DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.206e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01176

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.8806	0.0194

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2578 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	18371244	3R_18371244_SNP [dm3] 3R_22545522_SNP [dm6]	C	A	1.135e^-6	0.581	INTRON AdipoR
3R	22252607	3R_22252607_SNP [dm3] 3R_26426885_SNP [dm6]	A	G	1.829e^-6	0.581	INTRON CR31084
X	13881108	X_13881108_SNP [dm3] X_13987075_SNP [dm6]	T	G	1.856e^-6	0.581	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10807799	3L_10807799_SNP [dm3] 3L_10814699_SNP [dm6]	C	T	2.113e^-6	0.581	UPSTREAM CG42831 INTERGENIC
3R	22245397	3R_22245397_SNP [dm3] 3R_26419675_SNP [dm6]	C	G	2.274e^-6	0.581	INTERGENIC
3R	5025546	3R_5025546_SNP [dm3] 3R_9199824_SNP [dm6]	G	T	2.673e^-6	0.581	INTRON pum
X	21185837	X_21185837_SNP [dm3] X_21314810_SNP [dm6]	A	T	2.754e^-6	0.581	INTRON CG1801
3L	22370177	3L_22370177_SNP [dm3] 3L_22377077_SNP [dm6]	T	A	2.806e^-6	0.581	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9409319	2R_9409319_SNP [dm3] 2R_13521814_SNP [dm6]	A	G	3.623e^-6	0.581	UTR_5_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
2R	8439063	2R_8439063_SNP [dm3] 2R_12551558_SNP [dm6]	A	G	4.368e^-6	0.581	INTRON fra
2L	9346044	2L_9346044_SNP [dm3] 2L_9346044_SNP [dm6]	C	T	4.702e^-6	0.581	INTERGENIC
3R	16702824	3R_16702824_SNP [dm3] 3R_20877102_SNP [dm6]	A	C	4.953e^-6	0.581	UPSTREAM TotZ INTERGENIC
2L	9720837	2L_9720837_SNP [dm3] 2L_9720837_SNP [dm6]	T	G	5.009e^-6	0.581	INTRON Nckx30C
2R	13544141	2R_13544141_DEL [dm3] 2R_17656636_DEL [dm6]	AA	A	5.300e^-6	0.581	INTRON CCHa1-R
2R	10523774	2R_10523774_DEL [dm3] 2R_14636269_DEL [dm6]	AG	A	5.994e^-6	0.581	INTERGENIC
X	7893476	X_7893476_SNP [dm3] X_7999443_SNP [dm6]	T	C	6.103e^-6	0.581	NON_SYNONYMOUS_CODING Tbh
3R	18371243	3R_18371243_SNP [dm3] 3R_22545521_SNP [dm6]	A	C	6.145e^-6	0.581	INTRON AdipoR
2L	19874712	2L_19874712_SNP [dm3] 2L_19874712_SNP [dm6]	T	C	6.308e^-6	0.581	INTRON sick	TF binding site mE1_TFBS_cad
2R	12113255	2R_12113255_SNP [dm3] 2R_16225750_SNP [dm6]	A	G	6.359e^-6	0.581	UPSTREAM CG15706 & 1 other INTRON CG15706
2R	10549540	2R_10549540_DEL [dm3] 2R_14662035_DEL [dm6]	GT	G	7.163e^-6	0.581	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12865951	X_12865951_SNP [dm3] X_12971918_SNP [dm6]	A	T	7.738e^-6	0.581	SYNONYMOUS_CODING CG15721 INTRON CR43636
X	10213337	X_10213337_SNP [dm3] X_10319304_SNP [dm6]	A	G	8.395e^-6	0.581	INTRON alpha-Man-I
3R	24807531	3R_24807531_SNP [dm3] 3R_28981809_SNP [dm6]	C	G	8.490e^-6	0.581	INTERGENIC
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	8.715e^-6	0.581	INTRON AdipoR
2R	10523777	2R_10523777_SNP [dm3] 2R_14636272_SNP [dm6]	T	A	8.781e^-6	0.581	INTERGENIC
3R	19066380	3R_19066380_SNP [dm3] 3R_23240658_SNP [dm6]	G	A	8.885e^-6	0.581	UPSTREAM CG4467 INTRON CG4467
3L	22404404	3L_22404404_SNP [dm3] 3L_22411304_SNP [dm6]	G	T	9.104e^-6	0.581	INTERGENIC
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	9.158e^-6	0.581	INTRON AdipoR
X	16939659	X_16939659_SNP [dm3] X_17045626_SNP [dm6]	T	C	9.393e^-6	0.581	INTRON CG45002
2L	18812043	2L_18812043_SNP [dm3] 2L_18812043_SNP [dm6]	T	A	9.492e^-6	0.581	UPSTREAM CG10570 & 3 others INTERGENIC
2R	12792827	2R_12792827_SNP [dm3] 2R_16905322_SNP [dm6]	T	C	9.704e^-6	0.581	INTERGENIC
3R	5025564	3R_5025564_SNP [dm3] 3R_9199842_SNP [dm6]	T	A	9.921e^-6	0.581	INTRON pum
3L	7203517	3L_7203517_SNP [dm3] 3L_7210417_SNP [dm6]	C	T	1.038e^-5	0.583	INTERGENIC
X	17729160	X_17729160_INS [dm3] X_17835127_INS [dm6]	T	TT	1.057e^-5	0.583	INTRON CG6398
3R	22245491	3R_22245491_SNP [dm3] 3R_26419769_SNP [dm6]	A	T	1.149e^-5	0.598	INTERGENIC
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	1.149e^-5	0.598	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17188663	3L_17188663_SNP [dm3] 3L_17195563_SNP [dm6]	C	T	1.228e^-5	0.601	INTRON Rbp6	TF binding site mE1_TFBS_inv
2L	9819407	2L_9819407_SNP [dm3] 2L_9819407_SNP [dm6]	A	G	1.254e^-5	0.601	INTRON nAChRalpha6
X	12865993	X_12865993_SNP [dm3] X_12971960_SNP [dm6]	C	T	1.281e^-5	0.601	SYNONYMOUS_CODING CG15721 INTRON CR43636
2R	12113265	2R_12113265_SNP [dm3] 2R_16225760_SNP [dm6]	T	A	1.325e^-5	0.601	UPSTREAM CG15706 & 1 other INTRON CG15706
3L	10362545	3L_10362545_SNP [dm3] 3L_10369445_SNP [dm6]	A	G	1.393e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14647306	3R_14647306_SNP [dm3] 3R_18821584_SNP [dm6]	A	T	1.451e^-5	0.601	INTRON CG18208
3L	2575378	3L_2575378_SNP [dm3] 3L_2575378_SNP [dm6]	G	A	1.527e^-5	0.601	INTRON msn
3L	2575382	3L_2575382_SNP [dm3] 3L_2575382_SNP [dm6]	T	A	1.527e^-5	0.601	INTRON msn
2L	13559468	2L_13559468_SNP [dm3] 2L_13559468_SNP [dm6]	C	T	1.542e^-5	0.601	INTRON kuz
X	20461186	X_20461186_SNP [dm3] X_20590159_SNP [dm6]	T	C	1.582e^-5	0.601	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	3138349	3R_3138349_SNP [dm3] 3R_7312627_SNP [dm6]	C	A	1.585e^-5	0.601	EXON CR44334	TF binding site BDTNP1_TFBS_dl
2R	16454537	2R_16454537_SNP [dm3] 2R_20567032_SNP [dm6]	T	C	1.642e^-5	0.601	INTRON qsm
3L	2875573	3L_2875573_SNP [dm3] 3L_2875573_SNP [dm6]	G	A	1.689e^-5	0.601	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2575377	3L_2575377_SNP [dm3] 3L_2575377_SNP [dm6]	T	A	1.693e^-5	0.601	INTRON msn
X	6388493	X_6388493_SNP [dm3] X_6494460_SNP [dm6]	G	A	1.759e^-5	0.601	INTRON CG42340
3L	1994481	3L_1994481_SNP [dm3] 3L_1994481_SNP [dm6]	C	T	1.775e^-5	0.601	INTERGENIC
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	1.901e^-5	0.601	INTRON sick
3L	9604221	3L_9604221_SNP [dm3] 3L_9611121_SNP [dm6]	A	G	1.919e^-5	0.601	INTRON CG3280
X	21153374	X_21153374_SNP [dm3] X_21282347_SNP [dm6]	A	G	1.942e^-5	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15317694	X_15317694_SNP [dm3] X_15423661_SNP [dm6]	C	T	1.985e^-5	0.601	INTRON Cngl
3L	15365140	3L_15365140_SNP [dm3] 3L_15372040_SNP [dm6]	T	A	1.986e^-5	0.601	INTERGENIC
2L	19880241	2L_19880241_DEL [dm3] 2L_19880241_DEL [dm6]	TAAATGGCCT	T	2.029e^-5	0.601	INTRON sick
2R	17616842	2R_17616842_SNP [dm3] 2R_21729337_SNP [dm6]	G	A	2.041e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_cad
3L	22469585	3L_22469585_SNP [dm3] 3L_22476485_SNP [dm6]	T	C	2.102e^-5	0.601	DOWNSTREAM CG11425 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6848572	2R_6848572_SNP [dm3] 2R_10961067_SNP [dm6]	T	C	2.104e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17729205	X_17729205_SNP [dm3] X_17835172_SNP [dm6]	A	T	2.135e^-5	0.601	INTRON CG6398
3L	9491899	3L_9491899_SNP [dm3] 3L_9498799_SNP [dm6]	T	C	2.184e^-5	0.601	INTRON path
3R	19378416	3R_19378416_SNP [dm3] 3R_23552694_SNP [dm6]	G	A	2.297e^-5	0.601	INTERGENIC
X	12865927	X_12865927_SNP [dm3] X_12971894_SNP [dm6]	A	T	2.324e^-5	0.601	SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	11948964	3L_11948964_SNP [dm3] 3L_11955864_SNP [dm6]	C	T	2.347e^-5	0.601	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3R	20565879	3R_20565879_SNP [dm3] 3R_24740157_SNP [dm6]	T	G	2.363e^-5	0.601	INTRON tok
2L	9346013	2L_9346013_SNP [dm3] 2L_9346013_SNP [dm6]	T	C	2.387e^-5	0.601	INTERGENIC
3L	10362588	3L_10362588_SNP [dm3] 3L_10369488_SNP [dm6]	T	A	2.529e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16420571	2R_16420571_SNP [dm3] 2R_20533066_SNP [dm6]	A	T	2.569e^-5	0.601	UPSTREAM CG30154 DOWNSTREAM CR44651 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	21188715	X_21188715_SNP [dm3] X_21317688_SNP [dm6]	T	A	2.578e^-5	0.601	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
3R	23546655	3R_23546655_SNP [dm3] 3R_27720933_SNP [dm6]	G	A	2.598e^-5	0.601	INTERGENIC
3L	22354018	3L_22354018_SNP [dm3] 3L_22360918_SNP [dm6]	G	A	2.660e^-5	0.601	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11949031	3L_11949031_SNP [dm3] 3L_11955931_SNP [dm6]	T	C	2.671e^-5	0.601	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	11949102	3L_11949102_SNP [dm3] 3L_11956002_SNP [dm6]	C	T	2.671e^-5	0.601	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2L	4004599	2L_4004599_SNP [dm3] 2L_4004599_SNP [dm6]	G	A	2.703e^-5	0.601	UPSTREAM CG15422 DOWNSTREAM CG34176 INTERGENIC
X	17374412	X_17374412_SNP [dm3] X_17480379_SNP [dm6]	A	C	2.704e^-5	0.601	INTRON CG43658
X	11566012	X_11566012_DEL [dm3] X_11671979_DEL [dm6]	CTAATTATCCAAC...	C	2.708e^-5	0.601	INTRON Ptp10D
2R	17616847	2R_17616847_SNP [dm3] 2R_21729342_SNP [dm6]	A	C	2.734e^-5	0.601	INTERGENIC	TF binding site mE1_TFBS_cad
X	11565911	X_11565911_DEL [dm3] X_11671878_DEL [dm6]	ATAAA	A	2.770e^-5	0.601	INTRON Ptp10D	TF binding site mE1_TFBS_cad
2R	16451648	2R_16451648_SNP [dm3] 2R_20564143_SNP [dm6]	A	G	2.791e^-5	0.601	SYNONYMOUS_CODING qsm
3L	22370186	3L_22370186_SNP [dm3] 3L_22377086_SNP [dm6]	C	T	2.795e^-5	0.601	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22384904	3L_22384904_SNP [dm3] 3L_22391804_SNP [dm6]	A	C	2.803e^-5	0.601	INTRON Ten-m
2L	7187631	2L_7187631_SNP [dm3] 2L_7187631_SNP [dm6]	C	T	2.852e^-5	0.601	SYNONYMOUS_CODING CG4496
3L	1994139	3L_1994139_SNP [dm3] 3L_1994139_SNP [dm6]	G	C	2.919e^-5	0.601	INTERGENIC
3R	19066475	3R_19066475_SNP [dm3] 3R_23240753_SNP [dm6]	G	A	2.954e^-5	0.601	UPSTREAM CG4467 INTRON CG4467
3R	26891054	3R_26891054_SNP [dm3] 3R_31065332_SNP [dm6]	C	A	2.954e^-5	0.601	UTR_5_PRIME Sox100B	TF binding site mE1_TFBS_HSA
X	7439736	X_7439736_SNP [dm3] X_7545703_SNP [dm6]	C	T	2.983e^-5	0.601	INTRON CG32719
X	19074008	X_19074008_SNP [dm3] X_19179975_SNP [dm6]	A	C	2.994e^-5	0.601	UPSTREAM CG7453 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19378459	3R_19378459_SNP [dm3] 3R_23552737_SNP [dm6]	G	A	3.004e^-5	0.601	INTERGENIC
2L	15787710	2L_15787710_SNP [dm3] 2L_15787710_SNP [dm6]	C	T	3.005e^-5	0.601	SYNONYMOUS_CODING CG18109
3R	25166509	3R_25166509_SNP [dm3] 3R_29340787_SNP [dm6]	G	A	3.077e^-5	0.601	INTERGENIC
2L	18820390	2L_18820390_SNP [dm3] 2L_18820390_SNP [dm6]	G	A	3.081e^-5	0.601	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3L	17982949	3L_17982949_SNP [dm3] 3L_17989849_SNP [dm6]	G	T	3.082e^-5	0.601	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18785486	2L_18785486_SNP [dm3] 2L_18785486_SNP [dm6]	T	A	3.098e^-5	0.601	INTRON ham
3R	20031137	3R_20031137_SNP [dm3] 3R_24205415_SNP [dm6]	C	G	3.132e^-5	0.601	INTRON twin
3R	14663621	3R_14663621_SNP [dm3] 3R_18837899_SNP [dm6]	A	G	3.147e^-5	0.601	INTRON CG18208
3R	26687028	3R_26687028_SNP [dm3] 3R_30861306_SNP [dm6]	C	T	3.152e^-5	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5064879	3L_5064879_SNP [dm3] 3L_5064879_SNP [dm6]	T	G	3.170e^-5	0.601	INTRON Con
3R	14040169	3R_14040169_SNP [dm3] 3R_18214447_SNP [dm6]	C	A	3.298e^-5	0.611	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17889427	3R_17889427_SNP [dm3] 3R_22063705_SNP [dm6]	C	A	3.341e^-5	0.611	INTRON how
3L	9306385	3L_9306385_SNP [dm3] 3L_9313285_SNP [dm6]	A	G	3.363e^-5	0.611	INTERGENIC
3R	14402344	3R_14402344_SNP [dm3] 3R_18576622_SNP [dm6]	T	C	3.374e^-5	0.611	INTRON CG7694 & 1 other
2R	11494203	2R_11494203_SNP [dm3] 2R_15606698_SNP [dm6]	G	A	3.389e^-5	0.611	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22369439	3L_22369439_SNP [dm3] 3L_22376339_SNP [dm6]	A	C	3.442e^-5	0.615	INTRON Ten-m	TF binding site mE1_TFBS_inv
2L	16493387	2L_16493387_SNP [dm3] 2L_16493387_SNP [dm6]	T	C	3.544e^-5	0.627	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	22617465	2L_22617465_SNP [dm3] 2L_22724733_SNP [dm6]	A	C	3.620e^-5	0.634	INTRON CG40006
3L	10542142	3L_10542142_SNP [dm3] 3L_10549042_SNP [dm6]	T	C	3.758e^-5	0.653	INTRON A2bp1
3R	25095102	3R_25095102_SNP [dm3] 3R_29269380_SNP [dm6]	C	A	3.831e^-5	0.654	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22370162	3L_22370162_SNP [dm3] 3L_22377062_SNP [dm6]	A	T	3.838e^-5	0.654	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9386436	2R_9386436_SNP [dm3] 2R_13498931_SNP [dm6]	T	C	3.912e^-5	0.661	INTRON drk
X	6933324	X_6933324_SNP [dm3] X_7039291_SNP [dm6]	C	G	3.993e^-5	0.663	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	22402957	3L_22402957_SNP [dm3] 3L_22409857_SNP [dm6]	A	G	3.998e^-5	0.663	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9308792	2R_9308792_SNP [dm3] 2R_13421287_SNP [dm6]	A	G	4.191e^-5	0.673	SYNONYMOUS_CODING CG42321
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	4.210e^-5	0.673	INTRON pHCl
2R	18376926	2R_18376926_SNP [dm3] 2R_22489421_SNP [dm6]	T	C	4.226e^-5	0.673	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	4.378e^-5	0.673	INTERGENIC
3R	21708575	3R_21708575_SNP [dm3] 3R_25882853_SNP [dm6]	A	T	4.445e^-5	0.673	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3R	21708584	3R_21708584_SNP [dm3] 3R_25882862_SNP [dm6]	A	T	4.445e^-5	0.673	INTRON SppL	TF binding site BDTNP1_TFBS_dl
2L	3395891	2L_3395891_SNP [dm3] 2L_3395891_SNP [dm6]	C	T	4.551e^-5	0.673	INTERGENIC
2R	9403019	2R_9403019_SNP [dm3] 2R_13515514_SNP [dm6]	C	T	4.583e^-5	0.673	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad
3L	14361405	3L_14361405_INS [dm3] 3L_14368305_INS [dm6]	A	ACA	4.611e^-5	0.673	UTR_3_PRIME fz DOWNSTREAM CG13481
3L	11955122	3L_11955122_SNP [dm3] 3L_11962022_SNP [dm6]	A	G	4.633e^-5	0.673	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3R	21708517	3R_21708517_SNP [dm3] 3R_25882795_SNP [dm6]	T	A	4.691e^-5	0.673	INTRON SppL
2R	12792814	2R_12792814_SNP [dm3] 2R_16905309_SNP [dm6]	A	G	4.695e^-5	0.673	INTERGENIC
3R	21708536	3R_21708536_SNP [dm3] 3R_25882814_SNP [dm6]	A	G	4.713e^-5	0.673	INTRON SppL
3R	5473215	3R_5473215_SNP [dm3] 3R_9647493_SNP [dm6]	T	C	4.826e^-5	0.673	INTRON Dh44
3L	22384891	3L_22384891_SNP [dm3] 3L_22391791_SNP [dm6]	C	G	4.843e^-5	0.673	INTRON Ten-m
3L	5064906	3L_5064906_SNP [dm3] 3L_5064906_SNP [dm6]	T	A	4.883e^-5	0.673	INTRON Con
3R	19066370	3R_19066370_SNP [dm3] 3R_23240648_SNP [dm6]	A	G	4.887e^-5	0.673	UPSTREAM CG4467 INTRON CG4467
X	4786089	X_4786089_SNP [dm3] X_4892056_SNP [dm6]	G	A	4.896e^-5	0.673	INTRON CG42594
3L	1735707	3L_1735707_SNP [dm3] 3L_1735707_SNP [dm6]	C	T	4.900e^-5	0.673	UTR_5_PRIME Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3R	8659131	3R_8659131_SNP [dm3] 3R_12833409_SNP [dm6]	G	A	4.902e^-5	0.673	INTERGENIC
X	4786132	X_4786132_SNP [dm3] X_4892099_SNP [dm6]	A	T	4.917e^-5	0.673	INTRON CG42594
3R	15245883	3R_15245883_DEL [dm3] 3R_19420161_DEL [dm6]	CTGATACACATCATAGCCGA...	C	4.975e^-5	0.673	INTRON CG31221
3R	25095042	3R_25095042_SNP [dm3] 3R_29269320_SNP [dm6]	T	G	4.990e^-5	0.673	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22407025	3L_22407025_DEL [dm3] 3L_22413925_DEL [dm6]	CCACATCAGAAAGCGGAGCG...	C	5.023e^-5	0.673	INTERGENIC
3R	16129132	3R_16129132_SNP [dm3] 3R_20303410_SNP [dm6]	G	A	5.071e^-5	0.673	UTR_3_PRIME cic DOWNSTREAM CG4367
2L	8246539	2L_8246539_SNP [dm3] 2L_8246539_SNP [dm6]	G	T	5.110e^-5	0.673	INTRON CG8086
X	7535659	X_7535659_SNP [dm3] X_7641626_SNP [dm6]	G	A	5.200e^-5	0.673	INTRON ct
2L	19156600	2L_19156600_SNP [dm3] 2L_19156600_SNP [dm6]	T	A	5.248e^-5	0.673	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15119201	3R_15119201_INS [dm3] 3R_19293479_INS [dm6]	A	ACTGTTAAGT	5.259e^-5	0.673	INTERGENIC
X	17891135	X_17891135_SNP [dm3] X_17997102_SNP [dm6]	G	A	5.331e^-5	0.673	INTRON Sh
3R	16129108	3R_16129108_SNP [dm3] 3R_20303386_SNP [dm6]	G	A	5.364e^-5	0.673	UTR_3_PRIME cic DOWNSTREAM CG4367
2R	10954368	2R_10954368_SNP [dm3] 2R_15066863_SNP [dm6]	A	G	5.429e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_cad
X	16940341	X_16940341_SNP [dm3] X_17046308_SNP [dm6]	C	T	5.476e^-5	0.673	INTRON CG45002
2L	3176619	2L_3176619_SNP [dm3] 2L_3176619_SNP [dm6]	C	T	5.480e^-5	0.673	INTRON CG34393
X	16940342	X_16940342_SNP [dm3] X_17046309_SNP [dm6]	G	A	5.494e^-5	0.673	INTRON CG45002
2R	1065087	2R_1065087_SNP [dm3] 2R_5177582_SNP [dm6]	C	G	5.512e^-5	0.673	DOWNSTREAM Nipped-A INTERGENIC
3R	14647451	3R_14647451_SNP [dm3] 3R_18821729_SNP [dm6]	T	C	5.512e^-5	0.673	INTRON CG18208
3R	19066328	3R_19066328_DEL [dm3] 3R_23240606_DEL [dm6]	CCTC	C	5.574e^-5	0.673	UPSTREAM CG4467 INTRON CG4467
2R	9409193	2R_9409193_SNP [dm3] 2R_13521688_SNP [dm6]	T	C	5.709e^-5	0.673	UPSTREAM CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
2R	16420562	2R_16420562_SNP [dm3] 2R_20533057_SNP [dm6]	C	T	5.716e^-5	0.673	UPSTREAM CG30154 DOWNSTREAM CR44651 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21708537	3R_21708537_SNP [dm3] 3R_25882815_SNP [dm6]	A	T	5.731e^-5	0.673	INTRON SppL
X	21188907	X_21188907_SNP [dm3] X_21317880_SNP [dm6]	T	A	5.775e^-5	0.673	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_jumu
3L	15802234	3L_15802234_SNP [dm3] 3L_15809134_SNP [dm6]	G	T	5.834e^-5	0.673	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
3R	14445300	3R_14445300_DEL [dm3] 3R_18619578_DEL [dm6]	TCTCGCT	T	5.842e^-5	0.673	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
2R	8443057	2R_8443057_SNP [dm3] 2R_12555552_SNP [dm6]	T	A	5.881e^-5	0.673	INTRON fra
X	21186502	X_21186502_SNP [dm3] X_21315475_SNP [dm6]	G	T	6.090e^-5	0.673	UPSTREAM Rpt6 INTRON CG1801	transposable element FlyBase
X	21182789	X_21182789_SNP [dm3] X_21311762_SNP [dm6]	T	A	6.119e^-5	0.673	INTRON CG1801
3L	1996351	3L_1996351_SNP [dm3] 3L_1996351_SNP [dm6]	T	A	6.152e^-5	0.673	INTERGENIC
2L	11029000	2L_11029000_SNP [dm3] 2L_11029000_SNP [dm6]	C	T	6.177e^-5	0.673	NON_SYNONYMOUS_CODING Samuel UTR_3_PRIME Samuel	TF binding site mE1_TFBS_cad
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	6.341e^-5	0.673	INTRON qsm
3L	14476249	3L_14476249_SNP [dm3] 3L_14483149_SNP [dm6]	T	A	6.470e^-5	0.673	INTRON bbg
2R	19271798	2R_19271798_SNP [dm3] 2R_23384275_SNP [dm6]	C	T	6.500e^-5	0.673	NON_SYNONYMOUS_CODING CG30414 UPSTREAM CG13551 DOWNSTREAM CR44784	TF binding site mE1_TFBS_chinmo
2L	9600368	2L_9600368_SNP [dm3] 2L_9600368_SNP [dm6]	A	G	6.502e^-5	0.673	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18580815	2L_18580815_SNP [dm3] 2L_18580815_SNP [dm6]	A	G	6.527e^-5	0.673	INTRON Pde11
2R	17114077	2R_17114077_SNP [dm3] 2R_21226572_SNP [dm6]	A	G	6.532e^-5	0.673	INTRON ASPP
3R	17985032	3R_17985032_SNP [dm3] 3R_22159310_SNP [dm6]	T	C	6.535e^-5	0.673	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	25095017	3R_25095017_SNP [dm3] 3R_29269295_SNP [dm6]	A	G	6.612e^-5	0.673	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8440284	2R_8440284_SNP [dm3] 2R_12552779_SNP [dm6]	A	T	6.617e^-5	0.673	INTRON fra
2L	2852715	2L_2852715_SNP [dm3] 2L_2852715_SNP [dm6]	G	A	6.724e^-5	0.673	INTRON CG3104
3L	11922610	3L_11922610_SNP [dm3] 3L_11929510_SNP [dm6]	T	C	6.748e^-5	0.673	INTRON CG44837 & 1 other
3R	18666342	3R_18666342_SNP [dm3] 3R_22840620_SNP [dm6]	A	T	6.758e^-5	0.673	INTERGENIC
3L	18343150	3L_18343150_SNP [dm3] 3L_18350050_SNP [dm6]	A	T	6.773e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18820407	2L_18820407_SNP [dm3] 2L_18820407_SNP [dm6]	A	G	6.811e^-5	0.673	NON_SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3L	12928122	3L_12928122_SNP [dm3] 3L_12935022_SNP [dm6]	G	C	6.873e^-5	0.673	INTERGENIC
X	21188804	X_21188804_DEL [dm3] X_21317777_DEL [dm6]	ATCAGATTA	A	6.886e^-5	0.673	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
2L	20631117	2L_20631117_SNP [dm3] 2L_20631117_SNP [dm6]	C	T	6.892e^-5	0.673	INTERGENIC
3L	14342015	3L_14342015_SNP [dm3] 3L_14348915_SNP [dm6]	T	A	6.903e^-5	0.673	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22384903	3L_22384903_SNP [dm3] 3L_22391803_SNP [dm6]	T	A	6.914e^-5	0.673	INTRON Ten-m
3L	5221713	3L_5221713_SNP [dm3] 3L_5228613_SNP [dm6]	T	C	6.997e^-5	0.673	INTRON shep
2L	8240137	2L_8240137_SNP [dm3] 2L_8240137_SNP [dm6]	A	G	7.007e^-5	0.673	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14191329	2R_14191329_SNP [dm3] 2R_18303824_SNP [dm6]	A	C	7.020e^-5	0.673	SYNONYMOUS_CODING CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	22367650	3L_22367650_SNP [dm3] 3L_22374550_SNP [dm6]	T	C	7.023e^-5	0.673	INTRON Ten-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25260091	3R_25260091_SNP [dm3] 3R_29434369_SNP [dm6]	A	T	7.094e^-5	0.673	INTRON Ptp99A
X	11566031	X_11566031_SNP [dm3] X_11671998_SNP [dm6]	G	C	7.119e^-5	0.673	INTRON Ptp10D
X	20460967	X_20460967_SNP [dm3] X_20589940_SNP [dm6]	C	G	7.165e^-5	0.673	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	11921299	3L_11921299_SNP [dm3] 3L_11928199_SNP [dm6]	A	T	7.171e^-5	0.673	INTRON CG44837 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26686962	3R_26686962_SNP [dm3] 3R_30861240_SNP [dm6]	G	A	7.171e^-5	0.673	INTERGENIC
2L	7849716	2L_7849716_SNP [dm3] 2L_7849716_SNP [dm6]	G	T	7.293e^-5	0.673	INTRON CG14535
X	2243135	X_2243135_SNP [dm3] X_2349102_SNP [dm6]	A	G	7.325e^-5	0.673	SYNONYMOUS_CODING ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26216644	3R_26216644_DEL [dm3] 3R_30390922_DEL [dm6]	GTTG	G	7.422e^-5	0.673	DOWNSTREAM Fer2LCH INTERGENIC
2R	10544441	2R_10544441_SNP [dm3] 2R_14656936_SNP [dm6]	C	T	7.460e^-5	0.673	SYNONYMOUS_CODING Adgf-E
3R	17985036	3R_17985036_SNP [dm3] 3R_22159314_SNP [dm6]	G	T	7.466e^-5	0.673	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	14343502	3L_14343502_SNP [dm3] 3L_14350402_SNP [dm6]	A	G	7.525e^-5	0.673	INTRON fz
2R	17995058	2R_17995058_DEL [dm3] 2R_22107553_DEL [dm6]	CTT	C	7.548e^-5	0.673	DOWNSTREAM Vrp1 INTRON Vrp1
3L	17093022	3L_17093022_SNP [dm3] 3L_17099922_SNP [dm6]	G	C	7.557e^-5	0.673	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	12866005	X_12866005_SNP [dm3] X_12971972_SNP [dm6]	C	T	7.595e^-5	0.673	SYNONYMOUS_CODING CG15721 INTRON CR43636
3R	21736008	3R_21736008_SNP [dm3] 3R_25910286_SNP [dm6]	A	T	7.643e^-5	0.673	INTRON CG42235
3L	15642686	3L_15642686_SNP [dm3] 3L_15649586_SNP [dm6]	G	T	7.703e^-5	0.673	SYNONYMOUS_CODING Eig71Ea UPSTREAM Eig71Eb DOWNSTREAM CG43083
X	21185604	X_21185604_SNP [dm3] X_21314577_SNP [dm6]	A	G	7.762e^-5	0.673	SYNONYMOUS_CODING CG1801
3R	9759805	3R_9759805_SNP [dm3] 3R_13934083_SNP [dm6]	C	T	7.798e^-5	0.673	INTERGENIC
3L	14343568	3L_14343568_SNP [dm3] 3L_14350468_SNP [dm6]	A	T	7.832e^-5	0.673	INTRON fz
3R	9407392	3R_9407392_SNP [dm3] 3R_13581670_SNP [dm6]	G	C	7.929e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9600353	2L_9600353_SNP [dm3] 2L_9600353_SNP [dm6]	A	G	7.944e^-5	0.673	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16680382	2R_16680382_SNP [dm3] 2R_20792877_SNP [dm6]	A	G	7.954e^-5	0.673	UPSTREAM CG15225 & 1 other INTERGENIC
3R	21752121	3R_21752121_SNP [dm3] 3R_25926399_SNP [dm6]	T	C	7.989e^-5	0.673	INTRON CCAP-R
X	2487647	X_2487647_SNP [dm3] X_2593614_SNP [dm6]	A	G	8.030e^-5	0.673	UTR_5_PRIME egh INTRON egh
3L	11949247	3L_11949247_SNP [dm3] 3L_11956147_SNP [dm6]	A	C	8.043e^-5	0.673	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3R	19249339	3R_19249339_SNP [dm3] 3R_23423617_SNP [dm6]	G	A	8.057e^-5	0.673	INTRON CG4374
3L	17403615	3L_17403615_DEL [dm3] 3L_17410515_DEL [dm6]	AA	A	8.084e^-5	0.673	INTRON blot
2L	8325619	2L_8325619_SNP [dm3] 2L_8325619_SNP [dm6]	T	C	8.135e^-5	0.673	UPSTREAM CG7781 INTERGENIC
3L	1996345	3L_1996345_SNP [dm3] 3L_1996345_SNP [dm6]	C	T	8.166e^-5	0.673	INTERGENIC
2L	7849694	2L_7849694_SNP [dm3] 2L_7849694_SNP [dm6]	C	T	8.182e^-5	0.673	INTRON CG14535
3L	11927648	3L_11927648_SNP [dm3] 3L_11934548_SNP [dm6]	T	C	8.207e^-5	0.673	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7181407	2L_7181407_SNP [dm3] 2L_7181407_SNP [dm6]	C	T	8.212e^-5	0.673	UPSTREAM CG4495 INTERGENIC
2L	18716656	2L_18716656_SNP [dm3] 2L_18716656_SNP [dm6]	A	G	8.217e^-5	0.673	START_GAINED CG10348 UTR_5_PRIME CG10348	TF binding site mE1_TFBS_cad
3L	22427232	3L_22427232_INS [dm3] 3L_22434132_INS [dm6]	G	GGTAG	8.251e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	14407012	2R_14407012_SNP [dm3] 2R_18519507_SNP [dm6]	A	G	8.379e^-5	0.673	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27277871	3R_27277871_SNP [dm3] 3R_31452149_SNP [dm6]	A	G	8.431e^-5	0.673	INTRON Gprk2	TF binding site mE1_TFBS_cad
X	3368299	X_3368299_MNP [dm3] X_3474266_MNP [dm6]	TCG	ATT	8.453e^-5	0.673	UTR_5_PRIME CG12206 UPSTREAM CG12206 INTRON CR44999 & 1 other
3R	8660842	3R_8660842_SNP [dm3] 3R_12835120_SNP [dm6]	A	T	8.460e^-5	0.673	INTERGENIC
3L	1996943	3L_1996943_SNP [dm3] 3L_1996943_SNP [dm6]	C	T	8.461e^-5	0.673	INTERGENIC
2R	13394169	2R_13394169_SNP [dm3] 2R_17506664_SNP [dm6]	T	C	8.471e^-5	0.673	UTR_3_PRIME CG43164 INTRON CG43164
2R	15430623	2R_15430623_SNP [dm3] 2R_19543118_SNP [dm6]	T	G	8.473e^-5	0.673	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	8240145	2L_8240145_SNP [dm3] 2L_8240145_SNP [dm6]	C	T	8.503e^-5	0.673	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17889366	3R_17889366_SNP [dm3] 3R_22063644_SNP [dm6]	T	G	8.567e^-5	0.673	INTRON how
3R	9746501	3R_9746501_DEL [dm3] 3R_13920779_DEL [dm6]	TCCTTTGACATAT...	T	8.617e^-5	0.673	INTERGENIC
3R	18856814	3R_18856814_SNP [dm3] 3R_23031092_SNP [dm6]	A	C	8.651e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14156396	3L_14156396_SNP [dm3] 3L_14163296_SNP [dm6]	A	T	8.668e^-5	0.673	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	26216686	3R_26216686_DEL [dm3] 3R_30390964_DEL [dm6]	TT	T	8.720e^-5	0.673	DOWNSTREAM Fer2LCH INTERGENIC
3R	18767362	3R_18767362_SNP [dm3] 3R_22941640_SNP [dm6]	C	A	8.737e^-5	0.673	INTRON klg
2R	13227110	2R_13227110_SNP [dm3] 2R_17339605_SNP [dm6]	G	T	8.749e^-5	0.673	INTRON mbl
2R	9694917	2R_9694917_SNP [dm3] 2R_13807412_SNP [dm6]	A	G	8.774e^-5	0.673	INTRON stj
3L	13341327	3L_13341327_SNP [dm3] 3L_13348227_SNP [dm6]	A	C	8.786e^-5	0.673	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11917276	3L_11917276_SNP [dm3] 3L_11924176_SNP [dm6]	T	C	8.792e^-5	0.673	SYNONYMOUS_CODING CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	6112536	X_6112536_SNP [dm3] X_6218503_SNP [dm6]	C	T	8.810e^-5	0.673	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21743432	3R_21743432_SNP [dm3] 3R_25917710_SNP [dm6]	A	C	8.812e^-5	0.673	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
X	4786069	X_4786069_DEL [dm3] X_4892036_DEL [dm6]	TGCACAGCTTCTCAGC...	AT	8.825e^-5	0.673	INTRON CG42594
3L	1462049	3L_1462049_SNP [dm3] 3L_1462049_SNP [dm6]	G	A	8.864e^-5	0.673	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17985020	3R_17985020_SNP [dm3] 3R_22159298_SNP [dm6]	T	C	8.887e^-5	0.673	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	8865000	2R_8865000_SNP [dm3] 2R_12977495_SNP [dm6]	C	A	8.930e^-5	0.673	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7849696	2L_7849696_SNP [dm3] 2L_7849696_SNP [dm6]	T	G	9.008e^-5	0.673	INTRON CG14535
3L	12207704	3L_12207704_SNP [dm3] 3L_12214604_SNP [dm6]	A	G	9.039e^-5	0.673	UPSTREAM app INTRON app
2L	7088033	2L_7088033_SNP [dm3] 2L_7088033_SNP [dm6]	C	T	9.043e^-5	0.673	INTERGENIC
2R	1060267	2R_1060267_SNP [dm3] 2R_5172762_SNP [dm6]	T	A	9.084e^-5	0.673	INTERGENIC	transposable element FlyBase
3R	25552523	3R_25552523_SNP [dm3] 3R_29726801_SNP [dm6]	C	A	9.142e^-5	0.673	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18415857	X_18415857_SNP [dm3] X_18521824_SNP [dm6]	C	T	9.217e^-5	0.673	NON_SYNONYMOUS_CODING CG6481 INTRON Bx	TF binding site mE1_TFBS_sens
2R	9352516	2R_9352516_SNP [dm3] 2R_13465011_SNP [dm6]	G	T	9.256e^-5	0.673	INTRON arr	TF binding site mE1_TFBS_inv
2R	15241290	2R_15241290_SNP [dm3] 2R_19353785_SNP [dm6]	A	G	9.260e^-5	0.673	INTRON Rgk1
3R	12031504	3R_12031504_SNP [dm3] 3R_16205782_SNP [dm6]	T	C	9.264e^-5	0.673	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21746610	3R_21746610_SNP [dm3] 3R_25920888_SNP [dm6]	C	T	9.376e^-5	0.673	UTR_3_PRIME CG42235 DOWNSTREAM CG14546
2L	18821569	2L_18821569_SNP [dm3] 2L_18821569_SNP [dm6]	C	A	9.391e^-5	0.673	INTRON CG17324
3R	18523304	3R_18523304_SNP [dm3] 3R_22697582_SNP [dm6]	A	T	9.445e^-5	0.673	SPLICE_SITE_REGION cd UPSTREAM Cyp6d4 INTRON cd
2L	8889236	2L_8889236_DEL [dm3] 2L_8889236_DEL [dm6]	GATCTCGTATTATACC...	G	9.480e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3R	25552909	3R_25552909_SNP [dm3] 3R_29727187_SNP [dm6]	T	G	9.601e^-5	0.673	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	16307464	3R_16307464_SNP [dm3] 3R_20481742_SNP [dm6]	T	C	9.602e^-5	0.673	INTRON Gfrl
X	20291801	X_20291801_SNP [dm3] X_20420774_SNP [dm6]	T	C	9.614e^-5	0.673	DOWNSTREAM Pp4-19C INTRON Obp19d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22221992	X_22221992_SNP [dm3] X_22820156_SNP [dm6]	C	T	9.667e^-5	0.673	INTERGENIC
3L	13429258	3L_13429258_INS [dm3] 3L_13436158_INS [dm6]	A	ACCAAAGTACAAAA...	9.670e^-5	0.673	UPSTREAM CG10713 INTRON CG10154
X	20436419	X_20436419_SNP [dm3] X_20565392_SNP [dm6]	C	G	9.705e^-5	0.673	SYNONYMOUS_CODING RunxB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1852008	2L_1852008_SNP [dm3] 2L_1852008_SNP [dm6]	A	T	9.716e^-5	0.673	INTRON wry
2R	15251652	2R_15251652_SNP [dm3] 2R_19364147_SNP [dm6]	C	T	9.720e^-5	0.673	INTRON CG10051	TF binding site mE1_TFBS_cad
3R	16498262	3R_16498262_SNP [dm3] 3R_20672540_SNP [dm6]	C	T	9.740e^-5	0.673	UTR_3_PRIME Cpr92F
3R	26029300	3R_26029300_SNP [dm3] 3R_30203578_SNP [dm6]	A	G	9.755e^-5	0.673	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26707324	3R_26707324_SNP [dm3] 3R_30881602_SNP [dm6]	G	A	9.776e^-5	0.673	UPSTREAM CG12071 DOWNSTREAM CG15547 INTERGENIC
3R	21746837	3R_21746837_SNP [dm3] 3R_25921115_SNP [dm6]	A	T	9.795e^-5	0.673	UTR_3_PRIME CG14546 DOWNSTREAM CG42235
2R	15897440	2R_15897440_SNP [dm3] 2R_20009935_SNP [dm6]	A	G	9.811e^-5	0.673	INTERGENIC
2L	8247550	2L_8247550_SNP [dm3] 2L_8247550_SNP [dm6]	G	A	9.812e^-5	0.673	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	19046003	X_19046003_SNP [dm3] X_19151970_SNP [dm6]	A	G	9.875e^-5	0.673	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
3R	26216682	3R_26216682_SNP [dm3] 3R_30390960_SNP [dm6]	C	G	9.930e^-5	0.673	DOWNSTREAM Fer2LCH INTERGENIC
3R	25095068	3R_25095068_SNP [dm3] 3R_29269346_SNP [dm6]	G	C	9.993e^-5	0.673	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14446847	3R_14446847_SNP [dm3] 3R_18621125_SNP [dm6]	T	A	1.003e^-4	0.673	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14343501	3L_14343501_SNP [dm3] 3L_14350401_SNP [dm6]	G	T	1.018e^-4	0.673	INTRON fz
3L	12177686	3L_12177686_SNP [dm3] 3L_12184586_SNP [dm6]	G	T	1.022e^-4	0.673	UPSTREAM CG6910 INTERGENIC
3L	22459728	3L_22459728_SNP [dm3] 3L_22466628_SNP [dm6]	A	T	1.024e^-4	0.673	UTR_5_PRIME CG11438 UPSTREAM CG11438	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11599602	2R_11599602_SNP [dm3] 2R_15712097_SNP [dm6]	T	C	1.028e^-4	0.673	INTRON CG30083
3R	18084312	3R_18084312_SNP [dm3] 3R_22258590_SNP [dm6]	A	T	1.030e^-4	0.673	INTRON SKIP
3L	7430629	3L_7430629_SNP [dm3] 3L_7437529_SNP [dm6]	C	T	1.035e^-4	0.673	UPSTREAM CG14835 DOWNSTREAM sphinx1 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5380557	X_5380557_SNP [dm3] X_5486524_SNP [dm6]	T	C	1.037e^-4	0.673	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18008981	3L_18008981_SNP [dm3] 3L_18015881_SNP [dm6]	A	G	1.045e^-4	0.673	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19027446	3L_19027446_SNP [dm3] 3L_19034346_SNP [dm6]	T	A	1.048e^-4	0.673	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16883785	3L_16883785_SNP [dm3] 3L_16890685_SNP [dm6]	T	C	1.048e^-4	0.673	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10320407	2L_10320407_SNP [dm3] 2L_10320407_SNP [dm6]	A	G	1.052e^-4	0.673	INTRON CG5381
3L	14343578	3L_14343578_SNP [dm3] 3L_14350478_SNP [dm6]	C	T	1.052e^-4	0.673	INTRON fz
3L	22456658	3L_22456658_SNP [dm3] 3L_22463558_SNP [dm6]	C	A	1.053e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15802220	3L_15802220_DEL [dm3] 3L_15809120_DEL [dm6]	TA	T	1.062e^-4	0.673	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2L	4408010	2L_4408010_SNP [dm3] 2L_4408010_SNP [dm6]	G	T	1.063e^-4	0.673	SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17985048	3L_17985048_SNP [dm3] 3L_17991948_SNP [dm6]	T	G	1.067e^-4	0.673	INTRON Eip75B
3R	14677764	3R_14677764_INS [dm3] 3R_18852042_INS [dm6]	GGCC	AATAT	1.072e^-4	0.673	UPSTREAM CR45633 & 1 other INTERGENIC
3R	18371371	3R_18371371_SNP [dm3] 3R_22545649_SNP [dm6]	A	G	1.075e^-4	0.673	INTRON AdipoR
X	11566053	X_11566053_SNP [dm3] X_11672020_SNP [dm6]	T	A	1.086e^-4	0.673	INTRON Ptp10D
2L	7975282	2L_7975282_SNP [dm3] 2L_7975282_SNP [dm6]	C	G	1.087e^-4	0.673	SYNONYMOUS_CODING Snoo
3R	18856825	3R_18856825_SNP [dm3] 3R_23031103_SNP [dm6]	C	A	1.087e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14407004	2R_14407004_SNP [dm3] 2R_18519499_SNP [dm6]	C	A	1.092e^-4	0.673	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1000131	2R_1000131_SNP [dm3] 2R_5112626_SNP [dm6]	A	T	1.094e^-4	0.673	INTERGENIC	transposable element FlyBase
3L	17982951	3L_17982951_SNP [dm3] 3L_17989851_SNP [dm6]	T	G	1.102e^-4	0.673	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4003710	X_4003710_DEL [dm3] X_4109677_DEL [dm6]	TTA	T	1.104e^-4	0.673	INTRON cib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	18822439	3L_18822439_SNP [dm3] 3L_18829339_SNP [dm6]	T	C	1.109e^-4	0.673	NON_SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3L	16085272	3L_16085272_SNP [dm3] 3L_16092172_SNP [dm6]	C	A	1.113e^-4	0.673	INTRON ClC-c
2L	11511516	2L_11511516_SNP [dm3] 2L_11511516_SNP [dm6]	C	T	1.118e^-4	0.673	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_cad
X	18845713	X_18845713_SNP [dm3] X_18951680_SNP [dm6]	G	A	1.132e^-4	0.673	INTRON CG43759
3R	16717119	3R_16717119_SNP [dm3] 3R_20891397_SNP [dm6]	G	T	1.137e^-4	0.673	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15392820	3L_15392820_SNP [dm3] 3L_15399720_SNP [dm6]	C	T	1.139e^-4	0.673	INTERGENIC
3R	24661972	3R_24661972_SNP [dm3] 3R_28836250_SNP [dm6]	G	A	1.141e^-4	0.673	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15251785	2R_15251785_SNP [dm3] 2R_19364280_SNP [dm6]	T	C	1.143e^-4	0.673	INTRON CG10051	TF binding site mE1_TFBS_cad
2R	17985054	2R_17985054_SNP [dm3] 2R_22097549_SNP [dm6]	A	G	1.145e^-4	0.673	INTRON CG11073	TF binding site mE1_TFBS_HSA
3R	16858968	3R_16858968_SNP [dm3] 3R_21033246_SNP [dm6]	A	G	1.149e^-4	0.673	SYNONYMOUS_CODING Dhc93AB
X	11269828	X_11269828_SNP [dm3] X_11375795_SNP [dm6]	G	A	1.150e^-4	0.673	UTR_5_PRIME dlg1 INTRON dlg1
3R	18523202	3R_18523202_SNP [dm3] 3R_22697480_SNP [dm6]	T	C	1.157e^-4	0.673	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	18523219	3R_18523219_SNP [dm3] 3R_22697497_SNP [dm6]	T	G	1.157e^-4	0.673	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
3R	16716917	3R_16716917_SNP [dm3] 3R_20891195_SNP [dm6]	G	T	1.163e^-4	0.673	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	12031495	3R_12031495_DEL [dm3] 3R_16205773_DEL [dm6]	AA	A	1.164e^-4	0.673	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15802235	3L_15802235_SNP [dm3] 3L_15809135_SNP [dm6]	T	C	1.166e^-4	0.673	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
3L	18630107	3L_18630107_SNP [dm3] 3L_18637007_SNP [dm6]	G	A	1.168e^-4	0.673	INTRON MYPT-75D
3R	7772471	3R_7772471_SNP [dm3] 3R_11946749_SNP [dm6]	G	A	1.170e^-4	0.673	INTRON Cad87A
3R	12031436	3R_12031436_SNP [dm3] 3R_16205714_SNP [dm6]	A	G	1.171e^-4	0.673	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19249216	3R_19249216_SNP [dm3] 3R_23423494_SNP [dm6]	C	G	1.173e^-4	0.673	INTRON CG4374	TF binding site mE1_TFBS_HSA
3L	15642642	3L_15642642_SNP [dm3] 3L_15649542_SNP [dm6]	A	G	1.175e^-4	0.673	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
2L	5859736	2L_5859736_SNP [dm3] 2L_5859736_SNP [dm6]	C	A	1.179e^-4	0.673	DOWNSTREAM rau INTERGENIC
3R	25552536	3R_25552536_SNP [dm3] 3R_29726814_SNP [dm6]	G	A	1.192e^-4	0.673	SPLICE_SITE_ACCEPTOR Kul INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12547425	3L_12547425_SNP [dm3] 3L_12554325_SNP [dm6]	C	A	1.192e^-4	0.673	INTRON sowah
2R	16575271	2R_16575271_SNP [dm3] 2R_20687766_SNP [dm6]	G	C	1.196e^-4	0.673	UPSTREAM Gr57a INTERGENIC
2L	9086201	2L_9086201_SNP [dm3] 2L_9086201_SNP [dm6]	A	T	1.198e^-4	0.673	INTRON Toll-4
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	1.199e^-4	0.673	INTERGENIC
3L	15802242	3L_15802242_SNP [dm3] 3L_15809142_SNP [dm6]	G	T	1.202e^-4	0.673	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2R	15194859	2R_15194859_SNP [dm3] 2R_19307354_SNP [dm6]	C	A	1.206e^-4	0.673	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
3L	8615278	3L_8615278_SNP [dm3] 3L_8622178_SNP [dm6]	C	T	1.210e^-4	0.673	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
3R	23154476	3R_23154476_SNP [dm3] 3R_27328754_SNP [dm6]	T	G	1.211e^-4	0.673	DOWNSTREAM CG3330 INTERGENIC
X	18867827	X_18867827_SNP [dm3] X_18973794_SNP [dm6]	C	T	1.211e^-4	0.673	INTRON CG43759
X	9730603	X_9730603_SNP [dm3] X_9836570_SNP [dm6]	A	C	1.214e^-4	0.673	INTRON CG32698
X	21153099	X_21153099_SNP [dm3] X_21282072_SNP [dm6]	G	T	1.215e^-4	0.673	UPSTREAM CG32521 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16307389	3R_16307389_SNP [dm3] 3R_20481667_SNP [dm6]	T	G	1.216e^-4	0.673	INTRON Gfrl
3R	18821789	3R_18821789_SNP [dm3] 3R_22996067_SNP [dm6]	C	G	1.216e^-4	0.673	UPSTREAM CR43454 INTRON Nha2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9745635	3R_9745635_SNP [dm3] 3R_13919913_SNP [dm6]	G	T	1.221e^-4	0.673	INTERGENIC
2L	16235303	2L_16235303_DEL [dm3] 2L_16235303_DEL [dm6]	TTT	GG	1.229e^-4	0.673	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19138366	2L_19138366_SNP [dm3] 2L_19138366_SNP [dm6]	C	T	1.239e^-4	0.673	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	4844011	X_4844011_SNP [dm3] X_4949978_SNP [dm6]	C	T	1.239e^-4	0.673	SYNONYMOUS_CODING Ptp4E	TF binding site mE1_TFBS_cad
3R	18084228	3R_18084228_SNP [dm3] 3R_22258506_SNP [dm6]	G	A	1.241e^-4	0.673	INTRON SKIP
2R	6815775	2R_6815775_SNP [dm3] 2R_10928270_SNP [dm6]	T	A	1.243e^-4	0.673	INTERGENIC
3L	1998661	3L_1998661_SNP [dm3] 3L_1998661_SNP [dm6]	T	C	1.246e^-4	0.673	INTERGENIC
3L	11624731	3L_11624731_INS [dm3] 3L_11631631_INS [dm6]	T	TTCT	1.256e^-4	0.673	DOWNSTREAM CG18815 INTRON CG32091
2R	7107346	2R_7107346_SNP [dm3] 2R_11219841_SNP [dm6]	A	T	1.264e^-4	0.673	UPSTREAM Syx6 & 1 other INTRON Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	22461077	3L_22461077_SNP [dm3] 3L_22467977_SNP [dm6]	G	T	1.264e^-4	0.673	UTR_3_PRIME CG11438 UPSTREAM CG11437	TF binding site mE1_TFBS_cad
3L	17405412	3L_17405412_SNP [dm3] 3L_17412312_SNP [dm6]	G	A	1.267e^-4	0.673	INTRON blot	TF binding site BDTNP1_TFBS_Med
3L	10513703	3L_10513703_SNP [dm3] 3L_10520603_SNP [dm6]	T	C	1.272e^-4	0.673	INTRON A2bp1
2R	16173125	2R_16173125_SNP [dm3] 2R_20285620_SNP [dm6]	T	C	1.272e^-4	0.673	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3395900	2L_3395900_SNP [dm3] 2L_3395900_SNP [dm6]	G	A	1.275e^-4	0.673	INTERGENIC
3L	11923842	3L_11923842_SNP [dm3] 3L_11930742_SNP [dm6]	C	G	1.281e^-4	0.673	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15721427	3L_15721427_SNP [dm3] 3L_15728327_SNP [dm6]	A	G	1.282e^-4	0.673	UTR_5_PRIME comm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	15251644	2R_15251644_SNP [dm3] 2R_19364139_SNP [dm6]	A	T	1.286e^-4	0.673	INTRON CG10051	TF binding site mE1_TFBS_cad
3L	9327885	3L_9327885_SNP [dm3] 3L_9334785_SNP [dm6]	A	G	1.287e^-4	0.673	SYNONYMOUS_CODING PGRP-LA UPSTREAM PGRP-LA
3L	10420154	3L_10420154_SNP [dm3] 3L_10427054_SNP [dm6]	T	G	1.297e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10320470	2L_10320470_SNP [dm3] 2L_10320470_SNP [dm6]	T	C	1.300e^-4	0.673	INTRON CG5381
3L	22353798	3L_22353798_SNP [dm3] 3L_22360698_SNP [dm6]	C	T	1.300e^-4	0.673	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22403053	3L_22403053_SNP [dm3] 3L_22409953_SNP [dm6]	A	G	1.302e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8609054	3R_8609054_SNP [dm3] 3R_12783332_SNP [dm6]	T	A	1.302e^-4	0.673	UPSTREAM beat-Vc INTERGENIC
X	14810551	X_14810551_SNP [dm3] X_14916518_SNP [dm6]	A	C	1.304e^-4	0.673	DOWNSTREAM Eo INTRON Flo2
2L	20788754	2L_20788754_SNP [dm3] 2L_20788754_SNP [dm6]	T	C	1.305e^-4	0.673	UTR_3_PRIME Pomp & 1 other DOWNSTREAM vari
3R	22604195	3R_22604195_SNP [dm3] 3R_26778473_SNP [dm6]	C	T	1.315e^-4	0.673	INTERGENIC
2L	7849596	2L_7849596_SNP [dm3] 2L_7849596_SNP [dm6]	A	G	1.317e^-4	0.673	SPLICE_SITE_REGION CG14535 INTRON CG14535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21743353	3R_21743353_SNP [dm3] 3R_25917631_SNP [dm6]	C	A	1.333e^-4	0.673	DOWNSTREAM CG42235 INTRON CG42235
2L	16216057	2L_16216057_SNP [dm3] 2L_16216057_SNP [dm6]	G	A	1.342e^-4	0.673	DOWNSTREAM CR43840 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7247184	3L_7247184_SNP [dm3] 3L_7254084_SNP [dm6]	T	A	1.345e^-4	0.673	INTRON CG14830
3R	23496173	3R_23496173_SNP [dm3] 3R_27670451_SNP [dm6]	C	T	1.346e^-4	0.673	SYNONYMOUS_CODING unc80
2R	17896153	2R_17896153_SNP [dm3] 2R_22008648_SNP [dm6]	C	A	1.347e^-4	0.673	INTRON CG34370
3L	14343510	3L_14343510_DEL [dm3] 3L_14350410_DEL [dm6]	TAGATCTCTAACACGTTT...	T	1.350e^-4	0.673	INTRON fz
3L	1997206	3L_1997206_SNP [dm3] 3L_1997206_SNP [dm6]	T	C	1.360e^-4	0.673	INTERGENIC
X	4761001	X_4761001_SNP [dm3] X_4866968_SNP [dm6]	A	G	1.363e^-4	0.673	INTRON CG42594
2L	3396175	2L_3396175_SNP [dm3] 2L_3396175_SNP [dm6]	C	T	1.364e^-4	0.673	INTERGENIC
3L	15392388	3L_15392388_SNP [dm3] 3L_15399288_SNP [dm6]	T	A	1.364e^-4	0.673	INTERGENIC
3R	18767364	3R_18767364_SNP [dm3] 3R_22941642_SNP [dm6]	A	C	1.364e^-4	0.673	INTRON klg
2L	6272313	2L_6272313_INS [dm3] 2L_6272313_INS [dm6]	G	GG	1.364e^-4	0.673	DOWNSTREAM CR42735 INTRON Ddr
2L	9948046	2L_9948046_SNP [dm3] 2L_9948046_SNP [dm6]	G	C	1.367e^-4	0.673	UPSTREAM CG5853 INTERGENIC
2L	4816207	2L_4816207_SNP [dm3] 2L_4816207_SNP [dm6]	T	G	1.368e^-4	0.673	NON_SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
3R	26698153	3R_26698153_SNP [dm3] 3R_30872431_SNP [dm6]	C	T	1.368e^-4	0.673	UPSTREAM CG15545 INTERGENIC	TF binding site mE1_TFBS_cad
2L	20638141	2L_20638141_SNP [dm3] 2L_20638141_SNP [dm6]	G	T	1.370e^-4	0.673	UPSTREAM CR43158 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA transposable element FlyBase
2R	15008501	2R_15008501_SNP [dm3] 2R_19120996_SNP [dm6]	G	A	1.375e^-4	0.673	UTR_3_PRIME 5-HT1A
2R	17082366	2R_17082366_SNP [dm3] 2R_21194861_SNP [dm6]	A	G	1.378e^-4	0.673	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8252265	2L_8252265_SNP [dm3] 2L_8252265_SNP [dm6]	G	T	1.384e^-4	0.673	SYNONYMOUS_CODING CG8086
X	4720135	X_4720135_SNP [dm3] X_4826102_SNP [dm6]	C	T	1.386e^-4	0.673	SYNONYMOUS_CODING CG12682	TF binding site BDTNP1_TFBS_twi
2R	15251686	2R_15251686_DEL [dm3] 2R_19364181_DEL [dm6]	TT	T	1.388e^-4	0.673	INTRON CG10051	TF binding site mE1_TFBS_cad
3L	18822407	3L_18822407_SNP [dm3] 3L_18829307_SNP [dm6]	G	T	1.394e^-4	0.673	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3L	22403052	3L_22403052_SNP [dm3] 3L_22409952_SNP [dm6]	A	G	1.394e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12031547	3R_12031547_SNP [dm3] 3R_16205825_SNP [dm6]	G	A	1.394e^-4	0.673	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	16440636	2L_16440636_SNP [dm3] 2L_16440636_SNP [dm6]	A	T	1.397e^-4	0.673	INTRON CG5888
2L	19879532	2L_19879532_SNP [dm3] 2L_19879532_SNP [dm6]	G	C	1.407e^-4	0.673	INTRON sick
2R	9601147	2R_9601147_SNP [dm3] 2R_13713642_SNP [dm6]	A	G	1.411e^-4	0.673	INTRON fas
3L	14343571	3L_14343571_SNP [dm3] 3L_14350471_SNP [dm6]	T	G	1.412e^-4	0.673	INTRON fz
3L	5678175	3L_5678175_SNP [dm3] 3L_5685075_SNP [dm6]	C	T	1.413e^-4	0.673	INTRON sif
3L	11949307	3L_11949307_SNP [dm3] 3L_11956207_SNP [dm6]	G	C	1.413e^-4	0.673	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2L	10713162	2L_10713162_SNP [dm3] 2L_10713162_SNP [dm6]	A	G	1.414e^-4	0.673	INTERGENIC
2L	7095375	2L_7095375_DEL [dm3] 2L_7095375_DEL [dm6]	GG	G	1.417e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9248357	X_9248357_SNP [dm3] X_9354324_SNP [dm6]	A	G	1.426e^-4	0.673	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15518619	3R_15518619_SNP [dm3] 3R_19692897_SNP [dm6]	T	A	1.431e^-4	0.673	INTRON Naam
3L	20876041	3L_20876041_SNP [dm3] 3L_20882941_SNP [dm6]	A	T	1.431e^-4	0.673	INTRON CG32432
3R	12031403	3R_12031403_SNP [dm3] 3R_16205681_SNP [dm6]	G	A	1.444e^-4	0.673	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13717705	2R_13717705_INS [dm3] 2R_17830200_INS [dm6]	T	TTCTTCT	1.450e^-4	0.673	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2R	16146192	2R_16146192_SNP [dm3] 2R_20258687_SNP [dm6]	C	T	1.451e^-4	0.673	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14628532	2L_14628532_SNP [dm3] 2L_14628532_SNP [dm6]	A	T	1.453e^-4	0.673	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4321703	3R_4321703_SNP [dm3] 3R_8495981_SNP [dm6]	A	G	1.453e^-4	0.673	INTERGENIC
3R	21752131	3R_21752131_SNP [dm3] 3R_25926409_SNP [dm6]	A	C	1.453e^-4	0.673	INTRON CCAP-R
2L	11511643	2L_11511643_SNP [dm3] 2L_11511643_SNP [dm6]	G	A	1.463e^-4	0.673	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_cad
3L	5471392	3L_5471392_SNP [dm3] 3L_5478292_SNP [dm6]	G	A	1.464e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	5926992	2L_5926992_SNP [dm3] 2L_5926992_SNP [dm6]	T	A	1.468e^-4	0.673	INTRON dsf
3L	8010192	3L_8010192_SNP [dm3] 3L_8017092_SNP [dm6]	A	T	1.472e^-4	0.673	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5965629	3R_5965629_SNP [dm3] 3R_10139907_SNP [dm6]	A	T	1.472e^-4	0.673	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3L	677256	3L_677256_SNP [dm3] 3L_677256_SNP [dm6]	G	T	1.475e^-4	0.673	DOWNSTREAM CG17129 INTERGENIC
2R	20821044	2R_20821044_INS [dm3] 2R_24933521_INS [dm6]	T	TTTTTCTACTTATTCAGATC...	1.476e^-4	0.673	INTRON CG30427
2R	20821054	2R_20821054_SNP [dm3] 2R_24933531_SNP [dm6]	A	G	1.476e^-4	0.673	INTRON CG30427
2L	5926991	2L_5926991_SNP [dm3] 2L_5926991_SNP [dm6]	C	T	1.478e^-4	0.673	INTRON dsf
2L	13136394	2L_13136394_SNP [dm3] 2L_13136394_SNP [dm6]	T	G	1.485e^-4	0.674	INTERGENIC
3R	16129089	3R_16129089_SNP [dm3] 3R_20303367_SNP [dm6]	A	G	1.497e^-4	0.677	UTR_3_PRIME cic DOWNSTREAM CG4367
2L	13136391	2L_13136391_SNP [dm3] 2L_13136391_SNP [dm6]	A	G	1.498e^-4	0.677	INTERGENIC
X	20460966	X_20460966_SNP [dm3] X_20589939_SNP [dm6]	A	G	1.511e^-4	0.678	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14057241	2L_14057241_SNP [dm3] 2L_14057241_SNP [dm6]	T	C	1.512e^-4	0.678	INTRON nAChRalpha5
X	12781661	X_12781661_SNP [dm3] X_12887628_SNP [dm6]	G	A	1.515e^-4	0.678	INTRON Pde9
2L	4938201	2L_4938201_SNP [dm3] 2L_4938201_SNP [dm6]	A	T	1.515e^-4	0.678	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19138386	2L_19138386_DEL [dm3] 2L_19138386_DEL [dm6]	TGCTA	T	1.524e^-4	0.681	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17470039	2R_17470039_DEL [dm3] 2R_21582534_DEL [dm6]	GTCTTCAA	CG	1.529e^-4	0.681	UPSTREAM CG30222 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15897422	2R_15897422_SNP [dm3] 2R_20009917_SNP [dm6]	T	G	1.533e^-4	0.681	INTERGENIC
3L	22429367	3L_22429367_SNP [dm3] 3L_22436267_SNP [dm6]	A	T	1.535e^-4	0.681	INTERGENIC
2L	8331514	2L_8331514_SNP [dm3] 2L_8331514_SNP [dm6]	A	G	1.546e^-4	0.683	INTRON CG14275
3L	18418020	3L_18418020_SNP [dm3] 3L_18424920_SNP [dm6]	C	T	1.548e^-4	0.683	INTERGENIC
3R	10703451	3R_10703451_SNP [dm3] 3R_14877729_SNP [dm6]	A	C	1.559e^-4	0.684	INTERGENIC
2L	19159078	2L_19159078_DEL [dm3] 2L_19159078_DEL [dm6]	TT	T	1.560e^-4	0.684	INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10716759	2L_10716759_SNP [dm3] 2L_10716759_SNP [dm6]	T	C	1.563e^-4	0.684	INTERGENIC
3R	17094815	3R_17094815_SNP [dm3] 3R_21269093_SNP [dm6]	A	C	1.564e^-4	0.684	UPSTREAM Rab1 DOWNSTREAM AP-2sigma INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3354204	2L_3354204_SNP [dm3] 2L_3354204_SNP [dm6]	G	A	1.583e^-4	0.685	START_GAINED E23 UTR_5_PRIME E23 INTRON E23
3R	14677761	3R_14677761_SNP [dm3] 3R_18852039_SNP [dm6]	A	T	1.588e^-4	0.685	UPSTREAM CR45633 & 1 other INTERGENIC
3R	21953730	3R_21953730_SNP [dm3] 3R_26128008_SNP [dm6]	C	T	1.591e^-4	0.685	UPSTREAM CG31324 DOWNSTREAM CG14556 INTRON CG31324
3L	17983942	3L_17983942_SNP [dm3] 3L_17990842_SNP [dm6]	T	C	1.592e^-4	0.685	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	12246226	X_12246226_SNP [dm3] X_12352193_SNP [dm6]	A	G	1.593e^-4	0.685	INTERGENIC
3L	1939528	3L_1939528_SNP [dm3] 3L_1939528_SNP [dm6]	A	G	1.594e^-4	0.685	UPSTREAM CG5687 EXON CR44536
3L	13449726	3L_13449726_SNP [dm3] 3L_13456626_SNP [dm6]	T	G	1.598e^-4	0.685	NON_SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16498263	3R_16498263_SNP [dm3] 3R_20672541_SNP [dm6]	G	A	1.601e^-4	0.685	UTR_3_PRIME Cpr92F
2L	3176405	2L_3176405_SNP [dm3] 2L_3176405_SNP [dm6]	G	T	1.605e^-4	0.685	INTRON CG34393
3L	7754480	3L_7754480_SNP [dm3] 3L_7761380_SNP [dm6]	A	G	1.610e^-4	0.685	UTR_5_PRIME Hn INTRON Hn
3L	15802186	3L_15802186_INS [dm3] 3L_15809086_INS [dm6]	T	TCT	1.615e^-4	0.685	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2R	13544611	2R_13544611_SNP [dm3] 2R_17657106_SNP [dm6]	G	T	1.616e^-4	0.685	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9503690	2L_9503690_SNP [dm3] 2L_9503690_SNP [dm6]	A	G	1.624e^-4	0.685	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11997154	3L_11997154_SNP [dm3] 3L_12004054_SNP [dm6]	T	A	1.625e^-4	0.685	UPSTREAM CG6928 INTRON CG6928
2R	9066457	2R_9066457_SNP [dm3] 2R_13178952_SNP [dm6]	T	G	1.630e^-4	0.685	SYNONYMOUS_CODING CG17724 UTR_3_PRIME seq & 1 other DOWNSTREAM seq	TF binding site mE1_TFBS_cad
2R	15193475	2R_15193475_SNP [dm3] 2R_19305970_SNP [dm6]	G	A	1.632e^-4	0.685	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16422189	2L_16422189_SNP [dm3] 2L_16422189_SNP [dm6]	T	C	1.636e^-4	0.685	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	2686003	2R_2686003_SNP [dm3] 2R_6798498_SNP [dm6]	G	T	1.637e^-4	0.685	INTRON Epac
3R	8560615	3R_8560615_SNP [dm3] 3R_12734893_SNP [dm6]	T	A	1.637e^-4	0.685	INTERGENIC
2R	14491067	2R_14491067_SNP [dm3] 2R_18603562_SNP [dm6]	T	C	1.641e^-4	0.686	INTRON GEFmeso
2L	13427131	2L_13427131_SNP [dm3] 2L_13427131_SNP [dm6]	A	C	1.646e^-4	0.686	INTRON CG42784
2R	9254307	2R_9254307_SNP [dm3] 2R_13366802_SNP [dm6]	A	G	1.650e^-4	0.686	INTERGENIC
2R	20194431	2R_20194431_SNP [dm3] 2R_24306908_SNP [dm6]	T	C	1.662e^-4	0.687	INTRON betaTub60D	regulatory region REDfly_CRMs
X	8715608	X_8715608_SNP [dm3] X_8821575_SNP [dm6]	G	A	1.663e^-4	0.687	INTERGENIC
2R	15251691	2R_15251691_SNP [dm3] 2R_19364186_SNP [dm6]	T	C	1.665e^-4	0.687	INTRON CG10051	TF binding site mE1_TFBS_cad
3L	1575193	3L_1575193_SNP [dm3] 3L_1575193_SNP [dm6]	C	T	1.669e^-4	0.687	SYNONYMOUS_CODING CG12004 DOWNSTREAM CG12004
X	14666083	X_14666083_SNP [dm3] X_14772050_SNP [dm6]	G	A	1.671e^-4	0.687	INTERGENIC
X	8865665	X_8865665_SNP [dm3] X_8971632_SNP [dm6]	G	A	1.676e^-4	0.688	INTRON rdgA
3L	9545814	3L_9545814_SNP [dm3] 3L_9552714_SNP [dm6]	T	A	1.693e^-4	0.693	INTRON CG42673
3R	9313366	3R_9313366_SNP [dm3] 3R_13487644_SNP [dm6]	G	A	1.707e^-4	0.693	INTERGENIC
3L	7209404	3L_7209404_SNP [dm3] 3L_7216304_SNP [dm6]	T	C	1.710e^-4	0.693	INTERGENIC
3R	22355125	3R_22355125_SNP [dm3] 3R_26529403_SNP [dm6]	A	T	1.710e^-4	0.693	INTRON plum
3L	22344277	3L_22344277_SNP [dm3] 3L_22351177_SNP [dm6]	G	A	1.711e^-4	0.693	INTRON Ten-m
3L	5064804	3L_5064804_SNP [dm3] 3L_5064804_SNP [dm6]	T	C	1.720e^-4	0.693	INTRON Con
2L	10008023	2L_10008023_SNP [dm3] 2L_10008023_SNP [dm6]	T	A	1.728e^-4	0.693	UTR_3_PRIME CG4747 DOWNSTREAM CG4747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11821301	X_11821301_SNP [dm3] X_11927268_SNP [dm6]	C	A	1.729e^-4	0.693	INTRON CG10362
3R	4321679	3R_4321679_SNP [dm3] 3R_8495957_SNP [dm6]	A	T	1.737e^-4	0.693	INTERGENIC
2L	4032692	2L_4032692_SNP [dm3] 2L_4032692_SNP [dm6]	C	T	1.747e^-4	0.693	NON_SYNONYMOUS_CODING ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	10701100	3L_10701100_SNP [dm3] 3L_10708000_SNP [dm6]	T	A	1.748e^-4	0.693	INTERGENIC
3L	17822509	3L_17822509_SNP [dm3] 3L_17829409_SNP [dm6]	G	A	1.758e^-4	0.693	SYNONYMOUS_CODING Grd
X	21182803	X_21182803_SNP [dm3] X_21311776_SNP [dm6]	C	A	1.774e^-4	0.693	INTRON CG1801
2L	19159662	2L_19159662_SNP [dm3] 2L_19159662_SNP [dm6]	T	G	1.783e^-4	0.693	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	14432271	3L_14432271_SNP [dm3] 3L_14439171_SNP [dm6]	T	G	1.785e^-4	0.693	INTRON bbg
3L	8707511	3L_8707511_SNP [dm3] 3L_8714411_SNP [dm6]	A	C	1.790e^-4	0.693	INTERGENIC	regulatory region REDfly_CRMs
2R	10373099	2R_10373099_SNP [dm3] 2R_14485594_SNP [dm6]	T	C	1.791e^-4	0.693	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9503630	2L_9503630_SNP [dm3] 2L_9503630_SNP [dm6]	A	C	1.797e^-4	0.693	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad
2R	10871172	2R_10871172_SNP [dm3] 2R_14983667_SNP [dm6]	G	T	1.806e^-4	0.693	DOWNSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_h
3L	17675889	3L_17675889_SNP [dm3] 3L_17682789_SNP [dm6]	A	C	1.808e^-4	0.693	INTRON CG34251
3R	21708757	3R_21708757_SNP [dm3] 3R_25883035_SNP [dm6]	T	G	1.814e^-4	0.693	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3R	26876979	3R_26876979_SNP [dm3] 3R_31051257_SNP [dm6]	C	T	1.815e^-4	0.693	SYNONYMOUS_CODING Aph-4 UPSTREAM mir-4948	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17891056	X_17891056_INS [dm3] X_17997023_INS [dm6]	A	AA	1.822e^-4	0.693	INTRON Sh
3L	22407024	3L_22407024_SNP [dm3] 3L_22413924_SNP [dm6]	G	T	1.823e^-4	0.693	INTERGENIC
2L	3395883	2L_3395883_SNP [dm3] 2L_3395883_SNP [dm6]	T	C	1.826e^-4	0.693	INTERGENIC
3L	16683522	3L_16683522_SNP [dm3] 3L_16690422_SNP [dm6]	G	T	1.827e^-4	0.693	DOWNSTREAM CR45179 INTRON Lasp & 2 others
3L	15609635	3L_15609635_SNP [dm3] 3L_15616535_SNP [dm6]	A	G	1.831e^-4	0.693	INTRON comm3
2L	3356503	2L_3356503_SNP [dm3] 2L_3356503_SNP [dm6]	A	C	1.835e^-4	0.693	INTERGENIC
3R	12031555	3R_12031555_SNP [dm3] 3R_16205833_SNP [dm6]	T	A	1.842e^-4	0.693	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	10133742	3R_10133742_SNP [dm3] 3R_14308020_SNP [dm6]	A	G	1.849e^-4	0.693	INTRON su_Hw_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	11063461	2R_11063461_SNP [dm3] 2R_15175956_SNP [dm6]	T	A	1.857e^-4	0.693	INTRON igl
3R	14677756	3R_14677756_SNP [dm3] 3R_18852034_SNP [dm6]	T	A	1.862e^-4	0.693	UPSTREAM CR45633 & 1 other INTERGENIC
2L	7095371	2L_7095371_SNP [dm3] 2L_7095371_SNP [dm6]	A	G	1.875e^-4	0.693	INTERGENIC	TF binding site mE1_TFBS_HSA
X	7535644	X_7535644_INS [dm3] X_7641611_INS [dm6]	G	GTGTG	1.876e^-4	0.693	INTRON ct
2L	18862397	2L_18862397_SNP [dm3] 2L_18862397_SNP [dm6]	T	A	1.879e^-4	0.693	INTRON tup	TF binding site BDTNP1_TFBS_da
3L	11922600	3L_11922600_SNP [dm3] 3L_11929500_SNP [dm6]	C	G	1.882e^-4	0.693	INTRON CG44837 & 1 other
X	18845688	X_18845688_SNP [dm3] X_18951655_SNP [dm6]	A	T	1.887e^-4	0.693	INTRON CG43759
2L	11934309	2L_11934309_SNP [dm3] 2L_11934309_SNP [dm6]	T	A	1.889e^-4	0.693	UPSTREAM Or33a INTERGENIC
X	17728650	X_17728650_SNP [dm3] X_17834617_SNP [dm6]	C	A	1.891e^-4	0.693	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	19837352	3R_19837352_SNP [dm3] 3R_24011630_SNP [dm6]	C	T	1.892e^-4	0.693	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
3L	22414989	3L_22414989_SNP [dm3] 3L_22421889_SNP [dm6]	A	G	1.895e^-4	0.693	UPSTREAM CR45237 INTERGENIC
2R	10523797	2R_10523797_SNP [dm3] 2R_14636292_SNP [dm6]	T	C	1.900e^-4	0.693	INTERGENIC
2R	13228438	2R_13228438_SNP [dm3] 2R_17340933_SNP [dm6]	A	G	1.900e^-4	0.693	INTRON mbl
3L	15642631	3L_15642631_SNP [dm3] 3L_15649531_SNP [dm6]	G	A	1.908e^-4	0.693	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	1.909e^-4	0.693	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	19163534	2L_19163534_SNP [dm3] 2L_19163534_SNP [dm6]	T	C	1.912e^-4	0.693	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21298190	3R_21298190_SNP [dm3] 3R_25472468_SNP [dm6]	A	G	1.925e^-4	0.693	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19064083	3R_19064083_SNP [dm3] 3R_23238361_SNP [dm6]	G	A	1.943e^-4	0.693	INTRON CG4467
3R	22252283	3R_22252283_DEL [dm3] 3R_26426561_DEL [dm6]	TTGATTTAAAAGACGGCTAG...	T	1.950e^-4	0.693	UPSTREAM CG34291 INTRON CR31084
3R	20206445	3R_20206445_SNP [dm3] 3R_24380723_SNP [dm6]	A	T	1.951e^-4	0.693	INTERGENIC
3R	21744544	3R_21744544_SNP [dm3] 3R_25918822_SNP [dm6]	C	T	1.956e^-4	0.693	SYNONYMOUS_CODING CG42235 INTRON CG42235
3L	18553973	3L_18553973_SNP [dm3] 3L_18560873_SNP [dm6]	T	A	1.961e^-4	0.693	INTRON AstC-R1
3L	15392798	3L_15392798_SNP [dm3] 3L_15399698_SNP [dm6]	A	T	1.966e^-4	0.693	INTERGENIC
2L	9948033	2L_9948033_SNP [dm3] 2L_9948033_SNP [dm6]	A	C	1.966e^-4	0.693	UPSTREAM CG5853 INTERGENIC
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	1.971e^-4	0.693	INTRON slou
X	11566054	X_11566054_INS [dm3] X_11672021_INS [dm6]	T	TAT	1.975e^-4	0.693	SPLICE_SITE_REGION Ptp10D INTRON Ptp10D
3R	18523309	3R_18523309_SNP [dm3] 3R_22697587_SNP [dm6]	T	A	1.977e^-4	0.693	UPSTREAM Cyp6d4 INTRON cd
3L	8609549	3L_8609549_SNP [dm3] 3L_8616449_SNP [dm6]	G	A	2.001e^-4	0.693	UTR_3_PRIME CG6282 UPSTREAM S-Lap1
2L	8895726	2L_8895726_INS [dm3] 2L_8895726_INS [dm6]	T	TT	2.005e^-4	0.693	INTERGENIC
2L	9694581	2L_9694581_SNP [dm3] 2L_9694581_SNP [dm6]	C	A	2.005e^-4	0.693	INTRON Pka-C1
3R	22135772	3R_22135772_DEL [dm3] 3R_26310050_DEL [dm6]	CCGTAAAC	C	2.010e^-4	0.693	INTERGENIC
3R	24646602	3R_24646602_SNP [dm3] 3R_28820880_SNP [dm6]	G	T	2.013e^-4	0.693	NON_SYNONYMOUS_CODING CG1647	TF binding site mE1_TFBS_ttk
3L	14364821	3L_14364821_SNP [dm3] 3L_14371721_SNP [dm6]	G	T	2.020e^-4	0.693	INTERGENIC
2L	16932911	2L_16932911_SNP [dm3] 2L_16932911_SNP [dm6]	T	G	2.021e^-4	0.693	INTERGENIC
3R	16717004	3R_16717004_SNP [dm3] 3R_20891282_SNP [dm6]	G	T	2.024e^-4	0.693	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	19156816	2L_19156816_SNP [dm3] 2L_19156816_SNP [dm6]	C	G	2.026e^-4	0.693	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	21752103	3R_21752103_SNP [dm3] 3R_25926381_SNP [dm6]	A	T	2.032e^-4	0.693	INTRON CCAP-R
3R	10114836	3R_10114836_SNP [dm3] 3R_14289114_SNP [dm6]	A	C	2.037e^-4	0.693	UTR_5_PRIME CG12207 UPSTREAM CG12207 DOWNSTREAM CR45596	TF binding site mE1_TFBS_Trl
2R	6745448	2R_6745448_SNP [dm3] 2R_10857943_SNP [dm6]	A	G	2.041e^-4	0.693	INTRON CG30015
3R	18371293	3R_18371293_SNP [dm3] 3R_22545571_SNP [dm6]	A	G	2.044e^-4	0.693	INTRON AdipoR
2R	10479610	2R_10479610_SNP [dm3] 2R_14592105_SNP [dm6]	A	G	2.047e^-4	0.693	UPSTREAM CG12869 INTRON CG12869	TF binding site mE1_TFBS_hkb
3R	5025451	3R_5025451_SNP [dm3] 3R_9199729_SNP [dm6]	G	A	2.050e^-4	0.693	INTRON pum
3L	16705757	3L_16705757_SNP [dm3] 3L_16712657_SNP [dm6]	C	A	2.054e^-4	0.693	UTR_5_PRIME Dab UPSTREAM Lasp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	9346030	2L_9346030_SNP [dm3] 2L_9346030_SNP [dm6]	T	A	2.055e^-4	0.693	INTERGENIC
3R	26216472	3R_26216472_SNP [dm3] 3R_30390750_SNP [dm6]	T	G	2.061e^-4	0.693	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3R	17919902	3R_17919902_SNP [dm3] 3R_22094180_SNP [dm6]	C	A	2.062e^-4	0.693	INTRON CG5778	TF binding site mE1_TFBS_run
2L	14566262	2L_14566262_SNP [dm3] 2L_14566262_SNP [dm6]	A	G	2.065e^-4	0.693	INTERGENIC
2R	12389480	2R_12389480_SNP [dm3] 2R_16501975_SNP [dm6]	T	C	2.069e^-4	0.693	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2R	13544469	2R_13544469_SNP [dm3] 2R_17656964_SNP [dm6]	C	T	2.071e^-4	0.693	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10373100	2R_10373100_SNP [dm3] 2R_14485595_SNP [dm6]	T	C	2.073e^-4	0.693	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21656833	3R_21656833_SNP [dm3] 3R_25831111_SNP [dm6]	T	C	2.073e^-4	0.693	UPSTREAM Sfp96F & 1 other DOWNSTREAM Mst57Da INTERGENIC	regulatory region REDfly_CRMs
2R	5105767	2R_5105767_SNP [dm3] 2R_9218262_SNP [dm6]	C	T	2.074e^-4	0.693	INTERGENIC
3R	9313367	3R_9313367_SNP [dm3] 3R_13487645_SNP [dm6]	C	A	2.077e^-4	0.693	INTERGENIC
3L	11936524	3L_11936524_SNP [dm3] 3L_11943424_SNP [dm6]	T	C	2.082e^-4	0.693	UTR_3_PRIME Rpt4R DOWNSTREAM CG5883
3L	11936715	3L_11936715_SNP [dm3] 3L_11943615_SNP [dm6]	A	C	2.082e^-4	0.693	DOWNSTREAM CG5883 & 1 other INTERGENIC
3L	11936873	3L_11936873_SNP [dm3] 3L_11943773_SNP [dm6]	G	A	2.082e^-4	0.693	SYNONYMOUS_CODING CG5883 DOWNSTREAM Rpt4R
3R	3868804	3R_3868804_SNP [dm3] 3R_8043082_SNP [dm6]	C	A	2.085e^-4	0.693	INTRON CG43060	transposable element FlyBase
3L	13429059	3L_13429059_SNP [dm3] 3L_13435959_SNP [dm6]	A	G	2.087e^-4	0.693	SYNONYMOUS_CODING CG10154 UPSTREAM CG10713	TF binding site mE1_TFBS_HSA
2L	9383814	2L_9383814_SNP [dm3] 2L_9383814_SNP [dm6]	G	C	2.094e^-4	0.693	INTRON Shawl
2L	9383819	2L_9383819_SNP [dm3] 2L_9383819_SNP [dm6]	T	A	2.094e^-4	0.693	INTRON Shawl
3L	8418035	3L_8418035_SNP [dm3] 3L_8424935_SNP [dm6]	G	C	2.098e^-4	0.693	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	21748261	3R_21748261_SNP [dm3] 3R_25922539_SNP [dm6]	T	G	2.106e^-4	0.693	UTR_5_PRIME CG14546 DOWNSTREAM CCAP-R
2L	20405855	2L_20405855_SNP [dm3] 2L_20405855_SNP [dm6]	A	T	2.108e^-4	0.693	INTRON CG10947
X	13761054	X_13761054_SNP [dm3] X_13867021_SNP [dm6]	T	A	2.114e^-4	0.693	UTR_3_PRIME mamo INTRON mamo
3L	15642671	3L_15642671_SNP [dm3] 3L_15649571_SNP [dm6]	T	A	2.120e^-4	0.693	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
2R	20138434	2R_20138434_SNP [dm3] 2R_24250911_SNP [dm6]	G	C	2.122e^-4	0.693	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
2R	20138542	2R_20138542_SNP [dm3] 2R_24251019_SNP [dm6]	T	C	2.122e^-4	0.693	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
3L	8061728	3L_8061728_SNP [dm3] 3L_8068628_SNP [dm6]	C	T	2.123e^-4	0.693	NON_SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
2R	15008494	2R_15008494_SNP [dm3] 2R_19120989_SNP [dm6]	A	T	2.128e^-4	0.693	UTR_3_PRIME 5-HT1A
3L	18009166	3L_18009166_SNP [dm3] 3L_18016066_SNP [dm6]	T	G	2.133e^-4	0.693	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	11739363	3R_11739363_SNP [dm3] 3R_15913641_SNP [dm6]	C	T	2.135e^-4	0.693	SYNONYMOUS_CODING CG45105 UTR_3_PRIME CG45105 INTRON CG45105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	12781657	X_12781657_SNP [dm3] X_12887624_SNP [dm6]	T	G	2.135e^-4	0.693	INTRON Pde9
3L	17028409	3L_17028409_SNP [dm3] 3L_17035309_SNP [dm6]	A	T	2.140e^-4	0.693	UPSTREAM beg INTERGENIC
2L	18784309	2L_18784309_SNP [dm3] 2L_18784309_SNP [dm6]	G	T	2.140e^-4	0.693	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	11212482	3L_11212482_SNP [dm3] 3L_11219382_SNP [dm6]	A	G	2.142e^-4	0.693	INTRON CG42671
X	13291390	X_13291390_SNP [dm3] X_13397357_SNP [dm6]	G	C	2.147e^-4	0.693	DOWNSTREAM CR44621 INTRON CG1673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11846738	2L_11846738_SNP [dm3] 2L_11846738_SNP [dm6]	G	A	2.148e^-4	0.693	UPSTREAM Mal-B1 INTRON Pde1c
X	16891523	X_16891523_SNP [dm3] X_16997490_SNP [dm6]	T	A	2.157e^-4	0.693	INTRON CG45002
2R	20825368	2R_20825368_SNP [dm3] 2R_24937845_SNP [dm6]	T	G	2.159e^-4	0.693	UPSTREAM CG3760 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3265691	3L_3265691_SNP [dm3] 3L_3265691_SNP [dm6]	C	T	2.161e^-4	0.693	INTRON ckd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11923035	3R_11923035_SNP [dm3] 3R_16097313_SNP [dm6]	A	G	2.162e^-4	0.693	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8437159	3R_8437159_SNP [dm3] 3R_12611437_SNP [dm6]	G	T	2.164e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	21708484	3R_21708484_SNP [dm3] 3R_25882762_SNP [dm6]	A	T	2.175e^-4	0.693	INTRON SppL	TF binding site BDTNP1_TFBS_dl
X	1816617	X_1816617_SNP [dm3] X_1922584_SNP [dm6]	C	T	2.179e^-4	0.693	SYNONYMOUS_CODING eIF2B-epsilon UPSTREAM Ocrl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10739902	3R_10739902_SNP [dm3] 3R_14914180_SNP [dm6]	T	A	2.180e^-4	0.693	INTERGENIC
3R	22733207	3R_22733207_SNP [dm3] 3R_26907485_SNP [dm6]	G	A	2.180e^-4	0.693	INTRON T48
3L	15014728	3L_15014728_SNP [dm3] 3L_15021628_SNP [dm6]	C	A	2.184e^-4	0.693	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21752116	3R_21752116_SNP [dm3] 3R_25926394_SNP [dm6]	A	G	2.186e^-4	0.693	INTRON CCAP-R
2R	15702502	2R_15702502_SNP [dm3] 2R_19814997_SNP [dm6]	T	C	2.190e^-4	0.693	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
X	19435105	X_19435105_SNP [dm3] X_19541072_SNP [dm6]	A	T	2.197e^-4	0.693	INTRON CG32532
X	17132558	X_17132558_SNP [dm3] X_17238525_SNP [dm6]	A	G	2.201e^-4	0.693	INTRON f
3L	5678256	3L_5678256_SNP [dm3] 3L_5685156_SNP [dm6]	T	C	2.204e^-4	0.693	INTRON sif
3L	11266967	3L_11266967_SNP [dm3] 3L_11273867_SNP [dm6]	A	T	2.206e^-4	0.693	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26216460	3R_26216460_SNP [dm3] 3R_30390738_SNP [dm6]	A	G	2.207e^-4	0.693	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3L	22451452	3L_22451452_SNP [dm3] 3L_22458352_SNP [dm6]	C	T	2.213e^-4	0.693	DOWNSTREAM laza INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	20963049	X_20963049_SNP [dm3] X_21092022_SNP [dm6]	T	A	2.217e^-4	0.693	INTERGENIC
2L	16422184	2L_16422184_SNP [dm3] 2L_16422184_SNP [dm6]	G	T	2.218e^-4	0.693	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	20830650	2R_20830650_SNP [dm3] 2R_24943127_SNP [dm6]	A	T	2.231e^-4	0.693	UPSTREAM Tina-1 DOWNSTREAM CG15861 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23546577	3R_23546577_SNP [dm3] 3R_27720855_SNP [dm6]	T	A	2.233e^-4	0.693	INTERGENIC
3L	15683970	3L_15683970_SNP [dm3] 3L_15690870_SNP [dm6]	T	A	2.233e^-4	0.693	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	19686368	X_19686368_SNP [dm3] X_19792335_SNP [dm6]	A	G	2.237e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15713216	3L_15713216_SNP [dm3] 3L_15720116_SNP [dm6]	G	A	2.238e^-4	0.693	DOWNSTREAM CG42570 INTERGENIC
3R	3960510	3R_3960510_SNP [dm3] 3R_8134788_SNP [dm6]	A	T	2.240e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21752113	3R_21752113_SNP [dm3] 3R_25926391_SNP [dm6]	C	T	2.242e^-4	0.693	INTRON CCAP-R
3L	10760499	3L_10760499_SNP [dm3] 3L_10767399_SNP [dm6]	G	C	2.242e^-4	0.693	INTERGENIC
X	16347729	X_16347729_SNP [dm3] X_16453696_SNP [dm6]	G	C	2.245e^-4	0.693	UTR_3_PRIME Rbp2 DOWNSTREAM Rbp2
2R	9929263	2R_9929263_SNP [dm3] 2R_14041758_SNP [dm6]	T	C	2.253e^-4	0.693	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1997139	3L_1997139_SNP [dm3] 3L_1997139_SNP [dm6]	T	C	2.257e^-4	0.693	INTERGENIC
X	9730607	X_9730607_SNP [dm3] X_9836574_SNP [dm6]	C	A	2.259e^-4	0.693	INTRON CG32698
3R	26610457	3R_26610457_SNP [dm3] 3R_30784735_SNP [dm6]	C	T	2.259e^-4	0.693	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8862642	2R_8862642_SNP [dm3] 2R_12975137_SNP [dm6]	A	G	2.262e^-4	0.693	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20830502	3R_20830502_SNP [dm3] 3R_25004780_SNP [dm6]	A	C	2.265e^-4	0.693	INTRON tnc	TF binding site mE1_TFBS_chinmo
2R	13227127	2R_13227127_MNP [dm3] 2R_17339622_MNP [dm6]	CACC	ATTT	2.271e^-4	0.693	INTRON mbl
X	7150937	X_7150937_SNP [dm3] X_7256904_SNP [dm6]	A	G	2.274e^-4	0.693	INTRON CR44357
2R	13114996	2R_13114996_SNP [dm3] 2R_17227491_SNP [dm6]	A	T	2.278e^-4	0.693	INTRON mbl
2R	15251659	2R_15251659_DEL [dm3] 2R_19364154_DEL [dm6]	CC	C	2.278e^-4	0.693	INTRON CG10051	TF binding site mE1_TFBS_cad
3L	7754492	3L_7754492_SNP [dm3] 3L_7761392_SNP [dm6]	C	T	2.284e^-4	0.693	UTR_5_PRIME Hn INTRON Hn
3R	25694208	3R_25694208_SNP [dm3] 3R_29868486_SNP [dm6]	G	A	2.287e^-4	0.693	UPSTREAM Zip99C & 1 other INTRON Zip99C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_sens
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	2.290e^-4	0.693	DOWNSTREAM CG17129 INTERGENIC
3L	10965871	3L_10965871_SNP [dm3] 3L_10972771_SNP [dm6]	A	T	2.292e^-4	0.693	INTRON CG14147
X	6858361	X_6858361_SNP [dm3] X_6964328_SNP [dm6]	G	A	2.293e^-4	0.693	INTRON CG32732 & 1 other	TF binding site mE1_TFBS_chinmo
2R	8440751	2R_8440751_SNP [dm3] 2R_12553246_SNP [dm6]	C	T	2.295e^-4	0.693	INTRON fra
X	18993146	X_18993146_SNP [dm3] X_19099113_SNP [dm6]	C	G	2.298e^-4	0.693	INTERGENIC
3R	26216464	3R_26216464_SNP [dm3] 3R_30390742_SNP [dm6]	A	T	2.306e^-4	0.693	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19151121	2R_19151121_SNP [dm3] 2R_23263598_SNP [dm6]	C	G	2.309e^-4	0.693	DOWNSTREAM CG12782 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18127514	3R_18127514_SNP [dm3] 3R_22301792_SNP [dm6]	C	T	2.312e^-4	0.693	SYNONYMOUS_CODING CG7084
3R	18910314	3R_18910314_SNP [dm3] 3R_23084592_SNP [dm6]	C	G	2.335e^-4	0.693	INTRON CG13830	TF binding site mE1_TFBS_chinmo
2R	14453838	2R_14453838_SNP [dm3] 2R_18566333_SNP [dm6]	G	T	2.349e^-4	0.693	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17342973	X_17342973_SNP [dm3] X_17448940_SNP [dm6]	C	T	2.352e^-4	0.693	UPSTREAM p-cup DOWNSTREAM CG8568 INTERGENIC
3R	13435834	3R_13435834_SNP [dm3] 3R_17610112_SNP [dm6]	G	T	2.354e^-4	0.693	SYNONYMOUS_CODING CG14329 DOWNSTREAM Edg91
3L	13550569	3L_13550569_SNP [dm3] 3L_13557469_SNP [dm6]	A	G	2.355e^-4	0.693	UPSTREAM CR45178 INTRON bru-3
3R	23546625	3R_23546625_SNP [dm3] 3R_27720903_SNP [dm6]	G	A	2.357e^-4	0.693	INTERGENIC
3L	1996808	3L_1996808_SNP [dm3] 3L_1996808_SNP [dm6]	G	A	2.361e^-4	0.693	INTERGENIC
3R	21298246	3R_21298246_SNP [dm3] 3R_25472524_SNP [dm6]	G	A	2.368e^-4	0.693	UTR_5_PRIME Fur1 UPSTREAM Vps33B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	4706894	X_4706894_SNP [dm3] X_4812861_SNP [dm6]	G	A	2.369e^-4	0.693	INTERGENIC
2L	5926112	2L_5926112_SNP [dm3] 2L_5926112_SNP [dm6]	T	C	2.371e^-4	0.693	UTR_5_PRIME dsf UPSTREAM CR43926
3R	26126977	3R_26126977_SNP [dm3] 3R_30301255_SNP [dm6]	A	G	2.376e^-4	0.693	INTRON hdc
3R	16306921	3R_16306921_SNP [dm3] 3R_20481199_SNP [dm6]	T	A	2.379e^-4	0.693	UTR_5_PRIME Gfrl INTRON Gfrl
2R	10549536	2R_10549536_SNP [dm3] 2R_14662031_SNP [dm6]	A	G	2.386e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24257574	3R_24257574_SNP [dm3] 3R_28431852_SNP [dm6]	T	C	2.395e^-4	0.693	INTRON beat-VI
X	5189858	X_5189858_SNP [dm3] X_5295825_SNP [dm6]	A	T	2.396e^-4	0.693	UPSTREAM CG42749 INTERGENIC
X	19686365	X_19686365_SNP [dm3] X_19792332_SNP [dm6]	T	C	2.400e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16307341	3R_16307341_SNP [dm3] 3R_20481619_SNP [dm6]	C	T	2.410e^-4	0.693	UTR_5_PRIME Gfrl INTRON Gfrl
3R	17805385	3R_17805385_SNP [dm3] 3R_21979663_SNP [dm6]	A	C	2.410e^-4	0.693	INTRON Eip93F
2L	8895777	2L_8895777_SNP [dm3] 2L_8895777_SNP [dm6]	T	A	2.412e^-4	0.693	INTERGENIC
X	19071178	X_19071178_SNP [dm3] X_19177145_SNP [dm6]	G	A	2.416e^-4	0.693	UTR_3_PRIME CG7556
3L	11934516	3L_11934516_SNP [dm3] 3L_11941416_SNP [dm6]	C	T	2.417e^-4	0.693	UPSTREAM Rpt4R INTERGENIC
2R	10884199	2R_10884199_SNP [dm3] 2R_14996694_SNP [dm6]	C	T	2.422e^-4	0.693	INTERGENIC	TF binding site mE1_TFBS_inv
X	20431285	X_20431285_SNP [dm3] X_20560258_SNP [dm6]	A	G	2.424e^-4	0.693	INTRON RunxB
2R	9451290	2R_9451290_SNP [dm3] 2R_13563785_SNP [dm6]	A	G	2.427e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	22393481	3L_22393481_SNP [dm3] 3L_22400381_SNP [dm6]	A	G	2.431e^-4	0.693	INTRON Ten-m	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	10543684	3L_10543684_SNP [dm3] 3L_10550584_SNP [dm6]	G	T	2.431e^-4	0.693	INTRON A2bp1
2L	19159300	2L_19159300_SNP [dm3] 2L_19159300_SNP [dm6]	G	C	2.432e^-4	0.693	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
3R	22246197	3R_22246197_SNP [dm3] 3R_26420475_SNP [dm6]	C	T	2.433e^-4	0.693	INTERGENIC
3L	17984970	3L_17984970_SNP [dm3] 3L_17991870_SNP [dm6]	G	A	2.436e^-4	0.693	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	1996662	3L_1996662_SNP [dm3] 3L_1996662_SNP [dm6]	A	G	2.439e^-4	0.693	INTERGENIC
3R	26891554	3R_26891554_SNP [dm3] 3R_31065832_SNP [dm6]	C	T	2.441e^-4	0.693	INTRON Sox100B
3L	13284622	3L_13284622_SNP [dm3] 3L_13291522_SNP [dm6]	A	T	2.447e^-4	0.693	EXON CR43912
2L	16837737	2L_16837737_INS [dm3] 2L_16837737_INS [dm6]	T	TC	2.448e^-4	0.693	UPSTREAM SclB & 2 others INTERGENIC
3L	18436077	3L_18436077_SNP [dm3] 3L_18442977_SNP [dm6]	A	T	2.449e^-4	0.693	INTERGENIC
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	2.450e^-4	0.693	INTERGENIC
2L	17757724	2L_17757724_SNP [dm3] 2L_17757724_SNP [dm6]	A	T	2.451e^-4	0.693	INTRON CadN	TF binding site mE1_TFBS_cad
3L	1062052	3L_1062052_SNP [dm3] 3L_1062052_SNP [dm6]	G	C	2.451e^-4	0.693	INTRON bab1
3L	15642648	3L_15642648_SNP [dm3] 3L_15649548_SNP [dm6]	G	A	2.453e^-4	0.693	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
2R	13115246	2R_13115246_SNP [dm3] 2R_17227741_SNP [dm6]	T	C	2.462e^-4	0.693	INTRON mbl
2L	19138373	2L_19138373_SNP [dm3] 2L_19138373_SNP [dm6]	A	T	2.462e^-4	0.693	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	19377550	X_19377550_SNP [dm3] X_19483517_SNP [dm6]	A	C	2.468e^-4	0.693	SYNONYMOUS_CODING Nat1	TF binding site mE1_TFBS_cad
2L	9173761	2L_9173761_SNP [dm3] 2L_9173761_SNP [dm6]	C	T	2.468e^-4	0.693	INTRON tai	TF binding site mE1_TFBS_kn
2L	9173757	2L_9173757_SNP [dm3] 2L_9173757_SNP [dm6]	T	G	2.469e^-4	0.693	INTRON tai	TF binding site mE1_TFBS_kn
2L	9380726	2L_9380726_SNP [dm3] 2L_9380726_SNP [dm6]	A	T	2.473e^-4	0.693	INTRON Shawl
X	14321465	X_14321465_SNP [dm3] X_14427432_SNP [dm6]	T	A	2.474e^-4	0.693	INTRON dpr8
2R	19393140	2R_19393140_SNP [dm3] 2R_23505617_SNP [dm6]	C	T	2.477e^-4	0.693	INTERGENIC
2R	14098879	2R_14098879_SNP [dm3] 2R_18211374_SNP [dm6]	C	G	2.482e^-4	0.693	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25027355	3R_25027355_SNP [dm3] 3R_29201633_SNP [dm6]	T	C	2.494e^-4	0.693	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19066061	3R_19066061_SNP [dm3] 3R_23240339_SNP [dm6]	A	G	2.498e^-4	0.693	UPSTREAM CG4467 INTRON CG4467
2L	6259517	2L_6259517_DEL [dm3] 2L_6259517_DEL [dm6]	AAAAA	A	2.498e^-4	0.693	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4007581	2L_4007581_SNP [dm3] 2L_4007581_SNP [dm6]	G	A	2.505e^-4	0.693	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2R	4512754	2R_4512754_SNP [dm3] 2R_8625249_SNP [dm6]	G	A	2.507e^-4	0.693	UPSTREAM Vps25 DOWNSTREAM beta3GalTII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	7534509	X_7534509_SNP [dm3] X_7640476_SNP [dm6]	T	C	2.517e^-4	0.693	INTRON ct
3L	2575388	3L_2575388_SNP [dm3] 3L_2575388_SNP [dm6]	A	T	2.522e^-4	0.693	INTRON msn
X	17729342	X_17729342_SNP [dm3] X_17835309_SNP [dm6]	T	C	2.523e^-4	0.693	INTRON CG6398
X	11653657	X_11653657_INS [dm3] X_11759624_INS [dm6]	A	AA	2.531e^-4	0.693	INTRON m
3R	25694164	3R_25694164_SNP [dm3] 3R_29868442_SNP [dm6]	T	A	2.541e^-4	0.693	UPSTREAM Zip99C & 1 other INTRON Zip99C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	13227124	2R_13227124_SNP [dm3] 2R_17339619_SNP [dm6]	G	T	2.552e^-4	0.693	INTRON mbl
3L	22402924	3L_22402924_DEL [dm3] 3L_22409824_DEL [dm6]	CCTTT	C	2.553e^-4	0.693	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9403035	2L_9403035_SNP [dm3] 2L_9403035_SNP [dm6]	T	A	2.553e^-4	0.693	INTRON Shawl
3R	23571322	3R_23571322_SNP [dm3] 3R_27745600_SNP [dm6]	T	G	2.553e^-4	0.693	INTRON Ets98B
3R	9746483	3R_9746483_DEL [dm3] 3R_13920761_DEL [dm6]	TTTG	T	2.562e^-4	0.693	INTERGENIC
2R	19373764	2R_19373764_SNP [dm3] 2R_23486241_SNP [dm6]	G	C	2.564e^-4	0.693	INTRON CG43795
3R	13202531	3R_13202531_SNP [dm3] 3R_17376809_SNP [dm6]	C	T	2.564e^-4	0.693	INTRON Brf
3R	16858938	3R_16858938_SNP [dm3] 3R_21033216_SNP [dm6]	T	C	2.566e^-4	0.693	SYNONYMOUS_CODING Dhc93AB
3R	4107729	3R_4107729_SNP [dm3] 3R_8282007_SNP [dm6]	C	T	2.573e^-4	0.693	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	20636635	2L_20636635_SNP [dm3] 2L_20636635_SNP [dm6]	C	A	2.580e^-4	0.693	INTERGENIC	transposable element FlyBase
3R	18059183	3R_18059183_SNP [dm3] 3R_22233461_SNP [dm6]	G	A	2.580e^-4	0.693	INTRON SKIP
X	6810137	X_6810137_SNP [dm3] X_6916104_SNP [dm6]	T	C	2.583e^-4	0.693	INTRON CG14431
3L	12385790	3L_12385790_SNP [dm3] 3L_12392690_SNP [dm6]	C	T	2.585e^-4	0.693	INTERGENIC
2L	19159452	2L_19159452_SNP [dm3] 2L_19159452_SNP [dm6]	A	T	2.587e^-4	0.693	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
3R	19482728	3R_19482728_SNP [dm3] 3R_23657006_SNP [dm6]	T	C	2.589e^-4	0.693	INTRON CG31145
2R	14182491	2R_14182491_SNP [dm3] 2R_18294986_SNP [dm6]	T	G	2.590e^-4	0.693	NON_SYNONYMOUS_CODING CG18536 SPLICE_SITE_REGION CG18536 UPSTREAM CG18537 DOWNSTREAM CG14502 INTRON sbb
2L	3355127	2L_3355127_SNP [dm3] 2L_3355127_SNP [dm6]	G	C	2.590e^-4	0.693	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11639194	2R_11639194_SNP [dm3] 2R_15751689_SNP [dm6]	C	T	2.592e^-4	0.693	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21219033	3R_21219033_SNP [dm3] 3R_25393311_SNP [dm6]	A	G	2.594e^-4	0.693	INTRON Fur1
3R	15002561	3R_15002561_SNP [dm3] 3R_19176839_SNP [dm6]	A	T	2.604e^-4	0.693	UPSTREAM CG14282 INTERGENIC
X	19435072	X_19435072_SNP [dm3] X_19541039_SNP [dm6]	T	A	2.605e^-4	0.693	INTRON CG32532
2L	11510627	2L_11510627_SNP [dm3] 2L_11510627_SNP [dm6]	C	A	2.605e^-4	0.693	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509
3R	26216463	3R_26216463_SNP [dm3] 3R_30390741_SNP [dm6]	T	C	2.606e^-4	0.693	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26216468	3R_26216468_SNP [dm3] 3R_30390746_SNP [dm6]	A	G	2.606e^-4	0.693	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26216479	3R_26216479_SNP [dm3] 3R_30390757_SNP [dm6]	G	T	2.606e^-4	0.693	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10807710	3L_10807710_SNP [dm3] 3L_10814610_SNP [dm6]	T	C	2.610e^-4	0.693	UPSTREAM CG42831 INTERGENIC
2R	11044645	2R_11044645_SNP [dm3] 2R_15157140_SNP [dm6]	T	A	2.611e^-4	0.693	INTRON igl
3R	24773227	3R_24773227_SNP [dm3] 3R_28947505_SNP [dm6]	G	A	2.614e^-4	0.693	INTRON CG14521
3L	18630130	3L_18630130_SNP [dm3] 3L_18637030_SNP [dm6]	G	A	2.615e^-4	0.693	INTRON MYPT-75D
3L	18417883	3L_18417883_SNP [dm3] 3L_18424783_SNP [dm6]	T	G	2.618e^-4	0.693	INTERGENIC
2R	9310315	2R_9310315_SNP [dm3] 2R_13422810_SNP [dm6]	A	G	2.620e^-4	0.693	DOWNSTREAM CG30060 INTRON CG42321
3R	9436086	3R_9436086_SNP [dm3] 3R_13610364_SNP [dm6]	G	T	2.621e^-4	0.693	INTERGENIC
3R	25213578	3R_25213578_SNP [dm3] 3R_29387856_SNP [dm6]	T	C	2.623e^-4	0.693	INTRON Ptp99A
3R	23546666	3R_23546666_SNP [dm3] 3R_27720944_SNP [dm6]	T	A	2.642e^-4	0.693	INTERGENIC
3R	15512379	3R_15512379_INS [dm3] 3R_19686657_INS [dm6]	A	AA	2.650e^-4	0.693	UPSTREAM Naam INTRON Naam
3L	19515108	3L_19515108_SNP [dm3] 3L_19522008_SNP [dm6]	C	T	2.651e^-4	0.693	INTRON Cpr76Bc
2L	14977175	2L_14977175_SNP [dm3] 2L_14977175_SNP [dm6]	T	C	2.652e^-4	0.693	INTRON mol
3R	3136965	3R_3136965_SNP [dm3] 3R_7311243_SNP [dm6]	C	G	2.653e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	9746491	3R_9746491_DEL [dm3] 3R_13920769_DEL [dm6]	AA	T	2.655e^-4	0.693	INTERGENIC
2L	3360707	2L_3360707_SNP [dm3] 2L_3360707_SNP [dm6]	T	A	2.658e^-4	0.693	UTR_3_PRIME CG34394
3R	18778421	3R_18778421_SNP [dm3] 3R_22952699_SNP [dm6]	G	A	2.665e^-4	0.693	INTRON klg
2L	3117165	2L_3117165_SNP [dm3] 2L_3117165_SNP [dm6]	A	G	2.668e^-4	0.693	INTRON toc
2R	14551488	2R_14551488_SNP [dm3] 2R_18663983_SNP [dm6]	T	A	2.669e^-4	0.693	DOWNSTREAM CG33136 INTERGENIC
3L	15713165	3L_15713165_SNP [dm3] 3L_15720065_SNP [dm6]	T	A	2.674e^-4	0.693	UTR_3_PRIME CG42570
3L	2575393	3L_2575393_SNP [dm3] 3L_2575393_SNP [dm6]	T	C	2.675e^-4	0.693	INTRON msn
3L	2575395	3L_2575395_SNP [dm3] 3L_2575395_SNP [dm6]	T	C	2.675e^-4	0.693	INTRON msn
2R	16679773	2R_16679773_SNP [dm3] 2R_20792268_SNP [dm6]	G	T	2.676e^-4	0.693	UPSTREAM CG15225 & 1 other INTERGENIC
2L	14370853	2L_14370853_SNP [dm3] 2L_14370853_SNP [dm6]	C	A	2.684e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	19009049	3R_19009049_SNP [dm3] 3R_23183327_SNP [dm6]	A	C	2.685e^-4	0.693	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5678226	3L_5678226_SNP [dm3] 3L_5685126_SNP [dm6]	T	G	2.685e^-4	0.693	INTRON sif
2L	9826629	2L_9826629_SNP [dm3] 2L_9826629_SNP [dm6]	C	T	2.686e^-4	0.693	INTRON nAChRalpha6
3L	600241	3L_600241_SNP [dm3] 3L_600241_SNP [dm6]	T	C	2.686e^-4	0.693	SYNONYMOUS_CODING CG13893	TF binding site mE1_TFBS_inv
X	11565690	X_11565690_SNP [dm3] X_11671657_SNP [dm6]	A	G	2.687e^-4	0.693	SYNONYMOUS_CODING Ptp10D	TF binding site mE1_TFBS_cad
3R	21624469	3R_21624469_SNP [dm3] 3R_25798747_SNP [dm6]	T	C	2.689e^-4	0.693	UPSTREAM CR43847 INTERGENIC
3R	21708628	3R_21708628_DEL [dm3] 3R_25882906_DEL [dm6]	AAA	A	2.689e^-4	0.693	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3L	9543255	3L_9543255_DEL [dm3] 3L_9550155_DEL [dm6]	CTTTTG	A	2.693e^-4	0.693	INTRON CG42673
2R	14406982	2R_14406982_SNP [dm3] 2R_18519477_SNP [dm6]	A	G	2.697e^-4	0.693	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12930842	3L_12930842_INS [dm3] 3L_12937742_INS [dm6]	T	TTT	2.698e^-4	0.693	INTERGENIC
2L	4300475	2L_4300475_SNP [dm3] 2L_4300475_SNP [dm6]	T	G	2.699e^-4	0.693	INTRON tutl
3L	15642665	3L_15642665_SNP [dm3] 3L_15649565_SNP [dm6]	C	T	2.700e^-4	0.693	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
3R	19066092	3R_19066092_SNP [dm3] 3R_23240370_SNP [dm6]	G	A	2.717e^-4	0.693	UPSTREAM CG4467 INTRON CG4467
3L	11957361	3L_11957361_SNP [dm3] 3L_11964261_SNP [dm6]	T	G	2.717e^-4	0.693	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15394027	2R_15394027_SNP [dm3] 2R_19506522_SNP [dm6]	G	C	2.718e^-4	0.693	UPSTREAM tRNA:H:56E INTERGENIC
3L	22384814	3L_22384814_SNP [dm3] 3L_22391714_SNP [dm6]	G	A	2.721e^-4	0.693	INTRON Ten-m
3L	22369935	3L_22369935_SNP [dm3] 3L_22376835_SNP [dm6]	A	T	2.721e^-4	0.693	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4792169	3L_4792169_SNP [dm3] 3L_4792169_SNP [dm6]	A	G	2.723e^-4	0.693	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4359787	X_4359787_SNP [dm3] X_4465754_SNP [dm6]	T	C	2.727e^-4	0.693	INTRON bi & 1 other
X	21090146	X_21090146_SNP [dm3] X_21219119_SNP [dm6]	T	C	2.727e^-4	0.693	DOWNSTREAM CG32523 INTRON CG32521
2L	8242932	2L_8242932_SNP [dm3] 2L_8242932_SNP [dm6]	G	C	2.731e^-4	0.693	SYNONYMOUS_CODING CG14277 DOWNSTREAM CG43057 & 1 other
3R	25962364	3R_25962364_SNP [dm3] 3R_30136642_SNP [dm6]	T	G	2.744e^-4	0.693	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15642651	3L_15642651_SNP [dm3] 3L_15649551_SNP [dm6]	A	G	2.757e^-4	0.693	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
3R	24157281	3R_24157281_SNP [dm3] 3R_28331559_SNP [dm6]	T	A	2.768e^-4	0.693	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11995050	3R_11995050_SNP [dm3] 3R_16169328_SNP [dm6]	A	T	2.769e^-4	0.693	UPSTREAM CR43472 INTRON CG6006	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14976890	2L_14976890_SNP [dm3] 2L_14976890_SNP [dm6]	G	A	2.770e^-4	0.693	SYNONYMOUS_CODING mol
3R	24157294	3R_24157294_SNP [dm3] 3R_28331572_SNP [dm6]	T	A	2.772e^-4	0.693	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18009157	3L_18009157_SNP [dm3] 3L_18016057_SNP [dm6]	A	C	2.773e^-4	0.693	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21738478	3R_21738478_SNP [dm3] 3R_25912756_SNP [dm6]	A	G	2.775e^-4	0.693	SYNONYMOUS_CODING CG42235 INTRON CG42235
3R	24943939	3R_24943939_SNP [dm3] 3R_29118217_SNP [dm6]	G	A	2.780e^-4	0.693	UTR_3_PRIME Atg14 DOWNSTREAM yem	TF binding site BDTNP1_TFBS_dl
3L	11939365	3L_11939365_SNP [dm3] 3L_11946265_SNP [dm6]	C	T	2.788e^-4	0.693	UPSTREAM mir-285 INTERGENIC
3L	1996361	3L_1996361_SNP [dm3] 3L_1996361_SNP [dm6]	G	C	2.790e^-4	0.693	INTERGENIC
3L	12092984	3L_12092984_SNP [dm3] 3L_12099884_SNP [dm6]	T	A	2.805e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21752111	3R_21752111_SNP [dm3] 3R_25926389_SNP [dm6]	T	C	2.810e^-4	0.693	INTRON CCAP-R
3L	19695682	3L_19695682_SNP [dm3] 3L_19702582_SNP [dm6]	A	T	2.810e^-4	0.693	INTRON serp	TF binding site mE1_TFBS_cad
3L	18211865	3L_18211865_SNP [dm3] 3L_18218765_SNP [dm6]	C	T	2.813e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	22250046	3R_22250046_SNP [dm3] 3R_26424324_SNP [dm6]	G	C	2.816e^-4	0.693	DOWNSTREAM CG6503 & 1 other INTERGENIC
2L	10219574	2L_10219574_SNP [dm3] 2L_10219574_SNP [dm6]	A	G	2.816e^-4	0.693	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	15014724	3L_15014724_SNP [dm3] 3L_15021624_SNP [dm6]	T	C	2.819e^-4	0.693	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21186418	X_21186418_SNP [dm3] X_21315391_SNP [dm6]	C	T	2.834e^-4	0.693	UPSTREAM Rpt6 INTRON CG1801
2R	12815078	2R_12815078_SNP [dm3] 2R_16927573_SNP [dm6]	T	A	2.836e^-4	0.693	INTRON Pkc53E
3R	8580726	3R_8580726_SNP [dm3] 3R_12755004_SNP [dm6]	A	T	2.836e^-4	0.693	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14407036	2R_14407036_SNP [dm3] 2R_18519531_SNP [dm6]	G	A	2.837e^-4	0.693	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7127563	3R_7127563_SNP [dm3] 3R_11301841_SNP [dm6]	A	T	2.848e^-4	0.693	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
X	6791257	X_6791257_SNP [dm3] X_6897224_SNP [dm6]	C	T	2.850e^-4	0.693	INTERGENIC
3L	15773868	3L_15773868_SNP [dm3] 3L_15780768_SNP [dm6]	T	C	2.859e^-4	0.693	INTERGENIC
2R	16408196	2R_16408196_SNP [dm3] 2R_20520691_SNP [dm6]	C	T	2.862e^-4	0.693	INTERGENIC
3R	19066161	3R_19066161_SNP [dm3] 3R_23240439_SNP [dm6]	A	G	2.866e^-4	0.693	UPSTREAM CG4467 INTRON CG4467
3R	10143727	3R_10143727_SNP [dm3] 3R_14318005_SNP [dm6]	C	T	2.874e^-4	0.693	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11566056	X_11566056_SNP [dm3] X_11672023_SNP [dm6]	C	T	2.878e^-4	0.693	SPLICE_SITE_REGION Ptp10D INTRON Ptp10D
2R	20821427	2R_20821427_SNP [dm3] 2R_24933904_SNP [dm6]	A	C	2.882e^-4	0.693	INTRON CG30427
2L	11510538	2L_11510538_SNP [dm3] 2L_11510538_SNP [dm6]	G	A	2.886e^-4	0.693	SPLICE_SITE_REGION CG6509 SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509
2L	7823433	2L_7823433_SNP [dm3] 2L_7823433_SNP [dm6]	A	T	2.894e^-4	0.693	INTRON CG7115
X	21174530	X_21174530_MNP [dm3] X_21303503_MNP [dm6]	TGC	AAA	2.896e^-4	0.693	UPSTREAM CG1718 DOWNSTREAM tRNA:CR32520 INTRON CG1718
3L	15392816	3L_15392816_SNP [dm3] 3L_15399716_SNP [dm6]	C	T	2.896e^-4	0.693	INTERGENIC
3R	21752102	3R_21752102_SNP [dm3] 3R_25926380_SNP [dm6]	G	A	2.900e^-4	0.693	INTRON CCAP-R
3R	22784095	3R_22784095_SNP [dm3] 3R_26958373_SNP [dm6]	G	A	2.900e^-4	0.693	UTR_5_PRIME CG6330
3L	3939712	3L_3939712_INS [dm3] 3L_3939712_INS [dm6]	C	CTTG	2.901e^-4	0.693	SPLICE_SITE_REGION CG12766 UPSTREAM CR43916 INTRON CG12766
3L	9672292	3L_9672292_SNP [dm3] 3L_9679192_SNP [dm6]	A	G	2.902e^-4	0.693	UPSTREAM CG16717 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11304595	3L_11304595_SNP [dm3] 3L_11311495_SNP [dm6]	C	T	2.903e^-4	0.693	UPSTREAM CG7573 INTERGENIC
3L	15392830	3L_15392830_SNP [dm3] 3L_15399730_SNP [dm6]	G	T	2.905e^-4	0.693	INTERGENIC
2L	8986559	2L_8986559_SNP [dm3] 2L_8986559_SNP [dm6]	T	C	2.912e^-4	0.693	INTRON rost
2L	8986560	2L_8986560_SNP [dm3] 2L_8986560_SNP [dm6]	C	A	2.912e^-4	0.693	INTRON rost
3L	22426112	3L_22426112_SNP [dm3] 3L_22433012_SNP [dm6]	T	C	2.913e^-4	0.693	INTERGENIC
3R	10092221	3R_10092221_SNP [dm3] 3R_14266499_SNP [dm6]	C	A	2.914e^-4	0.693	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7763438	3L_7763438_SNP [dm3] 3L_7770338_SNP [dm6]	G	T	2.916e^-4	0.693	INTRON Clk	regulatory region REDfly_CRMs
2R	8836061	2R_8836061_SNP [dm3] 2R_12948556_SNP [dm6]	A	T	2.917e^-4	0.693	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17093885	3R_17093885_SNP [dm3] 3R_21268163_SNP [dm6]	A	G	2.918e^-4	0.693	INTRON Rab1	TF binding site BDTNP1_TFBS_dl
2L	19167796	2L_19167796_SNP [dm3] 2L_19167796_SNP [dm6]	G	C	2.922e^-4	0.693	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12031560	3R_12031560_DEL [dm3] 3R_16205838_DEL [dm6]	TACAATTATAAT...	T	2.925e^-4	0.693	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	14177225	3L_14177225_SNP [dm3] 3L_14184125_SNP [dm6]	C	G	2.928e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12031095	3R_12031095_SNP [dm3] 3R_16205373_SNP [dm6]	C	T	2.929e^-4	0.693	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	16129140	3R_16129140_SNP [dm3] 3R_20303418_SNP [dm6]	T	G	2.944e^-4	0.693	UTR_3_PRIME cic DOWNSTREAM CG4367
2R	14313594	2R_14313594_SNP [dm3] 2R_18426089_SNP [dm6]	A	T	2.946e^-4	0.693	UTR_3_PRIME CG5174 UPSTREAM CG12263 DOWNSTREAM CG5174	TF binding site mE1_TFBS_Ubx
2R	13231370	2R_13231370_INS [dm3] 2R_17343865_INS [dm6]	C	CC	2.950e^-4	0.693	INTRON mbl
3R	11220240	3R_11220240_SNP [dm3] 3R_15394518_SNP [dm6]	T	A	2.958e^-4	0.693	INTRON Rbp
2L	7095591	2L_7095591_SNP [dm3] 2L_7095591_SNP [dm6]	T	A	2.958e^-4	0.693	INTERGENIC
3L	11624327	3L_11624327_SNP [dm3] 3L_11631227_SNP [dm6]	G	T	2.966e^-4	0.693	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3R	3753119	3R_3753119_SNP [dm3] 3R_7927397_SNP [dm6]	C	A	2.966e^-4	0.693	INTRON dsx
2R	12875377	2R_12875377_SNP [dm3] 2R_16987872_SNP [dm6]	G	T	2.970e^-4	0.693	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9598520	2L_9598520_DEL [dm3] 2L_9598520_DEL [dm6]	GATG	G	2.975e^-4	0.693	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	9374227	2L_9374227_SNP [dm3] 2L_9374227_SNP [dm6]	C	T	2.979e^-4	0.693	DOWNSTREAM CR43865 INTRON Shawl
X	21176032	X_21176032_SNP [dm3] X_21305005_SNP [dm6]	C	T	2.981e^-4	0.693	UPSTREAM tRNA:CR32520 DOWNSTREAM tRNA:CR32525 INTRON CG1718
2R	9472219	2R_9472219_SNP [dm3] 2R_13584714_SNP [dm6]	C	G	2.982e^-4	0.693	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_zfh1
2L	5594005	2L_5594005_SNP [dm3] 2L_5594005_SNP [dm6]	G	C	2.984e^-4	0.693	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25550131	3R_25550131_SNP [dm3] 3R_29724409_SNP [dm6]	A	T	2.985e^-4	0.693	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	5265862	2L_5265862_SNP [dm3] 2L_5265862_SNP [dm6]	T	C	2.988e^-4	0.693	UTR_3_PRIME Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	19904863	3R_19904863_SNP [dm3] 3R_24079141_SNP [dm6]	A	C	2.990e^-4	0.693	INTRON 4EHP
3L	14476248	3L_14476248_SNP [dm3] 3L_14483148_SNP [dm6]	T	G	2.993e^-4	0.693	INTRON bbg
3R	3895159	3R_3895159_DEL [dm3] 3R_8069437_DEL [dm6]	ATGTCAG	A	2.994e^-4	0.693	INTRON mAChR-B
X	20330148	X_20330148_SNP [dm3] X_20459121_SNP [dm6]	A	C	2.998e^-4	0.693	INTRON CG32506
3R	21617503	3R_21617503_SNP [dm3] 3R_25791781_SNP [dm6]	C	T	2.998e^-4	0.693	DOWNSTREAM CR43632 EXON CR43631
2R	15193490	2R_15193490_SNP [dm3] 2R_19305985_SNP [dm6]	C	T	3.002e^-4	0.693	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17829310	3L_17829310_DEL [dm3] 3L_17836210_DEL [dm6]	TTTTCCGCATGCTAAAATCG...	T	3.006e^-4	0.693	INTRON Grd
3L	17829337	3L_17829337_SNP [dm3] 3L_17836237_SNP [dm6]	T	A	3.006e^-4	0.693	INTRON Grd
2R	14021615	2R_14021615_DEL [dm3] 2R_18134110_DEL [dm6]	TACT	T	3.008e^-4	0.693	SPLICE_SITE_REGION Hsf INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7429732	3L_7429732_SNP [dm3] 3L_7436632_SNP [dm6]	A	C	3.010e^-4	0.693	DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24569985	3R_24569985_SNP [dm3] 3R_28744263_SNP [dm6]	G	A	3.022e^-4	0.693	UTR_5_PRIME AstA-R2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7534517	X_7534517_SNP [dm3] X_7640484_SNP [dm6]	C	T	3.024e^-4	0.693	INTRON ct
2R	9389309	2R_9389309_SNP [dm3] 2R_13501804_SNP [dm6]	A	C	3.024e^-4	0.693	UTR_5_PRIME mars UPSTREAM mars INTRON drk & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15193499	2R_15193499_SNP [dm3] 2R_19305994_SNP [dm6]	G	A	3.029e^-4	0.693	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5064870	3L_5064870_SNP [dm3] 3L_5064870_SNP [dm6]	G	T	3.029e^-4	0.693	INTRON Con
2L	19159442	2L_19159442_SNP [dm3] 2L_19159442_SNP [dm6]	T	G	3.045e^-4	0.694	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
3R	20547182	3R_20547182_SNP [dm3] 3R_24721460_SNP [dm6]	T	A	3.046e^-4	0.694	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23431266	3R_23431266_SNP [dm3] 3R_27605544_SNP [dm6]	C	T	3.050e^-4	0.694	INTRON dsd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17983948	3L_17983948_SNP [dm3] 3L_17990848_SNP [dm6]	T	C	3.054e^-4	0.694	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	11929852	3L_11929852_SNP [dm3] 3L_11936752_SNP [dm6]	A	G	3.058e^-4	0.694	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17093531	3R_17093531_SNP [dm3] 3R_21267809_SNP [dm6]	A	T	3.059e^-4	0.694	INTRON Rab1	TF binding site BDTNP1_TFBS_dl
3L	13284610	3L_13284610_SNP [dm3] 3L_13291510_SNP [dm6]	T	C	3.060e^-4	0.694	EXON CR43912
2R	20727638	2R_20727638_SNP [dm3] 2R_24840115_SNP [dm6]	C	T	3.073e^-4	0.696	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15251358	2R_15251358_SNP [dm3] 2R_19363853_SNP [dm6]	G	T	3.084e^-4	0.696	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
3R	7306310	3R_7306310_SNP [dm3] 3R_11480588_SNP [dm6]	T	C	3.085e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14321585	X_14321585_SNP [dm3] X_14427552_SNP [dm6]	T	C	3.087e^-4	0.696	INTRON dpr8
3L	18140480	3L_18140480_INS [dm3] 3L_18147380_INS [dm6]	C	CATC	3.091e^-4	0.696	INTERGENIC
2R	9409068	2R_9409068_SNP [dm3] 2R_13521563_SNP [dm6]	C	T	3.102e^-4	0.696	UPSTREAM CG13331 INTRON Vmat
3R	14402710	3R_14402710_SNP [dm3] 3R_18576988_SNP [dm6]	T	A	3.110e^-4	0.696	INTRON CG7694 & 1 other
2R	20734759	2R_20734759_SNP [dm3] 2R_24847236_SNP [dm6]	C	A	3.111e^-4	0.696	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	18641616	3L_18641616_SNP [dm3] 3L_18648516_SNP [dm6]	C	G	3.118e^-4	0.696	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5678153	3L_5678153_SNP [dm3] 3L_5685053_SNP [dm6]	A	G	3.122e^-4	0.696	INTRON sif
2L	5655395	2L_5655395_SNP [dm3] 2L_5655395_SNP [dm6]	T	G	3.125e^-4	0.696	INTRON CG31646	TF binding site mE1_TFBS_inv
2R	15004053	2R_15004053_SNP [dm3] 2R_19116548_SNP [dm6]	T	A	3.126e^-4	0.696	INTRON 5-HT1A
3L	683870	3L_683870_SNP [dm3] 3L_683870_SNP [dm6]	T	C	3.129e^-4	0.696	SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	15819446	3L_15819446_SNP [dm3] 3L_15826346_SNP [dm6]	T	C	3.130e^-4	0.696	UTR_5_PRIME Dcp2 UPSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8580678	3R_8580678_SNP [dm3] 3R_12754956_SNP [dm6]	T	C	3.133e^-4	0.696	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	12871670	3L_12871670_SNP [dm3] 3L_12878570_SNP [dm6]	A	C	3.136e^-4	0.696	INTERGENIC
2L	7722136	2L_7722136_SNP [dm3] 2L_7722136_SNP [dm6]	C	T	3.138e^-4	0.696	DOWNSTREAM CG13795 INTRON CG13794
3R	3966280	3R_3966280_SNP [dm3] 3R_8140558_SNP [dm6]	A	T	3.143e^-4	0.696	UPSTREAM tRNA:N5:84F & 3 others DOWNSTREAM tRNA:R2:84Fb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	17739369	X_17739369_SNP [dm3] X_17845336_SNP [dm6]	T	A	3.148e^-4	0.696	UTR_5_PRIME Ucp4A UPSTREAM CG8142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	3.157e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15245948	2L_15245948_SNP [dm3] 2L_15245948_SNP [dm6]	T	C	3.158e^-4	0.696	UTR_5_PRIME ZnT35C INTRON ZnT35C
3R	3086070	3R_3086070_SNP [dm3] 3R_7260348_SNP [dm6]	C	A	3.159e^-4	0.696	INTRON Gld	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22129175	3R_22129175_SNP [dm3] 3R_26303453_SNP [dm6]	A	T	3.161e^-4	0.696	INTERGENIC
3R	11235989	3R_11235989_SNP [dm3] 3R_15410267_SNP [dm6]	T	A	3.170e^-4	0.696	UPSTREAM Atx2 INTRON Atx2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	12442799	3L_12442799_SNP [dm3] 3L_12449699_SNP [dm6]	C	T	3.175e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9747675	3R_9747675_SNP [dm3] 3R_13921953_SNP [dm6]	T	C	3.175e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15368641	3R_15368641_SNP [dm3] 3R_19542919_SNP [dm6]	A	G	3.181e^-4	0.696	INTRON Dys
2R	19376000	2R_19376000_SNP [dm3] 2R_23488477_SNP [dm6]	A	T	3.185e^-4	0.696	INTRON CG43795
3L	15020218	3L_15020218_SNP [dm3] 3L_15027118_SNP [dm6]	A	T	3.185e^-4	0.696	INTRON Sytbeta
3L	1939094	3L_1939094_SNP [dm3] 3L_1939094_SNP [dm6]	A	G	3.189e^-4	0.696	UTR_5_PRIME CG5687 UPSTREAM CG5687 DOWNSTREAM CR44536
3R	18504231	3R_18504231_SNP [dm3] 3R_22678509_SNP [dm6]	A	G	3.191e^-4	0.696	INTRON CG45058	TF binding site mE1_TFBS_cad
X	6542862	X_6542862_SNP [dm3] X_6648829_SNP [dm6]	C	T	3.193e^-4	0.696	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
3R	10346434	3R_10346434_SNP [dm3] 3R_14520712_SNP [dm6]	A	G	3.194e^-4	0.696	UPSTREAM Cyp313a1 INTRON Pde6
3L	17188705	3L_17188705_SNP [dm3] 3L_17195605_SNP [dm6]	T	C	3.198e^-4	0.696	INTRON Rbp6	TF binding site mE1_TFBS_inv
2L	9346111	2L_9346111_SNP [dm3] 2L_9346111_SNP [dm6]	A	T	3.206e^-4	0.696	INTERGENIC
3R	9432479	3R_9432479_DEL [dm3] 3R_13606757_DEL [dm6]	AATAATTTATGTTTGAAACT...	A	3.208e^-4	0.696	DOWNSTREAM CG9759 INTERGENIC
3L	22370714	3L_22370714_SNP [dm3] 3L_22377614_SNP [dm6]	C	T	3.211e^-4	0.696	INTRON Ten-m
2L	19880897	2L_19880897_SNP [dm3] 2L_19880897_SNP [dm6]	T	C	3.212e^-4	0.696	INTRON sick
3L	15642645	3L_15642645_SNP [dm3] 3L_15649545_SNP [dm6]	T	C	3.214e^-4	0.696	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
2R	15193496	2R_15193496_SNP [dm3] 2R_19305991_SNP [dm6]	T	C	3.215e^-4	0.696	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8246800	2L_8246800_INS [dm3] 2L_8246800_INS [dm6]	A	AA	3.229e^-4	0.696	INTRON CG8086
2R	15005527	2R_15005527_SNP [dm3] 2R_19118022_SNP [dm6]	G	A	3.232e^-4	0.696	INTRON 5-HT1A
X	20291789	X_20291789_SNP [dm3] X_20420762_SNP [dm6]	A	C	3.237e^-4	0.696	DOWNSTREAM Pp4-19C INTRON Obp19d	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9313370	3R_9313370_SNP [dm3] 3R_13487648_SNP [dm6]	G	T	3.237e^-4	0.696	INTERGENIC
X	17728769	X_17728769_SNP [dm3] X_17834736_SNP [dm6]	C	T	3.240e^-4	0.696	INTRON CG6398	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	11276635	X_11276635_SNP [dm3] X_11382602_SNP [dm6]	A	G	3.242e^-4	0.696	INTRON dlg1
2L	1620911	2L_1620911_SNP [dm3] 2L_1620911_SNP [dm6]	G	A	3.242e^-4	0.696	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3848060	X_3848060_SNP [dm3] X_3954027_SNP [dm6]	A	G	3.248e^-4	0.696	UTR_3_PRIME Vap-33A
2R	9014531	2R_9014531_SNP [dm3] 2R_13127026_SNP [dm6]	T	C	3.256e^-4	0.696	DOWNSTREAM CG3955 INTERGENIC
2R	10373123	2R_10373123_SNP [dm3] 2R_14485618_SNP [dm6]	C	A	3.261e^-4	0.696	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20215851	2R_20215851_SNP [dm3] 2R_24328328_SNP [dm6]	G	T	3.271e^-4	0.696	UPSTREAM CR44810 INTRON CR44810
3L	10356490	3L_10356490_SNP [dm3] 3L_10363390_SNP [dm6]	G	A	3.272e^-4	0.696	EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11510696	2L_11510696_SNP [dm3] 2L_11510696_SNP [dm6]	G	A	3.274e^-4	0.696	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509	TF binding site mE1_TFBS_cad
X	17545846	X_17545846_SNP [dm3] X_17651813_SNP [dm6]	G	A	3.275e^-4	0.696	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTRON RhoGAPp190	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	9643957	2L_9643957_SNP [dm3] 2L_9643957_SNP [dm6]	C	A	3.276e^-4	0.696	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6675622	2L_6675622_SNP [dm3] 2L_6675622_SNP [dm6]	G	A	3.279e^-4	0.696	SYNONYMOUS_CODING cort DOWNSTREAM CG34310 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21746832	3R_21746832_SNP [dm3] 3R_25921110_SNP [dm6]	C	A	3.298e^-4	0.697	UTR_3_PRIME CG14546 DOWNSTREAM CG42235
3R	21908938	3R_21908938_SNP [dm3] 3R_26083216_SNP [dm6]	C	A	3.307e^-4	0.697	INTRON dys
3R	19066117	3R_19066117_SNP [dm3] 3R_23240395_SNP [dm6]	C	T	3.317e^-4	0.697	UPSTREAM CG4467 INTRON CG4467
2L	9288353	2L_9288353_SNP [dm3] 2L_9288353_SNP [dm6]	A	C	3.327e^-4	0.697	INTRON Ggamma30A
3R	3823908	3R_3823908_SNP [dm3] 3R_7998186_SNP [dm6]	A	G	3.327e^-4	0.697	INTERGENIC
2L	14976898	2L_14976898_SNP [dm3] 2L_14976898_SNP [dm6]	G	A	3.329e^-4	0.697	SYNONYMOUS_CODING mol
3L	16883811	3L_16883811_DEL [dm3] 3L_16890711_DEL [dm6]	ATGTA	A	3.329e^-4	0.697	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19636320	2L_19636320_SNP [dm3] 2L_19636320_SNP [dm6]	A	G	3.330e^-4	0.697	INTRON Lar
3L	2974302	3L_2974302_SNP [dm3] 3L_2974302_SNP [dm6]	C	T	3.346e^-4	0.697	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22135781	3R_22135781_SNP [dm3] 3R_26310059_SNP [dm6]	T	C	3.347e^-4	0.697	INTERGENIC
3R	21742270	3R_21742270_SNP [dm3] 3R_25916548_SNP [dm6]	T	C	3.354e^-4	0.697	SYNONYMOUS_CODING CG42235 INTRON CG42235
3R	8602696	3R_8602696_SNP [dm3] 3R_12776974_SNP [dm6]	C	T	3.356e^-4	0.697	INTRON beat-Vc
3L	21910242	3L_21910242_SNP [dm3] 3L_21917142_SNP [dm6]	C	T	3.367e^-4	0.697	INTRON mub	TF binding site mE1_TFBS_Trl
2R	20743813	2R_20743813_SNP [dm3] 2R_24856290_SNP [dm6]	G	A	3.368e^-4	0.697	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4599885	X_4599885_SNP [dm3] X_4705852_SNP [dm6]	A	G	3.368e^-4	0.697	DOWNSTREAM l_1_G0334 INTRON CG7024
3L	7023540	3L_7023540_SNP [dm3] 3L_7030440_SNP [dm6]	T	A	3.369e^-4	0.697	INTRON Mp
2R	16376688	2R_16376688_SNP [dm3] 2R_20489183_SNP [dm6]	C	A	3.370e^-4	0.697	INTERGENIC
3R	23610495	3R_23610495_SNP [dm3] 3R_27784773_SNP [dm6]	T	G	3.371e^-4	0.697	INTRON CG34353
X	14635431	X_14635431_DEL [dm3] X_14741398_DEL [dm6]	GTTGGGCTA	CG	3.372e^-4	0.697	INTRON NetB	TF binding site BDTNP1_TFBS_twi
2L	19242140	2L_19242140_SNP [dm3] 2L_19242140_SNP [dm6]	C	T	3.372e^-4	0.697	INTERGENIC
2L	6675700	2L_6675700_SNP [dm3] 2L_6675700_SNP [dm6]	A	C	3.372e^-4	0.697	SPLICE_SITE_REGION cort SYNONYMOUS_CODING cort DOWNSTREAM CG34310 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5842463	2R_5842463_SNP [dm3] 2R_9954958_SNP [dm6]	G	C	3.374e^-4	0.697	INTRON Mef2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24083637	3R_24083637_SNP [dm3] 3R_28257915_SNP [dm6]	T	A	3.375e^-4	0.697	INTERGENIC
X	12148276	X_12148276_SNP [dm3] X_12254243_SNP [dm6]	C	T	3.378e^-4	0.697	INTRON Ten-a
2R	15096125	2R_15096125_SNP [dm3] 2R_19208620_SNP [dm6]	T	G	3.383e^-4	0.697	INTRON hppy
3L	8595159	3L_8595159_SNP [dm3] 3L_8602059_SNP [dm6]	T	G	3.388e^-4	0.697	DOWNSTREAM CG5989 & 2 others INTRON RpL14	TF binding site mE1_TFBS_sens
3L	14190548	3L_14190548_SNP [dm3] 3L_14197448_SNP [dm6]	A	C	3.390e^-4	0.697	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12031478	3R_12031478_SNP [dm3] 3R_16205756_SNP [dm6]	A	G	3.412e^-4	0.697	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8671063	3R_8671063_SNP [dm3] 3R_12845341_SNP [dm6]	T	C	3.416e^-4	0.697	INTRON beat-Va
X	17546060	X_17546060_SNP [dm3] X_17652027_SNP [dm6]	C	A	3.421e^-4	0.697	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTRON RhoGAPp190	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	8875722	2R_8875722_SNP [dm3] 2R_12988217_SNP [dm6]	T	G	3.421e^-4	0.697	INTERGENIC
2R	3471154	2R_3471154_SNP [dm3] 2R_7583649_SNP [dm6]	A	G	3.423e^-4	0.697	INTRON blow
2L	8791522	2L_8791522_SNP [dm3] 2L_8791522_SNP [dm6]	T	C	3.424e^-4	0.697	INTERGENIC
2R	8835958	2R_8835958_SNP [dm3] 2R_12948453_SNP [dm6]	G	T	3.425e^-4	0.697	UTR_3_PRIME CG44251	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9602508	2R_9602508_SNP [dm3] 2R_13715003_SNP [dm6]	A	G	3.427e^-4	0.697	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9404267	2R_9404267_SNP [dm3] 2R_13516762_SNP [dm6]	A	G	3.433e^-4	0.697	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad
X	21194292	X_21194292_INS [dm3] X_21323265_INS [dm6]	T	TT	3.437e^-4	0.697	UTR_5_PRIME Dd UPSTREAM CG1486	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
3R	19064137	3R_19064137_SNP [dm3] 3R_23238415_SNP [dm6]	T	C	3.440e^-4	0.697	INTRON CG4467
2L	4473654	2L_4473654_SNP [dm3] 2L_4473654_SNP [dm6]	A	C	3.444e^-4	0.697	UPSTREAM ine INTRON ine
2L	10363991	2L_10363991_SNP [dm3] 2L_10363991_SNP [dm6]	A	T	3.445e^-4	0.697	UTR_3_PRIME pim UPSTREAM lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24838534	3R_24838534_SNP [dm3] 3R_29012812_SNP [dm6]	A	T	3.450e^-4	0.697	INTRON wat
2L	5265889	2L_5265889_SNP [dm3] 2L_5265889_SNP [dm6]	A	T	3.452e^-4	0.697	UTR_3_PRIME Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	14444440	3R_14444440_SNP [dm3] 3R_18618718_SNP [dm6]	A	C	3.453e^-4	0.697	INTRON qin & 1 other
3R	24475816	3R_24475816_SNP [dm3] 3R_28650094_SNP [dm6]	G	A	3.453e^-4	0.697	UTR_3_PRIME CG31050
2R	9410872	2R_9410872_SNP [dm3] 2R_13523367_SNP [dm6]	T	G	3.464e^-4	0.697	UTR_3_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
3L	17166751	3L_17166751_SNP [dm3] 3L_17173651_SNP [dm6]	G	T	3.476e^-4	0.697	INTRON Rbp6
3R	8560605	3R_8560605_INS [dm3] 3R_12734883_INS [dm6]	A	AGCGTAA	3.486e^-4	0.697	INTERGENIC
3R	10739900	3R_10739900_SNP [dm3] 3R_14914178_SNP [dm6]	A	G	3.489e^-4	0.697	INTERGENIC
3R	18869729	3R_18869729_SNP [dm3] 3R_23044007_SNP [dm6]	C	T	3.490e^-4	0.697	SYNONYMOUS_CODING CG13837 DOWNSTREAM CG17121	TF binding site BDTNP1_TFBS_twi
2L	16489901	2L_16489901_SNP [dm3] 2L_16489901_SNP [dm6]	C	T	3.491e^-4	0.697	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site mE1_TFBS_HSA
3R	5018728	3R_5018728_SNP [dm3] 3R_9193006_SNP [dm6]	C	T	3.492e^-4	0.697	INTRON pum
2R	17985026	2R_17985026_SNP [dm3] 2R_22097521_SNP [dm6]	G	C	3.493e^-4	0.697	INTRON CG11073	TF binding site mE1_TFBS_HSA
3R	3120964	3R_3120964_SNP [dm3] 3R_7295242_SNP [dm6]	C	T	3.494e^-4	0.697	INTRON rn
2L	2757513	2L_2757513_SNP [dm3] 2L_2757513_SNP [dm6]	T	C	3.503e^-4	0.697	UTR_3_PRIME Bacc DOWNSTREAM Bacc & 3 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	11422669	2R_11422669_SNP [dm3] 2R_15535164_SNP [dm6]	A	C	3.505e^-4	0.697	SPLICE_SITE_REGION CG30471 INTRON CG30471
2R	13227125	2R_13227125_SNP [dm3] 2R_17339620_SNP [dm6]	A	T	3.512e^-4	0.697	INTRON mbl
3R	9747677	3R_9747677_SNP [dm3] 3R_13921955_SNP [dm6]	T	C	3.513e^-4	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20931768	3R_20931768_SNP [dm3] 3R_25106046_SNP [dm6]	A	G	3.515e^-4	0.697	INTRON CG34027
2L	18791684	2L_18791684_SNP [dm3] 2L_18791684_SNP [dm6]	G	A	3.518e^-4	0.697	INTRON ham	transposable element FlyBase
2L	7414514	2L_7414514_SNP [dm3] 2L_7414514_SNP [dm6]	A	G	3.518e^-4	0.697	SYNONYMOUS_CODING chm
3R	1100638	3R_1100638_SNP [dm3] 3R_5274916_SNP [dm6]	A	G	3.519e^-4	0.697	DOWNSTREAM CG31538 INTRON mtd
X	6933249	X_6933249_SNP [dm3] X_7039216_SNP [dm6]	A	G	3.522e^-4	0.697	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10543700	3L_10543700_SNP [dm3] 3L_10550600_SNP [dm6]	A	G	3.523e^-4	0.697	INTRON A2bp1
2R	15193193	2R_15193193_SNP [dm3] 2R_19305688_SNP [dm6]	G	A	3.536e^-4	0.697	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
X	16524230	X_16524230_SNP [dm3] X_16630197_SNP [dm6]	A	G	3.541e^-4	0.697	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18299154	2R_18299154_SNP [dm3] 2R_22411649_SNP [dm6]	G	A	3.543e^-4	0.697	UPSTREAM Mes4 & 1 other DOWNSTREAM qkr58E-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	21746846	3R_21746846_SNP [dm3] 3R_25921124_SNP [dm6]	A	G	3.546e^-4	0.697	UTR_3_PRIME CG14546 DOWNSTREAM CG42235
3L	14404192	3L_14404192_SNP [dm3] 3L_14411092_SNP [dm6]	G	A	3.551e^-4	0.697	UTR_5_PRIME CG3919 UPSTREAM CR45233	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9313361	3R_9313361_SNP [dm3] 3R_13487639_SNP [dm6]	A	C	3.560e^-4	0.697	INTERGENIC
3L	15014701	3L_15014701_INS [dm3] 3L_15021601_INS [dm6]	A	AGA	3.561e^-4	0.697	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10420853	3L_10420853_SNP [dm3] 3L_10427753_SNP [dm6]	C	T	3.563e^-4	0.697	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	679819	3L_679819_SNP [dm3] 3L_679819_SNP [dm6]	T	G	3.564e^-4	0.697	UTR_5_PRIME CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18369546	2R_18369546_SNP [dm3] 2R_22482041_SNP [dm6]	A	C	3.566e^-4	0.697	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6791264	X_6791264_SNP [dm3] X_6897231_SNP [dm6]	A	T	3.566e^-4	0.697	INTERGENIC
X	20436532	X_20436532_SNP [dm3] X_20565505_SNP [dm6]	C	G	3.568e^-4	0.697	NON_SYNONYMOUS_CODING RunxB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17309755	2R_17309755_SNP [dm3] 2R_21422250_SNP [dm6]	G	T	3.572e^-4	0.697	INTRON Sdc
3L	4633740	3L_4633740_SNP [dm3] 3L_4633740_SNP [dm6]	C	T	3.573e^-4	0.697	DOWNSTREAM CG13716 INTRON axo
2R	17837042	2R_17837042_SNP [dm3] 2R_21949537_SNP [dm6]	A	G	3.577e^-4	0.697	INTERGENIC
3L	9496639	3L_9496639_SNP [dm3] 3L_9503539_SNP [dm6]	A	G	3.580e^-4	0.697	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1997143	3L_1997143_SNP [dm3] 3L_1997143_SNP [dm6]	A	T	3.587e^-4	0.697	INTERGENIC
X	6315773	X_6315773_SNP [dm3] X_6421740_SNP [dm6]	C	A	3.587e^-4	0.697	INTERGENIC
X	13823848	X_13823848_SNP [dm3] X_13929815_SNP [dm6]	A	T	3.593e^-4	0.697	INTRON mamo
3L	18612182	3L_18612182_SNP [dm3] 3L_18619082_SNP [dm6]	A	T	3.607e^-4	0.697	UTR_3_PRIME not DOWNSTREAM tRNA:CR32200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	8479873	3R_8479873_SNP [dm3] 3R_12654151_SNP [dm6]	C	A	3.609e^-4	0.697	UPSTREAM CG6225 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19686352	X_19686352_SNP [dm3] X_19792319_SNP [dm6]	C	T	3.612e^-4	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15005530	2R_15005530_SNP [dm3] 2R_19118025_SNP [dm6]	C	T	3.615e^-4	0.697	INTRON 5-HT1A
3R	18767370	3R_18767370_INS [dm3] 3R_22941648_INS [dm6]	C	CCGCTTATTAGGCGAACATG...	3.626e^-4	0.697	INTRON klg
X	19435242	X_19435242_DEL [dm3] X_19541209_DEL [dm6]	TT	T	3.630e^-4	0.697	INTRON CG32532
X	12057314	X_12057314_SNP [dm3] X_12163281_SNP [dm6]	C	T	3.631e^-4	0.697	INTRON Ten-a
2R	9696422	2R_9696422_SNP [dm3] 2R_13808917_SNP [dm6]	A	C	3.633e^-4	0.697	INTRON stj
2L	11324221	2L_11324221_SNP [dm3] 2L_11324221_SNP [dm6]	T	C	3.635e^-4	0.697	INTERGENIC
2L	7529952	2L_7529952_SNP [dm3] 2L_7529952_SNP [dm6]	C	T	3.644e^-4	0.697	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26029240	3R_26029240_SNP [dm3] 3R_30203518_SNP [dm6]	C	A	3.644e^-4	0.697	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3116867	2L_3116867_DEL [dm3] 2L_3116867_DEL [dm6]	GGGAAAAACTCAAGAAGA...	G	3.649e^-4	0.697	INTRON toc
3L	16415800	3L_16415800_DEL [dm3] 3L_16422700_DEL [dm6]	AATC	A	3.660e^-4	0.697	DOWNSTREAM dsx-c73A INTRON CG33158
3R	15420636	3R_15420636_SNP [dm3] 3R_19594914_SNP [dm6]	T	G	3.663e^-4	0.697	UTR_3_PRIME Dys
X	8340605	X_8340605_SNP [dm3] X_8446572_SNP [dm6]	G	T	3.668e^-4	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22264413	3L_22264413_SNP [dm3] 3L_22271313_SNP [dm6]	C	T	3.672e^-4	0.697	INTRON Csp
3R	24659620	3R_24659620_SNP [dm3] 3R_28833898_SNP [dm6]	T	G	3.672e^-4	0.697	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	3.673e^-4	0.697	INTRON mAChR-B
3R	19066142	3R_19066142_SNP [dm3] 3R_23240420_SNP [dm6]	A	G	3.675e^-4	0.697	UPSTREAM CG4467 INTRON CG4467
3L	7577933	3L_7577933_SNP [dm3] 3L_7584833_SNP [dm6]	C	T	3.678e^-4	0.697	SYNONYMOUS_CODING CG14838
3R	3891824	3R_3891824_SNP [dm3] 3R_8066102_SNP [dm6]	C	G	3.684e^-4	0.697	INTRON mAChR-B
3R	26610383	3R_26610383_SNP [dm3] 3R_30784661_SNP [dm6]	T	G	3.690e^-4	0.697	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15702486	2R_15702486_SNP [dm3] 2R_19814981_SNP [dm6]	T	C	3.695e^-4	0.697	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
X	21188015	X_21188015_SNP [dm3] X_21316988_SNP [dm6]	C	A	3.696e^-4	0.697	SYNONYMOUS_CODING Rpt6 DOWNSTREAM CG33713 & 1 other INTRON CG1801	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10885821	3L_10885821_SNP [dm3] 3L_10892721_SNP [dm6]	T	A	3.697e^-4	0.697	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
2L	5265742	2L_5265742_SNP [dm3] 2L_5265742_SNP [dm6]	C	T	3.700e^-4	0.697	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	8776330	X_8776330_SNP [dm3] X_8882297_SNP [dm6]	T	C	3.707e^-4	0.697	UPSTREAM Moe INTRON Moe
2R	13115789	2R_13115789_SNP [dm3] 2R_17228284_SNP [dm6]	C	T	3.711e^-4	0.697	INTRON mbl
2L	15883713	2L_15883713_SNP [dm3] 2L_15883713_SNP [dm6]	T	A	3.713e^-4	0.697	UPSTREAM CG44475 INTERGENIC
2R	8156780	2R_8156780_SNP [dm3] 2R_12269275_SNP [dm6]	A	G	3.714e^-4	0.697	SYNONYMOUS_CODING Cam
3R	24824527	3R_24824527_SNP [dm3] 3R_28998805_SNP [dm6]	T	C	3.716e^-4	0.697	INTRON wat
2L	6018285	2L_6018285_SNP [dm3] 2L_6018285_SNP [dm6]	G	T	3.719e^-4	0.697	INTRON H2.0
3R	18613311	3R_18613311_SNP [dm3] 3R_22787589_SNP [dm6]	C	A	3.721e^-4	0.697	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6801751	X_6801751_SNP [dm3] X_6907718_SNP [dm6]	G	C	3.725e^-4	0.697	UPSTREAM CG14431 INTERGENIC
2L	19163532	2L_19163532_SNP [dm3] 2L_19163532_SNP [dm6]	C	T	3.731e^-4	0.697	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.157e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08180
In_2R_NS	0.02606

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1980 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	15392388	3L_15392388_SNP [dm3] 3L_15399288_SNP [dm6]	T	A	1.040e^-6	0.908	INTERGENIC
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	1.619e^-6	0.908	INTRON AdipoR
2R	8439063	2R_8439063_SNP [dm3] 2R_12551558_SNP [dm6]	A	G	1.804e^-6	0.908	INTRON fra
3R	18371244	3R_18371244_SNP [dm3] 3R_22545522_SNP [dm6]	C	A	4.739e^-6	0.908	INTRON AdipoR
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	4.945e^-6	0.908	INTRON AdipoR
2R	6374645	2R_6374645_SNP [dm3] 2R_10487140_SNP [dm6]	C	T	5.937e^-6	0.908	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	19138652	2R_19138652_SNP [dm3] 2R_23251129_SNP [dm6]	T	A	6.910e^-6	0.908	INTERGENIC
2L	8238525	2L_8238525_SNP [dm3] 2L_8238525_SNP [dm6]	C	G	7.033e^-6	0.908	INTRON Pvr
X	12781766	X_12781766_SNP [dm3] X_12887733_SNP [dm6]	A	C	7.315e^-6	0.908	INTRON Pde9
X	11834451	X_11834451_SNP [dm3] X_11940418_SNP [dm6]	A	T	8.037e^-6	0.908	INTRON cac
X	19874256	X_19874256_SNP [dm3] X_19980223_SNP [dm6]	A	G	9.400e^-6	0.908	INTERGENIC
X	6543405	X_6543405_SNP [dm3] X_6649372_SNP [dm6]	T	C	9.685e^-6	0.908	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20216899	2R_20216899_SNP [dm3] 2R_24329376_SNP [dm6]	G	A	1.038e^-5	0.908	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3R	18371243	3R_18371243_SNP [dm3] 3R_22545521_SNP [dm6]	A	C	1.135e^-5	0.908	INTRON AdipoR
2L	2794005	2L_2794005_SNP [dm3] 2L_2794005_SNP [dm6]	A	G	1.173e^-5	0.908	INTRON Syt1
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	1.177e^-5	0.908	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
X	6543399	X_6543399_SNP [dm3] X_6649366_SNP [dm6]	G	C	1.222e^-5	0.908	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8443057	2R_8443057_SNP [dm3] 2R_12555552_SNP [dm6]	T	A	1.258e^-5	0.908	INTRON fra
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	1.375e^-5	0.908	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
3R	22245397	3R_22245397_SNP [dm3] 3R_26419675_SNP [dm6]	C	G	1.399e^-5	0.908	INTERGENIC
3R	18084228	3R_18084228_SNP [dm3] 3R_22258506_SNP [dm6]	G	A	1.536e^-5	0.908	INTRON SKIP
2L	16440636	2L_16440636_SNP [dm3] 2L_16440636_SNP [dm6]	A	T	1.565e^-5	0.908	INTRON CG5888
2R	16909203	2R_16909203_SNP [dm3] 2R_21021698_SNP [dm6]	A	T	1.615e^-5	0.908	INTRON RIC-3
3L	2159287	3L_2159287_SNP [dm3] 3L_2159287_SNP [dm6]	T	C	1.959e^-5	0.908	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1983531	3R_1983531_SNP [dm3] 3R_6157809_SNP [dm6]	T	A	1.974e^-5	0.908	UPSTREAM CG31559 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19009096	3R_19009096_SNP [dm3] 3R_23183374_SNP [dm6]	T	C	2.028e^-5	0.908	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18415857	X_18415857_SNP [dm3] X_18521824_SNP [dm6]	C	T	2.040e^-5	0.908	NON_SYNONYMOUS_CODING CG6481 INTRON Bx	TF binding site mE1_TFBS_sens
3L	10542142	3L_10542142_SNP [dm3] 3L_10549042_SNP [dm6]	T	C	2.056e^-5	0.908	INTRON A2bp1
X	6542862	X_6542862_SNP [dm3] X_6648829_SNP [dm6]	C	T	2.084e^-5	0.908	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
2R	6740195	2R_6740195_SNP [dm3] 2R_10852690_SNP [dm6]	T	C	2.115e^-5	0.908	UPSTREAM CR45136 INTRON CG30015
X	18195900	X_18195900_DEL [dm3] X_18301867_DEL [dm6]	TT	T	2.360e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1517084	3L_1517084_SNP [dm3] 3L_1517084_SNP [dm6]	A	G	2.375e^-5	0.908	UTR_5_PRIME cue UPSTREAM Psa INTRON Psa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4000944	3L_4000944_SNP [dm3] 3L_4000944_SNP [dm6]	T	A	2.552e^-5	0.908	INTERGENIC
3R	13747232	3R_13747232_SNP [dm3] 3R_17921510_SNP [dm6]	G	T	2.603e^-5	0.908	INTRON cpo
3R	13747429	3R_13747429_SNP [dm3] 3R_17921707_SNP [dm6]	A	C	2.685e^-5	0.908	INTRON cpo
2L	15763051	2L_15763051_INS [dm3] 2L_15763051_INS [dm6]	A	AA	2.738e^-5	0.908	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16440742	2L_16440742_SNP [dm3] 2L_16440742_SNP [dm6]	A	C	2.849e^-5	0.908	INTRON CG5888
3L	2567011	3L_2567011_SNP [dm3] 3L_2567011_SNP [dm6]	A	T	2.861e^-5	0.908	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21500860	3L_21500860_SNP [dm3] 3L_21507760_SNP [dm6]	C	T	2.960e^-5	0.908	UPSTREAM M6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	8803768	2R_8803768_SNP [dm3] 2R_12916263_SNP [dm6]	G	C	2.993e^-5	0.908	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25909583	3R_25909583_INS [dm3] 3R_30083861_INS [dm6]	T	TTT	3.050e^-5	0.908	INTRON sima	TF binding site mE1_TFBS_Trl
3R	15006339	3R_15006339_SNP [dm3] 3R_19180617_SNP [dm6]	C	T	3.191e^-5	0.908	UPSTREAM CG31475 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
X	12781737	X_12781737_SNP [dm3] X_12887704_SNP [dm6]	A	T	3.204e^-5	0.908	INTRON Pde9
X	7882433	X_7882433_SNP [dm3] X_7988400_SNP [dm6]	T	C	3.226e^-5	0.908	INTERGENIC
X	15317694	X_15317694_SNP [dm3] X_15423661_SNP [dm6]	C	T	3.246e^-5	0.908	INTRON Cngl
3R	19009049	3R_19009049_SNP [dm3] 3R_23183327_SNP [dm6]	A	C	3.361e^-5	0.908	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14628532	2L_14628532_SNP [dm3] 2L_14628532_SNP [dm6]	A	T	3.372e^-5	0.908	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19009079	3R_19009079_SNP [dm3] 3R_23183357_SNP [dm6]	T	C	3.465e^-5	0.908	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14094622	3L_14094622_SNP [dm3] 3L_14101522_SNP [dm6]	A	G	3.584e^-5	0.908	INTERGENIC
3R	19009084	3R_19009084_SNP [dm3] 3R_23183362_SNP [dm6]	G	A	3.600e^-5	0.908	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11220628	3L_11220628_SNP [dm3] 3L_11227528_SNP [dm6]	C	A	3.645e^-5	0.908	INTRON CG42671
2R	16546477	2R_16546477_SNP [dm3] 2R_20658972_SNP [dm6]	C	T	3.686e^-5	0.908	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20943195	3R_20943195_DEL [dm3] 3R_25117473_DEL [dm6]	TTGT	T	3.686e^-5	0.908	UTR_3_PRIME CG31510 INTRON CG31108
3L	17168689	3L_17168689_SNP [dm3] 3L_17175589_SNP [dm6]	G	C	3.741e^-5	0.908	INTRON Rbp6
3L	8408129	3L_8408129_SNP [dm3] 3L_8415029_SNP [dm6]	G	A	3.758e^-5	0.908	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm & 1 other
X	14091591	X_14091591_SNP [dm3] X_14197558_SNP [dm6]	T	G	3.788e^-5	0.908	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20631117	2L_20631117_SNP [dm3] 2L_20631117_SNP [dm6]	C	T	3.817e^-5	0.908	INTERGENIC
2L	4007581	2L_4007581_SNP [dm3] 2L_4007581_SNP [dm6]	G	A	3.874e^-5	0.908	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2R	9686512	2R_9686512_SNP [dm3] 2R_13799007_SNP [dm6]	C	T	3.887e^-5	0.908	INTRON Cpr50Cb
X	11269997	X_11269997_SNP [dm3] X_11375964_SNP [dm6]	G	C	3.916e^-5	0.908	SYNONYMOUS_CODING dlg1 INTRON dlg1
2R	12389480	2R_12389480_SNP [dm3] 2R_16501975_SNP [dm6]	T	C	3.938e^-5	0.908	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3R	7166656	3R_7166656_SNP [dm3] 3R_11340934_SNP [dm6]	A	C	4.007e^-5	0.908	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21500812	3L_21500812_SNP [dm3] 3L_21507712_SNP [dm6]	A	T	4.111e^-5	0.908	UPSTREAM M6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	17403615	3L_17403615_DEL [dm3] 3L_17410515_DEL [dm6]	AA	A	4.126e^-5	0.908	INTRON blot
2R	16545561	2R_16545561_INS [dm3] 2R_20658056_INS [dm6]	T	TT	4.172e^-5	0.908	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
3L	18203808	3L_18203808_SNP [dm3] 3L_18210708_SNP [dm6]	A	G	4.190e^-5	0.908	INTERGENIC
3R	7592851	3R_7592851_INS [dm3] 3R_11767129_INS [dm6]	G	GGAA	4.246e^-5	0.908	UTR_3_PRIME l_3_neo38
2R	12534247	2R_12534247_SNP [dm3] 2R_16646742_SNP [dm6]	C	T	4.305e^-5	0.908	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4019834	3R_4019834_SNP [dm3] 3R_8194112_SNP [dm6]	C	T	4.372e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
X	18192740	X_18192740_SNP [dm3] X_18298707_SNP [dm6]	A	T	4.428e^-5	0.908	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19874254	X_19874254_SNP [dm3] X_19980221_SNP [dm6]	A	G	4.471e^-5	0.908	INTERGENIC
3L	16648748	3L_16648748_SNP [dm3] 3L_16655648_SNP [dm6]	A	T	4.473e^-5	0.908	INTRON Baldspot
2R	17978020	2R_17978020_SNP [dm3] 2R_22090515_SNP [dm6]	G	T	4.507e^-5	0.908	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163 & 1 other
X	12781751	X_12781751_SNP [dm3] X_12887718_SNP [dm6]	T	G	4.593e^-5	0.908	INTRON Pde9
3R	13747223	3R_13747223_SNP [dm3] 3R_17921501_SNP [dm6]	G	A	4.654e^-5	0.908	INTRON cpo
3L	11179684	3L_11179684_SNP [dm3] 3L_11186584_SNP [dm6]	T	G	4.744e^-5	0.908	INTRON GlcAT-P
3L	2349997	3L_2349997_SNP [dm3] 3L_2349997_SNP [dm6]	A	C	4.751e^-5	0.908	INTERGENIC
X	7439736	X_7439736_SNP [dm3] X_7545703_SNP [dm6]	C	T	4.821e^-5	0.908	INTRON CG32719
X	21090146	X_21090146_SNP [dm3] X_21219119_SNP [dm6]	T	C	4.824e^-5	0.908	DOWNSTREAM CG32523 INTRON CG32521
2R	19349615	2R_19349615_SNP [dm3] 2R_23462092_SNP [dm6]	C	T	5.002e^-5	0.908	INTRON CG43795	TF binding site mE1_TFBS_inv
3R	20548721	3R_20548721_SNP [dm3] 3R_24722999_SNP [dm6]	C	A	5.031e^-5	0.908	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
2L	4332832	2L_4332832_SNP [dm3] 2L_4332832_SNP [dm6]	C	T	5.038e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	4179678	2L_4179678_SNP [dm3] 2L_4179678_SNP [dm6]	T	A	5.083e^-5	0.908	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	11268348	X_11268348_DEL [dm3] X_11374315_DEL [dm6]	GC	G	5.146e^-5	0.908	UTR_5_PRIME dlg1
3R	18839797	3R_18839797_SNP [dm3] 3R_23014075_SNP [dm6]	A	C	5.160e^-5	0.908	INTRON CG6688	TF binding site mE1_TFBS_chinmo
2R	19351627	2R_19351627_SNP [dm3] 2R_23464104_SNP [dm6]	C	A	5.251e^-5	0.908	INTRON CG43795
3L	13684084	3L_13684084_SNP [dm3] 3L_13690984_SNP [dm6]	T	C	5.264e^-5	0.908	INTRON bru-3
3L	7754146	3L_7754146_SNP [dm3] 3L_7761046_SNP [dm6]	A	G	5.321e^-5	0.908	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
3L	10231324	3L_10231324_SNP [dm3] 3L_10238224_SNP [dm6]	C	G	5.478e^-5	0.908	INTERGENIC
X	2282517	X_2282517_SNP [dm3] X_2388484_SNP [dm6]	G	C	5.526e^-5	0.908	UPSTREAM PsGEF INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13747447	3R_13747447_SNP [dm3] 3R_17921725_SNP [dm6]	C	T	5.579e^-5	0.908	INTRON cpo
3R	3990515	3R_3990515_SNP [dm3] 3R_8164793_SNP [dm6]	G	T	5.596e^-5	0.908	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15763292	2L_15763292_SNP [dm3] 2L_15763292_SNP [dm6]	T	C	5.620e^-5	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18839793	3R_18839793_SNP [dm3] 3R_23014071_SNP [dm6]	C	A	5.714e^-5	0.908	INTRON CG6688	TF binding site mE1_TFBS_chinmo
X	12781763	X_12781763_SNP [dm3] X_12887730_SNP [dm6]	G	C	5.717e^-5	0.908	INTRON Pde9
2L	21803039	2L_21803039_SNP [dm3] 2L_21803039_SNP [dm6]	T	A	5.734e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	17375670	3R_17375670_SNP [dm3] 3R_21549948_SNP [dm6]	C	T	5.776e^-5	0.908	INTRON slou
2L	517196	2L_517196_INS [dm3] 2L_517196_INS [dm6]	A	ACACACACACCAGCAAGCA...	5.817e^-5	0.908	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	4273729	X_4273729_SNP [dm3] X_4379696_SNP [dm6]	C	T	5.888e^-5	0.908	INTERGENIC
2R	6861820	2R_6861820_SNP [dm3] 2R_10974315_SNP [dm6]	T	A	5.912e^-5	0.908	INTERGENIC
3L	7754492	3L_7754492_SNP [dm3] 3L_7761392_SNP [dm6]	C	T	5.979e^-5	0.908	UTR_5_PRIME Hn INTRON Hn
X	12865951	X_12865951_SNP [dm3] X_12971918_SNP [dm6]	A	T	6.064e^-5	0.908	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	5449454	2L_5449454_SNP [dm3] 2L_5449454_SNP [dm6]	T	C	6.145e^-5	0.908	INTERGENIC
2R	8798268	2R_8798268_DEL [dm3] 2R_12910763_DEL [dm6]	ATTGG	A	6.173e^-5	0.908	INTERGENIC
2L	9379108	2L_9379108_DEL [dm3] 2L_9379108_DEL [dm6]	GG	T	6.213e^-5	0.908	INTRON Shawl
2R	17977931	2R_17977931_DEL [dm3] 2R_22090426_DEL [dm6]	CGTATTTT	A	6.243e^-5	0.908	FRAME_SHIFT CG43393 SPLICE_SITE_DONOR CG43393 SPLICE_SITE_REGION CG43393 DOWNSTREAM CG44163 INTRON CG43393
X	18194051	X_18194051_SNP [dm3] X_18300018_SNP [dm6]	G	A	6.324e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_Kr mE1_TFBS_sbb
3L	18808705	3L_18808705_SNP [dm3] 3L_18815605_SNP [dm6]	T	A	6.422e^-5	0.908	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15532353	X_15532353_SNP [dm3] X_15638320_SNP [dm6]	T	G	6.451e^-5	0.908	INTERGENIC
3L	15871762	3L_15871762_SNP [dm3] 3L_15878662_SNP [dm6]	G	T	6.527e^-5	0.908	INTRON pHCl
2R	9352516	2R_9352516_SNP [dm3] 2R_13465011_SNP [dm6]	G	T	6.532e^-5	0.908	INTRON arr	TF binding site mE1_TFBS_inv
X	3734982	X_3734982_SNP [dm3] X_3840949_SNP [dm6]	G	T	6.533e^-5	0.908	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3R	3990509	3R_3990509_DEL [dm3] 3R_8164787_DEL [dm6]	TCACC	T	6.537e^-5	0.908	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10092221	3R_10092221_SNP [dm3] 3R_14266499_SNP [dm6]	C	A	6.643e^-5	0.908	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23003428	3R_23003428_SNP [dm3] 3R_27177706_SNP [dm6]	A	C	6.702e^-5	0.908	INTRON Ser	TF binding site mE1_TFBS_cad
3R	13202558	3R_13202558_SNP [dm3] 3R_17376836_SNP [dm6]	T	C	6.738e^-5	0.908	SYNONYMOUS_CODING Brf
X	19874495	X_19874495_SNP [dm3] X_19980462_SNP [dm6]	C	G	6.745e^-5	0.908	INTERGENIC
X	793801	X_793801_DEL [dm3] X_899768_DEL [dm6]	AAAT	A	6.835e^-5	0.908	UPSTREAM CG43867 INTRON CG43867	TF binding site mE1_TFBS_sens
3L	9388589	3L_9388589_SNP [dm3] 3L_9395489_SNP [dm6]	G	T	6.855e^-5	0.908	INTRON CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	24475816	3R_24475816_SNP [dm3] 3R_28650094_SNP [dm6]	G	A	6.923e^-5	0.908	UTR_3_PRIME CG31050
3L	21501348	3L_21501348_DEL [dm3] 3L_21508248_DEL [dm6]	CTG	C	6.936e^-5	0.908	UTR_5_PRIME M6 UPSTREAM Glg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15864195	3L_15864195_SNP [dm3] 3L_15871095_SNP [dm6]	A	G	7.014e^-5	0.908	INTRON pHCl
3L	2575377	3L_2575377_SNP [dm3] 3L_2575377_SNP [dm6]	T	A	7.028e^-5	0.908	INTRON msn
3L	17631303	3L_17631303_SNP [dm3] 3L_17638203_SNP [dm6]	T	G	7.036e^-5	0.908	UTR_3_PRIME Pep DOWNSTREAM CG7497	TF binding site mE1_TFBS_cad
2R	9686919	2R_9686919_SNP [dm3] 2R_13799414_SNP [dm6]	G	T	7.107e^-5	0.908	INTRON Cpr50Cb
3R	3951959	3R_3951959_SNP [dm3] 3R_8126237_SNP [dm6]	C	T	7.150e^-5	0.908	SYNONYMOUS_CODING CG9667 UTR_5_PRIME CG9667 UPSTREAM Gie DOWNSTREAM CG7878	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7161087	3R_7161087_SNP [dm3] 3R_11335365_SNP [dm6]	G	A	7.180e^-5	0.908	UTR_5_PRIME pros INTRON pros	TF binding site BDTNP1_TFBS_dl
2R	16545546	2R_16545546_SNP [dm3] 2R_20658041_SNP [dm6]	C	T	7.271e^-5	0.908	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
2L	21807650	2L_21807650_SNP [dm3] 2L_21807650_SNP [dm6]	T	C	7.305e^-5	0.908	INTERGENIC
X	7747900	X_7747900_SNP [dm3] X_7853867_SNP [dm6]	G	C	7.343e^-5	0.908	SYNONYMOUS_CODING CG10920
2R	6861814	2R_6861814_SNP [dm3] 2R_10974309_SNP [dm6]	G	A	7.366e^-5	0.908	INTERGENIC
2L	8246550	2L_8246550_SNP [dm3] 2L_8246550_SNP [dm6]	A	T	7.389e^-5	0.908	INTRON CG8086
3R	18059183	3R_18059183_SNP [dm3] 3R_22233461_SNP [dm6]	G	A	7.425e^-5	0.908	INTRON SKIP
3L	17405412	3L_17405412_SNP [dm3] 3L_17412312_SNP [dm6]	G	A	7.592e^-5	0.908	INTRON blot	TF binding site BDTNP1_TFBS_Med
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	7.619e^-5	0.908	INTRON slou
3L	21498360	3L_21498360_SNP [dm3] 3L_21505260_SNP [dm6]	A	G	7.730e^-5	0.908	SYNONYMOUS_CODING Glg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7144253	2L_7144253_SNP [dm3] 2L_7144253_SNP [dm6]	T	G	7.738e^-5	0.908	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18059495	3R_18059495_SNP [dm3] 3R_22233773_SNP [dm6]	C	G	7.744e^-5	0.908	INTRON SKIP
3R	25549230	3R_25549230_SNP [dm3] 3R_29723508_SNP [dm6]	G	T	7.816e^-5	0.908	NON_SYNONYMOUS_CODING Pcd DOWNSTREAM CG34296 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11068477	X_11068477_SNP [dm3] X_11174444_SNP [dm6]	C	T	7.834e^-5	0.908	INTERGENIC
2L	9059061	2L_9059061_SNP [dm3] 2L_9059061_SNP [dm6]	T	A	7.877e^-5	0.908	INTRON CG31708
3L	2875573	3L_2875573_SNP [dm3] 3L_2875573_SNP [dm6]	G	A	7.973e^-5	0.908	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9365340	3L_9365340_SNP [dm3] 3L_9372240_SNP [dm6]	G	A	8.010e^-5	0.908	SYNONYMOUS_CODING Hsp67Bc UPSTREAM Hsp67Bb & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4024877	3R_4024877_SNP [dm3] 3R_8199155_SNP [dm6]	C	A	8.023e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	8581030	2R_8581030_SNP [dm3] 2R_12693525_SNP [dm6]	T	C	8.051e^-5	0.908	UPSTREAM CG8768 INTERGENIC
3L	14361405	3L_14361405_INS [dm3] 3L_14368305_INS [dm6]	A	ACA	8.085e^-5	0.908	UTR_3_PRIME fz DOWNSTREAM CG13481
3L	2567110	3L_2567110_SNP [dm3] 3L_2567110_SNP [dm6]	C	G	8.110e^-5	0.908	SYNONYMOUS_CODING msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11515892	2R_11515892_SNP [dm3] 2R_15628387_SNP [dm6]	T	C	8.114e^-5	0.908	INTRON CG42524
3R	5456349	3R_5456349_SNP [dm3] 3R_9630627_SNP [dm6]	G	A	8.181e^-5	0.908	INTRON Crc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	16406104	2L_16406104_SNP [dm3] 2L_16406104_SNP [dm6]	C	T	8.233e^-5	0.908	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6861861	2R_6861861_SNP [dm3] 2R_10974356_SNP [dm6]	A	G	8.295e^-5	0.908	INTERGENIC
X	18197244	X_18197244_DEL [dm3] X_18303211_DEL [dm6]	GG	G	8.347e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18371371	3R_18371371_SNP [dm3] 3R_22545649_SNP [dm6]	A	G	8.389e^-5	0.908	INTRON AdipoR
X	18633137	X_18633137_INS [dm3] X_18739104_INS [dm6]	A	ACGAGGATGAGGA...	8.434e^-5	0.908	DOWNSTREAM CG6873 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6861815	2R_6861815_SNP [dm3] 2R_10974310_SNP [dm6]	A	C	8.454e^-5	0.908	INTERGENIC
3L	7430629	3L_7430629_SNP [dm3] 3L_7437529_SNP [dm6]	C	T	8.459e^-5	0.908	UPSTREAM CG14835 DOWNSTREAM sphinx1 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6861837	2R_6861837_SNP [dm3] 2R_10974332_SNP [dm6]	A	G	8.547e^-5	0.908	INTERGENIC
3R	25549232	3R_25549232_SNP [dm3] 3R_29723510_SNP [dm6]	G	A	8.573e^-5	0.908	SYNONYMOUS_CODING Pcd DOWNSTREAM CG34296 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13684114	3L_13684114_SNP [dm3] 3L_13691014_SNP [dm6]	G	C	8.588e^-5	0.908	INTRON bru-3
2L	8246578	2L_8246578_SNP [dm3] 2L_8246578_SNP [dm6]	A	G	8.679e^-5	0.908	INTRON CG8086
2L	3412898	2L_3412898_SNP [dm3] 2L_3412898_SNP [dm6]	G	A	8.718e^-5	0.908	INTRON pgant2
X	3211359	X_3211359_SNP [dm3] X_3317326_SNP [dm6]	G	A	8.754e^-5	0.908	UPSTREAM CG10793 INTRON dnc & 1 other
3L	2057939	3L_2057939_SNP [dm3] 3L_2057939_SNP [dm6]	C	T	8.768e^-5	0.908	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13365846	X_13365846_DEL [dm3] X_13471813_DEL [dm6]	TC	T	8.825e^-5	0.908	INTRON Neto
2L	7485563	2L_7485563_SNP [dm3] 2L_7485563_SNP [dm6]	G	T	8.903e^-5	0.908	INTRON Ziz
2R	8533527	2R_8533527_SNP [dm3] 2R_12646022_SNP [dm6]	A	T	8.921e^-5	0.908	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3R	23064112	3R_23064112_SNP [dm3] 3R_27238390_SNP [dm6]	G	A	8.986e^-5	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	14040169	3R_14040169_SNP [dm3] 3R_18214447_SNP [dm6]	C	A	9.031e^-5	0.908	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13808578	2R_13808578_SNP [dm3] 2R_17921073_SNP [dm6]	C	T	9.039e^-5	0.908	INTRON Elk
2R	17616842	2R_17616842_SNP [dm3] 2R_21729337_SNP [dm6]	G	A	9.062e^-5	0.908	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6861825	2R_6861825_SNP [dm3] 2R_10974320_SNP [dm6]	C	T	9.064e^-5	0.908	INTERGENIC
2L	4269528	2L_4269528_SNP [dm3] 2L_4269528_SNP [dm6]	C	T	9.142e^-5	0.908	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3093539	3L_3093539_SNP [dm3] 3L_3093539_SNP [dm6]	G	A	9.272e^-5	0.908	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18839832	3R_18839832_SNP [dm3] 3R_23014110_SNP [dm6]	T	C	9.293e^-5	0.908	INTRON CG6688	TF binding site mE1_TFBS_chinmo
X	18193855	X_18193855_SNP [dm3] X_18299822_SNP [dm6]	A	G	9.305e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr
2R	15145525	2R_15145525_SNP [dm3] 2R_19258020_SNP [dm6]	G	A	9.376e^-5	0.908	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	15008984	3R_15008984_SNP [dm3] 3R_19183262_SNP [dm6]	G	T	9.412e^-5	0.908	INTRON CG31475
2R	9404267	2R_9404267_SNP [dm3] 2R_13516762_SNP [dm6]	A	G	9.456e^-5	0.908	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad
2R	19709480	2R_19709480_INS [dm3] 2R_23821957_INS [dm6]	C	CTCAGTATTTATACCCGAAT...	9.458e^-5	0.908	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3R	6440408	3R_6440408_SNP [dm3] 3R_10614686_SNP [dm6]	C	G	9.512e^-5	0.908	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18059354	3R_18059354_SNP [dm3] 3R_22233632_SNP [dm6]	C	G	9.571e^-5	0.908	INTRON SKIP
3L	13066503	3L_13066503_SNP [dm3] 3L_13073403_SNP [dm6]	G	C	9.620e^-5	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
X	11821301	X_11821301_SNP [dm3] X_11927268_SNP [dm6]	C	A	9.665e^-5	0.908	INTRON CG10362
2L	8325619	2L_8325619_SNP [dm3] 2L_8325619_SNP [dm6]	T	C	9.668e^-5	0.908	UPSTREAM CG7781 INTERGENIC
2R	8804148	2R_8804148_SNP [dm3] 2R_12916643_SNP [dm6]	T	C	9.711e^-5	0.908	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11140775	2L_11140775_SNP [dm3] 2L_11140775_SNP [dm6]	G	C	9.780e^-5	0.908	INTRON Gyc32E
X	18195485	X_18195485_SNP [dm3] X_18301452_SNP [dm6]	G	C	9.813e^-5	0.908	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3368299	X_3368299_MNP [dm3] X_3474266_MNP [dm6]	TCG	ATT	9.814e^-5	0.908	UTR_5_PRIME CG12206 UPSTREAM CG12206 INTRON CR44999 & 1 other
2L	3176619	2L_3176619_SNP [dm3] 2L_3176619_SNP [dm6]	C	T	9.913e^-5	0.908	INTRON CG34393
3R	18967135	3R_18967135_SNP [dm3] 3R_23141413_SNP [dm6]	C	T	9.914e^-5	0.908	NON_SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5726169	2L_5726169_SNP [dm3] 2L_5726169_SNP [dm6]	G	T	9.916e^-5	0.908	DOWNSTREAM CG14006 INTRON CG11030
2R	12389714	2R_12389714_SNP [dm3] 2R_16502209_SNP [dm6]	A	G	9.964e^-5	0.908	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2L	16422200	2L_16422200_DEL [dm3] 2L_16422200_DEL [dm6]	TATATGTTTTAAATATGT...	T	9.981e^-5	0.908	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7754230	3L_7754230_DEL [dm3] 3L_7761130_DEL [dm6]	AC	A	9.990e^-5	0.908	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
3L	14404144	3L_14404144_SNP [dm3] 3L_14411044_SNP [dm6]	T	C	1.009e^-4	0.908	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17979568	2R_17979568_SNP [dm3] 2R_22092063_SNP [dm6]	C	T	1.013e^-4	0.908	SPLICE_SITE_ACCEPTOR CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_chinmo
X	14793647	X_14793647_SNP [dm3] X_14899614_SNP [dm6]	T	A	1.026e^-4	0.908	INTRON Flo2
2R	6740078	2R_6740078_SNP [dm3] 2R_10852573_SNP [dm6]	A	G	1.030e^-4	0.908	UPSTREAM CR45136 INTRON CG30015
3L	15865896	3L_15865896_DEL [dm3] 3L_15872796_DEL [dm6]	CTCAC	C	1.041e^-4	0.908	INTRON pHCl
2L	14379639	2L_14379639_SNP [dm3] 2L_14379639_SNP [dm6]	C	T	1.041e^-4	0.908	INTRON ppk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16545569	2R_16545569_SNP [dm3] 2R_20658064_SNP [dm6]	A	T	1.046e^-4	0.908	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
2R	6740115	2R_6740115_SNP [dm3] 2R_10852610_SNP [dm6]	T	G	1.054e^-4	0.908	UPSTREAM CR45136 INTRON CG30015
X	21185837	X_21185837_SNP [dm3] X_21314810_SNP [dm6]	A	T	1.057e^-4	0.908	INTRON CG1801
3L	19515108	3L_19515108_SNP [dm3] 3L_19522008_SNP [dm6]	C	T	1.059e^-4	0.908	INTRON Cpr76Bc
2L	5909449	2L_5909449_SNP [dm3] 2L_5909449_SNP [dm6]	T	G	1.059e^-4	0.908	NON_SYNONYMOUS_CODING CG14000 INTRON bchs
3L	11654784	3L_11654784_SNP [dm3] 3L_11661684_SNP [dm6]	A	G	1.060e^-4	0.908	INTRON CG32085
2L	9086201	2L_9086201_SNP [dm3] 2L_9086201_SNP [dm6]	A	T	1.063e^-4	0.908	INTRON Toll-4
3R	3974769	3R_3974769_DEL [dm3] 3R_8149047_DEL [dm6]	GAAAAAGTCTTCTTAATTAT...	G	1.066e^-4	0.908	INTRON grn
X	7747855	X_7747855_SNP [dm3] X_7853822_SNP [dm6]	T	A	1.069e^-4	0.908	NON_SYNONYMOUS_CODING CG10920
2L	15763302	2L_15763302_SNP [dm3] 2L_15763302_SNP [dm6]	G	A	1.072e^-4	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18938971	2R_18938971_SNP [dm3] 2R_23051448_SNP [dm6]	C	G	1.077e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	10326282	X_10326282_INS [dm3] X_10432249_INS [dm6]	A	AT	1.083e^-4	0.908	DOWNSTREAM CG12640 INTRON CG32683
2L	11248613	2L_11248613_SNP [dm3] 2L_11248613_SNP [dm6]	T	C	1.084e^-4	0.908	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12204300	X_12204300_SNP [dm3] X_12310267_SNP [dm6]	G	A	1.087e^-4	0.908	INTRON Ten-a
3R	22014987	3R_22014987_SNP [dm3] 3R_26189265_SNP [dm6]	A	G	1.087e^-4	0.908	SYNONYMOUS_CODING CG34130 UPSTREAM CG6073 DOWNSTREAM CG34129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	16545568	2R_16545568_SNP [dm3] 2R_20658063_SNP [dm6]	T	A	1.104e^-4	0.908	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
3R	18084312	3R_18084312_SNP [dm3] 3R_22258590_SNP [dm6]	A	T	1.108e^-4	0.908	INTRON SKIP
X	5380557	X_5380557_SNP [dm3] X_5486524_SNP [dm6]	T	C	1.112e^-4	0.908	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3176559	2L_3176559_SNP [dm3] 2L_3176559_SNP [dm6]	T	A	1.114e^-4	0.908	INTRON CG34393
X	12865993	X_12865993_SNP [dm3] X_12971960_SNP [dm6]	C	T	1.116e^-4	0.908	SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	5882328	3L_5882328_SNP [dm3] 3L_5889228_SNP [dm6]	G	C	1.137e^-4	0.908	INTERGENIC
X	15358761	X_15358761_SNP [dm3] X_15464728_SNP [dm6]	G	A	1.141e^-4	0.908	UTR_5_PRIME CG6299 UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
2L	9380726	2L_9380726_SNP [dm3] 2L_9380726_SNP [dm6]	A	T	1.142e^-4	0.908	INTRON Shawl
X	18192665	X_18192665_SNP [dm3] X_18298632_SNP [dm6]	C	G	1.147e^-4	0.908	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16309500	3R_16309500_SNP [dm3] 3R_20483778_SNP [dm6]	G	A	1.150e^-4	0.908	INTRON Gfrl
2R	6861842	2R_6861842_DEL [dm3] 2R_10974337_DEL [dm6]	TT	T	1.162e^-4	0.908	INTERGENIC
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	1.162e^-4	0.908	INTRON sick
3R	9759805	3R_9759805_SNP [dm3] 3R_13934083_SNP [dm6]	C	T	1.167e^-4	0.908	INTERGENIC
2L	10995745	2L_10995745_SNP [dm3] 2L_10995745_SNP [dm6]	T	C	1.168e^-4	0.908	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	11180322	3L_11180322_DEL [dm3] 3L_11187222_DEL [dm6]	AATGTTGGC	A	1.173e^-4	0.908	INTRON GlcAT-P
X	19690178	X_19690178_SNP [dm3] X_19796145_SNP [dm6]	T	A	1.179e^-4	0.908	INTERGENIC
2L	10995723	2L_10995723_SNP [dm3] 2L_10995723_SNP [dm6]	G	T	1.184e^-4	0.908	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3R	23064193	3R_23064193_SNP [dm3] 3R_27238471_SNP [dm6]	G	A	1.190e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16189171	2R_16189171_INS [dm3] 2R_20301666_INS [dm6]	T	TTGCTGTAACTATT...	1.193e^-4	0.908	UPSTREAM CR44640 INTERGENIC
2R	8438815	2R_8438815_SNP [dm3] 2R_12551310_SNP [dm6]	C	G	1.194e^-4	0.908	INTRON fra
X	18833856	X_18833856_SNP [dm3] X_18939823_SNP [dm6]	G	A	1.196e^-4	0.908	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	21830844	2L_21830844_SNP [dm3] 2L_21830844_SNP [dm6]	C	A	1.201e^-4	0.908	INTRON tsh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1939528	3L_1939528_SNP [dm3] 3L_1939528_SNP [dm6]	A	G	1.201e^-4	0.908	UPSTREAM CG5687 EXON CR44536
2L	9059046	2L_9059046_SNP [dm3] 2L_9059046_SNP [dm6]	G	T	1.206e^-4	0.908	INTRON CG31708
3L	22784338	3L_22784338_SNP [dm3] 3L_22791238_SNP [dm6]	C	G	1.212e^-4	0.908	UTR_3_PRIME jim
3R	23431266	3R_23431266_SNP [dm3] 3R_27605544_SNP [dm6]	C	T	1.215e^-4	0.908	INTRON dsd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21807162	2L_21807162_SNP [dm3] 2L_21807162_SNP [dm6]	C	T	1.222e^-4	0.908	INTERGENIC
3L	15392820	3L_15392820_SNP [dm3] 3L_15399720_SNP [dm6]	C	T	1.224e^-4	0.908	INTERGENIC
3L	12381147	3L_12381147_SNP [dm3] 3L_12388047_SNP [dm6]	T	A	1.227e^-4	0.908	UPSTREAM Ncc69 INTRON Ncc69
3L	7927006	3L_7927006_SNP [dm3] 3L_7933906_SNP [dm6]	A	G	1.227e^-4	0.908	INTRON syd	TF binding site mE1_TFBS_cad
X	4786069	X_4786069_DEL [dm3] X_4892036_DEL [dm6]	TGCACAGCTTCTCAGC...	AT	1.249e^-4	0.908	INTRON CG42594
3R	17380785	3R_17380785_SNP [dm3] 3R_21555063_SNP [dm6]	G	A	1.251e^-4	0.908	INTRON slou
2L	8242932	2L_8242932_SNP [dm3] 2L_8242932_SNP [dm6]	G	C	1.258e^-4	0.908	SYNONYMOUS_CODING CG14277 DOWNSTREAM CG43057 & 1 other
3R	19620001	3R_19620001_SNP [dm3] 3R_23794279_SNP [dm6]	C	T	1.258e^-4	0.908	INTRON mbc
2R	17616847	2R_17616847_SNP [dm3] 2R_21729342_SNP [dm6]	A	C	1.261e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14281170	2R_14281170_SNP [dm3] 2R_18393665_SNP [dm6]	A	T	1.262e^-4	0.908	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8068260	2L_8068260_SNP [dm3] 2L_8068260_SNP [dm6]	A	T	1.273e^-4	0.908	NON_SYNONYMOUS_CODING poe
3R	7337157	3R_7337157_SNP [dm3] 3R_11511435_SNP [dm6]	C	G	1.280e^-4	0.908	INTERGENIC
3L	12352339	3L_12352339_SNP [dm3] 3L_12359239_SNP [dm6]	A	G	1.281e^-4	0.908	INTERGENIC
3R	23064057	3R_23064057_SNP [dm3] 3R_27238335_SNP [dm6]	A	T	1.284e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	3519981	X_3519981_SNP [dm3] X_3625948_SNP [dm6]	C	A	1.286e^-4	0.908	INTRON AstA-R1
3L	15806299	3L_15806299_SNP [dm3] 3L_15813199_SNP [dm6]	C	T	1.290e^-4	0.908	INTRON fwe
X	11269828	X_11269828_SNP [dm3] X_11375795_SNP [dm6]	G	A	1.294e^-4	0.908	UTR_5_PRIME dlg1 INTRON dlg1
3R	15003401	3R_15003401_SNP [dm3] 3R_19177679_SNP [dm6]	G	A	1.299e^-4	0.908	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24475687	3R_24475687_SNP [dm3] 3R_28649965_SNP [dm6]	G	A	1.299e^-4	0.908	UTR_3_PRIME CG31050 DOWNSTREAM CG31050
X	16761643	X_16761643_SNP [dm3] X_16867610_SNP [dm6]	G	A	1.301e^-4	0.908	INTRON CG13003
2L	8615186	2L_8615186_SNP [dm3] 2L_8615186_SNP [dm6]	A	G	1.304e^-4	0.908	INTRON Sema-1a
3L	12381151	3L_12381151_SNP [dm3] 3L_12388051_SNP [dm6]	A	G	1.311e^-4	0.908	UPSTREAM Ncc69 INTRON Ncc69
X	17729160	X_17729160_INS [dm3] X_17835127_INS [dm6]	T	TT	1.314e^-4	0.908	INTRON CG6398
3R	18371293	3R_18371293_SNP [dm3] 3R_22545571_SNP [dm6]	A	G	1.317e^-4	0.908	INTRON AdipoR
2L	20638141	2L_20638141_SNP [dm3] 2L_20638141_SNP [dm6]	G	T	1.328e^-4	0.908	UPSTREAM CR43158 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA transposable element FlyBase
2L	4300475	2L_4300475_SNP [dm3] 2L_4300475_SNP [dm6]	T	G	1.341e^-4	0.908	INTRON tutl
2L	10995768	2L_10995768_SNP [dm3] 2L_10995768_SNP [dm6]	A	T	1.351e^-4	0.908	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	14710902	2L_14710902_SNP [dm3] 2L_14710902_SNP [dm6]	A	T	1.354e^-4	0.908	INTERGENIC
2R	15897440	2R_15897440_SNP [dm3] 2R_20009935_SNP [dm6]	A	G	1.354e^-4	0.908	INTERGENIC
3R	2537745	3R_2537745_SNP [dm3] 3R_6712023_SNP [dm6]	C	T	1.359e^-4	0.908	INTRON pb	regulatory region REDfly_CRMs
2R	12089017	2R_12089017_DEL [dm3] 2R_16201512_DEL [dm6]	AA	A	1.362e^-4	0.908	SPLICE_SITE_REGION shark INTRON shark	TF binding site mE1_TFBS_chinmo
3L	15867278	3L_15867278_SNP [dm3] 3L_15874178_SNP [dm6]	C	T	1.379e^-4	0.908	INTRON pHCl
2L	9059122	2L_9059122_SNP [dm3] 2L_9059122_SNP [dm6]	A	C	1.388e^-4	0.908	INTRON CG31708
2R	14019971	2R_14019971_SNP [dm3] 2R_18132466_SNP [dm6]	T	G	1.389e^-4	0.908	SYNONYMOUS_CODING Hsf	TF binding site mE1_TFBS_sens
3L	15392816	3L_15392816_SNP [dm3] 3L_15399716_SNP [dm6]	C	T	1.389e^-4	0.908	INTERGENIC
3R	21446266	3R_21446266_SNP [dm3] 3R_25620544_SNP [dm6]	T	A	1.390e^-4	0.908	UTR_3_PRIME CG5071 INTRON Npl4
2R	9240636	2R_9240636_SNP [dm3] 2R_13353131_SNP [dm6]	A	G	1.391e^-4	0.908	DOWNSTREAM CG17048 INTRON CR44206
3L	7754330	3L_7754330_SNP [dm3] 3L_7761230_SNP [dm6]	T	A	1.396e^-4	0.908	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2R	12389477	2R_12389477_SNP [dm3] 2R_16501972_SNP [dm6]	G	C	1.402e^-4	0.908	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2R	11889850	2R_11889850_SNP [dm3] 2R_16002345_SNP [dm6]	C	T	1.405e^-4	0.908	SYNONYMOUS_CODING CG8370	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20788754	2L_20788754_SNP [dm3] 2L_20788754_SNP [dm6]	T	C	1.408e^-4	0.908	UTR_3_PRIME Pomp & 1 other DOWNSTREAM vari
2L	8615185	2L_8615185_SNP [dm3] 2L_8615185_SNP [dm6]	T	A	1.416e^-4	0.908	INTRON Sema-1a
2L	9819407	2L_9819407_SNP [dm3] 2L_9819407_SNP [dm6]	A	G	1.417e^-4	0.908	INTRON nAChRalpha6
X	4273904	X_4273904_SNP [dm3] X_4379871_SNP [dm6]	A	T	1.423e^-4	0.908	UPSTREAM CG12688 INTERGENIC
2L	19202390	2L_19202390_SNP [dm3] 2L_19202390_SNP [dm6]	G	A	1.431e^-4	0.908	INTRON drl	regulatory region REDfly_CRMs
3L	15392830	3L_15392830_SNP [dm3] 3L_15399730_SNP [dm6]	G	T	1.435e^-4	0.908	INTERGENIC
3L	18418020	3L_18418020_SNP [dm3] 3L_18424920_SNP [dm6]	C	T	1.457e^-4	0.908	INTERGENIC
3R	6999443	3R_6999443_SNP [dm3] 3R_11173721_SNP [dm6]	G	C	1.459e^-4	0.908	NON_SYNONYMOUS_CODING Ugt86Dj
2R	16545596	2R_16545596_SNP [dm3] 2R_20658091_SNP [dm6]	T	C	1.459e^-4	0.908	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
3L	7927722	3L_7927722_INS [dm3] 3L_7934622_INS [dm6]	T	TAAGTCTCAGT...	1.460e^-4	0.908	UPSTREAM syd INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	22226817	3R_22226817_SNP [dm3] 3R_26401095_SNP [dm6]	C	A	1.461e^-4	0.908	DOWNSTREAM ppk15 INTERGENIC
3R	23064208	3R_23064208_SNP [dm3] 3R_27238486_SNP [dm6]	T	A	1.462e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	16729875	X_16729875_SNP [dm3] X_16835842_SNP [dm6]	A	T	1.469e^-4	0.908	UPSTREAM CG13004 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17470039	2R_17470039_DEL [dm3] 2R_21582534_DEL [dm6]	GTCTTCAA	CG	1.473e^-4	0.908	UPSTREAM CG30222 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13338159	X_13338159_INS [dm3] X_13444126_INS [dm6]	A	AG	1.495e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3601748	2L_3601748_SNP [dm3] 2L_3601748_SNP [dm6]	C	T	1.498e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2L	9346030	2L_9346030_SNP [dm3] 2L_9346030_SNP [dm6]	T	A	1.509e^-4	0.908	INTERGENIC
2L	20511982	2L_20511982_SNP [dm3] 2L_20511982_SNP [dm6]	T	C	1.515e^-4	0.908	INTERGENIC
2L	3775413	2L_3775413_SNP [dm3] 2L_3775413_SNP [dm6]	T	A	1.516e^-4	0.908	INTRON bowl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6000786	3R_6000786_SNP [dm3] 3R_10175064_SNP [dm6]	A	C	1.518e^-4	0.908	INTRON CG12814
3R	17296797	3R_17296797_SNP [dm3] 3R_21471075_SNP [dm6]	G	A	1.525e^-4	0.908	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18371779	3R_18371779_SNP [dm3] 3R_22546057_SNP [dm6]	T	C	1.534e^-4	0.908	INTRON AdipoR
3L	9271955	3L_9271955_SNP [dm3] 3L_9278855_SNP [dm6]	T	C	1.538e^-4	0.908	INTRON GluRIB
2R	10268812	2R_10268812_SNP [dm3] 2R_14381307_SNP [dm6]	G	A	1.540e^-4	0.908	INTRON Dh44-R1
3L	12932345	3L_12932345_SNP [dm3] 3L_12939245_SNP [dm6]	G	A	1.543e^-4	0.908	INTERGENIC
2L	16422189	2L_16422189_SNP [dm3] 2L_16422189_SNP [dm6]	T	C	1.543e^-4	0.908	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	14395920	3L_14395920_SNP [dm3] 3L_14402820_SNP [dm6]	T	A	1.552e^-4	0.908	UPSTREAM CG3868 DOWNSTREAM stwl INTERGENIC
2L	3176405	2L_3176405_SNP [dm3] 2L_3176405_SNP [dm6]	G	T	1.554e^-4	0.908	INTRON CG34393
2L	19874712	2L_19874712_SNP [dm3] 2L_19874712_SNP [dm6]	T	C	1.558e^-4	0.908	INTRON sick	TF binding site mE1_TFBS_cad
2L	2353577	2L_2353577_SNP [dm3] 2L_2353577_SNP [dm6]	C	A	1.586e^-4	0.908	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3327719	X_3327719_SNP [dm3] X_3433686_SNP [dm6]	A	T	1.587e^-4	0.908	INTRON CR44999 & 1 other
3R	23673577	3R_23673577_SNP [dm3] 3R_27847855_SNP [dm6]	C	T	1.592e^-4	0.908	DOWNSTREAM Or98a INTRON CG34353
2L	5999935	2L_5999935_SNP [dm3] 2L_5999935_SNP [dm6]	C	T	1.603e^-4	0.908	UPSTREAM Tsp26A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19589000	3R_19589000_DEL [dm3] 3R_23763278_DEL [dm6]	TAGCT	T	1.604e^-4	0.908	UPSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	4786089	X_4786089_SNP [dm3] X_4892056_SNP [dm6]	G	A	1.605e^-4	0.908	INTRON CG42594
X	19875768	X_19875768_SNP [dm3] X_19981735_SNP [dm6]	G	A	1.606e^-4	0.908	INTERGENIC
X	4273670	X_4273670_SNP [dm3] X_4379637_SNP [dm6]	G	A	1.606e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_sens
2R	19283347	2R_19283347_SNP [dm3] 2R_23395824_SNP [dm6]	A	C	1.616e^-4	0.908	UPSTREAM CG3530 DOWNSTREAM CG3520 INTRON CG3530	TF binding site mE1_TFBS_Trl
2R	6374668	2R_6374668_SNP [dm3] 2R_10487163_SNP [dm6]	A	G	1.620e^-4	0.908	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	8615278	3L_8615278_SNP [dm3] 3L_8622178_SNP [dm6]	C	T	1.633e^-4	0.908	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
3L	7927801	3L_7927801_DEL [dm3] 3L_7934701_DEL [dm6]	GAATTTCTATAG...	G	1.639e^-4	0.908	UPSTREAM syd INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17188663	3L_17188663_SNP [dm3] 3L_17195563_SNP [dm6]	C	T	1.645e^-4	0.908	INTRON Rbp6	TF binding site mE1_TFBS_inv
2L	4816207	2L_4816207_SNP [dm3] 2L_4816207_SNP [dm6]	T	G	1.656e^-4	0.908	NON_SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
2L	6665383	2L_6665383_SNP [dm3] 2L_6665383_SNP [dm6]	A	G	1.659e^-4	0.908	SYNONYMOUS_CODING cup UTR_5_PRIME CG34310 DOWNSTREAM Galt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5404925	2L_5404925_SNP [dm3] 2L_5404925_SNP [dm6]	C	A	1.668e^-4	0.908	NON_SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	4620842	2R_4620842_SNP [dm3] 2R_8733337_SNP [dm6]	G	C	1.677e^-4	0.908	UTR_5_PRIME stmA INTRON stmA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15193067	2R_15193067_SNP [dm3] 2R_19305562_SNP [dm6]	G	C	1.680e^-4	0.908	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	12928122	3L_12928122_SNP [dm3] 3L_12935022_SNP [dm6]	G	C	1.703e^-4	0.908	INTERGENIC
X	3790350	X_3790350_SNP [dm3] X_3896317_SNP [dm6]	G	A	1.703e^-4	0.908	SYNONYMOUS_CODING CG42541	TF binding site mE1_TFBS_chinmo
3L	14432271	3L_14432271_SNP [dm3] 3L_14439171_SNP [dm6]	T	G	1.705e^-4	0.908	INTRON bbg
3L	12867497	3L_12867497_SNP [dm3] 3L_12874397_SNP [dm6]	C	G	1.710e^-4	0.908	INTERGENIC
2L	19636320	2L_19636320_SNP [dm3] 2L_19636320_SNP [dm6]	A	G	1.727e^-4	0.908	INTRON Lar
X	12865927	X_12865927_SNP [dm3] X_12971894_SNP [dm6]	A	T	1.732e^-4	0.908	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	15750556	2L_15750556_SNP [dm3] 2L_15750556_SNP [dm6]	G	A	1.741e^-4	0.908	SYNONYMOUS_CODING l_2_35Di	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2575378	3L_2575378_SNP [dm3] 3L_2575378_SNP [dm6]	G	A	1.745e^-4	0.908	INTRON msn
3L	2575382	3L_2575382_SNP [dm3] 3L_2575382_SNP [dm6]	T	A	1.745e^-4	0.908	INTRON msn
2R	17773132	2R_17773132_DEL [dm3] 2R_21885627_DEL [dm6]	AGAAA	A	1.745e^-4	0.908	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15245948	2L_15245948_SNP [dm3] 2L_15245948_SNP [dm6]	T	C	1.766e^-4	0.908	UTR_5_PRIME ZnT35C INTRON ZnT35C
3R	25550803	3R_25550803_SNP [dm3] 3R_29725081_SNP [dm6]	T	C	1.767e^-4	0.908	UTR_5_PRIME CG18731 UPSTREAM Kul & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk mE1_TFBS_Ubx
2L	18812043	2L_18812043_SNP [dm3] 2L_18812043_SNP [dm6]	T	A	1.771e^-4	0.908	UPSTREAM CG10570 & 3 others INTERGENIC
3R	5438672	3R_5438672_SNP [dm3] 3R_9612950_SNP [dm6]	A	C	1.774e^-4	0.908	INTRON CG8312
X	7747866	X_7747866_SNP [dm3] X_7853833_SNP [dm6]	T	G	1.781e^-4	0.908	NON_SYNONYMOUS_CODING CG10920
X	15636564	X_15636564_SNP [dm3] X_15742531_SNP [dm6]	A	G	1.782e^-4	0.908	UTR_3_PRIME CG8944
2L	10995524	2L_10995524_SNP [dm3] 2L_10995524_SNP [dm6]	G	T	1.786e^-4	0.908	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
X	4273771	X_4273771_SNP [dm3] X_4379738_SNP [dm6]	T	C	1.788e^-4	0.908	INTERGENIC
3R	25079389	3R_25079389_SNP [dm3] 3R_29253667_SNP [dm6]	T	G	1.796e^-4	0.908	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	406287	3R_406287_SNP [dm3] 3R_4580565_SNP [dm6]	A	T	1.796e^-4	0.908	INTERGENIC	transposable element FlyBase
2R	9404130	2R_9404130_SNP [dm3] 2R_13516625_SNP [dm6]	T	A	1.803e^-4	0.908	NON_SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13993677	2L_13993677_SNP [dm3] 2L_13993677_SNP [dm6]	C	G	1.810e^-4	0.908	UTR_5_PRIME rk
2L	13993679	2L_13993679_INS [dm3] 2L_13993679_INS [dm6]	G	GCAAC	1.810e^-4	0.908	UTR_5_PRIME rk
2L	13993681	2L_13993681_SNP [dm3] 2L_13993681_SNP [dm6]	T	G	1.810e^-4	0.908	UTR_5_PRIME rk
2L	19005467	2L_19005467_SNP [dm3] 2L_19005467_SNP [dm6]	A	G	1.811e^-4	0.908	SYNONYMOUS_CODING CG31793	TF binding site mE1_TFBS_chinmo
3L	10563298	3L_10563298_SNP [dm3] 3L_10570198_SNP [dm6]	A	G	1.814e^-4	0.908	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2R	6430688	2R_6430688_SNP [dm3] 2R_10543183_SNP [dm6]	G	A	1.816e^-4	0.908	UTR_5_PRIME lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	3884823	3R_3884823_SNP [dm3] 3R_8059101_SNP [dm6]	C	T	1.820e^-4	0.908	UPSTREAM mAChR-B INTERGENIC
3L	14428778	3L_14428778_SNP [dm3] 3L_14435678_SNP [dm6]	G	A	1.821e^-4	0.908	INTRON bbg
3L	21491218	3L_21491218_SNP [dm3] 3L_21498118_SNP [dm6]	T	A	1.827e^-4	0.908	UTR_3_PRIME Glg1 UPSTREAM Hr78 INTRON CR43933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8695949	2L_8695949_SNP [dm3] 2L_8695949_SNP [dm6]	G	C	1.827e^-4	0.908	INTRON Hnf4
2R	19376000	2R_19376000_SNP [dm3] 2R_23488477_SNP [dm6]	A	T	1.834e^-4	0.908	INTRON CG43795
2R	4074894	2R_4074894_SNP [dm3] 2R_8187389_SNP [dm6]	A	G	1.840e^-4	0.908	INTRON LRP1
2L	21807647	2L_21807647_SNP [dm3] 2L_21807647_SNP [dm6]	A	T	1.858e^-4	0.908	INTERGENIC
2R	9686527	2R_9686527_SNP [dm3] 2R_13799022_SNP [dm6]	A	G	1.862e^-4	0.908	INTRON Cpr50Cb
3R	6974649	3R_6974649_SNP [dm3] 3R_11148927_SNP [dm6]	A	T	1.865e^-4	0.908	INTERGENIC
3L	20030395	3L_20030395_SNP [dm3] 3L_20037295_SNP [dm6]	C	T	1.867e^-4	0.908	INTERGENIC
3R	16325857	3R_16325857_SNP [dm3] 3R_20500135_SNP [dm6]	T	G	1.873e^-4	0.908	SYNONYMOUS_CODING Dic2
3L	18436077	3L_18436077_SNP [dm3] 3L_18442977_SNP [dm6]	A	T	1.875e^-4	0.908	INTERGENIC
3L	10174770	3L_10174770_SNP [dm3] 3L_10181670_SNP [dm6]	A	C	1.885e^-4	0.908	INTRON dpr10
2R	17082366	2R_17082366_SNP [dm3] 2R_21194861_SNP [dm6]	A	G	1.903e^-4	0.908	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10954560	2R_10954560_SNP [dm3] 2R_15067055_SNP [dm6]	C	T	1.912e^-4	0.908	INTERGENIC
3R	22227128	3R_22227128_SNP [dm3] 3R_26401406_SNP [dm6]	G	T	1.914e^-4	0.908	DOWNSTREAM ppk15 INTERGENIC
3R	13425255	3R_13425255_SNP [dm3] 3R_17599533_SNP [dm6]	A	T	1.920e^-4	0.908	INTERGENIC
3L	17170317	3L_17170317_INS [dm3] 3L_17177217_INS [dm6]	T	TT	1.920e^-4	0.908	INTRON Rbp6
3L	7754482	3L_7754482_SNP [dm3] 3L_7761382_SNP [dm6]	A	T	1.925e^-4	0.908	UTR_5_PRIME Hn INTRON Hn
3L	11948964	3L_11948964_SNP [dm3] 3L_11955864_SNP [dm6]	C	T	1.938e^-4	0.908	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2R	11727560	2R_11727560_SNP [dm3] 2R_15840055_SNP [dm6]	G	T	1.940e^-4	0.908	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17977966	2R_17977966_SNP [dm3] 2R_22090461_SNP [dm6]	C	T	1.941e^-4	0.908	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163
3L	10131884	3L_10131884_INS [dm3] 3L_10138784_INS [dm6]	G	GTCAGTCCGTTG...	1.949e^-4	0.908	INTRON dpr6
X	9509812	X_9509812_SNP [dm3] X_9615779_SNP [dm6]	A	G	1.951e^-4	0.908	UPSTREAM CG42797 INTRON CG42797
3L	7927084	3L_7927084_SNP [dm3] 3L_7933984_SNP [dm6]	C	A	1.954e^-4	0.908	SPLICE_SITE_DONOR syd INTRON syd	TF binding site mE1_TFBS_cad
X	17021978	X_17021978_SNP [dm3] X_17127945_SNP [dm6]	G	A	1.956e^-4	0.908	INTRON CG5004
3R	14647306	3R_14647306_SNP [dm3] 3R_18821584_SNP [dm6]	A	T	1.957e^-4	0.908	INTRON CG18208
X	16939659	X_16939659_SNP [dm3] X_17045626_SNP [dm6]	T	C	1.964e^-4	0.908	INTRON CG45002
X	3384336	X_3384336_DEL [dm3] X_3490303_DEL [dm6]	TAAT	T	1.965e^-4	0.908	UTR_3_PRIME CG10803 DOWNSTREAM Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3735095	3L_3735095_SNP [dm3] 3L_3735095_SNP [dm6]	G	T	1.967e^-4	0.908	INTRON CG32264
2L	10996543	2L_10996543_SNP [dm3] 2L_10996543_SNP [dm6]	A	C	1.969e^-4	0.908	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
X	2268062	X_2268062_SNP [dm3] X_2374029_SNP [dm6]	A	G	1.971e^-4	0.908	NON_SYNONYMOUS_CODING PsGEF SYNONYMOUS_CODING PsGEF	TF binding site mE1_TFBS_chinmo
3L	15014728	3L_15014728_SNP [dm3] 3L_15021628_SNP [dm6]	C	A	1.978e^-4	0.908	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15762147	2L_15762147_DEL [dm3] 2L_15762147_DEL [dm6]	GTTG	G	1.987e^-4	0.908	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14404575	3L_14404575_SNP [dm3] 3L_14411475_SNP [dm6]	T	A	1.991e^-4	0.908	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6740189	2R_6740189_SNP [dm3] 2R_10852684_SNP [dm6]	T	C	2.013e^-4	0.908	UPSTREAM CR45136 INTRON CG30015
3L	15634786	3L_15634786_SNP [dm3] 3L_15641686_SNP [dm6]	A	G	2.016e^-4	0.908	INTRON comm3
3R	13725229	3R_13725229_SNP [dm3] 3R_17899507_SNP [dm6]	A	G	2.017e^-4	0.908	INTRON Rim
3R	9769533	3R_9769533_SNP [dm3] 3R_13943811_SNP [dm6]	C	T	2.019e^-4	0.908	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15763320	2L_15763320_SNP [dm3] 2L_15763320_SNP [dm6]	T	A	2.022e^-4	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	22033049	2L_22033049_SNP [dm3] 2L_22033049_SNP [dm6]	T	G	2.025e^-4	0.908	EXON CR45335	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	16361100	3L_16361100_SNP [dm3] 3L_16368000_SNP [dm6]	A	G	2.027e^-4	0.908	UPSTREAM Cpr72Ec & 1 other INTERGENIC
2L	9150487	2L_9150487_SNP [dm3] 2L_9150487_SNP [dm6]	G	T	2.027e^-4	0.908	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25909499	3R_25909499_DEL [dm3] 3R_30083777_DEL [dm6]	ATGTGAACCA	A	2.032e^-4	0.908	INTRON sima
2R	19123266	2R_19123266_SNP [dm3] 2R_23235743_SNP [dm6]	A	G	2.032e^-4	0.908	INTERGENIC
2R	15451602	2R_15451602_SNP [dm3] 2R_19564097_SNP [dm6]	T	G	2.037e^-4	0.908	DOWNSTREAM tRNA:CR33535 INTRON sm
3L	15014724	3L_15014724_SNP [dm3] 3L_15021624_SNP [dm6]	T	C	2.042e^-4	0.908	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5120751	3R_5120751_SNP [dm3] 3R_9295029_SNP [dm6]	G	A	2.042e^-4	0.908	UTR_3_PRIME CG8861
3R	19009116	3R_19009116_SNP [dm3] 3R_23183394_SNP [dm6]	A	T	2.046e^-4	0.908	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10326226	X_10326226_SNP [dm3] X_10432193_SNP [dm6]	C	T	2.051e^-4	0.908	DOWNSTREAM CG12640 INTRON CG32683
3R	5473215	3R_5473215_SNP [dm3] 3R_9647493_SNP [dm6]	T	C	2.057e^-4	0.908	INTRON Dh44
2R	14477980	2R_14477980_SNP [dm3] 2R_18590475_SNP [dm6]	C	A	2.062e^-4	0.908	INTRON GEFmeso
3R	19900278	3R_19900278_SNP [dm3] 3R_24074556_SNP [dm6]	G	C	2.070e^-4	0.908	INTRON 4EHP
2L	8246539	2L_8246539_SNP [dm3] 2L_8246539_SNP [dm6]	G	T	2.080e^-4	0.908	INTRON CG8086
X	2947559	X_2947559_SNP [dm3] X_3053526_SNP [dm6]	G	T	2.092e^-4	0.908	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2353714	2L_2353714_SNP [dm3] 2L_2353714_SNP [dm6]	A	T	2.097e^-4	0.908	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16422184	2L_16422184_SNP [dm3] 2L_16422184_SNP [dm6]	G	T	2.098e^-4	0.908	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	2412246	X_2412246_SNP [dm3] X_2518213_SNP [dm6]	G	C	2.101e^-4	0.908	UPSTREAM trol INTRON trol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23003416	3R_23003416_DEL [dm3] 3R_27177694_DEL [dm6]	ATA	A	2.105e^-4	0.908	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003431	3R_23003431_SNP [dm3] 3R_27177709_SNP [dm6]	T	G	2.105e^-4	0.908	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23064105	3R_23064105_SNP [dm3] 3R_27238383_SNP [dm6]	T	G	2.106e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7843455	2L_7843455_SNP [dm3] 2L_7843455_SNP [dm6]	G	A	2.107e^-4	0.908	INTERGENIC
2L	5594005	2L_5594005_SNP [dm3] 2L_5594005_SNP [dm6]	G	C	2.130e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23505176	3R_23505176_SNP [dm3] 3R_27679454_SNP [dm6]	G	T	2.130e^-4	0.908	DOWNSTREAM CG5590 & 1 other INTRON CG12883	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23666208	3R_23666208_DEL [dm3] 3R_27840486_DEL [dm6]	TCTGTCTATATC...	T	2.131e^-4	0.908	INTRON CG34353
3L	16560265	3L_16560265_SNP [dm3] 3L_16567165_SNP [dm6]	C	T	2.135e^-4	0.908	NON_SYNONYMOUS_CODING CG43206 INTRON Mipp1
3L	10383681	3L_10383681_SNP [dm3] 3L_10390581_SNP [dm6]	G	C	2.140e^-4	0.908	INTERGENIC
3R	24968968	3R_24968968_SNP [dm3] 3R_29143246_SNP [dm6]	C	T	2.141e^-4	0.908	SYNONYMOUS_CODING CG14516	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	14811826	X_14811826_SNP [dm3] X_14917793_SNP [dm6]	G	C	2.145e^-4	0.908	NON_SYNONYMOUS_CODING Eo INTRON Flo2	TF binding site mE1_TFBS_cad
2L	9303768	2L_9303768_SNP [dm3] 2L_9303768_SNP [dm6]	C	G	2.147e^-4	0.908	DOWNSTREAM CR42844 INTERGENIC
2R	10373099	2R_10373099_SNP [dm3] 2R_14485594_SNP [dm6]	T	C	2.152e^-4	0.908	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10995643	2L_10995643_INS [dm3] 2L_10995643_INS [dm6]	A	AA	2.168e^-4	0.908	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3R	3895159	3R_3895159_DEL [dm3] 3R_8069437_DEL [dm6]	ATGTCAG	A	2.173e^-4	0.908	INTRON mAChR-B
2R	6439453	2R_6439453_SNP [dm3] 2R_10551948_SNP [dm6]	C	G	2.173e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14091586	X_14091586_SNP [dm3] X_14197553_SNP [dm6]	A	G	2.176e^-4	0.908	NON_SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12781661	X_12781661_SNP [dm3] X_12887628_SNP [dm6]	G	A	2.179e^-4	0.908	INTRON Pde9
3L	14477908	3L_14477908_SNP [dm3] 3L_14484808_SNP [dm6]	C	A	2.183e^-4	0.908	INTRON bbg
2R	19374978	2R_19374978_SNP [dm3] 2R_23487455_SNP [dm6]	A	G	2.193e^-4	0.908	INTRON CG43795
2L	9383814	2L_9383814_SNP [dm3] 2L_9383814_SNP [dm6]	G	C	2.194e^-4	0.908	INTRON Shawl
2L	9383819	2L_9383819_SNP [dm3] 2L_9383819_SNP [dm6]	T	A	2.194e^-4	0.908	INTRON Shawl
2L	15763259	2L_15763259_DEL [dm3] 2L_15763259_DEL [dm6]	AAGTCTGAATTAATGCCAAC...	A	2.197e^-4	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17982874	3L_17982874_SNP [dm3] 3L_17989774_SNP [dm6]	A	G	2.200e^-4	0.908	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23064056	3R_23064056_SNP [dm3] 3R_27238334_SNP [dm6]	T	C	2.204e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	12924016	3L_12924016_SNP [dm3] 3L_12930916_SNP [dm6]	G	T	2.209e^-4	0.908	INTERGENIC
3L	11421697	3L_11421697_SNP [dm3] 3L_11428597_SNP [dm6]	T	A	2.211e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	9058992	2L_9058992_SNP [dm3] 2L_9058992_SNP [dm6]	G	A	2.221e^-4	0.908	INTRON CG31708
3R	22584101	3R_22584101_SNP [dm3] 3R_26758379_SNP [dm6]	C	A	2.227e^-4	0.908	UPSTREAM CR45562 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15354692	3L_15354692_DEL [dm3] 3L_15361592_DEL [dm6]	TT	T	2.238e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	23003425	3R_23003425_SNP [dm3] 3R_27177703_SNP [dm6]	T	C	2.243e^-4	0.908	INTRON Ser	TF binding site mE1_TFBS_cad
2L	4179723	2L_4179723_DEL [dm3] 2L_4179723_DEL [dm6]	CCGAAAGCTGAAAAC...	C	2.244e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	5125514	2R_5125514_SNP [dm3] 2R_9238009_SNP [dm6]	C	T	2.244e^-4	0.908	SYNONYMOUS_CODING Cyp4p2 INTRON hig
3R	24475824	3R_24475824_SNP [dm3] 3R_28650102_SNP [dm6]	G	C	2.247e^-4	0.908	UTR_3_PRIME CG31050
2R	8875722	2R_8875722_SNP [dm3] 2R_12988217_SNP [dm6]	T	G	2.247e^-4	0.908	INTERGENIC
3R	14663621	3R_14663621_SNP [dm3] 3R_18837899_SNP [dm6]	A	G	2.250e^-4	0.908	INTRON CG18208
3L	15871750	3L_15871750_SNP [dm3] 3L_15878650_SNP [dm6]	A	T	2.252e^-4	0.908	INTRON pHCl
2L	6003786	2L_6003786_SNP [dm3] 2L_6003786_SNP [dm6]	C	T	2.253e^-4	0.908	SYNONYMOUS_CODING Gal UPSTREAM CR43866 DOWNSTREAM Tsp26A	TF binding site mE1_TFBS_cad
2L	15798953	2L_15798953_SNP [dm3] 2L_15798953_SNP [dm6]	T	G	2.253e^-4	0.908	INTERGENIC
3L	11869882	3L_11869882_SNP [dm3] 3L_11876782_SNP [dm6]	G	A	2.256e^-4	0.908	INTRON CG44837
3L	7003316	3L_7003316_SNP [dm3] 3L_7010216_SNP [dm6]	A	G	2.259e^-4	0.908	INTRON Mp
X	19615267	X_19615267_SNP [dm3] X_19721234_SNP [dm6]	T	A	2.261e^-4	0.908	INTRON CG12531
3R	18725869	3R_18725869_SNP [dm3] 3R_22900147_SNP [dm6]	G	C	2.261e^-4	0.908	INTRON klg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14314684	2R_14314684_SNP [dm3] 2R_18427179_SNP [dm6]	G	T	2.262e^-4	0.908	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG5174	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9204721	2L_9204721_SNP [dm3] 2L_9204721_SNP [dm6]	T	C	2.266e^-4	0.908	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	2.269e^-4	0.908	INTRON Oamb
3L	10174837	3L_10174837_SNP [dm3] 3L_10181737_SNP [dm6]	T	A	2.277e^-4	0.908	INTRON dpr10
3R	13747234	3R_13747234_SNP [dm3] 3R_17921512_SNP [dm6]	G	C	2.284e^-4	0.908	INTRON cpo
3L	10581692	3L_10581692_SNP [dm3] 3L_10588592_SNP [dm6]	T	A	2.285e^-4	0.908	INTRON A2bp1
X	3785615	X_3785615_DEL [dm3] X_3891582_DEL [dm6]	AA	A	2.286e^-4	0.908	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
2R	14553620	2R_14553620_SNP [dm3] 2R_18666115_SNP [dm6]	A	T	2.294e^-4	0.908	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	16649751	3L_16649751_SNP [dm3] 3L_16656651_SNP [dm6]	C	A	2.298e^-4	0.908	INTRON Baldspot
2L	7849694	2L_7849694_SNP [dm3] 2L_7849694_SNP [dm6]	C	T	2.304e^-4	0.908	INTRON CG14535
2R	13217738	2R_13217738_SNP [dm3] 2R_17330233_SNP [dm6]	C	T	2.311e^-4	0.908	INTRON mbl
2L	21010261	2L_21010261_SNP [dm3] 2L_21010261_SNP [dm6]	T	C	2.313e^-4	0.908	INTRON CG42238	TF binding site mE1_TFBS_cad
2L	4300461	2L_4300461_SNP [dm3] 2L_4300461_SNP [dm6]	A	G	2.323e^-4	0.908	INTRON tutl
X	2404213	X_2404213_SNP [dm3] X_2510180_SNP [dm6]	G	T	2.339e^-4	0.908	INTRON trol
2L	9503630	2L_9503630_SNP [dm3] 2L_9503630_SNP [dm6]	A	C	2.339e^-4	0.908	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad
2R	11064542	2R_11064542_SNP [dm3] 2R_15177037_SNP [dm6]	T	G	2.343e^-4	0.908	INTRON igl
X	7747856	X_7747856_SNP [dm3] X_7853823_SNP [dm6]	T	C	2.367e^-4	0.908	NON_SYNONYMOUS_CODING CG10920
3R	22245491	3R_22245491_SNP [dm3] 3R_26419769_SNP [dm6]	A	T	2.385e^-4	0.908	INTERGENIC
2R	2836126	2R_2836126_SNP [dm3] 2R_6948621_SNP [dm6]	G	T	2.386e^-4	0.908	UPSTREAM tRNA:K2:42Eb & 2 others DOWNSTREAM tRNA:K2:42Ed INTRON mim & 1 other	transposable element FlyBase
2R	9612174	2R_9612174_SNP [dm3] 2R_13724669_SNP [dm6]	T	A	2.390e^-4	0.908	INTRON fas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19942480	2R_19942480_SNP [dm3] 2R_24054957_SNP [dm6]	G	T	2.391e^-4	0.908	UTR_5_PRIME ppk29 UPSTREAM CG13563
3L	19647937	3L_19647937_SNP [dm3] 3L_19654837_SNP [dm6]	G	T	2.391e^-4	0.908	INTRON tey
3R	3988311	3R_3988311_DEL [dm3] 3R_8162589_DEL [dm6]	CCCAACTCC	C	2.400e^-4	0.908	INTRON grn
2L	15736788	2L_15736788_SNP [dm3] 2L_15736788_SNP [dm6]	G	A	2.402e^-4	0.908	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10938725	3L_10938725_SNP [dm3] 3L_10945625_SNP [dm6]	G	A	2.424e^-4	0.908	DOWNSTREAM CG34050 INTERGENIC
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	2.440e^-4	0.908	INTERGENIC
3L	12986197	3L_12986197_SNP [dm3] 3L_12993097_SNP [dm6]	A	T	2.456e^-4	0.908	INTERGENIC
2R	8440284	2R_8440284_SNP [dm3] 2R_12552779_SNP [dm6]	A	T	2.457e^-4	0.908	INTRON fra
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	2.470e^-4	0.908	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9765367	3L_9765367_SNP [dm3] 3L_9772267_SNP [dm6]	G	A	2.492e^-4	0.908	INTRON CG8177
2L	15763171	2L_15763171_SNP [dm3] 2L_15763171_SNP [dm6]	C	T	2.494e^-4	0.908	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18058687	3R_18058687_SNP [dm3] 3R_22232965_SNP [dm6]	A	G	2.502e^-4	0.908	INTRON SKIP
3L	19937407	3L_19937407_SNP [dm3] 3L_19944307_SNP [dm6]	T	C	2.509e^-4	0.908	INTRON Ac76E
2L	15763104	2L_15763104_SNP [dm3] 2L_15763104_SNP [dm6]	C	A	2.510e^-4	0.908	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18631077	2R_18631077_DEL [dm3] 2R_22743572_DEL [dm6]	TT	T	2.512e^-4	0.908	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15761906	2L_15761906_SNP [dm3] 2L_15761906_SNP [dm6]	C	T	2.514e^-4	0.908	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
3R	18077474	3R_18077474_INS [dm3] 3R_22251752_INS [dm6]	T	TT	2.527e^-4	0.908	INTRON SKIP
3L	15806294	3L_15806294_SNP [dm3] 3L_15813194_SNP [dm6]	A	G	2.527e^-4	0.908	INTRON fwe
X	9116599	X_9116599_SNP [dm3] X_9222566_SNP [dm6]	C	T	2.538e^-4	0.908	INTRON t
2L	7187631	2L_7187631_SNP [dm3] 2L_7187631_SNP [dm6]	C	T	2.543e^-4	0.908	SYNONYMOUS_CODING CG4496
3R	23064060	3R_23064060_DEL [dm3] 3R_27238338_DEL [dm6]	TACATTTTAGAATAG...	T	2.551e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9181896	3L_9181896_SNP [dm3] 3L_9188796_SNP [dm6]	T	C	2.559e^-4	0.908	INTERGENIC
3L	8163677	3L_8163677_SNP [dm3] 3L_8170577_SNP [dm6]	A	T	2.562e^-4	0.908	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	15763356	2L_15763356_INS [dm3] 2L_15763356_INS [dm6]	T	TA	2.570e^-4	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8581028	2R_8581028_SNP [dm3] 2R_12693523_SNP [dm6]	T	G	2.585e^-4	0.908	UPSTREAM CG8768 INTERGENIC
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	2.609e^-4	0.908	INTRON mAChR-B
2L	7849716	2L_7849716_SNP [dm3] 2L_7849716_SNP [dm6]	G	T	2.613e^-4	0.908	INTRON CG14535
2R	10373100	2R_10373100_SNP [dm3] 2R_14485595_SNP [dm6]	T	C	2.617e^-4	0.908	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17015525	2R_17015525_SNP [dm3] 2R_21128020_SNP [dm6]	G	C	2.620e^-4	0.908	UPSTREAM mago & 1 other INTRON CG4050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1285929	3L_1285929_SNP [dm3] 3L_1285929_SNP [dm6]	A	G	2.626e^-4	0.908	INTRON CG32333
X	7893476	X_7893476_SNP [dm3] X_7999443_SNP [dm6]	T	C	2.641e^-4	0.908	NON_SYNONYMOUS_CODING Tbh
3R	25550415	3R_25550415_SNP [dm3] 3R_29724693_SNP [dm6]	T	C	2.658e^-4	0.908	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	15193070	2R_15193070_SNP [dm3] 2R_19305565_SNP [dm6]	C	G	2.663e^-4	0.908	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3R	5439976	3R_5439976_SNP [dm3] 3R_9614254_SNP [dm6]	T	C	2.669e^-4	0.908	INTRON CG8312	TF binding site mE1_TFBS_cad
3R	3891824	3R_3891824_SNP [dm3] 3R_8066102_SNP [dm6]	C	G	2.670e^-4	0.908	INTRON mAChR-B
X	16544286	X_16544286_SNP [dm3] X_16650253_SNP [dm6]	T	C	2.674e^-4	0.908	UTR_3_PRIME mthl1 DOWNSTREAM mthl1
3R	16816496	3R_16816496_DEL [dm3] 3R_20990774_DEL [dm6]	CAAAAGGATTGTGGAGTGAG...	C	2.682e^-4	0.908	INTRON Calx
2R	18838360	2R_18838360_SNP [dm3] 2R_22950837_SNP [dm6]	T	C	2.686e^-4	0.908	DOWNSTREAM CR32835 INTERGENIC
X	7882441	X_7882441_SNP [dm3] X_7988408_SNP [dm6]	A	G	2.690e^-4	0.908	INTERGENIC
3R	7630056	3R_7630056_SNP [dm3] 3R_11804334_SNP [dm6]	A	C	2.695e^-4	0.908	UTR_5_PRIME ClC-a INTRON ClC-a
3L	17982949	3L_17982949_SNP [dm3] 3L_17989849_SNP [dm6]	G	T	2.700e^-4	0.908	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17456071	3L_17456071_SNP [dm3] 3L_17462971_SNP [dm6]	A	G	2.703e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16988246	X_16988246_SNP [dm3] X_17094213_SNP [dm6]	T	C	2.704e^-4	0.908	INTRON CG16700 & 1 other
3R	20379623	3R_20379623_SNP [dm3] 3R_24553901_SNP [dm6]	C	A	2.704e^-4	0.908	INTRON Esyt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22232355	3R_22232355_SNP [dm3] 3R_26406633_SNP [dm6]	T	C	2.706e^-4	0.908	INTERGENIC
X	4880130	X_4880130_SNP [dm3] X_4986097_SNP [dm6]	C	A	2.710e^-4	0.908	INTRON CR44833	regulatory region REDfly_CRMs
2R	14788332	2R_14788332_SNP [dm3] 2R_18900827_SNP [dm6]	T	A	2.718e^-4	0.908	INTRON sano
X	16654580	X_16654580_SNP [dm3] X_16760547_SNP [dm6]	G	A	2.719e^-4	0.908	INTRON if	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10418773	2R_10418773_SNP [dm3] 2R_14531268_SNP [dm6]	G	T	2.726e^-4	0.908	INTRON ttv
X	12905483	X_12905483_SNP [dm3] X_13011450_SNP [dm6]	G	A	2.726e^-4	0.908	INTRON rad
2L	15763329	2L_15763329_SNP [dm3] 2L_15763329_SNP [dm6]	A	G	2.732e^-4	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7187041	2L_7187041_SNP [dm3] 2L_7187041_SNP [dm6]	G	A	2.741e^-4	0.908	NON_SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
3L	15634348	3L_15634348_SNP [dm3] 3L_15641248_SNP [dm6]	A	T	2.744e^-4	0.908	INTRON comm3
2R	16842277	2R_16842277_SNP [dm3] 2R_20954772_SNP [dm6]	A	G	2.745e^-4	0.908	UTR_3_PRIME hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14765761	2L_14765761_SNP [dm3] 2L_14765761_SNP [dm6]	C	T	2.754e^-4	0.908	UPSTREAM CG4701 INTERGENIC
2R	14477958	2R_14477958_SNP [dm3] 2R_18590453_SNP [dm6]	T	G	2.755e^-4	0.908	INTRON GEFmeso
2R	8862642	2R_8862642_SNP [dm3] 2R_12975137_SNP [dm6]	A	G	2.757e^-4	0.908	INTRON Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12933469	3L_12933469_SNP [dm3] 3L_12940369_SNP [dm6]	G	C	2.760e^-4	0.908	INTERGENIC
2R	9822214	2R_9822214_SNP [dm3] 2R_13934709_SNP [dm6]	G	A	2.776e^-4	0.908	INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2R	10373065	2R_10373065_SNP [dm3] 2R_14485560_SNP [dm6]	A	C	2.781e^-4	0.908	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17948829	2L_17948829_SNP [dm3] 2L_17948829_SNP [dm6]	A	T	2.792e^-4	0.908	EXON CR44398
3L	7754193	3L_7754193_SNP [dm3] 3L_7761093_SNP [dm6]	G	A	2.792e^-4	0.908	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2R	19133375	2R_19133375_SNP [dm3] 2R_23245852_SNP [dm6]	C	G	2.804e^-4	0.908	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
2L	5726945	2L_5726945_SNP [dm3] 2L_5726945_SNP [dm6]	C	A	2.806e^-4	0.908	UTR_3_PRIME CG14006 DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_chinmo
3L	17093022	3L_17093022_SNP [dm3] 3L_17099922_SNP [dm6]	G	C	2.808e^-4	0.908	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22232340	3R_22232340_SNP [dm3] 3R_26406618_SNP [dm6]	A	T	2.813e^-4	0.908	INTERGENIC
3R	9616089	3R_9616089_SNP [dm3] 3R_13790367_SNP [dm6]	G	A	2.815e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15394497	2R_15394497_SNP [dm3] 2R_19506992_SNP [dm6]	C	G	2.818e^-4	0.908	UPSTREAM tRNA:H:56E INTERGENIC
3L	7995499	3L_7995499_SNP [dm3] 3L_8002399_SNP [dm6]	A	T	2.820e^-4	0.908	INTRON nmo
X	14262921	X_14262921_SNP [dm3] X_14368888_SNP [dm6]	A	C	2.822e^-4	0.908	INTRON dpr8
3L	2409653	3L_2409653_SNP [dm3] 3L_2409653_SNP [dm6]	C	T	2.823e^-4	0.908	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	16226436	X_16226436_SNP [dm3] X_16332403_SNP [dm6]	A	C	2.832e^-4	0.908	UPSTREAM CG9921 INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8875316	2R_8875316_SNP [dm3] 2R_12987811_SNP [dm6]	A	T	2.835e^-4	0.908	INTERGENIC
X	19875298	X_19875298_DEL [dm3] X_19981265_DEL [dm6]	ATGGCTTGTAACTCTTTGGT...	A	2.838e^-4	0.908	INTERGENIC
3L	11923458	3L_11923458_SNP [dm3] 3L_11930358_SNP [dm6]	C	T	2.855e^-4	0.908	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
2R	16451648	2R_16451648_SNP [dm3] 2R_20564143_SNP [dm6]	A	G	2.856e^-4	0.908	SYNONYMOUS_CODING qsm
X	4273775	X_4273775_SNP [dm3] X_4379742_SNP [dm6]	C	G	2.857e^-4	0.908	INTERGENIC
3R	5705681	3R_5705681_SNP [dm3] 3R_9879959_SNP [dm6]	G	A	2.862e^-4	0.908	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	3138349	3R_3138349_SNP [dm3] 3R_7312627_SNP [dm6]	C	A	2.875e^-4	0.908	EXON CR44334	TF binding site BDTNP1_TFBS_dl
3L	18822407	3L_18822407_SNP [dm3] 3L_18829307_SNP [dm6]	G	T	2.884e^-4	0.908	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3L	7168864	3L_7168864_SNP [dm3] 3L_7175764_SNP [dm6]	C	G	2.887e^-4	0.908	INTRON Dscam2
3L	14428901	3L_14428901_SNP [dm3] 3L_14435801_SNP [dm6]	A	C	2.893e^-4	0.908	INTRON bbg
3L	1754393	3L_1754393_DEL [dm3] 3L_1754393_DEL [dm6]	AATGGAGA	A	2.896e^-4	0.908	UTR_5_PRIME Cht2 INTRON Cht2
3L	14292948	3L_14292948_SNP [dm3] 3L_14299848_SNP [dm6]	G	A	2.904e^-4	0.908	INTRON fz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22786865	3L_22786865_SNP [dm3] 3L_22793765_SNP [dm6]	T	C	2.905e^-4	0.908	UTR_3_PRIME jim
3L	1293770	3L_1293770_SNP [dm3] 3L_1293770_SNP [dm6]	T	A	2.908e^-4	0.908	INTRON CG32333
2L	9720844	2L_9720844_SNP [dm3] 2L_9720844_SNP [dm6]	G	T	2.915e^-4	0.908	INTRON Nckx30C
2R	9310791	2R_9310791_SNP [dm3] 2R_13423286_SNP [dm6]	A	C	2.920e^-4	0.908	SYNONYMOUS_CODING CG30060 INTRON CG42321
X	15099311	X_15099311_SNP [dm3] X_15205278_SNP [dm6]	C	G	2.923e^-4	0.908	DOWNSTREAM CG32588 INTERGENIC
X	15099357	X_15099357_SNP [dm3] X_15205324_SNP [dm6]	C	T	2.923e^-4	0.908	DOWNSTREAM CG32588 INTERGENIC
2L	4219083	2L_4219083_SNP [dm3] 2L_4219083_SNP [dm6]	A	T	2.941e^-4	0.908	INTRON ft	TF binding site mE1_TFBS_HSA
X	17664374	X_17664374_SNP [dm3] X_17770341_SNP [dm6]	G	A	2.948e^-4	0.908	INTRON unc-4
3L	17028409	3L_17028409_SNP [dm3] 3L_17035309_SNP [dm6]	A	T	2.952e^-4	0.908	UPSTREAM beg INTERGENIC
3R	9962882	3R_9962882_SNP [dm3] 3R_14137160_SNP [dm6]	A	G	2.960e^-4	0.908	INTERGENIC
3L	10621765	3L_10621765_SNP [dm3] 3L_10628665_SNP [dm6]	A	G	2.965e^-4	0.908	UPSTREAM CG14151 DOWNSTREAM CG42536 INTERGENIC	TF binding site mE1_TFBS_inv
2L	16235303	2L_16235303_DEL [dm3] 2L_16235303_DEL [dm6]	TTT	GG	2.967e^-4	0.908	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19875236	X_19875236_SNP [dm3] X_19981203_SNP [dm6]	C	A	2.969e^-4	0.908	INTERGENIC
X	13009547	X_13009547_SNP [dm3] X_13115514_SNP [dm6]	T	C	2.974e^-4	0.908	INTRON CG42237
2L	10996675	2L_10996675_SNP [dm3] 2L_10996675_SNP [dm6]	T	G	2.975e^-4	0.908	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	19880511	2L_19880511_SNP [dm3] 2L_19880511_SNP [dm6]	G	A	2.976e^-4	0.908	INTRON sick
2L	9528724	2L_9528724_SNP [dm3] 2L_9528724_SNP [dm6]	C	T	2.981e^-4	0.908	NON_SYNONYMOUS_CODING CG31883 INTRON Oatp30B
2L	9378834	2L_9378834_SNP [dm3] 2L_9378834_SNP [dm6]	A	G	2.983e^-4	0.908	INTRON Shawl
2L	13993678	2L_13993678_SNP [dm3] 2L_13993678_SNP [dm6]	A	T	2.994e^-4	0.908	UTR_5_PRIME rk
2L	5997165	2L_5997165_SNP [dm3] 2L_5997165_SNP [dm6]	A	G	2.995e^-4	0.908	UPSTREAM lid INTRON lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8988360	X_8988360_SNP [dm3] X_9094327_SNP [dm6]	A	G	2.995e^-4	0.908	SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	7536284	2L_7536284_SNP [dm3] 2L_7536284_SNP [dm6]	G	A	2.999e^-4	0.908	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
2L	6989665	2L_6989665_SNP [dm3] 2L_6989665_SNP [dm6]	A	T	3.000e^-4	0.908	INTRON uif
X	6495896	X_6495896_SNP [dm3] X_6601863_SNP [dm6]	A	C	3.000e^-4	0.908	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	5965629	3R_5965629_SNP [dm3] 3R_10139907_SNP [dm6]	A	T	3.001e^-4	0.908	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16421885	2L_16421885_SNP [dm3] 2L_16421885_SNP [dm6]	C	A	3.001e^-4	0.908	INTRON CG5888	TF binding site BDTNP1_TFBS_dl
3R	14327168	3R_14327168_SNP [dm3] 3R_18501446_SNP [dm6]	G	A	3.003e^-4	0.908	INTRON fru	TF binding site BDTNP1_TFBS_da
X	7747848	X_7747848_SNP [dm3] X_7853815_SNP [dm6]	G	T	3.005e^-4	0.908	SYNONYMOUS_CODING CG10920
X	6105106	X_6105106_SNP [dm3] X_6211073_SNP [dm6]	C	T	3.020e^-4	0.908	INTERGENIC
X	6105107	X_6105107_SNP [dm3] X_6211074_SNP [dm6]	A	T	3.020e^-4	0.908	INTERGENIC
X	2266932	X_2266932_SNP [dm3] X_2372899_SNP [dm6]	C	T	3.025e^-4	0.908	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo
2L	9164895	2L_9164895_SNP [dm3] 2L_9164895_SNP [dm6]	C	T	3.031e^-4	0.908	DOWNSTREAM CG9586 INTRON CG13108	TF binding site mE1_TFBS_cad
2L	9164900	2L_9164900_SNP [dm3] 2L_9164900_SNP [dm6]	G	A	3.031e^-4	0.908	DOWNSTREAM CG9586 INTRON CG13108	TF binding site mE1_TFBS_cad
X	17664612	X_17664612_SNP [dm3] X_17770579_SNP [dm6]	A	C	3.034e^-4	0.908	INTRON unc-4
3R	5119061	3R_5119061_SNP [dm3] 3R_9293339_SNP [dm6]	A	G	3.035e^-4	0.908	DOWNSTREAM CG8861 INTERGENIC
2R	9262102	2R_9262102_SNP [dm3] 2R_13374597_SNP [dm6]	G	A	3.047e^-4	0.908	INTERGENIC
3L	15871587	3L_15871587_SNP [dm3] 3L_15878487_SNP [dm6]	A	T	3.048e^-4	0.908	INTRON pHCl
3R	25595202	3R_25595202_SNP [dm3] 3R_29769480_SNP [dm6]	G	A	3.048e^-4	0.908	INTRON kay
3R	23064011	3R_23064011_SNP [dm3] 3R_27238289_SNP [dm6]	C	A	3.056e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	18993426	X_18993426_SNP [dm3] X_19099393_SNP [dm6]	G	C	3.065e^-4	0.908	INTERGENIC
2R	10164898	2R_10164898_DEL [dm3] 2R_14277393_DEL [dm6]	CGAAAGCAAACACGATAAAT...	C	3.065e^-4	0.908	UTR_5_PRIME Ih
3L	17019565	3L_17019565_SNP [dm3] 3L_17026465_SNP [dm6]	A	G	3.070e^-4	0.908	NON_SYNONYMOUS_CODING Fit2	TF binding site mE1_TFBS_cad
2R	6703384	2R_6703384_SNP [dm3] 2R_10815879_SNP [dm6]	G	A	3.073e^-4	0.908	DOWNSTREAM dgo & 1 other INTERGENIC
3L	15014618	3L_15014618_SNP [dm3] 3L_15021518_SNP [dm6]	G	A	3.073e^-4	0.908	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8510360	2L_8510360_SNP [dm3] 2L_8510360_SNP [dm6]	T	A	3.077e^-4	0.908	INTRON CG13096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7753885	3L_7753885_SNP [dm3] 3L_7760785_SNP [dm6]	G	A	3.089e^-4	0.908	UPSTREAM Hn INTRON Hn
3L	9367296	3L_9367296_SNP [dm3] 3L_9374196_SNP [dm6]	T	A	3.094e^-4	0.908	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	13550521	3L_13550521_SNP [dm3] 3L_13557421_SNP [dm6]	T	G	3.104e^-4	0.908	UPSTREAM CR45178 INTRON bru-3
2R	11044645	2R_11044645_SNP [dm3] 2R_15157140_SNP [dm6]	T	A	3.105e^-4	0.908	INTRON igl
X	12866005	X_12866005_SNP [dm3] X_12971972_SNP [dm6]	C	T	3.108e^-4	0.908	SYNONYMOUS_CODING CG15721 INTRON CR43636
3R	10122707	3R_10122707_DEL [dm3] 3R_14296985_DEL [dm6]	AACTACAGAAA...	A	3.120e^-4	0.908	INTRON CG12207
2L	20630889	2L_20630889_SNP [dm3] 2L_20630889_SNP [dm6]	G	T	3.127e^-4	0.908	INTERGENIC
3L	14907995	3L_14907995_SNP [dm3] 3L_14914895_SNP [dm6]	G	C	3.127e^-4	0.908	INTRON DCX-EMAP
3L	20031355	3L_20031355_SNP [dm3] 3L_20038255_SNP [dm6]	A	G	3.128e^-4	0.908	INTERGENIC
2L	9204718	2L_9204718_SNP [dm3] 2L_9204718_SNP [dm6]	C	T	3.131e^-4	0.908	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25560830	3R_25560830_SNP [dm3] 3R_29735108_SNP [dm6]	T	C	3.164e^-4	0.908	UTR_3_PRIME Kul DOWNSTREAM CG7601
3R	8094600	3R_8094600_SNP [dm3] 3R_12268878_SNP [dm6]	T	C	3.172e^-4	0.908	INTRON svp EXON CR44039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13179361	3L_13179361_SNP [dm3] 3L_13186261_SNP [dm6]	G	A	3.176e^-4	0.908	INTERGENIC
X	11269955	X_11269955_SNP [dm3] X_11375922_SNP [dm6]	T	C	3.183e^-4	0.908	SYNONYMOUS_CODING dlg1 INTRON dlg1
X	6105094	X_6105094_SNP [dm3] X_6211061_SNP [dm6]	G	A	3.185e^-4	0.908	INTERGENIC
3L	18363406	3L_18363406_SNP [dm3] 3L_18370306_SNP [dm6]	T	G	3.206e^-4	0.908	INTERGENIC
X	12138945	X_12138945_SNP [dm3] X_12244912_SNP [dm6]	T	A	3.215e^-4	0.908	INTRON Ten-a
2R	18330986	2R_18330986_SNP [dm3] 2R_22443481_SNP [dm6]	G	T	3.219e^-4	0.908	INTERGENIC
3L	11949031	3L_11949031_SNP [dm3] 3L_11955931_SNP [dm6]	T	C	3.228e^-4	0.908	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	11949102	3L_11949102_SNP [dm3] 3L_11956002_SNP [dm6]	C	T	3.228e^-4	0.908	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3R	17743865	3R_17743865_SNP [dm3] 3R_21918143_SNP [dm6]	T	G	3.237e^-4	0.908	INTERGENIC
3L	2582532	3L_2582532_SNP [dm3] 3L_2582532_SNP [dm6]	G	C	3.247e^-4	0.908	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14491808	2R_14491808_SNP [dm3] 2R_18604303_SNP [dm6]	C	T	3.251e^-4	0.908	INTRON GEFmeso	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14428908	3L_14428908_SNP [dm3] 3L_14435808_SNP [dm6]	T	C	3.259e^-4	0.908	INTRON bbg
2R	6861858	2R_6861858_SNP [dm3] 2R_10974353_SNP [dm6]	A	G	3.267e^-4	0.908	INTERGENIC
3L	9183508	3L_9183508_SNP [dm3] 3L_9190408_SNP [dm6]	G	T	3.269e^-4	0.908	INTERGENIC
2L	6514626	2L_6514626_SNP [dm3] 2L_6514626_SNP [dm6]	G	A	3.280e^-4	0.908	INTRON CG31637
X	12908402	X_12908402_SNP [dm3] X_13014369_SNP [dm6]	T	A	3.283e^-4	0.908	INTRON rad
X	12103916	X_12103916_DEL [dm3] X_12209883_DEL [dm6]	AA	A	3.285e^-4	0.908	INTRON Ten-a
2R	16679499	2R_16679499_SNP [dm3] 2R_20791994_SNP [dm6]	A	G	3.292e^-4	0.908	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677 & 1 other
3L	10766896	3L_10766896_SNP [dm3] 3L_10773796_SNP [dm6]	C	T	3.302e^-4	0.908	DOWNSTREAM CG43245 INTERGENIC
3R	16522090	3R_16522090_INS [dm3] 3R_20696368_INS [dm6]	G	GAGAGAAAAG	3.308e^-4	0.908	INTRON Oamb
X	14137401	X_14137401_SNP [dm3] X_14243368_SNP [dm6]	T	C	3.310e^-4	0.908	UPSTREAM CG32599 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12119957	3L_12119957_SNP [dm3] 3L_12126857_SNP [dm6]	G	A	3.313e^-4	0.908	NON_SYNONYMOUS_CODING Ir68b	TF binding site mE1_TFBS_chinmo
2L	8260670	2L_8260670_SNP [dm3] 2L_8260670_SNP [dm6]	T	A	3.313e^-4	0.908	INTRON Btk29A
3L	3580949	3L_3580949_SNP [dm3] 3L_3580949_SNP [dm6]	G	A	3.314e^-4	0.908	INTRON Eip63E
X	17663745	X_17663745_SNP [dm3] X_17769712_SNP [dm6]	G	T	3.316e^-4	0.908	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
3R	3926090	3R_3926090_SNP [dm3] 3R_8100368_SNP [dm6]	G	A	3.316e^-4	0.908	SYNONYMOUS_CODING CG7900	TF binding site BDTNP1_TFBS_bcd
3R	3866550	3R_3866550_SNP [dm3] 3R_8040828_SNP [dm6]	A	C	3.318e^-4	0.908	UPSTREAM CG43060 INTERGENIC
3R	16397468	3R_16397468_SNP [dm3] 3R_20571746_SNP [dm6]	G	A	3.326e^-4	0.908	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18083614	3R_18083614_SNP [dm3] 3R_22257892_SNP [dm6]	C	A	3.328e^-4	0.908	INTRON SKIP
2R	17082373	2R_17082373_SNP [dm3] 2R_21194868_SNP [dm6]	C	T	3.348e^-4	0.908	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19357878	X_19357878_SNP [dm3] X_19463845_SNP [dm6]	C	T	3.358e^-4	0.908	INTRON kek5
3R	23378460	3R_23378460_SNP [dm3] 3R_27552738_SNP [dm6]	G	A	3.364e^-4	0.908	INTRON Klp98A	TF binding site mE1_TFBS_cad
2R	12466448	2R_12466448_SNP [dm3] 2R_16578943_SNP [dm6]	G	A	3.366e^-4	0.908	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	16545592	2R_16545592_SNP [dm3] 2R_20658087_SNP [dm6]	A	G	3.366e^-4	0.908	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
3L	17605709	3L_17605709_SNP [dm3] 3L_17612609_SNP [dm6]	A	C	3.369e^-4	0.908	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	21499444	3L_21499444_SNP [dm3] 3L_21506344_SNP [dm6]	C	A	3.372e^-4	0.908	INTRON Glg1	TF binding site mE1_TFBS_chinmo
X	744238	X_744238_SNP [dm3] X_850205_SNP [dm6]	C	T	3.388e^-4	0.908	INTRON CG43867
X	10325930	X_10325930_SNP [dm3] X_10431897_SNP [dm6]	C	T	3.399e^-4	0.908	DOWNSTREAM CG12640 INTRON CG32683
X	3211358	X_3211358_SNP [dm3] X_3317325_SNP [dm6]	C	T	3.405e^-4	0.908	UPSTREAM CG10793 INTRON dnc & 1 other
X	17303938	X_17303938_SNP [dm3] X_17409905_SNP [dm6]	T	C	3.410e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18116489	3R_18116489_SNP [dm3] 3R_22290767_SNP [dm6]	C	A	3.414e^-4	0.908	INTRON SKIP
X	3140939	X_3140939_SNP [dm3] X_3246906_SNP [dm6]	A	G	3.416e^-4	0.908	INTRON dnc
2R	16189193	2R_16189193_SNP [dm3] 2R_20301688_SNP [dm6]	T	C	3.423e^-4	0.908	UPSTREAM CR44640 INTERGENIC
3R	24475735	3R_24475735_SNP [dm3] 3R_28650013_SNP [dm6]	G	A	3.424e^-4	0.908	UTR_3_PRIME CG31050 DOWNSTREAM CG31050
3L	17402293	3L_17402293_SNP [dm3] 3L_17409193_SNP [dm6]	G	A	3.426e^-4	0.908	INTRON blot	TF binding site mE1_TFBS_cad
3L	11957425	3L_11957425_SNP [dm3] 3L_11964325_SNP [dm6]	C	G	3.428e^-4	0.908	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15090489	2L_15090489_SNP [dm3] 2L_15090489_SNP [dm6]	T	A	3.435e^-4	0.908	INTRON CG15270
2R	16538725	2R_16538725_SNP [dm3] 2R_20651220_SNP [dm6]	A	G	3.437e^-4	0.908	INTRON Lrt
2R	13851502	2R_13851502_SNP [dm3] 2R_17963997_SNP [dm6]	T	C	3.440e^-4	0.908	INTERGENIC
3L	7721784	3L_7721784_SNP [dm3] 3L_7728684_SNP [dm6]	G	T	3.453e^-4	0.908	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	7721787	3L_7721787_SNP [dm3] 3L_7728687_SNP [dm6]	A	G	3.453e^-4	0.908	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	8695951	2L_8695951_SNP [dm3] 2L_8695951_SNP [dm6]	A	C	3.461e^-4	0.908	INTRON Hnf4
2L	7849696	2L_7849696_SNP [dm3] 2L_7849696_SNP [dm6]	T	G	3.479e^-4	0.908	INTRON CG14535
2L	18627326	2L_18627326_MNP [dm3] 2L_18627326_MNP [dm6]	CTC	GCA	3.482e^-4	0.908	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1754307	3L_1754307_SNP [dm3] 3L_1754307_SNP [dm6]	C	T	3.492e^-4	0.908	SYNONYMOUS_CODING Cht2
2R	14315849	2R_14315849_SNP [dm3] 2R_18428344_SNP [dm6]	C	A	3.493e^-4	0.908	NON_SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12930842	3L_12930842_INS [dm3] 3L_12937742_INS [dm6]	T	TTT	3.493e^-4	0.908	INTERGENIC
3R	22232497	3R_22232497_SNP [dm3] 3R_26406775_SNP [dm6]	T	C	3.499e^-4	0.908	INTERGENIC
X	19027377	X_19027377_SNP [dm3] X_19133344_SNP [dm6]	T	C	3.503e^-4	0.908	EXON CR45711
X	5946369	X_5946369_SNP [dm3] X_6052336_SNP [dm6]	T	A	3.506e^-4	0.908	INTRON CG5921
2L	15763338	2L_15763338_INS [dm3] 2L_15763338_INS [dm6]	T	TGGTTATAA	3.508e^-4	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	17279229	X_17279229_SNP [dm3] X_17385196_SNP [dm6]	A	C	3.509e^-4	0.908	INTERGENIC
2L	9281728	2L_9281728_SNP [dm3] 2L_9281728_SNP [dm6]	T	C	3.513e^-4	0.908	INTRON Ggamma30A
2L	6715215	2L_6715215_SNP [dm3] 2L_6715215_SNP [dm6]	G	A	3.514e^-4	0.908	UTR_5_PRIME AkhR INTRON AkhR
2R	6740817	2R_6740817_SNP [dm3] 2R_10853312_SNP [dm6]	A	T	3.517e^-4	0.908	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4454975	2L_4454975_SNP [dm3] 2L_4454975_SNP [dm6]	C	A	3.525e^-4	0.908	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15576870	X_15576870_SNP [dm3] X_15682837_SNP [dm6]	T	A	3.530e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9051178	2L_9051178_SNP [dm3] 2L_9051178_SNP [dm6]	T	G	3.530e^-4	0.908	DOWNSTREAM CG31708 INTERGENIC
3R	9296974	3R_9296974_SNP [dm3] 3R_13471252_SNP [dm6]	T	A	3.534e^-4	0.908	INTERGENIC
3R	21672884	3R_21672884_SNP [dm3] 3R_25847162_SNP [dm6]	T	G	3.539e^-4	0.908	UPSTREAM CR45657 DOWNSTREAM CR45656 & 2 others INTERGENIC
3R	18855714	3R_18855714_SNP [dm3] 3R_23029992_SNP [dm6]	G	A	3.540e^-4	0.908	INTERGENIC	regulatory region REDfly_CRMs
3L	15803114	3L_15803114_SNP [dm3] 3L_15810014_SNP [dm6]	C	G	3.546e^-4	0.908	DOWNSTREAM fwe & 1 other INTERGENIC
2L	10076394	2L_10076394_SNP [dm3] 2L_10076394_SNP [dm6]	A	T	3.560e^-4	0.908	INTRON CG44153
3L	11421706	3L_11421706_DEL [dm3] 3L_11428606_DEL [dm6]	AA	A	3.564e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	19695682	3L_19695682_SNP [dm3] 3L_19702582_SNP [dm6]	A	T	3.569e^-4	0.908	INTRON serp	TF binding site mE1_TFBS_cad
2R	16749729	2R_16749729_SNP [dm3] 2R_20862224_SNP [dm6]	C	A	3.581e^-4	0.908	INTERGENIC
3R	10571058	3R_10571058_SNP [dm3] 3R_14745336_SNP [dm6]	C	G	3.584e^-4	0.908	DOWNSTREAM smp-30 INTRON jvl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	15763235	2L_15763235_MNP [dm3] 2L_15763235_MNP [dm6]	AAAT	CTTA	3.586e^-4	0.908	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17977943	2R_17977943_DEL [dm3] 2R_22090438_DEL [dm6]	CAAGAGTCA	C	3.591e^-4	0.908	FRAME_SHIFT CG43393 DOWNSTREAM CG44163
3L	15867267	3L_15867267_SNP [dm3] 3L_15874167_SNP [dm6]	T	G	3.594e^-4	0.908	INTRON pHCl
3L	11923475	3L_11923475_SNP [dm3] 3L_11930375_SNP [dm6]	G	A	3.595e^-4	0.908	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13202531	3R_13202531_SNP [dm3] 3R_17376809_SNP [dm6]	C	T	3.597e^-4	0.908	INTRON Brf
2R	10468055	2R_10468055_SNP [dm3] 2R_14580550_SNP [dm6]	A	T	3.603e^-4	0.908	INTRON ttv
3R	25550391	3R_25550391_SNP [dm3] 3R_29724669_SNP [dm6]	C	T	3.605e^-4	0.908	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	25909492	3R_25909492_SNP [dm3] 3R_30083770_SNP [dm6]	G	A	3.607e^-4	0.908	INTRON sima
3L	18272201	3L_18272201_SNP [dm3] 3L_18279101_SNP [dm6]	C	T	3.610e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	4665164	3L_4665164_SNP [dm3] 3L_4665164_SNP [dm6]	A	T	3.613e^-4	0.908	DOWNSTREAM CG32236 INTRON axo
3L	12933602	3L_12933602_SNP [dm3] 3L_12940502_SNP [dm6]	A	C	3.618e^-4	0.908	INTERGENIC
3L	15802498	3L_15802498_DEL [dm3] 3L_15809398_DEL [dm6]	AGA	A	3.625e^-4	0.908	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2L	9051929	2L_9051929_SNP [dm3] 2L_9051929_SNP [dm6]	G	T	3.632e^-4	0.908	UTR_3_PRIME CG31708
3R	6999693	3R_6999693_SNP [dm3] 3R_11173971_SNP [dm6]	C	T	3.632e^-4	0.908	SYNONYMOUS_CODING Ugt86Dj
2R	6861852	2R_6861852_SNP [dm3] 2R_10974347_SNP [dm6]	T	G	3.635e^-4	0.908	INTERGENIC
2L	7846274	2L_7846274_SNP [dm3] 2L_7846274_SNP [dm6]	A	G	3.642e^-4	0.908	UTR_3_PRIME CG14535
3R	16711835	3R_16711835_SNP [dm3] 3R_20886113_SNP [dm6]	G	C	3.642e^-4	0.908	INTERGENIC
2R	8873032	2R_8873032_SNP [dm3] 2R_12985527_SNP [dm6]	A	G	3.643e^-4	0.908	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	3939424	3R_3939424_SNP [dm3] 3R_8113702_SNP [dm6]	C	T	3.685e^-4	0.908	INTRON puc EXON CR44331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	621049	3L_621049_SNP [dm3] 3L_621049_SNP [dm6]	G	A	3.690e^-4	0.908	UTR_3_PRIME CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	10356490	3L_10356490_SNP [dm3] 3L_10363390_SNP [dm6]	G	A	3.692e^-4	0.908	EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15008986	3R_15008986_SNP [dm3] 3R_19183264_SNP [dm6]	A	G	3.694e^-4	0.908	INTRON CG31475
2L	15762094	2L_15762094_SNP [dm3] 2L_15762094_SNP [dm6]	C	G	3.714e^-4	0.908	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11421687	3L_11421687_SNP [dm3] 3L_11428587_SNP [dm6]	T	A	3.719e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	6989667	2L_6989667_SNP [dm3] 2L_6989667_SNP [dm6]	G	A	3.722e^-4	0.908	INTRON uif
X	16424862	X_16424862_SNP [dm3] X_16530829_SNP [dm6]	G	A	3.731e^-4	0.908	INTRON para
3R	9296963	3R_9296963_DEL [dm3] 3R_13471241_DEL [dm6]	GAGCTGGG	T	3.741e^-4	0.908	INTERGENIC
3R	9296972	3R_9296972_SNP [dm3] 3R_13471250_SNP [dm6]	T	A	3.741e^-4	0.908	INTERGENIC
3R	9296978	3R_9296978_DEL [dm3] 3R_13471256_DEL [dm6]	TGTAACCTATCT...	T	3.741e^-4	0.908	INTERGENIC
2R	9404255	2R_9404255_SNP [dm3] 2R_13516750_SNP [dm6]	C	T	3.751e^-4	0.908	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad
3L	15011325	3L_15011325_SNP [dm3] 3L_15018225_SNP [dm6]	T	C	3.752e^-4	0.908	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21140387	3R_21140387_SNP [dm3] 3R_25314665_SNP [dm6]	C	T	3.755e^-4	0.908	UTR_3_PRIME CG10559 UPSTREAM CG31087
X	12781673	X_12781673_SNP [dm3] X_12887640_SNP [dm6]	G	C	3.760e^-4	0.908	INTRON Pde9
3L	9364222	3L_9364222_SNP [dm3] 3L_9371122_SNP [dm6]	G	A	3.762e^-4	0.908	UPSTREAM Fdxh DOWNSTREAM CG4452 & 1 other INTRON Fdxh
2R	17977942	2R_17977942_SNP [dm3] 2R_22090437_SNP [dm6]	C	A	3.783e^-4	0.908	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163
2R	16751228	2R_16751228_SNP [dm3] 2R_20863723_SNP [dm6]	A	G	3.789e^-4	0.908	UPSTREAM CG15227 INTERGENIC
3R	10164220	3R_10164220_SNP [dm3] 3R_14338498_SNP [dm6]	C	T	3.791e^-4	0.908	INTRON NK7.1
2L	3674118	2L_3674118_SNP [dm3] 2L_3674118_SNP [dm6]	T	C	3.799e^-4	0.908	INTRON CG34340
3R	13747166	3R_13747166_SNP [dm3] 3R_17921444_SNP [dm6]	T	C	3.815e^-4	0.908	UTR_5_PRIME cpo
3R	10877465	3R_10877465_SNP [dm3] 3R_15051743_SNP [dm6]	T	C	3.819e^-4	0.908	INTERGENIC
2L	6989668	2L_6989668_SNP [dm3] 2L_6989668_SNP [dm6]	A	G	3.824e^-4	0.908	INTRON uif
3R	22604195	3R_22604195_SNP [dm3] 3R_26778473_SNP [dm6]	C	T	3.826e^-4	0.908	INTERGENIC
3L	9601937	3L_9601937_SNP [dm3] 3L_9608837_SNP [dm6]	A	C	3.828e^-4	0.908	NON_SYNONYMOUS_CODING CG3280
3R	7592426	3R_7592426_SNP [dm3] 3R_11766704_SNP [dm6]	G	T	3.829e^-4	0.908	UTR_3_PRIME l_3_neo38
2L	14710880	2L_14710880_SNP [dm3] 2L_14710880_SNP [dm6]	A	T	3.829e^-4	0.908	INTERGENIC
3L	12731523	3L_12731523_SNP [dm3] 3L_12738423_SNP [dm6]	G	T	3.830e^-4	0.908	INTRON Ptp69D
3L	18387272	3L_18387272_SNP [dm3] 3L_18394172_SNP [dm6]	G	T	3.838e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17095446	3R_17095446_SNP [dm3] 3R_21269724_SNP [dm6]	A	G	3.845e^-4	0.908	UPSTREAM Rab1 & 1 other INTRON AP-2sigma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16521866	3R_16521866_SNP [dm3] 3R_20696144_SNP [dm6]	A	C	3.845e^-4	0.908	INTRON Oamb
3L	21490994	3L_21490994_SNP [dm3] 3L_21497894_SNP [dm6]	T	A	3.850e^-4	0.908	UTR_3_PRIME Glg1 UPSTREAM Hr78 INTRON CR43933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19066475	3R_19066475_SNP [dm3] 3R_23240753_SNP [dm6]	G	A	3.861e^-4	0.908	UPSTREAM CG4467 INTRON CG4467
3R	7772471	3R_7772471_SNP [dm3] 3R_11946749_SNP [dm6]	G	A	3.862e^-4	0.908	INTRON Cad87A
2L	7780198	2L_7780198_SNP [dm3] 2L_7780198_SNP [dm6]	T	C	3.864e^-4	0.908	SYNONYMOUS_CODING Uro
2L	3360707	2L_3360707_SNP [dm3] 2L_3360707_SNP [dm6]	T	A	3.880e^-4	0.908	UTR_3_PRIME CG34394
2L	8586085	2L_8586085_SNP [dm3] 2L_8586085_SNP [dm6]	G	A	3.890e^-4	0.908	INTRON Sema-1a
3R	24345298	3R_24345298_SNP [dm3] 3R_28519576_SNP [dm6]	T	A	3.890e^-4	0.908	UTR_3_PRIME CG31051 DOWNSTREAM Dhc98D	TF binding site mE1_TFBS_cad
3L	20031463	3L_20031463_SNP [dm3] 3L_20038363_SNP [dm6]	A	T	3.896e^-4	0.908	INTERGENIC
X	22093331	X_22093331_SNP [dm3] X_22691495_SNP [dm6]	C	A	3.901e^-4	0.908	INTRON CR44997
2R	9552172	2R_9552172_SNP [dm3] 2R_13664667_SNP [dm6]	C	T	3.903e^-4	0.908	UPSTREAM CG13337 INTRON fas	TF binding site mE1_TFBS_HSA
2L	5450545	2L_5450545_SNP [dm3] 2L_5450545_SNP [dm6]	T	C	3.904e^-4	0.908	INTERGENIC
2R	17985770	2R_17985770_SNP [dm3] 2R_22098265_SNP [dm6]	A	G	3.906e^-4	0.908	INTRON CG11073
2L	13916915	2L_13916915_SNP [dm3] 2L_13916915_SNP [dm6]	T	A	3.906e^-4	0.908	INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13916918	2L_13916918_SNP [dm3] 2L_13916918_SNP [dm6]	T	C	3.906e^-4	0.908	SPLICE_SITE_REGION Ance-3 INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13916921	2L_13916921_SNP [dm3] 2L_13916921_SNP [dm6]	G	T	3.906e^-4	0.908	SPLICE_SITE_REGION Ance-3 INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15789159	3L_15789159_SNP [dm3] 3L_15796059_SNP [dm6]	A	G	3.907e^-4	0.908	INTERGENIC
3L	7721793	3L_7721793_SNP [dm3] 3L_7728693_SNP [dm6]	A	T	3.909e^-4	0.908	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	15555020	3L_15555020_SNP [dm3] 3L_15561920_SNP [dm6]	T	C	3.914e^-4	0.908	SYNONYMOUS_CODING CG7739 DOWNSTREAM AGO2	TF binding site mE1_TFBS_sens
X	6196248	X_6196248_SNP [dm3] X_6302215_SNP [dm6]	C	G	3.915e^-4	0.908	UPSTREAM CG12219 INTERGENIC
3R	7730763	3R_7730763_SNP [dm3] 3R_11905041_SNP [dm6]	A	G	3.916e^-4	0.908	INTRON Cad87A
2L	9499263	2L_9499263_SNP [dm3] 2L_9499263_SNP [dm6]	A	G	3.918e^-4	0.908	INTRON CG33298	TF binding site BDTNP1_TFBS_twi
2L	15763139	2L_15763139_SNP [dm3] 2L_15763139_SNP [dm6]	G	T	3.922e^-4	0.908	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9655325	3L_9655325_INS [dm3] 3L_9662225_INS [dm6]	G	GG	3.923e^-4	0.908	INTRON fry	TF binding site BDTNP1_TFBS_twi
2L	9286190	2L_9286190_SNP [dm3] 2L_9286190_SNP [dm6]	A	G	3.928e^-4	0.908	INTRON Ggamma30A
2L	7846800	2L_7846800_SNP [dm3] 2L_7846800_SNP [dm6]	T	C	3.938e^-4	0.908	UTR_3_PRIME CG14535
2R	18453008	2R_18453008_SNP [dm3] 2R_22565503_SNP [dm6]	T	A	3.938e^-4	0.908	INTRON dnr1
3R	10964454	3R_10964454_SNP [dm3] 3R_15138732_SNP [dm6]	T	A	3.940e^-4	0.908	INTRON CG3984 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8324561	2L_8324561_DEL [dm3] 2L_8324561_DEL [dm6]	CCC	C	3.941e^-4	0.908	INTRON CG7781
2L	18854154	2L_18854154_SNP [dm3] 2L_18854154_SNP [dm6]	G	A	3.953e^-4	0.908	NON_SYNONYMOUS_CODING CG17321 DOWNSTREAM CG10602	TF binding site mE1_TFBS_cad
3R	9296977	3R_9296977_SNP [dm3] 3R_13471255_SNP [dm6]	C	G	3.962e^-4	0.908	INTERGENIC
2R	16454405	2R_16454405_SNP [dm3] 2R_20566900_SNP [dm6]	T	G	3.965e^-4	0.908	INTRON qsm
3L	13179362	3L_13179362_SNP [dm3] 3L_13186262_SNP [dm6]	T	C	3.968e^-4	0.908	INTERGENIC
X	12103891	X_12103891_DEL [dm3] X_12209858_DEL [dm6]	TC	G	3.971e^-4	0.908	INTRON Ten-a
3L	17982951	3L_17982951_SNP [dm3] 3L_17989851_SNP [dm6]	T	G	3.973e^-4	0.908	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3861556	3L_3861556_SNP [dm3] 3L_3861556_SNP [dm6]	G	A	3.983e^-4	0.908	UTR_3_PRIME Awh
3R	22246548	3R_22246548_SNP [dm3] 3R_26420826_SNP [dm6]	G	C	3.989e^-4	0.908	INTERGENIC
X	6062347	X_6062347_SNP [dm3] X_6168314_SNP [dm6]	A	G	3.992e^-4	0.908	INTRON Ca-alpha1T
3L	15210886	3L_15210886_SNP [dm3] 3L_15217786_SNP [dm6]	A	G	4.001e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5828615	X_5828615_SNP [dm3] X_5934582_SNP [dm6]	T	C	4.004e^-4	0.908	INTRON CG3726
2L	6268992	2L_6268992_SNP [dm3] 2L_6268992_SNP [dm6]	G	A	4.006e^-4	0.908	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11930551	2L_11930551_SNP [dm3] 2L_11930551_SNP [dm6]	G	A	4.011e^-4	0.908	INTERGENIC
2R	13217797	2R_13217797_SNP [dm3] 2R_17330292_SNP [dm6]	G	A	4.014e^-4	0.908	INTRON mbl
X	12204136	X_12204136_SNP [dm3] X_12310103_SNP [dm6]	C	G	4.026e^-4	0.908	INTRON Ten-a
2R	17339759	2R_17339759_SNP [dm3] 2R_21452254_SNP [dm6]	A	G	4.037e^-4	0.908	INTRON Sdc
3R	25210861	3R_25210861_DEL [dm3] 3R_29385139_DEL [dm6]	TAT	T	4.044e^-4	0.908	INTRON Ptp99A
3R	12352365	3R_12352365_SNP [dm3] 3R_16526643_SNP [dm6]	G	A	4.061e^-4	0.908	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16837737	2L_16837737_INS [dm3] 2L_16837737_INS [dm6]	T	TC	4.063e^-4	0.908	UPSTREAM SclB & 2 others INTERGENIC
3L	17319291	3L_17319291_SNP [dm3] 3L_17326191_SNP [dm6]	G	A	4.073e^-4	0.908	UPSTREAM CG13725 INTERGENIC
3R	3973340	3R_3973340_INS [dm3] 3R_8147618_INS [dm6]	A	AA	4.076e^-4	0.908	UTR_3_PRIME grn
2R	15008501	2R_15008501_SNP [dm3] 2R_19120996_SNP [dm6]	G	A	4.082e^-4	0.908	UTR_3_PRIME 5-HT1A
3R	21779154	3R_21779154_SNP [dm3] 3R_25953432_SNP [dm6]	G	A	4.083e^-4	0.908	INTRON CCAP-R
X	16167291	X_16167291_SNP [dm3] X_16273258_SNP [dm6]	T	C	4.090e^-4	0.908	SYNONYMOUS_CODING Mfe2 INTRON kat80	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12731519	3L_12731519_SNP [dm3] 3L_12738419_SNP [dm6]	T	A	4.091e^-4	0.908	INTRON Ptp69D
2R	16868134	2R_16868134_SNP [dm3] 2R_20980629_SNP [dm6]	T	A	4.100e^-4	0.908	INTRON CG9313
3L	5882325	3L_5882325_SNP [dm3] 3L_5889225_SNP [dm6]	T	G	4.101e^-4	0.908	INTERGENIC
3L	16439506	3L_16439506_SNP [dm3] 3L_16446406_SNP [dm6]	G	C	4.107e^-4	0.908	INTRON CG33158 & 1 other
2R	8876804	2R_8876804_SNP [dm3] 2R_12989299_SNP [dm6]	G	A	4.115e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17286040	3L_17286040_SNP [dm3] 3L_17292940_SNP [dm6]	C	T	4.120e^-4	0.908	INTERGENIC
3L	11957714	3L_11957714_SNP [dm3] 3L_11964614_SNP [dm6]	T	A	4.131e^-4	0.908	INTRON prc	TF binding site mE1_TFBS_chinmo
3L	9606020	3L_9606020_SNP [dm3] 3L_9612920_SNP [dm6]	C	G	4.142e^-4	0.908	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7754171	3L_7754171_SNP [dm3] 3L_7761071_SNP [dm6]	C	T	4.145e^-4	0.908	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2R	15394498	2R_15394498_SNP [dm3] 2R_19506993_SNP [dm6]	T	C	4.147e^-4	0.908	UPSTREAM tRNA:H:56E INTERGENIC
3L	17414084	3L_17414084_SNP [dm3] 3L_17420984_SNP [dm6]	A	C	4.149e^-4	0.908	DOWNSTREAM Sec3 INTRON blot	TF binding site mE1_TFBS_Trl
3L	13219967	3L_13219967_SNP [dm3] 3L_13226867_SNP [dm6]	C	G	4.152e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	10847814	2R_10847814_SNP [dm3] 2R_14960309_SNP [dm6]	T	C	4.169e^-4	0.908	INTRON aPKC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7003222	3L_7003222_SNP [dm3] 3L_7010122_SNP [dm6]	C	G	4.171e^-4	0.908	INTRON Mp
2R	12466446	2R_12466446_SNP [dm3] 2R_16578941_SNP [dm6]	T	A	4.176e^-4	0.908	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	16328399	3R_16328399_SNP [dm3] 3R_20502677_SNP [dm6]	T	A	4.178e^-4	0.908	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2L	8889236	2L_8889236_DEL [dm3] 2L_8889236_DEL [dm6]	GATCTCGTATTATACC...	G	4.198e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	19538325	3L_19538325_SNP [dm3] 3L_19545225_SNP [dm6]	G	A	4.199e^-4	0.908	UTR_5_PRIME Rcd7 UPSTREAM Rcd7 INTRON l_3_76BDr
3L	17319289	3L_17319289_SNP [dm3] 3L_17326189_SNP [dm6]	G	T	4.209e^-4	0.908	UPSTREAM CG13725 INTERGENIC
3L	683870	3L_683870_SNP [dm3] 3L_683870_SNP [dm6]	T	C	4.222e^-4	0.908	SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	5601398	X_5601398_SNP [dm3] X_5707365_SNP [dm6]	C	T	4.224e^-4	0.908	SPLICE_SITE_REGION CG4096 INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14493836	3L_14493836_SNP [dm3] 3L_14500736_SNP [dm6]	C	A	4.237e^-4	0.908	INTRON bbg
2L	8325610	2L_8325610_SNP [dm3] 2L_8325610_SNP [dm6]	A	T	4.246e^-4	0.908	UPSTREAM CG7781 INTERGENIC
2L	7169583	2L_7169583_SNP [dm3] 2L_7169583_SNP [dm6]	G	T	4.254e^-4	0.908	INTERGENIC
2L	3601044	2L_3601044_SNP [dm3] 2L_3601044_SNP [dm6]	A	T	4.261e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14342015	3L_14342015_SNP [dm3] 3L_14348915_SNP [dm6]	T	A	4.275e^-4	0.908	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18290918	3R_18290918_SNP [dm3] 3R_22465196_SNP [dm6]	T	C	4.278e^-4	0.908	UTR_5_PRIME CG7054 UPSTREAM Pebp1 DOWNSTREAM AP-2mu	TF binding site mE1_TFBS_cad
2R	15008494	2R_15008494_SNP [dm3] 2R_19120989_SNP [dm6]	A	T	4.280e^-4	0.908	UTR_3_PRIME 5-HT1A
2L	9123467	2L_9123467_INS [dm3] 2L_9123467_INS [dm6]	T	TTAAGGCATTT...	4.281e^-4	0.908	UPSTREAM CR44615 INTERGENIC
3R	11235989	3R_11235989_SNP [dm3] 3R_15410267_SNP [dm6]	T	A	4.286e^-4	0.908	UPSTREAM Atx2 INTRON Atx2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	17664526	X_17664526_SNP [dm3] X_17770493_SNP [dm6]	A	G	4.291e^-4	0.908	INTRON unc-4
2L	9264378	2L_9264378_SNP [dm3] 2L_9264378_SNP [dm6]	A	T	4.293e^-4	0.908	INTRON Ggamma30A
X	16076100	X_16076100_SNP [dm3] X_16182067_SNP [dm6]	T	A	4.297e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_sens
2L	11699575	2L_11699575_SNP [dm3] 2L_11699575_SNP [dm6]	C	T	4.305e^-4	0.908	INTERGENIC
3L	4613997	3L_4613997_MNP [dm3] 3L_4613997_MNP [dm6]	ATT	CCG	4.307e^-4	0.908	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	11421619	3L_11421619_SNP [dm3] 3L_11428519_SNP [dm6]	A	C	4.330e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	9139477	3L_9139477_SNP [dm3] 3L_9146377_SNP [dm6]	C	T	4.342e^-4	0.908	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi
3L	1970017	3L_1970017_SNP [dm3] 3L_1970017_SNP [dm6]	G	A	4.343e^-4	0.908	UTR_5_PRIME CG1927 DOWNSTREAM CG11815
3L	7750883	3L_7750883_SNP [dm3] 3L_7757783_SNP [dm6]	A	T	4.345e^-4	0.908	INTRON CG32373
3L	18822439	3L_18822439_SNP [dm3] 3L_18829339_SNP [dm6]	T	C	4.348e^-4	0.908	NON_SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3L	3142465	3L_3142465_SNP [dm3] 3L_3142465_SNP [dm6]	A	T	4.349e^-4	0.908	INTRON CG11537	TF binding site mE1_TFBS_HSA
3L	3142466	3L_3142466_SNP [dm3] 3L_3142466_SNP [dm6]	C	A	4.349e^-4	0.908	INTRON CG11537	TF binding site mE1_TFBS_HSA
X	2947565	X_2947565_SNP [dm3] X_3053532_SNP [dm6]	C	G	4.349e^-4	0.908	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7914337	2L_7914337_SNP [dm3] 2L_7914337_SNP [dm6]	G	C	4.351e^-4	0.908	INTRON Snoo
3R	18419021	3R_18419021_SNP [dm3] 3R_22593299_SNP [dm6]	G	A	4.364e^-4	0.908	INTRON Efa6	TF binding site mE1_TFBS_chinmo
2L	9287980	2L_9287980_SNP [dm3] 2L_9287980_SNP [dm6]	G	A	4.365e^-4	0.908	INTRON Ggamma30A
2L	7227500	2L_7227500_SNP [dm3] 2L_7227500_SNP [dm6]	A	T	4.371e^-4	0.908	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA
3L	11741768	3L_11741768_SNP [dm3] 3L_11748668_SNP [dm6]	G	T	4.387e^-4	0.908	INTRON CG6024
3R	22232356	3R_22232356_INS [dm3] 3R_26406634_INS [dm6]	A	AATCAAGT	4.403e^-4	0.908	INTERGENIC
3L	10563477	3L_10563477_SNP [dm3] 3L_10570377_SNP [dm6]	G	T	4.418e^-4	0.908	INTRON A2bp1
2L	9577582	2L_9577582_SNP [dm3] 2L_9577582_SNP [dm6]	T	C	4.426e^-4	0.908	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	25078873	3R_25078873_SNP [dm3] 3R_29253151_SNP [dm6]	C	T	4.438e^-4	0.908	SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	10847810	2R_10847810_DEL [dm3] 2R_14960305_DEL [dm6]	AA	A	4.446e^-4	0.908	INTRON aPKC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7107191	2R_7107191_SNP [dm3] 2R_11219686_SNP [dm6]	G	A	4.451e^-4	0.908	UTR_5_PRIME Syx6 & 1 other UPSTREAM Syx6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13179364	3L_13179364_SNP [dm3] 3L_13186264_SNP [dm6]	C	A	4.452e^-4	0.908	INTERGENIC
2L	6704951	2L_6704951_SNP [dm3] 2L_6704951_SNP [dm6]	G	A	4.457e^-4	0.908	INTRON Tsp	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	19260404	2R_19260404_SNP [dm3] 2R_23372881_SNP [dm6]	C	T	4.470e^-4	0.908	NON_SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15950462	2R_15950462_SNP [dm3] 2R_20062957_SNP [dm6]	A	G	4.471e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	20772789	3L_20772789_SNP [dm3] 3L_20779689_SNP [dm6]	G	A	4.479e^-4	0.908	SYNONYMOUS_CODING Pex14 DOWNSTREAM CG11399	TF binding site BDTNP1_TFBS_dl
2L	2928160	2L_2928160_SNP [dm3] 2L_2928160_SNP [dm6]	G	A	4.479e^-4	0.908	INTRON lilli
2L	17542255	2L_17542255_SNP [dm3] 2L_17542255_SNP [dm6]	T	A	4.483e^-4	0.908	EXON CR43304
3L	17933060	3L_17933060_SNP [dm3] 3L_17939960_SNP [dm6]	G	A	4.489e^-4	0.908	INTRON CG43174
3L	4018943	3L_4018943_SNP [dm3] 3L_4018943_SNP [dm6]	A	T	4.497e^-4	0.908	UTR_5_PRIME fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16493387	2L_16493387_SNP [dm3] 2L_16493387_SNP [dm6]	T	C	4.499e^-4	0.908	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3630242	2L_3630242_SNP [dm3] 2L_3630242_SNP [dm6]	G	A	4.510e^-4	0.908	INTRON for
2R	11888930	2R_11888930_SNP [dm3] 2R_16001425_SNP [dm6]	C	T	4.511e^-4	0.908	UTR_5_PRIME CG8370 UPSTREAM CG8370 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8438786	2R_8438786_SNP [dm3] 2R_12551281_SNP [dm6]	T	G	4.514e^-4	0.908	INTRON fra
3L	12986194	3L_12986194_SNP [dm3] 3L_12993094_SNP [dm6]	A	T	4.519e^-4	0.908	INTERGENIC
3R	3991328	3R_3991328_SNP [dm3] 3R_8165606_SNP [dm6]	G	T	4.524e^-4	0.908	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9509806	X_9509806_SNP [dm3] X_9615773_SNP [dm6]	T	C	4.525e^-4	0.908	UPSTREAM CG42797 INTRON CG42797
3L	16356247	3L_16356247_SNP [dm3] 3L_16363147_SNP [dm6]	A	T	4.526e^-4	0.908	SYNONYMOUS_CODING Cpr72Ea	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	19338263	3R_19338263_SNP [dm3] 3R_23512541_SNP [dm6]	C	T	4.528e^-4	0.908	INTERGENIC
3L	4348780	3L_4348780_SNP [dm3] 3L_4348780_SNP [dm6]	C	A	4.530e^-4	0.908	DOWNSTREAM CR45156 INTRON Cip4
3L	10576481	3L_10576481_DEL [dm3] 3L_10583381_DEL [dm6]	GATG	G	4.530e^-4	0.908	INTRON A2bp1
3L	18387287	3L_18387287_SNP [dm3] 3L_18394187_SNP [dm6]	G	A	4.534e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17947340	2R_17947340_SNP [dm3] 2R_22059835_SNP [dm6]	G	A	4.538e^-4	0.908	NON_SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo
3R	25909607	3R_25909607_SNP [dm3] 3R_30083885_SNP [dm6]	C	G	4.540e^-4	0.908	INTRON sima	TF binding site mE1_TFBS_Trl
3L	9364233	3L_9364233_SNP [dm3] 3L_9371133_SNP [dm6]	G	A	4.547e^-4	0.908	UPSTREAM Fdxh DOWNSTREAM CG4452 & 1 other INTRON Fdxh
3R	4994364	3R_4994364_INS [dm3] 3R_9168642_INS [dm6]	A	ATGA	4.548e^-4	0.908	INTRON pum
3R	3958548	3R_3958548_SNP [dm3] 3R_8132826_SNP [dm6]	C	T	4.553e^-4	0.908	INTERGENIC
X	18193595	X_18193595_SNP [dm3] X_18299562_SNP [dm6]	A	G	4.565e^-4	0.908	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15763174	2L_15763174_SNP [dm3] 2L_15763174_SNP [dm6]	A	C	4.567e^-4	0.908	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11276635	X_11276635_SNP [dm3] X_11382602_SNP [dm6]	A	G	4.575e^-4	0.908	INTRON dlg1
2R	13094984	2R_13094984_SNP [dm3] 2R_17207479_SNP [dm6]	T	G	4.578e^-4	0.908	INTERGENIC
X	11202592	X_11202592_SNP [dm3] X_11308559_SNP [dm6]	A	T	4.580e^-4	0.908	SYNONYMOUS_CODING Ir10a
3L	13338509	3L_13338509_INS [dm3] 3L_13345409_INS [dm6]	T	TA	4.582e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9253867	2R_9253867_SNP [dm3] 2R_13366362_SNP [dm6]	G	A	4.582e^-4	0.908	INTERGENIC
2R	9253939	2R_9253939_SNP [dm3] 2R_13366434_SNP [dm6]	T	A	4.582e^-4	0.908	INTERGENIC
2L	9380731	2L_9380731_SNP [dm3] 2L_9380731_SNP [dm6]	G	A	4.588e^-4	0.908	INTRON Shawl
X	16021599	X_16021599_SNP [dm3] X_16127566_SNP [dm6]	A	C	4.600e^-4	0.908	INTRON disco-r
X	18196480	X_18196480_SNP [dm3] X_18302447_SNP [dm6]	G	C	4.603e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12056819	X_12056819_SNP [dm3] X_12162786_SNP [dm6]	T	C	4.617e^-4	0.908	INTRON Ten-a
X	2687088	X_2687088_SNP [dm3] X_2793055_SNP [dm6]	C	A	4.617e^-4	0.908	NON_SYNONYMOUS_CODING w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18055370	3R_18055370_SNP [dm3] 3R_22229648_SNP [dm6]	C	A	4.619e^-4	0.908	INTRON SKIP
3L	18804143	3L_18804143_SNP [dm3] 3L_18811043_SNP [dm6]	G	A	4.621e^-4	0.908	INTRON CG14073	TF binding site mE1_TFBS_kn
2L	3056870	2L_3056870_SNP [dm3] 2L_3056870_SNP [dm6]	C	T	4.625e^-4	0.908	UTR_5_PRIME CG3523 UPSTREAM CG3523 DOWNSTREAM v_2_k05816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9253907	2R_9253907_SNP [dm3] 2R_13366402_SNP [dm6]	T	A	4.625e^-4	0.908	INTERGENIC
2L	10592611	2L_10592611_SNP [dm3] 2L_10592611_SNP [dm6]	A	T	4.633e^-4	0.908	INTRON Trim9
2R	9084372	2R_9084372_SNP [dm3] 2R_13196867_SNP [dm6]	T	A	4.641e^-4	0.908	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	25525191	3R_25525191_SNP [dm3] 3R_29699469_SNP [dm6]	C	T	4.641e^-4	0.908	INTERGENIC
3R	17537101	3R_17537101_SNP [dm3] 3R_21711379_SNP [dm6]	A	G	4.642e^-4	0.908	INTRON CG31176
2R	15004315	2R_15004315_SNP [dm3] 2R_19116810_SNP [dm6]	G	T	4.644e^-4	0.908	INTRON 5-HT1A
3L	2950644	3L_2950644_SNP [dm3] 3L_2950644_SNP [dm6]	A	G	4.645e^-4	0.908	SYNONYMOUS_CODING CG32846 INTRON Shab
2L	4179481	2L_4179481_SNP [dm3] 2L_4179481_SNP [dm6]	A	C	4.645e^-4	0.908	INTERGENIC
3L	14493810	3L_14493810_SNP [dm3] 3L_14500710_SNP [dm6]	C	A	4.651e^-4	0.908	INTRON bbg
3R	17376907	3R_17376907_SNP [dm3] 3R_21551185_SNP [dm6]	A	G	4.657e^-4	0.908	INTRON slou
X	15317647	X_15317647_SNP [dm3] X_15423614_SNP [dm6]	A	G	4.660e^-4	0.908	INTRON Cngl
3R	1946041	3R_1946041_SNP [dm3] 3R_6120319_SNP [dm6]	A	T	4.664e^-4	0.908	INTERGENIC
2L	5909139	2L_5909139_SNP [dm3] 2L_5909139_SNP [dm6]	G	T	4.666e^-4	0.908	NON_SYNONYMOUS_CODING CG14000 INTRON bchs
3L	15014701	3L_15014701_INS [dm3] 3L_15021601_INS [dm6]	A	AGA	4.670e^-4	0.908	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14395115	3L_14395115_SNP [dm3] 3L_14402015_SNP [dm6]	G	A	4.674e^-4	0.908	SYNONYMOUS_CODING CG3868 DOWNSTREAM stwl
2R	17979900	2R_17979900_SNP [dm3] 2R_22092395_SNP [dm6]	T	C	4.685e^-4	0.908	SYNONYMOUS_CODING CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1712028	2L_1712028_SNP [dm3] 2L_1712028_SNP [dm6]	A	T	4.691e^-4	0.908	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7849596	2L_7849596_SNP [dm3] 2L_7849596_SNP [dm6]	A	G	4.708e^-4	0.908	SPLICE_SITE_REGION CG14535 INTRON CG14535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17664276	X_17664276_DEL [dm3] X_17770243_DEL [dm6]	AAAAAAAGTGTTAAGG...	A	4.712e^-4	0.908	INTRON unc-4
2L	9150225	2L_9150225_SNP [dm3] 2L_9150225_SNP [dm6]	G	C	4.725e^-4	0.908	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	23546625	3R_23546625_SNP [dm3] 3R_27720903_SNP [dm6]	G	A	4.730e^-4	0.908	INTERGENIC
3R	25595205	3R_25595205_SNP [dm3] 3R_29769483_SNP [dm6]	A	C	4.734e^-4	0.908	INTRON kay
2L	8245967	2L_8245967_SNP [dm3] 2L_8245967_SNP [dm6]	G	A	4.742e^-4	0.908	SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	9253924	2R_9253924_SNP [dm3] 2R_13366419_SNP [dm6]	G	A	4.742e^-4	0.908	INTERGENIC
2R	15062554	2R_15062554_SNP [dm3] 2R_19175049_SNP [dm6]	C	T	4.743e^-4	0.908	SYNONYMOUS_CODING CG10737
X	22082162	X_22082162_SNP [dm3] X_22680326_SNP [dm6]	A	T	4.769e^-4	0.908	INTRON CR44997
3L	18628946	3L_18628946_DEL [dm3] 3L_18635846_DEL [dm6]	CA	G	4.776e^-4	0.908	INTRON MYPT-75D
3L	11904954	3L_11904954_SNP [dm3] 3L_11911854_SNP [dm6]	C	T	4.782e^-4	0.908	INTRON CG44837
3L	13169668	3L_13169668_SNP [dm3] 3L_13176568_SNP [dm6]	G	A	4.785e^-4	0.908	SYNONYMOUS_CODING snky
2R	19133302	2R_19133302_SNP [dm3] 2R_23245779_SNP [dm6]	C	T	4.793e^-4	0.908	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
2R	16909399	2R_16909399_SNP [dm3] 2R_21021894_SNP [dm6]	A	G	4.794e^-4	0.908	NON_SYNONYMOUS_CODING RIC-3 INTRON RIC-3
3R	23064209	3R_23064209_SNP [dm3] 3R_27238487_SNP [dm6]	T	A	4.798e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24299862	3R_24299862_SNP [dm3] 3R_28474140_SNP [dm6]	T	C	4.804e^-4	0.908	UTR_3_PRIME beat-VI DOWNSTREAM beat-VI
3L	14404554	3L_14404554_SNP [dm3] 3L_14411454_SNP [dm6]	T	A	4.807e^-4	0.908	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24964072	3R_24964072_SNP [dm3] 3R_29138350_SNP [dm6]	T	C	4.810e^-4	0.908	SYNONYMOUS_CODING CG14512 UPSTREAM CG14516 DOWNSTREAM Vha100-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4348786	3L_4348786_SNP [dm3] 3L_4348786_SNP [dm6]	C	T	4.812e^-4	0.908	DOWNSTREAM CR45156 INTRON Cip4
2L	7237654	2L_7237654_SNP [dm3] 2L_7237654_SNP [dm6]	A	T	4.819e^-4	0.908	INTRON Ndae1
2L	15787710	2L_15787710_SNP [dm3] 2L_15787710_SNP [dm6]	C	T	4.821e^-4	0.908	SYNONYMOUS_CODING CG18109
3R	3937660	3R_3937660_SNP [dm3] 3R_8111938_SNP [dm6]	C	G	4.824e^-4	0.908	DOWNSTREAM CR44331 INTRON puc	TF binding site BDTNP1_TFBS_dl
2L	4290444	2L_4290444_SNP [dm3] 2L_4290444_SNP [dm6]	C	T	4.832e^-4	0.908	INTRON tutl
2R	8579742	2R_8579742_SNP [dm3] 2R_12692237_SNP [dm6]	T	G	4.832e^-4	0.908	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17976025	2R_17976025_SNP [dm3] 2R_22088520_SNP [dm6]	C	T	4.836e^-4	0.908	SYNONYMOUS_CODING CG13502 DOWNSTREAM CG43393
2R	12792827	2R_12792827_SNP [dm3] 2R_16905322_SNP [dm6]	T	C	4.839e^-4	0.908	INTERGENIC
3L	8631305	3L_8631305_SNP [dm3] 3L_8638205_SNP [dm6]	G	T	4.848e^-4	0.908	INTRON Zasp66
2L	20643482	2L_20643482_SNP [dm3] 2L_20643482_SNP [dm6]	A	G	4.855e^-4	0.908	UTR_3_PRIME phr6-4 UPSTREAM CG17470
3L	14405280	3L_14405280_SNP [dm3] 3L_14412180_SNP [dm6]	C	A	4.855e^-4	0.908	NON_SYNONYMOUS_CODING CG3919 DOWNSTREAM bbg INTRON CG3919
X	13312502	X_13312502_SNP [dm3] X_13418469_SNP [dm6]	A	G	4.863e^-4	0.908	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16744080	2L_16744080_SNP [dm3] 2L_16744080_SNP [dm6]	C	A	4.883e^-4	0.908	UPSTREAM LSm7 INTRON CG17912	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18833967	X_18833967_SNP [dm3] X_18939934_SNP [dm6]	T	A	4.891e^-4	0.908	INTRON CG43759	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	18725863	3R_18725863_SNP [dm3] 3R_22900141_SNP [dm6]	C	A	4.893e^-4	0.908	INTRON klg	TF binding site BDTNP1_TFBS_dl
3L	12278557	3L_12278557_SNP [dm3] 3L_12285457_SNP [dm6]	C	T	4.901e^-4	0.908	INTERGENIC
3R	15763014	3R_15763014_SNP [dm3] 3R_19937292_SNP [dm6]	A	G	4.902e^-4	0.908	SYNONYMOUS_CODING Hs6st
2R	15144925	2R_15144925_SNP [dm3] 2R_19257420_SNP [dm6]	T	C	4.925e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	7227493	2L_7227493_SNP [dm3] 2L_7227493_SNP [dm6]	C	A	4.928e^-4	0.908	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA
3R	25079138	3R_25079138_SNP [dm3] 3R_29253416_SNP [dm6]	G	A	4.929e^-4	0.908	NON_SYNONYMOUS_CODING stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	21140378	3R_21140378_DEL [dm3] 3R_25314656_DEL [dm6]	AA	A	4.929e^-4	0.908	UTR_3_PRIME CG10559 UPSTREAM CG31087
3R	21140385	3R_21140385_INS [dm3] 3R_25314663_INS [dm6]	A	ATATTCATCAAAAAAAGTGC...	4.929e^-4	0.908	UTR_3_PRIME CG10559 UPSTREAM CG31087
2L	5996561	2L_5996561_SNP [dm3] 2L_5996561_SNP [dm6]	G	A	4.929e^-4	0.908	INTRON lid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10490210	3L_10490210_SNP [dm3] 3L_10497110_SNP [dm6]	T	G	4.934e^-4	0.908	INTRON A2bp1
X	2480636	X_2480636_SNP [dm3] X_2586603_SNP [dm6]	G	T	4.938e^-4	0.908	UPSTREAM CG13760 INTRON wds	TF binding site BDTNP1_TFBS_dl
2L	18820390	2L_18820390_SNP [dm3] 2L_18820390_SNP [dm6]	G	A	4.944e^-4	0.908	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
2L	8302043	2L_8302043_SNP [dm3] 2L_8302043_SNP [dm6]	C	T	4.951e^-4	0.908	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3L	11421611	3L_11421611_SNP [dm3] 3L_11428511_SNP [dm6]	T	C	4.962e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	15392798	3L_15392798_SNP [dm3] 3L_15399698_SNP [dm6]	A	T	4.986e^-4	0.908	INTERGENIC
3R	23806617	3R_23806617_SNP [dm3] 3R_27980895_SNP [dm6]	G	T	4.999e^-4	0.908	INTRON betaTub97EF
3L	15133331	3L_15133331_SNP [dm3] 3L_15140231_SNP [dm6]	C	A	4.999e^-4	0.908	INTRON Pdi	TF binding site BDTNP1_TFBS_dl
2R	6861817	2R_6861817_SNP [dm3] 2R_10974312_SNP [dm6]	A	C	5.006e^-4	0.908	INTERGENIC
3R	16979559	3R_16979559_SNP [dm3] 3R_21153837_SNP [dm6]	T	G	5.008e^-4	0.908	INTRON SNF4Agamma
3R	23064153	3R_23064153_SNP [dm3] 3R_27238431_SNP [dm6]	G	A	5.008e^-4	0.908	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3724365	3L_3724365_SNP [dm3] 3L_3724365_SNP [dm6]	G	A	5.011e^-4	0.908	INTRON CG32264
2R	8579616	2R_8579616_SNP [dm3] 2R_12692111_SNP [dm6]	T	G	5.019e^-4	0.908	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	2551948	3R_2551948_SNP [dm3] 3R_6726226_SNP [dm6]	A	T	5.019e^-4	0.908	INTRON pb	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	6663743	2L_6663743_SNP [dm3] 2L_6663743_SNP [dm6]	A	T	5.024e^-4	0.908	UTR_5_PRIME cup & 1 other UPSTREAM cup & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27102039	3R_27102039_SNP [dm3] 3R_31276317_SNP [dm6]	C	G	5.024e^-4	0.908	INTERGENIC
X	2515188	X_2515188_SNP [dm3] X_2621155_SNP [dm6]	G	A	5.027e^-4	0.908	SYNONYMOUS_CODING Seipin DOWNSTREAM brv3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12991563	X_12991563_SNP [dm3] X_13097530_SNP [dm6]	G	A	5.038e^-4	0.908	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14627404	2L_14627404_SNP [dm3] 2L_14627404_SNP [dm6]	A	T	5.039e^-4	0.908	INTRON osp	TF binding site BDTNP1_TFBS_dl
3R	16567767	3R_16567767_SNP [dm3] 3R_20742045_SNP [dm6]	C	A	5.044e^-4	0.908	DOWNSTREAM CG31199 INTRON CG42322
3R	3881024	3R_3881024_SNP [dm3] 3R_8055302_SNP [dm6]	A	T	5.047e^-4	0.908	UTR_3_PRIME CG43060
2L	18789636	2L_18789636_SNP [dm3] 2L_18789636_SNP [dm6]	T	A	5.050e^-4	0.908	INTRON ham	TF binding site mE1_TFBS_cad
3R	23019428	3R_23019428_SNP [dm3] 3R_27193706_SNP [dm6]	A	G	5.051e^-4	0.908	INTRON Ser	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23546666	3R_23546666_SNP [dm3] 3R_27720944_SNP [dm6]	T	A	5.056e^-4	0.908	INTERGENIC
3R	6997647	3R_6997647_SNP [dm3] 3R_11171925_SNP [dm6]	C	A	5.057e^-4	0.908	SYNONYMOUS_CODING Ugt35a	TF binding site mE1_TFBS_HSA
2L	18790819	2L_18790819_SNP [dm3] 2L_18790819_SNP [dm6]	C	T	5.062e^-4	0.908	INTRON ham	TF binding site mE1_TFBS_cad
3L	5471392	3L_5471392_SNP [dm3] 3L_5478292_SNP [dm6]	G	A	5.066e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	23003429	3R_23003429_SNP [dm3] 3R_27177707_SNP [dm6]	A	C	5.069e^-4	0.908	INTRON Ser	TF binding site mE1_TFBS_cad
2L	9150490	2L_9150490_SNP [dm3] 2L_9150490_SNP [dm6]	A	C	5.076e^-4	0.908	UPSTREAM CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17991412	2L_17991412_DEL [dm3] 2L_17991412_DEL [dm6]	GG	G	5.080e^-4	0.908	UTR_3_PRIME Prosbeta5R2
2L	16039153	2L_16039153_SNP [dm3] 2L_16039153_SNP [dm6]	G	T	5.084e^-4	0.908	NON_SYNONYMOUS_CODING beat-Ic	TF binding site mE1_TFBS_cad
3L	18060718	3L_18060718_SNP [dm3] 3L_18067618_SNP [dm6]	C	A	5.084e^-4	0.908	INTERGENIC
3L	597788	3L_597788_SNP [dm3] 3L_597788_SNP [dm6]	C	T	5.099e^-4	0.908	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13816953	X_13816953_SNP [dm3] X_13922920_SNP [dm6]	G	A	5.100e^-4	0.908	INTRON mamo
3L	24114174	3L_24114174_SNP [dm3] 3L_24121074_SNP [dm6]	T	C	5.101e^-4	0.908	INTRON Snap25
2L	17542256	2L_17542256_SNP [dm3] 2L_17542256_SNP [dm6]	T	A	5.109e^-4	0.908	EXON CR43304
X	2481350	X_2481350_SNP [dm3] X_2587317_SNP [dm6]	G	A	5.110e^-4	0.908	SYNONYMOUS_CODING wds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17350956	3R_17350956_SNP [dm3] 3R_21525234_SNP [dm6]	A	G	5.110e^-4	0.908	NON_SYNONYMOUS_CODING CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
3L	16057733	3L_16057733_SNP [dm3] 3L_16064633_SNP [dm6]	T	C	5.112e^-4	0.908	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sbb
2L	3176554	2L_3176554_SNP [dm3] 2L_3176554_SNP [dm6]	A	G	5.120e^-4	0.908	INTRON CG34393
3R	16818234	3R_16818234_SNP [dm3] 3R_20992512_SNP [dm6]	C	A	5.122e^-4	0.908	UTR_5_PRIME Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16679497	2R_16679497_SNP [dm3] 2R_20791992_SNP [dm6]	T	C	5.125e^-4	0.908	SYNONYMOUS_CODING CG43668 UPSTREAM CG43677 & 1 other
3L	18515261	3L_18515261_SNP [dm3] 3L_18522161_SNP [dm6]	G	T	5.127e^-4	0.908	INTERGENIC
X	16989669	X_16989669_SNP [dm3] X_17095636_SNP [dm6]	C	T	5.132e^-4	0.908	INTRON CG4991 & 1 other
2L	9576805	2L_9576805_SNP [dm3] 2L_9576805_SNP [dm6]	A	T	5.135e^-4	0.908	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12503523	2R_12503523_SNP [dm3] 2R_16616018_SNP [dm6]	A	G	5.135e^-4	0.908	INTRON CG5065	TF binding site mE1_TFBS_Trl
2R	14407012	2R_14407012_SNP [dm3] 2R_18519507_SNP [dm6]	A	G	5.135e^-4	0.908	INTRON CG43066	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4439240	2L_4439240_SNP [dm3] 2L_4439240_SNP [dm6]	C	T	5.136e^-4	0.908	UTR_5_PRIME CG15431
2L	9504376	2L_9504376_SNP [dm3] 2L_9504376_SNP [dm6]	C	T	5.137e^-4	0.908	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3271497	3R_3271497_SNP [dm3] 3R_7445775_SNP [dm6]	C	T	5.141e^-4	0.908	INTERGENIC
X	3211106	X_3211106_INS [dm3] X_3317073_INS [dm6]	A	AAA	5.150e^-4	0.908	UPSTREAM CG10793 INTRON dnc & 1 other

By genomic position
Variant impact
Gene name

mn_BoutLength_Night phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results