DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.978e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03547

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.0213	0.0299

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2067 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	17176694	X_17176694_SNP [dm3] X_17282661_SNP [dm6]	C	A	4.374e^-8	0.082	SYNONYMOUS_CODING CG8664 UTR_5_PRIME CG5445	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	1003101	3L_1003101_DEL [dm3] 3L_1003101_DEL [dm6]	ATGCTCTCCGTTCATTACAG...	A	1.693e^-7	0.144	INTRON trio
2R	10214815	2R_10214815_SNP [dm3] 2R_14327310_SNP [dm6]	A	G	2.299e^-7	0.144	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15807256	2L_15807256_SNP [dm3] 2L_15807256_SNP [dm6]	C	A	6.339e^-7	0.297	EXON CR44602
2R	10214793	2R_10214793_SNP [dm3] 2R_14327288_SNP [dm6]	T	C	9.512e^-7	0.357	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6668513	2R_6668513_SNP [dm3] 2R_10781008_SNP [dm6]	C	T	2.082e^-6	0.606	INTRON CG33144
2L	3398290	2L_3398290_SNP [dm3] 2L_3398290_SNP [dm6]	G	A	2.262e^-6	0.606	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
2R	10862926	2R_10862926_SNP [dm3] 2R_14975421_SNP [dm6]	C	T	3.558e^-6	0.712	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	3.646e^-6	0.712	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	4.340e^-6	0.712	INTRON Con
3L	3720830	3L_3720830_SNP [dm3] 3L_3720830_SNP [dm6]	T	C	4.701e^-6	0.712	INTRON CG32264
X	19081800	X_19081800_SNP [dm3] X_19187767_SNP [dm6]	A	G	4.796e^-6	0.712	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10214427	2R_10214427_SNP [dm3] 2R_14326922_SNP [dm6]	T	C	5.064e^-6	0.712	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
3R	9909155	3R_9909155_SNP [dm3] 3R_14083433_SNP [dm6]	C	A	5.318e^-6	0.712	INTRON foxo
2L	11072204	2L_11072204_SNP [dm3] 2L_11072204_SNP [dm6]	A	G	6.675e^-6	0.737	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16482160	2R_16482160_SNP [dm3] 2R_20594655_SNP [dm6]	G	A	7.152e^-6	0.737	INTRON bl
2L	17394834	2L_17394834_INS [dm3] 2L_17394834_INS [dm6]	G	GCATAGGTACTTTAGTTATA...	8.426e^-6	0.737	INTRON CLIP-190
2R	19034513	2R_19034513_SNP [dm3] 2R_23146990_SNP [dm6]	A	C	8.426e^-6	0.737	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	17394794	2L_17394794_DEL [dm3] 2L_17394794_DEL [dm6]	ACACGTGA	A	8.624e^-6	0.737	INTRON CLIP-190
3L	1003129	3L_1003129_SNP [dm3] 3L_1003129_SNP [dm6]	G	A	9.040e^-6	0.737	INTRON trio
2L	4915811	2L_4915811_SNP [dm3] 2L_4915811_SNP [dm6]	G	A	9.195e^-6	0.737	UPSTREAM hoe1 INTRON hoe1
2R	10215901	2R_10215901_SNP [dm3] 2R_14328396_SNP [dm6]	C	T	9.477e^-6	0.737	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8975322	3R_8975322_SNP [dm3] 3R_13149600_SNP [dm6]	A	C	9.687e^-6	0.737	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	3398368	2L_3398368_SNP [dm3] 2L_3398368_SNP [dm6]	G	A	1.010e^-5	0.737	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
2R	10026039	2R_10026039_SNP [dm3] 2R_14138534_SNP [dm6]	G	T	1.020e^-5	0.737	INTRON Prosap
3R	19772576	3R_19772576_SNP [dm3] 3R_23946854_SNP [dm6]	G	T	1.066e^-5	0.737	UTR_5_PRIME CG12268 INTRON CG12268
2L	17387290	2L_17387290_SNP [dm3] 2L_17387290_SNP [dm6]	T	G	1.088e^-5	0.737	INTRON CLIP-190
X	21905879	X_21905879_SNP [dm3] X_22504043_SNP [dm6]	T	C	1.200e^-5	0.737	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
3R	23388847	3R_23388847_SNP [dm3] 3R_27563125_SNP [dm6]	T	G	1.361e^-5	0.737	UTR_3_PRIME wdb
2R	8976468	2R_8976468_SNP [dm3] 2R_13088963_SNP [dm6]	G	A	1.385e^-5	0.737	INTERGENIC
X	17175125	X_17175125_SNP [dm3] X_17281092_SNP [dm6]	A	G	1.389e^-5	0.737	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
3L	11879465	3L_11879465_SNP [dm3] 3L_11886365_SNP [dm6]	G	T	1.447e^-5	0.737	DOWNSTREAM CG5897 INTRON CG44837
2R	10217588	2R_10217588_SNP [dm3] 2R_14330083_SNP [dm6]	C	A	1.492e^-5	0.737	INTRON Shroom
2R	10214887	2R_10214887_SNP [dm3] 2R_14327382_SNP [dm6]	C	T	1.494e^-5	0.737	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16051122	X_16051122_SNP [dm3] X_16157089_SNP [dm6]	T	G	1.512e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10023090	2R_10023090_DEL [dm3] 2R_14135585_DEL [dm6]	CC	C	1.549e^-5	0.737	INTRON Prosap
X	17176035	X_17176035_SNP [dm3] X_17282002_SNP [dm6]	A	C	1.716e^-5	0.737	NON_SYNONYMOUS_CODING CG8664 UPSTREAM CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5655544	3R_5655544_INS [dm3] 3R_9829822_INS [dm6]	T	TTGCTTT	1.733e^-5	0.737	INTRON Teh1
2R	14904637	2R_14904637_SNP [dm3] 2R_19017132_SNP [dm6]	T	A	1.768e^-5	0.737	INTERGENIC
X	19081850	X_19081850_SNP [dm3] X_19187817_SNP [dm6]	G	A	1.773e^-5	0.737	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8364009	3R_8364009_SNP [dm3] 3R_12538287_SNP [dm6]	T	G	1.785e^-5	0.737	INTRON Octbeta3R
3R	5654692	3R_5654692_SNP [dm3] 3R_9828970_SNP [dm6]	T	C	1.796e^-5	0.737	INTRON Teh1
2R	10029303	2R_10029303_SNP [dm3] 2R_14141798_SNP [dm6]	C	G	1.803e^-5	0.737	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10214889	2R_10214889_SNP [dm3] 2R_14327384_SNP [dm6]	T	A	1.819e^-5	0.737	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9114343	X_9114343_SNP [dm3] X_9220310_SNP [dm6]	G	A	1.843e^-5	0.737	INTRON t	TF binding site mE1_TFBS_cad
3R	8958396	3R_8958396_SNP [dm3] 3R_13132674_SNP [dm6]	C	G	1.872e^-5	0.737	UTR_5_PRIME 2mit UPSTREAM 2mit INTRON timeout EXON CR45109
2L	4915857	2L_4915857_SNP [dm3] 2L_4915857_SNP [dm6]	T	G	1.886e^-5	0.737	UPSTREAM hoe1 INTRON hoe1
X	2610896	X_2610896_SNP [dm3] X_2716863_SNP [dm6]	T	A	1.941e^-5	0.737	NON_SYNONYMOUS_CODING CG2694 DOWNSTREAM CG2701	TF binding site mE1_TFBS_chinmo
2L	7342432	2L_7342432_SNP [dm3] 2L_7342432_SNP [dm6]	T	A	1.991e^-5	0.737	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10029195	2R_10029195_SNP [dm3] 2R_14141690_SNP [dm6]	A	G	2.003e^-5	0.737	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17390180	2L_17390180_SNP [dm3] 2L_17390180_SNP [dm6]	G	C	2.043e^-5	0.737	INTRON CLIP-190
2L	17390182	2L_17390182_SNP [dm3] 2L_17390182_SNP [dm6]	C	T	2.043e^-5	0.737	INTRON CLIP-190
2R	10214867	2R_10214867_SNP [dm3] 2R_14327362_SNP [dm6]	A	T	2.204e^-5	0.78	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7858776	3L_7858776_SNP [dm3] 3L_7865676_SNP [dm6]	T	A	2.257e^-5	0.784	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17953839	2R_17953839_SNP [dm3] 2R_22066334_SNP [dm6]	C	T	2.308e^-5	0.787	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_twi
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	2.406e^-5	0.79	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	14043962	3R_14043962_SNP [dm3] 3R_18218240_SNP [dm6]	C	T	2.493e^-5	0.79	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2L	17605565	2L_17605565_SNP [dm3] 2L_17605565_SNP [dm6]	C	T	2.514e^-5	0.79	DOWNSTREAM CR44412 INTERGENIC
2L	11953674	2L_11953674_SNP [dm3] 2L_11953674_SNP [dm6]	A	T	2.519e^-5	0.79	UPSTREAM bft EXON CR43314
3L	1002834	3L_1002834_SNP [dm3] 3L_1002834_SNP [dm6]	C	T	2.558e^-5	0.79	INTRON trio
X	2609159	X_2609159_SNP [dm3] X_2715126_SNP [dm6]	A	T	2.612e^-5	0.79	SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_ttk
X	8184377	X_8184377_SNP [dm3] X_8290344_SNP [dm6]	C	T	2.670e^-5	0.79	INTRON nAChRalpha3
3R	8966061	3R_8966061_SNP [dm3] 3R_13140339_SNP [dm6]	C	T	2.710e^-5	0.79	INTRON timeout & 2 others
X	18369693	X_18369693_SNP [dm3] X_18475660_SNP [dm6]	C	A	2.714e^-5	0.79	INTRON CG32547
3R	26706243	3R_26706243_DEL [dm3] 3R_30880521_DEL [dm6]	AGTTTGGGG	A	2.739e^-5	0.79	INTRON CG12071
3L	439457	3L_439457_SNP [dm3] 3L_439457_SNP [dm6]	C	G	2.797e^-5	0.795	INTRON klar
X	4358333	X_4358333_SNP [dm3] X_4464300_SNP [dm6]	T	C	2.855e^-5	0.799	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13701765	2L_13701765_SNP [dm3] 2L_13701765_SNP [dm6]	A	C	2.942e^-5	0.811	INTRON CG31814
X	17177495	X_17177495_SNP [dm3] X_17283462_SNP [dm6]	A	G	3.023e^-5	0.822	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
3R	8934699	3R_8934699_SNP [dm3] 3R_13108977_SNP [dm6]	T	A	3.090e^-5	0.822	INTRON timeout
X	16010249	X_16010249_SNP [dm3] X_16116216_SNP [dm6]	T	G	3.154e^-5	0.822	INTERGENIC
X	17901717	X_17901717_SNP [dm3] X_18007684_SNP [dm6]	T	C	3.156e^-5	0.822	UPSTREAM CG12672 INTRON Sh
3L	10784964	3L_10784964_SNP [dm3] 3L_10791864_SNP [dm6]	C	T	3.202e^-5	0.823	INTERGENIC
3R	14043944	3R_14043944_SNP [dm3] 3R_18218222_SNP [dm6]	T	A	3.323e^-5	0.834	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
X	16051170	X_16051170_SNP [dm3] X_16157137_SNP [dm6]	C	T	3.376e^-5	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10719281	2R_10719281_SNP [dm3] 2R_14831776_SNP [dm6]	C	T	3.380e^-5	0.834	INTERGENIC
X	18923821	X_18923821_SNP [dm3] X_19029788_SNP [dm6]	C	T	3.562e^-5	0.839	INTERGENIC
3L	1003128	3L_1003128_SNP [dm3] 3L_1003128_SNP [dm6]	T	C	3.709e^-5	0.839	INTRON trio
3R	8965839	3R_8965839_SNP [dm3] 3R_13140117_SNP [dm6]	C	T	3.710e^-5	0.839	INTRON timeout & 2 others
X	17194444	X_17194444_SNP [dm3] X_17300411_SNP [dm6]	G	T	3.733e^-5	0.839	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	17431714	X_17431714_SNP [dm3] X_17537681_SNP [dm6]	G	C	3.802e^-5	0.839	INTRON CG43658
3R	5149777	3R_5149777_SNP [dm3] 3R_9324055_SNP [dm6]	G	A	3.824e^-5	0.839	INTRON CG8861
3R	1141045	3R_1141045_SNP [dm3] 3R_5315323_SNP [dm6]	T	A	3.839e^-5	0.839	INTRON mtd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10413988	2R_10413988_SNP [dm3] 2R_14526483_SNP [dm6]	T	A	3.881e^-5	0.839	UTR_5_PRIME ttv UPSTREAM ttv	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3501691	3L_3501691_SNP [dm3] 3L_3501691_SNP [dm6]	T	C	3.884e^-5	0.839	INTRON CG42324
X	18642655	X_18642655_SNP [dm3] X_18748622_SNP [dm6]	C	T	3.888e^-5	0.839	UPSTREAM CG12609 INTERGENIC
X	19081619	X_19081619_SNP [dm3] X_19187586_SNP [dm6]	G	A	4.002e^-5	0.839	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5654877	3R_5654877_SNP [dm3] 3R_9829155_SNP [dm6]	G	A	4.081e^-5	0.839	INTRON Teh1
2L	18909112	2L_18909112_SNP [dm3] 2L_18909112_SNP [dm6]	T	C	4.082e^-5	0.839	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	9670610	3R_9670610_SNP [dm3] 3R_13844888_SNP [dm6]	C	A	4.085e^-5	0.839	INTERGENIC
2L	17297663	2L_17297663_DEL [dm3] 2L_17297663_DEL [dm6]	GATTTTTAGGGCACTTCATT...	AATCTGTCCATCGTATGA...	4.250e^-5	0.839	INTERGENIC
2L	7088883	2L_7088883_SNP [dm3] 2L_7088883_SNP [dm6]	C	T	4.400e^-5	0.839	INTERGENIC
3L	5133674	3L_5133674_SNP [dm3] 3L_5140574_SNP [dm6]	A	G	4.448e^-5	0.839	SYNONYMOUS_CODING CG10672 DOWNSTREAM CHMP2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10030838	2R_10030838_SNP [dm3] 2R_14143333_SNP [dm6]	G	A	4.477e^-5	0.839	INTERGENIC	TF binding site mE1_TFBS_bab1
X	16011668	X_16011668_SNP [dm3] X_16117635_SNP [dm6]	G	A	4.501e^-5	0.839	DOWNSTREAM disco-r INTERGENIC
3R	10345795	3R_10345795_SNP [dm3] 3R_14520073_SNP [dm6]	G	T	4.570e^-5	0.839	UPSTREAM Cyp313a1 INTRON Pde6
2R	10607572	2R_10607572_SNP [dm3] 2R_14720067_SNP [dm6]	T	A	4.588e^-5	0.839	INTERGENIC
2L	12060314	2L_12060314_SNP [dm3] 2L_12060314_SNP [dm6]	A	G	4.593e^-5	0.839	SYNONYMOUS_CODING Rab3-GAP
2R	8976471	2R_8976471_SNP [dm3] 2R_13088966_SNP [dm6]	G	A	4.604e^-5	0.839	INTERGENIC
2L	17605564	2L_17605564_SNP [dm3] 2L_17605564_SNP [dm6]	C	T	4.611e^-5	0.839	DOWNSTREAM CR44412 INTERGENIC
3L	16462035	3L_16462035_SNP [dm3] 3L_16468935_SNP [dm6]	T	C	4.639e^-5	0.839	INTRON CG33158	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17994328	X_17994328_SNP [dm3] X_18100295_SNP [dm6]	A	G	4.696e^-5	0.839	UPSTREAM CG7192 INTRON CG7192
X	8138969	X_8138969_SNP [dm3] X_8244936_SNP [dm6]	T	C	4.710e^-5	0.839	UPSTREAM sni INTRON Trxr-1	TF binding site mE1_TFBS_cnc
2R	9344914	2R_9344914_SNP [dm3] 2R_13457409_SNP [dm6]	T	C	4.744e^-5	0.839	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9942607	3R_9942607_SNP [dm3] 3R_14116885_SNP [dm6]	A	G	4.786e^-5	0.839	INTRON Kif19A
2R	2855654	2R_2855654_SNP [dm3] 2R_6968149_SNP [dm6]	G	C	5.024e^-5	0.839	INTRON mim & 1 other
3R	9943073	3R_9943073_SNP [dm3] 3R_14117351_SNP [dm6]	C	G	5.035e^-5	0.839	INTRON Kif19A
2R	10025964	2R_10025964_SNP [dm3] 2R_14138459_SNP [dm6]	A	G	5.134e^-5	0.839	INTRON Prosap
3R	24036832	3R_24036832_SNP [dm3] 3R_28211110_SNP [dm6]	T	C	5.205e^-5	0.839	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10214905	2R_10214905_SNP [dm3] 2R_14327400_SNP [dm6]	G	A	5.272e^-5	0.839	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14324885	3L_14324885_SNP [dm3] 3L_14331785_SNP [dm6]	A	T	5.287e^-5	0.839	INTRON fz
X	17901718	X_17901718_SNP [dm3] X_18007685_SNP [dm6]	C	T	5.293e^-5	0.839	UPSTREAM CG12672 INTRON Sh
3L	6538549	3L_6538549_SNP [dm3] 3L_6545449_SNP [dm6]	A	G	5.336e^-5	0.839	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1911462	2R_1911462_SNP [dm3] 2R_6023957_SNP [dm6]	C	T	5.360e^-5	0.839	UPSTREAM dream INTERGENIC	transposable element FlyBase
2L	2613473	2L_2613473_SNP [dm3] 2L_2613473_SNP [dm6]	T	C	5.400e^-5	0.839	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17394936	2L_17394936_SNP [dm3] 2L_17394936_SNP [dm6]	T	A	5.419e^-5	0.839	INTRON CLIP-190
3L	11170913	3L_11170913_SNP [dm3] 3L_11177813_SNP [dm6]	G	A	5.486e^-5	0.839	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
2L	8651008	2L_8651008_DEL [dm3] 2L_8651008_DEL [dm6]	ATA	A	5.488e^-5	0.839	INTRON Sema-1a
2L	17605562	2L_17605562_SNP [dm3] 2L_17605562_SNP [dm6]	G	A	5.495e^-5	0.839	DOWNSTREAM CR44412 INTERGENIC
3R	8965714	3R_8965714_SNP [dm3] 3R_13139992_SNP [dm6]	C	T	5.502e^-5	0.839	INTRON timeout & 2 others
2L	12384098	2L_12384098_SNP [dm3] 2L_12384098_SNP [dm6]	A	G	5.517e^-5	0.839	INTRON bru-2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17175631	X_17175631_SNP [dm3] X_17281598_SNP [dm6]	G	A	5.549e^-5	0.839	UTR_3_PRIME CG8664 UPSTREAM CG5445 DOWNSTREAM CG8664 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19081636	X_19081636_SNP [dm3] X_19187603_SNP [dm6]	G	A	5.577e^-5	0.839	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14736364	2R_14736364_SNP [dm3] 2R_18848859_SNP [dm6]	T	C	5.628e^-5	0.839	SYNONYMOUS_CODING CG15100	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15973105	3R_15973105_SNP [dm3] 3R_20147383_SNP [dm6]	G	A	5.661e^-5	0.839	INTERGENIC
2R	10217953	2R_10217953_SNP [dm3] 2R_14330448_SNP [dm6]	A	T	5.661e^-5	0.839	INTRON Shroom
2L	21700077	2L_21700077_SNP [dm3] 2L_21700077_SNP [dm6]	A	C	5.683e^-5	0.839	INTRON CG31619
3L	12527759	3L_12527759_SNP [dm3] 3L_12534659_SNP [dm6]	C	G	5.740e^-5	0.84	NON_SYNONYMOUS_CODING CG10688 UPSTREAM Tsf2 DOWNSTREAM CG34242 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8966242	2R_8966242_SNP [dm3] 2R_13078737_SNP [dm6]	A	G	5.776e^-5	0.84	INTRON Drl-2
3R	22855114	3R_22855114_SNP [dm3] 3R_27029392_SNP [dm6]	C	T	5.907e^-5	0.842	INTRON RYa-R
3R	8935138	3R_8935138_SNP [dm3] 3R_13109416_SNP [dm6]	C	T	6.096e^-5	0.842	INTRON timeout
X	16946904	X_16946904_SNP [dm3] X_17052871_SNP [dm6]	G	T	6.165e^-5	0.842	INTRON CG45002
2R	10862808	2R_10862808_SNP [dm3] 2R_14975303_SNP [dm6]	C	T	6.268e^-5	0.842	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8975342	3R_8975342_SNP [dm3] 3R_13149620_SNP [dm6]	G	A	6.423e^-5	0.842	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2R	9161837	2R_9161837_SNP [dm3] 2R_13274332_SNP [dm6]	A	G	6.590e^-5	0.842	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3R	14033302	3R_14033302_SNP [dm3] 3R_18207580_SNP [dm6]	T	G	6.614e^-5	0.842	INTRON CG7985
3R	9942457	3R_9942457_SNP [dm3] 3R_14116735_SNP [dm6]	T	G	6.674e^-5	0.842	INTRON Kif19A
2L	3407678	2L_3407678_SNP [dm3] 2L_3407678_SNP [dm6]	G	A	6.788e^-5	0.842	SYNONYMOUS_CODING pgant2
2L	9089164	2L_9089164_SNP [dm3] 2L_9089164_SNP [dm6]	C	T	6.865e^-5	0.842	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9626344	3L_9626344_SNP [dm3] 3L_9633244_SNP [dm6]	T	C	6.917e^-5	0.842	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6530203	X_6530203_SNP [dm3] X_6636170_SNP [dm6]	G	A	6.959e^-5	0.842	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
3R	26114643	3R_26114643_INS [dm3] 3R_30288921_INS [dm6]	A	AATAA	6.967e^-5	0.842	INTRON hdc
3L	9276949	3L_9276949_SNP [dm3] 3L_9283849_SNP [dm6]	C	G	6.974e^-5	0.842	INTRON GluRIB
3L	7432933	3L_7432933_SNP [dm3] 3L_7439833_SNP [dm6]	G	A	7.014e^-5	0.842	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2R	8275712	2R_8275712_SNP [dm3] 2R_12388207_SNP [dm6]	G	T	7.090e^-5	0.842	INTRON Cpr49Ac
3R	9951312	3R_9951312_SNP [dm3] 3R_14125590_SNP [dm6]	A	G	7.132e^-5	0.842	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7442281	2R_7442281_SNP [dm3] 2R_11554776_SNP [dm6]	T	C	7.141e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	10215795	2R_10215795_SNP [dm3] 2R_14328290_SNP [dm6]	A	T	7.168e^-5	0.842	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17605568	2L_17605568_INS [dm3] 2L_17605568_INS [dm6]	T	TTTTTTGT	7.184e^-5	0.842	DOWNSTREAM CR44412 INTERGENIC
X	3172992	X_3172992_SNP [dm3] X_3278959_SNP [dm6]	C	A	7.192e^-5	0.842	INTRON dnc
2R	1920862	2R_1920862_SNP [dm3] 2R_6033357_SNP [dm6]	C	G	7.192e^-5	0.842	INTRON SCAP	TF binding site BDTNP1_TFBS_dl
3L	7859004	3L_7859004_SNP [dm3] 3L_7865904_SNP [dm6]	C	T	7.386e^-5	0.842	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	8964822	2R_8964822_SNP [dm3] 2R_13077317_SNP [dm6]	C	G	7.402e^-5	0.842	INTRON Drl-2	TF binding site mE1_TFBS_cad
3R	12704023	3R_12704023_SNP [dm3] 3R_16878301_SNP [dm6]	G	T	7.407e^-5	0.842	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15770460	2L_15770460_SNP [dm3] 2L_15770460_SNP [dm6]	T	C	7.425e^-5	0.842	SYNONYMOUS_CODING Ku80 DOWNSTREAM CG31826
3L	7858768	3L_7858768_SNP [dm3] 3L_7865668_SNP [dm6]	A	C	7.450e^-5	0.842	INTRON Pdp1	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	10695005	3L_10695005_SNP [dm3] 3L_10701905_SNP [dm6]	T	A	7.470e^-5	0.842	INTERGENIC
X	16900493	X_16900493_SNP [dm3] X_17006460_SNP [dm6]	C	T	7.500e^-5	0.842	INTRON CG45002
3R	18265429	3R_18265429_SNP [dm3] 3R_22439707_SNP [dm6]	T	G	7.502e^-5	0.842	DOWNSTREAM CG12499 INTERGENIC
3R	8379057	3R_8379057_SNP [dm3] 3R_12553335_SNP [dm6]	C	A	7.526e^-5	0.842	INTRON Octbeta2R
3L	12503596	3L_12503596_SNP [dm3] 3L_12510496_SNP [dm6]	C	T	7.534e^-5	0.842	SYNONYMOUS_CODING sti
3L	11879476	3L_11879476_SNP [dm3] 3L_11886376_SNP [dm6]	A	T	7.563e^-5	0.842	DOWNSTREAM CG5897 INTRON CG44837
3R	19772607	3R_19772607_SNP [dm3] 3R_23946885_SNP [dm6]	A	C	7.580e^-5	0.842	INTRON CG12268
3L	6538327	3L_6538327_SNP [dm3] 3L_6545227_SNP [dm6]	G	A	7.595e^-5	0.842	SYNONYMOUS_CODING sfl	TF binding site mE1_TFBS_sens
3L	10745229	3L_10745229_SNP [dm3] 3L_10752129_SNP [dm6]	G	A	7.629e^-5	0.842	INTERGENIC
3R	8363784	3R_8363784_DEL [dm3] 3R_12538062_DEL [dm6]	AGGGGTTTAACTA...	A	7.665e^-5	0.842	INTRON Octbeta3R
2L	17386039	2L_17386039_SNP [dm3] 2L_17386039_SNP [dm6]	G	A	7.676e^-5	0.842	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12704021	3R_12704021_SNP [dm3] 3R_16878299_SNP [dm6]	A	T	7.720e^-5	0.842	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18412383	X_18412383_SNP [dm3] X_18518350_SNP [dm6]	A	G	7.830e^-5	0.842	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
3L	18570045	3L_18570045_SNP [dm3] 3L_18576945_SNP [dm6]	C	G	7.838e^-5	0.842	DOWNSTREAM AstC-R1 INTERGENIC
2L	2544176	2L_2544176_SNP [dm3] 2L_2544176_SNP [dm6]	G	A	7.873e^-5	0.842	INTERGENIC
X	8138926	X_8138926_SNP [dm3] X_8244893_SNP [dm6]	C	G	7.938e^-5	0.842	UPSTREAM sni INTRON Trxr-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
X	3449529	X_3449529_SNP [dm3] X_3555496_SNP [dm6]	A	C	7.946e^-5	0.842	INTRON CG32791
3R	8519144	3R_8519144_SNP [dm3] 3R_12693422_SNP [dm6]	C	A	7.955e^-5	0.842	SYNONYMOUS_CODING Arp1 UPSTREAM CG31347 DOWNSTREAM CG14391	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8975496	3R_8975496_SNP [dm3] 3R_13149774_SNP [dm6]	C	T	7.991e^-5	0.842	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2R	6392974	2R_6392974_SNP [dm3] 2R_10505469_SNP [dm6]	T	A	8.025e^-5	0.842	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13616970	2L_13616970_SNP [dm3] 2L_13616970_SNP [dm6]	C	T	8.318e^-5	0.842	INTRON kuz
2L	21918567	2L_21918567_SNP [dm3] 2L_21918567_SNP [dm6]	C	T	8.374e^-5	0.842	INTRON CG11634
3R	8363754	3R_8363754_SNP [dm3] 3R_12538032_SNP [dm6]	T	A	8.515e^-5	0.842	INTRON Octbeta3R
X	16010255	X_16010255_SNP [dm3] X_16116222_SNP [dm6]	C	T	8.536e^-5	0.842	INTERGENIC	transposable element FlyBase
X	16599214	X_16599214_SNP [dm3] X_16705181_SNP [dm6]	A	T	8.575e^-5	0.842	UTR_3_PRIME CG4653 DOWNSTREAM CG9672 INTRON CG4678
X	8138940	X_8138940_SNP [dm3] X_8244907_SNP [dm6]	C	T	8.583e^-5	0.842	UPSTREAM sni INTRON Trxr-1	TF binding site mE1_TFBS_cnc
3R	8967862	3R_8967862_SNP [dm3] 3R_13142140_SNP [dm6]	G	A	8.690e^-5	0.842	INTRON timeout & 2 others
X	2609393	X_2609393_SNP [dm3] X_2715360_SNP [dm6]	C	T	8.703e^-5	0.842	SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_ttk
2L	14550460	2L_14550460_SNP [dm3] 2L_14550460_SNP [dm6]	C	A	8.746e^-5	0.842	EXON CR44853
3R	9421994	3R_9421994_SNP [dm3] 3R_13596272_SNP [dm6]	G	C	8.775e^-5	0.842	INTERGENIC
3R	10353579	3R_10353579_SNP [dm3] 3R_14527857_SNP [dm6]	G	A	8.808e^-5	0.842	INTRON Pde6
2L	11951357	2L_11951357_SNP [dm3] 2L_11951357_SNP [dm6]	G	A	8.810e^-5	0.842	DOWNSTREAM CR43314 INTERGENIC
2R	10214496	2R_10214496_SNP [dm3] 2R_14326991_SNP [dm6]	C	T	8.814e^-5	0.842	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
2R	18715323	2R_18715323_SNP [dm3] 2R_22827800_SNP [dm6]	A	C	8.816e^-5	0.842	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
3L	7432919	3L_7432919_SNP [dm3] 3L_7439819_SNP [dm6]	A	T	8.891e^-5	0.842	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2R	17988231	2R_17988231_SNP [dm3] 2R_22100726_SNP [dm6]	G	T	8.907e^-5	0.842	INTERGENIC
2L	4915985	2L_4915985_SNP [dm3] 2L_4915985_SNP [dm6]	C	T	8.930e^-5	0.842	UPSTREAM hoe1 INTRON hoe1
2L	10039855	2L_10039855_SNP [dm3] 2L_10039855_SNP [dm6]	T	C	9.017e^-5	0.842	DOWNSTREAM obst-B INTERGENIC
3R	23051188	3R_23051188_SNP [dm3] 3R_27225466_SNP [dm6]	G	C	9.047e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	16107462	2L_16107462_SNP [dm3] 2L_16107462_SNP [dm6]	A	G	9.122e^-5	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7432941	3L_7432941_SNP [dm3] 3L_7439841_SNP [dm6]	T	A	9.250e^-5	0.842	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458	transposable element FlyBase
2R	10214689	2R_10214689_SNP [dm3] 2R_14327184_SNP [dm6]	G	A	9.277e^-5	0.842	INTRON Shroom	TF binding site mE1_TFBS_cad
2R	9161900	2R_9161900_SNP [dm3] 2R_13274395_SNP [dm6]	G	T	9.407e^-5	0.842	INTRON Dh31-R
2R	12016238	2R_12016238_SNP [dm3] 2R_16128733_SNP [dm6]	C	A	9.409e^-5	0.842	INTRON spin
3L	13835322	3L_13835322_SNP [dm3] 3L_13842222_SNP [dm6]	A	G	9.413e^-5	0.842	UTR_5_PRIME CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
3L	5574933	3L_5574933_SNP [dm3] 3L_5581833_SNP [dm6]	C	T	9.460e^-5	0.842	INTERGENIC
3R	19772608	3R_19772608_SNP [dm3] 3R_23946886_SNP [dm6]	G	A	9.510e^-5	0.842	INTRON CG12268
3R	7673870	3R_7673870_SNP [dm3] 3R_11848148_SNP [dm6]	C	T	9.673e^-5	0.842	INTRON CG6959	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17181458	X_17181458_SNP [dm3] X_17287425_SNP [dm6]	C	G	9.684e^-5	0.842	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
2R	10214942	2R_10214942_SNP [dm3] 2R_14327437_SNP [dm6]	A	C	9.705e^-5	0.842	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2447598	X_2447598_SNP [dm3] X_2553565_SNP [dm6]	T	A	9.754e^-5	0.842	UPSTREAM Pdfr INTRON Pdfr
2R	8965938	2R_8965938_SNP [dm3] 2R_13078433_SNP [dm6]	A	C	9.768e^-5	0.842	INTRON Drl-2
2R	19797719	2R_19797719_SNP [dm3] 2R_23910196_SNP [dm6]	A	T	9.818e^-5	0.842	UPSTREAM kcc INTRON kcc
X	11734907	X_11734907_SNP [dm3] X_11840874_SNP [dm6]	T	G	9.955e^-5	0.842	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2L	16416970	2L_16416970_SNP [dm3] 2L_16416970_SNP [dm6]	A	G	1.001e^-4	0.842	DOWNSTREAM snoRNA:Me28S-A2958 INTRON CG5888	TF binding site mE1_TFBS_inv
3L	5813049	3L_5813049_SNP [dm3] 3L_5819949_SNP [dm6]	A	G	1.002e^-4	0.842	INTRON vn
3R	10349795	3R_10349795_SNP [dm3] 3R_14524073_SNP [dm6]	C	T	1.010e^-4	0.842	INTRON Pde6
2R	9161898	2R_9161898_SNP [dm3] 2R_13274393_SNP [dm6]	G	A	1.014e^-4	0.842	INTRON Dh31-R
3R	19032923	3R_19032923_SNP [dm3] 3R_23207201_SNP [dm6]	A	G	1.017e^-4	0.842	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8975278	3R_8975278_SNP [dm3] 3R_13149556_SNP [dm6]	A	G	1.018e^-4	0.842	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
X	17181497	X_17181497_SNP [dm3] X_17287464_SNP [dm6]	A	G	1.022e^-4	0.842	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
3R	3902807	3R_3902807_SNP [dm3] 3R_8077085_SNP [dm6]	G	T	1.027e^-4	0.842	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2692438	3L_2692438_SNP [dm3] 3L_2692438_SNP [dm6]	T	C	1.038e^-4	0.842	INTRON Fife
3R	8965659	3R_8965659_SNP [dm3] 3R_13139937_SNP [dm6]	G	A	1.039e^-4	0.842	INTRON timeout & 2 others
2R	19978833	2R_19978833_SNP [dm3] 2R_24091310_SNP [dm6]	G	A	1.042e^-4	0.842	SYNONYMOUS_CODING snama DOWNSTREAM gek
3R	9032625	3R_9032625_SNP [dm3] 3R_13206903_SNP [dm6]	T	C	1.055e^-4	0.842	INTERGENIC
3R	8958954	3R_8958954_SNP [dm3] 3R_13133232_SNP [dm6]	T	A	1.058e^-4	0.842	UPSTREAM 2mit INTRON timeout & 2 others
3R	19772613	3R_19772613_DEL [dm3] 3R_23946891_DEL [dm6]	TT	T	1.060e^-4	0.842	INTRON CG12268
2L	16454957	2L_16454957_SNP [dm3] 2L_16454957_SNP [dm6]	C	T	1.065e^-4	0.842	UTR_3_PRIME Idgf3 DOWNSTREAM Idgf3	regulatory region REDfly_CRMs
2R	13129702	2R_13129702_SNP [dm3] 2R_17242197_SNP [dm6]	T	C	1.071e^-4	0.842	INTRON mbl
3L	10710355	3L_10710355_SNP [dm3] 3L_10717255_SNP [dm6]	C	T	1.071e^-4	0.842	INTERGENIC
X	17174233	X_17174233_SNP [dm3] X_17280200_SNP [dm6]	C	T	1.078e^-4	0.842	NON_SYNONYMOUS_CODING f DOWNSTREAM CG8664
2R	10011562	2R_10011562_SNP [dm3] 2R_14124057_SNP [dm6]	G	T	1.080e^-4	0.842	INTRON Prosap
2R	6669197	2R_6669197_SNP [dm3] 2R_10781692_SNP [dm6]	C	A	1.082e^-4	0.842	INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17654099	3R_17654099_SNP [dm3] 3R_21828377_SNP [dm6]	T	G	1.084e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	8946785	3R_8946785_SNP [dm3] 3R_13121063_SNP [dm6]	C	T	1.090e^-4	0.842	DOWNSTREAM 2mit INTRON timeout
2R	11381135	2R_11381135_SNP [dm3] 2R_15493630_SNP [dm6]	G	A	1.090e^-4	0.842	INTRON CG12964
3L	7821223	3L_7821223_SNP [dm3] 3L_7828123_SNP [dm6]	C	A	1.093e^-4	0.842	UPSTREAM Pdp1 INTRON Pdp1
X	17901055	X_17901055_SNP [dm3] X_18007022_SNP [dm6]	A	G	1.097e^-4	0.842	SYNONYMOUS_CODING CG12672 INTRON Sh
2L	1837303	2L_1837303_SNP [dm3] 2L_1837303_SNP [dm6]	T	A	1.108e^-4	0.842	UTR_5_PRIME wry INTRON wry
3L	9799853	3L_9799853_SNP [dm3] 3L_9806753_SNP [dm6]	T	A	1.112e^-4	0.842	INTRON CG32052	TF binding site BDTNP1_TFBS_twi
3R	9899571	3R_9899571_SNP [dm3] 3R_14073849_SNP [dm6]	G	A	1.117e^-4	0.842	INTRON foxo
3L	3501693	3L_3501693_SNP [dm3] 3L_3501693_SNP [dm6]	G	T	1.119e^-4	0.842	INTRON CG42324
2R	18670986	2R_18670986_SNP [dm3] 2R_22783481_SNP [dm6]	C	T	1.122e^-4	0.842	UPSTREAM CG30270 INTRON CG42260
2R	6596981	2R_6596981_SNP [dm3] 2R_10709476_SNP [dm6]	A	T	1.132e^-4	0.842	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
X	3342685	X_3342685_SNP [dm3] X_3448652_SNP [dm6]	C	T	1.146e^-4	0.842	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_prd
3R	8937834	3R_8937834_DEL [dm3] 3R_13112112_DEL [dm6]	TT	T	1.150e^-4	0.842	INTRON timeout
X	18834899	X_18834899_SNP [dm3] X_18940866_SNP [dm6]	G	T	1.178e^-4	0.842	INTRON CG43759
3R	8959393	3R_8959393_SNP [dm3] 3R_13133671_SNP [dm6]	C	G	1.194e^-4	0.842	INTRON timeout & 2 others
2L	20607088	2L_20607088_SNP [dm3] 2L_20607088_SNP [dm6]	A	T	1.203e^-4	0.842	DOWNSTREAM CR43608 INTRON CR44909 EXON CR43608
2L	4916006	2L_4916006_SNP [dm3] 2L_4916006_SNP [dm6]	C	A	1.203e^-4	0.842	UPSTREAM hoe1 INTRON hoe1
2R	10214704	2R_10214704_SNP [dm3] 2R_14327199_SNP [dm6]	C	T	1.205e^-4	0.842	INTRON Shroom	TF binding site mE1_TFBS_cad
3R	23388844	3R_23388844_DEL [dm3] 3R_27563122_DEL [dm6]	TT	T	1.206e^-4	0.842	UTR_3_PRIME wdb
3R	6860314	3R_6860314_SNP [dm3] 3R_11034592_SNP [dm6]	A	C	1.206e^-4	0.842	INTRON CG34114
X	17901079	X_17901079_SNP [dm3] X_18007046_SNP [dm6]	T	C	1.206e^-4	0.842	SYNONYMOUS_CODING CG12672 INTRON Sh
3L	3948191	3L_3948191_SNP [dm3] 3L_3948191_SNP [dm6]	T	C	1.207e^-4	0.842	SYNONYMOUS_CODING CG10853 DOWNSTREAM CG14982 & 1 other
2R	10010517	2R_10010517_SNP [dm3] 2R_14123012_SNP [dm6]	G	A	1.215e^-4	0.842	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11951342	2L_11951342_SNP [dm3] 2L_11951342_SNP [dm6]	A	C	1.215e^-4	0.842	DOWNSTREAM CR43314 INTERGENIC
2R	10214943	2R_10214943_SNP [dm3] 2R_14327438_SNP [dm6]	G	A	1.224e^-4	0.842	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25215084	3R_25215084_SNP [dm3] 3R_29389362_SNP [dm6]	T	A	1.234e^-4	0.842	INTRON Ptp99A
2R	14159839	2R_14159839_SNP [dm3] 2R_18272334_SNP [dm6]	G	T	1.235e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9034446	3R_9034446_SNP [dm3] 3R_13208724_SNP [dm6]	A	T	1.244e^-4	0.842	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10351375	3R_10351375_SNP [dm3] 3R_14525653_SNP [dm6]	T	C	1.251e^-4	0.842	INTRON Pde6
X	11734928	X_11734928_SNP [dm3] X_11840895_SNP [dm6]	C	T	1.253e^-4	0.842	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	8381878	3R_8381878_SNP [dm3] 3R_12556156_SNP [dm6]	T	C	1.255e^-4	0.842	INTRON Octbeta2R
2L	15090489	2L_15090489_SNP [dm3] 2L_15090489_SNP [dm6]	T	A	1.255e^-4	0.842	INTRON CG15270
3R	10351849	3R_10351849_SNP [dm3] 3R_14526127_SNP [dm6]	A	C	1.257e^-4	0.842	INTRON Pde6
2R	10031189	2R_10031189_SNP [dm3] 2R_14143684_SNP [dm6]	C	T	1.258e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11953510	2L_11953510_SNP [dm3] 2L_11953510_SNP [dm6]	A	T	1.270e^-4	0.842	UPSTREAM bft EXON CR43314
X	11734890	X_11734890_SNP [dm3] X_11840857_SNP [dm6]	C	T	1.275e^-4	0.842	SPLICE_SITE_REGION Cyp28c1 INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
3R	9670641	3R_9670641_SNP [dm3] 3R_13844919_SNP [dm6]	C	A	1.277e^-4	0.842	INTERGENIC
3L	5813948	3L_5813948_SNP [dm3] 3L_5820848_SNP [dm6]	A	G	1.278e^-4	0.842	INTRON vn
X	18331829	X_18331829_SNP [dm3] X_18437796_SNP [dm6]	T	A	1.280e^-4	0.842	NON_SYNONYMOUS_CODING CG6290 UPSTREAM CG32548 INTRON CG32548	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9034298	3R_9034298_SNP [dm3] 3R_13208576_SNP [dm6]	A	C	1.282e^-4	0.842	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8937238	3R_8937238_SNP [dm3] 3R_13111516_SNP [dm6]	A	T	1.284e^-4	0.842	INTRON timeout
3L	7753309	3L_7753309_INS [dm3] 3L_7760209_INS [dm6]	T	TAT	1.287e^-4	0.842	UPSTREAM Hn INTERGENIC
3L	5703798	3L_5703798_SNP [dm3] 3L_5710698_SNP [dm6]	C	T	1.294e^-4	0.842	INTRON sif
X	17999561	X_17999561_SNP [dm3] X_18105528_SNP [dm6]	G	C	1.300e^-4	0.842	DOWNSTREAM wupA & 1 other INTERGENIC
2L	14111298	2L_14111298_SNP [dm3] 2L_14111298_SNP [dm6]	C	T	1.304e^-4	0.842	UPSTREAM CG31769 INTERGENIC
3L	18641616	3L_18641616_SNP [dm3] 3L_18648516_SNP [dm6]	C	G	1.315e^-4	0.842	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12910441	X_12910441_INS [dm3] X_13016408_INS [dm6]	T	TTCGAAGT	1.321e^-4	0.842	INTRON rad
3R	10352413	3R_10352413_SNP [dm3] 3R_14526691_SNP [dm6]	T	C	1.328e^-4	0.842	INTRON Pde6
3R	17001407	3R_17001407_SNP [dm3] 3R_21175685_SNP [dm6]	T	C	1.330e^-4	0.842	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad
3L	10745467	3L_10745467_SNP [dm3] 3L_10752367_SNP [dm6]	G	A	1.340e^-4	0.842	INTERGENIC
3R	8949701	3R_8949701_SNP [dm3] 3R_13123979_SNP [dm6]	T	C	1.341e^-4	0.842	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
2L	14094632	2L_14094632_SNP [dm3] 2L_14094632_SNP [dm6]	G	A	1.362e^-4	0.842	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14904601	2R_14904601_SNP [dm3] 2R_19017096_SNP [dm6]	C	T	1.370e^-4	0.842	INTERGENIC
2R	19984341	2R_19984341_SNP [dm3] 2R_24096818_SNP [dm6]	C	T	1.373e^-4	0.842	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13551657	X_13551657_SNP [dm3] X_13657624_SNP [dm6]	A	G	1.381e^-4	0.842	INTRON NFAT
3R	8943566	3R_8943566_SNP [dm3] 3R_13117844_SNP [dm6]	T	A	1.390e^-4	0.842	INTRON timeout
X	17175292	X_17175292_SNP [dm3] X_17281259_SNP [dm6]	T	C	1.395e^-4	0.842	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14904603	2R_14904603_SNP [dm3] 2R_19017098_SNP [dm6]	A	G	1.399e^-4	0.842	INTERGENIC
2L	11951355	2L_11951355_SNP [dm3] 2L_11951355_SNP [dm6]	C	A	1.402e^-4	0.842	DOWNSTREAM CR43314 INTERGENIC
2R	17099937	2R_17099937_SNP [dm3] 2R_21212432_SNP [dm6]	C	T	1.410e^-4	0.842	SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
3L	438695	3L_438695_SNP [dm3] 3L_438695_SNP [dm6]	A	T	1.411e^-4	0.842	UPSTREAM klar INTRON klar
3L	2354782	3L_2354782_SNP [dm3] 3L_2354782_SNP [dm6]	A	G	1.412e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7442284	2R_7442284_SNP [dm3] 2R_11554779_SNP [dm6]	G	A	1.444e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	17995007	3R_17995007_SNP [dm3] 3R_22169285_SNP [dm6]	G	A	1.446e^-4	0.842	INTRON SKIP
X	18740512	X_18740512_DEL [dm3] X_18846479_DEL [dm6]	TT	T	1.454e^-4	0.842	UTR_3_PRIME CG7280 INTRON CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9114095	X_9114095_SNP [dm3] X_9220062_SNP [dm6]	C	T	1.458e^-4	0.842	INTRON t
3R	23050422	3R_23050422_SNP [dm3] 3R_27224700_SNP [dm6]	T	C	1.461e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12396134	3R_12396134_SNP [dm3] 3R_16570412_SNP [dm6]	A	G	1.464e^-4	0.842	UTR_3_PRIME CG42342 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10351979	3R_10351979_SNP [dm3] 3R_14526257_SNP [dm6]	A	C	1.465e^-4	0.842	INTRON Pde6
X	17194469	X_17194469_SNP [dm3] X_17300436_SNP [dm6]	A	T	1.475e^-4	0.842	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12703996	3R_12703996_SNP [dm3] 3R_16878274_SNP [dm6]	A	T	1.490e^-4	0.842	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6674124	2R_6674124_SNP [dm3] 2R_10786619_SNP [dm6]	T	C	1.492e^-4	0.842	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5509295	2L_5509295_SNP [dm3] 2L_5509295_SNP [dm6]	T	A	1.493e^-4	0.842	INTERGENIC
3R	18808666	3R_18808666_SNP [dm3] 3R_22982944_SNP [dm6]	G	C	1.494e^-4	0.842	INTRON Nha2
2L	17387520	2L_17387520_SNP [dm3] 2L_17387520_SNP [dm6]	C	A	1.498e^-4	0.842	INTRON CLIP-190
2L	5509301	2L_5509301_SNP [dm3] 2L_5509301_SNP [dm6]	C	T	1.507e^-4	0.842	INTERGENIC
3R	8519201	3R_8519201_SNP [dm3] 3R_12693479_SNP [dm6]	A	G	1.509e^-4	0.842	SYNONYMOUS_CODING Arp1 UPSTREAM CG31347 DOWNSTREAM CG14391	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1095487	2L_1095487_SNP [dm3] 2L_1095487_SNP [dm6]	T	C	1.509e^-4	0.842	INTRON CG4629
3R	10351390	3R_10351390_SNP [dm3] 3R_14525668_SNP [dm6]	C	A	1.519e^-4	0.842	INTRON Pde6
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	1.520e^-4	0.842	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19037993	2L_19037993_INS [dm3] 2L_19037993_INS [dm6]	A	AA	1.520e^-4	0.842	INTRON mib2	TF binding site mE1_TFBS_cad
3L	7758117	3L_7758117_SNP [dm3] 3L_7765017_SNP [dm6]	A	T	1.525e^-4	0.842	SYNONYMOUS_CODING Clk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
4	184048	4_184048_SNP [dm3] 4_163422_SNP [dm6]	T	A	1.528e^-4	0.842	NON_SYNONYMOUS_CODING CG33978
3L	3720811	3L_3720811_SNP [dm3] 3L_3720811_SNP [dm6]	C	T	1.531e^-4	0.842	INTRON CG32264
2L	9090773	2L_9090773_SNP [dm3] 2L_9090773_SNP [dm6]	A	T	1.531e^-4	0.842	INTERGENIC
3L	1004156	3L_1004156_SNP [dm3] 3L_1004156_SNP [dm6]	T	C	1.533e^-4	0.842	INTRON trio
2R	19142871	2R_19142871_SNP [dm3] 2R_23255348_SNP [dm6]	T	A	1.533e^-4	0.842	INTERGENIC
3L	13354218	3L_13354218_SNP [dm3] 3L_13361118_SNP [dm6]	G	T	1.536e^-4	0.842	INTERGENIC
X	17901078	X_17901078_SNP [dm3] X_18007045_SNP [dm6]	T	C	1.542e^-4	0.842	NON_SYNONYMOUS_CODING CG12672 INTRON Sh
3L	6818416	3L_6818416_SNP [dm3] 3L_6825316_SNP [dm6]	T	C	1.543e^-4	0.842	INTERGENIC
3L	4941841	3L_4941841_SNP [dm3] 3L_4941841_SNP [dm6]	T	C	1.546e^-4	0.842	INTRON Con
X	16900489	X_16900489_SNP [dm3] X_17006456_SNP [dm6]	T	C	1.553e^-4	0.842	INTRON CG45002
3R	14043969	3R_14043969_SNP [dm3] 3R_18218247_SNP [dm6]	C	A	1.554e^-4	0.842	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
2R	12338934	2R_12338934_SNP [dm3] 2R_16451429_SNP [dm6]	C	A	1.569e^-4	0.842	INTERGENIC
3R	20208507	3R_20208507_SNP [dm3] 3R_24382785_SNP [dm6]	G	A	1.584e^-4	0.842	DOWNSTREAM CG17780 INTERGENIC
3R	27530148	3R_27530148_SNP [dm3] 3R_31704426_SNP [dm6]	G	C	1.590e^-4	0.842	DOWNSTREAM CR45052 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Kr
2R	11286575	2R_11286575_SNP [dm3] 2R_15399070_SNP [dm6]	C	T	1.593e^-4	0.842	INTERGENIC
3R	9041018	3R_9041018_SNP [dm3] 3R_13215296_SNP [dm6]	C	A	1.595e^-4	0.842	UPSTREAM CG8483 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9034473	3R_9034473_SNP [dm3] 3R_13208751_SNP [dm6]	A	T	1.604e^-4	0.842	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13701766	2L_13701766_SNP [dm3] 2L_13701766_SNP [dm6]	C	T	1.605e^-4	0.842	INTRON CG31814
X	17994307	X_17994307_SNP [dm3] X_18100274_SNP [dm6]	G	T	1.607e^-4	0.842	UPSTREAM CG7192 INTRON CG7192
2L	14782701	2L_14782701_INS [dm3] 2L_14782701_INS [dm6]	T	TT	1.607e^-4	0.842	DOWNSTREAM CG18636 EXON CR15280
3R	9017172	3R_9017172_SNP [dm3] 3R_13191450_SNP [dm6]	T	C	1.608e^-4	0.842	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14699055	3R_14699055_SNP [dm3] 3R_18873333_SNP [dm6]	A	T	1.617e^-4	0.842	INTERGENIC
3R	8964898	3R_8964898_SNP [dm3] 3R_13139176_SNP [dm6]	C	T	1.617e^-4	0.842	INTRON timeout & 2 others
3R	8975566	3R_8975566_SNP [dm3] 3R_13149844_SNP [dm6]	T	C	1.618e^-4	0.842	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
X	16876308	X_16876308_SNP [dm3] X_16982275_SNP [dm6]	C	A	1.619e^-4	0.842	INTRON CG45002
3R	10351326	3R_10351326_SNP [dm3] 3R_14525604_SNP [dm6]	A	G	1.620e^-4	0.842	INTRON Pde6
2L	18376517	2L_18376517_SNP [dm3] 2L_18376517_SNP [dm6]	A	T	1.624e^-4	0.842	INTRON Fas3
2R	10862897	2R_10862897_SNP [dm3] 2R_14975392_SNP [dm6]	T	C	1.625e^-4	0.842	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13471039	X_13471039_SNP [dm3] X_13577006_SNP [dm6]	C	T	1.625e^-4	0.842	START_GAINED Tango13 UTR_5_PRIME Tango13
2R	19451457	2R_19451457_SNP [dm3] 2R_23563934_SNP [dm6]	T	C	1.626e^-4	0.842	UTR_3_PRIME Pi3K59F UPSTREAM CG30184 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5095125	3L_5095125_SNP [dm3] 3L_5095125_SNP [dm6]	T	G	1.627e^-4	0.842	INTERGENIC
X	8184385	X_8184385_SNP [dm3] X_8290352_SNP [dm6]	G	T	1.632e^-4	0.842	INTRON nAChRalpha3
X	17177351	X_17177351_SNP [dm3] X_17283318_SNP [dm6]	T	G	1.640e^-4	0.842	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
3R	23050634	3R_23050634_SNP [dm3] 3R_27224912_SNP [dm6]	A	T	1.645e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15003123	2L_15003123_SNP [dm3] 2L_15003123_SNP [dm6]	T	A	1.649e^-4	0.842	INTERGENIC
2L	8373034	2L_8373034_SNP [dm3] 2L_8373034_SNP [dm6]	C	G	1.651e^-4	0.842	SYNONYMOUS_CODING CG17292	TF binding site mE1_TFBS_HSA
3R	12703890	3R_12703890_INS [dm3] 3R_16878168_INS [dm6]	T	TTGCA	1.666e^-4	0.842	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	483958	X_483958_SNP [dm3] X_589925_SNP [dm6]	A	T	1.666e^-4	0.842	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5850641	3R_5850641_DEL [dm3] 3R_10024919_DEL [dm6]	TCAT	T	1.666e^-4	0.842	INTRON Mical & 1 other
X	16900488	X_16900488_SNP [dm3] X_17006455_SNP [dm6]	C	G	1.679e^-4	0.842	INTRON CG45002
X	4079460	X_4079460_SNP [dm3] X_4185427_SNP [dm6]	C	T	1.680e^-4	0.842	INTRON Fas2
3R	9909111	3R_9909111_SNP [dm3] 3R_14083389_SNP [dm6]	G	A	1.684e^-4	0.842	INTRON foxo
2L	17390079	2L_17390079_SNP [dm3] 2L_17390079_SNP [dm6]	T	C	1.685e^-4	0.842	INTRON CLIP-190
2R	14852442	2R_14852442_DEL [dm3] 2R_18964937_DEL [dm6]	AATTTGAACTTGG...	A	1.688e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	17394922	2L_17394922_SNP [dm3] 2L_17394922_SNP [dm6]	T	A	1.691e^-4	0.842	INTRON CLIP-190
3R	8951261	3R_8951261_SNP [dm3] 3R_13125539_SNP [dm6]	C	T	1.696e^-4	0.842	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3L	4054697	3L_4054697_SNP [dm3] 3L_4054697_SNP [dm6]	G	C	1.698e^-4	0.842	INTRON CG1136
X	6720699	X_6720699_SNP [dm3] X_6826666_SNP [dm6]	A	G	1.698e^-4	0.842	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10351331	3R_10351331_SNP [dm3] 3R_14525609_SNP [dm6]	C	A	1.698e^-4	0.842	INTRON Pde6
3R	10351520	3R_10351520_SNP [dm3] 3R_14525798_SNP [dm6]	C	T	1.714e^-4	0.842	INTRON Pde6
2R	10001289	2R_10001289_SNP [dm3] 2R_14113784_SNP [dm6]	A	G	1.718e^-4	0.842	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	17390045	2L_17390045_SNP [dm3] 2L_17390045_SNP [dm6]	G	T	1.721e^-4	0.842	INTRON CLIP-190
2R	1712226	2R_1712226_SNP [dm3] 2R_5824721_SNP [dm6]	C	G	1.734e^-4	0.842	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11176996	2R_11176996_SNP [dm3] 2R_15289491_SNP [dm6]	G	A	1.734e^-4	0.842	INTRON Trpm
3R	8954371	3R_8954371_SNP [dm3] 3R_13128649_SNP [dm6]	A	G	1.738e^-4	0.842	INTRON timeout & 1 other
3L	22582843	3L_22582843_SNP [dm3] 3L_22589743_SNP [dm6]	C	T	1.741e^-4	0.842	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18412367	X_18412367_SNP [dm3] X_18518334_SNP [dm6]	T	C	1.752e^-4	0.842	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
X	12352035	X_12352035_DEL [dm3] X_12458002_DEL [dm6]	CAGCCGCC	C	1.753e^-4	0.842	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	8966044	2R_8966044_SNP [dm3] 2R_13078539_SNP [dm6]	G	A	1.759e^-4	0.842	INTRON Drl-2
3L	9582377	3L_9582377_DEL [dm3] 3L_9589277_DEL [dm6]	TT	C	1.763e^-4	0.842	INTRON CG42673
2L	17365431	2L_17365431_INS [dm3] 2L_17365431_INS [dm6]	A	AT	1.774e^-4	0.842	INTERGENIC
3R	23210969	3R_23210969_SNP [dm3] 3R_27385247_SNP [dm6]	T	C	1.780e^-4	0.842	INTRON side
3R	10351327	3R_10351327_SNP [dm3] 3R_14525605_SNP [dm6]	T	C	1.783e^-4	0.842	INTRON Pde6
X	16011705	X_16011705_SNP [dm3] X_16117672_SNP [dm6]	G	A	1.787e^-4	0.842	DOWNSTREAM disco-r INTERGENIC
3L	11171129	3L_11171129_SNP [dm3] 3L_11178029_SNP [dm6]	A	C	1.788e^-4	0.842	UTR_3_PRIME GlcAT-P
3R	9676392	3R_9676392_SNP [dm3] 3R_13850670_SNP [dm6]	G	A	1.789e^-4	0.842	INTERGENIC
2L	21888444	2L_21888444_SNP [dm3] 2L_21888444_SNP [dm6]	C	G	1.789e^-4	0.842	INTERGENIC
3R	26503210	3R_26503210_SNP [dm3] 3R_30677488_SNP [dm6]	G	A	1.796e^-4	0.842	INTERGENIC
X	13398348	X_13398348_INS [dm3] X_13504315_INS [dm6]	T	TTAAGAGCT	1.796e^-4	0.842	INTRON Neto	TF binding site mE1_TFBS_chinmo
2L	11953507	2L_11953507_INS [dm3] 2L_11953507_INS [dm6]	A	AA	1.807e^-4	0.842	UPSTREAM bft EXON CR43314
3L	508155	3L_508155_SNP [dm3] 3L_508155_SNP [dm6]	T	A	1.824e^-4	0.842	SYNONYMOUS_CODING klar
2L	17297124	2L_17297124_SNP [dm3] 2L_17297124_SNP [dm6]	T	G	1.826e^-4	0.842	INTERGENIC
3L	3784732	3L_3784732_SNP [dm3] 3L_3784732_SNP [dm6]	C	T	1.828e^-4	0.842	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4022066	2L_4022066_SNP [dm3] 2L_4022066_SNP [dm6]	T	A	1.833e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9422007	3R_9422007_SNP [dm3] 3R_13596285_SNP [dm6]	A	G	1.833e^-4	0.842	INTERGENIC
3L	16171599	3L_16171599_SNP [dm3] 3L_16178499_SNP [dm6]	T	A	1.835e^-4	0.842	UPSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6379743	3R_6379743_SNP [dm3] 3R_10554021_SNP [dm6]	G	T	1.840e^-4	0.842	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	23052325	3R_23052325_SNP [dm3] 3R_27226603_SNP [dm6]	T	G	1.846e^-4	0.842	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23052326	3R_23052326_SNP [dm3] 3R_27226604_SNP [dm6]	T	C	1.846e^-4	0.842	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14686419	3R_14686419_SNP [dm3] 3R_18860697_SNP [dm6]	T	G	1.853e^-4	0.842	INTERGENIC
2L	5509314	2L_5509314_SNP [dm3] 2L_5509314_SNP [dm6]	T	C	1.854e^-4	0.842	INTERGENIC
2R	16175655	2R_16175655_DEL [dm3] 2R_20288150_DEL [dm6]	ATGCAG	A	1.855e^-4	0.842	FRAME_SHIFT CG34199 DOWNSTREAM Cpr56F
3L	17410829	3L_17410829_SNP [dm3] 3L_17417729_SNP [dm6]	C	G	1.856e^-4	0.842	INTRON blot	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2R	9978327	2R_9978327_SNP [dm3] 2R_14090822_SNP [dm6]	G	T	1.856e^-4	0.842	UPSTREAM CG42288 INTRON Prosap & 1 other
2R	6945893	2R_6945893_DEL [dm3] 2R_11058388_DEL [dm6]	CATA	GGG	1.858e^-4	0.842	INTRON luna
2R	12336040	2R_12336040_SNP [dm3] 2R_16448535_SNP [dm6]	C	T	1.860e^-4	0.842	INTERGENIC
2R	15956792	2R_15956792_SNP [dm3] 2R_20069287_SNP [dm6]	T	A	1.861e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1002422	3L_1002422_INS [dm3] 3L_1002422_INS [dm6]	A	ATACTAGGTACGA...	1.868e^-4	0.842	INTRON trio
3R	4566465	3R_4566465_SNP [dm3] 3R_8740743_SNP [dm6]	G	A	1.868e^-4	0.842	INTRON CG9801	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10030914	2R_10030914_SNP [dm3] 2R_14143409_SNP [dm6]	T	C	1.875e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_bab1
X	16876309	X_16876309_SNP [dm3] X_16982276_SNP [dm6]	T	A	1.876e^-4	0.842	INTRON CG45002
X	4567141	X_4567141_SNP [dm3] X_4673108_SNP [dm6]	A	G	1.879e^-4	0.842	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8363723	3R_8363723_SNP [dm3] 3R_12538001_SNP [dm6]	T	G	1.889e^-4	0.842	INTRON Octbeta3R
2L	18909085	2L_18909085_SNP [dm3] 2L_18909085_SNP [dm6]	T	C	1.907e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	5645924	3L_5645924_SNP [dm3] 3L_5652824_SNP [dm6]	C	G	1.916e^-4	0.842	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8964790	2R_8964790_SNP [dm3] 2R_13077285_SNP [dm6]	G	A	1.921e^-4	0.842	INTRON Drl-2	TF binding site mE1_TFBS_cad
3R	3877621	3R_3877621_SNP [dm3] 3R_8051899_SNP [dm6]	A	T	1.924e^-4	0.842	INTRON CG43060
3R	14043939	3R_14043939_SNP [dm3] 3R_18218217_SNP [dm6]	T	G	1.928e^-4	0.842	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	14043942	3R_14043942_SNP [dm3] 3R_18218220_SNP [dm6]	G	C	1.928e^-4	0.842	UTR_3_PRIME CG7183 DOWNSTREAM CG14314
3R	8940866	3R_8940866_SNP [dm3] 3R_13115144_SNP [dm6]	C	T	1.929e^-4	0.842	INTRON timeout
3R	8363828	3R_8363828_SNP [dm3] 3R_12538106_SNP [dm6]	C	G	1.930e^-4	0.842	INTRON Octbeta3R
2R	8275965	2R_8275965_DEL [dm3] 2R_12388460_DEL [dm6]	TCATCTGGTT	T	1.935e^-4	0.842	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad
2L	10551000	2L_10551000_SNP [dm3] 2L_10551000_SNP [dm6]	C	A	1.939e^-4	0.842	INTRON Trim9
3R	8954119	3R_8954119_SNP [dm3] 3R_13128397_SNP [dm6]	C	T	1.946e^-4	0.842	SYNONYMOUS_CODING 2mit INTRON timeout
X	1241510	X_1241510_SNP [dm3] X_1347477_SNP [dm6]	G	A	1.948e^-4	0.842	SYNONYMOUS_CODING Tsp2A INTRON CG11418	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19772661	3R_19772661_INS [dm3] 3R_23946939_INS [dm6]	A	GAGGCC	1.949e^-4	0.842	INTRON CG12268
3R	19772663	3R_19772663_INS [dm3] 3R_23946941_INS [dm6]	T	TG	1.949e^-4	0.842	INTRON CG12268
2R	11809117	2R_11809117_SNP [dm3] 2R_15921612_SNP [dm6]	A	G	1.956e^-4	0.842	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	901640	3L_901640_SNP [dm3] 3L_901640_SNP [dm6]	C	T	1.956e^-4	0.842	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	9185157	3L_9185157_SNP [dm3] 3L_9192057_SNP [dm6]	C	A	1.957e^-4	0.842	INTERGENIC
2R	952682	2R_952682_SNP [dm3] 2R_5065177_SNP [dm6]	G	A	1.967e^-4	0.842	DOWNSTREAM TpnC41C INTERGENIC
2R	17577554	2R_17577554_SNP [dm3] 2R_21690049_SNP [dm6]	G	C	1.968e^-4	0.842	NON_SYNONYMOUS_CODING CG10307 DOWNSTREAM Tim10 & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	14904503	2R_14904503_SNP [dm3] 2R_19016998_SNP [dm6]	G	A	1.975e^-4	0.842	INTERGENIC
3L	2287465	3L_2287465_SNP [dm3] 3L_2287465_SNP [dm6]	C	T	1.986e^-4	0.842	INTRON MsR2
3R	10351632	3R_10351632_SNP [dm3] 3R_14525910_SNP [dm6]	G	A	1.987e^-4	0.842	INTRON Pde6
2R	6676747	2R_6676747_SNP [dm3] 2R_10789242_SNP [dm6]	G	A	1.992e^-4	0.842	INTRON CG33144
3R	18808665	3R_18808665_SNP [dm3] 3R_22982943_SNP [dm6]	G	A	1.992e^-4	0.842	INTRON Nha2
3R	12704015	3R_12704015_SNP [dm3] 3R_16878293_SNP [dm6]	T	C	1.995e^-4	0.842	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	1.995e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4952152	3L_4952152_SNP [dm3] 3L_4952152_SNP [dm6]	A	G	1.999e^-4	0.842	INTRON Con	TF binding site mE1_TFBS_chinmo
X	8924890	X_8924890_SNP [dm3] X_9030857_SNP [dm6]	C	G	2.000e^-4	0.842	UTR_5_PRIME CG42388 INTRON CR43836
X	19723694	X_19723694_SNP [dm3] X_19829661_SNP [dm6]	G	A	2.001e^-4	0.842	DOWNSTREAM pico INTERGENIC
3L	15390375	3L_15390375_DEL [dm3] 3L_15397275_DEL [dm6]	GAAATAG	G	2.005e^-4	0.842	INTERGENIC
2R	12449036	2R_12449036_SNP [dm3] 2R_16561531_SNP [dm6]	G	C	2.012e^-4	0.842	INTRON DAT
2R	10607568	2R_10607568_SNP [dm3] 2R_14720063_SNP [dm6]	T	G	2.041e^-4	0.842	INTERGENIC
2R	20053251	2R_20053251_SNP [dm3] 2R_24165728_SNP [dm6]	C	T	2.056e^-4	0.842	INTRON CG3328
3L	1002483	3L_1002483_SNP [dm3] 3L_1002483_SNP [dm6]	G	A	2.068e^-4	0.842	INTRON trio
X	9069807	X_9069807_SNP [dm3] X_9175774_SNP [dm6]	C	G	2.076e^-4	0.842	UTR_3_PRIME mei-P26 DOWNSTREAM mei-P26
3R	11461321	3R_11461321_SNP [dm3] 3R_15635599_SNP [dm6]	C	T	2.076e^-4	0.842	SYNONYMOUS_CODING CG43335
3R	8926369	3R_8926369_SNP [dm3] 3R_13100647_SNP [dm6]	C	G	2.079e^-4	0.842	INTRON timeout
2L	19030454	2L_19030454_SNP [dm3] 2L_19030454_SNP [dm6]	A	G	2.079e^-4	0.842	SYNONYMOUS_CODING Side DOWNSTREAM hk	TF binding site mE1_TFBS_chinmo
3L	6532862	3L_6532862_SNP [dm3] 3L_6539762_SNP [dm6]	C	T	2.084e^-4	0.842	INTRON sfl
2L	17385080	2L_17385080_DEL [dm3] 2L_17385080_DEL [dm6]	AA	A	2.084e^-4	0.842	UTR_5_PRIME CLIP-190 UPSTREAM Lrch INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	10159979	3R_10159979_SNP [dm3] 3R_14334257_SNP [dm6]	C	T	2.090e^-4	0.842	INTRON NK7.1
3R	23388917	3R_23388917_SNP [dm3] 3R_27563195_SNP [dm6]	C	T	2.092e^-4	0.842	UTR_3_PRIME wdb
2L	15090473	2L_15090473_SNP [dm3] 2L_15090473_SNP [dm6]	G	A	2.095e^-4	0.842	INTRON CG15270
3R	10351412	3R_10351412_SNP [dm3] 3R_14525690_SNP [dm6]	T	A	2.102e^-4	0.842	INTRON Pde6
3L	5002766	3L_5002766_SNP [dm3] 3L_5002766_SNP [dm6]	C	T	2.103e^-4	0.842	INTRON Con
3L	7860251	3L_7860251_SNP [dm3] 3L_7867151_SNP [dm6]	G	A	2.105e^-4	0.842	INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17654120	3R_17654120_SNP [dm3] 3R_21828398_SNP [dm6]	A	G	2.105e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	7616578	3R_7616578_SNP [dm3] 3R_11790856_SNP [dm6]	A	G	2.107e^-4	0.842	SYNONYMOUS_CODING Sbf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12336038	2R_12336038_SNP [dm3] 2R_16448533_SNP [dm6]	G	A	2.115e^-4	0.842	INTERGENIC
3R	11304827	3R_11304827_SNP [dm3] 3R_15479105_SNP [dm6]	C	G	2.116e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14041122	3R_14041122_SNP [dm3] 3R_18215400_SNP [dm6]	A	T	2.121e^-4	0.842	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3R	10533748	3R_10533748_SNP [dm3] 3R_14708026_SNP [dm6]	C	T	2.122e^-4	0.842	INTRON kibra
3L	16530681	3L_16530681_SNP [dm3] 3L_16537581_SNP [dm6]	G	T	2.124e^-4	0.842	INTRON CG43373
X	6438325	X_6438325_SNP [dm3] X_6544292_SNP [dm6]	G	T	2.127e^-4	0.842	INTRON CG34417	TF binding site BDTNP1_TFBS_dl
3L	18033134	3L_18033134_SNP [dm3] 3L_18040034_SNP [dm6]	A	G	2.129e^-4	0.842	UPSTREAM CG32192 INTRON Eip75B
2L	11953687	2L_11953687_SNP [dm3] 2L_11953687_SNP [dm6]	C	T	2.136e^-4	0.842	UPSTREAM bft EXON CR43314
3R	10901161	3R_10901161_DEL [dm3] 3R_15075439_DEL [dm6]	TCA	C	2.144e^-4	0.842	INTRON dpr9
X	11734924	X_11734924_SNP [dm3] X_11840891_SNP [dm6]	T	C	2.145e^-4	0.842	INTRON Cyp28c1	TF binding site mE1_TFBS_chinmo
2L	12638336	2L_12638336_SNP [dm3] 2L_12638336_SNP [dm6]	A	G	2.153e^-4	0.842	INTRON Ref2	TF binding site BDTNP1_TFBS_twi
3L	6818415	3L_6818415_SNP [dm3] 3L_6825315_SNP [dm6]	C	T	2.156e^-4	0.842	INTERGENIC
3R	8975238	3R_8975238_SNP [dm3] 3R_13149516_SNP [dm6]	A	G	2.157e^-4	0.842	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	4054478	3L_4054478_SNP [dm3] 3L_4054478_SNP [dm6]	T	A	2.158e^-4	0.842	INTRON CG1136
2L	22064840	2L_22064840_SNP [dm3] 2L_22064840_SNP [dm6]	G	A	2.172e^-4	0.842	SYNONYMOUS_CODING CG42597
3L	12527742	3L_12527742_SNP [dm3] 3L_12534642_SNP [dm6]	A	G	2.174e^-4	0.842	UTR_5_PRIME CG10688 UPSTREAM Tsf2 DOWNSTREAM CG34242 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
4	229842	4_229842_SNP [dm3] 4_209216_SNP [dm6]	A	T	2.188e^-4	0.842	INTERGENIC	transposable element FlyBase
3L	5574917	3L_5574917_INS [dm3] 3L_5581817_INS [dm6]	C	CA	2.195e^-4	0.842	INTERGENIC
2R	10024871	2R_10024871_SNP [dm3] 2R_14137366_SNP [dm6]	T	C	2.210e^-4	0.842	INTRON Prosap
3R	9034082	3R_9034082_SNP [dm3] 3R_13208360_SNP [dm6]	A	T	2.211e^-4	0.842	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10585695	X_10585695_SNP [dm3] X_10691662_SNP [dm6]	A	G	2.214e^-4	0.842	INTRON X11Lbeta
3L	5982659	3L_5982659_INS [dm3] 3L_5989559_INS [dm6]	A	AA	2.220e^-4	0.842	INTERGENIC
2R	8966875	2R_8966875_SNP [dm3] 2R_13079370_SNP [dm6]	C	T	2.228e^-4	0.842	UTR_5_PRIME Drl-2
2L	7350909	2L_7350909_SNP [dm3] 2L_7350909_SNP [dm6]	A	G	2.233e^-4	0.842	INTRON Wnt6
2L	9089185	2L_9089185_SNP [dm3] 2L_9089185_SNP [dm6]	G	A	2.234e^-4	0.842	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1671683	2L_1671683_DEL [dm3] 2L_1671683_DEL [dm6]	TGT	T	2.246e^-4	0.842	INTRON chinmo
2L	6253928	2L_6253928_DEL [dm3] 2L_6253928_DEL [dm6]	GG	G	2.251e^-4	0.842	INTRON Ddr	TF binding site mE1_TFBS_Trl
2R	4479671	2R_4479671_SNP [dm3] 2R_8592166_SNP [dm6]	T	C	2.254e^-4	0.842	UPSTREAM CG43183 DOWNSTREAM CG14752 INTERGENIC
2R	12788362	2R_12788362_SNP [dm3] 2R_16900857_SNP [dm6]	T	C	2.256e^-4	0.842	SYNONYMOUS_CODING inaC
2R	13227470	2R_13227470_SNP [dm3] 2R_17339965_SNP [dm6]	C	T	2.258e^-4	0.842	INTRON mbl
3R	23050489	3R_23050489_SNP [dm3] 3R_27224767_SNP [dm6]	T	C	2.258e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18715479	2R_18715479_SNP [dm3] 2R_22827956_SNP [dm6]	T	C	2.283e^-4	0.842	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
2L	17384410	2L_17384410_SNP [dm3] 2L_17384410_SNP [dm6]	A	T	2.289e^-4	0.842	UPSTREAM CLIP-190 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	16011747	X_16011747_SNP [dm3] X_16117714_SNP [dm6]	G	A	2.290e^-4	0.842	DOWNSTREAM disco-r INTERGENIC
3L	13705238	3L_13705238_SNP [dm3] 3L_13712138_SNP [dm6]	C	T	2.291e^-4	0.842	INTRON bru-3
3R	14033155	3R_14033155_SNP [dm3] 3R_18207433_SNP [dm6]	A	T	2.291e^-4	0.842	INTRON CG7985
2L	14319218	2L_14319218_SNP [dm3] 2L_14319218_SNP [dm6]	G	T	2.292e^-4	0.842	INTRON wb
2L	19235215	2L_19235215_SNP [dm3] 2L_19235215_SNP [dm6]	C	A	2.295e^-4	0.842	INTERGENIC
3L	4041435	3L_4041435_SNP [dm3] 3L_4041435_SNP [dm6]	G	A	2.297e^-4	0.842	SYNONYMOUS_CODING Rcd5 UPSTREAM CG11593	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18856722	2R_18856722_SNP [dm3] 2R_22969199_SNP [dm6]	T	C	2.301e^-4	0.842	INTERGENIC
2R	14904531	2R_14904531_SNP [dm3] 2R_19017026_SNP [dm6]	T	G	2.303e^-4	0.842	INTERGENIC
X	3257287	X_3257287_INS [dm3] X_3363254_INS [dm6]	T	TT	2.304e^-4	0.842	INTERGENIC
2R	10029833	2R_10029833_SNP [dm3] 2R_14142328_SNP [dm6]	C	G	2.304e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
2L	15003080	2L_15003080_SNP [dm3] 2L_15003080_SNP [dm6]	G	A	2.307e^-4	0.842	INTERGENIC
3R	26667112	3R_26667112_SNP [dm3] 3R_30841390_SNP [dm6]	A	T	2.308e^-4	0.842	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3R	21523271	3R_21523271_SNP [dm3] 3R_25697549_SNP [dm6]	G	A	2.310e^-4	0.842	INTERGENIC
2R	6674708	2R_6674708_SNP [dm3] 2R_10787203_SNP [dm6]	G	A	2.316e^-4	0.842	UPSTREAM CR44301 INTRON CG33144
2L	17297358	2L_17297358_SNP [dm3] 2L_17297358_SNP [dm6]	C	A	2.320e^-4	0.842	INTERGENIC
3R	27476678	3R_27476678_SNP [dm3] 3R_31650956_SNP [dm6]	T	C	2.322e^-4	0.842	INTRON kek6
2R	11730628	2R_11730628_SNP [dm3] 2R_15843123_SNP [dm6]	G	T	2.323e^-4	0.842	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	11174943	3L_11174943_SNP [dm3] 3L_11181843_SNP [dm6]	A	G	2.326e^-4	0.842	INTRON GlcAT-P
X	4359527	X_4359527_SNP [dm3] X_4465494_SNP [dm6]	G	C	2.327e^-4	0.842	INTRON bi & 1 other
3L	440200	3L_440200_SNP [dm3] 3L_440200_SNP [dm6]	C	T	2.332e^-4	0.842	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16171622	3L_16171622_SNP [dm3] 3L_16178522_SNP [dm6]	C	T	2.332e^-4	0.842	UPSTREAM CR45755 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1913778	2R_1913778_SNP [dm3] 2R_6026273_SNP [dm6]	A	T	2.334e^-4	0.842	UTR_3_PRIME SCAP
3R	6279172	3R_6279172_DEL [dm3] 3R_10453450_DEL [dm6]	ATTTAAA	A	2.337e^-4	0.842	INTERGENIC
2L	15769828	2L_15769828_SNP [dm3] 2L_15769828_SNP [dm6]	A	G	2.348e^-4	0.842	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16889586	X_16889586_SNP [dm3] X_16995553_SNP [dm6]	C	T	2.348e^-4	0.842	INTRON CG45002	TF binding site mE1_TFBS_HSA
X	19081780	X_19081780_SNP [dm3] X_19187747_SNP [dm6]	A	G	2.356e^-4	0.842	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	641442	X_641442_SNP [dm3] X_747409_SNP [dm6]	G	A	2.357e^-4	0.842	NON_SYNONYMOUS_CODING sdk
3R	14033221	3R_14033221_SNP [dm3] 3R_18207499_SNP [dm6]	T	G	2.364e^-4	0.842	INTRON CG7985
3R	4257142	3R_4257142_SNP [dm3] 3R_8431420_SNP [dm6]	G	A	2.367e^-4	0.842	INTRON CG45263
2L	7342450	2L_7342450_SNP [dm3] 2L_7342450_SNP [dm6]	C	A	2.369e^-4	0.842	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17176600	X_17176600_SNP [dm3] X_17282567_SNP [dm6]	C	T	2.373e^-4	0.842	UTR_5_PRIME CG5445 INTRON CG8664	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	13440603	2R_13440603_SNP [dm3] 2R_17553098_SNP [dm6]	C	A	2.380e^-4	0.842	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19028281	2L_19028281_SNP [dm3] 2L_19028281_SNP [dm6]	C	T	2.385e^-4	0.842	INTRON Side
2L	19159078	2L_19159078_DEL [dm3] 2L_19159078_DEL [dm6]	TT	T	2.387e^-4	0.842	INTRON brat EXON CR44977	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16626363	X_16626363_SNP [dm3] X_16732330_SNP [dm6]	T	C	2.392e^-4	0.842	SYNONYMOUS_CODING TwdlX INTRON CG9634
2R	10030798	2R_10030798_SNP [dm3] 2R_14143293_SNP [dm6]	T	C	2.396e^-4	0.842	INTERGENIC
3L	14999785	3L_14999785_SNP [dm3] 3L_15006685_SNP [dm6]	T	C	2.397e^-4	0.842	INTRON Reck	TF binding site mE1_TFBS_HSA
X	17194499	X_17194499_SNP [dm3] X_17300466_SNP [dm6]	C	A	2.402e^-4	0.842	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17927406	2R_17927406_SNP [dm3] 2R_22039901_SNP [dm6]	A	T	2.405e^-4	0.842	UPSTREAM CG34370 INTERGENIC
3R	8968047	3R_8968047_SNP [dm3] 3R_13142325_SNP [dm6]	G	T	2.410e^-4	0.842	INTRON timeout & 2 others
X	17181250	X_17181250_SNP [dm3] X_17287217_SNP [dm6]	G	A	2.411e^-4	0.842	INTRON CG5445 & 1 other	TF binding site mE1_TFBS_HSA
X	21892454	X_21892454_SNP [dm3] X_22490618_SNP [dm6]	G	A	2.415e^-4	0.842	UPSTREAM l_1_G0196 INTRON l_1_G0196 & 1 other
3R	10924592	3R_10924592_SNP [dm3] 3R_15098870_SNP [dm6]	C	T	2.427e^-4	0.842	SYNONYMOUS_CODING CG42788	TF binding site BDTNP1_TFBS_sna
3R	9022473	3R_9022473_SNP [dm3] 3R_13196751_SNP [dm6]	T	G	2.427e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	8868973	3L_8868973_SNP [dm3] 3L_8875873_SNP [dm6]	A	G	2.438e^-4	0.842	INTRON dally
2R	10001272	2R_10001272_SNP [dm3] 2R_14113767_SNP [dm6]	C	G	2.440e^-4	0.842	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26667109	3R_26667109_SNP [dm3] 3R_30841387_SNP [dm6]	C	A	2.449e^-4	0.842	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3R	26667110	3R_26667110_SNP [dm3] 3R_30841388_SNP [dm6]	T	A	2.449e^-4	0.842	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3R	23052322	3R_23052322_DEL [dm3] 3R_27226600_DEL [dm6]	CC	C	2.453e^-4	0.842	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16947190	X_16947190_SNP [dm3] X_17053157_SNP [dm6]	G	T	2.456e^-4	0.842	INTRON CG45002
2L	14106414	2L_14106414_SNP [dm3] 2L_14106414_SNP [dm6]	T	A	2.457e^-4	0.842	SYNONYMOUS_CODING CG16879
2L	18142071	2L_18142071_SNP [dm3] 2L_18142071_SNP [dm6]	C	G	2.469e^-4	0.842	NON_SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9582384	3L_9582384_SNP [dm3] 3L_9589284_SNP [dm6]	A	C	2.472e^-4	0.842	INTRON CG42673
3R	8379920	3R_8379920_SNP [dm3] 3R_12554198_SNP [dm6]	T	C	2.475e^-4	0.842	INTRON Octbeta2R
3L	984381	3L_984381_SNP [dm3] 3L_984381_SNP [dm6]	A	C	2.478e^-4	0.842	UTR_3_PRIME Glut1 INTRON Glut1
3R	26649134	3R_26649134_SNP [dm3] 3R_30823412_SNP [dm6]	C	T	2.485e^-4	0.842	UPSTREAM cindr INTRON cindr
3R	11219370	3R_11219370_SNP [dm3] 3R_15393648_SNP [dm6]	T	C	2.490e^-4	0.842	INTRON Rbp
3L	7860289	3L_7860289_SNP [dm3] 3L_7867189_SNP [dm6]	T	G	2.493e^-4	0.842	INTRON Pdp1	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6279249	3R_6279249_SNP [dm3] 3R_10453527_SNP [dm6]	A	T	2.494e^-4	0.842	INTERGENIC
3L	3978215	3L_3978215_SNP [dm3] 3L_3978215_SNP [dm6]	T	C	2.495e^-4	0.842	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17813018	2R_17813018_SNP [dm3] 2R_21925513_SNP [dm6]	G	A	2.497e^-4	0.842	INTRON Fili
2R	12293561	2R_12293561_SNP [dm3] 2R_16406056_SNP [dm6]	C	G	2.501e^-4	0.842	INTRON Sema-2b
3L	4054473	3L_4054473_SNP [dm3] 3L_4054473_SNP [dm6]	A	C	2.504e^-4	0.842	INTRON CG1136
2L	4212161	2L_4212161_SNP [dm3] 2L_4212161_SNP [dm6]	A	T	2.505e^-4	0.842	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	254916	4_254916_SNP [dm3] 4_234290_SNP [dm6]	C	T	2.506e^-4	0.842	NON_SYNONYMOUS_CODING CG1674	TF binding site BDTNP1_TFBS_dl
2R	18715443	2R_18715443_SNP [dm3] 2R_22827920_SNP [dm6]	C	T	2.506e^-4	0.842	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
2R	8605964	2R_8605964_SNP [dm3] 2R_12718459_SNP [dm6]	A	C	2.509e^-4	0.842	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10024872	2R_10024872_SNP [dm3] 2R_14137367_SNP [dm6]	A	G	2.513e^-4	0.842	INTRON Prosap
2L	16190705	2L_16190705_SNP [dm3] 2L_16190705_SNP [dm6]	T	C	2.526e^-4	0.842	DOWNSTREAM Ca-alpha1D INTERGENIC
2L	379490	2L_379490_SNP [dm3] 2L_379490_SNP [dm6]	A	C	2.526e^-4	0.842	INTRON al	TF binding site mE1_TFBS_sens
3L	9582866	3L_9582866_SNP [dm3] 3L_9589766_SNP [dm6]	G	T	2.531e^-4	0.842	INTRON CG42673
3L	11953326	3L_11953326_SNP [dm3] 3L_11960226_SNP [dm6]	A	T	2.537e^-4	0.842	INTRON prc
3R	8956485	3R_8956485_SNP [dm3] 3R_13130763_SNP [dm6]	C	T	2.539e^-4	0.842	INTRON timeout & 1 other
3L	18033021	3L_18033021_SNP [dm3] 3L_18039921_SNP [dm6]	G	T	2.557e^-4	0.842	UPSTREAM CG32192 INTRON Eip75B
2L	21214925	2L_21214925_DEL [dm3] 2L_21214925_DEL [dm6]	TCT	T	2.559e^-4	0.842	DOWNSTREAM snRNA:U4:39B INTRON Atg18b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14094525	2L_14094525_SNP [dm3] 2L_14094525_SNP [dm6]	T	G	2.561e^-4	0.842	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15964551	2L_15964551_SNP [dm3] 2L_15964551_SNP [dm6]	C	T	2.563e^-4	0.842	INTERGENIC
2R	10185026	2R_10185026_SNP [dm3] 2R_14297521_SNP [dm6]	A	T	2.567e^-4	0.842	INTRON Ih
3R	18880557	3R_18880557_SNP [dm3] 3R_23054835_SNP [dm6]	G	A	2.574e^-4	0.842	SPLICE_SITE_REGION CG17119 UPSTREAM p53 INTRON CG17119	TF binding site BDTNP1_TFBS_prd
2R	11809104	2R_11809104_SNP [dm3] 2R_15921599_SNP [dm6]	T	A	2.574e^-4	0.842	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9041063	3R_9041063_SNP [dm3] 3R_13215341_SNP [dm6]	A	T	2.587e^-4	0.842	UPSTREAM CG8483 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17194592	X_17194592_SNP [dm3] X_17300559_SNP [dm6]	C	T	2.588e^-4	0.842	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13062888	2R_13062888_INS [dm3] 2R_17175383_INS [dm6]	T	TGT	2.591e^-4	0.842	INTERGENIC
2L	5710191	2L_5710191_SNP [dm3] 2L_5710191_SNP [dm6]	A	C	2.594e^-4	0.842	INTRON CG7236
3L	15727712	3L_15727712_SNP [dm3] 3L_15734612_SNP [dm6]	C	A	2.596e^-4	0.842	INTERGENIC
2R	7016022	2R_7016022_SNP [dm3] 2R_11128517_SNP [dm6]	C	T	2.597e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17865750	2R_17865750_SNP [dm3] 2R_21978245_SNP [dm6]	T	A	2.597e^-4	0.842	UTR_3_PRIME Gr58b DOWNSTREAM Gr58c
3R	19772670	3R_19772670_INS [dm3] 3R_23946948_INS [dm6]	T	TCACAT	2.597e^-4	0.842	INTRON CG12268
2L	728625	2L_728625_SNP [dm3] 2L_728625_SNP [dm6]	A	G	2.603e^-4	0.842	NON_SYNONYMOUS_CODING Hsp60B
2R	13129686	2R_13129686_SNP [dm3] 2R_17242181_SNP [dm6]	G	T	2.610e^-4	0.842	INTRON mbl
X	17179596	X_17179596_SNP [dm3] X_17285563_SNP [dm6]	G	A	2.610e^-4	0.842	DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
2L	14515868	2L_14515868_SNP [dm3] 2L_14515868_SNP [dm6]	C	T	2.611e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	7632821	2R_7632821_SNP [dm3] 2R_11745316_SNP [dm6]	C	A	2.611e^-4	0.842	INTERGENIC
4	438811	4_438811_SNP [dm3] 4_418185_SNP [dm6]	C	T	2.617e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8955269	3R_8955269_SNP [dm3] 3R_13129547_SNP [dm6]	C	A	2.623e^-4	0.842	INTRON timeout & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7023970	3L_7023970_SNP [dm3] 3L_7030870_SNP [dm6]	A	G	2.624e^-4	0.842	INTRON Mp
3L	9746857	3L_9746857_SNP [dm3] 3L_9753757_SNP [dm6]	G	A	2.630e^-4	0.842	INTRON CG42268
3L	15280483	3L_15280483_SNP [dm3] 3L_15287383_SNP [dm6]	A	G	2.632e^-4	0.842	INTERGENIC
2L	8380945	2L_8380945_SNP [dm3] 2L_8380945_SNP [dm6]	C	A	2.632e^-4	0.842	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG13392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	19705286	3R_19705286_SNP [dm3] 3R_23879564_SNP [dm6]	C	T	2.637e^-4	0.842	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5907152	3L_5907152_SNP [dm3] 3L_5914052_SNP [dm6]	T	A	2.639e^-4	0.842	INTRON CG13288
3L	14966122	3L_14966122_SNP [dm3] 3L_14973022_SNP [dm6]	T	C	2.640e^-4	0.842	UTR_3_PRIME Brd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19772658	3R_19772658_SNP [dm3] 3R_23946936_SNP [dm6]	A	G	2.654e^-4	0.843	INTRON CG12268
3R	8374265	3R_8374265_SNP [dm3] 3R_12548543_SNP [dm6]	G	A	2.661e^-4	0.843	UPSTREAM Octbeta3R INTERGENIC
X	19081629	X_19081629_SNP [dm3] X_19187596_SNP [dm6]	A	C	2.663e^-4	0.843	UPSTREAM Mec2 DOWNSTREAM CG33253 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26666789	3R_26666789_SNP [dm3] 3R_30841067_SNP [dm6]	C	G	2.664e^-4	0.843	SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7395544	2R_7395544_SNP [dm3] 2R_11508039_SNP [dm6]	A	G	2.669e^-4	0.843	UTR_3_PRIME inv DOWNSTREAM inv
3L	13344708	3L_13344708_SNP [dm3] 3L_13351608_SNP [dm6]	T	G	2.680e^-4	0.843	SYNONYMOUS_CODING CG17687
X	16947000	X_16947000_SNP [dm3] X_17052967_SNP [dm6]	T	C	2.684e^-4	0.843	INTRON CG45002
3L	11009833	3L_11009833_SNP [dm3] 3L_11016733_SNP [dm6]	T	A	2.685e^-4	0.843	INTERGENIC
3R	9033460	3R_9033460_SNP [dm3] 3R_13207738_SNP [dm6]	A	C	2.689e^-4	0.843	INTERGENIC
4	197592	4_197592_SNP [dm3] 4_176966_SNP [dm6]	C	A	2.693e^-4	0.843	DOWNSTREAM Arl4 INTERGENIC
3L	6060844	3L_6060844_SNP [dm3] 3L_6067744_SNP [dm6]	A	G	2.697e^-4	0.843	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8940868	3R_8940868_SNP [dm3] 3R_13115146_SNP [dm6]	A	T	2.699e^-4	0.843	INTRON timeout
3L	18717459	3L_18717459_SNP [dm3] 3L_18724359_SNP [dm6]	A	C	2.701e^-4	0.843	DOWNSTREAM CR43985 INTERGENIC
X	6530243	X_6530243_SNP [dm3] X_6636210_SNP [dm6]	G	T	2.721e^-4	0.843	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
3R	9017301	3R_9017301_SNP [dm3] 3R_13191579_SNP [dm6]	G	A	2.734e^-4	0.843	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13705245	3L_13705245_SNP [dm3] 3L_13712145_SNP [dm6]	A	T	2.744e^-4	0.843	INTRON bru-3
3L	3038458	3L_3038458_DEL [dm3] 3L_3038458_DEL [dm6]	CAGCTACAAC	C	2.747e^-4	0.843	UTR_5_PRIME CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9600415	X_9600415_SNP [dm3] X_9706382_SNP [dm6]	A	G	2.754e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	10710324	3L_10710324_SNP [dm3] 3L_10717224_SNP [dm6]	A	C	2.759e^-4	0.843	INTERGENIC
3L	7312861	3L_7312861_SNP [dm3] 3L_7319761_SNP [dm6]	T	C	2.761e^-4	0.843	UPSTREAM CG8607 INTERGENIC
2R	10019993	2R_10019993_SNP [dm3] 2R_14132488_SNP [dm6]	C	G	2.764e^-4	0.843	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	884731	3L_884731_SNP [dm3] 3L_884731_SNP [dm6]	G	C	2.769e^-4	0.843	INTRON CG32479
3R	5918990	3R_5918990_SNP [dm3] 3R_10093268_SNP [dm6]	A	G	2.770e^-4	0.843	UPSTREAM CR43459 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7867007	3L_7867007_SNP [dm3] 3L_7873907_SNP [dm6]	C	T	2.774e^-4	0.843	INTRON CG32365
2L	5892426	2L_5892426_SNP [dm3] 2L_5892426_SNP [dm6]	A	T	2.781e^-4	0.843	UTR_3_PRIME Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8573329	3L_8573329_SNP [dm3] 3L_8580229_SNP [dm6]	T	A	2.781e^-4	0.843	INTRON CG43078
3L	9400754	3L_9400754_SNP [dm3] 3L_9407654_SNP [dm6]	T	A	2.791e^-4	0.843	UTR_3_PRIME CG4022 DOWNSTREAM CG4022
X	17176340	X_17176340_SNP [dm3] X_17282307_SNP [dm6]	G	C	2.791e^-4	0.843	NON_SYNONYMOUS_CODING CG8664 UPSTREAM CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8966260	2R_8966260_SNP [dm3] 2R_13078755_SNP [dm6]	A	C	2.800e^-4	0.843	INTRON Drl-2
3R	8964383	3R_8964383_INS [dm3] 3R_13138661_INS [dm6]	T	TATCTTATTATTAT...	2.801e^-4	0.843	INTRON timeout & 2 others
2R	10030846	2R_10030846_INS [dm3] 2R_14143341_INS [dm6]	A	ATTTTACAAGGTGACATCTT...	2.801e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14061767	2R_14061767_SNP [dm3] 2R_18174262_SNP [dm6]	G	A	2.805e^-4	0.843	SYNONYMOUS_CODING CG10916 DOWNSTREAM CR45315 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4054690	3L_4054690_SNP [dm3] 3L_4054690_SNP [dm6]	A	G	2.811e^-4	0.843	INTRON CG1136
2R	18670936	2R_18670936_SNP [dm3] 2R_22783431_SNP [dm6]	T	C	2.815e^-4	0.843	UPSTREAM CG30270 INTRON CG42260
2R	8964195	2R_8964195_SNP [dm3] 2R_13076690_SNP [dm6]	T	C	2.816e^-4	0.843	INTRON Drl-2
2L	14094539	2L_14094539_SNP [dm3] 2L_14094539_SNP [dm6]	G	C	2.817e^-4	0.843	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5656484	3R_5656484_SNP [dm3] 3R_9830762_SNP [dm6]	C	A	2.820e^-4	0.843	INTRON Teh1
2R	10133755	2R_10133755_SNP [dm3] 2R_14246250_SNP [dm6]	C	A	2.825e^-4	0.843	UPSTREAM Mdr50 DOWNSTREAM CG8503 INTERGENIC
4	283374	4_283374_SNP [dm3] 4_262748_SNP [dm6]	G	A	2.826e^-4	0.843	DOWNSTREAM RhoGAP102A INTRON RhoGAP102A
2R	10024896	2R_10024896_SNP [dm3] 2R_14137391_SNP [dm6]	G	A	2.832e^-4	0.843	INTRON Prosap
2R	16250922	2R_16250922_SNP [dm3] 2R_20363417_SNP [dm6]	G	T	2.839e^-4	0.843	INTERGENIC
X	16946914	X_16946914_DEL [dm3] X_17052881_DEL [dm6]	TTTTTTATCACATCTAT...	T	2.840e^-4	0.843	INTRON CG45002
3L	12503722	3L_12503722_SNP [dm3] 3L_12510622_SNP [dm6]	T	C	2.841e^-4	0.843	SYNONYMOUS_CODING sti
3L	3978205	3L_3978205_SNP [dm3] 3L_3978205_SNP [dm6]	A	T	2.847e^-4	0.843	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20519100	X_20519100_SNP [dm3] X_20648073_SNP [dm6]	A	C	2.850e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1
3R	6467787	3R_6467787_SNP [dm3] 3R_10642065_SNP [dm6]	G	A	2.861e^-4	0.843	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10710358	3L_10710358_SNP [dm3] 3L_10717258_SNP [dm6]	C	G	2.862e^-4	0.843	INTERGENIC
X	13174792	X_13174792_DEL [dm3] X_13280759_DEL [dm6]	GAAAAACTTAGG...	G	2.867e^-4	0.843	INTRON HDAC4
2L	21772349	2L_21772349_SNP [dm3] 2L_21772349_SNP [dm6]	G	A	2.870e^-4	0.843	INTRON CG31612
X	476104	X_476104_SNP [dm3] X_582071_SNP [dm6]	G	A	2.871e^-4	0.843	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3902790	3R_3902790_SNP [dm3] 3R_8077068_SNP [dm6]	A	C	2.880e^-4	0.843	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14161027	2R_14161027_SNP [dm3] 2R_18273522_SNP [dm6]	G	A	2.882e^-4	0.843	INTERGENIC
X	16946999	X_16946999_SNP [dm3] X_17052966_SNP [dm6]	A	T	2.884e^-4	0.843	INTRON CG45002
2R	10030909	2R_10030909_DEL [dm3] 2R_14143404_DEL [dm6]	TG	T	2.885e^-4	0.843	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17809016	3R_17809016_SNP [dm3] 3R_21983294_SNP [dm6]	T	C	2.899e^-4	0.843	INTRON Eip93F
3L	3974801	3L_3974801_INS [dm3] 3L_3974801_INS [dm6]	G	GTG	2.900e^-4	0.843	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	8241551	X_8241551_SNP [dm3] X_8347518_SNP [dm6]	A	G	2.900e^-4	0.843	INTRON nAChRalpha3
3L	6165576	3L_6165576_SNP [dm3] 3L_6172476_SNP [dm6]	G	A	2.905e^-4	0.843	SYNONYMOUS_CODING CG10289	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_sens
3L	12527754	3L_12527754_SNP [dm3] 3L_12534654_SNP [dm6]	A	T	2.914e^-4	0.845	UTR_5_PRIME CG10688 UPSTREAM Tsf2 DOWNSTREAM CG34242 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	18538330	2L_18538330_SNP [dm3] 2L_18538330_SNP [dm6]	A	G	2.919e^-4	0.845	INTRON Pde11	TF binding site mE1_TFBS_HSA
2R	16178648	2R_16178648_SNP [dm3] 2R_20291143_SNP [dm6]	A	G	2.928e^-4	0.845	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
X	490193	X_490193_SNP [dm3] X_596160_SNP [dm6]	G	T	2.929e^-4	0.845	INTRON CG13366 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8471644	3R_8471644_SNP [dm3] 3R_12645922_SNP [dm6]	A	G	2.935e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	1281183	2L_1281183_SNP [dm3] 2L_1281183_SNP [dm6]	C	A	2.936e^-4	0.845	INTRON robo3
2L	18483017	2L_18483017_SNP [dm3] 2L_18483017_SNP [dm6]	A	C	2.942e^-4	0.845	INTRON CG10283
2L	15090483	2L_15090483_SNP [dm3] 2L_15090483_SNP [dm6]	T	C	2.971e^-4	0.85	INTRON CG15270
3L	7760010	3L_7760010_SNP [dm3] 3L_7766910_SNP [dm6]	G	A	2.974e^-4	0.85	SYNONYMOUS_CODING Clk DOWNSTREAM CG32371
3L	17558667	3L_17558667_SNP [dm3] 3L_17565567_SNP [dm6]	T	C	2.980e^-4	0.85	NON_SYNONYMOUS_CODING Eip74EF DOWNSTREAM snoRNA:Me28S-A576
2R	10029516	2R_10029516_SNP [dm3] 2R_14142011_SNP [dm6]	C	T	2.980e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2L	2141038	2L_2141038_SNP [dm3] 2L_2141038_SNP [dm6]	C	T	2.984e^-4	0.85	SYNONYMOUS_CODING tho2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8523278	3R_8523278_SNP [dm3] 3R_12697556_SNP [dm6]	T	A	2.987e^-4	0.85	UPSTREAM Past1 DOWNSTREAM NijC INTRON Past1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	5624954	3L_5624954_SNP [dm3] 3L_5631854_SNP [dm6]	G	A	3.008e^-4	0.855	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
3L	14539390	3L_14539390_SNP [dm3] 3L_14546290_SNP [dm6]	A	C	3.021e^-4	0.855	INTRON CG9238	TF binding site BDTNP1_TFBS_dl
3R	15319247	3R_15319247_SNP [dm3] 3R_19493525_SNP [dm6]	A	T	3.029e^-4	0.855	INTRON Dys
3L	702279	3L_702279_SNP [dm3] 3L_702279_SNP [dm6]	T	C	3.031e^-4	0.855	INTERGENIC
3R	15973284	3R_15973284_SNP [dm3] 3R_20147562_SNP [dm6]	G	A	3.038e^-4	0.855	INTERGENIC
3R	17846059	3R_17846059_SNP [dm3] 3R_22020337_SNP [dm6]	C	G	3.052e^-4	0.855	NON_SYNONYMOUS_CODING CG6455 UPSTREAM CG6439	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14539921	3L_14539921_SNP [dm3] 3L_14546821_SNP [dm6]	C	T	3.055e^-4	0.855	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
X	17618071	X_17618071_SNP [dm3] X_17724038_SNP [dm6]	T	G	3.062e^-4	0.855	INTRON CG42684
2R	6637316	2R_6637316_SNP [dm3] 2R_10749811_SNP [dm6]	A	C	3.068e^-4	0.855	INTRON CG33144
3R	9034456	3R_9034456_SNP [dm3] 3R_13208734_SNP [dm6]	G	A	3.069e^-4	0.855	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25457875	3R_25457875_SNP [dm3] 3R_29632153_SNP [dm6]	G	A	3.075e^-4	0.855	SYNONYMOUS_CODING Dop1R2 UTR_3_PRIME Dop1R2	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1352307	2L_1352307_SNP [dm3] 2L_1352307_SNP [dm6]	T	C	3.077e^-4	0.855	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
2R	10218404	2R_10218404_SNP [dm3] 2R_14330899_SNP [dm6]	A	T	3.098e^-4	0.855	INTRON Shroom
2L	16904734	2L_16904734_SNP [dm3] 2L_16904734_SNP [dm6]	T	C	3.099e^-4	0.855	INTRON tweek
4	159773	4_159773_SNP [dm3] 4_139147_SNP [dm6]	A	G	3.099e^-4	0.855	INTRON CG32000	transposable element FlyBase
3R	10159969	3R_10159969_SNP [dm3] 3R_14334247_SNP [dm6]	A	T	3.101e^-4	0.855	INTRON NK7.1
2L	10015135	2L_10015135_SNP [dm3] 2L_10015135_SNP [dm6]	G	C	3.103e^-4	0.855	NON_SYNONYMOUS_CODING CG13131	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14094598	2L_14094598_SNP [dm3] 2L_14094598_SNP [dm6]	T	C	3.105e^-4	0.855	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12787124	2R_12787124_SNP [dm3] 2R_16899619_SNP [dm6]	G	A	3.113e^-4	0.855	SYNONYMOUS_CODING inaC
2L	13042150	2L_13042150_SNP [dm3] 2L_13042150_SNP [dm6]	G	T	3.115e^-4	0.855	INTRON CG9932
3R	18231581	3R_18231581_SNP [dm3] 3R_22405859_SNP [dm6]	G	A	3.121e^-4	0.855	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
3L	22126221	3L_22126221_SNP [dm3] 3L_22133121_SNP [dm6]	A	T	3.127e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	22035258	2L_22035258_DEL [dm3] 2L_22035258_DEL [dm6]	GCGATCCCAGCTCGACGTAC...	TG	3.128e^-4	0.855	INTERGENIC
3L	10710331	3L_10710331_INS [dm3] 3L_10717231_INS [dm6]	A	AAAA	3.131e^-4	0.855	INTERGENIC
3L	440171	3L_440171_SNP [dm3] 3L_440171_SNP [dm6]	C	A	3.136e^-4	0.855	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17995057	X_17995057_SNP [dm3] X_18101024_SNP [dm6]	C	A	3.138e^-4	0.855	UPSTREAM CG7192 & 1 other INTRON CG7192	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	7860582	3L_7860582_SNP [dm3] 3L_7867482_SNP [dm6]	C	T	3.138e^-4	0.855	UPSTREAM Pdp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1536984	3L_1536984_SNP [dm3] 3L_1536984_SNP [dm6]	G	A	3.144e^-4	0.855	UPSTREAM CG7852 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9017689	3R_9017689_SNP [dm3] 3R_13191967_SNP [dm6]	A	G	3.146e^-4	0.855	NON_SYNONYMOUS_CODING CG8141
3L	13705237	3L_13705237_SNP [dm3] 3L_13712137_SNP [dm6]	A	T	3.147e^-4	0.855	INTRON bru-3
3L	7685736	3L_7685736_SNP [dm3] 3L_7692636_SNP [dm6]	T	C	3.158e^-4	0.855	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
2L	14094538	2L_14094538_SNP [dm3] 2L_14094538_SNP [dm6]	A	C	3.159e^-4	0.855	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	728604	2L_728604_SNP [dm3] 2L_728604_SNP [dm6]	A	C	3.162e^-4	0.855	NON_SYNONYMOUS_CODING Hsp60B
2R	14687940	2R_14687940_SNP [dm3] 2R_18800435_SNP [dm6]	T	C	3.168e^-4	0.855	INTRON l_2_08717	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10066965	2L_10066965_SNP [dm3] 2L_10066965_SNP [dm6]	A	G	3.170e^-4	0.855	INTRON CG44153
4	299242	4_299242_SNP [dm3] 4_278616_SNP [dm6]	G	T	3.172e^-4	0.855	DOWNSTREAM Syt7 & 1 other INTERGENIC
3L	5300666	3L_5300666_SNP [dm3] 3L_5307566_SNP [dm6]	A	C	3.176e^-4	0.855	INTERGENIC
2R	6185270	2R_6185270_SNP [dm3] 2R_10297765_SNP [dm6]	A	T	3.176e^-4	0.855	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4615818	3R_4615818_SNP [dm3] 3R_8790096_SNP [dm6]	C	A	3.183e^-4	0.855	INTRON Pif1B & 1 other
3R	8953509	3R_8953509_SNP [dm3] 3R_13127787_SNP [dm6]	C	G	3.195e^-4	0.855	NON_SYNONYMOUS_CODING 2mit INTRON timeout
X	17176447	X_17176447_SNP [dm3] X_17282414_SNP [dm6]	C	A	3.198e^-4	0.855	UPSTREAM CG5445 INTRON CG8664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19159736	2L_19159736_SNP [dm3] 2L_19159736_SNP [dm6]	T	C	3.203e^-4	0.855	UPSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	9039840	3R_9039840_SNP [dm3] 3R_13214118_SNP [dm6]	A	T	3.211e^-4	0.855	NON_SYNONYMOUS_CODING CG8483	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26495261	3R_26495261_SNP [dm3] 3R_30669539_SNP [dm6]	T	G	3.212e^-4	0.855	INTERGENIC
2R	10217341	2R_10217341_DEL [dm3] 2R_14329836_DEL [dm6]	AG	A	3.235e^-4	0.855	INTRON Shroom	TF binding site mE1_TFBS_chinmo
3R	13398446	3R_13398446_SNP [dm3] 3R_17572724_SNP [dm6]	G	T	3.272e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10159982	3R_10159982_SNP [dm3] 3R_14334260_SNP [dm6]	G	C	3.274e^-4	0.855	INTRON NK7.1
3R	4439777	3R_4439777_DEL [dm3] 3R_8614055_DEL [dm6]	TCGACTGCCAGCT...	T	3.280e^-4	0.855	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2R	10105431	2R_10105431_SNP [dm3] 2R_14217926_SNP [dm6]	C	T	3.282e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11286611	2R_11286611_SNP [dm3] 2R_15399106_SNP [dm6]	C	T	3.284e^-4	0.855	INTERGENIC
2L	15757736	2L_15757736_SNP [dm3] 2L_15757736_SNP [dm6]	T	G	3.286e^-4	0.855	INTRON Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11696708	2L_11696708_DEL [dm3] 2L_11696708_DEL [dm6]	AAA	A	3.287e^-4	0.855	DOWNSTREAM CG4988 INTERGENIC
3L	1002331	3L_1002331_SNP [dm3] 3L_1002331_SNP [dm6]	G	A	3.291e^-4	0.855	INTRON trio
X	9176144	X_9176144_SNP [dm3] X_9282111_SNP [dm6]	C	G	3.293e^-4	0.855	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6967840	2R_6967840_SNP [dm3] 2R_11080335_SNP [dm6]	G	T	3.295e^-4	0.855	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	13979414	3L_13979414_SNP [dm3] 3L_13986314_SNP [dm6]	T	A	3.297e^-4	0.855	UPSTREAM CG17362 INTRON CG17364	TF binding site mE1_TFBS_cad
3L	5624829	3L_5624829_SNP [dm3] 3L_5631729_SNP [dm6]	A	C	3.297e^-4	0.855	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13783200	3L_13783200_SNP [dm3] 3L_13790100_SNP [dm6]	C	T	3.300e^-4	0.855	INTRON bru-3
X	18354639	X_18354639_SNP [dm3] X_18460606_SNP [dm6]	G	A	3.301e^-4	0.855	UPSTREAM CR43842 & 1 other INTRON CG32547
3R	8967508	3R_8967508_SNP [dm3] 3R_13141786_SNP [dm6]	G	A	3.304e^-4	0.855	INTRON timeout & 2 others
3R	9017173	3R_9017173_SNP [dm3] 3R_13191451_SNP [dm6]	G	T	3.328e^-4	0.855	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12527748	2L_12527748_SNP [dm3] 2L_12527748_SNP [dm6]	T	C	3.329e^-4	0.855	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14773615	3L_14773615_DEL [dm3] 3L_14780515_DEL [dm6]	CGGC	C	3.329e^-4	0.855	INTRON bmm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	7440155	2R_7440155_SNP [dm3] 2R_11552650_SNP [dm6]	C	T	3.334e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7440156	2R_7440156_SNP [dm3] 2R_11552651_SNP [dm6]	C	G	3.334e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10468995	3L_10468995_SNP [dm3] 3L_10475895_SNP [dm6]	G	A	3.336e^-4	0.855	INTERGENIC
2L	9681453	2L_9681453_SNP [dm3] 2L_9681453_SNP [dm6]	T	C	3.337e^-4	0.855	DOWNSTREAM Pka-C1 INTERGENIC
2R	11286566	2R_11286566_SNP [dm3] 2R_15399061_SNP [dm6]	A	T	3.341e^-4	0.855	INTERGENIC
2L	1641416	2L_1641416_INS [dm3] 2L_1641416_INS [dm6]	T	TTTT	3.351e^-4	0.855	INTERGENIC
2L	2462125	2L_2462125_SNP [dm3] 2L_2462125_SNP [dm6]	C	T	3.353e^-4	0.855	UPSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11862702	2R_11862702_SNP [dm3] 2R_15975197_SNP [dm6]	A	T	3.363e^-4	0.855	SYNONYMOUS_CODING Strn-Mlck
X	16947237	X_16947237_SNP [dm3] X_17053204_SNP [dm6]	C	G	3.363e^-4	0.855	INTRON CG45002
3R	9312413	3R_9312413_SNP [dm3] 3R_13486691_SNP [dm6]	T	A	3.372e^-4	0.855	INTERGENIC
X	3089800	X_3089800_SNP [dm3] X_3195767_SNP [dm6]	A	G	3.375e^-4	0.855	INTRON dnc	TF binding site mE1_TFBS_HSA
3L	5645928	3L_5645928_SNP [dm3] 3L_5652828_SNP [dm6]	A	G	3.377e^-4	0.855	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26499544	3R_26499544_SNP [dm3] 3R_30673822_SNP [dm6]	T	A	3.377e^-4	0.855	INTERGENIC
2L	19030145	2L_19030145_SNP [dm3] 2L_19030145_SNP [dm6]	G	C	3.380e^-4	0.855	SYNONYMOUS_CODING Side DOWNSTREAM hk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6794167	3L_6794167_SNP [dm3] 3L_6801067_SNP [dm6]	C	T	3.385e^-4	0.855	INTERGENIC
3L	9400776	3L_9400776_SNP [dm3] 3L_9407676_SNP [dm6]	G	T	3.390e^-4	0.855	UTR_3_PRIME CG4022 DOWNSTREAM CG4022
X	17175095	X_17175095_SNP [dm3] X_17281062_SNP [dm6]	G	T	3.390e^-4	0.855	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
2R	10218393	2R_10218393_SNP [dm3] 2R_14330888_SNP [dm6]	A	C	3.392e^-4	0.855	INTRON Shroom
2L	18559973	2L_18559973_SNP [dm3] 2L_18559973_SNP [dm6]	G	A	3.404e^-4	0.855	INTRON Pde11
3R	8938554	3R_8938554_SNP [dm3] 3R_13112832_SNP [dm6]	A	G	3.410e^-4	0.855	INTRON timeout
2R	10185018	2R_10185018_SNP [dm3] 2R_14297513_SNP [dm6]	G	A	3.415e^-4	0.855	INTRON Ih
3L	12715400	3L_12715400_SNP [dm3] 3L_12722300_SNP [dm6]	G	A	3.419e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24741399	3R_24741399_SNP [dm3] 3R_28915677_SNP [dm6]	T	G	3.421e^-4	0.855	INTRON Doa
3L	13575701	3L_13575701_SNP [dm3] 3L_13582601_SNP [dm6]	G	T	3.424e^-4	0.855	INTRON bru-3
3R	27361001	3R_27361001_SNP [dm3] 3R_31535279_SNP [dm6]	G	T	3.427e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9033512	3R_9033512_SNP [dm3] 3R_13207790_SNP [dm6]	G	C	3.430e^-4	0.855	DOWNSTREAM CG8483 INTERGENIC
2R	12412556	2R_12412556_SNP [dm3] 2R_16525051_SNP [dm6]	A	C	3.432e^-4	0.855	INTRON Sema-2a
2R	11735502	2R_11735502_SNP [dm3] 2R_15847997_SNP [dm6]	A	G	3.434e^-4	0.855	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15769750	2L_15769750_SNP [dm3] 2L_15769750_SNP [dm6]	C	T	3.438e^-4	0.855	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6440881	X_6440881_SNP [dm3] X_6546848_SNP [dm6]	G	A	3.442e^-4	0.855	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13705198	3L_13705198_SNP [dm3] 3L_13712098_SNP [dm6]	G	C	3.442e^-4	0.855	INTRON bru-3
3R	12366997	3R_12366997_SNP [dm3] 3R_16541275_SNP [dm6]	A	G	3.444e^-4	0.855	INTRON CG42342
X	2757420	X_2757420_SNP [dm3] X_2863387_SNP [dm6]	A	G	3.446e^-4	0.855	INTRON kirre
X	14042362	X_14042362_SNP [dm3] X_14148329_SNP [dm6]	A	G	3.452e^-4	0.855	INTERGENIC
3R	20934895	3R_20934895_SNP [dm3] 3R_25109173_SNP [dm6]	C	T	3.453e^-4	0.855	UPSTREAM CG34027 DOWNSTREAM CG13650 INTERGENIC
2R	14121756	2R_14121756_SNP [dm3] 2R_18234251_SNP [dm6]	C	T	3.456e^-4	0.855	NON_SYNONYMOUS_CODING fj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
X	953524	X_953524_SNP [dm3] X_1059491_SNP [dm6]	G	C	3.471e^-4	0.856	INTRON CR44779
3R	9451418	3R_9451418_SNP [dm3] 3R_13625696_SNP [dm6]	T	A	3.478e^-4	0.856	INTERGENIC
2R	12387429	2R_12387429_SNP [dm3] 2R_16499924_SNP [dm6]	C	T	3.482e^-4	0.856	UPSTREAM Sema-2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2505579	2L_2505579_SNP [dm3] 2L_2505579_SNP [dm6]	T	G	3.495e^-4	0.856	INTERGENIC
2R	12542111	2R_12542111_SNP [dm3] 2R_16654606_SNP [dm6]	C	T	3.497e^-4	0.856	NON_SYNONYMOUS_CODING Nach DOWNSTREAM Picot
X	16011808	X_16011808_SNP [dm3] X_16117775_SNP [dm6]	G	T	3.503e^-4	0.856	DOWNSTREAM disco-r INTERGENIC
3R	10345867	3R_10345867_SNP [dm3] 3R_14520145_SNP [dm6]	T	C	3.509e^-4	0.856	UPSTREAM Cyp313a1 INTRON Pde6
X	4079277	X_4079277_DEL [dm3] X_4185244_DEL [dm6]	TTAAAGGCTGAATGCAAATT...	T	3.513e^-4	0.856	INTRON Fas2
2L	16439833	2L_16439833_SNP [dm3] 2L_16439833_SNP [dm6]	G	A	3.513e^-4	0.856	INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	18004473	X_18004473_INS [dm3] X_18110440_INS [dm6]	T	TT	3.517e^-4	0.856	INTRON wupA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11381439	2R_11381439_SNP [dm3] 2R_15493934_SNP [dm6]	G	C	3.522e^-4	0.856	INTRON CG12964
3L	9298295	3L_9298295_SNP [dm3] 3L_9305195_SNP [dm6]	G	C	3.538e^-4	0.856	INTERGENIC
3R	16172746	3R_16172746_SNP [dm3] 3R_20347024_SNP [dm6]	A	C	3.543e^-4	0.856	INTERGENIC
2R	12788303	2R_12788303_SNP [dm3] 2R_16900798_SNP [dm6]	A	T	3.543e^-4	0.856	INTRON inaC
3R	8954311	3R_8954311_SNP [dm3] 3R_13128589_SNP [dm6]	C	G	3.552e^-4	0.856	INTRON timeout & 1 other
2L	4915843	2L_4915843_SNP [dm3] 2L_4915843_SNP [dm6]	T	A	3.556e^-4	0.856	UPSTREAM hoe1 INTRON hoe1
2L	19028471	2L_19028471_SNP [dm3] 2L_19028471_SNP [dm6]	G	A	3.557e^-4	0.856	INTRON Side
3R	14041698	3R_14041698_SNP [dm3] 3R_18215976_SNP [dm6]	G	A	3.560e^-4	0.856	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12129823	2R_12129823_SNP [dm3] 2R_16242318_SNP [dm6]	T	C	3.564e^-4	0.856	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
3L	19262452	3L_19262452_SNP [dm3] 3L_19269352_SNP [dm6]	A	T	3.564e^-4	0.856	UTR_5_PRIME CG14085 UPSTREAM CG9629 DOWNSTREAM CG14088
3R	10364011	3R_10364011_SNP [dm3] 3R_14538289_SNP [dm6]	G	C	3.568e^-4	0.856	INTRON Pde6
2R	952567	2R_952567_SNP [dm3] 2R_5065062_SNP [dm6]	T	G	3.569e^-4	0.856	DOWNSTREAM TpnC41C INTERGENIC
X	5865881	X_5865881_SNP [dm3] X_5971848_SNP [dm6]	A	G	3.578e^-4	0.856	INTRON Grip
3L	22515882	3L_22515882_SNP [dm3] 3L_22522782_SNP [dm6]	G	C	3.581e^-4	0.856	INTERGENIC
2L	18376322	2L_18376322_SNP [dm3] 2L_18376322_SNP [dm6]	T	C	3.595e^-4	0.856	INTRON Fas3
3R	1140974	3R_1140974_SNP [dm3] 3R_5315252_SNP [dm6]	G	A	3.597e^-4	0.856	INTRON mtd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5684287	X_5684287_SNP [dm3] X_5790254_SNP [dm6]	T	G	3.600e^-4	0.856	SYNONYMOUS_CODING CG15767 UPSTREAM mir-4963 DOWNSTREAM CG42699 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14717841	3R_14717841_SNP [dm3] 3R_18892119_SNP [dm6]	T	A	3.600e^-4	0.856	INTERGENIC
2L	4766134	2L_4766134_SNP [dm3] 2L_4766134_SNP [dm6]	G	C	3.608e^-4	0.856	INTRON CG15630
3R	7511128	3R_7511128_SNP [dm3] 3R_11685406_SNP [dm6]	T	C	3.609e^-4	0.856	SPLICE_SITE_REGION CG6834 INTRON CG6834	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9038276	3R_9038276_SNP [dm3] 3R_13212554_SNP [dm6]	T	A	3.609e^-4	0.856	INTRON CG8483
3R	10341647	3R_10341647_SNP [dm3] 3R_14515925_SNP [dm6]	C	T	3.612e^-4	0.856	SYNONYMOUS_CODING Pde6
2R	13226983	2R_13226983_SNP [dm3] 2R_17339478_SNP [dm6]	T	A	3.613e^-4	0.856	INTRON mbl
X	11807312	X_11807312_SNP [dm3] X_11913279_SNP [dm6]	G	A	3.620e^-4	0.856	INTRON pot
2L	15779226	2L_15779226_SNP [dm3] 2L_15779226_SNP [dm6]	A	C	3.630e^-4	0.856	INTERGENIC
2L	6253968	2L_6253968_SNP [dm3] 2L_6253968_SNP [dm6]	T	C	3.639e^-4	0.856	INTRON Ddr	TF binding site mE1_TFBS_Trl
3R	15973100	3R_15973100_SNP [dm3] 3R_20147378_SNP [dm6]	G	A	3.640e^-4	0.856	INTERGENIC
3L	10465626	3L_10465626_SNP [dm3] 3L_10472526_SNP [dm6]	G	A	3.643e^-4	0.856	INTERGENIC
2L	1578100	2L_1578100_SNP [dm3] 2L_1578100_SNP [dm6]	C	A	3.646e^-4	0.856	INTRON haf
3R	26368835	3R_26368835_SNP [dm3] 3R_30543113_SNP [dm6]	C	T	3.653e^-4	0.856	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5592466	3R_5592466_SNP [dm3] 3R_9766744_SNP [dm6]	T	G	3.655e^-4	0.856	DOWNSTREAM CG8478 INTRON MED6	TF binding site mE1_TFBS_sens
2L	1671696	2L_1671696_SNP [dm3] 2L_1671696_SNP [dm6]	C	T	3.656e^-4	0.856	INTRON chinmo
2R	7395527	2R_7395527_SNP [dm3] 2R_11508022_SNP [dm6]	T	G	3.660e^-4	0.856	UTR_3_PRIME inv DOWNSTREAM inv
3L	986498	3L_986498_SNP [dm3] 3L_986498_SNP [dm6]	A	T	3.669e^-4	0.856	DOWNSTREAM Glut1 INTRON Glut1
2R	9075873	2R_9075873_SNP [dm3] 2R_13188368_SNP [dm6]	C	G	3.670e^-4	0.856	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25929610	3R_25929610_SNP [dm3] 3R_30103888_SNP [dm6]	G	C	3.670e^-4	0.856	INTRON sima
3L	509159	3L_509159_SNP [dm3] 3L_509159_SNP [dm6]	A	G	3.684e^-4	0.856	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3589356	2R_3589356_SNP [dm3] 2R_7701851_SNP [dm6]	G	A	3.687e^-4	0.856	UTR_3_PRIME CG30496 INTRON CG30493
2R	11034318	2R_11034318_SNP [dm3] 2R_15146813_SNP [dm6]	A	C	3.691e^-4	0.856	NON_SYNONYMOUS_CODING CG8089	TF binding site mE1_TFBS_sens
3R	26303107	3R_26303107_SNP [dm3] 3R_30477385_SNP [dm6]	C	T	3.692e^-4	0.856	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	8477372	3R_8477372_SNP [dm3] 3R_12651650_SNP [dm6]	T	A	3.693e^-4	0.856	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3L	18033282	3L_18033282_SNP [dm3] 3L_18040182_SNP [dm6]	G	A	3.712e^-4	0.859	UPSTREAM CG32192 INTRON Eip75B
3L	2354692	3L_2354692_SNP [dm3] 3L_2354692_SNP [dm6]	C	T	3.716e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9582346	3L_9582346_DEL [dm3] 3L_9589246_DEL [dm6]	CATTCCC	C	3.719e^-4	0.859	INTRON CG42673
X	11735019	X_11735019_SNP [dm3] X_11840986_SNP [dm6]	T	C	3.728e^-4	0.86	SYNONYMOUS_CODING Cyp28c1	TF binding site mE1_TFBS_chinmo
2R	9978316	2R_9978316_SNP [dm3] 2R_14090811_SNP [dm6]	T	C	3.747e^-4	0.862	UPSTREAM CG42288 INTRON Prosap & 1 other
2L	15003125	2L_15003125_SNP [dm3] 2L_15003125_SNP [dm6]	A	G	3.750e^-4	0.862	INTERGENIC
3L	3045066	3L_3045066_SNP [dm3] 3L_3045066_SNP [dm6]	C	T	3.753e^-4	0.862	SYNONYMOUS_CODING scramb2 DOWNSTREAM Jafrac2	TF binding site mE1_TFBS_HSA
2L	13043910	2L_13043910_SNP [dm3] 2L_13043910_SNP [dm6]	G	T	3.753e^-4	0.862	INTRON CG9932
2L	17376313	2L_17376313_SNP [dm3] 2L_17376313_SNP [dm6]	G	A	3.759e^-4	0.862	INTRON Lrch
3L	9582427	3L_9582427_SNP [dm3] 3L_9589327_SNP [dm6]	T	G	3.764e^-4	0.862	INTRON CG42673
3L	3134334	3L_3134334_INS [dm3] 3L_3134334_INS [dm6]	A	AA	3.771e^-4	0.862	UPSTREAM CG11537 INTRON CG11537
3L	3944745	3L_3944745_SNP [dm3] 3L_3944745_SNP [dm6]	C	T	3.772e^-4	0.862	INTRON CG14982	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3R	13465433	3R_13465433_SNP [dm3] 3R_17639711_SNP [dm6]	A	G	3.782e^-4	0.863	DOWNSTREAM CR45222 INTRON CG43175
X	17995561	X_17995561_SNP [dm3] X_18101528_SNP [dm6]	A	T	3.793e^-4	0.863	UPSTREAM Taf8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3R	9638415	3R_9638415_SNP [dm3] 3R_13812693_SNP [dm6]	T	C	3.794e^-4	0.863	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12052379	3R_12052379_SNP [dm3] 3R_16226657_SNP [dm6]	C	A	3.797e^-4	0.863	INTRON tara
3R	9040960	3R_9040960_SNP [dm3] 3R_13215238_SNP [dm6]	T	A	3.804e^-4	0.863	UPSTREAM CG8483 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13141236	2R_13141236_SNP [dm3] 2R_17253731_SNP [dm6]	C	T	3.807e^-4	0.863	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
X	4047567	X_4047567_SNP [dm3] X_4153534_SNP [dm6]	G	A	3.811e^-4	0.863	INTRON Fas2	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	6876905	3R_6876905_SNP [dm3] 3R_11051183_SNP [dm6]	G	T	3.819e^-4	0.864	INTERGENIC
X	18438146	X_18438146_SNP [dm3] X_18544113_SNP [dm6]	T	G	3.829e^-4	0.865	INTRON Bx
3R	13398001	3R_13398001_DEL [dm3] 3R_17572279_DEL [dm6]	CCTTTACTGTTTC...	C	3.845e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	16777795	2L_16777795_SNP [dm3] 2L_16777795_SNP [dm6]	C	G	3.848e^-4	0.865	INTRON Mhc
X	16947242	X_16947242_SNP [dm3] X_17053209_SNP [dm6]	A	G	3.858e^-4	0.865	INTRON CG45002
3R	6853153	3R_6853153_SNP [dm3] 3R_11027431_SNP [dm6]	T	A	3.861e^-4	0.865	INTRON CG34114
X	1667188	X_1667188_SNP [dm3] X_1773155_SNP [dm6]	A	G	3.861e^-4	0.865	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10833436	2L_10833436_INS [dm3] 2L_10833436_INS [dm6]	A	AA	3.877e^-4	0.865	INTRON Nos
2R	9906175	2R_9906175_SNP [dm3] 2R_14018670_SNP [dm6]	C	T	3.886e^-4	0.865	INTRON mam
2L	13041559	2L_13041559_SNP [dm3] 2L_13041559_SNP [dm6]	G	A	3.891e^-4	0.865	INTRON CG9932
3R	9942405	3R_9942405_SNP [dm3] 3R_14116683_SNP [dm6]	G	A	3.896e^-4	0.865	INTRON Kif19A
3L	2490335	3L_2490335_SNP [dm3] 3L_2490335_SNP [dm6]	A	G	3.897e^-4	0.865	START_GAINED CG1146 UTR_5_PRIME CG1146 UPSTREAM CG1146 INTRON CG45186 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6850533	3R_6850533_SNP [dm3] 3R_11024811_SNP [dm6]	A	T	3.901e^-4	0.865	INTRON CG34114
2L	6832236	2L_6832236_SNP [dm3] 2L_6832236_SNP [dm6]	G	A	3.906e^-4	0.865	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16458157	2L_16458157_SNP [dm3] 2L_16458157_SNP [dm6]	A	C	3.911e^-4	0.865	INTERGENIC	regulatory region REDfly_CRMs
3L	7869058	3L_7869058_SNP [dm3] 3L_7875958_SNP [dm6]	G	C	3.913e^-4	0.865	INTRON CG32365
X	8139436	X_8139436_SNP [dm3] X_8245403_SNP [dm6]	A	G	3.916e^-4	0.865	INTRON Trxr-1
3R	9027169	3R_9027169_SNP [dm3] 3R_13201447_SNP [dm6]	G	A	3.918e^-4	0.865	INTERGENIC
3R	9024385	3R_9024385_SNP [dm3] 3R_13198663_SNP [dm6]	G	C	3.920e^-4	0.865	INTERGENIC
2R	6185450	2R_6185450_SNP [dm3] 2R_10297945_SNP [dm6]	C	A	3.931e^-4	0.865	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12387064	X_12387064_SNP [dm3] X_12493031_SNP [dm6]	G	T	3.935e^-4	0.865	DOWNSTREAM Lsp1alpha INTERGENIC
3R	3889962	3R_3889962_SNP [dm3] 3R_8064240_SNP [dm6]	T	C	3.942e^-4	0.865	INTRON mAChR-B
2L	12436133	2L_12436133_SNP [dm3] 2L_12436133_SNP [dm6]	G	A	3.949e^-4	0.865	UPSTREAM Elf INTRON Elf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3L	13383871	3L_13383871_SNP [dm3] 3L_13390771_SNP [dm6]	T	C	3.950e^-4	0.865	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	12215370	X_12215370_SNP [dm3] X_12321337_SNP [dm6]	A	T	3.950e^-4	0.865	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
3R	14033325	3R_14033325_SNP [dm3] 3R_18207603_SNP [dm6]	T	C	3.954e^-4	0.865	INTRON CG7985
2L	12390126	2L_12390126_SNP [dm3] 2L_12390126_SNP [dm6]	A	T	3.954e^-4	0.865	INTRON bru-2
2L	17390041	2L_17390041_SNP [dm3] 2L_17390041_SNP [dm6]	C	G	3.960e^-4	0.865	INTRON CLIP-190
2R	6677946	2R_6677946_SNP [dm3] 2R_10790441_SNP [dm6]	T	C	3.961e^-4	0.865	INTRON CG33144	TF binding site mE1_TFBS_inv
2R	15927408	2R_15927408_SNP [dm3] 2R_20039903_SNP [dm6]	G	C	3.962e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3L	14177958	3L_14177958_SNP [dm3] 3L_14184858_SNP [dm6]	T	C	3.978e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13705240	3L_13705240_SNP [dm3] 3L_13712140_SNP [dm6]	A	C	3.983e^-4	0.865	INTRON bru-3
3L	11468666	3L_11468666_SNP [dm3] 3L_11475566_SNP [dm6]	T	A	3.985e^-4	0.865	DOWNSTREAM Vha16-2 INTERGENIC
X	19352731	X_19352731_SNP [dm3] X_19458698_SNP [dm6]	G	C	3.986e^-4	0.865	INTRON kek5	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	10844961	2R_10844961_INS [dm3] 2R_14957456_INS [dm6]	G	AAAGTGT	3.995e^-4	0.865	INTRON aPKC
3R	8950409	3R_8950409_SNP [dm3] 3R_13124687_SNP [dm6]	G	T	3.998e^-4	0.865	UTR_3_PRIME 2mit INTRON timeout
3R	22897850	3R_22897850_SNP [dm3] 3R_27072128_SNP [dm6]	G	T	3.999e^-4	0.865	INTERGENIC
3L	14104094	3L_14104094_SNP [dm3] 3L_14110994_SNP [dm6]	T	C	3.999e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	10585763	X_10585763_SNP [dm3] X_10691730_SNP [dm6]	T	A	4.002e^-4	0.865	INTRON X11Lbeta
3L	8012196	3L_8012196_SNP [dm3] 3L_8019096_SNP [dm6]	G	A	4.007e^-4	0.865	INTRON nmo
3R	22498375	3R_22498375_SNP [dm3] 3R_26672653_SNP [dm6]	A	G	4.011e^-4	0.865	INTRON beat-VII
3R	9033508	3R_9033508_SNP [dm3] 3R_13207786_SNP [dm6]	C	A	4.014e^-4	0.865	DOWNSTREAM CG8483 INTERGENIC
3L	5684049	3L_5684049_SNP [dm3] 3L_5690949_SNP [dm6]	C	A	4.027e^-4	0.865	UPSTREAM sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13226871	2R_13226871_SNP [dm3] 2R_17339366_SNP [dm6]	A	T	4.027e^-4	0.865	INTRON mbl
3L	1016119	3L_1016119_SNP [dm3] 3L_1016119_SNP [dm6]	T	C	4.031e^-4	0.865	INTRON trio
3R	26921605	3R_26921605_SNP [dm3] 3R_31095883_SNP [dm6]	T	C	4.032e^-4	0.865	INTRON CG11317
2L	5866612	2L_5866612_SNP [dm3] 2L_5866612_SNP [dm6]	C	G	4.047e^-4	0.865	INTRON rau	TF binding site BDTNP1_TFBS_da
2R	12117050	2R_12117050_SNP [dm3] 2R_16229545_SNP [dm6]	C	T	4.053e^-4	0.865	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6588312	2R_6588312_SNP [dm3] 2R_10700807_SNP [dm6]	G	C	4.055e^-4	0.865	INTRON stan
3L	14852369	3L_14852369_SNP [dm3] 3L_14859269_SNP [dm6]	T	C	4.055e^-4	0.865	INTRON CG17839
3R	8363978	3R_8363978_SNP [dm3] 3R_12538256_SNP [dm6]	C	A	4.059e^-4	0.865	INTRON Octbeta3R
2L	16363235	2L_16363235_SNP [dm3] 2L_16363235_SNP [dm6]	C	T	4.062e^-4	0.865	INTERGENIC
2R	6056104	2R_6056104_SNP [dm3] 2R_10168599_SNP [dm6]	C	A	4.066e^-4	0.865	INTRON KCNQ
2R	16175651	2R_16175651_DEL [dm3] 2R_20288146_DEL [dm6]	GC	G	4.069e^-4	0.865	FRAME_SHIFT CG34199 DOWNSTREAM Cpr56F
3L	9626596	3L_9626596_SNP [dm3] 3L_9633496_SNP [dm6]	C	T	4.075e^-4	0.866	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3R	10349630	3R_10349630_SNP [dm3] 3R_14523908_SNP [dm6]	T	C	4.084e^-4	0.866	DOWNSTREAM Cyp313a1 INTRON Pde6
X	8240645	X_8240645_SNP [dm3] X_8346612_SNP [dm6]	T	G	4.086e^-4	0.866	INTRON nAChRalpha3
2R	10163812	2R_10163812_SNP [dm3] 2R_14276307_SNP [dm6]	A	T	4.097e^-4	0.866	UTR_5_PRIME Ih DOWNSTREAM conv
2L	22001365	2L_22001365_SNP [dm3] 2L_22001365_SNP [dm6]	A	G	4.098e^-4	0.866	UPSTREAM CR44916 INTERGENIC
3R	8363729	3R_8363729_SNP [dm3] 3R_12538007_SNP [dm6]	G	T	4.102e^-4	0.866	INTRON Octbeta3R
3R	20934898	3R_20934898_SNP [dm3] 3R_25109176_SNP [dm6]	A	C	4.112e^-4	0.867	UPSTREAM CG34027 DOWNSTREAM CG13650 INTERGENIC
X	19445486	X_19445486_SNP [dm3] X_19551453_SNP [dm6]	G	A	4.115e^-4	0.867	UPSTREAM mir-973 & 1 other DOWNSTREAM mir-972 INTERGENIC
2L	18132494	2L_18132494_SNP [dm3] 2L_18132494_SNP [dm6]	A	G	4.117e^-4	0.867	SYNONYMOUS_CODING kel UTR_3_PRIME kel
2R	10153908	2R_10153908_SNP [dm3] 2R_14266403_SNP [dm6]	A	G	4.142e^-4	0.868	INTRON CG8547
2L	14550463	2L_14550463_SNP [dm3] 2L_14550463_SNP [dm6]	C	T	4.147e^-4	0.868	EXON CR44853	TF binding site BDTNP1_TFBS_twi
2L	20229534	2L_20229534_SNP [dm3] 2L_20229534_SNP [dm6]	T	A	4.157e^-4	0.868	INTERGENIC
X	17175356	X_17175356_SNP [dm3] X_17281323_SNP [dm6]	G	A	4.161e^-4	0.868	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10447272	2R_10447272_SNP [dm3] 2R_14559767_SNP [dm6]	C	G	4.163e^-4	0.868	INTRON ttv
2R	10774254	2R_10774254_SNP [dm3] 2R_14886749_SNP [dm6]	T	G	4.169e^-4	0.868	SYNONYMOUS_CODING Cyp6a21 DOWNSTREAM Cyp6a8
2L	4946344	2L_4946344_SNP [dm3] 2L_4946344_SNP [dm6]	G	C	4.170e^-4	0.868	UPSTREAM mRpL24 INTRON betaggt-I
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	4.186e^-4	0.868	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3L	3944727	3L_3944727_SNP [dm3] 3L_3944727_SNP [dm6]	A	T	4.187e^-4	0.868	INTRON CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2R	11886249	2R_11886249_SNP [dm3] 2R_15998744_SNP [dm6]	C	T	4.188e^-4	0.868	INTRON ATPCL
3R	4257113	3R_4257113_SNP [dm3] 3R_8431391_SNP [dm6]	A	T	4.191e^-4	0.868	INTRON CG45263
X	12187154	X_12187154_SNP [dm3] X_12293121_SNP [dm6]	C	T	4.201e^-4	0.868	INTRON Ten-a
3R	14033319	3R_14033319_SNP [dm3] 3R_18207597_SNP [dm6]	T	A	4.202e^-4	0.868	INTRON CG7985
X	1270697	X_1270697_SNP [dm3] X_1376664_SNP [dm6]	G	A	4.206e^-4	0.868	INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9899483	3R_9899483_SNP [dm3] 3R_14073761_SNP [dm6]	C	T	4.215e^-4	0.868	INTRON foxo
2L	12490383	2L_12490383_SNP [dm3] 2L_12490383_SNP [dm6]	G	C	4.219e^-4	0.868	INTRON bun
2R	10033819	2R_10033819_SNP [dm3] 2R_14146314_SNP [dm6]	G	A	4.219e^-4	0.868	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16946993	X_16946993_SNP [dm3] X_17052960_SNP [dm6]	T	A	4.223e^-4	0.868	INTRON CG45002
3L	14539820	3L_14539820_DEL [dm3] 3L_14546720_DEL [dm6]	CTCC	C	4.225e^-4	0.868	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
2R	15071642	2R_15071642_DEL [dm3] 2R_19184137_DEL [dm6]	TT	T	4.226e^-4	0.868	INTRON hppy
2L	2572456	2L_2572456_SNP [dm3] 2L_2572456_SNP [dm6]	C	G	4.228e^-4	0.868	SYNONYMOUS_CODING Cyp309a2 DOWNSTREAM Rad1 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	6818582	2L_6818582_SNP [dm3] 2L_6818582_SNP [dm6]	C	T	4.229e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14033233	3R_14033233_SNP [dm3] 3R_18207511_SNP [dm6]	A	T	4.245e^-4	0.868	INTRON CG7985
2R	10020124	2R_10020124_SNP [dm3] 2R_14132619_SNP [dm6]	C	T	4.252e^-4	0.868	INTRON Prosap	TF binding site mE1_TFBS_inv
3L	7283169	3L_7283169_SNP [dm3] 3L_7290069_SNP [dm6]	G	T	4.256e^-4	0.868	INTRON unc-13-4A
3L	10694793	3L_10694793_SNP [dm3] 3L_10701693_SNP [dm6]	C	T	4.265e^-4	0.868	INTERGENIC
3R	26600800	3R_26600800_SNP [dm3] 3R_30775078_SNP [dm6]	T	G	4.269e^-4	0.868	INTRON zfh1	TF binding site mE1_TFBS_cad
3L	14209886	3L_14209886_SNP [dm3] 3L_14216786_SNP [dm6]	A	T	4.271e^-4	0.868	INTRON nuf
2L	17994056	2L_17994056_SNP [dm3] 2L_17994056_SNP [dm6]	T	A	4.274e^-4	0.868	EXON CR44767
3R	1245899	3R_1245899_SNP [dm3] 3R_5420177_SNP [dm6]	A	T	4.280e^-4	0.868	INTRON CG14669
3R	17001253	3R_17001253_SNP [dm3] 3R_21175531_SNP [dm6]	T	C	4.282e^-4	0.868	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3692606	3L_3692606_SNP [dm3] 3L_3692606_SNP [dm6]	G	A	4.284e^-4	0.868	INTERGENIC
X	17177932	X_17177932_SNP [dm3] X_17283899_SNP [dm6]	A	G	4.284e^-4	0.868	SYNONYMOUS_CODING CG8661 INTRON CG5445
2L	13041097	2L_13041097_SNP [dm3] 2L_13041097_SNP [dm6]	T	A	4.287e^-4	0.868	INTRON CG9932
3R	6992700	3R_6992700_SNP [dm3] 3R_11166978_SNP [dm6]	C	T	4.289e^-4	0.868	NON_SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
2R	16250936	2R_16250936_SNP [dm3] 2R_20363431_SNP [dm6]	C	T	4.291e^-4	0.868	INTERGENIC
2R	16250931	2R_16250931_SNP [dm3] 2R_20363426_SNP [dm6]	A	G	4.304e^-4	0.868	INTERGENIC
2L	5814263	2L_5814263_SNP [dm3] 2L_5814263_SNP [dm6]	G	T	4.304e^-4	0.868	INTERGENIC
3R	9033505	3R_9033505_SNP [dm3] 3R_13207783_SNP [dm6]	G	A	4.315e^-4	0.868	DOWNSTREAM CG8483 INTERGENIC
X	13573182	X_13573182_SNP [dm3] X_13679149_SNP [dm6]	T	G	4.317e^-4	0.868	SYNONYMOUS_CODING CG12177	TF binding site BDTNP1_TFBS_twi
3R	25630964	3R_25630964_SNP [dm3] 3R_29805242_SNP [dm6]	G	A	4.318e^-4	0.868	SYNONYMOUS_CODING ncd DOWNSTREAM CG7789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9098264	2R_9098264_SNP [dm3] 2R_13210759_SNP [dm6]	G	C	4.323e^-4	0.868	UTR_5_PRIME CG34312 DOWNSTREAM FLASH INTRON CG30058 & 2 others
2R	11140814	2R_11140814_SNP [dm3] 2R_15253309_SNP [dm6]	A	G	4.330e^-4	0.868	INTRON scb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20180461	2R_20180461_SNP [dm3] 2R_24292938_SNP [dm6]	G	A	4.333e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18715446	2R_18715446_SNP [dm3] 2R_22827923_SNP [dm6]	T	C	4.344e^-4	0.868	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
X	11087359	X_11087359_SNP [dm3] X_11193326_SNP [dm6]	G	C	4.344e^-4	0.868	EXON CR44765
X	1418170	X_1418170_SNP [dm3] X_1524137_SNP [dm6]	C	T	4.368e^-4	0.868	UTR_3_PRIME Mur2B	TF binding site mE1_TFBS_chinmo
X	17410889	X_17410889_SNP [dm3] X_17516856_SNP [dm6]	C	T	4.371e^-4	0.868	INTRON CG43658
2R	19016586	2R_19016586_SNP [dm3] 2R_23129063_SNP [dm6]	C	T	4.376e^-4	0.868	SPLICE_SITE_REGION CG3215 UPSTREAM CR44455 DOWNSTREAM CR44456 INTRON CG3215
3L	11925839	3L_11925839_SNP [dm3] 3L_11932739_SNP [dm6]	A	C	4.379e^-4	0.868	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14539759	3L_14539759_DEL [dm3] 3L_14546659_DEL [dm6]	TTTCGCAGTTTTATAAGAAA...	T	4.381e^-4	0.868	INTRON CG9238	TF binding site BDTNP1_TFBS_Med
3L	13979420	3L_13979420_SNP [dm3] 3L_13986320_SNP [dm6]	C	A	4.383e^-4	0.868	UPSTREAM CG17362 INTRON CG17364	TF binding site mE1_TFBS_cad
3R	9907587	3R_9907587_SNP [dm3] 3R_14081865_SNP [dm6]	C	T	4.384e^-4	0.868	SYNONYMOUS_CODING foxo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12122570	3L_12122570_SNP [dm3] 3L_12129470_SNP [dm6]	G	A	4.391e^-4	0.868	NON_SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9625520	3L_9625520_SNP [dm3] 3L_9632420_SNP [dm6]	G	T	4.394e^-4	0.868	SYNONYMOUS_CODING fry DOWNSTREAM CG8336	TF binding site mE1_TFBS_cad
3L	15727542	3L_15727542_SNP [dm3] 3L_15734442_SNP [dm6]	G	T	4.396e^-4	0.868	INTERGENIC
3R	26120287	3R_26120287_SNP [dm3] 3R_30294565_SNP [dm6]	G	C	4.396e^-4	0.868	INTRON hdc
2L	4235084	2L_4235084_SNP [dm3] 2L_4235084_SNP [dm6]	G	T	4.402e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8964903	2R_8964903_SNP [dm3] 2R_13077398_SNP [dm6]	A	G	4.403e^-4	0.868	INTRON Drl-2	TF binding site mE1_TFBS_cad
3R	9033085	3R_9033085_SNP [dm3] 3R_13207363_SNP [dm6]	A	G	4.407e^-4	0.868	INTERGENIC
3R	22786915	3R_22786915_SNP [dm3] 3R_26961193_SNP [dm6]	T	C	4.411e^-4	0.868	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
3R	10345983	3R_10345983_SNP [dm3] 3R_14520261_SNP [dm6]	G	A	4.412e^-4	0.868	UPSTREAM Cyp313a1 INTRON Pde6
3R	10368786	3R_10368786_SNP [dm3] 3R_14543064_SNP [dm6]	A	C	4.418e^-4	0.868	INTRON Pde6
3R	4707402	3R_4707402_SNP [dm3] 3R_8881680_SNP [dm6]	T	G	4.420e^-4	0.868	INTRON pyd
3L	22608058	3L_22608058_DEL [dm3] 3L_22614958_DEL [dm6]	GG	G	4.426e^-4	0.868	INTRON CG14459	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18402510	X_18402510_SNP [dm3] X_18508477_SNP [dm6]	A	C	4.433e^-4	0.868	SYNONYMOUS_CODING Ggt-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2L	19058079	2L_19058079_SNP [dm3] 2L_19058079_SNP [dm6]	G	T	4.438e^-4	0.868	UTR_3_PRIME CG10492	TF binding site mE1_TFBS_cad
2R	6828165	2R_6828165_SNP [dm3] 2R_10940660_SNP [dm6]	A	T	4.450e^-4	0.868	INTRON Spn47C
2R	9161798	2R_9161798_SNP [dm3] 2R_13274293_SNP [dm6]	A	T	4.453e^-4	0.868	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3R	9451423	3R_9451423_SNP [dm3] 3R_13625701_SNP [dm6]	T	G	4.456e^-4	0.868	INTERGENIC
3R	3972522	3R_3972522_SNP [dm3] 3R_8146800_SNP [dm6]	C	A	4.462e^-4	0.868	DOWNSTREAM grn INTERGENIC	TF binding site mE1_TFBS_cnc
2L	18509651	2L_18509651_SNP [dm3] 2L_18509651_SNP [dm6]	T	C	4.463e^-4	0.868	UTR_5_PRIME CG10178
3R	8966110	3R_8966110_SNP [dm3] 3R_13140388_SNP [dm6]	T	A	4.473e^-4	0.868	INTRON timeout & 2 others
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	4.473e^-4	0.868	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10344076	3R_10344076_SNP [dm3] 3R_14518354_SNP [dm6]	A	C	4.476e^-4	0.868	DOWNSTREAM CG34273 INTRON Pde6
2R	10216933	2R_10216933_SNP [dm3] 2R_14329428_SNP [dm6]	C	T	4.480e^-4	0.868	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
3L	15727553	3L_15727553_SNP [dm3] 3L_15734453_SNP [dm6]	A	T	4.489e^-4	0.868	INTERGENIC
3R	14732139	3R_14732139_SNP [dm3] 3R_18906417_SNP [dm6]	G	T	4.492e^-4	0.868	UPSTREAM EndoA & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10694917	3L_10694917_SNP [dm3] 3L_10701817_SNP [dm6]	T	A	4.495e^-4	0.868	INTERGENIC
2L	6753029	2L_6753029_SNP [dm3] 2L_6753029_SNP [dm6]	T	A	4.500e^-4	0.868	INTRON CG11221
X	462705	X_462705_SNP [dm3] X_568672_SNP [dm6]	C	T	4.507e^-4	0.868	INTRON Appl
3R	23558062	3R_23558062_SNP [dm3] 3R_27732340_SNP [dm6]	A	G	4.514e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22499249	3R_22499249_SNP [dm3] 3R_26673527_SNP [dm6]	G	A	4.518e^-4	0.868	INTRON beat-VII
3R	8948981	3R_8948981_SNP [dm3] 3R_13123259_SNP [dm6]	G	T	4.523e^-4	0.868	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3R	9674370	3R_9674370_SNP [dm3] 3R_13848648_SNP [dm6]	C	T	4.528e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12026191	3L_12026191_SNP [dm3] 3L_12033091_SNP [dm6]	A	T	4.536e^-4	0.868	DOWNSTREAM CG43993 INTRON rols
2R	1914514	2R_1914514_SNP [dm3] 2R_6027009_SNP [dm6]	T	C	4.544e^-4	0.868	SYNONYMOUS_CODING SCAP
2R	9743488	2R_9743488_SNP [dm3] 2R_13855983_SNP [dm6]	G	A	4.547e^-4	0.868	UPSTREAM CG6553 DOWNSTREAM tum & 1 other INTERGENIC
2L	15035850	2L_15035850_SNP [dm3] 2L_15035850_SNP [dm6]	G	C	4.549e^-4	0.868	DOWNSTREAM CIAPIN1 INTRON yellow-c
3R	19037664	3R_19037664_SNP [dm3] 3R_23211942_SNP [dm6]	G	A	4.550e^-4	0.868	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	10570911	2L_10570911_SNP [dm3] 2L_10570911_SNP [dm6]	T	C	4.550e^-4	0.868	INTRON Trim9
X	12384195	X_12384195_SNP [dm3] X_12490162_SNP [dm6]	G	A	4.556e^-4	0.868	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
X	9176140	X_9176140_SNP [dm3] X_9282107_SNP [dm6]	A	T	4.557e^-4	0.868	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18376366	2L_18376366_SNP [dm3] 2L_18376366_SNP [dm6]	G	A	4.562e^-4	0.868	INTRON Fas3
X	16889605	X_16889605_SNP [dm3] X_16995572_SNP [dm6]	G	A	4.566e^-4	0.868	INTRON CG45002	TF binding site mE1_TFBS_HSA
3L	14540249	3L_14540249_SNP [dm3] 3L_14547149_SNP [dm6]	G	A	4.572e^-4	0.869	SYNONYMOUS_CODING CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7987814	3L_7987814_SNP [dm3] 3L_7994714_SNP [dm6]	T	A	4.584e^-4	0.869	INTRON nmo
2R	16739547	2R_16739547_SNP [dm3] 2R_20852042_SNP [dm6]	A	C	4.587e^-4	0.869	NON_SYNONYMOUS_CODING CG9993
2L	13263571	2L_13263571_SNP [dm3] 2L_13263571_SNP [dm6]	C	T	4.591e^-4	0.869	INTRON CG44085
X	12936008	X_12936008_SNP [dm3] X_13041975_SNP [dm6]	G	T	4.606e^-4	0.869	INTRON rad
2R	6389852	2R_6389852_SNP [dm3] 2R_10502347_SNP [dm6]	G	C	4.614e^-4	0.869	INTRON lola
2L	2834941	2L_2834941_SNP [dm3] 2L_2834941_SNP [dm6]	A	C	4.618e^-4	0.869	UTR_3_PRIME CG3119
3R	8407296	3R_8407296_DEL [dm3] 3R_12581574_DEL [dm6]	TC	T	4.627e^-4	0.869	INTRON Octbeta2R
3R	8942193	3R_8942193_SNP [dm3] 3R_13116471_SNP [dm6]	A	T	4.630e^-4	0.869	INTRON timeout
2L	1470333	2L_1470333_SNP [dm3] 2L_1470333_SNP [dm6]	C	A	4.647e^-4	0.869	INTERGENIC
2L	8588972	2L_8588972_SNP [dm3] 2L_8588972_SNP [dm6]	A	G	4.649e^-4	0.869	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
X	17196242	X_17196242_SNP [dm3] X_17302209_SNP [dm6]	C	G	4.654e^-4	0.869	UPSTREAM CG5445 & 1 other INTRON CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12567573	2L_12567573_SNP [dm3] 2L_12567573_SNP [dm6]	A	G	4.658e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10901153	3R_10901153_INS [dm3] 3R_15075431_INS [dm6]	A	AATAAA	4.663e^-4	0.869	INTRON dpr9

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.028e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02426
In_2R_NS	0.01235
In_3R_Mo	0.03997

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.2794	0.0714

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2067 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16178648	2R_16178648_SNP [dm3] 2R_20291143_SNP [dm6]	A	G	2.567e^-9	0.005	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	5.336e^-9	0.005	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	4.981e^-7	0.255	INTRON Con
3R	8975322	3R_8975322_SNP [dm3] 3R_13149600_SNP [dm6]	A	C	5.435e^-7	0.255	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3R	8975342	3R_8975342_SNP [dm3] 3R_13149620_SNP [dm6]	G	A	1.278e^-6	0.407	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3R	8939703	3R_8939703_SNP [dm3] 3R_13113981_SNP [dm6]	T	G	1.356e^-6	0.407	INTRON timeout
3R	8975496	3R_8975496_SNP [dm3] 3R_13149774_SNP [dm6]	C	T	1.518e^-6	0.407	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2R	10216123	2R_10216123_SNP [dm3] 2R_14328618_SNP [dm6]	T	C	2.697e^-6	0.614	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20053711	2R_20053711_SNP [dm3] 2R_24166188_SNP [dm6]	A	G	2.946e^-6	0.614	UPSTREAM CG3328 INTRON CG3328
3R	8967862	3R_8967862_SNP [dm3] 3R_13142140_SNP [dm6]	G	A	4.792e^-6	0.716	INTRON timeout & 2 others
3L	3547227	3L_3547227_SNP [dm3] 3L_3547227_SNP [dm6]	T	C	4.936e^-6	0.716	INTRON Eip63E
2R	16179002	2R_16179002_SNP [dm3] 2R_20291497_SNP [dm6]	T	C	5.158e^-6	0.716	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
X	8184377	X_8184377_SNP [dm3] X_8290344_SNP [dm6]	C	T	5.927e^-6	0.716	INTRON nAChRalpha3
X	11288286	X_11288286_SNP [dm3] X_11394253_SNP [dm6]	C	G	6.526e^-6	0.716	SPLICE_SITE_REGION dlg1 INTRON dlg1
3R	8975238	3R_8975238_SNP [dm3] 3R_13149516_SNP [dm6]	A	G	7.312e^-6	0.716	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	4049259	3L_4049259_SNP [dm3] 3L_4049259_SNP [dm6]	C	T	8.126e^-6	0.716	INTRON CG1136
3R	6068420	3R_6068420_SNP [dm3] 3R_10242698_SNP [dm6]	C	G	9.228e^-6	0.716	NON_SYNONYMOUS_CODING CG42795
2R	20053251	2R_20053251_SNP [dm3] 2R_24165728_SNP [dm6]	C	T	9.484e^-6	0.716	INTRON CG3328
3R	8975278	3R_8975278_SNP [dm3] 3R_13149556_SNP [dm6]	A	G	9.531e^-6	0.716	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2R	10216085	2R_10216085_SNP [dm3] 2R_14328580_SNP [dm6]	A	G	9.614e^-6	0.716	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
2R	16446658	2R_16446658_SNP [dm3] 2R_20559153_SNP [dm6]	G	A	1.039e^-5	0.716	UTR_3_PRIME lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1085788	3L_1085788_SNP [dm3] 3L_1085788_SNP [dm6]	G	A	1.087e^-5	0.716	INTRON bab1
3L	10745229	3L_10745229_SNP [dm3] 3L_10752129_SNP [dm6]	G	A	1.119e^-5	0.716	INTERGENIC
3R	9119626	3R_9119626_SNP [dm3] 3R_13293904_SNP [dm6]	T	C	1.124e^-5	0.716	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	13332237	X_13332237_SNP [dm3] X_13438204_SNP [dm6]	T	A	1.164e^-5	0.716	INTERGENIC
3L	17307470	3L_17307470_SNP [dm3] 3L_17314370_SNP [dm6]	G	C	1.186e^-5	0.716	UPSTREAM mir-219 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19757100	X_19757100_SNP [dm3] X_19863067_SNP [dm6]	T	C	1.189e^-5	0.716	SYNONYMOUS_CODING CG15618 UTR_3_PRIME CG15618	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8379920	3R_8379920_SNP [dm3] 3R_12554198_SNP [dm6]	T	C	1.204e^-5	0.716	INTRON Octbeta2R
3R	8965839	3R_8965839_SNP [dm3] 3R_13140117_SNP [dm6]	C	T	1.234e^-5	0.716	INTRON timeout & 2 others
3R	25850804	3R_25850804_SNP [dm3] 3R_30025082_SNP [dm6]	C	T	1.238e^-5	0.716	INTRON Axn
3L	22854907	3L_22854907_DEL [dm3] 3L_22861807_DEL [dm6]	GATCAATG	G	1.295e^-5	0.716	DOWNSTREAM CG13239 INTERGENIC
2R	20053179	2R_20053179_SNP [dm3] 2R_24165656_SNP [dm6]	C	A	1.305e^-5	0.716	INTRON CG3328
3R	8940399	3R_8940399_SNP [dm3] 3R_13114677_SNP [dm6]	T	C	1.309e^-5	0.716	INTRON timeout
2R	20053194	2R_20053194_SNP [dm3] 2R_24165671_SNP [dm6]	A	C	1.333e^-5	0.716	INTRON CG3328
3L	14687303	3L_14687303_DEL [dm3] 3L_14694203_DEL [dm6]	GG	G	1.337e^-5	0.716	INTRON ome
3L	21764645	3L_21764645_SNP [dm3] 3L_21771545_SNP [dm6]	G	C	1.449e^-5	0.737	DOWNSTREAM CG7370 INTRON CG42689
3R	8951235	3R_8951235_SNP [dm3] 3R_13125513_SNP [dm6]	C	T	1.491e^-5	0.737	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
2R	10216705	2R_10216705_SNP [dm3] 2R_14329200_SNP [dm6]	G	A	1.506e^-5	0.737	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
3R	7532214	3R_7532214_SNP [dm3] 3R_11706492_SNP [dm6]	G	C	1.650e^-5	0.737	INTERGENIC
2R	17096925	2R_17096925_INS [dm3] 2R_21209420_INS [dm6]	C	CC	1.664e^-5	0.737	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
X	16957176	X_16957176_SNP [dm3] X_17063143_SNP [dm6]	G	C	1.688e^-5	0.737	INTRON CG45002
X	3230639	X_3230639_SNP [dm3] X_3336606_SNP [dm6]	T	G	1.760e^-5	0.737	INTRON CR44886 & 1 other
3R	7532204	3R_7532204_SNP [dm3] 3R_11706482_SNP [dm6]	C	T	1.781e^-5	0.737	INTERGENIC
3R	22878830	3R_22878830_SNP [dm3] 3R_27053108_SNP [dm6]	C	T	1.781e^-5	0.737	INTRON RYa-R
3R	8940505	3R_8940505_SNP [dm3] 3R_13114783_SNP [dm6]	A	G	1.805e^-5	0.737	INTRON timeout
3R	22878822	3R_22878822_SNP [dm3] 3R_27053100_SNP [dm6]	G	A	1.827e^-5	0.737	INTRON RYa-R
2R	6791212	2R_6791212_SNP [dm3] 2R_10903707_SNP [dm6]	A	G	1.882e^-5	0.737	NON_SYNONYMOUS_CODING CG12943
2R	10215958	2R_10215958_SNP [dm3] 2R_14328453_SNP [dm6]	C	T	1.987e^-5	0.737	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8966061	3R_8966061_SNP [dm3] 3R_13140339_SNP [dm6]	C	T	2.028e^-5	0.737	INTRON timeout & 2 others
3R	9178974	3R_9178974_SNP [dm3] 3R_13353252_SNP [dm6]	G	T	2.051e^-5	0.737	UPSTREAM mthl12 INTERGENIC
2L	1633299	2L_1633299_SNP [dm3] 2L_1633299_SNP [dm6]	G	T	2.119e^-5	0.737	INTERGENIC
2L	1281183	2L_1281183_SNP [dm3] 2L_1281183_SNP [dm6]	C	A	2.163e^-5	0.737	INTRON robo3
2R	10030838	2R_10030838_SNP [dm3] 2R_14143333_SNP [dm6]	G	A	2.232e^-5	0.737	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	10216471	2R_10216471_SNP [dm3] 2R_14328966_SNP [dm6]	A	G	2.279e^-5	0.737	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
3R	8952419	3R_8952419_SNP [dm3] 3R_13126697_SNP [dm6]	G	A	2.358e^-5	0.737	NON_SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23933497	3R_23933497_SNP [dm3] 3R_28107775_SNP [dm6]	T	C	2.404e^-5	0.737	INTERGENIC
2R	16462285	2R_16462285_SNP [dm3] 2R_20574780_SNP [dm6]	G	A	2.435e^-5	0.737	INTRON qsm
2L	519255	2L_519255_INS [dm3] 2L_519255_INS [dm6]	A	ACCA	2.436e^-5	0.737	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	8872787	2R_8872787_SNP [dm3] 2R_12985282_SNP [dm6]	A	G	2.489e^-5	0.737	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	8975444	3R_8975444_SNP [dm3] 3R_13149722_SNP [dm6]	G	A	2.506e^-5	0.737	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	18033134	3L_18033134_SNP [dm3] 3L_18040034_SNP [dm6]	A	G	2.516e^-5	0.737	UPSTREAM CG32192 INTRON Eip75B
3L	4943538	3L_4943538_SNP [dm3] 3L_4943538_SNP [dm6]	G	A	2.532e^-5	0.737	INTRON Con
X	17176447	X_17176447_SNP [dm3] X_17282414_SNP [dm6]	C	A	2.567e^-5	0.737	UPSTREAM CG5445 INTRON CG8664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10030846	2R_10030846_INS [dm3] 2R_14143341_INS [dm6]	A	ATTTTACAAGGTGACATCTT...	2.599e^-5	0.737	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4951792	3L_4951792_SNP [dm3] 3L_4951792_SNP [dm6]	A	G	2.600e^-5	0.737	INTRON Con
3R	8939713	3R_8939713_SNP [dm3] 3R_13113991_SNP [dm6]	T	C	2.603e^-5	0.737	INTRON timeout
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	2.646e^-5	0.737	INTERGENIC
2R	16178084	2R_16178084_SNP [dm3] 2R_20290579_SNP [dm6]	T	A	2.674e^-5	0.737	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3R	8967508	3R_8967508_SNP [dm3] 3R_13141786_SNP [dm6]	G	A	2.996e^-5	0.808	INTRON timeout & 2 others
2R	20053279	2R_20053279_SNP [dm3] 2R_24165756_SNP [dm6]	A	G	3.029e^-5	0.808	INTRON CG3328
X	8184385	X_8184385_SNP [dm3] X_8290352_SNP [dm6]	G	T	3.059e^-5	0.808	INTRON nAChRalpha3
3R	23962340	3R_23962340_SNP [dm3] 3R_28136618_SNP [dm6]	T	C	3.101e^-5	0.808	INTERGENIC
3L	4952152	3L_4952152_SNP [dm3] 3L_4952152_SNP [dm6]	A	G	3.194e^-5	0.81	INTRON Con	TF binding site mE1_TFBS_chinmo
2R	4682739	2R_4682739_SNP [dm3] 2R_8795234_SNP [dm6]	G	A	3.205e^-5	0.81	INTERGENIC
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	3.237e^-5	0.81	INTRON timeout & 2 others
3R	8951261	3R_8951261_SNP [dm3] 3R_13125539_SNP [dm6]	C	T	3.389e^-5	0.836	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
X	16957138	X_16957138_SNP [dm3] X_17063105_SNP [dm6]	A	G	3.527e^-5	0.848	INTRON CG45002
3L	15787302	3L_15787302_SNP [dm3] 3L_15794202_SNP [dm6]	T	A	3.687e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	8941438	3R_8941438_SNP [dm3] 3R_13115716_SNP [dm6]	G	A	3.690e^-5	0.848	INTRON timeout
3L	2536836	3L_2536836_SNP [dm3] 3L_2536836_SNP [dm6]	G	A	3.711e^-5	0.848	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
2R	10216021	2R_10216021_SNP [dm3] 2R_14328516_SNP [dm6]	T	C	3.732e^-5	0.848	INTRON Shroom	TF binding site mE1_TFBS_chinmo
X	16534869	X_16534869_SNP [dm3] X_16640836_SNP [dm6]	C	A	3.742e^-5	0.848	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	20053207	2R_20053207_SNP [dm3] 2R_24165684_SNP [dm6]	A	C	3.753e^-5	0.848	INTRON CG3328
2R	10216031	2R_10216031_SNP [dm3] 2R_14328526_SNP [dm6]	A	T	3.798e^-5	0.848	INTRON Shroom	TF binding site mE1_TFBS_chinmo
3L	10673711	3L_10673711_INS [dm3] 3L_10680611_INS [dm6]	C	CA	3.864e^-5	0.853	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22855114	3R_22855114_SNP [dm3] 3R_27029392_SNP [dm6]	C	T	3.920e^-5	0.854	INTRON RYa-R
2R	8872704	2R_8872704_SNP [dm3] 2R_12985199_SNP [dm6]	T	G	3.960e^-5	0.854	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	20045171	2R_20045171_SNP [dm3] 2R_24157648_SNP [dm6]	G	A	4.050e^-5	0.86	UTR_3_PRIME Dat DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8943566	3R_8943566_SNP [dm3] 3R_13117844_SNP [dm6]	T	A	4.149e^-5	0.86	INTRON timeout
3L	9029769	3L_9029769_SNP [dm3] 3L_9036669_SNP [dm6]	T	C	4.150e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10216022	2R_10216022_SNP [dm3] 2R_14328517_SNP [dm6]	T	C	4.205e^-5	0.86	INTRON Shroom	TF binding site mE1_TFBS_chinmo
2L	14512847	2L_14512847_SNP [dm3] 2L_14512847_SNP [dm6]	A	G	4.267e^-5	0.86	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	9159510	3L_9159510_SNP [dm3] 3L_9166410_SNP [dm6]	G	A	4.282e^-5	0.86	INTRON Rdl
3R	8975566	3R_8975566_SNP [dm3] 3R_13149844_SNP [dm6]	T	C	4.387e^-5	0.86	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	9949596	3L_9949596_SNP [dm3] 3L_9956496_SNP [dm6]	G	A	4.390e^-5	0.86	INTRON CG34356
2R	16178730	2R_16178730_SNP [dm3] 2R_20291225_SNP [dm6]	A	G	4.434e^-5	0.86	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	1010531	3L_1010531_SNP [dm3] 3L_1010531_SNP [dm6]	G	T	4.449e^-5	0.86	INTRON trio
2R	6004841	2R_6004841_SNP [dm3] 2R_10117336_SNP [dm6]	C	A	4.491e^-5	0.86	UTR_3_PRIME Pfk UPSTREAM dmpd DOWNSTREAM Pfk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10219033	3L_10219033_SNP [dm3] 3L_10225933_SNP [dm6]	G	A	4.553e^-5	0.863	UPSTREAM scramb1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8955280	3R_8955280_SNP [dm3] 3R_13129558_SNP [dm6]	T	C	4.694e^-5	0.869	INTRON timeout & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9856765	3L_9856765_SNP [dm3] 3L_9863665_SNP [dm6]	C	G	4.723e^-5	0.869	UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19899172	3R_19899172_SNP [dm3] 3R_24073450_SNP [dm6]	T	G	4.726e^-5	0.869	INTRON 4EHP
2R	10029516	2R_10029516_SNP [dm3] 2R_14142011_SNP [dm6]	C	T	4.783e^-5	0.871	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	20053731	2R_20053731_SNP [dm3] 2R_24166208_SNP [dm6]	A	T	4.883e^-5	0.874	UPSTREAM CG3328 INTRON CG3328
X	15144531	X_15144531_SNP [dm3] X_15250498_SNP [dm6]	C	T	4.910e^-5	0.874	INTERGENIC
X	797093	X_797093_SNP [dm3] X_903060_SNP [dm6]	A	C	4.941e^-5	0.874	INTRON CG43867	TF binding site mE1_TFBS_chinmo
2L	11246328	2L_11246328_DEL [dm3] 2L_11246328_DEL [dm6]	TTAT	T	5.092e^-5	0.875	INTRON ab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23962420	3R_23962420_SNP [dm3] 3R_28136698_SNP [dm6]	C	T	5.126e^-5	0.875	INTERGENIC
3R	25402404	3R_25402404_SNP [dm3] 3R_29576682_SNP [dm6]	T	G	5.141e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	797102	X_797102_SNP [dm3] X_903069_SNP [dm6]	G	C	5.259e^-5	0.875	INTRON CG43867	TF binding site mE1_TFBS_chinmo
X	8740505	X_8740505_SNP [dm3] X_8846472_SNP [dm6]	G	A	5.329e^-5	0.875	INTRON CG12075
3R	8966778	3R_8966778_DEL [dm3] 3R_13141056_DEL [dm6]	TT	T	5.513e^-5	0.875	INTRON timeout & 2 others
3R	8939969	3R_8939969_SNP [dm3] 3R_13114247_SNP [dm6]	A	G	5.607e^-5	0.875	SPLICE_SITE_REGION timeout INTRON timeout
2R	10537913	2R_10537913_SNP [dm3] 2R_14650408_SNP [dm6]	C	T	5.835e^-5	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9545449	3L_9545449_INS [dm3] 3L_9552349_INS [dm6]	T	TATTCA	5.904e^-5	0.875	INTRON CG42673
2L	2711970	2L_2711970_SNP [dm3] 2L_2711970_SNP [dm6]	G	A	5.989e^-5	0.875	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15807256	2L_15807256_SNP [dm3] 2L_15807256_SNP [dm6]	C	A	6.006e^-5	0.875	EXON CR44602
X	8182276	X_8182276_SNP [dm3] X_8288243_SNP [dm6]	C	G	6.118e^-5	0.875	INTRON nAChRalpha3
X	5260871	X_5260871_SNP [dm3] X_5366838_SNP [dm6]	T	A	6.170e^-5	0.875	INTRON SK
3L	1940725	3L_1940725_SNP [dm3] 3L_1940725_SNP [dm6]	T	C	6.171e^-5	0.875	UPSTREAM Mfap1 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	23646330	3R_23646330_SNP [dm3] 3R_27820608_SNP [dm6]	G	A	6.212e^-5	0.875	INTRON CG34353
2L	4340831	2L_4340831_DEL [dm3] 2L_4340831_DEL [dm6]	AC	A	6.275e^-5	0.875	INTRON Atet
2L	4340845	2L_4340845_SNP [dm3] 2L_4340845_SNP [dm6]	T	A	6.275e^-5	0.875	INTRON Atet
3R	8946785	3R_8946785_SNP [dm3] 3R_13121063_SNP [dm6]	C	T	6.339e^-5	0.875	DOWNSTREAM 2mit INTRON timeout
3R	8967720	3R_8967720_SNP [dm3] 3R_13141998_SNP [dm6]	C	T	6.426e^-5	0.875	INTRON timeout & 2 others
2L	4340835	2L_4340835_DEL [dm3] 2L_4340835_DEL [dm6]	CCCACACG	C	6.478e^-5	0.875	INTRON Atet
2L	4983906	2L_4983906_SNP [dm3] 2L_4983906_SNP [dm6]	A	C	6.485e^-5	0.875	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_chinmo
3R	923911	3R_923911_SNP [dm3] 3R_5098189_SNP [dm6]	T	C	6.515e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	517196	2L_517196_INS [dm3] 2L_517196_INS [dm6]	A	ACACACACACCAGCAAGCA...	6.564e^-5	0.875	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9243069	3L_9243069_SNP [dm3] 3L_9249969_SNP [dm6]	T	C	6.641e^-5	0.875	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9863849	3R_9863849_SNP [dm3] 3R_14038127_SNP [dm6]	G	A	6.677e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8967172	3R_8967172_SNP [dm3] 3R_13141450_SNP [dm6]	A	G	6.680e^-5	0.875	INTRON timeout & 2 others
3L	18033144	3L_18033144_SNP [dm3] 3L_18040044_SNP [dm6]	A	T	6.746e^-5	0.875	UPSTREAM CG32192 INTRON Eip75B
3R	8940509	3R_8940509_SNP [dm3] 3R_13114787_SNP [dm6]	T	C	6.750e^-5	0.875	INTRON timeout
X	16884152	X_16884152_SNP [dm3] X_16990119_SNP [dm6]	A	C	6.789e^-5	0.875	INTRON CG45002
3L	1898827	3L_1898827_DEL [dm3] 3L_1898827_DEL [dm6]	ATT	A	6.861e^-5	0.875	INTRON CG1887	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	15322038	3R_15322038_SNP [dm3] 3R_19496316_SNP [dm6]	A	G	6.914e^-5	0.875	INTRON Dys
3R	17652226	3R_17652226_SNP [dm3] 3R_21826504_SNP [dm6]	A	G	7.008e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1281172	2L_1281172_SNP [dm3] 2L_1281172_SNP [dm6]	C	T	7.049e^-5	0.875	INTRON robo3
3R	9129506	3R_9129506_SNP [dm3] 3R_13303784_SNP [dm6]	G	T	7.068e^-5	0.875	UTR_3_PRIME CG43208 UPSTREAM CG32473 INTRON CG32473
2L	12447058	2L_12447058_SNP [dm3] 2L_12447058_SNP [dm6]	C	A	7.070e^-5	0.875	NON_SYNONYMOUS_CODING CG5421
2L	13433819	2L_13433819_SNP [dm3] 2L_13433819_SNP [dm6]	T	C	7.091e^-5	0.875	INTRON CG42784	TF binding site mE1_TFBS_cad
2L	20848397	2L_20848397_INS [dm3] 2L_20848397_INS [dm6]	T	TGTT	7.145e^-5	0.875	UPSTREAM CR44307 & 1 other INTRON CG31676
X	20519100	X_20519100_SNP [dm3] X_20648073_SNP [dm6]	A	C	7.161e^-5	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1
2R	10216018	2R_10216018_SNP [dm3] 2R_14328513_SNP [dm6]	A	G	7.194e^-5	0.875	INTRON Shroom	TF binding site mE1_TFBS_chinmo
3L	10563298	3L_10563298_SNP [dm3] 3L_10570198_SNP [dm6]	A	G	7.239e^-5	0.875	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2R	12254331	2R_12254331_SNP [dm3] 2R_16366826_SNP [dm6]	G	C	7.382e^-5	0.875	UPSTREAM CG15711 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16985562	X_16985562_SNP [dm3] X_17091529_SNP [dm6]	C	A	7.423e^-5	0.875	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	7.435e^-5	0.875	INTRON qsm
3R	19899173	3R_19899173_SNP [dm3] 3R_24073451_SNP [dm6]	G	A	7.438e^-5	0.875	INTRON 4EHP
2L	4340852	2L_4340852_SNP [dm3] 2L_4340852_SNP [dm6]	G	A	7.455e^-5	0.875	INTRON Atet
2R	17360959	2R_17360959_SNP [dm3] 2R_21473454_SNP [dm6]	G	A	7.470e^-5	0.875	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	5975217	3R_5975217_SNP [dm3] 3R_10149495_SNP [dm6]	T	A	7.488e^-5	0.875	INTRON Invadolysin
2R	4807317	2R_4807317_SNP [dm3] 2R_8919812_SNP [dm6]	G	T	7.621e^-5	0.875	SYNONYMOUS_CODING CG8248 UPSTREAM CG34219 DOWNSTREAM Spt
3R	6853153	3R_6853153_SNP [dm3] 3R_11027431_SNP [dm6]	T	A	7.695e^-5	0.875	INTRON CG34114
3R	8952712	3R_8952712_SNP [dm3] 3R_13126990_SNP [dm6]	C	T	7.856e^-5	0.875	SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo
3L	6495658	3L_6495658_SNP [dm3] 3L_6502558_SNP [dm6]	C	T	7.859e^-5	0.875	INTRON sfl
2L	4340828	2L_4340828_DEL [dm3] 2L_4340828_DEL [dm6]	TG	A	7.881e^-5	0.875	INTRON Atet
2R	17360955	2R_17360955_SNP [dm3] 2R_21473450_SNP [dm6]	T	C	7.913e^-5	0.875	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	11066844	2L_11066844_SNP [dm3] 2L_11066844_SNP [dm6]	C	A	7.937e^-5	0.875	START_GAINED Samuel UTR_5_PRIME Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	23962377	3R_23962377_SNP [dm3] 3R_28136655_SNP [dm6]	C	A	8.008e^-5	0.875	INTERGENIC
3R	25851526	3R_25851526_INS [dm3] 3R_30025804_INS [dm6]	CT	TGTTTCATGTTCATGTTTC...	8.047e^-5	0.875	INTRON Axn
2R	8702557	2R_8702557_SNP [dm3] 2R_12815052_SNP [dm6]	G	A	8.065e^-5	0.875	INTERGENIC
2R	6719417	2R_6719417_SNP [dm3] 2R_10831912_SNP [dm6]	A	G	8.078e^-5	0.875	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17174233	X_17174233_SNP [dm3] X_17280200_SNP [dm6]	C	T	8.098e^-5	0.875	NON_SYNONYMOUS_CODING f DOWNSTREAM CG8664
3L	21916473	3L_21916473_SNP [dm3] 3L_21923373_SNP [dm6]	A	G	8.102e^-5	0.875	UTR_3_PRIME mub INTRON mub
2R	10215811	2R_10215811_SNP [dm3] 2R_14328306_SNP [dm6]	T	C	8.106e^-5	0.875	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10029505	2R_10029505_SNP [dm3] 2R_14142000_SNP [dm6]	A	T	8.110e^-5	0.875	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	6563351	3L_6563351_SNP [dm3] 3L_6570251_SNP [dm6]	T	C	8.136e^-5	0.875	INTRON CG18769 & 1 other
3R	26668172	3R_26668172_SNP [dm3] 3R_30842450_SNP [dm6]	C	T	8.147e^-5	0.875	DOWNSTREAM CG15544 INTERGENIC	TF binding site mE1_TFBS_cad
3R	8379927	3R_8379927_SNP [dm3] 3R_12554205_SNP [dm6]	G	A	8.155e^-5	0.875	INTRON Octbeta2R
2R	7395544	2R_7395544_SNP [dm3] 2R_11508039_SNP [dm6]	A	G	8.234e^-5	0.875	UTR_3_PRIME inv DOWNSTREAM inv
2R	16479327	2R_16479327_SNP [dm3] 2R_20591822_SNP [dm6]	G	A	8.377e^-5	0.875	INTRON bl	TF binding site BDTNP1_TFBS_dl
X	12880717	X_12880717_SNP [dm3] X_12986684_SNP [dm6]	G	T	8.406e^-5	0.875	INTERGENIC
2L	12056080	2L_12056080_SNP [dm3] 2L_12056080_SNP [dm6]	A	G	8.493e^-5	0.875	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	8958396	3R_8958396_SNP [dm3] 3R_13132674_SNP [dm6]	C	G	8.579e^-5	0.875	UTR_5_PRIME 2mit UPSTREAM 2mit INTRON timeout EXON CR45109
2L	663645	2L_663645_SNP [dm3] 2L_663645_SNP [dm6]	G	T	8.773e^-5	0.875	INTRON ds
X	17177495	X_17177495_SNP [dm3] X_17283462_SNP [dm6]	A	G	8.840e^-5	0.875	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
2R	6612632	2R_6612632_SNP [dm3] 2R_10725127_SNP [dm6]	A	G	8.870e^-5	0.875	UPSTREAM CG12309 INTRON Rab3
X	15419512	X_15419512_SNP [dm3] X_15525479_SNP [dm6]	A	G	8.947e^-5	0.875	INTRON Ac13E
X	16884680	X_16884680_SNP [dm3] X_16990647_SNP [dm6]	G	A	8.969e^-5	0.875	INTRON CG45002	TF binding site BDTNP1_TFBS_hb
2L	8330031	2L_8330031_SNP [dm3] 2L_8330031_SNP [dm6]	C	G	8.982e^-5	0.875	INTRON CG14275
X	4965559	X_4965559_SNP [dm3] X_5071526_SNP [dm6]	G	A	9.033e^-5	0.875	UTR_3_PRIME CG32767 DOWNSTREAM ovo
X	4242574	X_4242574_SNP [dm3] X_4348541_SNP [dm6]	G	C	9.150e^-5	0.875	INTRON norpA
3R	8968047	3R_8968047_SNP [dm3] 3R_13142325_SNP [dm6]	G	T	9.157e^-5	0.875	INTRON timeout & 2 others
X	8766474	X_8766474_DEL [dm3] X_8872441_DEL [dm6]	AA	A	9.211e^-5	0.875	UTR_3_PRIME CG12075 DOWNSTREAM Moe & 1 other
X	8182283	X_8182283_SNP [dm3] X_8288250_SNP [dm6]	A	T	9.218e^-5	0.875	INTRON nAChRalpha3
3L	3849651	3L_3849651_SNP [dm3] 3L_3849651_SNP [dm6]	G	T	9.230e^-5	0.875	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22878831	3R_22878831_SNP [dm3] 3R_27053109_SNP [dm6]	T	A	9.242e^-5	0.875	INTRON RYa-R
2R	7568491	2R_7568491_SNP [dm3] 2R_11680986_SNP [dm6]	T	C	9.257e^-5	0.875	INTRON Buffy
2R	10216010	2R_10216010_DEL [dm3] 2R_14328505_DEL [dm6]	CAT	C	9.293e^-5	0.875	INTRON Shroom	TF binding site mE1_TFBS_chinmo
3L	3547111	3L_3547111_SNP [dm3] 3L_3547111_SNP [dm6]	T	C	9.303e^-5	0.875	INTRON Eip63E
3L	1745046	3L_1745046_SNP [dm3] 3L_1745046_SNP [dm6]	A	C	9.330e^-5	0.875	UTR_3_PRIME Gk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12187389	X_12187389_SNP [dm3] X_12293356_SNP [dm6]	T	A	9.381e^-5	0.875	INTRON Ten-a
X	20673576	X_20673576_SNP [dm3] X_20802549_SNP [dm6]	T	G	9.403e^-5	0.875	INTRON shakB
3R	8946544	3R_8946544_DEL [dm3] 3R_13120822_DEL [dm6]	CGCAAAAAGTGAAGTGGCAA...	G	9.409e^-5	0.875	INTRON timeout
3R	23210969	3R_23210969_SNP [dm3] 3R_27385247_SNP [dm6]	T	C	9.474e^-5	0.875	INTRON side
3L	1399790	3L_1399790_SNP [dm3] 3L_1399790_SNP [dm6]	G	A	9.486e^-5	0.875	SYNONYMOUS_CODING CG32320 INTRON Ptp61F
2L	4340869	2L_4340869_SNP [dm3] 2L_4340869_SNP [dm6]	G	A	9.494e^-5	0.875	INTRON Atet
3R	6068467	3R_6068467_SNP [dm3] 3R_10242745_SNP [dm6]	C	T	9.512e^-5	0.875	SYNONYMOUS_CODING CG42795
2R	16178728	2R_16178728_SNP [dm3] 2R_20291223_SNP [dm6]	C	T	9.591e^-5	0.875	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2R	16477628	2R_16477628_SNP [dm3] 2R_20590123_SNP [dm6]	A	G	9.626e^-5	0.875	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9754549	2R_9754549_SNP [dm3] 2R_13867044_SNP [dm6]	C	G	9.639e^-5	0.875	INTRON shot
X	16905486	X_16905486_SNP [dm3] X_17011453_SNP [dm6]	T	C	9.644e^-5	0.875	INTRON CG45002
2R	17096312	2R_17096312_SNP [dm3] 2R_21208807_SNP [dm6]	T	C	9.681e^-5	0.875	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16905450	X_16905450_SNP [dm3] X_17011417_SNP [dm6]	G	A	9.729e^-5	0.875	INTRON CG45002
2L	532094	2L_532094_SNP [dm3] 2L_532094_SNP [dm6]	C	T	9.738e^-5	0.875	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4340871	2L_4340871_SNP [dm3] 2L_4340871_SNP [dm6]	A	G	9.759e^-5	0.875	INTRON Atet
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	9.813e^-5	0.875	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	1944502	3L_1944502_SNP [dm3] 3L_1944502_SNP [dm6]	C	T	9.876e^-5	0.875	SYNONYMOUS_CODING mu2
3L	7752514	3L_7752514_SNP [dm3] 3L_7759414_SNP [dm6]	G	T	9.919e^-5	0.875	DOWNSTREAM CG32373 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	20916509	X_20916509_SNP [dm3] X_21045482_SNP [dm6]	T	A	1.006e^-4	0.875	INTRON Cbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12479465	3L_12479465_SNP [dm3] 3L_12486365_SNP [dm6]	A	G	1.010e^-4	0.875	UTR_3_PRIME CG33725 DOWNSTREAM CG10660	TF binding site BDTNP1_TFBS_twi
2L	1145577	2L_1145577_SNP [dm3] 2L_1145577_SNP [dm6]	C	T	1.024e^-4	0.875	SYNONYMOUS_CODING MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17511136	3R_17511136_SNP [dm3] 3R_21685414_SNP [dm6]	T	A	1.024e^-4	0.875	INTRON CG31176
2L	8399597	2L_8399597_SNP [dm3] 2L_8399597_SNP [dm6]	C	A	1.025e^-4	0.875	SYNONYMOUS_CODING CG13386 UPSTREAM CG31898	TF binding site mE1_TFBS_chinmo
2L	16799099	2L_16799099_SNP [dm3] 2L_16799099_SNP [dm6]	C	T	1.039e^-4	0.875	START_GAINED Ugt36Bc UTR_5_PRIME Ugt36Bc UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb
2R	10031189	2R_10031189_SNP [dm3] 2R_14143684_SNP [dm6]	C	T	1.041e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4978928	3L_4978928_SNP [dm3] 3L_4978928_SNP [dm6]	G	T	1.045e^-4	0.875	INTRON Con	TF binding site BDTNP1_TFBS_da
3L	11519521	3L_11519521_SNP [dm3] 3L_11526421_SNP [dm6]	T	C	1.048e^-4	0.875	INTRON Mob2
2L	12698592	2L_12698592_SNP [dm3] 2L_12698592_SNP [dm6]	C	T	1.051e^-4	0.875	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2088068	X_2088068_SNP [dm3] X_2194035_SNP [dm6]	T	C	1.055e^-4	0.875	UPSTREAM CG14053 & 1 other INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_Trl
2L	14512846	2L_14512846_SNP [dm3] 2L_14512846_SNP [dm6]	C	T	1.062e^-4	0.875	UPSTREAM CR45693 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	23637616	3R_23637616_SNP [dm3] 3R_27811894_SNP [dm6]	T	A	1.079e^-4	0.875	INTRON CG34353
3R	14027591	3R_14027591_SNP [dm3] 3R_18201869_SNP [dm6]	C	T	1.081e^-4	0.875	INTRON CG7985
X	16930232	X_16930232_SNP [dm3] X_17036199_SNP [dm6]	A	G	1.087e^-4	0.875	INTRON CG45002
X	16884126	X_16884126_SNP [dm3] X_16990093_SNP [dm6]	C	T	1.087e^-4	0.875	INTRON CG45002
2L	13433914	2L_13433914_SNP [dm3] 2L_13433914_SNP [dm6]	C	G	1.095e^-4	0.875	INTRON CG42784	TF binding site mE1_TFBS_cad
2R	7395527	2R_7395527_SNP [dm3] 2R_11508022_SNP [dm6]	T	G	1.109e^-4	0.875	UTR_3_PRIME inv DOWNSTREAM inv
3R	22268918	3R_22268918_SNP [dm3] 3R_26443196_SNP [dm6]	T	C	1.113e^-4	0.875	INTRON tx
2R	11972378	2R_11972378_SNP [dm3] 2R_16084873_SNP [dm6]	A	C	1.118e^-4	0.875	NON_SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	1.118e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9943073	3R_9943073_SNP [dm3] 3R_14117351_SNP [dm6]	C	G	1.119e^-4	0.875	INTRON Kif19A
3R	7592851	3R_7592851_INS [dm3] 3R_11767129_INS [dm6]	G	GGAA	1.134e^-4	0.875	UTR_3_PRIME l_3_neo38
3R	11461321	3R_11461321_SNP [dm3] 3R_15635599_SNP [dm6]	C	T	1.138e^-4	0.875	SYNONYMOUS_CODING CG43335
2R	14957436	2R_14957436_SNP [dm3] 2R_19069931_SNP [dm6]	A	G	1.139e^-4	0.875	INTRON 5-HT1A
3L	6495657	3L_6495657_SNP [dm3] 3L_6502557_SNP [dm6]	A	G	1.141e^-4	0.875	INTRON sfl
2L	668359	2L_668359_SNP [dm3] 2L_668359_SNP [dm6]	C	T	1.146e^-4	0.875	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6563355	3L_6563355_SNP [dm3] 3L_6570255_SNP [dm6]	A	T	1.147e^-4	0.875	INTRON CG18769 & 1 other
2L	3969308	2L_3969308_SNP [dm3] 2L_3969308_SNP [dm6]	T	A	1.148e^-4	0.875	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10029833	2R_10029833_SNP [dm3] 2R_14142328_SNP [dm6]	C	G	1.157e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
3L	1409673	3L_1409673_SNP [dm3] 3L_1409673_SNP [dm6]	C	G	1.164e^-4	0.875	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10007712	3L_10007712_SNP [dm3] 3L_10014612_SNP [dm6]	T	A	1.172e^-4	0.875	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	8944546	3R_8944546_SNP [dm3] 3R_13118824_SNP [dm6]	C	T	1.177e^-4	0.875	INTRON timeout
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	1.187e^-4	0.875	INTERGENIC
2L	12698575	2L_12698575_SNP [dm3] 2L_12698575_SNP [dm6]	G	A	1.194e^-4	0.875	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19341816	2R_19341816_SNP [dm3] 2R_23454293_SNP [dm6]	T	A	1.202e^-4	0.875	INTRON CG43795
2R	11972352	2R_11972352_SNP [dm3] 2R_16084847_SNP [dm6]	A	T	1.221e^-4	0.875	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4013181	3L_4013181_SNP [dm3] 3L_4013181_SNP [dm6]	G	C	1.222e^-4	0.875	INTERGENIC
2R	12254028	2R_12254028_SNP [dm3] 2R_16366523_SNP [dm6]	C	T	1.239e^-4	0.875	UPSTREAM CG15711 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2333043	3R_2333043_INS [dm3] 3R_6507321_INS [dm6]	C	CC	1.243e^-4	0.875	INTERGENIC
2R	19102681	2R_19102681_SNP [dm3] 2R_23215158_SNP [dm6]	T	G	1.248e^-4	0.875	INTERGENIC
2R	4799432	2R_4799432_SNP [dm3] 2R_8911927_SNP [dm6]	C	T	1.250e^-4	0.875	NON_SYNONYMOUS_CODING Pgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13024874	3L_13024874_SNP [dm3] 3L_13031774_SNP [dm6]	A	T	1.253e^-4	0.875	DOWNSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23646776	3R_23646776_SNP [dm3] 3R_27821054_SNP [dm6]	T	A	1.254e^-4	0.875	INTRON CG34353
2L	16799089	2L_16799089_SNP [dm3] 2L_16799089_SNP [dm6]	C	T	1.261e^-4	0.875	UTR_5_PRIME Ugt36Bc UPSTREAM Ugt36Bc DOWNSTREAM Ugt36Bb
2L	4726336	2L_4726336_SNP [dm3] 2L_4726336_SNP [dm6]	G	A	1.264e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1951632	3L_1951632_SNP [dm3] 3L_1951632_SNP [dm6]	T	C	1.265e^-4	0.875	NON_SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12593371	X_12593371_SNP [dm3] X_12699338_SNP [dm6]	G	A	1.270e^-4	0.875	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16485836	2R_16485836_SNP [dm3] 2R_20598331_SNP [dm6]	C	T	1.282e^-4	0.875	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6392974	2R_6392974_SNP [dm3] 2R_10505469_SNP [dm6]	T	A	1.287e^-4	0.875	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11767137	2R_11767137_SNP [dm3] 2R_15879632_SNP [dm6]	G	A	1.289e^-4	0.875	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9212200	2L_9212200_SNP [dm3] 2L_9212200_SNP [dm6]	T	C	1.293e^-4	0.875	INTRON tai
2L	9212218	2L_9212218_SNP [dm3] 2L_9212218_SNP [dm6]	A	T	1.293e^-4	0.875	INTRON tai
X	16536721	X_16536721_SNP [dm3] X_16642688_SNP [dm6]	C	T	1.297e^-4	0.875	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23646763	3R_23646763_SNP [dm3] 3R_27821041_SNP [dm6]	G	T	1.300e^-4	0.875	INTRON CG34353
2L	4187266	2L_4187266_SNP [dm3] 2L_4187266_SNP [dm6]	G	A	1.302e^-4	0.875	NON_SYNONYMOUS_CODING CG31961 UPSTREAM lectin-24Db	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2314388	2L_2314388_SNP [dm3] 2L_2314388_SNP [dm6]	A	T	1.302e^-4	0.875	INTRON CG9967 & 1 other
3L	1977839	3L_1977839_SNP [dm3] 3L_1977839_SNP [dm6]	A	T	1.310e^-4	0.875	INTERGENIC
3L	13632457	3L_13632457_SNP [dm3] 3L_13639357_SNP [dm6]	T	C	1.312e^-4	0.875	INTRON bru-3
3R	8946646	3R_8946646_SNP [dm3] 3R_13120924_SNP [dm6]	T	C	1.317e^-4	0.875	INTRON timeout
3R	8956911	3R_8956911_SNP [dm3] 3R_13131189_SNP [dm6]	T	G	1.324e^-4	0.875	INTRON timeout & 1 other
X	1241510	X_1241510_SNP [dm3] X_1347477_SNP [dm6]	G	A	1.331e^-4	0.875	SYNONYMOUS_CODING Tsp2A INTRON CG11418	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	13740452	2L_13740452_SNP [dm3] 2L_13740452_SNP [dm6]	A	G	1.332e^-4	0.875	INTERGENIC
2L	12446969	2L_12446969_SNP [dm3] 2L_12446969_SNP [dm6]	A	T	1.334e^-4	0.875	NON_SYNONYMOUS_CODING CG5421
3L	18080631	3L_18080631_SNP [dm3] 3L_18087531_SNP [dm6]	A	T	1.335e^-4	0.875	UPSTREAM CR32194 & 1 other DOWNSTREAM CG13698 INTERGENIC
3R	8965659	3R_8965659_SNP [dm3] 3R_13139937_SNP [dm6]	G	A	1.342e^-4	0.875	INTRON timeout & 2 others
3L	5574933	3L_5574933_SNP [dm3] 3L_5581833_SNP [dm6]	C	T	1.343e^-4	0.875	INTERGENIC
2R	17360939	2R_17360939_SNP [dm3] 2R_21473434_SNP [dm6]	C	G	1.344e^-4	0.875	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	21700077	2L_21700077_SNP [dm3] 2L_21700077_SNP [dm6]	A	C	1.346e^-4	0.875	INTRON CG31619
3R	8941527	3R_8941527_DEL [dm3] 3R_13115805_DEL [dm6]	TATCT	T	1.347e^-4	0.875	INTRON timeout
3R	8379931	3R_8379931_SNP [dm3] 3R_12554209_SNP [dm6]	T	G	1.354e^-4	0.875	INTRON Octbeta2R
2R	1735860	2R_1735860_SNP [dm3] 2R_5848355_SNP [dm6]	G	A	1.354e^-4	0.875	INTRON dpr12
3R	23646779	3R_23646779_SNP [dm3] 3R_27821057_SNP [dm6]	A	G	1.354e^-4	0.875	INTRON CG34353
X	3231238	X_3231238_SNP [dm3] X_3337205_SNP [dm6]	T	G	1.355e^-4	0.875	INTRON CR44886 & 1 other
3L	4171929	3L_4171929_SNP [dm3] 3L_4171929_SNP [dm6]	A	T	1.358e^-4	0.875	INTRON Ero1L
3L	7821223	3L_7821223_SNP [dm3] 3L_7828123_SNP [dm6]	C	A	1.361e^-4	0.875	UPSTREAM Pdp1 INTRON Pdp1
3R	15016764	3R_15016764_SNP [dm3] 3R_19191042_SNP [dm6]	G	A	1.361e^-4	0.875	INTRON CG31475
X	20950512	X_20950512_SNP [dm3] X_21079485_SNP [dm6]	A	C	1.370e^-4	0.875	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9178770	3R_9178770_SNP [dm3] 3R_13353048_SNP [dm6]	G	T	1.371e^-4	0.875	UPSTREAM mthl12 INTERGENIC
X	12163565	X_12163565_SNP [dm3] X_12269532_SNP [dm6]	T	C	1.373e^-4	0.875	INTRON Ten-a
3L	22854871	3L_22854871_SNP [dm3] 3L_22861771_SNP [dm6]	C	G	1.375e^-4	0.875	DOWNSTREAM CG13239 INTERGENIC
X	13525294	X_13525294_SNP [dm3] X_13631261_SNP [dm6]	C	T	1.376e^-4	0.875	INTRON NFAT
2R	20999103	2R_20999103_SNP [dm3] 2R_25111580_SNP [dm6]	G	A	1.380e^-4	0.875	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14068603	3L_14068603_SNP [dm3] 3L_14075503_SNP [dm6]	G	C	1.387e^-4	0.875	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
3L	7753309	3L_7753309_INS [dm3] 3L_7760209_INS [dm6]	T	TAT	1.388e^-4	0.875	UPSTREAM Hn INTERGENIC
2L	14307185	2L_14307185_SNP [dm3] 2L_14307185_SNP [dm6]	T	A	1.394e^-4	0.875	INTRON wb
X	12165379	X_12165379_SNP [dm3] X_12271346_SNP [dm6]	C	T	1.397e^-4	0.875	INTRON Ten-a
3R	24477174	3R_24477174_SNP [dm3] 3R_28651452_SNP [dm6]	T	A	1.404e^-4	0.875	UPSTREAM CG31050 INTERGENIC
2L	3241377	2L_3241377_SNP [dm3] 2L_3241377_SNP [dm6]	C	T	1.408e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6600983	2R_6600983_SNP [dm3] 2R_10713478_SNP [dm6]	C	A	1.419e^-4	0.875	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19111076	2R_19111076_SNP [dm3] 2R_23223553_SNP [dm6]	T	G	1.419e^-4	0.875	INTERGENIC
3L	4941841	3L_4941841_SNP [dm3] 3L_4941841_SNP [dm6]	T	C	1.423e^-4	0.875	INTRON Con
2L	17605565	2L_17605565_SNP [dm3] 2L_17605565_SNP [dm6]	C	T	1.437e^-4	0.875	DOWNSTREAM CR44412 INTERGENIC
2L	4340821	2L_4340821_SNP [dm3] 2L_4340821_SNP [dm6]	C	G	1.439e^-4	0.875	INTRON Atet
3L	6124048	3L_6124048_SNP [dm3] 3L_6130948_SNP [dm6]	C	T	1.440e^-4	0.875	UTR_5_PRIME Lcp65Ag3 DOWNSTREAM Cpr65Au
3R	6858993	3R_6858993_SNP [dm3] 3R_11033271_SNP [dm6]	C	G	1.440e^-4	0.875	INTRON CG34114
X	17279358	X_17279358_SNP [dm3] X_17385325_SNP [dm6]	G	T	1.442e^-4	0.875	INTERGENIC
2R	10216765	2R_10216765_SNP [dm3] 2R_14329260_SNP [dm6]	C	A	1.446e^-4	0.875	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo
X	18740512	X_18740512_DEL [dm3] X_18846479_DEL [dm6]	TT	T	1.452e^-4	0.875	UTR_3_PRIME CG7280 INTRON CG34422	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18714993	3R_18714993_SNP [dm3] 3R_22889271_SNP [dm6]	T	C	1.452e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9597071	X_9597071_SNP [dm3] X_9703038_SNP [dm6]	G	A	1.464e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	16178726	2R_16178726_SNP [dm3] 2R_20291221_SNP [dm6]	T	C	1.470e^-4	0.879	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2L	8800544	2L_8800544_SNP [dm3] 2L_8800544_SNP [dm6]	G	A	1.472e^-4	0.879	INTERGENIC
X	12163604	X_12163604_SNP [dm3] X_12269571_SNP [dm6]	C	T	1.479e^-4	0.881	INTRON Ten-a
X	16884127	X_16884127_SNP [dm3] X_16990094_SNP [dm6]	A	G	1.507e^-4	0.885	INTRON CG45002
2L	12056141	2L_12056141_SNP [dm3] 2L_12056141_SNP [dm6]	A	C	1.513e^-4	0.885	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	13782550	2R_13782550_SNP [dm3] 2R_17895045_SNP [dm6]	T	C	1.514e^-4	0.885	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	10748233	2R_10748233_INS [dm3] 2R_14860728_INS [dm6]	A	ACAA	1.516e^-4	0.885	UTR_5_PRIME U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	27101747	3R_27101747_SNP [dm3] 3R_31276025_SNP [dm6]	G	T	1.533e^-4	0.885	INTERGENIC
3L	17483943	3L_17483943_SNP [dm3] 3L_17490843_SNP [dm6]	G	A	1.540e^-4	0.885	INTRON Oatp74D
3R	3505945	3R_3505945_SNP [dm3] 3R_7680223_SNP [dm6]	C	T	1.555e^-4	0.885	INTRON Nlg1
3L	18808705	3L_18808705_SNP [dm3] 3L_18815605_SNP [dm6]	T	A	1.558e^-4	0.885	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2792573	X_2792573_SNP [dm3] X_2898540_SNP [dm6]	G	A	1.560e^-4	0.885	INTRON kirre
3R	8956938	3R_8956938_DEL [dm3] 3R_13131216_DEL [dm6]	TT	T	1.563e^-4	0.885	INTRON timeout & 1 other
2R	10010517	2R_10010517_SNP [dm3] 2R_14123012_SNP [dm6]	G	A	1.565e^-4	0.885	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3850994	3L_3850994_SNP [dm3] 3L_3850994_SNP [dm6]	G	A	1.566e^-4	0.885	INTRON Awh
2R	16178715	2R_16178715_SNP [dm3] 2R_20291210_SNP [dm6]	G	A	1.566e^-4	0.885	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	16348517	3L_16348517_SNP [dm3] 3L_16355417_SNP [dm6]	T	A	1.572e^-4	0.885	INTRON CG45057
3R	10265983	3R_10265983_SNP [dm3] 3R_14440261_SNP [dm6]	T	A	1.587e^-4	0.885	INTRON cv-c
3R	23647093	3R_23647093_SNP [dm3] 3R_27821371_SNP [dm6]	T	C	1.597e^-4	0.885	INTRON CG34353
2L	9245751	2L_9245751_DEL [dm3] 2L_9245751_DEL [dm6]	TT	T	1.601e^-4	0.885	INTRON tai
3R	9119639	3R_9119639_SNP [dm3] 3R_13293917_SNP [dm6]	A	G	1.616e^-4	0.885	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	15028304	3L_15028304_SNP [dm3] 3L_15035204_SNP [dm6]	T	G	1.620e^-4	0.885	INTRON Sytbeta
2R	10510771	2R_10510771_SNP [dm3] 2R_14623266_SNP [dm6]	C	T	1.624e^-4	0.885	UPSTREAM snoRNA:Me28S-A992 & 4 others DOWNSTREAM snoRNA:Me28S-C3227b & 3 others INTRON Uhg5	TF binding site mE1_TFBS_zfh1
3R	23637587	3R_23637587_SNP [dm3] 3R_27811865_SNP [dm6]	A	T	1.626e^-4	0.885	INTRON CG34353
2R	11070205	2R_11070205_SNP [dm3] 2R_15182700_SNP [dm6]	T	C	1.657e^-4	0.885	INTRON igl
3R	9863847	3R_9863847_SNP [dm3] 3R_14038125_SNP [dm6]	G	A	1.658e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8379940	3R_8379940_SNP [dm3] 3R_12554218_SNP [dm6]	C	T	1.667e^-4	0.885	INTRON Octbeta2R
3R	8953509	3R_8953509_SNP [dm3] 3R_13127787_SNP [dm6]	C	G	1.685e^-4	0.885	NON_SYNONYMOUS_CODING 2mit INTRON timeout
X	18998674	X_18998674_SNP [dm3] X_19104641_SNP [dm6]	G	C	1.692e^-4	0.885	INTERGENIC
2R	9473373	2R_9473373_SNP [dm3] 2R_13585868_SNP [dm6]	C	A	1.698e^-4	0.885	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_ttk mE1_TFBS_zfh1
3R	17654120	3R_17654120_SNP [dm3] 3R_21828398_SNP [dm6]	A	G	1.701e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	18641616	3L_18641616_SNP [dm3] 3L_18648516_SNP [dm6]	C	G	1.701e^-4	0.885	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13783686	2R_13783686_SNP [dm3] 2R_17896181_SNP [dm6]	G	A	1.703e^-4	0.885	DOWNSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15572890	2R_15572890_SNP [dm3] 2R_19685385_SNP [dm6]	C	T	1.704e^-4	0.885	DOWNSTREAM CG15128 INTERGENIC
2R	17360954	2R_17360954_SNP [dm3] 2R_21473449_SNP [dm6]	C	A	1.704e^-4	0.885	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	9139858	3L_9139858_INS [dm3] 3L_9146758_INS [dm6]	G	GCATG	1.704e^-4	0.885	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi
3R	8955269	3R_8955269_SNP [dm3] 3R_13129547_SNP [dm6]	C	A	1.705e^-4	0.885	INTRON timeout & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9535249	3L_9535249_SNP [dm3] 3L_9542149_SNP [dm6]	G	T	1.705e^-4	0.885	DOWNSTREAM Ir67a INTERGENIC
3R	9134156	3R_9134156_SNP [dm3] 3R_13308434_SNP [dm6]	G	T	1.708e^-4	0.885	UPSTREAM CG32473 INTRON CG32473
3R	8937834	3R_8937834_DEL [dm3] 3R_13112112_DEL [dm6]	TT	T	1.709e^-4	0.885	INTRON timeout
3R	10268701	3R_10268701_SNP [dm3] 3R_14442979_SNP [dm6]	G	A	1.710e^-4	0.885	INTRON cv-c
3L	9610851	3L_9610851_SNP [dm3] 3L_9617751_SNP [dm6]	T	A	1.715e^-4	0.885	INTRON LanB2
2L	12056027	2L_12056027_SNP [dm3] 2L_12056027_SNP [dm6]	A	C	1.716e^-4	0.885	UTR_5_PRIME JhI-21 UPSTREAM RpL7-like & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12666730	2R_12666730_SNP [dm3] 2R_16779225_SNP [dm6]	C	T	1.719e^-4	0.885	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC
2R	16276158	2R_16276158_SNP [dm3] 2R_20388653_SNP [dm6]	C	T	1.725e^-4	0.885	INTERGENIC
2L	7712563	2L_7712563_SNP [dm3] 2L_7712563_SNP [dm6]	C	T	1.727e^-4	0.885	SYNONYMOUS_CODING Ntl DOWNSTREAM tRNA:Y1:28C	TF binding site mE1_TFBS_HSA
3R	23646774	3R_23646774_SNP [dm3] 3R_27821052_SNP [dm6]	A	C	1.735e^-4	0.885	INTRON CG34353
3L	18804050	3L_18804050_DEL [dm3] 3L_18810950_DEL [dm6]	ACATA	A	1.736e^-4	0.885	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	16903728	X_16903728_DEL [dm3] X_17009695_DEL [dm6]	AA	A	1.746e^-4	0.885	INTRON CG45002
3R	8907819	3R_8907819_SNP [dm3] 3R_13082097_SNP [dm6]	C	T	1.752e^-4	0.885	INTERGENIC
2R	16178742	2R_16178742_SNP [dm3] 2R_20291237_SNP [dm6]	A	G	1.763e^-4	0.885	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	18188776	3L_18188776_SNP [dm3] 3L_18195676_SNP [dm6]	A	G	1.773e^-4	0.885	UPSTREAM CR45234 INTERGENIC
2R	11924775	2R_11924775_SNP [dm3] 2R_16037270_SNP [dm6]	G	T	1.774e^-4	0.885	INTRON SP2353	TF binding site BDTNP1_TFBS_dl
3R	17978098	3R_17978098_SNP [dm3] 3R_22152376_SNP [dm6]	G	T	1.775e^-4	0.885	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7153656	2L_7153656_SNP [dm3] 2L_7153656_SNP [dm6]	A	G	1.788e^-4	0.885	INTRON Pvf3
X	17081839	X_17081839_SNP [dm3] X_17187806_SNP [dm6]	A	G	1.793e^-4	0.885	INTRON baz
3R	25261907	3R_25261907_SNP [dm3] 3R_29436185_SNP [dm6]	C	T	1.797e^-4	0.885	INTRON Ptp99A
3R	8939333	3R_8939333_SNP [dm3] 3R_13113611_SNP [dm6]	A	T	1.800e^-4	0.885	INTRON timeout
3L	9641662	3L_9641662_SNP [dm3] 3L_9648562_SNP [dm6]	A	T	1.803e^-4	0.885	INTRON fry & 1 other
3L	4171753	3L_4171753_DEL [dm3] 3L_4171753_DEL [dm6]	TAACT	C	1.812e^-4	0.885	INTRON Ero1L
3R	25095199	3R_25095199_SNP [dm3] 3R_29269477_SNP [dm6]	T	A	1.814e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23637652	3R_23637652_SNP [dm3] 3R_27811930_SNP [dm6]	T	C	1.820e^-4	0.885	INTRON CG34353
2L	9575089	2L_9575089_SNP [dm3] 2L_9575089_SNP [dm6]	T	G	1.823e^-4	0.885	SYNONYMOUS_CODING Mtpalpha
2R	9455263	2R_9455263_SNP [dm3] 2R_13567758_SNP [dm6]	C	G	1.823e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	15935511	3L_15935511_SNP [dm3] 3L_15942411_SNP [dm6]	A	T	1.828e^-4	0.885	INTRON Pka-C3
2R	21020619	2R_21020619_SNP [dm3] 2R_25133096_SNP [dm6]	C	T	1.840e^-4	0.885	INTRON lov	transposable element FlyBase
X	5971161	X_5971161_SNP [dm3] X_6077128_SNP [dm6]	G	A	1.859e^-4	0.885	INTRON CG4666
X	13471039	X_13471039_SNP [dm3] X_13577006_SNP [dm6]	C	T	1.869e^-4	0.885	START_GAINED Tango13 UTR_5_PRIME Tango13
3L	16886977	3L_16886977_SNP [dm3] 3L_16893877_SNP [dm6]	G	C	1.871e^-4	0.885	INTRON Lmpt
3R	8862494	3R_8862494_SNP [dm3] 3R_13036772_SNP [dm6]	T	C	1.873e^-4	0.885	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14249967	2L_14249967_SNP [dm3] 2L_14249967_SNP [dm6]	G	A	1.878e^-4	0.885	INTERGENIC
3L	5914660	3L_5914660_SNP [dm3] 3L_5921560_SNP [dm6]	A	C	1.885e^-4	0.885	UPSTREAM CG32407 & 1 other INTERGENIC
3L	12856939	3L_12856939_SNP [dm3] 3L_12863839_SNP [dm6]	T	C	1.888e^-4	0.885	UPSTREAM CG10943 INTERGENIC
3R	8947917	3R_8947917_SNP [dm3] 3R_13122195_SNP [dm6]	A	T	1.891e^-4	0.885	UTR_3_PRIME 2mit INTRON timeout
3L	1944499	3L_1944499_SNP [dm3] 3L_1944499_SNP [dm6]	G	T	1.893e^-4	0.885	NON_SYNONYMOUS_CODING mu2
2R	8866092	2R_8866092_SNP [dm3] 2R_12978587_SNP [dm6]	G	A	1.899e^-4	0.885	INTRON Psc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
3R	26174433	3R_26174433_DEL [dm3] 3R_30348711_DEL [dm6]	CGGCGGGAGTTTGC...	C	1.901e^-4	0.885	INTRON hdc
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	1.912e^-4	0.885	INTRON X11Lbeta
3L	15953101	3L_15953101_SNP [dm3] 3L_15960001_SNP [dm6]	C	T	1.917e^-4	0.885	SYNONYMOUS_CODING CG17032 DOWNSTREAM l_3_72Ab
2R	18372814	2R_18372814_SNP [dm3] 2R_22485309_SNP [dm6]	G	C	1.931e^-4	0.885	NON_SYNONYMOUS_CODING CG4554
X	475482	X_475482_SNP [dm3] X_581449_SNP [dm6]	G	A	1.931e^-4	0.885	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9135883	3R_9135883_SNP [dm3] 3R_13310161_SNP [dm6]	A	C	1.932e^-4	0.885	SYNONYMOUS_CODING CG32473
3L	2350049	3L_2350049_SNP [dm3] 3L_2350049_SNP [dm6]	G	T	1.932e^-4	0.885	INTERGENIC
3R	8935441	3R_8935441_DEL [dm3] 3R_13109719_DEL [dm6]	ACCGGGGCACGG...	A	1.947e^-4	0.885	INTRON timeout
2L	15124473	2L_15124473_INS [dm3] 2L_15124473_INS [dm6]	A	ACA	1.953e^-4	0.885	INTERGENIC
2L	15124477	2L_15124477_INS [dm3] 2L_15124477_INS [dm6]	T	TAACTAAGT	1.953e^-4	0.885	INTERGENIC
3R	8956910	3R_8956910_SNP [dm3] 3R_13131188_SNP [dm6]	T	G	1.955e^-4	0.885	INTRON timeout & 1 other
3L	12563949	3L_12563949_SNP [dm3] 3L_12570849_SNP [dm6]	G	T	1.962e^-4	0.885	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15321978	3R_15321978_SNP [dm3] 3R_19496256_SNP [dm6]	A	T	1.971e^-4	0.885	INTRON Dys
X	6911147	X_6911147_SNP [dm3] X_7017114_SNP [dm6]	G	C	1.976e^-4	0.885	INTERGENIC
3R	13969084	3R_13969084_SNP [dm3] 3R_18143362_SNP [dm6]	C	T	1.986e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12850389	3L_12850389_SNP [dm3] 3L_12857289_SNP [dm6]	G	T	1.987e^-4	0.885	UTR_3_PRIME Ent3 & 1 other DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
X	6698086	X_6698086_SNP [dm3] X_6804053_SNP [dm6]	G	T	1.989e^-4	0.885	UPSTREAM pod1 & 1 other INTRON pod1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24036832	3R_24036832_SNP [dm3] 3R_28211110_SNP [dm6]	T	C	1.989e^-4	0.885	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15337443	2L_15337443_SNP [dm3] 2L_15337443_SNP [dm6]	T	A	1.992e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10745165	3L_10745165_SNP [dm3] 3L_10752065_SNP [dm6]	T	A	1.997e^-4	0.885	INTERGENIC
2L	21196462	2L_21196462_SNP [dm3] 2L_21196462_SNP [dm6]	A	G	1.998e^-4	0.885	INTRON Ret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15124455	2L_15124455_MNP [dm3] 2L_15124455_MNP [dm6]	AAG	GTT	2.002e^-4	0.885	INTERGENIC
3L	8078468	3L_8078468_DEL [dm3] 3L_8085368_DEL [dm6]	GTG	G	2.012e^-4	0.885	INTRON Ect4
3L	10030126	3L_10030126_SNP [dm3] 3L_10037026_SNP [dm6]	G	A	2.012e^-4	0.885	INTRON dpr6
2R	19281306	2R_19281306_SNP [dm3] 2R_23393783_SNP [dm6]	A	T	2.015e^-4	0.885	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2R	21011917	2R_21011917_SNP [dm3] 2R_25124394_SNP [dm6]	C	A	2.018e^-4	0.885	INTRON lov
3L	5944652	3L_5944652_SNP [dm3] 3L_5951552_SNP [dm6]	G	A	2.029e^-4	0.885	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8956615	3R_8956615_SNP [dm3] 3R_13130893_SNP [dm6]	C	T	2.030e^-4	0.885	INTRON timeout & 1 other
3R	9422007	3R_9422007_SNP [dm3] 3R_13596285_SNP [dm6]	A	G	2.031e^-4	0.885	INTERGENIC
3L	17410829	3L_17410829_SNP [dm3] 3L_17417729_SNP [dm6]	C	G	2.031e^-4	0.885	INTRON blot	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2L	14319218	2L_14319218_SNP [dm3] 2L_14319218_SNP [dm6]	G	T	2.039e^-4	0.885	INTRON wb
2L	13433794	2L_13433794_DEL [dm3] 2L_13433794_DEL [dm6]	ATGTG	A	2.041e^-4	0.885	INTRON CG42784
2L	12698596	2L_12698596_SNP [dm3] 2L_12698596_SNP [dm6]	A	C	2.044e^-4	0.885	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10215803	2R_10215803_SNP [dm3] 2R_14328298_SNP [dm6]	G	T	2.051e^-4	0.885	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19228755	X_19228755_SNP [dm3] X_19334722_SNP [dm6]	G	T	2.053e^-4	0.885	INTRON nAChRalpha7
X	13313780	X_13313780_SNP [dm3] X_13419747_SNP [dm6]	G	T	2.058e^-4	0.885	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5574917	3L_5574917_INS [dm3] 3L_5581817_INS [dm6]	C	CA	2.063e^-4	0.885	INTERGENIC
2L	12698594	2L_12698594_SNP [dm3] 2L_12698594_SNP [dm6]	T	A	2.064e^-4	0.885	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24487394	3R_24487394_SNP [dm3] 3R_28661672_SNP [dm6]	G	A	2.066e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22743359	3R_22743359_SNP [dm3] 3R_26917637_SNP [dm6]	G	A	2.074e^-4	0.885	INTRON sda
2R	21011922	2R_21011922_SNP [dm3] 2R_25124399_SNP [dm6]	T	A	2.075e^-4	0.885	INTRON lov
2R	16864746	2R_16864746_SNP [dm3] 2R_20977241_SNP [dm6]	T	C	2.076e^-4	0.885	SYNONYMOUS_CODING CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	8943773	3R_8943773_SNP [dm3] 3R_13118051_SNP [dm6]	T	A	2.083e^-4	0.885	INTRON timeout
2R	6375363	2R_6375363_SNP [dm3] 2R_10487858_SNP [dm6]	A	G	2.084e^-4	0.885	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23637561	3R_23637561_SNP [dm3] 3R_27811839_SNP [dm6]	A	G	2.085e^-4	0.885	INTRON CG34353
X	14303082	X_14303082_SNP [dm3] X_14409049_SNP [dm6]	G	A	2.091e^-4	0.885	INTRON dpr8
3L	9276949	3L_9276949_SNP [dm3] 3L_9283849_SNP [dm6]	C	G	2.092e^-4	0.885	INTRON GluRIB
2L	4489921	2L_4489921_SNP [dm3] 2L_4489921_SNP [dm6]	G	A	2.105e^-4	0.885	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	22203732	X_22203732_SNP [dm3] X_22801896_SNP [dm6]	T	C	2.118e^-4	0.885	INTERGENIC
2L	8443407	2L_8443407_SNP [dm3] 2L_8443407_SNP [dm6]	C	T	2.121e^-4	0.885	SYNONYMOUS_CODING CG31897
3R	6068455	3R_6068455_SNP [dm3] 3R_10242733_SNP [dm6]	G	A	2.123e^-4	0.885	SYNONYMOUS_CODING CG42795
3L	4043800	3L_4043800_INS [dm3] 3L_4043800_INS [dm6]	T	TT	2.127e^-4	0.885	INTERGENIC
3L	11690182	3L_11690182_INS [dm3] 3L_11697082_INS [dm6]	T	TT	2.132e^-4	0.885	UPSTREAM CG11652 DOWNSTREAM CG6053 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	5971158	X_5971158_SNP [dm3] X_6077125_SNP [dm6]	G	A	2.132e^-4	0.885	INTRON CG4666
3L	10695005	3L_10695005_SNP [dm3] 3L_10701905_SNP [dm6]	T	A	2.133e^-4	0.885	INTERGENIC
2R	15193070	2R_15193070_SNP [dm3] 2R_19305565_SNP [dm6]	C	G	2.135e^-4	0.885	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
2R	7395548	2R_7395548_INS [dm3] 2R_11508043_INS [dm6]	A	TT	2.141e^-4	0.885	UTR_3_PRIME inv DOWNSTREAM inv
2L	13740426	2L_13740426_SNP [dm3] 2L_13740426_SNP [dm6]	A	G	2.143e^-4	0.885	INTERGENIC
2R	20044675	2R_20044675_SNP [dm3] 2R_24157152_SNP [dm6]	T	C	2.146e^-4	0.885	SYNONYMOUS_CODING Dat DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_chinmo
3L	1362742	3L_1362742_SNP [dm3] 3L_1362742_SNP [dm6]	A	G	2.150e^-4	0.885	INTRON Ptp61F
3L	7175916	3L_7175916_SNP [dm3] 3L_7182816_SNP [dm6]	A	G	2.156e^-4	0.885	INTRON Dscam2
3R	9222961	3R_9222961_DEL [dm3] 3R_13397239_DEL [dm6]	CC	C	2.157e^-4	0.885	UPSTREAM CG14377 & 1 other INTERGENIC
X	5513150	X_5513150_SNP [dm3] X_5619117_SNP [dm6]	A	G	2.163e^-4	0.885	UPSTREAM RhoGAP5A DOWNSTREAM Mlc-c INTERGENIC
2L	12056138	2L_12056138_SNP [dm3] 2L_12056138_SNP [dm6]	G	A	2.186e^-4	0.885	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	5300535	3L_5300535_SNP [dm3] 3L_5307435_SNP [dm6]	T	A	2.188e^-4	0.885	INTERGENIC
3L	9500437	3L_9500437_SNP [dm3] 3L_9507337_SNP [dm6]	T	G	2.188e^-4	0.885	UTR_3_PRIME CG3408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14957457	2R_14957457_SNP [dm3] 2R_19069952_SNP [dm6]	T	A	2.189e^-4	0.885	INTRON 5-HT1A
2L	13616970	2L_13616970_SNP [dm3] 2L_13616970_SNP [dm6]	C	T	2.192e^-4	0.885	INTRON kuz
3L	7078581	3L_7078581_SNP [dm3] 3L_7085481_SNP [dm6]	T	A	2.192e^-4	0.885	DOWNSTREAM Cpr65Ea INTERGENIC
2L	1633335	2L_1633335_SNP [dm3] 2L_1633335_SNP [dm6]	T	A	2.211e^-4	0.885	INTERGENIC
3L	1409598	3L_1409598_SNP [dm3] 3L_1409598_SNP [dm6]	C	T	2.215e^-4	0.885	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9003575	3L_9003575_SNP [dm3] 3L_9010475_SNP [dm6]	G	A	2.224e^-4	0.885	UPSTREAM CG5194 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16905463	X_16905463_SNP [dm3] X_17011430_SNP [dm6]	C	T	2.228e^-4	0.885	INTRON CG45002
X	19118629	X_19118629_SNP [dm3] X_19224596_SNP [dm6]	G	T	2.235e^-4	0.885	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3644605	2L_3644605_SNP [dm3] 2L_3644605_SNP [dm6]	A	G	2.237e^-4	0.885	INTRON for
2L	3245968	2L_3245968_SNP [dm3] 2L_3245968_SNP [dm6]	T	A	2.237e^-4	0.885	INTERGENIC
2R	4864932	2R_4864932_SNP [dm3] 2R_8977427_SNP [dm6]	C	G	2.241e^-4	0.885	INTRON CG8213	TF binding site mE1_TFBS_Trl
3L	6847733	3L_6847733_SNP [dm3] 3L_6854633_SNP [dm6]	A	G	2.250e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	22204202	X_22204202_SNP [dm3] X_22802366_SNP [dm6]	C	T	2.261e^-4	0.885	INTERGENIC
3R	26523712	3R_26523712_SNP [dm3] 3R_30697990_SNP [dm6]	G	A	2.268e^-4	0.885	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23767767	3L_23767767_SNP [dm3] 3L_23774667_SNP [dm6]	A	G	2.270e^-4	0.885	INTERGENIC	transposable element FlyBase
X	13664429	X_13664429_DEL [dm3] X_13770396_DEL [dm6]	AG	A	2.275e^-4	0.885	INTRON rdgB
2R	21000894	2R_21000894_SNP [dm3] 2R_25113371_SNP [dm6]	A	C	2.278e^-4	0.885	INTRON lov	TF binding site BDTNP1_TFBS_z
3R	25850577	3R_25850577_SNP [dm3] 3R_30024855_SNP [dm6]	A	T	2.281e^-4	0.885	INTRON Axn
X	18369693	X_18369693_SNP [dm3] X_18475660_SNP [dm6]	C	A	2.282e^-4	0.885	INTRON CG32547
X	18748267	X_18748267_SNP [dm3] X_18854234_SNP [dm6]	A	G	2.287e^-4	0.885	SYNONYMOUS_CODING CG34422	TF binding site mE1_TFBS_chinmo
2R	5261751	2R_5261751_SNP [dm3] 2R_9374246_SNP [dm6]	G	C	2.287e^-4	0.885	UTR_5_PRIME CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	2.289e^-4	0.885	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
3R	8954119	3R_8954119_SNP [dm3] 3R_13128397_SNP [dm6]	C	T	2.293e^-4	0.885	SYNONYMOUS_CODING 2mit INTRON timeout
3R	23646407	3R_23646407_SNP [dm3] 3R_27820685_SNP [dm6]	G	C	2.293e^-4	0.885	INTRON CG34353
2R	16179077	2R_16179077_SNP [dm3] 2R_20291572_SNP [dm6]	T	C	2.294e^-4	0.885	UPSTREAM CR44638 INTRON Cpr56F
2L	14177519	2L_14177519_SNP [dm3] 2L_14177519_SNP [dm6]	A	G	2.298e^-4	0.885	INTRON CG43333
3R	6853124	3R_6853124_DEL [dm3] 3R_11027402_DEL [dm6]	AAAAG	TCTT	2.298e^-4	0.885	INTRON CG34114
X	12906144	X_12906144_DEL [dm3] X_13012111_DEL [dm6]	GTGTGTGTGTGTGTG...	G	2.299e^-4	0.885	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4171955	3L_4171955_SNP [dm3] 3L_4171955_SNP [dm6]	A	C	2.307e^-4	0.885	INTRON Ero1L
3R	23637651	3R_23637651_SNP [dm3] 3R_27811929_SNP [dm6]	A	C	2.317e^-4	0.885	INTRON CG34353
3R	8966796	3R_8966796_DEL [dm3] 3R_13141074_DEL [dm6]	TGTGTCGCTGGGAAATTT...	T	2.321e^-4	0.885	INTRON timeout & 2 others
3L	14658156	3L_14658156_SNP [dm3] 3L_14665056_SNP [dm6]	C	T	2.327e^-4	0.885	SYNONYMOUS_CODING dlp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7395545	2R_7395545_SNP [dm3] 2R_11508040_SNP [dm6]	C	A	2.336e^-4	0.885	UTR_3_PRIME inv DOWNSTREAM inv
3L	1977838	3L_1977838_SNP [dm3] 3L_1977838_SNP [dm6]	G	C	2.341e^-4	0.885	INTERGENIC
3R	24036614	3R_24036614_SNP [dm3] 3R_28210892_SNP [dm6]	A	T	2.341e^-4	0.885	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14062142	2R_14062142_SNP [dm3] 2R_18174637_SNP [dm6]	T	A	2.342e^-4	0.885	UTR_3_PRIME CG10916 DOWNSTREAM CG5726	TF binding site mE1_TFBS_cad
2R	11735585	2R_11735585_SNP [dm3] 2R_15848080_SNP [dm6]	C	T	2.343e^-4	0.885	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14687332	3L_14687332_SNP [dm3] 3L_14694232_SNP [dm6]	C	T	2.346e^-4	0.885	INTRON ome
2R	5262147	2R_5262147_SNP [dm3] 2R_9374642_SNP [dm6]	C	T	2.350e^-4	0.885	INTRON CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8934931	3R_8934931_INS [dm3] 3R_13109209_INS [dm6]	G	GA	2.351e^-4	0.885	INTRON timeout
2L	14409796	2L_14409796_SNP [dm3] 2L_14409796_SNP [dm6]	C	A	2.365e^-4	0.885	UPSTREAM elB EXON CR44733	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3724365	3L_3724365_SNP [dm3] 3L_3724365_SNP [dm6]	G	A	2.367e^-4	0.885	INTRON CG32264
3L	11315139	3L_11315139_SNP [dm3] 3L_11322039_SNP [dm6]	G	C	2.382e^-4	0.885	UPSTREAM CG6168 INTERGENIC
3L	9168349	3L_9168349_SNP [dm3] 3L_9175249_SNP [dm6]	G	T	2.398e^-4	0.885	INTRON Rdl
3L	12646530	3L_12646530_SNP [dm3] 3L_12653430_SNP [dm6]	C	G	2.400e^-4	0.885	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1361975	3L_1361975_SNP [dm3] 3L_1361975_SNP [dm6]	G	A	2.406e^-4	0.885	INTRON Ptp61F
2L	17605564	2L_17605564_SNP [dm3] 2L_17605564_SNP [dm6]	C	T	2.410e^-4	0.885	DOWNSTREAM CR44412 INTERGENIC
X	17081832	X_17081832_SNP [dm3] X_17187799_SNP [dm6]	T	A	2.415e^-4	0.885	INTRON baz
X	18121513	X_18121513_SNP [dm3] X_18227480_SNP [dm6]	T	A	2.418e^-4	0.885	EXON CR45622
2L	4726312	2L_4726312_SNP [dm3] 2L_4726312_SNP [dm6]	G	T	2.419e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23934448	3R_23934448_SNP [dm3] 3R_28108726_SNP [dm6]	C	A	2.422e^-4	0.885	INTERGENIC
3L	4601667	3L_4601667_SNP [dm3] 3L_4601667_SNP [dm6]	C	T	2.427e^-4	0.885	INTRON Src64B
2L	12056075	2L_12056075_SNP [dm3] 2L_12056075_SNP [dm6]	G	A	2.437e^-4	0.885	UPSTREAM RpL7-like & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	8941399	3R_8941399_SNP [dm3] 3R_13115677_SNP [dm6]	C	A	2.438e^-4	0.885	INTRON timeout
3R	15016748	3R_15016748_SNP [dm3] 3R_19191026_SNP [dm6]	T	C	2.442e^-4	0.885	INTRON CG31475
3R	9951312	3R_9951312_SNP [dm3] 3R_14125590_SNP [dm6]	A	G	2.442e^-4	0.885	UPSTREAM RpII140 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	814562	X_814562_SNP [dm3] X_920529_SNP [dm6]	C	G	2.448e^-4	0.885	INTRON CG43867
X	18069222	X_18069222_SNP [dm3] X_18175189_SNP [dm6]	T	G	2.453e^-4	0.885	DOWNSTREAM Frq1 INTERGENIC
2L	12697942	2L_12697942_SNP [dm3] 2L_12697942_SNP [dm6]	T	C	2.458e^-4	0.885	SYNONYMOUS_CODING PICK1 UPSTREAM CG5781 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14060914	2R_14060914_SNP [dm3] 2R_18173409_SNP [dm6]	C	T	2.462e^-4	0.885	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
2L	1309652	2L_1309652_SNP [dm3] 2L_1309652_SNP [dm6]	A	C	2.466e^-4	0.885	INTERGENIC
2R	17096310	2R_17096310_SNP [dm3] 2R_21208805_SNP [dm6]	C	A	2.466e^-4	0.885	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23536050	3L_23536050_SNP [dm3] 3L_23542950_SNP [dm6]	T	C	2.469e^-4	0.885	INTERGENIC
2L	1228467	2L_1228467_SNP [dm3] 2L_1228467_SNP [dm6]	T	C	2.491e^-4	0.885	SPLICE_SITE_REGION CG42329 SYNONYMOUS_CODING CG42329
3R	26534154	3R_26534154_SNP [dm3] 3R_30708432_SNP [dm6]	C	T	2.510e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1213308	X_1213308_SNP [dm3] X_1319275_SNP [dm6]	T	A	2.514e^-4	0.885	INTRON DAAM
2R	10748218	2R_10748218_SNP [dm3] 2R_14860713_SNP [dm6]	C	G	2.514e^-4	0.885	UTR_5_PRIME U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14720658	3R_14720658_SNP [dm3] 3R_18894936_SNP [dm6]	C	T	2.518e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6792710	2R_6792710_SNP [dm3] 2R_10905205_SNP [dm6]	A	T	2.537e^-4	0.885	INTRON CG12943
2L	3828039	2L_3828039_SNP [dm3] 2L_3828039_SNP [dm6]	G	T	2.538e^-4	0.885	DOWNSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	23934583	3R_23934583_SNP [dm3] 3R_28108861_SNP [dm6]	G	C	2.541e^-4	0.885	INTERGENIC
3R	19049810	3R_19049810_SNP [dm3] 3R_23224088_SNP [dm6]	A	T	2.550e^-4	0.885	INTRON cnc
2L	15124385	2L_15124385_INS [dm3] 2L_15124385_INS [dm6]	A	AAGCTATAATA...	2.551e^-4	0.885	INTERGENIC
2R	9906175	2R_9906175_SNP [dm3] 2R_14018670_SNP [dm6]	C	T	2.570e^-4	0.885	INTRON mam
3R	26499368	3R_26499368_INS [dm3] 3R_30673646_INS [dm6]	CA	GCGAAAATTGTTGATGCCGC...	2.580e^-4	0.885	INTERGENIC
X	19011377	X_19011377_SNP [dm3] X_19117344_SNP [dm6]	A	T	2.580e^-4	0.885	INTERGENIC
2L	2711967	2L_2711967_SNP [dm3] 2L_2711967_SNP [dm6]	A	T	2.586e^-4	0.885	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17111240	2R_17111240_SNP [dm3] 2R_21223735_SNP [dm6]	G	C	2.589e^-4	0.885	NON_SYNONYMOUS_CODING ASPP INTRON ASPP
X	12593377	X_12593377_SNP [dm3] X_12699344_SNP [dm6]	G	T	2.589e^-4	0.885	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7120243	2R_7120243_SNP [dm3] 2R_11232738_SNP [dm6]	C	T	2.589e^-4	0.885	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	4038624	X_4038624_INS [dm3] X_4144591_INS [dm6]	A	AA	2.590e^-4	0.885	INTRON Fas2
2L	12447770	2L_12447770_SNP [dm3] 2L_12447770_SNP [dm6]	A	G	2.598e^-4	0.885	SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Eb
3L	13142405	3L_13142405_SNP [dm3] 3L_13149305_SNP [dm6]	C	T	2.600e^-4	0.885	INTERGENIC
3R	2311086	3R_2311086_SNP [dm3] 3R_6485364_SNP [dm6]	A	T	2.602e^-4	0.885	INTRON CG15186
3R	9034446	3R_9034446_SNP [dm3] 3R_13208724_SNP [dm6]	A	T	2.606e^-4	0.885	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
X	523007	X_523007_DEL [dm3] X_628974_DEL [dm6]	GG	G	2.609e^-4	0.885	UPSTREAM l_1_1Bi & 1 other DOWNSTREAM CG17829 INTRON RpL36	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6243980	2L_6243980_SNP [dm3] 2L_6243980_SNP [dm6]	C	G	2.631e^-4	0.885	INTERGENIC
3L	2397516	3L_2397516_INS [dm3] 3L_2397516_INS [dm6]	G	AT	2.632e^-4	0.885	INTRON CG45186	TF binding site mE1_TFBS_inv
X	13933219	X_13933219_SNP [dm3] X_14039186_SNP [dm6]	C	A	2.646e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4038653	X_4038653_SNP [dm3] X_4144620_SNP [dm6]	A	G	2.652e^-4	0.885	INTRON Fas2
3L	569917	3L_569917_SNP [dm3] 3L_569917_SNP [dm6]	G	T	2.652e^-4	0.885	SYNONYMOUS_CODING hipk	TF binding site mE1_TFBS_cad
3R	23637570	3R_23637570_SNP [dm3] 3R_27811848_SNP [dm6]	G	T	2.654e^-4	0.885	INTRON CG34353
3L	14650012	3L_14650012_SNP [dm3] 3L_14656912_SNP [dm6]	T	G	2.658e^-4	0.885	INTRON dlp	TF binding site mE1_TFBS_cad
2L	7350909	2L_7350909_SNP [dm3] 2L_7350909_SNP [dm6]	A	G	2.658e^-4	0.885	INTRON Wnt6
2R	18875238	2R_18875238_SNP [dm3] 2R_22987715_SNP [dm6]	T	A	2.662e^-4	0.885	INTRON twi
3R	8948981	3R_8948981_SNP [dm3] 3R_13123259_SNP [dm6]	G	T	2.674e^-4	0.885	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3L	6312967	3L_6312967_SNP [dm3] 3L_6319867_SNP [dm6]	G	T	2.676e^-4	0.885	UPSTREAM Or65a INTERGENIC	regulatory region REDfly_CRMs
2L	1551236	2L_1551236_SNP [dm3] 2L_1551236_SNP [dm6]	A	G	2.678e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23637628	3R_23637628_SNP [dm3] 3R_27811906_SNP [dm6]	T	C	2.682e^-4	0.885	INTRON CG34353
2L	11772267	2L_11772267_DEL [dm3] 2L_11772267_DEL [dm6]	GTATCCATAACT...	G	2.699e^-4	0.885	INTERGENIC
3L	9500449	3L_9500449_SNP [dm3] 3L_9507349_SNP [dm6]	T	A	2.700e^-4	0.885	UTR_3_PRIME CG3408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4690579	2R_4690579_SNP [dm3] 2R_8803074_SNP [dm6]	C	T	2.700e^-4	0.885	INTRON sns	TF binding site BDTNP1_TFBS_twi
2R	8123257	2R_8123257_SNP [dm3] 2R_12235752_SNP [dm6]	G	T	2.711e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	8935456	3R_8935456_DEL [dm3] 3R_13109734_DEL [dm6]	AGGT	A	2.711e^-4	0.885	INTRON timeout
3R	8935461	3R_8935461_DEL [dm3] 3R_13109739_DEL [dm6]	CGAAAGCA	C	2.711e^-4	0.885	INTRON timeout
3R	8935476	3R_8935476_INS [dm3] 3R_13109754_INS [dm6]	T	TTG	2.711e^-4	0.885	INTRON timeout
3L	5870482	3L_5870482_INS [dm3] 3L_5877382_INS [dm6]	T	TT	2.721e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12195075	X_12195075_SNP [dm3] X_12301042_SNP [dm6]	T	C	2.730e^-4	0.885	INTRON Ten-a
2L	13433776	2L_13433776_SNP [dm3] 2L_13433776_SNP [dm6]	T	C	2.740e^-4	0.885	INTRON CG42784
X	16957181	X_16957181_INS [dm3] X_17063148_INS [dm6]	A	AA	2.742e^-4	0.885	INTRON CG45002
X	17081827	X_17081827_SNP [dm3] X_17187794_SNP [dm6]	G	T	2.750e^-4	0.885	INTRON baz
2R	16871851	2R_16871851_DEL [dm3] 2R_20984346_DEL [dm6]	TATATT	CGCA	2.752e^-4	0.885	UTR_3_PRIME CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_chinmo
2L	9212245	2L_9212245_SNP [dm3] 2L_9212245_SNP [dm6]	A	T	2.754e^-4	0.885	INTRON tai
2L	17605568	2L_17605568_INS [dm3] 2L_17605568_INS [dm6]	T	TTTTTTGT	2.761e^-4	0.885	DOWNSTREAM CR44412 INTERGENIC
2L	13433684	2L_13433684_SNP [dm3] 2L_13433684_SNP [dm6]	G	A	2.763e^-4	0.885	INTRON CG42784
X	8288747	X_8288747_SNP [dm3] X_8394714_SNP [dm6]	G	T	2.769e^-4	0.885	INTERGENIC
2R	10548055	2R_10548055_SNP [dm3] 2R_14660550_SNP [dm6]	G	A	2.772e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8954627	3R_8954627_SNP [dm3] 3R_13128905_SNP [dm6]	C	T	2.792e^-4	0.885	INTRON timeout & 1 other
2R	11735896	2R_11735896_SNP [dm3] 2R_15848391_SNP [dm6]	T	A	2.794e^-4	0.885	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3L	4418627	3L_4418627_SNP [dm3] 3L_4418627_SNP [dm6]	A	G	2.797e^-4	0.885	UPSTREAM DOR INTRON DOR
2L	9212217	2L_9212217_SNP [dm3] 2L_9212217_SNP [dm6]	T	A	2.803e^-4	0.885	INTRON tai
X	6530203	X_6530203_SNP [dm3] X_6636170_SNP [dm6]	G	A	2.815e^-4	0.885	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
X	12163421	X_12163421_SNP [dm3] X_12269388_SNP [dm6]	G	A	2.815e^-4	0.885	INTRON Ten-a
2R	8610708	2R_8610708_SNP [dm3] 2R_12723203_SNP [dm6]	T	A	2.815e^-4	0.885	INTRON CG42663
3R	17616011	3R_17616011_SNP [dm3] 3R_21790289_SNP [dm6]	A	T	2.818e^-4	0.885	INTRON CASK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3279142	3L_3279142_SNP [dm3] 3L_3279142_SNP [dm6]	G	A	2.830e^-4	0.885	INTERGENIC
3R	8958954	3R_8958954_SNP [dm3] 3R_13133232_SNP [dm6]	T	A	2.833e^-4	0.885	UPSTREAM 2mit INTRON timeout & 2 others
X	16846017	X_16846017_SNP [dm3] X_16951984_SNP [dm6]	C	A	2.845e^-4	0.885	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	21011925	2R_21011925_SNP [dm3] 2R_25124402_SNP [dm6]	T	C	2.857e^-4	0.885	INTRON lov
3L	3711173	3L_3711173_MNP [dm3] 3L_3711173_MNP [dm6]	GCAG	TTGC	2.858e^-4	0.885	INTERGENIC
3L	3711178	3L_3711178_SNP [dm3] 3L_3711178_SNP [dm6]	G	C	2.858e^-4	0.885	INTERGENIC
3L	3711180	3L_3711180_MNP [dm3] 3L_3711180_MNP [dm6]	CACAAAAA	TTTTTGTG	2.858e^-4	0.885	INTERGENIC
2L	1731092	2L_1731092_SNP [dm3] 2L_1731092_SNP [dm6]	C	T	2.860e^-4	0.885	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other	TF binding site mE1_TFBS_cad
2L	13952049	2L_13952049_SNP [dm3] 2L_13952049_SNP [dm6]	G	T	2.861e^-4	0.885	INTRON Ance-3
3L	9856868	3L_9856868_DEL [dm3] 3L_9863768_DEL [dm6]	GG	G	2.865e^-4	0.885	SPLICE_SITE_REGION iPLA2-VIA UPSTREAM CG8108 INTRON iPLA2-VIA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	6491458	3R_6491458_SNP [dm3] 3R_10665736_SNP [dm6]	G	A	2.867e^-4	0.885	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	7120251	2R_7120251_DEL [dm3] 2R_11232746_DEL [dm6]	TT	T	2.891e^-4	0.885	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	8452388	2L_8452388_SNP [dm3] 2L_8452388_SNP [dm6]	G	T	2.900e^-4	0.885	UPSTREAM fu12 INTRON fu12
3L	10246215	3L_10246215_SNP [dm3] 3L_10253115_SNP [dm6]	T	G	2.902e^-4	0.885	INTERGENIC
2L	9212239	2L_9212239_INS [dm3] 2L_9212239_INS [dm6]	A	AGTTGGAAA	2.906e^-4	0.885	INTRON tai
3R	23637613	3R_23637613_SNP [dm3] 3R_27811891_SNP [dm6]	T	C	2.918e^-4	0.885	INTRON CG34353
3R	23637615	3R_23637615_SNP [dm3] 3R_27811893_SNP [dm6]	G	T	2.918e^-4	0.885	INTRON CG34353
3R	23637617	3R_23637617_DEL [dm3] 3R_27811895_DEL [dm6]	GGG	G	2.918e^-4	0.885	INTRON CG34353
3L	11174988	3L_11174988_SNP [dm3] 3L_11181888_SNP [dm6]	T	G	2.931e^-4	0.885	INTRON GlcAT-P
3L	22006609	3L_22006609_SNP [dm3] 3L_22013509_SNP [dm6]	A	C	2.932e^-4	0.885	INTERGENIC
3L	10926036	3L_10926036_SNP [dm3] 3L_10932936_SNP [dm6]	C	A	2.935e^-4	0.885	INTERGENIC
3L	12607905	3L_12607905_SNP [dm3] 3L_12614805_SNP [dm6]	G	A	2.935e^-4	0.885	INTRON caup	TF binding site mE1_TFBS_Stat92E
2R	6674033	2R_6674033_SNP [dm3] 2R_10786528_SNP [dm6]	C	G	2.936e^-4	0.885	UPSTREAM CR44300 & 1 other DOWNSTREAM CR44299 INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1247080	2L_1247080_SNP [dm3] 2L_1247080_SNP [dm6]	C	T	2.937e^-4	0.885	INTERGENIC
2R	7120241	2R_7120241_SNP [dm3] 2R_11232736_SNP [dm6]	A	G	2.938e^-4	0.885	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	14307189	2L_14307189_SNP [dm3] 2L_14307189_SNP [dm6]	A	G	2.945e^-4	0.885	INTRON wb
3L	8637623	3L_8637623_SNP [dm3] 3L_8644523_SNP [dm6]	C	T	2.952e^-4	0.885	DOWNSTREAM Cpr66D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15349030	3L_15349030_SNP [dm3] 3L_15355930_SNP [dm6]	C	T	2.959e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6347881	3R_6347881_SNP [dm3] 3R_10522159_SNP [dm6]	T	C	2.964e^-4	0.885	INTRON hth
2R	12462763	2R_12462763_SNP [dm3] 2R_16575258_SNP [dm6]	C	T	2.964e^-4	0.885	SYNONYMOUS_CODING CG8317	TF binding site mE1_TFBS_inv
2L	3398290	2L_3398290_SNP [dm3] 2L_3398290_SNP [dm6]	G	A	2.970e^-4	0.885	SYNONYMOUS_CODING CG34175 UPSTREAM CR44792
3R	20855685	3R_20855685_SNP [dm3] 3R_25029963_SNP [dm6]	T	C	2.983e^-4	0.885	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
2L	1146738	2L_1146738_SNP [dm3] 2L_1146738_SNP [dm6]	C	T	2.993e^-4	0.885	SYNONYMOUS_CODING MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8950409	3R_8950409_SNP [dm3] 3R_13124687_SNP [dm6]	G	T	3.000e^-4	0.885	UTR_3_PRIME 2mit INTRON timeout
3R	25074561	3R_25074561_SNP [dm3] 3R_29248839_SNP [dm6]	C	G	3.002e^-4	0.885	UTR_5_PRIME SP1029 INTRON SP1029
2L	4633269	2L_4633269_SNP [dm3] 2L_4633269_SNP [dm6]	A	G	3.010e^-4	0.885	DOWNSTREAM CR45452 INTERGENIC	TF binding site mE1_TFBS_inv
3R	23934202	3R_23934202_SNP [dm3] 3R_28108480_SNP [dm6]	G	A	3.015e^-4	0.885	INTERGENIC
2R	10029195	2R_10029195_SNP [dm3] 2R_14141690_SNP [dm6]	A	G	3.018e^-4	0.885	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14041122	3R_14041122_SNP [dm3] 3R_18215400_SNP [dm6]	A	T	3.019e^-4	0.885	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3L	1744319	3L_1744319_SNP [dm3] 3L_1744319_SNP [dm6]	G	A	3.025e^-4	0.885	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10217476	3L_10217476_SNP [dm3] 3L_10224376_SNP [dm6]	A	G	3.033e^-4	0.885	INTRON scramb1
X	17176368	X_17176368_SNP [dm3] X_17282335_SNP [dm6]	T	C	3.040e^-4	0.885	NON_SYNONYMOUS_CODING CG8664 UPSTREAM CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11735874	2R_11735874_SNP [dm3] 2R_15848369_SNP [dm6]	C	A	3.044e^-4	0.885	UPSTREAM tun INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3L	10506313	3L_10506313_SNP [dm3] 3L_10513213_SNP [dm6]	G	A	3.053e^-4	0.885	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	12046155	3R_12046155_SNP [dm3] 3R_16220433_SNP [dm6]	C	T	3.054e^-4	0.885	INTERGENIC
X	17988644	X_17988644_SNP [dm3] X_18094611_SNP [dm6]	G	A	3.056e^-4	0.885	UTR_5_PRIME RhoGAP16F INTRON RhoGAP16F	TF binding site BDTNP1_TFBS_dl
2L	2395520	2L_2395520_SNP [dm3] 2L_2395520_SNP [dm6]	T	A	3.060e^-4	0.885	INTRON VGlut
3R	21784727	3R_21784727_SNP [dm3] 3R_25959005_SNP [dm6]	T	A	3.061e^-4	0.885	UPSTREAM CG14540 INTERGENIC
2L	3737240	2L_3737240_SNP [dm3] 2L_3737240_SNP [dm6]	A	G	3.063e^-4	0.885	INTRON CG10019
2L	21806726	2L_21806726_SNP [dm3] 2L_21806726_SNP [dm6]	A	G	3.064e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16654580	X_16654580_SNP [dm3] X_16760547_SNP [dm6]	G	A	3.069e^-4	0.885	INTRON if	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27838468	3R_27838468_SNP [dm3] 3R_32012746_SNP [dm6]	G	A	3.077e^-4	0.885	INTRON heph EXON CR45556	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20855684	3R_20855684_SNP [dm3] 3R_25029962_SNP [dm6]	A	G	3.083e^-4	0.885	DOWNSTREAM Hr96 INTRON Smg6	TF binding site BDTNP1_TFBS_twi
3L	1951458	3L_1951458_SNP [dm3] 3L_1951458_SNP [dm6]	C	A	3.085e^-4	0.885	NON_SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6114693	2R_6114693_SNP [dm3] 2R_10227188_SNP [dm6]	G	A	3.086e^-4	0.885	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
X	17177728	X_17177728_SNP [dm3] X_17283695_SNP [dm6]	A	G	3.097e^-4	0.885	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
2R	703729	2R_703729_SNP [dm3] 2R_4816224_SNP [dm6]	C	G	3.112e^-4	0.885	UTR_3_PRIME CG17528	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4171567	3L_4171567_SNP [dm3] 3L_4171567_SNP [dm6]	T	G	3.112e^-4	0.885	INTRON Ero1L
3R	9122327	3R_9122327_SNP [dm3] 3R_13296605_SNP [dm6]	A	C	3.119e^-4	0.885	SYNONYMOUS_CODING CG8773
3R	8957051	3R_8957051_DEL [dm3] 3R_13131329_DEL [dm6]	TT	T	3.133e^-4	0.885	INTRON timeout & 1 other
2L	17605562	2L_17605562_SNP [dm3] 2L_17605562_SNP [dm6]	G	A	3.138e^-4	0.885	DOWNSTREAM CR44412 INTERGENIC
2R	8463654	2R_8463654_SNP [dm3] 2R_12576149_SNP [dm6]	G	A	3.158e^-4	0.885	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3L	14584761	3L_14584761_SNP [dm3] 3L_14591661_SNP [dm6]	A	C	3.177e^-4	0.885	INTRON HGTX	TF binding site BDTNP1_TFBS_da
2R	17096454	2R_17096454_SNP [dm3] 2R_21208949_SNP [dm6]	A	C	3.178e^-4	0.885	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2R	17096460	2R_17096460_SNP [dm3] 2R_21208955_SNP [dm6]	T	A	3.178e^-4	0.885	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	11110457	2L_11110457_SNP [dm3] 2L_11110457_SNP [dm6]	T	G	3.179e^-4	0.885	UTR_3_PRIME l_2_gd1 DOWNSTREAM CG6201
X	13664410	X_13664410_SNP [dm3] X_13770377_SNP [dm6]	T	G	3.181e^-4	0.885	INTRON rdgB
2R	10657782	2R_10657782_SNP [dm3] 2R_14770277_SNP [dm6]	T	C	3.186e^-4	0.885	START_GAINED CG42254 UTR_5_PRIME CG42254 UPSTREAM Spred & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	9720536	3R_9720536_SNP [dm3] 3R_13894814_SNP [dm6]	A	T	3.204e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	22204228	X_22204228_SNP [dm3] X_22802392_SNP [dm6]	G	A	3.205e^-4	0.885	INTERGENIC
2R	17360940	2R_17360940_SNP [dm3] 2R_21473435_SNP [dm6]	C	T	3.205e^-4	0.885	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	12420157	2L_12420157_SNP [dm3] 2L_12420157_SNP [dm6]	G	T	3.206e^-4	0.885	INTRON vir-1
3R	23637610	3R_23637610_SNP [dm3] 3R_27811888_SNP [dm6]	A	C	3.210e^-4	0.885	INTRON CG34353
X	17908787	X_17908787_SNP [dm3] X_18014754_SNP [dm6]	G	A	3.213e^-4	0.885	UPSTREAM Sh INTRON Sh
3L	10992284	3L_10992284_INS [dm3] 3L_10999184_INS [dm6]	A	AA	3.218e^-4	0.885	INTRON klu	TF binding site mE1_TFBS_cad
3L	5336512	3L_5336512_SNP [dm3] 3L_5343412_SNP [dm6]	G	A	3.223e^-4	0.885	DOWNSTREAM lama INTERGENIC
3R	19653430	3R_19653430_SNP [dm3] 3R_23827708_SNP [dm6]	A	T	3.225e^-4	0.885	UPSTREAM snRNA:U1:95Cb INTRON CG34355	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	440093	3L_440093_SNP [dm3] 3L_440093_SNP [dm6]	G	T	3.226e^-4	0.885	INTRON klar	TF binding site mE1_TFBS_sens
3R	23400707	3R_23400707_SNP [dm3] 3R_27574985_SNP [dm6]	T	C	3.230e^-4	0.885	INTRON wdb
3R	8961368	3R_8961368_SNP [dm3] 3R_13135646_SNP [dm6]	G	C	3.232e^-4	0.885	INTRON timeout & 2 others
2L	664234	2L_664234_SNP [dm3] 2L_664234_SNP [dm6]	C	A	3.235e^-4	0.885	INTRON ds
X	19118610	X_19118610_INS [dm3] X_19224577_INS [dm6]	G	GTG	3.239e^-4	0.885	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4835555	2R_4835555_SNP [dm3] 2R_8948050_SNP [dm6]	A	T	3.246e^-4	0.885	UTR_3_PRIME CG33199 UPSTREAM CG8230 DOWNSTREAM CG33199 & 1 other	TF binding site mE1_TFBS_HSA
X	16800280	X_16800280_SNP [dm3] X_16906247_SNP [dm6]	C	T	3.248e^-4	0.885	EXON CR44754
2L	16109965	2L_16109965_SNP [dm3] 2L_16109965_SNP [dm6]	A	G	3.251e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8949679	3R_8949679_SNP [dm3] 3R_13123957_SNP [dm6]	C	T	3.253e^-4	0.885	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
2R	5261622	2R_5261622_SNP [dm3] 2R_9374117_SNP [dm6]	G	C	3.254e^-4	0.885	SYNONYMOUS_CODING CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7773536	3R_7773536_SNP [dm3] 3R_11947814_SNP [dm6]	A	T	3.255e^-4	0.885	INTRON Cad87A	TF binding site BDTNP1_TFBS_dl
3R	7776359	3R_7776359_SNP [dm3] 3R_11950637_SNP [dm6]	A	C	3.258e^-4	0.885	NON_SYNONYMOUS_CODING CG31211	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9049484	3R_9049484_SNP [dm3] 3R_13223762_SNP [dm6]	A	T	3.265e^-4	0.885	DOWNSTREAM Ace INTRON Ace
2R	19048182	2R_19048182_SNP [dm3] 2R_23160659_SNP [dm6]	C	T	3.266e^-4	0.885	INTRON CG9899
2R	2686906	2R_2686906_SNP [dm3] 2R_6799401_SNP [dm6]	A	T	3.267e^-4	0.885	UPSTREAM Epac INTERGENIC
3R	23637579	3R_23637579_SNP [dm3] 3R_27811857_SNP [dm6]	G	C	3.267e^-4	0.885	INTRON CG34353
3L	2123554	3L_2123554_SNP [dm3] 3L_2123554_SNP [dm6]	T	C	3.268e^-4	0.885	INTRON zormin
3R	10266156	3R_10266156_INS [dm3] 3R_14440434_INS [dm6]	T	TT	3.270e^-4	0.885	INTRON cv-c
2R	15195564	2R_15195564_SNP [dm3] 2R_19308059_SNP [dm6]	A	T	3.271e^-4	0.885	UTR_3_PRIME EndoB DOWNSTREAM CG7461
2L	7406946	2L_7406946_SNP [dm3] 2L_7406946_SNP [dm6]	T	A	3.273e^-4	0.885	INTRON CG5177
2L	15774091	2L_15774091_SNP [dm3] 2L_15774091_SNP [dm6]	A	G	3.275e^-4	0.885	UPSTREAM CG31826 INTERGENIC	TF binding site mE1_TFBS_Kr
X	9596911	X_9596911_SNP [dm3] X_9702878_SNP [dm6]	T	C	3.276e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	5714140	2L_5714140_SNP [dm3] 2L_5714140_SNP [dm6]	A	G	3.278e^-4	0.885	DOWNSTREAM CG7236 INTERGENIC
2R	8689843	2R_8689843_SNP [dm3] 2R_12802338_SNP [dm6]	G	A	3.281e^-4	0.885	DOWNSTREAM sca INTERGENIC
3R	23637612	3R_23637612_SNP [dm3] 3R_27811890_SNP [dm6]	G	C	3.281e^-4	0.885	INTRON CG34353
2R	6612721	2R_6612721_SNP [dm3] 2R_10725216_SNP [dm6]	T	A	3.287e^-4	0.885	UPSTREAM CG12309 INTRON Rab3
3R	8957028	3R_8957028_SNP [dm3] 3R_13131306_SNP [dm6]	T	A	3.288e^-4	0.885	INTRON timeout & 1 other
3L	16037087	3L_16037087_SNP [dm3] 3L_16043987_SNP [dm6]	C	T	3.292e^-4	0.885	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	16037089	3L_16037089_SNP [dm3] 3L_16043989_SNP [dm6]	C	T	3.292e^-4	0.885	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	4031912	3R_4031912_SNP [dm3] 3R_8206190_SNP [dm6]	G	C	3.293e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21827068	2L_21827068_SNP [dm3] 2L_21827068_SNP [dm6]	C	G	3.308e^-4	0.885	INTERGENIC	transposable element FlyBase
3R	8935472	3R_8935472_SNP [dm3] 3R_13109750_SNP [dm6]	C	G	3.319e^-4	0.885	INTRON timeout
2R	16864785	2R_16864785_SNP [dm3] 2R_20977280_SNP [dm6]	A	G	3.327e^-4	0.885	DOWNSTREAM CG15650 & 1 other INTRON CG9344	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	6375371	2R_6375371_SNP [dm3] 2R_10487866_SNP [dm6]	A	T	3.327e^-4	0.885	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21293819	2L_21293819_SNP [dm3] 2L_21293819_SNP [dm6]	C	T	3.336e^-4	0.885	UPSTREAM Gr39a INTRON Mio & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25515681	3R_25515681_SNP [dm3] 3R_29689959_SNP [dm6]	A	C	3.343e^-4	0.885	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Trl
3R	17648950	3R_17648950_SNP [dm3] 3R_21823228_SNP [dm6]	C	A	3.360e^-4	0.885	UPSTREAM CASK & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19577291	3R_19577291_SNP [dm3] 3R_23751569_SNP [dm6]	A	G	3.377e^-4	0.885	SYNONYMOUS_CODING RanBP3 DOWNSTREAM Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16482160	2R_16482160_SNP [dm3] 2R_20594655_SNP [dm6]	G	A	3.378e^-4	0.885	INTRON bl
3L	4171551	3L_4171551_INS [dm3] 3L_4171551_INS [dm6]	A	GCTGGTACT	3.387e^-4	0.885	INTRON Ero1L
3R	10381942	3R_10381942_SNP [dm3] 3R_14556220_SNP [dm6]	A	G	3.390e^-4	0.885	UPSTREAM Pde6 INTRON Pde6
2R	16486068	2R_16486068_SNP [dm3] 2R_20598563_SNP [dm6]	G	A	3.393e^-4	0.885	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12062645	3L_12062645_SNP [dm3] 3L_12069545_SNP [dm6]	C	T	3.393e^-4	0.885	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8723564	2R_8723564_DEL [dm3] 2R_12836059_DEL [dm6]	AAT	A	3.394e^-4	0.885	INTERGENIC
2R	11066760	2R_11066760_SNP [dm3] 2R_15179255_SNP [dm6]	A	T	3.395e^-4	0.885	INTRON igl
3R	8954311	3R_8954311_SNP [dm3] 3R_13128589_SNP [dm6]	C	G	3.401e^-4	0.885	INTRON timeout & 1 other
3L	6717548	3L_6717548_SNP [dm3] 3L_6724448_SNP [dm6]	A	G	3.404e^-4	0.885	DOWNSTREAM CR44523 INTERGENIC	regulatory region REDfly_CRMs
X	18438146	X_18438146_SNP [dm3] X_18544113_SNP [dm6]	T	G	3.410e^-4	0.885	INTRON Bx
3L	1939528	3L_1939528_SNP [dm3] 3L_1939528_SNP [dm6]	A	G	3.422e^-4	0.885	UPSTREAM CG5687 EXON CR44536
2R	8120816	2R_8120816_SNP [dm3] 2R_12233311_SNP [dm6]	G	A	3.423e^-4	0.885	DOWNSTREAM CR44313 INTERGENIC
2R	18905499	2R_18905499_SNP [dm3] 2R_23017976_SNP [dm6]	C	T	3.425e^-4	0.885	INTRON twi & 1 other
3L	4054697	3L_4054697_SNP [dm3] 3L_4054697_SNP [dm6]	G	C	3.426e^-4	0.885	INTRON CG1136
3R	8935473	3R_8935473_SNP [dm3] 3R_13109751_SNP [dm6]	G	A	3.449e^-4	0.885	INTRON timeout
2L	8467172	2L_8467172_SNP [dm3] 2L_8467172_SNP [dm6]	T	G	3.450e^-4	0.885	DOWNSTREAM fu2 INTRON d
2R	9161837	2R_9161837_SNP [dm3] 2R_13274332_SNP [dm6]	A	G	3.452e^-4	0.885	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3R	26495261	3R_26495261_SNP [dm3] 3R_30669539_SNP [dm6]	T	G	3.454e^-4	0.885	INTERGENIC
2L	5332106	2L_5332106_SNP [dm3] 2L_5332106_SNP [dm6]	G	C	3.456e^-4	0.885	SYNONYMOUS_CODING fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4801850	2R_4801850_SNP [dm3] 2R_8914345_SNP [dm6]	T	C	3.458e^-4	0.885	UPSTREAM lin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Stat92E mE1_TFBS_Ubx
X	12163578	X_12163578_SNP [dm3] X_12269545_SNP [dm6]	A	T	3.460e^-4	0.885	INTRON Ten-a
3R	8951658	3R_8951658_SNP [dm3] 3R_13125936_SNP [dm6]	G	A	3.461e^-4	0.885	UTR_3_PRIME 2mit INTRON timeout
3L	3711191	3L_3711191_MNP [dm3] 3L_3711191_MNP [dm6]	GCAA	CTGC	3.469e^-4	0.885	INTERGENIC
3R	22855071	3R_22855071_SNP [dm3] 3R_27029349_SNP [dm6]	T	A	3.475e^-4	0.885	INTRON RYa-R
2R	6379425	2R_6379425_SNP [dm3] 2R_10491920_SNP [dm6]	C	T	3.479e^-4	0.885	UTR_3_PRIME lola INTRON lola
X	16900493	X_16900493_SNP [dm3] X_17006460_SNP [dm6]	C	T	3.486e^-4	0.885	INTRON CG45002
3R	9129358	3R_9129358_SNP [dm3] 3R_13303636_SNP [dm6]	C	T	3.494e^-4	0.885	NON_SYNONYMOUS_CODING CG43208 INTRON CG32473
2R	6719331	2R_6719331_SNP [dm3] 2R_10831826_SNP [dm6]	A	C	3.496e^-4	0.885	INTRON CG12344	TF binding site mE1_TFBS_inv
3R	8959393	3R_8959393_SNP [dm3] 3R_13133671_SNP [dm6]	C	G	3.499e^-4	0.885	INTRON timeout & 2 others
3R	4671788	3R_4671788_SNP [dm3] 3R_8846066_SNP [dm6]	G	A	3.504e^-4	0.885	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	7407340	2L_7407340_SNP [dm3] 2L_7407340_SNP [dm6]	G	T	3.505e^-4	0.885	INTRON CG5177
2R	16865149	2R_16865149_INS [dm3] 2R_20977644_INS [dm6]	C	CATTCCC	3.510e^-4	0.885	UTR_3_PRIME CG15650 DOWNSTREAM CG34115 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23646768	3R_23646768_SNP [dm3] 3R_27821046_SNP [dm6]	T	C	3.517e^-4	0.885	INTRON CG34353
3L	14549731	3L_14549731_SNP [dm3] 3L_14556631_SNP [dm6]	G	A	3.519e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17177730	X_17177730_SNP [dm3] X_17283697_SNP [dm6]	T	A	3.528e^-4	0.885	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
3L	3833617	3L_3833617_SNP [dm3] 3L_3833617_SNP [dm6]	C	G	3.530e^-4	0.885	SYNONYMOUS_CODING enc
2R	17033552	2R_17033552_SNP [dm3] 2R_21146047_SNP [dm6]	G	A	3.539e^-4	0.885	UPSTREAM Hmg-2 DOWNSTREAM Xbp1 INTERGENIC
X	2586523	X_2586523_SNP [dm3] X_2692490_SNP [dm6]	C	T	3.541e^-4	0.885	UTR_3_PRIME per DOWNSTREAM CG2650
3R	21759648	3R_21759648_SNP [dm3] 3R_25933926_SNP [dm6]	A	G	3.556e^-4	0.885	INTRON CCAP-R
3L	11577071	3L_11577071_SNP [dm3] 3L_11583971_SNP [dm6]	G	A	3.560e^-4	0.885	SYNONYMOUS_CODING CG32086 DOWNSTREAM rt
2R	10023090	2R_10023090_DEL [dm3] 2R_14135585_DEL [dm6]	CC	C	3.573e^-4	0.885	INTRON Prosap
2L	8408441	2L_8408441_SNP [dm3] 2L_8408441_SNP [dm6]	C	A	3.574e^-4	0.885	UTR_3_PRIME emb DOWNSTREAM CG13397
X	6530243	X_6530243_SNP [dm3] X_6636210_SNP [dm6]	G	T	3.579e^-4	0.885	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
2R	11735989	2R_11735989_SNP [dm3] 2R_15848484_SNP [dm6]	C	T	3.579e^-4	0.885	UPSTREAM tun INTRON tun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3R	27100474	3R_27100474_SNP [dm3] 3R_31274752_SNP [dm6]	T	C	3.585e^-4	0.885	INTERGENIC
2R	8587393	2R_8587393_SNP [dm3] 2R_12699888_SNP [dm6]	C	T	3.591e^-4	0.885	UPSTREAM wuc INTERGENIC
X	6789048	X_6789048_SNP [dm3] X_6895015_SNP [dm6]	T	A	3.591e^-4	0.885	INTERGENIC
2L	20507042	2L_20507042_SNP [dm3] 2L_20507042_SNP [dm6]	G	A	3.592e^-4	0.885	INTERGENIC
2L	7712868	2L_7712868_SNP [dm3] 2L_7712868_SNP [dm6]	T	A	3.598e^-4	0.885	INTRON Ntl
2R	14062111	2R_14062111_SNP [dm3] 2R_18174606_SNP [dm6]	G	T	3.607e^-4	0.885	UTR_3_PRIME CG10916 DOWNSTREAM CG5726	TF binding site mE1_TFBS_cad
3L	9511699	3L_9511699_SNP [dm3] 3L_9518599_SNP [dm6]	C	G	3.611e^-4	0.885	INTRON CG33700
3R	4418831	3R_4418831_INS [dm3] 3R_8593109_INS [dm6]	G	GG	3.611e^-4	0.885	INTRON 5-HT2B
3L	18649129	3L_18649129_SNP [dm3] 3L_18656029_SNP [dm6]	T	C	3.618e^-4	0.885	INTRON MYPT-75D
2R	6540696	2R_6540696_SNP [dm3] 2R_10653191_SNP [dm6]	A	C	3.626e^-4	0.885	INTERGENIC
2R	11767132	2R_11767132_SNP [dm3] 2R_15879627_SNP [dm6]	G	A	3.626e^-4	0.885	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9178292	3R_9178292_SNP [dm3] 3R_13352570_SNP [dm6]	G	T	3.636e^-4	0.885	INTERGENIC
2L	4638252	2L_4638252_SNP [dm3] 2L_4638252_SNP [dm6]	C	T	3.637e^-4	0.885	INTERGENIC
3R	23646794	3R_23646794_SNP [dm3] 3R_27821072_SNP [dm6]	A	G	3.643e^-4	0.885	INTRON CG34353
2R	16349328	2R_16349328_SNP [dm3] 2R_20461823_SNP [dm6]	G	A	3.646e^-4	0.885	INTRON CG12484
X	16534931	X_16534931_SNP [dm3] X_16640898_SNP [dm6]	G	T	3.661e^-4	0.885	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8335619	2R_8335619_SNP [dm3] 2R_12448114_SNP [dm6]	A	T	3.662e^-4	0.885	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18748258	X_18748258_SNP [dm3] X_18854225_SNP [dm6]	A	T	3.668e^-4	0.885	SYNONYMOUS_CODING CG34422	TF binding site mE1_TFBS_chinmo
3L	9153075	3L_9153075_SNP [dm3] 3L_9159975_SNP [dm6]	A	G	3.668e^-4	0.885	INTRON Rdl	TF binding site mE1_TFBS_sens
3L	13148603	3L_13148603_SNP [dm3] 3L_13155503_SNP [dm6]	G	T	3.679e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10901161	3R_10901161_DEL [dm3] 3R_15075439_DEL [dm6]	TCA	C	3.681e^-4	0.885	INTRON dpr9
2L	15124464	2L_15124464_SNP [dm3] 2L_15124464_SNP [dm6]	T	A	3.691e^-4	0.885	INTERGENIC
X	19228802	X_19228802_SNP [dm3] X_19334769_SNP [dm6]	A	T	3.702e^-4	0.885	INTRON nAChRalpha7
3L	14676708	3L_14676708_SNP [dm3] 3L_14683608_SNP [dm6]	C	A	3.703e^-4	0.885	INTRON ome
X	11234065	X_11234065_SNP [dm3] X_11340032_SNP [dm6]	C	T	3.707e^-4	0.885	UTR_5_PRIME Kap3 & 1 other UPSTREAM Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11735691	2R_11735691_SNP [dm3] 2R_15848186_SNP [dm6]	T	G	3.714e^-4	0.885	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
2R	6740078	2R_6740078_SNP [dm3] 2R_10852573_SNP [dm6]	A	G	3.718e^-4	0.885	UPSTREAM CR45136 INTRON CG30015
2L	5714078	2L_5714078_SNP [dm3] 2L_5714078_SNP [dm6]	T	C	3.724e^-4	0.885	DOWNSTREAM CG7236 INTERGENIC
2R	2901358	2R_2901358_SNP [dm3] 2R_7013853_SNP [dm6]	T	A	3.730e^-4	0.885	INTRON Tsp42Ee	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	21079670	2R_21079670_INS [dm3] 2R_25192147_INS [dm6]	A	AGCTTGA	3.734e^-4	0.885	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21945351	3R_21945351_SNP [dm3] 3R_26119629_SNP [dm6]	T	G	3.736e^-4	0.885	INTRON CG31324
3R	10226008	3R_10226008_SNP [dm3] 3R_14400286_SNP [dm6]	A	G	3.736e^-4	0.885	INTRON cv-c	TF binding site mE1_TFBS_Trl
X	13503117	X_13503117_SNP [dm3] X_13609084_SNP [dm6]	C	T	3.740e^-4	0.885	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
2R	5261900	2R_5261900_SNP [dm3] 2R_9374395_SNP [dm6]	G	A	3.741e^-4	0.885	UTR_5_PRIME CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14477774	3L_14477774_SNP [dm3] 3L_14484674_SNP [dm6]	A	T	3.745e^-4	0.885	INTRON bbg
3L	15729552	3L_15729552_SNP [dm3] 3L_15736452_SNP [dm6]	A	G	3.746e^-4	0.885	INTERGENIC
2L	520004	2L_520004_SNP [dm3] 2L_520004_SNP [dm6]	T	C	3.752e^-4	0.885	INTRON ush	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8731736	2R_8731736_SNP [dm3] 2R_12844231_SNP [dm6]	G	C	3.758e^-4	0.885	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8772489	3L_8772489_SNP [dm3] 3L_8779389_SNP [dm6]	C	T	3.761e^-4	0.885	INTRON Fhos	TF binding site mE1_TFBS_cad
X	19118631	X_19118631_INS [dm3] X_19224598_INS [dm6]	G	GT	3.764e^-4	0.885	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9030122	3L_9030122_SNP [dm3] 3L_9037022_SNP [dm6]	T	A	3.772e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	4031911	3R_4031911_INS [dm3] 3R_8206189_INS [dm6]	G	GCATGT	3.772e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9535281	3L_9535281_SNP [dm3] 3L_9542181_SNP [dm6]	A	T	3.774e^-4	0.885	DOWNSTREAM Ir67a INTERGENIC
2R	18386679	2R_18386679_SNP [dm3] 2R_22499174_SNP [dm6]	A	G	3.774e^-4	0.885	SYNONYMOUS_CODING px	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	13473987	X_13473987_SNP [dm3] X_13579954_SNP [dm6]	T	C	3.782e^-4	0.885	INTRON Tango13
3R	23637552	3R_23637552_DEL [dm3] 3R_27811830_DEL [dm6]	TCTTAT	CA	3.787e^-4	0.885	INTRON CG34353
2R	9161900	2R_9161900_SNP [dm3] 2R_13274395_SNP [dm6]	G	T	3.790e^-4	0.885	INTRON Dh31-R
2R	20199385	2R_20199385_SNP [dm3] 2R_24311862_SNP [dm6]	C	T	3.794e^-4	0.885	SYNONYMOUS_CODING betaTub60D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15567949	3R_15567949_SNP [dm3] 3R_19742227_SNP [dm6]	A	C	3.797e^-4	0.885	INTRON GluClalpha
X	21089659	X_21089659_SNP [dm3] X_21218632_SNP [dm6]	C	T	3.803e^-4	0.885	NON_SYNONYMOUS_CODING CG32523 INTRON CG32521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4038642	X_4038642_SNP [dm3] X_4144609_SNP [dm6]	G	A	3.811e^-4	0.885	INTRON Fas2
3R	8950654	3R_8950654_SNP [dm3] 3R_13124932_SNP [dm6]	T	C	3.814e^-4	0.885	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3L	14068610	3L_14068610_SNP [dm3] 3L_14075510_SNP [dm6]	A	C	3.816e^-4	0.885	UPSTREAM btl INTRON Pex1	TF binding site BDTNP1_TFBS_dl
3L	9400776	3L_9400776_SNP [dm3] 3L_9407676_SNP [dm6]	G	T	3.818e^-4	0.885	UTR_3_PRIME CG4022 DOWNSTREAM CG4022
2R	7395539	2R_7395539_SNP [dm3] 2R_11508034_SNP [dm6]	A	T	3.828e^-4	0.885	UTR_3_PRIME inv DOWNSTREAM inv
3R	8935498	3R_8935498_DEL [dm3] 3R_13109776_DEL [dm6]	AA	A	3.833e^-4	0.885	INTRON timeout
3L	14533913	3L_14533913_SNP [dm3] 3L_14540813_SNP [dm6]	C	T	3.834e^-4	0.885	DOWNSTREAM CG9238 & 1 other INTERGENIC
2R	6792712	2R_6792712_SNP [dm3] 2R_10905207_SNP [dm6]	A	T	3.842e^-4	0.885	INTRON CG12943
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	3.846e^-4	0.885	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
2L	1345652	2L_1345652_DEL [dm3] 2L_1345652_DEL [dm6]	TCGG	C	3.852e^-4	0.885	DOWNSTREAM CR45006 & 1 other EXON CR45005
2R	10825433	2R_10825433_SNP [dm3] 2R_14937928_SNP [dm6]	G	A	3.853e^-4	0.885	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16468926	2R_16468926_SNP [dm3] 2R_20581421_SNP [dm6]	A	T	3.859e^-4	0.885	INTRON qsm
3L	14477775	3L_14477775_SNP [dm3] 3L_14484675_SNP [dm6]	C	T	3.862e^-4	0.885	INTRON bbg
X	13164556	X_13164556_SNP [dm3] X_13270523_SNP [dm6]	T	C	3.863e^-4	0.885	SYNONYMOUS_CODING HDAC4
3R	8935454	3R_8935454_SNP [dm3] 3R_13109732_SNP [dm6]	A	T	3.863e^-4	0.885	INTRON timeout
X	19442643	X_19442643_SNP [dm3] X_19548610_SNP [dm6]	A	G	3.863e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9547032	3L_9547032_SNP [dm3] 3L_9553932_SNP [dm6]	A	G	3.864e^-4	0.885	INTRON CG42673
2L	15124469	2L_15124469_SNP [dm3] 2L_15124469_SNP [dm6]	T	C	3.866e^-4	0.885	INTERGENIC
3L	14676704	3L_14676704_DEL [dm3] 3L_14683604_DEL [dm6]	GAT	G	3.873e^-4	0.885	INTRON ome
2R	10504988	2R_10504988_SNP [dm3] 2R_14617483_SNP [dm6]	T	C	3.874e^-4	0.885	SYNONYMOUS_CODING Su_var_2-HP2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	7754207	3R_7754207_SNP [dm3] 3R_11928485_SNP [dm6]	A	G	3.875e^-4	0.885	INTRON Cad87A
2L	10382469	2L_10382469_SNP [dm3] 2L_10382469_SNP [dm6]	T	A	3.876e^-4	0.885	UTR_3_PRIME gny DOWNSTREAM gny INTRON CG5096	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	19281256	2R_19281256_SNP [dm3] 2R_23393733_SNP [dm6]	A	G	3.880e^-4	0.885	INTRON CG3530	TF binding site mE1_TFBS_chinmo
3R	22951521	3R_22951521_SNP [dm3] 3R_27125799_SNP [dm6]	A	G	3.881e^-4	0.885	SYNONYMOUS_CODING CG6051	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	21003936	2R_21003936_SNP [dm3] 2R_25116413_SNP [dm6]	A	G	3.887e^-4	0.885	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15927408	2R_15927408_SNP [dm3] 2R_20039903_SNP [dm6]	G	C	3.889e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	11032296	2L_11032296_SNP [dm3] 2L_11032296_SNP [dm6]	A	G	3.891e^-4	0.885	INTRON Samuel
3R	25632062	3R_25632062_SNP [dm3] 3R_29806340_SNP [dm6]	A	C	3.896e^-4	0.885	SYNONYMOUS_CODING ncd UPSTREAM ca	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1362701	3L_1362701_SNP [dm3] 3L_1362701_SNP [dm6]	T	A	3.902e^-4	0.885	INTRON Ptp61F
3R	25620396	3R_25620396_SNP [dm3] 3R_29794674_SNP [dm6]	C	G	3.904e^-4	0.885	SYNONYMOUS_CODING sro DOWNSTREAM kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8960116	3R_8960116_SNP [dm3] 3R_13134394_SNP [dm6]	C	A	3.909e^-4	0.885	INTRON timeout & 2 others
2R	13589140	2R_13589140_SNP [dm3] 2R_17701635_SNP [dm6]	T	C	3.912e^-4	0.885	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
2R	6797928	2R_6797928_SNP [dm3] 2R_10910423_SNP [dm6]	T	A	3.918e^-4	0.885	NON_SYNONYMOUS_CODING Obp47a
2R	10817977	2R_10817977_SNP [dm3] 2R_14930472_SNP [dm6]	G	T	3.926e^-4	0.885	SYNONYMOUS_CODING CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14720660	3R_14720660_SNP [dm3] 3R_18894938_SNP [dm6]	A	C	3.936e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6740115	2R_6740115_SNP [dm3] 2R_10852610_SNP [dm6]	T	G	3.944e^-4	0.885	UPSTREAM CR45136 INTRON CG30015
2R	8335617	2R_8335617_SNP [dm3] 2R_12448112_SNP [dm6]	A	T	3.947e^-4	0.885	INTRON Dyb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2430528	X_2430528_SNP [dm3] X_2536495_SNP [dm6]	A	G	3.948e^-4	0.885	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3780789	3L_3780789_INS [dm3] 3L_3780789_INS [dm6]	G	GCTGCTG	3.949e^-4	0.885	CODON_INSERTION CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3858582	3R_3858582_SNP [dm3] 3R_8032860_SNP [dm6]	A	G	3.950e^-4	0.885	SYNONYMOUS_CODING CG11035 UPSTREAM unc-45 DOWNSTREAM CG10903	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5714108	2L_5714108_SNP [dm3] 2L_5714108_SNP [dm6]	A	T	3.952e^-4	0.885	DOWNSTREAM CG7236 INTERGENIC
2R	6797934	2R_6797934_SNP [dm3] 2R_10910429_SNP [dm6]	A	T	3.956e^-4	0.885	NON_SYNONYMOUS_CODING Obp47a
2R	16465350	2R_16465350_SNP [dm3] 2R_20577845_SNP [dm6]	T	G	3.958e^-4	0.885	INTRON qsm
X	6195047	X_6195047_SNP [dm3] X_6301014_SNP [dm6]	T	G	3.981e^-4	0.885	INTRON CG12219	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15953106	3L_15953106_SNP [dm3] 3L_15960006_SNP [dm6]	G	T	3.982e^-4	0.885	NON_SYNONYMOUS_CODING CG17032 DOWNSTREAM l_3_72Ab
2L	9212246	2L_9212246_SNP [dm3] 2L_9212246_SNP [dm6]	A	T	3.992e^-4	0.885	INTRON tai
3L	4110611	3L_4110611_SNP [dm3] 3L_4110611_SNP [dm6]	C	T	3.994e^-4	0.885	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7711967	3L_7711967_SNP [dm3] 3L_7718867_SNP [dm6]	A	T	3.997e^-4	0.885	UPSTREAM CG12262 & 1 other INTRON CG32373
3R	9034456	3R_9034456_SNP [dm3] 3R_13208734_SNP [dm6]	G	A	3.997e^-4	0.885	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	2711960	2L_2711960_SNP [dm3] 2L_2711960_SNP [dm6]	G	A	4.019e^-4	0.885	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20987209	2R_20987209_SNP [dm3] 2R_25099686_SNP [dm6]	C	T	4.019e^-4	0.885	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17806860	X_17806860_SNP [dm3] X_17912827_SNP [dm6]	C	A	4.023e^-4	0.885	INTRON CG6847	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6335486	3R_6335486_SNP [dm3] 3R_10509764_SNP [dm6]	A	C	4.025e^-4	0.885	UTR_3_PRIME hth DOWNSTREAM hth	TF binding site mE1_TFBS_zfh1
2L	2711935	2L_2711935_SNP [dm3] 2L_2711935_SNP [dm6]	A	T	4.028e^-4	0.885	INTRON CG31690	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9547598	3L_9547598_SNP [dm3] 3L_9554498_SNP [dm6]	G	T	4.031e^-4	0.885	INTRON CG42673
3L	10569469	3L_10569469_SNP [dm3] 3L_10576369_SNP [dm6]	C	A	4.035e^-4	0.885	INTRON A2bp1
3R	23637550	3R_23637550_SNP [dm3] 3R_27811828_SNP [dm6]	G	A	4.042e^-4	0.885	INTRON CG34353
3L	4170905	3L_4170905_SNP [dm3] 3L_4170905_SNP [dm6]	G	T	4.042e^-4	0.885	INTRON Ero1L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	16883909	3L_16883909_SNP [dm3] 3L_16890809_SNP [dm6]	C	T	4.043e^-4	0.885	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20985571	2R_20985571_DEL [dm3] 2R_25098048_DEL [dm6]	TAGAA	C	4.047e^-4	0.885	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	22086624	3L_22086624_SNP [dm3] 3L_22093524_SNP [dm6]	T	C	4.055e^-4	0.885	INTERGENIC
2R	10026039	2R_10026039_SNP [dm3] 2R_14138534_SNP [dm6]	G	T	4.058e^-4	0.885	INTRON Prosap
2L	6745659	2L_6745659_SNP [dm3] 2L_6745659_SNP [dm6]	C	G	4.067e^-4	0.885	UPSTREAM CG31910 DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221
X	19118691	X_19118691_SNP [dm3] X_19224658_SNP [dm6]	G	A	4.069e^-4	0.885	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4633268	2L_4633268_SNP [dm3] 2L_4633268_SNP [dm6]	T	C	4.072e^-4	0.885	DOWNSTREAM CR45452 INTERGENIC	TF binding site mE1_TFBS_inv
X	19868598	X_19868598_SNP [dm3] X_19974565_SNP [dm6]	A	T	4.077e^-4	0.885	INTERGENIC
3L	3711170	3L_3711170_SNP [dm3] 3L_3711170_SNP [dm6]	G	C	4.088e^-4	0.885	INTERGENIC
X	4857164	X_4857164_DEL [dm3] X_4963131_DEL [dm6]	CAGATTTCCAAGC...	C	4.091e^-4	0.885	INTRON CR44833
3L	12338737	3L_12338737_SNP [dm3] 3L_12345637_SNP [dm6]	G	T	4.092e^-4	0.885	INTRON CrzR
2L	15124442	2L_15124442_SNP [dm3] 2L_15124442_SNP [dm6]	G	T	4.094e^-4	0.885	INTERGENIC
X	13274420	X_13274420_SNP [dm3] X_13380387_SNP [dm6]	G	A	4.094e^-4	0.885	UTR_3_PRIME Rbp1-like DOWNSTREAM Rbp1-like & 1 other
X	12241664	X_12241664_SNP [dm3] X_12347631_SNP [dm6]	A	G	4.097e^-4	0.885	INTERGENIC
3L	17410830	3L_17410830_SNP [dm3] 3L_17417730_SNP [dm6]	T	C	4.099e^-4	0.885	INTRON blot	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3L	17320094	3L_17320094_SNP [dm3] 3L_17326994_SNP [dm6]	C	T	4.102e^-4	0.885	DOWNSTREAM Or74a INTERGENIC
2L	15124493	2L_15124493_SNP [dm3] 2L_15124493_SNP [dm6]	A	G	4.103e^-4	0.885	INTERGENIC
X	16848393	X_16848393_SNP [dm3] X_16954360_SNP [dm6]	C	G	4.107e^-4	0.885	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22223570	3L_22223570_SNP [dm3] 3L_22230470_SNP [dm6]	A	C	4.136e^-4	0.885	INTRON olf413
2R	5103949	2R_5103949_SNP [dm3] 2R_9216444_SNP [dm6]	A	T	4.138e^-4	0.885	INTERGENIC
2R	15193023	2R_15193023_SNP [dm3] 2R_19305518_SNP [dm6]	T	G	4.143e^-4	0.885	NON_SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
2R	15193376	2R_15193376_SNP [dm3] 2R_19305871_SNP [dm6]	T	A	4.157e^-4	0.885	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9192417	X_9192417_SNP [dm3] X_9298384_SNP [dm6]	G	A	4.162e^-4	0.885	INTRON lz
3R	19619386	3R_19619386_SNP [dm3] 3R_23793664_SNP [dm6]	T	C	4.165e^-4	0.885	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9212207	2L_9212207_SNP [dm3] 2L_9212207_SNP [dm6]	G	A	4.174e^-4	0.885	INTRON tai
3R	8964946	3R_8964946_SNP [dm3] 3R_13139224_SNP [dm6]	A	T	4.179e^-4	0.885	INTRON timeout & 2 others
2R	20994349	2R_20994349_SNP [dm3] 2R_25106826_SNP [dm6]	C	T	4.180e^-4	0.885	INTRON lov
3L	9611072	3L_9611072_SNP [dm3] 3L_9617972_SNP [dm6]	A	T	4.181e^-4	0.885	SPLICE_SITE_REGION LanB2 INTRON LanB2
3L	14434470	3L_14434470_DEL [dm3] 3L_14441370_DEL [dm6]	TC	T	4.182e^-4	0.885	INTRON bbg
2L	13433785	2L_13433785_SNP [dm3] 2L_13433785_SNP [dm6]	A	T	4.185e^-4	0.885	INTRON CG42784
3R	9034473	3R_9034473_SNP [dm3] 3R_13208751_SNP [dm6]	A	T	4.185e^-4	0.885	DOWNSTREAM CG8483 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7217024	3L_7217024_SNP [dm3] 3L_7223924_SNP [dm6]	T	G	4.186e^-4	0.885	DOWNSTREAM CR45410 INTERGENIC
3R	9210547	3R_9210547_INS [dm3] 3R_13384825_INS [dm6]	A	AA	4.192e^-4	0.885	UTR_3_PRIME Droj2 DOWNSTREAM CG9799
3L	7382772	3L_7382772_SNP [dm3] 3L_7389672_SNP [dm6]	G	A	4.207e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10028999	2R_10028999_SNP [dm3] 2R_14141494_SNP [dm6]	A	G	4.212e^-4	0.885	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25725054	3R_25725054_SNP [dm3] 3R_29899332_SNP [dm6]	T	C	4.212e^-4	0.885	DOWNSTREAM CG31038 INTRON CG31038
X	19011897	X_19011897_INS [dm3] X_19117864_INS [dm6]	G	GG	4.213e^-4	0.885	INTERGENIC
3L	1003101	3L_1003101_DEL [dm3] 3L_1003101_DEL [dm6]	ATGCTCTCCGTTCATTACAG...	A	4.215e^-4	0.885	INTRON trio
2R	8122462	2R_8122462_SNP [dm3] 2R_12234957_SNP [dm6]	T	G	4.218e^-4	0.885	UPSTREAM CR44313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	4042803	2L_4042803_SNP [dm3] 2L_4042803_SNP [dm6]	C	T	4.220e^-4	0.885	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17013144	2R_17013144_SNP [dm3] 2R_21125639_SNP [dm6]	T	A	4.221e^-4	0.885	SYNONYMOUS_CODING CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7341264	2L_7341264_SNP [dm3] 2L_7341264_SNP [dm6]	G	T	4.222e^-4	0.885	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2R	4516407	2R_4516407_SNP [dm3] 2R_8628902_SNP [dm6]	C	T	4.229e^-4	0.885	SYNONYMOUS_CODING CG14749	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23646746	3R_23646746_SNP [dm3] 3R_27821024_SNP [dm6]	A	T	4.234e^-4	0.885	INTRON CG34353
3R	18302124	3R_18302124_SNP [dm3] 3R_22476402_SNP [dm6]	C	A	4.235e^-4	0.885	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10657466	2R_10657466_SNP [dm3] 2R_14769961_SNP [dm6]	G	A	4.236e^-4	0.885	SYNONYMOUS_CODING CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	10374834	2R_10374834_SNP [dm3] 2R_14487329_SNP [dm6]	G	A	4.254e^-4	0.885	INTRON L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	9629276	3L_9629276_SNP [dm3] 3L_9636176_SNP [dm6]	G	A	4.262e^-4	0.885	SYNONYMOUS_CODING fry
3R	17654099	3R_17654099_SNP [dm3] 3R_21828377_SNP [dm6]	T	G	4.276e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	6390106	2R_6390106_DEL [dm3] 2R_10502601_DEL [dm6]	GTG	G	4.278e^-4	0.885	INTRON lola
3L	11269397	3L_11269397_SNP [dm3] 3L_11276297_SNP [dm6]	G	A	4.287e^-4	0.885	INTERGENIC
3L	4084080	3L_4084080_SNP [dm3] 3L_4084080_SNP [dm6]	G	C	4.289e^-4	0.885	INTRON Gad1
X	2092611	X_2092611_SNP [dm3] X_2198578_SNP [dm6]	C	A	4.290e^-4	0.885	INTRON Mct1	TF binding site mE1_TFBS_chinmo
2R	6244135	2R_6244135_SNP [dm3] 2R_10356630_SNP [dm6]	C	T	4.293e^-4	0.885	SYNONYMOUS_CODING CG42733 UPSTREAM CG12902 & 1 other INTRON CG42732
2R	20052501	2R_20052501_SNP [dm3] 2R_24164978_SNP [dm6]	G	A	4.293e^-4	0.885	INTRON CG3328	TF binding site mE1_TFBS_chinmo
2R	21006183	2R_21006183_SNP [dm3] 2R_25118660_SNP [dm6]	A	G	4.301e^-4	0.885	INTRON lov
2R	17870629	2R_17870629_SNP [dm3] 2R_21983124_SNP [dm6]	A	G	4.307e^-4	0.885	INTERGENIC
3R	23637584	3R_23637584_SNP [dm3] 3R_27811862_SNP [dm6]	C	A	4.309e^-4	0.885	INTRON CG34353
3L	18033282	3L_18033282_SNP [dm3] 3L_18040182_SNP [dm6]	G	A	4.311e^-4	0.885	UPSTREAM CG32192 INTRON Eip75B
2R	5281542	2R_5281542_SNP [dm3] 2R_9394037_SNP [dm6]	G	A	4.313e^-4	0.885	NON_SYNONYMOUS_CODING l_2_03659	TF binding site mE1_TFBS_cad
2L	13433639	2L_13433639_SNP [dm3] 2L_13433639_SNP [dm6]	A	G	4.316e^-4	0.885	INTRON CG42784
2R	6608212	2R_6608212_SNP [dm3] 2R_10720707_SNP [dm6]	T	C	4.319e^-4	0.885	UTR_3_PRIME stan DOWNSTREAM Rab3
3R	9879090	3R_9879090_SNP [dm3] 3R_14053368_SNP [dm6]	C	T	4.329e^-4	0.885	INTERGENIC
3R	23403198	3R_23403198_SNP [dm3] 3R_27577476_SNP [dm6]	C	A	4.332e^-4	0.885	INTRON wdb
3R	20099919	3R_20099919_SNP [dm3] 3R_24274197_SNP [dm6]	T	C	4.343e^-4	0.885	SYNONYMOUS_CODING Orct2	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23208690	3R_23208690_SNP [dm3] 3R_27382968_SNP [dm6]	G	C	4.349e^-4	0.885	INTRON side
2L	11032203	2L_11032203_SNP [dm3] 2L_11032203_SNP [dm6]	C	T	4.350e^-4	0.885	INTRON Samuel
X	6542934	X_6542934_SNP [dm3] X_6648901_SNP [dm6]	C	T	4.354e^-4	0.885	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
X	19445486	X_19445486_SNP [dm3] X_19551453_SNP [dm6]	G	A	4.369e^-4	0.885	UPSTREAM mir-973 & 1 other DOWNSTREAM mir-972 INTERGENIC
3L	9610871	3L_9610871_SNP [dm3] 3L_9617771_SNP [dm6]	T	C	4.369e^-4	0.885	SPLICE_SITE_REGION LanB2 INTRON LanB2
X	4082670	X_4082670_SNP [dm3] X_4188637_SNP [dm6]	G	A	4.378e^-4	0.885	INTRON Fas2
3R	10515669	3R_10515669_SNP [dm3] 3R_14689947_SNP [dm6]	G	C	4.387e^-4	0.885	INTRON Meltrin
3L	4112250	3L_4112250_SNP [dm3] 3L_4112250_SNP [dm6]	C	G	4.396e^-4	0.885	NON_SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18923821	X_18923821_SNP [dm3] X_19029788_SNP [dm6]	C	T	4.396e^-4	0.885	INTERGENIC
2L	892508	2L_892508_SNP [dm3] 2L_892508_SNP [dm6]	T	C	4.408e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12747618	X_12747618_SNP [dm3] X_12853585_SNP [dm6]	C	A	4.409e^-4	0.885	INTRON Pde9
2L	21293825	2L_21293825_SNP [dm3] 2L_21293825_SNP [dm6]	T	A	4.412e^-4	0.885	UPSTREAM Gr39a INTRON Mio & 1 other	TF binding site BDTNP1_TFBS_dl
3R	8923577	3R_8923577_SNP [dm3] 3R_13097855_SNP [dm6]	T	C	4.421e^-4	0.885	INTRON timeout
2R	20358466	2R_20358466_INS [dm3] 2R_24470943_INS [dm6]	T	ATAATTATATC...	4.424e^-4	0.885	INTRON CG13579
3R	19847815	3R_19847815_SNP [dm3] 3R_24022093_SNP [dm6]	A	T	4.426e^-4	0.885	INTRON KrT95D
3L	9969143	3L_9969143_SNP [dm3] 3L_9976043_SNP [dm6]	T	G	4.431e^-4	0.885	INTRON dpr6
2R	20987277	2R_20987277_SNP [dm3] 2R_25099754_SNP [dm6]	C	A	4.434e^-4	0.885	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20988966	2R_20988966_SNP [dm3] 2R_25101443_SNP [dm6]	G	T	4.434e^-4	0.885	INTRON lov	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20992185	2R_20992185_DEL [dm3] 2R_25104662_DEL [dm6]	AAA	A	4.434e^-4	0.885	INTRON lov
2R	20996021	2R_20996021_SNP [dm3] 2R_25108498_SNP [dm6]	C	G	4.434e^-4	0.885	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	20999198	2R_20999198_SNP [dm3] 2R_25111675_SNP [dm6]	T	C	4.434e^-4	0.885	INTRON lov	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	21004054	2R_21004054_SNP [dm3] 2R_25116531_SNP [dm6]	C	A	4.434e^-4	0.885	INTRON lov	TF binding site BDTNP1_TFBS_z
2R	21005791	2R_21005791_SNP [dm3] 2R_25118268_SNP [dm6]	A	T	4.434e^-4	0.885	INTRON lov
2R	21005793	2R_21005793_SNP [dm3] 2R_25118270_SNP [dm6]	A	T	4.434e^-4	0.885	INTRON lov
2R	21006203	2R_21006203_SNP [dm3] 2R_25118680_SNP [dm6]	A	C	4.434e^-4	0.885	INTRON lov
2R	21008933	2R_21008933_SNP [dm3] 2R_25121410_SNP [dm6]	A	T	4.434e^-4	0.885	INTRON lov	TF binding site mE1_TFBS_cad
3L	1359354	3L_1359354_SNP [dm3] 3L_1359354_SNP [dm6]	C	A	4.443e^-4	0.885	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20045871	2R_20045871_SNP [dm3] 2R_24158348_SNP [dm6]	A	T	4.445e^-4	0.885	UTR_5_PRIME CG42568 UTR_3_PRIME DnaJ-60 DOWNSTREAM Dat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	22114434	3L_22114434_SNP [dm3] 3L_22121334_SNP [dm6]	C	A	4.451e^-4	0.885	UPSTREAM CR45236 INTERGENIC
X	5613330	X_5613330_SNP [dm3] X_5719297_SNP [dm6]	T	A	4.452e^-4	0.885	DOWNSTREAM CG32758 INTERGENIC
2R	20045017	2R_20045017_SNP [dm3] 2R_24157494_SNP [dm6]	A	C	4.460e^-4	0.885	SYNONYMOUS_CODING Dat DOWNSTREAM DnaJ-60 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14463719	2L_14463719_SNP [dm3] 2L_14463719_SNP [dm6]	C	A	4.460e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	5339869	2R_5339869_SNP [dm3] 2R_9452364_SNP [dm6]	G	A	4.467e^-4	0.885	INTRON Camta
2R	16864620	2R_16864620_SNP [dm3] 2R_20977115_SNP [dm6]	G	T	4.469e^-4	0.885	UTR_5_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	22945176	3R_22945176_SNP [dm3] 3R_27119454_SNP [dm6]	A	C	4.470e^-4	0.885	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG5880	TF binding site mE1_TFBS_cad
X	12157673	X_12157673_SNP [dm3] X_12263640_SNP [dm6]	A	C	4.470e^-4	0.885	INTRON Ten-a
3L	17008891	3L_17008891_SNP [dm3] 3L_17015791_SNP [dm6]	C	G	4.476e^-4	0.885	UTR_5_PRIME CG6664 UPSTREAM CG7728	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7406963	2L_7406963_SNP [dm3] 2L_7406963_SNP [dm6]	T	C	4.477e^-4	0.885	INTRON CG5177
2R	20994090	2R_20994090_SNP [dm3] 2R_25106567_SNP [dm6]	T	C	4.496e^-4	0.885	INTRON lov
2L	15997437	2L_15997437_SNP [dm3] 2L_15997437_SNP [dm6]	A	G	4.499e^-4	0.885	INTERGENIC
3L	14536347	3L_14536347_SNP [dm3] 3L_14543247_SNP [dm6]	C	A	4.507e^-4	0.885	INTRON CG9238
X	6542895	X_6542895_SNP [dm3] X_6648862_SNP [dm6]	G	A	4.507e^-4	0.885	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
2L	7100322	2L_7100322_SNP [dm3] 2L_7100322_SNP [dm6]	G	A	4.511e^-4	0.885	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4171819	3L_4171819_DEL [dm3] 3L_4171819_DEL [dm6]	TAAACAAAAATT...	T	4.523e^-4	0.885	INTRON Ero1L
2L	9212250	2L_9212250_SNP [dm3] 2L_9212250_SNP [dm6]	G	A	4.528e^-4	0.885	INTRON tai
2L	18663636	2L_18663636_SNP [dm3] 2L_18663636_SNP [dm6]	C	T	4.529e^-4	0.885	INTERGENIC
2R	9680133	2R_9680133_SNP [dm3] 2R_13792628_SNP [dm6]	C	G	4.530e^-4	0.885	DOWNSTREAM CR43811 INTERGENIC
2R	12788362	2R_12788362_SNP [dm3] 2R_16900857_SNP [dm6]	T	C	4.533e^-4	0.885	SYNONYMOUS_CODING inaC
3R	8865873	3R_8865873_SNP [dm3] 3R_13040151_SNP [dm6]	A	G	4.540e^-4	0.885	UTR_3_PRIME CG11668 DOWNSTREAM snk
2R	17099937	2R_17099937_SNP [dm3] 2R_21212432_SNP [dm6]	C	T	4.541e^-4	0.885	SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
3L	1002483	3L_1002483_SNP [dm3] 3L_1002483_SNP [dm6]	G	A	4.546e^-4	0.885	INTRON trio
3R	9132613	3R_9132613_SNP [dm3] 3R_13306891_SNP [dm6]	C	A	4.549e^-4	0.885	INTRON CG32473
2R	4657257	2R_4657257_SNP [dm3] 2R_8769752_SNP [dm6]	T	C	4.550e^-4	0.885	UPSTREAM CR44278 INTERGENIC
2L	14322209	2L_14322209_SNP [dm3] 2L_14322209_SNP [dm6]	T	C	4.553e^-4	0.885	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	9168252	2L_9168252_SNP [dm3] 2L_9168252_SNP [dm6]	G	C	4.562e^-4	0.885	INTRON tai	TF binding site BDTNP1_TFBS_dl
2R	16468720	2R_16468720_SNP [dm3] 2R_20581215_SNP [dm6]	A	G	4.564e^-4	0.885	INTRON qsm
2L	1157083	2L_1157083_SNP [dm3] 2L_1157083_SNP [dm6]	T	C	4.566e^-4	0.885	UPSTREAM capt INTRON capt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15193385	2R_15193385_SNP [dm3] 2R_19305880_SNP [dm6]	A	G	4.574e^-4	0.885	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17162369	X_17162369_SNP [dm3] X_17268336_SNP [dm6]	A	G	4.582e^-4	0.885	UTR_5_PRIME f INTRON f
2R	6370225	2R_6370225_SNP [dm3] 2R_10482720_SNP [dm6]	C	T	4.584e^-4	0.885	UTR_3_PRIME lola & 1 other DOWNSTREAM CG17765	TF binding site BDTNP1_TFBS_dl
X	4423327	X_4423327_SNP [dm3] X_4529294_SNP [dm6]	A	T	4.586e^-4	0.885	UPSTREAM CG3556 INTRON CR32773
2L	2463169	2L_2463169_SNP [dm3] 2L_2463169_SNP [dm6]	T	C	4.592e^-4	0.885	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
X	13883742	X_13883742_SNP [dm3] X_13989709_SNP [dm6]	G	T	4.610e^-4	0.887	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl
2L	15652102	2L_15652102_SNP [dm3] 2L_15652102_SNP [dm6]	A	G	4.616e^-4	0.887	SPLICE_SITE_REGION CG4587 INTRON CG4587
2R	10921696	2R_10921696_SNP [dm3] 2R_15034191_SNP [dm6]	C	T	4.619e^-4	0.887	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12876152	X_12876152_SNP [dm3] X_12982119_SNP [dm6]	T	G	4.619e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	13153855	3L_13153855_SNP [dm3] 3L_13160755_SNP [dm6]	A	G	4.638e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13148642	3L_13148642_SNP [dm3] 3L_13155542_SNP [dm6]	C	T	4.644e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6633104	2R_6633104_SNP [dm3] 2R_10745599_SNP [dm6]	G	A	4.646e^-4	0.888	INTRON CG33144
2R	12784060	2R_12784060_SNP [dm3] 2R_16896555_SNP [dm6]	A	G	4.649e^-4	0.888	UPSTREAM CG8910 INTERGENIC
2L	6301861	2L_6301861_SNP [dm3] 2L_6301861_SNP [dm6]	C	T	4.661e^-4	0.888	INTRON Ddr
3R	8944471	3R_8944471_SNP [dm3] 3R_13118749_SNP [dm6]	A	G	4.663e^-4	0.888	INTRON timeout
X	9597053	X_9597053_SNP [dm3] X_9703020_SNP [dm6]	G	A	4.666e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3454320	3L_3454320_SNP [dm3] 3L_3454320_SNP [dm6]	A	T	4.666e^-4	0.888	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16765876	3L_16765876_SNP [dm3] 3L_16772776_SNP [dm6]	G	T	4.675e^-4	0.888	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
3L	6313004	3L_6313004_SNP [dm3] 3L_6319904_SNP [dm6]	T	A	4.677e^-4	0.888	UPSTREAM Or65a INTERGENIC	regulatory region REDfly_CRMs
2R	6389852	2R_6389852_SNP [dm3] 2R_10502347_SNP [dm6]	G	C	4.681e^-4	0.888	INTRON lola
3L	1010834	3L_1010834_SNP [dm3] 3L_1010834_SNP [dm6]	C	G	4.689e^-4	0.888	INTRON trio
3R	8911891	3R_8911891_SNP [dm3] 3R_13086169_SNP [dm6]	T	A	4.691e^-4	0.888	UPSTREAM CG43063 DOWNSTREAM CR44967 INTERGENIC
3L	11357277	3L_11357277_SNP [dm3] 3L_11364177_SNP [dm6]	G	T	4.691e^-4	0.888	UPSTREAM CR45036 INTRON CG6163
3L	9491457	3L_9491457_SNP [dm3] 3L_9498357_SNP [dm6]	A	G	4.706e^-4	0.888	UPSTREAM path INTRON path
3L	11468666	3L_11468666_SNP [dm3] 3L_11475566_SNP [dm6]	T	A	4.706e^-4	0.888	DOWNSTREAM Vha16-2 INTERGENIC
3L	1397614	3L_1397614_SNP [dm3] 3L_1397614_SNP [dm6]	A	G	4.707e^-4	0.888	UPSTREAM tRNA:E4:62Aa & 4 others INTRON Ptp61F
2L	13433673	2L_13433673_SNP [dm3] 2L_13433673_SNP [dm6]	C	A	4.716e^-4	0.889	INTRON CG42784
3R	8937676	3R_8937676_DEL [dm3] 3R_13111954_DEL [dm6]	TT	T	4.727e^-4	0.89	INTRON timeout
3R	10522069	3R_10522069_SNP [dm3] 3R_14696347_SNP [dm6]	A	G	4.732e^-4	0.89	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19447302	2R_19447302_SNP [dm3] 2R_23559779_SNP [dm6]	A	C	4.757e^-4	0.894	NON_SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F
2L	3737258	2L_3737258_SNP [dm3] 2L_3737258_SNP [dm6]	C	T	4.782e^-4	0.897	INTRON CG10019
3R	13796692	3R_13796692_SNP [dm3] 3R_17970970_SNP [dm6]	T	C	4.786e^-4	0.897	INTRON cpo

By genomic position
Variant impact
Gene name

mn_SleepLength_Day phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results