DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.509e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.9152	0.0856
In_2R_NS	6.2108	0.0448

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2021 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	8656306	3L_8656306_SNP [dm3] 3L_8663206_SNP [dm6]	C	T	1.461e^-6	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10088125	2R_10088125_SNP [dm3] 2R_14200620_SNP [dm6]	T	C	1.600e^-6	0.891	SYNONYMOUS_CODING VGAT DOWNSTREAM Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3787061	3L_3787061_SNP [dm3] 3L_3787061_SNP [dm6]	T	A	1.761e^-6	0.891	INTRON CG32264	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7065156	2R_7065156_SNP [dm3] 2R_11177651_SNP [dm6]	A	C	1.901e^-6	0.891	INTRON shn
2R	11276192	2R_11276192_SNP [dm3] 2R_15388687_SNP [dm6]	G	A	2.866e^-6	0.917	DOWNSTREAM SRPK INTERGENIC
X	19357718	X_19357718_SNP [dm3] X_19463685_SNP [dm6]	A	G	3.106e^-6	0.917	INTRON kek5
X	490193	X_490193_SNP [dm3] X_596160_SNP [dm6]	G	T	4.938e^-6	0.917	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6078142	2L_6078142_SNP [dm3] 2L_6078142_SNP [dm6]	C	A	6.169e^-6	0.917	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14184459	2R_14184459_SNP [dm3] 2R_18296954_SNP [dm6]	A	T	7.290e^-6	0.917	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
X	490285	X_490285_SNP [dm3] X_596252_SNP [dm6]	A	C	7.292e^-6	0.917	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26851522	3R_26851522_SNP [dm3] 3R_31025800_SNP [dm6]	T	G	8.228e^-6	0.917	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12055092	3L_12055092_SNP [dm3] 3L_12061992_SNP [dm6]	T	C	1.065e^-5	0.917	INTRON rols	TF binding site mE1_TFBS_cad
2L	7705541	2L_7705541_SNP [dm3] 2L_7705541_SNP [dm6]	G	C	1.144e^-5	0.917	NON_SYNONYMOUS_CODING Tep3
3L	10652791	3L_10652791_SNP [dm3] 3L_10659691_SNP [dm6]	A	T	1.188e^-5	0.917	UTR_5_PRIME CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7065112	2R_7065112_SNP [dm3] 2R_11177607_SNP [dm6]	C	T	1.243e^-5	0.917	INTRON shn
X	19597353	X_19597353_SNP [dm3] X_19703320_SNP [dm6]	C	T	1.340e^-5	0.917	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2661512	3L_2661512_SNP [dm3] 3L_2661512_SNP [dm6]	A	T	1.372e^-5	0.917	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3R	26305670	3R_26305670_SNP [dm3] 3R_30479948_SNP [dm6]	C	A	1.433e^-5	0.917	INTRON PH4alphaEFB
X	10592341	X_10592341_SNP [dm3] X_10698308_SNP [dm6]	A	G	1.446e^-5	0.917	INTRON X11Lbeta
3R	9115282	3R_9115282_DEL [dm3] 3R_13289560_DEL [dm6]	TTGT	T	1.457e^-5	0.917	UPSTREAM CG15887 INTERGENIC
X	10592413	X_10592413_SNP [dm3] X_10698380_SNP [dm6]	C	A	1.598e^-5	0.917	INTRON X11Lbeta
3L	9297524	3L_9297524_SNP [dm3] 3L_9304424_SNP [dm6]	G	T	1.608e^-5	0.917	INTERGENIC
2R	17457373	2R_17457373_SNP [dm3] 2R_21569868_SNP [dm6]	T	A	1.669e^-5	0.917	INTRON CG10440
2L	7705508	2L_7705508_SNP [dm3] 2L_7705508_SNP [dm6]	C	T	1.754e^-5	0.917	SYNONYMOUS_CODING Tep3
3R	26305721	3R_26305721_SNP [dm3] 3R_30479999_SNP [dm6]	A	T	1.847e^-5	0.917	INTRON PH4alphaEFB
3L	9965318	3L_9965318_SNP [dm3] 3L_9972218_SNP [dm6]	A	C	1.862e^-5	0.917	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14184523	2R_14184523_SNP [dm3] 2R_18297018_SNP [dm6]	G	A	1.872e^-5	0.917	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
X	4321990	X_4321990_SNP [dm3] X_4427957_SNP [dm6]	A	G	1.873e^-5	0.917	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3440277	2L_3440277_SNP [dm3] 2L_3440277_SNP [dm6]	C	T	1.909e^-5	0.917	INTERGENIC
3R	26706243	3R_26706243_DEL [dm3] 3R_30880521_DEL [dm6]	AGTTTGGGG	A	1.918e^-5	0.917	INTRON CG12071
3L	8424647	3L_8424647_SNP [dm3] 3L_8431547_SNP [dm6]	G	A	1.924e^-5	0.917	UTR_3_PRIME Cbl DOWNSTREAM Unr
X	10592435	X_10592435_SNP [dm3] X_10698402_SNP [dm6]	T	C	1.999e^-5	0.917	INTRON X11Lbeta
4	544370	4_544370_SNP [dm3] 4_523744_SNP [dm6]	T	G	2.017e^-5	0.917	INTRON zfh2
2L	16810241	2L_16810241_SNP [dm3] 2L_16810241_SNP [dm6]	G	A	2.057e^-5	0.917	INTRON CG13280 & 1 other
3R	26305591	3R_26305591_SNP [dm3] 3R_30479869_SNP [dm6]	G	A	2.083e^-5	0.917	INTRON PH4alphaEFB
2L	9782506	2L_9782506_SNP [dm3] 2L_9782506_SNP [dm6]	G	A	2.091e^-5	0.917	UTR_5_PRIME IP3K1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3787077	3L_3787077_SNP [dm3] 3L_3787077_SNP [dm6]	C	T	2.092e^-5	0.917	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3886977	2L_3886977_SNP [dm3] 2L_3886977_SNP [dm6]	T	A	2.289e^-5	0.917	SPLICE_SITE_REGION capu INTRON capu
2R	5327603	2R_5327603_SNP [dm3] 2R_9440098_SNP [dm6]	T	C	2.457e^-5	0.917	INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	17297663	2L_17297663_DEL [dm3] 2L_17297663_DEL [dm6]	GATTTTTAGGGCACTTCATT...	AATCTGTCCATCGTATGA...	2.500e^-5	0.917	INTERGENIC
X	485107	X_485107_SNP [dm3] X_591074_SNP [dm6]	G	A	2.523e^-5	0.917	UTR_5_PRIME vnd INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12056934	3L_12056934_SNP [dm3] 3L_12063834_SNP [dm6]	T	G	2.543e^-5	0.917	INTRON rols
3R	26310851	3R_26310851_SNP [dm3] 3R_30485129_SNP [dm6]	T	G	2.574e^-5	0.917	INTRON PH4alphaEFB
3L	18152516	3L_18152516_SNP [dm3] 3L_18159416_SNP [dm6]	G	A	2.590e^-5	0.917	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12336292	2R_12336292_SNP [dm3] 2R_16448787_SNP [dm6]	C	T	2.613e^-5	0.917	INTERGENIC
3R	26310522	3R_26310522_SNP [dm3] 3R_30484800_SNP [dm6]	C	G	2.717e^-5	0.917	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo
3R	26310707	3R_26310707_SNP [dm3] 3R_30484985_SNP [dm6]	G	A	2.717e^-5	0.917	INTRON PH4alphaEFB
3R	26310852	3R_26310852_SNP [dm3] 3R_30485130_SNP [dm6]	T	C	2.741e^-5	0.917	INTRON PH4alphaEFB
3R	26310897	3R_26310897_SNP [dm3] 3R_30485175_SNP [dm6]	G	T	2.741e^-5	0.917	INTRON PH4alphaEFB
X	4320673	X_4320673_SNP [dm3] X_4426640_SNP [dm6]	A	T	2.798e^-5	0.917	UPSTREAM bi INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26310367	3R_26310367_SNP [dm3] 3R_30484645_SNP [dm6]	A	C	2.823e^-5	0.917	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1382205	X_1382205_SNP [dm3] X_1488172_SNP [dm6]	C	T	2.839e^-5	0.917	DOWNSTREAM Nmdar2 INTRON inc & 1 other
2L	16809962	2L_16809962_SNP [dm3] 2L_16809962_SNP [dm6]	C	T	2.890e^-5	0.917	INTRON CG13280 & 1 other
3R	26312350	3R_26312350_SNP [dm3] 3R_30486628_SNP [dm6]	C	T	3.047e^-5	0.917	DOWNSTREAM PH4alphaEFB & 1 other INTERGENIC
2L	10430586	2L_10430586_SNP [dm3] 2L_10430586_SNP [dm6]	T	C	3.148e^-5	0.917	SYNONYMOUS_CODING CG5343 UPSTREAM TfIIB DOWNSTREAM CG5188	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17457315	2R_17457315_SNP [dm3] 2R_21569810_SNP [dm6]	T	G	3.201e^-5	0.917	INTRON CG10440
X	16364648	X_16364648_SNP [dm3] X_16470615_SNP [dm6]	C	A	3.231e^-5	0.917	INTRON para
X	11734907	X_11734907_SNP [dm3] X_11840874_SNP [dm6]	T	G	3.239e^-5	0.917	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2R	7065051	2R_7065051_SNP [dm3] 2R_11177546_SNP [dm6]	T	C	3.287e^-5	0.917	INTRON shn
2R	7065036	2R_7065036_SNP [dm3] 2R_11177531_SNP [dm6]	T	G	3.389e^-5	0.917	INTRON shn
3L	10646708	3L_10646708_SNP [dm3] 3L_10653608_SNP [dm6]	A	G	3.442e^-5	0.917	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14585623	2L_14585623_SNP [dm3] 2L_14585623_SNP [dm6]	G	A	3.530e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	26309350	3R_26309350_SNP [dm3] 3R_30483628_SNP [dm6]	G	T	3.543e^-5	0.917	INTRON PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19668787	X_19668787_SNP [dm3] X_19774754_SNP [dm6]	T	C	3.544e^-5	0.917	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	11735019	X_11735019_SNP [dm3] X_11840986_SNP [dm6]	T	C	3.578e^-5	0.917	SYNONYMOUS_CODING Cyp28c1	TF binding site mE1_TFBS_chinmo
3L	9978215	3L_9978215_SNP [dm3] 3L_9985115_SNP [dm6]	A	C	3.588e^-5	0.917	INTRON dpr6
3L	3806464	3L_3806464_SNP [dm3] 3L_3806464_SNP [dm6]	C	T	3.605e^-5	0.917	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18152534	3L_18152534_SNP [dm3] 3L_18159434_SNP [dm6]	C	T	3.608e^-5	0.917	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5330710	2R_5330710_SNP [dm3] 2R_9443205_SNP [dm6]	C	A	3.690e^-5	0.917	INTRON ced-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11735046	X_11735046_SNP [dm3] X_11841013_SNP [dm6]	T	C	3.696e^-5	0.917	SYNONYMOUS_CODING Cyp28c1	TF binding site mE1_TFBS_chinmo
X	11734928	X_11734928_SNP [dm3] X_11840895_SNP [dm6]	C	T	3.747e^-5	0.917	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
3L	1326755	3L_1326755_SNP [dm3] 3L_1326755_SNP [dm6]	T	C	3.800e^-5	0.917	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25449690	3R_25449690_SNP [dm3] 3R_29623968_SNP [dm6]	C	A	3.824e^-5	0.917	INTERGENIC
3L	1576834	3L_1576834_SNP [dm3] 3L_1576834_SNP [dm6]	T	C	3.905e^-5	0.917	UTR_5_PRIME CG13917 DOWNSTREAM CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	10000926	X_10000926_SNP [dm3] X_10106893_SNP [dm6]	G	C	3.917e^-5	0.917	INTRON RhoU
2R	3508190	2R_3508190_SNP [dm3] 2R_7620685_SNP [dm6]	A	G	3.928e^-5	0.917	UTR_5_PRIME CG1358	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
3R	26852077	3R_26852077_SNP [dm3] 3R_31026355_SNP [dm6]	T	C	3.945e^-5	0.917	INTERGENIC
2L	9155895	2L_9155895_SNP [dm3] 2L_9155895_SNP [dm6]	T	C	3.979e^-5	0.917	INTRON CG32982
2L	15746134	2L_15746134_SNP [dm3] 2L_15746134_SNP [dm6]	G	C	4.063e^-5	0.917	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	5726066	3R_5726066_SNP [dm3] 3R_9900344_SNP [dm6]	A	G	4.152e^-5	0.917	INTRON Glut4EF
2R	16338002	2R_16338002_SNP [dm3] 2R_20450497_SNP [dm6]	C	T	4.218e^-5	0.917	INTRON CG12484
2L	14586585	2L_14586585_SNP [dm3] 2L_14586585_SNP [dm6]	C	T	4.318e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	6390155	X_6390155_SNP [dm3] X_6496122_SNP [dm6]	T	C	4.365e^-5	0.917	INTRON CG42340
3L	18078333	3L_18078333_SNP [dm3] 3L_18085233_SNP [dm6]	T	C	4.370e^-5	0.917	DOWNSTREAM CR32194 EXON CR43253
2L	15954654	2L_15954654_SNP [dm3] 2L_15954654_SNP [dm6]	T	A	4.376e^-5	0.917	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	6805567	3L_6805567_SNP [dm3] 3L_6812467_SNP [dm6]	C	T	4.428e^-5	0.917	INTERGENIC
3R	21610809	3R_21610809_SNP [dm3] 3R_25785087_SNP [dm6]	G	C	4.446e^-5	0.917	INTERGENIC
3R	16983787	3R_16983787_SNP [dm3] 3R_21158065_SNP [dm6]	A	T	4.449e^-5	0.917	INTRON SNF4Agamma
3R	15975181	3R_15975181_SNP [dm3] 3R_20149459_SNP [dm6]	T	C	4.498e^-5	0.917	INTERGENIC
X	11734890	X_11734890_SNP [dm3] X_11840857_SNP [dm6]	C	T	4.604e^-5	0.917	SPLICE_SITE_REGION Cyp28c1 INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2R	12336398	2R_12336398_INS [dm3] 2R_16448893_INS [dm6]	A	AGA	4.634e^-5	0.917	INTERGENIC
3R	26310414	3R_26310414_SNP [dm3] 3R_30484692_SNP [dm6]	G	A	4.637e^-5	0.917	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26310273	3R_26310273_SNP [dm3] 3R_30484551_SNP [dm6]	G	C	4.645e^-5	0.917	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17336975	3L_17336975_SNP [dm3] 3L_17343875_SNP [dm6]	A	C	4.686e^-5	0.917	SYNONYMOUS_CODING brv2
2L	17297799	2L_17297799_SNP [dm3] 2L_17297799_SNP [dm6]	T	C	4.871e^-5	0.917	INTERGENIC
X	19597298	X_19597298_SNP [dm3] X_19703265_SNP [dm6]	A	G	4.949e^-5	0.917	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9695957	2R_9695957_SNP [dm3] 2R_13808452_SNP [dm6]	C	T	4.999e^-5	0.917	INTRON stj
3L	4412691	3L_4412691_DEL [dm3] 3L_4412691_DEL [dm6]	AATTAT	A	5.023e^-5	0.917	INTRON DOR
2R	12488516	2R_12488516_SNP [dm3] 2R_16601011_SNP [dm6]	A	T	5.042e^-5	0.917	DOWNSTREAM CG5089 INTRON CG8303
3L	9761448	3L_9761448_SNP [dm3] 3L_9768348_SNP [dm6]	C	T	5.077e^-5	0.917	INTRON CG8177
2R	12449036	2R_12449036_SNP [dm3] 2R_16561531_SNP [dm6]	G	C	5.139e^-5	0.917	INTRON DAT
2R	5499068	2R_5499068_SNP [dm3] 2R_9611563_SNP [dm6]	T	C	5.182e^-5	0.917	UTR_3_PRIME Mmp2 INTRON CR44069
2R	10990706	2R_10990706_SNP [dm3] 2R_15103201_SNP [dm6]	T	A	5.207e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	439457	3L_439457_SNP [dm3] 3L_439457_SNP [dm6]	C	G	5.260e^-5	0.917	INTRON klar
3L	437804	3L_437804_SNP [dm3] 3L_437804_SNP [dm6]	A	G	5.289e^-5	0.917	UPSTREAM klar INTRON klar
3L	444385	3L_444385_SNP [dm3] 3L_444385_SNP [dm6]	A	G	5.290e^-5	0.917	INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19673167	3R_19673167_SNP [dm3] 3R_23847445_SNP [dm6]	T	C	5.316e^-5	0.917	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26368835	3R_26368835_SNP [dm3] 3R_30543113_SNP [dm6]	C	T	5.325e^-5	0.917	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6745676	2L_6745676_SNP [dm3] 2L_6745676_SNP [dm6]	C	T	5.372e^-5	0.917	UPSTREAM CG31910 DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221
X	483958	X_483958_SNP [dm3] X_589925_SNP [dm6]	A	T	5.410e^-5	0.917	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11163189	2L_11163189_DEL [dm3] 2L_11163189_DEL [dm6]	TTG	C	5.431e^-5	0.917	INTRON Ca-beta
2R	6682621	2R_6682621_SNP [dm3] 2R_10795116_SNP [dm6]	T	C	5.565e^-5	0.917	INTRON CG33144
3L	9966310	3L_9966310_SNP [dm3] 3L_9973210_SNP [dm6]	C	G	5.617e^-5	0.917	NON_SYNONYMOUS_CODING CG42455 UTR_5_PRIME vnc	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	13605462	3R_13605462_SNP [dm3] 3R_17779740_SNP [dm6]	G	A	5.620e^-5	0.917	SYNONYMOUS_CODING CG43102	TF binding site mE1_TFBS_chinmo
2L	10523433	2L_10523433_SNP [dm3] 2L_10523433_SNP [dm6]	G	A	5.644e^-5	0.917	INTERGENIC
3R	8525744	3R_8525744_SNP [dm3] 3R_12700022_SNP [dm6]	C	T	5.674e^-5	0.917	INTRON Past1
3R	26310349	3R_26310349_SNP [dm3] 3R_30484627_SNP [dm6]	A	G	5.887e^-5	0.924	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3990627	2L_3990627_DEL [dm3] 2L_3990627_DEL [dm6]	TT	T	6.029e^-5	0.924	INTRON fred
2L	7088883	2L_7088883_SNP [dm3] 2L_7088883_SNP [dm6]	C	T	6.032e^-5	0.924	INTERGENIC
2L	11163193	2L_11163193_MNP [dm3] 2L_11163193_MNP [dm6]	GAAT	TGTC	6.236e^-5	0.924	INTRON Ca-beta
3R	23675282	3R_23675282_SNP [dm3] 3R_27849560_SNP [dm6]	G	A	6.309e^-5	0.924	INTRON CG34353
3L	8806444	3L_8806444_SNP [dm3] 3L_8813344_SNP [dm6]	T	A	6.367e^-5	0.924	INTERGENIC
2R	6915158	2R_6915158_SNP [dm3] 2R_11027653_SNP [dm6]	A	T	6.517e^-5	0.924	INTRON luna
X	5890452	X_5890452_SNP [dm3] X_5996419_SNP [dm6]	C	T	6.546e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15199405	3R_15199405_SNP [dm3] 3R_19373683_SNP [dm6]	C	T	6.557e^-5	0.924	DOWNSTREAM CG3581 INTRON Ino80
2R	6965171	2R_6965171_SNP [dm3] 2R_11077666_SNP [dm6]	G	T	6.853e^-5	0.924	INTRON luna
2L	11163201	2L_11163201_MNP [dm3] 2L_11163201_MNP [dm6]	CCC	TGT	6.855e^-5	0.924	INTRON Ca-beta
3R	26309360	3R_26309360_SNP [dm3] 3R_30483638_SNP [dm6]	C	A	6.932e^-5	0.924	INTRON PH4alphaEFB	TF binding site mE1_TFBS_HSA
2R	11957941	2R_11957941_SNP [dm3] 2R_16070436_SNP [dm6]	G	A	6.942e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17457377	2R_17457377_SNP [dm3] 2R_21569872_SNP [dm6]	T	C	6.948e^-5	0.924	INTRON CG10440
X	16410357	X_16410357_SNP [dm3] X_16516324_SNP [dm6]	G	A	6.962e^-5	0.924	INTRON para	TF binding site mE1_TFBS_HSA
X	17901055	X_17901055_SNP [dm3] X_18007022_SNP [dm6]	A	G	7.001e^-5	0.924	SYNONYMOUS_CODING CG12672 INTRON Sh
2L	11072204	2L_11072204_SNP [dm3] 2L_11072204_SNP [dm6]	A	G	7.069e^-5	0.924	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6760423	3L_6760423_SNP [dm3] 3L_6767323_SNP [dm6]	T	A	7.134e^-5	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	12232248	2L_12232248_SNP [dm3] 2L_12232248_SNP [dm6]	C	T	7.135e^-5	0.924	INTRON aret
3R	19032923	3R_19032923_SNP [dm3] 3R_23207201_SNP [dm6]	A	G	7.175e^-5	0.924	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12715400	3L_12715400_SNP [dm3] 3L_12722300_SNP [dm6]	G	A	7.198e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15446210	3R_15446210_SNP [dm3] 3R_19620488_SNP [dm6]	A	T	7.207e^-5	0.924	INTRON CG6231
3R	4669439	3R_4669439_SNP [dm3] 3R_8843717_SNP [dm6]	A	T	7.261e^-5	0.924	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8454386	3R_8454386_SNP [dm3] 3R_12628664_SNP [dm6]	T	C	7.292e^-5	0.924	UPSTREAM Vha55 INTRON Snx3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	13094260	2R_13094260_SNP [dm3] 2R_17206755_SNP [dm6]	A	C	7.325e^-5	0.924	INTERGENIC
X	1418170	X_1418170_SNP [dm3] X_1524137_SNP [dm6]	C	T	7.378e^-5	0.924	UTR_3_PRIME Mur2B	TF binding site mE1_TFBS_chinmo
3R	10206413	3R_10206413_SNP [dm3] 3R_14380691_SNP [dm6]	A	T	7.404e^-5	0.924	UTR_3_PRIME soti
3R	26305659	3R_26305659_SNP [dm3] 3R_30479937_SNP [dm6]	G	A	7.419e^-5	0.924	INTRON PH4alphaEFB
3L	3807902	3L_3807902_SNP [dm3] 3L_3807902_SNP [dm6]	C	A	7.552e^-5	0.924	SYNONYMOUS_CODING IntS10	TF binding site mE1_TFBS_sens
3L	18078444	3L_18078444_SNP [dm3] 3L_18085344_SNP [dm6]	A	G	7.604e^-5	0.924	UPSTREAM CR43253 EXON CR32194
2R	14276232	2R_14276232_SNP [dm3] 2R_18388727_SNP [dm6]	G	A	7.636e^-5	0.924	UTR_3_PRIME IM3 UPSTREAM CG16836 DOWNSTREAM IM3	TF binding site BDTNP1_TFBS_dl
2R	16423351	2R_16423351_SNP [dm3] 2R_20535846_SNP [dm6]	G	A	7.641e^-5	0.924	UPSTREAM CG13423 DOWNSTREAM CG18067 INTERGENIC
3L	1327437	3L_1327437_SNP [dm3] 3L_1327437_SNP [dm6]	T	A	7.683e^-5	0.924	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22118227	3L_22118227_SNP [dm3] 3L_22125127_SNP [dm6]	T	G	7.691e^-5	0.924	INTERGENIC
3L	22118218	3L_22118218_SNP [dm3] 3L_22125118_SNP [dm6]	G	A	7.729e^-5	0.924	INTERGENIC
3L	22118221	3L_22118221_SNP [dm3] 3L_22125121_SNP [dm6]	A	T	7.729e^-5	0.924	INTERGENIC
3L	9574783	3L_9574783_SNP [dm3] 3L_9581683_SNP [dm6]	C	T	8.012e^-5	0.924	SYNONYMOUS_CODING CG42673
2R	11170600	2R_11170600_SNP [dm3] 2R_15283095_SNP [dm6]	A	G	8.044e^-5	0.924	INTRON Trpm
2L	4708032	2L_4708032_SNP [dm3] 2L_4708032_SNP [dm6]	T	A	8.082e^-5	0.924	INTRON CG34351
4	549268	4_549268_SNP [dm3] 4_528642_SNP [dm6]	A	G	8.181e^-5	0.924	INTRON zfh2
2L	6082171	2L_6082171_SNP [dm3] 2L_6082171_SNP [dm6]	T	A	8.273e^-5	0.924	UPSTREAM Kr-h1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17462163	2R_17462163_SNP [dm3] 2R_21574658_SNP [dm6]	T	A	8.428e^-5	0.924	INTRON CG10440
3L	11306488	3L_11306488_SNP [dm3] 3L_11313388_SNP [dm6]	T	A	8.445e^-5	0.924	UTR_3_PRIME CG7573	TF binding site mE1_TFBS_sens
2R	12799626	2R_12799626_SNP [dm3] 2R_16912121_SNP [dm6]	T	C	8.458e^-5	0.924	INTERGENIC
3R	15975188	3R_15975188_SNP [dm3] 3R_20149466_SNP [dm6]	C	T	8.485e^-5	0.924	INTERGENIC
2R	13094406	2R_13094406_SNP [dm3] 2R_17206901_SNP [dm6]	T	C	8.531e^-5	0.924	INTERGENIC
3L	10833412	3L_10833412_SNP [dm3] 3L_10840312_SNP [dm6]	T	G	8.673e^-5	0.924	INTERGENIC
2R	12708577	2R_12708577_SNP [dm3] 2R_16821072_SNP [dm6]	A	G	8.707e^-5	0.924	INTERGENIC
2R	10089769	2R_10089769_SNP [dm3] 2R_14202264_SNP [dm6]	G	C	8.714e^-5	0.924	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26310381	3R_26310381_SNP [dm3] 3R_30484659_SNP [dm6]	T	A	8.729e^-5	0.924	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6965174	2R_6965174_SNP [dm3] 2R_11077669_SNP [dm6]	G	A	8.799e^-5	0.924	INTRON luna
3R	26368834	3R_26368834_SNP [dm3] 3R_30543112_SNP [dm6]	T	A	8.879e^-5	0.924	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5850641	3R_5850641_DEL [dm3] 3R_10024919_DEL [dm6]	TCAT	T	8.899e^-5	0.924	INTRON Mical & 1 other
2R	4655964	2R_4655964_SNP [dm3] 2R_8768459_SNP [dm6]	G	A	8.937e^-5	0.924	EXON CR44278
X	521432	X_521432_SNP [dm3] X_627399_SNP [dm6]	G	A	8.950e^-5	0.924	UTR_3_PRIME CG17829 DOWNSTREAM RpL36	TF binding site mE1_TFBS_sens
2R	11935105	2R_11935105_SNP [dm3] 2R_16047600_SNP [dm6]	C	A	8.994e^-5	0.924	UPSTREAM CG8405 DOWNSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10844961	2R_10844961_INS [dm3] 2R_14957456_INS [dm6]	G	AAAGTGT	9.003e^-5	0.924	INTRON aPKC
2L	10026627	2L_10026627_SNP [dm3] 2L_10026627_SNP [dm6]	C	T	9.019e^-5	0.924	UPSTREAM CG13127 INTERGENIC
2L	8802924	2L_8802924_SNP [dm3] 2L_8802924_SNP [dm6]	C	T	9.021e^-5	0.924	INTERGENIC
X	490123	X_490123_SNP [dm3] X_596090_SNP [dm6]	G	A	9.052e^-5	0.924	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11734924	X_11734924_SNP [dm3] X_11840891_SNP [dm6]	T	C	9.053e^-5	0.924	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
X	6438325	X_6438325_SNP [dm3] X_6544292_SNP [dm6]	G	T	9.225e^-5	0.924	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
2L	19645996	2L_19645996_SNP [dm3] 2L_19645996_SNP [dm6]	C	G	9.332e^-5	0.924	INTRON Lar
3L	9967281	3L_9967281_SNP [dm3] 3L_9974181_SNP [dm6]	T	A	9.334e^-5	0.924	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26310920	3R_26310920_SNP [dm3] 3R_30485198_SNP [dm6]	T	A	9.474e^-5	0.924	INTRON PH4alphaEFB
3L	1338594	3L_1338594_SNP [dm3] 3L_1338594_SNP [dm6]	A	C	9.566e^-5	0.924	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	18142606	X_18142606_SNP [dm3] X_18248573_SNP [dm6]	A	T	9.575e^-5	0.924	INTERGENIC
3R	16985793	3R_16985793_SNP [dm3] 3R_21160071_SNP [dm6]	A	G	9.593e^-5	0.924	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
4	190187	4_190187_SNP [dm3] 4_169561_SNP [dm6]	T	G	9.652e^-5	0.924	NON_SYNONYMOUS_CODING CG33978 INTRON CG33978	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26295335	3R_26295335_DEL [dm3] 3R_30469613_DEL [dm6]	AATA	A	9.664e^-5	0.924	INTRON PH4alphaEFB
2R	14128882	2R_14128882_SNP [dm3] 2R_18241377_SNP [dm6]	T	C	9.676e^-5	0.924	INTERGENIC
X	5694025	X_5694025_SNP [dm3] X_5799992_SNP [dm6]	G	T	9.677e^-5	0.924	INTERGENIC
3L	9294470	3L_9294470_SNP [dm3] 3L_9301370_SNP [dm6]	C	T	9.735e^-5	0.924	INTERGENIC
3L	18078349	3L_18078349_SNP [dm3] 3L_18085249_SNP [dm6]	T	G	9.923e^-5	0.924	DOWNSTREAM CR32194 EXON CR43253
X	9431855	X_9431855_SNP [dm3] X_9537822_SNP [dm6]	C	T	9.937e^-5	0.924	INTRON CG32700
3L	12051608	3L_12051608_SNP [dm3] 3L_12058508_SNP [dm6]	C	G	9.948e^-5	0.924	INTRON rols
X	17176694	X_17176694_SNP [dm3] X_17282661_SNP [dm6]	C	A	9.973e^-5	0.924	SYNONYMOUS_CODING CG8664 UTR_5_PRIME CG5445	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	9766019	2L_9766019_SNP [dm3] 2L_9766019_SNP [dm6]	G	A	1.001e^-4	0.924	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
X	19433214	X_19433214_SNP [dm3] X_19539181_SNP [dm6]	A	G	1.006e^-4	0.924	INTRON CG32532
2R	9346093	2R_9346093_SNP [dm3] 2R_13458588_SNP [dm6]	G	A	1.011e^-4	0.924	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9641606	3L_9641606_INS [dm3] 3L_9648506_INS [dm6]	T	TC	1.018e^-4	0.924	INTRON fry & 1 other
3R	26308757	3R_26308757_SNP [dm3] 3R_30483035_SNP [dm6]	T	A	1.026e^-4	0.924	INTRON PH4alphaEFB
2L	11313933	2L_11313933_SNP [dm3] 2L_11313933_SNP [dm6]	A	T	1.028e^-4	0.924	INTERGENIC
3L	9298295	3L_9298295_SNP [dm3] 3L_9305195_SNP [dm6]	G	C	1.041e^-4	0.924	INTERGENIC
2R	12336278	2R_12336278_SNP [dm3] 2R_16448773_SNP [dm6]	A	C	1.045e^-4	0.924	INTERGENIC
3L	9965309	3L_9965309_SNP [dm3] 3L_9972209_SNP [dm6]	A	T	1.047e^-4	0.924	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	8407296	3R_8407296_DEL [dm3] 3R_12581574_DEL [dm6]	TC	T	1.047e^-4	0.924	INTRON Octbeta2R
3R	26851597	3R_26851597_SNP [dm3] 3R_31025875_SNP [dm6]	T	G	1.052e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7661527	2R_7661527_SNP [dm3] 2R_11774022_SNP [dm6]	G	A	1.053e^-4	0.924	INTRON ths
2R	13245690	2R_13245690_SNP [dm3] 2R_17358185_SNP [dm6]	G	A	1.054e^-4	0.924	INTRON mbl
2L	9323713	2L_9323713_SNP [dm3] 2L_9323713_SNP [dm6]	C	G	1.058e^-4	0.924	INTERGENIC
3L	4070701	3L_4070701_SNP [dm3] 3L_4070701_SNP [dm6]	T	G	1.069e^-4	0.924	DOWNSTREAM CG32259 INTRON wit
3R	21610796	3R_21610796_SNP [dm3] 3R_25785074_SNP [dm6]	C	T	1.080e^-4	0.924	INTERGENIC
X	9431881	X_9431881_DEL [dm3] X_9537848_DEL [dm6]	ATTTTGGTTGGTA...	C	1.080e^-4	0.924	INTRON CG32700
2L	11145766	2L_11145766_SNP [dm3] 2L_11145766_SNP [dm6]	A	G	1.081e^-4	0.924	UPSTREAM CG31867 INTRON Gyc32E
3L	11302459	3L_11302459_SNP [dm3] 3L_11309359_SNP [dm6]	T	A	1.081e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_gt
2L	6316691	2L_6316691_SNP [dm3] 2L_6316691_SNP [dm6]	G	T	1.091e^-4	0.924	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9412604	2L_9412604_SNP [dm3] 2L_9412604_SNP [dm6]	A	C	1.120e^-4	0.924	INTRON Shawl
2L	3457352	2L_3457352_SNP [dm3] 2L_3457352_SNP [dm6]	T	C	1.122e^-4	0.924	UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	12280544	X_12280544_SNP [dm3] X_12386511_SNP [dm6]	G	A	1.123e^-4	0.924	INTERGENIC
X	476104	X_476104_SNP [dm3] X_582071_SNP [dm6]	G	A	1.127e^-4	0.924	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2658998	2L_2658998_SNP [dm3] 2L_2658998_SNP [dm6]	A	C	1.132e^-4	0.924	INTERGENIC
2R	5327630	2R_5327630_SNP [dm3] 2R_9440125_SNP [dm6]	G	A	1.138e^-4	0.924	INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	26315777	3R_26315777_SNP [dm3] 3R_30490055_SNP [dm6]	G	A	1.146e^-4	0.924	UPSTREAM PH4alphaSG2 DOWNSTREAM Jon99Fi INTERGENIC
3L	12557917	3L_12557917_SNP [dm3] 3L_12564817_SNP [dm6]	T	A	1.150e^-4	0.924	INTRON sowah
3L	4079539	3L_4079539_SNP [dm3] 3L_4079539_SNP [dm6]	A	C	1.161e^-4	0.924	INTRON Gad1
3R	26851640	3R_26851640_SNP [dm3] 3R_31025918_SNP [dm6]	A	G	1.168e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20517071	X_20517071_SNP [dm3] X_20646044_SNP [dm6]	G	A	1.178e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12708491	2R_12708491_SNP [dm3] 2R_16820986_SNP [dm6]	C	A	1.181e^-4	0.924	INTERGENIC
2R	7486766	2R_7486766_SNP [dm3] 2R_11599261_SNP [dm6]	A	C	1.190e^-4	0.924	INTRON tou	TF binding site BDTNP1_TFBS_dl
2R	14356571	2R_14356571_SNP [dm3] 2R_18469066_SNP [dm6]	C	T	1.191e^-4	0.924	INTRON CG30116
3R	10206420	3R_10206420_SNP [dm3] 3R_14380698_SNP [dm6]	G	T	1.192e^-4	0.924	UTR_3_PRIME soti
2R	6964998	2R_6964998_SNP [dm3] 2R_11077493_SNP [dm6]	G	A	1.193e^-4	0.924	INTRON luna	TF binding site mE1_TFBS_HSA
3L	1665517	3L_1665517_SNP [dm3] 3L_1665517_SNP [dm6]	A	C	1.194e^-4	0.924	SYNONYMOUS_CODING CG7974 UPSTREAM CG7971 DOWNSTREAM Uhg7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21610922	3R_21610922_SNP [dm3] 3R_25785200_SNP [dm6]	T	G	1.204e^-4	0.924	INTERGENIC
2L	12257033	2L_12257033_SNP [dm3] 2L_12257033_SNP [dm6]	A	G	1.204e^-4	0.924	INTRON aret
2R	11309188	2R_11309188_SNP [dm3] 2R_15421683_SNP [dm6]	T	C	1.224e^-4	0.924	INTRON CG43729	TF binding site mE1_TFBS_cad
2R	7071320	2R_7071320_SNP [dm3] 2R_11183815_SNP [dm6]	G	A	1.234e^-4	0.924	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA
X	17357582	X_17357582_DEL [dm3] X_17463549_DEL [dm6]	TTTCAAAATCAATCGAGTGA...	T	1.247e^-4	0.924	INTRON CG43658
2L	7707241	2L_7707241_SNP [dm3] 2L_7707241_SNP [dm6]	G	A	1.247e^-4	0.924	SPLICE_SITE_REGION Tep3 DOWNSTREAM CR44990 INTRON Tep3	TF binding site mE1_TFBS_inv
3L	9504745	3L_9504745_SNP [dm3] 3L_9511645_SNP [dm6]	G	A	1.252e^-4	0.924	UPSTREAM snoRNA:Me28S-G3253 & 1 other DOWNSTREAM CG33703 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13094221	2R_13094221_INS [dm3] 2R_17206716_INS [dm6]	T	TC	1.261e^-4	0.924	DOWNSTREAM CG43237 INTERGENIC
X	476700	X_476700_SNP [dm3] X_582667_SNP [dm6]	A	C	1.264e^-4	0.924	UTR_5_PRIME vnd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10610468	2R_10610468_SNP [dm3] 2R_14722963_SNP [dm6]	T	G	1.265e^-4	0.924	INTERGENIC
2R	17988231	2R_17988231_SNP [dm3] 2R_22100726_SNP [dm6]	G	T	1.281e^-4	0.924	INTERGENIC
3L	1338527	3L_1338527_SNP [dm3] 3L_1338527_SNP [dm6]	T	C	1.298e^-4	0.924	NON_SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12042586	3L_12042586_SNP [dm3] 3L_12049486_SNP [dm6]	C	T	1.300e^-4	0.924	INTRON rols
2L	7221229	2L_7221229_SNP [dm3] 2L_7221229_SNP [dm6]	T	C	1.320e^-4	0.924	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
2L	8335643	2L_8335643_SNP [dm3] 2L_8335643_SNP [dm6]	T	C	1.324e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7432941	3L_7432941_SNP [dm3] 3L_7439841_SNP [dm6]	T	A	1.342e^-4	0.924	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2L	11163199	2L_11163199_SNP [dm3] 2L_11163199_SNP [dm6]	A	T	1.343e^-4	0.924	INTRON Ca-beta
2R	14724147	2R_14724147_SNP [dm3] 2R_18836642_SNP [dm6]	G	A	1.343e^-4	0.924	DOWNSTREAM CG15099 INTRON CG15083
2L	11938160	2L_11938160_SNP [dm3] 2L_11938160_SNP [dm6]	C	T	1.343e^-4	0.924	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
3R	26299661	3R_26299661_SNP [dm3] 3R_30473939_SNP [dm6]	G	C	1.358e^-4	0.924	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
X	2838857	X_2838857_SNP [dm3] X_2944824_SNP [dm6]	T	C	1.364e^-4	0.924	UPSTREAM CG14423 DOWNSTREAM CG14422 INTRON kirre
X	490213	X_490213_SNP [dm3] X_596180_SNP [dm6]	C	G	1.365e^-4	0.924	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16786841	2R_16786841_SNP [dm3] 2R_20899336_SNP [dm6]	A	C	1.367e^-4	0.924	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3L	1576837	3L_1576837_SNP [dm3] 3L_1576837_SNP [dm6]	T	C	1.368e^-4	0.924	UTR_5_PRIME CG13917 DOWNSTREAM CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26666414	3R_26666414_SNP [dm3] 3R_30840692_SNP [dm6]	C	T	1.380e^-4	0.924	SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12271247	2R_12271247_SNP [dm3] 2R_16383742_SNP [dm6]	G	C	1.397e^-4	0.924	UTR_3_PRIME CG43187	TF binding site mE1_TFBS_chinmo
2L	4188122	2L_4188122_SNP [dm3] 2L_4188122_SNP [dm6]	G	A	1.405e^-4	0.924	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4070620	3L_4070620_INS [dm3] 3L_4070620_INS [dm6]	A	AAGAAAACTTAAAACTTACT...	1.420e^-4	0.924	DOWNSTREAM CG32259 INTRON wit
3R	26667121	3R_26667121_SNP [dm3] 3R_30841399_SNP [dm6]	G	T	1.421e^-4	0.924	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
2L	9629483	2L_9629483_SNP [dm3] 2L_9629483_SNP [dm6]	A	C	1.422e^-4	0.924	INTERGENIC
2R	16786834	2R_16786834_DEL [dm3] 2R_20899329_DEL [dm6]	AAA	G	1.435e^-4	0.924	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3L	443076	3L_443076_SNP [dm3] 3L_443076_SNP [dm6]	T	C	1.436e^-4	0.924	NON_SYNONYMOUS_CODING klar INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16269598	2R_16269598_SNP [dm3] 2R_20382093_SNP [dm6]	A	T	1.440e^-4	0.924	INTERGENIC
2R	13390535	2R_13390535_SNP [dm3] 2R_17503030_SNP [dm6]	T	A	1.441e^-4	0.924	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17297752	2L_17297752_INS [dm3] 2L_17297752_INS [dm6]	A	ATGAA	1.448e^-4	0.924	INTERGENIC
2R	16147275	2R_16147275_SNP [dm3] 2R_20259770_SNP [dm6]	C	G	1.450e^-4	0.924	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26851598	3R_26851598_SNP [dm3] 3R_31025876_SNP [dm6]	C	A	1.462e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1504820	2L_1504820_SNP [dm3] 2L_1504820_SNP [dm6]	T	C	1.466e^-4	0.924	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6883587	2R_6883587_SNP [dm3] 2R_10996082_SNP [dm6]	T	C	1.491e^-4	0.924	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12551844	3L_12551844_SNP [dm3] 3L_12558744_SNP [dm6]	C	T	1.499e^-4	0.924	INTRON sowah
2R	14128725	2R_14128725_SNP [dm3] 2R_18241220_SNP [dm6]	T	C	1.502e^-4	0.924	INTERGENIC
2L	10196817	2L_10196817_SNP [dm3] 2L_10196817_SNP [dm6]	G	A	1.508e^-4	0.924	NON_SYNONYMOUS_CODING Sur
3L	13061719	3L_13061719_SNP [dm3] 3L_13068619_SNP [dm6]	T	C	1.524e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	7486735	2R_7486735_SNP [dm3] 2R_11599230_SNP [dm6]	G	T	1.527e^-4	0.924	INTRON tou	TF binding site BDTNP1_TFBS_dl
2L	9323554	2L_9323554_SNP [dm3] 2L_9323554_SNP [dm6]	A	C	1.528e^-4	0.924	INTERGENIC
2R	4695921	2R_4695921_SNP [dm3] 2R_8808416_SNP [dm6]	C	T	1.532e^-4	0.924	INTRON sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14585722	2L_14585722_SNP [dm3] 2L_14585722_SNP [dm6]	T	A	1.539e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	4739963	2R_4739963_SNP [dm3] 2R_8852458_SNP [dm6]	G	A	1.541e^-4	0.924	SYNONYMOUS_CODING sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7618976	2R_7618976_SNP [dm3] 2R_11731471_SNP [dm6]	G	A	1.552e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	491744	X_491744_SNP [dm3] X_597711_SNP [dm6]	C	T	1.557e^-4	0.924	UTR_3_PRIME vnd INTRON CG13366
2L	1504278	2L_1504278_SNP [dm3] 2L_1504278_SNP [dm6]	A	T	1.560e^-4	0.924	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6148266	3L_6148266_SNP [dm3] 3L_6155166_SNP [dm6]	G	A	1.582e^-4	0.924	EXON CR45421	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18907717	3R_18907717_DEL [dm3] 3R_23081995_DEL [dm6]	ATATATA	A	1.588e^-4	0.924	INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13094414	2R_13094414_SNP [dm3] 2R_17206909_SNP [dm6]	C	A	1.592e^-4	0.924	INTERGENIC
2L	17297047	2L_17297047_SNP [dm3] 2L_17297047_SNP [dm6]	A	T	1.605e^-4	0.924	INTERGENIC
3L	18150318	3L_18150318_SNP [dm3] 3L_18157218_SNP [dm6]	G	A	1.606e^-4	0.924	INTRON CG13699
3R	16616026	3R_16616026_SNP [dm3] 3R_20790304_SNP [dm6]	G	A	1.609e^-4	0.924	SYNONYMOUS_CODING Syp INTRON Syp
2R	14062207	2R_14062207_SNP [dm3] 2R_18174702_SNP [dm6]	A	T	1.610e^-4	0.924	UTR_3_PRIME CG10916 DOWNSTREAM CG5726 & 1 other	TF binding site mE1_TFBS_cad
2L	3445832	2L_3445832_SNP [dm3] 2L_3445832_SNP [dm6]	T	A	1.617e^-4	0.924	UPSTREAM CG2772 INTERGENIC
2L	4787461	2L_4787461_SNP [dm3] 2L_4787461_SNP [dm6]	G	A	1.625e^-4	0.924	INTRON CG15630
X	12281113	X_12281113_SNP [dm3] X_12387080_SNP [dm6]	T	A	1.626e^-4	0.924	INTERGENIC
2L	6315183	2L_6315183_DEL [dm3] 2L_6315183_DEL [dm6]	GT	G	1.627e^-4	0.924	INTRON Ddr
3R	8451459	3R_8451459_SNP [dm3] 3R_12625737_SNP [dm6]	C	T	1.628e^-4	0.924	SYNONYMOUS_CODING Vha55	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7135263	2R_7135263_SNP [dm3] 2R_11247758_SNP [dm6]	G	T	1.630e^-4	0.924	UPSTREAM CG34227 INTERGENIC
3L	5437748	3L_5437748_SNP [dm3] 3L_5444648_SNP [dm6]	G	T	1.634e^-4	0.924	INTERGENIC
2L	7221214	2L_7221214_SNP [dm3] 2L_7221214_SNP [dm6]	G	A	1.654e^-4	0.924	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
3R	26301493	3R_26301493_SNP [dm3] 3R_30475771_SNP [dm6]	G	A	1.658e^-4	0.924	UPSTREAM spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26301517	3R_26301517_SNP [dm3] 3R_30475795_SNP [dm6]	C	T	1.658e^-4	0.924	UPSTREAM spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14184484	2R_14184484_SNP [dm3] 2R_18296979_SNP [dm6]	C	T	1.663e^-4	0.924	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
3L	8747198	3L_8747198_SNP [dm3] 3L_8754098_SNP [dm6]	A	G	1.666e^-4	0.924	UTR_5_PRIME Fhos UPSTREAM Fhos
3L	2661240	3L_2661240_SNP [dm3] 3L_2661240_SNP [dm6]	G	T	1.667e^-4	0.924	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
X	493827	X_493827_SNP [dm3] X_599794_SNP [dm6]	C	G	1.679e^-4	0.924	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	22046620	2L_22046620_SNP [dm3] 2L_22046620_SNP [dm6]	A	C	1.681e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10089733	2R_10089733_SNP [dm3] 2R_14202228_SNP [dm6]	C	T	1.692e^-4	0.924	SYNONYMOUS_CODING Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8191260	2R_8191260_SNP [dm3] 2R_12303755_SNP [dm6]	T	G	1.693e^-4	0.924	NON_SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2
X	19433197	X_19433197_SNP [dm3] X_19539164_SNP [dm6]	T	C	1.701e^-4	0.924	INTRON CG32532
3R	26794224	3R_26794224_SNP [dm3] 3R_30968502_SNP [dm6]	C	A	1.707e^-4	0.924	UTR_3_PRIME 5-HT7 DOWNSTREAM 5-HT7
2L	15109759	2L_15109759_SNP [dm3] 2L_15109759_SNP [dm6]	C	T	1.715e^-4	0.924	SYNONYMOUS_CODING CG15269	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15975245	3R_15975245_INS [dm3] 3R_20149523_INS [dm6]	T	TAAATTCAAATGAT...	1.717e^-4	0.924	INTERGENIC
3R	15975251	3R_15975251_SNP [dm3] 3R_20149529_SNP [dm6]	C	T	1.717e^-4	0.924	INTERGENIC
X	8184260	X_8184260_SNP [dm3] X_8290227_SNP [dm6]	G	C	1.723e^-4	0.924	INTRON nAChRalpha3
2L	4185886	2L_4185886_SNP [dm3] 2L_4185886_SNP [dm6]	T	C	1.737e^-4	0.924	DOWNSTREAM CG31961 INTRON CR44057	TF binding site BDTNP1_TFBS_twi
3R	16725557	3R_16725557_SNP [dm3] 3R_20899835_SNP [dm6]	C	T	1.742e^-4	0.924	INTERGENIC
3R	16725575	3R_16725575_SNP [dm3] 3R_20899853_SNP [dm6]	C	A	1.743e^-4	0.924	INTERGENIC
2R	11957735	2R_11957735_DEL [dm3] 2R_16070230_DEL [dm6]	CC	C	1.744e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
3R	1955361	3R_1955361_SNP [dm3] 3R_6129639_SNP [dm6]	C	A	1.744e^-4	0.924	INTERGENIC
X	841810	X_841810_SNP [dm3] X_947777_SNP [dm6]	T	C	1.749e^-4	0.924	UPSTREAM CG3699 DOWNSTREAM CG3690 INTERGENIC
3L	9965798	3L_9965798_SNP [dm3] 3L_9972698_SNP [dm6]	A	T	1.751e^-4	0.924	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10825246	3R_10825246_INS [dm3] 3R_14999524_INS [dm6]	A	ATATAAAA	1.753e^-4	0.924	INTERGENIC
2L	12060314	2L_12060314_SNP [dm3] 2L_12060314_SNP [dm6]	A	G	1.754e^-4	0.924	SYNONYMOUS_CODING Rab3-GAP
3L	11443063	3L_11443063_DEL [dm3] 3L_11449963_DEL [dm6]	TTACCCTCAACC...	T	1.754e^-4	0.924	INTERGENIC
3L	5780886	3L_5780886_SNP [dm3] 3L_5787786_SNP [dm6]	G	A	1.756e^-4	0.924	INTERGENIC
X	479880	X_479880_SNP [dm3] X_585847_SNP [dm6]	A	G	1.759e^-4	0.924	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2946259	X_2946259_SNP [dm3] X_3052226_SNP [dm6]	G	T	1.760e^-4	0.924	INTRON kirre
X	481086	X_481086_SNP [dm3] X_587053_SNP [dm6]	C	T	1.780e^-4	0.924	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8910194	3R_8910194_SNP [dm3] 3R_13084472_SNP [dm6]	C	T	1.788e^-4	0.924	INTERGENIC
2R	17927599	2R_17927599_SNP [dm3] 2R_22040094_SNP [dm6]	C	G	1.793e^-4	0.924	UPSTREAM CG34370 INTERGENIC
2R	14183766	2R_14183766_SNP [dm3] 2R_18296261_SNP [dm6]	C	T	1.794e^-4	0.924	UPSTREAM CG18538 DOWNSTREAM CG18536 INTRON sbb & 1 other
2R	9233924	2R_9233924_SNP [dm3] 2R_13346419_SNP [dm6]	A	C	1.801e^-4	0.924	INTRON CR44206
2L	2257033	2L_2257033_SNP [dm3] 2L_2257033_SNP [dm6]	A	G	1.803e^-4	0.924	DOWNSTREAM CR44787 INTERGENIC
3L	10966557	3L_10966557_SNP [dm3] 3L_10973457_SNP [dm6]	C	T	1.806e^-4	0.924	UTR_3_PRIME CG14147
3L	1334192	3L_1334192_SNP [dm3] 3L_1334192_SNP [dm6]	G	A	1.818e^-4	0.924	SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1326918	3L_1326918_SNP [dm3] 3L_1326918_SNP [dm6]	A	C	1.822e^-4	0.924	NON_SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	3990579	2L_3990579_SNP [dm3] 2L_3990579_SNP [dm6]	C	A	1.826e^-4	0.924	INTRON fred
X	2946263	X_2946263_SNP [dm3] X_3052230_SNP [dm6]	A	G	1.834e^-4	0.924	INTRON kirre
X	2838827	X_2838827_SNP [dm3] X_2944794_SNP [dm6]	G	A	1.837e^-4	0.924	UPSTREAM CG14423 DOWNSTREAM CG14422 INTRON kirre
2L	4265858	2L_4265858_SNP [dm3] 2L_4265858_SNP [dm6]	C	T	1.842e^-4	0.924	INTERGENIC
3R	19371688	3R_19371688_DEL [dm3] 3R_23545966_DEL [dm6]	AT	A	1.846e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6280469	2L_6280469_SNP [dm3] 2L_6280469_SNP [dm6]	G	A	1.847e^-4	0.924	INTRON Ddr
X	2946281	X_2946281_SNP [dm3] X_3052248_SNP [dm6]	G	A	1.851e^-4	0.924	INTRON kirre
2L	3990542	2L_3990542_SNP [dm3] 2L_3990542_SNP [dm6]	G	A	1.851e^-4	0.924	INTRON fred
3R	15975240	3R_15975240_SNP [dm3] 3R_20149518_SNP [dm6]	G	A	1.854e^-4	0.924	INTERGENIC
3R	23675375	3R_23675375_SNP [dm3] 3R_27849653_SNP [dm6]	T	C	1.856e^-4	0.924	INTRON CG34353
2R	20476636	2R_20476636_SNP [dm3] 2R_24589113_SNP [dm6]	C	T	1.858e^-4	0.924	INTRON pio	TF binding site mE1_TFBS_chinmo
2R	8964757	2R_8964757_SNP [dm3] 2R_13077252_SNP [dm6]	A	G	1.865e^-4	0.924	INTRON Drl-2	TF binding site mE1_TFBS_cad
2L	7357470	2L_7357470_SNP [dm3] 2L_7357470_SNP [dm6]	A	T	1.866e^-4	0.924	INTERGENIC
2L	11550828	2L_11550828_SNP [dm3] 2L_11550828_SNP [dm6]	G	A	1.874e^-4	0.924	UPSTREAM CR44494 INTERGENIC
3R	9956882	3R_9956882_SNP [dm3] 3R_14131160_SNP [dm6]	C	T	1.874e^-4	0.924	NON_SYNONYMOUS_CODING CG14356	TF binding site mE1_TFBS_cad
3L	4070710	3L_4070710_SNP [dm3] 3L_4070710_SNP [dm6]	C	A	1.877e^-4	0.924	DOWNSTREAM CG32259 INTRON wit
2L	13473683	2L_13473683_SNP [dm3] 2L_13473683_SNP [dm6]	A	T	1.878e^-4	0.924	INTRON CG42784
2L	5508331	2L_5508331_SNP [dm3] 2L_5508331_SNP [dm6]	C	G	1.883e^-4	0.924	INTERGENIC
X	5695653	X_5695653_SNP [dm3] X_5801620_SNP [dm6]	A	G	1.885e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20527034	3L_20527034_SNP [dm3] 3L_20533934_SNP [dm6]	A	T	1.894e^-4	0.924	UPSTREAM CG13250 INTRON Rcd2 & 1 other
2L	2532634	2L_2532634_SNP [dm3] 2L_2532634_SNP [dm6]	T	C	1.913e^-4	0.924	DOWNSTREAM CR44112 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12356978	2R_12356978_SNP [dm3] 2R_16469473_SNP [dm6]	C	G	1.918e^-4	0.924	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	18165927	3L_18165927_SNP [dm3] 3L_18172827_SNP [dm6]	T	A	1.922e^-4	0.924	INTRON W	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9766001	2L_9766001_SNP [dm3] 2L_9766001_SNP [dm6]	A	T	1.949e^-4	0.924	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
2R	18856722	2R_18856722_SNP [dm3] 2R_22969199_SNP [dm6]	T	C	1.949e^-4	0.924	INTERGENIC
X	2946272	X_2946272_SNP [dm3] X_3052239_SNP [dm6]	A	T	1.955e^-4	0.924	INTRON kirre
2R	14128863	2R_14128863_SNP [dm3] 2R_18241358_SNP [dm6]	A	C	1.959e^-4	0.924	INTERGENIC
2L	3875456	2L_3875456_SNP [dm3] 2L_3875456_SNP [dm6]	G	A	1.961e^-4	0.924	INTRON capu
X	16149729	X_16149729_SNP [dm3] X_16255696_SNP [dm6]	T	C	1.970e^-4	0.924	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9621521	3L_9621521_SNP [dm3] 3L_9628421_SNP [dm6]	G	A	1.990e^-4	0.924	UPSTREAM CG8336 INTRON Or67b
3R	25457249	3R_25457249_SNP [dm3] 3R_29631527_SNP [dm6]	T	G	2.010e^-4	0.924	UTR_3_PRIME Dop1R2
2R	17462276	2R_17462276_SNP [dm3] 2R_21574771_SNP [dm6]	T	C	2.016e^-4	0.924	INTRON CG10440
3R	23388847	3R_23388847_SNP [dm3] 3R_27563125_SNP [dm6]	T	G	2.021e^-4	0.924	UTR_3_PRIME wdb
2R	9233919	2R_9233919_DEL [dm3] 2R_13346414_DEL [dm6]	CG	C	2.028e^-4	0.924	INTRON CR44206
3L	9964331	3L_9964331_SNP [dm3] 3L_9971231_SNP [dm6]	C	T	2.040e^-4	0.924	SYNONYMOUS_CODING CG6674 DOWNSTREAM Nc
X	1389603	X_1389603_SNP [dm3] X_1495570_SNP [dm6]	C	T	2.043e^-4	0.924	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	6805552	3L_6805552_SNP [dm3] 3L_6812452_SNP [dm6]	T	C	2.047e^-4	0.924	INTERGENIC
3L	20759072	3L_20759072_DEL [dm3] 3L_20765972_DEL [dm6]	TA	T	2.049e^-4	0.924	INTERGENIC
3L	10966541	3L_10966541_SNP [dm3] 3L_10973441_SNP [dm6]	T	A	2.053e^-4	0.924	UTR_3_PRIME CG14147
3R	19371818	3R_19371818_SNP [dm3] 3R_23546096_SNP [dm6]	A	G	2.059e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26295413	3R_26295413_SNP [dm3] 3R_30469691_SNP [dm6]	C	T	2.063e^-4	0.924	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
3R	26310523	3R_26310523_SNP [dm3] 3R_30484801_SNP [dm6]	G	A	2.068e^-4	0.924	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo
3L	10646833	3L_10646833_SNP [dm3] 3L_10653733_SNP [dm6]	A	T	2.069e^-4	0.924	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12280125	X_12280125_SNP [dm3] X_12386092_SNP [dm6]	T	C	2.070e^-4	0.924	INTERGENIC
2R	19153600	2R_19153600_SNP [dm3] 2R_23266077_SNP [dm6]	C	G	2.073e^-4	0.924	UPSTREAM CG12782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12086385	2R_12086385_SNP [dm3] 2R_16198880_SNP [dm6]	G	A	2.079e^-4	0.924	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837 DOWNSTREAM shark	TF binding site mE1_TFBS_cad
3R	8439554	3R_8439554_SNP [dm3] 3R_12613832_SNP [dm6]	T	C	2.087e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA
X	1535355	X_1535355_SNP [dm3] X_1641322_SNP [dm6]	G	A	2.092e^-4	0.924	INTRON Mur2B & 1 other
2L	17934875	2L_17934875_SNP [dm3] 2L_17934875_SNP [dm6]	C	T	2.101e^-4	0.924	INTERGENIC
2R	16423306	2R_16423306_SNP [dm3] 2R_20535801_SNP [dm6]	T	C	2.102e^-4	0.924	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
2L	14581733	2L_14581733_SNP [dm3] 2L_14581733_SNP [dm6]	G	A	2.103e^-4	0.924	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18025945	2R_18025945_SNP [dm3] 2R_22138440_SNP [dm6]	G	A	2.104e^-4	0.924	UPSTREAM CG11269 INTRON a
X	4379920	X_4379920_SNP [dm3] X_4485887_SNP [dm6]	C	T	2.105e^-4	0.924	DOWNSTREAM bi INTRON CR32773
2R	11315704	2R_11315704_SNP [dm3] 2R_15428199_SNP [dm6]	T	G	2.106e^-4	0.924	UPSTREAM CG34188 INTRON CG43729
2L	4301859	2L_4301859_INS [dm3] 2L_4301859_INS [dm6]	T	TT	2.123e^-4	0.924	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12086334	2R_12086334_SNP [dm3] 2R_16198829_SNP [dm6]	C	T	2.129e^-4	0.924	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837 DOWNSTREAM shark	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17297606	2L_17297606_INS [dm3] 2L_17297606_INS [dm6]	A	ATGTATACAGGTTAA...	2.133e^-4	0.924	INTERGENIC
3L	437779	3L_437779_SNP [dm3] 3L_437779_SNP [dm6]	A	G	2.152e^-4	0.924	UPSTREAM klar INTRON klar
3R	26317456	3R_26317456_SNP [dm3] 3R_30491734_SNP [dm6]	C	G	2.160e^-4	0.924	NON_SYNONYMOUS_CODING PH4alphaSG2 DOWNSTREAM PH4alphaMP	TF binding site mE1_TFBS_cad
X	1392458	X_1392458_SNP [dm3] X_1498425_SNP [dm6]	G	A	2.166e^-4	0.924	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3L	1333773	3L_1333773_SNP [dm3] 3L_1333773_SNP [dm6]	G	A	2.167e^-4	0.924	SYNONYMOUS_CODING CG2211 UPSTREAM msd5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	1504364	2L_1504364_SNP [dm3] 2L_1504364_SNP [dm6]	G	A	2.168e^-4	0.924	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9965591	3L_9965591_SNP [dm3] 3L_9972491_SNP [dm6]	C	G	2.172e^-4	0.924	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17293202	2L_17293202_SNP [dm3] 2L_17293202_SNP [dm6]	T	A	2.177e^-4	0.924	UPSTREAM CG6380 INTERGENIC
3R	9121917	3R_9121917_SNP [dm3] 3R_13296195_SNP [dm6]	G	C	2.193e^-4	0.924	SYNONYMOUS_CODING CG8773
3R	9121962	3R_9121962_SNP [dm3] 3R_13296240_SNP [dm6]	A	G	2.193e^-4	0.924	SYNONYMOUS_CODING CG8773
3L	8808942	3L_8808942_INS [dm3] 3L_8815842_INS [dm6]	T	TT	2.193e^-4	0.924	INTERGENIC
3L	436943	3L_436943_SNP [dm3] 3L_436943_SNP [dm6]	A	C	2.194e^-4	0.924	INTRON klar
X	494450	X_494450_SNP [dm3] X_600417_SNP [dm6]	C	T	2.196e^-4	0.924	INTRON CG13366
3L	9106098	3L_9106098_INS [dm3] 3L_9112998_INS [dm6]	T	TTGT	2.200e^-4	0.924	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9233922	2R_9233922_SNP [dm3] 2R_13346417_SNP [dm6]	A	C	2.203e^-4	0.924	INTRON CR44206
4	553077	4_553077_SNP [dm3] 4_532451_SNP [dm6]	T	C	2.211e^-4	0.924	INTRON zfh2
3R	9711950	3R_9711950_SNP [dm3] 3R_13886228_SNP [dm6]	A	T	2.221e^-4	0.924	INTERGENIC
3R	16930190	3R_16930190_SNP [dm3] 3R_21104468_SNP [dm6]	A	C	2.222e^-4	0.924	DOWNSTREAM Sec15 INTRON CG5745
2R	9695977	2R_9695977_DEL [dm3] 2R_13808472_DEL [dm6]	TATTATTATTATTTTTATTA...	G	2.228e^-4	0.924	INTRON stj
3L	9626596	3L_9626596_SNP [dm3] 3L_9633496_SNP [dm6]	C	T	2.230e^-4	0.924	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
X	1419208	X_1419208_SNP [dm3] X_1525175_SNP [dm6]	C	G	2.232e^-4	0.924	INTRON Mur2B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11163176	2L_11163176_SNP [dm3] 2L_11163176_SNP [dm6]	A	T	2.238e^-4	0.924	INTRON Ca-beta
3L	9392454	3L_9392454_SNP [dm3] 3L_9399354_SNP [dm6]	C	A	2.243e^-4	0.924	UPSTREAM CG4080 DOWNSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2659091	2L_2659091_SNP [dm3] 2L_2659091_SNP [dm6]	A	T	2.244e^-4	0.924	INTERGENIC
X	6080135	X_6080135_SNP [dm3] X_6186102_SNP [dm6]	T	C	2.254e^-4	0.924	INTRON Ca-alpha1T
3L	2661252	3L_2661252_SNP [dm3] 3L_2661252_SNP [dm6]	C	T	2.256e^-4	0.924	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3R	26308857	3R_26308857_SNP [dm3] 3R_30483135_SNP [dm6]	A	T	2.256e^-4	0.924	INTRON PH4alphaEFB
3L	1879642	3L_1879642_SNP [dm3] 3L_1879642_SNP [dm6]	C	T	2.260e^-4	0.924	INTRON CG13937
X	4320373	X_4320373_SNP [dm3] X_4426340_SNP [dm6]	G	A	2.267e^-4	0.924	UPSTREAM bi INTRON CR32773 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2R	7518711	2R_7518711_SNP [dm3] 2R_11631206_SNP [dm6]	T	G	2.282e^-4	0.924	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	2.290e^-4	0.924	DOWNSTREAM ntc INTRON CG32264
X	470153	X_470153_SNP [dm3] X_576120_SNP [dm6]	G	C	2.290e^-4	0.924	UTR_3_PRIME Appl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	15443301	2L_15443301_SNP [dm3] 2L_15443301_SNP [dm6]	G	C	2.291e^-4	0.924	DOWNSTREAM CR44862 INTERGENIC
3R	22984706	3R_22984706_SNP [dm3] 3R_27158984_SNP [dm6]	G	T	2.299e^-4	0.924	INTRON grass	TF binding site mE1_TFBS_cad
2R	17457316	2R_17457316_SNP [dm3] 2R_21569811_SNP [dm6]	C	A	2.302e^-4	0.924	INTRON CG10440
2R	19797137	2R_19797137_SNP [dm3] 2R_23909614_SNP [dm6]	T	C	2.302e^-4	0.924	UPSTREAM CR44806 & 1 other INTRON kcc	TF binding site mE1_TFBS_HSA
3R	16983791	3R_16983791_SNP [dm3] 3R_21158069_SNP [dm6]	C	T	2.305e^-4	0.924	INTRON SNF4Agamma
3L	10848145	3L_10848145_SNP [dm3] 3L_10855045_SNP [dm6]	C	G	2.306e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12424368	X_12424368_SNP [dm3] X_12530335_SNP [dm6]	G	A	2.323e^-4	0.924	INTRON CG43921
2R	6676103	2R_6676103_SNP [dm3] 2R_10788598_SNP [dm6]	G	A	2.326e^-4	0.924	INTRON CG33144
X	5406773	X_5406773_SNP [dm3] X_5512740_SNP [dm6]	A	G	2.329e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20593876	X_20593876_SNP [dm3] X_20722849_SNP [dm6]	A	T	2.334e^-4	0.924	INTERGENIC
3L	3780051	3L_3780051_SNP [dm3] 3L_3780051_SNP [dm6]	A	C	2.340e^-4	0.924	INTRON CG32264
X	482577	X_482577_SNP [dm3] X_588544_SNP [dm6]	T	C	2.345e^-4	0.924	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12280396	X_12280396_SNP [dm3] X_12386363_SNP [dm6]	T	G	2.353e^-4	0.924	INTERGENIC
2R	16251885	2R_16251885_SNP [dm3] 2R_20364380_SNP [dm6]	T	G	2.354e^-4	0.924	INTERGENIC
X	9332932	X_9332932_SNP [dm3] X_9438899_SNP [dm6]	G	T	2.361e^-4	0.924	INTRON mgl
2L	2461883	2L_2461883_SNP [dm3] 2L_2461883_SNP [dm6]	C	A	2.361e^-4	0.924	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5879297	X_5879297_SNP [dm3] X_5985264_SNP [dm6]	G	A	2.364e^-4	0.924	SYNONYMOUS_CODING Grip	TF binding site mE1_TFBS_chinmo
2L	3457390	2L_3457390_SNP [dm3] 2L_3457390_SNP [dm6]	C	G	2.368e^-4	0.924	UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15445294	3R_15445294_INS [dm3] 3R_19619572_INS [dm6]	T	TT	2.369e^-4	0.924	INTRON CG6231
2R	17799780	2R_17799780_SNP [dm3] 2R_21912275_SNP [dm6]	C	T	2.372e^-4	0.924	INTRON Fili
3L	12051615	3L_12051615_SNP [dm3] 3L_12058515_SNP [dm6]	C	T	2.373e^-4	0.924	INTRON rols
3R	23885128	3R_23885128_SNP [dm3] 3R_28059406_SNP [dm6]	A	G	2.375e^-4	0.924	INTRON CG34362
X	510560	X_510560_SNP [dm3] X_616527_SNP [dm6]	G	T	2.375e^-4	0.924	INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3549916	2L_3549916_SNP [dm3] 2L_3549916_SNP [dm6]	G	A	2.379e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4070708	3L_4070708_SNP [dm3] 3L_4070708_SNP [dm6]	C	T	2.381e^-4	0.924	DOWNSTREAM CG32259 INTRON wit
3L	3077909	3L_3077909_SNP [dm3] 3L_3077909_SNP [dm6]	C	T	2.381e^-4	0.924	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25293717	3R_25293717_SNP [dm3] 3R_29467995_SNP [dm6]	A	T	2.383e^-4	0.924	INTRON Ptp99A
2R	14186311	2R_14186311_SNP [dm3] 2R_18298806_SNP [dm6]	G	T	2.386e^-4	0.924	NON_SYNONYMOUS_CODING CG18539 UPSTREAM CG18540 INTRON sbb
3L	9627055	3L_9627055_SNP [dm3] 3L_9633955_SNP [dm6]	G	A	2.420e^-4	0.924	INTRON fry	TF binding site mE1_TFBS_cad
2L	3818089	2L_3818089_SNP [dm3] 2L_3818089_SNP [dm6]	G	A	2.420e^-4	0.924	EXON CR44077	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11218013	2R_11218013_SNP [dm3] 2R_15330508_SNP [dm6]	C	A	2.421e^-4	0.924	UPSTREAM Hr51 EXON CR44371	TF binding site BDTNP1_TFBS_dl
2L	714159	2L_714159_SNP [dm3] 2L_714159_SNP [dm6]	C	A	2.427e^-4	0.924	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14288495	2R_14288495_SNP [dm3] 2R_18400990_SNP [dm6]	G	T	2.429e^-4	0.924	NON_SYNONYMOUS_CODING GstE3 UPSTREAM CR43687 DOWNSTREAM GstE2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9895063	2R_9895063_SNP [dm3] 2R_14007558_SNP [dm6]	G	A	2.434e^-4	0.924	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	20683288	X_20683288_SNP [dm3] X_20812261_SNP [dm6]	C	T	2.441e^-4	0.924	INTRON shakB
3L	12046946	3L_12046946_SNP [dm3] 3L_12053846_SNP [dm6]	C	A	2.443e^-4	0.924	INTRON rols	silencer mE1_HDAC_PRE
X	1450002	X_1450002_SNP [dm3] X_1555969_SNP [dm6]	A	G	2.451e^-4	0.924	NON_SYNONYMOUS_CODING Mur2B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	717018	2L_717018_SNP [dm3] 2L_717018_SNP [dm6]	C	G	2.457e^-4	0.924	INTERGENIC
X	12452676	X_12452676_SNP [dm3] X_12558643_SNP [dm6]	T	G	2.459e^-4	0.924	INTRON CG43921
2R	9555842	2R_9555842_SNP [dm3] 2R_13668337_SNP [dm6]	C	G	2.468e^-4	0.924	SYNONYMOUS_CODING CG18368 DOWNSTREAM CG13337 INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16931831	2L_16931831_SNP [dm3] 2L_16931831_SNP [dm6]	T	C	2.469e^-4	0.924	INTERGENIC
2R	13298764	2R_13298764_SNP [dm3] 2R_17411259_SNP [dm6]	G	A	2.475e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15954645	2L_15954645_SNP [dm3] 2L_15954645_SNP [dm6]	C	T	2.476e^-4	0.924	INTRON beat-Ib	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	14147150	3R_14147150_SNP [dm3] 3R_18321428_SNP [dm6]	G	C	2.486e^-4	0.924	INTRON CG31235
3R	25692153	3R_25692153_SNP [dm3] 3R_29866431_SNP [dm6]	G	T	2.486e^-4	0.924	UPSTREAM Zip99C INTRON Zip99C
X	17908516	X_17908516_SNP [dm3] X_18014483_SNP [dm6]	G	A	2.487e^-4	0.924	SPLICE_SITE_REGION Sh UTR_5_PRIME Sh INTRON Sh
3R	26310020	3R_26310020_SNP [dm3] 3R_30484298_SNP [dm6]	C	A	2.500e^-4	0.924	NON_SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4525261	2R_4525261_SNP [dm3] 2R_8637756_SNP [dm6]	A	G	2.502e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4070695	3L_4070695_SNP [dm3] 3L_4070695_SNP [dm6]	C	T	2.507e^-4	0.924	DOWNSTREAM CG32259 INTRON wit
2L	11701982	2L_11701982_SNP [dm3] 2L_11701982_SNP [dm6]	A	G	2.510e^-4	0.924	INTERGENIC
2L	9323558	2L_9323558_SNP [dm3] 2L_9323558_SNP [dm6]	C	A	2.512e^-4	0.924	INTERGENIC
3R	26310391	3R_26310391_SNP [dm3] 3R_30484669_SNP [dm6]	C	T	2.519e^-4	0.924	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18269793	2R_18269793_SNP [dm3] 2R_22382288_SNP [dm6]	C	T	2.520e^-4	0.924	SYNONYMOUS_CODING wrapper UPSTREAM CG13506
2L	11151059	2L_11151059_SNP [dm3] 2L_11151059_SNP [dm6]	C	T	2.535e^-4	0.924	DOWNSTREAM CG6287 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	16177102	2L_16177102_SNP [dm3] 2L_16177102_SNP [dm6]	T	C	2.536e^-4	0.924	INTRON Ca-alpha1D
3R	12047733	3R_12047733_INS [dm3] 3R_16222011_INS [dm6]	T	TT	2.536e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9909155	3R_9909155_SNP [dm3] 3R_14083433_SNP [dm6]	C	A	2.539e^-4	0.924	INTRON foxo
2L	6831219	2L_6831219_SNP [dm3] 2L_6831219_SNP [dm6]	A	G	2.542e^-4	0.924	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18078354	3L_18078354_SNP [dm3] 3L_18085254_SNP [dm6]	G	A	2.546e^-4	0.924	DOWNSTREAM CR32194 EXON CR43253
2L	1504286	2L_1504286_SNP [dm3] 2L_1504286_SNP [dm6]	A	C	2.548e^-4	0.924	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3260136	2L_3260136_SNP [dm3] 2L_3260136_SNP [dm6]	A	G	2.564e^-4	0.924	DOWNSTREAM CR45337 INTERGENIC
2R	13784161	2R_13784161_SNP [dm3] 2R_17896656_SNP [dm6]	T	G	2.565e^-4	0.924	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2946274	X_2946274_SNP [dm3] X_3052241_SNP [dm6]	T	A	2.565e^-4	0.924	INTRON kirre
3R	17393835	3R_17393835_SNP [dm3] 3R_21568113_SNP [dm6]	T	C	2.572e^-4	0.924	INTRON CG15498
3L	9627046	3L_9627046_SNP [dm3] 3L_9633946_SNP [dm6]	G	A	2.578e^-4	0.924	INTRON fry	TF binding site mE1_TFBS_cad
3L	909000	3L_909000_SNP [dm3] 3L_909000_SNP [dm6]	G	A	2.589e^-4	0.924	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1376829	X_1376829_SNP [dm3] X_1482796_SNP [dm6]	G	A	2.594e^-4	0.924	SYNONYMOUS_CODING sta UPSTREAM inc & 2 others DOWNSTREAM Nmdar2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	11732969	2R_11732969_SNP [dm3] 2R_15845464_SNP [dm6]	G	A	2.596e^-4	0.924	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10296100	3R_10296100_SNP [dm3] 3R_14470378_SNP [dm6]	G	C	2.597e^-4	0.924	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	433820	3L_433820_SNP [dm3] 3L_433820_SNP [dm6]	C	A	2.606e^-4	0.924	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14989289	3L_14989289_SNP [dm3] 3L_14996189_SNP [dm6]	C	T	2.625e^-4	0.924	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26368983	3R_26368983_SNP [dm3] 3R_30543261_SNP [dm6]	C	A	2.629e^-4	0.924	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9966134	3L_9966134_SNP [dm3] 3L_9973034_SNP [dm6]	A	T	2.635e^-4	0.924	START_GAINED vnc UTR_5_PRIME vnc UPSTREAM CG6674 INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	7287272	2R_7287272_SNP [dm3] 2R_11399767_SNP [dm6]	G	A	2.637e^-4	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6660105	2R_6660105_SNP [dm3] 2R_10772600_SNP [dm6]	C	T	2.638e^-4	0.924	INTRON CG33144
2L	17756442	2L_17756442_SNP [dm3] 2L_17756442_SNP [dm6]	T	C	2.643e^-4	0.924	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17756443	2L_17756443_SNP [dm3] 2L_17756443_SNP [dm6]	A	T	2.643e^-4	0.924	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15968752	3L_15968752_SNP [dm3] 3L_15975652_SNP [dm6]	G	C	2.644e^-4	0.924	SYNONYMOUS_CODING CG17026 INTRON brm
3L	1371118	3L_1371118_SNP [dm3] 3L_1371118_SNP [dm6]	A	T	2.647e^-4	0.924	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
X	512080	X_512080_SNP [dm3] X_618047_SNP [dm6]	T	A	2.651e^-4	0.924	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	18551428	2L_18551428_SNP [dm3] 2L_18551428_SNP [dm6]	G	C	2.655e^-4	0.924	INTRON Pde11
2R	9872410	2R_9872410_INS [dm3] 2R_13984905_INS [dm6]	T	TT	2.657e^-4	0.924	UTR_3_PRIME RN-tre DOWNSTREAM CG8067	TF binding site mE1_TFBS_cad
3L	3940604	3L_3940604_SNP [dm3] 3L_3940604_SNP [dm6]	T	C	2.658e^-4	0.924	UPSTREAM CG12766 DOWNSTREAM CG10863 EXON CR43916	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	8927428	3R_8927428_SNP [dm3] 3R_13101706_SNP [dm6]	A	G	2.662e^-4	0.924	INTRON timeout
3L	11435993	3L_11435993_SNP [dm3] 3L_11442893_SNP [dm6]	T	A	2.665e^-4	0.924	INTERGENIC
3R	26368979	3R_26368979_SNP [dm3] 3R_30543257_SNP [dm6]	A	C	2.674e^-4	0.924	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1437148	2L_1437148_SNP [dm3] 2L_1437148_SNP [dm6]	A	C	2.677e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11037319	2R_11037319_DEL [dm3] 2R_15149814_DEL [dm6]	GCTGAC	G	2.690e^-4	0.924	DOWNSTREAM CG7544 INTERGENIC
2R	6669750	2R_6669750_SNP [dm3] 2R_10782245_SNP [dm6]	T	A	2.695e^-4	0.924	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3443418	2L_3443418_SNP [dm3] 2L_3443418_SNP [dm6]	G	A	2.698e^-4	0.924	INTERGENIC
2L	16107462	2L_16107462_SNP [dm3] 2L_16107462_SNP [dm6]	A	G	2.706e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16931862	2L_16931862_SNP [dm3] 2L_16931862_SNP [dm6]	T	C	2.710e^-4	0.924	INTERGENIC
2L	16927336	2L_16927336_SNP [dm3] 2L_16927336_SNP [dm6]	A	G	2.712e^-4	0.924	INTERGENIC
3L	3893513	3L_3893513_SNP [dm3] 3L_3893513_SNP [dm6]	C	A	2.729e^-4	0.924	UPSTREAM snRNA:U11 INTRON Fie
X	13040392	X_13040392_SNP [dm3] X_13146359_SNP [dm6]	A	G	2.731e^-4	0.924	INTRON CG32645
2R	10633764	2R_10633764_SNP [dm3] 2R_14746259_SNP [dm6]	T	A	2.731e^-4	0.924	UTR_3_PRIME Dro UPSTREAM CG12858
2L	7319554	2L_7319554_SNP [dm3] 2L_7319554_SNP [dm6]	T	A	2.732e^-4	0.924	INTERGENIC
X	2946321	X_2946321_SNP [dm3] X_3052288_SNP [dm6]	G	T	2.735e^-4	0.924	INTRON kirre
2L	9169026	2L_9169026_SNP [dm3] 2L_9169026_SNP [dm6]	C	T	2.737e^-4	0.924	INTRON tai
2R	17177662	2R_17177662_SNP [dm3] 2R_21290157_SNP [dm6]	G	A	2.740e^-4	0.924	DOWNSTREAM CG30392 INTRON CG10505
X	14768754	X_14768754_SNP [dm3] X_14874721_SNP [dm6]	C	T	2.745e^-4	0.924	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2L	17293208	2L_17293208_SNP [dm3] 2L_17293208_SNP [dm6]	C	T	2.750e^-4	0.924	INTERGENIC
3L	2678887	3L_2678887_SNP [dm3] 3L_2678887_SNP [dm6]	G	A	2.755e^-4	0.924	INTRON Fife	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14551134	2L_14551134_SNP [dm3] 2L_14551134_SNP [dm6]	C	T	2.767e^-4	0.924	UPSTREAM CR44853 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2661246	3L_2661246_SNP [dm3] 3L_2661246_SNP [dm6]	C	T	2.771e^-4	0.924	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
2R	13743996	2R_13743996_SNP [dm3] 2R_17856491_SNP [dm6]	G	A	2.786e^-4	0.924	UTR_5_PRIME olf186-F INTRON olf186-F	TF binding site mE1_TFBS_Trl
3R	14147138	3R_14147138_SNP [dm3] 3R_18321416_SNP [dm6]	A	G	2.786e^-4	0.924	INTRON CG31235
3R	14147143	3R_14147143_SNP [dm3] 3R_18321421_SNP [dm6]	T	G	2.786e^-4	0.924	INTRON CG31235
3R	14147154	3R_14147154_SNP [dm3] 3R_18321432_SNP [dm6]	G	T	2.786e^-4	0.924	INTRON CG31235
3R	14147159	3R_14147159_SNP [dm3] 3R_18321437_SNP [dm6]	T	A	2.786e^-4	0.924	INTRON CG31235
3R	14147160	3R_14147160_SNP [dm3] 3R_18321438_SNP [dm6]	G	T	2.786e^-4	0.924	INTRON CG31235
3R	14147175	3R_14147175_SNP [dm3] 3R_18321453_SNP [dm6]	G	A	2.786e^-4	0.924	INTRON CG31235
3R	14147182	3R_14147182_DEL [dm3] 3R_18321460_DEL [dm6]	AT	A	2.786e^-4	0.924	INTRON CG31235
3R	26338254	3R_26338254_SNP [dm3] 3R_30512532_SNP [dm6]	C	G	2.792e^-4	0.924	UPSTREAM PH4alphaNE2 INTRON CG31524
X	6655379	X_6655379_SNP [dm3] X_6761346_SNP [dm6]	T	C	2.792e^-4	0.924	SYNONYMOUS_CODING CG14438	TF binding site mE1_TFBS_sens
X	515798	X_515798_SNP [dm3] X_621765_SNP [dm6]	C	T	2.793e^-4	0.924	UTR_5_PRIME mod_r_ UPSTREAM mod_r_ & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	26309938	3R_26309938_SNP [dm3] 3R_30484216_SNP [dm6]	C	T	2.793e^-4	0.924	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1327089	3L_1327089_SNP [dm3] 3L_1327089_SNP [dm6]	A	G	2.803e^-4	0.924	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	26315809	3R_26315809_SNP [dm3] 3R_30490087_SNP [dm6]	G	C	2.810e^-4	0.924	UTR_5_PRIME PH4alphaSG2 DOWNSTREAM Jon99Fi
2R	13682125	2R_13682125_SNP [dm3] 2R_17794620_SNP [dm6]	A	G	2.815e^-4	0.924	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14586528	3R_14586528_SNP [dm3] 3R_18760806_SNP [dm6]	G	A	2.816e^-4	0.924	SYNONYMOUS_CODING CG7720
2L	3990633	2L_3990633_SNP [dm3] 2L_3990633_SNP [dm6]	C	G	2.817e^-4	0.924	INTRON fred
3R	26309955	3R_26309955_SNP [dm3] 3R_30484233_SNP [dm6]	T	C	2.825e^-4	0.924	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10199746	3R_10199746_SNP [dm3] 3R_14374024_SNP [dm6]	A	T	2.828e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9115240	3R_9115240_SNP [dm3] 3R_13289518_SNP [dm6]	T	C	2.842e^-4	0.924	UPSTREAM CG15887 INTERGENIC
X	9214985	X_9214985_SNP [dm3] X_9320952_SNP [dm6]	C	T	2.859e^-4	0.924	INTRON c12.2	TF binding site mE1_TFBS_cad
3L	18159432	3L_18159432_SNP [dm3] 3L_18166332_SNP [dm6]	A	G	2.870e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	1402862	2R_1402862_SNP [dm3] 2R_5515357_SNP [dm6]	G	C	2.870e^-4	0.924	INTRON CG30438
X	2715827	X_2715827_SNP [dm3] X_2821794_SNP [dm6]	A	G	2.874e^-4	0.924	INTRON kirre
2R	12338934	2R_12338934_SNP [dm3] 2R_16451429_SNP [dm6]	C	A	2.875e^-4	0.924	INTERGENIC
2L	3990534	2L_3990534_SNP [dm3] 2L_3990534_SNP [dm6]	T	C	2.881e^-4	0.924	INTRON fred
3L	1368889	3L_1368889_DEL [dm3] 3L_1368889_DEL [dm6]	AA	A	2.886e^-4	0.924	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7280102	3L_7280102_SNP [dm3] 3L_7287002_SNP [dm6]	T	A	2.891e^-4	0.924	INTRON unc-13-4A
2R	11451797	2R_11451797_SNP [dm3] 2R_15564292_SNP [dm6]	A	T	2.894e^-4	0.924	NON_SYNONYMOUS_CODING CG8195
2R	11217722	2R_11217722_SNP [dm3] 2R_15330217_SNP [dm6]	G	T	2.898e^-4	0.924	DOWNSTREAM CR44371 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18398667	2L_18398667_SNP [dm3] 2L_18398667_SNP [dm6]	C	A	2.900e^-4	0.924	INTERGENIC
2L	7319496	2L_7319496_SNP [dm3] 2L_7319496_SNP [dm6]	T	A	2.901e^-4	0.924	INTERGENIC
X	481056	X_481056_SNP [dm3] X_587023_SNP [dm6]	T	C	2.904e^-4	0.924	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12251852	2R_12251852_SNP [dm3] 2R_16364347_SNP [dm6]	G	A	2.907e^-4	0.924	START_GAINED CG15711 UTR_5_PRIME CG15711 UPSTREAM CG15711 DOWNSTREAM CG6262
3R	23884703	3R_23884703_SNP [dm3] 3R_28058981_SNP [dm6]	A	G	2.908e^-4	0.924	INTRON CG34362
X	5694022	X_5694022_SNP [dm3] X_5799989_SNP [dm6]	C	T	2.927e^-4	0.924	INTERGENIC
3R	10204562	3R_10204562_SNP [dm3] 3R_14378840_SNP [dm6]	T	C	2.929e^-4	0.924	INTERGENIC
2L	7319508	2L_7319508_SNP [dm3] 2L_7319508_SNP [dm6]	G	A	2.934e^-4	0.924	INTERGENIC
2L	7342432	2L_7342432_SNP [dm3] 2L_7342432_SNP [dm6]	T	A	2.938e^-4	0.924	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10862926	2R_10862926_SNP [dm3] 2R_14975421_SNP [dm6]	C	T	2.939e^-4	0.924	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8965514	3L_8965514_SNP [dm3] 3L_8972414_SNP [dm6]	A	G	2.946e^-4	0.924	SYNONYMOUS_CODING pix DOWNSTREAM CG5026
2R	6878261	2R_6878261_SNP [dm3] 2R_10990756_SNP [dm6]	G	A	2.950e^-4	0.924	SYNONYMOUS_CODING luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12971646	X_12971646_SNP [dm3] X_13077613_SNP [dm6]	A	T	2.963e^-4	0.924	UTR_3_PRIME rad	TF binding site mE1_TFBS_kn
2L	9911923	2L_9911923_SNP [dm3] 2L_9911923_SNP [dm6]	G	A	2.965e^-4	0.924	UPSTREAM Srp54 INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14585641	2L_14585641_SNP [dm3] 2L_14585641_SNP [dm6]	G	A	2.973e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	20583050	3R_20583050_SNP [dm3] 3R_24757328_SNP [dm6]	A	G	2.974e^-4	0.924	NON_SYNONYMOUS_CODING asp
X	16843775	X_16843775_SNP [dm3] X_16949742_SNP [dm6]	T	A	2.976e^-4	0.924	INTRON RhoGAP15B
3R	16725541	3R_16725541_SNP [dm3] 3R_20899819_SNP [dm6]	G	A	2.983e^-4	0.924	INTERGENIC
2L	4787458	2L_4787458_SNP [dm3] 2L_4787458_SNP [dm6]	A	G	3.011e^-4	0.924	INTRON CG15630
2R	17460517	2R_17460517_SNP [dm3] 2R_21573012_SNP [dm6]	C	T	3.014e^-4	0.924	INTRON CG10440
2L	9412596	2L_9412596_SNP [dm3] 2L_9412596_SNP [dm6]	T	C	3.016e^-4	0.924	INTRON Shawl
3R	14147167	3R_14147167_SNP [dm3] 3R_18321445_SNP [dm6]	G	T	3.018e^-4	0.924	INTRON CG31235
2L	8360566	2L_8360566_SNP [dm3] 2L_8360566_SNP [dm6]	C	T	3.020e^-4	0.924	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11307479	3L_11307479_SNP [dm3] 3L_11314379_SNP [dm6]	A	T	3.022e^-4	0.924	UPSTREAM CR44361 DOWNSTREAM CG7573 INTERGENIC
3L	18159493	3L_18159493_SNP [dm3] 3L_18166393_SNP [dm6]	A	T	3.023e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16931745	3R_16931745_SNP [dm3] 3R_21106023_SNP [dm6]	G	A	3.024e^-4	0.924	SYNONYMOUS_CODING Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11893618	3L_11893618_SNP [dm3] 3L_11900518_SNP [dm6]	G	A	3.027e^-4	0.924	DOWNSTREAM CR43624 INTRON CG44837
3L	8410907	3L_8410907_SNP [dm3] 3L_8417807_SNP [dm6]	T	A	3.033e^-4	0.924	SYNONYMOUS_CODING CG32354	TF binding site mE1_TFBS_chinmo
2R	12278192	2R_12278192_SNP [dm3] 2R_16390687_SNP [dm6]	T	C	3.035e^-4	0.924	INTRON Sema-2b
X	12479714	X_12479714_DEL [dm3] X_12585681_DEL [dm6]	CATTACAC	C	3.036e^-4	0.924	UTR_3_PRIME LIMK1
3R	14720514	3R_14720514_SNP [dm3] 3R_18894792_SNP [dm6]	C	T	3.036e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1679506	X_1679506_SNP [dm3] X_1785473_SNP [dm6]	G	T	3.037e^-4	0.924	UTR_3_PRIME Adar INTRON CG42666
3L	7432933	3L_7432933_SNP [dm3] 3L_7439833_SNP [dm6]	G	A	3.044e^-4	0.924	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2R	16696880	2R_16696880_SNP [dm3] 2R_20809375_SNP [dm6]	C	A	3.046e^-4	0.924	INTERGENIC
2R	16147008	2R_16147008_SNP [dm3] 2R_20259503_SNP [dm6]	G	A	3.055e^-4	0.924	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7040853	2R_7040853_INS [dm3] 2R_11153348_INS [dm6]	G	GCACTCGTTCG...	3.069e^-4	0.924	INTRON CG13229
X	17907795	X_17907795_SNP [dm3] X_18013762_SNP [dm6]	A	G	3.080e^-4	0.924	INTRON Sh
2L	10426266	2L_10426266_SNP [dm3] 2L_10426266_SNP [dm6]	C	T	3.085e^-4	0.924	UPSTREAM KdelR DOWNSTREAM CG5168 INTRON SmB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10923391	3L_10923391_SNP [dm3] 3L_10930291_SNP [dm6]	C	A	3.090e^-4	0.924	INTERGENIC
2R	19627887	2R_19627887_SNP [dm3] 2R_23740364_SNP [dm6]	A	G	3.101e^-4	0.924	INTRON egl
2L	3849682	2L_3849682_SNP [dm3] 2L_3849682_SNP [dm6]	A	T	3.107e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	1580126	3L_1580126_SNP [dm3] 3L_1580126_SNP [dm6]	A	G	3.109e^-4	0.924	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14598957	2L_14598957_SNP [dm3] 2L_14598957_SNP [dm6]	T	C	3.110e^-4	0.924	UPSTREAM tRNA:P:35Bc DOWNSTREAM osp & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13061741	3L_13061741_SNP [dm3] 3L_13068641_SNP [dm6]	G	T	3.116e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	17021417	X_17021417_SNP [dm3] X_17127384_SNP [dm6]	A	C	3.123e^-4	0.924	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
2L	16104474	2L_16104474_SNP [dm3] 2L_16104474_SNP [dm6]	G	T	3.136e^-4	0.924	INTERGENIC
3R	20591168	3R_20591168_SNP [dm3] 3R_24765446_SNP [dm6]	C	G	3.140e^-4	0.924	UPSTREAM AstA INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	512683	X_512683_SNP [dm3] X_618650_SNP [dm6]	T	C	3.148e^-4	0.924	INTRON CG13366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens
3L	18145468	3L_18145468_SNP [dm3] 3L_18152368_SNP [dm6]	C	T	3.149e^-4	0.924	INTRON CG7330
3R	26295477	3R_26295477_SNP [dm3] 3R_30469755_SNP [dm6]	G	T	3.152e^-4	0.924	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
3L	12055078	3L_12055078_INS [dm3] 3L_12061978_INS [dm6]	T	TT	3.155e^-4	0.924	INTRON rols	TF binding site mE1_TFBS_cad
2R	11280019	2R_11280019_SNP [dm3] 2R_15392514_SNP [dm6]	T	C	3.157e^-4	0.924	INTERGENIC
2R	9344914	2R_9344914_SNP [dm3] 2R_13457409_SNP [dm6]	T	C	3.163e^-4	0.924	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3991688	2L_3991688_SNP [dm3] 2L_3991688_SNP [dm6]	C	A	3.164e^-4	0.924	UTR_5_PRIME fred	TF binding site mE1_TFBS_Trl
3L	429032	3L_429032_SNP [dm3] 3L_429032_SNP [dm6]	C	A	3.166e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15445314	3R_15445314_SNP [dm3] 3R_19619592_SNP [dm6]	T	C	3.175e^-4	0.924	INTRON CG6231
2R	16423292	2R_16423292_SNP [dm3] 2R_20535787_SNP [dm6]	T	C	3.175e^-4	0.924	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
2L	3433284	2L_3433284_SNP [dm3] 2L_3433284_SNP [dm6]	G	A	3.176e^-4	0.924	INTERGENIC
X	1376457	X_1376457_SNP [dm3] X_1482424_SNP [dm6]	C	T	3.192e^-4	0.924	SYNONYMOUS_CODING sta DOWNSTREAM snoRNA:M & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14128903	2R_14128903_SNP [dm3] 2R_18241398_SNP [dm6]	T	C	3.195e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4543850	3R_4543850_SNP [dm3] 3R_8718128_SNP [dm6]	G	A	3.205e^-4	0.924	UTR_3_PRIME CG8116 INTRON Cks85A
2R	8696161	2R_8696161_SNP [dm3] 2R_12808656_SNP [dm6]	T	A	3.223e^-4	0.924	DOWNSTREAM CG17580 INTERGENIC
2R	10087820	2R_10087820_SNP [dm3] 2R_14200315_SNP [dm6]	G	A	3.226e^-4	0.924	INTRON VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11987078	2R_11987078_SNP [dm3] 2R_16099573_SNP [dm6]	G	C	3.233e^-4	0.924	NON_SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	26310840	3R_26310840_SNP [dm3] 3R_30485118_SNP [dm6]	A	C	3.235e^-4	0.924	INTRON PH4alphaEFB
2L	12256688	2L_12256688_SNP [dm3] 2L_12256688_SNP [dm6]	G	C	3.237e^-4	0.924	INTRON aret
3L	3940590	3L_3940590_SNP [dm3] 3L_3940590_SNP [dm6]	C	T	3.238e^-4	0.924	UPSTREAM CG12766 DOWNSTREAM CG10863 EXON CR43916	TF binding site mE1_TFBS_kn
3L	9964313	3L_9964313_SNP [dm3] 3L_9971213_SNP [dm6]	A	G	3.243e^-4	0.924	SYNONYMOUS_CODING CG6674 DOWNSTREAM Nc
3R	26301269	3R_26301269_SNP [dm3] 3R_30475547_SNP [dm6]	C	T	3.254e^-4	0.924	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14281116	2R_14281116_SNP [dm3] 2R_18393611_SNP [dm6]	G	T	3.259e^-4	0.924	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17907798	X_17907798_SNP [dm3] X_18013765_SNP [dm6]	A	G	3.262e^-4	0.924	INTRON Sh
2R	10543797	2R_10543797_SNP [dm3] 2R_14656292_SNP [dm6]	G	C	3.262e^-4	0.924	DOWNSTREAM Adgf-E INTERGENIC
2L	16107298	2L_16107298_SNP [dm3] 2L_16107298_SNP [dm6]	A	G	3.265e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8720936	3R_8720936_SNP [dm3] 3R_12895214_SNP [dm6]	T	C	3.266e^-4	0.924	UPSTREAM CR33929 INTERGENIC
3L	1867869	3L_1867869_SNP [dm3] 3L_1867869_SNP [dm6]	C	A	3.267e^-4	0.924	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2L	9412650	2L_9412650_SNP [dm3] 2L_9412650_SNP [dm6]	G	A	3.269e^-4	0.924	INTRON Shawl
2R	7618987	2R_7618987_SNP [dm3] 2R_11731482_SNP [dm6]	T	C	3.269e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12425685	2L_12425685_SNP [dm3] 2L_12425685_SNP [dm6]	A	G	3.289e^-4	0.924	SYNONYMOUS_CODING CG6405 DOWNSTREAM CG5446	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	3245879	2L_3245879_SNP [dm3] 2L_3245879_SNP [dm6]	A	G	3.290e^-4	0.924	INTERGENIC
2L	8743608	2L_8743608_SNP [dm3] 2L_8743608_SNP [dm6]	A	G	3.303e^-4	0.924	INTERGENIC
2R	12708455	2R_12708455_SNP [dm3] 2R_16820950_SNP [dm6]	T	C	3.312e^-4	0.924	INTERGENIC
2R	12357072	2R_12357072_SNP [dm3] 2R_16469567_SNP [dm6]	G	A	3.318e^-4	0.924	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14999785	3L_14999785_SNP [dm3] 3L_15006685_SNP [dm6]	T	C	3.333e^-4	0.924	INTRON Reck	TF binding site mE1_TFBS_HSA
X	9005288	X_9005288_SNP [dm3] X_9111255_SNP [dm6]	C	A	3.336e^-4	0.924	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5736946	3L_5736946_DEL [dm3] 3L_5743846_DEL [dm6]	TACAT	T	3.337e^-4	0.924	UTR_3_PRIME sif INTRON sif
3R	25106699	3R_25106699_SNP [dm3] 3R_29280977_SNP [dm6]	T	C	3.338e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs
2L	9437931	2L_9437931_SNP [dm3] 2L_9437931_SNP [dm6]	T	A	3.349e^-4	0.924	UTR_5_PRIME numb DOWNSTREAM RpS28-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9151450	2L_9151450_SNP [dm3] 2L_9151450_SNP [dm6]	A	T	3.354e^-4	0.924	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19654305	2R_19654305_SNP [dm3] 2R_23766782_SNP [dm6]	A	G	3.360e^-4	0.924	INTRON CG9850
3L	9413372	3L_9413372_SNP [dm3] 3L_9420272_SNP [dm6]	T	C	3.367e^-4	0.924	UPSTREAM CG3967 INTRON CG3967
3L	4900056	3L_4900056_SNP [dm3] 3L_4900056_SNP [dm6]	T	C	3.368e^-4	0.924	INTRON CG13704
2L	7221727	2L_7221727_SNP [dm3] 2L_7221727_SNP [dm6]	C	T	3.369e^-4	0.924	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
3R	15319991	3R_15319991_SNP [dm3] 3R_19494269_SNP [dm6]	A	G	3.371e^-4	0.924	SYNONYMOUS_CODING Dys
2L	12257194	2L_12257194_SNP [dm3] 2L_12257194_SNP [dm6]	G	A	3.397e^-4	0.924	INTRON aret
2L	6082096	2L_6082096_SNP [dm3] 2L_6082096_SNP [dm6]	C	T	3.399e^-4	0.924	UPSTREAM Kr-h1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14589856	2L_14589856_SNP [dm3] 2L_14589856_SNP [dm6]	G	T	3.404e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7085829	2L_7085829_SNP [dm3] 2L_7085829_SNP [dm6]	C	T	3.409e^-4	0.924	INTERGENIC
2L	7705471	2L_7705471_SNP [dm3] 2L_7705471_SNP [dm6]	C	T	3.413e^-4	0.924	SYNONYMOUS_CODING Tep3
2R	11456192	2R_11456192_SNP [dm3] 2R_15568687_SNP [dm6]	T	C	3.413e^-4	0.924	UPSTREAM CG30466 DOWNSTREAM Cdk5 INTRON Flo1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3077032	3L_3077032_SNP [dm3] 3L_3077032_SNP [dm6]	C	T	3.418e^-4	0.924	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	1931122	3L_1931122_SNP [dm3] 3L_1931122_SNP [dm6]	C	G	3.419e^-4	0.924	INTRON Dbx
2L	11244716	2L_11244716_SNP [dm3] 2L_11244716_SNP [dm6]	A	T	3.420e^-4	0.924	INTRON ab
3R	14175458	3R_14175458_SNP [dm3] 3R_18349736_SNP [dm6]	T	G	3.422e^-4	0.924	INTRON CG15803
3L	8962767	3L_8962767_SNP [dm3] 3L_8969667_SNP [dm6]	G	A	3.424e^-4	0.924	NON_SYNONYMOUS_CODING CG5026	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1338234	3L_1338234_SNP [dm3] 3L_1338234_SNP [dm6]	G	C	3.430e^-4	0.924	SYNONYMOUS_CODING l_3_02640	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16906039	2L_16906039_SNP [dm3] 2L_16906039_SNP [dm6]	G	A	3.431e^-4	0.924	SYNONYMOUS_CODING tweek
3L	608557	3L_608557_SNP [dm3] 3L_608557_SNP [dm6]	A	G	3.464e^-4	0.924	DOWNSTREAM CR44513 INTERGENIC
2L	12492807	2L_12492807_SNP [dm3] 2L_12492807_SNP [dm6]	G	T	3.464e^-4	0.924	UPSTREAM bun INTRON bun
2L	6076358	2L_6076358_SNP [dm3] 2L_6076358_SNP [dm6]	T	C	3.465e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9106134	3L_9106134_INS [dm3] 3L_9113034_INS [dm6]	A	AGCTGAAGGA	3.465e^-4	0.924	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9318720	3L_9318720_SNP [dm3] 3L_9325620_SNP [dm6]	C	T	3.467e^-4	0.924	INTERGENIC
2L	4787437	2L_4787437_SNP [dm3] 2L_4787437_SNP [dm6]	A	G	3.471e^-4	0.924	INTRON CG15630
2L	7357473	2L_7357473_INS [dm3] 2L_7357473_INS [dm6]	A	ATATAATAG	3.478e^-4	0.924	INTERGENIC
X	1679497	X_1679497_SNP [dm3] X_1785464_SNP [dm6]	A	T	3.483e^-4	0.924	UTR_3_PRIME Adar INTRON CG42666
X	495054	X_495054_SNP [dm3] X_601021_SNP [dm6]	A	T	3.487e^-4	0.924	INTRON CG13366
X	15893916	X_15893916_SNP [dm3] X_15999883_SNP [dm6]	C	A	3.489e^-4	0.924	DOWNSTREAM vap & 1 other INTERGENIC
3R	26814662	3R_26814662_SNP [dm3] 3R_30988940_SNP [dm6]	G	A	3.491e^-4	0.924	DOWNSTREAM CG31008 INTRON 5-HT7
3L	7799077	3L_7799077_SNP [dm3] 3L_7805977_SNP [dm6]	T	A	3.498e^-4	0.924	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	11594652	3R_11594652_SNP [dm3] 3R_15768930_SNP [dm6]	T	G	3.503e^-4	0.924	INTERGENIC
3L	9809065	3L_9809065_DEL [dm3] 3L_9815965_DEL [dm6]	ATGAAAA	A	3.507e^-4	0.924	UPSTREAM CG43897 INTRON CG43897
3L	3056968	3L_3056968_SNP [dm3] 3L_3056968_SNP [dm6]	T	A	3.519e^-4	0.924	INTRON CG32486	TF binding site mE1_TFBS_inv
2L	9151203	2L_9151203_SNP [dm3] 2L_9151203_SNP [dm6]	C	T	3.522e^-4	0.924	UTR_5_PRIME CG32982 INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10825248	3R_10825248_SNP [dm3] 3R_14999526_SNP [dm6]	C	A	3.528e^-4	0.924	INTERGENIC
3L	1577281	3L_1577281_SNP [dm3] 3L_1577281_SNP [dm6]	T	C	3.530e^-4	0.924	DOWNSTREAM CG12004 INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17297358	2L_17297358_SNP [dm3] 2L_17297358_SNP [dm6]	C	A	3.531e^-4	0.924	INTERGENIC
3L	1327027	3L_1327027_SNP [dm3] 3L_1327027_SNP [dm6]	C	T	3.536e^-4	0.924	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	8418317	3R_8418317_SNP [dm3] 3R_12592595_SNP [dm6]	C	T	3.552e^-4	0.924	INTRON Octbeta2R
X	8210035	X_8210035_SNP [dm3] X_8316002_SNP [dm6]	T	A	3.553e^-4	0.924	INTRON nAChRalpha3
2R	14416822	2R_14416822_SNP [dm3] 2R_18529317_SNP [dm6]	G	A	3.558e^-4	0.924	INTRON CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12492784	2L_12492784_SNP [dm3] 2L_12492784_SNP [dm6]	C	T	3.566e^-4	0.924	UPSTREAM bun INTRON bun
2L	11313936	2L_11313936_SNP [dm3] 2L_11313936_SNP [dm6]	G	A	3.574e^-4	0.924	INTERGENIC
X	482357	X_482357_SNP [dm3] X_588324_SNP [dm6]	C	T	3.579e^-4	0.924	INTRON vnd & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	10647772	3L_10647772_SNP [dm3] 3L_10654672_SNP [dm6]	T	C	3.585e^-4	0.924	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
X	19367787	X_19367787_SNP [dm3] X_19473754_SNP [dm6]	T	C	3.593e^-4	0.924	DOWNSTREAM CG32533 INTERGENIC
2R	12620228	2R_12620228_SNP [dm3] 2R_16732723_SNP [dm6]	A	G	3.594e^-4	0.924	UTR_5_PRIME CG30463	TF binding site BDTNP1_TFBS_sna
2R	11862702	2R_11862702_SNP [dm3] 2R_15975197_SNP [dm6]	A	T	3.596e^-4	0.924	SYNONYMOUS_CODING Strn-Mlck
2L	9869900	2L_9869900_SNP [dm3] 2L_9869900_SNP [dm6]	G	A	3.597e^-4	0.924	UTR_5_PRIME nAChRalpha6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1323875	3L_1323875_SNP [dm3] 3L_1323875_SNP [dm6]	T	C	3.600e^-4	0.924	UPSTREAM Myo61F INTRON Myo61F & 1 other
3L	18123643	3L_18123643_SNP [dm3] 3L_18130543_SNP [dm6]	C	A	3.624e^-4	0.924	INTRON Cyp312a1
3L	852120	3L_852120_SNP [dm3] 3L_852120_SNP [dm6]	C	T	3.625e^-4	0.924	SYNONYMOUS_CODING CG13890 DOWNSTREAM dpr20
2L	12492791	2L_12492791_SNP [dm3] 2L_12492791_SNP [dm6]	T	C	3.634e^-4	0.924	UPSTREAM bun INTRON bun
2L	3601976	2L_3601976_SNP [dm3] 2L_3601976_SNP [dm6]	A	T	3.640e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	7167064	3L_7167064_SNP [dm3] 3L_7173964_SNP [dm6]	G	C	3.641e^-4	0.924	DOWNSTREAM Dscam2 INTRON Dscam2
X	17908477	X_17908477_INS [dm3] X_18014444_INS [dm6]	T	TT	3.644e^-4	0.924	UTR_5_PRIME Sh INTRON Sh
3R	14175457	3R_14175457_SNP [dm3] 3R_18349735_SNP [dm6]	A	T	3.651e^-4	0.924	INTRON CG15803
2R	12708432	2R_12708432_SNP [dm3] 2R_16820927_SNP [dm6]	C	T	3.653e^-4	0.924	INTERGENIC
3L	8438341	3L_8438341_SNP [dm3] 3L_8445241_SNP [dm6]	C	T	3.658e^-4	0.924	INTRON CG6983	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1559074	2L_1559074_SNP [dm3] 2L_1559074_SNP [dm6]	C	T	3.674e^-4	0.924	INTRON haf
2L	8662761	2L_8662761_SNP [dm3] 2L_8662761_SNP [dm6]	C	T	3.681e^-4	0.924	INTRON Sema-1a
3R	18001581	3R_18001581_SNP [dm3] 3R_22175859_SNP [dm6]	G	A	3.686e^-4	0.924	INTRON SKIP
X	13223073	X_13223073_DEL [dm3] X_13329040_DEL [dm6]	CTGC	C	3.686e^-4	0.924	UTR_3_PRIME IP3K2 UPSTREAM Jafrac1
X	17901717	X_17901717_SNP [dm3] X_18007684_SNP [dm6]	T	C	3.687e^-4	0.924	UPSTREAM CG12672 INTRON Sh
2L	15746197	2L_15746197_SNP [dm3] 2L_15746197_SNP [dm6]	C	A	3.688e^-4	0.924	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	7319505	2L_7319505_SNP [dm3] 2L_7319505_SNP [dm6]	G	T	3.698e^-4	0.924	INTERGENIC
2R	7486700	2R_7486700_SNP [dm3] 2R_11599195_SNP [dm6]	T	G	3.703e^-4	0.924	INTRON tou	TF binding site BDTNP1_TFBS_dl
3R	25457246	3R_25457246_SNP [dm3] 3R_29631524_SNP [dm6]	G	A	3.709e^-4	0.924	UTR_3_PRIME Dop1R2
2L	17297588	2L_17297588_SNP [dm3] 2L_17297588_SNP [dm6]	C	T	3.709e^-4	0.924	INTERGENIC
3R	25099647	3R_25099647_SNP [dm3] 3R_29273925_SNP [dm6]	C	T	3.712e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26325414	3R_26325414_SNP [dm3] 3R_30499692_SNP [dm6]	C	T	3.712e^-4	0.924	INTRON PH4alphaNE1
3L	418739	3L_418739_SNP [dm3] 3L_418739_SNP [dm6]	A	G	3.715e^-4	0.924	INTERGENIC
2R	9696037	2R_9696037_SNP [dm3] 2R_13808532_SNP [dm6]	A	C	3.731e^-4	0.924	INTRON stj
3R	26305024	3R_26305024_SNP [dm3] 3R_30479302_SNP [dm6]	C	T	3.734e^-4	0.924	SYNONYMOUS_CODING PH4alphaEFB DOWNSTREAM spdo
2L	7319510	2L_7319510_SNP [dm3] 2L_7319510_SNP [dm6]	A	T	3.734e^-4	0.924	INTERGENIC
3L	10965443	3L_10965443_SNP [dm3] 3L_10972343_SNP [dm6]	A	C	3.738e^-4	0.924	UPSTREAM CG14147 INTERGENIC
2R	6824167	2R_6824167_SNP [dm3] 2R_10936662_SNP [dm6]	T	A	3.739e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	14655377	X_14655377_INS [dm3] X_14761344_INS [dm6]	C	CTCCAACGAATGTCTTTTTA...	3.746e^-4	0.924	INTRON CG15890
2R	12336040	2R_12336040_SNP [dm3] 2R_16448535_SNP [dm6]	C	T	3.752e^-4	0.924	INTERGENIC
2R	6945906	2R_6945906_DEL [dm3] 2R_11058401_DEL [dm6]	ATGTA	A	3.764e^-4	0.924	INTRON luna
2R	11112660	2R_11112660_SNP [dm3] 2R_15225155_SNP [dm6]	G	C	3.767e^-4	0.924	DOWNSTREAM CG8079 INTRON Fs
2L	3709723	2L_3709723_SNP [dm3] 2L_3709723_SNP [dm6]	C	T	3.780e^-4	0.924	SYNONYMOUS_CODING cutlet
2L	3893139	2L_3893139_SNP [dm3] 2L_3893139_SNP [dm6]	T	A	3.783e^-4	0.924	INTRON capu
3L	12357879	3L_12357879_SNP [dm3] 3L_12364779_SNP [dm6]	C	T	3.785e^-4	0.924	INTERGENIC
3L	8807471	3L_8807471_SNP [dm3] 3L_8814371_SNP [dm6]	G	C	3.787e^-4	0.924	INTERGENIC
3L	872300	3L_872300_SNP [dm3] 3L_872300_SNP [dm6]	C	A	3.794e^-4	0.924	UPSTREAM CG32479 DOWNSTREAM CG12502 INTRON CG32479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4282121	2L_4282121_SNP [dm3] 2L_4282121_SNP [dm6]	T	G	3.794e^-4	0.924	UPSTREAM Art2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	5860060	2L_5860060_SNP [dm3] 2L_5860060_SNP [dm6]	C	T	3.802e^-4	0.924	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
2L	3992121	2L_3992121_SNP [dm3] 2L_3992121_SNP [dm6]	A	G	3.803e^-4	0.924	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
3R	5850648	3R_5850648_SNP [dm3] 3R_10024926_SNP [dm6]	G	C	3.819e^-4	0.924	INTRON Mical & 1 other
3L	12042590	3L_12042590_SNP [dm3] 3L_12049490_SNP [dm6]	T	C	3.821e^-4	0.924	INTRON rols
3L	512601	3L_512601_SNP [dm3] 3L_512601_SNP [dm6]	G	A	3.821e^-4	0.924	INTRON klar
3R	26295468	3R_26295468_SNP [dm3] 3R_30469746_SNP [dm6]	A	T	3.821e^-4	0.924	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
X	4092133	X_4092133_SNP [dm3] X_4198100_SNP [dm6]	G	C	3.827e^-4	0.924	INTRON Fas2
2L	6616998	2L_6616998_SNP [dm3] 2L_6616998_SNP [dm6]	C	T	3.862e^-4	0.924	UTR_3_PRIME CG11050 DOWNSTREAM CG11320
2L	21346403	2L_21346403_SNP [dm3] 2L_21346403_SNP [dm6]	A	G	3.863e^-4	0.924	INTRON Tsp39D	transposable element FlyBase
3L	10848399	3L_10848399_SNP [dm3] 3L_10855299_SNP [dm6]	T	C	3.871e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9111767	2L_9111767_SNP [dm3] 2L_9111767_SNP [dm6]	A	G	3.877e^-4	0.924	UPSTREAM Or30a INTERGENIC
3L	3806503	3L_3806503_SNP [dm3] 3L_3806503_SNP [dm6]	G	T	3.885e^-4	0.924	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16935248	3R_16935248_SNP [dm3] 3R_21109526_SNP [dm6]	T	C	3.892e^-4	0.924	NON_SYNONYMOUS_CODING rtet	TF binding site mE1_TFBS_chinmo
3R	26310390	3R_26310390_SNP [dm3] 3R_30484668_SNP [dm6]	G	A	3.894e^-4	0.924	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	638419	2L_638419_SNP [dm3] 2L_638419_SNP [dm6]	G	C	3.896e^-4	0.924	INTERGENIC
3L	8445734	3L_8445734_SNP [dm3] 3L_8452634_SNP [dm6]	T	G	3.900e^-4	0.924	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10066965	2L_10066965_SNP [dm3] 2L_10066965_SNP [dm6]	A	G	3.904e^-4	0.924	INTRON CG44153
3L	12357452	3L_12357452_SNP [dm3] 3L_12364352_SNP [dm6]	A	C	3.916e^-4	0.924	INTERGENIC
3L	609851	3L_609851_SNP [dm3] 3L_609851_SNP [dm6]	G	T	3.918e^-4	0.924	UPSTREAM CR44513 INTERGENIC
2L	12491407	2L_12491407_SNP [dm3] 2L_12491407_SNP [dm6]	T	C	3.922e^-4	0.924	INTRON bun
2L	18551473	2L_18551473_SNP [dm3] 2L_18551473_SNP [dm6]	T	C	3.924e^-4	0.924	INTRON Pde11
2L	9632756	2L_9632756_SNP [dm3] 2L_9632756_SNP [dm6]	T	G	3.926e^-4	0.924	INTERGENIC
2L	7707180	2L_7707180_SNP [dm3] 2L_7707180_SNP [dm6]	G	C	3.928e^-4	0.924	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990	TF binding site mE1_TFBS_inv
3L	9295673	3L_9295673_SNP [dm3] 3L_9302573_SNP [dm6]	A	T	3.931e^-4	0.924	INTERGENIC
2R	6678362	2R_6678362_SNP [dm3] 2R_10790857_SNP [dm6]	A	G	3.939e^-4	0.924	UPSTREAM mthl13 INTRON CG33144
2L	8335857	2L_8335857_SNP [dm3] 2L_8335857_SNP [dm6]	A	G	3.942e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1338524	3L_1338524_SNP [dm3] 3L_1338524_SNP [dm6]	T	A	3.951e^-4	0.924	NON_SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9765397	2L_9765397_INS [dm3] 2L_9765397_INS [dm6]	A	ATCTTGGGCATAA...	3.952e^-4	0.924	CODON_INSERTION ppk18 DOWNSTREAM und
3L	2205863	3L_2205863_SNP [dm3] 3L_2205863_SNP [dm6]	G	T	3.957e^-4	0.924	INTERGENIC
2L	7319514	2L_7319514_SNP [dm3] 2L_7319514_SNP [dm6]	C	A	3.958e^-4	0.924	INTERGENIC
2L	7319529	2L_7319529_INS [dm3] 2L_7319529_INS [dm6]	TCC	ATAGGAAGCAAA...	3.958e^-4	0.924	INTERGENIC
2L	7319536	2L_7319536_SNP [dm3] 2L_7319536_SNP [dm6]	A	C	3.958e^-4	0.924	INTERGENIC
2L	7319540	2L_7319540_INS [dm3] 2L_7319540_INS [dm6]	A	ACCGCATA	3.958e^-4	0.924	INTERGENIC
2L	7319542	2L_7319542_SNP [dm3] 2L_7319542_SNP [dm6]	G	C	3.958e^-4	0.924	INTERGENIC
2L	7319555	2L_7319555_INS [dm3] 2L_7319555_INS [dm6]	A	AACTGAACTGCTCCTTTAA...	3.958e^-4	0.924	INTERGENIC
3R	8545701	3R_8545701_SNP [dm3] 3R_12719979_SNP [dm6]	A	G	3.960e^-4	0.924	SYNONYMOUS_CODING Men UPSTREAM Men	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23478271	3R_23478271_SNP [dm3] 3R_27652549_SNP [dm6]	A	G	3.960e^-4	0.924	UPSTREAM RpS10a INTRON tau	TF binding site mE1_TFBS_bab1
3L	8420787	3L_8420787_SNP [dm3] 3L_8427687_SNP [dm6]	A	C	3.963e^-4	0.924	UTR_3_PRIME Cbl INTRON Cbl
2R	18611926	2R_18611926_SNP [dm3] 2R_22724421_SNP [dm6]	C	A	3.965e^-4	0.924	INTRON jbug	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
2L	12643339	2L_12643339_INS [dm3] 2L_12643339_INS [dm6]	G	GATATTGATGA...	3.986e^-4	0.924	INTRON Ref2
2R	11140623	2R_11140623_SNP [dm3] 2R_15253118_SNP [dm6]	A	G	3.988e^-4	0.924	INTRON scb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18927642	2L_18927642_SNP [dm3] 2L_18927642_SNP [dm6]	C	G	3.998e^-4	0.924	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11302442	3L_11302442_SNP [dm3] 3L_11309342_SNP [dm6]	T	G	4.000e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_gt
3R	26897917	3R_26897917_SNP [dm3] 3R_31072195_SNP [dm6]	A	G	4.003e^-4	0.924	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12134729	2R_12134729_SNP [dm3] 2R_16247224_SNP [dm6]	C	G	4.008e^-4	0.924	INTRON CngA
3L	4313814	3L_4313814_SNP [dm3] 3L_4313814_SNP [dm6]	A	G	4.013e^-4	0.924	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	4.016e^-4	0.924	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	14147157	3R_14147157_SNP [dm3] 3R_18321435_SNP [dm6]	T	C	4.027e^-4	0.924	INTRON CG31235
2L	4282119	2L_4282119_SNP [dm3] 2L_4282119_SNP [dm6]	T	C	4.029e^-4	0.924	UPSTREAM Art2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	4621277	2L_4621277_SNP [dm3] 2L_4621277_SNP [dm6]	G	T	4.033e^-4	0.924	DOWNSTREAM CR44609 INTERGENIC
2L	17534485	2L_17534485_SNP [dm3] 2L_17534485_SNP [dm6]	G	A	4.044e^-4	0.924	INTERGENIC
3L	18155853	3L_18155853_SNP [dm3] 3L_18162753_SNP [dm6]	A	T	4.051e^-4	0.924	UPSTREAM CG13699 INTERGENIC
X	16815025	X_16815025_INS [dm3] X_16920992_INS [dm6]	C	CGCAC	4.062e^-4	0.924	INTRON CG4928
3L	7432919	3L_7432919_SNP [dm3] 3L_7439819_SNP [dm6]	A	T	4.067e^-4	0.924	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
3R	991982	3R_991982_SNP [dm3] 3R_5166260_SNP [dm6]	C	T	4.068e^-4	0.924	SYNONYMOUS_CODING dpr16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6080319	X_6080319_SNP [dm3] X_6186286_SNP [dm6]	T	G	4.073e^-4	0.924	INTRON Ca-alpha1T
2L	2659134	2L_2659134_SNP [dm3] 2L_2659134_SNP [dm6]	A	T	4.074e^-4	0.924	INTERGENIC
2L	3990521	2L_3990521_SNP [dm3] 2L_3990521_SNP [dm6]	T	C	4.082e^-4	0.924	INTRON fred
3R	11604981	3R_11604981_SNP [dm3] 3R_15779259_SNP [dm6]	C	A	4.083e^-4	0.924	UPSTREAM CG5614 INTERGENIC
X	2715786	X_2715786_SNP [dm3] X_2821753_SNP [dm6]	T	G	4.086e^-4	0.924	INTRON kirre
2L	7357423	2L_7357423_SNP [dm3] 2L_7357423_SNP [dm6]	T	C	4.096e^-4	0.924	INTERGENIC
3L	11534301	3L_11534301_DEL [dm3] 3L_11541201_DEL [dm6]	AA	A	4.098e^-4	0.924	INTRON Mob2
2L	4282118	2L_4282118_SNP [dm3] 2L_4282118_SNP [dm6]	C	T	4.098e^-4	0.924	UPSTREAM Art2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	2208433	2L_2208433_SNP [dm3] 2L_2208433_SNP [dm6]	G	A	4.104e^-4	0.924	SYNONYMOUS_CODING CG33124
2R	17331885	2R_17331885_SNP [dm3] 2R_21444380_SNP [dm6]	A	T	4.106e^-4	0.924	INTRON Sdc
3R	20593915	3R_20593915_SNP [dm3] 3R_24768193_SNP [dm6]	A	G	4.106e^-4	0.924	EXON CR45650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4133505	2R_4133505_SNP [dm3] 2R_8246000_SNP [dm6]	C	T	4.106e^-4	0.924	EXON CR44446	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	10368786	3R_10368786_SNP [dm3] 3R_14543064_SNP [dm6]	A	C	4.109e^-4	0.924	INTRON Pde6
3R	26183435	3R_26183435_SNP [dm3] 3R_30357713_SNP [dm6]	G	T	4.112e^-4	0.924	UPSTREAM hdc INTRON hdc	TF binding site mE1_TFBS_chinmo
X	12768774	X_12768774_SNP [dm3] X_12874741_SNP [dm6]	G	A	4.118e^-4	0.924	INTRON Pde9
2R	13094423	2R_13094423_SNP [dm3] 2R_17206918_SNP [dm6]	A	G	4.133e^-4	0.924	INTERGENIC
X	10780857	X_10780857_SNP [dm3] X_10886824_SNP [dm6]	G	A	4.138e^-4	0.924	INTRON Ork1
3L	437289	3L_437289_SNP [dm3] 3L_437289_SNP [dm6]	G	A	4.141e^-4	0.924	INTRON klar
X	19352408	X_19352408_SNP [dm3] X_19458375_SNP [dm6]	C	T	4.141e^-4	0.924	INTRON kek5	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
2L	3991421	2L_3991421_SNP [dm3] 2L_3991421_SNP [dm6]	G	A	4.145e^-4	0.924	INTRON fred
2L	9762869	2L_9762869_SNP [dm3] 2L_9762869_SNP [dm6]	T	G	4.145e^-4	0.924	UPSTREAM und DOWNSTREAM zf30C INTRON Taf11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18132494	2L_18132494_SNP [dm3] 2L_18132494_SNP [dm6]	A	G	4.147e^-4	0.924	SYNONYMOUS_CODING kel UTR_3_PRIME kel
2L	2257032	2L_2257032_SNP [dm3] 2L_2257032_SNP [dm6]	C	T	4.149e^-4	0.924	DOWNSTREAM CR44787 INTERGENIC
2L	7319527	2L_7319527_SNP [dm3] 2L_7319527_SNP [dm6]	G	A	4.151e^-4	0.924	INTERGENIC
2R	17807712	2R_17807712_SNP [dm3] 2R_21920207_SNP [dm6]	T	A	4.151e^-4	0.924	INTRON Fili
3L	7816618	3L_7816618_SNP [dm3] 3L_7823518_SNP [dm6]	G	A	4.153e^-4	0.924	INTRON Pdp1
3L	1669325	3L_1669325_SNP [dm3] 3L_1669325_SNP [dm6]	C	T	4.153e^-4	0.924	UPSTREAM RpL23A INTRON RabX5	TF binding site BDTNP1_TFBS_dl
2R	6677623	2R_6677623_SNP [dm3] 2R_10790118_SNP [dm6]	G	T	4.163e^-4	0.924	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9336189	X_9336189_SNP [dm3] X_9442156_SNP [dm6]	G	A	4.168e^-4	0.924	INTRON mgl
3R	16935834	3R_16935834_SNP [dm3] 3R_21110112_SNP [dm6]	C	A	4.170e^-4	0.924	SYNONYMOUS_CODING rtet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15410161	3R_15410161_SNP [dm3] 3R_19584439_SNP [dm6]	A	T	4.172e^-4	0.924	INTRON Dys	TF binding site BDTNP1_TFBS_dl
2L	12524622	2L_12524622_SNP [dm3] 2L_12524622_SNP [dm6]	C	A	4.175e^-4	0.924	INTRON bun
3L	3806504	3L_3806504_SNP [dm3] 3L_3806504_SNP [dm6]	C	A	4.180e^-4	0.924	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15125265	2L_15125265_SNP [dm3] 2L_15125265_SNP [dm6]	A	G	4.183e^-4	0.924	INTERGENIC
2R	15173039	2R_15173039_SNP [dm3] 2R_19285534_SNP [dm6]	A	G	4.188e^-4	0.924	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2L	7221895	2L_7221895_SNP [dm3] 2L_7221895_SNP [dm6]	G	T	4.189e^-4	0.924	NON_SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12447256	2L_12447256_SNP [dm3] 2L_12447256_SNP [dm6]	G	A	4.196e^-4	0.924	SYNONYMOUS_CODING CG5421
2R	12360094	2R_12360094_SNP [dm3] 2R_16472589_SNP [dm6]	T	C	4.196e^-4	0.924	INTERGENIC
2L	3453996	2L_3453996_SNP [dm3] 2L_3453996_SNP [dm6]	G	A	4.198e^-4	0.924	NON_SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
3L	1368869	3L_1368869_DEL [dm3] 3L_1368869_DEL [dm6]	AA	A	4.201e^-4	0.924	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14259267	3R_14259267_SNP [dm3] 3R_18433545_SNP [dm6]	T	C	4.205e^-4	0.924	INTRON fru
3L	3624128	3L_3624128_SNP [dm3] 3L_3624128_SNP [dm6]	T	G	4.205e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6309031	2L_6309031_SNP [dm3] 2L_6309031_SNP [dm6]	C	A	4.206e^-4	0.924	SYNONYMOUS_CODING CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4361058	2L_4361058_SNP [dm3] 2L_4361058_SNP [dm6]	C	T	4.206e^-4	0.924	UPSTREAM Traf4 INTERGENIC
3L	23767783	3L_23767783_SNP [dm3] 3L_23774683_SNP [dm6]	G	A	4.207e^-4	0.924	INTERGENIC	transposable element FlyBase
2R	16251886	2R_16251886_SNP [dm3] 2R_20364381_SNP [dm6]	A	T	4.211e^-4	0.924	INTERGENIC
2L	10441858	2L_10441858_SNP [dm3] 2L_10441858_SNP [dm6]	C	T	4.211e^-4	0.924	UPSTREAM loh DOWNSTREAM CG13142 EXON CR45375
X	18391852	X_18391852_SNP [dm3] X_18497819_SNP [dm6]	C	T	4.211e^-4	0.924	INTRON GalNAc-T2
2L	9164782	2L_9164782_SNP [dm3] 2L_9164782_SNP [dm6]	T	C	4.216e^-4	0.924	SYNONYMOUS_CODING CG13108 DOWNSTREAM CG9586	TF binding site mE1_TFBS_cad
2R	11275717	2R_11275717_SNP [dm3] 2R_15388212_SNP [dm6]	C	T	4.235e^-4	0.924	DOWNSTREAM SRPK INTERGENIC
2L	7319485	2L_7319485_SNP [dm3] 2L_7319485_SNP [dm6]	C	A	4.246e^-4	0.924	INTERGENIC
2L	7319500	2L_7319500_INS [dm3] 2L_7319500_INS [dm6]	A	CGT	4.246e^-4	0.924	INTERGENIC
2R	6675855	2R_6675855_SNP [dm3] 2R_10788350_SNP [dm6]	C	T	4.248e^-4	0.924	INTRON CG33144
X	480696	X_480696_SNP [dm3] X_586663_SNP [dm6]	A	T	4.254e^-4	0.924	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7319507	2L_7319507_SNP [dm3] 2L_7319507_SNP [dm6]	C	T	4.257e^-4	0.924	INTERGENIC
2L	4860596	2L_4860596_SNP [dm3] 2L_4860596_SNP [dm6]	T	C	4.262e^-4	0.924	INTRON pog
X	18276422	X_18276422_SNP [dm3] X_18382389_SNP [dm6]	G	T	4.262e^-4	0.924	SYNONYMOUS_CODING betaCOP DOWNSTREAM CG6179	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12280212	X_12280212_SNP [dm3] X_12386179_SNP [dm6]	T	C	4.263e^-4	0.924	INTERGENIC
2L	7221148	2L_7221148_SNP [dm3] 2L_7221148_SNP [dm6]	G	A	4.265e^-4	0.924	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
2L	14585796	2L_14585796_SNP [dm3] 2L_14585796_SNP [dm6]	T	A	4.267e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	2828341	2L_2828341_SNP [dm3] 2L_2828341_SNP [dm6]	G	A	4.274e^-4	0.924	INTRON Duox
X	1450875	X_1450875_SNP [dm3] X_1556842_SNP [dm6]	C	G	4.274e^-4	0.924	NON_SYNONYMOUS_CODING Mur2B	TF binding site mE1_TFBS_chinmo
3R	14175470	3R_14175470_SNP [dm3] 3R_18349748_SNP [dm6]	C	T	4.277e^-4	0.924	INTRON CG15803
2R	14281092	2R_14281092_SNP [dm3] 2R_18393587_SNP [dm6]	A	C	4.278e^-4	0.924	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16931214	3R_16931214_SNP [dm3] 3R_21105492_SNP [dm6]	A	T	4.280e^-4	0.924	SYNONYMOUS_CODING Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad
2L	12298409	2L_12298409_SNP [dm3] 2L_12298409_SNP [dm6]	A	T	4.284e^-4	0.924	INTRON aret	TF binding site mE1_TFBS_inv
2L	13821617	2L_13821617_SNP [dm3] 2L_13821617_SNP [dm6]	C	A	4.285e^-4	0.924	SYNONYMOUS_CODING b	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18155854	3L_18155854_SNP [dm3] 3L_18162754_SNP [dm6]	C	A	4.288e^-4	0.924	UPSTREAM CG13699 INTERGENIC
X	9332902	X_9332902_SNP [dm3] X_9438869_SNP [dm6]	G	A	4.303e^-4	0.924	INTRON mgl
X	19597283	X_19597283_SNP [dm3] X_19703250_SNP [dm6]	G	T	4.315e^-4	0.924	UPSTREAM CG14230 INTRON CG14232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12042466	3L_12042466_SNP [dm3] 3L_12049366_SNP [dm6]	C	A	4.317e^-4	0.924	INTRON rols
2L	3989087	2L_3989087_SNP [dm3] 2L_3989087_SNP [dm6]	T	A	4.317e^-4	0.924	INTRON fred	TF binding site mE1_TFBS_bab1
2R	6244426	2R_6244426_SNP [dm3] 2R_10356921_SNP [dm6]	A	T	4.320e^-4	0.924	UPSTREAM CG42733 INTRON CG42732
2L	11952239	2L_11952239_SNP [dm3] 2L_11952239_SNP [dm6]	T	A	4.322e^-4	0.924	EXON CR43314
X	12280330	X_12280330_SNP [dm3] X_12386297_SNP [dm6]	T	C	4.323e^-4	0.924	INTERGENIC
2R	9787788	2R_9787788_SNP [dm3] 2R_13900283_SNP [dm6]	A	T	4.324e^-4	0.924	INTRON shot
2R	14128920	2R_14128920_SNP [dm3] 2R_18241415_SNP [dm6]	G	A	4.326e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4925149	2L_4925149_SNP [dm3] 2L_4925149_SNP [dm6]	A	C	4.331e^-4	0.924	INTRON hoe1
3L	1333797	3L_1333797_SNP [dm3] 3L_1333797_SNP [dm6]	C	A	4.333e^-4	0.924	SYNONYMOUS_CODING CG2211 UPSTREAM msd5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18391868	X_18391868_DEL [dm3] X_18497835_DEL [dm6]	TG	T	4.344e^-4	0.924	INTRON GalNAc-T2
3L	9756547	3L_9756547_SNP [dm3] 3L_9763447_SNP [dm6]	C	T	4.347e^-4	0.924	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8857333	3R_8857333_INS [dm3] 3R_13031611_INS [dm6]	G	GGAGTTTGCTTG...	4.361e^-4	0.924	UPSTREAM CG12360 & 1 other DOWNSTREAM l_3_87Df INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	20576297	3R_20576297_SNP [dm3] 3R_24750575_SNP [dm6]	A	G	4.364e^-4	0.924	SYNONYMOUS_CODING tld	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3R	9531077	3R_9531077_SNP [dm3] 3R_13705355_SNP [dm6]	C	G	4.365e^-4	0.924	UTR_5_PRIME Adgf-D
3L	12052719	3L_12052719_SNP [dm3] 3L_12059619_SNP [dm6]	C	T	4.377e^-4	0.924	INTRON rols	TF binding site mE1_TFBS_cad
X	9681326	X_9681326_SNP [dm3] X_9787293_SNP [dm6]	G	A	4.377e^-4	0.924	INTRON CG32698
2L	14585794	2L_14585794_SNP [dm3] 2L_14585794_SNP [dm6]	T	G	4.398e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	18145367	2L_18145367_SNP [dm3] 2L_18145367_SNP [dm6]	A	G	4.399e^-4	0.924	INTRON Socs36E EXON CR44478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	20781271	3L_20781271_SNP [dm3] 3L_20788171_SNP [dm6]	A	G	4.406e^-4	0.924	UPSTREAM CG11396 DOWNSTREAM Six4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9802524	2R_9802524_SNP [dm3] 2R_13915019_SNP [dm6]	G	T	4.407e^-4	0.924	INTRON shot
3R	26183355	3R_26183355_SNP [dm3] 3R_30357633_SNP [dm6]	C	T	4.409e^-4	0.924	UPSTREAM hdc INTRON hdc	TF binding site mE1_TFBS_chinmo
3R	8514350	3R_8514350_INS [dm3] 3R_12688628_INS [dm6]	A	AG	4.412e^-4	0.924	INTRON kar
2R	12708490	2R_12708490_SNP [dm3] 2R_16820985_SNP [dm6]	G	A	4.421e^-4	0.924	INTERGENIC
2L	12257057	2L_12257057_SNP [dm3] 2L_12257057_SNP [dm6]	C	A	4.426e^-4	0.924	INTRON aret
X	17907707	X_17907707_SNP [dm3] X_18013674_SNP [dm6]	C	T	4.429e^-4	0.924	INTRON Sh
X	1449241	X_1449241_SNP [dm3] X_1555208_SNP [dm6]	T	C	4.431e^-4	0.924	NON_SYNONYMOUS_CODING Mur2B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13914810	3R_13914810_SNP [dm3] 3R_18089088_SNP [dm6]	T	G	4.433e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3L	14275976	3L_14275976_SNP [dm3] 3L_14282876_SNP [dm6]	C	G	4.442e^-4	0.924	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22006411	3R_22006411_SNP [dm3] 3R_26180689_SNP [dm6]	T	C	4.445e^-4	0.924	INTRON CG31323
2L	11307489	2L_11307489_DEL [dm3] 2L_11307489_DEL [dm6]	ATGTGGTGA	A	4.446e^-4	0.924	UPSTREAM CR43721 INTERGENIC
3L	3718185	3L_3718185_SNP [dm3] 3L_3718185_SNP [dm6]	A	G	4.447e^-4	0.924	INTRON CG32264
3R	8721060	3R_8721060_SNP [dm3] 3R_12895338_SNP [dm6]	T	A	4.457e^-4	0.924	UPSTREAM CR33929 INTERGENIC
X	4320410	X_4320410_SNP [dm3] X_4426377_SNP [dm6]	A	T	4.459e^-4	0.924	UPSTREAM bi INTRON CR32773 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	4103707	3L_4103707_SNP [dm3] 3L_4103707_SNP [dm6]	G	A	4.461e^-4	0.924	UTR_5_PRIME Fit1 UPSTREAM CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8525705	3R_8525705_SNP [dm3] 3R_12699983_SNP [dm6]	A	C	4.471e^-4	0.924	INTRON Past1
2L	18551427	2L_18551427_SNP [dm3] 2L_18551427_SNP [dm6]	C	T	4.471e^-4	0.924	INTRON Pde11
2R	14128839	2R_14128839_SNP [dm3] 2R_18241334_SNP [dm6]	G	T	4.474e^-4	0.924	INTERGENIC
2L	4340967	2L_4340967_SNP [dm3] 2L_4340967_SNP [dm6]	G	A	4.477e^-4	0.924	INTRON Atet
3L	9295553	3L_9295553_SNP [dm3] 3L_9302453_SNP [dm6]	A	T	4.478e^-4	0.924	INTERGENIC
2L	16439833	2L_16439833_SNP [dm3] 2L_16439833_SNP [dm6]	G	A	4.485e^-4	0.924	INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	7319511	2L_7319511_SNP [dm3] 2L_7319511_SNP [dm6]	G	T	4.485e^-4	0.924	INTERGENIC
2R	6676113	2R_6676113_SNP [dm3] 2R_10788608_SNP [dm6]	A	T	4.486e^-4	0.924	INTRON CG33144
X	1435180	X_1435180_SNP [dm3] X_1541147_SNP [dm6]	G	T	4.500e^-4	0.924	INTRON Mur2B
3R	17702738	3R_17702738_SNP [dm3] 3R_21877016_SNP [dm6]	C	T	4.516e^-4	0.924	SYNONYMOUS_CODING CG6656 UPSTREAM P5CDh2 DOWNSTREAM CG34148	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9933035	2L_9933035_SNP [dm3] 2L_9933035_SNP [dm6]	T	G	4.527e^-4	0.924	INTRON Cpr30F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11457631	2R_11457631_SNP [dm3] 2R_15570126_SNP [dm6]	C	T	4.538e^-4	0.924	UTR_3_PRIME Cdk5 UPSTREAM Flo1 INTRON CG30466	TF binding site BDTNP1_TFBS_dl
3R	14172690	3R_14172690_SNP [dm3] 3R_18346968_SNP [dm6]	G	T	4.538e^-4	0.924	INTRON CG15803
3R	14971704	3R_14971704_SNP [dm3] 3R_19145982_SNP [dm6]	T	A	4.541e^-4	0.924	INTRON Ppcs
2R	10831865	2R_10831865_SNP [dm3] 2R_14944360_SNP [dm6]	A	C	4.543e^-4	0.924	UTR_3_PRIME CG10257 DOWNSTREAM aPKC
3R	15418326	3R_15418326_SNP [dm3] 3R_19592604_SNP [dm6]	G	A	4.545e^-4	0.924	SYNONYMOUS_CODING Dys
2L	14585807	2L_14585807_SNP [dm3] 2L_14585807_SNP [dm6]	A	C	4.547e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14587077	2L_14587077_SNP [dm3] 2L_14587077_SNP [dm6]	T	G	4.552e^-4	0.924	DOWNSTREAM CG42680 INTERGENIC	TF binding site mE1_TFBS_cad
X	16844265	X_16844265_SNP [dm3] X_16950232_SNP [dm6]	C	A	4.553e^-4	0.924	INTRON RhoGAP15B
2R	10631972	2R_10631972_DEL [dm3] 2R_14744467_DEL [dm6]	GT	C	4.553e^-4	0.924	INTRON CG12858
3R	17692194	3R_17692194_SNP [dm3] 3R_21866472_SNP [dm6]	A	T	4.562e^-4	0.924	DOWNSTREAM CG6569 & 1 other INTRON CG6569
3L	9621566	3L_9621566_SNP [dm3] 3L_9628466_SNP [dm6]	G	A	4.575e^-4	0.924	SYNONYMOUS_CODING Or67b UPSTREAM CG8336
2R	13842774	2R_13842774_SNP [dm3] 2R_17955269_SNP [dm6]	T	A	4.594e^-4	0.924	DOWNSTREAM PpY-55A EXON CR44418
3L	1879645	3L_1879645_SNP [dm3] 3L_1879645_SNP [dm6]	T	C	4.597e^-4	0.924	INTRON CG13937
2L	11145633	2L_11145633_SNP [dm3] 2L_11145633_SNP [dm6]	G	A	4.599e^-4	0.924	UPSTREAM CG31867 INTRON Gyc32E
3L	18150072	3L_18150072_SNP [dm3] 3L_18156972_SNP [dm6]	A	G	4.604e^-4	0.924	SYNONYMOUS_CODING CG13699
X	489156	X_489156_SNP [dm3] X_595123_SNP [dm6]	T	G	4.606e^-4	0.924	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10204536	3R_10204536_SNP [dm3] 3R_14378814_SNP [dm6]	C	T	4.609e^-4	0.924	INTERGENIC
2L	4700166	2L_4700166_SNP [dm3] 2L_4700166_SNP [dm6]	C	G	4.619e^-4	0.924	DOWNSTREAM Taf12L INTRON CG34351
2R	17358536	2R_17358536_INS [dm3] 2R_21471031_INS [dm6]	T	TTAT	4.621e^-4	0.924	INTRON Sdc
3L	9741068	3L_9741068_SNP [dm3] 3L_9747968_SNP [dm6]	A	G	4.623e^-4	0.924	SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18437906	X_18437906_SNP [dm3] X_18543873_SNP [dm6]	T	A	4.637e^-4	0.924	INTRON Bx
3L	2673340	3L_2673340_SNP [dm3] 3L_2673340_SNP [dm6]	A	G	4.639e^-4	0.924	INTRON Fife
2L	4232617	2L_4232617_SNP [dm3] 2L_4232617_SNP [dm6]	G	A	4.639e^-4	0.924	INTERGENIC
2R	10086907	2R_10086907_SNP [dm3] 2R_14199402_SNP [dm6]	C	T	4.641e^-4	0.924	SYNONYMOUS_CODING VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16311841	2L_16311841_SNP [dm3] 2L_16311841_SNP [dm6]	A	G	4.647e^-4	0.924	INTRON fzy	TF binding site mE1_TFBS_sens
X	12452679	X_12452679_SNP [dm3] X_12558646_SNP [dm6]	C	G	4.648e^-4	0.924	INTRON CG43921
2R	14888318	2R_14888318_SNP [dm3] 2R_19000813_SNP [dm6]	C	T	4.648e^-4	0.924	INTRON tn
3L	1338742	3L_1338742_SNP [dm3] 3L_1338742_SNP [dm6]	T	C	4.650e^-4	0.924	NON_SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo
3R	23393893	3R_23393893_SNP [dm3] 3R_27568171_SNP [dm6]	G	A	4.652e^-4	0.924	UTR_5_PRIME wdb	TF binding site mE1_TFBS_HSA
X	1876802	X_1876802_SNP [dm3] X_1982769_SNP [dm6]	C	A	4.669e^-4	0.924	INTRON Hr4
3L	9295589	3L_9295589_DEL [dm3] 3L_9302489_DEL [dm6]	AAGCATACATA...	A	4.670e^-4	0.924	INTERGENIC
3L	9295608	3L_9295608_SNP [dm3] 3L_9302508_SNP [dm6]	A	T	4.670e^-4	0.924	INTERGENIC
2L	14581715	2L_14581715_SNP [dm3] 2L_14581715_SNP [dm6]	A	C	4.684e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12950102	2L_12950102_SNP [dm3] 2L_12950102_SNP [dm6]	T	A	4.692e^-4	0.924	INTERGENIC
3L	2673334	3L_2673334_SNP [dm3] 3L_2673334_SNP [dm6]	A	T	4.695e^-4	0.924	INTRON Fife
2L	8662768	2L_8662768_SNP [dm3] 2L_8662768_SNP [dm6]	C	T	4.698e^-4	0.924	INTRON Sema-1a
4	282620	4_282620_SNP [dm3] 4_261994_SNP [dm6]	A	G	4.710e^-4	0.924	SYNONYMOUS_CODING RhoGAP102A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6060844	3L_6060844_SNP [dm3] 3L_6067744_SNP [dm6]	A	G	4.713e^-4	0.924	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8857326	3R_8857326_SNP [dm3] 3R_13031604_SNP [dm6]	T	A	4.736e^-4	0.924	UPSTREAM CG12360 & 1 other DOWNSTREAM l_3_87Df INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	1879637	3L_1879637_SNP [dm3] 3L_1879637_SNP [dm6]	C	G	4.742e^-4	0.924	INTRON CG13937
X	12452675	X_12452675_SNP [dm3] X_12558642_SNP [dm6]	T	C	4.743e^-4	0.924	INTRON CG43921
3L	1879643	3L_1879643_SNP [dm3] 3L_1879643_SNP [dm6]	C	T	4.746e^-4	0.924	INTRON CG13937
X	10494899	X_10494899_SNP [dm3] X_10600866_SNP [dm6]	A	G	4.750e^-4	0.924	INTRON CG1628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	16931205	3R_16931205_SNP [dm3] 3R_21105483_SNP [dm6]	A	G	4.766e^-4	0.924	SYNONYMOUS_CODING Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad
3L	17714876	3L_17714876_SNP [dm3] 3L_17721776_SNP [dm6]	C	T	4.773e^-4	0.924	INTRON Ccn
2R	13267975	2R_13267975_INS [dm3] 2R_17380470_INS [dm6]	A	ATCA	4.780e^-4	0.924	INTERGENIC
2L	9154964	2L_9154964_SNP [dm3] 2L_9154964_SNP [dm6]	A	C	4.796e^-4	0.924	INTRON CG32982
2R	11220242	2R_11220242_SNP [dm3] 2R_15332737_SNP [dm6]	G	C	4.812e^-4	0.924	INTRON Hr51
3L	9295583	3L_9295583_SNP [dm3] 3L_9302483_SNP [dm6]	A	G	4.813e^-4	0.924	INTERGENIC
2R	5109689	2R_5109689_INS [dm3] 2R_9222184_INS [dm6]	A	ACATA	4.814e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9577377	2R_9577377_SNP [dm3] 2R_13689872_SNP [dm6]	T	G	4.820e^-4	0.924	INTRON fas
3L	7923595	3L_7923595_SNP [dm3] 3L_7930495_SNP [dm6]	C	T	4.826e^-4	0.924	SYNONYMOUS_CODING syd
3L	1334569	3L_1334569_SNP [dm3] 3L_1334569_SNP [dm6]	A	C	4.827e^-4	0.924	UTR_5_PRIME CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26268292	3R_26268292_SNP [dm3] 3R_30442570_SNP [dm6]	C	T	4.829e^-4	0.924	INTRON CG15537
2R	7679970	2R_7679970_SNP [dm3] 2R_11792465_SNP [dm6]	T	C	4.831e^-4	0.924	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4705939	2L_4705939_SNP [dm3] 2L_4705939_SNP [dm6]	A	G	4.832e^-4	0.924	INTRON CG34351
2R	16584128	2R_16584128_SNP [dm3] 2R_20696623_SNP [dm6]	G	T	4.848e^-4	0.924	INTERGENIC
3L	9211401	3L_9211401_SNP [dm3] 3L_9218301_SNP [dm6]	T	G	4.858e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4222491	2L_4222491_SNP [dm3] 2L_4222491_SNP [dm6]	G	T	4.870e^-4	0.924	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	4229430	2L_4229430_DEL [dm3] 2L_4229430_DEL [dm6]	GT	G	4.870e^-4	0.924	DOWNSTREAM RpL40 EXON CR44608
2R	13597064	2R_13597064_SNP [dm3] 2R_17709559_SNP [dm6]	T	A	4.876e^-4	0.924	UPSTREAM CG6424 INTRON CG6424
3L	10881220	3L_10881220_SNP [dm3] 3L_10888120_SNP [dm6]	C	A	4.881e^-4	0.924	INTERGENIC
3R	4086478	3R_4086478_SNP [dm3] 3R_8260756_SNP [dm6]	A	G	4.881e^-4	0.924	DOWNSTREAM mtg EXON CR18228
2L	9412649	2L_9412649_SNP [dm3] 2L_9412649_SNP [dm6]	G	A	4.882e^-4	0.924	INTRON Shawl
2L	21248694	2L_21248694_SNP [dm3] 2L_21248694_SNP [dm6]	C	G	4.885e^-4	0.924	INTRON Hr39	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10873031	2R_10873031_SNP [dm3] 2R_14985526_SNP [dm6]	T	A	4.886e^-4	0.924	INTRON pcs	TF binding site mE1_TFBS_cad
2R	14062314	2R_14062314_SNP [dm3] 2R_18174809_SNP [dm6]	G	A	4.908e^-4	0.924	UTR_3_PRIME CG10916 DOWNSTREAM CG5726 & 1 other
2L	14972528	2L_14972528_SNP [dm3] 2L_14972528_SNP [dm6]	T	C	4.913e^-4	0.924	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	10653255	3L_10653255_SNP [dm3] 3L_10660155_SNP [dm6]	C	G	4.922e^-4	0.924	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8216397	2L_8216397_SNP [dm3] 2L_8216397_SNP [dm6]	C	T	4.931e^-4	0.924	DOWNSTREAM CG8292 INTRON CG8349
X	6451852	X_6451852_SNP [dm3] X_6557819_SNP [dm6]	G	C	4.944e^-4	0.924	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
X	15181889	X_15181889_SNP [dm3] X_15287856_SNP [dm6]	C	T	4.956e^-4	0.924	INTERGENIC
2L	7357681	2L_7357681_SNP [dm3] 2L_7357681_SNP [dm6]	C	A	4.973e^-4	0.924	INTERGENIC
3R	4669408	3R_4669408_SNP [dm3] 3R_8843686_SNP [dm6]	G	T	4.988e^-4	0.924	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6082094	2L_6082094_INS [dm3] 2L_6082094_INS [dm6]	T	TAAT	4.991e^-4	0.924	UPSTREAM Kr-h1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	531380	4_531380_SNP [dm3] 4_510754_SNP [dm6]	T	C	4.994e^-4	0.924	INTRON zfh2	TF binding site BDTNP1_TFBS_twi
2R	15172994	2R_15172994_SNP [dm3] 2R_19285489_SNP [dm6]	T	C	4.996e^-4	0.924	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3L	7511379	3L_7511379_SNP [dm3] 3L_7518279_SNP [dm6]	T	C	4.996e^-4	0.924	UPSTREAM ltl DOWNSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9215251	X_9215251_SNP [dm3] X_9321218_SNP [dm6]	C	G	4.997e^-4	0.924	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
3R	8604713	3R_8604713_SNP [dm3] 3R_12778991_SNP [dm6]	C	A	5.001e^-4	0.924	INTRON beat-Vc
3R	15445317	3R_15445317_SNP [dm3] 3R_19619595_SNP [dm6]	A	C	5.005e^-4	0.924	INTRON CG6231
2L	7706346	2L_7706346_SNP [dm3] 2L_7706346_SNP [dm6]	G	A	5.016e^-4	0.924	SYNONYMOUS_CODING Tep3	TF binding site mE1_TFBS_inv
3R	9277145	3R_9277145_SNP [dm3] 3R_13451423_SNP [dm6]	A	G	5.016e^-4	0.924	INTRON CG14372
2L	11066067	2L_11066067_SNP [dm3] 2L_11066067_SNP [dm6]	G	T	5.017e^-4	0.924	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2672686	3L_2672686_SNP [dm3] 3L_2672686_SNP [dm6]	G	C	5.018e^-4	0.924	UTR_3_PRIME Fife INTRON Fife
2R	17927406	2R_17927406_SNP [dm3] 2R_22039901_SNP [dm6]	A	T	5.019e^-4	0.924	UPSTREAM CG34370 INTERGENIC
2R	13245912	2R_13245912_SNP [dm3] 2R_17358407_SNP [dm6]	A	G	5.034e^-4	0.924	INTRON mbl
3R	4882801	3R_4882801_SNP [dm3] 3R_9057079_SNP [dm6]	C	G	5.035e^-4	0.924	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	12708429	2R_12708429_SNP [dm3] 2R_16820924_SNP [dm6]	T	C	5.036e^-4	0.924	INTERGENIC
3L	10965439	3L_10965439_SNP [dm3] 3L_10972339_SNP [dm6]	C	T	5.040e^-4	0.924	UPSTREAM CG14147 INTERGENIC
3L	9966986	3L_9966986_SNP [dm3] 3L_9973886_SNP [dm6]	T	C	5.054e^-4	0.924	UTR_3_PRIME CG42455 & 1 other UPSTREAM dpr6
3L	7960007	3L_7960007_SNP [dm3] 3L_7966907_SNP [dm6]	A	G	5.057e^-4	0.924	INTERGENIC
3L	8378466	3L_8378466_SNP [dm3] 3L_8385366_SNP [dm6]	T	C	5.059e^-4	0.924	INTRON ImpE1
3R	8713645	3R_8713645_SNP [dm3] 3R_12887923_SNP [dm6]	A	G	5.069e^-4	0.924	INTERGENIC
3L	15641433	3L_15641433_SNP [dm3] 3L_15648333_SNP [dm6]	C	T	5.070e^-4	0.924	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
2L	5753589	2L_5753589_SNP [dm3] 2L_5753589_SNP [dm6]	C	A	5.072e^-4	0.924	INTRON CG11030
3L	17756781	3L_17756781_INS [dm3] 3L_17763681_INS [dm6]	G	GA	5.076e^-4	0.924	DOWNSTREAM CG32181 INTRON Adgf-A & 1 other	TF binding site mE1_TFBS_Trl
2L	14585709	2L_14585709_SNP [dm3] 2L_14585709_SNP [dm6]	T	A	5.078e^-4	0.924	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	439091	3L_439091_SNP [dm3] 3L_439091_SNP [dm6]	T	G	5.084e^-4	0.924	INTRON klar

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.328e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.020511
In_3R_Mo	0.003486

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	8.3466	0.0154
In_3R_Mo	9.7674	0.0076

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1584 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	22130399	3R_22130399_SNP [dm3] 3R_26304677_SNP [dm6]	T	C	2.767e^-8	0.052	INTERGENIC
2L	1504286	2L_1504286_SNP [dm3] 2L_1504286_SNP [dm6]	A	C	3.045e^-6	1	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	638419	2L_638419_SNP [dm3] 2L_638419_SNP [dm6]	G	C	4.237e^-6	1	INTERGENIC
3L	15597931	3L_15597931_SNP [dm3] 3L_15604831_SNP [dm6]	G	A	4.382e^-6	1	SPLICE_SITE_REGION RhoGAP71E INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19645996	2L_19645996_SNP [dm3] 2L_19645996_SNP [dm6]	C	G	4.753e^-6	1	INTRON Lar
3L	12731523	3L_12731523_SNP [dm3] 3L_12738423_SNP [dm6]	G	T	5.434e^-6	1	INTRON Ptp69D
2L	5755335	2L_5755335_SNP [dm3] 2L_5755335_SNP [dm6]	C	A	5.464e^-6	1	INTRON CG11030
X	2385953	X_2385953_SNP [dm3] X_2491920_SNP [dm6]	A	C	5.788e^-6	1	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	5567290	2L_5567290_SNP [dm3] 2L_5567290_SNP [dm6]	G	T	6.957e^-6	1	INTERGENIC
2L	5567291	2L_5567291_SNP [dm3] 2L_5567291_SNP [dm6]	G	A	6.957e^-6	1	INTERGENIC
2L	1504278	2L_1504278_SNP [dm3] 2L_1504278_SNP [dm6]	A	T	6.961e^-6	1	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12736607	2R_12736607_SNP [dm3] 2R_16849102_SNP [dm6]	T	G	7.785e^-6	1	EXON CR44467	TF binding site mE1_TFBS_kn
3L	6993862	3L_6993862_SNP [dm3] 3L_7000762_SNP [dm6]	A	T	8.497e^-6	1	INTRON Mp
2R	15688872	2R_15688872_SNP [dm3] 2R_19801367_SNP [dm6]	A	T	8.847e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1504364	2L_1504364_SNP [dm3] 2L_1504364_SNP [dm6]	G	A	9.005e^-6	1	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14128882	2R_14128882_SNP [dm3] 2R_18241377_SNP [dm6]	T	C	1.003e^-5	1	INTERGENIC
2L	2314243	2L_2314243_SNP [dm3] 2L_2314243_SNP [dm6]	A	G	1.117e^-5	1	INTRON CG9967 & 1 other
3L	12731519	3L_12731519_SNP [dm3] 3L_12738419_SNP [dm6]	T	A	1.203e^-5	1	INTRON Ptp69D
3R	21924770	3R_21924770_SNP [dm3] 3R_26099048_SNP [dm6]	C	T	1.208e^-5	1	UPSTREAM dys INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4212985	3L_4212985_SNP [dm3] 3L_4212985_SNP [dm6]	C	T	1.375e^-5	1	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2399024	X_2399024_DEL [dm3] X_2504991_DEL [dm6]	GCTAGAAT	G	1.421e^-5	1	INTRON trol	TF binding site mE1_TFBS_cad
3L	15634348	3L_15634348_SNP [dm3] 3L_15641248_SNP [dm6]	A	T	1.634e^-5	1	INTRON comm3
2R	4655964	2R_4655964_SNP [dm3] 2R_8768459_SNP [dm6]	G	A	1.646e^-5	1	EXON CR44278
3L	15634288	3L_15634288_SNP [dm3] 3L_15641188_SNP [dm6]	C	G	1.710e^-5	1	INTRON comm3
2R	14128922	2R_14128922_SNP [dm3] 2R_18241417_SNP [dm6]	C	A	1.805e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21277849	X_21277849_DEL [dm3] X_21406822_DEL [dm6]	CC	C	1.820e^-5	1	INTERGENIC
2L	2314235	2L_2314235_SNP [dm3] 2L_2314235_SNP [dm6]	G	A	1.889e^-5	1	INTRON CG9967 & 1 other
2R	7192795	2R_7192795_SNP [dm3] 2R_11305290_SNP [dm6]	C	T	1.925e^-5	1	SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
2R	17476800	2R_17476800_SNP [dm3] 2R_21589295_SNP [dm6]	T	A	2.010e^-5	1	UPSTREAM CG33225 INTERGENIC
3R	24407899	3R_24407899_SNP [dm3] 3R_28582177_SNP [dm6]	C	G	2.042e^-5	1	UTR_3_PRIME fkh	regulatory region REDfly_CRMs
3R	26251135	3R_26251135_SNP [dm3] 3R_30425413_SNP [dm6]	T	A	2.128e^-5	1	UPSTREAM CG15536 DOWNSTREAM CG2218 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2626419	2L_2626419_SNP [dm3] 2L_2626419_SNP [dm6]	C	T	2.338e^-5	1	EXON CR45705
X	21274183	X_21274183_SNP [dm3] X_21403156_SNP [dm6]	A	C	2.451e^-5	1	UPSTREAM CG1678 INTERGENIC
2R	10556721	2R_10556721_DEL [dm3] 2R_14669216_DEL [dm6]	GAG	G	2.476e^-5	1	INTRON CG12866	TF binding site BDTNP1_TFBS_hb
3L	10741808	3L_10741808_SNP [dm3] 3L_10748708_SNP [dm6]	A	T	2.506e^-5	1	INTERGENIC
X	10821413	X_10821413_SNP [dm3] X_10927380_SNP [dm6]	T	A	2.526e^-5	1	UPSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	22130420	3R_22130420_SNP [dm3] 3R_26304698_SNP [dm6]	T	A	2.592e^-5	1	INTERGENIC
X	2399022	X_2399022_SNP [dm3] X_2504989_SNP [dm6]	T	A	2.606e^-5	1	INTRON trol	TF binding site mE1_TFBS_cad
2R	18291047	2R_18291047_SNP [dm3] 2R_22403542_SNP [dm6]	G	T	2.628e^-5	1	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23972666	3R_23972666_SNP [dm3] 3R_28146944_SNP [dm6]	G	T	2.646e^-5	1	START_GAINED CG34354 UTR_5_PRIME CG34354 INTRON CG34354
3R	25630120	3R_25630120_INS [dm3] 3R_29804398_INS [dm6]	T	TTCTTGCATTCT...	2.672e^-5	1	UTR_3_PRIME ncd DOWNSTREAM CG7789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22065111	X_22065111_SNP [dm3] X_22663275_SNP [dm6]	T	A	2.779e^-5	1	INTRON CR44997
2R	14128863	2R_14128863_SNP [dm3] 2R_18241358_SNP [dm6]	A	C	2.879e^-5	1	INTERGENIC
3R	25627938	3R_25627938_SNP [dm3] 3R_29802216_SNP [dm6]	A	G	2.910e^-5	1	SYNONYMOUS_CODING CG7834 UPSTREAM CG7789 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	18152045	3L_18152045_SNP [dm3] 3L_18158945_SNP [dm6]	G	A	3.005e^-5	1	SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6329909	X_6329909_SNP [dm3] X_6435876_SNP [dm6]	A	G	3.062e^-5	1	INTRON CG42340	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10623390	2L_10623390_SNP [dm3] 2L_10623390_SNP [dm6]	A	G	3.229e^-5	1	INTRON Trim9
2L	2758518	2L_2758518_SNP [dm3] 2L_2758518_SNP [dm6]	A	T	3.350e^-5	1	UTR_3_PRIME CG9960 & 1 other UPSTREAM CR44772 DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	7472684	2R_7472684_SNP [dm3] 2R_11585179_SNP [dm6]	A	G	3.418e^-5	1	NON_SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19359921	3L_19359921_SNP [dm3] 3L_19366821_SNP [dm6]	T	A	3.472e^-5	1	INTRON CG32206
2L	20828038	2L_20828038_SNP [dm3] 2L_20828038_SNP [dm6]	C	G	3.535e^-5	1	DOWNSTREAM CG9331 INTERGENIC
2R	14128930	2R_14128930_SNP [dm3] 2R_18241425_SNP [dm6]	T	G	3.690e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13605462	3R_13605462_SNP [dm3] 3R_17779740_SNP [dm6]	G	A	3.767e^-5	1	SYNONYMOUS_CODING CG43102	TF binding site mE1_TFBS_chinmo
X	18195900	X_18195900_DEL [dm3] X_18301867_DEL [dm6]	TT	T	3.840e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1619348	2L_1619348_SNP [dm3] 2L_1619348_SNP [dm6]	C	A	3.892e^-5	1	DOWNSTREAM CR44603 EXON CR44603
X	7771749	X_7771749_SNP [dm3] X_7877716_SNP [dm6]	A	G	3.970e^-5	1	SYNONYMOUS_CODING Ir7d DOWNSTREAM Ir7c
3L	18687819	3L_18687819_SNP [dm3] 3L_18694719_SNP [dm6]	C	A	4.004e^-5	1	UPSTREAM CR43987 INTRON CG6893
X	21278102	X_21278102_SNP [dm3] X_21407075_SNP [dm6]	G	A	4.102e^-5	1	INTERGENIC
3R	24407389	3R_24407389_SNP [dm3] 3R_28581667_SNP [dm6]	G	T	4.189e^-5	1	UTR_3_PRIME fkh DOWNSTREAM fkh	regulatory region REDfly_CRMs
X	6004974	X_6004974_DEL [dm3] X_6110941_DEL [dm6]	AAA	A	4.245e^-5	1	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
2L	2461883	2L_2461883_SNP [dm3] 2L_2461883_SNP [dm6]	C	A	4.303e^-5	1	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4001563	X_4001563_SNP [dm3] X_4107530_SNP [dm6]	A	T	4.618e^-5	1	INTRON cib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10646062	2R_10646062_SNP [dm3] 2R_14758557_SNP [dm6]	A	C	4.642e^-5	1	NON_SYNONYMOUS_CODING CG12857 SYNONYMOUS_CODING CG12857 UPSTREAM Trs31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8667090	3L_8667090_SNP [dm3] 3L_8673990_SNP [dm6]	A	T	4.865e^-5	1	INTERGENIC	regulatory region REDfly_CRMs
2R	6374920	2R_6374920_SNP [dm3] 2R_10487415_SNP [dm6]	A	G	4.945e^-5	1	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1504820	2L_1504820_SNP [dm3] 2L_1504820_SNP [dm6]	T	C	5.117e^-5	1	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4530844	3R_4530844_SNP [dm3] 3R_8705122_SNP [dm6]	T	A	5.132e^-5	1	INTERGENIC	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7192332	2R_7192332_SNP [dm3] 2R_11304827_SNP [dm6]	T	G	5.169e^-5	1	SYNONYMOUS_CODING CG7741 DOWNSTREAM Fpps	TF binding site mE1_TFBS_sens
2R	6557585	2R_6557585_SNP [dm3] 2R_10670080_SNP [dm6]	G	T	5.216e^-5	1	INTERGENIC
X	11131799	X_11131799_SNP [dm3] X_11237766_SNP [dm6]	T	A	5.232e^-5	1	INTRON CG44422
2R	10088230	2R_10088230_SNP [dm3] 2R_14200725_SNP [dm6]	T	G	5.232e^-5	1	UTR_5_PRIME VGAT DOWNSTREAM Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17908516	X_17908516_SNP [dm3] X_18014483_SNP [dm6]	G	A	5.234e^-5	1	SPLICE_SITE_REGION Sh UTR_5_PRIME Sh INTRON Sh
2R	18650348	2R_18650348_SNP [dm3] 2R_22762843_SNP [dm6]	A	G	5.337e^-5	1	UPSTREAM CG13527 INTRON CG42260
2R	4695921	2R_4695921_SNP [dm3] 2R_8808416_SNP [dm6]	C	T	5.338e^-5	1	INTRON sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14152068	X_14152068_SNP [dm3] X_14258035_SNP [dm6]	C	T	5.431e^-5	1	SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5217645	X_5217645_SNP [dm3] X_5323612_SNP [dm6]	G	A	5.475e^-5	1	UPSTREAM Rnp4F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10741742	3L_10741742_SNP [dm3] 3L_10748642_SNP [dm6]	C	A	5.489e^-5	1	INTERGENIC
3R	10529025	3R_10529025_SNP [dm3] 3R_14703303_SNP [dm6]	C	T	5.586e^-5	1	INTRON kibra	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1618901	2L_1618901_SNP [dm3] 2L_1618901_SNP [dm6]	A	G	5.651e^-5	1	DOWNSTREAM CR44603 EXON CR44603	TF binding site mE1_TFBS_chinmo
2L	19574383	2L_19574383_SNP [dm3] 2L_19574383_SNP [dm6]	T	A	5.665e^-5	1	INTRON spi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14128920	2R_14128920_SNP [dm3] 2R_18241415_SNP [dm6]	G	A	5.771e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7469734	2R_7469734_SNP [dm3] 2R_11582229_SNP [dm6]	G	A	5.873e^-5	1	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	7772106	X_7772106_SNP [dm3] X_7878073_SNP [dm6]	A	T	6.066e^-5	1	SYNONYMOUS_CODING Ir7d
2R	7191296	2R_7191296_SNP [dm3] 2R_11303791_SNP [dm6]	T	C	6.108e^-5	1	UPSTREAM Obp47b INTRON CG7741	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	16925032	2R_16925032_SNP [dm3] 2R_21037527_SNP [dm6]	T	C	6.201e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17836767	2L_17836767_SNP [dm3] 2L_17836767_SNP [dm6]	T	C	6.204e^-5	1	INTRON CadN2
3R	20260745	3R_20260745_SNP [dm3] 3R_24435023_SNP [dm6]	A	T	6.254e^-5	1	INTRON nAChRalpha1
2L	20823093	2L_20823093_SNP [dm3] 2L_20823093_SNP [dm6]	T	A	6.254e^-5	1	UTR_5_PRIME CG9331 UPSTREAM CG9331	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10648472	2R_10648472_SNP [dm3] 2R_14760967_SNP [dm6]	T	C	6.258e^-5	1	UTR_3_PRIME Spred DOWNSTREAM Spred
2L	4187834	2L_4187834_SNP [dm3] 2L_4187834_SNP [dm6]	G	A	6.279e^-5	1	UPSTREAM lectin-24Db & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24410582	3R_24410582_SNP [dm3] 3R_28584860_SNP [dm6]	T	A	6.496e^-5	1	UTR_5_PRIME fkh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	23675282	3R_23675282_SNP [dm3] 3R_27849560_SNP [dm6]	G	A	6.577e^-5	1	INTRON CG34353
2R	17971040	2R_17971040_SNP [dm3] 2R_22083535_SNP [dm6]	C	G	6.626e^-5	1	SYNONYMOUS_CODING Synj
X	11555071	X_11555071_SNP [dm3] X_11661038_SNP [dm6]	A	T	6.701e^-5	1	INTRON Ptp10D
3R	21928771	3R_21928771_SNP [dm3] 3R_26103049_SNP [dm6]	A	T	6.732e^-5	1	INTERGENIC
3R	7419548	3R_7419548_SNP [dm3] 3R_11593826_SNP [dm6]	G	C	6.956e^-5	1	INTRON Jupiter
X	7767089	X_7767089_SNP [dm3] X_7873056_SNP [dm6]	T	A	7.057e^-5	1	NON_SYNONYMOUS_CODING dec-1 EXON CR43615	TF binding site mE1_TFBS_chinmo
2L	20827803	2L_20827803_DEL [dm3] 2L_20827803_DEL [dm6]	AAGAT	A	7.112e^-5	1	DOWNSTREAM CG9331 INTERGENIC
2R	17476803	2R_17476803_SNP [dm3] 2R_21589298_SNP [dm6]	G	A	7.224e^-5	1	UPSTREAM CG33225 INTERGENIC
2R	18009218	2R_18009218_SNP [dm3] 2R_22121713_SNP [dm6]	T	G	7.332e^-5	1	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10741595	3L_10741595_SNP [dm3] 3L_10748495_SNP [dm6]	C	T	7.591e^-5	1	INTERGENIC
2R	16925053	2R_16925053_SNP [dm3] 2R_21037548_SNP [dm6]	A	C	7.611e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14128903	2R_14128903_SNP [dm3] 2R_18241398_SNP [dm6]	T	C	7.659e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12097521	3L_12097521_DEL [dm3] 3L_12104421_DEL [dm6]	ATAAAATGGCCAATTGAAGG...	A	7.882e^-5	1	INTERGENIC
2R	16269598	2R_16269598_SNP [dm3] 2R_20382093_SNP [dm6]	A	T	7.898e^-5	1	INTERGENIC
2R	6557571	2R_6557571_SNP [dm3] 2R_10670066_SNP [dm6]	C	T	7.938e^-5	1	INTERGENIC
3L	17019791	3L_17019791_SNP [dm3] 3L_17026691_SNP [dm6]	T	C	7.979e^-5	1	SYNONYMOUS_CODING Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
2R	18834695	2R_18834695_SNP [dm3] 2R_22947172_SNP [dm6]	C	G	8.195e^-5	1	INTERGENIC
2R	10641771	2R_10641771_SNP [dm3] 2R_14754266_SNP [dm6]	C	G	8.226e^-5	1	NON_SYNONYMOUS_CODING CG10151 DOWNSTREAM ave	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11076852	2R_11076852_SNP [dm3] 2R_15189347_SNP [dm6]	T	G	8.459e^-5	1	UTR_3_PRIME igl
2L	20824694	2L_20824694_SNP [dm3] 2L_20824694_SNP [dm6]	A	G	8.621e^-5	1	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11409708	3L_11409708_SNP [dm3] 3L_11416608_SNP [dm6]	T	C	8.909e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23266450	3R_23266450_SNP [dm3] 3R_27440728_SNP [dm6]	G	C	8.990e^-5	1	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	9228688	X_9228688_SNP [dm3] X_9334655_SNP [dm6]	G	A	9.288e^-5	1	INTRON CG34449	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14128974	2R_14128974_INS [dm3] 2R_18241469_INS [dm6]	T	TCGCAGT	9.449e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16497696	3L_16497696_SNP [dm3] 3L_16504596_SNP [dm6]	T	C	9.689e^-5	1	INTRON CG43373
3R	4028664	3R_4028664_SNP [dm3] 3R_8202942_SNP [dm6]	C	T	9.718e^-5	1	DOWNSTREAM CR43303 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10741736	3L_10741736_SNP [dm3] 3L_10748636_SNP [dm6]	A	G	9.770e^-5	1	INTERGENIC
2R	18669885	2R_18669885_SNP [dm3] 2R_22782380_SNP [dm6]	C	G	9.844e^-5	1	INTRON CG42260
2R	3773289	2R_3773289_SNP [dm3] 2R_7885784_SNP [dm6]	G	C	9.873e^-5	1	UTR_5_PRIME Dgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4194539	2L_4194539_SNP [dm3] 2L_4194539_SNP [dm6]	T	C	9.988e^-5	1	INTRON CG3714
2L	20822064	2L_20822064_SNP [dm3] 2L_20822064_SNP [dm6]	T	C	1.004e^-4	1	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7975827	3L_7975827_SNP [dm3] 3L_7982727_SNP [dm6]	A	C	1.022e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14128839	2R_14128839_SNP [dm3] 2R_18241334_SNP [dm6]	G	T	1.027e^-4	1	INTERGENIC
2L	15792971	2L_15792971_SNP [dm3] 2L_15792971_SNP [dm6]	T	A	1.028e^-4	1	INTERGENIC
2L	19583254	2L_19583254_SNP [dm3] 2L_19583254_SNP [dm6]	A	G	1.032e^-4	1	SYNONYMOUS_CODING CG10262 UPSTREAM Hakai & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	19232637	X_19232637_SNP [dm3] X_19338604_SNP [dm6]	G	C	1.033e^-4	1	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20822036	2L_20822036_SNP [dm3] 2L_20822036_SNP [dm6]	T	C	1.034e^-4	1	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7469689	2R_7469689_SNP [dm3] 2R_11582184_SNP [dm6]	T	A	1.050e^-4	1	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	6109893	3L_6109893_SNP [dm3] 3L_6116793_SNP [dm6]	A	G	1.059e^-4	1	INTRON Ets65A
X	8063641	X_8063641_SNP [dm3] X_8169608_SNP [dm6]	T	G	1.059e^-4	1	NON_SYNONYMOUS_CODING CG2278 DOWNSTREAM slpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18025987	2R_18025987_SNP [dm3] 2R_22138482_SNP [dm6]	T	C	1.065e^-4	1	UPSTREAM CG11269 INTRON a
2R	14678255	2R_14678255_SNP [dm3] 2R_18790750_SNP [dm6]	A	G	1.069e^-4	1	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15273307	2R_15273307_SNP [dm3] 2R_19385802_SNP [dm6]	A	G	1.076e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	2642823	2L_2642823_SNP [dm3] 2L_2642823_SNP [dm6]	G	C	1.076e^-4	1	INTERGENIC
2L	870395	2L_870395_SNP [dm3] 2L_870395_SNP [dm6]	T	A	1.084e^-4	1	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14190363	2R_14190363_SNP [dm3] 2R_18302858_SNP [dm6]	T	C	1.091e^-4	1	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11090235	3L_11090235_SNP [dm3] 3L_11097135_SNP [dm6]	C	T	1.098e^-4	1	UPSTREAM CG6279 DOWNSTREAM CG6272 INTRON pncr011:3L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8667092	3L_8667092_SNP [dm3] 3L_8673992_SNP [dm6]	G	A	1.106e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	2229608	2L_2229608_SNP [dm3] 2L_2229608_SNP [dm6]	T	G	1.108e^-4	1	INTRON rti	TF binding site mE1_TFBS_HSA
3R	13430044	3R_13430044_SNP [dm3] 3R_17604322_SNP [dm6]	C	A	1.113e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	22065116	X_22065116_SNP [dm3] X_22663280_SNP [dm6]	C	T	1.117e^-4	1	INTRON CR44997
3L	16497697	3L_16497697_SNP [dm3] 3L_16504597_SNP [dm6]	C	T	1.117e^-4	1	INTRON CG43373
2R	18331770	2R_18331770_SNP [dm3] 2R_22444265_SNP [dm6]	T	C	1.121e^-4	1	INTERGENIC
2R	14128952	2R_14128952_SNP [dm3] 2R_18241447_SNP [dm6]	C	T	1.122e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16366338	2R_16366338_SNP [dm3] 2R_20478833_SNP [dm6]	C	G	1.131e^-4	1	UTR_3_PRIME CG12484
2L	8376916	2L_8376916_SNP [dm3] 2L_8376916_SNP [dm6]	G	A	1.138e^-4	1	UPSTREAM CG17294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16622624	3L_16622624_SNP [dm3] 3L_16629524_SNP [dm6]	T	C	1.148e^-4	1	INTRON Abl
3L	16497785	3L_16497785_SNP [dm3] 3L_16504685_SNP [dm6]	A	T	1.161e^-4	1	INTRON CG43373
X	12182174	X_12182174_SNP [dm3] X_12288141_SNP [dm6]	A	G	1.162e^-4	1	INTRON Ten-a
2L	20813655	2L_20813655_SNP [dm3] 2L_20813655_SNP [dm6]	A	G	1.169e^-4	1	SYNONYMOUS_CODING CG9328 DOWNSTREAM CG33322
X	11165005	X_11165005_SNP [dm3] X_11270972_SNP [dm6]	T	C	1.174e^-4	1	INTRON CG44422
X	11807312	X_11807312_SNP [dm3] X_11913279_SNP [dm6]	G	A	1.183e^-4	1	INTRON pot
X	9200232	X_9200232_SNP [dm3] X_9306199_SNP [dm6]	G	T	1.193e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7066704	2R_7066704_SNP [dm3] 2R_11179199_SNP [dm6]	A	G	1.201e^-4	1	INTRON shn	TF binding site mE1_TFBS_inv
3L	7976018	3L_7976018_SNP [dm3] 3L_7982918_SNP [dm6]	A	T	1.212e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3607111	3L_3607111_SNP [dm3] 3L_3607111_SNP [dm6]	G	A	1.221e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16497796	3L_16497796_SNP [dm3] 3L_16504696_SNP [dm6]	T	G	1.230e^-4	1	INTRON CG43373
X	7772346	X_7772346_SNP [dm3] X_7878313_SNP [dm6]	T	A	1.231e^-4	1	SYNONYMOUS_CODING Ir7d
2L	20819332	2L_20819332_SNP [dm3] 2L_20819332_SNP [dm6]	A	C	1.246e^-4	1	UPSTREAM CheB38a DOWNSTREAM CheB38c INTERGENIC
2R	16390280	2R_16390280_SNP [dm3] 2R_20502775_SNP [dm6]	A	G	1.248e^-4	1	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
X	11807098	X_11807098_SNP [dm3] X_11913065_SNP [dm6]	A	T	1.248e^-4	1	INTRON pot
X	11268348	X_11268348_DEL [dm3] X_11374315_DEL [dm6]	GC	G	1.262e^-4	1	UTR_5_PRIME dlg1
2L	4345904	2L_4345904_SNP [dm3] 2L_4345904_SNP [dm6]	C	T	1.272e^-4	1	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	1576568	3L_1576568_SNP [dm3] 3L_1576568_SNP [dm6]	G	A	1.301e^-4	1	UPSTREAM CG13917 DOWNSTREAM CG12004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9782506	2L_9782506_SNP [dm3] 2L_9782506_SNP [dm6]	G	A	1.303e^-4	1	UTR_5_PRIME IP3K1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8758018	2L_8758018_SNP [dm3] 2L_8758018_SNP [dm6]	G	C	1.311e^-4	1	INTERGENIC
2L	8758020	2L_8758020_SNP [dm3] 2L_8758020_SNP [dm6]	A	G	1.311e^-4	1	INTERGENIC
2R	12454411	2R_12454411_DEL [dm3] 2R_16566906_DEL [dm6]	AA	A	1.345e^-4	1	UTR_5_PRIME CG4945
2R	6438608	2R_6438608_SNP [dm3] 2R_10551103_SNP [dm6]	G	A	1.347e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4187641	2L_4187641_SNP [dm3] 2L_4187641_SNP [dm6]	A	G	1.349e^-4	1	UTR_5_PRIME CG31961 UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7065156	2R_7065156_SNP [dm3] 2R_11177651_SNP [dm6]	A	C	1.365e^-4	1	INTRON shn
2L	4187645	2L_4187645_SNP [dm3] 2L_4187645_SNP [dm6]	A	G	1.369e^-4	1	UTR_5_PRIME CG31961 UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15119247	2L_15119247_SNP [dm3] 2L_15119247_SNP [dm6]	T	A	1.369e^-4	1	UPSTREAM CR43853 INTERGENIC
2R	10928777	2R_10928777_SNP [dm3] 2R_15041272_SNP [dm6]	C	A	1.371e^-4	1	UTR_3_PRIME hbs
3L	20095416	3L_20095416_SNP [dm3] 3L_20102316_SNP [dm6]	C	G	1.372e^-4	1	INTRON CG14186
2L	10041959	2L_10041959_SNP [dm3] 2L_10041959_SNP [dm6]	G	A	1.373e^-4	1	INTERGENIC
2L	20829094	2L_20829094_INS [dm3] 2L_20829094_INS [dm6]	T	TTGTTATATAGGCTTAGGCA...	1.379e^-4	1	UPSTREAM CG31673 INTERGENIC
2R	16423047	2R_16423047_SNP [dm3] 2R_20535542_SNP [dm6]	A	G	1.383e^-4	1	UTR_3_PRIME CG18067 DOWNSTREAM CG18067
3R	4306636	3R_4306636_SNP [dm3] 3R_8480914_SNP [dm6]	G	A	1.384e^-4	1	INTERGENIC
3R	6917089	3R_6917089_SNP [dm3] 3R_11091367_SNP [dm6]	T	C	1.387e^-4	1	INTERGENIC
2L	8635024	2L_8635024_SNP [dm3] 2L_8635024_SNP [dm6]	A	C	1.389e^-4	1	INTRON Sema-1a
2L	4187642	2L_4187642_SNP [dm3] 2L_4187642_SNP [dm6]	C	T	1.401e^-4	1	START_GAINED CG31961 UTR_5_PRIME CG31961 UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	22065081	X_22065081_SNP [dm3] X_22663245_SNP [dm6]	A	G	1.401e^-4	1	INTRON CR44997
3R	22130606	3R_22130606_SNP [dm3] 3R_26304884_SNP [dm6]	A	G	1.412e^-4	1	INTERGENIC
X	18195825	X_18195825_SNP [dm3] X_18301792_SNP [dm6]	G	A	1.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18341693	2R_18341693_SNP [dm3] 2R_22454188_SNP [dm6]	T	C	1.430e^-4	1	UPSTREAM CG10384 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3189045	2L_3189045_DEL [dm3] 2L_3189045_DEL [dm6]	ATCTAGCCCATA...	A	1.438e^-4	1	INTRON CG34393
3L	7975835	3L_7975835_SNP [dm3] 3L_7982735_SNP [dm6]	T	C	1.438e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12097562	3L_12097562_SNP [dm3] 3L_12104462_SNP [dm6]	T	G	1.450e^-4	1	INTERGENIC
2L	20827799	2L_20827799_SNP [dm3] 2L_20827799_SNP [dm6]	C	T	1.455e^-4	1	DOWNSTREAM CG9331 INTERGENIC
2L	4345911	2L_4345911_SNP [dm3] 2L_4345911_SNP [dm6]	A	C	1.470e^-4	1	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	18980544	3R_18980544_SNP [dm3] 3R_23154822_SNP [dm6]	A	G	1.472e^-4	1	INTRON unk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10044440	2L_10044440_SNP [dm3] 2L_10044440_SNP [dm6]	A	G	1.479e^-4	1	INTERGENIC
3L	17443844	3L_17443844_SNP [dm3] 3L_17450744_SNP [dm6]	C	G	1.480e^-4	1	NON_SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	22741036	3R_22741036_SNP [dm3] 3R_26915314_SNP [dm6]	A	G	1.485e^-4	1	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12790123	3L_12790123_DEL [dm3] 3L_12797023_DEL [dm6]	AGCATGCAAA	A	1.491e^-4	1	DOWNSTREAM CG42709 INTRON Atg1
2L	9351976	2L_9351976_SNP [dm3] 2L_9351976_SNP [dm6]	T	C	1.497e^-4	1	DOWNSTREAM CG13110 INTERGENIC
2L	7149008	2L_7149008_SNP [dm3] 2L_7149008_SNP [dm6]	T	G	1.497e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12097576	3L_12097576_SNP [dm3] 3L_12104476_SNP [dm6]	A	C	1.502e^-4	1	INTERGENIC
2R	10607914	2R_10607914_SNP [dm3] 2R_14720409_SNP [dm6]	A	G	1.504e^-4	1	INTERGENIC
2L	20827795	2L_20827795_DEL [dm3] 2L_20827795_DEL [dm6]	TA	T	1.507e^-4	1	DOWNSTREAM CG9331 INTERGENIC
X	11938626	X_11938626_SNP [dm3] X_12044593_SNP [dm6]	A	T	1.512e^-4	1	INTRON CR43960 & 1 other
2R	17971442	2R_17971442_SNP [dm3] 2R_22083937_SNP [dm6]	G	A	1.529e^-4	1	SYNONYMOUS_CODING Synj	TF binding site mE1_TFBS_chinmo
3R	11924722	3R_11924722_SNP [dm3] 3R_16099000_SNP [dm6]	T	C	1.530e^-4	1	UPSTREAM Akt1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10741729	3L_10741729_SNP [dm3] 3L_10748629_SNP [dm6]	A	C	1.539e^-4	1	INTERGENIC
2L	12337210	2L_12337210_SNP [dm3] 2L_12337210_SNP [dm6]	C	T	1.544e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8288147	X_8288147_SNP [dm3] X_8394114_SNP [dm6]	T	G	1.555e^-4	1	INTERGENIC
2R	5343877	2R_5343877_SNP [dm3] 2R_9456372_SNP [dm6]	G	T	1.566e^-4	1	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3248920	X_3248920_SNP [dm3] X_3354887_SNP [dm6]	T	C	1.570e^-4	1	INTERGENIC
2L	7026716	2L_7026716_SNP [dm3] 2L_7026716_SNP [dm6]	G	A	1.570e^-4	1	SPLICE_SITE_REGION CG31908 UPSTREAM CG3476 INTRON CG31908	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	20228929	2L_20228929_SNP [dm3] 2L_20228929_SNP [dm6]	A	G	1.589e^-4	1	INTERGENIC
2R	17971365	2R_17971365_SNP [dm3] 2R_22083860_SNP [dm6]	C	A	1.592e^-4	1	SYNONYMOUS_CODING Synj	TF binding site mE1_TFBS_chinmo
2L	17836794	2L_17836794_SNP [dm3] 2L_17836794_SNP [dm6]	A	G	1.595e^-4	1	INTRON CadN2
2L	15441295	2L_15441295_SNP [dm3] 2L_15441295_SNP [dm6]	G	A	1.596e^-4	1	UPSTREAM CR44862 INTERGENIC
3L	16497739	3L_16497739_SNP [dm3] 3L_16504639_SNP [dm6]	A	T	1.601e^-4	1	INTRON CG43373
2L	5565759	2L_5565759_SNP [dm3] 2L_5565759_SNP [dm6]	T	A	1.601e^-4	1	UPSTREAM CR44794 EXON snRNA:U4:25F	TF binding site mE1_TFBS_cad
2L	5565771	2L_5565771_SNP [dm3] 2L_5565771_SNP [dm6]	G	A	1.601e^-4	1	UPSTREAM CR44794 DOWNSTREAM snRNA:U4:25F INTERGENIC	TF binding site mE1_TFBS_cad
2L	20925680	2L_20925680_SNP [dm3] 2L_20925680_SNP [dm6]	C	T	1.604e^-4	1	SYNONYMOUS_CODING RPA2 DOWNSTREAM CG9272	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	8886694	3L_8886694_SNP [dm3] 3L_8893594_SNP [dm6]	C	T	1.611e^-4	1	SYNONYMOUS_CODING Mcm7 DOWNSTREAM TrpA1	TF binding site mE1_TFBS_sens
3L	16497640	3L_16497640_SNP [dm3] 3L_16504540_SNP [dm6]	G	C	1.620e^-4	1	INTRON CG43373
3R	20439004	3R_20439004_SNP [dm3] 3R_24613282_SNP [dm6]	T	C	1.627e^-4	1	INTRON mld
X	4739685	X_4739685_SNP [dm3] X_4845652_SNP [dm6]	C	T	1.637e^-4	1	INTRON CG42594
2L	7215802	2L_7215802_SNP [dm3] 2L_7215802_SNP [dm6]	T	G	1.643e^-4	1	INTRON CG13784
3L	8309985	3L_8309985_SNP [dm3] 3L_8316885_SNP [dm6]	G	T	1.646e^-4	1	INTERGENIC
2R	7483082	2R_7483082_SNP [dm3] 2R_11595577_SNP [dm6]	C	G	1.651e^-4	1	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21924769	3R_21924769_SNP [dm3] 3R_26099047_SNP [dm6]	C	T	1.652e^-4	1	UPSTREAM dys INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6438599	2R_6438599_SNP [dm3] 2R_10551094_SNP [dm6]	G	T	1.659e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13734981	2R_13734981_SNP [dm3] 2R_17847476_SNP [dm6]	A	G	1.670e^-4	1	SYNONYMOUS_CODING olf186-M INTRON olf186-F
3R	21946524	3R_21946524_SNP [dm3] 3R_26120802_SNP [dm6]	T	C	1.679e^-4	1	INTRON CG31324
X	2398842	X_2398842_SNP [dm3] X_2504809_SNP [dm6]	G	T	1.679e^-4	1	INTRON trol	TF binding site mE1_TFBS_cad
3L	10231324	3L_10231324_SNP [dm3] 3L_10238224_SNP [dm6]	C	G	1.691e^-4	1	INTERGENIC
2L	2462125	2L_2462125_SNP [dm3] 2L_2462125_SNP [dm6]	C	T	1.701e^-4	1	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16641903	2R_16641903_SNP [dm3] 2R_20754398_SNP [dm6]	C	T	1.716e^-4	1	DOWNSTREAM CG34202 INTERGENIC
2L	2738328	2L_2738328_SNP [dm3] 2L_2738328_SNP [dm6]	C	T	1.718e^-4	1	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6359640	2R_6359640_SNP [dm3] 2R_10472135_SNP [dm6]	T	C	1.728e^-4	1	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_inv
2R	12454435	2R_12454435_SNP [dm3] 2R_16566930_SNP [dm6]	G	T	1.741e^-4	1	UTR_5_PRIME CG4945
2R	15687323	2R_15687323_SNP [dm3] 2R_19799818_SNP [dm6]	T	C	1.742e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2572263	2L_2572263_SNP [dm3] 2L_2572263_SNP [dm6]	T	G	1.745e^-4	1	INTRON Cyp309a2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	16497813	3L_16497813_SNP [dm3] 3L_16504713_SNP [dm6]	G	T	1.760e^-4	1	INTRON CG43373
3R	22057392	3R_22057392_SNP [dm3] 3R_26231670_SNP [dm6]	A	G	1.799e^-4	1	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
3L	16497653	3L_16497653_SNP [dm3] 3L_16504553_SNP [dm6]	A	T	1.801e^-4	1	INTRON CG43373
X	6554175	X_6554175_SNP [dm3] X_6660142_SNP [dm6]	A	G	1.811e^-4	1	DOWNSTREAM CG3224 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16497709	3L_16497709_INS [dm3] 3L_16504609_INS [dm6]	A	AC	1.814e^-4	1	INTRON CG43373
3R	16649201	3R_16649201_SNP [dm3] 3R_20823479_SNP [dm6]	G	A	1.815e^-4	1	SYNONYMOUS_CODING CG17272 DOWNSTREAM snoRNA:Psi18S-1295 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	20827800	2L_20827800_SNP [dm3] 2L_20827800_SNP [dm6]	C	G	1.815e^-4	1	DOWNSTREAM CG9331 INTERGENIC
3L	10570202	3L_10570202_INS [dm3] 3L_10577102_INS [dm6]	T	CAAAAA	1.818e^-4	1	INTRON A2bp1
3L	19564278	3L_19564278_SNP [dm3] 3L_19571178_SNP [dm6]	T	A	1.830e^-4	1	DOWNSTREAM Shal INTRON Shal
2L	4187633	2L_4187633_SNP [dm3] 2L_4187633_SNP [dm6]	T	C	1.836e^-4	1	UTR_5_PRIME CG31961 UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4547442	2R_4547442_SNP [dm3] 2R_8659937_SNP [dm6]	T	C	1.836e^-4	1	INTRON ptc	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	9121196	X_9121196_SNP [dm3] X_9227163_SNP [dm6]	G	A	1.840e^-4	1	UTR_5_PRIME Gr8a DOWNSTREAM CG15370
X	20206883	X_20206883_SNP [dm3] X_20335856_SNP [dm6]	C	T	1.843e^-4	1	INTERGENIC
2R	15128186	2R_15128186_SNP [dm3] 2R_19240681_SNP [dm6]	A	C	1.849e^-4	1	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20826580	2L_20826580_SNP [dm3] 2L_20826580_SNP [dm6]	A	G	1.861e^-4	1	INTRON CG9331
3L	16497773	3L_16497773_DEL [dm3] 3L_16504673_DEL [dm6]	ACAC	A	1.867e^-4	1	INTRON CG43373
3L	16497808	3L_16497808_SNP [dm3] 3L_16504708_SNP [dm6]	G	A	1.867e^-4	1	INTRON CG43373
2L	9125974	2L_9125974_DEL [dm3] 2L_9125974_DEL [dm6]	CG	C	1.869e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	919022	3L_919022_INS [dm3] 3L_919022_INS [dm6]	T	TATGTGT	1.881e^-4	1	INTRON Glut1
2R	14128725	2R_14128725_SNP [dm3] 2R_18241220_SNP [dm6]	T	C	1.889e^-4	1	INTERGENIC
3R	27132665	3R_27132665_SNP [dm3] 3R_31306943_SNP [dm6]	T	C	1.898e^-4	1	INTERGENIC
2R	11450106	2R_11450106_DEL [dm3] 2R_15562601_DEL [dm6]	CGACATTAT	C	1.906e^-4	1	DOWNSTREAM CG8195 & 1 other INTERGENIC
3L	16497701	3L_16497701_MNP [dm3] 3L_16504601_MNP [dm6]	TCCCCCCT	ATTATAAA	1.912e^-4	1	INTRON CG43373
3L	16497713	3L_16497713_SNP [dm3] 3L_16504613_SNP [dm6]	T	A	1.912e^-4	1	INTRON CG43373
3L	16497715	3L_16497715_MNP [dm3] 3L_16504615_MNP [dm6]	TTAT	AACC	1.912e^-4	1	INTRON CG43373
3L	3607146	3L_3607146_SNP [dm3] 3L_3607146_SNP [dm6]	C	G	1.933e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14129048	2R_14129048_SNP [dm3] 2R_18241543_SNP [dm6]	C	T	1.934e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6992945	2R_6992945_SNP [dm3] 2R_11105440_SNP [dm6]	C	A	1.945e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_dl
X	10855437	X_10855437_SNP [dm3] X_10961404_SNP [dm6]	C	T	1.945e^-4	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	14561877	2R_14561877_SNP [dm3] 2R_18674372_SNP [dm6]	T	C	1.966e^-4	1	UPSTREAM edl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	7235013	2L_7235013_SNP [dm3] 2L_7235013_SNP [dm6]	T	C	1.970e^-4	1	INTRON Ndae1
X	18618622	X_18618622_SNP [dm3] X_18724589_SNP [dm6]	C	T	1.973e^-4	1	DOWNSTREAM CG42302 INTRON CCKLR-17D1
2L	16104628	2L_16104628_INS [dm3] 2L_16104628_INS [dm6]	A	ATGCGT	1.975e^-4	1	INTERGENIC
3R	13541341	3R_13541341_SNP [dm3] 3R_17715619_SNP [dm6]	G	A	1.986e^-4	1	INTRON osa	TF binding site BDTNP1_TFBS_dl
X	19027377	X_19027377_SNP [dm3] X_19133344_SNP [dm6]	T	C	1.990e^-4	1	EXON CR45711
3L	3607160	3L_3607160_SNP [dm3] 3L_3607160_SNP [dm6]	T	G	2.015e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16497688	3L_16497688_SNP [dm3] 3L_16504588_SNP [dm6]	C	T	2.038e^-4	1	INTRON CG43373
3R	26851522	3R_26851522_SNP [dm3] 3R_31025800_SNP [dm6]	T	G	2.040e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14513166	X_14513166_MNP [dm3] X_14619133_MNP [dm6]	GGG	TAA	2.044e^-4	1	INTRON NetA
2L	2828719	2L_2828719_INS [dm3] 2L_2828719_INS [dm6]	A	GTTG	2.044e^-4	1	INTRON Duox	TF binding site BDTNP1_TFBS_dl
3R	26090039	3R_26090039_DEL [dm3] 3R_30264317_DEL [dm6]	CGAGA	C	2.049e^-4	1	INTERGENIC
3L	10048463	3L_10048463_SNP [dm3] 3L_10055363_SNP [dm6]	G	T	2.049e^-4	1	INTRON dpr6
3L	16497780	3L_16497780_SNP [dm3] 3L_16504680_SNP [dm6]	A	C	2.053e^-4	1	INTRON CG43373
2R	11078345	2R_11078345_SNP [dm3] 2R_15190840_SNP [dm6]	T	G	2.056e^-4	1	DOWNSTREAM igl INTERGENIC
3R	24307024	3R_24307024_SNP [dm3] 3R_28481302_SNP [dm6]	C	T	2.056e^-4	1	INTERGENIC
3L	3031662	3L_3031662_SNP [dm3] 3L_3031662_SNP [dm6]	G	C	2.058e^-4	1	INTERGENIC
X	21192864	X_21192864_SNP [dm3] X_21321837_SNP [dm6]	T	C	2.062e^-4	1	INTRON Dd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7634394	X_7634394_SNP [dm3] X_7740361_SNP [dm6]	A	G	2.071e^-4	1	DOWNSTREAM Tom40 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	12731505	3L_12731505_SNP [dm3] 3L_12738405_SNP [dm6]	C	T	2.084e^-4	1	SPLICE_SITE_REGION Ptp69D INTRON Ptp69D
2R	14620477	2R_14620477_SNP [dm3] 2R_18732972_SNP [dm6]	G	A	2.092e^-4	1	INTRON Hs3st-A
3L	10116638	3L_10116638_SNP [dm3] 3L_10123538_SNP [dm6]	G	C	2.095e^-4	1	INTRON dpr6
3R	23976256	3R_23976256_INS [dm3] 3R_28150534_INS [dm6]	A	ACTTAAGTCCCGC...	2.102e^-4	1	INTRON CG34354
2R	7789756	2R_7789756_SNP [dm3] 2R_11902251_SNP [dm6]	C	T	2.106e^-4	1	DOWNSTREAM Zip48C INTRON MCPH1
2L	6049520	2L_6049520_SNP [dm3] 2L_6049520_SNP [dm6]	A	G	2.113e^-4	1	SYNONYMOUS_CODING CG12393 UPSTREAM CG34179 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4194535	2L_4194535_SNP [dm3] 2L_4194535_SNP [dm6]	T	C	2.134e^-4	1	INTRON CG3714
X	14191313	X_14191313_SNP [dm3] X_14297280_SNP [dm6]	A	G	2.135e^-4	1	INTERGENIC
3R	14810767	3R_14810767_SNP [dm3] 3R_18985045_SNP [dm6]	T	C	2.144e^-4	1	SYNONYMOUS_CODING gukh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	1588193	X_1588193_SNP [dm3] X_1694160_SNP [dm6]	T	A	2.153e^-4	1	UTR_3_PRIME a6 DOWNSTREAM CG14798	TF binding site mE1_TFBS_chinmo
3L	16497656	3L_16497656_DEL [dm3] 3L_16504556_DEL [dm6]	TAAATGTT	T	2.155e^-4	1	INTRON CG43373
X	19447680	X_19447680_SNP [dm3] X_19553647_SNP [dm6]	A	T	2.162e^-4	1	INTERGENIC
3L	2821682	3L_2821682_SNP [dm3] 3L_2821682_SNP [dm6]	G	C	2.163e^-4	1	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8288133	X_8288133_SNP [dm3] X_8394100_SNP [dm6]	T	A	2.169e^-4	1	INTERGENIC
2R	20801378	2R_20801378_SNP [dm3] 2R_24913855_SNP [dm6]	A	G	2.171e^-4	1	INTRON NaCP60E	TF binding site mE1_TFBS_inv
2L	10523433	2L_10523433_SNP [dm3] 2L_10523433_SNP [dm6]	G	A	2.176e^-4	1	INTERGENIC
3R	18900497	3R_18900497_SNP [dm3] 3R_23074775_SNP [dm6]	T	C	2.177e^-4	1	INTRON CG13830
3L	13241445	3L_13241445_SNP [dm3] 3L_13248345_SNP [dm6]	T	C	2.183e^-4	1	SYNONYMOUS_CODING CG32119 INTRON caps
3R	26060417	3R_26060417_SNP [dm3] 3R_30234695_SNP [dm6]	A	G	2.193e^-4	1	INTERGENIC
2L	12337027	2L_12337027_SNP [dm3] 2L_12337027_SNP [dm6]	G	C	2.207e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1175432	2L_1175432_SNP [dm3] 2L_1175432_SNP [dm6]	T	C	2.229e^-4	1	SYNONYMOUS_CODING CG4887	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	21926821	3R_21926821_SNP [dm3] 3R_26101099_SNP [dm6]	T	C	2.229e^-4	1	INTERGENIC
2L	21802168	2L_21802168_SNP [dm3] 2L_21802168_SNP [dm6]	C	A	2.238e^-4	1	INTERGENIC
2L	7215756	2L_7215756_SNP [dm3] 2L_7215756_SNP [dm6]	G	A	2.263e^-4	1	INTRON CG13784
3L	14515183	3L_14515183_SNP [dm3] 3L_14522083_SNP [dm6]	C	T	2.286e^-4	1	UPSTREAM CG4613 INTRON bbg
2R	8905491	2R_8905491_SNP [dm3] 2R_13017986_SNP [dm6]	T	C	2.289e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	17196759	3L_17196759_SNP [dm3] 3L_17203659_SNP [dm6]	G	A	2.292e^-4	1	INTRON Rbp6
3L	10581692	3L_10581692_SNP [dm3] 3L_10588592_SNP [dm6]	T	A	2.294e^-4	1	INTRON A2bp1
2L	16721216	2L_16721216_SNP [dm3] 2L_16721216_SNP [dm6]	T	C	2.309e^-4	1	UPSTREAM Cyt-c-p INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8634767	2L_8634767_SNP [dm3] 2L_8634767_SNP [dm6]	A	G	2.309e^-4	1	INTRON Sema-1a
2L	6255491	2L_6255491_SNP [dm3] 2L_6255491_SNP [dm6]	C	T	2.315e^-4	1	UPSTREAM CG9486 INTRON Ddr
2R	10613550	2R_10613550_SNP [dm3] 2R_14726045_SNP [dm6]	C	T	2.316e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12350979	3R_12350979_SNP [dm3] 3R_16525257_SNP [dm6]	T	A	2.319e^-4	1	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	5537416	3L_5537416_SNP [dm3] 3L_5544316_SNP [dm6]	G	A	2.321e^-4	1	DOWNSTREAM CG10625 INTRON CG10625
2L	3690205	2L_3690205_SNP [dm3] 2L_3690205_SNP [dm6]	T	A	2.334e^-4	1	INTRON CG34340
3R	26051982	3R_26051982_SNP [dm3] 3R_30226260_SNP [dm6]	A	T	2.342e^-4	1	INTERGENIC
3L	7424666	3L_7424666_SNP [dm3] 3L_7431566_SNP [dm6]	A	T	2.344e^-4	1	INTRON CG42458
3R	23739512	3R_23739512_SNP [dm3] 3R_27913790_SNP [dm6]	C	T	2.344e^-4	1	UTR_3_PRIME CG5003 DOWNSTREAM hanabi
X	1583964	X_1583964_SNP [dm3] X_1689931_SNP [dm6]	T	A	2.347e^-4	1	UTR_3_PRIME b6 INTRON CG32809	TF binding site mE1_TFBS_chinmo
3R	22057716	3R_22057716_SNP [dm3] 3R_26231994_SNP [dm6]	C	T	2.348e^-4	1	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16497791	3L_16497791_SNP [dm3] 3L_16504691_SNP [dm6]	G	C	2.365e^-4	1	INTRON CG43373
3L	10741645	3L_10741645_SNP [dm3] 3L_10748545_SNP [dm6]	T	C	2.375e^-4	1	INTERGENIC
3L	8310024	3L_8310024_SNP [dm3] 3L_8316924_SNP [dm6]	T	G	2.379e^-4	1	INTERGENIC
3L	7975710	3L_7975710_SNP [dm3] 3L_7982610_SNP [dm6]	G	A	2.389e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2724159	3L_2724159_SNP [dm3] 3L_2724159_SNP [dm6]	T	C	2.391e^-4	1	INTRON Mrtf
3L	18159312	3L_18159312_SNP [dm3] 3L_18166212_SNP [dm6]	T	C	2.396e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15688430	2R_15688430_SNP [dm3] 2R_19800925_SNP [dm6]	G	A	2.402e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8310030	3L_8310030_SNP [dm3] 3L_8316930_SNP [dm6]	G	C	2.404e^-4	1	INTERGENIC
2R	16929448	2R_16929448_SNP [dm3] 2R_21041943_SNP [dm6]	C	A	2.412e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19903943	2R_19903943_SNP [dm3] 2R_24016420_SNP [dm6]	T	A	2.413e^-4	1	SYNONYMOUS_CODING CG4324	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27491102	3R_27491102_SNP [dm3] 3R_31665380_SNP [dm6]	A	G	2.415e^-4	1	DOWNSTREAM kek6 INTERGENIC
2L	2003941	2L_2003941_SNP [dm3] 2L_2003941_SNP [dm6]	G	T	2.428e^-4	1	DOWNSTREAM CR43464 INTRON CG33543
3L	3521660	3L_3521660_INS [dm3] 3L_3521660_INS [dm6]	A	AA	2.452e^-4	1	INTRON Eip63E
2R	18291056	2R_18291056_SNP [dm3] 2R_22403551_SNP [dm6]	T	C	2.464e^-4	1	UPSTREAM CG6044 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9200094	X_9200094_DEL [dm3] X_9306061_DEL [dm6]	CT	G	2.467e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5537286	3L_5537286_SNP [dm3] 3L_5544186_SNP [dm6]	G	A	2.473e^-4	1	DOWNSTREAM CG10625 INTRON CG10625
2R	6795597	2R_6795597_SNP [dm3] 2R_10908092_SNP [dm6]	T	C	2.480e^-4	1	INTERGENIC
X	7739174	X_7739174_SNP [dm3] X_7845141_SNP [dm6]	C	G	2.483e^-4	1	INTERGENIC
3L	7975800	3L_7975800_SNP [dm3] 3L_7982700_SNP [dm6]	C	T	2.512e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9870689	3R_9870689_SNP [dm3] 3R_14044967_SNP [dm6]	T	C	2.515e^-4	1	UPSTREAM tRNA:S2b:88A INTERGENIC
2R	14959655	2R_14959655_SNP [dm3] 2R_19072150_SNP [dm6]	C	A	2.527e^-4	1	INTRON 5-HT1A
3R	22130832	3R_22130832_SNP [dm3] 3R_26305110_SNP [dm6]	A	G	2.532e^-4	1	INTERGENIC
3R	15478570	3R_15478570_SNP [dm3] 3R_19652848_SNP [dm6]	T	C	2.538e^-4	1	SYNONYMOUS_CODING CG6184 DOWNSTREAM CG31219	TF binding site mE1_TFBS_chinmo
2R	10701816	2R_10701816_DEL [dm3] 2R_14814311_DEL [dm6]	TT	T	2.539e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
X	1587487	X_1587487_SNP [dm3] X_1693454_SNP [dm6]	C	A	2.551e^-4	1	NON_SYNONYMOUS_CODING CG14798 UPSTREAM CG32809 DOWNSTREAM a6	TF binding site mE1_TFBS_HSA
3L	3254230	3L_3254230_SNP [dm3] 3L_3254230_SNP [dm6]	A	G	2.555e^-4	1	EXON CR43626
X	15588879	X_15588879_SNP [dm3] X_15694846_SNP [dm6]	T	C	2.562e^-4	1	UPSTREAM CR45524 DOWNSTREAM CR45526 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3542789	X_3542789_SNP [dm3] X_3648756_SNP [dm6]	C	T	2.564e^-4	1	INTRON AstA-R1
2R	17986432	2R_17986432_SNP [dm3] 2R_22098927_SNP [dm6]	A	G	2.565e^-4	1	INTRON CG11073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4546945	2R_4546945_SNP [dm3] 2R_8659440_SNP [dm6]	A	G	2.569e^-4	1	INTRON ptc	TF binding site mE1_TFBS_cad
3L	12790396	3L_12790396_DEL [dm3] 3L_12797296_DEL [dm6]	AAAATG	C	2.570e^-4	1	INTRON Atg1
X	2216170	X_2216170_SNP [dm3] X_2322137_SNP [dm6]	C	G	2.575e^-4	1	INTRON phl EXON CR34052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11555093	X_11555093_SNP [dm3] X_11661060_SNP [dm6]	T	C	2.580e^-4	1	INTRON Ptp10D
3L	2158009	3L_2158009_SNP [dm3] 3L_2158009_SNP [dm6]	A	G	2.583e^-4	1	INTRON CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16497783	3L_16497783_SNP [dm3] 3L_16504683_SNP [dm6]	A	T	2.586e^-4	1	INTRON CG43373
3L	11052220	3L_11052220_SNP [dm3] 3L_11059120_SNP [dm6]	A	T	2.590e^-4	1	DOWNSTREAM CG6321 INTRON CG7888
3R	22057567	3R_22057567_SNP [dm3] 3R_26231845_SNP [dm6]	T	C	2.604e^-4	1	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15257836	X_15257836_SNP [dm3] X_15363803_SNP [dm6]	G	A	2.606e^-4	1	INTRON acj6
3R	20276310	3R_20276310_SNP [dm3] 3R_24450588_SNP [dm6]	C	T	2.618e^-4	1	INTRON nAChRalpha1
2R	16757355	2R_16757355_SNP [dm3] 2R_20869850_SNP [dm6]	T	C	2.618e^-4	1	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16726080	X_16726080_SNP [dm3] X_16832047_SNP [dm6]	G	T	2.619e^-4	1	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
2R	14778764	2R_14778764_SNP [dm3] 2R_18891259_SNP [dm6]	A	C	2.627e^-4	1	INTRON sano
2R	9560716	2R_9560716_DEL [dm3] 2R_13673211_DEL [dm6]	AAGAGC	A	2.631e^-4	1	DOWNSTREAM CR45032 INTRON fas
3L	20459694	3L_20459694_SNP [dm3] 3L_20466594_SNP [dm6]	A	T	2.633e^-4	1	UPSTREAM CG42764 & 1 other INTERGENIC
3L	7932382	3L_7932382_SNP [dm3] 3L_7939282_SNP [dm6]	C	A	2.637e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	21277321	X_21277321_SNP [dm3] X_21406294_SNP [dm6]	G	T	2.645e^-4	1	INTERGENIC
X	3124960	X_3124960_SNP [dm3] X_3230927_SNP [dm6]	C	T	2.647e^-4	1	INTRON dnc
2L	16661158	2L_16661158_SNP [dm3] 2L_16661158_SNP [dm6]	C	T	2.648e^-4	1	SYNONYMOUS_CODING CG42389	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9646843	2L_9646843_SNP [dm3] 2L_9646843_SNP [dm6]	C	G	2.657e^-4	1	SYNONYMOUS_CODING Apoltp
3L	10456289	3L_10456289_SNP [dm3] 3L_10463189_SNP [dm6]	A	G	2.671e^-4	1	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	11322310	2L_11322310_SNP [dm3] 2L_11322310_SNP [dm6]	A	T	2.677e^-4	1	INTERGENIC
3R	24409082	3R_24409082_SNP [dm3] 3R_28583360_SNP [dm6]	A	G	2.686e^-4	1	SYNONYMOUS_CODING fkh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4355922	3L_4355922_DEL [dm3] 3L_4355922_DEL [dm6]	AGCCA	A	2.694e^-4	1	INTRON Cip4
2R	4546947	2R_4546947_SNP [dm3] 2R_8659442_SNP [dm6]	G	A	2.694e^-4	1	INTRON ptc	TF binding site mE1_TFBS_cad
3L	890576	3L_890576_SNP [dm3] 3L_890576_SNP [dm6]	T	C	2.699e^-4	1	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_cad
3L	8310027	3L_8310027_SNP [dm3] 3L_8316927_SNP [dm6]	T	C	2.704e^-4	1	INTERGENIC
2R	16391262	2R_16391262_SNP [dm3] 2R_20503757_SNP [dm6]	A	T	2.705e^-4	1	UPSTREAM Obp57b INTRON Obp57c	regulatory region REDfly_CRMs
2L	2542444	2L_2542444_SNP [dm3] 2L_2542444_SNP [dm6]	T	A	2.708e^-4	1	INTERGENIC
2R	10693226	2R_10693226_SNP [dm3] 2R_14805721_SNP [dm6]	A	T	2.717e^-4	1	INTRON kn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9782355	2L_9782355_SNP [dm3] 2L_9782355_SNP [dm6]	T	G	2.719e^-4	1	UPSTREAM IP3K1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	19215036	3R_19215036_SNP [dm3] 3R_23389314_SNP [dm6]	T	C	2.725e^-4	1	UPSTREAM CG31515 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	10856057	X_10856057_SNP [dm3] X_10962024_SNP [dm6]	C	T	2.726e^-4	1	INTRON Myo10A
2L	1329981	2L_1329981_SNP [dm3] 2L_1329981_SNP [dm6]	C	T	2.732e^-4	1	UTR_3_PRIME a5
3L	12731539	3L_12731539_SNP [dm3] 3L_12738439_SNP [dm6]	T	C	2.733e^-4	1	INTRON Ptp69D
X	16752300	X_16752300_SNP [dm3] X_16858267_SNP [dm6]	A	G	2.735e^-4	1	INTRON CG13003
2R	19894960	2R_19894960_DEL [dm3] 2R_24007437_DEL [dm6]	AA	A	2.735e^-4	1	INTRON Unc-89
2R	13682259	2R_13682259_SNP [dm3] 2R_17794754_SNP [dm6]	A	G	2.764e^-4	1	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2140375	2L_2140375_SNP [dm3] 2L_2140375_SNP [dm6]	C	T	2.765e^-4	1	SPLICE_SITE_REGION tho2 INTRON tho2	TF binding site mE1_TFBS_cad
3R	15004313	3R_15004313_SNP [dm3] 3R_19178591_SNP [dm6]	G	A	2.769e^-4	1	DOWNSTREAM CG14282 INTRON CG5555	TF binding site mE1_TFBS_sens
3L	18159326	3L_18159326_SNP [dm3] 3L_18166226_SNP [dm6]	C	T	2.789e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7052605	2R_7052605_SNP [dm3] 2R_11165100_SNP [dm6]	G	T	2.790e^-4	1	INTRON shn & 1 other
2L	8324786	2L_8324786_SNP [dm3] 2L_8324786_SNP [dm6]	A	G	2.794e^-4	1	INTRON CG7781
X	8288747	X_8288747_SNP [dm3] X_8394714_SNP [dm6]	G	T	2.797e^-4	1	INTERGENIC
2R	14620281	2R_14620281_SNP [dm3] 2R_18732776_SNP [dm6]	C	T	2.805e^-4	1	INTRON Hs3st-A
X	10027029	X_10027029_SNP [dm3] X_10132996_SNP [dm6]	C	T	2.814e^-4	1	INTRON CR44894 & 1 other
3R	25879406	3R_25879406_SNP [dm3] 3R_30053684_SNP [dm6]	G	A	2.815e^-4	1	SYNONYMOUS_CODING CG7946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19570777	2L_19570777_SNP [dm3] 2L_19570777_SNP [dm6]	A	C	2.820e^-4	1	UPSTREAM mir-2a-1 & 1 other INTRON spi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17587037	X_17587037_INS [dm3] X_17693004_INS [dm6]	A	AA	2.821e^-4	1	INTRON chas
2R	10558564	2R_10558564_SNP [dm3] 2R_14671059_SNP [dm6]	T	G	2.832e^-4	1	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866 DOWNSTREAM mspo
3L	10741756	3L_10741756_SNP [dm3] 3L_10748656_SNP [dm6]	G	T	2.846e^-4	1	INTERGENIC
2L	18789636	2L_18789636_SNP [dm3] 2L_18789636_SNP [dm6]	T	A	2.847e^-4	1	INTRON ham	TF binding site mE1_TFBS_cad
2R	17928845	2R_17928845_SNP [dm3] 2R_22041340_SNP [dm6]	A	C	2.847e^-4	1	DOWNSTREAM PpD5 INTERGENIC
3R	25879385	3R_25879385_SNP [dm3] 3R_30053663_SNP [dm6]	G	A	2.848e^-4	1	SYNONYMOUS_CODING CG7946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12654524	3L_12654524_SNP [dm3] 3L_12661424_SNP [dm6]	G	A	2.860e^-4	1	UPSTREAM CR44552 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7121702	2R_7121702_SNP [dm3] 2R_11234197_SNP [dm6]	G	A	2.864e^-4	1	SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
3R	17831812	3R_17831812_SNP [dm3] 3R_22006090_SNP [dm6]	A	G	2.875e^-4	1	SYNONYMOUS_CODING Eip93F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10693247	2R_10693247_SNP [dm3] 2R_14805742_SNP [dm6]	A	G	2.877e^-4	1	INTRON kn	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3502085	2L_3502085_SNP [dm3] 2L_3502085_SNP [dm6]	G	C	2.878e^-4	1	SYNONYMOUS_CODING tim
2R	7132904	2R_7132904_SNP [dm3] 2R_11245399_SNP [dm6]	C	G	2.901e^-4	1	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3L	17984703	3L_17984703_SNP [dm3] 3L_17991603_SNP [dm6]	A	G	2.905e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6557527	2R_6557527_SNP [dm3] 2R_10670022_SNP [dm6]	C	T	2.908e^-4	1	INTERGENIC
2L	20826626	2L_20826626_SNP [dm3] 2L_20826626_SNP [dm6]	C	A	2.922e^-4	1	SPLICE_SITE_REGION CG9331 INTRON CG9331
3L	3476954	3L_3476954_SNP [dm3] 3L_3476954_SNP [dm6]	T	A	2.924e^-4	1	INTRON CG42324
X	15464182	X_15464182_SNP [dm3] X_15570149_SNP [dm6]	G	T	2.926e^-4	1	NON_SYNONYMOUS_CODING CG7860 DOWNSTREAM CG15643
3L	10116527	3L_10116527_SNP [dm3] 3L_10123427_SNP [dm6]	A	T	2.927e^-4	1	INTRON dpr6
2R	2774518	2R_2774518_SNP [dm3] 2R_6887013_SNP [dm6]	G	A	2.936e^-4	1	SYNONYMOUS_CODING Spn42De	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6557589	2R_6557589_SNP [dm3] 2R_10670084_SNP [dm6]	A	C	2.946e^-4	1	INTERGENIC
3L	10116550	3L_10116550_DEL [dm3] 3L_10123450_DEL [dm6]	AG	T	2.946e^-4	1	INTRON dpr6
3R	3119485	3R_3119485_SNP [dm3] 3R_7293763_SNP [dm6]	C	G	2.952e^-4	1	INTRON rn
2L	2140447	2L_2140447_SNP [dm3] 2L_2140447_SNP [dm6]	T	G	2.970e^-4	1	SYNONYMOUS_CODING tho2	TF binding site mE1_TFBS_cad
X	10155012	X_10155012_DEL [dm3] X_10260979_DEL [dm6]	TGG	T	2.980e^-4	1	INTRON Hk EXON CR43959	TF binding site BDTNP1_TFBS_dl
2L	8634770	2L_8634770_SNP [dm3] 2L_8634770_SNP [dm6]	C	T	2.980e^-4	1	INTRON Sema-1a
2R	12830159	2R_12830159_SNP [dm3] 2R_16942654_SNP [dm6]	G	A	2.986e^-4	1	INTRON Pkc53E
2R	3773326	2R_3773326_SNP [dm3] 2R_7885821_SNP [dm6]	A	G	2.988e^-4	1	UTR_5_PRIME Dgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4077287	3L_4077287_SNP [dm3] 3L_4077287_SNP [dm6]	T	G	2.989e^-4	1	INTRON Gad1
3L	18152772	3L_18152772_SNP [dm3] 3L_18159672_SNP [dm6]	A	G	2.993e^-4	1	INTRON CG13699	TF binding site mE1_TFBS_HSA
3L	9276393	3L_9276393_DEL [dm3] 3L_9283293_DEL [dm6]	AACACAA	A	2.995e^-4	1	INTRON GluRIB
3R	13644640	3R_13644640_SNP [dm3] 3R_17818918_SNP [dm6]	C	G	3.004e^-4	1	INTRON tinc
3L	2674011	3L_2674011_SNP [dm3] 3L_2674011_SNP [dm6]	C	A	3.011e^-4	1	INTRON Fife
2R	5298346	2R_5298346_SNP [dm3] 2R_9410841_SNP [dm6]	G	A	3.052e^-4	1	INTRON wun
2R	14137733	2R_14137733_SNP [dm3] 2R_18250228_SNP [dm6]	A	G	3.061e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5841606	3L_5841606_SNP [dm3] 3L_5848506_SNP [dm6]	A	C	3.061e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7132890	2R_7132890_SNP [dm3] 2R_11245385_SNP [dm6]	C	T	3.062e^-4	1	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3R	22057908	3R_22057908_SNP [dm3] 3R_26232186_SNP [dm6]	A	G	3.062e^-4	1	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20819457	2L_20819457_SNP [dm3] 2L_20819457_SNP [dm6]	C	G	3.067e^-4	1	UPSTREAM CheB38a DOWNSTREAM CheB38c INTERGENIC
2L	2439829	2L_2439829_SNP [dm3] 2L_2439829_SNP [dm6]	A	T	3.072e^-4	1	INTRON dpp	regulatory region REDfly_CRMs
X	14321507	X_14321507_SNP [dm3] X_14427474_SNP [dm6]	A	G	3.073e^-4	1	INTRON dpr8
3L	9562950	3L_9562950_SNP [dm3] 3L_9569850_SNP [dm6]	T	A	3.087e^-4	1	INTRON CG42673
3L	1977838	3L_1977838_SNP [dm3] 3L_1977838_SNP [dm6]	G	C	3.087e^-4	1	INTERGENIC
2R	18034842	2R_18034842_SNP [dm3] 2R_22147337_SNP [dm6]	G	T	3.088e^-4	1	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18791797	2L_18791797_SNP [dm3] 2L_18791797_SNP [dm6]	A	C	3.093e^-4	1	INTRON ham	transposable element FlyBase
2R	6798192	2R_6798192_SNP [dm3] 2R_10910687_SNP [dm6]	C	T	3.097e^-4	1	DOWNSTREAM Obp47a INTERGENIC
2L	11322313	2L_11322313_SNP [dm3] 2L_11322313_SNP [dm6]	T	A	3.099e^-4	1	INTERGENIC
2L	8634875	2L_8634875_SNP [dm3] 2L_8634875_SNP [dm6]	T	G	3.105e^-4	1	INTRON Sema-1a
X	1679591	X_1679591_SNP [dm3] X_1785558_SNP [dm6]	T	A	3.106e^-4	1	UTR_3_PRIME Adar INTRON CG42666
3L	2436242	3L_2436242_DEL [dm3] 3L_2436242_DEL [dm6]	AT	A	3.112e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11917920	2L_11917920_SNP [dm3] 2L_11917920_SNP [dm6]	G	C	3.118e^-4	1	INTRON Pde1c
2R	7113632	2R_7113632_SNP [dm3] 2R_11226127_SNP [dm6]	G	C	3.127e^-4	1	UTR_3_PRIME CG7737 DOWNSTREAM metro	TF binding site mE1_TFBS_cad
X	5326112	X_5326112_SNP [dm3] X_5432079_SNP [dm6]	C	T	3.130e^-4	1	NON_SYNONYMOUS_CODING CG15784	TF binding site mE1_TFBS_chinmo
X	5326116	X_5326116_SNP [dm3] X_5432083_SNP [dm6]	T	C	3.130e^-4	1	SYNONYMOUS_CODING CG15784	TF binding site mE1_TFBS_chinmo
X	6739967	X_6739967_SNP [dm3] X_6845934_SNP [dm6]	G	A	3.133e^-4	1	SYNONYMOUS_CODING CG4557	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10623378	2L_10623378_SNP [dm3] 2L_10623378_SNP [dm6]	A	G	3.145e^-4	1	INTRON Trim9
X	7772358	X_7772358_SNP [dm3] X_7878325_SNP [dm6]	T	A	3.146e^-4	1	SYNONYMOUS_CODING Ir7d
2R	13007850	2R_13007850_SNP [dm3] 2R_17120345_SNP [dm6]	C	A	3.151e^-4	1	UPSTREAM CR45272 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14766481	3L_14766481_SNP [dm3] 3L_14773381_SNP [dm6]	G	A	3.152e^-4	1	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10221516	3R_10221516_SNP [dm3] 3R_14395794_SNP [dm6]	C	T	3.157e^-4	1	DOWNSTREAM mir-2281 INTRON cv-c	TF binding site mE1_TFBS_cad
2R	16423335	2R_16423335_SNP [dm3] 2R_20535830_SNP [dm6]	A	G	3.159e^-4	1	UTR_3_PRIME CG18067 UPSTREAM CG13423 DOWNSTREAM CG18067
2L	1619264	2L_1619264_SNP [dm3] 2L_1619264_SNP [dm6]	A	T	3.160e^-4	1	DOWNSTREAM CR44603 EXON CR44603
2R	15323797	2R_15323797_SNP [dm3] 2R_19436292_SNP [dm6]	C	A	3.169e^-4	1	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16035430	2R_16035430_SNP [dm3] 2R_20147925_SNP [dm6]	A	C	3.171e^-4	1	INTERGENIC
2R	7191440	2R_7191440_SNP [dm3] 2R_11303935_SNP [dm6]	C	G	3.199e^-4	1	SYNONYMOUS_CODING CG7741 UTR_5_PRIME CG7741 UPSTREAM Obp47b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7191443	2R_7191443_SNP [dm3] 2R_11303938_SNP [dm6]	C	T	3.199e^-4	1	SYNONYMOUS_CODING CG7741 UTR_5_PRIME CG7741 UPSTREAM Obp47b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16497671	3L_16497671_SNP [dm3] 3L_16504571_SNP [dm6]	G	T	3.205e^-4	1	INTRON CG43373
3L	19998318	3L_19998318_SNP [dm3] 3L_20005218_SNP [dm6]	C	T	3.206e^-4	1	UPSTREAM kug DOWNSTREAM CG7668 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	4443457	X_4443457_SNP [dm3] X_4549424_SNP [dm6]	C	T	3.209e^-4	1	SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16035323	2R_16035323_INS [dm3] 2R_20147818_INS [dm6]	T	TT	3.215e^-4	1	DOWNSTREAM CG11041 INTERGENIC
3L	12600802	3L_12600802_SNP [dm3] 3L_12607702_SNP [dm6]	G	A	3.219e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11938580	X_11938580_DEL [dm3] X_12044547_DEL [dm6]	ATGTT	A	3.222e^-4	1	INTRON CR43960 & 1 other
3R	21499798	3R_21499798_DEL [dm3] 3R_25674076_DEL [dm6]	TATAAACTTAATT...	T	3.231e^-4	1	INTRON Lgr3
3R	25967143	3R_25967143_SNP [dm3] 3R_30141421_SNP [dm6]	C	T	3.232e^-4	1	INTRON AdoR	TF binding site mE1_TFBS_chinmo
2L	4876855	2L_4876855_SNP [dm3] 2L_4876855_SNP [dm6]	T	A	3.234e^-4	1	DOWNSTREAM Cf2 & 1 other INTERGENIC
2R	7120198	2R_7120198_SNP [dm3] 2R_11232693_SNP [dm6]	T	C	3.234e^-4	1	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	6916361	3R_6916361_SNP [dm3] 3R_11090639_SNP [dm6]	C	T	3.234e^-4	1	INTERGENIC
2L	13124732	2L_13124732_SNP [dm3] 2L_13124732_SNP [dm6]	G	T	3.241e^-4	1	INTERGENIC
2L	4194534	2L_4194534_SNP [dm3] 2L_4194534_SNP [dm6]	G	A	3.250e^-4	1	INTRON CG3714
2L	9779207	2L_9779207_SNP [dm3] 2L_9779207_SNP [dm6]	C	A	3.255e^-4	1	INTERGENIC
2L	2140390	2L_2140390_SNP [dm3] 2L_2140390_SNP [dm6]	A	C	3.268e^-4	1	NON_SYNONYMOUS_CODING tho2	TF binding site mE1_TFBS_cad
3R	3692107	3R_3692107_SNP [dm3] 3R_7866385_SNP [dm6]	T	A	3.274e^-4	1	INTRON CG17816
X	11938516	X_11938516_DEL [dm3] X_12044483_DEL [dm6]	CGAGAAAC	C	3.279e^-4	1	INTRON CR43960 & 1 other
3R	13266051	3R_13266051_SNP [dm3] 3R_17440329_SNP [dm6]	G	T	3.282e^-4	1	NON_SYNONYMOUS_CODING CG14331 INTRON CG5873
2R	3232831	2R_3232831_SNP [dm3] 2R_7345326_SNP [dm6]	G	A	3.286e^-4	1	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2R	16035399	2R_16035399_SNP [dm3] 2R_20147894_SNP [dm6]	T	C	3.287e^-4	1	INTERGENIC
2L	10044439	2L_10044439_SNP [dm3] 2L_10044439_SNP [dm6]	G	A	3.287e^-4	1	INTERGENIC
X	12906144	X_12906144_DEL [dm3] X_13012111_DEL [dm6]	GTGTGTGTGTGTGTG...	G	3.288e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10044437	2L_10044437_SNP [dm3] 2L_10044437_SNP [dm6]	G	A	3.292e^-4	1	INTERGENIC
2L	10044445	2L_10044445_SNP [dm3] 2L_10044445_SNP [dm6]	G	A	3.292e^-4	1	INTERGENIC
3L	9295673	3L_9295673_SNP [dm3] 3L_9302573_SNP [dm6]	A	T	3.294e^-4	1	INTERGENIC
2R	16057946	2R_16057946_SNP [dm3] 2R_20170441_SNP [dm6]	T	G	3.299e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12919142	X_12919142_SNP [dm3] X_13025109_SNP [dm6]	C	A	3.317e^-4	1	INTRON rad
3L	16497725	3L_16497725_SNP [dm3] 3L_16504625_SNP [dm6]	A	C	3.321e^-4	1	INTRON CG43373
2L	4430305	2L_4430305_SNP [dm3] 2L_4430305_SNP [dm6]	G	C	3.321e^-4	1	INTRON CG15431
3L	1576642	3L_1576642_SNP [dm3] 3L_1576642_SNP [dm6]	T	C	3.326e^-4	1	UPSTREAM CG13917 DOWNSTREAM CG12004 INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	14043584	X_14043584_SNP [dm3] X_14149551_SNP [dm6]	C	G	3.330e^-4	1	INTERGENIC
X	7141552	X_7141552_SNP [dm3] X_7247519_SNP [dm6]	T	C	3.335e^-4	1	INTRON CR44357	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	11855317	3L_11855317_SNP [dm3] 3L_11862217_SNP [dm6]	T	G	3.338e^-4	1	INTRON CG44837	TF binding site mE1_TFBS_cad
X	17972581	X_17972581_SNP [dm3] X_18078548_SNP [dm6]	T	A	3.343e^-4	1	UTR_3_PRIME CG7536 DOWNSTREAM CG7536 & 1 other
X	1706240	X_1706240_SNP [dm3] X_1812207_SNP [dm6]	C	G	3.345e^-4	1	INTRON CG42666	TF binding site mE1_TFBS_HSA
2L	20827239	2L_20827239_SNP [dm3] 2L_20827239_SNP [dm6]	G	A	3.349e^-4	1	INTRON CG9331
X	14151645	X_14151645_SNP [dm3] X_14257612_SNP [dm6]	G	T	3.352e^-4	1	SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18344254	2R_18344254_SNP [dm3] 2R_22456749_SNP [dm6]	G	A	3.352e^-4	1	INTRON CG10384
2R	18009150	2R_18009150_INS [dm3] 2R_22121645_INS [dm6]	A	AGCACACA	3.357e^-4	1	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	19554911	3L_19554911_SNP [dm3] 3L_19561811_SNP [dm6]	T	C	3.362e^-4	1	UPSTREAM CR44676 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	7132928	2R_7132928_SNP [dm3] 2R_11245423_SNP [dm6]	A	G	3.374e^-4	1	UTR_5_PRIME CG34225 UPSTREAM CR30029 DOWNSTREAM CG13226
2L	17836816	2L_17836816_SNP [dm3] 2L_17836816_SNP [dm6]	A	C	3.377e^-4	1	INTRON CadN2
3R	21499796	3R_21499796_SNP [dm3] 3R_25674074_SNP [dm6]	G	A	3.377e^-4	1	INTRON Lgr3
X	6554140	X_6554140_SNP [dm3] X_6660107_SNP [dm6]	G	T	3.378e^-4	1	DOWNSTREAM CG3224 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11450065	2R_11450065_SNP [dm3] 2R_15562560_SNP [dm6]	T	A	3.396e^-4	1	DOWNSTREAM CG8195 & 1 other INTERGENIC
3R	27524320	3R_27524320_SNP [dm3] 3R_31698598_SNP [dm6]	G	C	3.412e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	1618906	2L_1618906_SNP [dm3] 2L_1618906_SNP [dm6]	A	C	3.415e^-4	1	DOWNSTREAM CR44603 EXON CR44603	TF binding site mE1_TFBS_chinmo
X	1679593	X_1679593_SNP [dm3] X_1785560_SNP [dm6]	T	C	3.440e^-4	1	UTR_3_PRIME Adar INTRON CG42666
3L	1236829	3L_1236829_SNP [dm3] 3L_1236829_SNP [dm6]	C	T	3.447e^-4	1	SPLICE_SITE_REGION CG9194 DOWNSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_chinmo
X	7771908	X_7771908_SNP [dm3] X_7877875_SNP [dm6]	G	T	3.447e^-4	1	SYNONYMOUS_CODING Ir7d
3R	21888663	3R_21888663_SNP [dm3] 3R_26062941_SNP [dm6]	T	G	3.449e^-4	1	UTR_5_PRIME CG14551 UPSTREAM CG14551
2L	2597444	2L_2597444_SNP [dm3] 2L_2597444_SNP [dm6]	C	G	3.462e^-4	1	INTERGENIC
2R	19192902	2R_19192902_SNP [dm3] 2R_23305379_SNP [dm6]	C	A	3.462e^-4	1	INTERGENIC
X	2590714	X_2590714_SNP [dm3] X_2696681_SNP [dm6]	G	A	3.463e^-4	1	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9694650	3L_9694650_SNP [dm3] 3L_9701550_SNP [dm6]	G	A	3.469e^-4	1	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad
2L	20826515	2L_20826515_SNP [dm3] 2L_20826515_SNP [dm6]	A	G	3.470e^-4	1	INTRON CG9331	TF binding site mE1_TFBS_bab1
2L	12155983	2L_12155983_SNP [dm3] 2L_12155983_SNP [dm6]	C	T	3.471e^-4	1	INTRON CG31760
2L	1659805	2L_1659805_SNP [dm3] 2L_1659805_SNP [dm6]	T	A	3.472e^-4	1	INTRON chinmo
X	9667751	X_9667751_SNP [dm3] X_9773718_SNP [dm6]	T	A	3.472e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6438572	2R_6438572_SNP [dm3] 2R_10551067_SNP [dm6]	T	A	3.473e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15004303	3R_15004303_DEL [dm3] 3R_19178581_DEL [dm6]	TGGTTA	C	3.481e^-4	1	DOWNSTREAM CG14282 INTRON CG5555
3R	15004314	3R_15004314_SNP [dm3] 3R_19178592_SNP [dm6]	G	C	3.481e^-4	1	DOWNSTREAM CG14282 INTRON CG5555	TF binding site mE1_TFBS_sens
2R	11732741	2R_11732741_SNP [dm3] 2R_15845236_SNP [dm6]	G	A	3.484e^-4	1	INTRON tun & 1 other	TF binding site mE1_TFBS_HSA
X	17908477	X_17908477_INS [dm3] X_18014444_INS [dm6]	T	TT	3.489e^-4	1	UTR_5_PRIME Sh INTRON Sh
2R	18292474	2R_18292474_SNP [dm3] 2R_22404969_SNP [dm6]	C	T	3.492e^-4	1	INTRON CG6044	TF binding site mE1_TFBS_Trl
2R	18292455	2R_18292455_SNP [dm3] 2R_22404950_SNP [dm6]	T	G	3.532e^-4	1	INTRON CG6044	TF binding site mE1_TFBS_Trl
2R	18292456	2R_18292456_SNP [dm3] 2R_22404951_SNP [dm6]	A	G	3.532e^-4	1	INTRON CG6044	TF binding site mE1_TFBS_Trl
3L	17684915	3L_17684915_SNP [dm3] 3L_17691815_SNP [dm6]	A	G	3.536e^-4	1	INTRON Ccn
2L	8206532	2L_8206532_SNP [dm3] 2L_8206532_SNP [dm6]	A	G	3.542e^-4	1	NON_SYNONYMOUS_CODING CG8419 UPSTREAM CR44120 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16366323	2R_16366323_SNP [dm3] 2R_20478818_SNP [dm6]	A	G	3.546e^-4	1	UTR_3_PRIME CG12484
3L	9965591	3L_9965591_SNP [dm3] 3L_9972491_SNP [dm6]	C	G	3.559e^-4	1	UPSTREAM vnc & 2 others INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10610468	2R_10610468_SNP [dm3] 2R_14722963_SNP [dm6]	T	G	3.575e^-4	1	INTERGENIC
2R	16642491	2R_16642491_DEL [dm3] 2R_20754986_DEL [dm6]	GTGGCAACCACCTCCCCTTT...	G	3.593e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7771911	X_7771911_SNP [dm3] X_7877878_SNP [dm6]	T	G	3.601e^-4	1	SYNONYMOUS_CODING Ir7d
3L	7425371	3L_7425371_SNP [dm3] 3L_7432271_SNP [dm6]	G	A	3.602e^-4	1	INTRON CG42458
X	9122437	X_9122437_SNP [dm3] X_9228404_SNP [dm6]	G	A	3.604e^-4	1	SPLICE_SITE_REGION Gr8a DOWNSTREAM CG12121 INTRON Gr8a
2L	8758032	2L_8758032_SNP [dm3] 2L_8758032_SNP [dm6]	T	G	3.616e^-4	1	INTERGENIC
3R	6414632	3R_6414632_SNP [dm3] 3R_10588910_SNP [dm6]	T	C	3.620e^-4	1	INTRON hth
2R	18311342	2R_18311342_SNP [dm3] 2R_22423837_SNP [dm6]	C	T	3.623e^-4	1	NON_SYNONYMOUS_CODING rad50
X	4739688	X_4739688_SNP [dm3] X_4845655_SNP [dm6]	G	C	3.624e^-4	1	INTRON CG42594
X	10855825	X_10855825_SNP [dm3] X_10961792_SNP [dm6]	G	A	3.624e^-4	1	INTRON Myo10A
3L	11301485	3L_11301485_SNP [dm3] 3L_11308385_SNP [dm6]	T	C	3.628e^-4	1	INTERGENIC
2R	9730533	2R_9730533_SNP [dm3] 2R_13843028_SNP [dm6]	G	A	3.633e^-4	1	UTR_3_PRIME Syngr
2L	2898833	2L_2898833_SNP [dm3] 2L_2898833_SNP [dm6]	A	G	3.637e^-4	1	INTRON lilli	TF binding site BDTNP1_TFBS_dl
3L	18130381	3L_18130381_SNP [dm3] 3L_18137281_SNP [dm6]	A	G	3.651e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	3.655e^-4	1	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
X	8063636	X_8063636_SNP [dm3] X_8169603_SNP [dm6]	T	C	3.671e^-4	1	SYNONYMOUS_CODING CG2278 DOWNSTREAM slpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21189208	X_21189208_SNP [dm3] X_21318181_SNP [dm6]	G	C	3.676e^-4	1	NON_SYNONYMOUS_CODING CG33713 UTR_3_PRIME CG33714 UPSTREAM CG1801 DOWNSTREAM Rpt6	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10212671	2R_10212671_SNP [dm3] 2R_14325166_SNP [dm6]	A	G	3.679e^-4	1	INTRON Shroom
3L	12490607	3L_12490607_SNP [dm3] 3L_12497507_SNP [dm6]	A	G	3.690e^-4	1	UPSTREAM CG10657 & 1 other DOWNSTREAM CG10638 INTERGENIC
2R	17967308	2R_17967308_SNP [dm3] 2R_22079803_SNP [dm6]	G	A	3.694e^-4	1	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13329966	X_13329966_SNP [dm3] X_13435933_SNP [dm6]	C	T	3.700e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18618885	X_18618885_SNP [dm3] X_18724852_SNP [dm6]	A	T	3.702e^-4	1	DOWNSTREAM CG42302 INTRON CCKLR-17D1
3L	2298645	3L_2298645_SNP [dm3] 3L_2298645_SNP [dm6]	G	T	3.718e^-4	1	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20826616	2L_20826616_SNP [dm3] 2L_20826616_SNP [dm6]	C	A	3.725e^-4	1	INTRON CG9331
X	3110859	X_3110859_SNP [dm3] X_3216826_SNP [dm6]	G	A	3.726e^-4	1	INTRON dnc
2R	19864172	2R_19864172_SNP [dm3] 2R_23976649_SNP [dm6]	A	G	3.727e^-4	1	SYNONYMOUS_CODING Gadd34	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9121177	X_9121177_SNP [dm3] X_9227144_SNP [dm6]	C	T	3.731e^-4	1	UTR_5_PRIME Gr8a DOWNSTREAM CG15370
2R	14713976	2R_14713976_SNP [dm3] 2R_18826471_SNP [dm6]	G	C	3.732e^-4	1	UPSTREAM CG15097 INTRON CG15097
3R	6770894	3R_6770894_SNP [dm3] 3R_10945172_SNP [dm6]	G	C	3.738e^-4	1	INTERGENIC
X	9121191	X_9121191_SNP [dm3] X_9227158_SNP [dm6]	C	T	3.740e^-4	1	UTR_5_PRIME Gr8a DOWNSTREAM CG15370
2L	18790819	2L_18790819_SNP [dm3] 2L_18790819_SNP [dm6]	C	T	3.744e^-4	1	INTRON ham	TF binding site mE1_TFBS_cad
3L	12514162	3L_12514162_SNP [dm3] 3L_12521062_SNP [dm6]	T	C	3.752e^-4	1	DOWNSTREAM Gcn5 & 1 other INTERGENIC
2L	16721728	2L_16721728_SNP [dm3] 2L_16721728_SNP [dm6]	C	T	3.767e^-4	1	UPSTREAM Cyt-c-p INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_dl
2L	5718761	2L_5718761_SNP [dm3] 2L_5718761_SNP [dm6]	T	C	3.773e^-4	1	SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011
3L	19564594	3L_19564594_SNP [dm3] 3L_19571494_SNP [dm6]	A	C	3.778e^-4	1	DOWNSTREAM Shal INTRON Shal
2R	7132900	2R_7132900_SNP [dm3] 2R_11245395_SNP [dm6]	G	A	3.786e^-4	1	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3L	7931338	3L_7931338_SNP [dm3] 3L_7938238_SNP [dm6]	A	T	3.787e^-4	1	DOWNSTREAM Srp9 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3786924	3L_3786924_SNP [dm3] 3L_3786924_SNP [dm6]	G	A	3.796e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17815871	2L_17815871_SNP [dm3] 2L_17815871_SNP [dm6]	T	C	3.800e^-4	1	INTRON CadN2
3R	15004294	3R_15004294_SNP [dm3] 3R_19178572_SNP [dm6]	G	A	3.817e^-4	1	DOWNSTREAM CG14282 INTRON CG5555
2R	7132772	2R_7132772_SNP [dm3] 2R_11245267_SNP [dm6]	C	T	3.823e^-4	1	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3L	18159432	3L_18159432_SNP [dm3] 3L_18166332_SNP [dm6]	A	G	3.824e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20813112	2L_20813112_SNP [dm3] 2L_20813112_SNP [dm6]	A	G	3.826e^-4	1	INTRON CG9328
X	16364607	X_16364607_SNP [dm3] X_16470574_SNP [dm6]	G	A	3.844e^-4	1	INTRON para
2L	3509697	2L_3509697_SNP [dm3] 2L_3509697_SNP [dm6]	T	G	3.853e^-4	1	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
2R	14620491	2R_14620491_SNP [dm3] 2R_18732986_SNP [dm6]	T	C	3.867e^-4	1	INTRON Hs3st-A
2R	17967346	2R_17967346_SNP [dm3] 2R_22079841_SNP [dm6]	G	T	3.875e^-4	1	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8856348	2L_8856348_SNP [dm3] 2L_8856348_SNP [dm6]	G	A	3.890e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13430046	3R_13430046_SNP [dm3] 3R_17604324_SNP [dm6]	A	G	3.891e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	8743608	2L_8743608_SNP [dm3] 2L_8743608_SNP [dm6]	A	G	3.894e^-4	1	INTERGENIC
2R	10549595	2R_10549595_DEL [dm3] 2R_14662090_DEL [dm6]	TT	T	3.894e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6892580	2R_6892580_SNP [dm3] 2R_11005075_SNP [dm6]	T	A	3.894e^-4	1	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18292526	2R_18292526_SNP [dm3] 2R_22405021_SNP [dm6]	C	T	3.900e^-4	1	INTRON CG6044	TF binding site mE1_TFBS_Trl
2L	6049528	2L_6049528_SNP [dm3] 2L_6049528_SNP [dm6]	G	A	3.904e^-4	1	NON_SYNONYMOUS_CODING CG12393 UPSTREAM CG34179 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4876771	2L_4876771_SNP [dm3] 2L_4876771_SNP [dm6]	C	G	3.907e^-4	1	UTR_3_PRIME pog DOWNSTREAM Cf2
3L	18078535	3L_18078535_SNP [dm3] 3L_18085435_SNP [dm6]	G	T	3.926e^-4	1	UPSTREAM CR43253 EXON CR32194
2R	19646999	2R_19646999_SNP [dm3] 2R_23759476_SNP [dm6]	G	A	3.930e^-4	1	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	1681038	X_1681038_DEL [dm3] X_1787005_DEL [dm6]	GA	T	3.935e^-4	1	UTR_3_PRIME Adar INTRON CG42666
2L	5751758	2L_5751758_SNP [dm3] 2L_5751758_SNP [dm6]	A	C	3.957e^-4	1	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7799077	3L_7799077_SNP [dm3] 3L_7805977_SNP [dm6]	T	A	3.985e^-4	1	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	10570491	3L_10570491_SNP [dm3] 3L_10577391_SNP [dm6]	T	A	3.992e^-4	1	INTRON A2bp1
X	18619132	X_18619132_SNP [dm3] X_18725099_SNP [dm6]	G	A	3.994e^-4	1	UTR_3_PRIME CG42302 INTRON CCKLR-17D1
3R	25317146	3R_25317146_SNP [dm3] 3R_29491424_SNP [dm6]	G	T	4.006e^-4	1	UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15002524	3R_15002524_SNP [dm3] 3R_19176802_SNP [dm6]	C	A	4.007e^-4	1	UPSTREAM CG14282 INTERGENIC
2L	16875336	2L_16875336_SNP [dm3] 2L_16875336_SNP [dm6]	T	C	4.014e^-4	1	INTRON CR31781
2R	6358571	2R_6358571_SNP [dm3] 2R_10471066_SNP [dm6]	T	C	4.015e^-4	1	INTRON whd
3R	21928795	3R_21928795_SNP [dm3] 3R_26103073_SNP [dm6]	T	A	4.019e^-4	1	INTERGENIC
3L	10456423	3L_10456423_SNP [dm3] 3L_10463323_SNP [dm6]	A	G	4.026e^-4	1	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11671805	3R_11671805_SNP [dm3] 3R_15846083_SNP [dm6]	G	A	4.029e^-4	1	UPSTREAM CG4546 INTRON cv-d
2R	7105240	2R_7105240_SNP [dm3] 2R_11217735_SNP [dm6]	T	A	4.033e^-4	1	DOWNSTREAM shn INTRON CG9084
X	4445268	X_4445268_SNP [dm3] X_4551235_SNP [dm6]	C	T	4.036e^-4	1	SYNONYMOUS_CODING CG11436 UPSTREAM CG3527 INTRON CR32773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9295589	3L_9295589_DEL [dm3] 3L_9302489_DEL [dm6]	AAGCATACATA...	A	4.069e^-4	1	INTERGENIC
3L	9295608	3L_9295608_SNP [dm3] 3L_9302508_SNP [dm6]	A	T	4.069e^-4	1	INTERGENIC
2R	16922561	2R_16922561_SNP [dm3] 2R_21035056_SNP [dm6]	C	T	4.076e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4187675	2L_4187675_SNP [dm3] 2L_4187675_SNP [dm6]	A	C	4.076e^-4	1	START_GAINED CG31961 UTR_5_PRIME CG31961 UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6087008	X_6087008_SNP [dm3] X_6192975_SNP [dm6]	A	G	4.094e^-4	1	UPSTREAM Ca-alpha1T INTERGENIC
3L	9295578	3L_9295578_SNP [dm3] 3L_9302478_SNP [dm6]	G	T	4.097e^-4	1	INTERGENIC
3L	9295579	3L_9295579_SNP [dm3] 3L_9302479_SNP [dm6]	A	T	4.097e^-4	1	INTERGENIC
2R	10521307	2R_10521307_SNP [dm3] 2R_14633802_SNP [dm6]	C	A	4.102e^-4	1	INTERGENIC
3L	9295583	3L_9295583_SNP [dm3] 3L_9302483_SNP [dm6]	A	G	4.103e^-4	1	INTERGENIC
X	9199927	X_9199927_SNP [dm3] X_9305894_SNP [dm6]	A	G	4.127e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9295553	3L_9295553_SNP [dm3] 3L_9302453_SNP [dm6]	A	T	4.131e^-4	1	INTERGENIC
2R	9257454	2R_9257454_SNP [dm3] 2R_13369949_SNP [dm6]	G	A	4.134e^-4	1	INTERGENIC
3L	19552967	3L_19552967_SNP [dm3] 3L_19559867_SNP [dm6]	C	G	4.144e^-4	1	DOWNSTREAM CR44676 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	6114780	3L_6114780_SNP [dm3] 3L_6121680_SNP [dm6]	T	C	4.147e^-4	1	SYNONYMOUS_CODING Ets65A
X	18193855	X_18193855_SNP [dm3] X_18299822_SNP [dm6]	A	G	4.147e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr
3R	4530201	3R_4530201_SNP [dm3] 3R_8704479_SNP [dm6]	A	C	4.156e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	10281133	2L_10281133_SNP [dm3] 2L_10281133_SNP [dm6]	T	C	4.159e^-4	1	UPSTREAM CG34043 DOWNSTREAM CG5604 INTERGENIC
X	19891335	X_19891335_DEL [dm3] X_19997302_DEL [dm6]	GG	G	4.168e^-4	1	INTERGENIC
2R	16757358	2R_16757358_SNP [dm3] 2R_20869853_SNP [dm6]	T	C	4.174e^-4	1	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10741695	3L_10741695_SNP [dm3] 3L_10748595_SNP [dm6]	G	A	4.186e^-4	1	INTERGENIC
2L	7351461	2L_7351461_SNP [dm3] 2L_7351461_SNP [dm6]	A	G	4.186e^-4	1	NON_SYNONYMOUS_CODING Wnt6	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	1591246	X_1591246_SNP [dm3] X_1697213_SNP [dm6]	C	T	4.187e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2241039	X_2241039_SNP [dm3] X_2347006_SNP [dm6]	C	T	4.191e^-4	1	NON_SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_sens
2R	7126912	2R_7126912_SNP [dm3] 2R_11239407_SNP [dm6]	T	G	4.193e^-4	1	UPSTREAM CG13216 DOWNSTREAM CG13215 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8634792	2L_8634792_SNP [dm3] 2L_8634792_SNP [dm6]	G	A	4.193e^-4	1	INTRON Sema-1a
2R	15756549	2R_15756549_INS [dm3] 2R_19869044_INS [dm6]	T	TTT	4.197e^-4	1	DOWNSTREAM Obp56i EXON CR44460
X	1587562	X_1587562_SNP [dm3] X_1693529_SNP [dm6]	G	A	4.211e^-4	1	SYNONYMOUS_CODING CG14798 UPSTREAM CG32809 DOWNSTREAM a6
2R	3479871	2R_3479871_SNP [dm3] 2R_7592366_SNP [dm6]	T	C	4.218e^-4	1	SYNONYMOUS_CODING scra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21188907	X_21188907_SNP [dm3] X_21317880_SNP [dm6]	T	A	4.231e^-4	1	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_jumu
3L	16497792	3L_16497792_SNP [dm3] 3L_16504692_SNP [dm6]	C	A	4.237e^-4	1	INTRON CG43373
3L	2951295	3L_2951295_SNP [dm3] 3L_2951295_SNP [dm6]	T	C	4.240e^-4	1	SYNONYMOUS_CODING CG32846 INTRON Shab
X	2216142	X_2216142_SNP [dm3] X_2322109_SNP [dm6]	A	G	4.251e^-4	1	INTRON phl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1591142	X_1591142_SNP [dm3] X_1697109_SNP [dm6]	G	A	4.253e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5755374	2L_5755374_SNP [dm3] 2L_5755374_SNP [dm6]	T	A	4.258e^-4	1	INTRON CG11030
2R	10586303	2R_10586303_SNP [dm3] 2R_14698798_SNP [dm6]	A	T	4.266e^-4	1	INTRON mspo
X	19447686	X_19447686_SNP [dm3] X_19553653_SNP [dm6]	T	A	4.297e^-4	1	INTERGENIC
X	19861264	X_19861264_SNP [dm3] X_19967231_SNP [dm6]	T	C	4.299e^-4	1	SPLICE_SITE_REGION Nep3 INTRON Nep3
X	8358295	X_8358295_SNP [dm3] X_8464262_SNP [dm6]	T	G	4.302e^-4	1	SYNONYMOUS_CODING Sptr DOWNSTREAM Es2
2R	13682567	2R_13682567_SNP [dm3] 2R_17795062_SNP [dm6]	C	A	4.302e^-4	1	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	997840	X_997840_SNP [dm3] X_1103807_SNP [dm6]	A	G	4.304e^-4	1	INTRON CG3655
3L	6577215	3L_6577215_SNP [dm3] 3L_6584115_SNP [dm6]	G	C	4.306e^-4	1	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
X	3155161	X_3155161_SNP [dm3] X_3261128_SNP [dm6]	G	A	4.315e^-4	1	INTRON dnc
3R	16649213	3R_16649213_SNP [dm3] 3R_20823491_SNP [dm6]	T	C	4.318e^-4	1	SYNONYMOUS_CODING CG17272 DOWNSTREAM snoRNA:Psi18S-1295 & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21188015	X_21188015_SNP [dm3] X_21316988_SNP [dm6]	C	A	4.325e^-4	1	SYNONYMOUS_CODING Rpt6 DOWNSTREAM CG33713 & 1 other INTRON CG1801	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21188715	X_21188715_SNP [dm3] X_21317688_SNP [dm6]	T	A	4.350e^-4	1	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_jumu
X	2411133	X_2411133_SNP [dm3] X_2517100_SNP [dm6]	C	T	4.354e^-4	1	INTRON trol
X	19240436	X_19240436_SNP [dm3] X_19346403_SNP [dm6]	T	G	4.357e^-4	1	INTRON nAChRalpha7
2L	9767929	2L_9767929_SNP [dm3] 2L_9767929_SNP [dm6]	G	A	4.362e^-4	1	SYNONYMOUS_CODING CG4017 INTRON ppk18
2R	18003383	2R_18003383_SNP [dm3] 2R_22115878_SNP [dm6]	A	G	4.366e^-4	1	INTRON Vrp1 & 1 other
3L	12610139	3L_12610139_SNP [dm3] 3L_12617039_SNP [dm6]	T	C	4.375e^-4	1	SYNONYMOUS_CODING caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13972477	3R_13972477_SNP [dm3] 3R_18146755_SNP [dm6]	A	G	4.380e^-4	1	INTERGENIC
3L	16580561	3L_16580561_SNP [dm3] 3L_16587461_SNP [dm6]	C	T	4.381e^-4	1	SYNONYMOUS_CODING CG32163 UPSTREAM Syx8 INTRON CG32163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	1648391	X_1648391_SNP [dm3] X_1754358_SNP [dm6]	T	C	4.391e^-4	1	UPSTREAM Scgdelta INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	1582967	X_1582967_SNP [dm3] X_1688934_SNP [dm6]	G	A	4.399e^-4	1	SYNONYMOUS_CODING b6 UPSTREAM CG32809 INTRON CG32809	TF binding site mE1_TFBS_chinmo
X	1592466	X_1592466_SNP [dm3] X_1698433_SNP [dm6]	G	C	4.399e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17968066	2R_17968066_SNP [dm3] 2R_22080561_SNP [dm6]	C	G	4.405e^-4	1	UPSTREAM Synj INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11672847	3R_11672847_SNP [dm3] 3R_15847125_SNP [dm6]	T	C	4.406e^-4	1	INTRON cv-d & 1 other	TF binding site mE1_TFBS_cad
3L	12721992	3L_12721992_SNP [dm3] 3L_12728892_SNP [dm6]	C	T	4.411e^-4	1	INTERGENIC
2R	14414745	2R_14414745_SNP [dm3] 2R_18527240_SNP [dm6]	G	C	4.421e^-4	1	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7064971	2R_7064971_SNP [dm3] 2R_11177466_SNP [dm6]	C	T	4.430e^-4	1	INTRON shn
2L	4165521	2L_4165521_SNP [dm3] 2L_4165521_SNP [dm6]	A	G	4.431e^-4	1	NON_SYNONYMOUS_CODING Or24a
3R	10190495	3R_10190495_SNP [dm3] 3R_14364773_SNP [dm6]	A	G	4.443e^-4	1	INTRON NK7.1
2R	16757368	2R_16757368_SNP [dm3] 2R_20869863_SNP [dm6]	G	A	4.455e^-4	1	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4317924	2R_4317924_SNP [dm3] 2R_8430419_SNP [dm6]	T	C	4.464e^-4	1	UTR_3_PRIME Lcp1 DOWNSTREAM Lcp1
3L	15634188	3L_15634188_SNP [dm3] 3L_15641088_SNP [dm6]	T	A	4.480e^-4	1	INTRON comm3
3R	9920700	3R_9920700_SNP [dm3] 3R_14094978_SNP [dm6]	A	T	4.494e^-4	1	INTRON CCHa1
2R	9034898	2R_9034898_SNP [dm3] 2R_13147393_SNP [dm6]	A	G	4.495e^-4	1	SYNONYMOUS_CODING Ack-like INTRON Ack-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21189463	X_21189463_SNP [dm3] X_21318436_SNP [dm6]	G	A	4.498e^-4	1	SYNONYMOUS_CODING CG33713 UTR_3_PRIME CG33714 UPSTREAM CG1801 DOWNSTREAM Rpt6	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8970913	2R_8970913_SNP [dm3] 2R_13083408_SNP [dm6]	C	T	4.514e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7235027	2L_7235027_SNP [dm3] 2L_7235027_SNP [dm6]	C	A	4.514e^-4	1	INTRON Ndae1
2L	7235100	2L_7235100_SNP [dm3] 2L_7235100_SNP [dm6]	A	G	4.514e^-4	1	INTRON Ndae1
3L	17363427	3L_17363427_SNP [dm3] 3L_17370327_SNP [dm6]	A	G	4.516e^-4	1	SYNONYMOUS_CODING Cad74A
X	19891333	X_19891333_SNP [dm3] X_19997300_SNP [dm6]	C	T	4.519e^-4	1	INTERGENIC
2L	7026704	2L_7026704_SNP [dm3] 2L_7026704_SNP [dm6]	A	G	4.530e^-4	1	UPSTREAM CG3476 INTRON CG31908	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10377763	3L_10377763_SNP [dm3] 3L_10384663_SNP [dm6]	C	T	4.552e^-4	1	INTERGENIC
X	12182349	X_12182349_SNP [dm3] X_12288316_SNP [dm6]	A	G	4.568e^-4	1	INTRON Ten-a
X	18619109	X_18619109_SNP [dm3] X_18725076_SNP [dm6]	G	A	4.570e^-4	1	UTR_3_PRIME CG42302 INTRON CCKLR-17D1
3R	22772639	3R_22772639_SNP [dm3] 3R_26946917_SNP [dm6]	G	A	4.573e^-4	1	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other	TF binding site mE1_TFBS_sens
3R	15476919	3R_15476919_SNP [dm3] 3R_19651197_SNP [dm6]	T	A	4.577e^-4	1	UTR_5_PRIME CG31219 DOWNSTREAM CG31220 INTRON CG31219
2L	7227380	2L_7227380_SNP [dm3] 2L_7227380_SNP [dm6]	T	C	4.596e^-4	1	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_inv
3R	16934365	3R_16934365_SNP [dm3] 3R_21108643_SNP [dm6]	G	T	4.600e^-4	1	NON_SYNONYMOUS_CODING rtet UPSTREAM Sec15	TF binding site mE1_TFBS_sens
3R	6000793	3R_6000793_SNP [dm3] 3R_10175071_SNP [dm6]	G	T	4.610e^-4	1	INTRON CG12814
X	10155201	X_10155201_INS [dm3] X_10261168_INS [dm6]	A	AA	4.610e^-4	1	INTRON Hk EXON CR43959
3R	11922172	3R_11922172_SNP [dm3] 3R_16096450_SNP [dm6]	A	G	4.612e^-4	1	SYNONYMOUS_CODING Mhcl
3L	3607115	3L_3607115_SNP [dm3] 3L_3607115_SNP [dm6]	T	C	4.617e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8316132	2L_8316132_SNP [dm3] 2L_8316132_SNP [dm6]	C	T	4.617e^-4	1	SPLICE_SITE_REGION CG7806 DOWNSTREAM mtsh INTRON CG7806
2L	20592948	2L_20592948_DEL [dm3] 2L_20592948_DEL [dm6]	AA	G	4.618e^-4	1	INTRON CR44909
2L	7148998	2L_7148998_SNP [dm3] 2L_7148998_SNP [dm6]	C	G	4.627e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24306994	3R_24306994_SNP [dm3] 3R_28481272_SNP [dm6]	A	G	4.627e^-4	1	INTERGENIC
3R	22057701	3R_22057701_SNP [dm3] 3R_26231979_SNP [dm6]	A	G	4.634e^-4	1	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19054243	X_19054243_INS [dm3] X_19160210_INS [dm6]	T	TGAAATAATTTATTACATCT...	4.635e^-4	1	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10056662	3R_10056662_SNP [dm3] 3R_14230940_SNP [dm6]	A	G	4.637e^-4	1	INTERGENIC
2L	1464093	2L_1464093_SNP [dm3] 2L_1464093_SNP [dm6]	C	T	4.647e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	15023703	2L_15023703_SNP [dm3] 2L_15023703_SNP [dm6]	A	G	4.656e^-4	1	INTRON GABA-B-R1
2R	18667964	2R_18667964_DEL [dm3] 2R_22780459_DEL [dm6]	TGCAC	T	4.659e^-4	1	INTRON CG42260
3R	23393893	3R_23393893_SNP [dm3] 3R_27568171_SNP [dm6]	G	A	4.662e^-4	1	UTR_5_PRIME wdb	TF binding site mE1_TFBS_HSA
2R	9898777	2R_9898777_SNP [dm3] 2R_14011272_SNP [dm6]	A	T	4.678e^-4	1	INTRON mam
3R	25031445	3R_25031445_SNP [dm3] 3R_29205723_SNP [dm6]	C	T	4.699e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16710863	3R_16710863_INS [dm3] 3R_20885141_INS [dm6]	A	AA	4.706e^-4	1	INTERGENIC
X	19491323	X_19491323_SNP [dm3] X_19597290_SNP [dm6]	C	T	4.706e^-4	1	UPSTREAM RpS10b INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22171288	3L_22171288_DEL [dm3] 3L_22178188_DEL [dm6]	AT	A	4.712e^-4	1	INTRON olf413	TF binding site mE1_TFBS_sens
X	20593858	X_20593858_SNP [dm3] X_20722831_SNP [dm6]	C	T	4.719e^-4	1	INTERGENIC
X	9667723	X_9667723_SNP [dm3] X_9773690_SNP [dm6]	T	G	4.732e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16931267	3R_16931267_SNP [dm3] 3R_21105545_SNP [dm6]	A	G	4.733e^-4	1	SYNONYMOUS_CODING Sec15 DOWNSTREAM CG5745	TF binding site mE1_TFBS_cad
2R	13734942	2R_13734942_SNP [dm3] 2R_17847437_SNP [dm6]	A	G	4.741e^-4	1	SYNONYMOUS_CODING olf186-M INTRON olf186-F
X	1702402	X_1702402_DEL [dm3] X_1808369_DEL [dm6]	TCCTGCT	T	4.745e^-4	1	INTRON CG42666	TF binding site mE1_TFBS_chinmo
2L	3791264	2L_3791264_SNP [dm3] 2L_3791264_SNP [dm6]	T	C	4.751e^-4	1	INTRON CG3921
2L	4129750	2L_4129750_SNP [dm3] 2L_4129750_SNP [dm6]	G	C	4.752e^-4	1	INTERGENIC
2R	17820101	2R_17820101_SNP [dm3] 2R_21932596_SNP [dm6]	T	G	4.754e^-4	1	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5858682	2L_5858682_SNP [dm3] 2L_5858682_SNP [dm6]	G	T	4.755e^-4	1	INTERGENIC
X	19054252	X_19054252_SNP [dm3] X_19160219_SNP [dm6]	G	A	4.764e^-4	1	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2330347	3L_2330347_SNP [dm3] 3L_2330347_SNP [dm6]	G	A	4.766e^-4	1	INTRON MsR1
2L	4429815	2L_4429815_SNP [dm3] 2L_4429815_SNP [dm6]	C	T	4.773e^-4	1	INTRON CG15431
2L	4187929	2L_4187929_SNP [dm3] 2L_4187929_SNP [dm6]	C	T	4.773e^-4	1	UPSTREAM lectin-24Db & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14516704	2L_14516704_SNP [dm3] 2L_14516704_SNP [dm6]	T	A	4.777e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21946998	3R_21946998_SNP [dm3] 3R_26121276_SNP [dm6]	C	T	4.784e^-4	1	INTRON CG31324
2L	11322363	2L_11322363_SNP [dm3] 2L_11322363_SNP [dm6]	C	A	4.790e^-4	1	INTERGENIC
3L	11086121	3L_11086121_SNP [dm3] 3L_11093021_SNP [dm6]	G	T	4.792e^-4	1	UTR_5_PRIME JIL-1 DOWNSTREAM CG6279	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	638264	2L_638264_SNP [dm3] 2L_638264_SNP [dm6]	A	G	4.793e^-4	1	INTERGENIC
2R	13682425	2R_13682425_SNP [dm3] 2R_17794920_SNP [dm6]	A	G	4.794e^-4	1	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	7200421	2R_7200421_SNP [dm3] 2R_11312916_SNP [dm6]	T	C	4.801e^-4	1	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
3R	22130382	3R_22130382_SNP [dm3] 3R_26304660_SNP [dm6]	T	C	4.813e^-4	1	INTERGENIC
3L	1576599	3L_1576599_SNP [dm3] 3L_1576599_SNP [dm6]	C	T	4.818e^-4	1	UPSTREAM CG13917 DOWNSTREAM CG12004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	16497741	3L_16497741_SNP [dm3] 3L_16504641_SNP [dm6]	A	G	4.826e^-4	1	INTRON CG43373
2L	5858684	2L_5858684_SNP [dm3] 2L_5858684_SNP [dm6]	A	G	4.838e^-4	1	INTERGENIC
X	4007640	X_4007640_SNP [dm3] X_4113607_SNP [dm6]	G	A	4.852e^-4	1	UTR_5_PRIME Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20829702	2L_20829702_SNP [dm3] 2L_20829702_SNP [dm6]	G	A	4.879e^-4	1	SYNONYMOUS_CODING CG31673	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	5858667	2L_5858667_DEL [dm3] 2L_5858667_DEL [dm6]	TT	T	4.889e^-4	1	INTERGENIC
2R	10626643	2R_10626643_SNP [dm3] 2R_14739138_SNP [dm6]	G	T	4.920e^-4	1	DOWNSTREAM CG12858 EXON CR43428
3L	5729492	3L_5729492_SNP [dm3] 3L_5736392_SNP [dm6]	G	A	4.921e^-4	1	INTRON sif
2L	18431678	2L_18431678_SNP [dm3] 2L_18431678_SNP [dm6]	C	A	4.931e^-4	1	INTERGENIC
2R	3773119	2R_3773119_SNP [dm3] 2R_7885614_SNP [dm6]	C	T	4.933e^-4	1	UTR_5_PRIME Dgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9555066	2L_9555066_SNP [dm3] 2L_9555066_SNP [dm6]	G	A	4.934e^-4	1	INTRON jp
3L	4995390	3L_4995390_SNP [dm3] 3L_4995390_SNP [dm6]	G	C	4.942e^-4	1	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3R	6415872	3R_6415872_SNP [dm3] 3R_10590150_SNP [dm6]	C	T	4.944e^-4	1	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8316129	2L_8316129_SNP [dm3] 2L_8316129_SNP [dm6]	G	C	4.949e^-4	1	SPLICE_SITE_REGION CG7806 DOWNSTREAM mtsh INTRON CG7806
3R	15476911	3R_15476911_SNP [dm3] 3R_19651189_SNP [dm6]	T	C	4.955e^-4	1	UTR_5_PRIME CG31219 DOWNSTREAM CG31220 INTRON CG31219
2R	3232892	2R_3232892_SNP [dm3] 2R_7345387_SNP [dm6]	T	G	4.972e^-4	1	INTRON Dscam1
2L	9126723	2L_9126723_DEL [dm3] 2L_9126723_DEL [dm6]	TAG	T	4.972e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	7132895	2R_7132895_SNP [dm3] 2R_11245390_SNP [dm6]	C	T	4.973e^-4	1	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
2L	6542255	2L_6542255_SNP [dm3] 2L_6542255_SNP [dm6]	G	A	4.988e^-4	1	INTRON eya	TF binding site mE1_TFBS_Kr
2R	14783715	2R_14783715_SNP [dm3] 2R_18896210_SNP [dm6]	C	T	4.999e^-4	1	INTRON sano
2R	7525693	2R_7525693_SNP [dm3] 2R_11638188_SNP [dm6]	A	C	5.000e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22741109	3R_22741109_SNP [dm3] 3R_26915387_SNP [dm6]	G	T	5.000e^-4	1	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	638334	2L_638334_SNP [dm3] 2L_638334_SNP [dm6]	T	C	5.019e^-4	1	INTERGENIC
2R	9750977	2R_9750977_SNP [dm3] 2R_13863472_SNP [dm6]	G	A	5.029e^-4	1	UTR_3_PRIME CG13344 DOWNSTREAM shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6319687	2R_6319687_SNP [dm3] 2R_10432182_SNP [dm6]	T	A	5.040e^-4	1	INTRON RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3401959	2L_3401959_SNP [dm3] 2L_3401959_SNP [dm6]	G	T	5.048e^-4	1	INTERGENIC
3L	14887235	3L_14887235_SNP [dm3] 3L_14894135_SNP [dm6]	A	C	5.052e^-4	1	SYNONYMOUS_CODING CG34245
3L	1855625	3L_1855625_SNP [dm3] 3L_1855625_SNP [dm6]	A	G	5.053e^-4	1	UPSTREAM CG13936 INTERGENIC
2L	5576411	2L_5576411_SNP [dm3] 2L_5576411_SNP [dm6]	A	G	5.057e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7788189	2R_7788189_SNP [dm3] 2R_11900684_SNP [dm6]	C	T	5.058e^-4	1	SYNONYMOUS_CODING Zip48C INTRON MCPH1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	20228710	2L_20228710_SNP [dm3] 2L_20228710_SNP [dm6]	C	T	5.072e^-4	1	INTERGENIC
X	10855428	X_10855428_SNP [dm3] X_10961395_SNP [dm6]	T	C	5.076e^-4	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	1208739	2L_1208739_SNP [dm3] 2L_1208739_SNP [dm6]	A	T	5.077e^-4	1	INTERGENIC
X	10156691	X_10156691_SNP [dm3] X_10262658_SNP [dm6]	T	G	5.079e^-4	1	DOWNSTREAM CR43959 INTRON Hk
2R	13154771	2R_13154771_SNP [dm3] 2R_17267266_SNP [dm6]	T	G	5.079e^-4	1	INTRON mbl
2R	15479544	2R_15479544_SNP [dm3] 2R_19592039_SNP [dm6]	G	T	5.087e^-4	1	INTRON sm
3L	7976305	3L_7976305_SNP [dm3] 3L_7983205_SNP [dm6]	G	A	5.090e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2500875	2L_2500875_SNP [dm3] 2L_2500875_SNP [dm6]	T	A	5.101e^-4	1	INTERGENIC
2L	8324561	2L_8324561_DEL [dm3] 2L_8324561_DEL [dm6]	CCC	C	5.106e^-4	1	INTRON CG7781
3L	16497729	3L_16497729_SNP [dm3] 3L_16504629_SNP [dm6]	T	A	5.107e^-4	1	INTRON CG43373
3L	18162673	3L_18162673_SNP [dm3] 3L_18169573_SNP [dm6]	A	C	5.116e^-4	1	UTR_3_PRIME W
3L	6465940	3L_6465940_SNP [dm3] 3L_6472840_SNP [dm6]	A	G	5.116e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10517707	3L_10517707_SNP [dm3] 3L_10524607_SNP [dm6]	A	T	5.144e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	13266017	3R_13266017_SNP [dm3] 3R_17440295_SNP [dm6]	A	T	5.153e^-4	1	SYNONYMOUS_CODING CG14331 INTRON CG5873
3R	21274893	3R_21274893_SNP [dm3] 3R_25449171_SNP [dm6]	C	T	5.156e^-4	1	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21186502	X_21186502_SNP [dm3] X_21315475_SNP [dm6]	G	T	5.156e^-4	1	UPSTREAM Rpt6 INTRON CG1801	transposable element FlyBase
2L	20796592	2L_20796592_INS [dm3] 2L_20796592_INS [dm6]	T	TA	5.173e^-4	1	INTRON vari	TF binding site BDTNP1_TFBS_dl
3L	8692075	3L_8692075_SNP [dm3] 3L_8698975_SNP [dm6]	G	A	5.174e^-4	1	INTERGENIC
3R	6930815	3R_6930815_SNP [dm3] 3R_11105093_SNP [dm6]	C	G	5.175e^-4	1	INTERGENIC
3R	10221591	3R_10221591_SNP [dm3] 3R_14395869_SNP [dm6]	T	C	5.175e^-4	1	SPLICE_SITE_REGION cv-c DOWNSTREAM mir-2281 INTRON cv-c	TF binding site mE1_TFBS_cad
2R	7120111	2R_7120111_SNP [dm3] 2R_11232606_SNP [dm6]	C	T	5.184e^-4	1	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	10091062	2R_10091062_SNP [dm3] 2R_14203557_SNP [dm6]	G	T	5.185e^-4	1	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21188931	X_21188931_SNP [dm3] X_21317904_SNP [dm6]	T	C	5.189e^-4	1	UPSTREAM CG1801 DOWNSTREAM CG33713 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2R	14842197	2R_14842197_SNP [dm3] 2R_18954692_SNP [dm6]	T	C	5.191e^-4	1	INTRON sano
3R	18980822	3R_18980822_SNP [dm3] 3R_23155100_SNP [dm6]	A	G	5.213e^-4	1	INTRON unk	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	18422679	2R_18422679_SNP [dm3] 2R_22535174_SNP [dm6]	A	G	5.227e^-4	1	INTRON px
3R	21742234	3R_21742234_SNP [dm3] 3R_25916512_SNP [dm6]	G	C	5.255e^-4	1	SYNONYMOUS_CODING CG42235 INTRON CG42235
2R	8889358	2R_8889358_SNP [dm3] 2R_13001853_SNP [dm6]	G	A	5.279e^-4	1	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9351921	2L_9351921_INS [dm3] 2L_9351921_INS [dm6]	T	TT	5.280e^-4	1	DOWNSTREAM CG13110 INTERGENIC
2R	7606600	2R_7606600_DEL [dm3] 2R_11719095_DEL [dm6]	AA	A	5.282e^-4	1	INTRON pyr
2R	13087115	2R_13087115_SNP [dm3] 2R_17199610_SNP [dm6]	T	C	5.285e^-4	1	INTERGENIC
2L	13838412	2L_13838412_SNP [dm3] 2L_13838412_SNP [dm6]	A	T	5.294e^-4	1	DOWNSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_HSA
3L	5967978	3L_5967978_SNP [dm3] 3L_5974878_SNP [dm6]	T	C	5.300e^-4	1	INTRON CG10479	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11209596	3L_11209596_SNP [dm3] 3L_11216496_SNP [dm6]	A	T	5.304e^-4	1	INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl
X	4001624	X_4001624_INS [dm3] X_4107591_INS [dm6]	A	AA	5.322e^-4	1	INTRON cib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18667970	2R_18667970_INS [dm3] 2R_22780465_INS [dm6]	T	TAA	5.335e^-4	1	INTRON CG42260
2L	639857	2L_639857_SNP [dm3] 2L_639857_SNP [dm6]	C	A	5.336e^-4	1	DOWNSTREAM ds INTERGENIC
3R	21888848	3R_21888848_SNP [dm3] 3R_26063126_SNP [dm6]	C	T	5.341e^-4	1	UPSTREAM CG14551 INTERGENIC
2L	5576313	2L_5576313_SNP [dm3] 2L_5576313_SNP [dm6]	A	G	5.343e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	14321370	X_14321370_SNP [dm3] X_14427337_SNP [dm6]	A	T	5.345e^-4	1	INTRON dpr8
2R	6995302	2R_6995302_SNP [dm3] 2R_11107797_SNP [dm6]	T	A	5.349e^-4	1	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10741748	3L_10741748_SNP [dm3] 3L_10748648_SNP [dm6]	G	A	5.350e^-4	1	INTERGENIC
2R	12062950	2R_12062950_INS [dm3] 2R_16175445_INS [dm6]	A	ACATA	5.358e^-4	1	INTRON Ptp52F	TF binding site mE1_TFBS_cad
3R	11922586	3R_11922586_SNP [dm3] 3R_16096864_SNP [dm6]	C	A	5.363e^-4	1	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	5564001	2L_5564001_DEL [dm3] 2L_5564001_DEL [dm6]	GTTTGAG	G	5.367e^-4	1	DOWNSTREAM GluRIIB & 1 other INTERGENIC
2R	18838320	2R_18838320_SNP [dm3] 2R_22950797_SNP [dm6]	C	A	5.370e^-4	1	DOWNSTREAM CR32835 INTERGENIC
3R	26060549	3R_26060549_SNP [dm3] 3R_30234827_SNP [dm6]	G	A	5.372e^-4	1	INTERGENIC
X	22381014	X_22381014_SNP [dm3] X_22979178_SNP [dm6]	C	A	5.374e^-4	1	INTERGENIC	transposable element FlyBase
2R	11732455	2R_11732455_SNP [dm3] 2R_15844950_SNP [dm6]	T	C	5.376e^-4	1	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA
3L	10576180	3L_10576180_SNP [dm3] 3L_10583080_SNP [dm6]	C	T	5.376e^-4	1	INTRON A2bp1
3R	16935341	3R_16935341_SNP [dm3] 3R_21109619_SNP [dm6]	C	T	5.383e^-4	1	INTRON rtet
3R	16742444	3R_16742444_DEL [dm3] 3R_20916722_DEL [dm6]	ATAC	A	5.385e^-4	1	INTRON CG31191 & 1 other
3R	17378493	3R_17378493_SNP [dm3] 3R_21552771_SNP [dm6]	A	G	5.389e^-4	1	INTRON slou
X	10855427	X_10855427_SNP [dm3] X_10961394_SNP [dm6]	T	C	5.394e^-4	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3R	18980743	3R_18980743_SNP [dm3] 3R_23155021_SNP [dm6]	T	G	5.405e^-4	1	INTRON unk	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24307009	3R_24307009_SNP [dm3] 3R_28481287_SNP [dm6]	A	T	5.430e^-4	1	INTERGENIC
X	11737389	X_11737389_SNP [dm3] X_11843356_SNP [dm6]	T	C	5.431e^-4	1	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13351027	3L_13351027_SNP [dm3] 3L_13357927_SNP [dm6]	T	C	5.432e^-4	1	DOWNSTREAM Nplp2 INTERGENIC
3R	4530923	3R_4530923_SNP [dm3] 3R_8705201_SNP [dm6]	T	C	5.443e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
X	18931742	X_18931742_SNP [dm3] X_19037709_SNP [dm6]	C	T	5.445e^-4	1	INTERGENIC
2R	14129055	2R_14129055_INS [dm3] 2R_18241550_INS [dm6]	C	CTCTCCC	5.463e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26467717	3R_26467717_SNP [dm3] 3R_30641995_SNP [dm6]	G	C	5.463e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5816208	X_5816208_SNP [dm3] X_5922175_SNP [dm6]	T	G	5.463e^-4	1	INTRON CG3726
2R	10641916	2R_10641916_SNP [dm3] 2R_14754411_SNP [dm6]	C	T	5.465e^-4	1	SYNONYMOUS_CODING CG10151	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9898757	2R_9898757_SNP [dm3] 2R_14011252_SNP [dm6]	A	G	5.466e^-4	1	INTRON mam
2R	10812470	2R_10812470_SNP [dm3] 2R_14924965_SNP [dm6]	T	A	5.466e^-4	1	INTRON CG10249
X	5694207	X_5694207_SNP [dm3] X_5800174_SNP [dm6]	T	G	5.470e^-4	1	INTERGENIC
3R	26051984	3R_26051984_SNP [dm3] 3R_30226262_SNP [dm6]	G	A	5.471e^-4	1	INTERGENIC
2L	16661175	2L_16661175_SNP [dm3] 2L_16661175_SNP [dm6]	G	A	5.474e^-4	1	SYNONYMOUS_CODING CG42389	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8216123	3R_8216123_SNP [dm3] 3R_12390401_SNP [dm6]	T	A	5.475e^-4	1	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2R	19533196	2R_19533196_SNP [dm3] 2R_23645673_SNP [dm6]	C	T	5.500e^-4	1	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
X	8354390	X_8354390_SNP [dm3] X_8460357_SNP [dm6]	A	T	5.502e^-4	1	INTRON CG15347	transposable element FlyBase
2R	16074725	2R_16074725_SNP [dm3] 2R_20187220_SNP [dm6]	A	T	5.513e^-4	1	INTERGENIC
X	9327514	X_9327514_SNP [dm3] X_9433481_SNP [dm6]	A	T	5.516e^-4	1	INTRON mgl
X	3397569	X_3397569_SNP [dm3] X_3503536_SNP [dm6]	T	C	5.518e^-4	1	INTRON CR44999 & 1 other
2L	4194544	2L_4194544_SNP [dm3] 2L_4194544_SNP [dm6]	C	T	5.520e^-4	1	INTRON CG3714
2L	5566821	2L_5566821_SNP [dm3] 2L_5566821_SNP [dm6]	G	A	5.524e^-4	1	INTERGENIC
2R	15323716	2R_15323716_SNP [dm3] 2R_19436211_SNP [dm6]	G	T	5.526e^-4	1	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20670509	2L_20670509_SNP [dm3] 2L_20670509_SNP [dm6]	T	C	5.530e^-4	1	INTRON CG31678
3R	15004317	3R_15004317_SNP [dm3] 3R_19178595_SNP [dm6]	A	C	5.553e^-4	1	DOWNSTREAM CG14282 INTRON CG5555	TF binding site mE1_TFBS_sens
2L	11046005	2L_11046005_SNP [dm3] 2L_11046005_SNP [dm6]	C	A	5.562e^-4	1	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5694025	X_5694025_SNP [dm3] X_5799992_SNP [dm6]	G	T	5.562e^-4	1	INTERGENIC
2L	14691659	2L_14691659_SNP [dm3] 2L_14691659_SNP [dm6]	A	G	5.566e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	18385188	X_18385188_SNP [dm3] X_18491155_SNP [dm6]	G	T	5.571e^-4	1	DOWNSTREAM CG15044 INTERGENIC
X	21274532	X_21274532_DEL [dm3] X_21403505_DEL [dm6]	GCAACACGA	G	5.573e^-4	1	UPSTREAM CG1678 INTERGENIC
2R	12767668	2R_12767668_SNP [dm3] 2R_16880163_SNP [dm6]	G	T	5.619e^-4	1	UPSTREAM CG6472 INTRON CG8910
3R	13389526	3R_13389526_SNP [dm3] 3R_17563804_SNP [dm6]	C	A	5.620e^-4	1	INTRON Hmx
3R	13678422	3R_13678422_SNP [dm3] 3R_17852700_SNP [dm6]	G	C	5.622e^-4	1	INTRON tinc
2R	17967303	2R_17967303_SNP [dm3] 2R_22079798_SNP [dm6]	T	G	5.623e^-4	1	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17967309	2R_17967309_SNP [dm3] 2R_22079804_SNP [dm6]	A	C	5.623e^-4	1	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12634240	3L_12634240_SNP [dm3] 3L_12641140_SNP [dm6]	T	A	5.631e^-4	1	INTRON CR32111
2R	14128960	2R_14128960_SNP [dm3] 2R_18241455_SNP [dm6]	A	T	5.638e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14152039	X_14152039_SNP [dm3] X_14258006_SNP [dm6]	G	A	5.656e^-4	1	NON_SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7773055	X_7773055_SNP [dm3] X_7879022_SNP [dm6]	G	T	5.660e^-4	1	UPSTREAM Ir7d DOWNSTREAM Ir7e INTERGENIC
3R	6746899	3R_6746899_SNP [dm3] 3R_10921177_SNP [dm6]	T	C	5.660e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16497735	3L_16497735_SNP [dm3] 3L_16504635_SNP [dm6]	C	T	5.679e^-4	1	INTRON CG43373
X	7771953	X_7771953_SNP [dm3] X_7877920_SNP [dm6]	A	G	5.686e^-4	1	SYNONYMOUS_CODING Ir7d
X	9881833	X_9881833_SNP [dm3] X_9987800_SNP [dm6]	A	T	5.695e^-4	1	INTERGENIC
2R	12578974	2R_12578974_SNP [dm3] 2R_16691469_SNP [dm6]	A	T	5.696e^-4	1	UPSTREAM CG5210 INTRON CG30463 & 1 other
3L	10337011	3L_10337011_SNP [dm3] 3L_10343911_SNP [dm6]	C	T	5.704e^-4	1	INTERGENIC
2L	5329376	2L_5329376_SNP [dm3] 2L_5329376_SNP [dm6]	G	T	5.718e^-4	1	UPSTREAM CG14022 & 1 other INTERGENIC
2L	2493751	2L_2493751_SNP [dm3] 2L_2493751_SNP [dm6]	C	A	5.725e^-4	1	INTRON oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6794499	2R_6794499_SNP [dm3] 2R_10906994_SNP [dm6]	T	G	5.725e^-4	1	INTERGENIC
3L	1585195	3L_1585195_SNP [dm3] 3L_1585195_SNP [dm6]	G	A	5.727e^-4	1	INTRON CG13917
2R	9696037	2R_9696037_SNP [dm3] 2R_13808532_SNP [dm6]	A	C	5.729e^-4	1	INTRON stj
3R	26049082	3R_26049082_SNP [dm3] 3R_30223360_SNP [dm6]	C	A	5.729e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	12797341	X_12797341_SNP [dm3] X_12903308_SNP [dm6]	G	A	5.729e^-4	1	UPSTREAM CG4407 DOWNSTREAM CG4404 INTRON CG4407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17972961	X_17972961_INS [dm3] X_18078928_INS [dm6]	C	CTC	5.744e^-4	1	UTR_3_PRIME CG7536 DOWNSTREAM CG7536 & 1 other
3L	7414844	3L_7414844_SNP [dm3] 3L_7421744_SNP [dm6]	C	T	5.744e^-4	1	INTERGENIC
3R	22099131	3R_22099131_INS [dm3] 3R_26273409_INS [dm6]	T	TCACAG	5.745e^-4	1	INTRON CG6154
3R	10739900	3R_10739900_SNP [dm3] 3R_14914178_SNP [dm6]	A	G	5.751e^-4	1	INTERGENIC
3R	4530840	3R_4530840_SNP [dm3] 3R_8705118_SNP [dm6]	T	A	5.763e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2048179	3L_2048179_SNP [dm3] 3L_2048179_SNP [dm6]	C	G	5.767e^-4	1	SYNONYMOUS_CODING sls
X	2222730	X_2222730_SNP [dm3] X_2328697_SNP [dm6]	T	C	5.769e^-4	1	SYNONYMOUS_CODING CG2854 INTRON phl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19583326	2L_19583326_SNP [dm3] 2L_19583326_SNP [dm6]	C	T	5.773e^-4	1	SYNONYMOUS_CODING CG10262 UPSTREAM Hakai & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17997852	2R_17997852_SNP [dm3] 2R_22110347_SNP [dm6]	C	A	5.793e^-4	1	NON_SYNONYMOUS_CODING Vrp1	TF binding site mE1_TFBS_cad
2R	14129045	2R_14129045_SNP [dm3] 2R_18241540_SNP [dm6]	C	A	5.795e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6374806	2R_6374806_SNP [dm3] 2R_10487301_SNP [dm6]	T	G	5.800e^-4	1	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5574880	2L_5574880_SNP [dm3] 2L_5574880_SNP [dm6]	G	C	5.804e^-4	1	INTERGENIC
X	12181490	X_12181490_SNP [dm3] X_12287457_SNP [dm6]	G	A	5.810e^-4	1	INTRON Ten-a
2R	20000254	2R_20000254_SNP [dm3] 2R_24112731_SNP [dm6]	C	G	5.811e^-4	1	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1464130	2L_1464130_SNP [dm3] 2L_1464130_SNP [dm6]	A	G	5.812e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	6994209	X_6994209_SNP [dm3] X_7100176_SNP [dm6]	A	T	5.826e^-4	1	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4448068	2L_4448068_SNP [dm3] 2L_4448068_SNP [dm6]	A	G	5.834e^-4	1	SYNONYMOUS_CODING MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20953125	X_20953125_SNP [dm3] X_21082098_SNP [dm6]	A	T	5.837e^-4	1	UTR_3_PRIME bves
X	3419837	X_3419837_DEL [dm3] X_3525804_DEL [dm6]	CC	C	5.838e^-4	1	INTRON CG32791
2R	10644580	2R_10644580_SNP [dm3] 2R_14757075_SNP [dm6]	G	T	5.840e^-4	1	UTR_3_PRIME Trs31 UPSTREAM CG10151 DOWNSTREAM CG12857 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7213221	2L_7213221_SNP [dm3] 2L_7213221_SNP [dm6]	T	G	5.850e^-4	1	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10209297	3R_10209297_SNP [dm3] 3R_14383575_SNP [dm6]	G	T	5.852e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14978251	3R_14978251_SNP [dm3] 3R_19152529_SNP [dm6]	G	A	5.860e^-4	1	INTRON CG5835
2R	10791688	2R_10791688_SNP [dm3] 2R_14904183_SNP [dm6]	G	A	5.871e^-4	1	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_chinmo
3L	16497814	3L_16497814_SNP [dm3] 3L_16504714_SNP [dm6]	T	C	5.872e^-4	1	INTRON CG43373
X	7629780	X_7629780_SNP [dm3] X_7735747_SNP [dm6]	A	T	5.882e^-4	1	INTRON Rab39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11620923	3L_11620923_SNP [dm3] 3L_11627823_SNP [dm6]	T	A	5.884e^-4	1	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	18174582	3L_18174582_INS [dm3] 3L_18181482_INS [dm6]	A	AAA	5.891e^-4	1	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24487950	3R_24487950_SNP [dm3] 3R_28662228_SNP [dm6]	G	A	5.891e^-4	1	INTERGENIC
3R	3680117	3R_3680117_SNP [dm3] 3R_7854395_SNP [dm6]	T	C	5.897e^-4	1	UTR_3_PRIME CG34384 DOWNSTREAM CG34384
2L	639698	2L_639698_SNP [dm3] 2L_639698_SNP [dm6]	T	C	5.909e^-4	1	DOWNSTREAM ds INTERGENIC
X	11362630	X_11362630_SNP [dm3] X_11468597_SNP [dm6]	G	A	5.914e^-4	1	INTRON CG43155
2L	7986390	2L_7986390_SNP [dm3] 2L_7986390_SNP [dm6]	C	T	5.918e^-4	1	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
3L	13241196	3L_13241196_SNP [dm3] 3L_13248096_SNP [dm6]	G	C	5.918e^-4	1	SYNONYMOUS_CODING CG32119 INTRON caps
2L	10307584	2L_10307584_SNP [dm3] 2L_10307584_SNP [dm6]	C	T	5.923e^-4	1	SYNONYMOUS_CODING CG4968 UPSTREAM CG5390 DOWNSTREAM Cdk5alpha	TF binding site mE1_TFBS_sens
3L	12790411	3L_12790411_DEL [dm3] 3L_12797311_DEL [dm6]	TTTCCC	T	5.923e^-4	1	INTRON Atg1
3R	15476867	3R_15476867_SNP [dm3] 3R_19651145_SNP [dm6]	A	G	5.934e^-4	1	START_GAINED CG31219 UTR_5_PRIME CG31219 DOWNSTREAM CG31220 INTRON CG31219
X	1353938	X_1353938_SNP [dm3] X_1459905_SNP [dm6]	G	A	5.936e^-4	1	SYNONYMOUS_CODING CG14786 DOWNSTREAM CG14787	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9937565	3L_9937565_INS [dm3] 3L_9944465_INS [dm6]	T	TG	5.941e^-4	1	INTRON CG34356
3R	23730871	3R_23730871_SNP [dm3] 3R_27905149_SNP [dm6]	G	A	5.942e^-4	1	UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18795153	3R_18795153_DEL [dm3] 3R_22969431_DEL [dm6]	ACAAGGTGGTGGTGA...	A	5.943e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7132789	2R_7132789_SNP [dm3] 2R_11245284_SNP [dm6]	A	G	5.950e^-4	1	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
2R	7132894	2R_7132894_SNP [dm3] 2R_11245389_SNP [dm6]	A	G	5.951e^-4	1	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
2R	18292453	2R_18292453_SNP [dm3] 2R_22404948_SNP [dm6]	G	A	5.956e^-4	1	INTRON CG6044	TF binding site mE1_TFBS_Trl
2R	14417706	2R_14417706_SNP [dm3] 2R_18530201_SNP [dm6]	G	A	5.963e^-4	1	INTRON CG10924	TF binding site BDTNP1_TFBS_twi
2R	4695668	2R_4695668_SNP [dm3] 2R_8808163_SNP [dm6]	T	C	5.966e^-4	1	INTRON sns	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	6438813	2R_6438813_SNP [dm3] 2R_10551308_SNP [dm6]	A	G	5.966e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	8733856	2R_8733856_SNP [dm3] 2R_12846351_SNP [dm6]	G	A	5.968e^-4	1	SYNONYMOUS_CODING CG17575 DOWNSTREAM antr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15990940	2L_15990940_SNP [dm3] 2L_15990940_SNP [dm6]	A	C	5.980e^-4	1	DOWNSTREAM CR43412 INTERGENIC
3R	24307048	3R_24307048_INS [dm3] 3R_28481326_INS [dm6]	T	TGAAGGTACGACAGCGT...	5.980e^-4	1	INTERGENIC
3L	16244952	3L_16244952_SNP [dm3] 3L_16251852_SNP [dm6]	A	G	5.981e^-4	1	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
3L	5968584	3L_5968584_SNP [dm3] 3L_5975484_SNP [dm6]	T	G	5.987e^-4	1	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23774365	3R_23774365_SNP [dm3] 3R_27948643_SNP [dm6]	C	T	5.992e^-4	1	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	10786648	2R_10786648_INS [dm3] 2R_14899143_INS [dm6]	G	GG	5.996e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16628423	2L_16628423_SNP [dm3] 2L_16628423_SNP [dm6]	T	C	5.997e^-4	1	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	720378	2L_720378_SNP [dm3] 2L_720378_SNP [dm6]	C	T	6.023e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1706207	X_1706207_SNP [dm3] X_1812174_SNP [dm6]	G	A	6.027e^-4	1	INTRON CG42666	TF binding site mE1_TFBS_HSA
2R	6994275	2R_6994275_SNP [dm3] 2R_11106770_SNP [dm6]	G	T	6.035e^-4	1	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22772780	3R_22772780_SNP [dm3] 3R_26947058_SNP [dm6]	T	C	6.037e^-4	1	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other
3R	22383054	3R_22383054_SNP [dm3] 3R_26557332_SNP [dm6]	C	A	6.040e^-4	1	INTRON scrib
X	8060308	X_8060308_INS [dm3] X_8166275_INS [dm6]	T	TT	6.042e^-4	1	UTR_3_PRIME CG2278 UPSTREAM Or7a DOWNSTREAM CG2278
3L	16622612	3L_16622612_SNP [dm3] 3L_16629512_SNP [dm6]	C	T	6.052e^-4	1	INTRON Abl
3L	649716	3L_649716_SNP [dm3] 3L_649716_SNP [dm6]	C	G	6.068e^-4	1	INTRON Gale	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	7968195	2R_7968195_SNP [dm3] 2R_12080690_SNP [dm6]	T	A	6.073e^-4	1	UPSTREAM CG13186 INTERGENIC	TF binding site mE1_TFBS_inv
2R	9358832	2R_9358832_SNP [dm3] 2R_13471327_SNP [dm6]	T	A	6.075e^-4	1	INTRON arr
3L	2910819	3L_2910819_SNP [dm3] 3L_2910819_SNP [dm6]	G	A	6.076e^-4	1	INTRON Shab
X	10895195	X_10895195_SNP [dm3] X_11001162_SNP [dm6]	T	C	6.086e^-4	1	INTRON CG42339
2L	18889590	2L_18889590_SNP [dm3] 2L_18889590_SNP [dm6]	G	A	6.088e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
X	17586989	X_17586989_SNP [dm3] X_17692956_SNP [dm6]	T	A	6.091e^-4	1	INTRON chas
2R	17972450	2R_17972450_SNP [dm3] 2R_22084945_SNP [dm6]	A	T	6.105e^-4	1	DOWNSTREAM CG13502 INTRON Synj
2L	7216307	2L_7216307_SNP [dm3] 2L_7216307_SNP [dm6]	C	A	6.118e^-4	1	INTRON CG13784
2R	11450075	2R_11450075_SNP [dm3] 2R_15562570_SNP [dm6]	C	A	6.127e^-4	1	DOWNSTREAM CG8195 & 1 other INTERGENIC
3R	10739902	3R_10739902_SNP [dm3] 3R_14914180_SNP [dm6]	T	A	6.129e^-4	1	INTERGENIC
X	2180845	X_2180845_SNP [dm3] X_2286812_SNP [dm6]	T	C	6.135e^-4	1	INTRON CG2865	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27642954	3R_27642954_SNP [dm3] 3R_31817232_SNP [dm6]	G	T	6.137e^-4	1	INTRON RhoGAP100F
3L	16497734	3L_16497734_SNP [dm3] 3L_16504634_SNP [dm6]	T	G	6.149e^-4	1	INTRON CG43373
3R	2555262	3R_2555262_SNP [dm3] 3R_6729540_SNP [dm6]	A	G	6.160e^-4	1	INTRON pb	regulatory region FlyBase REDfly_CRMs
3R	22245397	3R_22245397_SNP [dm3] 3R_26419675_SNP [dm6]	C	G	6.161e^-4	1	INTERGENIC
3L	13623739	3L_13623739_SNP [dm3] 3L_13630639_SNP [dm6]	G	C	6.174e^-4	1	INTRON bru-3
X	7772262	X_7772262_SNP [dm3] X_7878229_SNP [dm6]	G	T	6.176e^-4	1	SYNONYMOUS_CODING Ir7d
3R	18981501	3R_18981501_SNP [dm3] 3R_23155779_SNP [dm6]	A	C	6.181e^-4	1	INTRON unk	TF binding site mE1_TFBS_sens
2R	13943386	2R_13943386_SNP [dm3] 2R_18055881_SNP [dm6]	T	A	6.184e^-4	1	DOWNSTREAM CG10912 & 1 other INTERGENIC
2L	20804046	2L_20804046_SNP [dm3] 2L_20804046_SNP [dm6]	A	C	6.185e^-4	1	INTRON CG9328	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12988649	2R_12988649_SNP [dm3] 2R_17101144_SNP [dm6]	A	T	6.188e^-4	1	INTRON CG30456
2L	6548662	2L_6548662_SNP [dm3] 2L_6548662_SNP [dm6]	A	G	6.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6548663	2L_6548663_SNP [dm3] 2L_6548663_SNP [dm6]	A	T	6.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	21274715	X_21274715_SNP [dm3] X_21403688_SNP [dm6]	A	T	6.200e^-4	1	UPSTREAM CG1678 INTERGENIC
X	17974432	X_17974432_SNP [dm3] X_18080399_SNP [dm6]	G	A	6.205e^-4	1	INTRON CG7536	TF binding site mE1_TFBS_inv
3L	16497758	3L_16497758_MNP [dm3] 3L_16504658_MNP [dm6]	CGAAAT	AATTCG	6.210e^-4	1	INTRON CG43373
X	1599462	X_1599462_SNP [dm3] X_1705429_SNP [dm6]	T	C	6.219e^-4	1	INTERGENIC
X	16842747	X_16842747_SNP [dm3] X_16948714_SNP [dm6]	T	G	6.223e^-4	1	UPSTREAM CG13000 INTRON RhoGAP15B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16364621	X_16364621_SNP [dm3] X_16470588_SNP [dm6]	C	G	6.229e^-4	1	INTRON para
3R	24068525	3R_24068525_SNP [dm3] 3R_28242803_SNP [dm6]	C	A	6.233e^-4	1	INTERGENIC
3R	22099292	3R_22099292_SNP [dm3] 3R_26273570_SNP [dm6]	A	T	6.235e^-4	1	INTRON CG6154
X	10819156	X_10819156_SNP [dm3] X_10925123_SNP [dm6]	G	T	6.243e^-4	1	SYNONYMOUS_CODING v
2R	18569830	2R_18569830_SNP [dm3] 2R_22682325_SNP [dm6]	T	C	6.253e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10626639	2R_10626639_SNP [dm3] 2R_14739134_SNP [dm6]	G	A	6.261e^-4	1	DOWNSTREAM CG12858 EXON CR43428
2R	15537046	2R_15537046_SNP [dm3] 2R_19649541_SNP [dm6]	A	G	6.262e^-4	1	INTERGENIC
X	7703887	X_7703887_SNP [dm3] X_7809854_SNP [dm6]	T	A	6.264e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13329965	X_13329965_SNP [dm3] X_13435932_SNP [dm6]	G	C	6.286e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16269599	2R_16269599_SNP [dm3] 2R_20382094_SNP [dm6]	G	T	6.296e^-4	1	INTERGENIC
2R	3404936	2R_3404936_SNP [dm3] 2R_7517431_SNP [dm6]	C	T	6.311e^-4	1	SYNONYMOUS_CODING CG1602	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17696137	3L_17696137_SNP [dm3] 3L_17703037_SNP [dm6]	T	A	6.320e^-4	1	INTRON Ccn
3R	16461819	3R_16461819_SNP [dm3] 3R_20636097_SNP [dm6]	T	C	6.337e^-4	1	UPSTREAM Lrrk INTRON Lrrk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	10221683	3R_10221683_SNP [dm3] 3R_14395961_SNP [dm6]	A	G	6.340e^-4	1	SYNONYMOUS_CODING cv-c DOWNSTREAM mir-2281	TF binding site mE1_TFBS_cad
3R	26321383	3R_26321383_SNP [dm3] 3R_30495661_SNP [dm6]	T	G	6.345e^-4	1	INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
X	14043571	X_14043571_SNP [dm3] X_14149538_SNP [dm6]	C	T	6.361e^-4	1	INTERGENIC
3L	10766372	3L_10766372_SNP [dm3] 3L_10773272_SNP [dm6]	A	T	6.365e^-4	1	UTR_3_PRIME CG43245 INTRON CG43245
2R	16056151	2R_16056151_SNP [dm3] 2R_20168646_SNP [dm6]	C	T	6.369e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9667719	X_9667719_SNP [dm3] X_9773686_SNP [dm6]	T	A	6.374e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14330620	2R_14330620_SNP [dm3] 2R_18443115_SNP [dm6]	C	T	6.392e^-4	1	INTRON slim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	23481086	3R_23481086_SNP [dm3] 3R_27655364_SNP [dm6]	A	T	6.397e^-4	1	INTRON tau
2R	13105672	2R_13105672_SNP [dm3] 2R_17218167_SNP [dm6]	G	A	6.403e^-4	1	INTRON mbl
2R	17998499	2R_17998499_SNP [dm3] 2R_22110994_SNP [dm6]	C	G	6.405e^-4	1	INTRON Vrp1	TF binding site mE1_TFBS_cad
X	1681033	X_1681033_SNP [dm3] X_1787000_SNP [dm6]	C	T	6.407e^-4	1	UTR_3_PRIME Adar INTRON CG42666
2R	13230617	2R_13230617_SNP [dm3] 2R_17343112_SNP [dm6]	A	G	6.415e^-4	1	INTRON mbl
3L	5677742	3L_5677742_SNP [dm3] 3L_5684642_SNP [dm6]	T	A	6.419e^-4	1	INTRON sif
2L	2235774	2L_2235774_SNP [dm3] 2L_2235774_SNP [dm6]	A	G	6.427e^-4	1	SYNONYMOUS_CODING Sec24CD UPSTREAM CR44115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26105331	3R_26105331_SNP [dm3] 3R_30279609_SNP [dm6]	T	C	6.427e^-4	1	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10821098	X_10821098_SNP [dm3] X_10927065_SNP [dm6]	T	G	6.443e^-4	1	UPSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	10298917	2L_10298917_SNP [dm3] 2L_10298917_SNP [dm6]	G	C	6.448e^-4	1	SYNONYMOUS_CODING CYLD UPSTREAM CYLD DOWNSTREAM CR44968	TF binding site BDTNP1_TFBS_dl
2L	3589139	2L_3589139_SNP [dm3] 2L_3589139_SNP [dm6]	T	C	6.450e^-4	1	EXON CR43823	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	20985703	3R_20985703_SNP [dm3] 3R_25159981_SNP [dm6]	A	T	6.464e^-4	1	INTERGENIC
3L	1855340	3L_1855340_SNP [dm3] 3L_1855340_SNP [dm6]	C	A	6.475e^-4	1	START_GAINED CG13936 UTR_5_PRIME CG13936 UPSTREAM CG13936
X	5694178	X_5694178_SNP [dm3] X_5800145_SNP [dm6]	A	T	6.478e^-4	1	INTERGENIC
X	12931884	X_12931884_SNP [dm3] X_13037851_SNP [dm6]	A	G	6.479e^-4	1	INTRON rad
2R	15060635	2R_15060635_INS [dm3] 2R_19173130_INS [dm6]	C	CGATATTTAACTTTCAGCTC...	6.495e^-4	1	INTRON CG10737
3R	17249556	3R_17249556_SNP [dm3] 3R_21423834_SNP [dm6]	C	T	6.496e^-4	1	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2L	10075322	2L_10075322_SNP [dm3] 2L_10075322_SNP [dm6]	G	A	6.499e^-4	1	SYNONYMOUS_CODING CG44153
3R	22412353	3R_22412353_SNP [dm3] 3R_26586631_SNP [dm6]	T	A	6.500e^-4	1	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

mn_BoutNumber_Day phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results