DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.774e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.8596	0.0881
In_3R_P	5.2514	0.0724

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2230 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21708536	3R_21708536_SNP [dm3] 3R_25882814_SNP [dm6]	A	G	9.822e^-7	0.452	INTRON SppL
3R	21708575	3R_21708575_SNP [dm3] 3R_25882853_SNP [dm6]	A	T	1.087e^-6	0.452	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3R	21708584	3R_21708584_SNP [dm3] 3R_25882862_SNP [dm6]	A	T	1.087e^-6	0.452	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3R	21708517	3R_21708517_SNP [dm3] 3R_25882795_SNP [dm6]	T	A	1.172e^-6	0.452	INTRON SppL
3R	21708537	3R_21708537_SNP [dm3] 3R_25882815_SNP [dm6]	A	T	1.206e^-6	0.452	INTRON SppL
3R	21708757	3R_21708757_SNP [dm3] 3R_25883035_SNP [dm6]	T	G	2.634e^-6	0.569	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3L	12177686	3L_12177686_SNP [dm3] 3L_12184586_SNP [dm6]	G	T	2.643e^-6	0.569	UPSTREAM CG6910 INTERGENIC
X	4786089	X_4786089_SNP [dm3] X_4892056_SNP [dm6]	G	A	2.693e^-6	0.569	INTRON CG42594
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	2.732e^-6	0.569	INTRON sick
2L	19880241	2L_19880241_DEL [dm3] 2L_19880241_DEL [dm6]	TAAATGGCCT	T	3.040e^-6	0.57	INTRON sick
3R	22252607	3R_22252607_SNP [dm3] 3R_26426885_SNP [dm6]	A	G	3.366e^-6	0.574	INTRON CR31084
2L	8791522	2L_8791522_SNP [dm3] 2L_8791522_SNP [dm6]	T	C	3.912e^-6	0.611	INTERGENIC
X	16939659	X_16939659_SNP [dm3] X_17045626_SNP [dm6]	T	C	4.794e^-6	0.623	INTRON CG45002
3R	23971143	3R_23971143_SNP [dm3] 3R_28145421_SNP [dm6]	G	C	5.251e^-6	0.623	INTERGENIC
X	4786069	X_4786069_DEL [dm3] X_4892036_DEL [dm6]	TGCACAGCTTCTCAGC...	AT	5.352e^-6	0.623	INTRON CG42594
3R	21708484	3R_21708484_SNP [dm3] 3R_25882762_SNP [dm6]	A	T	5.365e^-6	0.623	INTRON SppL	TF binding site BDTNP1_TFBS_dl
3R	21708628	3R_21708628_DEL [dm3] 3R_25882906_DEL [dm6]	AAA	A	5.711e^-6	0.623	INTRON SppL	TF binding site BDTNP1_TFBS_dl
X	19118691	X_19118691_SNP [dm3] X_19224658_SNP [dm6]	G	A	6.217e^-6	0.623	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15193193	2R_15193193_SNP [dm3] 2R_19305688_SNP [dm6]	G	A	6.319e^-6	0.623	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	17188663	3L_17188663_SNP [dm3] 3L_17195563_SNP [dm6]	C	T	7.389e^-6	0.623	INTRON Rbp6	TF binding site mE1_TFBS_inv
X	12443360	X_12443360_SNP [dm3] X_12549327_SNP [dm6]	C	T	7.396e^-6	0.623	INTRON CG43921
3L	18643448	3L_18643448_SNP [dm3] 3L_18650348_SNP [dm6]	G	C	7.521e^-6	0.623	INTRON MYPT-75D
3L	21910242	3L_21910242_SNP [dm3] 3L_21917142_SNP [dm6]	C	T	7.826e^-6	0.623	INTRON mub	TF binding site mE1_TFBS_Trl
3L	18641616	3L_18641616_SNP [dm3] 3L_18648516_SNP [dm6]	C	G	7.969e^-6	0.623	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11478767	2L_11478767_SNP [dm3] 2L_11478767_SNP [dm6]	T	C	8.817e^-6	0.637	INTERGENIC
2L	13430888	2L_13430888_SNP [dm3] 2L_13430888_SNP [dm6]	T	C	9.242e^-6	0.637	INTRON CG42784
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	1.009e^-5	0.637	INTRON qsm
2L	7187631	2L_7187631_SNP [dm3] 2L_7187631_SNP [dm6]	C	T	1.028e^-5	0.637	SYNONYMOUS_CODING CG4496
X	20963049	X_20963049_SNP [dm3] X_21092022_SNP [dm6]	T	A	1.046e^-5	0.637	INTERGENIC
X	18845713	X_18845713_SNP [dm3] X_18951680_SNP [dm6]	G	A	1.051e^-5	0.637	INTRON CG43759
3R	15356846	3R_15356846_SNP [dm3] 3R_19531124_SNP [dm6]	G	T	1.053e^-5	0.637	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9409319	2R_9409319_SNP [dm3] 2R_13521814_SNP [dm6]	A	G	1.191e^-5	0.698	UTR_5_PRIME CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
3L	8615278	3L_8615278_SNP [dm3] 3L_8622178_SNP [dm6]	C	T	1.332e^-5	0.757	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
3L	22370177	3L_22370177_SNP [dm3] 3L_22377077_SNP [dm6]	T	A	1.433e^-5	0.774	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17664068	X_17664068_SNP [dm3] X_17770035_SNP [dm6]	T	A	1.466e^-5	0.774	INTRON unc-4
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	1.598e^-5	0.774	INTRON AdipoR
2L	16440636	2L_16440636_SNP [dm3] 2L_16440636_SNP [dm6]	A	T	1.634e^-5	0.774	INTRON CG5888
2L	9374227	2L_9374227_SNP [dm3] 2L_9374227_SNP [dm6]	C	T	1.637e^-5	0.774	DOWNSTREAM CR43865 INTRON Shawl
2R	16173125	2R_16173125_SNP [dm3] 2R_20285620_SNP [dm6]	T	C	1.674e^-5	0.774	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11923842	3L_11923842_SNP [dm3] 3L_11930742_SNP [dm6]	C	G	1.732e^-5	0.774	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5905713	2L_5905713_SNP [dm3] 2L_5905713_SNP [dm6]	A	G	1.743e^-5	0.774	EXON CR43808
3R	9432479	3R_9432479_DEL [dm3] 3R_13606757_DEL [dm6]	AATAATTTATGTTTGAAACT...	A	1.748e^-5	0.774	DOWNSTREAM CG9759 INTERGENIC
3L	10807799	3L_10807799_SNP [dm3] 3L_10814699_SNP [dm6]	C	T	1.946e^-5	0.774	UPSTREAM CG42831 INTERGENIC
3R	19142965	3R_19142965_SNP [dm3] 3R_23317243_SNP [dm6]	A	G	2.129e^-5	0.774	INTRON pnt
X	20436419	X_20436419_SNP [dm3] X_20565392_SNP [dm6]	C	G	2.214e^-5	0.774	SYNONYMOUS_CODING RunxB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23639356	3R_23639356_SNP [dm3] 3R_27813634_SNP [dm6]	G	C	2.251e^-5	0.774	INTRON CG34353
X	20431285	X_20431285_SNP [dm3] X_20560258_SNP [dm6]	A	G	2.274e^-5	0.774	INTRON RunxB
3L	10542142	3L_10542142_SNP [dm3] 3L_10549042_SNP [dm6]	T	C	2.302e^-5	0.774	INTRON A2bp1
3L	11955122	3L_11955122_SNP [dm3] 3L_11962022_SNP [dm6]	A	G	2.326e^-5	0.774	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	13343362	2R_13343362_SNP [dm3] 2R_17455857_SNP [dm6]	T	G	2.332e^-5	0.774	NON_SYNONYMOUS_CODING robls54B UPSTREAM robl DOWNSTREAM CG10764	TF binding site BDTNP1_TFBS_dl
X	6425207	X_6425207_SNP [dm3] X_6531174_SNP [dm6]	A	G	2.341e^-5	0.774	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other
3R	8861685	3R_8861685_SNP [dm3] 3R_13035963_SNP [dm6]	C	T	2.359e^-5	0.774	SYNONYMOUS_CODING ry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9491899	3L_9491899_SNP [dm3] 3L_9498799_SNP [dm6]	T	C	2.397e^-5	0.774	INTRON path
3R	25847004	3R_25847004_SNP [dm3] 3R_30021282_SNP [dm6]	T	G	2.427e^-5	0.774	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
X	12874359	X_12874359_SNP [dm3] X_12980326_SNP [dm6]	T	C	2.434e^-5	0.774	INTERGENIC
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	2.468e^-5	0.774	INTRON AdipoR
3R	22604195	3R_22604195_SNP [dm3] 3R_26778473_SNP [dm6]	C	T	2.525e^-5	0.774	INTERGENIC
3R	25550131	3R_25550131_SNP [dm3] 3R_29724409_SNP [dm6]	A	T	2.539e^-5	0.774	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	7127563	3R_7127563_SNP [dm3] 3R_11301841_SNP [dm6]	A	T	2.628e^-5	0.774	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
X	17663745	X_17663745_SNP [dm3] X_17769712_SNP [dm6]	G	T	2.655e^-5	0.774	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2R	15251358	2R_15251358_SNP [dm3] 2R_19363853_SNP [dm6]	G	T	2.686e^-5	0.774	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
3L	12417577	3L_12417577_SNP [dm3] 3L_12424477_SNP [dm6]	T	A	2.706e^-5	0.774	INTRON toe	TF binding site mE1_TFBS_cad
X	10213337	X_10213337_SNP [dm3] X_10319304_SNP [dm6]	A	G	2.717e^-5	0.774	INTRON alpha-Man-I
X	18845688	X_18845688_SNP [dm3] X_18951655_SNP [dm6]	A	T	2.743e^-5	0.774	INTRON CG43759
3R	17628117	3R_17628117_SNP [dm3] 3R_21802395_SNP [dm6]	C	G	3.079e^-5	0.774	INTRON CASK	TF binding site BDTNP1_TFBS_twi
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	3.100e^-5	0.774	INTRON pHCl
2L	15196955	2L_15196955_SNP [dm3] 2L_15196955_SNP [dm6]	A	T	3.169e^-5	0.774	INTRON CG4168
3L	21915282	3L_21915282_SNP [dm3] 3L_21922182_SNP [dm6]	C	T	3.190e^-5	0.774	INTRON mub
3R	25846960	3R_25846960_SNP [dm3] 3R_30021238_SNP [dm6]	C	T	3.269e^-5	0.774	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	13341327	3L_13341327_SNP [dm3] 3L_13348227_SNP [dm6]	A	C	3.275e^-5	0.774	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14647306	3R_14647306_SNP [dm3] 3R_18821584_SNP [dm6]	A	T	3.289e^-5	0.774	INTRON CG18208
3R	21624469	3R_21624469_SNP [dm3] 3R_25798747_SNP [dm6]	T	C	3.321e^-5	0.774	UPSTREAM CR43847 INTERGENIC
2R	19077738	2R_19077738_SNP [dm3] 2R_23190215_SNP [dm6]	T	A	3.333e^-5	0.774	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	21915333	3L_21915333_SNP [dm3] 3L_21922233_SNP [dm6]	A	T	3.346e^-5	0.774	INTRON mub
X	17374412	X_17374412_SNP [dm3] X_17480379_SNP [dm6]	A	C	3.510e^-5	0.774	INTRON CG43658
3R	25846963	3R_25846963_SNP [dm3] 3R_30021241_SNP [dm6]	A	G	3.536e^-5	0.774	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	22947150	3R_22947150_SNP [dm3] 3R_27121428_SNP [dm6]	G	A	3.566e^-5	0.774	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
3R	26216644	3R_26216644_DEL [dm3] 3R_30390922_DEL [dm6]	GTTG	G	3.590e^-5	0.774	DOWNSTREAM Fer2LCH INTERGENIC
3R	17985036	3R_17985036_SNP [dm3] 3R_22159314_SNP [dm6]	G	T	3.813e^-5	0.774	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	9409193	2R_9409193_SNP [dm3] 2R_13521688_SNP [dm6]	T	C	3.836e^-5	0.774	UPSTREAM CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad
2R	11063512	2R_11063512_SNP [dm3] 2R_15176007_SNP [dm6]	A	G	3.837e^-5	0.774	INTRON igl
3R	25845124	3R_25845124_SNP [dm3] 3R_30019402_SNP [dm6]	G	A	3.839e^-5	0.774	SYNONYMOUS_CODING Mgat2
2R	11063461	2R_11063461_SNP [dm3] 2R_15175956_SNP [dm6]	T	A	3.857e^-5	0.774	INTRON igl
3R	25260091	3R_25260091_SNP [dm3] 3R_29434369_SNP [dm6]	A	T	3.945e^-5	0.774	INTRON Ptp99A
3L	4156016	3L_4156016_SNP [dm3] 3L_4156016_SNP [dm6]	A	G	4.023e^-5	0.774	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12385790	3L_12385790_SNP [dm3] 3L_12392690_SNP [dm6]	C	T	4.032e^-5	0.774	INTERGENIC
3R	26216682	3R_26216682_SNP [dm3] 3R_30390960_SNP [dm6]	C	G	4.044e^-5	0.774	DOWNSTREAM Fer2LCH INTERGENIC
2L	4692611	2L_4692611_SNP [dm3] 2L_4692611_SNP [dm6]	T	G	4.108e^-5	0.774	INTERGENIC
3L	2854999	3L_2854999_SNP [dm3] 3L_2854999_SNP [dm6]	C	T	4.117e^-5	0.774	INTRON CG43444	TF binding site mE1_TFBS_sens
3L	3780823	3L_3780823_SNP [dm3] 3L_3780823_SNP [dm6]	C	T	4.171e^-5	0.774	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9545814	3L_9545814_SNP [dm3] 3L_9552714_SNP [dm6]	T	A	4.222e^-5	0.774	INTRON CG42673
2R	13544141	2R_13544141_DEL [dm3] 2R_17656636_DEL [dm6]	AA	A	4.224e^-5	0.774	INTRON CCHa1-R
3R	14697208	3R_14697208_INS [dm3] 3R_18871486_INS [dm6]	C	CTAC	4.310e^-5	0.774	INTERGENIC
2L	8588991	2L_8588991_SNP [dm3] 2L_8588991_SNP [dm6]	T	C	4.332e^-5	0.774	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3R	20830502	3R_20830502_SNP [dm3] 3R_25004780_SNP [dm6]	A	C	4.375e^-5	0.774	INTRON tnc	TF binding site mE1_TFBS_chinmo
3L	17379664	3L_17379664_SNP [dm3] 3L_17386564_SNP [dm6]	C	T	4.409e^-5	0.774	INTRON CG13731	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13881108	X_13881108_SNP [dm3] X_13987075_SNP [dm6]	T	G	4.475e^-5	0.774	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10544441	2R_10544441_SNP [dm3] 2R_14656936_SNP [dm6]	C	T	4.482e^-5	0.774	SYNONYMOUS_CODING Adgf-E
3R	25846942	3R_25846942_SNP [dm3] 3R_30021220_SNP [dm6]	A	T	4.589e^-5	0.774	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	19027446	3L_19027446_SNP [dm3] 3L_19034346_SNP [dm6]	T	A	4.671e^-5	0.774	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15193376	2R_15193376_SNP [dm3] 2R_19305871_SNP [dm6]	T	A	4.712e^-5	0.774	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26216686	3R_26216686_DEL [dm3] 3R_30390964_DEL [dm6]	TT	T	4.725e^-5	0.774	DOWNSTREAM Fer2LCH INTERGENIC
3R	21908938	3R_21908938_SNP [dm3] 3R_26083216_SNP [dm6]	C	A	4.792e^-5	0.774	INTRON dys
3L	7951339	3L_7951339_INS [dm3] 3L_7958239_INS [dm6]	C	CC	4.822e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16454537	2R_16454537_SNP [dm3] 2R_20567032_SNP [dm6]	T	C	4.840e^-5	0.774	INTRON qsm
2L	7088033	2L_7088033_SNP [dm3] 2L_7088033_SNP [dm6]	C	T	4.847e^-5	0.774	INTERGENIC
3L	17093022	3L_17093022_SNP [dm3] 3L_17099922_SNP [dm6]	G	C	4.981e^-5	0.774	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16702824	3R_16702824_SNP [dm3] 3R_20877102_SNP [dm6]	A	C	4.997e^-5	0.774	UPSTREAM TotZ INTERGENIC
3L	18159680	3L_18159680_SNP [dm3] 3L_18166580_SNP [dm6]	A	G	5.010e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14077989	X_14077989_SNP [dm3] X_14183956_SNP [dm6]	A	C	5.022e^-5	0.774	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
X	17664276	X_17664276_DEL [dm3] X_17770243_DEL [dm6]	AAAAAAAGTGTTAAGG...	A	5.026e^-5	0.774	INTRON unc-4
X	18847792	X_18847792_SNP [dm3] X_18953759_SNP [dm6]	C	T	5.035e^-5	0.774	INTRON CG43759
3R	22081365	3R_22081365_SNP [dm3] 3R_26255643_SNP [dm6]	C	A	5.102e^-5	0.774	DOWNSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_bcd
2L	14566262	2L_14566262_SNP [dm3] 2L_14566262_SNP [dm6]	A	G	5.104e^-5	0.774	INTERGENIC
3R	21441702	3R_21441702_SNP [dm3] 3R_25615980_SNP [dm6]	T	C	5.110e^-5	0.774	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7000831	3R_7000831_SNP [dm3] 3R_11175109_SNP [dm6]	T	C	5.130e^-5	0.774	UPSTREAM Ugt86Dh INTRON Ugt86Dj
3L	22384904	3L_22384904_SNP [dm3] 3L_22391804_SNP [dm6]	A	C	5.183e^-5	0.774	INTRON Ten-m
X	17021417	X_17021417_SNP [dm3] X_17127384_SNP [dm6]	A	C	5.207e^-5	0.774	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
3L	12278375	3L_12278375_INS [dm3] 3L_12285275_INS [dm6]	T	TTT	5.247e^-5	0.774	INTERGENIC
3L	16172808	3L_16172808_INS [dm3] 3L_16179708_INS [dm6]	T	TC	5.253e^-5	0.774	INTERGENIC
X	4855538	X_4855538_SNP [dm3] X_4961505_SNP [dm6]	T	C	5.327e^-5	0.774	UPSTREAM SIP3 INTRON CR44833
X	5020892	X_5020892_SNP [dm3] X_5126859_SNP [dm6]	T	C	5.363e^-5	0.774	INTRON rg & 1 other
3R	15518619	3R_15518619_SNP [dm3] 3R_19692897_SNP [dm6]	T	A	5.400e^-5	0.774	INTRON Naam
3L	18643873	3L_18643873_SNP [dm3] 3L_18650773_SNP [dm6]	G	T	5.418e^-5	0.774	INTRON MYPT-75D
2R	17890855	2R_17890855_SNP [dm3] 2R_22003350_SNP [dm6]	T	C	5.430e^-5	0.774	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9327885	3L_9327885_SNP [dm3] 3L_9334785_SNP [dm6]	A	G	5.434e^-5	0.774	SYNONYMOUS_CODING PGRP-LA UPSTREAM PGRP-LA
3R	26029300	3R_26029300_SNP [dm3] 3R_30203578_SNP [dm6]	A	G	5.471e^-5	0.774	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14015318	3R_14015318_SNP [dm3] 3R_18189596_SNP [dm6]	C	T	5.503e^-5	0.774	SYNONYMOUS_CODING MED17 UPSTREAM CG12321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16940341	X_16940341_SNP [dm3] X_17046308_SNP [dm6]	C	T	5.504e^-5	0.774	INTRON CG45002
3R	18037736	3R_18037736_SNP [dm3] 3R_22212014_SNP [dm6]	C	A	5.510e^-5	0.774	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP	TF binding site mE1_TFBS_cad
3R	23546655	3R_23546655_SNP [dm3] 3R_27720933_SNP [dm6]	G	A	5.585e^-5	0.774	INTERGENIC
2L	16235303	2L_16235303_DEL [dm3] 2L_16235303_DEL [dm6]	TTT	GG	5.640e^-5	0.774	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15210914	2L_15210914_SNP [dm3] 2L_15210914_SNP [dm6]	G	A	5.674e^-5	0.774	INTERGENIC
2L	3519311	2L_3519311_SNP [dm3] 2L_3519311_SNP [dm6]	G	A	5.705e^-5	0.774	SYNONYMOUS_CODING CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16940342	X_16940342_SNP [dm3] X_17046309_SNP [dm6]	G	A	5.779e^-5	0.774	INTRON CG45002
3R	26756165	3R_26756165_SNP [dm3] 3R_30930443_SNP [dm6]	C	G	5.796e^-5	0.774	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
2R	15193475	2R_15193475_SNP [dm3] 2R_19305970_SNP [dm6]	G	A	5.800e^-5	0.774	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7951606	3L_7951606_SNP [dm3] 3L_7958506_SNP [dm6]	G	C	5.821e^-5	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18821789	3R_18821789_SNP [dm3] 3R_22996067_SNP [dm6]	C	G	5.850e^-5	0.774	UPSTREAM CR43454 INTRON Nha2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3780789	3L_3780789_INS [dm3] 3L_3780789_INS [dm6]	G	GCTGCTG	5.860e^-5	0.774	CODON_INSERTION CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6430581	3L_6430581_SNP [dm3] 3L_6437481_SNP [dm6]	A	T	5.865e^-5	0.774	INTRON CG42747
3R	18183640	3R_18183640_SNP [dm3] 3R_22357918_SNP [dm6]	A	T	5.875e^-5	0.774	INTRON Sar1	TF binding site mE1_TFBS_sens
2L	9346044	2L_9346044_SNP [dm3] 2L_9346044_SNP [dm6]	C	T	5.931e^-5	0.774	INTERGENIC
X	12442897	X_12442897_SNP [dm3] X_12548864_SNP [dm6]	G	A	5.940e^-5	0.774	INTRON CG43921
3L	10807710	3L_10807710_SNP [dm3] 3L_10814610_SNP [dm6]	T	C	6.043e^-5	0.775	UPSTREAM CG42831 INTERGENIC
3L	3780832	3L_3780832_SNP [dm3] 3L_3780832_SNP [dm6]	T	C	6.053e^-5	0.775	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13624942	2R_13624942_SNP [dm3] 2R_17737437_SNP [dm6]	T	C	6.072e^-5	0.775	UPSTREAM CG6406 DOWNSTREAM CG6401 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8588990	2L_8588990_SNP [dm3] 2L_8588990_SNP [dm6]	T	G	6.244e^-5	0.777	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
2L	8791405	2L_8791405_SNP [dm3] 2L_8791405_SNP [dm6]	T	C	6.274e^-5	0.777	INTERGENIC
2L	7199087	2L_7199087_SNP [dm3] 2L_7199087_SNP [dm6]	C	T	6.327e^-5	0.777	INTRON CG4502
3R	20352479	3R_20352479_SNP [dm3] 3R_24526757_SNP [dm6]	G	A	6.412e^-5	0.777	NON_SYNONYMOUS_CODING CG13618
2L	7181407	2L_7181407_SNP [dm3] 2L_7181407_SNP [dm6]	C	T	6.496e^-5	0.777	UPSTREAM CG4495 INTERGENIC
3L	18641720	3L_18641720_SNP [dm3] 3L_18648620_SNP [dm6]	T	C	6.497e^-5	0.777	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
X	3148263	X_3148263_SNP [dm3] X_3254230_SNP [dm6]	T	A	6.530e^-5	0.777	INTRON dnc
X	12874651	X_12874651_SNP [dm3] X_12980618_SNP [dm6]	T	G	6.559e^-5	0.777	INTERGENIC
3L	7951317	3L_7951317_SNP [dm3] 3L_7958217_SNP [dm6]	C	T	6.591e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	6.628e^-5	0.777	INTRON slou
3R	23036817	3R_23036817_SNP [dm3] 3R_27211095_SNP [dm6]	T	C	6.653e^-5	0.777	INTERGENIC
2R	15251331	2R_15251331_SNP [dm3] 2R_19363826_SNP [dm6]	T	G	6.695e^-5	0.777	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2R	15251375	2R_15251375_SNP [dm3] 2R_19363870_SNP [dm6]	A	T	6.695e^-5	0.777	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
3L	16523892	3L_16523892_SNP [dm3] 3L_16530792_SNP [dm6]	A	G	6.726e^-5	0.777	INTRON CG43373
3L	22370162	3L_22370162_SNP [dm3] 3L_22377062_SNP [dm6]	A	T	6.759e^-5	0.777	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	4786132	X_4786132_SNP [dm3] X_4892099_SNP [dm6]	A	T	6.785e^-5	0.777	INTRON CG42594
X	4003710	X_4003710_DEL [dm3] X_4109677_DEL [dm6]	TTA	T	6.793e^-5	0.777	INTRON cib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	18037554	3R_18037554_SNP [dm3] 3R_22211832_SNP [dm6]	C	A	6.929e^-5	0.788	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP
3L	18641699	3L_18641699_SNP [dm3] 3L_18648599_SNP [dm6]	A	T	7.007e^-5	0.792	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
X	12875113	X_12875113_SNP [dm3] X_12981080_SNP [dm6]	A	G	7.231e^-5	0.805	INTERGENIC
2R	9238564	2R_9238564_SNP [dm3] 2R_13351059_SNP [dm6]	A	T	7.246e^-5	0.805	INTRON CR44206
2R	15251392	2R_15251392_SNP [dm3] 2R_19363887_SNP [dm6]	A	T	7.284e^-5	0.805	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
3R	20897699	3R_20897699_SNP [dm3] 3R_25071977_SNP [dm6]	A	G	7.299e^-5	0.805	SYNONYMOUS_CODING CG11836 DOWNSTREAM CG9996	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	6810137	X_6810137_SNP [dm3] X_6916104_SNP [dm6]	T	C	7.357e^-5	0.807	INTRON CG14431
2L	2688501	2L_2688501_SNP [dm3] 2L_2688501_SNP [dm6]	T	C	7.515e^-5	0.816	INTRON CG31690
3R	15245883	3R_15245883_DEL [dm3] 3R_19420161_DEL [dm6]	CTGATACACATCATAGCCGA...	C	7.598e^-5	0.816	INTRON CG31221
X	17664061	X_17664061_SNP [dm3] X_17770028_SNP [dm6]	G	C	7.647e^-5	0.816	INTRON unc-4
2L	9510963	2L_9510963_SNP [dm3] 2L_9510963_SNP [dm6]	G	A	7.665e^-5	0.816	INTRON CG33298
2L	6018285	2L_6018285_SNP [dm3] 2L_6018285_SNP [dm6]	G	T	7.720e^-5	0.816	INTRON H2.0
X	8865665	X_8865665_SNP [dm3] X_8971632_SNP [dm6]	G	A	7.732e^-5	0.816	INTRON rdgA
2R	7107346	2R_7107346_SNP [dm3] 2R_11219841_SNP [dm6]	A	T	7.785e^-5	0.816	UPSTREAM Syx6 & 1 other INTRON Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	5473215	3R_5473215_SNP [dm3] 3R_9647493_SNP [dm6]	T	C	7.872e^-5	0.816	INTRON Dh44
3R	26216676	3R_26216676_SNP [dm3] 3R_30390954_SNP [dm6]	C	T	7.876e^-5	0.816	DOWNSTREAM Fer2LCH INTERGENIC
3L	3780805	3L_3780805_SNP [dm3] 3L_3780805_SNP [dm6]	A	G	7.949e^-5	0.816	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19780125	2L_19780125_SNP [dm3] 2L_19780125_SNP [dm6]	G	A	7.964e^-5	0.816	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19376000	2R_19376000_SNP [dm3] 2R_23488477_SNP [dm6]	A	T	7.977e^-5	0.816	INTRON CG43795
2L	15200857	2L_15200857_SNP [dm3] 2L_15200857_SNP [dm6]	C	G	8.043e^-5	0.816	UPSTREAM CG4168 DOWNSTREAM Sfp35C INTERGENIC
X	20434775	X_20434775_SNP [dm3] X_20563748_SNP [dm6]	A	C	8.116e^-5	0.816	INTRON RunxB
2L	8588995	2L_8588995_SNP [dm3] 2L_8588995_SNP [dm6]	C	A	8.211e^-5	0.816	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3R	26490574	3R_26490574_SNP [dm3] 3R_30664852_SNP [dm6]	C	A	8.250e^-5	0.816	EXON CR45191
2R	13342941	2R_13342941_SNP [dm3] 2R_17455436_SNP [dm6]	G	A	8.319e^-5	0.816	NON_SYNONYMOUS_CODING CG10764 DOWNSTREAM robls54B
2R	12691939	2R_12691939_DEL [dm3] 2R_16804434_DEL [dm6]	TAACTCC	T	8.337e^-5	0.816	INTERGENIC
2L	15210904	2L_15210904_INS [dm3] 2L_15210904_INS [dm6]	T	ATACCCATTTTAATAG...	8.413e^-5	0.816	INTERGENIC
2R	9253867	2R_9253867_SNP [dm3] 2R_13366362_SNP [dm6]	G	A	8.489e^-5	0.816	INTERGENIC
2R	9253939	2R_9253939_SNP [dm3] 2R_13366434_SNP [dm6]	T	A	8.489e^-5	0.816	INTERGENIC
3R	13121770	3R_13121770_SNP [dm3] 3R_17296048_SNP [dm6]	A	C	8.504e^-5	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9253907	2R_9253907_SNP [dm3] 2R_13366402_SNP [dm6]	T	A	8.635e^-5	0.816	INTERGENIC
2R	15193499	2R_15193499_SNP [dm3] 2R_19305994_SNP [dm6]	G	A	8.649e^-5	0.816	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16451648	2R_16451648_SNP [dm3] 2R_20564143_SNP [dm6]	A	G	8.690e^-5	0.816	SYNONYMOUS_CODING qsm
3R	22355125	3R_22355125_SNP [dm3] 3R_26529403_SNP [dm6]	A	T	8.824e^-5	0.816	INTRON plum
2R	15251652	2R_15251652_SNP [dm3] 2R_19364147_SNP [dm6]	C	T	8.883e^-5	0.816	INTRON CG10051	TF binding site mE1_TFBS_cad
2R	15193496	2R_15193496_SNP [dm3] 2R_19305991_SNP [dm6]	T	C	8.922e^-5	0.816	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15193385	2R_15193385_SNP [dm3] 2R_19305880_SNP [dm6]	A	G	8.938e^-5	0.816	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16626348	2R_16626348_SNP [dm3] 2R_20738843_SNP [dm6]	T	C	8.953e^-5	0.816	INTRON dpr
X	17664033	X_17664033_SNP [dm3] X_17770000_SNP [dm6]	T	A	8.964e^-5	0.816	INTRON unc-4
3L	14058013	3L_14058013_SNP [dm3] 3L_14064913_SNP [dm6]	C	T	9.042e^-5	0.816	INTRON CG32138
3R	16891880	3R_16891880_SNP [dm3] 3R_21066158_SNP [dm6]	A	C	9.044e^-5	0.816	INTRON AnxB9	TF binding site mE1_TFBS_Trl
X	12876436	X_12876436_SNP [dm3] X_12982403_SNP [dm6]	C	T	9.062e^-5	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8659131	3R_8659131_SNP [dm3] 3R_12833409_SNP [dm6]	G	A	9.085e^-5	0.816	INTERGENIC
2R	10416114	2R_10416114_SNP [dm3] 2R_14528609_SNP [dm6]	G	A	9.125e^-5	0.816	INTRON ttv
2R	9253924	2R_9253924_SNP [dm3] 2R_13366419_SNP [dm6]	G	A	9.138e^-5	0.816	INTERGENIC
2L	6018303	2L_6018303_SNP [dm3] 2L_6018303_SNP [dm6]	G	A	9.193e^-5	0.816	INTRON H2.0
2R	15193067	2R_15193067_SNP [dm3] 2R_19305562_SNP [dm6]	G	C	9.231e^-5	0.816	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
2L	18716656	2L_18716656_SNP [dm3] 2L_18716656_SNP [dm6]	A	G	9.274e^-5	0.816	START_GAINED CG10348 UTR_5_PRIME CG10348	TF binding site mE1_TFBS_cad
3R	16858968	3R_16858968_SNP [dm3] 3R_21033246_SNP [dm6]	A	G	9.362e^-5	0.816	SYNONYMOUS_CODING Dhc93AB
3R	19032923	3R_19032923_SNP [dm3] 3R_23207201_SNP [dm6]	A	G	9.366e^-5	0.816	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	4206336	2L_4206336_SNP [dm3] 2L_4206336_SNP [dm6]	C	T	9.412e^-5	0.816	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	4131416	X_4131416_SNP [dm3] X_4237383_SNP [dm6]	G	A	9.510e^-5	0.816	INTERGENIC
2L	4206516	2L_4206516_SNP [dm3] 2L_4206516_SNP [dm6]	A	G	9.527e^-5	0.816	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12874799	X_12874799_SNP [dm3] X_12980766_SNP [dm6]	G	A	9.657e^-5	0.816	INTERGENIC
3R	23036840	3R_23036840_SNP [dm3] 3R_27211118_SNP [dm6]	C	G	9.725e^-5	0.816	INTERGENIC
3R	16651830	3R_16651830_SNP [dm3] 3R_20826108_SNP [dm6]	G	A	9.730e^-5	0.816	SYNONYMOUS_CODING AdSS UPSTREAM CR44047	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1816617	X_1816617_SNP [dm3] X_1922584_SNP [dm6]	C	T	9.779e^-5	0.816	SYNONYMOUS_CODING eIF2B-epsilon UPSTREAM Ocrl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25847049	3R_25847049_SNP [dm3] 3R_30021327_SNP [dm6]	A	T	9.849e^-5	0.816	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	15211007	2L_15211007_SNP [dm3] 2L_15211007_SNP [dm6]	T	A	9.856e^-5	0.816	INTERGENIC
3L	21842808	3L_21842808_SNP [dm3] 3L_21849708_SNP [dm6]	A	C	9.941e^-5	0.816	INTRON mub
3R	3753123	3R_3753123_SNP [dm3] 3R_7927401_SNP [dm6]	G	A	1.001e^-4	0.816	INTRON dsx
3R	6999443	3R_6999443_SNP [dm3] 3R_11173721_SNP [dm6]	G	C	1.003e^-4	0.816	NON_SYNONYMOUS_CODING Ugt86Dj
2L	905650	2L_905650_SNP [dm3] 2L_905650_SNP [dm6]	G	A	1.012e^-4	0.816	INTERGENIC
X	16710431	X_16710431_SNP [dm3] X_16816398_SNP [dm6]	A	G	1.014e^-4	0.816	UPSTREAM CG4829 & 1 other INTRON CG4829
3L	16973326	3L_16973326_SNP [dm3] 3L_16980226_SNP [dm6]	A	T	1.016e^-4	0.816	INTRON Exn
3L	1939528	3L_1939528_SNP [dm3] 3L_1939528_SNP [dm6]	A	G	1.018e^-4	0.816	UPSTREAM CG5687 EXON CR44536
3R	17985032	3R_17985032_SNP [dm3] 3R_22159310_SNP [dm6]	T	C	1.029e^-4	0.816	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	22469585	3L_22469585_SNP [dm3] 3L_22476485_SNP [dm6]	T	C	1.033e^-4	0.816	DOWNSTREAM CG11425 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12113255	2R_12113255_SNP [dm3] 2R_16225750_SNP [dm6]	A	G	1.035e^-4	0.816	UPSTREAM CG15706 & 1 other INTRON CG15706
X	17021883	X_17021883_SNP [dm3] X_17127850_SNP [dm6]	C	G	1.035e^-4	0.816	SYNONYMOUS_CODING CG5004
X	20436532	X_20436532_SNP [dm3] X_20565505_SNP [dm6]	C	G	1.040e^-4	0.816	NON_SYNONYMOUS_CODING RunxB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15520870	3R_15520870_SNP [dm3] 3R_19695148_SNP [dm6]	C	T	1.043e^-4	0.816	INTRON Naam
3R	15512379	3R_15512379_INS [dm3] 3R_19686657_INS [dm6]	A	AA	1.066e^-4	0.816	UPSTREAM Naam INTRON Naam
3R	19446540	3R_19446540_SNP [dm3] 3R_23620818_SNP [dm6]	A	C	1.071e^-4	0.816	INTRON CG31145
2L	7087621	2L_7087621_INS [dm3] 2L_7087621_INS [dm6]	T	TGA	1.072e^-4	0.816	INTERGENIC
3R	21953730	3R_21953730_SNP [dm3] 3R_26128008_SNP [dm6]	C	T	1.075e^-4	0.816	UPSTREAM CG31324 DOWNSTREAM CG14556 INTRON CG31324
2L	19878752	2L_19878752_SNP [dm3] 2L_19878752_SNP [dm6]	C	A	1.083e^-4	0.816	INTRON sick
3L	10965871	3L_10965871_SNP [dm3] 3L_10972771_SNP [dm6]	A	T	1.103e^-4	0.816	INTRON CG14147
X	9248357	X_9248357_SNP [dm3] X_9354324_SNP [dm6]	A	G	1.104e^-4	0.816	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16891841	3R_16891841_SNP [dm3] 3R_21066119_SNP [dm6]	T	G	1.106e^-4	0.816	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	10703451	3R_10703451_SNP [dm3] 3R_14877729_SNP [dm6]	A	C	1.107e^-4	0.816	INTERGENIC
3R	22081483	3R_22081483_SNP [dm3] 3R_26255761_SNP [dm6]	T	C	1.110e^-4	0.816	DOWNSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_bcd
3L	15683970	3L_15683970_SNP [dm3] 3L_15690870_SNP [dm6]	T	A	1.112e^-4	0.816	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	16891881	3R_16891881_SNP [dm3] 3R_21066159_SNP [dm6]	A	C	1.114e^-4	0.816	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	9224132	3R_9224132_SNP [dm3] 3R_13398410_SNP [dm6]	T	C	1.116e^-4	0.816	UTR_3_PRIME CG14377 DOWNSTREAM CG9796 & 1 other
X	3449529	X_3449529_SNP [dm3] X_3555496_SNP [dm6]	A	C	1.129e^-4	0.816	INTRON CG32791
3R	22772984	3R_22772984_SNP [dm3] 3R_26947262_SNP [dm6]	A	T	1.131e^-4	0.816	UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 2 others INTERGENIC
3R	18371244	3R_18371244_SNP [dm3] 3R_22545522_SNP [dm6]	C	A	1.133e^-4	0.816	INTRON AdipoR
3R	9393780	3R_9393780_SNP [dm3] 3R_13568058_SNP [dm6]	A	T	1.141e^-4	0.816	INTERGENIC
3L	11929159	3L_11929159_SNP [dm3] 3L_11936059_SNP [dm6]	C	T	1.143e^-4	0.816	DOWNSTREAM byn INTRON CG44837
3R	26698153	3R_26698153_SNP [dm3] 3R_30872431_SNP [dm6]	C	T	1.143e^-4	0.816	UPSTREAM CG15545 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15211022	2L_15211022_SNP [dm3] 2L_15211022_SNP [dm6]	C	T	1.144e^-4	0.816	INTERGENIC
3L	3785840	3L_3785840_SNP [dm3] 3L_3785840_SNP [dm6]	A	G	1.145e^-4	0.816	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6618258	2L_6618258_SNP [dm3] 2L_6618258_SNP [dm6]	C	T	1.151e^-4	0.816	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
2L	6302830	2L_6302830_SNP [dm3] 2L_6302830_SNP [dm6]	T	C	1.152e^-4	0.816	INTRON Ddr
3R	12260815	3R_12260815_SNP [dm3] 3R_16435093_SNP [dm6]	C	G	1.152e^-4	0.816	DOWNSTREAM CG17565 & 1 other INTRON CG14881	TF binding site mE1_TFBS_sens
3L	22404404	3L_22404404_SNP [dm3] 3L_22411304_SNP [dm6]	G	T	1.172e^-4	0.816	INTERGENIC
X	2409065	X_2409065_SNP [dm3] X_2515032_SNP [dm6]	T	C	1.173e^-4	0.816	INTRON trol
X	4786011	X_4786011_SNP [dm3] X_4891978_SNP [dm6]	G	A	1.196e^-4	0.816	INTRON CG42594
2R	15193490	2R_15193490_SNP [dm3] 2R_19305985_SNP [dm6]	C	T	1.199e^-4	0.816	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10133939	X_10133939_SNP [dm3] X_10239906_SNP [dm6]	A	T	1.203e^-4	0.816	INTRON Hk
2R	15193469	2R_15193469_SNP [dm3] 2R_19305964_SNP [dm6]	G	A	1.205e^-4	0.816	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10560486	3R_10560486_SNP [dm3] 3R_14734764_SNP [dm6]	G	C	1.206e^-4	0.816	INTRON eff	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25252404	3R_25252404_SNP [dm3] 3R_29426682_SNP [dm6]	G	C	1.207e^-4	0.816	INTRON Ptp99A
3R	12133451	3R_12133451_SNP [dm3] 3R_16307729_SNP [dm6]	G	A	1.209e^-4	0.816	INTRON Zip89B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12260816	3R_12260816_SNP [dm3] 3R_16435094_SNP [dm6]	A	T	1.217e^-4	0.816	DOWNSTREAM CG17565 & 1 other INTRON CG14881	TF binding site mE1_TFBS_sens
3R	17985020	3R_17985020_SNP [dm3] 3R_22159298_SNP [dm6]	T	C	1.219e^-4	0.816	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	3507663	3R_3507663_SNP [dm3] 3R_7681941_SNP [dm6]	G	A	1.236e^-4	0.816	INTRON Nlg1
3L	15721752	3L_15721752_SNP [dm3] 3L_15728652_SNP [dm6]	T	G	1.238e^-4	0.816	UPSTREAM comm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18822476	3R_18822476_SNP [dm3] 3R_22996754_SNP [dm6]	G	A	1.250e^-4	0.816	INTRON Nha2 EXON CR43454
3R	7000596	3R_7000596_SNP [dm3] 3R_11174874_SNP [dm6]	G	A	1.252e^-4	0.816	SYNONYMOUS_CODING Ugt86Dj UPSTREAM Ugt86Dh
2R	15193070	2R_15193070_SNP [dm3] 2R_19305565_SNP [dm6]	C	G	1.258e^-4	0.816	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3R	10560498	3R_10560498_SNP [dm3] 3R_14734776_SNP [dm6]	T	C	1.262e^-4	0.816	INTRON eff	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17889427	3R_17889427_SNP [dm3] 3R_22063705_SNP [dm6]	C	A	1.266e^-4	0.816	INTRON how
3L	2500414	3L_2500414_SNP [dm3] 3L_2500414_SNP [dm6]	C	G	1.268e^-4	0.816	SYNONYMOUS_CODING CG16758	TF binding site mE1_TFBS_chinmo
X	6388493	X_6388493_SNP [dm3] X_6494460_SNP [dm6]	G	A	1.274e^-4	0.816	INTRON CG42340
2R	18053099	2R_18053099_SNP [dm3] 2R_22165594_SNP [dm6]	A	G	1.275e^-4	0.816	UPSTREAM CG34206 INTRON a
2R	9451290	2R_9451290_SNP [dm3] 2R_13563785_SNP [dm6]	A	G	1.276e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	19978833	2R_19978833_SNP [dm3] 2R_24091310_SNP [dm6]	G	A	1.278e^-4	0.816	SYNONYMOUS_CODING snama DOWNSTREAM gek
2R	16575271	2R_16575271_SNP [dm3] 2R_20687766_SNP [dm6]	G	C	1.280e^-4	0.816	UPSTREAM Gr57a INTERGENIC
3L	11917276	3L_11917276_SNP [dm3] 3L_11924176_SNP [dm6]	T	C	1.285e^-4	0.816	SYNONYMOUS_CODING CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	21440143	3R_21440143_SNP [dm3] 3R_25614421_SNP [dm6]	G	C	1.289e^-4	0.816	DOWNSTREAM CG5079 INTRON Npl4
3L	10362588	3L_10362588_SNP [dm3] 3L_10369488_SNP [dm6]	T	A	1.299e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
X	20963201	X_20963201_SNP [dm3] X_21092174_SNP [dm6]	T	A	1.300e^-4	0.816	INTERGENIC
3R	23641408	3R_23641408_SNP [dm3] 3R_27815686_SNP [dm6]	C	A	1.305e^-4	0.816	INTRON CG34353
3L	5161079	3L_5161079_SNP [dm3] 3L_5167979_SNP [dm6]	C	T	1.315e^-4	0.816	INTRON shep
2L	6990019	2L_6990019_SNP [dm3] 2L_6990019_SNP [dm6]	A	T	1.325e^-4	0.816	INTRON uif
3L	17982951	3L_17982951_SNP [dm3] 3L_17989851_SNP [dm6]	T	G	1.328e^-4	0.816	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14972045	3R_14972045_SNP [dm3] 3R_19146323_SNP [dm6]	C	T	1.334e^-4	0.816	INTRON Ppcs
3R	5025546	3R_5025546_SNP [dm3] 3R_9199824_SNP [dm6]	G	T	1.336e^-4	0.816	INTRON pum
2L	19928435	2L_19928435_SNP [dm3] 2L_19928435_SNP [dm6]	C	T	1.348e^-4	0.816	INTRON sick
2R	9308792	2R_9308792_SNP [dm3] 2R_13421287_SNP [dm6]	A	G	1.353e^-4	0.816	SYNONYMOUS_CODING CG42321
3L	3113042	3L_3113042_SNP [dm3] 3L_3113042_SNP [dm6]	T	G	1.377e^-4	0.816	SPLICE_SITE_REGION CG45067 INTRON CG45067
3L	21936224	3L_21936224_SNP [dm3] 3L_21943124_SNP [dm6]	C	G	1.387e^-4	0.816	INTRON CG14562
2L	4206416	2L_4206416_SNP [dm3] 2L_4206416_SNP [dm6]	G	A	1.388e^-4	0.816	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	14666161	X_14666161_SNP [dm3] X_14772128_SNP [dm6]	A	G	1.388e^-4	0.816	INTERGENIC
3L	11407105	3L_11407105_SNP [dm3] 3L_11414005_SNP [dm6]	T	G	1.391e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	22384891	3L_22384891_SNP [dm3] 3L_22391791_SNP [dm6]	C	G	1.393e^-4	0.816	INTRON Ten-m
3R	25847019	3R_25847019_SNP [dm3] 3R_30021297_SNP [dm6]	T	C	1.406e^-4	0.816	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	17982949	3L_17982949_SNP [dm3] 3L_17989849_SNP [dm6]	G	T	1.421e^-4	0.816	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19874712	2L_19874712_SNP [dm3] 2L_19874712_SNP [dm6]	T	C	1.426e^-4	0.816	INTRON sick	TF binding site mE1_TFBS_cad
2L	6514626	2L_6514626_SNP [dm3] 2L_6514626_SNP [dm6]	G	A	1.432e^-4	0.816	INTRON CG31637
3L	15721427	3L_15721427_SNP [dm3] 3L_15728327_SNP [dm6]	A	G	1.436e^-4	0.816	UTR_5_PRIME comm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	18064857	3R_18064857_SNP [dm3] 3R_22239135_SNP [dm6]	C	G	1.437e^-4	0.816	INTRON SKIP
X	15317694	X_15317694_SNP [dm3] X_15423661_SNP [dm6]	C	T	1.443e^-4	0.816	INTRON Cngl
3L	7247184	3L_7247184_SNP [dm3] 3L_7254084_SNP [dm6]	T	A	1.444e^-4	0.816	INTRON CG14830
2R	8443057	2R_8443057_SNP [dm3] 2R_12555552_SNP [dm6]	T	A	1.446e^-4	0.816	INTRON fra
3R	17687571	3R_17687571_SNP [dm3] 3R_21861849_SNP [dm6]	T	C	1.449e^-4	0.816	UPSTREAM CR45644 EXON CR45645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17188705	3L_17188705_SNP [dm3] 3L_17195605_SNP [dm6]	T	C	1.457e^-4	0.816	INTRON Rbp6	TF binding site mE1_TFBS_inv
3L	14900244	3L_14900244_SNP [dm3] 3L_14907144_SNP [dm6]	G	A	1.467e^-4	0.816	INTRON DCX-EMAP
2R	10415648	2R_10415648_SNP [dm3] 2R_14528143_SNP [dm6]	G	A	1.471e^-4	0.816	INTRON ttv
2L	10107554	2L_10107554_SNP [dm3] 2L_10107554_SNP [dm6]	A	G	1.475e^-4	0.816	INTRON CG44153 & 1 other
3L	11407082	3L_11407082_SNP [dm3] 3L_11413982_SNP [dm6]	T	A	1.475e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	18417294	X_18417294_INS [dm3] X_18523261_INS [dm6]	C	CC	1.476e^-4	0.816	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18417297	X_18417297_INS [dm3] X_18523264_INS [dm6]	A	AATTGA	1.476e^-4	0.816	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11063482	2R_11063482_SNP [dm3] 2R_15175977_SNP [dm6]	C	T	1.483e^-4	0.816	INTRON igl
3R	8660842	3R_8660842_SNP [dm3] 3R_12835120_SNP [dm6]	A	T	1.484e^-4	0.816	INTERGENIC
3L	22355457	3L_22355457_SNP [dm3] 3L_22362357_SNP [dm6]	C	T	1.491e^-4	0.816	INTRON Ten-m
2R	15251644	2R_15251644_SNP [dm3] 2R_19364139_SNP [dm6]	A	T	1.496e^-4	0.816	INTRON CG10051	TF binding site mE1_TFBS_cad
3L	1735707	3L_1735707_SNP [dm3] 3L_1735707_SNP [dm6]	C	T	1.510e^-4	0.816	UTR_5_PRIME Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3R	23496173	3R_23496173_SNP [dm3] 3R_27670451_SNP [dm6]	C	T	1.510e^-4	0.816	SYNONYMOUS_CODING unc80
2R	15016737	2R_15016737_SNP [dm3] 2R_19129232_SNP [dm6]	G	A	1.513e^-4	0.816	START_GAINED CG15117 UTR_5_PRIME CG15117 UPSTREAM botv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22081271	3R_22081271_SNP [dm3] 3R_26255549_SNP [dm6]	C	T	1.513e^-4	0.816	DOWNSTREAM Ald INTRON Ald
3R	25845115	3R_25845115_SNP [dm3] 3R_30019393_SNP [dm6]	A	G	1.513e^-4	0.816	SYNONYMOUS_CODING Mgat2
X	17021372	X_17021372_SNP [dm3] X_17127339_SNP [dm6]	C	T	1.518e^-4	0.816	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
3R	9205552	3R_9205552_SNP [dm3] 3R_13379830_SNP [dm6]	C	G	1.522e^-4	0.816	UPSTREAM CG8870 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15822284	3R_15822284_SNP [dm3] 3R_19996562_SNP [dm6]	C	T	1.528e^-4	0.816	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6292769	2L_6292769_SNP [dm3] 2L_6292769_SNP [dm6]	T	C	1.532e^-4	0.816	INTRON Ddr
3L	8595159	3L_8595159_SNP [dm3] 3L_8602059_SNP [dm6]	T	G	1.535e^-4	0.816	DOWNSTREAM CG5989 & 2 others INTRON RpL14	TF binding site mE1_TFBS_sens
3R	25853936	3R_25853936_SNP [dm3] 3R_30028214_SNP [dm6]	A	C	1.535e^-4	0.816	INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25963825	3R_25963825_SNP [dm3] 3R_30138103_SNP [dm6]	G	A	1.536e^-4	0.816	SYNONYMOUS_CODING AdoR	TF binding site mE1_TFBS_cad
X	12215370	X_12215370_SNP [dm3] X_12321337_SNP [dm6]	A	T	1.538e^-4	0.816	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
2L	3412898	2L_3412898_SNP [dm3] 2L_3412898_SNP [dm6]	G	A	1.543e^-4	0.816	INTRON pgant2
2R	15251359	2R_15251359_SNP [dm3] 2R_19363854_SNP [dm6]	C	T	1.546e^-4	0.816	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
2R	6393426	2R_6393426_SNP [dm3] 2R_10505921_SNP [dm6]	C	T	1.552e^-4	0.816	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19010090	3R_19010090_SNP [dm3] 3R_23184368_SNP [dm6]	C	T	1.554e^-4	0.816	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26029240	3R_26029240_SNP [dm3] 3R_30203518_SNP [dm6]	C	A	1.557e^-4	0.816	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20460967	X_20460967_SNP [dm3] X_20589940_SNP [dm6]	C	G	1.557e^-4	0.816	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13966795	3L_13966795_SNP [dm3] 3L_13973695_SNP [dm6]	G	A	1.566e^-4	0.816	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22449822	3L_22449822_SNP [dm3] 3L_22456722_SNP [dm6]	C	A	1.571e^-4	0.816	DOWNSTREAM CG11449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
X	20461186	X_20461186_SNP [dm3] X_20590159_SNP [dm6]	T	C	1.581e^-4	0.816	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	9511050	2L_9511050_SNP [dm3] 2L_9511050_SNP [dm6]	A	T	1.582e^-4	0.816	INTRON CG33298
3R	22888958	3R_22888958_SNP [dm3] 3R_27063236_SNP [dm6]	C	T	1.582e^-4	0.816	DOWNSTREAM CG34292 INTRON Nep5
3L	16440986	3L_16440986_SNP [dm3] 3L_16447886_SNP [dm6]	C	T	1.585e^-4	0.816	INTRON CG33158 & 1 other
3L	8595155	3L_8595155_SNP [dm3] 3L_8602055_SNP [dm6]	A	G	1.585e^-4	0.816	DOWNSTREAM CG5989 & 2 others INTRON RpL14	TF binding site mE1_TFBS_sens
3R	26151267	3R_26151267_SNP [dm3] 3R_30325545_SNP [dm6]	A	G	1.590e^-4	0.816	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	11624304	3L_11624304_SNP [dm3] 3L_11631204_SNP [dm6]	A	T	1.613e^-4	0.816	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3L	15020218	3L_15020218_SNP [dm3] 3L_15027118_SNP [dm6]	A	T	1.614e^-4	0.816	INTRON Sytbeta
3L	2501571	3L_2501571_INS [dm3] 3L_2501571_INS [dm6]	C	TATAAT	1.622e^-4	0.816	INTRON CG16758
X	14168852	X_14168852_SNP [dm3] X_14274819_SNP [dm6]	T	A	1.666e^-4	0.816	INTRON na
3L	11319783	3L_11319783_SNP [dm3] 3L_11326683_SNP [dm6]	A	G	1.666e^-4	0.816	INTERGENIC
2R	2880518	2R_2880518_INS [dm3] 2R_6993013_INS [dm6]	T	TT	1.667e^-4	0.816	UTR_5_PRIME CG30159 INTRON Tsp42Ea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10968907	2R_10968907_SNP [dm3] 2R_15081402_SNP [dm6]	A	C	1.673e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10954368	2R_10954368_SNP [dm3] 2R_15066863_SNP [dm6]	A	G	1.674e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
X	3045475	X_3045475_SNP [dm3] X_3151442_SNP [dm6]	C	T	1.689e^-4	0.816	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	12875437	X_12875437_SNP [dm3] X_12981404_SNP [dm6]	G	A	1.690e^-4	0.816	INTERGENIC
3R	21761248	3R_21761248_SNP [dm3] 3R_25935526_SNP [dm6]	G	T	1.693e^-4	0.816	INTRON CCAP-R
3R	25963758	3R_25963758_SNP [dm3] 3R_30138036_SNP [dm6]	A	G	1.707e^-4	0.816	INTRON AdoR	TF binding site mE1_TFBS_cad
3R	10346434	3R_10346434_SNP [dm3] 3R_14520712_SNP [dm6]	A	G	1.708e^-4	0.816	UPSTREAM Cyp313a1 INTRON Pde6
3R	18631638	3R_18631638_SNP [dm3] 3R_22805916_SNP [dm6]	C	G	1.715e^-4	0.816	SYNONYMOUS_CODING CG7031	TF binding site mE1_TFBS_cad
3L	14058494	3L_14058494_SNP [dm3] 3L_14065394_SNP [dm6]	T	G	1.720e^-4	0.816	INTRON CG32138	TF binding site mE1_TFBS_cad
X	17664059	X_17664059_SNP [dm3] X_17770026_SNP [dm6]	A	G	1.727e^-4	0.816	INTRON unc-4
2R	11599602	2R_11599602_SNP [dm3] 2R_15712097_SNP [dm6]	T	C	1.733e^-4	0.816	INTRON CG30083
X	14078146	X_14078146_SNP [dm3] X_14184113_SNP [dm6]	G	T	1.736e^-4	0.816	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
3R	3703173	3R_3703173_SNP [dm3] 3R_7877451_SNP [dm6]	G	C	1.742e^-4	0.816	INTRON CG17816
3R	10608200	3R_10608200_SNP [dm3] 3R_14782478_SNP [dm6]	A	G	1.756e^-4	0.816	INTRON jvl
3R	22376081	3R_22376081_SNP [dm3] 3R_26550359_SNP [dm6]	A	T	1.757e^-4	0.816	INTRON scrib	TF binding site BDTNP1_TFBS_twi
3R	4107729	3R_4107729_SNP [dm3] 3R_8282007_SNP [dm6]	C	T	1.760e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	4284982	X_4284982_SNP [dm3] X_4390949_SNP [dm6]	C	T	1.763e^-4	0.816	INTRON CR32773
3L	1462049	3L_1462049_SNP [dm3] 3L_1462049_SNP [dm6]	G	A	1.765e^-4	0.816	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8331514	2L_8331514_SNP [dm3] 2L_8331514_SNP [dm6]	A	G	1.765e^-4	0.816	INTRON CG14275
3L	22384903	3L_22384903_SNP [dm3] 3L_22391803_SNP [dm6]	T	A	1.768e^-4	0.816	INTRON Ten-m
X	5328716	X_5328716_SNP [dm3] X_5434683_SNP [dm6]	A	G	1.769e^-4	0.816	INTRON CR44471
3L	2974302	3L_2974302_SNP [dm3] 3L_2974302_SNP [dm6]	C	T	1.782e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20378508	2R_20378508_SNP [dm3] 2R_24490985_SNP [dm6]	C	A	1.793e^-4	0.816	DOWNSTREAM CG13579 INTERGENIC
2R	9352516	2R_9352516_SNP [dm3] 2R_13465011_SNP [dm6]	G	T	1.800e^-4	0.816	INTRON arr	TF binding site mE1_TFBS_inv
3L	22461077	3L_22461077_SNP [dm3] 3L_22467977_SNP [dm6]	G	T	1.803e^-4	0.816	UTR_3_PRIME CG11438 UPSTREAM CG11437	TF binding site mE1_TFBS_cad
X	7150925	X_7150925_SNP [dm3] X_7256892_SNP [dm6]	A	T	1.812e^-4	0.816	INTRON CR44357
3L	5903156	3L_5903156_SNP [dm3] 3L_5910056_SNP [dm6]	A	T	1.820e^-4	0.816	DOWNSTREAM CG13288 INTRON CG13288
X	19118629	X_19118629_SNP [dm3] X_19224596_SNP [dm6]	G	T	1.820e^-4	0.816	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17664316	X_17664316_SNP [dm3] X_17770283_SNP [dm6]	A	C	1.826e^-4	0.816	INTRON unc-4
2R	10544301	2R_10544301_SNP [dm3] 2R_14656796_SNP [dm6]	G	A	1.831e^-4	0.816	DOWNSTREAM Adgf-E INTERGENIC
2R	18053103	2R_18053103_DEL [dm3] 2R_22165598_DEL [dm6]	AA	A	1.835e^-4	0.816	INTRON a
3R	23810790	3R_23810790_SNP [dm3] 3R_27985068_SNP [dm6]	G	T	1.836e^-4	0.816	INTRON betaTub97EF
3R	18371243	3R_18371243_SNP [dm3] 3R_22545521_SNP [dm6]	A	C	1.838e^-4	0.816	INTRON AdipoR
3R	25095042	3R_25095042_SNP [dm3] 3R_29269320_SNP [dm6]	T	G	1.850e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11929852	3L_11929852_SNP [dm3] 3L_11936752_SNP [dm6]	A	G	1.856e^-4	0.816	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18867827	X_18867827_SNP [dm3] X_18973794_SNP [dm6]	C	T	1.859e^-4	0.816	INTRON CG43759
X	17664612	X_17664612_SNP [dm3] X_17770579_SNP [dm6]	A	C	1.859e^-4	0.816	INTRON unc-4
3R	22245397	3R_22245397_SNP [dm3] 3R_26419675_SNP [dm6]	C	G	1.868e^-4	0.816	INTERGENIC
2L	19879036	2L_19879036_SNP [dm3] 2L_19879036_SNP [dm6]	A	T	1.881e^-4	0.816	INTRON sick
3L	1519394	3L_1519394_SNP [dm3] 3L_1519394_SNP [dm6]	C	A	1.882e^-4	0.816	INTRON Psa
2L	11448722	2L_11448722_SNP [dm3] 2L_11448722_SNP [dm6]	C	A	1.887e^-4	0.816	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18316170	3R_18316170_SNP [dm3] 3R_22490448_SNP [dm6]	T	C	1.887e^-4	0.816	NON_SYNONYMOUS_CODING T-cp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5221713	3L_5221713_SNP [dm3] 3L_5228613_SNP [dm6]	T	C	1.893e^-4	0.816	INTRON shep
3R	8671063	3R_8671063_SNP [dm3] 3R_12845341_SNP [dm6]	T	C	1.905e^-4	0.816	INTRON beat-Va
3L	10807672	3L_10807672_SNP [dm3] 3L_10814572_SNP [dm6]	C	T	1.916e^-4	0.816	UPSTREAM CG42831 INTERGENIC
2L	20253298	2L_20253298_SNP [dm3] 2L_20253298_SNP [dm6]	T	A	1.918e^-4	0.816	DOWNSTREAM CR40465 INTERGENIC
3L	10420852	3L_10420852_SNP [dm3] 3L_10427752_SNP [dm6]	C	T	1.934e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18059183	3R_18059183_SNP [dm3] 3R_22233461_SNP [dm6]	G	A	1.941e^-4	0.816	INTRON SKIP
3L	16440906	3L_16440906_SNP [dm3] 3L_16447806_SNP [dm6]	C	T	1.947e^-4	0.816	INTRON CG33158 & 1 other
2L	13029990	2L_13029990_SNP [dm3] 2L_13029990_SNP [dm6]	C	T	1.958e^-4	0.816	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19792364	X_19792364_DEL [dm3] X_19898331_DEL [dm6]	GGCTTTCTG	G	1.964e^-4	0.816	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14666083	X_14666083_SNP [dm3] X_14772050_SNP [dm6]	G	A	1.966e^-4	0.816	INTERGENIC
3L	9089243	3L_9089243_SNP [dm3] 3L_9096143_SNP [dm6]	T	C	1.974e^-4	0.816	UPSTREAM CG13315 INTERGENIC
3R	25853941	3R_25853941_SNP [dm3] 3R_30028219_SNP [dm6]	A	G	1.977e^-4	0.816	INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10137255	X_10137255_SNP [dm3] X_10243222_SNP [dm6]	A	G	1.989e^-4	0.816	INTRON Hk
3R	22074128	3R_22074128_SNP [dm3] 3R_26248406_SNP [dm6]	C	T	1.994e^-4	0.816	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19562261	3R_19562261_SNP [dm3] 3R_23736539_SNP [dm6]	T	C	2.011e^-4	0.816	INTRON Hmgcr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	19378459	3R_19378459_SNP [dm3] 3R_23552737_SNP [dm6]	G	A	2.011e^-4	0.816	INTERGENIC
3R	8580678	3R_8580678_SNP [dm3] 3R_12754956_SNP [dm6]	T	C	2.030e^-4	0.816	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17657811	3R_17657811_SNP [dm3] 3R_21832089_SNP [dm6]	C	T	2.035e^-4	0.816	UPSTREAM Gr93a INTERGENIC
2R	12113265	2R_12113265_SNP [dm3] 2R_16225760_SNP [dm6]	T	A	2.037e^-4	0.816	UPSTREAM CG15706 & 1 other INTRON CG15706
X	17729205	X_17729205_SNP [dm3] X_17835172_SNP [dm6]	A	T	2.040e^-4	0.816	INTRON CG6398
2R	14398881	2R_14398881_SNP [dm3] 2R_18511376_SNP [dm6]	T	A	2.044e^-4	0.816	INTERGENIC
3R	5683436	3R_5683436_SNP [dm3] 3R_9857714_SNP [dm6]	C	T	2.045e^-4	0.816	INTRON Teh1
3R	23546666	3R_23546666_SNP [dm3] 3R_27720944_SNP [dm6]	T	A	2.047e^-4	0.816	INTERGENIC
3L	15642631	3L_15642631_SNP [dm3] 3L_15649531_SNP [dm6]	G	A	2.051e^-4	0.816	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
2L	13429625	2L_13429625_SNP [dm3] 2L_13429625_SNP [dm6]	G	C	2.054e^-4	0.816	INTRON CG42784	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	15821775	3R_15821775_SNP [dm3] 3R_19996053_SNP [dm6]	G	A	2.059e^-4	0.816	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20823700	3R_20823700_SNP [dm3] 3R_24997978_SNP [dm6]	T	C	2.071e^-4	0.816	INTRON tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14611594	3R_14611594_SNP [dm3] 3R_18785872_SNP [dm6]	A	C	2.071e^-4	0.816	INTRON CG7720
3R	19595463	3R_19595463_SNP [dm3] 3R_23769741_SNP [dm6]	C	A	2.072e^-4	0.816	SYNONYMOUS_CODING tst DOWNSTREAM CG10375
2L	19878751	2L_19878751_SNP [dm3] 2L_19878751_SNP [dm6]	G	A	2.089e^-4	0.816	INTRON sick
X	3734010	X_3734010_SNP [dm3] X_3839977_SNP [dm6]	T	C	2.094e^-4	0.816	INTRON ec	TF binding site BDTNP1_TFBS_dl
2R	9601147	2R_9601147_SNP [dm3] 2R_13713642_SNP [dm6]	A	G	2.095e^-4	0.816	INTRON fas
3R	17735740	3R_17735740_SNP [dm3] 3R_21910018_SNP [dm6]	A	T	2.098e^-4	0.816	INTERGENIC
2L	17387290	2L_17387290_SNP [dm3] 2L_17387290_SNP [dm6]	T	G	2.099e^-4	0.816	INTRON CLIP-190
2R	8865000	2R_8865000_SNP [dm3] 2R_12977495_SNP [dm6]	C	A	2.101e^-4	0.816	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5678262	3L_5678262_SNP [dm3] 3L_5685162_SNP [dm6]	A	G	2.104e^-4	0.816	INTRON sif
X	16160042	X_16160042_DEL [dm3] X_16266009_DEL [dm6]	TACTTGAACACA...	T	2.107e^-4	0.816	DOWNSTREAM kat80 INTRON CG12507
3L	4512094	3L_4512094_SNP [dm3] 3L_4512094_SNP [dm6]	T	A	2.109e^-4	0.816	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19374978	2R_19374978_SNP [dm3] 2R_23487455_SNP [dm6]	A	G	2.110e^-4	0.816	INTRON CG43795
2R	18381157	2R_18381157_SNP [dm3] 2R_22493652_SNP [dm6]	T	C	2.115e^-4	0.816	SYNONYMOUS_CODING CG4610 DOWNSTREAM px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16159971	X_16159971_DEL [dm3] X_16265938_DEL [dm6]	TT	T	2.124e^-4	0.816	INTRON CG12507
2L	15210977	2L_15210977_DEL [dm3] 2L_15210977_DEL [dm6]	AA	A	2.125e^-4	0.816	INTERGENIC
3R	23207321	3R_23207321_SNP [dm3] 3R_27381599_SNP [dm6]	A	G	2.126e^-4	0.816	UTR_3_PRIME side INTRON side
X	9422390	X_9422390_SNP [dm3] X_9528357_SNP [dm6]	T	C	2.130e^-4	0.816	INTRON CG32700
3R	3891824	3R_3891824_SNP [dm3] 3R_8066102_SNP [dm6]	C	G	2.135e^-4	0.816	INTRON mAChR-B
2R	18365792	2R_18365792_SNP [dm3] 2R_22478287_SNP [dm6]	T	C	2.138e^-4	0.816	UPSTREAM CG45063 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	23504471	3R_23504471_SNP [dm3] 3R_27678749_SNP [dm6]	A	C	2.140e^-4	0.816	NON_SYNONYMOUS_CODING CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	14098879	2R_14098879_SNP [dm3] 2R_18211374_SNP [dm6]	C	G	2.144e^-4	0.816	DOWNSTREAM CR45147 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19928432	2L_19928432_SNP [dm3] 2L_19928432_SNP [dm6]	T	C	2.148e^-4	0.816	INTRON sick
3R	3887309	3R_3887309_SNP [dm3] 3R_8061587_SNP [dm6]	T	C	2.154e^-4	0.816	INTRON mAChR-B	TF binding site mE1_TFBS_inv
3L	5624954	3L_5624954_SNP [dm3] 3L_5631854_SNP [dm6]	G	A	2.160e^-4	0.816	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
3L	18630130	3L_18630130_SNP [dm3] 3L_18637030_SNP [dm6]	G	A	2.185e^-4	0.816	INTRON MYPT-75D
3L	11624731	3L_11624731_INS [dm3] 3L_11631631_INS [dm6]	T	TTCT	2.194e^-4	0.816	DOWNSTREAM CG18815 INTRON CG32091
3R	18371293	3R_18371293_SNP [dm3] 3R_22545571_SNP [dm6]	A	G	2.196e^-4	0.816	INTRON AdipoR
3L	13550569	3L_13550569_SNP [dm3] 3L_13557469_SNP [dm6]	A	G	2.201e^-4	0.816	UPSTREAM CR45178 INTRON bru-3
2R	4495164	2R_4495164_SNP [dm3] 2R_8607659_SNP [dm6]	T	G	2.212e^-4	0.816	INTRON rgr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	2.218e^-4	0.816	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2R	9253868	2R_9253868_SNP [dm3] 2R_13366363_SNP [dm6]	A	T	2.220e^-4	0.816	INTERGENIC
2L	19636320	2L_19636320_SNP [dm3] 2L_19636320_SNP [dm6]	A	G	2.223e^-4	0.816	INTRON Lar
2R	13795624	2R_13795624_SNP [dm3] 2R_17908119_SNP [dm6]	A	T	2.226e^-4	0.816	INTRON Elk
3L	11624286	3L_11624286_SNP [dm3] 3L_11631186_SNP [dm6]	T	C	2.229e^-4	0.816	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3L	22354018	3L_22354018_SNP [dm3] 3L_22360918_SNP [dm6]	G	A	2.240e^-4	0.816	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7150937	X_7150937_SNP [dm3] X_7256904_SNP [dm6]	A	G	2.244e^-4	0.816	INTRON CR44357
X	4050712	X_4050712_SNP [dm3] X_4156679_SNP [dm6]	C	G	2.246e^-4	0.816	INTRON Fas2
2R	4075154	2R_4075154_SNP [dm3] 2R_8187649_SNP [dm6]	T	C	2.252e^-4	0.816	INTRON LRP1
3R	23505354	3R_23505354_SNP [dm3] 3R_27679632_SNP [dm6]	G	A	2.254e^-4	0.816	SYNONYMOUS_CODING CG12883 DOWNSTREAM CG5590 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	14767585	X_14767585_SNP [dm3] X_14873552_SNP [dm6]	G	T	2.257e^-4	0.816	INTRON Flo2
3R	15420636	3R_15420636_SNP [dm3] 3R_19594914_SNP [dm6]	T	G	2.258e^-4	0.816	UTR_3_PRIME Dys
3L	2974309	3L_2974309_SNP [dm3] 3L_2974309_SNP [dm6]	G	A	2.260e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4375089	X_4375089_SNP [dm3] X_4481056_SNP [dm6]	A	C	2.260e^-4	0.816	INTRON CR32773 & 1 other
X	12876135	X_12876135_SNP [dm3] X_12982102_SNP [dm6]	G	A	2.261e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6810138	X_6810138_SNP [dm3] X_6916105_SNP [dm6]	G	A	2.267e^-4	0.816	INTRON CG14431
3R	8580570	3R_8580570_DEL [dm3] 3R_12754848_DEL [dm6]	TA	T	2.269e^-4	0.816	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14900236	3L_14900236_SNP [dm3] 3L_14907136_SNP [dm6]	A	G	2.282e^-4	0.816	INTRON DCX-EMAP
X	16671973	X_16671973_SNP [dm3] X_16777940_SNP [dm6]	A	G	2.288e^-4	0.816	INTRON if
3L	11624303	3L_11624303_SNP [dm3] 3L_11631203_SNP [dm6]	A	T	2.301e^-4	0.816	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
3R	25166509	3R_25166509_SNP [dm3] 3R_29340787_SNP [dm6]	G	A	2.303e^-4	0.816	INTERGENIC
3R	16418685	3R_16418685_SNP [dm3] 3R_20592963_SNP [dm6]	T	C	2.304e^-4	0.816	UPSTREAM bon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16418718	3R_16418718_SNP [dm3] 3R_20592996_SNP [dm6]	T	A	2.304e^-4	0.816	UPSTREAM bon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19148356	3R_19148356_SNP [dm3] 3R_23322634_SNP [dm6]	C	A	2.306e^-4	0.816	INTRON pnt
3L	4512097	3L_4512097_SNP [dm3] 3L_4512097_SNP [dm6]	C	A	2.309e^-4	0.816	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26021134	3R_26021134_SNP [dm3] 3R_30195412_SNP [dm6]	G	C	2.321e^-4	0.816	DOWNSTREAM CG9743 INTRON CG15531
3R	25846962	3R_25846962_SNP [dm3] 3R_30021240_SNP [dm6]	G	C	2.324e^-4	0.816	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	6999693	3R_6999693_SNP [dm3] 3R_11173971_SNP [dm6]	C	T	2.326e^-4	0.816	SYNONYMOUS_CODING Ugt86Dj
3L	18630107	3L_18630107_SNP [dm3] 3L_18637007_SNP [dm6]	G	A	2.331e^-4	0.816	INTRON MYPT-75D
2R	12982766	2R_12982766_SNP [dm3] 2R_17095261_SNP [dm6]	A	T	2.340e^-4	0.816	INTRON GstS1	TF binding site mE1_TFBS_cad
3R	12313071	3R_12313071_SNP [dm3] 3R_16487349_SNP [dm6]	C	A	2.340e^-4	0.816	INTRON Cad89D
3R	26151252	3R_26151252_SNP [dm3] 3R_30325530_SNP [dm6]	A	T	2.341e^-4	0.816	INTRON hdc	TF binding site mE1_TFBS_chinmo
3R	23210357	3R_23210357_SNP [dm3] 3R_27384635_SNP [dm6]	G	C	2.345e^-4	0.816	INTRON side
2L	17402102	2L_17402102_SNP [dm3] 2L_17402102_SNP [dm6]	A	T	2.347e^-4	0.816	DOWNSTREAM CLIP-190 INTRON CLIP-190
2R	14574989	2R_14574989_SNP [dm3] 2R_18687484_SNP [dm6]	C	T	2.349e^-4	0.816	SYNONYMOUS_CODING CG42855 UPSTREAM CG44433 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	2704236	X_2704236_SNP [dm3] X_2810203_SNP [dm6]	C	T	2.357e^-4	0.816	SYNONYMOUS_CODING CG12498 INTRON kirre
3L	10310798	3L_10310798_SNP [dm3] 3L_10317698_SNP [dm6]	A	G	2.359e^-4	0.816	INTERGENIC
2R	9675685	2R_9675685_SNP [dm3] 2R_13788180_SNP [dm6]	A	G	2.368e^-4	0.816	DOWNSTREAM Cpr50Ca INTERGENIC
2R	16532257	2R_16532257_SNP [dm3] 2R_20644752_SNP [dm6]	C	T	2.375e^-4	0.816	UPSTREAM CG33785 & 1 other INTRON DMAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	8895726	2L_8895726_INS [dm3] 2L_8895726_INS [dm6]	T	TT	2.380e^-4	0.816	INTERGENIC
3R	8815104	3R_8815104_SNP [dm3] 3R_12989382_SNP [dm6]	C	A	2.383e^-4	0.816	NON_SYNONYMOUS_CODING CG31342 UPSTREAM CG14383	TF binding site mE1_TFBS_cad
3R	15290264	3R_15290264_DEL [dm3] 3R_19464542_DEL [dm6]	AA	A	2.386e^-4	0.816	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	15642642	3L_15642642_SNP [dm3] 3L_15649542_SNP [dm6]	A	G	2.391e^-4	0.816	UPSTREAM Eig71Eb DOWNSTREAM CG43083 INTRON Eig71Ea
3R	23206746	3R_23206746_SNP [dm3] 3R_27381024_SNP [dm6]	A	T	2.392e^-4	0.816	NON_SYNONYMOUS_CODING side UTR_3_PRIME side INTRON side
3R	23497586	3R_23497586_SNP [dm3] 3R_27671864_SNP [dm6]	T	C	2.393e^-4	0.816	INTRON unc80	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17374527	X_17374527_DEL [dm3] X_17480494_DEL [dm6]	GAGTGGGTGGCCC...	G	2.402e^-4	0.816	INTRON CG43658
2R	7635267	2R_7635267_SNP [dm3] 2R_11747762_SNP [dm6]	C	T	2.406e^-4	0.816	INTERGENIC
3R	23546625	3R_23546625_SNP [dm3] 3R_27720903_SNP [dm6]	G	A	2.409e^-4	0.816	INTERGENIC
3L	7700281	3L_7700281_SNP [dm3] 3L_7707181_SNP [dm6]	T	C	2.416e^-4	0.816	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
3L	13338592	3L_13338592_DEL [dm3] 3L_13345492_DEL [dm6]	TA	G	2.418e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14551635	2R_14551635_SNP [dm3] 2R_18664130_SNP [dm6]	A	T	2.418e^-4	0.816	DOWNSTREAM CG33136 INTERGENIC
3R	26878268	3R_26878268_SNP [dm3] 3R_31052546_SNP [dm6]	A	G	2.418e^-4	0.816	DOWNSTREAM l_3_03670 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2268062	X_2268062_SNP [dm3] X_2374029_SNP [dm6]	A	G	2.424e^-4	0.816	NON_SYNONYMOUS_CODING PsGEF SYNONYMOUS_CODING PsGEF	TF binding site mE1_TFBS_chinmo
3R	3891035	3R_3891035_SNP [dm3] 3R_8065313_SNP [dm6]	C	T	2.427e^-4	0.816	INTRON mAChR-B
3R	3516678	3R_3516678_SNP [dm3] 3R_7690956_SNP [dm6]	A	G	2.442e^-4	0.816	INTRON Nlg1
X	3734982	X_3734982_SNP [dm3] X_3840949_SNP [dm6]	G	T	2.445e^-4	0.816	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2L	18672314	2L_18672314_SNP [dm3] 2L_18672314_SNP [dm6]	A	C	2.448e^-4	0.816	INTRON CG43339
2R	9409068	2R_9409068_SNP [dm3] 2R_13521563_SNP [dm6]	C	T	2.450e^-4	0.816	UPSTREAM CG13331 INTRON Vmat
2R	15394027	2R_15394027_SNP [dm3] 2R_19506522_SNP [dm6]	G	C	2.452e^-4	0.816	UPSTREAM tRNA:H:56E INTERGENIC
3L	17109432	3L_17109432_SNP [dm3] 3L_17116332_SNP [dm6]	C	T	2.453e^-4	0.816	INTRON Rbp6
2L	19873961	2L_19873961_SNP [dm3] 2L_19873961_SNP [dm6]	T	G	2.458e^-4	0.816	INTRON sick
X	7535644	X_7535644_INS [dm3] X_7641611_INS [dm6]	G	GTGTG	2.460e^-4	0.816	INTRON ct
3R	24824527	3R_24824527_SNP [dm3] 3R_28998805_SNP [dm6]	T	C	2.461e^-4	0.816	INTRON wat
2L	9381988	2L_9381988_SNP [dm3] 2L_9381988_SNP [dm6]	A	G	2.466e^-4	0.816	INTRON Shawl
2L	6445696	2L_6445696_SNP [dm3] 2L_6445696_SNP [dm6]	C	T	2.471e^-4	0.816	SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad
3L	13338513	3L_13338513_SNP [dm3] 3L_13345413_SNP [dm6]	C	T	2.472e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13795626	2R_13795626_SNP [dm3] 2R_17908121_SNP [dm6]	T	A	2.473e^-4	0.816	INTRON Elk
3R	17575992	3R_17575992_SNP [dm3] 3R_21750270_SNP [dm6]	A	G	2.473e^-4	0.816	NON_SYNONYMOUS_CODING CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15142011	3R_15142011_SNP [dm3] 3R_19316289_SNP [dm6]	A	C	2.475e^-4	0.816	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12876161	X_12876161_SNP [dm3] X_12982128_SNP [dm6]	A	G	2.476e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15761906	2L_15761906_SNP [dm3] 2L_15761906_SNP [dm6]	C	T	2.501e^-4	0.816	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2L	5265862	2L_5265862_SNP [dm3] 2L_5265862_SNP [dm6]	T	C	2.501e^-4	0.816	UTR_3_PRIME Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	3868804	3R_3868804_SNP [dm3] 3R_8043082_SNP [dm6]	C	A	2.504e^-4	0.816	INTRON CG43060	transposable element FlyBase
2R	17890777	2R_17890777_SNP [dm3] 2R_22003272_SNP [dm6]	G	A	2.509e^-4	0.816	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8569315	3R_8569315_SNP [dm3] 3R_12743593_SNP [dm6]	T	C	2.512e^-4	0.816	SYNONYMOUS_CODING CG5999
3R	15130465	3R_15130465_SNP [dm3] 3R_19304743_SNP [dm6]	C	T	2.513e^-4	0.816	UTR_3_PRIME Dl
3L	5625070	3L_5625070_SNP [dm3] 3L_5631970_SNP [dm6]	T	A	2.515e^-4	0.816	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
2L	7198807	2L_7198807_SNP [dm3] 2L_7198807_SNP [dm6]	C	T	2.518e^-4	0.816	INTRON CG4502
2L	10713181	2L_10713181_INS [dm3] 2L_10713181_INS [dm6]	T	TG	2.522e^-4	0.816	INTERGENIC
X	17664526	X_17664526_SNP [dm3] X_17770493_SNP [dm6]	A	G	2.533e^-4	0.816	INTRON unc-4
X	17729160	X_17729160_INS [dm3] X_17835127_INS [dm6]	T	TT	2.536e^-4	0.816	INTRON CG6398
3R	3895159	3R_3895159_DEL [dm3] 3R_8069437_DEL [dm6]	ATGTCAG	A	2.536e^-4	0.816	INTRON mAChR-B
X	17663829	X_17663829_SNP [dm3] X_17769796_SNP [dm6]	C	A	2.537e^-4	0.816	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2L	9380726	2L_9380726_SNP [dm3] 2L_9380726_SNP [dm6]	A	T	2.542e^-4	0.816	INTRON Shawl
3L	2875573	3L_2875573_SNP [dm3] 3L_2875573_SNP [dm6]	G	A	2.542e^-4	0.816	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1047383	3L_1047383_SNP [dm3] 3L_1047383_SNP [dm6]	T	C	2.550e^-4	0.816	INTRON bab1
3L	14458179	3L_14458179_DEL [dm3] 3L_14465079_DEL [dm6]	CTTC	C	2.552e^-4	0.816	INTRON bbg	TF binding site mE1_TFBS_HSA
3R	16858938	3R_16858938_SNP [dm3] 3R_21033216_SNP [dm6]	T	C	2.559e^-4	0.816	SYNONYMOUS_CODING Dhc93AB
3R	21258060	3R_21258060_SNP [dm3] 3R_25432338_SNP [dm6]	C	A	2.573e^-4	0.816	INTRON Fur1
3R	16007340	3R_16007340_SNP [dm3] 3R_20181618_SNP [dm6]	T	C	2.573e^-4	0.816	INTERGENIC
3L	13449726	3L_13449726_SNP [dm3] 3L_13456626_SNP [dm6]	T	G	2.578e^-4	0.816	NON_SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4132347	X_4132347_SNP [dm3] X_4238314_SNP [dm6]	T	A	2.580e^-4	0.816	INTERGENIC
X	7346778	X_7346778_SNP [dm3] X_7452745_SNP [dm6]	C	T	2.581e^-4	0.816	NON_SYNONYMOUS_CODING CG43198 DOWNSTREAM CR43199 & 1 other
3R	19562656	3R_19562656_SNP [dm3] 3R_23736934_SNP [dm6]	G	T	2.583e^-4	0.816	INTRON Hmgcr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11624272	3L_11624272_DEL [dm3] 3L_11631172_DEL [dm6]	TTTAGTT	T	2.585e^-4	0.816	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
2L	10334913	2L_10334913_SNP [dm3] 2L_10334913_SNP [dm6]	G	T	2.588e^-4	0.816	INTRON GATAd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20315033	2L_20315033_SNP [dm3] 2L_20315033_SNP [dm6]	T	G	2.592e^-4	0.816	DOWNSTREAM CR43606 INTRON spir	TF binding site mE1_TFBS_cad
3R	22406480	3R_22406480_SNP [dm3] 3R_26580758_SNP [dm6]	A	G	2.594e^-4	0.816	SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22370186	3L_22370186_SNP [dm3] 3L_22377086_SNP [dm6]	C	T	2.599e^-4	0.816	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	19378416	3R_19378416_SNP [dm3] 3R_23552694_SNP [dm6]	G	A	2.601e^-4	0.816	INTERGENIC
X	11566012	X_11566012_DEL [dm3] X_11671979_DEL [dm6]	CTAATTATCCAAC...	C	2.601e^-4	0.816	INTRON Ptp10D
X	12876152	X_12876152_SNP [dm3] X_12982119_SNP [dm6]	T	G	2.601e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6129363	3L_6129363_SNP [dm3] 3L_6136263_SNP [dm6]	A	T	2.603e^-4	0.816	UTR_3_PRIME Lcp65Af UPSTREAM Lcp65Ag1
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	2.607e^-4	0.816	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
2L	4375075	2L_4375075_SNP [dm3] 2L_4375075_SNP [dm6]	G	A	2.609e^-4	0.816	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4998367	X_4998367_SNP [dm3] X_5104334_SNP [dm6]	C	T	2.617e^-4	0.816	INTRON rg & 1 other
3R	7772157	3R_7772157_SNP [dm3] 3R_11946435_SNP [dm6]	A	G	2.618e^-4	0.816	INTRON Cad87A
3R	14015204	3R_14015204_SNP [dm3] 3R_18189482_SNP [dm6]	G	T	2.630e^-4	0.816	SYNONYMOUS_CODING MED17 UPSTREAM CG12321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9086201	2L_9086201_SNP [dm3] 2L_9086201_SNP [dm6]	A	T	2.630e^-4	0.816	INTRON Toll-4
2R	17890897	2R_17890897_SNP [dm3] 2R_22003392_SNP [dm6]	T	C	2.641e^-4	0.816	INTRON CG34370	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19169693	X_19169693_INS [dm3] X_19275660_INS [dm6]	T	TGTT	2.642e^-4	0.816	UPSTREAM CG32537 INTRON CG32537 & 1 other
2L	10713162	2L_10713162_SNP [dm3] 2L_10713162_SNP [dm6]	A	G	2.644e^-4	0.816	INTERGENIC
3R	22805802	3R_22805802_DEL [dm3] 3R_26980080_DEL [dm6]	CATTTTCATTAGTT...	A	2.654e^-4	0.816	UPSTREAM CG14253 INTRON CG14253	TF binding site mE1_TFBS_Trl
2R	7151302	2R_7151302_DEL [dm3] 2R_11263797_DEL [dm6]	AG	A	2.661e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_ttk
2R	16173650	2R_16173650_SNP [dm3] 2R_20286145_SNP [dm6]	T	C	2.664e^-4	0.816	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
X	3999382	X_3999382_SNP [dm3] X_4105349_SNP [dm6]	G	T	2.665e^-4	0.816	SYNONYMOUS_CODING brn UPSTREAM cib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18586932	2L_18586932_SNP [dm3] 2L_18586932_SNP [dm6]	C	T	2.666e^-4	0.816	INTRON Pde11
X	11271074	X_11271074_SNP [dm3] X_11377041_SNP [dm6]	C	T	2.674e^-4	0.816	INTRON dlg1
3L	4421331	3L_4421331_SNP [dm3] 3L_4421331_SNP [dm6]	G	A	2.678e^-4	0.816	UPSTREAM CG15020 DOWNSTREAM DOR INTERGENIC
3L	13338601	3L_13338601_SNP [dm3] 3L_13345501_SNP [dm6]	A	C	2.679e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8246539	2L_8246539_SNP [dm3] 2L_8246539_SNP [dm6]	G	T	2.681e^-4	0.816	INTRON CG8086
3R	12926062	3R_12926062_SNP [dm3] 3R_17100340_SNP [dm6]	G	A	2.683e^-4	0.816	INTRON cher
3R	16420763	3R_16420763_SNP [dm3] 3R_20595041_SNP [dm6]	A	G	2.684e^-4	0.816	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18784309	2L_18784309_SNP [dm3] 2L_18784309_SNP [dm6]	G	T	2.688e^-4	0.816	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	3891178	3R_3891178_SNP [dm3] 3R_8065456_SNP [dm6]	G	C	2.690e^-4	0.816	INTRON mAChR-B
3R	22246197	3R_22246197_SNP [dm3] 3R_26420475_SNP [dm6]	C	T	2.691e^-4	0.816	INTERGENIC
X	3066081	X_3066081_SNP [dm3] X_3172048_SNP [dm6]	G	A	2.692e^-4	0.816	UTR_3_PRIME N DOWNSTREAM CG18508 & 1 other
3L	17107575	3L_17107575_SNP [dm3] 3L_17114475_SNP [dm6]	T	C	2.699e^-4	0.816	INTRON Rbp6
2R	16909203	2R_16909203_SNP [dm3] 2R_21021698_SNP [dm6]	A	T	2.699e^-4	0.816	INTRON RIC-3
3L	8418035	3L_8418035_SNP [dm3] 3L_8424935_SNP [dm6]	G	C	2.702e^-4	0.816	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	22456658	3L_22456658_SNP [dm3] 3L_22463558_SNP [dm6]	C	A	2.703e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10670450	2R_10670450_SNP [dm3] 2R_14782945_SNP [dm6]	C	A	2.709e^-4	0.816	INTRON kn
2R	17297686	2R_17297686_SNP [dm3] 2R_21410181_SNP [dm6]	C	A	2.710e^-4	0.816	INTRON Sdc
X	11271049	X_11271049_SNP [dm3] X_11377016_SNP [dm6]	C	A	2.711e^-4	0.816	INTRON dlg1
2R	9310315	2R_9310315_SNP [dm3] 2R_13422810_SNP [dm6]	A	G	2.714e^-4	0.816	DOWNSTREAM CG30060 INTRON CG42321
3L	12207704	3L_12207704_SNP [dm3] 3L_12214604_SNP [dm6]	A	G	2.715e^-4	0.816	UPSTREAM app INTRON app
3R	25550232	3R_25550232_SNP [dm3] 3R_29724510_SNP [dm6]	G	A	2.716e^-4	0.816	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	15251112	2R_15251112_SNP [dm3] 2R_19363607_SNP [dm6]	C	T	2.722e^-4	0.816	UPSTREAM CG10051 DOWNSTREAM CG11961 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3519449	2L_3519449_SNP [dm3] 2L_3519449_SNP [dm6]	T	G	2.732e^-4	0.816	SYNONYMOUS_CODING CG3213 UPSTREAM CG8851	TF binding site mE1_TFBS_cad
3R	13121769	3R_13121769_SNP [dm3] 3R_17296047_SNP [dm6]	C	G	2.736e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26924576	3R_26924576_SNP [dm3] 3R_31098854_SNP [dm6]	A	G	2.739e^-4	0.816	DOWNSTREAM CG15553 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26929383	3R_26929383_INS [dm3] 3R_31103661_INS [dm6]	A	AATATATCTCTTCATTTTAA...	2.741e^-4	0.816	INTERGENIC
2L	14057241	2L_14057241_SNP [dm3] 2L_14057241_SNP [dm6]	T	C	2.752e^-4	0.816	INTRON nAChRalpha5
3L	7153570	3L_7153570_SNP [dm3] 3L_7160470_SNP [dm6]	C	T	2.753e^-4	0.816	UTR_3_PRIME Dscam2
2R	13394169	2R_13394169_SNP [dm3] 2R_17506664_SNP [dm6]	T	C	2.754e^-4	0.816	UTR_3_PRIME CG43164 INTRON CG43164
X	19118631	X_19118631_INS [dm3] X_19224598_INS [dm6]	G	GT	2.755e^-4	0.816	INTRON CG7884	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2409653	3L_2409653_SNP [dm3] 3L_2409653_SNP [dm6]	C	T	2.764e^-4	0.816	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	9402238	2R_9402238_INS [dm3] 2R_13514733_INS [dm6]	T	TTG	2.766e^-4	0.816	UTR_3_PRIME Vmat UPSTREAM CG13330
X	16893015	X_16893015_INS [dm3] X_16998982_INS [dm6]	T	TTT	2.768e^-4	0.816	INTRON CG45002
2L	7186551	2L_7186551_SNP [dm3] 2L_7186551_SNP [dm6]	T	C	2.768e^-4	0.816	NON_SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15897440	2R_15897440_SNP [dm3] 2R_20009935_SNP [dm6]	A	G	2.769e^-4	0.816	INTERGENIC
3R	8612466	3R_8612466_SNP [dm3] 3R_12786744_SNP [dm6]	T	G	2.770e^-4	0.816	INTERGENIC
3R	15519862	3R_15519862_SNP [dm3] 3R_19694140_SNP [dm6]	G	A	2.772e^-4	0.816	INTRON Naam
2R	12458834	2R_12458834_INS [dm3] 2R_16571329_INS [dm6]	A	ATA	2.773e^-4	0.816	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4512095	3L_4512095_SNP [dm3] 3L_4512095_SNP [dm6]	A	G	2.776e^-4	0.816	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6469628	3L_6469628_SNP [dm3] 3L_6476528_SNP [dm6]	G	T	2.778e^-4	0.816	INTRON CG42747
3R	17657853	3R_17657853_SNP [dm3] 3R_21832131_SNP [dm6]	C	T	2.805e^-4	0.816	UPSTREAM Gr93a INTERGENIC
2R	4309627	2R_4309627_SNP [dm3] 2R_8422122_SNP [dm6]	T	C	2.813e^-4	0.816	INTRON CSN7
2L	8530921	2L_8530921_SNP [dm3] 2L_8530921_SNP [dm6]	T	A	2.820e^-4	0.816	INTRON CG17834
2L	5265889	2L_5265889_SNP [dm3] 2L_5265889_SNP [dm6]	A	T	2.821e^-4	0.816	UTR_3_PRIME Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	18847600	X_18847600_SNP [dm3] X_18953567_SNP [dm6]	A	G	2.824e^-4	0.816	INTRON CG43759
3L	4512104	3L_4512104_SNP [dm3] 3L_4512104_SNP [dm6]	T	A	2.824e^-4	0.816	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15721072	3R_15721072_SNP [dm3] 3R_19895350_SNP [dm6]	A	T	2.824e^-4	0.816	INTRON CG4733
2R	6290751	2R_6290751_SNP [dm3] 2R_10403246_SNP [dm6]	T	C	2.825e^-4	0.816	INTRON CG42732
3R	26899496	3R_26899496_SNP [dm3] 3R_31073774_SNP [dm6]	A	G	2.826e^-4	0.816	INTRON Sox100B
3L	2575377	3L_2575377_SNP [dm3] 3L_2575377_SNP [dm6]	T	A	2.836e^-4	0.816	INTRON msn
X	14794690	X_14794690_SNP [dm3] X_14900657_SNP [dm6]	C	A	2.843e^-4	0.816	INTRON Flo2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3138349	3R_3138349_SNP [dm3] 3R_7312627_SNP [dm6]	C	A	2.844e^-4	0.816	EXON CR44334	TF binding site BDTNP1_TFBS_dl
2L	13726856	2L_13726856_SNP [dm3] 2L_13726856_SNP [dm6]	A	C	2.845e^-4	0.816	INTERGENIC
3L	8770767	3L_8770767_SNP [dm3] 3L_8777667_SNP [dm6]	C	A	2.849e^-4	0.816	INTRON Fhos
2L	9343622	2L_9343622_SNP [dm3] 2L_9343622_SNP [dm6]	C	G	2.850e^-4	0.816	NON_SYNONYMOUS_CODING CG3748
3L	7430629	3L_7430629_SNP [dm3] 3L_7437529_SNP [dm6]	C	T	2.853e^-4	0.816	UPSTREAM CG14835 DOWNSTREAM sphinx1 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16710638	X_16710638_SNP [dm3] X_16816605_SNP [dm6]	C	T	2.853e^-4	0.816	UPSTREAM CG4829 & 1 other INTRON CG4829
X	21862019	X_21862019_SNP [dm3] X_22460183_SNP [dm6]	G	T	2.853e^-4	0.816	INTRON CG14619
2L	4172262	2L_4172262_DEL [dm3] 2L_4172262_DEL [dm6]	GGCAGCAG	G	2.855e^-4	0.816	INTERGENIC
2R	9254307	2R_9254307_SNP [dm3] 2R_13366802_SNP [dm6]	A	G	2.860e^-4	0.816	INTERGENIC
X	6542934	X_6542934_SNP [dm3] X_6648901_SNP [dm6]	C	T	2.866e^-4	0.816	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
3R	5025564	3R_5025564_SNP [dm3] 3R_9199842_SNP [dm6]	T	A	2.867e^-4	0.816	INTRON pum
3L	15865251	3L_15865251_DEL [dm3] 3L_15872151_DEL [dm6]	AAAACTGAAGAATA...	A	2.867e^-4	0.816	INTRON pHCl
X	20315904	X_20315904_SNP [dm3] X_20444877_SNP [dm6]	A	C	2.867e^-4	0.816	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18418020	3L_18418020_SNP [dm3] 3L_18424920_SNP [dm6]	C	T	2.867e^-4	0.816	INTERGENIC
2R	10148420	2R_10148420_SNP [dm3] 2R_14260915_SNP [dm6]	A	G	2.868e^-4	0.816	UTR_3_PRIME beta4GalNAcTA DOWNSTREAM CG8547
2L	2647001	2L_2647001_SNP [dm3] 2L_2647001_SNP [dm6]	A	T	2.871e^-4	0.816	SYNONYMOUS_CODING CG9962 UPSTREAM CG43851 DOWNSTREAM CR43852	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15365140	3L_15365140_SNP [dm3] 3L_15372040_SNP [dm6]	T	A	2.871e^-4	0.816	INTERGENIC
3L	10420853	3L_10420853_SNP [dm3] 3L_10427753_SNP [dm6]	C	T	2.885e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7076791	3L_7076791_SNP [dm3] 3L_7083691_SNP [dm6]	T	C	2.887e^-4	0.816	INTERGENIC
3R	12313077	3R_12313077_SNP [dm3] 3R_16487355_SNP [dm6]	C	T	2.893e^-4	0.816	INTRON Cad89D
3L	12278230	3L_12278230_SNP [dm3] 3L_12285130_SNP [dm6]	A	T	2.894e^-4	0.816	INTERGENIC
X	20871739	X_20871739_SNP [dm3] X_21000712_SNP [dm6]	A	T	2.899e^-4	0.816	INTERGENIC
X	11271031	X_11271031_SNP [dm3] X_11376998_SNP [dm6]	T	A	2.900e^-4	0.816	INTRON dlg1
X	16160014	X_16160014_SNP [dm3] X_16265981_SNP [dm6]	G	A	2.904e^-4	0.816	INTRON CG12507
X	16160000	X_16160000_SNP [dm3] X_16265967_SNP [dm6]	A	T	2.906e^-4	0.816	INTRON CG12507
3R	15513812	3R_15513812_SNP [dm3] 3R_19688090_SNP [dm6]	T	C	2.910e^-4	0.816	INTRON Naam
X	13156981	X_13156981_SNP [dm3] X_13262948_SNP [dm6]	T	A	2.911e^-4	0.816	UTR_3_PRIME HDAC4 DOWNSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26899515	3R_26899515_SNP [dm3] 3R_31073793_SNP [dm6]	T	G	2.911e^-4	0.816	INTRON Sox100B
3R	3784605	3R_3784605_SNP [dm3] 3R_7958883_SNP [dm6]	C	T	2.919e^-4	0.816	INTRON dsx
X	16674846	X_16674846_SNP [dm3] X_16780813_SNP [dm6]	C	T	2.922e^-4	0.816	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11921150	3L_11921150_SNP [dm3] 3L_11928050_SNP [dm6]	T	C	2.922e^-4	0.816	INTRON CG44837 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10554891	2R_10554891_DEL [dm3] 2R_14667386_DEL [dm6]	CTGTTAAC	C	2.929e^-4	0.816	UPSTREAM CG12860 & 1 other INTERGENIC
3L	2974305	3L_2974305_SNP [dm3] 3L_2974305_SNP [dm6]	G	T	2.939e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10560509	3R_10560509_SNP [dm3] 3R_14734787_SNP [dm6]	T	A	2.944e^-4	0.816	INTRON eff	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	15014728	3L_15014728_SNP [dm3] 3L_15021628_SNP [dm6]	C	A	2.945e^-4	0.816	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16160002	X_16160002_DEL [dm3] X_16265969_DEL [dm6]	AA	A	2.950e^-4	0.816	INTRON CG12507
3L	18140480	3L_18140480_INS [dm3] 3L_18147380_INS [dm6]	C	CATC	2.951e^-4	0.816	INTERGENIC
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	2.951e^-4	0.816	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	19256692	2R_19256692_SNP [dm3] 2R_23369169_SNP [dm6]	G	A	2.951e^-4	0.816	NON_SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
X	21016847	X_21016847_SNP [dm3] X_21145820_SNP [dm6]	A	T	2.957e^-4	0.816	DOWNSTREAM CG45154 INTERGENIC
3L	4512106	3L_4512106_SNP [dm3] 3L_4512106_SNP [dm6]	T	A	2.957e^-4	0.816	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7150950	X_7150950_SNP [dm3] X_7256917_SNP [dm6]	T	C	2.959e^-4	0.816	INTRON CR44357
3R	19569471	3R_19569471_SNP [dm3] 3R_23743749_SNP [dm6]	A	T	2.973e^-4	0.816	INTRON Hmgcr
3L	16540921	3L_16540921_SNP [dm3] 3L_16547821_SNP [dm6]	C	G	2.984e^-4	0.816	INTERGENIC
X	6810133	X_6810133_DEL [dm3] X_6916100_DEL [dm6]	CA	C	2.986e^-4	0.816	INTRON CG14431
3L	21904180	3L_21904180_SNP [dm3] 3L_21911080_SNP [dm6]	C	G	2.987e^-4	0.816	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5902539	3L_5902539_SNP [dm3] 3L_5909439_SNP [dm6]	A	G	2.990e^-4	0.816	SYNONYMOUS_CODING CG13288
3R	8562412	3R_8562412_SNP [dm3] 3R_12736690_SNP [dm6]	A	C	2.992e^-4	0.816	INTERGENIC
2R	8579644	2R_8579644_SNP [dm3] 2R_12692139_SNP [dm6]	C	T	2.992e^-4	0.816	NON_SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	20265849	2R_20265849_SNP [dm3] 2R_24378326_SNP [dm6]	A	G	3.001e^-4	0.816	NON_SYNONYMOUS_CODING CG13578 DOWNSTREAM mAChR-A	TF binding site mE1_TFBS_chinmo
3R	17803776	3R_17803776_SNP [dm3] 3R_21978054_SNP [dm6]	C	G	3.003e^-4	0.816	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl
3L	3282976	3L_3282976_DEL [dm3] 3L_3282976_DEL [dm6]	CCC	C	3.009e^-4	0.816	INTRON CG12017
3R	3769163	3R_3769163_DEL [dm3] 3R_7943441_DEL [dm6]	CAA	G	3.013e^-4	0.816	INTRON dsx
3R	10299938	3R_10299938_SNP [dm3] 3R_14474216_SNP [dm6]	G	A	3.013e^-4	0.816	INTRON cv-c	TF binding site mE1_TFBS_cad
3R	26920315	3R_26920315_SNP [dm3] 3R_31094593_SNP [dm6]	G	A	3.015e^-4	0.816	INTRON CG11317
X	12949139	X_12949139_SNP [dm3] X_13055106_SNP [dm6]	T	A	3.020e^-4	0.816	DOWNSTREAM CR44840 INTRON rad & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22896425	3R_22896425_SNP [dm3] 3R_27070703_SNP [dm6]	G	A	3.022e^-4	0.816	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4203012	2L_4203012_SNP [dm3] 2L_4203012_SNP [dm6]	G	T	3.027e^-4	0.816	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
3L	13338569	3L_13338569_SNP [dm3] 3L_13345469_SNP [dm6]	G	A	3.032e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16377886	2L_16377886_SNP [dm3] 2L_16377886_SNP [dm6]	C	T	3.035e^-4	0.816	INTERGENIC
3L	7203517	3L_7203517_SNP [dm3] 3L_7210417_SNP [dm6]	C	T	3.037e^-4	0.816	INTERGENIC
3L	3581268	3L_3581268_SNP [dm3] 3L_3581268_SNP [dm6]	C	T	3.054e^-4	0.816	INTRON Eip63E
3L	3581269	3L_3581269_SNP [dm3] 3L_3581269_SNP [dm6]	T	C	3.054e^-4	0.816	INTRON Eip63E
3L	2529014	3L_2529014_SNP [dm3] 3L_2529014_SNP [dm6]	G	C	3.055e^-4	0.816	INTRON Spn
3R	16498262	3R_16498262_SNP [dm3] 3R_20672540_SNP [dm6]	C	T	3.069e^-4	0.816	UTR_3_PRIME Cpr92F
X	17132558	X_17132558_SNP [dm3] X_17238525_SNP [dm6]	A	G	3.083e^-4	0.816	INTRON f
X	16160024	X_16160024_SNP [dm3] X_16265991_SNP [dm6]	C	T	3.090e^-4	0.816	INTRON CG12507
3R	15515125	3R_15515125_SNP [dm3] 3R_19689403_SNP [dm6]	G	T	3.099e^-4	0.816	INTRON Naam
X	3933656	X_3933656_DEL [dm3] X_4039623_DEL [dm6]	CC	C	3.103e^-4	0.816	INTERGENIC
2R	9694917	2R_9694917_SNP [dm3] 2R_13807412_SNP [dm6]	A	G	3.104e^-4	0.816	INTRON stj
2R	20727638	2R_20727638_SNP [dm3] 2R_24840115_SNP [dm6]	C	T	3.130e^-4	0.816	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15251450	2R_15251450_SNP [dm3] 2R_19363945_SNP [dm6]	G	T	3.133e^-4	0.816	DOWNSTREAM CG11961 INTRON CG10051	TF binding site mE1_TFBS_cad
3R	16886874	3R_16886874_SNP [dm3] 3R_21061152_SNP [dm6]	C	G	3.135e^-4	0.816	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22603585	3R_22603585_SNP [dm3] 3R_26777863_SNP [dm6]	G	T	3.137e^-4	0.816	INTERGENIC
3R	24083637	3R_24083637_SNP [dm3] 3R_28257915_SNP [dm6]	T	A	3.140e^-4	0.816	INTERGENIC
2L	9346013	2L_9346013_SNP [dm3] 2L_9346013_SNP [dm6]	T	C	3.157e^-4	0.816	INTERGENIC
2L	4927082	2L_4927082_SNP [dm3] 2L_4927082_SNP [dm6]	G	T	3.157e^-4	0.816	INTRON hoe1
2R	7151281	2R_7151281_SNP [dm3] 2R_11263776_SNP [dm6]	G	A	3.159e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_ttk
2L	9374102	2L_9374102_SNP [dm3] 2L_9374102_SNP [dm6]	G	A	3.167e^-4	0.816	DOWNSTREAM CR43865 INTRON Shawl
3L	16163764	3L_16163764_SNP [dm3] 3L_16170664_SNP [dm6]	A	C	3.171e^-4	0.816	UPSTREAM CG33796 DOWNSTREAM CG33795 INTERGENIC
3R	7159039	3R_7159039_SNP [dm3] 3R_11333317_SNP [dm6]	C	T	3.174e^-4	0.816	START_GAINED pros UTR_5_PRIME pros INTRON pros
3L	15866913	3L_15866913_SNP [dm3] 3L_15873813_SNP [dm6]	T	C	3.174e^-4	0.816	INTRON pHCl
2R	13114996	2R_13114996_SNP [dm3] 2R_17227491_SNP [dm6]	A	T	3.187e^-4	0.816	INTRON mbl
2R	8439063	2R_8439063_SNP [dm3] 2R_12551558_SNP [dm6]	A	G	3.195e^-4	0.816	INTRON fra
2L	15787710	2L_15787710_SNP [dm3] 2L_15787710_SNP [dm6]	C	T	3.195e^-4	0.816	SYNONYMOUS_CODING CG18109
3R	3960510	3R_3960510_SNP [dm3] 3R_8134788_SNP [dm6]	A	T	3.196e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7336665	2L_7336665_DEL [dm3] 2L_7336665_DEL [dm6]	TGCTTCAT	T	3.202e^-4	0.816	INTRON Wnt6
3R	3753051	3R_3753051_SNP [dm3] 3R_7927329_SNP [dm6]	A	G	3.223e^-4	0.816	INTRON dsx
3L	15019968	3L_15019968_SNP [dm3] 3L_15026868_SNP [dm6]	G	T	3.226e^-4	0.816	INTRON Sytbeta
X	20460966	X_20460966_SNP [dm3] X_20589939_SNP [dm6]	A	G	3.226e^-4	0.816	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	15101440	2R_15101440_SNP [dm3] 2R_19213935_SNP [dm6]	C	T	3.228e^-4	0.816	INTRON hppy
2L	6787852	2L_6787852_INS [dm3] 2L_6787852_INS [dm6]	C	CC	3.232e^-4	0.816	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15251686	2R_15251686_DEL [dm3] 2R_19364181_DEL [dm6]	TT	T	3.232e^-4	0.816	INTRON CG10051	TF binding site mE1_TFBS_cad
X	14688098	X_14688098_SNP [dm3] X_14794065_SNP [dm6]	T	C	3.237e^-4	0.816	SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9850037	3L_9850037_SNP [dm3] 3L_9856937_SNP [dm6]	C	T	3.247e^-4	0.816	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4864280	3L_4864280_SNP [dm3] 3L_4864280_SNP [dm6]	G	A	3.249e^-4	0.816	NON_SYNONYMOUS_CODING CG17150 INTRON CG17150
3R	18500597	3R_18500597_SNP [dm3] 3R_22674875_SNP [dm6]	G	T	3.249e^-4	0.816	INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Trl
2R	11964150	2R_11964150_SNP [dm3] 2R_16076645_SNP [dm6]	C	T	3.252e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26899514	3R_26899514_SNP [dm3] 3R_31073792_SNP [dm6]	G	C	3.261e^-4	0.816	INTRON Sox100B
3R	26920381	3R_26920381_SNP [dm3] 3R_31094659_SNP [dm6]	C	A	3.269e^-4	0.816	INTRON CG11317
X	10263690	X_10263690_SNP [dm3] X_10369657_SNP [dm6]	G	A	3.269e^-4	0.816	INTRON CG17841
X	21874463	X_21874463_SNP [dm3] X_22472627_SNP [dm6]	G	A	3.278e^-4	0.816	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18000205	3L_18000205_SNP [dm3] 3L_18007105_SNP [dm6]	G	C	3.285e^-4	0.816	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13129066	X_13129066_SNP [dm3] X_13235033_SNP [dm6]	A	T	3.293e^-4	0.816	DOWNSTREAM CG32639 INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	22380038	3R_22380038_DEL [dm3] 3R_26554316_DEL [dm6]	AAACAA	A	3.295e^-4	0.816	INTRON scrib
2R	13227110	2R_13227110_SNP [dm3] 2R_17339605_SNP [dm6]	G	T	3.298e^-4	0.816	INTRON mbl
3R	16716917	3R_16716917_SNP [dm3] 3R_20891195_SNP [dm6]	G	T	3.299e^-4	0.816	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	16420588	3R_16420588_SNP [dm3] 3R_20594866_SNP [dm6]	A	T	3.300e^-4	0.816	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	22458603	3L_22458603_SNP [dm3] 3L_22465503_SNP [dm6]	C	A	3.304e^-4	0.816	UPSTREAM CG11438 INTERGENIC
2L	5509301	2L_5509301_SNP [dm3] 2L_5509301_SNP [dm6]	C	T	3.308e^-4	0.816	INTERGENIC
3R	9823145	3R_9823145_SNP [dm3] 3R_13997423_SNP [dm6]	C	T	3.316e^-4	0.816	INTRON rdx
3L	13338583	3L_13338583_SNP [dm3] 3L_13345483_SNP [dm6]	G	C	3.319e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9496639	3L_9496639_SNP [dm3] 3L_9503539_SNP [dm6]	A	G	3.325e^-4	0.816	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13338509	3L_13338509_INS [dm3] 3L_13345409_INS [dm6]	T	TA	3.327e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17805385	3R_17805385_SNP [dm3] 3R_21979663_SNP [dm6]	A	C	3.328e^-4	0.816	INTRON Eip93F
3R	10092221	3R_10092221_SNP [dm3] 3R_14266499_SNP [dm6]	C	A	3.339e^-4	0.816	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6745448	2R_6745448_SNP [dm3] 2R_10857943_SNP [dm6]	A	G	3.340e^-4	0.816	INTRON CG30015
2R	12982775	2R_12982775_SNP [dm3] 2R_17095270_SNP [dm6]	T	A	3.346e^-4	0.816	INTRON GstS1	TF binding site mE1_TFBS_cad
2R	16173632	2R_16173632_SNP [dm3] 2R_20286127_SNP [dm6]	T	C	3.347e^-4	0.816	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	15138181	2R_15138181_SNP [dm3] 2R_19250676_SNP [dm6]	C	T	3.348e^-4	0.816	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454
2R	14477980	2R_14477980_SNP [dm3] 2R_18590475_SNP [dm6]	C	A	3.355e^-4	0.816	INTRON GEFmeso
3L	14434470	3L_14434470_DEL [dm3] 3L_14441370_DEL [dm6]	TC	T	3.359e^-4	0.816	INTRON bbg
3R	26216472	3R_26216472_SNP [dm3] 3R_30390750_SNP [dm6]	T	G	3.361e^-4	0.816	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3R	22084896	3R_22084896_SNP [dm3] 3R_26259174_SNP [dm6]	A	T	3.362e^-4	0.816	UTR_5_PRIME Ald UPSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25963729	3R_25963729_SNP [dm3] 3R_30138007_SNP [dm6]	C	A	3.365e^-4	0.816	INTRON AdoR	TF binding site mE1_TFBS_cad
2L	3964757	2L_3964757_SNP [dm3] 2L_3964757_SNP [dm6]	C	A	3.367e^-4	0.816	INTRON fred
3R	25909607	3R_25909607_SNP [dm3] 3R_30083885_SNP [dm6]	C	G	3.375e^-4	0.816	INTRON sima	TF binding site mE1_TFBS_Trl
3R	16420415	3R_16420415_SNP [dm3] 3R_20594693_SNP [dm6]	A	C	3.379e^-4	0.816	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	15200836	2L_15200836_SNP [dm3] 2L_15200836_SNP [dm6]	G	T	3.381e^-4	0.816	UPSTREAM CG4168 DOWNSTREAM Sfp35C INTERGENIC
2L	15197590	2L_15197590_SNP [dm3] 2L_15197590_SNP [dm6]	T	C	3.382e^-4	0.816	INTRON CG4168
3R	20206445	3R_20206445_SNP [dm3] 3R_24380723_SNP [dm6]	A	T	3.396e^-4	0.816	INTERGENIC
X	16159986	X_16159986_INS [dm3] X_16265953_INS [dm6]	T	TAT	3.403e^-4	0.816	INTRON CG12507
X	17622165	X_17622165_SNP [dm3] X_17728132_SNP [dm6]	G	A	3.410e^-4	0.816	INTRON CG42684
2R	1397074	2R_1397074_DEL [dm3] 2R_5509569_DEL [dm6]	ACCCCGTTTCGGGGTTTGTA...	A	3.414e^-4	0.816	INTRON CG30438	transposable element FlyBase
X	13127204	X_13127204_SNP [dm3] X_13233171_SNP [dm6]	C	G	3.419e^-4	0.816	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11659305	2L_11659305_SNP [dm3] 2L_11659305_SNP [dm6]	G	A	3.422e^-4	0.816	DOWNSTREAM CR44497 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8418022	3L_8418022_SNP [dm3] 3L_8424922_SNP [dm6]	A	T	3.424e^-4	0.816	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2974306	3L_2974306_SNP [dm3] 3L_2974306_SNP [dm6]	T	C	3.425e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3159766	3L_3159766_SNP [dm3] 3L_3159766_SNP [dm6]	T	C	3.425e^-4	0.816	UPSTREAM pfk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	18530335	3R_18530335_SNP [dm3] 3R_22704613_SNP [dm6]	G	T	3.427e^-4	0.816	SYNONYMOUS_CODING CG13842 DOWNSTREAM CG6972
3R	26868439	3R_26868439_SNP [dm3] 3R_31042717_SNP [dm6]	T	A	3.427e^-4	0.816	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
3R	15518665	3R_15518665_SNP [dm3] 3R_19692943_SNP [dm6]	C	T	3.429e^-4	0.816	INTRON Naam
3L	12102830	3L_12102830_DEL [dm3] 3L_12109730_DEL [dm6]	ATA	A	3.433e^-4	0.816	INTERGENIC
3L	7246845	3L_7246845_SNP [dm3] 3L_7253745_SNP [dm6]	C	A	3.439e^-4	0.816	INTRON CG14830
3R	15721250	3R_15721250_SNP [dm3] 3R_19895528_SNP [dm6]	A	G	3.443e^-4	0.816	INTRON CG4733
X	16160001	X_16160001_SNP [dm3] X_16265968_SNP [dm6]	A	G	3.445e^-4	0.816	INTRON CG12507
2L	13341327	2L_13341327_SNP [dm3] 2L_13341327_SNP [dm6]	A	C	3.450e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	10865314	2R_10865314_SNP [dm3] 2R_14977809_SNP [dm6]	C	G	3.450e^-4	0.816	SYNONYMOUS_CODING ckn INTRON ckn
X	17664555	X_17664555_DEL [dm3] X_17770522_DEL [dm6]	TC	T	3.456e^-4	0.816	INTRON unc-4
2L	18580815	2L_18580815_SNP [dm3] 2L_18580815_SNP [dm6]	A	G	3.458e^-4	0.816	INTRON Pde11
X	17664314	X_17664314_SNP [dm3] X_17770281_SNP [dm6]	A	G	3.459e^-4	0.816	INTRON unc-4
3R	16710988	3R_16710988_SNP [dm3] 3R_20885266_SNP [dm6]	T	A	3.459e^-4	0.816	INTERGENIC
3L	22353798	3L_22353798_SNP [dm3] 3L_22360698_SNP [dm6]	C	T	3.466e^-4	0.816	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17663821	X_17663821_SNP [dm3] X_17769788_SNP [dm6]	C	T	3.466e^-4	0.816	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
3L	3418890	3L_3418890_SNP [dm3] 3L_3418890_SNP [dm6]	C	G	3.474e^-4	0.816	UPSTREAM sty INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18648545	2L_18648545_SNP [dm3] 2L_18648545_SNP [dm6]	C	T	3.475e^-4	0.816	INTRON MESR3
2R	14491067	2R_14491067_SNP [dm3] 2R_18603562_SNP [dm6]	T	C	3.480e^-4	0.816	INTRON GEFmeso
2L	9531813	2L_9531813_SNP [dm3] 2L_9531813_SNP [dm6]	C	T	3.482e^-4	0.816	INTRON Oatp30B
2R	7966323	2R_7966323_SNP [dm3] 2R_12078818_SNP [dm6]	T	A	3.489e^-4	0.816	INTRON CG8888
2L	14371771	2L_14371771_SNP [dm3] 2L_14371771_SNP [dm6]	G	C	3.491e^-4	0.816	INTERGENIC
2L	9374150	2L_9374150_SNP [dm3] 2L_9374150_SNP [dm6]	T	C	3.499e^-4	0.816	DOWNSTREAM CR43865 INTRON Shawl
2L	5110345	2L_5110345_SNP [dm3] 2L_5110345_SNP [dm6]	C	T	3.506e^-4	0.816	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4130667	X_4130667_SNP [dm3] X_4236634_SNP [dm6]	T	G	3.506e^-4	0.816	INTERGENIC
3L	3159763	3L_3159763_SNP [dm3] 3L_3159763_SNP [dm6]	G	C	3.508e^-4	0.816	UPSTREAM pfk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	15447690	3R_15447690_SNP [dm3] 3R_19621968_SNP [dm6]	A	T	3.509e^-4	0.816	UPSTREAM CG6231 INTRON CG6231
2R	15245095	2R_15245095_SNP [dm3] 2R_19357590_SNP [dm6]	A	G	3.510e^-4	0.816	UTR_5_PRIME CG11961 UPSTREAM CG11961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10641042	3L_10641042_SNP [dm3] 3L_10647942_SNP [dm6]	C	T	3.514e^-4	0.816	INTRON CG32066
3L	9850057	3L_9850057_SNP [dm3] 3L_9856957_SNP [dm6]	T	C	3.528e^-4	0.816	DOWNSTREAM CG10809 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15052549	2R_15052549_DEL [dm3] 2R_19165044_DEL [dm6]	ATGCCAATTTCAA...	T	3.531e^-4	0.816	INTRON CG10737	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15274470	2L_15274470_SNP [dm3] 2L_15274470_SNP [dm6]	T	A	3.532e^-4	0.816	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16362664	X_16362664_SNP [dm3] X_16468631_SNP [dm6]	G	A	3.533e^-4	0.816	INTRON para
X	4375106	X_4375106_DEL [dm3] X_4481073_DEL [dm6]	AGAA	A	3.548e^-4	0.816	INTRON CR32773 & 1 other
3L	1453417	3L_1453417_SNP [dm3] 3L_1453417_SNP [dm6]	G	A	3.554e^-4	0.816	INTRON Ptp61F
X	16132930	X_16132930_SNP [dm3] X_16238897_SNP [dm6]	G	A	3.557e^-4	0.816	INTERGENIC
2R	19374964	2R_19374964_SNP [dm3] 2R_23487441_SNP [dm6]	C	T	3.564e^-4	0.816	INTRON CG43795
3R	9224825	3R_9224825_SNP [dm3] 3R_13399103_SNP [dm6]	G	C	3.568e^-4	0.816	SYNONYMOUS_CODING CG9796 DOWNSTREAM CG14377	TF binding site mE1_TFBS_cad
3R	12042123	3R_12042123_SNP [dm3] 3R_16216401_SNP [dm6]	A	C	3.576e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17664545	X_17664545_SNP [dm3] X_17770512_SNP [dm6]	C	T	3.579e^-4	0.816	INTRON unc-4
3L	7951325	3L_7951325_INS [dm3] 3L_7958225_INS [dm6]	T	TATCGT	3.582e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18859876	X_18859876_SNP [dm3] X_18965843_SNP [dm6]	T	C	3.582e^-4	0.816	INTRON CG43759	TF binding site BDTNP1_TFBS_dl
X	7915983	X_7915983_SNP [dm3] X_8021950_SNP [dm6]	G	A	3.591e^-4	0.816	UPSTREAM CG15333 INTRON Tbh
2L	5509295	2L_5509295_SNP [dm3] 2L_5509295_SNP [dm6]	T	A	3.596e^-4	0.816	INTERGENIC
3L	5907389	3L_5907389_SNP [dm3] 3L_5914289_SNP [dm6]	T	A	3.598e^-4	0.816	INTRON CG13288
2R	17616842	2R_17616842_SNP [dm3] 2R_21729337_SNP [dm6]	G	A	3.599e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
X	13137630	X_13137630_SNP [dm3] X_13243597_SNP [dm6]	G	A	3.603e^-4	0.816	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	16771114	3L_16771114_SNP [dm3] 3L_16778014_SNP [dm6]	C	G	3.605e^-4	0.816	SYNONYMOUS_CODING CG13025 DOWNSTREAM Nrt	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14688109	X_14688109_SNP [dm3] X_14794076_SNP [dm6]	G	A	3.607e^-4	0.816	SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4512165	3L_4512165_SNP [dm3] 3L_4512165_SNP [dm6]	C	T	3.610e^-4	0.816	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17813456	3R_17813456_SNP [dm3] 3R_21987734_SNP [dm6]	G	T	3.627e^-4	0.816	INTRON Eip93F
2L	8888767	2L_8888767_SNP [dm3] 2L_8888767_SNP [dm6]	A	G	3.628e^-4	0.816	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	16717119	3R_16717119_SNP [dm3] 3R_20891397_SNP [dm6]	G	T	3.628e^-4	0.816	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23644084	3R_23644084_SNP [dm3] 3R_27818362_SNP [dm6]	C	A	3.629e^-4	0.816	INTRON CG34353	TF binding site BDTNP1_TFBS_twi
2L	9346111	2L_9346111_SNP [dm3] 2L_9346111_SNP [dm6]	A	T	3.636e^-4	0.816	INTERGENIC
2L	5962958	2L_5962958_DEL [dm3] 2L_5962958_DEL [dm6]	AG	A	3.636e^-4	0.816	DOWNSTREAM psd INTERGENIC
3R	8611504	3R_8611504_SNP [dm3] 3R_12785782_SNP [dm6]	T	G	3.637e^-4	0.816	INTERGENIC
3R	18090615	3R_18090615_SNP [dm3] 3R_22264893_SNP [dm6]	A	G	3.639e^-4	0.816	INTRON SKIP
2R	17333114	2R_17333114_SNP [dm3] 2R_21445609_SNP [dm6]	G	C	3.645e^-4	0.816	INTRON Sdc
2L	7187412	2L_7187412_SNP [dm3] 2L_7187412_SNP [dm6]	C	T	3.648e^-4	0.816	SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
2L	13431370	2L_13431370_SNP [dm3] 2L_13431370_SNP [dm6]	C	A	3.652e^-4	0.816	INTRON CG42784
3L	9306385	3L_9306385_SNP [dm3] 3L_9313285_SNP [dm6]	A	G	3.653e^-4	0.816	INTERGENIC
3R	24016152	3R_24016152_SNP [dm3] 3R_28190430_SNP [dm6]	T	C	3.664e^-4	0.816	INTRON CG34354
3R	15287267	3R_15287267_SNP [dm3] 3R_19461545_SNP [dm6]	A	C	3.666e^-4	0.816	DOWNSTREAM CG6255 INTRON Dys	TF binding site BDTNP1_TFBS_dl
3L	11936524	3L_11936524_SNP [dm3] 3L_11943424_SNP [dm6]	T	C	3.674e^-4	0.816	UTR_3_PRIME Rpt4R DOWNSTREAM CG5883
3L	11936715	3L_11936715_SNP [dm3] 3L_11943615_SNP [dm6]	A	C	3.674e^-4	0.816	DOWNSTREAM CG5883 & 1 other INTERGENIC
3L	11936873	3L_11936873_SNP [dm3] 3L_11943773_SNP [dm6]	G	A	3.674e^-4	0.816	SYNONYMOUS_CODING CG5883 DOWNSTREAM Rpt4R
3L	1004156	3L_1004156_SNP [dm3] 3L_1004156_SNP [dm6]	T	C	3.678e^-4	0.816	INTRON trio
3R	17889366	3R_17889366_SNP [dm3] 3R_22063644_SNP [dm6]	T	G	3.683e^-4	0.816	INTRON how
2L	15612283	2L_15612283_SNP [dm3] 2L_15612283_SNP [dm6]	G	C	3.684e^-4	0.816	UPSTREAM CG15255 DOWNSTREAM CG11864 INTERGENIC
3R	23546577	3R_23546577_SNP [dm3] 3R_27720855_SNP [dm6]	T	A	3.694e^-4	0.816	INTERGENIC
3L	7427146	3L_7427146_SNP [dm3] 3L_7434046_SNP [dm6]	C	T	3.695e^-4	0.816	SYNONYMOUS_CODING Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	18817356	3L_18817356_SNP [dm3] 3L_18824256_SNP [dm6]	A	G	3.696e^-4	0.816	INTRON Cat
3R	17813512	3R_17813512_SNP [dm3] 3R_21987790_SNP [dm6]	A	G	3.698e^-4	0.816	INTRON Eip93F
X	19051100	X_19051100_SNP [dm3] X_19157067_SNP [dm6]	T	C	3.702e^-4	0.816	INTRON RhoGAP18B
3L	11917123	3L_11917123_SNP [dm3] 3L_11924023_SNP [dm6]	A	G	3.703e^-4	0.816	SYNONYMOUS_CODING CG5718 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4375086	X_4375086_SNP [dm3] X_4481053_SNP [dm6]	T	C	3.710e^-4	0.816	INTRON CR32773 & 1 other
2R	17339759	2R_17339759_SNP [dm3] 2R_21452254_SNP [dm6]	A	G	3.716e^-4	0.816	INTRON Sdc
X	4710216	X_4710216_SNP [dm3] X_4816183_SNP [dm6]	C	G	3.724e^-4	0.816	INTERGENIC
3R	16070126	3R_16070126_SNP [dm3] 3R_20244404_SNP [dm6]	G	A	3.726e^-4	0.816	UTR_3_PRIME Nlg4	TF binding site BDTNP1_TFBS_sna
2R	15251222	2R_15251222_SNP [dm3] 2R_19363717_SNP [dm6]	T	C	3.735e^-4	0.816	UTR_5_PRIME CG10051 DOWNSTREAM CG11961	TF binding site mE1_TFBS_cad
3R	8437127	3R_8437127_SNP [dm3] 3R_12611405_SNP [dm6]	T	A	3.737e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	8437131	3R_8437131_SNP [dm3] 3R_12611409_SNP [dm6]	C	G	3.737e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	19537645	2R_19537645_SNP [dm3] 2R_23650122_SNP [dm6]	T	G	3.749e^-4	0.816	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12319998	2L_12319998_SNP [dm3] 2L_12319998_SNP [dm6]	G	A	3.751e^-4	0.816	INTERGENIC
3R	25847018	3R_25847018_SNP [dm3] 3R_30021296_SNP [dm6]	C	G	3.753e^-4	0.816	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	1638748	2L_1638748_SNP [dm3] 2L_1638748_SNP [dm6]	C	T	3.757e^-4	0.816	INTERGENIC
3R	23640625	3R_23640625_SNP [dm3] 3R_27814903_SNP [dm6]	A	G	3.760e^-4	0.816	INTRON CG34353
3R	17995554	3R_17995554_SNP [dm3] 3R_22169832_SNP [dm6]	A	T	3.767e^-4	0.816	INTRON SKIP
2R	10544276	2R_10544276_SNP [dm3] 2R_14656771_SNP [dm6]	G	A	3.771e^-4	0.816	DOWNSTREAM Adgf-E INTERGENIC
3R	16129108	3R_16129108_SNP [dm3] 3R_20303386_SNP [dm6]	G	A	3.777e^-4	0.816	UTR_3_PRIME cic DOWNSTREAM CG4367
2R	20138434	2R_20138434_SNP [dm3] 2R_24250911_SNP [dm6]	G	C	3.778e^-4	0.816	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
2R	20138542	2R_20138542_SNP [dm3] 2R_24251019_SNP [dm6]	T	C	3.778e^-4	0.816	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
2L	18586367	2L_18586367_SNP [dm3] 2L_18586367_SNP [dm6]	G	A	3.789e^-4	0.816	INTRON Pde11
2R	16173609	2R_16173609_SNP [dm3] 2R_20286104_SNP [dm6]	G	C	3.796e^-4	0.816	NON_SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3R	15012957	3R_15012957_INS [dm3] 3R_19187235_INS [dm6]	C	CCGAGTGC	3.798e^-4	0.816	INTRON CG31475	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13341145	2R_13341145_SNP [dm3] 2R_17453640_SNP [dm6]	T	A	3.801e^-4	0.816	INTRON CG10764
X	20330148	X_20330148_SNP [dm3] X_20459121_SNP [dm6]	A	C	3.806e^-4	0.816	INTRON CG32506
3R	8611612	3R_8611612_SNP [dm3] 3R_12785890_SNP [dm6]	G	A	3.807e^-4	0.816	INTERGENIC
2R	9731327	2R_9731327_SNP [dm3] 2R_13843822_SNP [dm6]	G	A	3.807e^-4	0.816	SYNONYMOUS_CODING Syngr
3L	11624309	3L_11624309_SNP [dm3] 3L_11631209_SNP [dm6]	A	T	3.808e^-4	0.816	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
2R	16454105	2R_16454105_SNP [dm3] 2R_20566600_SNP [dm6]	C	G	3.809e^-4	0.816	INTRON qsm
3R	24943939	3R_24943939_SNP [dm3] 3R_29118217_SNP [dm6]	G	A	3.814e^-4	0.816	UTR_3_PRIME Atg14 DOWNSTREAM yem	TF binding site BDTNP1_TFBS_dl
3R	15182677	3R_15182677_SNP [dm3] 3R_19356955_SNP [dm6]	A	G	3.815e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	20871721	X_20871721_SNP [dm3] X_21000694_SNP [dm6]	T	A	3.817e^-4	0.816	INTERGENIC
X	16428938	X_16428938_SNP [dm3] X_16534905_SNP [dm6]	T	A	3.819e^-4	0.816	INTERGENIC
X	4284980	X_4284980_SNP [dm3] X_4390947_SNP [dm6]	A	G	3.820e^-4	0.816	INTRON CR32773
2L	13726409	2L_13726409_SNP [dm3] 2L_13726409_SNP [dm6]	G	C	3.822e^-4	0.816	INTERGENIC
3L	15642686	3L_15642686_SNP [dm3] 3L_15649586_SNP [dm6]	G	T	3.830e^-4	0.816	SYNONYMOUS_CODING Eig71Ea UPSTREAM Eig71Eb DOWNSTREAM CG43083
X	10122693	X_10122693_SNP [dm3] X_10228660_SNP [dm6]	C	T	3.830e^-4	0.816	INTRON CG34408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18064022	3R_18064022_SNP [dm3] 3R_22238300_SNP [dm6]	T	G	3.843e^-4	0.816	INTRON SKIP
3L	3861556	3L_3861556_SNP [dm3] 3L_3861556_SNP [dm6]	G	A	3.855e^-4	0.816	UTR_3_PRIME Awh
X	6489165	X_6489165_SNP [dm3] X_6595132_SNP [dm6]	C	T	3.856e^-4	0.816	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	16431147	X_16431147_SNP [dm3] X_16537114_SNP [dm6]	G	A	3.868e^-4	0.816	INTERGENIC
2L	19879295	2L_19879295_SNP [dm3] 2L_19879295_SNP [dm6]	A	C	3.868e^-4	0.816	INTRON sick
2R	17995058	2R_17995058_DEL [dm3] 2R_22107553_DEL [dm6]	CTT	C	3.875e^-4	0.816	DOWNSTREAM Vrp1 INTRON Vrp1
3R	13735522	3R_13735522_SNP [dm3] 3R_17909800_SNP [dm6]	C	T	3.877e^-4	0.816	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	5265754	2L_5265754_SNP [dm3] 2L_5265754_SNP [dm6]	A	G	3.886e^-4	0.816	SYNONYMOUS_CODING Cyp4ac1 UPSTREAM Cyp4ac2 INTRON tkv	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17664119	X_17664119_SNP [dm3] X_17770086_SNP [dm6]	T	G	3.888e^-4	0.816	INTRON unc-4
X	7150929	X_7150929_SNP [dm3] X_7256896_SNP [dm6]	A	G	3.892e^-4	0.816	INTRON CR44357
3L	6098668	3L_6098668_SNP [dm3] 3L_6105568_SNP [dm6]	C	T	3.893e^-4	0.816	INTRON Ets65A	TF binding site BDTNP1_TFBS_slp1
X	16159976	X_16159976_SNP [dm3] X_16265943_SNP [dm6]	A	G	3.894e^-4	0.816	INTRON CG12507
3L	17271049	3L_17271049_SNP [dm3] 3L_17277949_SNP [dm6]	A	C	3.895e^-4	0.816	INTERGENIC
2L	16406104	2L_16406104_SNP [dm3] 2L_16406104_SNP [dm6]	C	T	3.904e^-4	0.816	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13655685	2R_13655685_SNP [dm3] 2R_17768180_SNP [dm6]	G	A	3.909e^-4	0.816	SYNONYMOUS_CODING CG18635 UPSTREAM CG14488	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10218472	3L_10218472_SNP [dm3] 3L_10225372_SNP [dm6]	A	C	3.910e^-4	0.816	UPSTREAM scramb1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15056774	2R_15056774_SNP [dm3] 2R_19169269_SNP [dm6]	A	G	3.912e^-4	0.816	UPSTREAM CG10737 INTRON CG10737
3L	5676695	3L_5676695_SNP [dm3] 3L_5683595_SNP [dm6]	G	A	3.914e^-4	0.816	INTRON sif
2L	10025083	2L_10025083_SNP [dm3] 2L_10025083_SNP [dm6]	A	C	3.925e^-4	0.816	INTERGENIC
3L	17832603	3L_17832603_SNP [dm3] 3L_17839503_SNP [dm6]	A	G	3.929e^-4	0.816	UTR_3_PRIME Grd DOWNSTREAM CG5577
3R	19569491	3R_19569491_SNP [dm3] 3R_23743769_SNP [dm6]	T	A	3.939e^-4	0.816	INTRON Hmgcr
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	3.942e^-4	0.816	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	4998371	X_4998371_SNP [dm3] X_5104338_SNP [dm6]	G	T	3.946e^-4	0.816	INTRON rg & 1 other
2L	6531166	2L_6531166_SNP [dm3] 2L_6531166_SNP [dm6]	C	A	3.946e^-4	0.816	UPSTREAM eya INTRON eya	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6618333	2L_6618333_SNP [dm3] 2L_6618333_SNP [dm6]	C	T	3.954e^-4	0.816	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
X	18842214	X_18842214_SNP [dm3] X_18948181_SNP [dm6]	G	A	3.957e^-4	0.816	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	11566031	X_11566031_SNP [dm3] X_11671998_SNP [dm6]	G	C	3.958e^-4	0.816	INTRON Ptp10D
3R	26216460	3R_26216460_SNP [dm3] 3R_30390738_SNP [dm6]	A	G	3.966e^-4	0.816	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19928420	2L_19928420_SNP [dm3] 2L_19928420_SNP [dm6]	T	G	3.967e^-4	0.816	INTRON sick
2R	14453516	2R_14453516_SNP [dm3] 2R_18566011_SNP [dm6]	C	T	3.976e^-4	0.816	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
X	11269828	X_11269828_SNP [dm3] X_11375795_SNP [dm6]	G	A	3.977e^-4	0.816	UTR_5_PRIME dlg1 INTRON dlg1
3L	12301519	3L_12301519_SNP [dm3] 3L_12308419_SNP [dm6]	G	A	3.996e^-4	0.816	INTERGENIC
3L	4603130	3L_4603130_SNP [dm3] 3L_4603130_SNP [dm6]	T	A	4.001e^-4	0.816	INTRON Src64B
3L	16705757	3L_16705757_SNP [dm3] 3L_16712657_SNP [dm6]	C	A	4.001e^-4	0.816	UTR_5_PRIME Dab UPSTREAM Lasp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	12982769	2R_12982769_SNP [dm3] 2R_17095264_SNP [dm6]	C	T	4.006e^-4	0.816	INTRON GstS1	TF binding site mE1_TFBS_cad
2R	10954378	2R_10954378_SNP [dm3] 2R_15066873_SNP [dm6]	G	A	4.010e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26929385	3R_26929385_SNP [dm3] 3R_31103663_SNP [dm6]	A	T	4.013e^-4	0.816	INTERGENIC
2L	2547461	2L_2547461_SNP [dm3] 2L_2547461_SNP [dm6]	C	A	4.018e^-4	0.816	INTERGENIC
3R	3939424	3R_3939424_SNP [dm3] 3R_8113702_SNP [dm6]	C	T	4.021e^-4	0.816	INTRON puc EXON CR44331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16454119	2R_16454119_SNP [dm3] 2R_20566614_SNP [dm6]	C	T	4.028e^-4	0.816	INTRON qsm
2R	7151278	2R_7151278_SNP [dm3] 2R_11263773_SNP [dm6]	A	T	4.031e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_ttk
X	19660447	X_19660447_SNP [dm3] X_19766414_SNP [dm6]	T	A	4.032e^-4	0.816	DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	20389210	2R_20389210_SNP [dm3] 2R_24501687_SNP [dm6]	A	T	4.036e^-4	0.816	INTRON Prosalpha4T2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10420598	3L_10420598_SNP [dm3] 3L_10427498_SNP [dm6]	G	C	4.041e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13795621	2R_13795621_SNP [dm3] 2R_17908116_SNP [dm6]	A	G	4.046e^-4	0.816	INTRON Elk
3R	16955265	3R_16955265_SNP [dm3] 3R_21129543_SNP [dm6]	A	G	4.047e^-4	0.816	NON_SYNONYMOUS_CODING Obp93a UTR_3_PRIME CG5793 UPSTREAM Ice2 DOWNSTREAM CG5793
2R	1397132	2R_1397132_SNP [dm3] 2R_5509627_SNP [dm6]	G	A	4.050e^-4	0.816	INTRON CG30438	transposable element FlyBase
3R	16890967	3R_16890967_SNP [dm3] 3R_21065245_SNP [dm6]	G	A	4.054e^-4	0.816	UTR_5_PRIME AnxB9 UPSTREAM Cortactin & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	2529118	3L_2529118_SNP [dm3] 3L_2529118_SNP [dm6]	A	G	4.056e^-4	0.816	INTRON Spn
3L	13966638	3L_13966638_SNP [dm3] 3L_13973538_SNP [dm6]	G	A	4.061e^-4	0.816	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18391279	3R_18391279_INS [dm3] 3R_22565557_INS [dm6]	A	ATGGCATTTC	4.064e^-4	0.816	INTERGENIC
X	17452238	X_17452238_SNP [dm3] X_17558205_SNP [dm6]	C	T	4.068e^-4	0.816	INTRON CG43658
3L	683870	3L_683870_SNP [dm3] 3L_683870_SNP [dm6]	T	C	4.070e^-4	0.816	SYNONYMOUS_CODING ebd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	24424417	3R_24424417_SNP [dm3] 3R_28598695_SNP [dm6]	C	G	4.071e^-4	0.816	INTRON Noa36	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15182111	3R_15182111_SNP [dm3] 3R_19356389_SNP [dm6]	T	A	4.074e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	7338275	3R_7338275_SNP [dm3] 3R_11512553_SNP [dm6]	T	C	4.078e^-4	0.816	INTERGENIC
2L	6787659	2L_6787659_SNP [dm3] 2L_6787659_SNP [dm6]	T	C	4.084e^-4	0.816	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10811328	2R_10811328_SNP [dm3] 2R_14923823_SNP [dm6]	A	T	4.087e^-4	0.816	INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11270106	X_11270106_SNP [dm3] X_11376073_SNP [dm6]	A	G	4.091e^-4	0.816	NON_SYNONYMOUS_CODING dlg1 INTRON dlg1
3L	21903655	3L_21903655_SNP [dm3] 3L_21910555_SNP [dm6]	T	C	4.094e^-4	0.816	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2409663	3L_2409663_SNP [dm3] 3L_2409663_SNP [dm6]	A	G	4.098e^-4	0.816	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	3396175	2L_3396175_SNP [dm3] 2L_3396175_SNP [dm6]	C	T	4.100e^-4	0.816	INTERGENIC
3L	16883909	3L_16883909_SNP [dm3] 3L_16890809_SNP [dm6]	C	T	4.105e^-4	0.816	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9394899	3R_9394899_SNP [dm3] 3R_13569177_SNP [dm6]	T	C	4.108e^-4	0.816	INTERGENIC
2L	20405855	2L_20405855_SNP [dm3] 2L_20405855_SNP [dm6]	A	T	4.115e^-4	0.816	INTRON CG10947
3L	13338518	3L_13338518_SNP [dm3] 3L_13345418_SNP [dm6]	G	A	4.124e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15697560	3L_15697560_SNP [dm3] 3L_15704460_SNP [dm6]	G	A	4.124e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16560265	3L_16560265_SNP [dm3] 3L_16567165_SNP [dm6]	C	T	4.124e^-4	0.816	NON_SYNONYMOUS_CODING CG43206 INTRON Mipp1
3R	18767362	3R_18767362_SNP [dm3] 3R_22941640_SNP [dm6]	C	A	4.125e^-4	0.816	INTRON klg
X	20871432	X_20871432_SNP [dm3] X_21000405_SNP [dm6]	A	C	4.126e^-4	0.816	INTERGENIC
3L	12871670	3L_12871670_SNP [dm3] 3L_12878570_SNP [dm6]	A	C	4.128e^-4	0.816	INTERGENIC
3R	9816045	3R_9816045_SNP [dm3] 3R_13990323_SNP [dm6]	A	T	4.136e^-4	0.816	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14763396	X_14763396_INS [dm3] X_14869363_INS [dm6]	A	ATTCA	4.141e^-4	0.816	INTRON Flo2 & 1 other
X	12876162	X_12876162_SNP [dm3] X_12982129_SNP [dm6]	G	T	4.144e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15005527	2R_15005527_SNP [dm3] 2R_19118022_SNP [dm6]	G	A	4.145e^-4	0.816	INTRON 5-HT1A
3L	15802242	3L_15802242_SNP [dm3] 3L_15809142_SNP [dm6]	G	T	4.145e^-4	0.816	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2L	6704977	2L_6704977_SNP [dm3] 2L_6704977_SNP [dm6]	G	A	4.153e^-4	0.816	INTRON Tsp	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17692166	X_17692166_SNP [dm3] X_17798133_SNP [dm6]	G	A	4.154e^-4	0.816	INTRON OdsH
X	2577829	X_2577829_SNP [dm3] X_2683796_SNP [dm6]	C	A	4.155e^-4	0.816	UPSTREAM CG2652 EXON CR44470
3L	15014724	3L_15014724_SNP [dm3] 3L_15021624_SNP [dm6]	T	C	4.160e^-4	0.816	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12897542	X_12897542_SNP [dm3] X_13003509_SNP [dm6]	C	T	4.162e^-4	0.816	DOWNSTREAM CG15719 INTRON rad
3R	19836806	3R_19836806_SNP [dm3] 3R_24011084_SNP [dm6]	C	T	4.170e^-4	0.816	INTRON KrT95D
X	18845652	X_18845652_SNP [dm3] X_18951619_SNP [dm6]	T	A	4.173e^-4	0.816	INTRON CG43759
3R	16422978	3R_16422978_SNP [dm3] 3R_20597256_SNP [dm6]	A	G	4.179e^-4	0.816	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5380557	X_5380557_SNP [dm3] X_5486524_SNP [dm6]	T	C	4.183e^-4	0.816	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16650811	3R_16650811_SNP [dm3] 3R_20825089_SNP [dm6]	T	C	4.185e^-4	0.816	UTR_3_PRIME AdSS UPSTREAM CG17272	TF binding site mE1_TFBS_cad
X	17664008	X_17664008_SNP [dm3] X_17769975_SNP [dm6]	G	A	4.192e^-4	0.816	INTRON unc-4
3R	5008714	3R_5008714_SNP [dm3] 3R_9182992_SNP [dm6]	A	G	4.193e^-4	0.816	INTRON pum
X	18417291	X_18417291_SNP [dm3] X_18523258_SNP [dm6]	T	C	4.198e^-4	0.816	UPSTREAM CG6481 INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18343150	3L_18343150_SNP [dm3] 3L_18350050_SNP [dm6]	A	T	4.199e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	17664454	X_17664454_INS [dm3] X_17770421_INS [dm6]	A	AGAGCCTA	4.207e^-4	0.816	INTRON unc-4
X	12874374	X_12874374_SNP [dm3] X_12980341_SNP [dm6]	A	G	4.214e^-4	0.816	INTERGENIC
3R	26126977	3R_26126977_SNP [dm3] 3R_30301255_SNP [dm6]	A	G	4.214e^-4	0.816	INTRON hdc
3L	15019796	3L_15019796_SNP [dm3] 3L_15026696_SNP [dm6]	C	A	4.222e^-4	0.816	INTRON Sytbeta
3R	19900770	3R_19900770_SNP [dm3] 3R_24075048_SNP [dm6]	T	A	4.228e^-4	0.816	INTRON 4EHP
X	6810582	X_6810582_SNP [dm3] X_6916549_SNP [dm6]	T	C	4.229e^-4	0.816	INTRON CG14431
2L	9910800	2L_9910800_SNP [dm3] 2L_9910800_SNP [dm6]	G	A	4.235e^-4	0.816	INTRON Etl1	TF binding site mE1_TFBS_cad
3L	14075709	3L_14075709_SNP [dm3] 3L_14082609_SNP [dm6]	C	T	4.237e^-4	0.816	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad
3R	26218296	3R_26218296_SNP [dm3] 3R_30392574_SNP [dm6]	T	G	4.242e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19519301	2R_19519301_SNP [dm3] 2R_23631778_SNP [dm6]	C	A	4.244e^-4	0.816	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16890861	3R_16890861_SNP [dm3] 3R_21065139_SNP [dm6]	G	C	4.245e^-4	0.816	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	15430826	3R_15430826_SNP [dm3] 3R_19605104_SNP [dm6]	A	C	4.247e^-4	0.816	SYNONYMOUS_CODING CG7342
2R	6231304	2R_6231304_SNP [dm3] 2R_10343799_SNP [dm6]	C	T	4.248e^-4	0.816	INTRON CG42732
3R	18613311	3R_18613311_SNP [dm3] 3R_22787589_SNP [dm6]	C	A	4.251e^-4	0.816	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13338531	3L_13338531_SNP [dm3] 3L_13345431_SNP [dm6]	A	G	4.251e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19357886	X_19357886_SNP [dm3] X_19463853_SNP [dm6]	G	A	4.255e^-4	0.816	INTRON kek5
X	11270128	X_11270128_SNP [dm3] X_11376095_SNP [dm6]	C	A	4.272e^-4	0.816	NON_SYNONYMOUS_CODING dlg1 INTRON dlg1
2R	16443687	2R_16443687_SNP [dm3] 2R_20556182_SNP [dm6]	G	A	4.285e^-4	0.816	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6600814	3R_6600814_SNP [dm3] 3R_10775092_SNP [dm6]	T	G	4.287e^-4	0.816	INTRON CG45076 & 2 others
X	6425282	X_6425282_SNP [dm3] X_6531249_SNP [dm6]	G	A	4.303e^-4	0.816	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other	TF binding site BDTNP1_TFBS_sna
2R	13622403	2R_13622403_SNP [dm3] 2R_17734898_SNP [dm6]	G	A	4.307e^-4	0.816	UTR_3_PRIME CG6406 DOWNSTREAM CG34195
3R	26218194	3R_26218194_SNP [dm3] 3R_30392472_SNP [dm6]	A	G	4.309e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23770806	3R_23770806_SNP [dm3] 3R_27945084_SNP [dm6]	G	T	4.319e^-4	0.816	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21442056	3R_21442056_SNP [dm3] 3R_25616334_SNP [dm6]	C	A	4.319e^-4	0.816	INTRON Npl4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16743645	2R_16743645_SNP [dm3] 2R_20856140_SNP [dm6]	C	T	4.325e^-4	0.816	INTERGENIC
3L	679819	3L_679819_SNP [dm3] 3L_679819_SNP [dm6]	T	G	4.334e^-4	0.816	UTR_5_PRIME CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13655668	2R_13655668_SNP [dm3] 2R_17768163_SNP [dm6]	A	G	4.334e^-4	0.816	SYNONYMOUS_CODING CG18635 UPSTREAM CG14488	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18343305	3L_18343305_SNP [dm3] 3L_18350205_SNP [dm6]	G	T	4.339e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5395780	3L_5395780_SNP [dm3] 3L_5402680_SNP [dm6]	G	C	4.343e^-4	0.816	INTERGENIC
3L	5395782	3L_5395782_SNP [dm3] 3L_5402682_SNP [dm6]	A	T	4.343e^-4	0.816	INTERGENIC
X	17548679	X_17548679_SNP [dm3] X_17654646_SNP [dm6]	G	A	4.348e^-4	0.816	SYNONYMOUS_CODING IntS2	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10932401	2R_10932401_DEL [dm3] 2R_15044896_DEL [dm6]	TTTT	T	4.367e^-4	0.816	INTERGENIC
3R	16422759	3R_16422759_SNP [dm3] 3R_20597037_SNP [dm6]	G	A	4.372e^-4	0.816	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10954476	2R_10954476_SNP [dm3] 2R_15066971_SNP [dm6]	A	C	4.375e^-4	0.816	INTERGENIC
3R	26216463	3R_26216463_SNP [dm3] 3R_30390741_SNP [dm6]	T	C	4.378e^-4	0.816	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26216468	3R_26216468_SNP [dm3] 3R_30390746_SNP [dm6]	A	G	4.378e^-4	0.816	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26216479	3R_26216479_SNP [dm3] 3R_30390757_SNP [dm6]	G	T	4.378e^-4	0.816	DOWNSTREAM Fer2LCH INTERGENIC	TF binding site mE1_TFBS_Trl
X	20434790	X_20434790_SNP [dm3] X_20563763_SNP [dm6]	T	A	4.384e^-4	0.816	INTRON RunxB
3R	17813459	3R_17813459_DEL [dm3] 3R_21987737_DEL [dm6]	ATA	A	4.394e^-4	0.816	INTRON Eip93F
3R	17378835	3R_17378835_SNP [dm3] 3R_21553113_SNP [dm6]	A	G	4.394e^-4	0.816	INTRON slou
2L	8588835	2L_8588835_SNP [dm3] 2L_8588835_SNP [dm6]	C	T	4.396e^-4	0.816	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
X	16160010	X_16160010_INS [dm3] X_16265977_INS [dm6]	A	ATTAAA	4.398e^-4	0.816	INTRON CG12507

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.851e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2128 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16909203	2R_16909203_SNP [dm3] 2R_21021698_SNP [dm6]	A	T	1.444e^-6	0.741	INTRON RIC-3
2R	16546477	2R_16546477_SNP [dm3] 2R_20658972_SNP [dm6]	C	T	3.569e^-6	0.741	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10563298	3L_10563298_SNP [dm3] 3L_10570198_SNP [dm6]	A	G	3.664e^-6	0.741	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2L	16440636	2L_16440636_SNP [dm3] 2L_16440636_SNP [dm6]	A	T	4.098e^-6	0.741	INTRON CG5888
X	12876436	X_12876436_SNP [dm3] X_12982403_SNP [dm6]	C	T	4.630e^-6	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17664068	X_17664068_SNP [dm3] X_17770035_SNP [dm6]	T	A	5.588e^-6	0.741	INTRON unc-4
3L	15867278	3L_15867278_SNP [dm3] 3L_15874178_SNP [dm6]	C	T	5.916e^-6	0.741	INTRON pHCl
2L	18953495	2L_18953495_SNP [dm3] 2L_18953495_SNP [dm6]	A	G	6.180e^-6	0.741	SYNONYMOUS_CODING CG10621	TF binding site mE1_TFBS_cad
3L	23564711	3L_23564711_INS [dm3] 3L_23571611_INS [dm6]	T	TCT	6.553e^-6	0.741	INTRON AGO3
3R	1983531	3R_1983531_SNP [dm3] 3R_6157809_SNP [dm6]	T	A	6.601e^-6	0.741	UPSTREAM CG31559 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13425255	3R_13425255_SNP [dm3] 3R_17599533_SNP [dm6]	A	T	6.743e^-6	0.741	INTERGENIC
2L	6104257	2L_6104257_SNP [dm3] 2L_6104257_SNP [dm6]	G	A	8.231e^-6	0.741	INTRON stai
X	7882433	X_7882433_SNP [dm3] X_7988400_SNP [dm6]	T	C	8.922e^-6	0.741	INTERGENIC
2L	1988354	2L_1988354_SNP [dm3] 2L_1988354_SNP [dm6]	T	A	9.074e^-6	0.741	UTR_5_PRIME Npc2a UPSTREAM Got2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	640955	2R_640955_SNP [dm3] 2R_4753450_SNP [dm6]	G	A	9.407e^-6	0.741	INTRON conu	transposable element FlyBase
X	2384902	X_2384902_SNP [dm3] X_2490869_SNP [dm6]	A	G	9.657e^-6	0.741	INTRON trol	TF binding site BDTNP1_TFBS_twi
3R	7161087	3R_7161087_SNP [dm3] 3R_11335365_SNP [dm6]	G	A	1.025e^-5	0.741	UTR_5_PRIME pros INTRON pros	TF binding site BDTNP1_TFBS_dl
3L	23606613	3L_23606613_SNP [dm3] 3L_23613513_SNP [dm6]	C	T	1.073e^-5	0.741	INTRON AGO3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	4512165	3L_4512165_SNP [dm3] 3L_4512165_SNP [dm6]	C	T	1.107e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11269997	X_11269997_SNP [dm3] X_11375964_SNP [dm6]	G	C	1.218e^-5	0.741	SYNONYMOUS_CODING dlg1 INTRON dlg1
2L	15761906	2L_15761906_SNP [dm3] 2L_15761906_SNP [dm6]	C	T	1.275e^-5	0.741	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
3R	18064857	3R_18064857_SNP [dm3] 3R_22239135_SNP [dm6]	C	G	1.284e^-5	0.741	INTRON SKIP
3L	10542142	3L_10542142_SNP [dm3] 3L_10549042_SNP [dm6]	T	C	1.325e^-5	0.741	INTRON A2bp1
2L	7144253	2L_7144253_SNP [dm3] 2L_7144253_SNP [dm6]	T	G	1.366e^-5	0.741	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9352516	2R_9352516_SNP [dm3] 2R_13465011_SNP [dm6]	G	T	1.398e^-5	0.741	INTRON arr	TF binding site mE1_TFBS_inv
3L	19937407	3L_19937407_SNP [dm3] 3L_19944307_SNP [dm6]	T	C	1.406e^-5	0.741	INTRON Ac76E
X	2409065	X_2409065_SNP [dm3] X_2515032_SNP [dm6]	T	C	1.444e^-5	0.741	INTRON trol
3R	18371228	3R_18371228_SNP [dm3] 3R_22545506_SNP [dm6]	T	A	1.582e^-5	0.741	INTRON AdipoR
3L	4512106	3L_4512106_SNP [dm3] 3L_4512106_SNP [dm6]	T	A	1.641e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7754492	3L_7754492_SNP [dm3] 3L_7761392_SNP [dm6]	C	T	1.747e^-5	0.741	UTR_5_PRIME Hn INTRON Hn
2L	11246328	2L_11246328_DEL [dm3] 2L_11246328_DEL [dm6]	TTAT	T	1.766e^-5	0.741	INTRON ab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4512116	3L_4512116_SNP [dm3] 3L_4512116_SNP [dm6]	G	A	1.826e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4332832	2L_4332832_SNP [dm3] 2L_4332832_SNP [dm6]	C	T	1.830e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	4512167	3L_4512167_SNP [dm3] 3L_4512167_SNP [dm6]	G	C	1.851e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	628542	2R_628542_SNP [dm3] 2R_4741037_SNP [dm6]	G	A	1.904e^-5	0.741	INTERGENIC	transposable element FlyBase
X	16988246	X_16988246_SNP [dm3] X_17094213_SNP [dm6]	T	C	1.908e^-5	0.741	INTRON CG16700 & 1 other
3L	4512131	3L_4512131_SNP [dm3] 3L_4512131_SNP [dm6]	T	G	1.956e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4512132	3L_4512132_INS [dm3] 3L_4512132_INS [dm6]	G	GAAG	1.966e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18371390	3R_18371390_SNP [dm3] 3R_22545668_SNP [dm6]	A	T	2.010e^-5	0.741	INTRON AdipoR
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	2.045e^-5	0.741	INTRON slou
3L	10563477	3L_10563477_SNP [dm3] 3L_10570377_SNP [dm6]	G	T	2.100e^-5	0.741	INTRON A2bp1
3R	25909583	3R_25909583_INS [dm3] 3R_30083861_INS [dm6]	T	TTT	2.111e^-5	0.741	INTRON sima	TF binding site mE1_TFBS_Trl
3L	4512090	3L_4512090_SNP [dm3] 3L_4512090_SNP [dm6]	C	T	2.189e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18037736	3R_18037736_SNP [dm3] 3R_22212014_SNP [dm6]	C	A	2.194e^-5	0.741	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP	TF binding site mE1_TFBS_cad
3L	4512164	3L_4512164_SNP [dm3] 3L_4512164_SNP [dm6]	G	A	2.317e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6740176	2R_6740176_SNP [dm3] 2R_10852671_SNP [dm6]	T	C	2.324e^-5	0.741	UPSTREAM CR45136 INTRON CG30015
2R	20378508	2R_20378508_SNP [dm3] 2R_24490985_SNP [dm6]	C	A	2.331e^-5	0.741	DOWNSTREAM CG13579 INTERGENIC
3R	7592851	3R_7592851_INS [dm3] 3R_11767129_INS [dm6]	G	GGAA	2.331e^-5	0.741	UTR_3_PRIME l_3_neo38
2L	8238525	2L_8238525_SNP [dm3] 2L_8238525_SNP [dm6]	C	G	2.343e^-5	0.741	INTRON Pvr
X	7882441	X_7882441_SNP [dm3] X_7988408_SNP [dm6]	A	G	2.350e^-5	0.741	INTERGENIC
3R	22947150	3R_22947150_SNP [dm3] 3R_27121428_SNP [dm6]	G	A	2.387e^-5	0.741	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
3L	7754482	3L_7754482_SNP [dm3] 3L_7761382_SNP [dm6]	A	T	2.434e^-5	0.741	UTR_5_PRIME Hn INTRON Hn
X	3734982	X_3734982_SNP [dm3] X_3840949_SNP [dm6]	G	T	2.445e^-5	0.741	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3L	20031463	3L_20031463_SNP [dm3] 3L_20038363_SNP [dm6]	A	T	2.585e^-5	0.741	INTERGENIC
3L	10563295	3L_10563295_SNP [dm3] 3L_10570195_SNP [dm6]	T	A	2.613e^-5	0.741	INTRON A2bp1	TF binding site mE1_TFBS_HSA
3L	24114174	3L_24114174_SNP [dm3] 3L_24121074_SNP [dm6]	T	C	2.651e^-5	0.741	INTRON Snap25
2R	1670165	2R_1670165_SNP [dm3] 2R_5782660_SNP [dm6]	A	C	2.673e^-5	0.741	UTR_5_PRIME ZnT41F INTRON ZnT41F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	9998469	3R_9998469_SNP [dm3] 3R_14172747_SNP [dm6]	G	A	2.682e^-5	0.741	UTR_3_PRIME Dop1R1
3R	18806555	3R_18806555_SNP [dm3] 3R_22980833_SNP [dm6]	G	T	2.742e^-5	0.741	DOWNSTREAM Nha2 INTERGENIC
3R	7630056	3R_7630056_SNP [dm3] 3R_11804334_SNP [dm6]	A	C	2.772e^-5	0.741	UTR_5_PRIME ClC-a INTRON ClC-a
2R	12534247	2R_12534247_SNP [dm3] 2R_16646742_SNP [dm6]	C	T	2.863e^-5	0.741	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23003428	3R_23003428_SNP [dm3] 3R_27177706_SNP [dm6]	A	C	2.872e^-5	0.741	INTRON Ser	TF binding site mE1_TFBS_cad
2L	15863957	2L_15863957_SNP [dm3] 2L_15863957_SNP [dm6]	G	C	2.925e^-5	0.741	DOWNSTREAM CR42791 & 1 other INTERGENIC
3L	23634766	3L_23634766_SNP [dm3] 3L_23641666_SNP [dm6]	G	T	2.926e^-5	0.741	INTRON AGO3	transposable element FlyBase
3R	18064210	3R_18064210_SNP [dm3] 3R_22238488_SNP [dm6]	G	A	2.927e^-5	0.741	INTRON SKIP
2R	6740253	2R_6740253_INS [dm3] 2R_10852748_INS [dm6]	C	TT	2.953e^-5	0.741	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	7753657	3L_7753657_SNP [dm3] 3L_7760557_SNP [dm6]	T	G	2.968e^-5	0.741	UTR_5_PRIME Hn UPSTREAM Hn
2R	6740149	2R_6740149_SNP [dm3] 2R_10852644_SNP [dm6]	G	T	2.970e^-5	0.741	UPSTREAM CR45136 INTRON CG30015
2R	10427184	2R_10427184_SNP [dm3] 2R_14539679_SNP [dm6]	T	C	2.978e^-5	0.741	INTRON ttv
3L	16648748	3L_16648748_SNP [dm3] 3L_16655648_SNP [dm6]	A	T	2.984e^-5	0.741	INTRON Baldspot
3L	4512130	3L_4512130_SNP [dm3] 3L_4512130_SNP [dm6]	G	C	2.993e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9374227	2L_9374227_SNP [dm3] 2L_9374227_SNP [dm6]	C	T	3.052e^-5	0.741	DOWNSTREAM CR43865 INTRON Shawl
2R	9240636	2R_9240636_SNP [dm3] 2R_13353131_SNP [dm6]	A	G	3.057e^-5	0.741	DOWNSTREAM CG17048 INTRON CR44206
X	18415857	X_18415857_SNP [dm3] X_18521824_SNP [dm6]	C	T	3.108e^-5	0.741	NON_SYNONYMOUS_CODING CG6481 INTRON Bx	TF binding site mE1_TFBS_sens
X	17664374	X_17664374_SNP [dm3] X_17770341_SNP [dm6]	G	A	3.110e^-5	0.741	INTRON unc-4
3L	14058013	3L_14058013_SNP [dm3] 3L_14064913_SNP [dm6]	C	T	3.205e^-5	0.741	INTRON CG32138
2L	12312620	2L_12312620_SNP [dm3] 2L_12312620_SNP [dm6]	C	T	3.228e^-5	0.741	UTR_3_PRIME aret DOWNSTREAM aret
2L	9511050	2L_9511050_SNP [dm3] 2L_9511050_SNP [dm6]	A	T	3.387e^-5	0.741	INTRON CG33298
3R	7157566	3R_7157566_SNP [dm3] 3R_11331844_SNP [dm6]	T	G	3.454e^-5	0.741	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16879626	2R_16879626_SNP [dm3] 2R_20992121_SNP [dm6]	G	A	3.485e^-5	0.741	UPSTREAM CG3216 DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14566262	2L_14566262_SNP [dm3] 2L_14566262_SNP [dm6]	A	G	3.531e^-5	0.741	INTERGENIC
X	17663745	X_17663745_SNP [dm3] X_17769712_SNP [dm6]	G	T	3.560e^-5	0.741	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
X	17664612	X_17664612_SNP [dm3] X_17770579_SNP [dm6]	A	C	3.567e^-5	0.741	INTRON unc-4
3L	23953498	3L_23953498_SNP [dm3] 3L_23960398_SNP [dm6]	T	A	3.610e^-5	0.741	INTRON CG40470
X	6105094	X_6105094_SNP [dm3] X_6211061_SNP [dm6]	G	A	3.623e^-5	0.741	INTERGENIC
2R	18045677	2R_18045677_SNP [dm3] 2R_22158172_SNP [dm6]	G	A	3.625e^-5	0.741	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7927169	3L_7927169_SNP [dm3] 3L_7934069_SNP [dm6]	T	C	3.645e^-5	0.741	UTR_5_PRIME syd INTRON syd	TF binding site mE1_TFBS_cad
3L	15867267	3L_15867267_SNP [dm3] 3L_15874167_SNP [dm6]	T	G	3.685e^-5	0.741	INTRON pHCl
2R	19260404	2R_19260404_SNP [dm3] 2R_23372881_SNP [dm6]	C	T	3.698e^-5	0.741	NON_SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15193067	2R_15193067_SNP [dm3] 2R_19305562_SNP [dm6]	G	C	3.724e^-5	0.741	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
2R	4525395	2R_4525395_INS [dm3] 2R_8637890_INS [dm6]	T	TAATAAT	3.786e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7107346	2R_7107346_SNP [dm3] 2R_11219841_SNP [dm6]	A	T	3.829e^-5	0.741	UPSTREAM Syx6 & 1 other INTRON Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	3140939	X_3140939_SNP [dm3] X_3246906_SNP [dm6]	A	G	3.845e^-5	0.741	INTRON dnc
3R	7127563	3R_7127563_SNP [dm3] 3R_11301841_SNP [dm6]	A	T	3.912e^-5	0.741	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
2L	16406445	2L_16406445_INS [dm3] 2L_16406445_INS [dm6]	G	GG	4.033e^-5	0.741	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9545814	3L_9545814_SNP [dm3] 3L_9552714_SNP [dm6]	T	A	4.066e^-5	0.741	INTRON CG42673
3L	4512097	3L_4512097_SNP [dm3] 3L_4512097_SNP [dm6]	C	A	4.081e^-5	0.741	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21501348	3L_21501348_DEL [dm3] 3L_21508248_DEL [dm6]	CTG	C	4.092e^-5	0.741	UTR_5_PRIME M6 UPSTREAM Glg1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8658062	2L_8658062_SNP [dm3] 2L_8658062_SNP [dm6]	C	T	4.094e^-5	0.741	INTRON Sema-1a
3L	11934340	3L_11934340_SNP [dm3] 3L_11941240_SNP [dm6]	G	A	4.114e^-5	0.741	UPSTREAM Rpt4R INTERGENIC
3L	21500860	3L_21500860_SNP [dm3] 3L_21507760_SNP [dm6]	C	T	4.114e^-5	0.741	UPSTREAM M6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	10995768	2L_10995768_SNP [dm3] 2L_10995768_SNP [dm6]	A	T	4.125e^-5	0.741	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	21645724	3L_21645724_SNP [dm3] 3L_21652624_SNP [dm6]	G	A	4.135e^-5	0.741	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	21910242	3L_21910242_SNP [dm3] 3L_21917142_SNP [dm6]	C	T	4.167e^-5	0.741	INTRON mub	TF binding site mE1_TFBS_Trl
2L	16440742	2L_16440742_SNP [dm3] 2L_16440742_SNP [dm6]	A	C	4.252e^-5	0.741	INTRON CG5888
2L	6104678	2L_6104678_SNP [dm3] 2L_6104678_SNP [dm6]	A	G	4.266e^-5	0.741	INTRON stai
3R	16886874	3R_16886874_SNP [dm3] 3R_21061152_SNP [dm6]	C	G	4.270e^-5	0.741	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	639457	2R_639457_SNP [dm3] 2R_4751952_SNP [dm6]	G	T	4.317e^-5	0.741	INTRON conu	transposable element FlyBase
3R	21140387	3R_21140387_SNP [dm3] 3R_25314665_SNP [dm6]	C	T	4.336e^-5	0.741	UTR_3_PRIME CG10559 UPSTREAM CG31087
2R	10373100	2R_10373100_SNP [dm3] 2R_14485595_SNP [dm6]	T	C	4.355e^-5	0.741	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17664061	X_17664061_SNP [dm3] X_17770028_SNP [dm6]	G	C	4.384e^-5	0.741	INTRON unc-4
3L	4512104	3L_4512104_SNP [dm3] 3L_4512104_SNP [dm6]	T	A	4.438e^-5	0.743	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10995723	2L_10995723_SNP [dm3] 2L_10995723_SNP [dm6]	G	T	4.656e^-5	0.764	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
3L	17410830	3L_17410830_SNP [dm3] 3L_17417730_SNP [dm6]	T	C	4.729e^-5	0.764	INTRON blot	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3R	19009345	3R_19009345_SNP [dm3] 3R_23183623_SNP [dm6]	G	A	4.783e^-5	0.764	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4706894	X_4706894_SNP [dm3] X_4812861_SNP [dm6]	G	A	4.828e^-5	0.764	INTERGENIC
2R	6740167	2R_6740167_SNP [dm3] 2R_10852662_SNP [dm6]	T	C	4.834e^-5	0.764	UPSTREAM CR45136 INTRON CG30015
3L	10559405	3L_10559405_SNP [dm3] 3L_10566305_SNP [dm6]	G	A	4.865e^-5	0.764	INTRON A2bp1
2R	639977	2R_639977_SNP [dm3] 2R_4752472_SNP [dm6]	G	C	4.934e^-5	0.764	INTRON conu	transposable element FlyBase
3L	24276309	3L_24276309_SNP [dm3] 3L_24283209_SNP [dm6]	A	T	4.975e^-5	0.764	INTRON Snap25
2L	9052025	2L_9052025_SNP [dm3] 2L_9052025_SNP [dm6]	A	C	5.100e^-5	0.764	UTR_3_PRIME CG31708
2R	10373099	2R_10373099_SNP [dm3] 2R_14485594_SNP [dm6]	T	C	5.103e^-5	0.764	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4512094	3L_4512094_SNP [dm3] 3L_4512094_SNP [dm6]	T	A	5.138e^-5	0.764	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	5.156e^-5	0.764	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	5.168e^-5	0.764	INTRON qsm
3L	11368628	3L_11368628_SNP [dm3] 3L_11375528_SNP [dm6]	G	C	5.177e^-5	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11508784	3L_11508784_SNP [dm3] 3L_11515684_SNP [dm6]	C	A	5.249e^-5	0.764	INTRON CG7512
2L	7187631	2L_7187631_SNP [dm3] 2L_7187631_SNP [dm6]	C	T	5.274e^-5	0.764	SYNONYMOUS_CODING CG4496
3L	7951606	3L_7951606_SNP [dm3] 3L_7958506_SNP [dm6]	G	C	5.308e^-5	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17093022	3L_17093022_SNP [dm3] 3L_17099922_SNP [dm6]	G	C	5.312e^-5	0.764	INTRON Rbp6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	2057939	3L_2057939_SNP [dm3] 3L_2057939_SNP [dm6]	C	T	5.334e^-5	0.764	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20470499	X_20470499_SNP [dm3] X_20599472_SNP [dm6]	C	T	5.471e^-5	0.765	INTRON RunxA
3L	21500812	3L_21500812_SNP [dm3] 3L_21507712_SNP [dm6]	A	T	5.526e^-5	0.765	UPSTREAM M6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	18992263	3R_18992263_SNP [dm3] 3R_23166541_SNP [dm6]	C	T	5.533e^-5	0.765	INTERGENIC
3R	7166656	3R_7166656_SNP [dm3] 3R_11340934_SNP [dm6]	A	C	5.533e^-5	0.765	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7951339	3L_7951339_INS [dm3] 3L_7958239_INS [dm6]	C	CC	5.658e^-5	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4512095	3L_4512095_SNP [dm3] 3L_4512095_SNP [dm6]	A	G	5.686e^-5	0.765	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17664033	X_17664033_SNP [dm3] X_17770000_SNP [dm6]	T	A	5.716e^-5	0.765	INTRON unc-4
2L	15246132	2L_15246132_SNP [dm3] 2L_15246132_SNP [dm6]	A	T	5.777e^-5	0.765	UPSTREAM ZnT35C INTRON ZnT35C
2R	6740195	2R_6740195_SNP [dm3] 2R_10852690_SNP [dm6]	T	C	5.858e^-5	0.765	UPSTREAM CR45136 INTRON CG30015
2R	19138652	2R_19138652_SNP [dm3] 2R_23251129_SNP [dm6]	T	A	5.861e^-5	0.765	INTERGENIC
X	2268062	X_2268062_SNP [dm3] X_2374029_SNP [dm6]	A	G	5.882e^-5	0.765	NON_SYNONYMOUS_CODING PsGEF SYNONYMOUS_CODING PsGEF	TF binding site mE1_TFBS_chinmo
2L	10995745	2L_10995745_SNP [dm3] 2L_10995745_SNP [dm6]	T	C	5.899e^-5	0.765	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
X	3731998	X_3731998_DEL [dm3] X_3837965_DEL [dm6]	ATGCCCCA	A	5.927e^-5	0.765	INTRON ec	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9686512	2R_9686512_SNP [dm3] 2R_13799007_SNP [dm6]	C	T	5.947e^-5	0.765	INTRON Cpr50Cb
2L	9062140	2L_9062140_SNP [dm3] 2L_9062140_SNP [dm6]	T	C	5.952e^-5	0.765	INTRON CG31708
2L	7143405	2L_7143405_SNP [dm3] 2L_7143405_SNP [dm6]	G	T	6.067e^-5	0.768	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16406104	2L_16406104_SNP [dm3] 2L_16406104_SNP [dm6]	C	T	6.082e^-5	0.768	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9186936	2L_9186936_SNP [dm3] 2L_9186936_SNP [dm6]	T	A	6.105e^-5	0.768	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17103381	2R_17103381_SNP [dm3] 2R_21215876_SNP [dm6]	T	A	6.227e^-5	0.779	SYNONYMOUS_CODING CG15661 UPSTREAM CG4302
2L	10995524	2L_10995524_SNP [dm3] 2L_10995524_SNP [dm6]	G	T	6.345e^-5	0.781	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	2712149	2L_2712149_SNP [dm3] 2L_2712149_SNP [dm6]	T	C	6.433e^-5	0.781	INTRON CG31690	TF binding site mE1_TFBS_chinmo
3R	25909492	3R_25909492_SNP [dm3] 3R_30083770_SNP [dm6]	G	A	6.537e^-5	0.781	INTRON sima
3L	5902539	3L_5902539_SNP [dm3] 3L_5909439_SNP [dm6]	A	G	6.540e^-5	0.781	SYNONYMOUS_CODING CG13288
3R	16325857	3R_16325857_SNP [dm3] 3R_20500135_SNP [dm6]	T	G	6.632e^-5	0.781	SYNONYMOUS_CODING Dic2
X	8363186	X_8363186_SNP [dm3] X_8469153_SNP [dm6]	A	G	6.648e^-5	0.781	UPSTREAM CG12116 INTRON CG33223
3L	10560160	3L_10560160_SNP [dm3] 3L_10567060_SNP [dm6]	C	A	6.703e^-5	0.781	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10174837	3L_10174837_SNP [dm3] 3L_10181737_SNP [dm6]	T	A	6.733e^-5	0.781	INTRON dpr10
3R	22945176	3R_22945176_SNP [dm3] 3R_27119454_SNP [dm6]	A	C	6.737e^-5	0.781	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG5880	TF binding site mE1_TFBS_cad
2R	631165	2R_631165_SNP [dm3] 2R_4743660_SNP [dm6]	A	C	6.743e^-5	0.781	UPSTREAM conu INTERGENIC
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	6.807e^-5	0.781	INTRON Con
X	17664276	X_17664276_DEL [dm3] X_17770243_DEL [dm6]	AAAAAAAGTGTTAAGG...	A	6.837e^-5	0.781	INTRON unc-4
X	21211807	X_21211807_SNP [dm3] X_21340780_SNP [dm6]	G	A	6.903e^-5	0.781	NON_SYNONYMOUS_CODING fliI	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10559869	3L_10559869_SNP [dm3] 3L_10566769_SNP [dm6]	C	A	7.090e^-5	0.781	INTRON A2bp1	TF binding site mE1_TFBS_inv
3R	6999443	3R_6999443_SNP [dm3] 3R_11173721_SNP [dm6]	G	C	7.162e^-5	0.781	NON_SYNONYMOUS_CODING Ugt86Dj
X	6036927	X_6036927_SNP [dm3] X_6142894_SNP [dm6]	A	T	7.169e^-5	0.781	INTRON Ca-alpha1T
2R	619835	2R_619835_SNP [dm3] 2R_4732330_SNP [dm6]	G	A	7.262e^-5	0.781	DOWNSTREAM CR45471 EXON CR41440
3R	25909499	3R_25909499_DEL [dm3] 3R_30083777_DEL [dm6]	ATGTGAACCA	A	7.271e^-5	0.781	INTRON sima
2R	14035900	2R_14035900_SNP [dm3] 2R_18148395_SNP [dm6]	T	G	7.362e^-5	0.781	UTR_3_PRIME CG5742 UPSTREAM CG17680 DOWNSTREAM CG5742	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16879705	2R_16879705_SNP [dm3] 2R_20992200_SNP [dm6]	T	A	7.422e^-5	0.781	DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8803768	2R_8803768_SNP [dm3] 2R_12916263_SNP [dm6]	G	C	7.471e^-5	0.781	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8490414	2R_8490414_SNP [dm3] 2R_12602909_SNP [dm6]	T	C	7.502e^-5	0.781	INTRON Amph
2L	13226928	2L_13226928_SNP [dm3] 2L_13226928_SNP [dm6]	C	T	7.506e^-5	0.781	UPSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	19506094	2R_19506094_SNP [dm3] 2R_23618571_SNP [dm6]	G	A	7.549e^-5	0.781	INTERGENIC
2R	14035503	2R_14035503_SNP [dm3] 2R_18147998_SNP [dm6]	C	T	7.613e^-5	0.781	UPSTREAM CG17680 DOWNSTREAM CG5742 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10711384	2L_10711384_SNP [dm3] 2L_10711384_SNP [dm6]	A	G	7.695e^-5	0.781	DOWNSTREAM CR44407 INTERGENIC
3R	7000831	3R_7000831_SNP [dm3] 3R_11175109_SNP [dm6]	T	C	7.695e^-5	0.781	UPSTREAM Ugt86Dh INTRON Ugt86Dj
3L	10559328	3L_10559328_SNP [dm3] 3L_10566228_SNP [dm6]	T	A	7.697e^-5	0.781	INTRON A2bp1
3L	19515108	3L_19515108_SNP [dm3] 3L_19522008_SNP [dm6]	C	T	7.763e^-5	0.781	INTRON Cpr76Bc
2R	15193193	2R_15193193_SNP [dm3] 2R_19305688_SNP [dm6]	G	A	7.776e^-5	0.781	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3L	20772789	3L_20772789_SNP [dm3] 3L_20779689_SNP [dm6]	G	A	7.779e^-5	0.781	SYNONYMOUS_CODING Pex14 DOWNSTREAM CG11399	TF binding site BDTNP1_TFBS_dl
X	18993921	X_18993921_SNP [dm3] X_19099888_SNP [dm6]	T	A	7.827e^-5	0.781	INTERGENIC
3L	10174770	3L_10174770_SNP [dm3] 3L_10181670_SNP [dm6]	A	C	7.849e^-5	0.781	INTRON dpr10
3L	2556885	3L_2556885_SNP [dm3] 3L_2556885_SNP [dm6]	A	T	7.887e^-5	0.781	INTRON msn	TF binding site mE1_TFBS_sens
2R	15193070	2R_15193070_SNP [dm3] 2R_19305565_SNP [dm6]	C	G	7.900e^-5	0.781	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_sens
3R	18992272	3R_18992272_SNP [dm3] 3R_23166550_SNP [dm6]	G	A	7.904e^-5	0.781	INTERGENIC
2L	15763129	2L_15763129_SNP [dm3] 2L_15763129_SNP [dm6]	T	A	7.921e^-5	0.781	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2556932	3L_2556932_SNP [dm3] 3L_2556932_SNP [dm6]	G	A	7.928e^-5	0.781	INTRON msn	TF binding site mE1_TFBS_sens
2R	3042597	2R_3042597_SNP [dm3] 2R_7155092_SNP [dm6]	G	T	7.961e^-5	0.781	SYNONYMOUS_CODING Spn43Ad INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19620001	3R_19620001_SNP [dm3] 3R_23794279_SNP [dm6]	C	T	8.020e^-5	0.781	INTRON mbc
2R	639567	2R_639567_SNP [dm3] 2R_4752062_SNP [dm6]	A	G	8.066e^-5	0.781	INTRON conu
3R	11258893	3R_11258893_SNP [dm3] 3R_15433171_SNP [dm6]	G	T	8.081e^-5	0.781	INTRON CG6118
3L	21915282	3L_21915282_SNP [dm3] 3L_21922182_SNP [dm6]	C	T	8.119e^-5	0.781	INTRON mub
3R	7159039	3R_7159039_SNP [dm3] 3R_11333317_SNP [dm6]	C	T	8.136e^-5	0.781	START_GAINED pros UTR_5_PRIME pros INTRON pros
2L	13226911	2L_13226911_SNP [dm3] 2L_13226911_SNP [dm6]	A	G	8.142e^-5	0.781	UPSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	12991563	X_12991563_SNP [dm3] X_13097530_SNP [dm6]	G	A	8.233e^-5	0.781	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17410869	3L_17410869_SNP [dm3] 3L_17417769_SNP [dm6]	G	A	8.258e^-5	0.781	INTRON blot	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2R	16532257	2R_16532257_SNP [dm3] 2R_20644752_SNP [dm6]	C	T	8.346e^-5	0.781	UPSTREAM CG33785 & 1 other INTRON DMAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
3L	18008981	3L_18008981_SNP [dm3] 3L_18015881_SNP [dm6]	A	G	8.346e^-5	0.781	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3973340	3R_3973340_INS [dm3] 3R_8147618_INS [dm6]	A	AA	8.358e^-5	0.781	UTR_3_PRIME grn
2L	515666	2L_515666_SNP [dm3] 2L_515666_SNP [dm6]	A	G	8.396e^-5	0.781	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4273729	X_4273729_SNP [dm3] X_4379696_SNP [dm6]	C	T	8.422e^-5	0.781	INTERGENIC
X	3140892	X_3140892_SNP [dm3] X_3246859_SNP [dm6]	G	C	8.454e^-5	0.781	INTRON dnc
X	15358761	X_15358761_SNP [dm3] X_15464728_SNP [dm6]	G	A	8.596e^-5	0.781	UTR_5_PRIME CG6299 UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3L	23524138	3L_23524138_SNP [dm3] 3L_23531038_SNP [dm6]	G	C	8.636e^-5	0.781	INTERGENIC	transposable element FlyBase
2L	10155413	2L_10155413_SNP [dm3] 2L_10155413_SNP [dm6]	A	T	8.639e^-5	0.781	UTR_3_PRIME CG4839 INTRON CG44153
X	12865951	X_12865951_SNP [dm3] X_12971918_SNP [dm6]	A	T	8.650e^-5	0.781	SYNONYMOUS_CODING CG15721 INTRON CR43636
3L	15392388	3L_15392388_SNP [dm3] 3L_15399288_SNP [dm6]	T	A	8.664e^-5	0.781	INTERGENIC
3L	21915333	3L_21915333_SNP [dm3] 3L_21922233_SNP [dm6]	A	T	8.805e^-5	0.79	INTRON mub
3L	7003316	3L_7003316_SNP [dm3] 3L_7010216_SNP [dm6]	A	G	8.950e^-5	0.799	INTRON Mp
3L	10576481	3L_10576481_DEL [dm3] 3L_10583381_DEL [dm6]	GATG	G	9.089e^-5	0.802	INTRON A2bp1
3R	23003425	3R_23003425_SNP [dm3] 3R_27177703_SNP [dm6]	T	C	9.106e^-5	0.802	INTRON Ser	TF binding site mE1_TFBS_cad
X	14763396	X_14763396_INS [dm3] X_14869363_INS [dm6]	A	ATTCA	9.173e^-5	0.802	INTRON Flo2 & 1 other
2L	9380726	2L_9380726_SNP [dm3] 2L_9380726_SNP [dm6]	A	T	9.303e^-5	0.802	INTRON Shawl
2L	15763139	2L_15763139_SNP [dm3] 2L_15763139_SNP [dm6]	G	T	9.320e^-5	0.802	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5909449	2L_5909449_SNP [dm3] 2L_5909449_SNP [dm6]	T	G	9.327e^-5	0.802	NON_SYNONYMOUS_CODING CG14000 INTRON bchs
3R	23003416	3R_23003416_DEL [dm3] 3R_27177694_DEL [dm6]	ATA	A	9.347e^-5	0.802	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003431	3R_23003431_SNP [dm3] 3R_27177709_SNP [dm6]	T	G	9.347e^-5	0.802	INTRON Ser	TF binding site mE1_TFBS_cad
3R	23003397	3R_23003397_SNP [dm3] 3R_27177675_SNP [dm6]	C	A	9.397e^-5	0.802	INTRON Ser	TF binding site mE1_TFBS_cad
X	17664526	X_17664526_SNP [dm3] X_17770493_SNP [dm6]	A	G	9.413e^-5	0.802	INTRON unc-4
2L	12312809	2L_12312809_SNP [dm3] 2L_12312809_SNP [dm6]	T	C	9.480e^-5	0.805	UTR_3_PRIME aret DOWNSTREAM aret
2L	6370055	2L_6370055_SNP [dm3] 2L_6370055_SNP [dm6]	G	A	9.565e^-5	0.805	NON_SYNONYMOUS_CODING CG9505	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7754146	3L_7754146_SNP [dm3] 3L_7761046_SNP [dm6]	A	G	9.616e^-5	0.805	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
3L	4490329	3L_4490329_SNP [dm3] 3L_4490329_SNP [dm6]	A	G	9.636e^-5	0.805	INTRON CG13722
3R	13430168	3R_13430168_DEL [dm3] 3R_17604446_DEL [dm6]	CC	C	9.669e^-5	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	23489054	3L_23489054_SNP [dm3] 3L_23495954_SNP [dm6]	T	C	9.706e^-5	0.805	INTERGENIC	transposable element FlyBase
2R	6758442	2R_6758442_SNP [dm3] 2R_10870937_SNP [dm6]	C	T	9.803e^-5	0.809	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3141337	X_3141337_SNP [dm3] X_3247304_SNP [dm6]	A	T	9.867e^-5	0.809	INTRON dnc
2R	4074894	2R_4074894_SNP [dm3] 2R_8187389_SNP [dm6]	A	G	9.900e^-5	0.809	INTRON LRP1
X	6489687	X_6489687_SNP [dm3] X_6595654_SNP [dm6]	T	C	9.997e^-5	0.809	NON_SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17664555	X_17664555_DEL [dm3] X_17770522_DEL [dm6]	TC	T	1.005e^-4	0.809	INTRON unc-4
3L	1408950	3L_1408950_SNP [dm3] 3L_1408950_SNP [dm6]	T	C	1.025e^-4	0.809	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6740078	2R_6740078_SNP [dm3] 2R_10852573_SNP [dm6]	A	G	1.028e^-4	0.809	UPSTREAM CR45136 INTRON CG30015
3R	17375670	3R_17375670_SNP [dm3] 3R_21549948_SNP [dm6]	C	T	1.029e^-4	0.809	INTRON slou
3L	15865896	3L_15865896_DEL [dm3] 3L_15872796_DEL [dm6]	CTCAC	C	1.030e^-4	0.809	INTRON pHCl
3L	24284107	3L_24284107_SNP [dm3] 3L_24291007_SNP [dm6]	A	T	1.036e^-4	0.809	UPSTREAM CR45159 INTRON Snap25
3L	24284117	3L_24284117_SNP [dm3] 3L_24291017_SNP [dm6]	T	G	1.036e^-4	0.809	UPSTREAM CR45159 INTRON Snap25
X	12876161	X_12876161_SNP [dm3] X_12982128_SNP [dm6]	A	G	1.042e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20031355	3L_20031355_SNP [dm3] 3L_20038255_SNP [dm6]	A	G	1.046e^-4	0.809	INTERGENIC
3L	15354692	3L_15354692_DEL [dm3] 3L_15361592_DEL [dm6]	TT	T	1.059e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	23064011	3R_23064011_SNP [dm3] 3R_27238289_SNP [dm6]	C	A	1.071e^-4	0.809	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	7753664	3L_7753664_SNP [dm3] 3L_7760564_SNP [dm6]	A	G	1.078e^-4	0.809	UTR_5_PRIME Hn UPSTREAM Hn
3R	26485843	3R_26485843_SNP [dm3] 3R_30660121_SNP [dm6]	C	T	1.082e^-4	0.809	INTERGENIC
3R	7000596	3R_7000596_SNP [dm3] 3R_11174874_SNP [dm6]	G	A	1.087e^-4	0.809	SYNONYMOUS_CODING Ugt86Dj UPSTREAM Ugt86Dh
3L	24287914	3L_24287914_SNP [dm3] 3L_24294814_SNP [dm6]	A	T	1.093e^-4	0.809	INTRON Snap25
3R	23064193	3R_23064193_SNP [dm3] 3R_27238471_SNP [dm6]	G	A	1.097e^-4	0.809	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15361597	3L_15361597_SNP [dm3] 3L_15368497_SNP [dm6]	A	G	1.097e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	8094600	3R_8094600_SNP [dm3] 3R_12268878_SNP [dm6]	T	C	1.117e^-4	0.809	INTRON svp EXON CR44039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9404267	2R_9404267_SNP [dm3] 2R_13516762_SNP [dm6]	A	G	1.118e^-4	0.809	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad
3R	3503623	3R_3503623_SNP [dm3] 3R_7677901_SNP [dm6]	C	T	1.118e^-4	0.809	INTRON Nlg1
X	3140872	X_3140872_DEL [dm3] X_3246839_DEL [dm6]	TCCCATTTAAAATCTCA...	T	1.123e^-4	0.809	INTRON dnc
3R	23003429	3R_23003429_SNP [dm3] 3R_27177707_SNP [dm6]	A	C	1.123e^-4	0.809	INTRON Ser	TF binding site mE1_TFBS_cad
3L	24246214	3L_24246214_SNP [dm3] 3L_24253114_SNP [dm6]	G	T	1.128e^-4	0.809	INTRON Snap25
2L	3271695	2L_3271695_SNP [dm3] 2L_3271695_SNP [dm6]	C	G	1.129e^-4	0.809	UTR_3_PRIME CG3347
X	6167713	X_6167713_SNP [dm3] X_6273680_SNP [dm6]	C	T	1.132e^-4	0.809	SYNONYMOUS_CODING Spt6	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7754480	3L_7754480_SNP [dm3] 3L_7761380_SNP [dm6]	A	G	1.138e^-4	0.809	UTR_5_PRIME Hn INTRON Hn
3L	10743045	3L_10743045_SNP [dm3] 3L_10749945_SNP [dm6]	T	A	1.140e^-4	0.809	INTERGENIC
3R	21140378	3R_21140378_DEL [dm3] 3R_25314656_DEL [dm6]	AA	A	1.142e^-4	0.809	UTR_3_PRIME CG10559 UPSTREAM CG31087
3R	21140385	3R_21140385_INS [dm3] 3R_25314663_INS [dm6]	A	ATATTCATCAAAAAAAGTGC...	1.142e^-4	0.809	UTR_3_PRIME CG10559 UPSTREAM CG31087
3L	6057307	3L_6057307_SNP [dm3] 3L_6064207_SNP [dm6]	A	G	1.144e^-4	0.809	INTERGENIC
2L	9346044	2L_9346044_SNP [dm3] 2L_9346044_SNP [dm6]	C	T	1.159e^-4	0.809	INTERGENIC
X	5020892	X_5020892_SNP [dm3] X_5126859_SNP [dm6]	T	C	1.168e^-4	0.809	INTRON rg & 1 other
2R	18050205	2R_18050205_SNP [dm3] 2R_22162700_SNP [dm6]	C	G	1.171e^-4	0.809	INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10560649	3L_10560649_SNP [dm3] 3L_10567549_SNP [dm6]	A	G	1.175e^-4	0.809	INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	9061279	2L_9061279_SNP [dm3] 2L_9061279_SNP [dm6]	T	A	1.175e^-4	0.809	INTRON CG31708	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7951317	3L_7951317_SNP [dm3] 3L_7958217_SNP [dm6]	C	T	1.178e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16878163	3R_16878163_SNP [dm3] 3R_21052441_SNP [dm6]	G	C	1.179e^-4	0.809	DOWNSTREAM Mvl INTRON Mvl
3L	24295097	3L_24295097_SNP [dm3] 3L_24301997_SNP [dm6]	T	A	1.179e^-4	0.809	INTERGENIC
2R	6776241	2R_6776241_SNP [dm3] 2R_10888736_SNP [dm6]	G	A	1.181e^-4	0.809	SYNONYMOUS_CODING CG30020	TF binding site mE1_TFBS_cad
3L	17188663	3L_17188663_SNP [dm3] 3L_17195563_SNP [dm6]	C	T	1.185e^-4	0.809	INTRON Rbp6	TF binding site mE1_TFBS_inv
X	6105106	X_6105106_SNP [dm3] X_6211073_SNP [dm6]	C	T	1.186e^-4	0.809	INTERGENIC
X	6105107	X_6105107_SNP [dm3] X_6211074_SNP [dm6]	A	T	1.186e^-4	0.809	INTERGENIC
X	5260235	X_5260235_SNP [dm3] X_5366202_SNP [dm6]	G	A	1.189e^-4	0.809	INTRON SK
3R	13430181	3R_13430181_SNP [dm3] 3R_17604459_SNP [dm6]	C	T	1.191e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6514626	2L_6514626_SNP [dm3] 2L_6514626_SNP [dm6]	G	A	1.196e^-4	0.809	INTRON CG31637
2L	20638141	2L_20638141_SNP [dm3] 2L_20638141_SNP [dm6]	G	T	1.196e^-4	0.809	UPSTREAM CR43158 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA transposable element FlyBase
X	17664316	X_17664316_SNP [dm3] X_17770283_SNP [dm6]	A	C	1.203e^-4	0.809	INTRON unc-4
3L	24185894	3L_24185894_SNP [dm3] 3L_24192794_SNP [dm6]	T	C	1.208e^-4	0.809	INTRON Snap25
2L	5112218	2L_5112218_SNP [dm3] 2L_5112218_SNP [dm6]	A	T	1.208e^-4	0.809	INTRON Msp300
2L	19821808	2L_19821808_SNP [dm3] 2L_19821808_SNP [dm6]	A	G	1.209e^-4	0.809	INTRON sick
2R	10344154	2R_10344154_SNP [dm3] 2R_14456649_SNP [dm6]	C	A	1.213e^-4	0.809	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24284367	3L_24284367_SNP [dm3] 3L_24291267_SNP [dm6]	A	T	1.219e^-4	0.809	UPSTREAM CR45159 INTRON Snap25
2L	15763051	2L_15763051_INS [dm3] 2L_15763051_INS [dm6]	A	AA	1.223e^-4	0.809	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1975420	3R_1975420_SNP [dm3] 3R_6149698_SNP [dm6]	C	A	1.225e^-4	0.809	DOWNSTREAM CG31559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	24369409	3R_24369409_SNP [dm3] 3R_28543687_SNP [dm6]	C	T	1.232e^-4	0.809	INTRON CG12413
X	12865993	X_12865993_SNP [dm3] X_12971960_SNP [dm6]	C	T	1.233e^-4	0.809	SYNONYMOUS_CODING CG15721 INTRON CR43636
2R	6740115	2R_6740115_SNP [dm3] 2R_10852610_SNP [dm6]	T	G	1.239e^-4	0.809	UPSTREAM CR45136 INTRON CG30015
3L	24275189	3L_24275189_INS [dm3] 3L_24282089_INS [dm6]	A	AT	1.249e^-4	0.811	INTRON Snap25
X	17664059	X_17664059_SNP [dm3] X_17770026_SNP [dm6]	A	G	1.259e^-4	0.811	INTRON unc-4
X	12876135	X_12876135_SNP [dm3] X_12982102_SNP [dm6]	G	A	1.261e^-4	0.811	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14907995	3L_14907995_SNP [dm3] 3L_14914895_SNP [dm6]	G	C	1.261e^-4	0.811	INTRON DCX-EMAP
2L	14573412	2L_14573412_SNP [dm3] 2L_14573412_SNP [dm6]	A	T	1.269e^-4	0.811	INTERGENIC
2R	6916449	2R_6916449_SNP [dm3] 2R_11028944_SNP [dm6]	G	A	1.276e^-4	0.811	INTRON luna
2R	10544301	2R_10544301_SNP [dm3] 2R_14656796_SNP [dm6]	G	A	1.277e^-4	0.811	DOWNSTREAM Adgf-E INTERGENIC
3R	22931531	3R_22931531_SNP [dm3] 3R_27105809_SNP [dm6]	T	C	1.281e^-4	0.811	INTRON CG6074
3L	11368623	3L_11368623_SNP [dm3] 3L_11375523_SNP [dm6]	A	G	1.283e^-4	0.811	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19357878	X_19357878_SNP [dm3] X_19463845_SNP [dm6]	C	T	1.284e^-4	0.811	INTRON kek5
X	17021417	X_17021417_SNP [dm3] X_17127384_SNP [dm6]	A	C	1.299e^-4	0.812	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
2L	14063758	2L_14063758_SNP [dm3] 2L_14063758_SNP [dm6]	A	T	1.305e^-4	0.812	INTRON nAChRalpha5
3L	11395036	3L_11395036_SNP [dm3] 3L_11401936_SNP [dm6]	T	A	1.313e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16454405	2R_16454405_SNP [dm3] 2R_20566900_SNP [dm6]	T	G	1.316e^-4	0.812	INTRON qsm
2L	11230312	2L_11230312_DEL [dm3] 2L_11230312_DEL [dm6]	GTAGTGGCCATATAGTC...	G	1.317e^-4	0.812	INTRON ab
3R	20302456	3R_20302456_SNP [dm3] 3R_24476734_SNP [dm6]	A	C	1.320e^-4	0.812	INTERGENIC
3R	17376553	3R_17376553_INS [dm3] 3R_21550831_INS [dm6]	A	AT	1.320e^-4	0.812	INTRON slou
X	17664545	X_17664545_SNP [dm3] X_17770512_SNP [dm6]	C	T	1.329e^-4	0.812	INTRON unc-4
2R	19971973	2R_19971973_SNP [dm3] 2R_24084450_SNP [dm6]	G	A	1.332e^-4	0.812	SYNONYMOUS_CODING CG16786
3L	14907356	3L_14907356_SNP [dm3] 3L_14914256_SNP [dm6]	A	G	1.334e^-4	0.812	INTRON DCX-EMAP
2R	14885710	2R_14885710_SNP [dm3] 2R_18998205_SNP [dm6]	G	A	1.335e^-4	0.812	NON_SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8245991	2L_8245991_SNP [dm3] 2L_8245991_SNP [dm6]	C	G	1.339e^-4	0.812	SYNONYMOUS_CODING CG8086 INTRON CG8086
3R	24373629	3R_24373629_SNP [dm3] 3R_28547907_SNP [dm6]	A	T	1.354e^-4	0.814	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17664008	X_17664008_SNP [dm3] X_17769975_SNP [dm6]	G	A	1.360e^-4	0.814	INTRON unc-4
2R	624512	2R_624512_SNP [dm3] 2R_4737007_SNP [dm6]	A	G	1.360e^-4	0.814	INTERGENIC
3L	14094622	3L_14094622_SNP [dm3] 3L_14101522_SNP [dm6]	A	G	1.366e^-4	0.814	INTERGENIC
3R	19009049	3R_19009049_SNP [dm3] 3R_23183327_SNP [dm6]	A	C	1.376e^-4	0.814	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11923842	3L_11923842_SNP [dm3] 3L_11930742_SNP [dm6]	C	G	1.379e^-4	0.814	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7754559	3L_7754559_SNP [dm3] 3L_7761459_SNP [dm6]	T	A	1.383e^-4	0.814	UTR_5_PRIME Hn INTRON Hn
3R	20353981	3R_20353981_SNP [dm3] 3R_24528259_SNP [dm6]	G	A	1.387e^-4	0.814	DOWNSTREAM CG13618 INTRON CG6607	TF binding site mE1_TFBS_cad
2L	3060489	2L_3060489_SNP [dm3] 2L_3060489_SNP [dm6]	T	G	1.389e^-4	0.814	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2266926	X_2266926_SNP [dm3] X_2372893_SNP [dm6]	C	T	1.394e^-4	0.814	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo
3L	15133331	3L_15133331_SNP [dm3] 3L_15140231_SNP [dm6]	C	A	1.396e^-4	0.814	INTRON Pdi	TF binding site BDTNP1_TFBS_dl
3L	15865251	3L_15865251_DEL [dm3] 3L_15872151_DEL [dm6]	AAAACTGAAGAATA...	A	1.398e^-4	0.814	INTRON pHCl
3R	18037554	3R_18037554_SNP [dm3] 3R_22211832_SNP [dm6]	C	A	1.398e^-4	0.814	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP
X	17664572	X_17664572_INS [dm3] X_17770539_INS [dm6]	G	GC	1.413e^-4	0.814	INTRON unc-4
X	12876152	X_12876152_SNP [dm3] X_12982119_SNP [dm6]	T	G	1.414e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11120080	3L_11120080_SNP [dm3] 3L_11126980_SNP [dm6]	T	A	1.421e^-4	0.814	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	7159060	3R_7159060_SNP [dm3] 3R_11333338_SNP [dm6]	T	C	1.422e^-4	0.814	UTR_5_PRIME pros INTRON pros
X	13061739	X_13061739_SNP [dm3] X_13167706_SNP [dm6]	T	A	1.433e^-4	0.814	INTRON CG34411
2R	16198113	2R_16198113_SNP [dm3] 2R_20310608_SNP [dm6]	C	G	1.444e^-4	0.814	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3581268	3L_3581268_SNP [dm3] 3L_3581268_SNP [dm6]	C	T	1.444e^-4	0.814	INTRON Eip63E
3L	3581269	3L_3581269_SNP [dm3] 3L_3581269_SNP [dm6]	T	C	1.444e^-4	0.814	INTRON Eip63E
3L	21866382	3L_21866382_SNP [dm3] 3L_21873282_SNP [dm6]	T	C	1.451e^-4	0.814	INTRON mub
2L	20948166	2L_20948166_SNP [dm3] 2L_20948166_SNP [dm6]	A	G	1.452e^-4	0.814	EXON CR44606
2R	628616	2R_628616_SNP [dm3] 2R_4741111_SNP [dm6]	A	C	1.458e^-4	0.814	INTERGENIC	transposable element FlyBase
2L	14420113	2L_14420113_SNP [dm3] 2L_14420113_SNP [dm6]	A	G	1.459e^-4	0.814	INTERGENIC
2L	14407851	2L_14407851_SNP [dm3] 2L_14407851_SNP [dm6]	A	G	1.464e^-4	0.814	INTRON elB
2L	14419350	2L_14419350_SNP [dm3] 2L_14419350_SNP [dm6]	T	A	1.468e^-4	0.814	INTERGENIC
X	3140901	X_3140901_DEL [dm3] X_3246868_DEL [dm6]	TT	T	1.475e^-4	0.814	INTRON dnc
2R	639021	2R_639021_SNP [dm3] 2R_4751516_SNP [dm6]	T	A	1.487e^-4	0.814	INTRON conu
2L	6990084	2L_6990084_SNP [dm3] 2L_6990084_SNP [dm6]	A	G	1.496e^-4	0.814	INTRON uif
2L	20511982	2L_20511982_SNP [dm3] 2L_20511982_SNP [dm6]	T	C	1.496e^-4	0.814	INTERGENIC
2L	4300461	2L_4300461_SNP [dm3] 2L_4300461_SNP [dm6]	A	G	1.497e^-4	0.814	INTRON tutl
2L	5999935	2L_5999935_SNP [dm3] 2L_5999935_SNP [dm6]	C	T	1.498e^-4	0.814	UPSTREAM Tsp26A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17350956	3R_17350956_SNP [dm3] 3R_21525234_SNP [dm6]	A	G	1.507e^-4	0.814	NON_SYNONYMOUS_CODING CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
X	4786069	X_4786069_DEL [dm3] X_4892036_DEL [dm6]	TGCACAGCTTCTCAGC...	AT	1.508e^-4	0.814	INTRON CG42594
2L	9051929	2L_9051929_SNP [dm3] 2L_9051929_SNP [dm6]	G	T	1.509e^-4	0.814	UTR_3_PRIME CG31708
X	2501524	X_2501524_SNP [dm3] X_2607491_SNP [dm6]	G	A	1.509e^-4	0.814	SYNONYMOUS_CODING Bzd DOWNSTREAM Zw10	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	19569491	3R_19569491_SNP [dm3] 3R_23743769_SNP [dm6]	T	A	1.510e^-4	0.814	INTRON Hmgcr
2R	16908846	2R_16908846_SNP [dm3] 2R_21021341_SNP [dm6]	G	C	1.510e^-4	0.814	INTRON RIC-3
2R	7021008	2R_7021008_SNP [dm3] 2R_11133503_SNP [dm6]	C	T	1.516e^-4	0.814	INTERGENIC
3L	23585316	3L_23585316_SNP [dm3] 3L_23592216_SNP [dm6]	G	C	1.519e^-4	0.814	INTRON AGO3
2L	10995643	2L_10995643_INS [dm3] 2L_10995643_INS [dm6]	A	AA	1.532e^-4	0.814	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
X	12364865	X_12364865_SNP [dm3] X_12470832_SNP [dm6]	C	A	1.536e^-4	0.814	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15390375	3L_15390375_DEL [dm3] 3L_15397275_DEL [dm6]	GAAATAG	G	1.539e^-4	0.814	INTERGENIC
2L	7216648	2L_7216648_SNP [dm3] 2L_7216648_SNP [dm6]	T	C	1.539e^-4	0.814	INTRON CG13784
X	12875113	X_12875113_SNP [dm3] X_12981080_SNP [dm6]	A	G	1.542e^-4	0.814	INTERGENIC
3L	2409653	3L_2409653_SNP [dm3] 3L_2409653_SNP [dm6]	C	T	1.549e^-4	0.814	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	5112172	2L_5112172_SNP [dm3] 2L_5112172_SNP [dm6]	C	T	1.549e^-4	0.814	INTRON Msp300
X	11068477	X_11068477_SNP [dm3] X_11174444_SNP [dm6]	C	T	1.555e^-4	0.814	INTERGENIC
2L	8695949	2L_8695949_SNP [dm3] 2L_8695949_SNP [dm6]	G	C	1.557e^-4	0.814	INTRON Hnf4
X	10326282	X_10326282_INS [dm3] X_10432249_INS [dm6]	A	AT	1.570e^-4	0.814	DOWNSTREAM CG12640 INTRON CG32683
3L	9964750	3L_9964750_SNP [dm3] 3L_9971650_SNP [dm6]	G	T	1.572e^-4	0.814	UPSTREAM vnc & 1 other DOWNSTREAM Nc INTRON CG6674	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	3140992	X_3140992_SNP [dm3] X_3246959_SNP [dm6]	G	T	1.581e^-4	0.814	INTRON dnc
X	13127204	X_13127204_SNP [dm3] X_13233171_SNP [dm6]	C	G	1.585e^-4	0.814	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17628117	3R_17628117_SNP [dm3] 3R_21802395_SNP [dm6]	C	G	1.591e^-4	0.814	INTRON CASK	TF binding site BDTNP1_TFBS_twi
X	12991530	X_12991530_SNP [dm3] X_13097497_SNP [dm6]	C	A	1.593e^-4	0.814	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16891880	3R_16891880_SNP [dm3] 3R_21066158_SNP [dm6]	A	C	1.599e^-4	0.814	INTRON AnxB9	TF binding site mE1_TFBS_Trl
X	6495896	X_6495896_SNP [dm3] X_6601863_SNP [dm6]	A	C	1.601e^-4	0.814	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	14420187	2L_14420187_DEL [dm3] 2L_14420187_DEL [dm6]	ATTGTA	A	1.602e^-4	0.814	INTERGENIC
X	5260641	X_5260641_SNP [dm3] X_5366608_SNP [dm6]	C	G	1.606e^-4	0.814	INTRON SK
2R	628373	2R_628373_SNP [dm3] 2R_4740868_SNP [dm6]	G	T	1.609e^-4	0.814	INTERGENIC	transposable element FlyBase
X	6489465	X_6489465_SNP [dm3] X_6595432_SNP [dm6]	A	G	1.612e^-4	0.814	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv
2L	16744080	2L_16744080_SNP [dm3] 2L_16744080_SNP [dm6]	C	A	1.615e^-4	0.814	UPSTREAM LSm7 INTRON CG17912	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3418890	3L_3418890_SNP [dm3] 3L_3418890_SNP [dm6]	C	G	1.634e^-4	0.819	UPSTREAM sty INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4339710	2L_4339710_SNP [dm3] 2L_4339710_SNP [dm6]	T	A	1.661e^-4	0.819	INTRON Atet	TF binding site mE1_TFBS_inv
2L	4339715	2L_4339715_SNP [dm3] 2L_4339715_SNP [dm6]	A	T	1.661e^-4	0.819	INTRON Atet	TF binding site mE1_TFBS_inv
3R	10147880	3R_10147880_SNP [dm3] 3R_14322158_SNP [dm6]	C	G	1.667e^-4	0.819	SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10802300	X_10802300_SNP [dm3] X_10908267_SNP [dm6]	G	A	1.669e^-4	0.819	SYNONYMOUS_CODING CG43901	TF binding site mE1_TFBS_sens
2L	5962958	2L_5962958_DEL [dm3] 2L_5962958_DEL [dm6]	AG	A	1.676e^-4	0.819	DOWNSTREAM psd INTERGENIC
2L	15245948	2L_15245948_SNP [dm3] 2L_15245948_SNP [dm6]	T	C	1.680e^-4	0.819	UTR_5_PRIME ZnT35C INTRON ZnT35C
3L	9933992	3L_9933992_SNP [dm3] 3L_9940892_SNP [dm6]	A	C	1.681e^-4	0.819	INTRON CG34356
3R	18967135	3R_18967135_SNP [dm3] 3R_23141413_SNP [dm6]	C	T	1.685e^-4	0.819	NON_SYNONYMOUS_CODING hh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17823107	3R_17823107_SNP [dm3] 3R_21997385_SNP [dm6]	C	A	1.685e^-4	0.819	INTRON Eip93F
3L	21727059	3L_21727059_SNP [dm3] 3L_21733959_SNP [dm6]	G	A	1.687e^-4	0.819	UPSTREAM CG14573 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	7753885	3L_7753885_SNP [dm3] 3L_7760785_SNP [dm6]	G	A	1.695e^-4	0.819	UPSTREAM Hn INTRON Hn
3R	11235989	3R_11235989_SNP [dm3] 3R_15410267_SNP [dm6]	T	A	1.701e^-4	0.819	UPSTREAM Atx2 INTRON Atx2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	4273771	X_4273771_SNP [dm3] X_4379738_SNP [dm6]	T	C	1.710e^-4	0.819	INTERGENIC
2R	8576022	2R_8576022_SNP [dm3] 2R_12688517_SNP [dm6]	A	G	1.718e^-4	0.819	SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12308165	2L_12308165_SNP [dm3] 2L_12308165_SNP [dm6]	T	C	1.723e^-4	0.819	INTRON aret
3R	3855969	3R_3855969_SNP [dm3] 3R_8030247_SNP [dm6]	C	A	1.725e^-4	0.819	UPSTREAM CG10903 & 1 other INTRON CG2747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	10469265	X_10469265_DEL [dm3] X_10575232_DEL [dm6]	CCAAC	C	1.729e^-4	0.819	INTRON spri
2R	16198100	2R_16198100_SNP [dm3] 2R_20310595_SNP [dm6]	G	A	1.730e^-4	0.819	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17788063	2L_17788063_SNP [dm3] 2L_17788063_SNP [dm6]	A	C	1.734e^-4	0.819	UTR_3_PRIME CadN2
2R	14035842	2R_14035842_SNP [dm3] 2R_18148337_SNP [dm6]	C	T	1.734e^-4	0.819	UTR_3_PRIME CG5742 UPSTREAM CG17680 DOWNSTREAM CG5742	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9062137	2L_9062137_SNP [dm3] 2L_9062137_SNP [dm6]	T	C	1.735e^-4	0.819	INTRON CG31708
3L	7754534	3L_7754534_INS [dm3] 3L_7761434_INS [dm6]	T	ATAC	1.756e^-4	0.819	UTR_5_PRIME Hn INTRON Hn
2L	4339720	2L_4339720_SNP [dm3] 2L_4339720_SNP [dm6]	A	C	1.762e^-4	0.819	INTRON Atet	TF binding site mE1_TFBS_inv
3R	15404888	3R_15404888_DEL [dm3] 3R_19579166_DEL [dm6]	TT	T	1.764e^-4	0.819	INTRON Dys
X	10326226	X_10326226_SNP [dm3] X_10432193_SNP [dm6]	C	T	1.767e^-4	0.819	DOWNSTREAM CG12640 INTRON CG32683
3R	9294472	3R_9294472_INS [dm3] 3R_13468750_INS [dm6]	A	AA	1.783e^-4	0.819	INTERGENIC
3L	12121341	3L_12121341_SNP [dm3] 3L_12128241_SNP [dm6]	C	T	1.788e^-4	0.819	SYNONYMOUS_CODING CG34241 UPSTREAM Ir68b
2L	9052221	2L_9052221_SNP [dm3] 2L_9052221_SNP [dm6]	G	T	1.790e^-4	0.819	UTR_3_PRIME CG31708
2R	6253713	2R_6253713_SNP [dm3] 2R_10366208_SNP [dm6]	T	C	1.802e^-4	0.819	INTRON CG42732
3L	23429620	3L_23429620_SNP [dm3] 3L_23436520_SNP [dm6]	G	C	1.804e^-4	0.819	INTERGENIC
3R	21546022	3R_21546022_DEL [dm3] 3R_25720300_DEL [dm6]	GCAAG	G	1.809e^-4	0.819	UPSTREAM LpR2 INTRON LpR2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
X	17545846	X_17545846_SNP [dm3] X_17651813_SNP [dm6]	G	A	1.809e^-4	0.819	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTRON RhoGAPp190	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	8061728	3L_8061728_SNP [dm3] 3L_8068628_SNP [dm6]	C	T	1.816e^-4	0.819	NON_SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
2L	5529933	2L_5529933_SNP [dm3] 2L_5529933_SNP [dm6]	T	C	1.816e^-4	0.819	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG7277 INTRON Cap-D3
X	13128017	X_13128017_SNP [dm3] X_13233984_SNP [dm6]	A	G	1.820e^-4	0.819	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10563846	3L_10563846_SNP [dm3] 3L_10570746_SNP [dm6]	C	A	1.825e^-4	0.819	INTRON A2bp1
X	20377213	X_20377213_SNP [dm3] X_20506186_SNP [dm6]	C	T	1.828e^-4	0.819	INTRON RhoGAP19D
3L	14437002	3L_14437002_SNP [dm3] 3L_14443902_SNP [dm6]	T	A	1.830e^-4	0.819	INTRON bbg
3L	14437005	3L_14437005_SNP [dm3] 3L_14443905_SNP [dm6]	C	A	1.830e^-4	0.819	INTRON bbg
2L	19880310	2L_19880310_SNP [dm3] 2L_19880310_SNP [dm6]	A	C	1.834e^-4	0.819	INTRON sick
3R	20379623	3R_20379623_SNP [dm3] 3R_24553901_SNP [dm6]	C	A	1.835e^-4	0.819	INTRON Esyt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9404130	2R_9404130_SNP [dm3] 2R_13516625_SNP [dm6]	T	A	1.835e^-4	0.819	NON_SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11930551	2L_11930551_SNP [dm3] 2L_11930551_SNP [dm6]	G	A	1.837e^-4	0.819	INTERGENIC
3R	16891841	3R_16891841_SNP [dm3] 3R_21066119_SNP [dm6]	T	G	1.844e^-4	0.819	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	3868804	3R_3868804_SNP [dm3] 3R_8043082_SNP [dm6]	C	A	1.846e^-4	0.819	INTRON CG43060	transposable element FlyBase
2R	15193376	2R_15193376_SNP [dm3] 2R_19305871_SNP [dm6]	T	A	1.854e^-4	0.819	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21845267	3L_21845267_SNP [dm3] 3L_21852167_SNP [dm6]	T	C	1.866e^-4	0.819	INTRON mub
3L	17982874	3L_17982874_SNP [dm3] 3L_17989774_SNP [dm6]	A	G	1.868e^-4	0.819	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17546060	X_17546060_SNP [dm3] X_17652027_SNP [dm6]	C	A	1.870e^-4	0.819	UPSTREAM RhoGAPp190 DOWNSTREAM IntS2 INTRON RhoGAPp190	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	19218874	X_19218874_SNP [dm3] X_19324841_SNP [dm6]	T	C	1.871e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	19009084	3R_19009084_SNP [dm3] 3R_23183362_SNP [dm6]	G	A	1.873e^-4	0.819	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19780125	2L_19780125_SNP [dm3] 2L_19780125_SNP [dm6]	G	A	1.874e^-4	0.819	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6740106	2R_6740106_SNP [dm3] 2R_10852601_SNP [dm6]	A	C	1.875e^-4	0.819	UPSTREAM CR45136 INTRON CG30015
2L	10183248	2L_10183248_SNP [dm3] 2L_10183248_SNP [dm6]	G	T	1.879e^-4	0.819	INTRON Sur
2L	18953908	2L_18953908_SNP [dm3] 2L_18953908_SNP [dm6]	T	A	1.891e^-4	0.819	UPSTREAM CR44741 INTRON CG10621
3R	22950462	3R_22950462_SNP [dm3] 3R_27124740_SNP [dm6]	T	A	1.893e^-4	0.819	UPSTREAM CG6059 DOWNSTREAM CG6051 INTERGENIC
2L	19928435	2L_19928435_SNP [dm3] 2L_19928435_SNP [dm6]	C	T	1.898e^-4	0.819	INTRON sick
2R	15905848	2R_15905848_SNP [dm3] 2R_20018343_SNP [dm6]	T	C	1.901e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14068088	3L_14068088_SNP [dm3] 3L_14074988_SNP [dm6]	C	T	1.901e^-4	0.819	SYNONYMOUS_CODING Pex1 UPSTREAM btl
2R	8534423	2R_8534423_SNP [dm3] 2R_12646918_SNP [dm6]	T	A	1.907e^-4	0.819	INTRON CG8785
3L	8615278	3L_8615278_SNP [dm3] 3L_8622178_SNP [dm6]	C	T	1.917e^-4	0.819	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
3L	7927084	3L_7927084_SNP [dm3] 3L_7933984_SNP [dm6]	C	A	1.924e^-4	0.819	SPLICE_SITE_DONOR syd INTRON syd	TF binding site mE1_TFBS_cad
2L	1121960	2L_1121960_SNP [dm3] 2L_1121960_SNP [dm6]	C	T	1.926e^-4	0.819	INTRON Pino
X	5971465	X_5971465_SNP [dm3] X_6077432_SNP [dm6]	G	A	1.932e^-4	0.819	START_GAINED CG4666 UTR_5_PRIME CG4666
3L	5778685	3L_5778685_SNP [dm3] 3L_5785585_SNP [dm6]	C	T	1.939e^-4	0.819	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
3L	5778686	3L_5778686_SNP [dm3] 3L_5785586_SNP [dm6]	A	G	1.939e^-4	0.819	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
2R	20054528	2R_20054528_SNP [dm3] 2R_24167005_SNP [dm6]	C	T	1.943e^-4	0.819	UPSTREAM CG3328 INTRON CG3328	TF binding site mE1_TFBS_chinmo
3R	23064057	3R_23064057_SNP [dm3] 3R_27238335_SNP [dm6]	A	T	1.955e^-4	0.819	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	2569392	X_2569392_SNP [dm3] X_2675359_SNP [dm6]	G	T	1.959e^-4	0.819	UTR_3_PRIME sgg INTRON sgg EXON CR45197	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3042458	2R_3042458_SNP [dm3] 2R_7154953_SNP [dm6]	T	C	1.959e^-4	0.819	NON_SYNONYMOUS_CODING Spn43Ad INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8246030	2L_8246030_SNP [dm3] 2L_8246030_SNP [dm6]	G	A	1.961e^-4	0.819	SYNONYMOUS_CODING CG8086 INTRON CG8086
3L	11227439	3L_11227439_SNP [dm3] 3L_11234339_SNP [dm6]	C	T	1.969e^-4	0.819	SYNONYMOUS_CODING Ir68a
X	4793788	X_4793788_INS [dm3] X_4899755_INS [dm6]	A	ACAAA	1.971e^-4	0.819	INTRON CG42594
3R	22235917	3R_22235917_SNP [dm3] 3R_26410195_SNP [dm6]	T	A	1.975e^-4	0.819	INTERGENIC
2L	9061496	2L_9061496_SNP [dm3] 2L_9061496_SNP [dm6]	C	T	1.976e^-4	0.819	INTRON CG31708	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17552470	3R_17552470_SNP [dm3] 3R_21726748_SNP [dm6]	C	T	1.986e^-4	0.819	INTERGENIC
3L	23594359	3L_23594359_SNP [dm3] 3L_23601259_SNP [dm6]	A	G	1.987e^-4	0.819	INTRON AGO3	transposable element FlyBase
3L	24264837	3L_24264837_SNP [dm3] 3L_24271737_SNP [dm6]	A	C	1.992e^-4	0.819	INTRON Snap25
X	5260661	X_5260661_SNP [dm3] X_5366628_SNP [dm6]	T	C	1.994e^-4	0.819	INTRON SK
3R	14725688	3R_14725688_SNP [dm3] 3R_18899966_SNP [dm6]	C	T	1.994e^-4	0.819	SYNONYMOUS_CODING Rh2 DOWNSTREAM CG14297	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25549230	3R_25549230_SNP [dm3] 3R_29723508_SNP [dm6]	G	T	1.997e^-4	0.819	NON_SYNONYMOUS_CODING Pcd DOWNSTREAM CG34296 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2002416	3L_2002416_SNP [dm3] 3L_2002416_SNP [dm6]	G	T	2.000e^-4	0.819	DOWNSTREAM CG42841 INTERGENIC
2L	8588835	2L_8588835_SNP [dm3] 2L_8588835_SNP [dm6]	C	T	2.007e^-4	0.819	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
2L	8068260	2L_8068260_SNP [dm3] 2L_8068260_SNP [dm6]	A	T	2.008e^-4	0.819	NON_SYNONYMOUS_CODING poe
3R	23064208	3R_23064208_SNP [dm3] 3R_27238486_SNP [dm6]	T	A	2.008e^-4	0.819	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8245979	2L_8245979_SNP [dm3] 2L_8245979_SNP [dm6]	G	T	2.009e^-4	0.819	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086
3L	24220261	3L_24220261_SNP [dm3] 3L_24227161_SNP [dm6]	T	A	2.014e^-4	0.819	INTRON Snap25
2L	11448722	2L_11448722_SNP [dm3] 2L_11448722_SNP [dm6]	C	A	2.018e^-4	0.819	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16198071	2R_16198071_SNP [dm3] 2R_20310566_SNP [dm6]	C	A	2.021e^-4	0.819	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6775970	2R_6775970_SNP [dm3] 2R_10888465_SNP [dm6]	C	T	2.027e^-4	0.819	SPLICE_SITE_REGION CG30020 INTRON CG30020	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8325173	2R_8325173_SNP [dm3] 2R_12437668_SNP [dm6]	C	T	2.032e^-4	0.819	START_GAINED Dyb UTR_5_PRIME Dyb DOWNSTREAM CG30051 INTRON Dyb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7156851	3R_7156851_SNP [dm3] 3R_11331129_SNP [dm6]	C	A	2.034e^-4	0.819	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15213276	2L_15213276_SNP [dm3] 2L_15213276_SNP [dm6]	T	C	2.037e^-4	0.819	INTERGENIC
3R	17515033	3R_17515033_SNP [dm3] 3R_21689311_SNP [dm6]	T	A	2.048e^-4	0.819	INTRON CG31176
3R	9823016	3R_9823016_SNP [dm3] 3R_13997294_SNP [dm6]	C	T	2.050e^-4	0.819	INTRON rdx
3R	16891881	3R_16891881_SNP [dm3] 3R_21066159_SNP [dm6]	A	C	2.052e^-4	0.819	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	3503620	3R_3503620_SNP [dm3] 3R_7677898_SNP [dm6]	A	G	2.056e^-4	0.819	INTRON Nlg1
2L	6517828	2L_6517828_SNP [dm3] 2L_6517828_SNP [dm6]	T	C	2.056e^-4	0.819	INTRON CG31637
2R	8875722	2R_8875722_SNP [dm3] 2R_12988217_SNP [dm6]	T	G	2.060e^-4	0.819	INTERGENIC
X	14168852	X_14168852_SNP [dm3] X_14274819_SNP [dm6]	T	A	2.077e^-4	0.823	INTRON na
3L	11220628	3L_11220628_SNP [dm3] 3L_11227528_SNP [dm6]	C	A	2.083e^-4	0.824	INTRON CG42671
3R	23064112	3R_23064112_SNP [dm3] 3R_27238390_SNP [dm6]	G	A	2.087e^-4	0.824	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	17922709	X_17922709_SNP [dm3] X_18028676_SNP [dm6]	T	C	2.107e^-4	0.828	DOWNSTREAM CG6867 INTRON Sh
2L	15620715	2L_15620715_SNP [dm3] 2L_15620715_SNP [dm6]	T	A	2.125e^-4	0.828	INTERGENIC
3R	5445437	3R_5445437_INS [dm3] 3R_9619715_INS [dm6]	T	TTT	2.126e^-4	0.828	INTRON CG8312
X	14793647	X_14793647_SNP [dm3] X_14899614_SNP [dm6]	T	A	2.134e^-4	0.828	INTRON Flo2
2R	16546543	2R_16546543_SNP [dm3] 2R_20659038_SNP [dm6]	C	T	2.148e^-4	0.828	SYNONYMOUS_CODING Lrt UPSTREAM tRNA:CR30211	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21231950	3R_21231950_SNP [dm3] 3R_25406228_SNP [dm6]	G	A	2.153e^-4	0.828	INTRON Fur1	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4332150	2L_4332150_SNP [dm3] 2L_4332150_SNP [dm6]	A	G	2.155e^-4	0.828	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
X	17663890	X_17663890_SNP [dm3] X_17769857_SNP [dm6]	A	C	2.158e^-4	0.828	INTRON unc-4
3R	9823019	3R_9823019_SNP [dm3] 3R_13997297_SNP [dm6]	A	C	2.160e^-4	0.828	INTRON rdx
3L	3580949	3L_3580949_SNP [dm3] 3L_3580949_SNP [dm6]	G	A	2.160e^-4	0.828	INTRON Eip63E
3R	7156852	3R_7156852_SNP [dm3] 3R_11331130_SNP [dm6]	C	A	2.160e^-4	0.828	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17542255	2L_17542255_SNP [dm3] 2L_17542255_SNP [dm6]	T	A	2.162e^-4	0.828	EXON CR43304
X	11269828	X_11269828_SNP [dm3] X_11375795_SNP [dm6]	G	A	2.163e^-4	0.828	UTR_5_PRIME dlg1 INTRON dlg1
X	10137255	X_10137255_SNP [dm3] X_10243222_SNP [dm6]	A	G	2.169e^-4	0.828	INTRON Hk
3R	26496285	3R_26496285_SNP [dm3] 3R_30670563_SNP [dm6]	G	A	2.176e^-4	0.828	INTERGENIC
3R	20353931	3R_20353931_SNP [dm3] 3R_24528209_SNP [dm6]	G	C	2.192e^-4	0.828	SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13618	TF binding site mE1_TFBS_cad
3R	21446403	3R_21446403_SNP [dm3] 3R_25620681_SNP [dm6]	C	A	2.195e^-4	0.828	DOWNSTREAM CG5071 INTRON Npl4
3R	23961282	3R_23961282_SNP [dm3] 3R_28135560_SNP [dm6]	T	C	2.197e^-4	0.828	INTERGENIC
2R	19133302	2R_19133302_SNP [dm3] 2R_23245779_SNP [dm6]	C	T	2.204e^-4	0.828	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
3L	11319783	3L_11319783_SNP [dm3] 3L_11326683_SNP [dm6]	A	G	2.205e^-4	0.828	INTERGENIC
2R	10373123	2R_10373123_SNP [dm3] 2R_14485618_SNP [dm6]	C	A	2.217e^-4	0.828	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15576870	X_15576870_SNP [dm3] X_15682837_SNP [dm6]	T	A	2.227e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7869391	3L_7869391_SNP [dm3] 3L_7876291_SNP [dm6]	T	C	2.229e^-4	0.828	INTRON CG32365
X	11331539	X_11331539_SNP [dm3] X_11437506_SNP [dm6]	C	A	2.235e^-4	0.828	SYNONYMOUS_CODING Evi5
3L	9355696	3L_9355696_SNP [dm3] 3L_9362596_SNP [dm6]	G	A	2.237e^-4	0.828	NON_SYNONYMOUS_CODING CG34456 DOWNSTREAM Klp67A & 1 other
3R	6621003	3R_6621003_SNP [dm3] 3R_10795281_SNP [dm6]	T	C	2.239e^-4	0.828	SYNONYMOUS_CODING CG14692	TF binding site mE1_TFBS_HSA
3L	4665329	3L_4665329_SNP [dm3] 3L_4665329_SNP [dm6]	C	A	2.242e^-4	0.828	DOWNSTREAM CG32236 INTRON axo
3R	23770189	3R_23770189_SNP [dm3] 3R_27944467_SNP [dm6]	T	C	2.247e^-4	0.828	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	424774	3L_424774_SNP [dm3] 3L_424774_SNP [dm6]	G	C	2.248e^-4	0.828	INTERGENIC
2L	9061388	2L_9061388_SNP [dm3] 2L_9061388_SNP [dm6]	T	C	2.255e^-4	0.828	INTRON CG31708	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20879685	X_20879685_DEL [dm3] X_21008658_DEL [dm6]	TC	T	2.257e^-4	0.828	INTERGENIC
X	12874651	X_12874651_SNP [dm3] X_12980618_SNP [dm6]	T	G	2.260e^-4	0.828	INTERGENIC
2L	5966621	2L_5966621_SNP [dm3] 2L_5966621_SNP [dm6]	C	T	2.267e^-4	0.828	NON_SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4206546	2L_4206546_SNP [dm3] 2L_4206546_SNP [dm6]	A	T	2.271e^-4	0.828	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17534177	2L_17534177_SNP [dm3] 2L_17534177_SNP [dm6]	A	G	2.276e^-4	0.828	INTERGENIC
3L	18813717	3L_18813717_SNP [dm3] 3L_18820617_SNP [dm6]	A	C	2.283e^-4	0.828	START_GAINED CG14073 UTR_5_PRIME CG14073 UPSTREAM HipHop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	24264806	3L_24264806_SNP [dm3] 3L_24271706_SNP [dm6]	C	A	2.284e^-4	0.828	INTRON Snap25
2L	9052218	2L_9052218_SNP [dm3] 2L_9052218_SNP [dm6]	A	G	2.286e^-4	0.828	UTR_3_PRIME CG31708
X	12876162	X_12876162_SNP [dm3] X_12982129_SNP [dm6]	G	T	2.292e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14566327	2L_14566327_SNP [dm3] 2L_14566327_SNP [dm6]	A	T	2.292e^-4	0.828	INTERGENIC
2L	5948949	2L_5948949_SNP [dm3] 2L_5948949_SNP [dm6]	T	A	2.300e^-4	0.828	UTR_3_PRIME Gpdh UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4790014	3L_4790014_SNP [dm3] 3L_4790014_SNP [dm6]	A	G	2.300e^-4	0.828	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	2454663	2L_2454663_SNP [dm3] 2L_2454663_SNP [dm6]	G	A	2.302e^-4	0.828	UPSTREAM dpp INTRON dpp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22397134	3L_22397134_SNP [dm3] 3L_22404034_SNP [dm6]	T	G	2.309e^-4	0.828	INTRON Ten-m	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	635400	2R_635400_SNP [dm3] 2R_4747895_SNP [dm6]	C	G	2.310e^-4	0.828	INTRON conu
2R	8579777	2R_8579777_SNP [dm3] 2R_12692272_SNP [dm6]	A	G	2.321e^-4	0.828	SYNONYMOUS_CODING CG8768	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	19928432	2L_19928432_SNP [dm3] 2L_19928432_SNP [dm6]	T	C	2.325e^-4	0.828	INTRON sick
3L	10578869	3L_10578869_INS [dm3] 3L_10585769_INS [dm6]	A	ATT	2.328e^-4	0.828	INTRON A2bp1	TF binding site mE1_TFBS_cad
2L	6268992	2L_6268992_SNP [dm3] 2L_6268992_SNP [dm6]	G	A	2.330e^-4	0.828	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	24288308	3L_24288308_SNP [dm3] 3L_24295208_SNP [dm6]	A	T	2.333e^-4	0.828	INTRON Snap25
2R	15144925	2R_15144925_SNP [dm3] 2R_19257420_SNP [dm6]	T	C	2.334e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	12867497	3L_12867497_SNP [dm3] 3L_12874397_SNP [dm6]	C	G	2.339e^-4	0.828	INTERGENIC
2R	10373065	2R_10373065_SNP [dm3] 2R_14485560_SNP [dm6]	A	C	2.340e^-4	0.828	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1405410	2R_1405410_SNP [dm3] 2R_5517905_SNP [dm6]	T	C	2.341e^-4	0.828	INTRON CG30438	transposable element FlyBase
3L	4665332	3L_4665332_SNP [dm3] 3L_4665332_SNP [dm6]	T	C	2.353e^-4	0.828	DOWNSTREAM CG32236 INTRON axo
3L	14187859	3L_14187859_SNP [dm3] 3L_14194759_SNP [dm6]	T	G	2.356e^-4	0.828	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17021978	X_17021978_SNP [dm3] X_17127945_SNP [dm6]	G	A	2.359e^-4	0.828	INTRON CG5004
X	17664314	X_17664314_SNP [dm3] X_17770281_SNP [dm6]	A	G	2.360e^-4	0.828	INTRON unc-4
3R	7113557	3R_7113557_SNP [dm3] 3R_11287835_SNP [dm6]	C	A	2.363e^-4	0.828	INTRON CR31386
3R	22230306	3R_22230306_SNP [dm3] 3R_26404584_SNP [dm6]	T	A	2.366e^-4	0.828	UPSTREAM ppk15 INTERGENIC
2L	2755107	2L_2755107_SNP [dm3] 2L_2755107_SNP [dm6]	C	G	2.367e^-4	0.828	INTRON Bacc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12661676	2R_12661676_DEL [dm3] 2R_16774171_DEL [dm6]	TT	T	2.372e^-4	0.829	UPSTREAM Arp53D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	6470996	X_6470996_SNP [dm3] X_6576963_SNP [dm6]	T	C	2.385e^-4	0.832	SPLICE_SITE_REGION CG34417 INTRON CG34417
3L	15358445	3L_15358445_SNP [dm3] 3L_15365345_SNP [dm6]	A	G	2.392e^-4	0.832	INTERGENIC
3L	14907405	3L_14907405_SNP [dm3] 3L_14914305_SNP [dm6]	A	T	2.396e^-4	0.832	INTRON DCX-EMAP
3L	11378398	3L_11378398_SNP [dm3] 3L_11385298_SNP [dm6]	T	C	2.414e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13747232	3R_13747232_SNP [dm3] 3R_17921510_SNP [dm6]	G	T	2.419e^-4	0.835	INTRON cpo
2R	6719417	2R_6719417_SNP [dm3] 2R_10831912_SNP [dm6]	A	G	2.423e^-4	0.835	INTRON CG12344	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8443057	2R_8443057_SNP [dm3] 2R_12555552_SNP [dm6]	T	A	2.438e^-4	0.835	INTRON fra
3R	21624581	3R_21624581_SNP [dm3] 3R_25798859_SNP [dm6]	G	A	2.439e^-4	0.835	INTERGENIC
X	16939659	X_16939659_SNP [dm3] X_17045626_SNP [dm6]	T	C	2.452e^-4	0.835	INTRON CG45002
3R	22270721	3R_22270721_SNP [dm3] 3R_26444999_SNP [dm6]	A	G	2.464e^-4	0.835	INTRON tx
X	12273532	X_12273532_SNP [dm3] X_12379499_SNP [dm6]	A	C	2.482e^-4	0.835	INTERGENIC
X	16509002	X_16509002_SNP [dm3] X_16614969_SNP [dm6]	T	G	2.486e^-4	0.835	DOWNSTREAM CG9782 & 1 other INTERGENIC
3L	9089243	3L_9089243_SNP [dm3] 3L_9096143_SNP [dm6]	T	C	2.488e^-4	0.835	UPSTREAM CG13315 INTERGENIC
3R	22604195	3R_22604195_SNP [dm3] 3R_26778473_SNP [dm6]	C	T	2.503e^-4	0.835	INTERGENIC
2R	7107191	2R_7107191_SNP [dm3] 2R_11219686_SNP [dm6]	G	A	2.509e^-4	0.835	UTR_5_PRIME Syx6 & 1 other UPSTREAM Syx6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18075602	3R_18075602_SNP [dm3] 3R_22249880_SNP [dm6]	C	A	2.512e^-4	0.835	INTRON SKIP
X	791119	X_791119_SNP [dm3] X_897086_SNP [dm6]	C	T	2.518e^-4	0.835	INTRON CG43867
2L	6268490	2L_6268490_SNP [dm3] 2L_6268490_SNP [dm6]	A	T	2.523e^-4	0.835	INTRON Ddr
3L	1776169	3L_1776169_SNP [dm3] 3L_1776169_SNP [dm6]	G	A	2.530e^-4	0.835	SYNONYMOUS_CODING CG12018 DOWNSTREAM CG2021	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	9846988	2R_9846988_SNP [dm3] 2R_13959483_SNP [dm6]	C	T	2.541e^-4	0.835	INTRON Rpn13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_cnc
2L	10345235	2L_10345235_SNP [dm3] 2L_10345235_SNP [dm6]	T	G	2.542e^-4	0.835	INTRON CG5022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15763320	2L_15763320_SNP [dm3] 2L_15763320_SNP [dm6]	T	A	2.546e^-4	0.835	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15040516	2L_15040516_SNP [dm3] 2L_15040516_SNP [dm6]	T	A	2.549e^-4	0.835	INTRON Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10560154	3L_10560154_SNP [dm3] 3L_10567054_SNP [dm6]	A	C	2.550e^-4	0.835	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17021372	X_17021372_SNP [dm3] X_17127339_SNP [dm6]	C	T	2.552e^-4	0.835	NON_SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
3L	23776803	3L_23776803_SNP [dm3] 3L_23783703_SNP [dm6]	A	T	2.553e^-4	0.835	UPSTREAM CG43968 INTERGENIC
3L	15789159	3L_15789159_SNP [dm3] 3L_15796059_SNP [dm6]	A	G	2.556e^-4	0.835	INTERGENIC
3L	3724365	3L_3724365_SNP [dm3] 3L_3724365_SNP [dm6]	G	A	2.564e^-4	0.835	INTRON CG32264
3R	21624839	3R_21624839_INS [dm3] 3R_25799117_INS [dm6]	C	CC	2.567e^-4	0.835	INTERGENIC
3L	12385790	3L_12385790_SNP [dm3] 3L_12392690_SNP [dm6]	C	T	2.568e^-4	0.835	INTERGENIC
3R	18063389	3R_18063389_SNP [dm3] 3R_22237667_SNP [dm6]	C	G	2.571e^-4	0.835	INTRON SKIP
2L	9078577	2L_9078577_INS [dm3] 2L_9078577_INS [dm6]	A	AA	2.574e^-4	0.835	DOWNSTREAM CG12439 INTERGENIC
3L	7754230	3L_7754230_DEL [dm3] 3L_7761130_DEL [dm6]	AC	A	2.574e^-4	0.835	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2L	7216645	2L_7216645_SNP [dm3] 2L_7216645_SNP [dm6]	C	T	2.575e^-4	0.835	INTRON CG13784
2R	6861861	2R_6861861_SNP [dm3] 2R_10974356_SNP [dm6]	A	G	2.581e^-4	0.835	INTERGENIC
3L	21638768	3L_21638768_SNP [dm3] 3L_21645668_SNP [dm6]	A	G	2.585e^-4	0.835	INTRON CG43980	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6252588	2R_6252588_SNP [dm3] 2R_10365083_SNP [dm6]	T	G	2.592e^-4	0.835	UTR_5_PRIME CG42732 INTRON CG42732
2R	6252590	2R_6252590_INS [dm3] 2R_10365085_INS [dm6]	T	TGT	2.592e^-4	0.835	UTR_5_PRIME CG42732 INTRON CG42732
2R	6252606	2R_6252606_SNP [dm3] 2R_10365101_SNP [dm6]	G	A	2.592e^-4	0.835	UTR_5_PRIME CG42732 INTRON CG42732
2R	10268812	2R_10268812_SNP [dm3] 2R_14381307_SNP [dm6]	G	A	2.594e^-4	0.835	INTRON Dh44-R1
2L	4236069	2L_4236069_SNP [dm3] 2L_4236069_SNP [dm6]	G	A	2.599e^-4	0.835	INTERGENIC
2L	15217371	2L_15217371_SNP [dm3] 2L_15217371_SNP [dm6]	T	C	2.602e^-4	0.835	INTERGENIC
3L	679819	3L_679819_SNP [dm3] 3L_679819_SNP [dm6]	T	G	2.603e^-4	0.835	UTR_5_PRIME CG17129 DOWNSTREAM CG3386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4333616	2L_4333616_SNP [dm3] 2L_4333616_SNP [dm6]	A	G	2.604e^-4	0.835	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	21842808	3L_21842808_SNP [dm3] 3L_21849708_SNP [dm6]	A	C	2.604e^-4	0.835	INTRON mub
3L	9506110	3L_9506110_SNP [dm3] 3L_9513010_SNP [dm6]	A	T	2.614e^-4	0.835	UPSTREAM CG33703 DOWNSTREAM CR33701 INTRON CG33702
3L	7869222	3L_7869222_SNP [dm3] 3L_7876122_SNP [dm6]	A	C	2.616e^-4	0.835	INTRON CG32365
2L	4955273	2L_4955273_SNP [dm3] 2L_4955273_SNP [dm6]	A	G	2.621e^-4	0.835	UPSTREAM Marcal1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	14535010	2L_14535010_SNP [dm3] 2L_14535010_SNP [dm6]	G	A	2.621e^-4	0.835	INTERGENIC
X	4273775	X_4273775_SNP [dm3] X_4379742_SNP [dm6]	C	G	2.634e^-4	0.835	INTERGENIC
X	12874799	X_12874799_SNP [dm3] X_12980766_SNP [dm6]	G	A	2.639e^-4	0.835	INTERGENIC
2R	16892796	2R_16892796_SNP [dm3] 2R_21005291_SNP [dm6]	G	A	2.639e^-4	0.835	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
X	5034253	X_5034253_SNP [dm3] X_5140220_SNP [dm6]	A	G	2.640e^-4	0.835	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
3L	24288025	3L_24288025_SNP [dm3] 3L_24294925_SNP [dm6]	C	T	2.641e^-4	0.835	INTRON Snap25
3R	23064211	3R_23064211_SNP [dm3] 3R_27238489_SNP [dm6]	C	T	2.645e^-4	0.835	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18090615	3R_18090615_SNP [dm3] 3R_22264893_SNP [dm6]	A	G	2.647e^-4	0.835	INTRON SKIP
2R	3588892	2R_3588892_SNP [dm3] 2R_7701387_SNP [dm6]	C	T	2.647e^-4	0.835	SYNONYMOUS_CODING CG30496 INTRON CG30493
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	2.650e^-4	0.835	INTRON pHCl
3L	15052326	3L_15052326_DEL [dm3] 3L_15059226_DEL [dm6]	TCAT	T	2.670e^-4	0.836	INTRON Sytbeta
3L	10563656	3L_10563656_INS [dm3] 3L_10570556_INS [dm6]	T	TT	2.673e^-4	0.836	INTRON A2bp1
3L	11120078	3L_11120078_SNP [dm3] 3L_11126978_SNP [dm6]	C	G	2.673e^-4	0.836	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	10563121	3L_10563121_INS [dm3] 3L_10570021_INS [dm6]	TTTG	ATAAA	2.683e^-4	0.836	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21128698	X_21128698_SNP [dm3] X_21257671_SNP [dm6]	G	A	2.684e^-4	0.836	INTRON CG32521
2L	12464585	2L_12464585_SNP [dm3] 2L_12464585_SNP [dm6]	A	G	2.686e^-4	0.836	INTRON bun
X	3045475	X_3045475_SNP [dm3] X_3151442_SNP [dm6]	C	T	2.686e^-4	0.836	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	16132930	X_16132930_SNP [dm3] X_16238897_SNP [dm6]	G	A	2.690e^-4	0.836	INTERGENIC
3R	24015091	3R_24015091_SNP [dm3] 3R_28189369_SNP [dm6]	C	T	2.691e^-4	0.836	INTRON CG34354
2R	15450787	2R_15450787_SNP [dm3] 2R_19563282_SNP [dm6]	C	T	2.696e^-4	0.836	INTRON sm
X	17663866	X_17663866_SNP [dm3] X_17769833_SNP [dm6]	C	T	2.703e^-4	0.837	INTRON unc-4
3L	1122175	3L_1122175_SNP [dm3] 3L_1122175_SNP [dm6]	C	G	2.710e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3260094	2L_3260094_SNP [dm3] 2L_3260094_SNP [dm6]	A	G	2.721e^-4	0.839	DOWNSTREAM CR45337 INTERGENIC
3R	19009096	3R_19009096_SNP [dm3] 3R_23183374_SNP [dm6]	T	C	2.737e^-4	0.84	INTRON Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	24059096	3L_24059096_SNP [dm3] 3L_24065996_SNP [dm6]	T	C	2.737e^-4	0.84	INTERGENIC
3R	21741731	3R_21741731_INS [dm3] 3R_25916009_INS [dm6]	T	TG	2.745e^-4	0.84	INTRON CG42235
3L	14907401	3L_14907401_SNP [dm3] 3L_14914301_SNP [dm6]	T	C	2.745e^-4	0.84	INTRON DCX-EMAP
X	13394919	X_13394919_SNP [dm3] X_13500886_SNP [dm6]	A	G	2.748e^-4	0.84	INTRON Neto
3R	23003443	3R_23003443_SNP [dm3] 3R_27177721_SNP [dm6]	A	T	2.761e^-4	0.84	INTRON Ser	TF binding site mE1_TFBS_cad
X	18433433	X_18433433_SNP [dm3] X_18539400_SNP [dm6]	C	A	2.764e^-4	0.84	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	689571	3L_689571_SNP [dm3] 3L_689571_SNP [dm6]	C	T	2.770e^-4	0.84	SYNONYMOUS_CODING CG32483 UPSTREAM RabX6	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	24289093	3L_24289093_SNP [dm3] 3L_24295993_SNP [dm6]	C	T	2.776e^-4	0.84	INTRON Snap25
3R	16328399	3R_16328399_SNP [dm3] 3R_20502677_SNP [dm6]	T	A	2.776e^-4	0.84	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2R	13808578	2R_13808578_SNP [dm3] 2R_17921073_SNP [dm6]	C	T	2.781e^-4	0.84	INTRON Elk
3R	5154668	3R_5154668_SNP [dm3] 3R_9328946_SNP [dm6]	C	A	2.785e^-4	0.84	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	18365964	X_18365964_SNP [dm3] X_18471931_SNP [dm6]	A	G	2.787e^-4	0.84	INTRON CG32547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4951792	3L_4951792_SNP [dm3] 3L_4951792_SNP [dm6]	A	G	2.806e^-4	0.84	INTRON Con
2R	19247803	2R_19247803_SNP [dm3] 2R_23360280_SNP [dm6]	C	T	2.810e^-4	0.84	UTR_3_PRIME vir DOWNSTREAM CG34424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10578846	3L_10578846_INS [dm3] 3L_10585746_INS [dm6]	T	TGGTATTCATAA...	2.813e^-4	0.84	INTRON A2bp1	TF binding site mE1_TFBS_cad
2R	15192842	2R_15192842_SNP [dm3] 2R_19305337_SNP [dm6]	A	T	2.818e^-4	0.84	NON_SYNONYMOUS_CODING CG7461 DOWNSTREAM Tab2	TF binding site mE1_TFBS_sens
3L	9506105	3L_9506105_SNP [dm3] 3L_9513005_SNP [dm6]	G	A	2.821e^-4	0.84	UPSTREAM CG33703 DOWNSTREAM CR33701 INTRON CG33702
X	16729875	X_16729875_SNP [dm3] X_16835842_SNP [dm6]	A	T	2.827e^-4	0.84	UPSTREAM CG13004 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7003229	3L_7003229_DEL [dm3] 3L_7010129_DEL [dm6]	TA	C	2.829e^-4	0.84	INTRON Mp
3L	23993445	3L_23993445_SNP [dm3] 3L_24000345_SNP [dm6]	T	C	2.830e^-4	0.84	INTERGENIC
3L	2990227	3L_2990227_SNP [dm3] 3L_2990227_SNP [dm6]	G	A	2.838e^-4	0.84	INTERGENIC
3L	2040697	3L_2040697_SNP [dm3] 3L_2040697_SNP [dm6]	A	G	2.838e^-4	0.84	INTRON sls
X	12364882	X_12364882_SNP [dm3] X_12470849_SNP [dm6]	A	C	2.839e^-4	0.84	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	23598120	3L_23598120_SNP [dm3] 3L_23605020_SNP [dm6]	G	T	2.839e^-4	0.84	INTRON AGO3	transposable element FlyBase
X	15532353	X_15532353_SNP [dm3] X_15638320_SNP [dm6]	T	G	2.841e^-4	0.84	INTERGENIC
X	5380557	X_5380557_SNP [dm3] X_5486524_SNP [dm6]	T	C	2.854e^-4	0.843	INTRON SPR	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11923475	3L_11923475_SNP [dm3] 3L_11930375_SNP [dm6]	G	A	2.859e^-4	0.843	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18084228	3R_18084228_SNP [dm3] 3R_22258506_SNP [dm6]	G	A	2.866e^-4	0.843	INTRON SKIP
3L	2782264	3L_2782264_DEL [dm3] 3L_2782264_DEL [dm6]	AA	A	2.868e^-4	0.843	UTR_5_PRIME pgant6 DOWNSTREAM mRpS35	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9391173	3L_9391173_DEL [dm3] 3L_9398073_DEL [dm6]	ATGTTG	A	2.879e^-4	0.843	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	19477851	X_19477851_DEL [dm3] X_19583818_DEL [dm6]	CATTTCAAC	C	2.883e^-4	0.843	FRAME_SHIFT CG14204	TF binding site mE1_TFBS_chinmo
3R	6966408	3R_6966408_SNP [dm3] 3R_11140686_SNP [dm6]	C	G	2.889e^-4	0.843	DOWNSTREAM CG4706 INTERGENIC
2R	6083647	2R_6083647_SNP [dm3] 2R_10196142_SNP [dm6]	A	C	2.893e^-4	0.843	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	19357847	X_19357847_SNP [dm3] X_19463814_SNP [dm6]	T	G	2.894e^-4	0.843	INTRON kek5
3R	22937823	3R_22937823_SNP [dm3] 3R_27112101_SNP [dm6]	T	G	2.895e^-4	0.843	UTR_5_PRIME gb UPSTREAM CG5815 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19880511	2L_19880511_SNP [dm3] 2L_19880511_SNP [dm6]	G	A	2.910e^-4	0.846	INTRON sick
3R	18090649	3R_18090649_SNP [dm3] 3R_22264927_SNP [dm6]	C	T	2.930e^-4	0.851	INTRON SKIP
3L	1519394	3L_1519394_SNP [dm3] 3L_1519394_SNP [dm6]	C	A	2.934e^-4	0.851	INTRON Psa
2R	17063279	2R_17063279_SNP [dm3] 2R_21175774_SNP [dm6]	G	A	2.941e^-4	0.851	INTRON Pu
2L	4236072	2L_4236072_SNP [dm3] 2L_4236072_SNP [dm6]	A	G	2.948e^-4	0.852	INTERGENIC
3R	19569471	3R_19569471_SNP [dm3] 3R_23743749_SNP [dm6]	A	T	2.962e^-4	0.854	INTRON Hmgcr
2R	16920487	2R_16920487_SNP [dm3] 2R_21032982_SNP [dm6]	T	C	2.964e^-4	0.854	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9062091	2L_9062091_SNP [dm3] 2L_9062091_SNP [dm6]	C	A	2.970e^-4	0.854	INTRON CG31708
3L	12930842	3L_12930842_INS [dm3] 3L_12937742_INS [dm6]	T	TTT	2.972e^-4	0.854	INTERGENIC
2R	8581030	2R_8581030_SNP [dm3] 2R_12693525_SNP [dm6]	T	C	3.002e^-4	0.857	UPSTREAM CG8768 INTERGENIC
2L	8999686	2L_8999686_SNP [dm3] 2L_8999686_SNP [dm6]	C	A	3.010e^-4	0.857	UTR_3_PRIME Try29F DOWNSTREAM Try29F
3L	10131884	3L_10131884_INS [dm3] 3L_10138784_INS [dm6]	G	GTCAGTCCGTTG...	3.023e^-4	0.857	INTRON dpr6
3R	17350936	3R_17350936_SNP [dm3] 3R_21525214_SNP [dm6]	A	T	3.029e^-4	0.857	SYNONYMOUS_CODING CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
X	18847792	X_18847792_SNP [dm3] X_18953759_SNP [dm6]	C	T	3.032e^-4	0.857	INTRON CG43759
2L	15750556	2L_15750556_SNP [dm3] 2L_15750556_SNP [dm6]	G	A	3.037e^-4	0.857	SYNONYMOUS_CODING l_2_35Di	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4794079	X_4794079_SNP [dm3] X_4900046_SNP [dm6]	A	T	3.042e^-4	0.857	INTRON CG42594
2R	7508687	2R_7508687_SNP [dm3] 2R_11621182_SNP [dm6]	G	A	3.048e^-4	0.857	NON_SYNONYMOUS_CODING CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9084602	2R_9084602_SNP [dm3] 2R_13197097_SNP [dm6]	C	T	3.055e^-4	0.857	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17557995	3R_17557995_SNP [dm3] 3R_21732273_SNP [dm6]	C	T	3.062e^-4	0.857	INTERGENIC
2R	18215945	2R_18215945_SNP [dm3] 2R_22328440_SNP [dm6]	G	A	3.063e^-4	0.857	SYNONYMOUS_CODING Gp150 DOWNSTREAM CG34207	TF binding site mE1_TFBS_cad
X	3266090	X_3266090_SNP [dm3] X_3372057_SNP [dm6]	G	T	3.065e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	12352339	3L_12352339_SNP [dm3] 3L_12359239_SNP [dm6]	A	G	3.065e^-4	0.857	INTERGENIC
X	19875298	X_19875298_DEL [dm3] X_19981265_DEL [dm6]	ATGGCTTGTAACTCTTTGGT...	A	3.072e^-4	0.857	INTERGENIC
3L	5902536	3L_5902536_SNP [dm3] 3L_5909436_SNP [dm6]	G	A	3.075e^-4	0.857	SYNONYMOUS_CODING CG13288
3R	18064022	3R_18064022_SNP [dm3] 3R_22238300_SNP [dm6]	T	G	3.080e^-4	0.857	INTRON SKIP
3L	3861556	3L_3861556_SNP [dm3] 3L_3861556_SNP [dm6]	G	A	3.085e^-4	0.857	UTR_3_PRIME Awh
3L	14075607	3L_14075607_SNP [dm3] 3L_14082507_SNP [dm6]	C	T	3.088e^-4	0.857	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15620770	2L_15620770_SNP [dm3] 2L_15620770_SNP [dm6]	C	T	3.092e^-4	0.857	INTERGENIC
2L	8661350	2L_8661350_SNP [dm3] 2L_8661350_SNP [dm6]	G	T	3.092e^-4	0.857	INTRON Sema-1a
2L	9078557	2L_9078557_SNP [dm3] 2L_9078557_SNP [dm6]	C	T	3.093e^-4	0.857	DOWNSTREAM CG12439 INTERGENIC
2R	6730918	2R_6730918_SNP [dm3] 2R_10843413_SNP [dm6]	T	C	3.105e^-4	0.857	SYNONYMOUS_CODING CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	3715610	X_3715610_SNP [dm3] X_3821577_SNP [dm6]	G	C	3.113e^-4	0.857	INTRON ec	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2776285	3L_2776285_SNP [dm3] 3L_2776285_SNP [dm6]	T	C	3.119e^-4	0.857	SYNONYMOUS_CODING Atg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14091591	X_14091591_SNP [dm3] X_14197558_SNP [dm6]	T	G	3.129e^-4	0.857	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12353356	3R_12353356_SNP [dm3] 3R_16527634_SNP [dm6]	T	G	3.130e^-4	0.857	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4751369	X_4751369_DEL [dm3] X_4857336_DEL [dm6]	GTTCAGAG	G	3.131e^-4	0.857	INTRON CG42594
X	13061094	X_13061094_SNP [dm3] X_13167061_SNP [dm6]	A	T	3.149e^-4	0.857	INTRON CG34411
2R	12466540	2R_12466540_SNP [dm3] 2R_16579035_SNP [dm6]	T	A	3.152e^-4	0.857	UPSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2L	10996675	2L_10996675_SNP [dm3] 2L_10996675_SNP [dm6]	T	G	3.153e^-4	0.857	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2R	3976224	2R_3976224_SNP [dm3] 2R_8088719_SNP [dm6]	C	A	3.155e^-4	0.857	NON_SYNONYMOUS_CODING sut2 UPSTREAM sut3	TF binding site mE1_TFBS_inv
X	19358640	X_19358640_SNP [dm3] X_19464607_SNP [dm6]	C	A	3.155e^-4	0.857	UTR_5_PRIME kek5	TF binding site mE1_TFBS_chinmo
X	2569395	X_2569395_SNP [dm3] X_2675362_SNP [dm6]	T	G	3.167e^-4	0.857	UTR_3_PRIME sgg INTRON sgg EXON CR45197	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17663821	X_17663821_SNP [dm3] X_17769788_SNP [dm6]	C	T	3.176e^-4	0.857	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2R	8439063	2R_8439063_SNP [dm3] 2R_12551558_SNP [dm6]	A	G	3.184e^-4	0.857	INTRON fra
2R	19584594	2R_19584594_SNP [dm3] 2R_23697071_SNP [dm6]	C	T	3.188e^-4	0.857	NON_SYNONYMOUS_CODING CG30183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7145030	3R_7145030_SNP [dm3] 3R_11319308_SNP [dm6]	A	T	3.189e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10031012	2R_10031012_SNP [dm3] 2R_14143507_SNP [dm6]	A	G	3.204e^-4	0.857	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	9353599	2R_9353599_SNP [dm3] 2R_13466094_SNP [dm6]	A	G	3.223e^-4	0.857	INTRON arr
2L	9078579	2L_9078579_SNP [dm3] 2L_9078579_SNP [dm6]	T	C	3.227e^-4	0.857	DOWNSTREAM CG12439 INTERGENIC
3L	19947372	3L_19947372_SNP [dm3] 3L_19954272_SNP [dm6]	C	T	3.232e^-4	0.857	UPSTREAM CG42655 DOWNSTREAM CG42263 INTRON Ac76E & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	12714911	3R_12714911_SNP [dm3] 3R_16889189_SNP [dm6]	G	A	3.234e^-4	0.857	INTRON iab-8
2L	8889236	2L_8889236_DEL [dm3] 2L_8889236_DEL [dm6]	GATCTCGTATTATACC...	G	3.236e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	1939528	3L_1939528_SNP [dm3] 3L_1939528_SNP [dm6]	A	G	3.241e^-4	0.857	UPSTREAM CG5687 EXON CR44536
3L	14187888	3L_14187888_DEL [dm3] 3L_14194788_DEL [dm6]	TACAAAGAAGAGTT...	T	3.245e^-4	0.857	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12312741	2L_12312741_SNP [dm3] 2L_12312741_SNP [dm6]	T	A	3.246e^-4	0.857	UTR_3_PRIME aret DOWNSTREAM aret
3L	13939831	3L_13939831_SNP [dm3] 3L_13946731_SNP [dm6]	A	G	3.252e^-4	0.857	INTRON CG32137
3L	10561289	3L_10561289_SNP [dm3] 3L_10568189_SNP [dm6]	C	G	3.261e^-4	0.857	NON_SYNONYMOUS_CODING A2bp1 INTRON A2bp1
3L	9964742	3L_9964742_SNP [dm3] 3L_9971642_SNP [dm6]	T	A	3.262e^-4	0.857	UPSTREAM vnc & 1 other DOWNSTREAM Nc INTRON CG6674	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6703418	2R_6703418_SNP [dm3] 2R_10815913_SNP [dm6]	A	G	3.264e^-4	0.857	DOWNSTREAM dgo & 1 other INTERGENIC
X	19875236	X_19875236_SNP [dm3] X_19981203_SNP [dm6]	C	A	3.272e^-4	0.857	INTERGENIC
3R	25505315	3R_25505315_SNP [dm3] 3R_29679593_SNP [dm6]	C	G	3.272e^-4	0.857	SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15864195	3L_15864195_SNP [dm3] 3L_15871095_SNP [dm6]	A	G	3.275e^-4	0.857	INTRON pHCl
X	5714515	X_5714515_SNP [dm3] X_5820482_SNP [dm6]	T	G	3.277e^-4	0.857	INTRON CG15765
3L	2875573	3L_2875573_SNP [dm3] 3L_2875573_SNP [dm6]	G	A	3.285e^-4	0.857	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9084775	2R_9084775_SNP [dm3] 2R_13197270_SNP [dm6]	C	T	3.288e^-4	0.857	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6003786	2L_6003786_SNP [dm3] 2L_6003786_SNP [dm6]	C	T	3.294e^-4	0.857	SYNONYMOUS_CODING Gal UPSTREAM CR43866 DOWNSTREAM Tsp26A	TF binding site mE1_TFBS_cad
3L	21038407	3L_21038407_SNP [dm3] 3L_21045307_SNP [dm6]	C	G	3.298e^-4	0.857	INTRON siz	TF binding site mE1_TFBS_Trl
3L	6748570	3L_6748570_SNP [dm3] 3L_6755470_SNP [dm6]	G	A	3.307e^-4	0.857	SYNONYMOUS_CODING CG10103	TF binding site mE1_TFBS_cad
2R	15950462	2R_15950462_SNP [dm3] 2R_20062957_SNP [dm6]	A	G	3.311e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	7001701	3R_7001701_SNP [dm3] 3R_11175979_SNP [dm6]	C	A	3.312e^-4	0.857	UPSTREAM Ugt86Dj INTRON Ugt86Dh
3L	16231086	3L_16231086_SNP [dm3] 3L_16237986_SNP [dm6]	C	A	3.314e^-4	0.857	DOWNSTREAM l_3_72Dp INTRON l_3_72Dr
3L	15052172	3L_15052172_DEL [dm3] 3L_15059072_DEL [dm6]	TAAGTGT	T	3.317e^-4	0.857	INTRON Sytbeta
3L	13546011	3L_13546011_SNP [dm3] 3L_13552911_SNP [dm6]	A	C	3.318e^-4	0.857	INTRON bru-3
X	4272464	X_4272464_SNP [dm3] X_4378431_SNP [dm6]	A	G	3.322e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7155352	3R_7155352_SNP [dm3] 3R_11329630_SNP [dm6]	A	G	3.322e^-4	0.857	UTR_5_PRIME pros
2R	16743645	2R_16743645_SNP [dm3] 2R_20856140_SNP [dm6]	C	T	3.333e^-4	0.857	INTERGENIC
3L	17982951	3L_17982951_SNP [dm3] 3L_17989851_SNP [dm6]	T	G	3.337e^-4	0.857	INTRON Eip75B	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8695951	2L_8695951_SNP [dm3] 2L_8695951_SNP [dm6]	A	C	3.339e^-4	0.857	INTRON Hnf4
X	12865927	X_12865927_SNP [dm3] X_12971894_SNP [dm6]	A	T	3.339e^-4	0.857	SYNONYMOUS_CODING CG15721 INTRON CR43636
2L	1385844	2L_1385844_SNP [dm3] 2L_1385844_SNP [dm6]	C	A	3.341e^-4	0.857	INTRON lea
3R	13430198	3R_13430198_SNP [dm3] 3R_17604476_SNP [dm6]	T	C	3.344e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	5221713	3L_5221713_SNP [dm3] 3L_5228613_SNP [dm6]	T	C	3.350e^-4	0.857	INTRON shep
3L	11120053	3L_11120053_SNP [dm3] 3L_11126953_SNP [dm6]	T	G	3.352e^-4	0.857	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	14566265	2L_14566265_SNP [dm3] 2L_14566265_SNP [dm6]	A	T	3.353e^-4	0.857	INTERGENIC
3R	11048991	3R_11048991_SNP [dm3] 3R_15223269_SNP [dm6]	A	C	3.354e^-4	0.857	UPSTREAM Rpb7 DOWNSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	24304032	3L_24304032_SNP [dm3] 3L_24310932_SNP [dm6]	A	C	3.354e^-4	0.857	INTERGENIC
X	13061327	X_13061327_SNP [dm3] X_13167294_SNP [dm6]	A	T	3.355e^-4	0.857	INTRON CG34411
3R	18162870	3R_18162870_SNP [dm3] 3R_22337148_SNP [dm6]	A	G	3.356e^-4	0.857	NON_SYNONYMOUS_CODING CG5388
3L	3780789	3L_3780789_INS [dm3] 3L_3780789_INS [dm6]	G	GCTGCTG	3.361e^-4	0.857	CODON_INSERTION CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18702789	2R_18702789_SNP [dm3] 2R_22815284_SNP [dm6]	T	C	3.364e^-4	0.857	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15789071	3L_15789071_SNP [dm3] 3L_15795971_SNP [dm6]	C	G	3.371e^-4	0.857	INTERGENIC
3L	15865439	3L_15865439_SNP [dm3] 3L_15872339_SNP [dm6]	A	G	3.380e^-4	0.857	INTRON pHCl
2R	9084601	2R_9084601_SNP [dm3] 2R_13197096_SNP [dm6]	C	A	3.390e^-4	0.857	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19127885	3R_19127885_SNP [dm3] 3R_23302163_SNP [dm6]	A	T	3.399e^-4	0.857	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	18951106	2L_18951106_INS [dm3] 2L_18951106_INS [dm6]	A	ATA	3.402e^-4	0.857	UTR_3_PRIME Nedd8 DOWNSTREAM Nedd8 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	1968163	3R_1968163_SNP [dm3] 3R_6142441_SNP [dm6]	A	G	3.409e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6430688	2R_6430688_SNP [dm3] 2R_10543183_SNP [dm6]	G	A	3.409e^-4	0.857	UTR_5_PRIME lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	2000670	3L_2000670_SNP [dm3] 3L_2000670_SNP [dm6]	T	C	3.410e^-4	0.857	INTERGENIC
3R	15409523	3R_15409523_SNP [dm3] 3R_19583801_SNP [dm6]	A	G	3.414e^-4	0.857	INTRON Dys
X	4786089	X_4786089_SNP [dm3] X_4892056_SNP [dm6]	G	A	3.416e^-4	0.857	INTRON CG42594
X	10621546	X_10621546_DEL [dm3] X_10727513_DEL [dm6]	TT	T	3.425e^-4	0.857	INTRON CG32676
3L	7951325	3L_7951325_INS [dm3] 3L_7958225_INS [dm6]	T	TATCGT	3.439e^-4	0.857	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	517196	2L_517196_INS [dm3] 2L_517196_INS [dm6]	A	ACACACACACCAGCAAGCA...	3.439e^-4	0.857	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	25260091	3R_25260091_SNP [dm3] 3R_29434369_SNP [dm6]	A	T	3.440e^-4	0.857	INTRON Ptp99A
2R	14781934	2R_14781934_SNP [dm3] 2R_18894429_SNP [dm6]	T	C	3.445e^-4	0.857	INTRON sano
2L	9271670	2L_9271670_SNP [dm3] 2L_9271670_SNP [dm6]	T	C	3.452e^-4	0.857	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	4300475	2L_4300475_SNP [dm3] 2L_4300475_SNP [dm6]	T	G	3.460e^-4	0.857	INTRON tutl
3R	20379695	3R_20379695_SNP [dm3] 3R_24553973_SNP [dm6]	A	G	3.463e^-4	0.857	INTRON Esyt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13156121	2R_13156121_SNP [dm3] 2R_17268616_SNP [dm6]	T	C	3.472e^-4	0.857	INTRON mbl
3L	5402739	3L_5402739_SNP [dm3] 3L_5409639_SNP [dm6]	T	C	3.480e^-4	0.857	INTERGENIC
3R	15245883	3R_15245883_DEL [dm3] 3R_19420161_DEL [dm6]	CTGATACACATCATAGCCGA...	C	3.483e^-4	0.857	INTRON CG31221
X	12136692	X_12136692_SNP [dm3] X_12242659_SNP [dm6]	C	T	3.484e^-4	0.857	INTRON Ten-a
3R	7337157	3R_7337157_SNP [dm3] 3R_11511435_SNP [dm6]	C	G	3.484e^-4	0.857	INTERGENIC
3L	7754193	3L_7754193_SNP [dm3] 3L_7761093_SNP [dm6]	G	A	3.486e^-4	0.857	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
2R	626923	2R_626923_SNP [dm3] 2R_4739418_SNP [dm6]	G	A	3.493e^-4	0.857	INTERGENIC
3L	9933988	3L_9933988_SNP [dm3] 3L_9940888_SNP [dm6]	A	C	3.493e^-4	0.857	INTRON CG34356
X	15151166	X_15151166_SNP [dm3] X_15257133_SNP [dm6]	G	T	3.494e^-4	0.857	INTERGENIC
3L	24051946	3L_24051946_SNP [dm3] 3L_24058846_SNP [dm6]	T	A	3.497e^-4	0.857	INTERGENIC
3L	5279245	3L_5279245_SNP [dm3] 3L_5286145_SNP [dm6]	A	T	3.500e^-4	0.857	INTERGENIC
2L	5112167	2L_5112167_SNP [dm3] 2L_5112167_SNP [dm6]	T	C	3.503e^-4	0.857	INTRON Msp300
2R	8798268	2R_8798268_DEL [dm3] 2R_12910763_DEL [dm6]	ATTGG	A	3.508e^-4	0.857	INTERGENIC
2R	15193385	2R_15193385_SNP [dm3] 2R_19305880_SNP [dm6]	A	G	3.512e^-4	0.857	SYNONYMOUS_CODING CG7461	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5154669	3R_5154669_SNP [dm3] 3R_9328947_SNP [dm6]	A	T	3.513e^-4	0.857	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2R	14957436	2R_14957436_SNP [dm3] 2R_19069931_SNP [dm6]	A	G	3.513e^-4	0.857	INTRON 5-HT1A
3L	1015967	3L_1015967_SNP [dm3] 3L_1015967_SNP [dm6]	A	T	3.515e^-4	0.857	INTRON trio
2L	9302733	2L_9302733_SNP [dm3] 2L_9302733_SNP [dm6]	A	T	3.522e^-4	0.858	DOWNSTREAM Ggamma30A INTERGENIC
3R	14319972	3R_14319972_SNP [dm3] 3R_18494250_SNP [dm6]	T	C	3.535e^-4	0.858	INTRON fru
3L	17933060	3L_17933060_SNP [dm3] 3L_17939960_SNP [dm6]	G	A	3.542e^-4	0.858	INTRON CG43174
3L	13179361	3L_13179361_SNP [dm3] 3L_13186261_SNP [dm6]	G	A	3.546e^-4	0.858	INTERGENIC
2L	5904050	2L_5904050_SNP [dm3] 2L_5904050_SNP [dm6]	T	C	3.547e^-4	0.858	NON_SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22397165	3L_22397165_SNP [dm3] 3L_22404065_SNP [dm6]	T	G	3.551e^-4	0.858	INTRON Ten-m	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	20009355	X_20009355_SNP [dm3] X_20115322_SNP [dm6]	T	G	3.552e^-4	0.858	INTERGENIC
3R	17351237	3R_17351237_SNP [dm3] 3R_21525515_SNP [dm6]	C	T	3.559e^-4	0.858	INTRON CG7956	TF binding site mE1_TFBS_cad
2L	9346030	2L_9346030_SNP [dm3] 2L_9346030_SNP [dm6]	T	A	3.569e^-4	0.858	INTERGENIC
X	1816617	X_1816617_SNP [dm3] X_1922584_SNP [dm6]	C	T	3.573e^-4	0.858	SYNONYMOUS_CODING eIF2B-epsilon UPSTREAM Ocrl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8584488	2L_8584488_SNP [dm3] 2L_8584488_SNP [dm6]	A	C	3.584e^-4	0.858	INTRON Sema-1a
2L	22033049	2L_22033049_SNP [dm3] 2L_22033049_SNP [dm6]	T	G	3.594e^-4	0.858	EXON CR45335	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	11949219	3L_11949219_SNP [dm3] 3L_11956119_SNP [dm6]	A	T	3.597e^-4	0.858	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	3093539	3L_3093539_SNP [dm3] 3L_3093539_SNP [dm6]	G	A	3.605e^-4	0.858	SYNONYMOUS_CODING Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9378834	2L_9378834_SNP [dm3] 2L_9378834_SNP [dm6]	A	G	3.606e^-4	0.858	INTRON Shawl
X	13064682	X_13064682_SNP [dm3] X_13170649_SNP [dm6]	G	A	3.614e^-4	0.858	INTRON CG34411
3L	2409561	3L_2409561_SNP [dm3] 3L_2409561_SNP [dm6]	A	G	3.615e^-4	0.858	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	17753769	X_17753769_SNP [dm3] X_17859736_SNP [dm6]	T	G	3.615e^-4	0.858	SYNONYMOUS_CODING Arp8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19928420	2L_19928420_SNP [dm3] 2L_19928420_SNP [dm6]	T	G	3.622e^-4	0.858	INTRON sick
2R	16428360	2R_16428360_SNP [dm3] 2R_20540855_SNP [dm6]	C	G	3.624e^-4	0.858	UPSTREAM CG13428 EXON CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6073548	3L_6073548_SNP [dm3] 3L_6080448_SNP [dm6]	T	A	3.627e^-4	0.858	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6911147	X_6911147_SNP [dm3] X_7017114_SNP [dm6]	G	C	3.627e^-4	0.858	INTERGENIC
2R	5401507	2R_5401507_SNP [dm3] 2R_9514002_SNP [dm6]	A	G	3.634e^-4	0.858	INTRON brp
2R	13156606	2R_13156606_SNP [dm3] 2R_17269101_SNP [dm6]	A	G	3.638e^-4	0.858	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
2R	16922027	2R_16922027_SNP [dm3] 2R_21034522_SNP [dm6]	C	G	3.640e^-4	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4014979	2R_4014979_SNP [dm3] 2R_8127474_SNP [dm6]	A	C	3.643e^-4	0.858	UPSTREAM Socs44A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	4251383	3R_4251383_SNP [dm3] 3R_8425661_SNP [dm6]	A	G	3.646e^-4	0.858	INTRON CG45263
3L	14907805	3L_14907805_SNP [dm3] 3L_14914705_SNP [dm6]	A	G	3.648e^-4	0.858	INTRON DCX-EMAP
2R	18051221	2R_18051221_SNP [dm3] 2R_22163716_SNP [dm6]	G	A	3.655e^-4	0.858	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	18051228	2R_18051228_SNP [dm3] 2R_22163723_SNP [dm6]	A	T	3.655e^-4	0.858	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	575769	3L_575769_SNP [dm3] 3L_575769_SNP [dm6]	T	A	3.661e^-4	0.858	UTR_3_PRIME hipk
2L	3775413	2L_3775413_SNP [dm3] 2L_3775413_SNP [dm6]	T	A	3.670e^-4	0.859	INTRON bowl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10028090	X_10028090_DEL [dm3] X_10134057_DEL [dm6]	CCGCAGCAGCCGCAGCAACA...	C	3.676e^-4	0.86	INTRON CR44894
3L	14338211	3L_14338211_SNP [dm3] 3L_14345111_SNP [dm6]	G	T	3.686e^-4	0.86	INTRON fz
X	2436438	X_2436438_SNP [dm3] X_2542405_SNP [dm6]	G	A	3.696e^-4	0.86	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8490311	2R_8490311_SNP [dm3] 2R_12602806_SNP [dm6]	T	G	3.712e^-4	0.86	INTRON Amph
3R	22305639	3R_22305639_SNP [dm3] 3R_26479917_SNP [dm6]	T	C	3.719e^-4	0.86	INTRON plum
2R	10372144	2R_10372144_SNP [dm3] 2R_14484639_SNP [dm6]	C	G	3.734e^-4	0.86	INTRON L	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17773132	2R_17773132_DEL [dm3] 2R_21885627_DEL [dm6]	AGAAA	A	3.738e^-4	0.86	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12273768	X_12273768_SNP [dm3] X_12379735_SNP [dm6]	G	C	3.745e^-4	0.86	INTERGENIC
3L	2159287	3L_2159287_SNP [dm3] 3L_2159287_SNP [dm6]	T	C	3.750e^-4	0.86	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14477980	2R_14477980_SNP [dm3] 2R_18590475_SNP [dm6]	C	A	3.772e^-4	0.86	INTRON GEFmeso
3L	23596897	3L_23596897_DEL [dm3] 3L_23603797_DEL [dm6]	TA	T	3.783e^-4	0.86	INTRON AGO3	transposable element FlyBase
2L	13993931	2L_13993931_SNP [dm3] 2L_13993931_SNP [dm6]	C	T	3.794e^-4	0.86	INTRON rk
X	17663872	X_17663872_SNP [dm3] X_17769839_SNP [dm6]	G	T	3.795e^-4	0.86	INTRON unc-4
3R	11048990	3R_11048990_SNP [dm3] 3R_15223268_SNP [dm6]	A	C	3.796e^-4	0.86	UPSTREAM Rpb7 DOWNSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	2480636	X_2480636_SNP [dm3] X_2586603_SNP [dm6]	G	T	3.798e^-4	0.86	UPSTREAM CG13760 INTRON wds	TF binding site BDTNP1_TFBS_dl
2R	7105953	2R_7105953_SNP [dm3] 2R_11218448_SNP [dm6]	C	T	3.799e^-4	0.86	INTRON CG9084	TF binding site BDTNP1_TFBS_dl
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	3.801e^-4	0.86	INTERGENIC
X	4416177	X_4416177_SNP [dm3] X_4522144_SNP [dm6]	A	G	3.802e^-4	0.86	INTRON CR32773
3L	9365340	3L_9365340_SNP [dm3] 3L_9372240_SNP [dm6]	G	A	3.817e^-4	0.86	SYNONYMOUS_CODING Hsp67Bc UPSTREAM Hsp67Bb & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	3.819e^-4	0.86	INTERGENIC
3L	11923458	3L_11923458_SNP [dm3] 3L_11930358_SNP [dm6]	C	T	3.821e^-4	0.86	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
X	12781763	X_12781763_SNP [dm3] X_12887730_SNP [dm6]	G	C	3.821e^-4	0.86	INTRON Pde9
X	12874880	X_12874880_SNP [dm3] X_12980847_SNP [dm6]	A	G	3.821e^-4	0.86	INTERGENIC
2R	16584521	2R_16584521_SNP [dm3] 2R_20697016_SNP [dm6]	C	T	3.826e^-4	0.86	INTERGENIC
2L	9078553	2L_9078553_SNP [dm3] 2L_9078553_SNP [dm6]	T	A	3.827e^-4	0.86	DOWNSTREAM CG12439 INTERGENIC
3L	23375844	3L_23375844_DEL [dm3] 3L_23382744_DEL [dm6]	AA	A	3.828e^-4	0.86	INTERGENIC	transposable element FlyBase
2R	9241782	2R_9241782_SNP [dm3] 2R_13354277_SNP [dm6]	A	G	3.830e^-4	0.86	SYNONYMOUS_CODING CG17048 EXON CR44206
X	19358218	X_19358218_SNP [dm3] X_19464185_SNP [dm6]	T	A	3.835e^-4	0.86	SPLICE_SITE_REGION kek5 INTRON kek5
3L	14187940	3L_14187940_SNP [dm3] 3L_14194840_SNP [dm6]	T	C	3.837e^-4	0.86	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7869141	3L_7869141_SNP [dm3] 3L_7876041_SNP [dm6]	A	T	3.840e^-4	0.86	INTRON CG32365
X	10028879	X_10028879_SNP [dm3] X_10134846_SNP [dm6]	G	A	3.842e^-4	0.86	INTRON CR44894 & 1 other
3L	15362488	3L_15362488_SNP [dm3] 3L_15369388_SNP [dm6]	G	C	3.857e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15362491	3L_15362491_SNP [dm3] 3L_15369391_SNP [dm6]	A	T	3.857e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15612283	2L_15612283_SNP [dm3] 2L_15612283_SNP [dm6]	G	C	3.867e^-4	0.86	UPSTREAM CG15255 DOWNSTREAM CG11864 INTERGENIC
3L	11394416	3L_11394416_SNP [dm3] 3L_11401316_SNP [dm6]	G	T	3.875e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7750883	3L_7750883_SNP [dm3] 3L_7757783_SNP [dm6]	A	T	3.875e^-4	0.86	INTRON CG32373
2L	8584456	2L_8584456_SNP [dm3] 2L_8584456_SNP [dm6]	C	T	3.878e^-4	0.86	INTRON Sema-1a
3L	5445566	3L_5445566_INS [dm3] 3L_5452466_INS [dm6]	A	AC	3.879e^-4	0.86	INTERGENIC
2R	10373097	2R_10373097_SNP [dm3] 2R_14485592_SNP [dm6]	T	A	3.879e^-4	0.86	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21719538	3L_21719538_SNP [dm3] 3L_21726438_SNP [dm6]	C	G	3.880e^-4	0.86	NON_SYNONYMOUS_CODING CG11247 UTR_5_PRIME CG11247	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14420177	2L_14420177_SNP [dm3] 2L_14420177_SNP [dm6]	T	C	3.888e^-4	0.86	INTERGENIC
3L	22969815	3L_22969815_SNP [dm3] 3L_22976715_SNP [dm6]	G	T	3.893e^-4	0.86	INTERGENIC	transposable element FlyBase
2L	4337127	2L_4337127_SNP [dm3] 2L_4337127_SNP [dm6]	C	T	3.899e^-4	0.86	INTRON Atet	TF binding site BDTNP1_TFBS_da
3L	2158881	3L_2158881_SNP [dm3] 3L_2158881_SNP [dm6]	G	A	3.910e^-4	0.86	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_inv
3R	10036028	3R_10036028_SNP [dm3] 3R_14210306_SNP [dm6]	A	T	3.914e^-4	0.86	INTRON Dop1R1
X	4273670	X_4273670_SNP [dm3] X_4379637_SNP [dm6]	G	A	3.921e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_sens
3R	5119061	3R_5119061_SNP [dm3] 3R_9293339_SNP [dm6]	A	G	3.923e^-4	0.86	DOWNSTREAM CG8861 INTERGENIC
3R	23064056	3R_23064056_SNP [dm3] 3R_27238334_SNP [dm6]	T	C	3.926e^-4	0.86	UPSTREAM CG31064 & 1 other INTRON CG31064	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8547792	2L_8547792_SNP [dm3] 2L_8547792_SNP [dm6]	A	T	3.930e^-4	0.86	INTRON Sema-1a
2R	16182170	2R_16182170_SNP [dm3] 2R_20294665_SNP [dm6]	A	T	3.932e^-4	0.86	EXON CR44639
3L	10816650	3L_10816650_SNP [dm3] 3L_10823550_SNP [dm6]	G	A	3.948e^-4	0.86	INTERGENIC
2R	9686527	2R_9686527_SNP [dm3] 2R_13799022_SNP [dm6]	A	G	3.955e^-4	0.86	INTRON Cpr50Cb
2R	8838436	2R_8838436_SNP [dm3] 2R_12950931_SNP [dm6]	G	A	3.957e^-4	0.86	SYNONYMOUS_CODING CG44250 UPSTREAM CG44251 INTRON CG44251	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	24114167	3L_24114167_SNP [dm3] 3L_24121067_SNP [dm6]	T	G	3.969e^-4	0.86	INTRON Snap25
3R	22884680	3R_22884680_SNP [dm3] 3R_27058958_SNP [dm6]	A	G	3.972e^-4	0.86	UTR_3_PRIME Nep5 INTRON Nep5	TF binding site mE1_TFBS_chinmo
3L	8163677	3L_8163677_SNP [dm3] 3L_8170577_SNP [dm6]	A	T	3.974e^-4	0.86	DOWNSTREAM RecQ4 INTERGENIC	TF binding site mE1_TFBS_cnc
X	3141302	X_3141302_SNP [dm3] X_3247269_SNP [dm6]	G	T	3.975e^-4	0.86	INTRON dnc
3L	16231051	3L_16231051_SNP [dm3] 3L_16237951_SNP [dm6]	T	A	3.978e^-4	0.86	DOWNSTREAM l_3_72Dp INTRON l_3_72Dr
3L	2349997	3L_2349997_SNP [dm3] 3L_2349997_SNP [dm6]	A	C	3.986e^-4	0.86	INTERGENIC
3L	21748776	3L_21748776_SNP [dm3] 3L_21755676_SNP [dm6]	G	T	3.986e^-4	0.86	INTRON Syn1
3R	7565253	3R_7565253_SNP [dm3] 3R_11739531_SNP [dm6]	G	C	3.992e^-4	0.86	NON_SYNONYMOUS_CODING Blm
2R	19566122	2R_19566122_SNP [dm3] 2R_23678599_SNP [dm6]	A	G	3.993e^-4	0.86	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9675922	2R_9675922_SNP [dm3] 2R_13788417_SNP [dm6]	A	C	4.007e^-4	0.86	DOWNSTREAM Cpr50Ca INTERGENIC
3L	9252662	3L_9252662_SNP [dm3] 3L_9259562_SNP [dm6]	G	C	4.009e^-4	0.86	INTRON GluRIB
2L	4332270	2L_4332270_SNP [dm3] 2L_4332270_SNP [dm6]	C	T	4.012e^-4	0.86	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332271	2L_4332271_SNP [dm3] 2L_4332271_SNP [dm6]	G	A	4.012e^-4	0.86	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332331	2L_4332331_SNP [dm3] 2L_4332331_SNP [dm6]	G	A	4.012e^-4	0.86	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4332337	2L_4332337_SNP [dm3] 2L_4332337_SNP [dm6]	A	T	4.012e^-4	0.86	DOWNSTREAM CG16857 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27220142	3R_27220142_SNP [dm3] 3R_31394420_SNP [dm6]	G	C	4.014e^-4	0.86	NON_SYNONYMOUS_CODING CG31002 UPSTREAM CG31204
3L	5566142	3L_5566142_SNP [dm3] 3L_5573042_SNP [dm6]	A	C	4.021e^-4	0.86	INTRON Msr-110
3R	21624469	3R_21624469_SNP [dm3] 3R_25798747_SNP [dm6]	T	C	4.023e^-4	0.86	UPSTREAM CR43847 INTERGENIC
3R	22226817	3R_22226817_SNP [dm3] 3R_26401095_SNP [dm6]	C	A	4.027e^-4	0.86	DOWNSTREAM ppk15 INTERGENIC
X	11289990	X_11289990_SNP [dm3] X_11395957_SNP [dm6]	C	T	4.030e^-4	0.86	NON_SYNONYMOUS_CODING dlg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2269444	3L_2269444_SNP [dm3] 3L_2269444_SNP [dm6]	G	A	4.030e^-4	0.86	NON_SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4333706	2L_4333706_SNP [dm3] 2L_4333706_SNP [dm6]	T	C	4.030e^-4	0.86	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
X	9046298	X_9046298_SNP [dm3] X_9152265_SNP [dm6]	C	G	4.038e^-4	0.86	DOWNSTREAM His3.3B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3989131	X_3989131_SNP [dm3] X_4095098_SNP [dm6]	G	A	4.043e^-4	0.86	INTERGENIC
3R	1980795	3R_1980795_SNP [dm3] 3R_6155073_SNP [dm6]	C	G	4.050e^-4	0.86	INTRON CG31559
3R	19900278	3R_19900278_SNP [dm3] 3R_24074556_SNP [dm6]	G	C	4.057e^-4	0.86	INTRON 4EHP
X	17021883	X_17021883_SNP [dm3] X_17127850_SNP [dm6]	C	G	4.057e^-4	0.86	SYNONYMOUS_CODING CG5004
X	13128006	X_13128006_SNP [dm3] X_13233973_SNP [dm6]	C	T	4.058e^-4	0.86	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9046985	2L_9046985_SNP [dm3] 2L_9046985_SNP [dm6]	T	A	4.074e^-4	0.86	INTERGENIC
2L	9281728	2L_9281728_SNP [dm3] 2L_9281728_SNP [dm6]	T	C	4.079e^-4	0.86	INTRON Ggamma30A
3R	9871771	3R_9871771_SNP [dm3] 3R_14046049_SNP [dm6]	A	T	4.081e^-4	0.86	INTERGENIC
3L	18060730	3L_18060730_SNP [dm3] 3L_18067630_SNP [dm6]	G	A	4.087e^-4	0.86	INTERGENIC
3L	21498360	3L_21498360_SNP [dm3] 3L_21505260_SNP [dm6]	A	G	4.092e^-4	0.86	SYNONYMOUS_CODING Glg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11999522	3L_11999522_SNP [dm3] 3L_12006422_SNP [dm6]	G	T	4.103e^-4	0.86	INTRON CG6928
2L	10995579	2L_10995579_SNP [dm3] 2L_10995579_SNP [dm6]	T	C	4.109e^-4	0.86	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
2L	14710902	2L_14710902_SNP [dm3] 2L_14710902_SNP [dm6]	A	T	4.123e^-4	0.86	INTERGENIC
3L	8024865	3L_8024865_SNP [dm3] 3L_8031765_SNP [dm6]	A	T	4.127e^-4	0.86	INTRON nmo
2R	10544276	2R_10544276_SNP [dm3] 2R_14656771_SNP [dm6]	G	A	4.130e^-4	0.86	DOWNSTREAM Adgf-E INTERGENIC
X	5969484	X_5969484_SNP [dm3] X_6075451_SNP [dm6]	G	A	4.132e^-4	0.86	UPSTREAM Tsp5D DOWNSTREAM CG4666 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	7280726	X_7280726_SNP [dm3] X_7386693_SNP [dm6]	C	T	4.136e^-4	0.86	INTRON CG1677 & 1 other
3L	10560151	3L_10560151_SNP [dm3] 3L_10567051_SNP [dm6]	G	A	4.153e^-4	0.86	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8575981	2R_8575981_SNP [dm3] 2R_12688476_SNP [dm6]	A	C	4.153e^-4	0.86	NON_SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18166380	X_18166380_SNP [dm3] X_18272347_SNP [dm6]	G	C	4.155e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7485563	2L_7485563_SNP [dm3] 2L_7485563_SNP [dm6]	G	T	4.158e^-4	0.86	INTRON Ziz
2L	15040579	2L_15040579_INS [dm3] 2L_15040579_INS [dm6]	A	ATTGGA	4.167e^-4	0.86	INTRON Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15764980	2L_15764980_SNP [dm3] 2L_15764980_SNP [dm6]	G	A	4.179e^-4	0.86	SYNONYMOUS_CODING CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12876389	X_12876389_SNP [dm3] X_12982356_SNP [dm6]	T	C	4.190e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9976769	3L_9976769_SNP [dm3] 3L_9983669_SNP [dm6]	C	A	4.193e^-4	0.86	INTRON dpr6
X	16594537	X_16594537_SNP [dm3] X_16700504_SNP [dm6]	G	A	4.198e^-4	0.86	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
3L	11967938	3L_11967938_SNP [dm3] 3L_11974838_SNP [dm6]	A	G	4.210e^-4	0.86	UPSTREAM CG14125 INTERGENIC
3L	11095933	3L_11095933_DEL [dm3] 3L_11102833_DEL [dm6]	AAGTGTCTTCCGACGA...	A	4.211e^-4	0.86	DOWNSTREAM CG32071 INTRON Elo68alpha	TF binding site mE1_TFBS_chinmo
3R	26216686	3R_26216686_DEL [dm3] 3R_30390964_DEL [dm6]	TT	T	4.219e^-4	0.86	DOWNSTREAM Fer2LCH INTERGENIC
2L	9152855	2L_9152855_SNP [dm3] 2L_9152855_SNP [dm6]	C	G	4.225e^-4	0.86	INTRON CG32982
X	13128018	X_13128018_SNP [dm3] X_13233985_SNP [dm6]	T	A	4.236e^-4	0.86	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	13064043	X_13064043_SNP [dm3] X_13170010_SNP [dm6]	C	T	4.239e^-4	0.86	INTRON CG34411
2L	9346075	2L_9346075_SNP [dm3] 2L_9346075_SNP [dm6]	G	C	4.242e^-4	0.86	INTERGENIC
3L	18272201	3L_18272201_SNP [dm3] 3L_18279101_SNP [dm6]	C	T	4.243e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	11234363	X_11234363_SNP [dm3] X_11340330_SNP [dm6]	T	A	4.246e^-4	0.86	UTR_5_PRIME CG34348 UPSTREAM Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23003446	3R_23003446_SNP [dm3] 3R_27177724_SNP [dm6]	A	T	4.248e^-4	0.86	INTRON Ser	TF binding site mE1_TFBS_cad
X	7439736	X_7439736_SNP [dm3] X_7545703_SNP [dm6]	C	T	4.254e^-4	0.86	INTRON CG32719
3R	13747223	3R_13747223_SNP [dm3] 3R_17921501_SNP [dm6]	G	A	4.255e^-4	0.86	INTRON cpo
X	5017341	X_5017341_SNP [dm3] X_5123308_SNP [dm6]	G	A	4.256e^-4	0.86	INTRON rg & 1 other
3L	13545999	3L_13545999_SNP [dm3] 3L_13552899_SNP [dm6]	A	G	4.259e^-4	0.86	INTRON bru-3
2R	16198086	2R_16198086_SNP [dm3] 2R_20310581_SNP [dm6]	A	G	4.260e^-4	0.86	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6745448	2R_6745448_SNP [dm3] 2R_10857943_SNP [dm6]	A	G	4.262e^-4	0.86	INTRON CG30015
2R	20053251	2R_20053251_SNP [dm3] 2R_24165728_SNP [dm6]	C	T	4.264e^-4	0.86	INTRON CG3328
2L	19826626	2L_19826626_SNP [dm3] 2L_19826626_SNP [dm6]	G	A	4.280e^-4	0.86	UTR_5_PRIME sick UPSTREAM sick INTRON sick
2R	15034521	2R_15034521_SNP [dm3] 2R_19147016_SNP [dm6]	A	G	4.285e^-4	0.86	INTRON ena
2R	19196461	2R_19196461_SNP [dm3] 2R_23308938_SNP [dm6]	C	G	4.285e^-4	0.86	SYNONYMOUS_CODING Prosbeta5R1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7106078	2R_7106078_SNP [dm3] 2R_11218573_SNP [dm6]	G	A	4.285e^-4	0.86	UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl
3L	575771	3L_575771_SNP [dm3] 3L_575771_SNP [dm6]	A	G	4.293e^-4	0.86	UTR_3_PRIME hipk
3L	13939838	3L_13939838_INS [dm3] 3L_13946738_INS [dm6]	T	TT	4.301e^-4	0.86	INTRON CG32137
3L	15135128	3L_15135128_SNP [dm3] 3L_15142028_SNP [dm6]	G	A	4.305e^-4	0.86	UPSTREAM CR45396 INTRON Pdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	517605	2L_517605_SNP [dm3] 2L_517605_SNP [dm6]	A	T	4.313e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	10084073	3L_10084073_SNP [dm3] 3L_10090973_SNP [dm6]	T	C	4.318e^-4	0.86	SYNONYMOUS_CODING CG32053 INTRON dpr6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22359338	X_22359338_SNP [dm3] X_22957502_SNP [dm6]	C	T	4.330e^-4	0.86	DOWNSTREAM CR45502 INTERGENIC
2L	5966770	2L_5966770_SNP [dm3] 2L_5966770_SNP [dm6]	T	A	4.332e^-4	0.86	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11175124	3L_11175124_SNP [dm3] 3L_11182024_SNP [dm6]	T	C	4.333e^-4	0.86	INTRON GlcAT-P
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	4.339e^-4	0.86	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13156981	X_13156981_SNP [dm3] X_13262948_SNP [dm6]	T	A	4.340e^-4	0.86	UTR_3_PRIME HDAC4 DOWNSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl
3L	16649751	3L_16649751_SNP [dm3] 3L_16656651_SNP [dm6]	C	A	4.348e^-4	0.86	INTRON Baldspot
2R	9446033	2R_9446033_SNP [dm3] 2R_13558528_SNP [dm6]	C	A	4.360e^-4	0.86	UPSTREAM CG13334 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10298789	3R_10298789_SNP [dm3] 3R_14473067_SNP [dm6]	C	A	4.367e^-4	0.86	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16198095	2R_16198095_SNP [dm3] 2R_20310590_SNP [dm6]	A	G	4.371e^-4	0.86	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21922083	3L_21922083_SNP [dm3] 3L_21928983_SNP [dm6]	A	G	4.381e^-4	0.86	UTR_3_PRIME mub
3L	10563088	3L_10563088_SNP [dm3] 3L_10569988_SNP [dm6]	A	T	4.385e^-4	0.86	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7720558	3R_7720558_SNP [dm3] 3R_11894836_SNP [dm6]	T	C	4.389e^-4	0.86	SYNONYMOUS_CODING Cad87A
3L	10569054	3L_10569054_SNP [dm3] 3L_10575954_SNP [dm6]	T	C	4.391e^-4	0.86	INTRON A2bp1
3R	12101807	3R_12101807_SNP [dm3] 3R_16276085_SNP [dm6]	C	T	4.401e^-4	0.86	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6990086	2L_6990086_SNP [dm3] 2L_6990086_SNP [dm6]	A	T	4.403e^-4	0.86	INTRON uif
2R	2836126	2R_2836126_SNP [dm3] 2R_6948621_SNP [dm6]	G	T	4.403e^-4	0.86	UPSTREAM tRNA:K2:42Eb & 2 others DOWNSTREAM tRNA:K2:42Ed INTRON mim & 1 other	transposable element FlyBase
2R	16730592	2R_16730592_DEL [dm3] 2R_20843087_DEL [dm6]	TT	T	4.406e^-4	0.86	INTERGENIC
2L	16445613	2L_16445613_SNP [dm3] 2L_16445613_SNP [dm6]	G	A	4.408e^-4	0.86	SYNONYMOUS_CODING Idgf1 INTRON CG5888
2L	15763292	2L_15763292_SNP [dm3] 2L_15763292_SNP [dm6]	T	C	4.413e^-4	0.86	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2575377	3L_2575377_SNP [dm3] 3L_2575377_SNP [dm6]	T	A	4.417e^-4	0.86	INTRON msn
2L	15763302	2L_15763302_SNP [dm3] 2L_15763302_SNP [dm6]	G	A	4.424e^-4	0.86	UPSTREAM Gli & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	21907023	X_21907023_SNP [dm3] X_22505187_SNP [dm6]	C	G	4.427e^-4	0.86	SYNONYMOUS_CODING l_1_G0196 DOWNSTREAM l_1_G0196
2R	16892808	2R_16892808_SNP [dm3] 2R_21005303_SNP [dm6]	C	T	4.435e^-4	0.86	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
2R	11064542	2R_11064542_SNP [dm3] 2R_15177037_SNP [dm6]	T	G	4.438e^-4	0.86	INTRON igl
3L	23946947	3L_23946947_SNP [dm3] 3L_23953847_SNP [dm6]	T	G	4.439e^-4	0.86	INTRON CG40470
3L	7430629	3L_7430629_SNP [dm3] 3L_7437529_SNP [dm6]	C	T	4.444e^-4	0.86	UPSTREAM CG14835 DOWNSTREAM sphinx1 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3141345	X_3141345_SNP [dm3] X_3247312_SNP [dm6]	G	T	4.452e^-4	0.86	INTRON dnc
2L	2712061	2L_2712061_SNP [dm3] 2L_2712061_SNP [dm6]	G	A	4.459e^-4	0.86	NON_SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
3L	4369813	3L_4369813_SNP [dm3] 3L_4369813_SNP [dm6]	T	G	4.467e^-4	0.86	INTRON DopEcR
3R	12353413	3R_12353413_SNP [dm3] 3R_16527691_SNP [dm6]	A	G	4.468e^-4	0.86	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17663829	X_17663829_SNP [dm3] X_17769796_SNP [dm6]	C	A	4.470e^-4	0.86	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
3R	1570013	3R_1570013_SNP [dm3] 3R_5744291_SNP [dm6]	A	C	4.481e^-4	0.86	INTRON Madm
2L	11478767	2L_11478767_SNP [dm3] 2L_11478767_SNP [dm6]	T	C	4.482e^-4	0.86	INTERGENIC
3R	10372397	3R_10372397_SNP [dm3] 3R_14546675_SNP [dm6]	T	C	4.487e^-4	0.86	INTRON Pde6
X	10967323	X_10967323_SNP [dm3] X_11073290_SNP [dm6]	G	A	4.490e^-4	0.86	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3L	11335964	3L_11335964_SNP [dm3] 3L_11342864_SNP [dm6]	A	G	4.492e^-4	0.86	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	7880539	3R_7880539_SNP [dm3] 3R_12054817_SNP [dm6]	C	A	4.494e^-4	0.86	INTERGENIC
2L	3412898	2L_3412898_SNP [dm3] 2L_3412898_SNP [dm6]	G	A	4.500e^-4	0.86	INTRON pgant2
2L	15763104	2L_15763104_SNP [dm3] 2L_15763104_SNP [dm6]	C	A	4.504e^-4	0.86	UPSTREAM Gli INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7280721	X_7280721_SNP [dm3] X_7386688_SNP [dm6]	A	G	4.516e^-4	0.86	INTRON CG1677 & 1 other
3L	23607218	3L_23607218_SNP [dm3] 3L_23614118_SNP [dm6]	T	G	4.521e^-4	0.86	INTRON AGO3	transposable element FlyBase
2L	14217478	2L_14217478_SNP [dm3] 2L_14217478_SNP [dm6]	G	A	4.524e^-4	0.86	INTRON Dyrk2
3R	26216644	3R_26216644_DEL [dm3] 3R_30390922_DEL [dm6]	GTTG	G	4.527e^-4	0.86	DOWNSTREAM Fer2LCH INTERGENIC
2R	18381157	2R_18381157_SNP [dm3] 2R_22493652_SNP [dm6]	T	C	4.534e^-4	0.86	SYNONYMOUS_CODING CG4610 DOWNSTREAM px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19009591	3R_19009591_SNP [dm3] 3R_23183869_SNP [dm6]	T	G	4.536e^-4	0.86	SYNONYMOUS_CODING Irk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2039894	3L_2039894_SNP [dm3] 3L_2039894_SNP [dm6]	T	C	4.537e^-4	0.86	UTR_3_PRIME sls
2R	3552834	2R_3552834_SNP [dm3] 2R_7665329_SNP [dm6]	G	A	4.541e^-4	0.86	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	15238993	2R_15238993_SNP [dm3] 2R_19351488_SNP [dm6]	C	G	4.545e^-4	0.86	INTRON Rgk1
2L	7359607	2L_7359607_SNP [dm3] 2L_7359607_SNP [dm6]	T	C	4.547e^-4	0.86	INTERGENIC
3L	9546163	3L_9546163_SNP [dm3] 3L_9553063_SNP [dm6]	T	A	4.557e^-4	0.86	UTR_5_PRIME CG42673
3R	21140375	3R_21140375_SNP [dm3] 3R_25314653_SNP [dm6]	T	C	4.576e^-4	0.86	UTR_3_PRIME CG10559 UPSTREAM CG31087
X	17663978	X_17663978_SNP [dm3] X_17769945_SNP [dm6]	A	C	4.587e^-4	0.86	INTRON unc-4
3L	15363437	3L_15363437_SNP [dm3] 3L_15370337_SNP [dm6]	C	G	4.589e^-4	0.86	INTERGENIC
X	2578822	X_2578822_DEL [dm3] X_2684789_DEL [dm6]	AGCCCCC	G	4.589e^-4	0.86	UPSTREAM CR44470 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	2578830	X_2578830_INS [dm3] X_2684797_INS [dm6]	A	ACAGAAAC	4.589e^-4	0.86	UPSTREAM CR44470 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10563127	3L_10563127_SNP [dm3] 3L_10570027_SNP [dm6]	T	C	4.592e^-4	0.86	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8865000	2R_8865000_SNP [dm3] 2R_12977495_SNP [dm6]	C	A	4.594e^-4	0.86	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17206546	2L_17206546_SNP [dm3] 2L_17206546_SNP [dm6]	G	C	4.594e^-4	0.86	INTRON beat-IIIc
X	2687088	X_2687088_SNP [dm3] X_2793055_SNP [dm6]	C	A	4.595e^-4	0.86	NON_SYNONYMOUS_CODING w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21936224	3L_21936224_SNP [dm3] 3L_21943124_SNP [dm6]	C	G	4.607e^-4	0.86	INTRON CG14562
2R	9673744	2R_9673744_SNP [dm3] 2R_13786239_SNP [dm6]	T	A	4.609e^-4	0.86	INTRON Cpr50Ca
2L	7341201	2L_7341201_SNP [dm3] 2L_7341201_SNP [dm6]	C	T	4.610e^-4	0.86	INTRON Wnt6
3L	4941152	3L_4941152_SNP [dm3] 3L_4941152_SNP [dm6]	C	T	4.626e^-4	0.86	INTRON Con
3R	10036043	3R_10036043_SNP [dm3] 3R_14210321_SNP [dm6]	C	A	4.627e^-4	0.86	INTRON Dop1R1
2L	4230435	2L_4230435_SNP [dm3] 2L_4230435_SNP [dm6]	T	A	4.632e^-4	0.86	DOWNSTREAM CR44608 INTERGENIC
2R	17994767	2R_17994767_SNP [dm3] 2R_22107262_SNP [dm6]	G	A	4.639e^-4	0.86	DOWNSTREAM Vrp1 INTRON Vrp1
2L	14573372	2L_14573372_MNP [dm3] 2L_14573372_MNP [dm6]	TGT	ATG	4.643e^-4	0.86	INTERGENIC
2R	6740189	2R_6740189_SNP [dm3] 2R_10852684_SNP [dm6]	T	C	4.659e^-4	0.86	UPSTREAM CR45136 INTRON CG30015
X	18845713	X_18845713_SNP [dm3] X_18951680_SNP [dm6]	G	A	4.661e^-4	0.86	INTRON CG43759
X	12364866	X_12364866_SNP [dm3] X_12470833_SNP [dm6]	T	A	4.661e^-4	0.86	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11529225	3L_11529225_SNP [dm3] 3L_11536125_SNP [dm6]	A	C	4.662e^-4	0.86	INTRON Mob2	TF binding site mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

mn_SleepLength_Night phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results