DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.870e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02068
In_2R_NS	0.03207

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.9573	0.0509

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2198 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8443057	2R_8443057_SNP [dm3] 2R_12555552_SNP [dm6]	T	A	1.570e^-6	0.585	INTRON fra
3L	16415800	3L_16415800_DEL [dm3] 3L_16422700_DEL [dm6]	AATC	A	1.638e^-6	0.585	DOWNSTREAM dsx-c73A INTRON CG33158
3L	16415818	3L_16415818_MNP [dm3] 3L_16422718_MNP [dm6]	CTTTA	AAGAC	2.151e^-6	0.585	DOWNSTREAM dsx-c73A INTRON CG33158
3L	16415828	3L_16415828_SNP [dm3] 3L_16422728_SNP [dm6]	T	A	2.151e^-6	0.585	DOWNSTREAM dsx-c73A INTRON CG33158
2R	18376926	2R_18376926_SNP [dm3] 2R_22489421_SNP [dm6]	T	C	2.387e^-6	0.585	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18820407	2L_18820407_SNP [dm3] 2L_18820407_SNP [dm6]	A	G	2.688e^-6	0.585	NON_SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
X	12865951	X_12865951_SNP [dm3] X_12971918_SNP [dm6]	A	T	2.815e^-6	0.585	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	18821569	2L_18821569_SNP [dm3] 2L_18821569_SNP [dm6]	C	A	3.142e^-6	0.585	INTRON CG17324
X	12865927	X_12865927_SNP [dm3] X_12971894_SNP [dm6]	A	T	3.537e^-6	0.585	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	18812043	2L_18812043_SNP [dm3] 2L_18812043_SNP [dm6]	T	A	3.538e^-6	0.585	UPSTREAM CG10570 & 3 others INTERGENIC
2L	18820390	2L_18820390_SNP [dm3] 2L_18820390_SNP [dm6]	G	A	3.622e^-6	0.585	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
2R	8439063	2R_8439063_SNP [dm3] 2R_12551558_SNP [dm6]	A	G	4.239e^-6	0.585	INTRON fra
X	12865993	X_12865993_SNP [dm3] X_12971960_SNP [dm6]	C	T	4.318e^-6	0.585	SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	16415825	3L_16415825_SNP [dm3] 3L_16422725_SNP [dm6]	C	T	4.363e^-6	0.585	DOWNSTREAM dsx-c73A INTRON CG33158
3L	12928122	3L_12928122_SNP [dm3] 3L_12935022_SNP [dm6]	G	C	6.745e^-6	0.759	INTERGENIC
3L	16415839	3L_16415839_SNP [dm3] 3L_16422739_SNP [dm6]	A	G	7.345e^-6	0.759	DOWNSTREAM dsx-c73A INTRON CG33158
2L	3176619	2L_3176619_SNP [dm3] 2L_3176619_SNP [dm6]	C	T	7.605e^-6	0.759	INTRON CG34393
2L	20788754	2L_20788754_SNP [dm3] 2L_20788754_SNP [dm6]	T	C	7.958e^-6	0.759	UTR_3_PRIME Pomp & 1 other DOWNSTREAM vari
2R	10523774	2R_10523774_DEL [dm3] 2R_14636269_DEL [dm6]	AG	A	8.462e^-6	0.759	INTERGENIC
3R	22252607	3R_22252607_SNP [dm3] 3R_26426885_SNP [dm6]	A	G	8.658e^-6	0.759	INTRON CR31084
3L	14379759	3L_14379759_SNP [dm3] 3L_14386659_SNP [dm6]	G	A	8.878e^-6	0.759	INTERGENIC
2L	19156600	2L_19156600_SNP [dm3] 2L_19156600_SNP [dm6]	T	A	8.908e^-6	0.759	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	14086900	3L_14086900_SNP [dm3] 3L_14093800_SNP [dm6]	A	G	1.039e^-5	0.772	DOWNSTREAM Fbp1 INTERGENIC
2L	19156816	2L_19156816_SNP [dm3] 2L_19156816_SNP [dm6]	C	G	1.049e^-5	0.772	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	19964812	2R_19964812_SNP [dm3] 2R_24077289_SNP [dm6]	C	T	1.170e^-5	0.772	SYNONYMOUS_CODING Mlp60A DOWNSTREAM CG10339	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15365140	3L_15365140_SNP [dm3] 3L_15372040_SNP [dm6]	T	A	1.218e^-5	0.772	INTERGENIC
3R	9153049	3R_9153049_SNP [dm3] 3R_13327327_SNP [dm6]	C	T	1.227e^-5	0.772	INTERGENIC
3R	19249339	3R_19249339_SNP [dm3] 3R_23423617_SNP [dm6]	G	A	1.246e^-5	0.772	INTRON CG4374
2R	6848572	2R_6848572_SNP [dm3] 2R_10961067_SNP [dm6]	T	C	1.319e^-5	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16748105	2R_16748105_SNP [dm3] 2R_20860600_SNP [dm6]	A	G	1.336e^-5	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24174767	3R_24174767_SNP [dm3] 3R_28349045_SNP [dm6]	A	T	1.356e^-5	0.772	INTERGENIC
2R	6701537	2R_6701537_SNP [dm3] 2R_10814032_SNP [dm6]	C	A	1.360e^-5	0.772	SPLICE_SITE_REGION CG7222 UTR_5_PRIME CG7222 UPSTREAM CG12341	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10523777	2R_10523777_SNP [dm3] 2R_14636272_SNP [dm6]	T	A	1.366e^-5	0.772	INTERGENIC
2L	18774746	2L_18774746_SNP [dm3] 2L_18774746_SNP [dm6]	A	C	1.426e^-5	0.772	UPSTREAM CR43804 INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19174062	2L_19174062_SNP [dm3] 2L_19174062_SNP [dm6]	C	A	1.441e^-5	0.772	UTR_3_PRIME brat INTRON brat
3L	9604221	3L_9604221_SNP [dm3] 3L_9611121_SNP [dm6]	A	G	1.483e^-5	0.773	INTRON CG3280
X	7439736	X_7439736_SNP [dm3] X_7545703_SNP [dm6]	C	T	1.598e^-5	0.81	INTRON CG32719
2R	4512754	2R_4512754_SNP [dm3] 2R_8625249_SNP [dm6]	G	A	1.670e^-5	0.824	UPSTREAM Vps25 DOWNSTREAM beta3GalTII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	4512913	2R_4512913_INS [dm3] 2R_8625408_INS [dm6]	T	TT	1.790e^-5	0.838	UPSTREAM Vps25 DOWNSTREAM beta3GalTII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	6656459	2R_6656459_SNP [dm3] 2R_10768954_SNP [dm6]	C	T	1.883e^-5	0.838	INTRON CG33144
2R	10549540	2R_10549540_DEL [dm3] 2R_14662035_DEL [dm6]	GT	G	1.928e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13881108	X_13881108_SNP [dm3] X_13987075_SNP [dm6]	T	G	1.943e^-5	0.838	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13377128	3L_13377128_SNP [dm3] 3L_13384028_SNP [dm6]	A	G	1.977e^-5	0.838	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	24807531	3R_24807531_SNP [dm3] 3R_28981809_SNP [dm6]	C	G	2.074e^-5	0.838	INTERGENIC
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	2.109e^-5	0.838	INTRON AdipoR
2R	1594774	2R_1594774_SNP [dm3] 2R_5707269_SNP [dm6]	A	T	2.138e^-5	0.838	UTR_3_PRIME ap
2R	8489844	2R_8489844_SNP [dm3] 2R_12602339_SNP [dm6]	G	A	2.196e^-5	0.838	INTRON Amph
3R	15006339	3R_15006339_SNP [dm3] 3R_19180617_SNP [dm6]	C	T	2.196e^-5	0.838	UPSTREAM CG31475 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
3R	7772471	3R_7772471_SNP [dm3] 3R_11946749_SNP [dm6]	G	A	2.224e^-5	0.838	INTRON Cad87A
3R	9145428	3R_9145428_INS [dm3] 3R_13319706_INS [dm6]	T	TCGTGGTCTGGGTT...	2.281e^-5	0.838	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14380134	3L_14380134_SNP [dm3] 3L_14387034_SNP [dm6]	C	G	2.407e^-5	0.838	INTERGENIC
2R	2608528	2R_2608528_SNP [dm3] 2R_6721023_SNP [dm6]	T	C	2.413e^-5	0.838	DOWNSTREAM l_2_01289 INTERGENIC
3L	16415846	3L_16415846_SNP [dm3] 3L_16422746_SNP [dm6]	T	A	2.494e^-5	0.838	DOWNSTREAM dsx-c73A INTRON CG33158
X	2243135	X_2243135_SNP [dm3] X_2349102_SNP [dm6]	A	G	2.500e^-5	0.838	SYNONYMOUS_CODING ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26686962	3R_26686962_SNP [dm3] 3R_30861240_SNP [dm6]	G	A	2.516e^-5	0.838	INTERGENIC
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	2.656e^-5	0.838	INTERGENIC
2L	17390079	2L_17390079_SNP [dm3] 2L_17390079_SNP [dm6]	T	C	2.667e^-5	0.838	INTRON CLIP-190
2R	19271798	2R_19271798_SNP [dm3] 2R_23384275_SNP [dm6]	C	T	2.736e^-5	0.838	NON_SYNONYMOUS_CODING CG30414 UPSTREAM CG13551 DOWNSTREAM CR44784	TF binding site mE1_TFBS_chinmo
3L	18306627	3L_18306627_SNP [dm3] 3L_18313527_SNP [dm6]	C	T	2.777e^-5	0.838	INTERGENIC
3R	24157281	3R_24157281_SNP [dm3] 3R_28331559_SNP [dm6]	T	A	2.905e^-5	0.838	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16317313	2R_16317313_SNP [dm3] 2R_20429808_SNP [dm6]	A	C	2.956e^-5	0.838	INTRON CG12484
2R	2608520	2R_2608520_SNP [dm3] 2R_6721015_SNP [dm6]	G	A	2.959e^-5	0.838	DOWNSTREAM l_2_01289 INTERGENIC
X	12866005	X_12866005_SNP [dm3] X_12971972_SNP [dm6]	C	T	3.056e^-5	0.838	SYNONYMOUS_CODING CG15721 INTRON CR43636
3R	19249216	3R_19249216_SNP [dm3] 3R_23423494_SNP [dm6]	C	G	3.075e^-5	0.838	INTRON CG4374	TF binding site mE1_TFBS_HSA
3L	11269720	3L_11269720_SNP [dm3] 3L_11276620_SNP [dm6]	T	C	3.099e^-5	0.838	INTERGENIC
3L	17403615	3L_17403615_DEL [dm3] 3L_17410515_DEL [dm6]	AA	A	3.296e^-5	0.838	INTRON blot
2L	7722136	2L_7722136_SNP [dm3] 2L_7722136_SNP [dm6]	C	T	3.323e^-5	0.838	DOWNSTREAM CG13795 INTRON CG13794
3R	15362455	3R_15362455_SNP [dm3] 3R_19536733_SNP [dm6]	T	C	3.331e^-5	0.838	INTRON Dys
2L	19173589	2L_19173589_SNP [dm3] 2L_19173589_SNP [dm6]	A	C	3.468e^-5	0.838	UTR_3_PRIME brat INTRON brat
2R	18376983	2R_18376983_SNP [dm3] 2R_22489478_SNP [dm6]	A	G	3.499e^-5	0.838	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4004599	2L_4004599_SNP [dm3] 2L_4004599_SNP [dm6]	G	A	3.514e^-5	0.838	UPSTREAM CG15422 DOWNSTREAM CG34176 INTERGENIC
2R	2608499	2R_2608499_SNP [dm3] 2R_6720994_SNP [dm6]	A	T	3.525e^-5	0.838	DOWNSTREAM l_2_01289 INTERGENIC
2L	1852008	2L_1852008_SNP [dm3] 2L_1852008_SNP [dm6]	A	T	3.551e^-5	0.838	INTRON wry
3R	14647306	3R_14647306_SNP [dm3] 3R_18821584_SNP [dm6]	A	T	3.579e^-5	0.838	INTRON CG18208
X	13823848	X_13823848_SNP [dm3] X_13929815_SNP [dm6]	A	T	3.669e^-5	0.838	INTRON mamo
2L	22617465	2L_22617465_SNP [dm3] 2L_22724733_SNP [dm6]	A	C	3.730e^-5	0.838	INTRON CG40006
2R	16748030	2R_16748030_SNP [dm3] 2R_20860525_SNP [dm6]	A	G	3.941e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2852715	2L_2852715_SNP [dm3] 2L_2852715_SNP [dm6]	G	A	3.970e^-5	0.838	INTRON CG3104
3L	17405412	3L_17405412_SNP [dm3] 3L_17412312_SNP [dm6]	G	A	4.001e^-5	0.838	INTRON blot	TF binding site BDTNP1_TFBS_Med
3L	12928318	3L_12928318_SNP [dm3] 3L_12935218_SNP [dm6]	T	A	4.180e^-5	0.838	INTERGENIC
2L	18787123	2L_18787123_SNP [dm3] 2L_18787123_SNP [dm6]	C	A	4.221e^-5	0.838	INTRON ham	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16431147	X_16431147_SNP [dm3] X_16537114_SNP [dm6]	G	A	4.235e^-5	0.838	INTERGENIC
2R	2608584	2R_2608584_SNP [dm3] 2R_6721079_SNP [dm6]	A	T	4.302e^-5	0.838	DOWNSTREAM l_2_01289 INTERGENIC
3R	16129132	3R_16129132_SNP [dm3] 3R_20303410_SNP [dm6]	G	A	4.346e^-5	0.838	UTR_3_PRIME cic DOWNSTREAM CG4367
2R	2608489	2R_2608489_SNP [dm3] 2R_6720984_SNP [dm6]	C	T	4.413e^-5	0.838	DOWNSTREAM l_2_01289 INTERGENIC
X	16593332	X_16593332_SNP [dm3] X_16699299_SNP [dm6]	G	T	4.445e^-5	0.838	UTR_3_PRIME CG9676 INTRON CG4678
3L	11266967	3L_11266967_SNP [dm3] 3L_11273867_SNP [dm6]	A	T	4.453e^-5	0.838	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17457331	2R_17457331_SNP [dm3] 2R_21569826_SNP [dm6]	G	T	4.467e^-5	0.838	INTRON CG10440
2L	11029000	2L_11029000_SNP [dm3] 2L_11029000_SNP [dm6]	C	T	4.485e^-5	0.838	NON_SYNONYMOUS_CODING Samuel UTR_3_PRIME Samuel	TF binding site mE1_TFBS_cad
2R	18376731	2R_18376731_SNP [dm3] 2R_22489226_SNP [dm6]	T	G	4.533e^-5	0.838	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	4.638e^-5	0.838	INTRON AdipoR
3R	5025546	3R_5025546_SNP [dm3] 3R_9199824_SNP [dm6]	G	T	4.655e^-5	0.838	INTRON pum
3R	23154476	3R_23154476_SNP [dm3] 3R_27328754_SNP [dm6]	T	G	4.673e^-5	0.838	DOWNSTREAM CG3330 INTERGENIC
3R	24174734	3R_24174734_SNP [dm3] 3R_28349012_SNP [dm6]	T	C	4.774e^-5	0.838	INTERGENIC
X	13823840	X_13823840_SNP [dm3] X_13929807_SNP [dm6]	A	T	4.882e^-5	0.838	INTRON mamo
2R	8440284	2R_8440284_SNP [dm3] 2R_12552779_SNP [dm6]	A	T	4.960e^-5	0.838	INTRON fra
X	6542862	X_6542862_SNP [dm3] X_6648829_SNP [dm6]	C	T	4.979e^-5	0.838	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
3R	14677761	3R_14677761_SNP [dm3] 3R_18852039_SNP [dm6]	A	T	5.065e^-5	0.838	UPSTREAM CR45633 & 1 other INTERGENIC
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	5.194e^-5	0.838	INTRON sick
2R	6890642	2R_6890642_SNP [dm3] 2R_11003137_SNP [dm6]	G	C	5.307e^-5	0.838	INTRON luna
2R	8447017	2R_8447017_SNP [dm3] 2R_12559512_SNP [dm6]	C	T	5.426e^-5	0.838	INTRON fra
3L	8251379	3L_8251379_SNP [dm3] 3L_8258279_SNP [dm6]	T	A	5.530e^-5	0.838	INTRON Dscam4
2L	19853244	2L_19853244_DEL [dm3] 2L_19853244_DEL [dm6]	TTTTAT	T	5.539e^-5	0.838	INTRON sick
2L	19880241	2L_19880241_DEL [dm3] 2L_19880241_DEL [dm6]	TAAATGGCCT	T	5.540e^-5	0.838	INTRON sick
3R	20565879	3R_20565879_SNP [dm3] 3R_24740157_SNP [dm6]	T	G	5.553e^-5	0.838	INTRON tok
2R	6509693	2R_6509693_SNP [dm3] 2R_10622188_SNP [dm6]	G	T	5.642e^-5	0.838	UPSTREAM CG11883 INTRON CG11883
3R	23496173	3R_23496173_SNP [dm3] 3R_27670451_SNP [dm6]	C	T	5.704e^-5	0.838	SYNONYMOUS_CODING unc80
2R	6815590	2R_6815590_SNP [dm3] 2R_10928085_SNP [dm6]	C	T	5.995e^-5	0.838	INTERGENIC
X	13823847	X_13823847_SNP [dm3] X_13929814_SNP [dm6]	C	G	6.106e^-5	0.838	INTRON mamo
3R	14677764	3R_14677764_INS [dm3] 3R_18852042_INS [dm6]	GGCC	AATAT	6.158e^-5	0.838	UPSTREAM CR45633 & 1 other INTERGENIC
3L	14086051	3L_14086051_SNP [dm3] 3L_14092951_SNP [dm6]	T	C	6.263e^-5	0.838	INTERGENIC
3R	18059183	3R_18059183_SNP [dm3] 3R_22233461_SNP [dm6]	G	A	6.331e^-5	0.838	INTRON SKIP
3R	17889427	3R_17889427_SNP [dm3] 3R_22063705_SNP [dm6]	C	A	6.407e^-5	0.838	INTRON how
2L	16216057	2L_16216057_SNP [dm3] 2L_16216057_SNP [dm6]	G	A	6.428e^-5	0.838	DOWNSTREAM CR43840 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5926991	2L_5926991_SNP [dm3] 2L_5926991_SNP [dm6]	C	T	6.453e^-5	0.838	INTRON dsf
3R	14677756	3R_14677756_SNP [dm3] 3R_18852034_SNP [dm6]	T	A	6.515e^-5	0.838	UPSTREAM CR45633 & 1 other INTERGENIC
3L	13377129	3L_13377129_SNP [dm3] 3L_13384029_SNP [dm6]	C	G	6.548e^-5	0.838	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	10326226	X_10326226_SNP [dm3] X_10432193_SNP [dm6]	C	T	6.656e^-5	0.838	DOWNSTREAM CG12640 INTRON CG32683
2R	16728954	2R_16728954_SNP [dm3] 2R_20841449_SNP [dm6]	C	T	6.733e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18790447	2L_18790447_SNP [dm3] 2L_18790447_SNP [dm6]	T	C	6.754e^-5	0.838	INTRON ham	TF binding site mE1_TFBS_cad
2R	16451648	2R_16451648_SNP [dm3] 2R_20564143_SNP [dm6]	A	G	6.843e^-5	0.838	SYNONYMOUS_CODING qsm
3R	24157294	3R_24157294_SNP [dm3] 3R_28331572_SNP [dm6]	T	A	6.988e^-5	0.838	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15362171	3R_15362171_SNP [dm3] 3R_19536449_SNP [dm6]	C	T	7.009e^-5	0.838	INTRON Dys
3L	17752849	3L_17752849_SNP [dm3] 3L_17759749_SNP [dm6]	T	C	7.022e^-5	0.838	START_GAINED CG32181 UTR_5_PRIME CG32181 DOWNSTREAM CG32182 INTRON Adgf-A & 1 other
3R	19009049	3R_19009049_SNP [dm3] 3R_23183327_SNP [dm6]	A	C	7.052e^-5	0.838	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9022866	3R_9022866_INS [dm3] 3R_13197144_INS [dm6]	G	GGATCCCCTCG...	7.077e^-5	0.838	INTERGENIC
3R	7794857	3R_7794857_SNP [dm3] 3R_11969135_SNP [dm6]	A	C	7.128e^-5	0.838	INTRON GC1
X	16593374	X_16593374_SNP [dm3] X_16699341_SNP [dm6]	T	C	7.140e^-5	0.838	NON_SYNONYMOUS_CODING CG9676 INTRON CG4678
2L	18722493	2L_18722493_SNP [dm3] 2L_18722493_SNP [dm6]	G	A	7.179e^-5	0.838	INTRON CG10348
2L	20951898	2L_20951898_SNP [dm3] 2L_20951898_SNP [dm6]	A	C	7.202e^-5	0.838	INTERGENIC
2L	10008023	2L_10008023_SNP [dm3] 2L_10008023_SNP [dm6]	T	A	7.247e^-5	0.838	UTR_3_PRIME CG4747 DOWNSTREAM CG4747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17677090	X_17677090_SNP [dm3] X_17783057_SNP [dm6]	C	A	7.386e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16129108	3R_16129108_SNP [dm3] 3R_20303386_SNP [dm6]	G	A	7.483e^-5	0.838	UTR_3_PRIME cic DOWNSTREAM CG4367
3L	3861556	3L_3861556_SNP [dm3] 3L_3861556_SNP [dm6]	G	A	7.529e^-5	0.838	UTR_3_PRIME Awh
3R	21708575	3R_21708575_SNP [dm3] 3R_25882853_SNP [dm6]	A	T	7.648e^-5	0.838	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3R	21708584	3R_21708584_SNP [dm3] 3R_25882862_SNP [dm6]	A	T	7.648e^-5	0.838	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3L	18343150	3L_18343150_SNP [dm3] 3L_18350050_SNP [dm6]	A	T	7.712e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10560053	3L_10560053_SNP [dm3] 3L_10566953_SNP [dm6]	C	T	7.775e^-5	0.838	INTRON A2bp1	TF binding site mE1_TFBS_inv
2R	16324718	2R_16324718_SNP [dm3] 2R_20437213_SNP [dm6]	A	T	7.994e^-5	0.838	INTRON CG12484
2R	17648607	2R_17648607_SNP [dm3] 2R_21761102_SNP [dm6]	T	G	8.016e^-5	0.838	INTERGENIC
3L	22784076	3L_22784076_SNP [dm3] 3L_22790976_SNP [dm6]	T	A	8.068e^-5	0.838	UTR_3_PRIME jim
2R	9254307	2R_9254307_SNP [dm3] 2R_13366802_SNP [dm6]	A	G	8.077e^-5	0.838	INTERGENIC
3L	9543255	3L_9543255_DEL [dm3] 3L_9550155_DEL [dm6]	CTTTTG	A	8.083e^-5	0.838	INTRON CG42673
3R	21708536	3R_21708536_SNP [dm3] 3R_25882814_SNP [dm6]	A	G	8.086e^-5	0.838	INTRON SppL
3R	21708517	3R_21708517_SNP [dm3] 3R_25882795_SNP [dm6]	T	A	8.093e^-5	0.838	INTRON SppL
2R	17457328	2R_17457328_SNP [dm3] 2R_21569823_SNP [dm6]	C	T	8.182e^-5	0.838	INTRON CG10440
3L	10653465	3L_10653465_SNP [dm3] 3L_10660365_SNP [dm6]	T	G	8.224e^-5	0.838	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17982949	3L_17982949_SNP [dm3] 3L_17989849_SNP [dm6]	G	T	8.293e^-5	0.838	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13823830	X_13823830_SNP [dm3] X_13929797_SNP [dm6]	G	T	8.308e^-5	0.838	INTRON mamo
3R	7264890	3R_7264890_SNP [dm3] 3R_11439168_SNP [dm6]	C	G	8.343e^-5	0.838	INTRON CG17230 & 1 other
3L	5064879	3L_5064879_SNP [dm3] 3L_5064879_SNP [dm6]	T	G	8.346e^-5	0.838	INTRON Con
3R	15003578	3R_15003578_SNP [dm3] 3R_19177856_SNP [dm6]	G	A	8.365e^-5	0.838	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad
2R	20318271	2R_20318271_SNP [dm3] 2R_24430748_SNP [dm6]	C	A	8.408e^-5	0.838	UPSTREAM CG15873 DOWNSTREAM Pgam5-2 INTERGENIC
3L	14343568	3L_14343568_SNP [dm3] 3L_14350468_SNP [dm6]	A	T	8.435e^-5	0.838	INTRON fz
2R	10954368	2R_10954368_SNP [dm3] 2R_15066863_SNP [dm6]	A	G	8.451e^-5	0.838	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14930618	2R_14930618_SNP [dm3] 2R_19043113_SNP [dm6]	A	C	8.460e^-5	0.838	INTERGENIC
3R	26610457	3R_26610457_SNP [dm3] 3R_30784735_SNP [dm6]	C	T	8.511e^-5	0.838	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2803627	2L_2803627_SNP [dm3] 2L_2803627_SNP [dm6]	C	A	8.539e^-5	0.838	INTERGENIC
3L	17093022	3L_17093022_SNP [dm3] 3L_17099922_SNP [dm6]	G	C	8.558e^-5	0.838	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10527309	3L_10527309_SNP [dm3] 3L_10534209_SNP [dm6]	C	T	8.659e^-5	0.838	INTRON A2bp1
2R	17457337	2R_17457337_SNP [dm3] 2R_21569832_SNP [dm6]	A	T	8.780e^-5	0.838	INTRON CG10440
2L	19156577	2L_19156577_SNP [dm3] 2L_19156577_SNP [dm6]	C	T	8.787e^-5	0.838	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19378459	3R_19378459_SNP [dm3] 3R_23552737_SNP [dm6]	G	A	8.880e^-5	0.838	INTERGENIC
X	16593323	X_16593323_SNP [dm3] X_16699290_SNP [dm6]	T	C	8.906e^-5	0.838	UTR_3_PRIME CG9676 INTRON CG4678
2R	6438573	2R_6438573_SNP [dm3] 2R_10551068_SNP [dm6]	T	C	8.935e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14930622	2R_14930622_SNP [dm3] 2R_19043117_SNP [dm6]	A	G	8.981e^-5	0.838	INTERGENIC
2R	6151030	2R_6151030_DEL [dm3] 2R_10263525_DEL [dm6]	GAATGAAGAATATT...	G	9.111e^-5	0.838	EXON CR30009	TF binding site mE1_TFBS_HSA
3L	10513703	3L_10513703_SNP [dm3] 3L_10520603_SNP [dm6]	T	C	9.128e^-5	0.838	INTRON A2bp1
3L	18612182	3L_18612182_SNP [dm3] 3L_18619082_SNP [dm6]	A	T	9.139e^-5	0.838	UTR_3_PRIME not DOWNSTREAM tRNA:CR32200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	15108567	2R_15108567_SNP [dm3] 2R_19221062_SNP [dm6]	G	T	9.157e^-5	0.838	INTRON hppy
2L	12289618	2L_12289618_SNP [dm3] 2L_12289618_SNP [dm6]	A	T	9.164e^-5	0.838	INTRON aret
2R	20318270	2R_20318270_SNP [dm3] 2R_24430747_SNP [dm6]	C	T	9.172e^-5	0.838	UPSTREAM CG15873 DOWNSTREAM Pgam5-2 INTERGENIC
2R	6203064	2R_6203064_INS [dm3] 2R_10315559_INS [dm6]	T	TC	9.185e^-5	0.838	INTRON Ndg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24437651	3R_24437651_SNP [dm3] 3R_28611929_SNP [dm6]	G	A	9.237e^-5	0.838	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6151023	2R_6151023_SNP [dm3] 2R_10263518_SNP [dm6]	T	A	9.265e^-5	0.838	EXON CR30009	TF binding site mE1_TFBS_HSA
X	16164166	X_16164166_SNP [dm3] X_16270133_SNP [dm6]	A	G	9.282e^-5	0.838	UPSTREAM Mfe2 INTRON kat80	TF binding site mE1_TFBS_bab1
3R	9145404	3R_9145404_SNP [dm3] 3R_13319682_SNP [dm6]	G	T	9.330e^-5	0.838	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24773227	3R_24773227_SNP [dm3] 3R_28947505_SNP [dm6]	G	A	9.382e^-5	0.838	INTRON CG14521
X	13823828	X_13823828_INS [dm3] X_13929795_INS [dm6]	T	TAAGTTTTATACT...	9.427e^-5	0.838	INTRON mamo
X	13823836	X_13823836_DEL [dm3] X_13929803_DEL [dm6]	GAA	T	9.427e^-5	0.838	INTRON mamo
3R	16702824	3R_16702824_SNP [dm3] 3R_20877102_SNP [dm6]	A	C	9.510e^-5	0.838	UPSTREAM TotZ INTERGENIC
2R	20778565	2R_20778565_SNP [dm3] 2R_24891042_SNP [dm6]	G	A	9.512e^-5	0.838	UPSTREAM NaCP60E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16680382	2R_16680382_SNP [dm3] 2R_20792877_SNP [dm6]	A	G	9.533e^-5	0.838	UPSTREAM CG15225 & 1 other INTERGENIC
2R	6775970	2R_6775970_SNP [dm3] 2R_10888465_SNP [dm6]	C	T	9.555e^-5	0.838	SPLICE_SITE_REGION CG30020 INTRON CG30020	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9145392	3R_9145392_SNP [dm3] 3R_13319670_SNP [dm6]	A	T	9.692e^-5	0.838	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	23469961	3R_23469961_SNP [dm3] 3R_27644239_SNP [dm6]	T	G	9.738e^-5	0.838	INTRON tau
X	13823844	X_13823844_SNP [dm3] X_13929811_SNP [dm6]	T	A	9.741e^-5	0.838	INTRON mamo
2R	6815775	2R_6815775_SNP [dm3] 2R_10928270_SNP [dm6]	T	A	9.843e^-5	0.838	INTERGENIC
3L	14343501	3L_14343501_SNP [dm3] 3L_14350401_SNP [dm6]	G	T	9.943e^-5	0.838	INTRON fz
3R	14663621	3R_14663621_SNP [dm3] 3R_18837899_SNP [dm6]	A	G	9.995e^-5	0.838	INTRON CG18208
2R	6438608	2R_6438608_SNP [dm3] 2R_10551103_SNP [dm6]	G	A	9.996e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16429266	X_16429266_INS [dm3] X_16535233_INS [dm6]	C	CACT	1.000e^-4	0.838	INTERGENIC
3L	1575193	3L_1575193_SNP [dm3] 3L_1575193_SNP [dm6]	C	T	1.007e^-4	0.838	SYNONYMOUS_CODING CG12004 DOWNSTREAM CG12004
2L	1712031	2L_1712031_SNP [dm3] 2L_1712031_SNP [dm6]	G	T	1.008e^-4	0.838	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16593337	X_16593337_DEL [dm3] X_16699304_DEL [dm6]	CC	C	1.008e^-4	0.838	UTR_3_PRIME CG9676 INTRON CG4678
2R	6438599	2R_6438599_SNP [dm3] 2R_10551094_SNP [dm6]	G	T	1.008e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6438572	2R_6438572_SNP [dm3] 2R_10551067_SNP [dm6]	T	A	1.016e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27277871	3R_27277871_SNP [dm3] 3R_31452149_SNP [dm6]	A	G	1.019e^-4	0.838	INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	9503690	2L_9503690_SNP [dm3] 2L_9503690_SNP [dm6]	A	G	1.029e^-4	0.838	UTR_5_PRIME CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19158962	2L_19158962_SNP [dm3] 2L_19158962_SNP [dm6]	C	A	1.033e^-4	0.838	INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19165841	2L_19165841_SNP [dm3] 2L_19165841_SNP [dm6]	C	A	1.038e^-4	0.838	UPSTREAM brat INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_ttk
2R	15327382	2R_15327382_SNP [dm3] 2R_19439877_SNP [dm6]	G	A	1.041e^-4	0.838	SPLICE_SITE_REGION Spt5 INTRON Spt5	TF binding site mE1_TFBS_sens
2R	9686919	2R_9686919_SNP [dm3] 2R_13799414_SNP [dm6]	G	T	1.043e^-4	0.838	INTRON Cpr50Cb
2R	6359344	2R_6359344_SNP [dm3] 2R_10471839_SNP [dm6]	C	T	1.044e^-4	0.838	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20318279	2R_20318279_DEL [dm3] 2R_24430756_DEL [dm6]	CTGCTGATTAAGGCTGATTA...	TGGCTGATTAGGG...	1.052e^-4	0.838	UPSTREAM CG15873 DOWNSTREAM Pgam5-2 INTERGENIC
3R	11739363	3R_11739363_SNP [dm3] 3R_15913641_SNP [dm6]	C	T	1.054e^-4	0.838	SYNONYMOUS_CODING CG45105 UTR_3_PRIME CG45105 INTRON CG45105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	20994170	2R_20994170_DEL [dm3] 2R_25106647_DEL [dm6]	TT	T	1.055e^-4	0.838	INTRON lov
2L	18787228	2L_18787228_SNP [dm3] 2L_18787228_SNP [dm6]	C	T	1.068e^-4	0.838	UTR_5_PRIME ham INTRON ham	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5025564	3R_5025564_SNP [dm3] 3R_9199842_SNP [dm6]	T	A	1.073e^-4	0.838	INTRON pum
3L	14894480	3L_14894480_SNP [dm3] 3L_14901380_SNP [dm6]	G	A	1.078e^-4	0.838	INTERGENIC
2R	20821044	2R_20821044_INS [dm3] 2R_24933521_INS [dm6]	T	TTTTTCTACTTATTCAGATC...	1.084e^-4	0.838	INTRON CG30427
2R	20821054	2R_20821054_SNP [dm3] 2R_24933531_SNP [dm6]	A	G	1.084e^-4	0.838	INTRON CG30427
3L	5064906	3L_5064906_SNP [dm3] 3L_5064906_SNP [dm6]	T	A	1.088e^-4	0.838	INTRON Con
3R	13202531	3R_13202531_SNP [dm3] 3R_17376809_SNP [dm6]	C	T	1.092e^-4	0.838	INTRON Brf
X	7893476	X_7893476_SNP [dm3] X_7999443_SNP [dm6]	T	C	1.096e^-4	0.838	NON_SYNONYMOUS_CODING Tbh
3L	9062085	3L_9062085_SNP [dm3] 3L_9068985_SNP [dm6]	A	C	1.102e^-4	0.838	UTR_3_PRIME CG4911 DOWNSTREAM CG4911
2L	5926992	2L_5926992_SNP [dm3] 2L_5926992_SNP [dm6]	T	A	1.105e^-4	0.838	INTRON dsf
2R	15327318	2R_15327318_SNP [dm3] 2R_19439813_SNP [dm6]	T	C	1.107e^-4	0.838	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16637332	3L_16637332_SNP [dm3] 3L_16644232_SNP [dm6]	T	G	1.117e^-4	0.838	INTRON Abl	TF binding site BDTNP1_TFBS_dl
2L	9346044	2L_9346044_SNP [dm3] 2L_9346044_SNP [dm6]	C	T	1.117e^-4	0.838	INTERGENIC
3R	12244653	3R_12244653_SNP [dm3] 3R_16418931_SNP [dm6]	T	C	1.120e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	17166271	3L_17166271_SNP [dm3] 3L_17173171_SNP [dm6]	T	G	1.130e^-4	0.838	INTRON Rbp6
X	13823832	X_13823832_SNP [dm3] X_13929799_SNP [dm6]	G	T	1.133e^-4	0.838	INTRON mamo
2L	4938201	2L_4938201_SNP [dm3] 2L_4938201_SNP [dm6]	A	T	1.136e^-4	0.838	SYNONYMOUS_CODING Sgs1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18310970	3L_18310970_SNP [dm3] 3L_18317870_SNP [dm6]	C	G	1.138e^-4	0.838	INTERGENIC
3R	25694164	3R_25694164_SNP [dm3] 3R_29868442_SNP [dm6]	T	A	1.139e^-4	0.838	UPSTREAM Zip99C & 1 other INTRON Zip99C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	17374412	X_17374412_SNP [dm3] X_17480379_SNP [dm6]	A	C	1.141e^-4	0.838	INTRON CG43658
3L	12930842	3L_12930842_INS [dm3] 3L_12937742_INS [dm6]	T	TTT	1.146e^-4	0.838	INTERGENIC
3R	14266369	3R_14266369_SNP [dm3] 3R_18440647_SNP [dm6]	A	G	1.149e^-4	0.838	INTRON fru
3R	15008984	3R_15008984_SNP [dm3] 3R_19183262_SNP [dm6]	G	T	1.149e^-4	0.838	INTRON CG31475
2R	15193475	2R_15193475_SNP [dm3] 2R_19305970_SNP [dm6]	G	A	1.151e^-4	0.838	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13377082	3L_13377082_SNP [dm3] 3L_13383982_SNP [dm6]	G	T	1.164e^-4	0.838	UTR_3_PRIME ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3L	14343578	3L_14343578_SNP [dm3] 3L_14350478_SNP [dm6]	C	T	1.184e^-4	0.838	INTRON fz
3L	16648748	3L_16648748_SNP [dm3] 3L_16655648_SNP [dm6]	A	T	1.187e^-4	0.838	INTRON Baldspot
3R	9056176	3R_9056176_SNP [dm3] 3R_13230454_SNP [dm6]	A	T	1.189e^-4	0.838	INTRON Ace
3R	21708537	3R_21708537_SNP [dm3] 3R_25882815_SNP [dm6]	A	T	1.194e^-4	0.838	INTRON SppL
2L	18822067	2L_18822067_SNP [dm3] 2L_18822067_SNP [dm6]	C	T	1.195e^-4	0.838	SYNONYMOUS_CODING CG17324
3R	25166509	3R_25166509_SNP [dm3] 3R_29340787_SNP [dm6]	G	A	1.204e^-4	0.838	INTERGENIC
2L	18789057	2L_18789057_DEL [dm3] 2L_18789057_DEL [dm6]	ATCGAA	A	1.211e^-4	0.838	INTRON ham	TF binding site mE1_TFBS_cad
3R	21744544	3R_21744544_SNP [dm3] 3R_25918822_SNP [dm6]	C	T	1.212e^-4	0.838	SYNONYMOUS_CODING CG42235 INTRON CG42235
2R	17457344	2R_17457344_SNP [dm3] 2R_21569839_SNP [dm6]	T	G	1.218e^-4	0.838	INTRON CG10440
2L	7368184	2L_7368184_SNP [dm3] 2L_7368184_SNP [dm6]	T	G	1.222e^-4	0.838	INTRON Wnt10
3L	10560982	3L_10560982_SNP [dm3] 3L_10567882_SNP [dm6]	A	G	1.223e^-4	0.838	INTRON A2bp1
X	7771749	X_7771749_SNP [dm3] X_7877716_SNP [dm6]	A	G	1.226e^-4	0.838	SYNONYMOUS_CODING Ir7d DOWNSTREAM Ir7c
2R	16410211	2R_16410211_SNP [dm3] 2R_20522706_SNP [dm6]	C	T	1.228e^-4	0.838	INTERGENIC
3L	12092984	3L_12092984_SNP [dm3] 3L_12099884_SNP [dm6]	T	A	1.228e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13433069	3R_13433069_SNP [dm3] 3R_17607347_SNP [dm6]	T	G	1.229e^-4	0.838	SYNONYMOUS_CODING sll	TF binding site mE1_TFBS_sens
2L	16161351	2L_16161351_SNP [dm3] 2L_16161351_SNP [dm6]	T	C	1.235e^-4	0.838	INTERGENIC
2R	15241290	2R_15241290_SNP [dm3] 2R_19353785_SNP [dm6]	A	G	1.238e^-4	0.838	INTRON Rgk1
2R	6203067	2R_6203067_SNP [dm3] 2R_10315562_SNP [dm6]	A	T	1.250e^-4	0.838	INTRON Ndg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18854575	2R_18854575_SNP [dm3] 2R_22967052_SNP [dm6]	A	T	1.251e^-4	0.838	INTERGENIC
2R	6496990	2R_6496990_SNP [dm3] 2R_10609485_SNP [dm6]	A	T	1.253e^-4	0.838	INTRON psq
3L	14086035	3L_14086035_SNP [dm3] 3L_14092935_SNP [dm6]	C	T	1.254e^-4	0.838	INTERGENIC
X	18461471	X_18461471_SNP [dm3] X_18567438_SNP [dm6]	A	G	1.255e^-4	0.838	INTRON Bx
3L	17367595	3L_17367595_SNP [dm3] 3L_17374495_SNP [dm6]	C	T	1.261e^-4	0.838	INTRON Cad74A
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	1.268e^-4	0.838	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13377100	3L_13377100_SNP [dm3] 3L_13384000_SNP [dm6]	A	T	1.269e^-4	0.838	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	26876979	3R_26876979_SNP [dm3] 3R_31051257_SNP [dm6]	C	T	1.270e^-4	0.838	SYNONYMOUS_CODING Aph-4 UPSTREAM mir-4948	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7754230	3L_7754230_DEL [dm3] 3L_7761130_DEL [dm6]	AC	A	1.274e^-4	0.838	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2R	15897440	2R_15897440_SNP [dm3] 2R_20009935_SNP [dm6]	A	G	1.290e^-4	0.838	INTERGENIC
3R	25694208	3R_25694208_SNP [dm3] 3R_29868486_SNP [dm6]	G	A	1.291e^-4	0.838	UPSTREAM Zip99C & 1 other INTRON Zip99C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_sens
3R	20820690	3R_20820690_DEL [dm3] 3R_24994968_DEL [dm6]	AGAGCTTCA	A	1.302e^-4	0.838	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18823938	2L_18823938_SNP [dm3] 2L_18823938_SNP [dm6]	G	T	1.302e^-4	0.838	INTRON CG17323
3R	13920951	3R_13920951_SNP [dm3] 3R_18095229_SNP [dm6]	T	A	1.304e^-4	0.838	INTRON sr
X	7439606	X_7439606_SNP [dm3] X_7545573_SNP [dm6]	A	G	1.313e^-4	0.838	INTRON CG32719
3R	22652689	3R_22652689_SNP [dm3] 3R_26826967_SNP [dm6]	A	T	1.314e^-4	0.838	INTRON Tl
2R	19373764	2R_19373764_SNP [dm3] 2R_23486241_SNP [dm6]	G	C	1.316e^-4	0.838	INTRON CG43795
X	20859149	X_20859149_SNP [dm3] X_20988122_SNP [dm6]	C	T	1.320e^-4	0.838	INTERGENIC
3R	19378416	3R_19378416_SNP [dm3] 3R_23552694_SNP [dm6]	G	A	1.321e^-4	0.838	INTERGENIC
2R	16111817	2R_16111817_SNP [dm3] 2R_20224312_SNP [dm6]	C	A	1.330e^-4	0.838	INTERGENIC
3R	15206957	3R_15206957_SNP [dm3] 3R_19381235_SNP [dm6]	C	A	1.331e^-4	0.838	INTRON Ino80
X	16347729	X_16347729_SNP [dm3] X_16453696_SNP [dm6]	G	C	1.335e^-4	0.838	UTR_3_PRIME Rbp2 DOWNSTREAM Rbp2
3L	16415856	3L_16415856_SNP [dm3] 3L_16422756_SNP [dm6]	T	A	1.337e^-4	0.838	DOWNSTREAM dsx-c73A INTRON CG33158
3R	18059354	3R_18059354_SNP [dm3] 3R_22233632_SNP [dm6]	C	G	1.337e^-4	0.838	INTRON SKIP
3R	26610383	3R_26610383_SNP [dm3] 3R_30784661_SNP [dm6]	T	G	1.343e^-4	0.838	NON_SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11673619	3L_11673619_SNP [dm3] 3L_11680519_SNP [dm6]	T	C	1.344e^-4	0.838	UPSTREAM CG32085 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15008986	3R_15008986_SNP [dm3] 3R_19183264_SNP [dm6]	A	G	1.348e^-4	0.838	INTRON CG31475
3L	715018	3L_715018_SNP [dm3] 3L_715018_SNP [dm6]	G	A	1.355e^-4	0.838	UPSTREAM CR45411 INTERGENIC
X	16429889	X_16429889_SNP [dm3] X_16535856_SNP [dm6]	T	A	1.356e^-4	0.838	INTERGENIC
3L	16415857	3L_16415857_SNP [dm3] 3L_16422757_SNP [dm6]	A	T	1.357e^-4	0.838	DOWNSTREAM dsx-c73A INTRON CG33158
3R	14611594	3R_14611594_SNP [dm3] 3R_18785872_SNP [dm6]	A	C	1.365e^-4	0.838	INTRON CG7720
2R	20224971	2R_20224971_SNP [dm3] 2R_24337448_SNP [dm6]	T	G	1.370e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	18192665	X_18192665_SNP [dm3] X_18298632_SNP [dm6]	C	G	1.371e^-4	0.838	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8251343	3L_8251343_SNP [dm3] 3L_8258243_SNP [dm6]	G	A	1.372e^-4	0.838	INTRON Dscam4
2R	17457336	2R_17457336_SNP [dm3] 2R_21569831_SNP [dm6]	A	T	1.375e^-4	0.838	INTRON CG10440
2L	11935125	2L_11935125_SNP [dm3] 2L_11935125_SNP [dm6]	G	A	1.375e^-4	0.838	SYNONYMOUS_CODING Or33a
3L	14343502	3L_14343502_SNP [dm3] 3L_14350402_SNP [dm6]	A	G	1.377e^-4	0.838	INTRON fz
2R	16324666	2R_16324666_SNP [dm3] 2R_20437161_SNP [dm6]	C	G	1.390e^-4	0.838	INTRON CG12484
2L	9212095	2L_9212095_SNP [dm3] 2L_9212095_SNP [dm6]	C	A	1.391e^-4	0.838	INTRON tai	TF binding site BDTNP1_TFBS_dl
3R	24377456	3R_24377456_SNP [dm3] 3R_28551734_SNP [dm6]	C	T	1.394e^-4	0.838	INTERGENIC
3R	18084228	3R_18084228_SNP [dm3] 3R_22258506_SNP [dm6]	G	A	1.410e^-4	0.838	INTRON SKIP
3L	14343510	3L_14343510_DEL [dm3] 3L_14350410_DEL [dm6]	TAGATCTCTAACACGTTT...	T	1.410e^-4	0.838	INTRON fz
3L	7754146	3L_7754146_SNP [dm3] 3L_7761046_SNP [dm6]	A	G	1.419e^-4	0.838	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2R	6743125	2R_6743125_SNP [dm3] 2R_10855620_SNP [dm6]	T	C	1.422e^-4	0.838	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	1569741	2L_1569741_DEL [dm3] 2L_1569741_DEL [dm6]	ATATTG	A	1.423e^-4	0.838	INTRON haf
X	6387623	X_6387623_SNP [dm3] X_6493590_SNP [dm6]	A	T	1.431e^-4	0.838	INTRON CG42340
X	7768866	X_7768866_SNP [dm3] X_7874833_SNP [dm6]	A	C	1.433e^-4	0.838	NON_SYNONYMOUS_CODING Ir7c
2R	8534423	2R_8534423_SNP [dm3] 2R_12646918_SNP [dm6]	T	A	1.433e^-4	0.838	INTRON CG8785
2R	12608377	2R_12608377_SNP [dm3] 2R_16720872_SNP [dm6]	A	G	1.455e^-4	0.838	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2611840	2R_2611840_SNP [dm3] 2R_6724335_SNP [dm6]	G	C	1.468e^-4	0.838	INTRON l_2_01289
3L	11116328	3L_11116328_SNP [dm3] 3L_11123228_SNP [dm6]	G	T	1.474e^-4	0.838	UPSTREAM CG42575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18809912	2L_18809912_SNP [dm3] 2L_18809912_SNP [dm6]	T	A	1.479e^-4	0.838	UTR_3_PRIME CG10570 & 1 other DOWNSTREAM CG10570 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	18790819	2L_18790819_SNP [dm3] 2L_18790819_SNP [dm6]	C	T	1.481e^-4	0.838	INTRON ham	TF binding site mE1_TFBS_cad
3L	683870	3L_683870_SNP [dm3] 3L_683870_SNP [dm6]	T	C	1.483e^-4	0.838	SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	8325619	2L_8325619_SNP [dm3] 2L_8325619_SNP [dm6]	T	C	1.485e^-4	0.838	UPSTREAM CG7781 INTERGENIC
2R	20790407	2R_20790407_SNP [dm3] 2R_24902884_SNP [dm6]	C	A	1.491e^-4	0.838	DOWNSTREAM RpL41 INTRON NaCP60E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19009084	3R_19009084_SNP [dm3] 3R_23183362_SNP [dm6]	G	A	1.493e^-4	0.838	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22245491	3R_22245491_SNP [dm3] 3R_26419769_SNP [dm6]	A	T	1.494e^-4	0.838	INTERGENIC
2R	8440751	2R_8440751_SNP [dm3] 2R_12553246_SNP [dm6]	C	T	1.498e^-4	0.838	INTRON fra
2R	13227110	2R_13227110_SNP [dm3] 2R_17339605_SNP [dm6]	G	T	1.498e^-4	0.838	INTRON mbl
3L	21910242	3L_21910242_SNP [dm3] 3L_21917142_SNP [dm6]	C	T	1.512e^-4	0.838	INTRON mub	TF binding site mE1_TFBS_Trl
3R	14040169	3R_14040169_SNP [dm3] 3R_18214447_SNP [dm6]	C	A	1.516e^-4	0.838	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14343571	3L_14343571_SNP [dm3] 3L_14350471_SNP [dm6]	T	G	1.533e^-4	0.838	INTRON fz
3R	26878052	3R_26878052_SNP [dm3] 3R_31052330_SNP [dm6]	A	G	1.534e^-4	0.838	NON_SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670
3R	19571845	3R_19571845_SNP [dm3] 3R_23746123_SNP [dm6]	A	T	1.538e^-4	0.838	INTRON Hmgcr	TF binding site mE1_TFBS_cad
3L	18542026	3L_18542026_SNP [dm3] 3L_18548926_SNP [dm6]	G	A	1.539e^-4	0.838	INTERGENIC
3R	24920324	3R_24920324_SNP [dm3] 3R_29094602_SNP [dm6]	A	G	1.541e^-4	0.838	UPSTREAM CR45030 INTRON CG11873
2L	3117165	2L_3117165_SNP [dm3] 2L_3117165_SNP [dm6]	A	G	1.541e^-4	0.838	INTRON toc
2R	10523797	2R_10523797_SNP [dm3] 2R_14636292_SNP [dm6]	T	C	1.547e^-4	0.838	INTERGENIC
3L	16705013	3L_16705013_DEL [dm3] 3L_16711913_DEL [dm6]	TACCCTTGGTA...	T	1.548e^-4	0.838	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	11324221	2L_11324221_SNP [dm3] 2L_11324221_SNP [dm6]	T	C	1.553e^-4	0.838	INTERGENIC
X	19194814	X_19194814_SNP [dm3] X_19300781_SNP [dm6]	C	T	1.558e^-4	0.838	DOWNSTREAM CG8051 & 1 other INTERGENIC
3L	10530398	3L_10530398_SNP [dm3] 3L_10537298_SNP [dm6]	C	A	1.560e^-4	0.838	INTRON A2bp1
2R	6743117	2R_6743117_SNP [dm3] 2R_10855612_SNP [dm6]	A	T	1.560e^-4	0.838	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	26029300	3R_26029300_SNP [dm3] 3R_30203578_SNP [dm6]	A	G	1.563e^-4	0.838	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16705025	3L_16705025_SNP [dm3] 3L_16711925_SNP [dm6]	A	T	1.564e^-4	0.838	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11330547	3L_11330547_SNP [dm3] 3L_11337447_SNP [dm6]	G	A	1.583e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_sens
2R	17082366	2R_17082366_SNP [dm3] 2R_21194861_SNP [dm6]	A	G	1.587e^-4	0.838	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24569985	3R_24569985_SNP [dm3] 3R_28744263_SNP [dm6]	G	A	1.590e^-4	0.838	UTR_5_PRIME AstA-R2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11617744	3L_11617744_SNP [dm3] 3L_11624644_SNP [dm6]	C	G	1.593e^-4	0.838	UTR_3_PRIME CG6083 UPSTREAM CG6084
2L	9346013	2L_9346013_SNP [dm3] 2L_9346013_SNP [dm6]	T	C	1.598e^-4	0.838	INTERGENIC
2R	12815078	2R_12815078_SNP [dm3] 2R_16927573_SNP [dm6]	T	A	1.598e^-4	0.838	INTRON Pkc53E
3L	13341327	3L_13341327_SNP [dm3] 3L_13348227_SNP [dm6]	A	C	1.602e^-4	0.838	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11330564	3L_11330564_SNP [dm3] 3L_11337464_SNP [dm6]	C	T	1.611e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_sens
3R	15003401	3R_15003401_SNP [dm3] 3R_19177679_SNP [dm6]	G	A	1.621e^-4	0.838	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8451694	2R_8451694_SNP [dm3] 2R_12564189_SNP [dm6]	C	T	1.629e^-4	0.838	DOWNSTREAM CG33775 & 1 other INTERGENIC
X	7591890	X_7591890_SNP [dm3] X_7697857_SNP [dm6]	T	G	1.630e^-4	0.838	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10326282	X_10326282_INS [dm3] X_10432249_INS [dm6]	A	AT	1.630e^-4	0.838	DOWNSTREAM CG12640 INTRON CG32683
2L	3176405	2L_3176405_SNP [dm3] 2L_3176405_SNP [dm6]	G	T	1.633e^-4	0.838	INTRON CG34393
3L	22784338	3L_22784338_SNP [dm3] 3L_22791238_SNP [dm6]	C	G	1.636e^-4	0.838	UTR_3_PRIME jim
X	16021599	X_16021599_SNP [dm3] X_16127566_SNP [dm6]	A	C	1.647e^-4	0.838	INTRON disco-r
3R	24377473	3R_24377473_SNP [dm3] 3R_28551751_SNP [dm6]	A	G	1.651e^-4	0.838	INTERGENIC
2R	17457359	2R_17457359_SNP [dm3] 2R_21569854_SNP [dm6]	T	C	1.652e^-4	0.838	INTRON CG10440
3L	22469585	3L_22469585_SNP [dm3] 3L_22476485_SNP [dm6]	T	C	1.656e^-4	0.838	DOWNSTREAM CG11425 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20851799	2R_20851799_SNP [dm3] 2R_24964276_SNP [dm6]	A	T	1.660e^-4	0.838	DOWNSTREAM CG30424 INTRON CG2765	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	18380008	3R_18380008_SNP [dm3] 3R_22554286_SNP [dm6]	T	A	1.664e^-4	0.838	UPSTREAM bond INTRON bond
X	8731098	X_8731098_SNP [dm3] X_8837065_SNP [dm6]	A	T	1.666e^-4	0.838	DOWNSTREAM CR45537 INTERGENIC
2L	16422189	2L_16422189_SNP [dm3] 2L_16422189_SNP [dm6]	T	C	1.671e^-4	0.838	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17457332	2R_17457332_SNP [dm3] 2R_21569827_SNP [dm6]	T	C	1.673e^-4	0.838	INTRON CG10440
X	16429834	X_16429834_SNP [dm3] X_16535801_SNP [dm6]	G	T	1.686e^-4	0.838	INTERGENIC
3R	11998327	3R_11998327_SNP [dm3] 3R_16172605_SNP [dm6]	C	T	1.690e^-4	0.838	DOWNSTREAM CG6006 INTRON CG8925
3L	10527445	3L_10527445_SNP [dm3] 3L_10534345_SNP [dm6]	T	G	1.695e^-4	0.838	INTRON A2bp1
3L	14086006	3L_14086006_SNP [dm3] 3L_14092906_SNP [dm6]	C	A	1.698e^-4	0.838	INTERGENIC
3L	14476248	3L_14476248_SNP [dm3] 3L_14483148_SNP [dm6]	T	G	1.702e^-4	0.838	INTRON bbg
2L	11930507	2L_11930507_SNP [dm3] 2L_11930507_SNP [dm6]	C	T	1.710e^-4	0.838	INTERGENIC
3L	8707511	3L_8707511_SNP [dm3] 3L_8714411_SNP [dm6]	A	C	1.716e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
2R	20830650	2R_20830650_SNP [dm3] 2R_24943127_SNP [dm6]	A	T	1.717e^-4	0.838	UPSTREAM Tina-1 DOWNSTREAM CG15861 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2626436	2R_2626436_SNP [dm3] 2R_6738931_SNP [dm6]	A	G	1.717e^-4	0.838	INTRON l_2_01289
2L	11852216	2L_11852216_SNP [dm3] 2L_11852216_SNP [dm6]	A	C	1.728e^-4	0.838	NON_SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
3L	10560831	3L_10560831_SNP [dm3] 3L_10567731_SNP [dm6]	G	A	1.729e^-4	0.838	INTRON A2bp1
3R	7306310	3R_7306310_SNP [dm3] 3R_11480588_SNP [dm6]	T	C	1.733e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19009096	3R_19009096_SNP [dm3] 3R_23183374_SNP [dm6]	T	C	1.738e^-4	0.838	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15193499	2R_15193499_SNP [dm3] 2R_19305994_SNP [dm6]	G	A	1.738e^-4	0.838	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15003084	3R_15003084_SNP [dm3] 3R_19177362_SNP [dm6]	A	G	1.740e^-4	0.838	NON_SYNONYMOUS_CODING CG14282 DOWNSTREAM CG5555	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14361405	3L_14361405_INS [dm3] 3L_14368305_INS [dm6]	A	ACA	1.745e^-4	0.838	UTR_3_PRIME fz DOWNSTREAM CG13481
3L	10743950	3L_10743950_DEL [dm3] 3L_10750850_DEL [dm6]	AG	T	1.754e^-4	0.838	INTERGENIC
2L	11120643	2L_11120643_INS [dm3] 2L_11120643_INS [dm6]	C	CGC	1.755e^-4	0.838	UTR_3_PRIME CG14921 UPSTREAM CG6230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19315951	2R_19315951_SNP [dm3] 2R_23428428_SNP [dm6]	T	G	1.765e^-4	0.838	INTRON CG9815
3L	3285014	3L_3285014_SNP [dm3] 3L_3285014_SNP [dm6]	G	C	1.770e^-4	0.838	INTRON CG12017
2L	12525351	2L_12525351_SNP [dm3] 2L_12525351_SNP [dm6]	A	T	1.770e^-4	0.838	INTRON bun
3L	14086583	3L_14086583_SNP [dm3] 3L_14093483_SNP [dm6]	C	T	1.771e^-4	0.838	INTERGENIC
2L	17518730	2L_17518730_SNP [dm3] 2L_17518730_SNP [dm6]	C	T	1.772e^-4	0.838	SYNONYMOUS_CODING Dhc36C
3R	16307464	3R_16307464_SNP [dm3] 3R_20481742_SNP [dm6]	T	C	1.787e^-4	0.838	INTRON Gfrl
3R	22245397	3R_22245397_SNP [dm3] 3R_26419675_SNP [dm6]	C	G	1.789e^-4	0.838	INTERGENIC
3R	10092221	3R_10092221_SNP [dm3] 3R_14266499_SNP [dm6]	C	A	1.791e^-4	0.838	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8444334	2R_8444334_SNP [dm3] 2R_12556829_SNP [dm6]	C	T	1.792e^-4	0.838	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1711819	2L_1711819_SNP [dm3] 2L_1711819_SNP [dm6]	C	T	1.801e^-4	0.838	NON_SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48
3R	10182513	3R_10182513_SNP [dm3] 3R_14356791_SNP [dm6]	A	T	1.803e^-4	0.838	INTRON NK7.1
3R	21617503	3R_21617503_SNP [dm3] 3R_25791781_SNP [dm6]	C	T	1.804e^-4	0.838	DOWNSTREAM CR43632 EXON CR43631
3L	1996351	3L_1996351_SNP [dm3] 3L_1996351_SNP [dm6]	T	A	1.805e^-4	0.838	INTERGENIC
2L	19156736	2L_19156736_SNP [dm3] 2L_19156736_SNP [dm6]	C	T	1.810e^-4	0.838	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	3136177	3R_3136177_SNP [dm3] 3R_7310455_SNP [dm6]	G	T	1.811e^-4	0.838	UPSTREAM rn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11912273	2L_11912273_SNP [dm3] 2L_11912273_SNP [dm6]	T	C	1.812e^-4	0.838	INTRON Pde1c
2L	4961540	2L_4961540_SNP [dm3] 2L_4961540_SNP [dm6]	G	T	1.827e^-4	0.838	SPLICE_SITE_REGION CG34124 INTRON CG34124	TF binding site mE1_TFBS_chinmo
2R	15193496	2R_15193496_SNP [dm3] 2R_19305991_SNP [dm6]	T	C	1.828e^-4	0.838	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26856320	3R_26856320_SNP [dm3] 3R_31030598_SNP [dm6]	C	T	1.832e^-4	0.838	INTERGENIC
3R	25095102	3R_25095102_SNP [dm3] 3R_29269380_SNP [dm6]	C	A	1.833e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3355127	2L_3355127_SNP [dm3] 2L_3355127_SNP [dm6]	G	C	1.837e^-4	0.838	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16424862	X_16424862_SNP [dm3] X_16530829_SNP [dm6]	G	A	1.838e^-4	0.838	INTRON para
2L	11846738	2L_11846738_SNP [dm3] 2L_11846738_SNP [dm6]	G	A	1.846e^-4	0.838	UPSTREAM Mal-B1 INTRON Pde1c
2R	14930390	2R_14930390_DEL [dm3] 2R_19042885_DEL [dm6]	AGGGAACCACGTC...	G	1.849e^-4	0.838	INTERGENIC
2L	18823116	2L_18823116_SNP [dm3] 2L_18823116_SNP [dm6]	A	G	1.854e^-4	0.838	UPSTREAM CG17323 DOWNSTREAM CG17324 INTERGENIC
3L	16415859	3L_16415859_INS [dm3] 3L_16422759_INS [dm6]	AC	GTT	1.856e^-4	0.838	DOWNSTREAM dsx-c73A INTRON CG33158
2R	17457352	2R_17457352_SNP [dm3] 2R_21569847_SNP [dm6]	A	G	1.857e^-4	0.838	INTRON CG10440
2L	7230159	2L_7230159_SNP [dm3] 2L_7230159_SNP [dm6]	G	A	1.861e^-4	0.838	SYNONYMOUS_CODING Ndae1
3R	15119201	3R_15119201_INS [dm3] 3R_19293479_INS [dm6]	A	ACTGTTAAGT	1.861e^-4	0.838	INTERGENIC
3R	15002243	3R_15002243_DEL [dm3] 3R_19176521_DEL [dm6]	CC	C	1.869e^-4	0.838	UPSTREAM CG14282 INTERGENIC
X	17739369	X_17739369_SNP [dm3] X_17845336_SNP [dm6]	T	A	1.872e^-4	0.838	UTR_5_PRIME Ucp4A UPSTREAM CG8142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19009079	3R_19009079_SNP [dm3] 3R_23183357_SNP [dm6]	T	C	1.873e^-4	0.838	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19863290	2L_19863290_SNP [dm3] 2L_19863290_SNP [dm6]	A	T	1.873e^-4	0.838	INTRON sick
2R	16747646	2R_16747646_SNP [dm3] 2R_20860141_SNP [dm6]	C	T	1.875e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13366732	3L_13366732_SNP [dm3] 3L_13373632_SNP [dm6]	C	G	1.880e^-4	0.838	INTERGENIC
X	5380557	X_5380557_SNP [dm3] X_5486524_SNP [dm6]	T	C	1.881e^-4	0.838	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9222263	2R_9222263_SNP [dm3] 2R_13334758_SNP [dm6]	A	G	1.883e^-4	0.838	INTRON CR44206
3R	15001972	3R_15001972_SNP [dm3] 3R_19176250_SNP [dm6]	A	C	1.884e^-4	0.838	UPSTREAM CG14282 INTERGENIC
2L	9287649	2L_9287649_SNP [dm3] 2L_9287649_SNP [dm6]	G	A	1.889e^-4	0.838	INTRON Ggamma30A
3R	14530086	3R_14530086_SNP [dm3] 3R_18704364_SNP [dm6]	G	C	1.893e^-4	0.838	INTERGENIC
3R	14530087	3R_14530087_SNP [dm3] 3R_18704365_SNP [dm6]	T	A	1.893e^-4	0.838	INTERGENIC
3R	7730477	3R_7730477_SNP [dm3] 3R_11904755_SNP [dm6]	C	T	1.902e^-4	0.838	INTRON Cad87A
2L	10330353	2L_10330353_SNP [dm3] 2L_10330353_SNP [dm6]	G	A	1.910e^-4	0.838	NON_SYNONYMOUS_CODING CG5375	TF binding site mE1_TFBS_sens
3R	7264897	3R_7264897_SNP [dm3] 3R_11439175_SNP [dm6]	C	T	1.916e^-4	0.838	INTRON CG17230 & 1 other
2R	20741963	2R_20741963_SNP [dm3] 2R_24854440_SNP [dm6]	C	A	1.916e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20190416	2R_20190416_SNP [dm3] 2R_24302893_SNP [dm6]	T	G	1.927e^-4	0.838	INTERGENIC
3L	18319774	3L_18319774_SNP [dm3] 3L_18326674_SNP [dm6]	A	G	1.933e^-4	0.838	INTERGENIC
2L	19163534	2L_19163534_SNP [dm3] 2L_19163534_SNP [dm6]	T	C	1.936e^-4	0.838	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10530644	3L_10530644_SNP [dm3] 3L_10537544_SNP [dm6]	A	G	1.941e^-4	0.838	INTRON A2bp1
2R	15108558	2R_15108558_SNP [dm3] 2R_19221053_SNP [dm6]	C	T	1.943e^-4	0.838	INTRON hppy
3L	14362504	3L_14362504_SNP [dm3] 3L_14369404_SNP [dm6]	C	T	1.943e^-4	0.838	SYNONYMOUS_CODING CG13481 DOWNSTREAM fz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5926112	2L_5926112_SNP [dm3] 2L_5926112_SNP [dm6]	T	C	1.948e^-4	0.838	UTR_5_PRIME dsf UPSTREAM CR43926
X	15358761	X_15358761_SNP [dm3] X_15464728_SNP [dm6]	G	A	1.957e^-4	0.838	UTR_5_PRIME CG6299 UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
X	3519981	X_3519981_SNP [dm3] X_3625948_SNP [dm6]	C	A	1.966e^-4	0.838	INTRON AstA-R1
3R	14996198	3R_14996198_SNP [dm3] 3R_19170476_SNP [dm6]	G	A	1.971e^-4	0.838	UTR_3_PRIME sqz
2R	1585410	2R_1585410_SNP [dm3] 2R_5697905_SNP [dm6]	G	A	1.976e^-4	0.838	UTR_5_PRIME CG17337 UPSTREAM CG17337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17028304	2R_17028304_SNP [dm3] 2R_21140799_SNP [dm6]	G	A	1.977e^-4	0.838	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	3458469	X_3458469_SNP [dm3] X_3564436_SNP [dm6]	A	G	1.980e^-4	0.838	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
X	18814833	X_18814833_SNP [dm3] X_18920800_SNP [dm6]	T	C	1.982e^-4	0.838	INTERGENIC
2R	20730244	2R_20730244_SNP [dm3] 2R_24842721_SNP [dm6]	G	A	1.989e^-4	0.838	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	8418035	3L_8418035_SNP [dm3] 3L_8424935_SNP [dm6]	G	C	1.989e^-4	0.838	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13850739	2R_13850739_SNP [dm3] 2R_17963234_SNP [dm6]	A	G	1.990e^-4	0.838	INTERGENIC
3R	14530101	3R_14530101_SNP [dm3] 3R_18704379_SNP [dm6]	T	C	1.991e^-4	0.838	INTERGENIC
3L	22784913	3L_22784913_SNP [dm3] 3L_22791813_SNP [dm6]	C	T	1.999e^-4	0.838	UTR_3_PRIME jim
3L	10528278	3L_10528278_DEL [dm3] 3L_10535178_DEL [dm6]	TT	T	2.008e^-4	0.838	INTRON A2bp1
3R	7801608	3R_7801608_SNP [dm3] 3R_11975886_SNP [dm6]	A	T	2.016e^-4	0.838	UPSTREAM Tango9 INTRON CG10005	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9523849	2L_9523849_INS [dm3] 2L_9523849_INS [dm6]	G	GG	2.022e^-4	0.838	INTRON Oatp30B	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3R	7326694	3R_7326694_SNP [dm3] 3R_11500972_SNP [dm6]	T	G	2.024e^-4	0.838	UPSTREAM dpr5 INTRON dpr5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
3R	18619301	3R_18619301_DEL [dm3] 3R_22793579_DEL [dm6]	TT	T	2.031e^-4	0.838	UTR_3_PRIME CG7029	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4490719	2L_4490719_SNP [dm3] 2L_4490719_SNP [dm6]	T	C	2.034e^-4	0.838	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12932400	3L_12932400_SNP [dm3] 3L_12939300_SNP [dm6]	T	A	2.035e^-4	0.838	INTERGENIC
2L	18642356	2L_18642356_SNP [dm3] 2L_18642356_SNP [dm6]	A	G	2.037e^-4	0.838	INTRON MESR3
3L	9491899	3L_9491899_SNP [dm3] 3L_9498799_SNP [dm6]	T	C	2.037e^-4	0.838	INTRON path
2L	20906433	2L_20906433_DEL [dm3] 2L_20906433_DEL [dm6]	CTTCT	A	2.041e^-4	0.838	INTRON sky & 1 other
2L	19173802	2L_19173802_SNP [dm3] 2L_19173802_SNP [dm6]	C	T	2.050e^-4	0.838	UTR_3_PRIME brat INTRON brat
2R	1594840	2R_1594840_SNP [dm3] 2R_5707335_SNP [dm6]	G	A	2.053e^-4	0.838	UTR_3_PRIME ap
3L	12871670	3L_12871670_SNP [dm3] 3L_12878570_SNP [dm6]	A	C	2.055e^-4	0.838	INTERGENIC
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	2.062e^-4	0.838	INTRON pHCl
2R	2608488	2R_2608488_SNP [dm3] 2R_6720983_SNP [dm6]	A	G	2.064e^-4	0.838	DOWNSTREAM l_2_01289 INTERGENIC
3L	7337757	3L_7337757_INS [dm3] 3L_7344657_INS [dm6]	A	AAA	2.078e^-4	0.838	UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20951888	2L_20951888_SNP [dm3] 2L_20951888_SNP [dm6]	G	T	2.078e^-4	0.838	INTERGENIC
3L	17982951	3L_17982951_SNP [dm3] 3L_17989851_SNP [dm6]	T	G	2.089e^-4	0.838	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14154546	3L_14154546_SNP [dm3] 3L_14161446_SNP [dm6]	G	T	2.102e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
X	16488577	X_16488577_SNP [dm3] X_16594544_SNP [dm6]	C	T	2.104e^-4	0.838	DOWNSTREAM CG9784 INTRON crl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16704998	3L_16704998_SNP [dm3] 3L_16711898_SNP [dm6]	A	T	2.117e^-4	0.838	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	18644620	2L_18644620_SNP [dm3] 2L_18644620_SNP [dm6]	A	T	2.122e^-4	0.838	INTRON MESR3
X	10269638	X_10269638_SNP [dm3] X_10375605_SNP [dm6]	C	T	2.126e^-4	0.838	SYNONYMOUS_CODING CG2898 UPSTREAM CG32686 INTRON CG17841	TF binding site mE1_TFBS_chinmo
2R	14098879	2R_14098879_SNP [dm3] 2R_18211374_SNP [dm6]	C	G	2.128e^-4	0.838	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1996662	3L_1996662_SNP [dm3] 3L_1996662_SNP [dm6]	A	G	2.129e^-4	0.838	INTERGENIC
3L	14086955	3L_14086955_SNP [dm3] 3L_14093855_SNP [dm6]	T	C	2.131e^-4	0.838	DOWNSTREAM Fbp1 INTERGENIC
3R	8560615	3R_8560615_SNP [dm3] 3R_12734893_SNP [dm6]	T	A	2.133e^-4	0.838	INTERGENIC
2R	19187351	2R_19187351_SNP [dm3] 2R_23299828_SNP [dm6]	T	C	2.135e^-4	0.838	INTERGENIC
3L	10964977	3L_10964977_SNP [dm3] 3L_10971877_SNP [dm6]	C	T	2.139e^-4	0.838	UPSTREAM CG14147 INTERGENIC
3R	14589012	3R_14589012_SNP [dm3] 3R_18763290_SNP [dm6]	A	G	2.147e^-4	0.838	INTRON CG7720
2L	10320407	2L_10320407_SNP [dm3] 2L_10320407_SNP [dm6]	A	G	2.150e^-4	0.838	INTRON CG5381
2R	15193490	2R_15193490_SNP [dm3] 2R_19305985_SNP [dm6]	C	T	2.164e^-4	0.838	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10560907	3L_10560907_DEL [dm3] 3L_10567807_DEL [dm6]	CTGC	C	2.167e^-4	0.838	INTRON A2bp1
2R	15193193	2R_15193193_SNP [dm3] 2R_19305688_SNP [dm6]	G	A	2.169e^-4	0.838	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
2R	15108590	2R_15108590_SNP [dm3] 2R_19221085_SNP [dm6]	T	C	2.169e^-4	0.838	INTRON hppy
3R	16005476	3R_16005476_SNP [dm3] 3R_20179754_SNP [dm6]	G	C	2.171e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2999131	2L_2999131_SNP [dm3] 2L_2999131_SNP [dm6]	G	A	2.176e^-4	0.838	UPSTREAM CG17265 DOWNSTREAM CG3558 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h
2L	9328741	2L_9328741_SNP [dm3] 2L_9328741_SNP [dm6]	A	G	2.188e^-4	0.838	INTRON CG17005	TF binding site mE1_TFBS_cad
2R	15194859	2R_15194859_SNP [dm3] 2R_19307354_SNP [dm6]	C	A	2.199e^-4	0.838	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
2L	19874712	2L_19874712_SNP [dm3] 2L_19874712_SNP [dm6]	T	C	2.202e^-4	0.838	INTRON sick	TF binding site mE1_TFBS_cad
2R	20932172	2R_20932172_SNP [dm3] 2R_25044649_SNP [dm6]	C	A	2.208e^-4	0.838	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2548760	3L_2548760_SNP [dm3] 3L_2548760_SNP [dm6]	G	A	2.210e^-4	0.838	INTRON Spn
2L	2982876	2L_2982876_SNP [dm3] 2L_2982876_SNP [dm6]	G	A	2.210e^-4	0.838	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21743353	3R_21743353_SNP [dm3] 3R_25917631_SNP [dm6]	C	A	2.213e^-4	0.838	DOWNSTREAM CG42235 INTRON CG42235
2R	16420562	2R_16420562_SNP [dm3] 2R_20533057_SNP [dm6]	C	T	2.222e^-4	0.838	UPSTREAM CG30154 DOWNSTREAM CR44651 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16888677	3R_16888677_SNP [dm3] 3R_21062955_SNP [dm6]	A	G	2.236e^-4	0.838	SYNONYMOUS_CODING Cortactin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24083637	3R_24083637_SNP [dm3] 3R_28257915_SNP [dm6]	T	A	2.241e^-4	0.838	INTERGENIC
3R	23560174	3R_23560174_SNP [dm3] 3R_27734452_SNP [dm6]	C	T	2.247e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1280959	3R_1280959_SNP [dm3] 3R_5455237_SNP [dm6]	A	T	2.255e^-4	0.838	INTRON CG14669	TF binding site mE1_TFBS_cad
2L	19842888	2L_19842888_SNP [dm3] 2L_19842888_SNP [dm6]	A	C	2.257e^-4	0.838	INTRON sick
2L	9383814	2L_9383814_SNP [dm3] 2L_9383814_SNP [dm6]	G	C	2.261e^-4	0.838	INTRON Shawl
2L	9383819	2L_9383819_SNP [dm3] 2L_9383819_SNP [dm6]	T	A	2.261e^-4	0.838	INTRON Shawl
3R	9024934	3R_9024934_SNP [dm3] 3R_13199212_SNP [dm6]	A	C	2.264e^-4	0.838	INTERGENIC
2L	3720027	2L_3720027_SNP [dm3] 2L_3720027_SNP [dm6]	T	C	2.268e^-4	0.838	INTRON Shaw	TF binding site BDTNP1_TFBS_dl
2L	16422184	2L_16422184_SNP [dm3] 2L_16422184_SNP [dm6]	G	T	2.270e^-4	0.838	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	20825368	2R_20825368_SNP [dm3] 2R_24937845_SNP [dm6]	T	G	2.281e^-4	0.838	UPSTREAM CG3760 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	7754193	3L_7754193_SNP [dm3] 3L_7761093_SNP [dm6]	G	A	2.282e^-4	0.838	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
3L	14086034	3L_14086034_SNP [dm3] 3L_14092934_SNP [dm6]	T	C	2.288e^-4	0.838	INTERGENIC
2L	3843201	2L_3843201_SNP [dm3] 2L_3843201_SNP [dm6]	C	G	2.299e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	2487647	X_2487647_SNP [dm3] X_2593614_SNP [dm6]	A	G	2.301e^-4	0.838	UTR_5_PRIME egh INTRON egh
3R	3585407	3R_3585407_SNP [dm3] 3R_7759685_SNP [dm6]	G	C	2.303e^-4	0.838	UPSTREAM Sp7 DOWNSTREAM CG10919 INTERGENIC
3R	19571838	3R_19571838_SNP [dm3] 3R_23746116_SNP [dm6]	T	C	2.310e^-4	0.838	INTRON Hmgcr	TF binding site mE1_TFBS_cad
2L	12076879	2L_12076879_SNP [dm3] 2L_12076879_SNP [dm6]	C	G	2.320e^-4	0.838	SYNONYMOUS_CODING CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20631117	2L_20631117_SNP [dm3] 2L_20631117_SNP [dm6]	C	T	2.320e^-4	0.838	INTERGENIC
2L	19156534	2L_19156534_SNP [dm3] 2L_19156534_SNP [dm6]	T	G	2.323e^-4	0.838	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14410256	2R_14410256_SNP [dm3] 2R_18522751_SNP [dm6]	A	T	2.327e^-4	0.838	INTRON CG43066	TF binding site mE1_TFBS_HSA
2R	16060614	2R_16060614_SNP [dm3] 2R_20173109_SNP [dm6]	G	T	2.333e^-4	0.838	INTERGENIC
2L	10320470	2L_10320470_SNP [dm3] 2L_10320470_SNP [dm6]	T	C	2.336e^-4	0.838	INTRON CG5381
2L	3360707	2L_3360707_SNP [dm3] 2L_3360707_SNP [dm6]	T	A	2.336e^-4	0.838	UTR_3_PRIME CG34394
3L	14476249	3L_14476249_SNP [dm3] 3L_14483149_SNP [dm6]	T	A	2.337e^-4	0.838	INTRON bbg
3L	7337728	3L_7337728_SNP [dm3] 3L_7344628_SNP [dm6]	C	G	2.338e^-4	0.838	UPSTREAM CG8596 INTRON CG8596	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18836867	X_18836867_SNP [dm3] X_18942834_SNP [dm6]	T	C	2.345e^-4	0.838	INTRON CG43759
3L	20742501	3L_20742501_SNP [dm3] 3L_20749401_SNP [dm6]	C	A	2.346e^-4	0.838	INTERGENIC
3L	16705027	3L_16705027_SNP [dm3] 3L_16711927_SNP [dm6]	A	T	2.346e^-4	0.838	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18553973	3L_18553973_SNP [dm3] 3L_18560873_SNP [dm6]	T	A	2.348e^-4	0.838	INTRON AstC-R1
3L	11297359	3L_11297359_SNP [dm3] 3L_11304259_SNP [dm6]	T	C	2.351e^-4	0.838	INTERGENIC
2L	12076831	2L_12076831_SNP [dm3] 2L_12076831_SNP [dm6]	G	A	2.353e^-4	0.838	SYNONYMOUS_CODING CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9248357	X_9248357_SNP [dm3] X_9354324_SNP [dm6]	A	G	2.377e^-4	0.838	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14892008	2L_14892008_SNP [dm3] 2L_14892008_SNP [dm6]	T	A	2.382e^-4	0.838	INTERGENIC
3R	6974985	3R_6974985_SNP [dm3] 3R_11149263_SNP [dm6]	G	A	2.382e^-4	0.838	INTERGENIC
3L	10560822	3L_10560822_SNP [dm3] 3L_10567722_SNP [dm6]	A	G	2.387e^-4	0.838	INTRON A2bp1
3R	10739902	3R_10739902_SNP [dm3] 3R_14914180_SNP [dm6]	T	A	2.389e^-4	0.838	INTERGENIC
2L	4007581	2L_4007581_SNP [dm3] 2L_4007581_SNP [dm6]	G	A	2.394e^-4	0.838	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
2R	17457374	2R_17457374_SNP [dm3] 2R_21569869_SNP [dm6]	T	C	2.397e^-4	0.838	INTRON CG10440
2L	19159300	2L_19159300_SNP [dm3] 2L_19159300_SNP [dm6]	G	C	2.400e^-4	0.838	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
3L	820325	3L_820325_SNP [dm3] 3L_820325_SNP [dm6]	A	G	2.407e^-4	0.838	UPSTREAM CR43883 INTERGENIC
3L	12080612	3L_12080612_SNP [dm3] 3L_12087512_SNP [dm6]	G	A	2.408e^-4	0.838	INTERGENIC
2L	18776877	2L_18776877_SNP [dm3] 2L_18776877_SNP [dm6]	C	T	2.426e^-4	0.838	INTRON ham	TF binding site mE1_TFBS_bab1
3L	1997206	3L_1997206_SNP [dm3] 3L_1997206_SNP [dm6]	T	C	2.427e^-4	0.838	INTERGENIC
3L	16632265	3L_16632265_SNP [dm3] 3L_16639165_SNP [dm6]	C	A	2.427e^-4	0.838	INTRON Abl
2R	15108604	2R_15108604_SNP [dm3] 2R_19221099_SNP [dm6]	T	A	2.427e^-4	0.838	INTRON hppy
3R	7320707	3R_7320707_INS [dm3] 3R_11494985_INS [dm6]	T	TAGTTTTTTTTCTT...	2.432e^-4	0.838	INTERGENIC
3L	10560043	3L_10560043_SNP [dm3] 3L_10566943_SNP [dm6]	T	C	2.442e^-4	0.838	INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	18820321	2L_18820321_SNP [dm3] 2L_18820321_SNP [dm6]	C	A	2.445e^-4	0.838	NON_SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3R	8660842	3R_8660842_SNP [dm3] 3R_12835120_SNP [dm6]	A	T	2.452e^-4	0.838	INTERGENIC
2L	7722128	2L_7722128_SNP [dm3] 2L_7722128_SNP [dm6]	A	G	2.453e^-4	0.838	DOWNSTREAM CG13795 INTRON CG13794
3L	22427232	3L_22427232_INS [dm3] 3L_22434132_INS [dm6]	G	GGTAG	2.455e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	22252283	3R_22252283_DEL [dm3] 3R_26426561_DEL [dm6]	TTGATTTAAAAGACGGCTAG...	T	2.456e^-4	0.838	UPSTREAM CG34291 INTRON CR31084
2R	20825055	2R_20825055_SNP [dm3] 2R_24937532_SNP [dm6]	T	C	2.464e^-4	0.838	UPSTREAM CG3760 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13823884	X_13823884_SNP [dm3] X_13929851_SNP [dm6]	C	T	2.470e^-4	0.838	INTRON mamo
2L	19174255	2L_19174255_SNP [dm3] 2L_19174255_SNP [dm6]	T	G	2.473e^-4	0.838	UTR_3_PRIME brat INTRON brat
3R	12243772	3R_12243772_SNP [dm3] 3R_16418050_SNP [dm6]	G	A	2.476e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
3R	15207027	3R_15207027_SNP [dm3] 3R_19381305_SNP [dm6]	G	A	2.477e^-4	0.838	INTRON Ino80
3R	9167652	3R_9167652_SNP [dm3] 3R_13341930_SNP [dm6]	A	G	2.487e^-4	0.838	INTRON PK2-R1
X	21185837	X_21185837_SNP [dm3] X_21314810_SNP [dm6]	A	T	2.489e^-4	0.838	INTRON CG1801
2R	8704132	2R_8704132_DEL [dm3] 2R_12816627_DEL [dm6]	AATGTTTGA	A	2.489e^-4	0.838	INTERGENIC
2R	18441877	2R_18441877_SNP [dm3] 2R_22554372_SNP [dm6]	C	T	2.492e^-4	0.838	INTRON px
3L	16883785	3L_16883785_SNP [dm3] 3L_16890685_SNP [dm6]	T	C	2.493e^-4	0.838	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18371244	3R_18371244_SNP [dm3] 3R_22545522_SNP [dm6]	C	A	2.495e^-4	0.838	INTRON AdipoR
3L	14432271	3L_14432271_SNP [dm3] 3L_14439171_SNP [dm6]	T	G	2.499e^-4	0.838	INTRON bbg
3L	18715469	3L_18715469_SNP [dm3] 3L_18722369_SNP [dm6]	G	A	2.503e^-4	0.838	SYNONYMOUS_CODING CG12477	TF binding site mE1_TFBS_cad
2L	7373792	2L_7373792_SNP [dm3] 2L_7373792_SNP [dm6]	A	G	2.519e^-4	0.838	INTRON Wnt10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6858361	X_6858361_SNP [dm3] X_6964328_SNP [dm6]	G	A	2.525e^-4	0.838	INTRON CG32732 & 1 other	TF binding site mE1_TFBS_chinmo
3R	18059495	3R_18059495_SNP [dm3] 3R_22233773_SNP [dm6]	C	G	2.525e^-4	0.838	INTRON SKIP
3L	14086921	3L_14086921_SNP [dm3] 3L_14093821_SNP [dm6]	T	C	2.526e^-4	0.838	DOWNSTREAM Fbp1 INTERGENIC
2R	8443011	2R_8443011_SNP [dm3] 2R_12555506_SNP [dm6]	A	G	2.528e^-4	0.838	INTRON fra
3R	20774838	3R_20774838_SNP [dm3] 3R_24949116_SNP [dm6]	A	C	2.530e^-4	0.838	SYNONYMOUS_CODING CG13646
2L	7975282	2L_7975282_SNP [dm3] 2L_7975282_SNP [dm6]	C	G	2.530e^-4	0.838	SYNONYMOUS_CODING Snoo
X	22056793	X_22056793_SNP [dm3] X_22654957_SNP [dm6]	G	T	2.537e^-4	0.838	INTERGENIC
3L	10526804	3L_10526804_SNP [dm3] 3L_10533704_SNP [dm6]	A	T	2.537e^-4	0.838	INTRON A2bp1
3R	15371877	3R_15371877_SNP [dm3] 3R_19546155_SNP [dm6]	A	C	2.567e^-4	0.838	INTRON Dys	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	15108653	2R_15108653_MNP [dm3] 2R_19221148_MNP [dm6]	TTT	ACC	2.576e^-4	0.838	INTRON hppy
3L	18009166	3L_18009166_SNP [dm3] 3L_18016066_SNP [dm6]	T	G	2.580e^-4	0.838	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19393140	2R_19393140_SNP [dm3] 2R_23505617_SNP [dm6]	C	T	2.582e^-4	0.838	INTERGENIC
2R	13544469	2R_13544469_SNP [dm3] 2R_17656964_SNP [dm6]	C	T	2.584e^-4	0.838	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16410222	2R_16410222_SNP [dm3] 2R_20522717_SNP [dm6]	T	A	2.586e^-4	0.838	INTERGENIC
3L	18822439	3L_18822439_SNP [dm3] 3L_18829339_SNP [dm6]	T	C	2.597e^-4	0.838	NON_SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
2L	7369171	2L_7369171_SNP [dm3] 2L_7369171_SNP [dm6]	A	G	2.599e^-4	0.838	DOWNSTREAM CR44063 INTRON Wnt10
2L	16199625	2L_16199625_SNP [dm3] 2L_16199625_SNP [dm6]	A	G	2.601e^-4	0.838	INTERGENIC
2R	15108609	2R_15108609_SNP [dm3] 2R_19221104_SNP [dm6]	C	A	2.601e^-4	0.838	INTRON hppy
3L	16234795	3L_16234795_SNP [dm3] 3L_16241695_SNP [dm6]	C	A	2.602e^-4	0.838	INTERGENIC
2R	15108603	2R_15108603_SNP [dm3] 2R_19221098_SNP [dm6]	T	A	2.605e^-4	0.838	INTRON hppy
2R	15108615	2R_15108615_SNP [dm3] 2R_19221110_SNP [dm6]	C	A	2.605e^-4	0.838	INTRON hppy
X	3368299	X_3368299_MNP [dm3] X_3474266_MNP [dm6]	TCG	ATT	2.605e^-4	0.838	UTR_5_PRIME CG12206 UPSTREAM CG12206 INTRON CR44999 & 1 other
X	12635242	X_12635242_SNP [dm3] X_12741209_SNP [dm6]	A	G	2.607e^-4	0.838	INTRON Smr
2R	13227124	2R_13227124_SNP [dm3] 2R_17339619_SNP [dm6]	G	T	2.607e^-4	0.838	INTRON mbl
X	12635142	X_12635142_SNP [dm3] X_12741109_SNP [dm6]	C	T	2.614e^-4	0.838	INTRON Smr
X	18195900	X_18195900_DEL [dm3] X_18301867_DEL [dm6]	TT	T	2.623e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6640227	2R_6640227_SNP [dm3] 2R_10752722_SNP [dm6]	G	A	2.624e^-4	0.838	INTRON CG33144
2R	17565847	2R_17565847_SNP [dm3] 2R_21678342_SNP [dm6]	T	A	2.629e^-4	0.838	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16233743	3L_16233743_SNP [dm3] 3L_16240643_SNP [dm6]	A	G	2.630e^-4	0.838	INTERGENIC
2R	20793155	2R_20793155_SNP [dm3] 2R_24905632_SNP [dm6]	G	A	2.641e^-4	0.838	NON_SYNONYMOUS_CODING NaCP60E UTR_3_PRIME NaCP60E
X	16488579	X_16488579_SNP [dm3] X_16594546_SNP [dm6]	C	T	2.645e^-4	0.838	DOWNSTREAM CG9784 INTRON crl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12875377	2R_12875377_SNP [dm3] 2R_16987872_SNP [dm6]	G	T	2.655e^-4	0.838	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8446927	2R_8446927_SNP [dm3] 2R_12559422_SNP [dm6]	A	G	2.664e^-4	0.838	INTRON fra
3R	11739306	3R_11739306_SNP [dm3] 3R_15913584_SNP [dm6]	T	C	2.667e^-4	0.838	SYNONYMOUS_CODING CG45105 UTR_3_PRIME CG45105 INTRON CG45105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	15108640	2R_15108640_SNP [dm3] 2R_19221135_SNP [dm6]	A	T	2.670e^-4	0.838	INTRON hppy
2L	19177028	2L_19177028_SNP [dm3] 2L_19177028_SNP [dm6]	T	A	2.676e^-4	0.838	UTR_3_PRIME brat INTRON brat
3R	19837352	3R_19837352_SNP [dm3] 3R_24011630_SNP [dm6]	C	T	2.682e^-4	0.838	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
2R	3756113	2R_3756113_SNP [dm3] 2R_7868608_SNP [dm6]	G	T	2.682e^-4	0.838	INTRON Dgk
3L	18822407	3L_18822407_SNP [dm3] 3L_18829307_SNP [dm6]	G	T	2.683e^-4	0.838	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3L	17544950	3L_17544950_SNP [dm3] 3L_17551850_SNP [dm6]	G	T	2.684e^-4	0.838	UTR_3_PRIME CycT DOWNSTREAM CG7542 & 1 other
2L	9381988	2L_9381988_SNP [dm3] 2L_9381988_SNP [dm6]	A	G	2.687e^-4	0.838	INTRON Shawl
3L	9182676	3L_9182676_SNP [dm3] 3L_9189576_SNP [dm6]	T	C	2.691e^-4	0.838	INTERGENIC
2R	15108673	2R_15108673_SNP [dm3] 2R_19221168_SNP [dm6]	T	A	2.693e^-4	0.838	INTRON hppy
2R	15108677	2R_15108677_SNP [dm3] 2R_19221172_SNP [dm6]	C	T	2.693e^-4	0.838	INTRON hppy
3L	18757284	3L_18757284_DEL [dm3] 3L_18764184_DEL [dm6]	TGTT	T	2.701e^-4	0.838	CODON_DELETION ftz-f1 INTRON ftz-f1
3L	8412232	3L_8412232_SNP [dm3] 3L_8419132_SNP [dm6]	T	A	2.703e^-4	0.838	INTRON CG32354
3L	10543684	3L_10543684_SNP [dm3] 3L_10550584_SNP [dm6]	G	T	2.703e^-4	0.838	INTRON A2bp1
2R	20992030	2R_20992030_SNP [dm3] 2R_25104507_SNP [dm6]	C	T	2.706e^-4	0.838	INTRON lov
2R	6776241	2R_6776241_SNP [dm3] 2R_10888736_SNP [dm6]	G	A	2.709e^-4	0.838	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_cad
3R	3271868	3R_3271868_SNP [dm3] 3R_7446146_SNP [dm6]	G	A	2.710e^-4	0.838	INTERGENIC
2R	7578538	2R_7578538_SNP [dm3] 2R_11691033_SNP [dm6]	T	A	2.716e^-4	0.838	UPSTREAM CG13197 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15108611	2R_15108611_SNP [dm3] 2R_19221106_SNP [dm6]	C	G	2.720e^-4	0.838	INTRON hppy
2R	5443262	2R_5443262_SNP [dm3] 2R_9555757_SNP [dm6]	C	A	2.721e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10543700	3L_10543700_SNP [dm3] 3L_10550600_SNP [dm6]	A	G	2.722e^-4	0.838	INTRON A2bp1
2L	3395891	2L_3395891_SNP [dm3] 2L_3395891_SNP [dm6]	C	T	2.736e^-4	0.838	INTERGENIC
2R	8446928	2R_8446928_SNP [dm3] 2R_12559423_SNP [dm6]	G	C	2.746e^-4	0.838	INTRON fra
2R	17457348	2R_17457348_SNP [dm3] 2R_21569843_SNP [dm6]	C	A	2.752e^-4	0.838	INTRON CG10440
2R	6751500	2R_6751500_SNP [dm3] 2R_10863995_SNP [dm6]	A	T	2.754e^-4	0.838	INTRON CG30015
X	18993146	X_18993146_SNP [dm3] X_19099113_SNP [dm6]	C	G	2.757e^-4	0.838	INTERGENIC
3L	16707140	3L_16707140_SNP [dm3] 3L_16714040_SNP [dm6]	C	T	2.758e^-4	0.838	UTR_5_PRIME Dab INTRON Dab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5874456	3L_5874456_SNP [dm3] 3L_5881356_SNP [dm6]	C	G	2.758e^-4	0.838	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13202519	3R_13202519_SNP [dm3] 3R_17376797_SNP [dm6]	G	A	2.759e^-4	0.838	INTRON Brf
2R	3295644	2R_3295644_SNP [dm3] 2R_7408139_SNP [dm6]	A	G	2.763e^-4	0.838	UPSTREAM Eaf DOWNSTREAM CG1701 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9089405	3L_9089405_SNP [dm3] 3L_9096305_SNP [dm6]	T	C	2.777e^-4	0.838	UPSTREAM CG13315 INTERGENIC
2L	21148929	2L_21148929_SNP [dm3] 2L_21148929_SNP [dm6]	A	C	2.781e^-4	0.838	UPSTREAM del INTERGENIC
3L	14380147	3L_14380147_SNP [dm3] 3L_14387047_SNP [dm6]	A	T	2.791e^-4	0.838	INTERGENIC
3L	7754492	3L_7754492_SNP [dm3] 3L_7761392_SNP [dm6]	C	T	2.795e^-4	0.838	UTR_5_PRIME Hn INTRON Hn
3L	8802859	3L_8802859_SNP [dm3] 3L_8809759_SNP [dm6]	G	A	2.796e^-4	0.838	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
2R	15108601	2R_15108601_SNP [dm3] 2R_19221096_SNP [dm6]	A	C	2.797e^-4	0.838	INTRON hppy
3R	22252268	3R_22252268_SNP [dm3] 3R_26426546_SNP [dm6]	A	T	2.798e^-4	0.838	UPSTREAM CG34291 INTRON CR31084
3L	11307016	3L_11307016_SNP [dm3] 3L_11313916_SNP [dm6]	A	C	2.800e^-4	0.838	DOWNSTREAM CG7573 INTERGENIC
3L	17463078	3L_17463078_SNP [dm3] 3L_17469978_SNP [dm6]	T	C	2.812e^-4	0.838	UPSTREAM CG7589 INTERGENIC
3R	18442301	3R_18442301_SNP [dm3] 3R_22616579_SNP [dm6]	A	G	2.812e^-4	0.838	UTR_5_PRIME CG31161 UTR_3_PRIME EF-G2
3L	10529037	3L_10529037_SNP [dm3] 3L_10535937_SNP [dm6]	A	G	2.817e^-4	0.838	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4823446	3R_4823446_SNP [dm3] 3R_8997724_SNP [dm6]	G	T	2.822e^-4	0.838	SYNONYMOUS_CODING CG11977 INTRON CG31100
3R	25630964	3R_25630964_SNP [dm3] 3R_29805242_SNP [dm6]	G	A	2.824e^-4	0.838	SYNONYMOUS_CODING ncd DOWNSTREAM CG7789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11115585	3L_11115585_SNP [dm3] 3L_11122485_SNP [dm6]	C	G	2.834e^-4	0.838	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	21038448	3L_21038448_SNP [dm3] 3L_21045348_SNP [dm6]	G	A	2.835e^-4	0.838	INTRON siz	TF binding site mE1_TFBS_Trl
2L	2981571	2L_2981571_SNP [dm3] 2L_2981571_SNP [dm6]	G	A	2.835e^-4	0.838	SYNONYMOUS_CODING Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3272852	3L_3272852_SNP [dm3] 3L_3272852_SNP [dm6]	C	G	2.841e^-4	0.838	INTRON CG14960
3R	16307389	3R_16307389_SNP [dm3] 3R_20481667_SNP [dm6]	T	G	2.855e^-4	0.838	INTRON Gfrl
3L	7754330	3L_7754330_SNP [dm3] 3L_7761230_SNP [dm6]	T	A	2.856e^-4	0.838	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2R	8461701	2R_8461701_SNP [dm3] 2R_12574196_SNP [dm6]	A	G	2.862e^-4	0.838	INTRON ClC-b	TF binding site mE1_TFBS_HSA
X	7591906	X_7591906_SNP [dm3] X_7697873_SNP [dm6]	C	A	2.866e^-4	0.838	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18791081	2L_18791081_SNP [dm3] 2L_18791081_SNP [dm6]	T	A	2.868e^-4	0.838	INTRON ham
2R	17736508	2R_17736508_SNP [dm3] 2R_21849003_SNP [dm6]	C	T	2.869e^-4	0.838	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18820185	2L_18820185_SNP [dm3] 2L_18820185_SNP [dm6]	A	C	2.874e^-4	0.838	INTRON CG17324
2L	751258	2L_751258_SNP [dm3] 2L_751258_SNP [dm6]	A	G	2.875e^-4	0.838	INTRON GABA-B-R3
2R	6719417	2R_6719417_SNP [dm3] 2R_10831912_SNP [dm6]	A	G	2.876e^-4	0.838	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16481731	2R_16481731_SNP [dm3] 2R_20594226_SNP [dm6]	C	T	2.884e^-4	0.838	INTRON bl
3L	7577933	3L_7577933_SNP [dm3] 3L_7584833_SNP [dm6]	C	T	2.886e^-4	0.838	SYNONYMOUS_CODING CG14838
X	4703657	X_4703657_SNP [dm3] X_4809624_SNP [dm6]	T	G	2.891e^-4	0.838	INTERGENIC
2R	6742929	2R_6742929_SNP [dm3] 2R_10855424_SNP [dm6]	A	C	2.891e^-4	0.838	DOWNSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	16704943	3L_16704943_SNP [dm3] 3L_16711843_SNP [dm6]	A	T	2.892e^-4	0.838	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	17932870	3R_17932870_SNP [dm3] 3R_22107148_SNP [dm6]	A	G	2.906e^-4	0.838	INTRON CG5778
3L	17616482	3L_17616482_SNP [dm3] 3L_17623382_SNP [dm6]	C	T	2.907e^-4	0.838	INTRON CG7510	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	17889366	3R_17889366_SNP [dm3] 3R_22063644_SNP [dm6]	T	G	2.939e^-4	0.838	INTRON how
2L	12525308	2L_12525308_SNP [dm3] 2L_12525308_SNP [dm6]	G	A	2.942e^-4	0.838	INTRON bun
2R	18377139	2R_18377139_SNP [dm3] 2R_22489634_SNP [dm6]	C	T	2.946e^-4	0.838	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13669991	X_13669991_DEL [dm3] X_13775958_DEL [dm6]	ACTCGATA	A	2.957e^-4	0.838	SPLICE_SITE_REGION rdgB DOWNSTREAM rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	7440644	X_7440644_SNP [dm3] X_7546611_SNP [dm6]	C	G	2.960e^-4	0.838	INTRON CG32719
X	7591902	X_7591902_SNP [dm3] X_7697869_SNP [dm6]	G	A	2.979e^-4	0.838	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9173757	2L_9173757_SNP [dm3] 2L_9173757_SNP [dm6]	T	G	2.986e^-4	0.838	INTRON tai	TF binding site mE1_TFBS_kn
2R	18092046	2R_18092046_SNP [dm3] 2R_22204541_SNP [dm6]	G	A	2.988e^-4	0.838	SYNONYMOUS_CODING CG3292
2R	8444023	2R_8444023_SNP [dm3] 2R_12556518_SNP [dm6]	A	T	2.992e^-4	0.838	INTRON fra	TF binding site mE1_TFBS_cad
2L	16374411	2L_16374411_INS [dm3] 2L_16374411_INS [dm6]	A	AA	2.992e^-4	0.838	INTERGENIC
3R	11330636	3R_11330636_SNP [dm3] 3R_15504914_SNP [dm6]	C	T	2.994e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19159736	2L_19159736_SNP [dm3] 2L_19159736_SNP [dm6]	T	C	2.998e^-4	0.838	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	19636553	2L_19636553_SNP [dm3] 2L_19636553_SNP [dm6]	G	C	3.000e^-4	0.838	INTRON Lar
3R	13202558	3R_13202558_SNP [dm3] 3R_17376836_SNP [dm6]	T	C	3.004e^-4	0.838	SYNONYMOUS_CODING Brf
3R	10682321	3R_10682321_SNP [dm3] 3R_14856599_SNP [dm6]	T	A	3.009e^-4	0.838	INTRON btsz
2L	7414514	2L_7414514_SNP [dm3] 2L_7414514_SNP [dm6]	A	G	3.011e^-4	0.838	SYNONYMOUS_CODING chm
2R	16376688	2R_16376688_SNP [dm3] 2R_20489183_SNP [dm6]	C	A	3.011e^-4	0.838	INTERGENIC
2R	6158702	2R_6158702_SNP [dm3] 2R_10271197_SNP [dm6]	T	G	3.016e^-4	0.838	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv
2L	1712799	2L_1712799_SNP [dm3] 2L_1712799_SNP [dm6]	C	T	3.018e^-4	0.838	SYNONYMOUS_CODING frtz	TF binding site mE1_TFBS_chinmo
3R	11330626	3R_11330626_SNP [dm3] 3R_15504904_SNP [dm6]	A	T	3.032e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11955122	3L_11955122_SNP [dm3] 3L_11962022_SNP [dm6]	A	G	3.042e^-4	0.838	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	16454537	2R_16454537_SNP [dm3] 2R_20567032_SNP [dm6]	T	C	3.045e^-4	0.838	INTRON qsm
3R	9145463	3R_9145463_SNP [dm3] 3R_13319741_SNP [dm6]	T	C	3.050e^-4	0.838	UPSTREAM CG45080 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14021615	2R_14021615_DEL [dm3] 2R_18134110_DEL [dm6]	TACT	T	3.050e^-4	0.838	SPLICE_SITE_REGION Hsf INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10560986	3L_10560986_SNP [dm3] 3L_10567886_SNP [dm6]	G	A	3.052e^-4	0.838	INTRON A2bp1
3R	16309500	3R_16309500_SNP [dm3] 3R_20483778_SNP [dm6]	G	A	3.062e^-4	0.838	INTRON Gfrl
3R	14036622	3R_14036622_SNP [dm3] 3R_18210900_SNP [dm6]	C	A	3.064e^-4	0.838	INTRON CG7985
3L	12093007	3L_12093007_SNP [dm3] 3L_12099907_SNP [dm6]	A	G	3.065e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11529497	3L_11529497_INS [dm3] 3L_11536397_INS [dm6]	A	ATCA	3.070e^-4	0.838	INTRON Mob2	TF binding site mE1_TFBS_HSA
2L	18450075	2L_18450075_SNP [dm3] 2L_18450075_SNP [dm6]	C	T	3.073e^-4	0.838	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7900566	3R_7900566_SNP [dm3] 3R_12074844_SNP [dm6]	A	G	3.074e^-4	0.838	NON_SYNONYMOUS_CODING CG14741 INTRON CG14741
3R	18666342	3R_18666342_SNP [dm3] 3R_22840620_SNP [dm6]	A	T	3.076e^-4	0.838	INTERGENIC
3R	12244715	3R_12244715_SNP [dm3] 3R_16418993_SNP [dm6]	T	A	3.082e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
3L	13454158	3L_13454158_SNP [dm3] 3L_13461058_SNP [dm6]	A	G	3.086e^-4	0.838	SPLICE_SITE_REGION CG10738 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10559328	3L_10559328_SNP [dm3] 3L_10566228_SNP [dm6]	T	A	3.102e^-4	0.838	INTRON A2bp1
2L	3356503	2L_3356503_SNP [dm3] 2L_3356503_SNP [dm6]	A	C	3.121e^-4	0.838	INTERGENIC
3L	18612399	3L_18612399_DEL [dm3] 3L_18619299_DEL [dm6]	CGTG	T	3.122e^-4	0.838	DOWNSTREAM tRNA:CR32200 INTRON not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13545131	2R_13545131_SNP [dm3] 2R_17657626_SNP [dm6]	A	G	3.124e^-4	0.838	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
3L	10525905	3L_10525905_SNP [dm3] 3L_10532805_SNP [dm6]	A	T	3.125e^-4	0.838	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21915333	3L_21915333_SNP [dm3] 3L_21922233_SNP [dm6]	A	T	3.126e^-4	0.838	INTRON mub
3R	7277645	3R_7277645_SNP [dm3] 3R_11451923_SNP [dm6]	G	A	3.137e^-4	0.838	UPSTREAM sals DOWNSTREAM PGRP-LB INTRON CG17230
2R	20742043	2R_20742043_SNP [dm3] 2R_24854520_SNP [dm6]	C	A	3.138e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8439645	2R_8439645_SNP [dm3] 2R_12552140_SNP [dm6]	T	G	3.140e^-4	0.838	INTRON fra
2L	19819591	2L_19819591_SNP [dm3] 2L_19819591_SNP [dm6]	T	A	3.141e^-4	0.838	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
2L	9374102	2L_9374102_SNP [dm3] 2L_9374102_SNP [dm6]	G	A	3.141e^-4	0.838	DOWNSTREAM CR43865 INTRON Shawl
2L	19159078	2L_19159078_DEL [dm3] 2L_19159078_DEL [dm6]	TT	T	3.142e^-4	0.838	INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16429886	X_16429886_SNP [dm3] X_16535853_SNP [dm6]	C	G	3.149e^-4	0.838	INTERGENIC
3L	12547425	3L_12547425_SNP [dm3] 3L_12554325_SNP [dm6]	C	A	3.171e^-4	0.838	INTRON sowah
3L	14639649	3L_14639649_SNP [dm3] 3L_14646549_SNP [dm6]	C	A	3.174e^-4	0.838	INTRON dlp
2R	6774153	2R_6774153_SNP [dm3] 2R_10886648_SNP [dm6]	C	A	3.178e^-4	0.838	UPSTREAM CG30020 DOWNSTREAM CG18004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	19450120	X_19450120_SNP [dm3] X_19556087_SNP [dm6]	C	T	3.178e^-4	0.838	UPSTREAM mir-2499 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11330484	3L_11330484_SNP [dm3] 3L_11337384_SNP [dm6]	G	A	3.180e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_sens
3R	9313366	3R_9313366_SNP [dm3] 3R_13487644_SNP [dm6]	G	A	3.183e^-4	0.838	INTERGENIC
2L	9173761	2L_9173761_SNP [dm3] 2L_9173761_SNP [dm6]	C	T	3.185e^-4	0.838	INTRON tai	TF binding site mE1_TFBS_kn
2R	13544611	2R_13544611_SNP [dm3] 2R_17657106_SNP [dm6]	G	T	3.189e^-4	0.838	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14677754	3R_14677754_INS [dm3] 3R_18852032_INS [dm6]	A	AAATATTAAATATATAA...	3.201e^-4	0.838	UPSTREAM CR45633 & 1 other INTERGENIC
3R	21742234	3R_21742234_SNP [dm3] 3R_25916512_SNP [dm6]	G	C	3.212e^-4	0.838	SYNONYMOUS_CODING CG42235 INTRON CG42235
3L	22456658	3L_22456658_SNP [dm3] 3L_22463558_SNP [dm6]	C	A	3.217e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17457316	2R_17457316_SNP [dm3] 2R_21569811_SNP [dm6]	C	A	3.219e^-4	0.838	INTRON CG10440
2L	6972158	2L_6972158_DEL [dm3] 2L_6972158_DEL [dm6]	GTTT	A	3.221e^-4	0.838	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	7038471	3R_7038471_DEL [dm3] 3R_11212749_DEL [dm6]	GCGCCGTAG	G	3.221e^-4	0.838	UTR_3_PRIME ZnT86D
3L	10527398	3L_10527398_SNP [dm3] 3L_10534298_SNP [dm6]	G	A	3.222e^-4	0.838	INTRON A2bp1
2R	15108614	2R_15108614_SNP [dm3] 2R_19221109_SNP [dm6]	C	T	3.222e^-4	0.838	INTRON hppy
2R	8875364	2R_8875364_INS [dm3] 2R_12987859_INS [dm6]	T	AAGTTTACAGA...	3.223e^-4	0.838	INTERGENIC
3L	10527552	3L_10527552_SNP [dm3] 3L_10534452_SNP [dm6]	C	A	3.226e^-4	0.838	INTRON A2bp1
2L	19129738	2L_19129738_SNP [dm3] 2L_19129738_SNP [dm6]	T	C	3.233e^-4	0.838	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
3L	11115390	3L_11115390_SNP [dm3] 3L_11122290_SNP [dm6]	C	T	3.237e^-4	0.838	SYNONYMOUS_CODING Ufd1-like DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13227127	2R_13227127_MNP [dm3] 2R_17339622_MNP [dm6]	CACC	ATTT	3.245e^-4	0.838	INTRON mbl
2L	19477402	2L_19477402_SNP [dm3] 2L_19477402_SNP [dm6]	A	T	3.257e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19636578	2L_19636578_SNP [dm3] 2L_19636578_SNP [dm6]	G	A	3.262e^-4	0.838	INTRON Lar
2R	11697464	2R_11697464_SNP [dm3] 2R_15809959_SNP [dm6]	C	G	3.263e^-4	0.838	INTRON tun & 1 other	TF binding site mE1_TFBS_HSA
2R	12877940	2R_12877940_SNP [dm3] 2R_16990435_SNP [dm6]	T	A	3.265e^-4	0.838	INTRON Cbp53E	TF binding site mE1_TFBS_HSA
2L	11953790	2L_11953790_DEL [dm3] 2L_11953790_DEL [dm6]	CTGATAAGATGGCTTTGATC...	C	3.267e^-4	0.838	UPSTREAM bft EXON CR43314
3R	26610318	3R_26610318_SNP [dm3] 3R_30784596_SNP [dm6]	T	G	3.268e^-4	0.838	NON_SYNONYMOUS_CODING zfh1 UPSTREAM CR45189	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17729160	X_17729160_INS [dm3] X_17835127_INS [dm6]	T	TT	3.270e^-4	0.838	INTRON CG6398
3L	9391369	3L_9391369_SNP [dm3] 3L_9398269_SNP [dm6]	T	A	3.274e^-4	0.838	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	9391370	3L_9391370_SNP [dm3] 3L_9398270_SNP [dm6]	C	T	3.274e^-4	0.838	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2R	14930617	2R_14930617_SNP [dm3] 2R_19043112_SNP [dm6]	A	T	3.277e^-4	0.838	INTERGENIC
3L	21915282	3L_21915282_SNP [dm3] 3L_21922182_SNP [dm6]	C	T	3.278e^-4	0.838	INTRON mub
3R	22506664	3R_22506664_SNP [dm3] 3R_26680942_SNP [dm6]	A	T	3.281e^-4	0.838	INTRON beat-VII
2L	18778667	2L_18778667_SNP [dm3] 2L_18778667_SNP [dm6]	A	G	3.282e^-4	0.838	INTRON ham	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14612416	3R_14612416_SNP [dm3] 3R_18786694_SNP [dm6]	C	T	3.288e^-4	0.838	INTRON CG7720
3L	14142634	3L_14142634_SNP [dm3] 3L_14149534_SNP [dm6]	G	A	3.291e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19630617	2L_19630617_SNP [dm3] 2L_19630617_SNP [dm6]	G	A	3.293e^-4	0.838	INTRON Lar
3L	10550468	3L_10550468_SNP [dm3] 3L_10557368_SNP [dm6]	T	G	3.293e^-4	0.838	UTR_3_PRIME CG6527 DOWNSTREAM CG6527 INTRON A2bp1
3L	20031355	3L_20031355_SNP [dm3] 3L_20038255_SNP [dm6]	A	G	3.293e^-4	0.838	INTERGENIC
2L	20907730	2L_20907730_SNP [dm3] 2L_20907730_SNP [dm6]	T	C	3.294e^-4	0.838	INTRON sky & 1 other
3L	14380260	3L_14380260_SNP [dm3] 3L_14387160_SNP [dm6]	G	T	3.296e^-4	0.838	INTERGENIC
3R	26610369	3R_26610369_SNP [dm3] 3R_30784647_SNP [dm6]	A	G	3.301e^-4	0.838	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12503523	2R_12503523_SNP [dm3] 2R_16616018_SNP [dm6]	A	G	3.304e^-4	0.838	INTRON CG5065	TF binding site mE1_TFBS_Trl
3L	15634188	3L_15634188_SNP [dm3] 3L_15641088_SNP [dm6]	T	A	3.307e^-4	0.838	INTRON comm3
2R	20132942	2R_20132942_SNP [dm3] 2R_24245419_SNP [dm6]	C	T	3.315e^-4	0.838	INTRON nord
2L	3368831	2L_3368831_SNP [dm3] 2L_3368831_SNP [dm6]	C	T	3.321e^-4	0.838	INTRON CG34394
3L	14368953	3L_14368953_SNP [dm3] 3L_14375853_SNP [dm6]	T	G	3.333e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10529633	3L_10529633_SNP [dm3] 3L_10536533_SNP [dm6]	A	T	3.335e^-4	0.838	INTRON A2bp1
2R	11707009	2R_11707009_SNP [dm3] 2R_15819504_SNP [dm6]	G	A	3.342e^-4	0.838	SYNONYMOUS_CODING CG33465 INTRON tun
X	12635120	X_12635120_DEL [dm3] X_12741087_DEL [dm6]	AATA	A	3.344e^-4	0.838	INTRON Smr
X	7150937	X_7150937_SNP [dm3] X_7256904_SNP [dm6]	A	G	3.346e^-4	0.838	INTRON CR44357
2R	15108606	2R_15108606_SNP [dm3] 2R_19221101_SNP [dm6]	T	A	3.357e^-4	0.838	INTRON hppy
2R	20305253	2R_20305253_SNP [dm3] 2R_24417730_SNP [dm6]	A	G	3.362e^-4	0.838	SYNONYMOUS_CODING prom	TF binding site mE1_TFBS_chinmo
2R	8438815	2R_8438815_SNP [dm3] 2R_12551310_SNP [dm6]	C	G	3.364e^-4	0.838	INTRON fra
3L	1063365	3L_1063365_SNP [dm3] 3L_1063365_SNP [dm6]	C	T	3.365e^-4	0.838	INTRON bab1
X	19296955	X_19296955_SNP [dm3] X_19402922_SNP [dm6]	T	G	3.373e^-4	0.838	INTRON kek5
3L	13429258	3L_13429258_INS [dm3] 3L_13436158_INS [dm6]	A	ACCAAAGTACAAAA...	3.376e^-4	0.838	UPSTREAM CG10713 INTRON CG10154
2L	8302043	2L_8302043_SNP [dm3] 2L_8302043_SNP [dm6]	C	T	3.390e^-4	0.838	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
X	19790707	X_19790707_SNP [dm3] X_19896674_SNP [dm6]	A	G	3.391e^-4	0.838	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7368754	2L_7368754_SNP [dm3] 2L_7368754_SNP [dm6]	A	T	3.395e^-4	0.838	DOWNSTREAM CR44063 INTRON Wnt10
3R	8073020	3R_8073020_SNP [dm3] 3R_12247298_SNP [dm6]	T	C	3.396e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	8073036	3R_8073036_SNP [dm3] 3R_12247314_SNP [dm6]	C	T	3.399e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	19138366	2L_19138366_SNP [dm3] 2L_19138366_SNP [dm6]	C	T	3.400e^-4	0.838	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13894198	2L_13894198_SNP [dm3] 2L_13894198_SNP [dm6]	C	G	3.402e^-4	0.838	UPSTREAM CenG1A INTRON CenG1A	TF binding site mE1_TFBS_cad
2L	18787218	2L_18787218_SNP [dm3] 2L_18787218_SNP [dm6]	A	C	3.403e^-4	0.838	UTR_5_PRIME ham INTRON ham	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14930693	2R_14930693_DEL [dm3] 2R_19043188_DEL [dm6]	CCGACTTAGTTCA...	C	3.405e^-4	0.838	INTERGENIC
2R	15193469	2R_15193469_SNP [dm3] 2R_19305964_SNP [dm6]	G	A	3.410e^-4	0.838	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7703438	X_7703438_SNP [dm3] X_7809405_SNP [dm6]	G	T	3.413e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6699676	2L_6699676_SNP [dm3] 2L_6699676_SNP [dm6]	C	T	3.420e^-4	0.838	INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3176559	2L_3176559_SNP [dm3] 2L_3176559_SNP [dm6]	T	A	3.428e^-4	0.838	INTRON CG34393
2R	9066457	2R_9066457_SNP [dm3] 2R_13178952_SNP [dm6]	T	G	3.429e^-4	0.838	SYNONYMOUS_CODING CG17724 UTR_3_PRIME seq & 1 other DOWNSTREAM seq	TF binding site mE1_TFBS_cad
2L	11934309	2L_11934309_SNP [dm3] 2L_11934309_SNP [dm6]	T	A	3.441e^-4	0.838	UPSTREAM Or33a INTERGENIC
3R	17093472	3R_17093472_SNP [dm3] 3R_21267750_SNP [dm6]	T	G	3.442e^-4	0.838	INTRON Rab1	TF binding site BDTNP1_TFBS_dl
2R	13543090	2R_13543090_SNP [dm3] 2R_17655585_SNP [dm6]	C	T	3.444e^-4	0.838	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12215370	X_12215370_SNP [dm3] X_12321337_SNP [dm6]	A	T	3.444e^-4	0.838	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
2L	11210184	2L_11210184_SNP [dm3] 2L_11210184_SNP [dm6]	G	T	3.444e^-4	0.838	UPSTREAM ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18970602	3R_18970602_SNP [dm3] 3R_23144880_SNP [dm6]	G	A	3.446e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	6745448	2R_6745448_SNP [dm3] 2R_10857943_SNP [dm6]	A	G	3.448e^-4	0.838	INTRON CG30015
3R	9759805	3R_9759805_SNP [dm3] 3R_13934083_SNP [dm6]	C	T	3.454e^-4	0.838	INTERGENIC
3L	16225226	3L_16225226_SNP [dm3] 3L_16232126_SNP [dm6]	A	C	3.459e^-4	0.838	UTR_5_PRIME MED10 UPSTREAM PDCD-5 DOWNSTREAM CG5027	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18306604	3L_18306604_SNP [dm3] 3L_18313504_SNP [dm6]	C	A	3.459e^-4	0.838	INTERGENIC
3L	15392820	3L_15392820_SNP [dm3] 3L_15399720_SNP [dm6]	C	T	3.470e^-4	0.838	INTERGENIC
3R	19108068	3R_19108068_SNP [dm3] 3R_23282346_SNP [dm6]	G	T	3.482e^-4	0.838	INTRON Cdc16	TF binding site mE1_TFBS_sens
3R	17933048	3R_17933048_INS [dm3] 3R_22107326_INS [dm6]	A	AA	3.486e^-4	0.838	INTRON CG5778
2L	4065329	2L_4065329_SNP [dm3] 2L_4065329_SNP [dm6]	A	T	3.488e^-4	0.838	INTRON ed
2R	6742777	2R_6742777_SNP [dm3] 2R_10855272_SNP [dm6]	G	A	3.489e^-4	0.838	DOWNSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
X	12635086	X_12635086_SNP [dm3] X_12741053_SNP [dm6]	A	C	3.490e^-4	0.838	INTRON Smr
2L	4065326	2L_4065326_SNP [dm3] 2L_4065326_SNP [dm6]	A	G	3.491e^-4	0.838	INTRON ed
2L	20560484	2L_20560484_SNP [dm3] 2L_20560484_SNP [dm6]	T	A	3.499e^-4	0.838	INTERGENIC
2R	6751514	2R_6751514_SNP [dm3] 2R_10864009_SNP [dm6]	T	G	3.503e^-4	0.838	INTRON CG30015
X	13338159	X_13338159_INS [dm3] X_13444126_INS [dm6]	A	AG	3.503e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14930662	2R_14930662_SNP [dm3] 2R_19043157_SNP [dm6]	A	G	3.503e^-4	0.838	INTERGENIC
2L	3396175	2L_3396175_SNP [dm3] 2L_3396175_SNP [dm6]	C	T	3.507e^-4	0.838	INTERGENIC
2L	9948046	2L_9948046_SNP [dm3] 2L_9948046_SNP [dm6]	G	C	3.511e^-4	0.838	UPSTREAM CG5853 INTERGENIC
2R	20850770	2R_20850770_SNP [dm3] 2R_24963247_SNP [dm6]	T	C	3.512e^-4	0.838	UTR_5_PRIME CG2765 UPSTREAM CG2765 INTRON CG2765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7407267	2L_7407267_SNP [dm3] 2L_7407267_SNP [dm6]	T	C	3.512e^-4	0.838	INTRON CG5177
2R	14184870	2R_14184870_SNP [dm3] 2R_18297365_SNP [dm6]	G	C	3.515e^-4	0.838	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
2L	1711120	2L_1711120_SNP [dm3] 2L_1711120_SNP [dm6]	G	A	3.518e^-4	0.838	SYNONYMOUS_CODING mRpL48 UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6858567	X_6858567_SNP [dm3] X_6964534_SNP [dm6]	A	T	3.518e^-4	0.838	INTRON CG32732 & 1 other
X	19194668	X_19194668_SNP [dm3] X_19300635_SNP [dm6]	T	A	3.523e^-4	0.838	DOWNSTREAM CG8051 INTERGENIC	transposable element FlyBase
2R	17777091	2R_17777091_SNP [dm3] 2R_21889586_SNP [dm6]	G	T	3.530e^-4	0.838	INTRON Fili
2L	18779784	2L_18779784_SNP [dm3] 2L_18779784_SNP [dm6]	A	G	3.540e^-4	0.838	INTRON ham	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	9717397	3L_9717397_SNP [dm3] 3L_9724297_SNP [dm6]	C	T	3.541e^-4	0.838	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14628532	2L_14628532_SNP [dm3] 2L_14628532_SNP [dm6]	A	T	3.579e^-4	0.838	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12243741	3R_12243741_SNP [dm3] 3R_16418019_SNP [dm6]	A	G	3.584e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
3R	22135781	3R_22135781_SNP [dm3] 3R_26310059_SNP [dm6]	T	C	3.586e^-4	0.838	INTERGENIC
2R	8446948	2R_8446948_SNP [dm3] 2R_12559443_SNP [dm6]	T	A	3.587e^-4	0.838	INTRON fra
3R	15505454	3R_15505454_SNP [dm3] 3R_19679732_SNP [dm6]	G	A	3.590e^-4	0.838	INTRON Naam
2R	15054647	2R_15054647_SNP [dm3] 2R_19167142_SNP [dm6]	G	A	3.604e^-4	0.838	INTRON CG10737	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7023540	3L_7023540_SNP [dm3] 3L_7030440_SNP [dm6]	T	A	3.607e^-4	0.838	INTRON Mp
3L	10560842	3L_10560842_SNP [dm3] 3L_10567742_SNP [dm6]	T	A	3.612e^-4	0.838	INTRON A2bp1
2L	7973465	2L_7973465_SNP [dm3] 2L_7973465_SNP [dm6]	G	T	3.618e^-4	0.838	INTRON Snoo
2R	3986113	2R_3986113_SNP [dm3] 2R_8098608_SNP [dm6]	G	A	3.623e^-4	0.838	UPSTREAM CG11210 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
3L	18719844	3L_18719844_SNP [dm3] 3L_18726744_SNP [dm6]	G	A	3.630e^-4	0.838	INTERGENIC
2L	19177169	2L_19177169_SNP [dm3] 2L_19177169_SNP [dm6]	C	A	3.637e^-4	0.838	UTR_3_PRIME brat INTRON brat
2R	10714050	2R_10714050_SNP [dm3] 2R_14826545_SNP [dm6]	T	G	3.640e^-4	0.838	INTERGENIC
2L	8398189	2L_8398189_SNP [dm3] 2L_8398189_SNP [dm6]	A	G	3.647e^-4	0.838	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
3R	21736024	3R_21736024_SNP [dm3] 3R_25910302_SNP [dm6]	C	T	3.650e^-4	0.838	INTRON CG42235
X	15317694	X_15317694_SNP [dm3] X_15423661_SNP [dm6]	C	T	3.652e^-4	0.838	INTRON Cngl
X	20857904	X_20857904_SNP [dm3] X_20986877_SNP [dm6]	C	G	3.655e^-4	0.838	INTERGENIC
X	20858050	X_20858050_SNP [dm3] X_20987023_SNP [dm6]	A	T	3.655e^-4	0.838	INTERGENIC
3L	16415874	3L_16415874_SNP [dm3] 3L_16422774_SNP [dm6]	C	T	3.658e^-4	0.838	DOWNSTREAM dsx-c73A INTRON CG33158
2L	7411886	2L_7411886_SNP [dm3] 2L_7411886_SNP [dm6]	C	G	3.665e^-4	0.838	UTR_3_PRIME CG15818 UPSTREAM chm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	9022687	3R_9022687_DEL [dm3] 3R_13196965_DEL [dm6]	GA	G	3.679e^-4	0.838	INTERGENIC
X	14321465	X_14321465_SNP [dm3] X_14427432_SNP [dm6]	T	A	3.689e^-4	0.838	INTRON dpr8
3L	7754480	3L_7754480_SNP [dm3] 3L_7761380_SNP [dm6]	A	G	3.692e^-4	0.838	UTR_5_PRIME Hn INTRON Hn
3L	9758107	3L_9758107_SNP [dm3] 3L_9765007_SNP [dm6]	C	T	3.694e^-4	0.838	INTRON CG8177
X	2243102	X_2243102_SNP [dm3] X_2349069_SNP [dm6]	A	G	3.699e^-4	0.838	SYNONYMOUS_CODING ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15108661	2R_15108661_SNP [dm3] 2R_19221156_SNP [dm6]	C	T	3.700e^-4	0.838	INTRON hppy
3L	10525895	3L_10525895_SNP [dm3] 3L_10532795_SNP [dm6]	G	A	3.702e^-4	0.838	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19852434	2L_19852434_SNP [dm3] 2L_19852434_SNP [dm6]	C	T	3.702e^-4	0.838	INTRON sick
2L	19159312	2L_19159312_DEL [dm3] 2L_19159312_DEL [dm6]	CAT	C	3.703e^-4	0.838	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
3R	9175718	3R_9175718_SNP [dm3] 3R_13349996_SNP [dm6]	A	G	3.703e^-4	0.838	INTERGENIC
3R	9200615	3R_9200615_SNP [dm3] 3R_13374893_SNP [dm6]	C	A	3.711e^-4	0.838	INTRON CG9813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6797474	3R_6797474_SNP [dm3] 3R_10971752_SNP [dm6]	C	T	3.712e^-4	0.838	UPSTREAM CG34114 INTERGENIC
2R	8797065	2R_8797065_SNP [dm3] 2R_12909560_SNP [dm6]	A	G	3.713e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16397468	3R_16397468_SNP [dm3] 3R_20571746_SNP [dm6]	G	A	3.718e^-4	0.838	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4490893	2L_4490893_SNP [dm3] 2L_4490893_SNP [dm6]	A	G	3.722e^-4	0.838	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8765085	X_8765085_SNP [dm3] X_8871052_SNP [dm6]	T	C	3.736e^-4	0.838	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
2L	12076769	2L_12076769_SNP [dm3] 2L_12076769_SNP [dm6]	T	A	3.739e^-4	0.838	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6505216	2R_6505216_SNP [dm3] 2R_10617711_SNP [dm6]	G	A	3.740e^-4	0.838	UTR_5_PRIME CG11883 DOWNSTREAM psq	TF binding site mE1_TFBS_Trl
2L	3843137	2L_3843137_SNP [dm3] 2L_3843137_SNP [dm6]	A	C	3.748e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	16704950	3L_16704950_SNP [dm3] 3L_16711850_SNP [dm6]	G	A	3.749e^-4	0.838	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14677647	3R_14677647_DEL [dm3] 3R_18851925_DEL [dm6]	ACAGTTATATT...	G	3.751e^-4	0.838	UPSTREAM CR45633 & 1 other INTERGENIC
3L	12093011	3L_12093011_SNP [dm3] 3L_12099911_SNP [dm6]	T	C	3.757e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14154819	3L_14154819_SNP [dm3] 3L_14161719_SNP [dm6]	A	G	3.759e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
2R	8582075	2R_8582075_SNP [dm3] 2R_12694570_SNP [dm6]	T	C	3.759e^-4	0.838	INTERGENIC
X	18197287	X_18197287_SNP [dm3] X_18303254_SNP [dm6]	T	A	3.761e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15522559	3R_15522559_SNP [dm3] 3R_19696837_SNP [dm6]	A	C	3.762e^-4	0.838	INTRON Naam
X	6858513	X_6858513_SNP [dm3] X_6964480_SNP [dm6]	A	T	3.762e^-4	0.838	INTRON CG32732 & 1 other
2L	4490890	2L_4490890_SNP [dm3] 2L_4490890_SNP [dm6]	A	G	3.765e^-4	0.838	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21847463	3L_21847463_SNP [dm3] 3L_21854363_SNP [dm6]	G	T	3.779e^-4	0.838	UPSTREAM tRNA:CR32449 INTRON mub
2R	20765564	2R_20765564_SNP [dm3] 2R_24878041_SNP [dm6]	C	T	3.782e^-4	0.838	INTRON CG44247	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18855621	2R_18855621_SNP [dm3] 2R_22968098_SNP [dm6]	T	C	3.787e^-4	0.838	INTERGENIC
3L	10456415	3L_10456415_SNP [dm3] 3L_10463315_SNP [dm6]	A	G	3.791e^-4	0.838	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15608324	2L_15608324_SNP [dm3] 2L_15608324_SNP [dm6]	A	G	3.801e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	3.809e^-4	0.838	INTERGENIC
X	16611405	X_16611405_SNP [dm3] X_16717372_SNP [dm6]	T	C	3.819e^-4	0.838	INTRON CG34325
2R	7867784	2R_7867784_SNP [dm3] 2R_11980279_SNP [dm6]	C	T	3.819e^-4	0.838	DOWNSTREAM CG33145 INTRON CG30037	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20844197	3R_20844197_SNP [dm3] 3R_25018475_SNP [dm6]	A	G	3.821e^-4	0.838	SYNONYMOUS_CODING tnc
3L	13741755	3L_13741755_SNP [dm3] 3L_13748655_SNP [dm6]	G	T	3.830e^-4	0.838	INTRON bru-3
3L	15392388	3L_15392388_SNP [dm3] 3L_15399288_SNP [dm6]	T	A	3.836e^-4	0.838	INTERGENIC
X	16429554	X_16429554_SNP [dm3] X_16535521_SNP [dm6]	C	A	3.846e^-4	0.838	INTERGENIC
2L	9522847	2L_9522847_SNP [dm3] 2L_9522847_SNP [dm6]	C	T	3.853e^-4	0.838	INTRON Oatp30B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20844206	3R_20844206_SNP [dm3] 3R_25018484_SNP [dm6]	T	C	3.854e^-4	0.838	SYNONYMOUS_CODING tnc
3R	24089710	3R_24089710_SNP [dm3] 3R_28263988_SNP [dm6]	T	C	3.860e^-4	0.838	NON_SYNONYMOUS_CODING CG43124 UPSTREAM CG43125
3R	14015486	3R_14015486_SNP [dm3] 3R_18189764_SNP [dm6]	G	A	3.860e^-4	0.838	SYNONYMOUS_CODING MED17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20754428	2R_20754428_SNP [dm3] 2R_24866905_SNP [dm6]	C	G	3.869e^-4	0.838	INTERGENIC
3L	16704999	3L_16704999_SNP [dm3] 3L_16711899_SNP [dm6]	A	T	3.884e^-4	0.838	UPSTREAM Dab & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19904863	3R_19904863_SNP [dm3] 3R_24079141_SNP [dm6]	A	C	3.900e^-4	0.838	INTRON 4EHP
3R	11718652	3R_11718652_SNP [dm3] 3R_15892930_SNP [dm6]	T	A	3.903e^-4	0.838	INTRON CG14877
3L	10560991	3L_10560991_SNP [dm3] 3L_10567891_SNP [dm6]	C	T	3.906e^-4	0.838	INTRON A2bp1
3R	23846228	3R_23846228_SNP [dm3] 3R_28020506_SNP [dm6]	T	C	3.920e^-4	0.838	INTERGENIC
2L	21148739	2L_21148739_SNP [dm3] 2L_21148739_SNP [dm6]	G	A	3.922e^-4	0.838	UPSTREAM del INTERGENIC
3R	27638151	3R_27638151_SNP [dm3] 3R_31812429_SNP [dm6]	T	C	3.922e^-4	0.838	UPSTREAM RhoGAP100F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	18299161	2R_18299161_SNP [dm3] 2R_22411656_SNP [dm6]	T	A	3.925e^-4	0.838	UPSTREAM Mes4 & 1 other DOWNSTREAM qkr58E-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
X	6841238	X_6841238_SNP [dm3] X_6947205_SNP [dm6]	G	C	3.930e^-4	0.838	INTRON CG14431
3R	14402344	3R_14402344_SNP [dm3] 3R_18576622_SNP [dm6]	T	C	3.939e^-4	0.838	INTRON CG7694 & 1 other
2R	20993019	2R_20993019_SNP [dm3] 2R_25105496_SNP [dm6]	G	A	3.943e^-4	0.838	INTRON lov
2R	6438658	2R_6438658_SNP [dm3] 2R_10551153_SNP [dm6]	C	T	3.945e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8875722	2R_8875722_SNP [dm3] 2R_12988217_SNP [dm6]	T	G	3.950e^-4	0.838	INTERGENIC
3L	3664779	3L_3664779_SNP [dm3] 3L_3664779_SNP [dm6]	C	A	3.953e^-4	0.838	INTERGENIC
3L	22469759	3L_22469759_SNP [dm3] 3L_22476659_SNP [dm6]	C	T	3.957e^-4	0.838	DOWNSTREAM CG11425 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6112536	X_6112536_SNP [dm3] X_6218503_SNP [dm6]	C	T	3.960e^-4	0.838	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7959046	3R_7959046_SNP [dm3] 3R_12133324_SNP [dm6]	G	A	3.967e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6151019	2R_6151019_SNP [dm3] 2R_10263514_SNP [dm6]	T	C	3.967e^-4	0.838	EXON CR30009	TF binding site mE1_TFBS_HSA
3L	10236449	3L_10236449_SNP [dm3] 3L_10243349_SNP [dm6]	A	G	3.973e^-4	0.838	SYNONYMOUS_CODING Or67c UPSTREAM CR44541
3L	16415889	3L_16415889_SNP [dm3] 3L_16422789_SNP [dm6]	A	T	3.989e^-4	0.838	DOWNSTREAM dsx-c73A INTRON CG33158
3R	3960510	3R_3960510_SNP [dm3] 3R_8134788_SNP [dm6]	A	T	3.989e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10527973	3L_10527973_SNP [dm3] 3L_10534873_SNP [dm6]	A	C	3.994e^-4	0.838	INTRON A2bp1
2R	11312939	2R_11312939_SNP [dm3] 2R_15425434_SNP [dm6]	T	C	3.997e^-4	0.838	START_GAINED CG43729 UTR_5_PRIME CG43729 INTRON CG43729	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3138349	3R_3138349_SNP [dm3] 3R_7312627_SNP [dm6]	C	A	3.997e^-4	0.838	EXON CR44334	TF binding site BDTNP1_TFBS_dl
2R	20993976	2R_20993976_SNP [dm3] 2R_25106453_SNP [dm6]	C	T	3.999e^-4	0.838	INTRON lov
3L	9363225	3L_9363225_SNP [dm3] 3L_9370125_SNP [dm6]	C	T	4.000e^-4	0.838	UTR_3_PRIME CG4452 DOWNSTREAM Fdxh	TF binding site BDTNP1_TFBS_dl
X	18197288	X_18197288_SNP [dm3] X_18303255_SNP [dm6]	G	A	4.009e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10725746	3L_10725746_SNP [dm3] 3L_10732646_SNP [dm6]	T	C	4.010e^-4	0.838	INTERGENIC
3R	14446847	3R_14446847_SNP [dm3] 3R_18621125_SNP [dm6]	T	A	4.010e^-4	0.838	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10739900	3R_10739900_SNP [dm3] 3R_14914178_SNP [dm6]	A	G	4.011e^-4	0.838	INTERGENIC
2R	14551488	2R_14551488_SNP [dm3] 2R_18663983_SNP [dm6]	T	A	4.017e^-4	0.838	DOWNSTREAM CG33136 INTERGENIC
3R	25552909	3R_25552909_SNP [dm3] 3R_29727187_SNP [dm6]	T	G	4.035e^-4	0.838	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	17296797	3R_17296797_SNP [dm3] 3R_21471075_SNP [dm6]	G	A	4.038e^-4	0.838	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3665049	3L_3665049_SNP [dm3] 3L_3665049_SNP [dm6]	C	T	4.039e^-4	0.838	INTERGENIC
2R	1598297	2R_1598297_SNP [dm3] 2R_5710792_SNP [dm6]	A	C	4.039e^-4	0.838	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24174817	3R_24174817_SNP [dm3] 3R_28349095_SNP [dm6]	C	G	4.041e^-4	0.838	INTERGENIC
3R	1100638	3R_1100638_SNP [dm3] 3R_5274916_SNP [dm6]	A	G	4.042e^-4	0.838	DOWNSTREAM CG31538 INTRON mtd
3R	9386746	3R_9386746_SNP [dm3] 3R_13561024_SNP [dm6]	A	T	4.043e^-4	0.838	INTERGENIC
3L	7406417	3L_7406417_SNP [dm3] 3L_7413317_SNP [dm6]	T	C	4.047e^-4	0.838	INTERGENIC
3R	19179000	3R_19179000_SNP [dm3] 3R_23353278_SNP [dm6]	T	C	4.054e^-4	0.838	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10682585	3R_10682585_SNP [dm3] 3R_14856863_SNP [dm6]	G	T	4.056e^-4	0.838	INTRON btsz
3L	10527571	3L_10527571_SNP [dm3] 3L_10534471_SNP [dm6]	C	G	4.066e^-4	0.838	INTRON A2bp1
3L	10527572	3L_10527572_SNP [dm3] 3L_10534472_SNP [dm6]	G	C	4.066e^-4	0.838	INTRON A2bp1
2L	11930551	2L_11930551_SNP [dm3] 2L_11930551_SNP [dm6]	G	A	4.069e^-4	0.838	INTERGENIC
3R	10682594	3R_10682594_SNP [dm3] 3R_14856872_SNP [dm6]	A	G	4.080e^-4	0.838	INTRON btsz
3R	18778421	3R_18778421_SNP [dm3] 3R_22952699_SNP [dm6]	G	A	4.081e^-4	0.838	INTRON klg
3R	18188166	3R_18188166_DEL [dm3] 3R_22362444_DEL [dm6]	TACTGGTTTTATCAGAT...	T	4.086e^-4	0.838	UPSTREAM CG7071 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11739369	3R_11739369_SNP [dm3] 3R_15913647_SNP [dm6]	T	C	4.094e^-4	0.838	SYNONYMOUS_CODING CG45105 UTR_3_PRIME CG45105 INTRON CG45105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	10011594	2L_10011594_SNP [dm3] 2L_10011594_SNP [dm6]	C	A	4.112e^-4	0.838	INTRON Trp1
3L	10560796	3L_10560796_SNP [dm3] 3L_10567696_SNP [dm6]	A	T	4.113e^-4	0.838	INTRON A2bp1
2R	7913093	2R_7913093_SNP [dm3] 2R_12025588_SNP [dm6]	T	C	4.114e^-4	0.838	UPSTREAM CG8964 DOWNSTREAM Mppe INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14647451	3R_14647451_SNP [dm3] 3R_18821729_SNP [dm6]	T	C	4.132e^-4	0.838	INTRON CG18208
2L	10007421	2L_10007421_SNP [dm3] 2L_10007421_SNP [dm6]	G	T	4.132e^-4	0.838	SYNONYMOUS_CODING CG4747
3L	14649200	3L_14649200_SNP [dm3] 3L_14656100_SNP [dm6]	T	G	4.136e^-4	0.838	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11984764	2L_11984764_SNP [dm3] 2L_11984764_SNP [dm6]	A	G	4.137e^-4	0.838	SYNONYMOUS_CODING CG6686 UTR_3_PRIME CG6686 DOWNSTREAM CG16965
2L	16493387	2L_16493387_SNP [dm3] 2L_16493387_SNP [dm6]	T	C	4.144e^-4	0.838	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	4010401	3R_4010401_SNP [dm3] 3R_8184679_SNP [dm6]	C	G	4.153e^-4	0.838	INTERGENIC
3R	21742270	3R_21742270_SNP [dm3] 3R_25916548_SNP [dm6]	T	C	4.154e^-4	0.838	SYNONYMOUS_CODING CG42235 INTRON CG42235
2R	10544454	2R_10544454_SNP [dm3] 2R_14656949_SNP [dm6]	T	C	4.165e^-4	0.838	NON_SYNONYMOUS_CODING Adgf-E
2L	5926107	2L_5926107_SNP [dm3] 2L_5926107_SNP [dm6]	G	C	4.167e^-4	0.838	UTR_5_PRIME dsf UPSTREAM CR43926
2L	7975101	2L_7975101_SNP [dm3] 2L_7975101_SNP [dm6]	A	G	4.174e^-4	0.838	INTRON Snoo
2L	7415629	2L_7415629_SNP [dm3] 2L_7415629_SNP [dm6]	T	G	4.178e^-4	0.838	INTRON chm
X	1100710	X_1100710_SNP [dm3] X_1206677_SNP [dm6]	A	T	4.185e^-4	0.838	UPSTREAM CG14624 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7372675	2L_7372675_SNP [dm3] 2L_7372675_SNP [dm6]	A	G	4.186e^-4	0.838	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	13377457	3L_13377457_SNP [dm3] 3L_13384357_SNP [dm6]	C	A	4.193e^-4	0.838	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2R	20834987	2R_20834987_SNP [dm3] 2R_24947464_SNP [dm6]	T	C	4.194e^-4	0.838	NON_SYNONYMOUS_CODING CG2790 DOWNSTREAM CG3770	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21624469	3R_21624469_SNP [dm3] 3R_25798747_SNP [dm6]	T	C	4.199e^-4	0.838	UPSTREAM CR43847 INTERGENIC
3R	17965172	3R_17965172_SNP [dm3] 3R_22139450_SNP [dm6]	G	A	4.204e^-4	0.838	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
2L	1932899	2L_1932899_DEL [dm3] 2L_1932899_DEL [dm6]	AA	A	4.206e^-4	0.838	INTRON CG7337
2L	3355123	2L_3355123_SNP [dm3] 2L_3355123_SNP [dm6]	T	A	4.207e^-4	0.838	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	20853156	2R_20853156_SNP [dm3] 2R_24965633_SNP [dm6]	A	G	4.209e^-4	0.838	NON_SYNONYMOUS_CODING CG30424 UPSTREAM CG2765	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1711262	2L_1711262_SNP [dm3] 2L_1711262_SNP [dm6]	C	G	4.214e^-4	0.838	NON_SYNONYMOUS_CODING mRpL48 UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9020261	3R_9020261_SNP [dm3] 3R_13194539_SNP [dm6]	G	A	4.217e^-4	0.838	INTERGENIC
3L	14504014	3L_14504014_SNP [dm3] 3L_14510914_SNP [dm6]	G	A	4.227e^-4	0.838	SYNONYMOUS_CODING bbg UPSTREAM bbg
3L	10858530	3L_10858530_SNP [dm3] 3L_10865430_SNP [dm6]	T	G	4.231e^-4	0.838	INTRON tna	TF binding site BDTNP1_TFBS_dl
3R	24475816	3R_24475816_SNP [dm3] 3R_28650094_SNP [dm6]	G	A	4.238e^-4	0.838	UTR_3_PRIME CG31050
X	2704236	X_2704236_SNP [dm3] X_2810203_SNP [dm6]	C	T	4.250e^-4	0.838	SYNONYMOUS_CODING CG12498 INTRON kirre
2L	1609300	2L_1609300_SNP [dm3] 2L_1609300_SNP [dm6]	A	G	4.252e^-4	0.838	DOWNSTREAM haf INTRON CG31935
X	16226965	X_16226965_DEL [dm3] X_16332932_DEL [dm6]	TC	T	4.253e^-4	0.838	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	17822509	3L_17822509_SNP [dm3] 3L_17829409_SNP [dm6]	G	A	4.256e^-4	0.838	SYNONYMOUS_CODING Grd
2L	19172287	2L_19172287_DEL [dm3] 2L_19172287_DEL [dm6]	TT	T	4.262e^-4	0.838	UTR_3_PRIME brat DOWNSTREAM brat INTRON brat
3R	18379974	3R_18379974_SNP [dm3] 3R_22554252_SNP [dm6]	C	T	4.263e^-4	0.838	UPSTREAM bond INTRON bond
2R	8627747	2R_8627747_SNP [dm3] 2R_12740242_SNP [dm6]	A	G	4.267e^-4	0.838	INTRON CG42663
2L	6938296	2L_6938296_SNP [dm3] 2L_6938296_SNP [dm6]	T	C	4.270e^-4	0.838	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_chinmo
2R	20935015	2R_20935015_SNP [dm3] 2R_25047492_SNP [dm6]	C	G	4.271e^-4	0.838	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	10525410	3L_10525410_SNP [dm3] 3L_10532310_SNP [dm6]	G	C	4.272e^-4	0.838	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8010192	3L_8010192_SNP [dm3] 3L_8017092_SNP [dm6]	A	T	4.278e^-4	0.838	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4846711	X_4846711_SNP [dm3] X_4952678_SNP [dm6]	C	T	4.283e^-4	0.838	SYNONYMOUS_CODING Ptp4E	TF binding site mE1_TFBS_cad
3R	13278516	3R_13278516_SNP [dm3] 3R_17452794_SNP [dm6]	G	A	4.295e^-4	0.838	INTERGENIC
3L	8952864	3L_8952864_DEL [dm3] 3L_8959764_DEL [dm6]	CTAAC	C	4.295e^-4	0.838	INTRON CG13313
3L	11119952	3L_11119952_SNP [dm3] 3L_11126852_SNP [dm6]	G	C	4.299e^-4	0.838	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12246226	X_12246226_SNP [dm3] X_12352193_SNP [dm6]	A	G	4.303e^-4	0.838	INTERGENIC
2L	9079822	2L_9079822_SNP [dm3] 2L_9079822_SNP [dm6]	C	G	4.309e^-4	0.838	INTERGENIC
2L	19157619	2L_19157619_SNP [dm3] 2L_19157619_SNP [dm6]	T	A	4.312e^-4	0.838	UPSTREAM brat DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9072343	3R_9072343_SNP [dm3] 3R_13246621_SNP [dm6]	T	C	4.333e^-4	0.838	UTR_5_PRIME Ace	TF binding site mE1_TFBS_cad
2L	3395900	2L_3395900_SNP [dm3] 2L_3395900_SNP [dm6]	G	A	4.335e^-4	0.838	INTERGENIC
2R	16842277	2R_16842277_SNP [dm3] 2R_20954772_SNP [dm6]	A	G	4.338e^-4	0.838	UTR_3_PRIME hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19836787	3R_19836787_SNP [dm3] 3R_24011065_SNP [dm6]	C	T	4.339e^-4	0.838	INTRON KrT95D
2L	5615988	2L_5615988_SNP [dm3] 2L_5615988_SNP [dm6]	C	A	4.344e^-4	0.838	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	8441431	2R_8441431_SNP [dm3] 2R_12553926_SNP [dm6]	A	G	4.344e^-4	0.838	INTRON fra	TF binding site mE1_TFBS_HSA
3L	10965003	3L_10965003_SNP [dm3] 3L_10971903_SNP [dm6]	C	G	4.346e^-4	0.838	UPSTREAM CG14147 INTERGENIC
3R	24437711	3R_24437711_SNP [dm3] 3R_28611989_SNP [dm6]	C	G	4.351e^-4	0.838	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19428888	X_19428888_SNP [dm3] X_19534855_SNP [dm6]	T	C	4.357e^-4	0.838	INTRON CG32532	TF binding site mE1_TFBS_chinmo
3R	10034383	3R_10034383_SNP [dm3] 3R_14208661_SNP [dm6]	T	C	4.357e^-4	0.838	INTRON Dop1R1
3L	10964950	3L_10964950_SNP [dm3] 3L_10971850_SNP [dm6]	C	A	4.358e^-4	0.838	UPSTREAM CG14147 INTERGENIC
2L	20907031	2L_20907031_SNP [dm3] 2L_20907031_SNP [dm6]	C	T	4.360e^-4	0.838	INTRON sky & 1 other
2L	12904222	2L_12904222_SNP [dm3] 2L_12904222_SNP [dm6]	C	G	4.360e^-4	0.838	INTERGENIC
2R	14362182	2R_14362182_SNP [dm3] 2R_18474677_SNP [dm6]	C	T	4.368e^-4	0.838	SYNONYMOUS_CODING CG30116
3R	10994633	3R_10994633_SNP [dm3] 3R_15168911_SNP [dm6]	C	A	4.370e^-4	0.838	INTRON Gyc88E
2R	20161110	2R_20161110_SNP [dm3] 2R_24273587_SNP [dm6]	C	G	4.372e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	1712028	2L_1712028_SNP [dm3] 2L_1712028_SNP [dm6]	A	T	4.376e^-4	0.838	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8952880	3L_8952880_SNP [dm3] 3L_8959780_SNP [dm6]	C	A	4.390e^-4	0.838	INTRON CG13313
X	16611404	X_16611404_SNP [dm3] X_16717371_SNP [dm6]	A	C	4.396e^-4	0.838	INTRON CG34325
2R	14930669	2R_14930669_SNP [dm3] 2R_19043164_SNP [dm6]	T	G	4.410e^-4	0.838	INTERGENIC
2L	10215938	2L_10215938_SNP [dm3] 2L_10215938_SNP [dm6]	A	G	4.412e^-4	0.838	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7209404	3L_7209404_SNP [dm3] 3L_7216304_SNP [dm6]	T	C	4.419e^-4	0.838	INTERGENIC
3R	15307553	3R_15307553_SNP [dm3] 3R_19481831_SNP [dm6]	A	G	4.421e^-4	0.838	SYNONYMOUS_CODING Dys
2L	9288353	2L_9288353_SNP [dm3] 2L_9288353_SNP [dm6]	A	C	4.426e^-4	0.838	INTRON Ggamma30A
X	21090146	X_21090146_SNP [dm3] X_21219119_SNP [dm6]	T	C	4.430e^-4	0.838	DOWNSTREAM CG32523 INTRON CG32521
3R	17813524	3R_17813524_SNP [dm3] 3R_21987802_SNP [dm6]	C	T	4.430e^-4	0.838	INTRON Eip93F
2L	7413338	2L_7413338_SNP [dm3] 2L_7413338_SNP [dm6]	G	C	4.434e^-4	0.838	INTRON chm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15002077	3R_15002077_SNP [dm3] 3R_19176355_SNP [dm6]	C	A	4.435e^-4	0.838	UPSTREAM CG14282 INTERGENIC
3R	10071770	3R_10071770_INS [dm3] 3R_14246048_INS [dm6]	T	GACGC	4.442e^-4	0.838	UPSTREAM CG9616 INTERGENIC
3L	9496595	3L_9496595_DEL [dm3] 3L_9503495_DEL [dm6]	AATATATAATATATATATAT...	CT	4.445e^-4	0.838	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14891476	3L_14891476_SNP [dm3] 3L_14898376_SNP [dm6]	A	T	4.445e^-4	0.838	INTERGENIC
3R	3269072	3R_3269072_DEL [dm3] 3R_7443350_DEL [dm6]	TATCAT	T	4.451e^-4	0.838	INTERGENIC
3L	1996345	3L_1996345_SNP [dm3] 3L_1996345_SNP [dm6]	C	T	4.454e^-4	0.838	INTERGENIC
X	3889506	X_3889506_SNP [dm3] X_3995473_SNP [dm6]	C	T	4.459e^-4	0.838	INTERGENIC
3L	11948964	3L_11948964_SNP [dm3] 3L_11955864_SNP [dm6]	C	T	4.460e^-4	0.838	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2R	15193023	2R_15193023_SNP [dm3] 2R_19305518_SNP [dm6]	T	G	4.461e^-4	0.838	NON_SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	14154806	3L_14154806_SNP [dm3] 3L_14161706_SNP [dm6]	A	G	4.468e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
3R	17965176	3R_17965176_SNP [dm3] 3R_22139454_SNP [dm6]	G	A	4.469e^-4	0.838	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
3L	18630107	3L_18630107_SNP [dm3] 3L_18637007_SNP [dm6]	G	A	4.469e^-4	0.838	INTRON MYPT-75D
3R	10034422	3R_10034422_SNP [dm3] 3R_14208700_SNP [dm6]	T	A	4.470e^-4	0.838	INTRON Dop1R1
2L	3354204	2L_3354204_SNP [dm3] 2L_3354204_SNP [dm6]	G	A	4.472e^-4	0.838	START_GAINED E23 UTR_5_PRIME E23 INTRON E23
3L	11957361	3L_11957361_SNP [dm3] 3L_11964261_SNP [dm6]	T	G	4.474e^-4	0.838	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11442177	2R_11442177_SNP [dm3] 2R_15554672_SNP [dm6]	T	C	4.482e^-4	0.838	UPSTREAM CG12963 INTERGENIC
2L	7411888	2L_7411888_SNP [dm3] 2L_7411888_SNP [dm6]	A	C	4.483e^-4	0.838	UTR_3_PRIME CG15818 UPSTREAM chm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2L	19159303	2L_19159303_SNP [dm3] 2L_19159303_SNP [dm6]	C	A	4.487e^-4	0.838	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Trl
3L	11115555	3L_11115555_SNP [dm3] 3L_11122455_SNP [dm6]	G	T	4.494e^-4	0.838	SYNONYMOUS_CODING Ufd1-like UPSTREAM CG42575 DOWNSTREAM mRpL2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9351053	2R_9351053_SNP [dm3] 2R_13463548_SNP [dm6]	G	C	4.496e^-4	0.838	INTRON arr
2L	11860258	2L_11860258_SNP [dm3] 2L_11860258_SNP [dm6]	T	C	4.500e^-4	0.838	INTRON Pde1c
2R	10550849	2R_10550849_SNP [dm3] 2R_14663344_SNP [dm6]	G	A	4.511e^-4	0.838	DOWNSTREAM CG12861 INTERGENIC
2R	13544141	2R_13544141_DEL [dm3] 2R_17656636_DEL [dm6]	AA	A	4.511e^-4	0.838	INTRON CCHa1-R
2R	20821427	2R_20821427_SNP [dm3] 2R_24933904_SNP [dm6]	A	C	4.512e^-4	0.838	INTRON CG30427
X	12781661	X_12781661_SNP [dm3] X_12887628_SNP [dm6]	G	A	4.514e^-4	0.838	INTRON Pde9

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.872e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07693
In_2R_NS	0.04236

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.7767	0.0557

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1914 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8439063	2R_8439063_SNP [dm3] 2R_12551558_SNP [dm6]	A	G	6.419e^-7	0.927	INTRON fra
2R	6740195	2R_6740195_SNP [dm3] 2R_10852690_SNP [dm6]	T	C	2.023e^-6	0.927	UPSTREAM CR45136 INTRON CG30015
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	3.142e^-6	0.927	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	4.572e^-6	0.927	INTRON AdipoR
3L	17403615	3L_17403615_DEL [dm3] 3L_17410515_DEL [dm6]	AA	A	5.148e^-6	0.927	INTRON blot
2R	19138652	2R_19138652_SNP [dm3] 2R_23251129_SNP [dm6]	T	A	5.594e^-6	0.927	INTERGENIC
3L	17405412	3L_17405412_SNP [dm3] 3L_17412312_SNP [dm6]	G	A	6.250e^-6	0.927	INTRON blot	TF binding site BDTNP1_TFBS_Med
3R	13202558	3R_13202558_SNP [dm3] 3R_17376836_SNP [dm6]	T	C	6.511e^-6	0.927	SYNONYMOUS_CODING Brf
2L	8238525	2L_8238525_SNP [dm3] 2L_8238525_SNP [dm6]	C	G	6.913e^-6	0.927	INTRON Pvr
3R	22245397	3R_22245397_SNP [dm3] 3R_26419675_SNP [dm6]	C	G	7.149e^-6	0.927	INTERGENIC
2R	8438815	2R_8438815_SNP [dm3] 2R_12551310_SNP [dm6]	C	G	7.347e^-6	0.927	INTRON fra
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	7.741e^-6	0.927	INTRON AdipoR
2L	2794005	2L_2794005_SNP [dm3] 2L_2794005_SNP [dm6]	A	G	8.436e^-6	0.927	INTRON Syt1
X	18195485	X_18195485_SNP [dm3] X_18301452_SNP [dm6]	G	C	8.697e^-6	0.927	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2548760	3L_2548760_SNP [dm3] 3L_2548760_SNP [dm6]	G	A	9.575e^-6	0.927	INTRON Spn
3R	18371244	3R_18371244_SNP [dm3] 3R_22545522_SNP [dm6]	C	A	1.096e^-5	0.927	INTRON AdipoR
3L	15392388	3L_15392388_SNP [dm3] 3L_15399288_SNP [dm6]	T	A	1.099e^-5	0.927	INTERGENIC
X	18195900	X_18195900_DEL [dm3] X_18301867_DEL [dm6]	TT	T	1.123e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18059354	3R_18059354_SNP [dm3] 3R_22233632_SNP [dm6]	C	G	1.154e^-5	0.927	INTRON SKIP
X	7882433	X_7882433_SNP [dm3] X_7988400_SNP [dm6]	T	C	1.246e^-5	0.927	INTERGENIC
3L	10231324	3L_10231324_SNP [dm3] 3L_10238224_SNP [dm6]	C	G	1.250e^-5	0.927	INTERGENIC
2R	6374645	2R_6374645_SNP [dm3] 2R_10487140_SNP [dm6]	C	T	1.250e^-5	0.927	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4269528	2L_4269528_SNP [dm3] 2L_4269528_SNP [dm6]	C	T	1.258e^-5	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8804148	2R_8804148_SNP [dm3] 2R_12916643_SNP [dm6]	T	C	1.288e^-5	0.927	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18371243	3R_18371243_SNP [dm3] 3R_22545521_SNP [dm6]	A	C	1.383e^-5	0.927	INTRON AdipoR
3R	18059183	3R_18059183_SNP [dm3] 3R_22233461_SNP [dm6]	G	A	1.471e^-5	0.927	INTRON SKIP
X	18193855	X_18193855_SNP [dm3] X_18299822_SNP [dm6]	A	G	1.551e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr
2L	18644620	2L_18644620_SNP [dm3] 2L_18644620_SNP [dm6]	A	T	1.740e^-5	0.927	INTRON MESR3
2L	9059061	2L_9059061_SNP [dm3] 2L_9059061_SNP [dm6]	T	A	1.771e^-5	0.927	INTRON CG31708
2L	9059122	2L_9059122_SNP [dm3] 2L_9059122_SNP [dm6]	A	C	1.840e^-5	0.927	INTRON CG31708
X	13365846	X_13365846_DEL [dm3] X_13471813_DEL [dm6]	TC	T	2.044e^-5	0.927	INTRON Neto
X	6543405	X_6543405_SNP [dm3] X_6649372_SNP [dm6]	T	C	2.062e^-5	0.927	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3176559	2L_3176559_SNP [dm3] 2L_3176559_SNP [dm6]	T	A	2.083e^-5	0.927	INTRON CG34393
X	6543399	X_6543399_SNP [dm3] X_6649366_SNP [dm6]	G	C	2.085e^-5	0.927	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7940624	3L_7940624_SNP [dm3] 3L_7947524_SNP [dm6]	G	C	2.143e^-5	0.927	UPSTREAM exex INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11834451	X_11834451_SNP [dm3] X_11940418_SNP [dm6]	A	T	2.190e^-5	0.927	INTRON cac
2L	8302043	2L_8302043_SNP [dm3] 2L_8302043_SNP [dm6]	C	T	2.381e^-5	0.927	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
2L	18820390	2L_18820390_SNP [dm3] 2L_18820390_SNP [dm6]	G	A	2.433e^-5	0.927	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
X	12865951	X_12865951_SNP [dm3] X_12971918_SNP [dm6]	A	T	2.435e^-5	0.927	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	517196	2L_517196_INS [dm3] 2L_517196_INS [dm6]	A	ACACACACACCAGCAAGCA...	2.497e^-5	0.927	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	8710710	2L_8710710_SNP [dm3] 2L_8710710_SNP [dm6]	C	T	2.508e^-5	0.927	INTRON raw
2L	18820407	2L_18820407_SNP [dm3] 2L_18820407_SNP [dm6]	A	G	2.526e^-5	0.927	NON_SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3L	18203808	3L_18203808_SNP [dm3] 3L_18210708_SNP [dm6]	A	G	2.615e^-5	0.927	INTERGENIC
2L	4007581	2L_4007581_SNP [dm3] 2L_4007581_SNP [dm6]	G	A	2.636e^-5	0.927	UPSTREAM CG43773 DOWNSTREAM CG15423 INTERGENIC
3L	7927722	3L_7927722_INS [dm3] 3L_7934622_INS [dm6]	T	TAAGTCTCAGT...	2.696e^-5	0.927	UPSTREAM syd INTRON syd	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	7967558	3L_7967558_SNP [dm3] 3L_7974458_SNP [dm6]	T	C	2.724e^-5	0.927	SYNONYMOUS_CODING CG8042 DOWNSTREAM HP4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	18192740	X_18192740_SNP [dm3] X_18298707_SNP [dm6]	A	T	2.812e^-5	0.927	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1517084	3L_1517084_SNP [dm3] 3L_1517084_SNP [dm6]	A	G	2.892e^-5	0.927	UTR_5_PRIME cue UPSTREAM Psa INTRON Psa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22245491	3R_22245491_SNP [dm3] 3R_26419769_SNP [dm6]	A	T	2.969e^-5	0.927	INTERGENIC
3R	13202531	3R_13202531_SNP [dm3] 3R_17376809_SNP [dm6]	C	T	3.137e^-5	0.927	INTRON Brf
3L	8703257	3L_8703257_SNP [dm3] 3L_8710157_SNP [dm6]	A	T	3.157e^-5	0.927	INTERGENIC	regulatory region REDfly_CRMs
3L	12928122	3L_12928122_SNP [dm3] 3L_12935022_SNP [dm6]	G	C	3.164e^-5	0.927	INTERGENIC
3R	19009084	3R_19009084_SNP [dm3] 3R_23183362_SNP [dm6]	G	A	3.198e^-5	0.927	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14432271	3L_14432271_SNP [dm3] 3L_14439171_SNP [dm6]	T	G	3.219e^-5	0.927	INTRON bbg
2R	11727560	2R_11727560_SNP [dm3] 2R_15840055_SNP [dm6]	G	T	3.231e^-5	0.927	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8443057	2R_8443057_SNP [dm3] 2R_12555552_SNP [dm6]	T	A	3.303e^-5	0.927	INTRON fra
3L	8703245	3L_8703245_SNP [dm3] 3L_8710145_SNP [dm6]	T	A	3.317e^-5	0.927	INTERGENIC	regulatory region REDfly_CRMs
2L	18821569	2L_18821569_SNP [dm3] 2L_18821569_SNP [dm6]	C	A	3.360e^-5	0.927	INTRON CG17324
2L	9059046	2L_9059046_SNP [dm3] 2L_9059046_SNP [dm6]	G	T	3.381e^-5	0.927	INTRON CG31708
X	21090146	X_21090146_SNP [dm3] X_21219119_SNP [dm6]	T	C	3.476e^-5	0.927	DOWNSTREAM CG32523 INTRON CG32521
X	744238	X_744238_SNP [dm3] X_850205_SNP [dm6]	C	T	3.572e^-5	0.927	INTRON CG43867
2R	15897440	2R_15897440_SNP [dm3] 2R_20009935_SNP [dm6]	A	G	3.592e^-5	0.927	INTERGENIC
X	18192665	X_18192665_SNP [dm3] X_18298632_SNP [dm6]	C	G	3.685e^-5	0.927	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	13761054	X_13761054_SNP [dm3] X_13867021_SNP [dm6]	T	A	3.686e^-5	0.927	UTR_3_PRIME mamo INTRON mamo
3R	18371371	3R_18371371_SNP [dm3] 3R_22545649_SNP [dm6]	A	G	3.834e^-5	0.927	INTRON AdipoR
X	15317694	X_15317694_SNP [dm3] X_15423661_SNP [dm6]	C	T	3.901e^-5	0.927	INTRON Cngl
X	18194051	X_18194051_SNP [dm3] X_18300018_SNP [dm6]	G	A	3.928e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_Kr mE1_TFBS_sbb
3R	19009096	3R_19009096_SNP [dm3] 3R_23183374_SNP [dm6]	T	C	3.984e^-5	0.927	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7927006	3L_7927006_SNP [dm3] 3L_7933906_SNP [dm6]	A	G	4.008e^-5	0.927	INTRON syd	TF binding site mE1_TFBS_cad
2R	19709480	2R_19709480_INS [dm3] 2R_23821957_INS [dm6]	C	CTCAGTATTTATACCCGAAT...	4.108e^-5	0.927	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3R	18059495	3R_18059495_SNP [dm3] 3R_22233773_SNP [dm6]	C	G	4.148e^-5	0.927	INTRON SKIP
2L	18823116	2L_18823116_SNP [dm3] 2L_18823116_SNP [dm6]	A	G	4.304e^-5	0.927	UPSTREAM CG17323 DOWNSTREAM CG17324 INTERGENIC
2L	4179678	2L_4179678_SNP [dm3] 2L_4179678_SNP [dm6]	T	A	4.412e^-5	0.927	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	6740189	2R_6740189_SNP [dm3] 2R_10852684_SNP [dm6]	T	C	4.442e^-5	0.927	UPSTREAM CR45136 INTRON CG30015
X	7747900	X_7747900_SNP [dm3] X_7853867_SNP [dm6]	G	C	4.538e^-5	0.927	SYNONYMOUS_CODING CG10920
2L	9058992	2L_9058992_SNP [dm3] 2L_9058992_SNP [dm6]	G	A	4.577e^-5	0.927	INTRON CG31708
2R	18581483	2R_18581483_SNP [dm3] 2R_22693978_SNP [dm6]	G	A	4.605e^-5	0.927	UTR_3_PRIME robo
3L	22784338	3L_22784338_SNP [dm3] 3L_22791238_SNP [dm6]	C	G	4.715e^-5	0.927	UTR_3_PRIME jim
2L	3176619	2L_3176619_SNP [dm3] 2L_3176619_SNP [dm6]	C	T	4.846e^-5	0.927	INTRON CG34393
3R	24475816	3R_24475816_SNP [dm3] 3R_28650094_SNP [dm6]	G	A	4.850e^-5	0.927	UTR_3_PRIME CG31050
X	15636564	X_15636564_SNP [dm3] X_15742531_SNP [dm6]	A	G	4.883e^-5	0.927	UTR_3_PRIME CG8944
X	12865993	X_12865993_SNP [dm3] X_12971960_SNP [dm6]	C	T	4.884e^-5	0.927	SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	15871762	3L_15871762_SNP [dm3] 3L_15878662_SNP [dm6]	G	T	4.946e^-5	0.927	INTRON pHCl
3R	19009049	3R_19009049_SNP [dm3] 3R_23183327_SNP [dm6]	A	C	4.970e^-5	0.927	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6542862	X_6542862_SNP [dm3] X_6648829_SNP [dm6]	C	T	4.976e^-5	0.927	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
3R	15006339	3R_15006339_SNP [dm3] 3R_19180617_SNP [dm6]	C	T	5.260e^-5	0.927	UPSTREAM CG31475 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2R	16151737	2R_16151737_SNP [dm3] 2R_20264232_SNP [dm6]	T	A	5.430e^-5	0.927	UPSTREAM plu & 1 other DOWNSTREAM CR43812 INTRON RpS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12867497	3L_12867497_SNP [dm3] 3L_12874397_SNP [dm6]	C	G	5.440e^-5	0.927	INTERGENIC
3L	2349997	3L_2349997_SNP [dm3] 3L_2349997_SNP [dm6]	A	C	5.444e^-5	0.927	INTERGENIC
2L	2928160	2L_2928160_SNP [dm3] 2L_2928160_SNP [dm6]	G	A	5.537e^-5	0.927	INTRON lilli
3R	18058687	3R_18058687_SNP [dm3] 3R_22232965_SNP [dm6]	A	G	5.660e^-5	0.927	INTRON SKIP
3R	22243125	3R_22243125_SNP [dm3] 3R_26417403_SNP [dm6]	A	T	5.691e^-5	0.927	INTERGENIC
2L	3674118	2L_3674118_SNP [dm3] 2L_3674118_SNP [dm6]	T	C	5.749e^-5	0.927	INTRON CG34340
3R	17380785	3R_17380785_SNP [dm3] 3R_21555063_SNP [dm6]	G	A	5.882e^-5	0.927	INTRON slou
3L	16057733	3L_16057733_SNP [dm3] 3L_16064633_SNP [dm6]	T	C	5.976e^-5	0.927	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sbb
X	19027377	X_19027377_SNP [dm3] X_19133344_SNP [dm6]	T	C	5.989e^-5	0.927	EXON CR45711
3R	19009079	3R_19009079_SNP [dm3] 3R_23183357_SNP [dm6]	T	C	6.019e^-5	0.927	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18812043	2L_18812043_SNP [dm3] 2L_18812043_SNP [dm6]	T	A	6.052e^-5	0.927	UPSTREAM CG10570 & 3 others INTERGENIC
3R	24299862	3R_24299862_SNP [dm3] 3R_28474140_SNP [dm6]	T	C	6.095e^-5	0.927	UTR_3_PRIME beat-VI DOWNSTREAM beat-VI
3R	23673577	3R_23673577_SNP [dm3] 3R_27847855_SNP [dm6]	C	T	6.223e^-5	0.927	DOWNSTREAM Or98a INTRON CG34353
3R	7337157	3R_7337157_SNP [dm3] 3R_11511435_SNP [dm6]	C	G	6.385e^-5	0.927	INTERGENIC
2L	9074391	2L_9074391_SNP [dm3] 2L_9074391_SNP [dm6]	C	A	6.473e^-5	0.927	INTERGENIC
2R	14930622	2R_14930622_SNP [dm3] 2R_19043117_SNP [dm6]	A	G	6.477e^-5	0.927	INTERGENIC
2L	16422200	2L_16422200_DEL [dm3] 2L_16422200_DEL [dm6]	TATATGTTTTAAATATGT...	T	6.487e^-5	0.927	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12731523	3L_12731523_SNP [dm3] 3L_12738423_SNP [dm6]	G	T	6.499e^-5	0.927	INTRON Ptp69D
3R	9216254	3R_9216254_SNP [dm3] 3R_13390532_SNP [dm6]	G	C	6.545e^-5	0.927	INTRON CCHa2
3R	25525191	3R_25525191_SNP [dm3] 3R_29699469_SNP [dm6]	C	T	6.562e^-5	0.927	INTERGENIC
3L	17286040	3L_17286040_SNP [dm3] 3L_17292940_SNP [dm6]	C	T	6.569e^-5	0.927	INTERGENIC
3R	23431266	3R_23431266_SNP [dm3] 3R_27605544_SNP [dm6]	C	T	6.623e^-5	0.927	INTRON dsd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4512754	2R_4512754_SNP [dm3] 2R_8625249_SNP [dm6]	G	A	6.701e^-5	0.927	UPSTREAM Vps25 DOWNSTREAM beta3GalTII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	22657886	3R_22657886_SNP [dm3] 3R_26832164_SNP [dm6]	C	T	6.713e^-5	0.927	INTRON Tl
2R	20216899	2R_20216899_SNP [dm3] 2R_24329376_SNP [dm6]	G	A	6.796e^-5	0.927	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3R	25549232	3R_25549232_SNP [dm3] 3R_29723510_SNP [dm6]	G	A	6.959e^-5	0.927	SYNONYMOUS_CODING Pcd DOWNSTREAM CG34296 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	18371293	3R_18371293_SNP [dm3] 3R_22545571_SNP [dm6]	A	G	6.984e^-5	0.927	INTRON AdipoR
X	12865927	X_12865927_SNP [dm3] X_12971894_SNP [dm6]	A	T	7.108e^-5	0.927	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	20788754	2L_20788754_SNP [dm3] 2L_20788754_SNP [dm6]	T	C	7.120e^-5	0.927	UTR_3_PRIME Pomp & 1 other DOWNSTREAM vari
2R	12389480	2R_12389480_SNP [dm3] 2R_16501975_SNP [dm6]	T	C	7.271e^-5	0.927	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2L	9504376	2L_9504376_SNP [dm3] 2L_9504376_SNP [dm6]	C	T	7.391e^-5	0.927	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8324561	2L_8324561_DEL [dm3] 2L_8324561_DEL [dm6]	CCC	C	7.458e^-5	0.927	INTRON CG7781
2R	16056408	2R_16056408_SNP [dm3] 2R_20168903_SNP [dm6]	C	T	7.469e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19874256	X_19874256_SNP [dm3] X_19980223_SNP [dm6]	A	G	7.490e^-5	0.927	INTERGENIC
3L	12731519	3L_12731519_SNP [dm3] 3L_12738419_SNP [dm6]	T	A	7.621e^-5	0.927	INTRON Ptp69D
2R	8581030	2R_8581030_SNP [dm3] 2R_12693525_SNP [dm6]	T	C	7.638e^-5	0.927	UPSTREAM CG8768 INTERGENIC
X	18415857	X_18415857_SNP [dm3] X_18521824_SNP [dm6]	C	T	7.650e^-5	0.927	NON_SYNONYMOUS_CODING CG6481 INTRON Bx	TF binding site mE1_TFBS_sens
2R	6374668	2R_6374668_SNP [dm3] 2R_10487163_SNP [dm6]	A	G	7.939e^-5	0.927	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11948964	3L_11948964_SNP [dm3] 3L_11955864_SNP [dm6]	C	T	8.038e^-5	0.927	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2R	19281306	2R_19281306_SNP [dm3] 2R_23393783_SNP [dm6]	A	T	8.056e^-5	0.927	INTRON CG3530	TF binding site mE1_TFBS_chinmo
3L	14397306	3L_14397306_SNP [dm3] 3L_14404206_SNP [dm6]	G	T	8.140e^-5	0.927	NON_SYNONYMOUS_CODING stwl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23003428	3R_23003428_SNP [dm3] 3R_27177706_SNP [dm6]	A	C	8.142e^-5	0.927	INTRON Ser	TF binding site mE1_TFBS_cad
3L	9271955	3L_9271955_SNP [dm3] 3L_9278855_SNP [dm6]	T	C	8.222e^-5	0.927	INTRON GluRIB
3R	19842917	3R_19842917_SNP [dm3] 3R_24017195_SNP [dm6]	C	T	8.245e^-5	0.927	INTRON KrT95D
X	12781766	X_12781766_SNP [dm3] X_12887733_SNP [dm6]	A	C	8.269e^-5	0.927	INTRON Pde9
2R	11889850	2R_11889850_SNP [dm3] 2R_16002345_SNP [dm6]	C	T	8.313e^-5	0.927	SYNONYMOUS_CODING CG8370	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22246548	3R_22246548_SNP [dm3] 3R_26420826_SNP [dm6]	G	C	8.422e^-5	0.927	INTERGENIC
2R	14281170	2R_14281170_SNP [dm3] 2R_18393665_SNP [dm6]	A	T	8.479e^-5	0.927	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	10325930	X_10325930_SNP [dm3] X_10431897_SNP [dm6]	C	T	8.529e^-5	0.927	DOWNSTREAM CG12640 INTRON CG32683
3L	17402293	3L_17402293_SNP [dm3] 3L_17409193_SNP [dm6]	G	A	8.545e^-5	0.927	INTRON blot	TF binding site mE1_TFBS_cad
2L	7843455	2L_7843455_SNP [dm3] 2L_7843455_SNP [dm6]	G	A	8.698e^-5	0.927	INTERGENIC
2R	6740115	2R_6740115_SNP [dm3] 2R_10852610_SNP [dm6]	T	G	8.708e^-5	0.927	UPSTREAM CR45136 INTRON CG30015
2L	2353577	2L_2353577_SNP [dm3] 2L_2353577_SNP [dm6]	C	A	8.803e^-5	0.927	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7995499	3L_7995499_SNP [dm3] 3L_8002399_SNP [dm6]	A	T	8.823e^-5	0.927	INTRON nmo
2R	8875722	2R_8875722_SNP [dm3] 2R_12988217_SNP [dm6]	T	G	8.859e^-5	0.927	INTERGENIC
3L	11949031	3L_11949031_SNP [dm3] 3L_11955931_SNP [dm6]	T	C	8.865e^-5	0.927	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	11949102	3L_11949102_SNP [dm3] 3L_11956002_SNP [dm6]	C	T	8.865e^-5	0.927	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3R	8731788	3R_8731788_SNP [dm3] 3R_12906066_SNP [dm6]	T	G	9.007e^-5	0.927	INTERGENIC
3R	18084228	3R_18084228_SNP [dm3] 3R_22258506_SNP [dm6]	G	A	9.113e^-5	0.927	INTRON SKIP
2L	9086201	2L_9086201_SNP [dm3] 2L_9086201_SNP [dm6]	A	T	9.279e^-5	0.927	INTRON Toll-4
2L	9379108	2L_9379108_DEL [dm3] 2L_9379108_DEL [dm6]	GG	T	9.280e^-5	0.927	INTRON Shawl
2L	6891145	2L_6891145_SNP [dm3] 2L_6891145_SNP [dm6]	A	T	9.424e^-5	0.927	INTRON Nlg2
2L	13993677	2L_13993677_SNP [dm3] 2L_13993677_SNP [dm6]	C	G	9.691e^-5	0.927	UTR_5_PRIME rk
2L	13993679	2L_13993679_INS [dm3] 2L_13993679_INS [dm6]	G	GCAAC	9.691e^-5	0.927	UTR_5_PRIME rk
2L	13993681	2L_13993681_SNP [dm3] 2L_13993681_SNP [dm6]	T	G	9.691e^-5	0.927	UTR_5_PRIME rk
2R	9686512	2R_9686512_SNP [dm3] 2R_13799007_SNP [dm6]	C	T	9.799e^-5	0.927	INTRON Cpr50Cb
2L	9074333	2L_9074333_SNP [dm3] 2L_9074333_SNP [dm6]	A	T	9.800e^-5	0.927	INTERGENIC
X	16167234	X_16167234_SNP [dm3] X_16273201_SNP [dm6]	T	C	9.826e^-5	0.927	SYNONYMOUS_CODING Mfe2 INTRON kat80	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18938971	2R_18938971_SNP [dm3] 2R_23051448_SNP [dm6]	C	G	9.887e^-5	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19317049	3R_19317049_SNP [dm3] 3R_23491327_SNP [dm6]	T	A	9.900e^-5	0.927	INTERGENIC
3L	16977192	3L_16977192_SNP [dm3] 3L_16984092_SNP [dm6]	T	A	9.958e^-5	0.927	INTRON Exn
3L	11179684	3L_11179684_SNP [dm3] 3L_11186584_SNP [dm6]	T	G	1.010e^-4	0.927	INTRON GlcAT-P
X	3211359	X_3211359_SNP [dm3] X_3317326_SNP [dm6]	G	A	1.016e^-4	0.927	UPSTREAM CG10793 INTRON dnc & 1 other
3L	10581692	3L_10581692_SNP [dm3] 3L_10588592_SNP [dm6]	T	A	1.019e^-4	0.927	INTRON A2bp1
3R	25909583	3R_25909583_INS [dm3] 3R_30083861_INS [dm6]	T	TTT	1.020e^-4	0.927	INTRON sima	TF binding site mE1_TFBS_Trl
X	12512271	X_12512271_SNP [dm3] X_12618238_SNP [dm6]	G	A	1.027e^-4	0.927	INTRON CG11085	TF binding site mE1_TFBS_inv
2L	19853244	2L_19853244_DEL [dm3] 2L_19853244_DEL [dm6]	TTTTAT	T	1.027e^-4	0.927	INTRON sick
2R	6740078	2R_6740078_SNP [dm3] 2R_10852573_SNP [dm6]	A	G	1.033e^-4	0.927	UPSTREAM CR45136 INTRON CG30015
2L	15798953	2L_15798953_SNP [dm3] 2L_15798953_SNP [dm6]	T	G	1.034e^-4	0.927	INTERGENIC
3L	18363406	3L_18363406_SNP [dm3] 3L_18370306_SNP [dm6]	T	G	1.043e^-4	0.927	INTERGENIC
X	13338159	X_13338159_INS [dm3] X_13444126_INS [dm6]	A	AG	1.046e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9084372	2R_9084372_SNP [dm3] 2R_13196867_SNP [dm6]	T	A	1.046e^-4	0.927	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	14477951	3L_14477951_SNP [dm3] 3L_14484851_SNP [dm6]	G	A	1.069e^-4	0.927	INTRON bbg
X	12136609	X_12136609_SNP [dm3] X_12242576_SNP [dm6]	A	G	1.070e^-4	0.927	INTRON Ten-a
X	21185837	X_21185837_SNP [dm3] X_21314810_SNP [dm6]	A	T	1.071e^-4	0.927	INTRON CG1801
3L	12469822	3L_12469822_SNP [dm3] 3L_12476722_SNP [dm6]	G	A	1.098e^-4	0.927	SYNONYMOUS_CODING CG10663
2R	17616842	2R_17616842_SNP [dm3] 2R_21729337_SNP [dm6]	G	A	1.104e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18631077	2R_18631077_DEL [dm3] 2R_22743572_DEL [dm6]	TT	T	1.114e^-4	0.927	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18077474	3R_18077474_INS [dm3] 3R_22251752_INS [dm6]	T	TT	1.129e^-4	0.927	INTRON SKIP
3R	25566472	3R_25566472_SNP [dm3] 3R_29740750_SNP [dm6]	C	G	1.138e^-4	0.927	SYNONYMOUS_CODING CG1969
2R	6751514	2R_6751514_SNP [dm3] 2R_10864009_SNP [dm6]	T	G	1.139e^-4	0.927	INTRON CG30015
3L	12306343	3L_12306343_SNP [dm3] 3L_12313243_SNP [dm6]	C	A	1.143e^-4	0.927	INTERGENIC
X	4647107	X_4647107_SNP [dm3] X_4753074_SNP [dm6]	A	G	1.147e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16150783	2R_16150783_SNP [dm3] 2R_20263278_SNP [dm6]	G	A	1.149e^-4	0.927	SYNONYMOUS_CODING plu UPSTREAM PCNA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	7592851	3R_7592851_INS [dm3] 3R_11767129_INS [dm6]	G	GGAA	1.158e^-4	0.927	UTR_3_PRIME l_3_neo38
2R	19920866	2R_19920866_SNP [dm3] 2R_24033343_SNP [dm6]	G	A	1.159e^-4	0.927	SYNONYMOUS_CODING Chi UPSTREAM MAN1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	15109808	2R_15109808_SNP [dm3] 2R_19222303_SNP [dm6]	C	A	1.162e^-4	0.927	INTRON hppy
3R	25036783	3R_25036783_SNP [dm3] 3R_29211061_SNP [dm6]	A	G	1.170e^-4	0.927	INTERGENIC
2R	8875316	2R_8875316_SNP [dm3] 2R_12987811_SNP [dm6]	A	T	1.176e^-4	0.927	INTERGENIC
2L	9074332	2L_9074332_SNP [dm3] 2L_9074332_SNP [dm6]	C	A	1.180e^-4	0.927	INTERGENIC
X	2515188	X_2515188_SNP [dm3] X_2621155_SNP [dm6]	G	A	1.185e^-4	0.927	SYNONYMOUS_CODING Seipin DOWNSTREAM brv3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12932345	3L_12932345_SNP [dm3] 3L_12939245_SNP [dm6]	G	A	1.185e^-4	0.927	INTERGENIC
3L	14094622	3L_14094622_SNP [dm3] 3L_14101522_SNP [dm6]	A	G	1.192e^-4	0.927	INTERGENIC
X	18197244	X_18197244_DEL [dm3] X_18303211_DEL [dm6]	GG	G	1.197e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14089529	2R_14089529_SNP [dm3] 2R_18202024_SNP [dm6]	G	A	1.220e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16493387	2L_16493387_SNP [dm3] 2L_16493387_SNP [dm6]	T	C	1.231e^-4	0.927	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	4762076	X_4762076_SNP [dm3] X_4868043_SNP [dm6]	A	T	1.236e^-4	0.927	INTRON CG42594
2L	6903387	2L_6903387_SNP [dm3] 2L_6903387_SNP [dm6]	A	G	1.236e^-4	0.927	INTRON Nlg2
2R	16189171	2R_16189171_INS [dm3] 2R_20301666_INS [dm6]	T	TTGCTGTAACTATT...	1.259e^-4	0.927	UPSTREAM CR44640 INTERGENIC
2R	17947340	2R_17947340_SNP [dm3] 2R_22059835_SNP [dm6]	G	A	1.268e^-4	0.927	NON_SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo
2R	16647958	2R_16647958_SNP [dm3] 2R_20760453_SNP [dm6]	A	T	1.269e^-4	0.927	INTERGENIC
3R	19179000	3R_19179000_SNP [dm3] 3R_23353278_SNP [dm6]	T	C	1.269e^-4	0.927	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17353837	3R_17353837_SNP [dm3] 3R_21528115_SNP [dm6]	T	A	1.278e^-4	0.927	UTR_3_PRIME CG7956 DOWNSTREAM CG7956
3L	13684084	3L_13684084_SNP [dm3] 3L_13690984_SNP [dm6]	T	C	1.278e^-4	0.927	INTRON bru-3
3L	16648748	3L_16648748_SNP [dm3] 3L_16655648_SNP [dm6]	A	T	1.279e^-4	0.927	INTRON Baldspot
2L	6189016	2L_6189016_SNP [dm3] 2L_6189016_SNP [dm6]	G	T	1.279e^-4	0.927	INTRON CG34380	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2582705	3L_2582705_SNP [dm3] 3L_2582705_SNP [dm6]	G	A	1.281e^-4	0.927	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3509718	2L_3509718_SNP [dm3] 2L_3509718_SNP [dm6]	C	T	1.287e^-4	0.927	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
3L	11586449	3L_11586449_SNP [dm3] 3L_11593349_SNP [dm6]	C	A	1.288e^-4	0.927	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
2R	12389477	2R_12389477_SNP [dm3] 2R_16501972_SNP [dm6]	G	C	1.294e^-4	0.927	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
X	3519981	X_3519981_SNP [dm3] X_3625948_SNP [dm6]	C	A	1.298e^-4	0.927	INTRON AstA-R1
2L	4179723	2L_4179723_DEL [dm3] 2L_4179723_DEL [dm6]	CCGAAAGCTGAAAAC...	C	1.298e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	18993866	X_18993866_SNP [dm3] X_19099833_SNP [dm6]	T	C	1.298e^-4	0.927	INTERGENIC
3L	3893487	3L_3893487_SNP [dm3] 3L_3893487_SNP [dm6]	T	C	1.310e^-4	0.927	UPSTREAM snRNA:U11 INTRON Fie
2L	16844843	2L_16844843_SNP [dm3] 2L_16844843_SNP [dm6]	A	G	1.318e^-4	0.927	INTRON CG13284
X	21130244	X_21130244_SNP [dm3] X_21259217_SNP [dm6]	G	A	1.332e^-4	0.927	INTRON CG32521
3L	17168689	3L_17168689_SNP [dm3] 3L_17175589_SNP [dm6]	G	C	1.337e^-4	0.927	INTRON Rbp6
2R	12089017	2R_12089017_DEL [dm3] 2R_16201512_DEL [dm6]	AA	A	1.338e^-4	0.927	SPLICE_SITE_REGION shark INTRON shark	TF binding site mE1_TFBS_chinmo
X	12136605	X_12136605_SNP [dm3] X_12242572_SNP [dm6]	G	A	1.357e^-4	0.927	INTRON Ten-a
2R	19932500	2R_19932500_SNP [dm3] 2R_24044977_SNP [dm6]	A	G	1.358e^-4	0.927	DOWNSTREAM IntS1 INTRON tsr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	6196248	X_6196248_SNP [dm3] X_6302215_SNP [dm6]	C	G	1.359e^-4	0.927	UPSTREAM CG12219 INTERGENIC
2R	15145525	2R_15145525_SNP [dm3] 2R_19258020_SNP [dm6]	G	A	1.374e^-4	0.927	DOWNSTREAM CR44432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	12866005	X_12866005_SNP [dm3] X_12971972_SNP [dm6]	C	T	1.377e^-4	0.927	SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	4344565	3L_4344565_DEL [dm3] 3L_4344565_DEL [dm6]	GTATG	G	1.379e^-4	0.927	INTRON Cip4
X	18993921	X_18993921_SNP [dm3] X_19099888_SNP [dm6]	T	A	1.384e^-4	0.927	INTERGENIC
3R	24475687	3R_24475687_SNP [dm3] 3R_28649965_SNP [dm6]	G	A	1.390e^-4	0.927	UTR_3_PRIME CG31050 DOWNSTREAM CG31050
2R	9686919	2R_9686919_SNP [dm3] 2R_13799414_SNP [dm6]	G	T	1.390e^-4	0.927	INTRON Cpr50Cb
3R	5426591	3R_5426591_SNP [dm3] 3R_9600869_SNP [dm6]	T	A	1.391e^-4	0.927	INTRON CG8312
2R	9354474	2R_9354474_SNP [dm3] 2R_13466969_SNP [dm6]	A	T	1.399e^-4	0.927	INTRON arr
2R	6509693	2R_6509693_SNP [dm3] 2R_10622188_SNP [dm6]	G	T	1.401e^-4	0.927	UPSTREAM CG11883 INTRON CG11883
X	11164336	X_11164336_SNP [dm3] X_11270303_SNP [dm6]	A	G	1.402e^-4	0.927	INTRON CG44422
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	1.405e^-4	0.927	INTRON slou
2L	5404925	2L_5404925_SNP [dm3] 2L_5404925_SNP [dm6]	C	A	1.408e^-4	0.927	NON_SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	1654651	2L_1654651_SNP [dm3] 2L_1654651_SNP [dm6]	C	A	1.410e^-4	0.927	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2L	3176405	2L_3176405_SNP [dm3] 2L_3176405_SNP [dm6]	G	T	1.414e^-4	0.927	INTRON CG34393
X	19690178	X_19690178_SNP [dm3] X_19796145_SNP [dm6]	T	A	1.416e^-4	0.927	INTERGENIC
3L	14343502	3L_14343502_SNP [dm3] 3L_14350402_SNP [dm6]	A	G	1.420e^-4	0.927	INTRON fz
3L	14395920	3L_14395920_SNP [dm3] 3L_14402820_SNP [dm6]	T	A	1.427e^-4	0.927	UPSTREAM CG3868 DOWNSTREAM stwl INTERGENIC
X	18993426	X_18993426_SNP [dm3] X_19099393_SNP [dm6]	G	C	1.433e^-4	0.927	INTERGENIC
X	16425477	X_16425477_SNP [dm3] X_16531444_SNP [dm6]	G	A	1.433e^-4	0.927	INTRON para	TF binding site BDTNP1_TFBS_dl
3L	9364233	3L_9364233_SNP [dm3] 3L_9371133_SNP [dm6]	G	A	1.448e^-4	0.927	UPSTREAM Fdxh DOWNSTREAM CG4452 & 1 other INTRON Fdxh
2L	1712028	2L_1712028_SNP [dm3] 2L_1712028_SNP [dm6]	A	T	1.460e^-4	0.927	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10995643	2L_10995643_INS [dm3] 2L_10995643_INS [dm6]	A	AA	1.463e^-4	0.927	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2R	8875364	2R_8875364_INS [dm3] 2R_12987859_INS [dm6]	T	AAGTTTACAGA...	1.466e^-4	0.927	INTERGENIC
2R	10268766	2R_10268766_SNP [dm3] 2R_14381261_SNP [dm6]	C	T	1.470e^-4	0.927	INTRON Dh44-R1
2L	14710902	2L_14710902_SNP [dm3] 2L_14710902_SNP [dm6]	A	T	1.495e^-4	0.927	INTERGENIC
2L	10873586	2L_10873586_SNP [dm3] 2L_10873586_SNP [dm6]	T	C	1.498e^-4	0.927	INTERGENIC
2R	16146219	2R_16146219_SNP [dm3] 2R_20258714_SNP [dm6]	T	G	1.502e^-4	0.927	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16226436	X_16226436_SNP [dm3] X_16332403_SNP [dm6]	A	C	1.512e^-4	0.927	UPSTREAM CG9921 INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17401956	3L_17401956_SNP [dm3] 3L_17408856_SNP [dm6]	A	C	1.512e^-4	0.927	INTRON blot
2L	16844913	2L_16844913_SNP [dm3] 2L_16844913_SNP [dm6]	C	T	1.514e^-4	0.927	INTRON CG13284
3L	4000944	3L_4000944_SNP [dm3] 3L_4000944_SNP [dm6]	T	A	1.519e^-4	0.927	INTERGENIC
X	17303938	X_17303938_SNP [dm3] X_17409905_SNP [dm6]	T	C	1.531e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16422189	2L_16422189_SNP [dm3] 2L_16422189_SNP [dm6]	T	C	1.536e^-4	0.927	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	11268348	X_11268348_DEL [dm3] X_11374315_DEL [dm6]	GC	G	1.538e^-4	0.927	UTR_5_PRIME dlg1
3L	14493810	3L_14493810_SNP [dm3] 3L_14500710_SNP [dm6]	C	A	1.538e^-4	0.927	INTRON bbg
3L	22435648	3L_22435648_SNP [dm3] 3L_22442548_SNP [dm6]	A	C	1.551e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17616847	2R_17616847_SNP [dm3] 2R_21729342_SNP [dm6]	A	C	1.553e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad
X	12781737	X_12781737_SNP [dm3] X_12887704_SNP [dm6]	A	T	1.554e^-4	0.927	INTRON Pde9
3L	18808705	3L_18808705_SNP [dm3] 3L_18815605_SNP [dm6]	T	A	1.555e^-4	0.927	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18196194	X_18196194_SNP [dm3] X_18302161_SNP [dm6]	C	T	1.557e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5726169	2L_5726169_SNP [dm3] 2L_5726169_SNP [dm6]	G	T	1.563e^-4	0.927	DOWNSTREAM CG14006 INTRON CG11030
3R	18839793	3R_18839793_SNP [dm3] 3R_23014071_SNP [dm6]	C	A	1.570e^-4	0.927	INTRON CG6688	TF binding site mE1_TFBS_chinmo
3L	12356671	3L_12356671_SNP [dm3] 3L_12363571_SNP [dm6]	C	T	1.571e^-4	0.927	INTERGENIC
3L	13684114	3L_13684114_SNP [dm3] 3L_13691014_SNP [dm6]	G	C	1.581e^-4	0.927	INTRON bru-3
3L	17605709	3L_17605709_SNP [dm3] 3L_17612609_SNP [dm6]	A	C	1.582e^-4	0.927	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	24968968	3R_24968968_SNP [dm3] 3R_29143246_SNP [dm6]	C	T	1.583e^-4	0.927	SYNONYMOUS_CODING CG14516	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14830449	2R_14830449_SNP [dm3] 2R_18942944_SNP [dm6]	A	G	1.589e^-4	0.927	INTRON sano
3R	5120751	3R_5120751_SNP [dm3] 3R_9295029_SNP [dm6]	G	A	1.590e^-4	0.927	UTR_3_PRIME CG8861
X	18833856	X_18833856_SNP [dm3] X_18939823_SNP [dm6]	G	A	1.590e^-4	0.927	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	4489205	2L_4489205_SNP [dm3] 2L_4489205_SNP [dm6]	C	A	1.591e^-4	0.927	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	19688456	3R_19688456_DEL [dm3] 3R_23862734_DEL [dm6]	CAAGTGTAAC	C	1.599e^-4	0.927	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13993678	2L_13993678_SNP [dm3] 2L_13993678_SNP [dm6]	A	T	1.602e^-4	0.927	UTR_5_PRIME rk
3R	17174295	3R_17174295_SNP [dm3] 3R_21348573_SNP [dm6]	C	T	1.609e^-4	0.927	UTR_5_PRIME CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17082366	2R_17082366_SNP [dm3] 2R_21194861_SNP [dm6]	A	G	1.617e^-4	0.927	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13725229	3R_13725229_SNP [dm3] 3R_17899507_SNP [dm6]	A	G	1.621e^-4	0.927	INTRON Rim
2R	10031091	2R_10031091_SNP [dm3] 2R_14143586_SNP [dm6]	G	T	1.626e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_bab1
X	3211106	X_3211106_INS [dm3] X_3317073_INS [dm6]	A	AAA	1.638e^-4	0.927	UPSTREAM CG10793 INTRON dnc & 1 other
3R	24487394	3R_24487394_SNP [dm3] 3R_28661672_SNP [dm6]	G	A	1.646e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4327638	2L_4327638_SNP [dm3] 2L_4327638_SNP [dm6]	A	G	1.649e^-4	0.927	INTRON CG16857
3R	18839797	3R_18839797_SNP [dm3] 3R_23014075_SNP [dm6]	A	C	1.669e^-4	0.927	INTRON CG6688	TF binding site mE1_TFBS_chinmo
X	18196480	X_18196480_SNP [dm3] X_18302447_SNP [dm6]	G	C	1.672e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18921818	X_18921818_DEL [dm3] X_19027785_DEL [dm6]	AA	A	1.673e^-4	0.927	UTR_3_PRIME CG43759 DOWNSTREAM CG43759
2R	9086179	2R_9086179_SNP [dm3] 2R_13198674_SNP [dm6]	A	C	1.674e^-4	0.927	UPSTREAM Aats-val & 1 other INTERGENIC
2R	8588070	2R_8588070_SNP [dm3] 2R_12700565_SNP [dm6]	A	G	1.674e^-4	0.927	SPLICE_SITE_REGION wuc INTRON wuc
2L	18414286	2L_18414286_SNP [dm3] 2L_18414286_SNP [dm6]	G	A	1.674e^-4	0.927	INTERGENIC
X	9509812	X_9509812_SNP [dm3] X_9615779_SNP [dm6]	A	G	1.688e^-4	0.927	UPSTREAM CG42797 INTRON CG42797
3L	14493836	3L_14493836_SNP [dm3] 3L_14500736_SNP [dm6]	C	A	1.696e^-4	0.927	INTRON bbg
2R	6861820	2R_6861820_SNP [dm3] 2R_10974315_SNP [dm6]	T	A	1.706e^-4	0.927	INTERGENIC
3L	14477928	3L_14477928_SNP [dm3] 3L_14484828_SNP [dm6]	G	A	1.707e^-4	0.927	INTRON bbg
3R	8731808	3R_8731808_SNP [dm3] 3R_12906086_SNP [dm6]	G	A	1.709e^-4	0.927	INTERGENIC
2R	19281256	2R_19281256_SNP [dm3] 2R_23393733_SNP [dm6]	A	G	1.724e^-4	0.927	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2R	9351053	2R_9351053_SNP [dm3] 2R_13463548_SNP [dm6]	G	C	1.733e^-4	0.927	INTRON arr
3L	15802498	3L_15802498_DEL [dm3] 3L_15809398_DEL [dm6]	AGA	A	1.734e^-4	0.927	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2R	16095734	2R_16095734_SNP [dm3] 2R_20208229_SNP [dm6]	A	G	1.742e^-4	0.927	INTERGENIC
X	15532353	X_15532353_SNP [dm3] X_15638320_SNP [dm6]	T	G	1.757e^-4	0.927	INTERGENIC
3L	14493829	3L_14493829_SNP [dm3] 3L_14500729_SNP [dm6]	C	A	1.770e^-4	0.927	INTRON bbg
3L	22376237	3L_22376237_SNP [dm3] 3L_22383137_SNP [dm6]	T	A	1.775e^-4	0.927	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9089118	3L_9089118_SNP [dm3] 3L_9096018_SNP [dm6]	G	A	1.778e^-4	0.927	UPSTREAM CG13315 INTERGENIC
2R	14830420	2R_14830420_SNP [dm3] 2R_18942915_SNP [dm6]	G	A	1.780e^-4	0.927	INTRON sano
2L	1654718	2L_1654718_SNP [dm3] 2L_1654718_SNP [dm6]	A	T	1.782e^-4	0.927	INTRON chinmo
3R	13716523	3R_13716523_SNP [dm3] 3R_17890801_SNP [dm6]	T	G	1.785e^-4	0.927	SPLICE_SITE_REGION Rim INTRON Rim
2L	10873638	2L_10873638_SNP [dm3] 2L_10873638_SNP [dm6]	G	A	1.789e^-4	0.927	INTERGENIC
2R	8875661	2R_8875661_SNP [dm3] 2R_12988156_SNP [dm6]	C	T	1.794e^-4	0.927	INTERGENIC
3R	16397468	3R_16397468_SNP [dm3] 3R_20571746_SNP [dm6]	G	A	1.797e^-4	0.927	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3241643	X_3241643_DEL [dm3] X_3347610_DEL [dm6]	AA	A	1.802e^-4	0.927	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18839832	3R_18839832_SNP [dm3] 3R_23014110_SNP [dm6]	T	C	1.810e^-4	0.927	INTRON CG6688	TF binding site mE1_TFBS_chinmo
2R	14930618	2R_14930618_SNP [dm3] 2R_19043113_SNP [dm6]	A	C	1.812e^-4	0.927	INTERGENIC
3R	18059093	3R_18059093_DEL [dm3] 3R_22233371_DEL [dm6]	GCCGCCCAAACGG...	G	1.823e^-4	0.927	INTRON SKIP
3R	18059108	3R_18059108_SNP [dm3] 3R_22233386_SNP [dm6]	T	A	1.823e^-4	0.927	INTRON SKIP
3R	17353802	3R_17353802_SNP [dm3] 3R_21528080_SNP [dm6]	G	T	1.845e^-4	0.927	UTR_3_PRIME CG7956 DOWNSTREAM CG7956
2L	18859475	2L_18859475_DEL [dm3] 2L_18859475_DEL [dm6]	TTCT	T	1.846e^-4	0.927	UPSTREAM mRpL13 & 1 other DOWNSTREAM tup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	17155884	2R_17155884_SNP [dm3] 2R_21268379_SNP [dm6]	G	A	1.847e^-4	0.927	UPSTREAM CG30393 INTRON Rgk3
X	16584883	X_16584883_SNP [dm3] X_16690850_SNP [dm6]	C	T	1.847e^-4	0.927	INTRON Sep4
X	8988360	X_8988360_SNP [dm3] X_9094327_SNP [dm6]	A	G	1.854e^-4	0.927	SYNONYMOUS_CODING CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	14137401	X_14137401_SNP [dm3] X_14243368_SNP [dm6]	T	C	1.863e^-4	0.927	UPSTREAM CG32599 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3875473	3L_3875473_SNP [dm3] 3L_3875473_SNP [dm6]	C	G	1.877e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_sens
2R	10892958	2R_10892958_SNP [dm3] 2R_15005453_SNP [dm6]	G	T	1.884e^-4	0.927	INTERGENIC
2L	4489182	2L_4489182_SNP [dm3] 2L_4489182_SNP [dm6]	G	A	1.890e^-4	0.927	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	14379639	2L_14379639_SNP [dm3] 2L_14379639_SNP [dm6]	C	T	1.896e^-4	0.927	INTRON ppk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17631303	3L_17631303_SNP [dm3] 3L_17638203_SNP [dm6]	T	G	1.900e^-4	0.927	UTR_3_PRIME Pep DOWNSTREAM CG7497	TF binding site mE1_TFBS_cad
3R	25058740	3R_25058740_SNP [dm3] 3R_29233018_SNP [dm6]	A	G	1.900e^-4	0.927	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9938036	2L_9938036_SNP [dm3] 2L_9938036_SNP [dm6]	C	T	1.900e^-4	0.927	UTR_5_PRIME CG31712 UPSTREAM CG4619 DOWNSTREAM Apf EXON CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	16422184	2L_16422184_SNP [dm3] 2L_16422184_SNP [dm6]	G	T	1.903e^-4	0.927	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	15636669	X_15636669_SNP [dm3] X_15742636_SNP [dm6]	A	T	1.917e^-4	0.927	UTR_3_PRIME CG8944
2R	9310791	2R_9310791_SNP [dm3] 2R_13423286_SNP [dm6]	A	C	1.919e^-4	0.927	SYNONYMOUS_CODING CG30060 INTRON CG42321
3R	19898715	3R_19898715_SNP [dm3] 3R_24072993_SNP [dm6]	C	G	1.922e^-4	0.927	INTRON 4EHP
2R	8875723	2R_8875723_SNP [dm3] 2R_12988218_SNP [dm6]	G	T	1.927e^-4	0.927	INTERGENIC
2L	2737728	2L_2737728_SNP [dm3] 2L_2737728_SNP [dm6]	T	G	1.933e^-4	0.927	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914
2R	19888468	2R_19888468_SNP [dm3] 2R_24000945_SNP [dm6]	A	G	1.935e^-4	0.927	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6439453	2R_6439453_SNP [dm3] 2R_10551948_SNP [dm6]	C	G	1.936e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2159287	3L_2159287_SNP [dm3] 3L_2159287_SNP [dm6]	T	C	1.944e^-4	0.927	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20075329	3L_20075329_SNP [dm3] 3L_20082229_SNP [dm6]	T	C	1.950e^-4	0.927	INTRON sNPF-R
2R	18558194	2R_18558194_DEL [dm3] 2R_22670689_DEL [dm6]	GC	G	1.955e^-4	0.927	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	11162523	X_11162523_INS [dm3] X_11268490_INS [dm6]	T	TAT	1.956e^-4	0.927	INTRON CG44422
2L	9346030	2L_9346030_SNP [dm3] 2L_9346030_SNP [dm6]	T	A	1.956e^-4	0.927	INTERGENIC
3R	18086363	3R_18086363_SNP [dm3] 3R_22260641_SNP [dm6]	C	A	1.959e^-4	0.927	INTRON SKIP
2R	6751500	2R_6751500_SNP [dm3] 2R_10863995_SNP [dm6]	A	T	1.966e^-4	0.927	INTRON CG30015
3L	10167634	3L_10167634_SNP [dm3] 3L_10174534_SNP [dm6]	G	A	1.969e^-4	0.927	INTRON dpr10
2L	10008023	2L_10008023_SNP [dm3] 2L_10008023_SNP [dm6]	T	A	1.970e^-4	0.927	UTR_3_PRIME CG4747 DOWNSTREAM CG4747	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17296797	3R_17296797_SNP [dm3] 3R_21471075_SNP [dm6]	G	A	1.983e^-4	0.927	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8438786	2R_8438786_SNP [dm3] 2R_12551281_SNP [dm6]	T	G	1.995e^-4	0.927	INTRON fra
2L	16598494	2L_16598494_SNP [dm3] 2L_16598494_SNP [dm6]	G	A	1.998e^-4	0.927	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14628532	2L_14628532_SNP [dm3] 2L_14628532_SNP [dm6]	A	T	2.001e^-4	0.927	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3056870	2L_3056870_SNP [dm3] 2L_3056870_SNP [dm6]	C	T	2.011e^-4	0.927	UTR_5_PRIME CG3523 UPSTREAM CG3523 DOWNSTREAM v_2_k05816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9504373	2L_9504373_SNP [dm3] 2L_9504373_SNP [dm6]	A	G	2.021e^-4	0.927	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18387355	3L_18387355_SNP [dm3] 3L_18394255_SNP [dm6]	A	G	2.023e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9264378	2L_9264378_SNP [dm3] 2L_9264378_SNP [dm6]	A	T	2.033e^-4	0.927	INTRON Ggamma30A
X	18833967	X_18833967_SNP [dm3] X_18939934_SNP [dm6]	T	A	2.034e^-4	0.927	INTRON CG43759	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	14788332	2R_14788332_SNP [dm3] 2R_18900827_SNP [dm6]	T	A	2.034e^-4	0.927	INTRON sano
3L	14950695	3L_14950695_SNP [dm3] 3L_14957595_SNP [dm6]	A	C	2.037e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	7074669	2L_7074669_DEL [dm3] 2L_7074669_DEL [dm6]	CGTGGCGGCC	AA	2.042e^-4	0.927	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15011325	3L_15011325_SNP [dm3] 3L_15018225_SNP [dm6]	T	C	2.053e^-4	0.927	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3356503	2L_3356503_SNP [dm3] 2L_3356503_SNP [dm6]	A	C	2.055e^-4	0.927	INTERGENIC
X	3368299	X_3368299_MNP [dm3] X_3474266_MNP [dm6]	TCG	ATT	2.059e^-4	0.927	UTR_5_PRIME CG12206 UPSTREAM CG12206 INTRON CR44999 & 1 other
2R	6861814	2R_6861814_SNP [dm3] 2R_10974309_SNP [dm6]	G	A	2.062e^-4	0.927	INTERGENIC
X	12781751	X_12781751_SNP [dm3] X_12887718_SNP [dm6]	T	G	2.063e^-4	0.927	INTRON Pde9
2R	8803768	2R_8803768_SNP [dm3] 2R_12916263_SNP [dm6]	G	C	2.063e^-4	0.927	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	11821301	X_11821301_SNP [dm3] X_11927268_SNP [dm6]	C	A	2.072e^-4	0.927	INTRON CG10362
2R	13808578	2R_13808578_SNP [dm3] 2R_17921073_SNP [dm6]	C	T	2.087e^-4	0.927	INTRON Elk
2R	7132894	2R_7132894_SNP [dm3] 2R_11245389_SNP [dm6]	A	G	2.096e^-4	0.927	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
2R	8875744	2R_8875744_SNP [dm3] 2R_12988239_SNP [dm6]	C	T	2.101e^-4	0.927	INTERGENIC
3L	8251379	3L_8251379_SNP [dm3] 3L_8258279_SNP [dm6]	T	A	2.111e^-4	0.927	INTRON Dscam4
2R	19283347	2R_19283347_SNP [dm3] 2R_23395824_SNP [dm6]	A	C	2.115e^-4	0.927	UPSTREAM CG3530 DOWNSTREAM CG3520 INTRON CG3530	TF binding site mE1_TFBS_Trl
2L	8346154	2L_8346154_SNP [dm3] 2L_8346154_SNP [dm6]	C	T	2.123e^-4	0.927	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19126534	2R_19126534_DEL [dm3] 2R_23239011_DEL [dm6]	GAAAATCGCG	G	2.127e^-4	0.927	INTERGENIC
3R	24388612	3R_24388612_SNP [dm3] 3R_28562890_SNP [dm6]	G	A	2.131e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9085854	2L_9085854_SNP [dm3] 2L_9085854_SNP [dm6]	T	A	2.140e^-4	0.927	INTRON Toll-4
2R	14090594	2R_14090594_SNP [dm3] 2R_18203089_SNP [dm6]	G	C	2.144e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9089198	3L_9089198_DEL [dm3] 3L_9096098_DEL [dm6]	ATA	T	2.150e^-4	0.927	UPSTREAM CG13315 INTERGENIC
3L	10621765	3L_10621765_SNP [dm3] 3L_10628665_SNP [dm6]	A	G	2.153e^-4	0.927	UPSTREAM CG14151 DOWNSTREAM CG42536 INTERGENIC	TF binding site mE1_TFBS_inv
X	18193385	X_18193385_SNP [dm3] X_18299352_SNP [dm6]	A	G	2.159e^-4	0.927	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19316987	3R_19316987_SNP [dm3] 3R_23491265_SNP [dm6]	C	A	2.159e^-4	0.927	INTERGENIC
X	15358761	X_15358761_SNP [dm3] X_15464728_SNP [dm6]	G	A	2.163e^-4	0.927	UTR_5_PRIME CG6299 UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3R	9759805	3R_9759805_SNP [dm3] 3R_13934083_SNP [dm6]	C	T	2.165e^-4	0.927	INTERGENIC
X	10326282	X_10326282_INS [dm3] X_10432249_INS [dm6]	A	AT	2.170e^-4	0.927	DOWNSTREAM CG12640 INTRON CG32683
3L	9089247	3L_9089247_SNP [dm3] 3L_9096147_SNP [dm6]	A	C	2.176e^-4	0.927	UPSTREAM CG13315 INTERGENIC
2L	9819407	2L_9819407_SNP [dm3] 2L_9819407_SNP [dm6]	A	G	2.184e^-4	0.927	INTRON nAChRalpha6
2R	8123769	2R_8123769_SNP [dm3] 2R_12236264_SNP [dm6]	T	A	2.189e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	14161502	2R_14161502_SNP [dm3] 2R_18273997_SNP [dm6]	C	T	2.190e^-4	0.927	INTERGENIC
2R	8846872	2R_8846872_SNP [dm3] 2R_12959367_SNP [dm6]	A	T	2.191e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	22232355	3R_22232355_SNP [dm3] 3R_26406633_SNP [dm6]	T	C	2.193e^-4	0.927	INTERGENIC
2R	18568167	2R_18568167_SNP [dm3] 2R_22680662_SNP [dm6]	A	T	2.204e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	18916933	X_18916933_SNP [dm3] X_19022900_SNP [dm6]	T	C	2.211e^-4	0.927	INTRON CG43759
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	2.213e^-4	0.927	INTERGENIC
2R	6751515	2R_6751515_SNP [dm3] 2R_10864010_SNP [dm6]	C	G	2.226e^-4	0.927	INTRON CG30015
2L	21148929	2L_21148929_SNP [dm3] 2L_21148929_SNP [dm6]	A	C	2.226e^-4	0.927	UPSTREAM del INTERGENIC
2R	8475829	2R_8475829_SNP [dm3] 2R_12588324_SNP [dm6]	C	G	2.231e^-4	0.927	UPSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14930617	2R_14930617_SNP [dm3] 2R_19043112_SNP [dm6]	A	T	2.232e^-4	0.927	INTERGENIC
3L	2349758	3L_2349758_SNP [dm3] 3L_2349758_SNP [dm6]	G	A	2.235e^-4	0.927	INTERGENIC
3R	24388631	3R_24388631_SNP [dm3] 3R_28562909_SNP [dm6]	T	C	2.236e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12547425	3L_12547425_SNP [dm3] 3L_12554325_SNP [dm6]	C	A	2.242e^-4	0.927	INTRON sowah
2L	14416615	2L_14416615_INS [dm3] 2L_14416615_INS [dm6]	T	TTTAAGTATAAT...	2.244e^-4	0.927	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3785615	X_3785615_DEL [dm3] X_3891582_DEL [dm6]	AA	A	2.257e^-4	0.927	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
2R	14402619	2R_14402619_SNP [dm3] 2R_18515114_SNP [dm6]	A	T	2.259e^-4	0.927	INTRON CG43066	TF binding site mE1_TFBS_Trl
3R	7592426	3R_7592426_SNP [dm3] 3R_11766704_SNP [dm6]	G	T	2.263e^-4	0.927	UTR_3_PRIME l_3_neo38
2R	8533527	2R_8533527_SNP [dm3] 2R_12646022_SNP [dm6]	A	T	2.264e^-4	0.927	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
3R	16521629	3R_16521629_INS [dm3] 3R_20695907_INS [dm6]	A	ACATA	2.265e^-4	0.927	INTRON Oamb
3L	14621701	3L_14621701_DEL [dm3] 3L_14628601_DEL [dm6]	TGG	T	2.271e^-4	0.927	FRAME_SHIFT RecQ5 UTR_3_PRIME RecQ5 DOWNSTREAM CG9628	TF binding site mE1_TFBS_sens
X	683368	X_683368_SNP [dm3] X_789335_SNP [dm6]	G	A	2.278e^-4	0.927	DOWNSTREAM CR44469 INTRON CG13360
2L	16451159	2L_16451159_DEL [dm3] 2L_16451159_DEL [dm6]	AGCA	A	2.279e^-4	0.927	UTR_5_PRIME Idgf3 DOWNSTREAM Idgf2 INTRON Idgf3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24854390	3R_24854390_SNP [dm3] 3R_29028668_SNP [dm6]	A	G	2.294e^-4	0.927	SYNONYMOUS_CODING CG1951	TF binding site mE1_TFBS_HSA
3R	14663621	3R_14663621_SNP [dm3] 3R_18837899_SNP [dm6]	A	G	2.296e^-4	0.927	INTRON CG18208
X	12136650	X_12136650_INS [dm3] X_12242617_INS [dm6]	C	CAAGTTCAAGTT...	2.301e^-4	0.927	INTRON Ten-a
X	6292669	X_6292669_SNP [dm3] X_6398636_SNP [dm6]	A	G	2.306e^-4	0.927	DOWNSTREAM CG33669 INTERGENIC
3L	16234795	3L_16234795_SNP [dm3] 3L_16241695_SNP [dm6]	C	A	2.307e^-4	0.927	INTERGENIC
3L	22439138	3L_22439138_SNP [dm3] 3L_22446038_SNP [dm6]	G	A	2.311e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8325610	2L_8325610_SNP [dm3] 2L_8325610_SNP [dm6]	A	T	2.329e^-4	0.927	UPSTREAM CG7781 INTERGENIC
2L	14197188	2L_14197188_DEL [dm3] 2L_14197188_DEL [dm6]	TGTT	T	2.332e^-4	0.927	CODON_DELETION Dyrk2
3L	7998753	3L_7998753_SNP [dm3] 3L_8005653_SNP [dm6]	A	T	2.335e^-4	0.927	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9443736	3R_9443736_SNP [dm3] 3R_13618014_SNP [dm6]	A	T	2.340e^-4	0.927	EXON CR45680
2R	9552172	2R_9552172_SNP [dm3] 2R_13664667_SNP [dm6]	C	T	2.342e^-4	0.927	UPSTREAM CG13337 INTRON fas	TF binding site mE1_TFBS_HSA
X	16425817	X_16425817_SNP [dm3] X_16531784_SNP [dm6]	G	T	2.343e^-4	0.927	INTRON para	TF binding site BDTNP1_TFBS_dl
2L	7051473	2L_7051473_SNP [dm3] 2L_7051473_SNP [dm6]	G	A	2.343e^-4	0.927	SYNONYMOUS_CODING milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9089334	3L_9089334_DEL [dm3] 3L_9096234_DEL [dm6]	AGAA	A	2.349e^-4	0.927	UPSTREAM CG13315 INTERGENIC
3L	9717397	3L_9717397_SNP [dm3] 3L_9724297_SNP [dm6]	C	T	2.352e^-4	0.927	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19620001	3R_19620001_SNP [dm3] 3R_23794279_SNP [dm6]	C	T	2.373e^-4	0.927	INTRON mbc
2L	3942276	2L_3942276_SNP [dm3] 2L_3942276_SNP [dm6]	T	A	2.383e^-4	0.927	INTRON fred
3L	10231256	3L_10231256_SNP [dm3] 3L_10238156_SNP [dm6]	A	G	2.383e^-4	0.927	INTERGENIC
3L	2950644	3L_2950644_SNP [dm3] 3L_2950644_SNP [dm6]	A	G	2.385e^-4	0.927	SYNONYMOUS_CODING CG32846 INTRON Shab
2L	16844907	2L_16844907_SNP [dm3] 2L_16844907_SNP [dm6]	T	G	2.392e^-4	0.927	INTRON CG13284
3L	12933469	3L_12933469_SNP [dm3] 3L_12940369_SNP [dm6]	G	C	2.394e^-4	0.927	INTERGENIC
3L	8707511	3L_8707511_SNP [dm3] 3L_8714411_SNP [dm6]	A	C	2.400e^-4	0.927	INTERGENIC	regulatory region REDfly_CRMs
3R	25909499	3R_25909499_DEL [dm3] 3R_30083777_DEL [dm6]	ATGTGAACCA	A	2.404e^-4	0.927	INTRON sima
2L	8302108	2L_8302108_SNP [dm3] 2L_8302108_SNP [dm6]	G	T	2.412e^-4	0.927	SYNONYMOUS_CODING wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	20313081	3R_20313081_SNP [dm3] 3R_24487359_SNP [dm6]	A	G	2.414e^-4	0.927	INTRON nAChRalpha2
X	2404213	X_2404213_SNP [dm3] X_2510180_SNP [dm6]	G	T	2.415e^-4	0.927	INTRON trol
3L	7927801	3L_7927801_DEL [dm3] 3L_7934701_DEL [dm6]	GAATTTCTATAG...	G	2.421e^-4	0.927	UPSTREAM syd INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23003416	3R_23003416_DEL [dm3] 3R_27177694_DEL [dm6]	ATA	A	2.424e^-4	0.927	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003431	3R_23003431_SNP [dm3] 3R_27177709_SNP [dm6]	T	G	2.424e^-4	0.927	INTRON Ser	TF binding site mE1_TFBS_cad
3R	13638027	3R_13638027_DEL [dm3] 3R_17812305_DEL [dm6]	AA	A	2.434e^-4	0.927	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	14404575	3L_14404575_SNP [dm3] 3L_14411475_SNP [dm6]	T	A	2.436e^-4	0.927	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14872391	2L_14872391_SNP [dm3] 2L_14872391_SNP [dm6]	C	T	2.453e^-4	0.927	UPSTREAM CG4480 INTERGENIC
3L	2567011	3L_2567011_SNP [dm3] 3L_2567011_SNP [dm6]	A	T	2.454e^-4	0.927	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5601398	X_5601398_SNP [dm3] X_5707365_SNP [dm6]	C	T	2.466e^-4	0.927	SPLICE_SITE_REGION CG4096 INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12003974	3L_12003974_SNP [dm3] 3L_12010874_SNP [dm6]	C	T	2.466e^-4	0.927	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24299763	3R_24299763_SNP [dm3] 3R_28474041_SNP [dm6]	G	T	2.476e^-4	0.927	UTR_3_PRIME beat-VI DOWNSTREAM beat-VI
3L	14477926	3L_14477926_SNP [dm3] 3L_14484826_SNP [dm6]	G	A	2.483e^-4	0.927	INTRON bbg
3L	9089405	3L_9089405_SNP [dm3] 3L_9096305_SNP [dm6]	T	C	2.490e^-4	0.927	UPSTREAM CG13315 INTERGENIC
3R	19009116	3R_19009116_SNP [dm3] 3R_23183394_SNP [dm6]	A	T	2.495e^-4	0.927	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11586450	3L_11586450_SNP [dm3] 3L_11593350_SNP [dm6]	C	A	2.495e^-4	0.927	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
X	7882441	X_7882441_SNP [dm3] X_7988408_SNP [dm6]	A	G	2.496e^-4	0.927	INTERGENIC
2L	4300475	2L_4300475_SNP [dm3] 2L_4300475_SNP [dm6]	T	G	2.497e^-4	0.927	INTRON tutl
2L	8302024	2L_8302024_SNP [dm3] 2L_8302024_SNP [dm6]	A	G	2.503e^-4	0.927	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3L	12933602	3L_12933602_SNP [dm3] 3L_12940502_SNP [dm6]	A	C	2.507e^-4	0.927	INTERGENIC
2L	16406104	2L_16406104_SNP [dm3] 2L_16406104_SNP [dm6]	C	T	2.507e^-4	0.927	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18784638	2L_18784638_SNP [dm3] 2L_18784638_SNP [dm6]	A	C	2.510e^-4	0.927	INTRON ham	TF binding site BDTNP1_TFBS_dl
2L	17948829	2L_17948829_SNP [dm3] 2L_17948829_SNP [dm6]	A	T	2.519e^-4	0.927	EXON CR44398
2R	5231109	2R_5231109_SNP [dm3] 2R_9343604_SNP [dm6]	A	T	2.524e^-4	0.927	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_inv
3R	9440995	3R_9440995_SNP [dm3] 3R_13615273_SNP [dm6]	A	C	2.531e^-4	0.927	UPSTREAM CG9269 INTERGENIC
X	12136646	X_12136646_MNP [dm3] X_12242613_MNP [dm6]	TGGC	ATTT	2.532e^-4	0.927	INTRON Ten-a
X	18207088	X_18207088_SNP [dm3] X_18313055_SNP [dm6]	T	C	2.539e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17279229	X_17279229_SNP [dm3] X_17385196_SNP [dm6]	A	C	2.547e^-4	0.927	INTERGENIC
3R	22232497	3R_22232497_SNP [dm3] 3R_26406775_SNP [dm6]	T	C	2.549e^-4	0.927	INTERGENIC
2L	20631117	2L_20631117_SNP [dm3] 2L_20631117_SNP [dm6]	C	T	2.549e^-4	0.927	INTERGENIC
3R	25550415	3R_25550415_SNP [dm3] 3R_29724693_SNP [dm6]	T	C	2.551e^-4	0.927	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	19615267	X_19615267_SNP [dm3] X_19721234_SNP [dm6]	T	A	2.583e^-4	0.927	INTRON CG12531
2R	6167232	2R_6167232_SNP [dm3] 2R_10279727_SNP [dm6]	G	C	2.585e^-4	0.927	NON_SYNONYMOUS_CODING CAP INTRON CAP
2R	6861815	2R_6861815_SNP [dm3] 2R_10974310_SNP [dm6]	A	C	2.592e^-4	0.927	INTERGENIC
3R	18909418	3R_18909418_SNP [dm3] 3R_23083696_SNP [dm6]	T	C	2.592e^-4	0.927	INTRON CG13830	TF binding site mE1_TFBS_chinmo
X	2325264	X_2325264_SNP [dm3] X_2431231_SNP [dm6]	T	C	2.594e^-4	0.927	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15008984	3R_15008984_SNP [dm3] 3R_19183262_SNP [dm6]	G	T	2.595e^-4	0.927	INTRON CG31475
2L	7169583	2L_7169583_SNP [dm3] 2L_7169583_SNP [dm6]	G	T	2.596e^-4	0.927	INTERGENIC
2R	8876024	2R_8876024_SNP [dm3] 2R_12988519_SNP [dm6]	A	T	2.599e^-4	0.927	INTERGENIC
3R	2352909	3R_2352909_SNP [dm3] 3R_6527187_SNP [dm6]	G	A	2.601e^-4	0.927	UPSTREAM CG15185 INTERGENIC
2L	14627404	2L_14627404_SNP [dm3] 2L_14627404_SNP [dm6]	A	T	2.602e^-4	0.927	INTRON osp	TF binding site BDTNP1_TFBS_dl
3R	18379947	3R_18379947_SNP [dm3] 3R_22554225_SNP [dm6]	A	G	2.604e^-4	0.927	UPSTREAM bond INTRON bond
2R	12534247	2R_12534247_SNP [dm3] 2R_16646742_SNP [dm6]	C	T	2.605e^-4	0.927	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14445300	3R_14445300_DEL [dm3] 3R_18619578_DEL [dm6]	TCTCGCT	T	2.606e^-4	0.927	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
3R	18371779	3R_18371779_SNP [dm3] 3R_22546057_SNP [dm6]	T	C	2.621e^-4	0.927	INTRON AdipoR
3R	20548721	3R_20548721_SNP [dm3] 3R_24722999_SNP [dm6]	C	A	2.623e^-4	0.927	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
X	7439736	X_7439736_SNP [dm3] X_7545703_SNP [dm6]	C	T	2.623e^-4	0.927	INTRON CG32719
X	15666584	X_15666584_SNP [dm3] X_15772551_SNP [dm6]	A	G	2.628e^-4	0.927	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
2L	16844934	2L_16844934_SNP [dm3] 2L_16844934_SNP [dm6]	A	T	2.641e^-4	0.927	INTRON CG13284
2L	9346044	2L_9346044_SNP [dm3] 2L_9346044_SNP [dm6]	C	T	2.643e^-4	0.927	INTERGENIC
2R	16842277	2R_16842277_SNP [dm3] 2R_20954772_SNP [dm6]	A	G	2.648e^-4	0.927	UTR_3_PRIME hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1822534	3L_1822534_SNP [dm3] 3L_1822534_SNP [dm6]	T	C	2.650e^-4	0.927	SYNONYMOUS_CODING GV1 DOWNSTREAM GV1
X	14121085	X_14121085_SNP [dm3] X_14227052_SNP [dm6]	C	A	2.651e^-4	0.927	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5471392	3L_5471392_SNP [dm3] 3L_5478292_SNP [dm6]	G	A	2.653e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	17082373	2R_17082373_SNP [dm3] 2R_21194868_SNP [dm6]	C	T	2.665e^-4	0.927	INTRON Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3721252	2L_3721252_SNP [dm3] 2L_3721252_SNP [dm6]	C	A	2.665e^-4	0.927	UPSTREAM Shaw INTRON Shaw
2L	8876620	2L_8876620_SNP [dm3] 2L_8876620_SNP [dm6]	C	G	2.666e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	15794724	3L_15794724_DEL [dm3] 3L_15801624_DEL [dm6]	AT	A	2.667e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19636320	2L_19636320_SNP [dm3] 2L_19636320_SNP [dm6]	A	G	2.680e^-4	0.927	INTRON Lar
X	1702402	X_1702402_DEL [dm3] X_1808369_DEL [dm6]	TCCTGCT	T	2.691e^-4	0.927	INTRON CG42666	TF binding site mE1_TFBS_chinmo
3R	23003425	3R_23003425_SNP [dm3] 3R_27177703_SNP [dm6]	T	C	2.695e^-4	0.927	INTRON Ser	TF binding site mE1_TFBS_cad
2R	4707649	2R_4707649_SNP [dm3] 2R_8820144_SNP [dm6]	A	G	2.696e^-4	0.927	INTRON sns
3L	18387272	3L_18387272_SNP [dm3] 3L_18394172_SNP [dm6]	G	T	2.699e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16844931	2L_16844931_SNP [dm3] 2L_16844931_SNP [dm6]	T	A	2.700e^-4	0.927	INTRON CG13284
2L	14628857	2L_14628857_SNP [dm3] 2L_14628857_SNP [dm6]	A	G	2.700e^-4	0.927	INTRON osp
2L	4455005	2L_4455005_SNP [dm3] 2L_4455005_SNP [dm6]	T	G	2.705e^-4	0.927	UPSTREAM CG15440 DOWNSTREAM Gs1l INTRON CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10766896	3L_10766896_SNP [dm3] 3L_10773796_SNP [dm6]	C	T	2.710e^-4	0.927	DOWNSTREAM CG43245 INTERGENIC
3R	19772517	3R_19772517_SNP [dm3] 3R_23946795_SNP [dm6]	C	A	2.717e^-4	0.927	NON_SYNONYMOUS_CODING CG12268
3R	19317050	3R_19317050_SNP [dm3] 3R_23491328_SNP [dm6]	A	C	2.718e^-4	0.927	INTERGENIC
2L	6887515	2L_6887515_SNP [dm3] 2L_6887515_SNP [dm6]	A	T	2.732e^-4	0.927	INTRON Nlg2
2L	10592611	2L_10592611_SNP [dm3] 2L_10592611_SNP [dm6]	A	T	2.739e^-4	0.927	INTRON Trim9
2L	8012757	2L_8012757_SNP [dm3] 2L_8012757_SNP [dm6]	A	C	2.741e^-4	0.927	UPSTREAM Tg INTRON Tg	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	6861837	2R_6861837_SNP [dm3] 2R_10974332_SNP [dm6]	A	G	2.761e^-4	0.927	INTERGENIC
2R	19500329	2R_19500329_SNP [dm3] 2R_23612806_SNP [dm6]	C	T	2.774e^-4	0.927	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13279087	3L_13279087_SNP [dm3] 3L_13285987_SNP [dm6]	A	G	2.800e^-4	0.927	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2R	6508423	2R_6508423_SNP [dm3] 2R_10620918_SNP [dm6]	T	C	2.810e^-4	0.927	INTRON CG11883
3R	13202519	3R_13202519_SNP [dm3] 3R_17376797_SNP [dm6]	G	A	2.811e^-4	0.927	INTRON Brf
X	12138945	X_12138945_SNP [dm3] X_12244912_SNP [dm6]	T	A	2.819e^-4	0.927	INTRON Ten-a
3R	14445334	3R_14445334_DEL [dm3] 3R_18619612_DEL [dm6]	TA	T	2.833e^-4	0.927	INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18993869	X_18993869_SNP [dm3] X_19099836_SNP [dm6]	C	T	2.838e^-4	0.927	INTERGENIC
3R	25610218	3R_25610218_SNP [dm3] 3R_29784496_SNP [dm6]	A	G	2.838e^-4	0.927	INTRON kay
2R	15316396	2R_15316396_SNP [dm3] 2R_19428891_SNP [dm6]	A	C	2.852e^-4	0.927	UTR_3_PRIME CalpA INTRON CalpA
3L	15634786	3L_15634786_SNP [dm3] 3L_15641686_SNP [dm6]	A	G	2.870e^-4	0.927	INTRON comm3
3L	17404459	3L_17404459_SNP [dm3] 3L_17411359_SNP [dm6]	A	G	2.875e^-4	0.927	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	22232356	3R_22232356_INS [dm3] 3R_26406634_INS [dm6]	A	AATCAAGT	2.878e^-4	0.927	INTERGENIC
X	12139251	X_12139251_SNP [dm3] X_12245218_SNP [dm6]	C	T	2.882e^-4	0.927	INTRON Ten-a
3L	16052800	3L_16052800_SNP [dm3] 3L_16059700_SNP [dm6]	T	A	2.888e^-4	0.927	INTRON Mbs
2R	4620842	2R_4620842_SNP [dm3] 2R_8733337_SNP [dm6]	G	C	2.889e^-4	0.927	UTR_5_PRIME stmA INTRON stmA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15763051	2L_15763051_INS [dm3] 2L_15763051_INS [dm6]	A	AA	2.891e^-4	0.927	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16424862	X_16424862_SNP [dm3] X_16530829_SNP [dm6]	G	A	2.892e^-4	0.927	INTRON para
X	3211089	X_3211089_SNP [dm3] X_3317056_SNP [dm6]	G	C	2.894e^-4	0.927	UPSTREAM CG10793 INTRON dnc & 1 other
3L	9345273	3L_9345273_SNP [dm3] 3L_9352173_SNP [dm6]	A	T	2.896e^-4	0.927	SYNONYMOUS_CODING UGP DOWNSTREAM PGRP-LF
2R	18590916	2R_18590916_SNP [dm3] 2R_22703411_SNP [dm6]	A	T	2.897e^-4	0.927	SPLICE_SITE_REGION CG30259 UTR_3_PRIME Obp59a INTRON CG30259
3L	1342704	3L_1342704_SNP [dm3] 3L_1342704_SNP [dm6]	G	T	2.904e^-4	0.927	UPSTREAM CG2199 DOWNSTREAM Ptp61F INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	18193595	X_18193595_SNP [dm3] X_18299562_SNP [dm6]	A	G	2.906e^-4	0.927	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	6111496	X_6111496_INS [dm3] X_6217463_INS [dm6]	T	TT	2.911e^-4	0.927	UTR_3_PRIME Btd
3L	7349119	3L_7349119_SNP [dm3] 3L_7356019_SNP [dm6]	G	A	2.922e^-4	0.927	INTRON CTCF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	9181896	3L_9181896_SNP [dm3] 3L_9188796_SNP [dm6]	T	C	2.922e^-4	0.927	INTERGENIC
X	4879788	X_4879788_SNP [dm3] X_4985755_SNP [dm6]	A	C	2.934e^-4	0.927	INTRON CR44833	regulatory region REDfly_CRMs
3R	22232340	3R_22232340_SNP [dm3] 3R_26406618_SNP [dm6]	A	T	2.935e^-4	0.927	INTERGENIC
2L	8325619	2L_8325619_SNP [dm3] 2L_8325619_SNP [dm6]	T	C	2.943e^-4	0.927	UPSTREAM CG7781 INTERGENIC
3R	13717429	3R_13717429_SNP [dm3] 3R_17891707_SNP [dm6]	T	A	2.943e^-4	0.927	INTRON Rim
2L	5053904	2L_5053904_SNP [dm3] 2L_5053904_SNP [dm6]	A	C	2.951e^-4	0.927	SYNONYMOUS_CODING CG14040 UPSTREAM eIF-3p40 DOWNSTREAM CG14036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	13279099	3L_13279099_SNP [dm3] 3L_13285999_SNP [dm6]	C	T	2.958e^-4	0.927	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
3L	2269274	3L_2269274_SNP [dm3] 3L_2269274_SNP [dm6]	C	T	2.958e^-4	0.927	SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25167501	3R_25167501_SNP [dm3] 3R_29341779_SNP [dm6]	A	G	2.966e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10995579	2L_10995579_SNP [dm3] 2L_10995579_SNP [dm6]	T	C	2.969e^-4	0.927	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	2145954	2L_2145954_SNP [dm3] 2L_2145954_SNP [dm6]	G	C	2.972e^-4	0.927	SYNONYMOUS_CODING CG11723 UPSTREAM tho2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12525014	2R_12525014_INS [dm3] 2R_16637509_INS [dm6]	A	ATTCA	2.978e^-4	0.927	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2R	17947305	2R_17947305_SNP [dm3] 2R_22059800_SNP [dm6]	G	T	2.994e^-4	0.927	NON_SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo
3R	9443727	3R_9443727_SNP [dm3] 3R_13618005_SNP [dm6]	A	G	2.998e^-4	0.927	EXON CR45680
3R	24964072	3R_24964072_SNP [dm3] 3R_29138350_SNP [dm6]	T	C	3.014e^-4	0.927	SYNONYMOUS_CODING CG14512 UPSTREAM CG14516 DOWNSTREAM Vha100-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8579742	2R_8579742_SNP [dm3] 2R_12692237_SNP [dm6]	T	G	3.019e^-4	0.927	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	14446847	3R_14446847_SNP [dm3] 3R_18621125_SNP [dm6]	T	A	3.020e^-4	0.927	UPSTREAM CG14304 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19934146	2R_19934146_SNP [dm3] 2R_24046623_SNP [dm6]	G	A	3.026e^-4	0.927	UPSTREAM sei DOWNSTREAM gammaSnap1 INTRON tsr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16649751	3L_16649751_SNP [dm3] 3L_16656651_SNP [dm6]	C	A	3.029e^-4	0.927	INTRON Baldspot
2L	14748974	2L_14748974_SNP [dm3] 2L_14748974_SNP [dm6]	T	G	3.031e^-4	0.927	INTERGENIC
2R	16545561	2R_16545561_INS [dm3] 2R_20658056_INS [dm6]	T	TT	3.032e^-4	0.927	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
2L	9347721	2L_9347721_SNP [dm3] 2L_9347721_SNP [dm6]	T	C	3.035e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	24388636	3R_24388636_INS [dm3] 3R_28562914_INS [dm6]	A	AATATA	3.041e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4308128	2L_4308128_SNP [dm3] 2L_4308128_SNP [dm6]	A	G	3.051e^-4	0.927	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11180322	3L_11180322_DEL [dm3] 3L_11187222_DEL [dm6]	AATGTTGGC	A	3.053e^-4	0.927	INTRON GlcAT-P
2L	7914671	2L_7914671_SNP [dm3] 2L_7914671_SNP [dm6]	T	A	3.054e^-4	0.927	INTRON Snoo
3L	2309452	3L_2309452_SNP [dm3] 3L_2309452_SNP [dm6]	T	C	3.062e^-4	0.927	INTERGENIC
3L	9543255	3L_9543255_DEL [dm3] 3L_9550155_DEL [dm6]	CTTTTG	A	3.062e^-4	0.927	INTRON CG42673
2R	15163257	2R_15163257_SNP [dm3] 2R_19275752_SNP [dm6]	G	A	3.066e^-4	0.927	UTR_5_PRIME rib INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	11068477	X_11068477_SNP [dm3] X_11174444_SNP [dm6]	C	T	3.075e^-4	0.927	INTERGENIC
3L	18387287	3L_18387287_SNP [dm3] 3L_18394187_SNP [dm6]	G	A	3.087e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18119638	2R_18119638_INS [dm3] 2R_22232133_INS [dm6]	A	AA	3.091e^-4	0.927	INTERGENIC
2R	16189193	2R_16189193_SNP [dm3] 2R_20301688_SNP [dm6]	T	C	3.099e^-4	0.927	UPSTREAM CR44640 INTERGENIC
3R	16766335	3R_16766335_SNP [dm3] 3R_20940613_SNP [dm6]	C	T	3.115e^-4	0.927	INTRON CG31191
3L	8986972	3L_8986972_SNP [dm3] 3L_8993872_SNP [dm6]	C	T	3.127e^-4	0.927	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15119201	3R_15119201_INS [dm3] 3R_19293479_INS [dm6]	A	ACTGTTAAGT	3.130e^-4	0.927	INTERGENIC
3R	6422527	3R_6422527_INS [dm3] 3R_10596805_INS [dm6]	A	AGCAGTGATA	3.139e^-4	0.927	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9440963	3R_9440963_DEL [dm3] 3R_13615241_DEL [dm6]	AATGGATAATTGCTGTAATG...	A	3.142e^-4	0.927	UPSTREAM CG9269 INTERGENIC
3R	9440986	3R_9440986_DEL [dm3] 3R_13615264_DEL [dm6]	ATGCTTGG	A	3.142e^-4	0.927	UPSTREAM CG9269 INTERGENIC
2L	10179944	2L_10179944_SNP [dm3] 2L_10179944_SNP [dm6]	T	C	3.143e^-4	0.927	INTRON CG44153	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6861825	2R_6861825_SNP [dm3] 2R_10974320_SNP [dm6]	C	T	3.144e^-4	0.927	INTERGENIC
2R	9590116	2R_9590116_INS [dm3] 2R_13702611_INS [dm6]	C	CC	3.150e^-4	0.927	INTRON fas
3R	22255613	3R_22255613_SNP [dm3] 3R_26429891_SNP [dm6]	C	G	3.150e^-4	0.927	DOWNSTREAM CR43434 INTERGENIC
X	3197402	X_3197402_SNP [dm3] X_3303369_SNP [dm6]	C	T	3.151e^-4	0.927	INTRON dnc
2R	15193023	2R_15193023_SNP [dm3] 2R_19305518_SNP [dm6]	T	G	3.165e^-4	0.927	NON_SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3R	18116489	3R_18116489_SNP [dm3] 3R_22290767_SNP [dm6]	C	A	3.165e^-4	0.927	INTRON SKIP
X	672997	X_672997_SNP [dm3] X_778964_SNP [dm6]	A	T	3.177e^-4	0.927	INTRON fz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16166940	X_16166940_SNP [dm3] X_16272907_SNP [dm6]	T	C	3.178e^-4	0.927	SYNONYMOUS_CODING Mfe2 INTRON kat80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8749094	X_8749094_INS [dm3] X_8855061_INS [dm6]	T	TTTTTACTATT...	3.179e^-4	0.927	INTRON CG12075
2L	1712031	2L_1712031_SNP [dm3] 2L_1712031_SNP [dm6]	G	T	3.181e^-4	0.927	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20436532	X_20436532_SNP [dm3] X_20565505_SNP [dm6]	C	G	3.192e^-4	0.927	NON_SYNONYMOUS_CODING RunxB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14903646	2L_14903646_SNP [dm3] 2L_14903646_SNP [dm6]	A	G	3.194e^-4	0.927	INTERGENIC
3R	18967135	3R_18967135_SNP [dm3] 3R_23141413_SNP [dm6]	C	T	3.200e^-4	0.927	NON_SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17729160	X_17729160_INS [dm3] X_17835127_INS [dm6]	T	TT	3.205e^-4	0.927	INTRON CG6398
3R	9440997	3R_9440997_SNP [dm3] 3R_13615275_SNP [dm6]	A	T	3.214e^-4	0.927	UPSTREAM CG9269 INTERGENIC
X	17908516	X_17908516_SNP [dm3] X_18014483_SNP [dm6]	G	A	3.224e^-4	0.927	SPLICE_SITE_REGION Sh UTR_5_PRIME Sh INTRON Sh
3L	21498360	3L_21498360_SNP [dm3] 3L_21505260_SNP [dm6]	A	G	3.247e^-4	0.927	SYNONYMOUS_CODING Glg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1983531	3R_1983531_SNP [dm3] 3R_6157809_SNP [dm6]	T	A	3.251e^-4	0.927	UPSTREAM CG31559 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17606188	3L_17606188_SNP [dm3] 3L_17613088_SNP [dm6]	T	A	3.254e^-4	0.927	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	4216119	2L_4216119_SNP [dm3] 2L_4216119_SNP [dm6]	A	G	3.259e^-4	0.927	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	6440408	3R_6440408_SNP [dm3] 3R_10614686_SNP [dm6]	C	G	3.261e^-4	0.927	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11220628	3L_11220628_SNP [dm3] 3L_11227528_SNP [dm6]	C	A	3.262e^-4	0.927	INTRON CG42671
2L	9059379	2L_9059379_SNP [dm3] 2L_9059379_SNP [dm6]	T	A	3.263e^-4	0.927	INTRON CG31708
X	18319792	X_18319792_SNP [dm3] X_18425759_SNP [dm6]	G	A	3.276e^-4	0.927	INTRON CG42323
2R	9084694	2R_9084694_DEL [dm3] 2R_13197189_DEL [dm6]	GCCAG	AAAA	3.277e^-4	0.927	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19066475	3R_19066475_SNP [dm3] 3R_23240753_SNP [dm6]	G	A	3.280e^-4	0.927	UPSTREAM CG4467 INTRON CG4467
2L	1629098	2L_1629098_SNP [dm3] 2L_1629098_SNP [dm6]	C	T	3.282e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15182751	3R_15182751_DEL [dm3] 3R_19357029_DEL [dm6]	ATT	A	3.283e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	18934182	X_18934182_DEL [dm3] X_19040149_DEL [dm6]	TA	G	3.290e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2726550	2L_2726550_SNP [dm3] 2L_2726550_SNP [dm6]	T	C	3.294e^-4	0.927	INTRON CG31689
3L	22786865	3L_22786865_SNP [dm3] 3L_22793765_SNP [dm6]	T	C	3.294e^-4	0.927	UTR_3_PRIME jim
3L	8702764	3L_8702764_SNP [dm3] 3L_8709664_SNP [dm6]	A	C	3.296e^-4	0.927	INTERGENIC	regulatory region REDfly_CRMs
3L	8580063	3L_8580063_SNP [dm3] 3L_8586963_SNP [dm6]	T	G	3.298e^-4	0.927	SPLICE_SITE_REGION CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
3L	1970017	3L_1970017_SNP [dm3] 3L_1970017_SNP [dm6]	G	A	3.300e^-4	0.927	UTR_5_PRIME CG1927 DOWNSTREAM CG11815
2L	3363453	2L_3363453_SNP [dm3] 2L_3363453_SNP [dm6]	T	C	3.300e^-4	0.927	INTRON CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12454718	X_12454718_INS [dm3] X_12560685_INS [dm6]	T	TG	3.302e^-4	0.927	INTRON CG43921	TF binding site mE1_TFBS_inv
2R	10279720	2R_10279720_SNP [dm3] 2R_14392215_SNP [dm6]	T	A	3.309e^-4	0.927	DOWNSTREAM CG10104 INTERGENIC
X	3211358	X_3211358_SNP [dm3] X_3317325_SNP [dm6]	C	T	3.314e^-4	0.927	UPSTREAM CG10793 INTRON dnc & 1 other
2L	8710662	2L_8710662_SNP [dm3] 2L_8710662_SNP [dm6]	G	A	3.342e^-4	0.927	INTRON raw
2L	10050922	2L_10050922_SNP [dm3] 2L_10050922_SNP [dm6]	T	C	3.354e^-4	0.927	UTR_3_PRIME CG33301 UPSTREAM CR44874
X	17719814	X_17719814_INS [dm3] X_17825781_INS [dm6]	T	CCCACCTCCGCCCCCGCCAA...	3.360e^-4	0.927		TF binding site mE1_TFBS_chinmo
3L	7615213	3L_7615213_SNP [dm3] 3L_7622113_SNP [dm6]	C	T	3.368e^-4	0.927	INTRON CG33275	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10024871	2R_10024871_SNP [dm3] 2R_14137366_SNP [dm6]	T	C	3.370e^-4	0.927	INTRON Prosap
3L	12469909	3L_12469909_SNP [dm3] 3L_12476809_SNP [dm6]	A	G	3.375e^-4	0.927	SYNONYMOUS_CODING CG10663
2L	20801740	2L_20801740_SNP [dm3] 2L_20801740_SNP [dm6]	A	G	3.384e^-4	0.927	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	4332832	2L_4332832_SNP [dm3] 2L_4332832_SNP [dm6]	C	T	3.384e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	7927482	3L_7927482_SNP [dm3] 3L_7934382_SNP [dm6]	A	G	3.394e^-4	0.927	UPSTREAM syd INTRON syd	TF binding site mE1_TFBS_cad
2L	9264385	2L_9264385_SNP [dm3] 2L_9264385_SNP [dm6]	G	T	3.402e^-4	0.927	INTRON Ggamma30A
3L	2349722	3L_2349722_SNP [dm3] 3L_2349722_SNP [dm6]	T	C	3.414e^-4	0.927	INTERGENIC
2L	7780198	2L_7780198_SNP [dm3] 2L_7780198_SNP [dm6]	T	C	3.424e^-4	0.927	SYNONYMOUS_CODING Uro
X	15317647	X_15317647_SNP [dm3] X_15423614_SNP [dm6]	A	G	3.425e^-4	0.927	INTRON Cngl
2L	4472518	2L_4472518_SNP [dm3] 2L_4472518_SNP [dm6]	T	A	3.446e^-4	0.927	INTRON ine
3L	10233158	3L_10233158_SNP [dm3] 3L_10240058_SNP [dm6]	G	A	3.447e^-4	0.927	UPSTREAM CR45403 INTERGENIC
X	11702769	X_11702769_SNP [dm3] X_11808736_SNP [dm6]	T	C	3.448e^-4	0.927	UTR_3_PRIME CG1578 DOWNSTREAM CG1578
3L	1285929	3L_1285929_SNP [dm3] 3L_1285929_SNP [dm6]	A	G	3.449e^-4	0.927	INTRON CG32333
3R	14040169	3R_14040169_SNP [dm3] 3R_18214447_SNP [dm6]	C	A	3.456e^-4	0.927	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10186328	2L_10186328_SNP [dm3] 2L_10186328_SNP [dm6]	G	T	3.460e^-4	0.927	INTRON Sur
2L	8301927	2L_8301927_SNP [dm3] 2L_8301927_SNP [dm6]	T	C	3.474e^-4	0.927	UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8301928	2L_8301928_SNP [dm3] 2L_8301928_SNP [dm6]	T	C	3.474e^-4	0.927	SPLICE_SITE_REGION wol UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	717765	2L_717765_SNP [dm3] 2L_717765_SNP [dm6]	C	T	3.482e^-4	0.927	INTERGENIC
3L	15210886	3L_15210886_SNP [dm3] 3L_15217786_SNP [dm6]	A	G	3.485e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4690579	2R_4690579_SNP [dm3] 2R_8803074_SNP [dm6]	C	T	3.487e^-4	0.927	INTRON sns	TF binding site BDTNP1_TFBS_twi
3L	9886722	3L_9886722_SNP [dm3] 3L_9893622_SNP [dm6]	A	G	3.491e^-4	0.927	SYNONYMOUS_CODING CG6709 UTR_3_PRIME CG14164 DOWNSTREAM CG14164 & 1 other
3R	16645947	3R_16645947_INS [dm3] 3R_20820225_INS [dm6]	G	GTTG	3.492e^-4	0.927	CODON_INSERTION CG17271 INTRON CG17271
X	7747855	X_7747855_SNP [dm3] X_7853822_SNP [dm6]	T	A	3.493e^-4	0.927	NON_SYNONYMOUS_CODING CG10920
3L	14473921	3L_14473921_SNP [dm3] 3L_14480821_SNP [dm6]	G	A	3.506e^-4	0.927	INTRON bbg
X	12901197	X_12901197_INS [dm3] X_13007164_INS [dm6]	G	GAGTGTG	3.506e^-4	0.927	INTRON rad
2R	15109855	2R_15109855_SNP [dm3] 2R_19222350_SNP [dm6]	T	C	3.508e^-4	0.927	INTRON hppy
3L	9209391	3L_9209391_SNP [dm3] 3L_9216291_SNP [dm6]	A	G	3.510e^-4	0.927	INTERGENIC
X	14121064	X_14121064_SNP [dm3] X_14227031_SNP [dm6]	G	A	3.512e^-4	0.927	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5601395	X_5601395_SNP [dm3] X_5707362_SNP [dm6]	C	T	3.514e^-4	0.927	INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9347802	2L_9347802_SNP [dm3] 2L_9347802_SNP [dm6]	A	C	3.523e^-4	0.927	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	12354736	X_12354736_SNP [dm3] X_12460703_SNP [dm6]	T	A	3.525e^-4	0.927	INTRON Rab40
2R	18838360	2R_18838360_SNP [dm3] 2R_22950837_SNP [dm6]	T	C	3.528e^-4	0.927	DOWNSTREAM CR32835 INTERGENIC
X	20436290	X_20436290_SNP [dm3] X_20565263_SNP [dm6]	G	A	3.529e^-4	0.927	SYNONYMOUS_CODING RunxB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7924288	2L_7924288_SNP [dm3] 2L_7924288_SNP [dm6]	A	G	3.530e^-4	0.927	INTRON Snoo
2R	10164898	2R_10164898_DEL [dm3] 2R_14277393_DEL [dm6]	CGAAAGCAAACACGATAAAT...	C	3.537e^-4	0.927	UTR_5_PRIME Ih
3L	15634348	3L_15634348_SNP [dm3] 3L_15641248_SNP [dm6]	A	T	3.544e^-4	0.927	INTRON comm3
3L	3786983	3L_3786983_SNP [dm3] 3L_3786983_SNP [dm6]	T	A	3.545e^-4	0.927	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18628946	3L_18628946_DEL [dm3] 3L_18635846_DEL [dm6]	CA	G	3.546e^-4	0.927	INTRON MYPT-75D
2R	16606065	2R_16606065_SNP [dm3] 2R_20718560_SNP [dm6]	C	A	3.557e^-4	0.927	INTRON dpr
X	16421273	X_16421273_SNP [dm3] X_16527240_SNP [dm6]	A	G	3.584e^-4	0.927	INTRON para	TF binding site BDTNP1_TFBS_dl
3L	12876182	3L_12876182_SNP [dm3] 3L_12883082_SNP [dm6]	C	G	3.584e^-4	0.927	INTERGENIC
3R	18731923	3R_18731923_SNP [dm3] 3R_22906201_SNP [dm6]	T	C	3.586e^-4	0.927	INTRON klg
3R	7161087	3R_7161087_SNP [dm3] 3R_11335365_SNP [dm6]	G	A	3.588e^-4	0.927	UTR_5_PRIME pros INTRON pros	TF binding site BDTNP1_TFBS_dl
2R	10954560	2R_10954560_SNP [dm3] 2R_15067055_SNP [dm6]	C	T	3.598e^-4	0.927	INTERGENIC
3L	18010607	3L_18010607_SNP [dm3] 3L_18017507_SNP [dm6]	T	A	3.601e^-4	0.927	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3R	19895131	3R_19895131_SNP [dm3] 3R_24069409_SNP [dm6]	C	T	3.604e^-4	0.927	INTRON 4EHP
2L	3176560	2L_3176560_SNP [dm3] 2L_3176560_SNP [dm6]	G	T	3.613e^-4	0.927	INTRON CG34393
3L	17002536	3L_17002536_SNP [dm3] 3L_17009436_SNP [dm6]	A	T	3.622e^-4	0.927	INTRON CG3764	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19252922	X_19252922_SNP [dm3] X_19358889_SNP [dm6]	T	G	3.626e^-4	0.927	INTRON kek5	TF binding site BDTNP1_TFBS_dl
2L	16421885	2L_16421885_SNP [dm3] 2L_16421885_SNP [dm6]	C	A	3.634e^-4	0.927	INTRON CG5888	TF binding site BDTNP1_TFBS_dl
3L	15017164	3L_15017164_SNP [dm3] 3L_15024064_SNP [dm6]	G	T	3.635e^-4	0.927	DOWNSTREAM CG32148 INTRON Sytbeta
2L	17948653	2L_17948653_SNP [dm3] 2L_17948653_SNP [dm6]	G	A	3.638e^-4	0.927	EXON CR44398
3L	9579372	3L_9579372_SNP [dm3] 3L_9586272_SNP [dm6]	T	A	3.644e^-4	0.927	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8804063	2R_8804063_INS [dm3] 2R_12916558_INS [dm6]	C	CC	3.646e^-4	0.927	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17977931	2R_17977931_DEL [dm3] 2R_22090426_DEL [dm6]	CGTATTTT	A	3.649e^-4	0.927	FRAME_SHIFT CG43393 SPLICE_SITE_DONOR CG43393 SPLICE_SITE_REGION CG43393 DOWNSTREAM CG44163 INTRON CG43393
2R	18568076	2R_18568076_SNP [dm3] 2R_22680571_SNP [dm6]	C	T	3.663e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	19317034	3R_19317034_SNP [dm3] 3R_23491312_SNP [dm6]	T	A	3.664e^-4	0.927	INTERGENIC
2L	10996543	2L_10996543_SNP [dm3] 2L_10996543_SNP [dm6]	A	C	3.665e^-4	0.927	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	18363426	3L_18363426_SNP [dm3] 3L_18370326_SNP [dm6]	T	A	3.674e^-4	0.927	INTERGENIC
X	4193791	X_4193791_SNP [dm3] X_4299758_SNP [dm6]	G	C	3.680e^-4	0.927	DOWNSTREAM CG12692 INTERGENIC
X	16426160	X_16426160_SNP [dm3] X_16532127_SNP [dm6]	G	A	3.683e^-4	0.927	INTRON para
3R	9734794	3R_9734794_DEL [dm3] 3R_13909072_DEL [dm6]	TG	A	3.685e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2R	18568014	2R_18568014_SNP [dm3] 2R_22680509_SNP [dm6]	G	T	3.688e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	19252948	X_19252948_SNP [dm3] X_19358915_SNP [dm6]	T	A	3.691e^-4	0.927	INTRON kek5	TF binding site BDTNP1_TFBS_dl
3L	15794720	3L_15794720_SNP [dm3] 3L_15801620_SNP [dm6]	A	G	3.697e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	17947362	2R_17947362_SNP [dm3] 2R_22059857_SNP [dm6]	G	A	3.704e^-4	0.927	SPLICE_SITE_REGION CG13501 SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo
3L	11955122	3L_11955122_SNP [dm3] 3L_11962022_SNP [dm6]	A	G	3.708e^-4	0.927	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	15193067	2R_15193067_SNP [dm3] 2R_19305562_SNP [dm6]	G	C	3.709e^-4	0.927	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
2L	8324559	2L_8324559_SNP [dm3] 2L_8324559_SNP [dm6]	C	T	3.713e^-4	0.927	INTRON CG7781
3L	5844269	3L_5844269_SNP [dm3] 3L_5851169_SNP [dm6]	G	A	3.722e^-4	0.927	INTERGENIC
3R	25433517	3R_25433517_INS [dm3] 3R_29607795_INS [dm6]	C	CGAGGTC	3.727e^-4	0.927	UPSTREAM Diedel2 INTRON alph
3L	16742797	3L_16742797_SNP [dm3] 3L_16749697_SNP [dm6]	T	C	3.729e^-4	0.927	INTERGENIC
2R	17976025	2R_17976025_SNP [dm3] 2R_22088520_SNP [dm6]	C	T	3.731e^-4	0.927	SYNONYMOUS_CODING CG13502 DOWNSTREAM CG43393
3R	13988665	3R_13988665_SNP [dm3] 3R_18162943_SNP [dm6]	T	A	3.735e^-4	0.927	SYNONYMOUS_CODING CG7218	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9440998	3R_9440998_SNP [dm3] 3R_13615276_SNP [dm6]	C	T	3.744e^-4	0.927	UPSTREAM CG9269 INTERGENIC
3R	19064083	3R_19064083_SNP [dm3] 3R_23238361_SNP [dm6]	G	A	3.756e^-4	0.927	INTRON CG4467
2L	18820321	2L_18820321_SNP [dm3] 2L_18820321_SNP [dm6]	C	A	3.763e^-4	0.927	NON_SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
2L	3360707	2L_3360707_SNP [dm3] 2L_3360707_SNP [dm6]	T	A	3.768e^-4	0.927	UTR_3_PRIME CG34394
3L	7999515	3L_7999515_SNP [dm3] 3L_8006415_SNP [dm6]	T	C	3.772e^-4	0.927	INTRON nmo
3R	24358971	3R_24358971_SNP [dm3] 3R_28533249_SNP [dm6]	C	T	3.780e^-4	0.927	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14474068	3L_14474068_SNP [dm3] 3L_14480968_SNP [dm6]	T	C	3.801e^-4	0.927	INTRON bbg
2R	12454411	2R_12454411_DEL [dm3] 2R_16566906_DEL [dm6]	AA	A	3.805e^-4	0.927	UTR_5_PRIME CG4945
X	10326062	X_10326062_SNP [dm3] X_10432029_SNP [dm6]	C	A	3.817e^-4	0.927	DOWNSTREAM CG12640 INTRON CG32683
X	11616155	X_11616155_SNP [dm3] X_11722122_SNP [dm6]	T	C	3.817e^-4	0.927	SYNONYMOUS_CODING Tango10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8325613	2L_8325613_SNP [dm3] 2L_8325613_SNP [dm6]	C	A	3.819e^-4	0.927	UPSTREAM CG7781 INTERGENIC
3L	4613997	3L_4613997_MNP [dm3] 3L_4613997_MNP [dm6]	ATT	CCG	3.820e^-4	0.927	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	16167291	X_16167291_SNP [dm3] X_16273258_SNP [dm6]	T	C	3.826e^-4	0.927	SYNONYMOUS_CODING Mfe2 INTRON kat80	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	19880897	2L_19880897_SNP [dm3] 2L_19880897_SNP [dm6]	T	C	3.843e^-4	0.927	INTRON sick
X	8018665	X_8018665_SNP [dm3] X_8124632_SNP [dm6]	C	A	3.844e^-4	0.927	INTRON cyr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	715018	3L_715018_SNP [dm3] 3L_715018_SNP [dm6]	G	A	3.846e^-4	0.927	UPSTREAM CR45411 INTERGENIC
X	15317677	X_15317677_SNP [dm3] X_15423644_SNP [dm6]	C	T	3.851e^-4	0.927	INTRON Cngl
3L	9183508	3L_9183508_SNP [dm3] 3L_9190408_SNP [dm6]	G	T	3.851e^-4	0.927	INTERGENIC
2R	17789477	2R_17789477_SNP [dm3] 2R_21901972_SNP [dm6]	C	T	3.854e^-4	0.927	INTRON Fili
2R	17947466	2R_17947466_SNP [dm3] 2R_22059961_SNP [dm6]	C	T	3.860e^-4	0.927	SYNONYMOUS_CODING CG13501 UPSTREAM Snp	TF binding site mE1_TFBS_chinmo
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	3.865e^-4	0.927	INTRON sick
X	16226437	X_16226437_SNP [dm3] X_16332404_SNP [dm6]	T	A	3.868e^-4	0.927	UPSTREAM CG9921 INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2321017	3L_2321017_SNP [dm3] 3L_2321017_SNP [dm6]	C	A	3.893e^-4	0.927	INTERGENIC
X	11566012	X_11566012_DEL [dm3] X_11671979_DEL [dm6]	CTAATTATCCAAC...	C	3.894e^-4	0.927	INTRON Ptp10D
2L	13099487	2L_13099487_SNP [dm3] 2L_13099487_SNP [dm6]	T	G	3.902e^-4	0.927	INTERGENIC
3R	3108874	3R_3108874_SNP [dm3] 3R_7283152_SNP [dm6]	G	T	3.902e^-4	0.927	INTRON rn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10383681	3L_10383681_SNP [dm3] 3L_10390581_SNP [dm6]	G	C	3.907e^-4	0.927	INTERGENIC
2R	15702502	2R_15702502_SNP [dm3] 2R_19814997_SNP [dm6]	T	C	3.910e^-4	0.927	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
2R	12466448	2R_12466448_SNP [dm3] 2R_16578943_SNP [dm6]	G	A	3.917e^-4	0.927	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	6167713	X_6167713_SNP [dm3] X_6273680_SNP [dm6]	C	T	3.924e^-4	0.927	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8578063	2R_8578063_SNP [dm3] 2R_12690558_SNP [dm6]	T	G	3.925e^-4	0.927	UPSTREAM CG30053 DOWNSTREAM CG8768 INTRON Obp49a
2R	9686527	2R_9686527_SNP [dm3] 2R_13799022_SNP [dm6]	A	G	3.930e^-4	0.927	INTRON Cpr50Cb
2L	14416453	2L_14416453_SNP [dm3] 2L_14416453_SNP [dm6]	A	G	3.932e^-4	0.927	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8301983	2L_8301983_SNP [dm3] 2L_8301983_SNP [dm6]	C	T	3.939e^-4	0.927	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8581505	2R_8581505_DEL [dm3] 2R_12694000_DEL [dm6]	TT	T	3.942e^-4	0.927	INTERGENIC
3L	11398624	3L_11398624_SNP [dm3] 3L_11405524_SNP [dm6]	G	C	3.946e^-4	0.927	UPSTREAM CR44363 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16521802	3R_16521802_SNP [dm3] 3R_20696080_SNP [dm6]	T	C	3.947e^-4	0.927	INTRON Oamb
3R	15785368	3R_15785368_SNP [dm3] 3R_19959646_SNP [dm6]	C	T	3.959e^-4	0.927	INTRON Hs6st
3R	18795126	3R_18795126_SNP [dm3] 3R_22969404_SNP [dm6]	A	G	3.959e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4348786	3L_4348786_SNP [dm3] 3L_4348786_SNP [dm6]	C	T	3.965e^-4	0.927	DOWNSTREAM CR45156 INTRON Cip4
2R	16747367	2R_16747367_SNP [dm3] 2R_20859862_SNP [dm6]	C	T	3.972e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24970422	3R_24970422_SNP [dm3] 3R_29144700_SNP [dm6]	A	T	3.974e^-4	0.927	SYNONYMOUS_CODING CG14516 DOWNSTREAM CG14511
X	2303602	X_2303602_SNP [dm3] X_2409569_SNP [dm6]	A	G	3.976e^-4	0.927	UTR_3_PRIME CG12496	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	22785295	3L_22785295_SNP [dm3] 3L_22792195_SNP [dm6]	C	G	3.984e^-4	0.927	UTR_3_PRIME jim
2L	1654679	2L_1654679_SNP [dm3] 2L_1654679_SNP [dm6]	T	C	3.985e^-4	0.927	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	1802269	3R_1802269_SNP [dm3] 3R_5976547_SNP [dm6]	T	G	3.989e^-4	0.927	INTRON Obp83b
X	18319807	X_18319807_SNP [dm3] X_18425774_SNP [dm6]	C	T	3.994e^-4	0.927	INTRON CG42323
2R	18558233	2R_18558233_SNP [dm3] 2R_22670728_SNP [dm6]	G	A	4.017e^-4	0.927	UTR_5_PRIME RYBP UPSTREAM RYBP DOWNSTREAM CG13516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	9355625	2R_9355625_SNP [dm3] 2R_13468120_SNP [dm6]	T	A	4.023e^-4	0.927	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2R	16864513	2R_16864513_SNP [dm3] 2R_20977008_SNP [dm6]	T	C	4.028e^-4	0.927	UPSTREAM CG9344 DOWNSTREAM CG15650 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	12021391	3L_12021391_SNP [dm3] 3L_12028291_SNP [dm6]	C	T	4.029e^-4	0.927	DOWNSTREAM CR43994 INTRON rols
2L	13873806	2L_13873806_SNP [dm3] 2L_13873806_SNP [dm6]	A	G	4.029e^-4	0.927	INTRON CenG1A
3L	9364222	3L_9364222_SNP [dm3] 3L_9371122_SNP [dm6]	G	A	4.030e^-4	0.927	UPSTREAM Fdxh DOWNSTREAM CG4452 & 1 other INTRON Fdxh
3R	9443740	3R_9443740_SNP [dm3] 3R_13618018_SNP [dm6]	A	G	4.040e^-4	0.927	EXON CR45680
3L	12606258	3L_12606258_INS [dm3] 3L_12613158_INS [dm6]	T	TCTGCA	4.049e^-4	0.927	INTRON caup	silencer mE1_HDAC_PRE
3L	11995268	3L_11995268_SNP [dm3] 3L_12002168_SNP [dm6]	T	C	4.051e^-4	0.927	UPSTREAM CG6928 INTRON Pop2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17319291	3L_17319291_SNP [dm3] 3L_17326191_SNP [dm6]	G	A	4.053e^-4	0.927	UPSTREAM CG13725 INTERGENIC
2R	18564810	2R_18564810_SNP [dm3] 2R_22677305_SNP [dm6]	A	G	4.057e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14019971	2R_14019971_SNP [dm3] 2R_18132466_SNP [dm6]	T	G	4.058e^-4	0.927	SYNONYMOUS_CODING Hsf	TF binding site mE1_TFBS_sens
3R	7610011	3R_7610011_SNP [dm3] 3R_11784289_SNP [dm6]	T	C	4.063e^-4	0.927	SYNONYMOUS_CODING CG17360
3L	22474252	3L_22474252_DEL [dm3] 3L_22481152_DEL [dm6]	ATATTATATCAGC...	A	4.069e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	22474265	3L_22474265_INS [dm3] 3L_22481165_INS [dm6]	G	GAGATGG	4.069e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	16164355	X_16164355_SNP [dm3] X_16270322_SNP [dm6]	A	C	4.076e^-4	0.927	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	515666	2L_515666_SNP [dm3] 2L_515666_SNP [dm6]	A	G	4.080e^-4	0.927	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6722882	2R_6722882_SNP [dm3] 2R_10835377_SNP [dm6]	T	C	4.086e^-4	0.927	INTRON CG12344	TF binding site BDTNP1_TFBS_twi
3R	17760408	3R_17760408_SNP [dm3] 3R_21934686_SNP [dm6]	A	G	4.087e^-4	0.927	INTERGENIC
3L	17319289	3L_17319289_SNP [dm3] 3L_17326189_SNP [dm6]	G	T	4.088e^-4	0.927	UPSTREAM CG13725 INTERGENIC
3L	3893652	3L_3893652_SNP [dm3] 3L_3893652_SNP [dm6]	G	A	4.095e^-4	0.927	SYNONYMOUS_CODING Fie UPSTREAM snRNA:U11
2R	8444334	2R_8444334_SNP [dm3] 2R_12556829_SNP [dm6]	C	T	4.095e^-4	0.927	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2549196	3L_2549196_INS [dm3] 3L_2549196_INS [dm6]	T	TGTT	4.104e^-4	0.927	INTRON Spn
3L	17799788	3L_17799788_INS [dm3] 3L_17806688_INS [dm6]	A	AA	4.108e^-4	0.927	UTR_3_PRIME CG32191 UPSTREAM CG32187
X	18834185	X_18834185_SNP [dm3] X_18940152_SNP [dm6]	A	G	4.109e^-4	0.927	INTRON CG43759	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	22227128	3R_22227128_SNP [dm3] 3R_26401406_SNP [dm6]	G	T	4.114e^-4	0.927	DOWNSTREAM ppk15 INTERGENIC
2R	3783669	2R_3783669_INS [dm3] 2R_7896164_INS [dm6]	T	TT	4.122e^-4	0.927	INTRON CG30377	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19784654	3R_19784654_SNP [dm3] 3R_23958932_SNP [dm6]	A	G	4.124e^-4	0.927	UPSTREAM Aats-glupro INTRON AP-1sigma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7773536	3R_7773536_SNP [dm3] 3R_11947814_SNP [dm6]	A	T	4.130e^-4	0.927	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl
3R	24345298	3R_24345298_SNP [dm3] 3R_28519576_SNP [dm6]	T	A	4.139e^-4	0.927	UTR_3_PRIME CG31051 DOWNSTREAM Dhc98D	TF binding site mE1_TFBS_cad
2R	8877465	2R_8877465_SNP [dm3] 2R_12989960_SNP [dm6]	A	G	4.140e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2R	18855621	2R_18855621_SNP [dm3] 2R_22968098_SNP [dm6]	T	C	4.147e^-4	0.927	INTERGENIC
3R	7762418	3R_7762418_SNP [dm3] 3R_11936696_SNP [dm6]	T	C	4.159e^-4	0.927	INTRON Cad87A
2R	8106274	2R_8106274_SNP [dm3] 2R_12218769_SNP [dm6]	C	T	4.160e^-4	0.927	INTERGENIC
2L	1712092	2L_1712092_SNP [dm3] 2L_1712092_SNP [dm6]	T	C	4.165e^-4	0.927	SPLICE_SITE_REGION frtz DOWNSTREAM mRpL48 INTRON frtz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23806157	3R_23806157_SNP [dm3] 3R_27980435_SNP [dm6]	T	G	4.168e^-4	0.927	INTRON betaTub97EF
3L	17028409	3L_17028409_SNP [dm3] 3L_17035309_SNP [dm6]	A	T	4.169e^-4	0.927	UPSTREAM beg INTERGENIC
3L	15391612	3L_15391612_SNP [dm3] 3L_15398512_SNP [dm6]	A	G	4.172e^-4	0.927	INTERGENIC
3R	24475824	3R_24475824_SNP [dm3] 3R_28650102_SNP [dm6]	G	C	4.186e^-4	0.927	UTR_3_PRIME CG31050
2R	18557856	2R_18557856_SNP [dm3] 2R_22670351_SNP [dm6]	T	C	4.191e^-4	0.927	UTR_3_PRIME CG13516 UPSTREAM RYBP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_GATAe mE1_TFBS_HSA
2R	19281258	2R_19281258_SNP [dm3] 2R_23393735_SNP [dm6]	A	T	4.209e^-4	0.927	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2L	2738874	2L_2738874_SNP [dm3] 2L_2738874_SNP [dm6]	C	T	4.213e^-4	0.927	SYNONYMOUS_CODING CG31689
3L	12899998	3L_12899998_SNP [dm3] 3L_12906898_SNP [dm6]	C	A	4.221e^-4	0.927	INTERGENIC
2L	5726945	2L_5726945_SNP [dm3] 2L_5726945_SNP [dm6]	C	A	4.222e^-4	0.927	UTR_3_PRIME CG14006 DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_chinmo
X	15663443	X_15663443_SNP [dm3] X_15769410_SNP [dm6]	A	G	4.229e^-4	0.927	UTR_3_PRIME CG17209 UPSTREAM CG33172	TF binding site mE1_TFBS_cad mE1_TFBS_ttk
2L	3412898	2L_3412898_SNP [dm3] 2L_3412898_SNP [dm6]	G	A	4.232e^-4	0.927	INTRON pgant2
2R	8581028	2R_8581028_SNP [dm3] 2R_12693523_SNP [dm6]	T	G	4.237e^-4	0.927	UPSTREAM CG8768 INTERGENIC
2R	16545546	2R_16545546_SNP [dm3] 2R_20658041_SNP [dm6]	C	T	4.239e^-4	0.927	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
2R	6740106	2R_6740106_SNP [dm3] 2R_10852601_SNP [dm6]	A	C	4.241e^-4	0.927	UPSTREAM CR45136 INTRON CG30015
2L	10435610	2L_10435610_INS [dm3] 2L_10435610_INS [dm6]	C	CC	4.246e^-4	0.927	UTR_5_PRIME CG5337 UPSTREAM holn1
2L	14710880	2L_14710880_SNP [dm3] 2L_14710880_SNP [dm6]	A	T	4.246e^-4	0.927	INTERGENIC
3R	18419021	3R_18419021_SNP [dm3] 3R_22593299_SNP [dm6]	G	A	4.253e^-4	0.927	INTRON Efa6	TF binding site mE1_TFBS_chinmo
2L	15090489	2L_15090489_SNP [dm3] 2L_15090489_SNP [dm6]	T	A	4.253e^-4	0.927	INTRON CG15270
3L	10563298	3L_10563298_SNP [dm3] 3L_10570198_SNP [dm6]	A	G	4.257e^-4	0.927	INTRON A2bp1	TF binding site mE1_TFBS_HSA
X	3384336	X_3384336_DEL [dm3] X_3490303_DEL [dm6]	TAAT	T	4.262e^-4	0.927	UTR_3_PRIME CG10803 DOWNSTREAM Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16376688	2R_16376688_SNP [dm3] 2R_20489183_SNP [dm6]	C	A	4.266e^-4	0.927	INTERGENIC
2R	18453008	2R_18453008_SNP [dm3] 2R_22565503_SNP [dm6]	T	A	4.269e^-4	0.927	INTRON dnr1
3L	3024185	3L_3024185_SNP [dm3] 3L_3024185_SNP [dm6]	A	T	4.269e^-4	0.927	UTR_3_PRIME aly DOWNSTREAM aly
2L	735550	2L_735550_SNP [dm3] 2L_735550_SNP [dm6]	G	A	4.274e^-4	0.927	INTERGENIC
3R	13272803	3R_13272803_SNP [dm3] 3R_17447081_SNP [dm6]	T	A	4.276e^-4	0.927	DOWNSTREAM CG5873 INTRON Eh
2L	21802168	2L_21802168_SNP [dm3] 2L_21802168_SNP [dm6]	C	A	4.280e^-4	0.927	INTERGENIC
3L	14621698	3L_14621698_DEL [dm3] 3L_14628598_DEL [dm6]	TT	T	4.283e^-4	0.927	FRAME_SHIFT RecQ5 UTR_3_PRIME RecQ5 DOWNSTREAM CG9628	TF binding site mE1_TFBS_sens
2L	17542255	2L_17542255_SNP [dm3] 2L_17542255_SNP [dm6]	T	A	4.298e^-4	0.927	EXON CR43304
X	793801	X_793801_DEL [dm3] X_899768_DEL [dm6]	AAAT	A	4.301e^-4	0.927	UPSTREAM CG43867 INTRON CG43867	TF binding site mE1_TFBS_sens
3R	16521866	3R_16521866_SNP [dm3] 3R_20696144_SNP [dm6]	A	C	4.306e^-4	0.927	INTRON Oamb
3L	14411545	3L_14411545_SNP [dm3] 3L_14418445_SNP [dm6]	T	G	4.308e^-4	0.927	INTRON bbg
X	21182789	X_21182789_SNP [dm3] X_21311762_SNP [dm6]	T	A	4.312e^-4	0.927	INTRON CG1801
2R	19348179	2R_19348179_SNP [dm3] 2R_23460656_SNP [dm6]	C	T	4.314e^-4	0.927	INTRON CG43795
X	2579750	X_2579750_SNP [dm3] X_2685717_SNP [dm6]	T	C	4.316e^-4	0.927	UTR_5_PRIME per
3L	9765367	3L_9765367_SNP [dm3] 3L_9772267_SNP [dm6]	G	A	4.327e^-4	0.927	INTRON CG8177
3L	12947254	3L_12947254_SNP [dm3] 3L_12954154_SNP [dm6]	A	C	4.329e^-4	0.927	SYNONYMOUS_CODING CG10752	TF binding site mE1_TFBS_HSA
X	8749067	X_8749067_SNP [dm3] X_8855034_SNP [dm6]	G	C	4.346e^-4	0.927	INTRON CG12075
3L	14406579	3L_14406579_SNP [dm3] 3L_14413479_SNP [dm6]	G	A	4.352e^-4	0.927	SYNONYMOUS_CODING bbg DOWNSTREAM CG3919
2L	4777856	2L_4777856_SNP [dm3] 2L_4777856_SNP [dm6]	C	T	4.358e^-4	0.927	INTRON CG15630
3L	13153855	3L_13153855_SNP [dm3] 3L_13160755_SNP [dm6]	A	G	4.363e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14035714	3R_14035714_SNP [dm3] 3R_18209992_SNP [dm6]	G	C	4.363e^-4	0.927	DOWNSTREAM CG44158 INTRON CG7985
3L	3966409	3L_3966409_SNP [dm3] 3L_3966409_SNP [dm6]	A	G	4.368e^-4	0.927	INTERGENIC
2R	10278312	2R_10278312_SNP [dm3] 2R_14390807_SNP [dm6]	T	A	4.370e^-4	0.927	NON_SYNONYMOUS_CODING CG10104	TF binding site mE1_TFBS_cad
2R	7132789	2R_7132789_SNP [dm3] 2R_11245284_SNP [dm6]	A	G	4.381e^-4	0.927	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3L	7615011	3L_7615011_SNP [dm3] 3L_7621911_SNP [dm6]	G	T	4.388e^-4	0.927	INTRON CG33275	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18275404	X_18275404_SNP [dm3] X_18381371_SNP [dm6]	G	A	4.389e^-4	0.927	UTR_3_PRIME CG6179 DOWNSTREAM betaCOP	TF binding site mE1_TFBS_cad
2R	11524542	2R_11524542_INS [dm3] 2R_15637037_INS [dm6]	T	TT	4.391e^-4	0.927	INTRON CG42524
2R	8579566	2R_8579566_SNP [dm3] 2R_12692061_SNP [dm6]	G	C	4.401e^-4	0.927	INTRON CG8768	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18192793	X_18192793_SNP [dm3] X_18298760_SNP [dm6]	A	G	4.416e^-4	0.927	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16606073	X_16606073_SNP [dm3] X_16712040_SNP [dm6]	C	G	4.422e^-4	0.927	NON_SYNONYMOUS_CODING CG13008 DOWNSTREAM CG4678
3L	14421513	3L_14421513_SNP [dm3] 3L_14428413_SNP [dm6]	C	T	4.428e^-4	0.927	INTRON bbg
2R	17978020	2R_17978020_SNP [dm3] 2R_22090515_SNP [dm6]	G	T	4.431e^-4	0.927	NON_SYNONYMOUS_CODING CG43393 DOWNSTREAM CG44163 & 1 other
X	18319786	X_18319786_SNP [dm3] X_18425753_SNP [dm6]	A	T	4.432e^-4	0.927	INTRON CG42323
2L	6665383	2L_6665383_SNP [dm3] 2L_6665383_SNP [dm6]	A	G	4.434e^-4	0.927	SYNONYMOUS_CODING cup UTR_5_PRIME CG34310 DOWNSTREAM Galt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8875304	2R_8875304_DEL [dm3] 2R_12987799_DEL [dm6]	TGCTGT	T	4.436e^-4	0.927	INTERGENIC
3R	13971948	3R_13971948_SNP [dm3] 3R_18146226_SNP [dm6]	T	G	4.436e^-4	0.927	INTERGENIC
2L	19399484	2L_19399484_SNP [dm3] 2L_19399484_SNP [dm6]	T	A	4.439e^-4	0.927	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14416580	2L_14416580_SNP [dm3] 2L_14416580_SNP [dm6]	T	G	4.442e^-4	0.927	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12225262	3L_12225262_DEL [dm3] 3L_12232162_DEL [dm6]	GAC	G	4.449e^-4	0.927	INTRON app
2R	8579616	2R_8579616_SNP [dm3] 2R_12692111_SNP [dm6]	T	G	4.449e^-4	0.927	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9367296	3L_9367296_SNP [dm3] 3L_9374196_SNP [dm6]	T	A	4.457e^-4	0.927	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	20081954	3L_20081954_SNP [dm3] 3L_20088854_SNP [dm6]	G	C	4.457e^-4	0.927	UTR_5_PRIME sNPF-R INTRON sNPF-R
2L	15762147	2L_15762147_DEL [dm3] 2L_15762147_DEL [dm6]	GTTG	G	4.475e^-4	0.927	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26894539	3R_26894539_SNP [dm3] 3R_31068817_SNP [dm6]	A	G	4.500e^-4	0.927	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
X	10851887	X_10851887_SNP [dm3] X_10957854_SNP [dm6]	C	T	4.502e^-4	0.927	INTRON Myo10A
3L	14477908	3L_14477908_SNP [dm3] 3L_14484808_SNP [dm6]	C	A	4.522e^-4	0.927	INTRON bbg
2L	3630242	2L_3630242_SNP [dm3] 2L_3630242_SNP [dm6]	G	A	4.553e^-4	0.927	INTRON for
3L	21500860	3L_21500860_SNP [dm3] 3L_21507760_SNP [dm6]	C	T	4.562e^-4	0.927	UPSTREAM M6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	9095069	2L_9095069_SNP [dm3] 2L_9095069_SNP [dm6]	C	G	4.570e^-4	0.927	INTERGENIC
2L	3977696	2L_3977696_SNP [dm3] 2L_3977696_SNP [dm6]	T	C	4.571e^-4	0.927	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12389709	2R_12389709_SNP [dm3] 2R_16502204_SNP [dm6]	G	C	4.572e^-4	0.927	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3L	9579314	3L_9579314_SNP [dm3] 3L_9586214_SNP [dm6]	T	A	4.573e^-4	0.927	INTRON CG42673
2L	13531717	2L_13531717_SNP [dm3] 2L_13531717_SNP [dm6]	T	C	4.580e^-4	0.927	UPSTREAM CG33644 DOWNSTREAM CG33642 & 1 other INTRON B4
2R	16535209	2R_16535209_SNP [dm3] 2R_20647704_SNP [dm6]	G	A	4.586e^-4	0.927	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sbb
2R	19342897	2R_19342897_SNP [dm3] 2R_23455374_SNP [dm6]	C	T	4.610e^-4	0.927	INTRON CG43795
X	6489687	X_6489687_SNP [dm3] X_6595654_SNP [dm6]	T	C	4.613e^-4	0.927	NON_SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14950627	3L_14950627_SNP [dm3] 3L_14957527_SNP [dm6]	A	T	4.614e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	20511982	2L_20511982_SNP [dm3] 2L_20511982_SNP [dm6]	T	C	4.616e^-4	0.927	INTERGENIC
3L	683870	3L_683870_SNP [dm3] 3L_683870_SNP [dm6]	T	C	4.616e^-4	0.927	SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	8438797	2R_8438797_SNP [dm3] 2R_12551292_SNP [dm6]	T	C	4.621e^-4	0.927	INTRON fra
3L	2309453	3L_2309453_SNP [dm3] 3L_2309453_SNP [dm6]	G	A	4.627e^-4	0.927	INTERGENIC
3R	20392707	3R_20392707_SNP [dm3] 3R_24566985_SNP [dm6]	C	A	4.635e^-4	0.927	INTRON CG13624	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8301891	2L_8301891_SNP [dm3] 2L_8301891_SNP [dm6]	C	G	4.635e^-4	0.927	UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18868196	2R_18868196_SNP [dm3] 2R_22980673_SNP [dm6]	G	T	4.637e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	659331	X_659331_INS [dm3] X_765298_INS [dm6]	A	AA	4.638e^-4	0.927	UPSTREAM RpL22 EXON CR44966	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	7227500	2L_7227500_SNP [dm3] 2L_7227500_SNP [dm6]	A	T	4.661e^-4	0.927	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA
3L	14950648	3L_14950648_SNP [dm3] 3L_14957548_SNP [dm6]	A	C	4.662e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	12354737	X_12354737_SNP [dm3] X_12460704_SNP [dm6]	A	C	4.668e^-4	0.927	INTRON Rab40
X	19253162	X_19253162_SNP [dm3] X_19359129_SNP [dm6]	C	A	4.671e^-4	0.927	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25210861	3R_25210861_DEL [dm3] 3R_29385139_DEL [dm6]	TAT	T	4.674e^-4	0.927	INTRON Ptp99A
2L	16374411	2L_16374411_INS [dm3] 2L_16374411_INS [dm6]	A	AA	4.676e^-4	0.927	INTERGENIC
X	8988385	X_8988385_SNP [dm3] X_9094352_SNP [dm6]	T	C	4.682e^-4	0.927	INTRON CG7766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	17008891	3L_17008891_SNP [dm3] 3L_17015791_SNP [dm6]	C	G	4.686e^-4	0.927	UTR_5_PRIME CG6664 UPSTREAM CG7728	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4707650	2R_4707650_SNP [dm3] 2R_8820145_SNP [dm6]	A	G	4.697e^-4	0.927	INTRON sns
3R	25167563	3R_25167563_SNP [dm3] 3R_29341841_SNP [dm6]	A	T	4.706e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16425294	X_16425294_SNP [dm3] X_16531261_SNP [dm6]	A	G	4.706e^-4	0.927	INTRON para
2L	8239946	2L_8239946_SNP [dm3] 2L_8239946_SNP [dm6]	G	A	4.708e^-4	0.927	UPSTREAM Pvr DOWNSTREAM Spn28F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18172272	2L_18172272_SNP [dm3] 2L_18172272_SNP [dm6]	A	G	4.709e^-4	0.927	INTRON CG42750
2R	17466599	2R_17466599_SNP [dm3] 2R_21579094_SNP [dm6]	C	T	4.710e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18393794	3R_18393794_SNP [dm3] 3R_22568072_SNP [dm6]	A	G	4.711e^-4	0.927	INTERGENIC
X	11276635	X_11276635_SNP [dm3] X_11382602_SNP [dm6]	A	G	4.729e^-4	0.927	INTRON dlg1
2L	20405855	2L_20405855_SNP [dm3] 2L_20405855_SNP [dm6]	A	T	4.730e^-4	0.927	INTRON CG10947
3L	3664779	3L_3664779_SNP [dm3] 3L_3664779_SNP [dm6]	C	A	4.736e^-4	0.927	INTERGENIC
X	19378813	X_19378813_SNP [dm3] X_19484780_SNP [dm6]	G	T	4.737e^-4	0.927	DOWNSTREAM CR43260 & 2 others INTERGENIC
3L	22790234	3L_22790234_SNP [dm3] 3L_22797134_SNP [dm6]	T	C	4.745e^-4	0.927	UTR_3_PRIME jim
3R	3866550	3R_3866550_SNP [dm3] 3R_8040828_SNP [dm6]	A	C	4.750e^-4	0.927	UPSTREAM CG43060 INTERGENIC
3L	14916578	3L_14916578_INS [dm3] 3L_14923478_INS [dm6]	A	AAATGAAGAA	4.751e^-4	0.927	INTRON DCX-EMAP
3L	14621726	3L_14621726_SNP [dm3] 3L_14628626_SNP [dm6]	C	T	4.753e^-4	0.927	SYNONYMOUS_CODING RecQ5 UTR_3_PRIME RecQ5 DOWNSTREAM CG9628	TF binding site mE1_TFBS_sens
2L	19880511	2L_19880511_SNP [dm3] 2L_19880511_SNP [dm6]	G	A	4.756e^-4	0.927	INTRON sick
2R	8846940	2R_8846940_SNP [dm3] 2R_12959435_SNP [dm6]	T	G	4.768e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	633653	X_633653_SNP [dm3] X_739620_SNP [dm6]	G	A	4.771e^-4	0.927	INTRON sdk
3R	27101134	3R_27101134_SNP [dm3] 3R_31275412_SNP [dm6]	C	T	4.781e^-4	0.927	INTERGENIC
X	12139214	X_12139214_SNP [dm3] X_12245181_SNP [dm6]	T	C	4.796e^-4	0.927	INTRON Ten-a
3L	15276655	3L_15276655_DEL [dm3] 3L_15283555_DEL [dm6]	ATCCAGAGCGC...	A	4.822e^-4	0.927	INTERGENIC
3R	24307024	3R_24307024_SNP [dm3] 3R_28481302_SNP [dm6]	C	T	4.826e^-4	0.927	INTERGENIC
3R	22158045	3R_22158045_SNP [dm3] 3R_26332323_SNP [dm6]	A	T	4.827e^-4	0.927	INTRON CG33970	insulator Insulator_Class_I.mE01
2L	14416586	2L_14416586_DEL [dm3] 2L_14416586_DEL [dm6]	AT	A	4.827e^-4	0.927	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	23846078	3L_23846078_SNP [dm3] 3L_23852978_SNP [dm6]	G	C	4.829e^-4	0.927	INTRON CG40470
3R	9769533	3R_9769533_SNP [dm3] 3R_13943811_SNP [dm6]	C	T	4.835e^-4	0.927	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5709016	3R_5709016_SNP [dm3] 3R_9883294_SNP [dm6]	A	G	4.837e^-4	0.927	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12694736	2R_12694736_SNP [dm3] 2R_16807231_SNP [dm6]	T	C	4.852e^-4	0.927	INTERGENIC
3R	19317035	3R_19317035_SNP [dm3] 3R_23491313_SNP [dm6]	C	A	4.857e^-4	0.927	INTERGENIC
3R	15061524	3R_15061524_SNP [dm3] 3R_19235802_SNP [dm6]	C	T	4.863e^-4	0.927	INTRON unc79
2R	8864258	2R_8864258_SNP [dm3] 2R_12976753_SNP [dm6]	G	C	4.864e^-4	0.927	INTRON Psc	TF binding site mE1_TFBS_HSA
3L	12092984	3L_12092984_SNP [dm3] 3L_12099884_SNP [dm6]	T	A	4.866e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26893732	3R_26893732_SNP [dm3] 3R_31068010_SNP [dm6]	A	T	4.872e^-4	0.927	INTRON Sox100B
2L	18009091	2L_18009091_SNP [dm3] 2L_18009091_SNP [dm6]	A	T	4.876e^-4	0.927	UTR_5_PRIME CG31740 DOWNSTREAM elfless & 2 others
3L	3270808	3L_3270808_SNP [dm3] 3L_3270808_SNP [dm6]	C	A	4.876e^-4	0.927	UPSTREAM CG14960 INTERGENIC
3L	8579303	3L_8579303_SNP [dm3] 3L_8586203_SNP [dm6]	G	A	4.884e^-4	0.927	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2R	3812699	2R_3812699_SNP [dm3] 2R_7925194_SNP [dm6]	T	A	4.897e^-4	0.927	UPSTREAM Kdm4A INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	24373938	3R_24373938_SNP [dm3] 3R_28548216_SNP [dm6]	G	A	4.898e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6438599	2R_6438599_SNP [dm3] 2R_10551094_SNP [dm6]	G	T	4.910e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9059258	2L_9059258_SNP [dm3] 2L_9059258_SNP [dm6]	A	C	4.913e^-4	0.927	INTRON CG31708
2R	4707666	2R_4707666_SNP [dm3] 2R_8820161_SNP [dm6]	A	C	4.922e^-4	0.927	INTRON sns
3R	25909492	3R_25909492_SNP [dm3] 3R_30083770_SNP [dm6]	G	A	4.927e^-4	0.927	INTRON sima
X	7747856	X_7747856_SNP [dm3] X_7853823_SNP [dm6]	T	C	4.928e^-4	0.927	NON_SYNONYMOUS_CODING CG10920
2L	3355127	2L_3355127_SNP [dm3] 2L_3355127_SNP [dm6]	G	C	4.929e^-4	0.927	UPSTREAM E23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	7893476	X_7893476_SNP [dm3] X_7999443_SNP [dm6]	T	C	4.943e^-4	0.927	NON_SYNONYMOUS_CODING Tbh
2L	11140775	2L_11140775_SNP [dm3] 2L_11140775_SNP [dm6]	G	C	4.950e^-4	0.927	INTRON Gyc32E
3L	12021402	3L_12021402_SNP [dm3] 3L_12028302_SNP [dm6]	T	C	4.955e^-4	0.927	DOWNSTREAM CR43994 INTRON rols
X	12382106	X_12382106_SNP [dm3] X_12488073_SNP [dm6]	A	C	4.962e^-4	0.927	INTRON Cpr11A
3R	24373739	3R_24373739_SNP [dm3] 3R_28548017_SNP [dm6]	C	G	4.965e^-4	0.927	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24651102	3R_24651102_SNP [dm3] 3R_28825380_SNP [dm6]	A	T	4.969e^-4	0.927	UTR_3_PRIME WASp DOWNSTREAM CG1647	TF binding site mE1_TFBS_chinmo
3L	12021330	3L_12021330_SNP [dm3] 3L_12028230_SNP [dm6]	C	A	4.978e^-4	0.927	DOWNSTREAM CR43994 INTRON rols
3L	12715161	3L_12715161_DEL [dm3] 3L_12722061_DEL [dm6]	GTGGG	G	4.978e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	629156	X_629156_DEL [dm3] X_735123_DEL [dm6]	CCCGC	C	4.979e^-4	0.927	INTRON sdk
3L	18387345	3L_18387345_SNP [dm3] 3L_18394245_SNP [dm6]	G	A	4.980e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3982941	2L_3982941_SNP [dm3] 2L_3982941_SNP [dm6]	C	T	4.984e^-4	0.927	INTRON fred
2R	15955885	2R_15955885_SNP [dm3] 2R_20068380_SNP [dm6]	A	T	4.999e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24528778	3R_24528778_SNP [dm3] 3R_28703056_SNP [dm6]	G	T	5.000e^-4	0.927	INTRON htt
2R	9438465	2R_9438465_SNP [dm3] 2R_13550960_SNP [dm6]	T	G	5.004e^-4	0.927	UTR_5_PRIME CG33156 UPSTREAM CG33156 INTRON CG33156
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	5.006e^-4	0.927	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
X	18916932	X_18916932_SNP [dm3] X_19022899_SNP [dm6]	A	G	5.009e^-4	0.927	INTRON CG43759
2L	17991412	2L_17991412_DEL [dm3] 2L_17991412_DEL [dm6]	GG	G	5.011e^-4	0.927	UTR_3_PRIME Prosbeta5R2
2R	14553620	2R_14553620_SNP [dm3] 2R_18666115_SNP [dm6]	A	T	5.015e^-4	0.927	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	2950607	3L_2950607_SNP [dm3] 3L_2950607_SNP [dm6]	A	G	5.017e^-4	0.927	SYNONYMOUS_CODING CG32846 INTRON Shab
2L	12839310	2L_12839310_SNP [dm3] 2L_12839310_SNP [dm6]	G	T	5.018e^-4	0.927	INTERGENIC
3R	17353769	3R_17353769_SNP [dm3] 3R_21528047_SNP [dm6]	A	G	5.019e^-4	0.927	UTR_3_PRIME CG7956 DOWNSTREAM CG7956
2R	7132890	2R_7132890_SNP [dm3] 2R_11245385_SNP [dm6]	C	T	5.020e^-4	0.927	UPSTREAM CG34225 & 1 other DOWNSTREAM CG13226 INTERGENIC
3L	17414084	3L_17414084_SNP [dm3] 3L_17420984_SNP [dm6]	A	C	5.022e^-4	0.927	DOWNSTREAM Sec3 INTRON blot	TF binding site mE1_TFBS_Trl
2L	9079822	2L_9079822_SNP [dm3] 2L_9079822_SNP [dm6]	C	G	5.026e^-4	0.927	INTERGENIC
3R	4970428	3R_4970428_DEL [dm3] 3R_9144706_DEL [dm6]	AA	A	5.026e^-4	0.927	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5709020	3R_5709020_SNP [dm3] 3R_9883298_SNP [dm6]	C	G	5.029e^-4	0.927	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15666530	X_15666530_SNP [dm3] X_15772497_SNP [dm6]	C	T	5.051e^-4	0.927	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
3L	2309444	3L_2309444_SNP [dm3] 3L_2309444_SNP [dm6]	T	G	5.058e^-4	0.927	INTERGENIC
3L	1575193	3L_1575193_SNP [dm3] 3L_1575193_SNP [dm6]	C	T	5.065e^-4	0.927	SYNONYMOUS_CODING CG12004 DOWNSTREAM CG12004
2R	10953203	2R_10953203_SNP [dm3] 2R_15065698_SNP [dm6]	A	C	5.068e^-4	0.927	INTERGENIC
3R	13269979	3R_13269979_DEL [dm3] 3R_17444257_DEL [dm6]	TAATAGAA	T	5.072e^-4	0.927	INTRON CG5873
3R	25167560	3R_25167560_SNP [dm3] 3R_29341838_SNP [dm6]	A	C	5.075e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4179481	2L_4179481_SNP [dm3] 2L_4179481_SNP [dm6]	A	C	5.077e^-4	0.927	INTERGENIC
3L	14950663	3L_14950663_SNP [dm3] 3L_14957563_SNP [dm6]	C	A	5.077e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	8606428	2L_8606428_SNP [dm3] 2L_8606428_SNP [dm6]	C	G	5.085e^-4	0.927	INTRON Sema-1a
3L	12021418	3L_12021418_SNP [dm3] 3L_12028318_SNP [dm6]	A	T	5.088e^-4	0.927	DOWNSTREAM CR43994 INTRON rols
2L	4454975	2L_4454975_SNP [dm3] 2L_4454975_SNP [dm6]	C	A	5.090e^-4	0.927	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12659939	3L_12659939_SNP [dm3] 3L_12666839_SNP [dm6]	T	A	5.092e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5116537	2L_5116537_SNP [dm3] 2L_5116537_SNP [dm6]	T	A	5.092e^-4	0.927	INTRON Msp300
3R	22227348	3R_22227348_SNP [dm3] 3R_26401626_SNP [dm6]	G	A	5.096e^-4	0.927	DOWNSTREAM ppk15 INTERGENIC
X	7883816	X_7883816_SNP [dm3] X_7989783_SNP [dm6]	A	C	5.096e^-4	0.927	INTERGENIC
2L	15762094	2L_15762094_SNP [dm3] 2L_15762094_SNP [dm6]	C	G	5.097e^-4	0.927	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12300904	3L_12300904_SNP [dm3] 3L_12307804_SNP [dm6]	T	C	5.097e^-4	0.927	INTERGENIC
3R	14444436	3R_14444436_DEL [dm3] 3R_18618714_DEL [dm6]	TT	T	5.117e^-4	0.927	INTRON qin & 1 other
2R	8579777	2R_8579777_SNP [dm3] 2R_12692272_SNP [dm6]	A	G	5.122e^-4	0.927	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16545569	2R_16545569_SNP [dm3] 2R_20658064_SNP [dm6]	A	T	5.126e^-4	0.927	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
2L	10995524	2L_10995524_SNP [dm3] 2L_10995524_SNP [dm6]	G	T	5.127e^-4	0.927	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	14916568	3L_14916568_DEL [dm3] 3L_14923468_DEL [dm6]	ATATTCC	A	5.135e^-4	0.927	INTRON DCX-EMAP
3L	15641313	3L_15641313_SNP [dm3] 3L_15648213_SNP [dm6]	C	T	5.139e^-4	0.927	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
3L	1939528	3L_1939528_SNP [dm3] 3L_1939528_SNP [dm6]	A	G	5.146e^-4	0.927	UPSTREAM CG5687 EXON CR44536
2L	8325609	2L_8325609_SNP [dm3] 2L_8325609_SNP [dm6]	C	T	5.153e^-4	0.927	UPSTREAM CG7781 INTERGENIC
3L	14477965	3L_14477965_SNP [dm3] 3L_14484865_SNP [dm6]	T	C	5.153e^-4	0.927	INTRON bbg
3L	2270794	3L_2270794_SNP [dm3] 3L_2270794_SNP [dm6]	C	A	5.153e^-4	0.927	DOWNSTREAM CG32302 INTRON yellow-g	TF binding site mE1_TFBS_HSA
2L	15763292	2L_15763292_SNP [dm3] 2L_15763292_SNP [dm6]	T	C	5.154e^-4	0.927	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11834197	X_11834197_SNP [dm3] X_11940164_SNP [dm6]	A	G	5.161e^-4	0.927	INTRON cac
2L	8301319	2L_8301319_SNP [dm3] 2L_8301319_SNP [dm6]	A	T	5.161e^-4	0.927	UPSTREAM Btk29A DOWNSTREAM wol INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13905967	3L_13905967_SNP [dm3] 3L_13912867_SNP [dm6]	G	C	5.161e^-4	0.927	INTRON Rgl
2L	638849	2L_638849_SNP [dm3] 2L_638849_SNP [dm6]	T	C	5.167e^-4	0.927	INTERGENIC
2L	7227493	2L_7227493_SNP [dm3] 2L_7227493_SNP [dm6]	C	A	5.176e^-4	0.927	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA
3L	9584442	3L_9584442_SNP [dm3] 3L_9591342_SNP [dm6]	C	T	5.182e^-4	0.927	SYNONYMOUS_CODING CG42673
2L	8238553	2L_8238553_SNP [dm3] 2L_8238553_SNP [dm6]	T	C	5.186e^-4	0.927	INTRON Pvr
2L	14748825	2L_14748825_SNP [dm3] 2L_14748825_SNP [dm6]	C	T	5.202e^-4	0.927	INTERGENIC
2R	8440284	2R_8440284_SNP [dm3] 2R_12552779_SNP [dm6]	A	T	5.208e^-4	0.927	INTRON fra
2L	5899806	2L_5899806_SNP [dm3] 2L_5899806_SNP [dm6]	C	T	5.215e^-4	0.927	DOWNSTREAM CR44579 INTERGENIC
3R	9616089	3R_9616089_SNP [dm3] 3R_13790367_SNP [dm6]	G	A	5.215e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10209979	2L_10209979_DEL [dm3] 2L_10209979_DEL [dm6]	TT	T	5.221e^-4	0.927	UTR_3_PRIME CG5727 UPSTREAM CG5731 DOWNSTREAM CR44845	TF binding site BDTNP1_TFBS_dl
2L	19925307	2L_19925307_SNP [dm3] 2L_19925307_SNP [dm6]	G	C	5.226e^-4	0.927	INTRON sick	TF binding site mE1_TFBS_chinmo
2L	18789636	2L_18789636_SNP [dm3] 2L_18789636_SNP [dm6]	T	A	5.232e^-4	0.927	INTRON ham	TF binding site mE1_TFBS_cad
3L	12932400	3L_12932400_SNP [dm3] 3L_12939300_SNP [dm6]	T	A	5.244e^-4	0.927	INTERGENIC
2R	16545568	2R_16545568_SNP [dm3] 2R_20658063_SNP [dm6]	T	A	5.249e^-4	0.927	DOWNSTREAM tRNA:CR30211 & 1 other INTRON Lrt
2R	2836126	2R_2836126_SNP [dm3] 2R_6948621_SNP [dm6]	G	T	5.256e^-4	0.927	UPSTREAM tRNA:K2:42Eb & 2 others DOWNSTREAM tRNA:K2:42Ed INTRON mim & 1 other	transposable element FlyBase
2L	8012329	2L_8012329_SNP [dm3] 2L_8012329_SNP [dm6]	C	G	5.257e^-4	0.927	UPSTREAM Tg INTRON Tg
3R	23806617	3R_23806617_SNP [dm3] 3R_27980895_SNP [dm6]	G	T	5.279e^-4	0.927	INTRON betaTub97EF
3L	11119866	3L_11119866_SNP [dm3] 3L_11126766_SNP [dm6]	G	T	5.282e^-4	0.927	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22014987	3R_22014987_SNP [dm3] 3R_26189265_SNP [dm6]	A	G	5.284e^-4	0.927	SYNONYMOUS_CODING CG34130 UPSTREAM CG6073 DOWNSTREAM CG34129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	19952050	2L_19952050_SNP [dm3] 2L_19952050_SNP [dm6]	G	A	5.284e^-4	0.927	INTRON sick	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2726548	2L_2726548_SNP [dm3] 2L_2726548_SNP [dm6]	A	G	5.304e^-4	0.927	INTRON CG31689
2L	8246578	2L_8246578_SNP [dm3] 2L_8246578_SNP [dm6]	A	G	5.306e^-4	0.927	INTRON CG8086
2R	18568047	2R_18568047_SNP [dm3] 2R_22680542_SNP [dm6]	T	C	5.312e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	3325680	3L_3325680_SNP [dm3] 3L_3325680_SNP [dm6]	G	C	5.314e^-4	0.927	START_GAINED CG11526 UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12817437	2L_12817437_SNP [dm3] 2L_12817437_SNP [dm6]	T	C	5.316e^-4	0.927	UTR_3_PRIME kek1
2R	8849071	2R_8849071_SNP [dm3] 2R_12961566_SNP [dm6]	G	C	5.323e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19027998	X_19027998_SNP [dm3] X_19133965_SNP [dm6]	T	C	5.330e^-4	0.927	DOWNSTREAM CR45711 INTERGENIC
2L	5899798	2L_5899798_MNP [dm3] 2L_5899798_MNP [dm6]	ATC	TGA	5.336e^-4	0.927	DOWNSTREAM CR44579 INTERGENIC
3L	9089248	3L_9089248_SNP [dm3] 3L_9096148_SNP [dm6]	G	A	5.342e^-4	0.927	UPSTREAM CG13315 INTERGENIC
3R	15785382	3R_15785382_SNP [dm3] 3R_19959660_SNP [dm6]	T	C	5.343e^-4	0.927	INTRON Hs6st
X	19027710	X_19027710_SNP [dm3] X_19133677_SNP [dm6]	G	A	5.353e^-4	0.927	DOWNSTREAM CR45711 INTERGENIC
3L	9581563	3L_9581563_SNP [dm3] 3L_9588463_SNP [dm6]	T	C	5.355e^-4	0.927	INTRON CG42673
2L	5449454	2L_5449454_SNP [dm3] 2L_5449454_SNP [dm6]	T	C	5.355e^-4	0.927	INTERGENIC
2L	3360576	2L_3360576_SNP [dm3] 2L_3360576_SNP [dm6]	T	C	5.361e^-4	0.927	UTR_3_PRIME CG34394
3L	7967345	3L_7967345_SNP [dm3] 3L_7974245_SNP [dm6]	T	G	5.374e^-4	0.927	INTRON CG8042	TF binding site mE1_TFBS_inv
3L	7967468	3L_7967468_SNP [dm3] 3L_7974368_SNP [dm6]	A	G	5.374e^-4	0.927	SYNONYMOUS_CODING CG8042	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	11997154	3L_11997154_SNP [dm3] 3L_12004054_SNP [dm6]	T	A	5.383e^-4	0.927	UPSTREAM CG6928 INTRON CG6928
3R	7772471	3R_7772471_SNP [dm3] 3R_11946749_SNP [dm6]	G	A	5.385e^-4	0.927	INTRON Cad87A
3L	13066503	3L_13066503_SNP [dm3] 3L_13073403_SNP [dm6]	G	C	5.390e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	7843216	2L_7843216_SNP [dm3] 2L_7843216_SNP [dm6]	T	A	5.394e^-4	0.927	INTERGENIC
3R	23491838	3R_23491838_SNP [dm3] 3R_27666116_SNP [dm6]	G	A	5.395e^-4	0.927	SYNONYMOUS_CODING unc80
2R	6701537	2R_6701537_SNP [dm3] 2R_10814032_SNP [dm6]	C	A	5.413e^-4	0.927	SPLICE_SITE_REGION CG7222 UTR_5_PRIME CG7222 UPSTREAM CG12341	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	10326226	X_10326226_SNP [dm3] X_10432193_SNP [dm6]	C	T	5.423e^-4	0.927	DOWNSTREAM CG12640 INTRON CG32683
2R	9703867	2R_9703867_SNP [dm3] 2R_13816362_SNP [dm6]	C	T	5.441e^-4	0.927	INTRON stj
3L	13279181	3L_13279181_SNP [dm3] 3L_13286081_SNP [dm6]	A	G	5.444e^-4	0.927	UPSTREAM CR45752 DOWNSTREAM CR45753 INTERGENIC
2R	16879626	2R_16879626_SNP [dm3] 2R_20992121_SNP [dm6]	G	A	5.447e^-4	0.927	UPSTREAM CG3216 DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6751508	2R_6751508_SNP [dm3] 2R_10864003_SNP [dm6]	C	T	5.451e^-4	0.927	INTRON CG30015
X	7590308	X_7590308_SNP [dm3] X_7696275_SNP [dm6]	T	C	5.458e^-4	0.927	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9059458	2L_9059458_SNP [dm3] 2L_9059458_SNP [dm6]	C	T	5.460e^-4	0.927	INTRON CG31708
2L	9347671	2L_9347671_DEL [dm3] 2L_9347671_DEL [dm6]	AACAT	A	5.470e^-4	0.927	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn

By genomic position
Variant impact
Gene name

mn_BoutNumber_Night phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results