_11746844_SNP [dm6]	C	T	2.042e^-4	0.706	INTERGENIC
3R	10351390	3R_10351390_SNP [dm3] 3R_14525668_SNP [dm6]	C	A	2.043e^-4	0.706	INTRON Pde6
3R	8555156	3R_8555156_SNP [dm3] 3R_12729434_SNP [dm6]	C	A	2.050e^-4	0.706	DOWNSTREAM CR44231 INTERGENIC
X	5451098	X_5451098_SNP [dm3] X_5557065_SNP [dm6]	G	A	2.051e^-4	0.706	INTRON Vsx2
X	953524	X_953524_SNP [dm3] X_1059491_SNP [dm6]	G	C	2.057e^-4	0.706	INTRON CR44779
2L	5992680	2L_5992680_SNP [dm3] 2L_5992680_SNP [dm6]	T	A	2.057e^-4	0.706	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14710070	2L_14710070_SNP [dm3] 2L_14710070_SNP [dm6]	T	A	2.066e^-4	0.706	INTERGENIC
2L	3737240	2L_3737240_SNP [dm3] 2L_3737240_SNP [dm6]	A	G	2.068e^-4	0.706	INTRON CG10019
2L	2304500	2L_2304500_SNP [dm3] 2L_2304500_SNP [dm6]	T	C	2.071e^-4	0.706	INTERGENIC
3L	14596963	3L_14596963_SNP [dm3] 3L_14603863_SNP [dm6]	G	T	2.072e^-4	0.706	INTERGENIC
2L	7506757	2L_7506757_SNP [dm3] 2L_7506757_SNP [dm6]	A	G	2.072e^-4	0.706	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	4150029	2L_4150029_SNP [dm3] 2L_4150029_SNP [dm6]	T	A	2.078e^-4	0.706	SYNONYMOUS_CODING CG2955
3R	8381714	3R_8381714_SNP [dm3] 3R_12555992_SNP [dm6]	C	T	2.079e^-4	0.706	INTRON Octbeta2R
2L	18909085	2L_18909085_SNP [dm3] 2L_18909085_SNP [dm6]	T	C	2.081e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	12936008	X_12936008_SNP [dm3] X_13041975_SNP [dm6]	G	T	2.083e^-4	0.706	INTRON rad
3R	8555192	3R_8555192_DEL [dm3] 3R_12729470_DEL [dm6]	TTAC	T	2.086e^-4	0.706	INTERGENIC
2L	8260812	2L_8260812_SNP [dm3] 2L_8260812_SNP [dm6]	G	T	2.088e^-4	0.706	SYNONYMOUS_CODING Btk29A
2L	3755869	2L_3755869_SNP [dm3] 2L_3755869_SNP [dm6]	A	T	2.091e^-4	0.706	INTERGENIC
2L	12925364	2L_12925364_SNP [dm3] 2L_12925364_SNP [dm6]	T	A	2.098e^-4	0.706	UTR_3_PRIME ACXA UPSTREAM ACXE
X	2182679	X_2182679_SNP [dm3] X_2288646_SNP [dm6]	T	A	2.098e^-4	0.706	INTRON CG2865	TF binding site BDTNP1_TFBS_dl
3L	2396333	3L_2396333_SNP [dm3] 3L_2396333_SNP [dm6]	C	T	2.108e^-4	0.707	INTRON CG45186
3L	2663293	3L_2663293_SNP [dm3] 3L_2663293_SNP [dm6]	A	T	2.110e^-4	0.707	INTRON Fife & 1 other
3R	22574672	3R_22574672_SNP [dm3] 3R_26748950_SNP [dm6]	G	A	2.115e^-4	0.707	INTERGENIC
2R	17663567	2R_17663567_SNP [dm3] 2R_21776062_SNP [dm6]	A	G	2.123e^-4	0.707	INTERGENIC
X	14519573	X_14519573_SNP [dm3] X_14625540_SNP [dm6]	T	A	2.124e^-4	0.707	INTRON NetA
X	19082383	X_19082383_SNP [dm3] X_19188350_SNP [dm6]	G	C	2.125e^-4	0.707	INTRON Mec2	TF binding site mE1_TFBS_cad
3L	15838649	3L_15838649_SNP [dm3] 3L_15845549_SNP [dm6]	G	A	2.144e^-4	0.707	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6548912	3L_6548912_DEL [dm3] 3L_6555812_DEL [dm6]	ACTTACTATACCCTTACATA...	A	2.152e^-4	0.707	INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4877938	X_4877938_SNP [dm3] X_4983905_SNP [dm6]	C	A	2.163e^-4	0.707	INTRON CR44833	regulatory region REDfly_CRMs
X	13333077	X_13333077_SNP [dm3] X_13439044_SNP [dm6]	A	G	2.163e^-4	0.707	INTERGENIC
2L	9553770	2L_9553770_SNP [dm3] 2L_9553770_SNP [dm6]	T	C	2.168e^-4	0.707	INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12547479	2R_12547479_SNP [dm3] 2R_16659974_SNP [dm6]	T	G	2.174e^-4	0.707	UPSTREAM Picot INTRON Picot
3L	18826382	3L_18826382_SNP [dm3] 3L_18833282_SNP [dm6]	T	A	2.174e^-4	0.707	INTRON Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4878193	X_4878193_SNP [dm3] X_4984160_SNP [dm6]	T	C	2.174e^-4	0.707	INTRON CR44833	regulatory region REDfly_CRMs
3R	5048719	3R_5048719_DEL [dm3] 3R_9222997_DEL [dm6]	TTAGCT	A	2.187e^-4	0.707	INTRON pum
2R	12387429	2R_12387429_SNP [dm3] 2R_16499924_SNP [dm6]	C	T	2.193e^-4	0.707	UPSTREAM Sema-2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14068830	3L_14068830_SNP [dm3] 3L_14075730_SNP [dm6]	C	G	2.193e^-4	0.707	SYNONYMOUS_CODING Pex1 UPSTREAM btl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10577113	2R_10577113_SNP [dm3] 2R_14689608_SNP [dm6]	A	G	2.195e^-4	0.707	INTRON mspo
3R	8555158	3R_8555158_SNP [dm3] 3R_12729436_SNP [dm6]	C	G	2.196e^-4	0.707	DOWNSTREAM CR44231 INTERGENIC
3R	8246176	3R_8246176_SNP [dm3] 3R_12420454_SNP [dm6]	A	T	2.197e^-4	0.707	DOWNSTREAM Scgbeta INTRON pps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	10683444	2L_10683444_DEL [dm3] 2L_10683444_DEL [dm6]	TACAA	T	2.199e^-4	0.707	UTR_3_PRIME CG7299 DOWNSTREAM CG17107 & 1 other
3L	14068610	3L_14068610_SNP [dm3] 3L_14075510_SNP [dm6]	A	C	2.201e^-4	0.707	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
X	16903728	X_16903728_DEL [dm3] X_17009695_DEL [dm6]	AA	A	2.208e^-4	0.707	INTRON CG45002
X	19952437	X_19952437_SNP [dm3] X_20058404_SNP [dm6]	C	T	2.211e^-4	0.707	INTRON Dop2R
3R	8975342	3R_8975342_SNP [dm3] 3R_13149620_SNP [dm6]	G	A	2.215e^-4	0.707	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	10218385	3L_10218385_SNP [dm3] 3L_10225285_SNP [dm6]	A	G	2.215e^-4	0.707	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10354200	3R_10354200_DEL [dm3] 3R_14528478_DEL [dm6]	CGC	C	2.216e^-4	0.707	INTRON Pde6
3R	9092072	3R_9092072_SNP [dm3] 3R_13266350_SNP [dm6]	G	A	2.218e^-4	0.707	INTRON Su_var_3-7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6548907	3L_6548907_SNP [dm3] 3L_6555807_SNP [dm6]	A	C	2.220e^-4	0.707	INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5574917	3L_5574917_INS [dm3] 3L_5581817_INS [dm6]	C	CA	2.222e^-4	0.707	INTERGENIC
2L	737517	2L_737517_SNP [dm3] 2L_737517_SNP [dm6]	G	A	2.224e^-4	0.707	UTR_3_PRIME Eaat2
3R	23320246	3R_23320246_SNP [dm3] 3R_27494524_SNP [dm6]	G	A	2.225e^-4	0.707	INTERGENIC
2L	12926521	2L_12926521_SNP [dm3] 2L_12926521_SNP [dm6]	A	G	2.230e^-4	0.707	SYNONYMOUS_CODING ACXE
2R	11755629	2R_11755629_SNP [dm3] 2R_15868124_SNP [dm6]	A	C	2.235e^-4	0.707	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
X	10018274	X_10018274_SNP [dm3] X_10124241_SNP [dm6]	G	T	2.236e^-4	0.707	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2L	14318766	2L_14318766_SNP [dm3] 2L_14318766_SNP [dm6]	G	A	2.237e^-4	0.707	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8875364	2R_8875364_INS [dm3] 2R_12987859_INS [dm6]	T	AAGTTTACAGA...	2.239e^-4	0.707	INTERGENIC
3L	6548900	3L_6548900_SNP [dm3] 3L_6555800_SNP [dm6]	T	C	2.244e^-4	0.707	INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16040598	3L_16040598_INS [dm3] 3L_16047498_INS [dm6]	A	AA	2.254e^-4	0.708	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	3927177	2R_3927177_SNP [dm3] 2R_8039672_SNP [dm6]	T	C	2.256e^-4	0.708	INTRON Optix
2L	6048155	2L_6048155_SNP [dm3] 2L_6048155_SNP [dm6]	A	G	2.258e^-4	0.708	SYNONYMOUS_CODING CG34179 START_GAINED CG12393 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14709860	2L_14709860_SNP [dm3] 2L_14709860_SNP [dm6]	T	G	2.271e^-4	0.711	INTERGENIC
2L	4707364	2L_4707364_SNP [dm3] 2L_4707364_SNP [dm6]	G	C	2.280e^-4	0.711	INTRON CG34351
3L	9803160	3L_9803160_SNP [dm3] 3L_9810060_SNP [dm6]	C	A	2.281e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2000949	3L_2000949_SNP [dm3] 3L_2000949_SNP [dm6]	C	T	2.283e^-4	0.711	INTERGENIC
X	9778236	X_9778236_SNP [dm3] X_9884203_SNP [dm6]	G	A	2.289e^-4	0.712	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
X	9957329	X_9957329_SNP [dm3] X_10063296_SNP [dm6]	T	C	2.310e^-4	0.717	DOWNSTREAM Gr9a INTRON CG15312
2L	15103914	2L_15103914_SNP [dm3] 2L_15103914_SNP [dm6]	C	A	2.316e^-4	0.717	INTERGENIC
X	20860137	X_20860137_SNP [dm3] X_20989110_SNP [dm6]	G	C	2.320e^-4	0.717	INTERGENIC
3L	12522327	3L_12522327_SNP [dm3] 3L_12529227_SNP [dm6]	C	T	2.323e^-4	0.717	SYNONYMOUS_CODING nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9156099	3R_9156099_SNP [dm3] 3R_13330377_SNP [dm6]	C	T	2.324e^-4	0.717	INTRON PK2-R2
2L	4109539	2L_4109539_SNP [dm3] 2L_4109539_SNP [dm6]	G	A	2.329e^-4	0.717	INTRON ed
3L	14687303	3L_14687303_DEL [dm3] 3L_14694203_DEL [dm6]	GG	G	2.335e^-4	0.718	INTRON ome
2R	10364371	2R_10364371_SNP [dm3] 2R_14476866_SNP [dm6]	C	T	2.355e^-4	0.723	INTRON CR44462	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20950512	X_20950512_SNP [dm3] X_21079485_SNP [dm6]	A	C	2.379e^-4	0.724	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26449797	3R_26449797_SNP [dm3] 3R_30624075_SNP [dm6]	T	A	2.382e^-4	0.724	DOWNSTREAM CR44136 INTERGENIC
3L	11087401	3L_11087401_SNP [dm3] 3L_11094301_SNP [dm6]	T	C	2.383e^-4	0.724	SYNONYMOUS_CODING CG6279	TF binding site mE1_TFBS_chinmo
3R	14778509	3R_14778509_SNP [dm3] 3R_18952787_SNP [dm6]	C	A	2.386e^-4	0.724	INTRON CG42613 & 1 other
2L	8540030	2L_8540030_SNP [dm3] 2L_8540030_SNP [dm6]	G	C	2.386e^-4	0.724	INTRON CG17834
3R	4353734	3R_4353734_SNP [dm3] 3R_8528012_SNP [dm6]	A	G	2.387e^-4	0.724	DOWNSTREAM CG11741 INTERGENIC
X	16947214	X_16947214_SNP [dm3] X_17053181_SNP [dm6]	G	A	2.388e^-4	0.724	INTRON CG45002
X	15113017	X_15113017_DEL [dm3] X_15218984_DEL [dm6]	ACATAACATATTTTAAGCA...	A	2.388e^-4	0.724	INTERGENIC
3R	19428144	3R_19428144_SNP [dm3] 3R_23602422_SNP [dm6]	C	A	2.394e^-4	0.724	UPSTREAM tRNA:CR31143 DOWNSTREAM CG10184 INTERGENIC
3L	16040628	3L_16040628_INS [dm3] 3L_16047528_INS [dm6]	A	ACGTGTTTTTATCGGTCGA...	2.404e^-4	0.726	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	19295704	3L_19295704_SNP [dm3] 3L_19302604_SNP [dm6]	A	G	2.413e^-4	0.727	UTR_3_PRIME pip INTRON pip	TF binding site mE1_TFBS_sens
2L	1350677	2L_1350677_SNP [dm3] 2L_1350677_SNP [dm6]	A	T	2.414e^-4	0.727	INTERGENIC
3R	3549247	3R_3549247_SNP [dm3] 3R_7723525_SNP [dm6]	A	G	2.420e^-4	0.727	INTRON CG2616
3R	9092049	3R_9092049_SNP [dm3] 3R_13266327_SNP [dm6]	G	A	2.431e^-4	0.728	SPLICE_SITE_REGION Su_var_3-7 INTRON Su_var_3-7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7904174	3L_7904174_SNP [dm3] 3L_7911074_SNP [dm6]	C	G	2.432e^-4	0.728	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9432235	2R_9432235_SNP [dm3] 2R_13544730_SNP [dm6]	C	G	2.433e^-4	0.728	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	19975285	2R_19975285_SNP [dm3] 2R_24087762_SNP [dm6]	C	T	2.448e^-4	0.73	INTRON snama
3L	15476592	3L_15476592_DEL [dm3] 3L_15483492_DEL [dm6]	AA	A	2.455e^-4	0.73	DOWNSTREAM Ran-like INTERGENIC
2R	13928134	2R_13928134_DEL [dm3] 2R_18040629_DEL [dm6]	GA	G	2.463e^-4	0.73	INTERGENIC
3L	18838609	3L_18838609_SNP [dm3] 3L_18845509_SNP [dm6]	C	T	2.464e^-4	0.73	INTRON Indy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8555197	3R_8555197_SNP [dm3] 3R_12729475_SNP [dm6]	T	C	2.466e^-4	0.73	INTERGENIC
2L	15758677	2L_15758677_SNP [dm3] 2L_15758677_SNP [dm6]	G	A	2.467e^-4	0.73	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10122693	X_10122693_SNP [dm3] X_10228660_SNP [dm6]	C	T	2.469e^-4	0.73	INTRON CG34408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	6537548	3L_6537548_SNP [dm3] 3L_6544448_SNP [dm6]	C	T	2.479e^-4	0.732	INTRON sfl
3L	6312989	3L_6312989_SNP [dm3] 3L_6319889_SNP [dm6]	T	C	2.495e^-4	0.736	UPSTREAM Or65a INTERGENIC	regulatory region REDfly_CRMs
2L	1365944	2L_1365944_SNP [dm3] 2L_1365944_SNP [dm6]	G	A	2.510e^-4	0.738	INTERGENIC
3R	26479869	3R_26479869_SNP [dm3] 3R_30654147_SNP [dm6]	G	A	2.510e^-4	0.738	INTERGENIC
X	15437184	X_15437184_SNP [dm3] X_15543151_SNP [dm6]	G	A	2.522e^-4	0.74	INTRON Ac13E
3R	24627818	3R_24627818_DEL [dm3] 3R_28802096_DEL [dm6]	AGGATATTTGAAAAGGATAC...	A	2.526e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23315508	3R_23315508_SNP [dm3] 3R_27489786_SNP [dm6]	A	G	2.530e^-4	0.74	UTR_3_PRIME Gr98a
3R	10349734	3R_10349734_SNP [dm3] 3R_14524012_SNP [dm6]	C	T	2.539e^-4	0.741	DOWNSTREAM Cyp313a1 INTRON Pde6
2L	8719224	2L_8719224_SNP [dm3] 2L_8719224_SNP [dm6]	G	A	2.549e^-4	0.741	INTRON raw
X	10256271	X_10256271_SNP [dm3] X_10362238_SNP [dm6]	T	G	2.554e^-4	0.741	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
3L	16052656	3L_16052656_SNP [dm3] 3L_16059556_SNP [dm6]	A	G	2.561e^-4	0.741	INTRON Mbs
2L	10154660	2L_10154660_SNP [dm3] 2L_10154660_SNP [dm6]	G	T	2.562e^-4	0.741	INTRON CG44153 & 1 other
2R	16175651	2R_16175651_DEL [dm3] 2R_20288146_DEL [dm6]	GC	G	2.566e^-4	0.741	FRAME_SHIFT CG34199 DOWNSTREAM Cpr56F
2R	12642481	2R_12642481_SNP [dm3] 2R_16754976_SNP [dm6]	C	T	2.572e^-4	0.741	UPSTREAM CG5267 DOWNSTREAM CG34189 INTRON unc-104
3R	20210035	3R_20210035_SNP [dm3] 3R_24384313_SNP [dm6]	G	T	2.573e^-4	0.741	INTRON CG17780
3L	16772675	3L_16772675_SNP [dm3] 3L_16779575_SNP [dm6]	G	C	2.580e^-4	0.741	UTR_5_PRIME CG13025 UPSTREAM CG9705	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	16313373	3L_16313373_SNP [dm3] 3L_16320273_SNP [dm6]	C	G	2.599e^-4	0.741	SYNONYMOUS_CODING CG13060 UPSTREAM CG13041 & 1 other DOWNSTREAM CG42718
2R	10214942	2R_10214942_SNP [dm3] 2R_14327437_SNP [dm6]	A	C	2.599e^-4	0.741	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8610550	2R_8610550_SNP [dm3] 2R_12723045_SNP [dm6]	T	A	2.604e^-4	0.741	INTRON CG42663
2L	12925932	2L_12925932_SNP [dm3] 2L_12925932_SNP [dm6]	G	A	2.610e^-4	0.741	DOWNSTREAM ACXA INTRON ACXE
2L	18376322	2L_18376322_SNP [dm3] 2L_18376322_SNP [dm6]	T	C	2.612e^-4	0.741	INTRON Fas3
3L	6549108	3L_6549108_SNP [dm3] 3L_6556008_SNP [dm6]	G	A	2.619e^-4	0.741	INTRON CG18769	TF binding site mE1_TFBS_inv
3L	6549113	3L_6549113_SNP [dm3] 3L_6556013_SNP [dm6]	G	C	2.619e^-4	0.741	INTRON CG18769	TF binding site mE1_TFBS_inv
3R	9094726	3R_9094726_SNP [dm3] 3R_13269004_SNP [dm6]	G	A	2.631e^-4	0.741	UTR_3_PRIME Su_var_3-7 DOWNSTREAM CG8449	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14307882	2L_14307882_SNP [dm3] 2L_14307882_SNP [dm6]	G	C	2.641e^-4	0.741	INTRON wb
2L	6141021	2L_6141021_SNP [dm3] 2L_6141021_SNP [dm6]	C	G	2.651e^-4	0.741	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5992974	2L_5992974_SNP [dm3] 2L_5992974_SNP [dm6]	G	A	2.652e^-4	0.741	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13178705	3L_13178705_SNP [dm3] 3L_13185605_SNP [dm6]	C	A	2.653e^-4	0.741	INTERGENIC
2R	15048954	2R_15048954_SNP [dm3] 2R_19161449_SNP [dm6]	T	G	2.655e^-4	0.741	INTRON ena
3L	15838628	3L_15838628_SNP [dm3] 3L_15845528_SNP [dm6]	A	G	2.655e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23320323	3R_23320323_SNP [dm3] 3R_27494601_SNP [dm6]	C	A	2.656e^-4	0.741	INTERGENIC
X	1939766	X_1939766_SNP [dm3] X_2045733_SNP [dm6]	T	G	2.664e^-4	0.741	NON_SYNONYMOUS_CODING moody INTRON CG4313	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9103177	3R_9103177_SNP [dm3] 3R_13277455_SNP [dm6]	A	G	2.675e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12817854	2L_12817854_SNP [dm3] 2L_12817854_SNP [dm6]	C	T	2.687e^-4	0.741	UTR_3_PRIME kek1
3L	6789665	3L_6789665_SNP [dm3] 3L_6796565_SNP [dm6]	T	G	2.688e^-4	0.741	INTERGENIC
3L	13676403	3L_13676403_SNP [dm3] 3L_13683303_SNP [dm6]	G	T	2.690e^-4	0.741	INTRON bru-3
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	2.691e^-4	0.741	INTRON X11Lbeta
3R	13179007	3R_13179007_SNP [dm3] 3R_17353285_SNP [dm6]	C	T	2.696e^-4	0.741	INTRON beat-IIa
3L	17167926	3L_17167926_DEL [dm3] 3L_17174826_DEL [dm6]	CTAT	C	2.698e^-4	0.741	INTRON Rbp6
X	19300276	X_19300276_SNP [dm3] X_19406243_SNP [dm6]	A	T	2.703e^-4	0.741	INTRON kek5
2L	15146841	2L_15146841_SNP [dm3] 2L_15146841_SNP [dm6]	A	T	2.709e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	637451	3L_637451_SNP [dm3] 3L_637451_SNP [dm6]	T	G	2.709e^-4	0.741	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
X	1669539	X_1669539_SNP [dm3] X_1775506_SNP [dm6]	A	G	2.709e^-4	0.741	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6549078	3L_6549078_SNP [dm3] 3L_6555978_SNP [dm6]	A	G	2.713e^-4	0.741	INTRON CG18769	TF binding site mE1_TFBS_inv
2R	9211283	2R_9211283_SNP [dm3] 2R_13323778_SNP [dm6]	G	A	2.719e^-4	0.741	INTERGENIC
3L	6649727	3L_6649727_DEL [dm3] 3L_6656627_DEL [dm6]	TG	C	2.721e^-4	0.741	INTERGENIC
3L	16040660	3L_16040660_SNP [dm3] 3L_16047560_SNP [dm6]	A	G	2.722e^-4	0.741	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4093229	3L_4093229_SNP [dm3] 3L_4093229_SNP [dm6]	C	T	2.730e^-4	0.741	UTR_5_PRIME CG14990 DOWNSTREAM CG14989	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3R	21710536	3R_21710536_SNP [dm3] 3R_25884814_SNP [dm6]	G	A	2.731e^-4	0.741	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	1667184	X_1667184_SNP [dm3] X_1773151_SNP [dm6]	A	T	2.752e^-4	0.741	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2463169	2L_2463169_SNP [dm3] 2L_2463169_SNP [dm6]	T	C	2.761e^-4	0.741	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3L	5093944	3L_5093944_SNP [dm3] 3L_5093944_SNP [dm6]	C	G	2.762e^-4	0.741	INTERGENIC
3L	11576954	3L_11576954_SNP [dm3] 3L_11583854_SNP [dm6]	C	A	2.765e^-4	0.741	NON_SYNONYMOUS_CODING CG32086 DOWNSTREAM rt
3L	6549027	3L_6549027_SNP [dm3] 3L_6555927_SNP [dm6]	G	A	2.771e^-4	0.741	INTRON CG18769	TF binding site mE1_TFBS_inv
3R	6455066	3R_6455066_SNP [dm3] 3R_10629344_SNP [dm6]	C	T	2.777e^-4	0.741	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15258745	2R_15258745_SNP [dm3] 2R_19371240_SNP [dm6]	A	G	2.786e^-4	0.741	INTRON CG9416	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	6351055	2L_6351055_SNP [dm3] 2L_6351055_SNP [dm6]	G	A	2.789e^-4	0.741	UPSTREAM CG9498 INTERGENIC
3L	461587	3L_461587_SNP [dm3] 3L_461587_SNP [dm6]	G	A	2.792e^-4	0.741	INTRON klar
3L	10081463	3L_10081463_SNP [dm3] 3L_10088363_SNP [dm6]	A	T	2.793e^-4	0.741	INTRON dpr6 & 1 other
3L	8537246	3L_8537246_SNP [dm3] 3L_8544146_SNP [dm6]	G	T	2.793e^-4	0.741	UPSTREAM rhea INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9087131	3R_9087131_SNP [dm3] 3R_13261409_SNP [dm6]	G	T	2.794e^-4	0.741	INTRON CG11686
2R	16174795	2R_16174795_SNP [dm3] 2R_20287290_SNP [dm6]	G	C	2.797e^-4	0.741	UPSTREAM CG34199 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	1999029	X_1999029_SNP [dm3] X_2104996_SNP [dm6]	G	A	2.801e^-4	0.741	INTRON csw
X	2303078	X_2303078_SNP [dm3] X_2409045_SNP [dm6]	A	C	2.802e^-4	0.741	DOWNSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10920124	X_10920124_SNP [dm3] X_11026091_SNP [dm6]	T	A	2.811e^-4	0.741	INTRON CG42339
3R	3107083	3R_3107083_SNP [dm3] 3R_7281361_SNP [dm6]	T	C	2.819e^-4	0.741	INTRON rn
3L	17679412	3L_17679412_SNP [dm3] 3L_17686312_SNP [dm6]	G	A	2.826e^-4	0.741	INTERGENIC
2L	15099128	2L_15099128_SNP [dm3] 2L_15099128_SNP [dm6]	G	C	2.829e^-4	0.741	INTERGENIC
3R	2512583	3R_2512583_SNP [dm3] 3R_6686861_SNP [dm6]	C	T	2.829e^-4	0.741	INTRON Ccp84Ag	TF binding site mE1_TFBS_inv
2L	14035631	2L_14035631_SNP [dm3] 2L_14035631_SNP [dm6]	C	T	2.833e^-4	0.741	EXON CR45284
3R	9066860	3R_9066860_SNP [dm3] 3R_13241138_SNP [dm6]	T	G	2.835e^-4	0.741	INTRON Ace
2R	10382857	2R_10382857_SNP [dm3] 2R_14495352_SNP [dm6]	C	A	2.846e^-4	0.741	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
X	10920111	X_10920111_SNP [dm3] X_11026078_SNP [dm6]	C	T	2.850e^-4	0.741	INTRON CG42339
2L	8759316	2L_8759316_SNP [dm3] 2L_8759316_SNP [dm6]	A	G	2.851e^-4	0.741	INTERGENIC
2R	16174771	2R_16174771_SNP [dm3] 2R_20287266_SNP [dm6]	A	T	2.851e^-4	0.741	UPSTREAM CG34199 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10560282	3R_10560282_SNP [dm3] 3R_14734560_SNP [dm6]	C	A	2.857e^-4	0.741	INTRON eff	TF binding site mE1_TFBS_Trl
X	17604020	X_17604020_SNP [dm3] X_17709987_SNP [dm6]	A	C	2.869e^-4	0.741	UPSTREAM CG42684 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8380062	3R_8380062_SNP [dm3] 3R_12554340_SNP [dm6]	G	A	2.875e^-4	0.741	SYNONYMOUS_CODING Octbeta2R
3L	6549081	3L_6549081_SNP [dm3] 3L_6555981_SNP [dm6]	G	A	2.878e^-4	0.741	INTRON CG18769	TF binding site mE1_TFBS_inv
3R	9107739	3R_9107739_SNP [dm3] 3R_13282017_SNP [dm6]	C	G	2.881e^-4	0.741	INTRON CG8630	TF binding site mE1_TFBS_chinmo
2R	13523349	2R_13523349_SNP [dm3] 2R_17635844_SNP [dm6]	G	C	2.891e^-4	0.741	INTRON CG10936
X	3815530	X_3815530_SNP [dm3] X_3921497_SNP [dm6]	C	T	2.895e^-4	0.741	INTRON CG42541
2R	11391626	2R_11391626_SNP [dm3] 2R_15504121_SNP [dm6]	A	G	2.899e^-4	0.741	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
X	18821162	X_18821162_SNP [dm3] X_18927129_SNP [dm6]	T	C	2.900e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6279172	3R_6279172_DEL [dm3] 3R_10453450_DEL [dm6]	ATTTAAA	A	2.902e^-4	0.741	INTERGENIC
X	13216352	X_13216352_SNP [dm3] X_13322319_SNP [dm6]	C	T	2.905e^-4	0.741	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14128952	2R_14128952_SNP [dm3] 2R_18241447_SNP [dm6]	C	T	2.912e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21710560	3R_21710560_SNP [dm3] 3R_25884838_SNP [dm6]	A	C	2.917e^-4	0.741	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12343488	3L_12343488_SNP [dm3] 3L_12350388_SNP [dm6]	T	C	2.919e^-4	0.741	INTRON CrzR
3R	23369241	3R_23369241_SNP [dm3] 3R_27543519_SNP [dm6]	C	T	2.920e^-4	0.741	SPLICE_SITE_REGION Gr98b UPSTREAM Gr98c INTRON Gr98b
X	20950202	X_20950202_SNP [dm3] X_21079175_SNP [dm6]	A	G	2.923e^-4	0.741	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl
2R	10461146	2R_10461146_SNP [dm3] 2R_14573641_SNP [dm6]	G	A	2.926e^-4	0.741	INTRON ttv & 1 other
2R	10527096	2R_10527096_SNP [dm3] 2R_14639591_SNP [dm6]	A	C	2.931e^-4	0.741	SYNONYMOUS_CODING CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_inv
3L	6312984	3L_6312984_SNP [dm3] 3L_6319884_SNP [dm6]	C	T	2.934e^-4	0.741	UPSTREAM Or65a INTERGENIC	regulatory region REDfly_CRMs
3L	17167938	3L_17167938_DEL [dm3] 3L_17174838_DEL [dm6]	TGT	T	2.944e^-4	0.741	INTRON Rbp6
3R	13523192	3R_13523192_SNP [dm3] 3R_17697470_SNP [dm6]	G	T	2.952e^-4	0.741	INTRON osa
2L	14310715	2L_14310715_SNP [dm3] 2L_14310715_SNP [dm6]	T	C	2.954e^-4	0.741	INTRON wb
3R	8555160	3R_8555160_SNP [dm3] 3R_12729438_SNP [dm6]	T	G	2.956e^-4	0.741	DOWNSTREAM CR44231 INTERGENIC
3R	9091825	3R_9091825_SNP [dm3] 3R_13266103_SNP [dm6]	T	C	2.959e^-4	0.741	NON_SYNONYMOUS_CODING Su_var_3-7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14397278	2R_14397278_SNP [dm3] 2R_18509773_SNP [dm6]	C	T	2.962e^-4	0.741	INTERGENIC
2L	15383234	2L_15383234_SNP [dm3] 2L_15383234_SNP [dm6]	A	T	2.968e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16654808	3R_16654808_SNP [dm3] 3R_20829086_SNP [dm6]	C	G	2.969e^-4	0.741	DOWNSTREAM CR44047 INTRON AdSS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12514668	2L_12514668_SNP [dm3] 2L_12514668_SNP [dm6]	T	A	2.969e^-4	0.741	INTRON bun
3R	7511128	3R_7511128_SNP [dm3] 3R_11685406_SNP [dm6]	T	C	2.972e^-4	0.741	SPLICE_SITE_REGION CG6834 INTRON CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	665026	2L_665026_INS [dm3] 2L_665026_INS [dm6]	G	GG	2.978e^-4	0.741	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19032343	3L_19032343_SNP [dm3] 3L_19039243_SNP [dm6]	G	A	2.979e^-4	0.741	INTRON nkd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12862250	3L_12862250_SNP [dm3] 3L_12869150_SNP [dm6]	C	T	2.980e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15317301	2R_15317301_SNP [dm3] 2R_19429796_SNP [dm6]	G	T	2.987e^-4	0.741	DOWNSTREAM CalpA & 1 other INTRON CalpA
2L	14307901	2L_14307901_SNP [dm3] 2L_14307901_SNP [dm6]	G	T	2.997e^-4	0.741	INTRON wb
2L	6351154	2L_6351154_SNP [dm3] 2L_6351154_SNP [dm6]	T	C	2.999e^-4	0.741	UPSTREAM CG9498 INTERGENIC
2L	14301886	2L_14301886_SNP [dm3] 2L_14301886_SNP [dm6]	T	A	3.001e^-4	0.741	INTRON wb
3L	7171551	3L_7171551_SNP [dm3] 3L_7178451_SNP [dm6]	C	A	3.001e^-4	0.741	INTRON Dscam2
X	9506123	X_9506123_SNP [dm3] X_9612090_SNP [dm6]	T	G	3.003e^-4	0.741	NON_SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16174770	2R_16174770_SNP [dm3] 2R_20287265_SNP [dm6]	A	G	3.008e^-4	0.741	UPSTREAM CG34199 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14474037	3L_14474037_SNP [dm3] 3L_14480937_SNP [dm6]	C	A	3.011e^-4	0.741	INTRON bbg
X	12343644	X_12343644_SNP [dm3] X_12449611_SNP [dm6]	G	A	3.011e^-4	0.741	INTRON Pkcdelta
3L	13481344	3L_13481344_SNP [dm3] 3L_13488244_SNP [dm6]	C	A	3.014e^-4	0.741	INTRON Tgi	TF binding site mE1_TFBS_D
2L	15770460	2L_15770460_SNP [dm3] 2L_15770460_SNP [dm6]	T	C	3.015e^-4	0.741	SYNONYMOUS_CODING Ku80 DOWNSTREAM CG31826
2R	9352299	2R_9352299_SNP [dm3] 2R_13464794_SNP [dm6]	A	G	3.016e^-4	0.741	INTRON arr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20959264	2L_20959264_INS [dm3] 2L_20959264_INS [dm6]	A	AA	3.017e^-4	0.741	INTERGENIC
2R	16572735	2R_16572735_SNP [dm3] 2R_20685230_SNP [dm6]	A	G	3.021e^-4	0.741	DOWNSTREAM Gr57a INTERGENIC
3R	6279249	3R_6279249_SNP [dm3] 3R_10453527_SNP [dm6]	A	T	3.022e^-4	0.741	INTERGENIC
3R	9276107	3R_9276107_SNP [dm3] 3R_13450385_SNP [dm6]	A	G	3.022e^-4	0.741	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	604372	3L_604372_SNP [dm3] 3L_604372_SNP [dm6]	T	C	3.022e^-4	0.741	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14310739	2L_14310739_SNP [dm3] 2L_14310739_SNP [dm6]	C	A	3.024e^-4	0.741	INTRON wb
3R	9092075	3R_9092075_SNP [dm3] 3R_13266353_SNP [dm6]	C	G	3.029e^-4	0.741	INTRON Su_var_3-7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1271777	2L_1271777_SNP [dm3] 2L_1271777_SNP [dm6]	C	T	3.041e^-4	0.741	INTRON robo3
X	19132991	X_19132991_SNP [dm3] X_19238958_SNP [dm6]	G	A	3.042e^-4	0.741	INTRON CG14196	TF binding site mE1_TFBS_sens
3L	24530988	3L_24530988_DEL [dm3] 3L_24537889_DEL [dm6]	TATT	T	3.043e^-4	0.741	INTRON mRpS5	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2R	2636612	2R_2636612_SNP [dm3] 2R_6749107_SNP [dm6]	A	T	3.045e^-4	0.741	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2L	3303866	2L_3303866_SNP [dm3] 2L_3303866_SNP [dm6]	C	G	3.045e^-4	0.741	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17663625	2R_17663625_SNP [dm3] 2R_21776120_SNP [dm6]	T	A	3.060e^-4	0.741	INTERGENIC
2R	20175764	2R_20175764_SNP [dm3] 2R_24288241_SNP [dm6]	A	G	3.061e^-4	0.741	NON_SYNONYMOUS_CODING nvy	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10216765	2R_10216765_SNP [dm3] 2R_14329260_SNP [dm6]	C	A	3.062e^-4	0.741	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
2L	9553535	2L_9553535_SNP [dm3] 2L_9553535_SNP [dm6]	A	G	3.066e^-4	0.741	INTRON jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8975496	3R_8975496_SNP [dm3] 3R_13149774_SNP [dm6]	C	T	3.067e^-4	0.741	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2R	15314859	2R_15314859_SNP [dm3] 2R_19427354_SNP [dm6]	A	C	3.069e^-4	0.741	INTRON CalpA
2R	7221118	2R_7221118_SNP [dm3] 2R_11333613_SNP [dm6]	T	C	3.075e^-4	0.741	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6253834	2L_6253834_SNP [dm3] 2L_6253834_SNP [dm6]	C	A	3.076e^-4	0.741	INTRON Ddr	TF binding site mE1_TFBS_Trl
3L	10090874	3L_10090874_SNP [dm3] 3L_10097774_SNP [dm6]	A	G	3.081e^-4	0.741	SYNONYMOUS_CODING CG42825 INTRON dpr6
X	10000225	X_10000225_SNP [dm3] X_10106192_SNP [dm6]	C	T	3.092e^-4	0.741	INTRON RhoU	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15314863	2R_15314863_SNP [dm3] 2R_19427358_SNP [dm6]	G	T	3.102e^-4	0.741	INTRON CalpA
2R	19466725	2R_19466725_SNP [dm3] 2R_23579202_SNP [dm6]	T	C	3.103e^-4	0.741	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5655395	2L_5655395_SNP [dm3] 2L_5655395_SNP [dm6]	T	G	3.105e^-4	0.741	INTRON CG31646	TF binding site mE1_TFBS_inv
X	3814063	X_3814063_SNP [dm3] X_3920030_SNP [dm6]	G	A	3.107e^-4	0.741	INTRON CG42541
3L	18826266	3L_18826266_SNP [dm3] 3L_18833166_SNP [dm6]	G	A	3.112e^-4	0.741	INTRON Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10215901	2R_10215901_SNP [dm3] 2R_14328396_SNP [dm6]	C	T	3.120e^-4	0.741	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10001289	2R_10001289_SNP [dm3] 2R_14113784_SNP [dm6]	A	G	3.121e^-4	0.741	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10349630	3R_10349630_SNP [dm3] 3R_14523908_SNP [dm6]	T	C	3.124e^-4	0.741	DOWNSTREAM Cyp313a1 INTRON Pde6
X	1999061	X_1999061_SNP [dm3] X_2105028_SNP [dm6]	T	G	3.124e^-4	0.741	INTRON csw
3L	5870843	3L_5870843_SNP [dm3] 3L_5877743_SNP [dm6]	C	A	3.129e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	26975	2R_26975_SNP [dm3] 2R_4139470_SNP [dm6]	G	T	3.131e^-4	0.741	INTERGENIC
3L	17128792	3L_17128792_SNP [dm3] 3L_17135692_SNP [dm6]	A	T	3.134e^-4	0.741	INTRON Rbp6
3L	2979271	3L_2979271_SNP [dm3] 3L_2979271_SNP [dm6]	T	G	3.139e^-4	0.741	INTERGENIC
2L	15757736	2L_15757736_SNP [dm3] 2L_15757736_SNP [dm6]	T	G	3.140e^-4	0.741	INTRON Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6302744	3R_6302744_SNP [dm3] 3R_10477022_SNP [dm6]	T	G	3.142e^-4	0.741	INTERGENIC
X	14518169	X_14518169_SNP [dm3] X_14624136_SNP [dm6]	T	C	3.148e^-4	0.741	INTRON NetA
X	1999141	X_1999141_SNP [dm3] X_2105108_SNP [dm6]	A	C	3.148e^-4	0.741	INTRON csw
3R	8975322	3R_8975322_SNP [dm3] 3R_13149600_SNP [dm6]	A	C	3.151e^-4	0.741	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	10088952	3L_10088952_SNP [dm3] 3L_10095852_SNP [dm6]	C	T	3.155e^-4	0.741	NON_SYNONYMOUS_CODING CG42825 INTRON dpr6
X	20403159	X_20403159_SNP [dm3] X_20532132_SNP [dm6]	C	G	3.155e^-4	0.741	INTERGENIC
3R	9052283	3R_9052283_SNP [dm3] 3R_13226561_SNP [dm6]	T	C	3.159e^-4	0.741	UTR_3_PRIME Ace INTRON Ace
2R	9244084	2R_9244084_SNP [dm3] 2R_13356579_SNP [dm6]	C	A	3.159e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	22186647	2L_22186647_SNP [dm3] 2L_22186647_SNP [dm6]	T	C	3.166e^-4	0.741	INTERGENIC
3L	6541015	3L_6541015_SNP [dm3] 3L_6547915_SNP [dm6]	G	T	3.167e^-4	0.741	INTRON sfl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8625549	2L_8625549_SNP [dm3] 2L_8625549_SNP [dm6]	T	G	3.168e^-4	0.741	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1228561	X_1228561_SNP [dm3] X_1334528_SNP [dm6]	T	G	3.173e^-4	0.741	INTRON CG11409
3R	18480533	3R_18480533_SNP [dm3] 3R_22654811_SNP [dm6]	C	T	3.176e^-4	0.741	INTRON CG45058
3L	8644987	3L_8644987_SNP [dm3] 3L_8651887_SNP [dm6]	G	T	3.177e^-4	0.741	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	10711427	3L_10711427_SNP [dm3] 3L_10718327_SNP [dm6]	A	T	3.178e^-4	0.741	INTERGENIC
3R	13858432	3R_13858432_SNP [dm3] 3R_18032710_SNP [dm6]	G	C	3.186e^-4	0.741	INTERGENIC
2R	14940649	2R_14940649_SNP [dm3] 2R_19053144_SNP [dm6]	A	G	3.187e^-4	0.741	INTERGENIC
3R	4248770	3R_4248770_SNP [dm3] 3R_8423048_SNP [dm6]	A	C	3.191e^-4	0.742	INTRON CG45263	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16154174	X_16154174_SNP [dm3] X_16260141_SNP [dm6]	T	C	3.204e^-4	0.742	INTERGENIC
3L	13666136	3L_13666136_SNP [dm3] 3L_13673036_SNP [dm6]	G	A	3.207e^-4	0.742	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6789752	3L_6789752_SNP [dm3] 3L_6796652_SNP [dm6]	T	A	3.215e^-4	0.742	INTERGENIC
2L	14308312	2L_14308312_SNP [dm3] 2L_14308312_SNP [dm6]	A	G	3.216e^-4	0.742	SYNONYMOUS_CODING wb INTRON wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11866147	2R_11866147_SNP [dm3] 2R_15978642_SNP [dm6]	C	G	3.232e^-4	0.742	NON_SYNONYMOUS_CODING Strn-Mlck
2R	11381135	2R_11381135_SNP [dm3] 2R_15493630_SNP [dm6]	G	A	3.240e^-4	0.742	INTRON CG12964
2R	20818776	2R_20818776_SNP [dm3] 2R_24931253_SNP [dm6]	G	T	3.246e^-4	0.742	DOWNSTREAM CG30427 INTRON CG30427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14708931	2L_14708931_SNP [dm3] 2L_14708931_SNP [dm6]	T	G	3.248e^-4	0.742	INTERGENIC
3L	1403502	3L_1403502_SNP [dm3] 3L_1403502_SNP [dm6]	C	G	3.248e^-4	0.742	INTRON Ptp61F
2R	13169977	2R_13169977_SNP [dm3] 2R_17282472_SNP [dm6]	C	T	3.254e^-4	0.742	INTRON mbl
X	2182186	X_2182186_SNP [dm3] X_2288153_SNP [dm6]	A	G	3.258e^-4	0.742	INTRON CG2865	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24627601	3R_24627601_SNP [dm3] 3R_28801879_SNP [dm6]	C	T	3.261e^-4	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19054243	X_19054243_INS [dm3] X_19160210_INS [dm6]	T	TGAAATAATTTATTACATCT...	3.262e^-4	0.742	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14937752	2R_14937752_SNP [dm3] 2R_19050247_SNP [dm6]	T	C	3.266e^-4	0.742	INTERGENIC
2R	11777821	2R_11777821_SNP [dm3] 2R_15890316_SNP [dm6]	C	T	3.267e^-4	0.742	SYNONYMOUS_CODING sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	10578649	2R_10578649_SNP [dm3] 2R_14691144_SNP [dm6]	C	T	3.269e^-4	0.742	INTRON mspo
2L	12925832	2L_12925832_SNP [dm3] 2L_12925832_SNP [dm6]	T	C	3.269e^-4	0.742	SYNONYMOUS_CODING ACXE DOWNSTREAM ACXA
2R	11767132	2R_11767132_SNP [dm3] 2R_15879627_SNP [dm6]	G	A	3.272e^-4	0.742	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10346434	3R_10346434_SNP [dm3] 3R_14520712_SNP [dm6]	A	G	3.274e^-4	0.742	UPSTREAM Cyp313a1 INTRON Pde6
3R	10560215	3R_10560215_SNP [dm3] 3R_14734493_SNP [dm6]	T	A	3.276e^-4	0.742	INTRON eff	TF binding site mE1_TFBS_Trl
3R	7673870	3R_7673870_SNP [dm3] 3R_11848148_SNP [dm6]	C	T	3.279e^-4	0.742	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7634325	2R_7634325_SNP [dm3] 2R_11746820_SNP [dm6]	A	G	3.282e^-4	0.742	INTERGENIC
2L	21968461	2L_21968461_SNP [dm3] 2L_21968461_SNP [dm6]	T	A	3.287e^-4	0.742	INTERGENIC
3R	3123989	3R_3123989_SNP [dm3] 3R_7298267_SNP [dm6]	G	C	3.291e^-4	0.742	INTRON rn
X	20677187	X_20677187_SNP [dm3] X_20806160_SNP [dm6]	C	T	3.305e^-4	0.742	INTRON shakB	transposable element FlyBase
2R	2877400	2R_2877400_SNP [dm3] 2R_6989895_SNP [dm6]	G	T	3.307e^-4	0.742	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
3R	9053481	3R_9053481_SNP [dm3] 3R_13227759_SNP [dm6]	G	T	3.308e^-4	0.742	UTR_3_PRIME Ace DOWNSTREAM Ace INTRON Ace
3R	17624947	3R_17624947_SNP [dm3] 3R_21799225_SNP [dm6]	T	C	3.308e^-4	0.742	UPSTREAM mir-999 & 1 other INTRON CASK
2R	2686906	2R_2686906_SNP [dm3] 2R_6799401_SNP [dm6]	A	T	3.309e^-4	0.742	UPSTREAM Epac INTERGENIC
3R	9116742	3R_9116742_SNP [dm3] 3R_13291020_SNP [dm6]	T	C	3.313e^-4	0.742	NON_SYNONYMOUS_CODING Osi22	TF binding site mE1_TFBS_chinmo
2L	12791197	2L_12791197_SNP [dm3] 2L_12791197_SNP [dm6]	A	G	3.316e^-4	0.742	INTERGENIC
2L	12514820	2L_12514820_SNP [dm3] 2L_12514820_SNP [dm6]	C	T	3.330e^-4	0.743	INTRON bun
2R	10324237	2R_10324237_SNP [dm3] 2R_14436732_SNP [dm6]	G	A	3.335e^-4	0.743	INTRON Oaz
2R	11737627	2R_11737627_SNP [dm3] 2R_15850122_SNP [dm6]	C	A	3.337e^-4	0.743	INTRON tun
2L	12925293	2L_12925293_SNP [dm3] 2L_12925293_SNP [dm6]	T	A	3.342e^-4	0.743	UTR_3_PRIME ACXA UPSTREAM ACXE
X	17116725	X_17116725_DEL [dm3] X_17222692_DEL [dm6]	CTAC	C	3.352e^-4	0.743	DOWNSTREAM CG34327 & 1 other INTERGENIC
2L	8711540	2L_8711540_SNP [dm3] 2L_8711540_SNP [dm6]	G	A	3.354e^-4	0.743	SYNONYMOUS_CODING raw
2R	13119267	2R_13119267_DEL [dm3] 2R_17231762_DEL [dm6]	CTAAGGCC	C	3.356e^-4	0.743	INTRON mbl
3L	9003312	3L_9003312_SNP [dm3] 3L_9010212_SNP [dm6]	C	A	3.356e^-4	0.743	UPSTREAM CG5194 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4255668	3R_4255668_SNP [dm3] 3R_8429946_SNP [dm6]	A	T	3.360e^-4	0.743	INTRON CG45263
2L	9930864	2L_9930864_SNP [dm3] 2L_9930864_SNP [dm6]	T	C	3.380e^-4	0.743	SYNONYMOUS_CODING CG42367 DOWNSTREAM CG42366	TF binding site mE1_TFBS_HSA
3L	8709872	3L_8709872_SNP [dm3] 3L_8716772_SNP [dm6]	T	C	3.384e^-4	0.743	INTERGENIC
3L	19104235	3L_19104235_SNP [dm3] 3L_19111135_SNP [dm6]	A	T	3.393e^-4	0.743	INTRON CG14082
3R	9109862	3R_9109862_SNP [dm3] 3R_13284140_SNP [dm6]	T	C	3.398e^-4	0.743	UTR_3_PRIME CG8630 DOWNSTREAM CG15888	TF binding site mE1_TFBS_cad
X	19077788	X_19077788_SNP [dm3] X_19183755_SNP [dm6]	T	C	3.401e^-4	0.743	UPSTREAM CG33253 INTRON CG33253	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16175655	2R_16175655_DEL [dm3] 2R_20288150_DEL [dm6]	ATGCAG	A	3.420e^-4	0.743	FRAME_SHIFT CG34199 DOWNSTREAM Cpr56F
X	1723464	X_1723464_SNP [dm3] X_1829431_SNP [dm6]	C	T	3.422e^-4	0.743	INTRON CG42666
3R	8975238	3R_8975238_SNP [dm3] 3R_13149516_SNP [dm6]	A	G	3.426e^-4	0.743	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	3669209	2L_3669209_SNP [dm3] 2L_3669209_SNP [dm6]	A	C	3.428e^-4	0.743	UPSTREAM Sfp24Ba & 1 other DOWNSTREAM Sfp24Bb & 1 other INTRON CG34340
3L	3551986	3L_3551986_SNP [dm3] 3L_3551986_SNP [dm6]	T	A	3.437e^-4	0.743	INTRON Eip63E
2R	12809985	2R_12809985_SNP [dm3] 2R_16922480_SNP [dm6]	T	A	3.439e^-4	0.743	INTERGENIC
3R	10345867	3R_10345867_SNP [dm3] 3R_14520145_SNP [dm6]	T	C	3.451e^-4	0.743	UPSTREAM Cyp313a1 INTRON Pde6
3L	5567615	3L_5567615_SNP [dm3] 3L_5574515_SNP [dm6]	T	C	3.458e^-4	0.743	INTRON Msr-110
2R	19913485	2R_19913485_DEL [dm3] 2R_24025962_DEL [dm6]	CA	C	3.463e^-4	0.743	UPSTREAM PebIII & 1 other DOWNSTREAM Adk2 INTERGENIC
X	3545176	X_3545176_DEL [dm3] X_3651143_DEL [dm6]	ATTATA	A	3.466e^-4	0.743	INTRON AstA-R1
3R	10516378	3R_10516378_SNP [dm3] 3R_14690656_SNP [dm6]	C	T	3.469e^-4	0.743	INTRON Meltrin
3L	6548983	3L_6548983_SNP [dm3] 3L_6555883_SNP [dm6]	A	G	3.476e^-4	0.743	INTRON CG18769	TF binding site mE1_TFBS_inv
2L	13909308	2L_13909308_SNP [dm3] 2L_13909308_SNP [dm6]	G	T	3.482e^-4	0.743	UPSTREAM Ance-2 DOWNSTREAM Ance INTERGENIC	TF binding site mE1_TFBS_cad
2R	14603119	2R_14603119_SNP [dm3] 2R_18715614_SNP [dm6]	C	G	3.485e^-4	0.743	INTERGENIC
2L	12442726	2L_12442726_SNP [dm3] 2L_12442726_SNP [dm6]	C	A	3.485e^-4	0.743	INTRON Oatp33Ea
3L	10011729	3L_10011729_SNP [dm3] 3L_10018629_SNP [dm6]	T	G	3.486e^-4	0.743	INTRON dpr6
2L	2147510	2L_2147510_INS [dm3] 2L_2147510_INS [dm6]	A	AACTGA	3.488e^-4	0.743	UPSTREAM CG7261 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10218404	2R_10218404_SNP [dm3] 2R_14330899_SNP [dm6]	A	T	3.492e^-4	0.743	INTRON Shroom
3L	7758117	3L_7758117_SNP [dm3] 3L_7765017_SNP [dm6]	A	T	3.493e^-4	0.743	SYNONYMOUS_CODING Clk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4000179	2L_4000179_SNP [dm3] 2L_4000179_SNP [dm6]	C	A	3.494e^-4	0.743	SYNONYMOUS_CODING CG43797 UPSTREAM CR45344
3R	9390682	3R_9390682_SNP [dm3] 3R_13564960_SNP [dm6]	T	A	3.496e^-4	0.743	INTERGENIC
3R	9078266	3R_9078266_SNP [dm3] 3R_13252544_SNP [dm6]	C	T	3.499e^-4	0.743	INTRON Ace
X	14519574	X_14519574_SNP [dm3] X_14625541_SNP [dm6]	A	G	3.502e^-4	0.743	INTRON NetA
2R	16174785	2R_16174785_SNP [dm3] 2R_20287280_SNP [dm6]	A	G	3.510e^-4	0.743	UPSTREAM CG34199 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9551516	3R_9551516_SNP [dm3] 3R_13725794_SNP [dm6]	C	T	3.516e^-4	0.743	INTRON CG34383
2L	14708927	2L_14708927_SNP [dm3] 2L_14708927_SNP [dm6]	G	C	3.517e^-4	0.743	INTERGENIC
3L	18515505	3L_18515505_SNP [dm3] 3L_18522405_SNP [dm6]	A	T	3.519e^-4	0.743	INTERGENIC
X	13163641	X_13163641_SNP [dm3] X_13269608_SNP [dm6]	G	T	3.524e^-4	0.743	INTRON HDAC4
X	17116780	X_17116780_SNP [dm3] X_17222747_SNP [dm6]	G	T	3.534e^-4	0.743	DOWNSTREAM CG34327 & 1 other INTERGENIC
2R	18595547	2R_18595547_SNP [dm3] 2R_22708042_SNP [dm6]	T	C	3.538e^-4	0.743	SYNONYMOUS_CODING CG30275 DOWNSTREAM Obp58d EXON CR43735
3R	9045116	3R_9045116_SNP [dm3] 3R_13219394_SNP [dm6]	T	C	3.550e^-4	0.743	DOWNSTREAM CG8476 INTERGENIC
X	9774916	X_9774916_INS [dm3] X_9880883_INS [dm6]	A	ATTT	3.558e^-4	0.743	DOWNSTREAM CG9686 INTERGENIC
2L	9754881	2L_9754881_SNP [dm3] 2L_9754881_SNP [dm6]	G	A	3.572e^-4	0.743	INTERGENIC
2R	12523322	2R_12523322_SNP [dm3] 2R_16635817_SNP [dm6]	C	T	3.572e^-4	0.743	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2L	9923669	2L_9923669_SNP [dm3] 2L_9923669_SNP [dm6]	A	G	3.573e^-4	0.743	SYNONYMOUS_CODING TbCMF46 DOWNSTREAM CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18302204	3R_18302204_SNP [dm3] 3R_22476482_SNP [dm6]	C	A	3.577e^-4	0.743	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15142808	2L_15142808_SNP [dm3] 2L_15142808_SNP [dm6]	T	A	3.578e^-4	0.743	INTERGENIC
3R	9066989	3R_9066989_INS [dm3] 3R_13241267_INS [dm6]	T	TT	3.580e^-4	0.743	INTRON Ace
X	13333102	X_13333102_SNP [dm3] X_13439069_SNP [dm6]	G	C	3.582e^-4	0.743	INTERGENIC
2R	16576803	2R_16576803_SNP [dm3] 2R_20689298_SNP [dm6]	T	C	3.584e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4244281	X_4244281_SNP [dm3] X_4350248_SNP [dm6]	T	A	3.588e^-4	0.743	INTRON norpA
2R	10218393	2R_10218393_SNP [dm3] 2R_14330888_SNP [dm6]	A	C	3.590e^-4	0.743	INTRON Shroom
X	18363109	X_18363109_SNP [dm3] X_18469076_SNP [dm6]	C	T	3.603e^-4	0.743	INTRON CG32547
X	4588388	X_4588388_SNP [dm3] X_4694355_SNP [dm6]	A	G	3.604e^-4	0.743	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16773113	3L_16773113_SNP [dm3] 3L_16780013_SNP [dm6]	G	C	3.604e^-4	0.743	UPSTREAM CG9705 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	1241510	X_1241510_SNP [dm3] X_1347477_SNP [dm6]	G	A	3.617e^-4	0.743	SYNONYMOUS_CODING Tsp2A INTRON CG11418	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3501693	3L_3501693_SNP [dm3] 3L_3501693_SNP [dm6]	G	T	3.623e^-4	0.743	INTRON CG42324
3R	6330758	3R_6330758_SNP [dm3] 3R_10505036_SNP [dm6]	G	C	3.636e^-4	0.743	INTERGENIC
X	15298316	X_15298316_SNP [dm3] X_15404283_SNP [dm6]	C	T	3.636e^-4	0.743	INTRON Cngl
X	1999038	X_1999038_SNP [dm3] X_2105005_SNP [dm6]	C	T	3.651e^-4	0.743	INTRON csw
2L	7957262	2L_7957262_SNP [dm3] 2L_7957262_SNP [dm6]	A	T	3.653e^-4	0.743	INTRON Snoo
2L	14318888	2L_14318888_SNP [dm3] 2L_14318888_SNP [dm6]	A	C	3.655e^-4	0.743	INTRON wb	TF binding site mE1_TFBS_bab1
X	20573725	X_20573725_SNP [dm3] X_20702698_SNP [dm6]	T	A	3.656e^-4	0.743	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9145955	3R_9145955_SNP [dm3] 3R_13320233_SNP [dm6]	G	A	3.664e^-4	0.743	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	10362031	3R_10362031_INS [dm3] 3R_14536309_INS [dm6]	A	AT	3.666e^-4	0.743	INTRON Pde6
3R	2512603	3R_2512603_SNP [dm3] 3R_6686881_SNP [dm6]	C	T	3.667e^-4	0.743	INTRON Ccp84Ag	TF binding site mE1_TFBS_inv
2R	12994810	2R_12994810_SNP [dm3] 2R_17107305_SNP [dm6]	G	C	3.670e^-4	0.743	UTR_3_PRIME CG30456	TF binding site mE1_TFBS_cad
2L	8661878	2L_8661878_SNP [dm3] 2L_8661878_SNP [dm6]	T	A	3.671e^-4	0.743	INTRON Sema-1a
2L	5479292	2L_5479292_DEL [dm3] 2L_5479292_DEL [dm6]	TG	T	3.680e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10016008	3L_10016008_SNP [dm3] 3L_10022908_SNP [dm6]	G	A	3.686e^-4	0.743	INTRON dpr6
X	7150867	X_7150867_SNP [dm3] X_7256834_SNP [dm6]	C	T	3.689e^-4	0.743	INTRON CR44357
2R	9099092	2R_9099092_SNP [dm3] 2R_13211587_SNP [dm6]	T	A	3.696e^-4	0.743	SPLICE_SITE_REGION CG30058 & 2 others UPSTREAM CG34312 & 1 other DOWNSTREAM AQP INTRON CG30058 & 2 others
3R	4255942	3R_4255942_SNP [dm3] 3R_8430220_SNP [dm6]	T	A	3.696e^-4	0.743	INTRON CG45263
3R	18266920	3R_18266920_SNP [dm3] 3R_22441198_SNP [dm6]	G	A	3.698e^-4	0.743	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
2L	13766361	2L_13766361_SNP [dm3] 2L_13766361_SNP [dm6]	C	T	3.701e^-4	0.743	INTRON TM9SF4
3L	10077429	3L_10077429_SNP [dm3] 3L_10084329_SNP [dm6]	A	G	3.705e^-4	0.743	INTRON dpr6
2R	6735422	2R_6735422_SNP [dm3] 2R_10847917_SNP [dm6]	T	C	3.705e^-4	0.743	INTRON CG30015
2L	2207873	2L_2207873_SNP [dm3] 2L_2207873_SNP [dm6]	G	T	3.714e^-4	0.743	NON_SYNONYMOUS_CODING CG33124
X	17175125	X_17175125_SNP [dm3] X_17281092_SNP [dm6]	A	G	3.714e^-4	0.743	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
X	1673952	X_1673952_INS [dm3] X_1779919_INS [dm6]	T	TGT	3.718e^-4	0.743	UTR_3_PRIME Adar INTRON CG42666 & 1 other
3R	21436594	3R_21436594_SNP [dm3] 3R_25610872_SNP [dm6]	A	T	3.722e^-4	0.743	DOWNSTREAM Npl4 INTERGENIC
3R	19429309	3R_19429309_SNP [dm3] 3R_23603587_SNP [dm6]	A	G	3.729e^-4	0.743	SYNONYMOUS_CODING CG10184	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6452685	3R_6452685_SNP [dm3] 3R_10626963_SNP [dm6]	T	C	3.736e^-4	0.743	INTRON hth	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9027169	3R_9027169_SNP [dm3] 3R_13201447_SNP [dm6]	G	A	3.736e^-4	0.743	INTERGENIC
3R	17624917	3R_17624917_SNP [dm3] 3R_21799195_SNP [dm6]	G	T	3.737e^-4	0.743	UPSTREAM mir-999 & 1 other INTRON CASK
3L	7087034	3L_7087034_SNP [dm3] 3L_7093934_SNP [dm6]	C	G	3.739e^-4	0.743	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13259448	X_13259448_SNP [dm3] X_13365415_SNP [dm6]	C	G	3.740e^-4	0.743	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19548153	2R_19548153_SNP [dm3] 2R_23660630_SNP [dm6]	T	C	3.742e^-4	0.743	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	19548155	2R_19548155_SNP [dm3] 2R_23660632_SNP [dm6]	C	G	3.742e^-4	0.743	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	13767692	2R_13767692_SNP [dm3] 2R_17880187_SNP [dm6]	C	T	3.744e^-4	0.743	UPSTREAM CG30325 DOWNSTREAM CG30110 INTRON Elk
2R	18192667	2R_18192667_SNP [dm3] 2R_22305162_SNP [dm6]	A	C	3.746e^-4	0.743	INTRON wdp
2R	17104510	2R_17104510_SNP [dm3] 2R_21217005_SNP [dm6]	G	A	3.747e^-4	0.743	DOWNSTREAM ASPP INTRON CG15661	TF binding site mE1_TFBS_cad
2L	3375145	2L_3375145_SNP [dm3] 2L_3375145_SNP [dm6]	A	G	3.748e^-4	0.743	SYNONYMOUS_CODING CG15412 DOWNSTREAM CG9662	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	2304501	2L_2304501_SNP [dm3] 2L_2304501_SNP [dm6]	A	G	3.749e^-4	0.743	INTERGENIC
X	8259724	X_8259724_SNP [dm3] X_8365691_SNP [dm6]	A	T	3.754e^-4	0.743	UTR_5_PRIME nAChRalpha3
X	17174233	X_17174233_SNP [dm3] X_17280200_SNP [dm6]	C	T	3.757e^-4	0.743	NON_SYNONYMOUS_CODING f DOWNSTREAM CG8664
3R	5048712	3R_5048712_SNP [dm3] 3R_9222990_SNP [dm6]	C	T	3.760e^-4	0.743	INTRON pum
3R	21710535	3R_21710535_SNP [dm3] 3R_25884813_SNP [dm6]	A	C	3.764e^-4	0.743	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9298836	2L_9298836_SNP [dm3] 2L_9298836_SNP [dm6]	G	C	3.765e^-4	0.743	UTR_3_PRIME Ggamma30A
3R	7798152	3R_7798152_SNP [dm3] 3R_11972430_SNP [dm6]	G	T	3.766e^-4	0.743	SYNONYMOUS_CODING GC2 DOWNSTREAM GC1 & 1 other
3L	12851820	3L_12851820_SNP [dm3] 3L_12858720_SNP [dm6]	G	T	3.768e^-4	0.743	NON_SYNONYMOUS_CODING CG32107
3L	8537114	3L_8537114_SNP [dm3] 3L_8544014_SNP [dm6]	G	A	3.769e^-4	0.743	UPSTREAM rhea INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2873909	3L_2873909_SNP [dm3] 3L_2873909_SNP [dm6]	A	T	3.773e^-4	0.743	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	15437740	X_15437740_SNP [dm3] X_15543707_SNP [dm6]	C	T	3.778e^-4	0.743	INTRON Ac13E
2L	14316662	2L_14316662_SNP [dm3] 2L_14316662_SNP [dm6]	T	A	3.779e^-4	0.743	INTRON wb
2L	13343213	2L_13343213_SNP [dm3] 2L_13343213_SNP [dm6]	T	A	3.780e^-4	0.743	INTERGENIC
3R	24355441	3R_24355441_SNP [dm3] 3R_28529719_SNP [dm6]	C	A	3.782e^-4	0.743	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3L	13465807	3L_13465807_SNP [dm3] 3L_13472707_SNP [dm6]	T	C	3.786e^-4	0.743	INTRON CG10089
2L	8664864	2L_8664864_SNP [dm3] 2L_8664864_SNP [dm6]	T	C	3.791e^-4	0.743	INTRON Sema-1a
2R	10375134	2R_10375134_SNP [dm3] 2R_14487629_SNP [dm6]	A	T	3.794e^-4	0.743	INTRON L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13463115	3L_13463115_SNP [dm3] 3L_13470015_SNP [dm6]	G	A	3.795e^-4	0.743	UPSTREAM CG10089 INTRON CG10089	TF binding site mE1_TFBS_chinmo
2R	12402510	2R_12402510_SNP [dm3] 2R_16515005_SNP [dm6]	A	G	3.807e^-4	0.743	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	4585404	X_4585404_SNP [dm3] X_4691371_SNP [dm6]	T	A	3.808e^-4	0.743	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12100644	2R_12100644_SNP [dm3] 2R_16213139_SNP [dm6]	C	G	3.812e^-4	0.743	INTRON mrj	TF binding site mE1_TFBS_inv
3L	15476606	3L_15476606_SNP [dm3] 3L_15483506_SNP [dm6]	G	C	3.815e^-4	0.743	DOWNSTREAM Ran-like INTERGENIC
2L	3755771	2L_3755771_SNP [dm3] 2L_3755771_SNP [dm6]	G	A	3.817e^-4	0.743	INTERGENIC
2R	9653854	2R_9653854_SNP [dm3] 2R_13766349_SNP [dm6]	T	C	3.826e^-4	0.743	INTERGENIC
2L	12900678	2L_12900678_SNP [dm3] 2L_12900678_SNP [dm6]	A	G	3.830e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12766169	2L_12766169_SNP [dm3] 2L_12766169_SNP [dm6]	A	G	3.832e^-4	0.743	INTERGENIC
2L	13043910	2L_13043910_SNP [dm3] 2L_13043910_SNP [dm6]	G	T	3.835e^-4	0.743	INTRON CG9932
2R	20479390	2R_20479390_DEL [dm3] 2R_24591867_DEL [dm6]	GT	A	3.838e^-4	0.743	INTRON pio	TF binding site mE1_TFBS_chinmo
3L	17558667	3L_17558667_SNP [dm3] 3L_17565567_SNP [dm6]	T	C	3.845e^-4	0.743	NON_SYNONYMOUS_CODING Eip74EF DOWNSTREAM snoRNA:Me28S-A576
3R	22435330	3R_22435330_SNP [dm3] 3R_26609608_SNP [dm6]	A	G	3.853e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10210855	2R_10210855_SNP [dm3] 2R_14323350_SNP [dm6]	G	A	3.854e^-4	0.743	INTRON Shroom
3R	9151708	3R_9151708_SNP [dm3] 3R_13325986_SNP [dm6]	A	G	3.855e^-4	0.743	INTERGENIC
3L	13533477	3L_13533477_SNP [dm3] 3L_13540377_SNP [dm6]	A	G	3.856e^-4	0.743	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22805661	3R_22805661_SNP [dm3] 3R_26979939_SNP [dm6]	T	C	3.857e^-4	0.743	UPSTREAM CG14253 INTRON CG14253	TF binding site mE1_TFBS_Trl
3L	13481367	3L_13481367_SNP [dm3] 3L_13488267_SNP [dm6]	T	A	3.859e^-4	0.743	INTRON Tgi	TF binding site mE1_TFBS_D
2L	8304503	2L_8304503_SNP [dm3] 2L_8304503_SNP [dm6]	T	C	3.875e^-4	0.743	SYNONYMOUS_CODING Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12767260	2L_12767260_SNP [dm3] 2L_12767260_SNP [dm6]	T	C	3.878e^-4	0.743	INTERGENIC	TF binding site mE1_TFBS_Stat92E
2R	16739547	2R_16739547_SNP [dm3] 2R_20852042_SNP [dm6]	A	C	3.886e^-4	0.743	NON_SYNONYMOUS_CODING CG9993
3L	13383871	3L_13383871_SNP [dm3] 3L_13390771_SNP [dm6]	T	C	3.893e^-4	0.743	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	22519816	3R_22519816_SNP [dm3] 3R_26694094_SNP [dm6]	T	A	3.904e^-4	0.743	UPSTREAM TwdlQ INTERGENIC
X	10279611	X_10279611_SNP [dm3] X_10385578_SNP [dm6]	G	A	3.905e^-4	0.743	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2000000	3L_2000000_SNP [dm3] 3L_2000000_SNP [dm6]	G	C	3.906e^-4	0.743	INTERGENIC
3L	6549082	3L_6549082_SNP [dm3] 3L_6555982_SNP [dm6]	A	T	3.912e^-4	0.743	INTRON CG18769	TF binding site mE1_TFBS_inv
2L	3280667	2L_3280667_SNP [dm3] 2L_3280667_SNP [dm6]	C	A	3.912e^-4	0.743	UPSTREAM CG3332 INTERGENIC
3L	2001295	3L_2001295_SNP [dm3] 3L_2001295_SNP [dm6]	G	T	3.916e^-4	0.743	INTERGENIC
3R	25633877	3R_25633877_SNP [dm3] 3R_29808155_SNP [dm6]	A	G	3.921e^-4	0.743	NON_SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	10345983	3R_10345983_SNP [dm3] 3R_14520261_SNP [dm6]	G	A	3.924e^-4	0.743	UPSTREAM Cyp313a1 INTRON Pde6
2R	18716251	2R_18716251_SNP [dm3] 2R_22828728_SNP [dm6]	A	G	3.925e^-4	0.743	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274 UPSTREAM CG30272
3L	10216285	3L_10216285_SNP [dm3] 3L_10223185_SNP [dm6]	C	A	3.931e^-4	0.743	NON_SYNONYMOUS_CODING scramb1 UTR_5_PRIME scramb1 INTRON scramb1
3R	4246658	3R_4246658_SNP [dm3] 3R_8420936_SNP [dm6]	A	C	3.931e^-4	0.743	UPSTREAM Obp85a INTRON CG45263
3L	604341	3L_604341_SNP [dm3] 3L_604341_SNP [dm6]	T	C	3.935e^-4	0.743	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15124473	2L_15124473_INS [dm3] 2L_15124473_INS [dm6]	A	ACA	3.935e^-4	0.743	INTERGENIC
2L	15124477	2L_15124477_INS [dm3] 2L_15124477_INS [dm6]	T	TAACTAAGT	3.935e^-4	0.743	INTERGENIC
X	4494874	X_4494874_SNP [dm3] X_4600841_SNP [dm6]	A	T	3.938e^-4	0.743	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3L	6789736	3L_6789736_SNP [dm3] 3L_6796636_SNP [dm6]	A	T	3.944e^-4	0.743	INTERGENIC
2L	12514664	2L_12514664_DEL [dm3] 2L_12514664_DEL [dm6]	TTC	T	3.946e^-4	0.743	INTRON bun
3R	25213787	3R_25213787_SNP [dm3] 3R_29388065_SNP [dm6]	G	A	3.969e^-4	0.743	INTRON Ptp99A
3R	14203839	3R_14203839_SNP [dm3] 3R_18378117_SNP [dm6]	C	A	3.970e^-4	0.743	DOWNSTREAM CG7675 INTERGENIC	TF binding site mE1_TFBS_cad
2L	1281183	2L_1281183_SNP [dm3] 2L_1281183_SNP [dm6]	C	A	3.971e^-4	0.743	INTRON robo3
2L	14319615	2L_14319615_SNP [dm3] 2L_14319615_SNP [dm6]	C	T	3.977e^-4	0.743	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	14611881	2R_14611881_SNP [dm3] 2R_18724376_SNP [dm6]	G	T	3.978e^-4	0.743	INTRON Hs3st-A
3R	25633717	3R_25633717_SNP [dm3] 3R_29807995_SNP [dm6]	G	A	3.980e^-4	0.743	SYNONYMOUS_CODING ca UPSTREAM ncd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10214943	2R_10214943_SNP [dm3] 2R_14327438_SNP [dm6]	G	A	3.981e^-4	0.743	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14656794	3L_14656794_SNP [dm3] 3L_14663694_SNP [dm6]	A	C	3.984e^-4	0.743	INTRON dlp
3R	24120974	3R_24120974_SNP [dm3] 3R_28295252_SNP [dm6]	G	T	3.984e^-4	0.743	DOWNSTREAM CG17856 EXON CR44229

By genomic position
Variant impact
Gene name

mn_BoutLength_Day phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results