DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.498e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2279 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9679611	2R_9679611_DEL [dm3] 2R_13792106_DEL [dm6]	CC	C	2.033e^-7	0.342	EXON CR43811
2R	14676098	2R_14676098_SNP [dm3] 2R_18788593_SNP [dm6]	C	T	3.650e^-7	0.342	INTRON CG15080
2R	12100255	2R_12100255_SNP [dm3] 2R_16212750_SNP [dm6]	T	C	1.544e^-6	0.652	INTRON mrj
2R	9676496	2R_9676496_SNP [dm3] 2R_13788991_SNP [dm6]	T	C	2.066e^-6	0.652	INTERGENIC
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	2.642e^-6	0.652	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	2.720e^-6	0.652	INTRON Spn
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	3.001e^-6	0.652	INTERGENIC	transposable element FlyBase
2L	8423456	2L_8423456_DEL [dm3] 2L_8423456_DEL [dm6]	TGCT	T	4.150e^-6	0.652	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	26490041	3R_26490041_SNP [dm3] 3R_30664319_SNP [dm6]	G	T	4.305e^-6	0.652	UPSTREAM CR45191 INTERGENIC
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	4.357e^-6	0.652	START_GAINED Sh UTR_5_PRIME Sh
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	5.112e^-6	0.652	UPSTREAM l_2_efl INTRON St3
2R	1354359	2R_1354359_SNP [dm3] 2R_5466854_SNP [dm6]	C	A	5.820e^-6	0.652	INTERGENIC	transposable element FlyBase
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	6.159e^-6	0.652	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
3R	22449876	3R_22449876_SNP [dm3] 3R_26624154_SNP [dm6]	G	T	6.281e^-6	0.652	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2R	9764517	2R_9764517_SNP [dm3] 2R_13877012_SNP [dm6]	C	T	6.339e^-6	0.652	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5204026	X_5204026_SNP [dm3] X_5309993_SNP [dm6]	A	T	6.352e^-6	0.652	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
2R	12076005	2R_12076005_SNP [dm3] 2R_16188500_SNP [dm6]	C	T	6.436e^-6	0.652	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20517634	3R_20517634_SNP [dm3] 3R_24691912_SNP [dm6]	C	T	6.551e^-6	0.652	SYNONYMOUS_CODING slo
2R	12073056	2R_12073056_SNP [dm3] 2R_16185551_SNP [dm6]	A	G	6.604e^-6	0.652	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16300782	3R_16300782_SNP [dm3] 3R_20475060_SNP [dm6]	T	C	7.561e^-6	0.704	INTRON Gfrl
3R	27267286	3R_27267286_SNP [dm3] 3R_31441564_SNP [dm6]	G	A	8.002e^-6	0.704	INTRON Gprk2
2R	9676653	2R_9676653_SNP [dm3] 2R_13789148_SNP [dm6]	G	A	8.257e^-6	0.704	INTERGENIC
2R	1354357	2R_1354357_SNP [dm3] 2R_5466852_SNP [dm6]	G	T	9.309e^-6	0.728	INTERGENIC	transposable element FlyBase
2L	10572922	2L_10572922_SNP [dm3] 2L_10572922_SNP [dm6]	T	C	9.944e^-6	0.728	INTRON Trim9
3L	10836895	3L_10836895_SNP [dm3] 3L_10843795_SNP [dm6]	A	G	1.021e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	9679289	2R_9679289_SNP [dm3] 2R_13791784_SNP [dm6]	T	G	1.030e^-5	0.728	UPSTREAM CR43811 INTERGENIC
X	16925265	X_16925265_SNP [dm3] X_17031232_SNP [dm6]	G	C	1.049e^-5	0.728	INTRON CG45002
2R	12075996	2R_12075996_SNP [dm3] 2R_16188491_SNP [dm6]	C	T	1.099e^-5	0.736	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15540432	2R_15540432_SNP [dm3] 2R_19652927_SNP [dm6]	C	T	1.210e^-5	0.756	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	1.290e^-5	0.756	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	1.362e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4132014	2L_4132014_SNP [dm3] 2L_4132014_SNP [dm6]	C	T	1.370e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5076530	X_5076530_SNP [dm3] X_5182497_SNP [dm6]	C	T	1.414e^-5	0.756	UPSTREAM CG5062 INTRON rg & 1 other
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	1.437e^-5	0.756	INTERGENIC	regulatory region REDfly_CRMs
2R	9677964	2R_9677964_SNP [dm3] 2R_13790459_SNP [dm6]	A	T	1.487e^-5	0.756	INTERGENIC
2R	8114508	2R_8114508_SNP [dm3] 2R_12227003_SNP [dm6]	C	T	1.544e^-5	0.756	UPSTREAM CG8854 INTRON CG8854
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	1.577e^-5	0.756	INTRON Ptp99A
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	1.625e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	1.734e^-5	0.756	UTR_3_PRIME Cpr50Ca
3L	7266474	3L_7266474_SNP [dm3] 3L_7273374_SNP [dm6]	G	A	1.738e^-5	0.756	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2R	9677957	2R_9677957_SNP [dm3] 2R_13790452_SNP [dm6]	A	T	1.860e^-5	0.756	INTERGENIC
3L	767649	3L_767649_SNP [dm3] 3L_767649_SNP [dm6]	T	C	1.975e^-5	0.756	INTERGENIC
2R	10011586	2R_10011586_SNP [dm3] 2R_14124081_SNP [dm6]	A	T	2.152e^-5	0.756	INTRON Prosap
2R	10011581	2R_10011581_SNP [dm3] 2R_14124076_SNP [dm6]	C	T	2.201e^-5	0.756	INTRON Prosap
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	2.206e^-5	0.756	DOWNSTREAM Cpr50Ca INTERGENIC
2R	9677994	2R_9677994_SNP [dm3] 2R_13790489_SNP [dm6]	T	A	2.262e^-5	0.756	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15939781	2R_15939781_SNP [dm3] 2R_20052276_SNP [dm6]	G	A	2.276e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	9677979	2R_9677979_SNP [dm3] 2R_13790474_SNP [dm6]	T	A	2.391e^-5	0.756	INTERGENIC
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	2.464e^-5	0.756	INTRON brp
3L	10836651	3L_10836651_SNP [dm3] 3L_10843551_SNP [dm6]	C	T	2.486e^-5	0.756	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12073844	2R_12073844_SNP [dm3] 2R_16186339_SNP [dm6]	A	T	2.522e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3346733	2R_3346733_DEL [dm3] 2R_7459228_DEL [dm6]	TA	T	2.574e^-5	0.756	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26490048	3R_26490048_SNP [dm3] 3R_30664326_SNP [dm6]	C	T	2.587e^-5	0.756	UPSTREAM CR45191 INTERGENIC
2L	4278870	2L_4278870_SNP [dm3] 2L_4278870_SNP [dm6]	A	T	2.671e^-5	0.756	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
2R	9679404	2R_9679404_SNP [dm3] 2R_13791899_SNP [dm6]	G	A	2.719e^-5	0.756	UPSTREAM CR43811 INTERGENIC
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	2.733e^-5	0.756	INTRON CG12484
2R	12072897	2R_12072897_SNP [dm3] 2R_16185392_SNP [dm6]	C	T	2.818e^-5	0.756	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12073843	2R_12073843_SNP [dm3] 2R_16186338_SNP [dm6]	G	T	2.844e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25264399	3R_25264399_SNP [dm3] 3R_29438677_SNP [dm6]	T	G	2.862e^-5	0.756	INTRON Ptp99A
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	2.879e^-5	0.756	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2L	7702077	2L_7702077_SNP [dm3] 2L_7702077_SNP [dm6]	A	G	2.928e^-5	0.756	UPSTREAM Tep2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5276771	2L_5276771_SNP [dm3] 2L_5276771_SNP [dm6]	G	A	2.948e^-5	0.756	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15140673	2L_15140673_SNP [dm3] 2L_15140673_SNP [dm6]	C	T	3.022e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25261849	3R_25261849_SNP [dm3] 3R_29436127_SNP [dm6]	T	C	3.033e^-5	0.756	INTRON Ptp99A
3R	25261801	3R_25261801_SNP [dm3] 3R_29436079_SNP [dm6]	T	A	3.197e^-5	0.756	INTRON Ptp99A
2L	5276745	2L_5276745_SNP [dm3] 2L_5276745_SNP [dm6]	A	T	3.200e^-5	0.756	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	3.228e^-5	0.756	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3R	26490897	3R_26490897_SNP [dm3] 3R_30665175_SNP [dm6]	C	A	3.359e^-5	0.756	INTRON CR45191
2L	5439206	2L_5439206_SNP [dm3] 2L_5439206_SNP [dm6]	A	G	3.369e^-5	0.756	INTRON CR31647
X	16925264	X_16925264_SNP [dm3] X_17031231_SNP [dm6]	G	A	3.388e^-5	0.756	INTRON CG45002
2R	9678044	2R_9678044_SNP [dm3] 2R_13790539_SNP [dm6]	T	A	3.437e^-5	0.756	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12111138	2R_12111138_SNP [dm3] 2R_16223633_SNP [dm6]	G	C	3.498e^-5	0.756	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA
2R	9799329	2R_9799329_INS [dm3] 2R_13911824_INS [dm6]	A	TGATGGTG	3.523e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799332	2R_9799332_SNP [dm3] 2R_13911827_SNP [dm6]	A	G	3.523e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799335	2R_9799335_SNP [dm3] 2R_13911830_SNP [dm6]	C	T	3.523e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	3.559e^-5	0.756	UPSTREAM l_2_efl INTRON St3
3R	8147882	3R_8147882_SNP [dm3] 3R_12322160_SNP [dm6]	C	T	3.574e^-5	0.756	DOWNSTREAM tRNA:CR31432 INTERGENIC
3L	7769451	3L_7769451_SNP [dm3] 3L_7776351_SNP [dm6]	A	T	3.586e^-5	0.756	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	13129051	3R_13129051_SNP [dm3] 3R_17303329_SNP [dm6]	C	G	3.597e^-5	0.756	INTERGENIC
2R	9675820	2R_9675820_SNP [dm3] 2R_13788315_SNP [dm6]	T	A	3.609e^-5	0.756	DOWNSTREAM Cpr50Ca INTERGENIC
3R	9702820	3R_9702820_SNP [dm3] 3R_13877098_SNP [dm6]	C	T	3.663e^-5	0.756	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5718115	2L_5718115_SNP [dm3] 2L_5718115_SNP [dm6]	A	C	3.668e^-5	0.756	DOWNSTREAM CG11149 & 1 other INTERGENIC
X	10751624	X_10751624_SNP [dm3] X_10857591_SNP [dm6]	G	A	3.670e^-5	0.756	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9799311	2R_9799311_SNP [dm3] 2R_13911806_SNP [dm6]	C	T	3.703e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	9006441	X_9006441_INS [dm3] X_9112408_INS [dm6]	C	CTT	3.794e^-5	0.756	INTRON AP-1gamma
2R	9677883	2R_9677883_SNP [dm3] 2R_13790378_SNP [dm6]	A	T	3.823e^-5	0.756	INTERGENIC
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	3.833e^-5	0.756	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	14676242	2R_14676242_SNP [dm3] 2R_18788737_SNP [dm6]	T	C	3.862e^-5	0.756	INTRON CG15080
2L	19884952	2L_19884952_SNP [dm3] 2L_19884952_SNP [dm6]	A	G	3.943e^-5	0.756	INTRON sick
2L	9079049	2L_9079049_SNP [dm3] 2L_9079049_SNP [dm6]	G	C	3.945e^-5	0.756	INTERGENIC
2L	4132068	2L_4132068_SNP [dm3] 2L_4132068_SNP [dm6]	T	G	3.981e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12073845	2R_12073845_DEL [dm3] 2R_16186340_DEL [dm6]	CGC	C	4.074e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2452853	2R_2452853_SNP [dm3] 2R_6565348_SNP [dm6]	A	G	4.117e^-5	0.756	INTRON jing
2R	9677887	2R_9677887_DEL [dm3] 2R_13790382_DEL [dm6]	TCCTTAGTATGAAGTACCTC...	T	4.128e^-5	0.756	INTERGENIC
3R	19207896	3R_19207896_SNP [dm3] 3R_23382174_SNP [dm6]	T	A	4.188e^-5	0.756	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9678025	2R_9678025_SNP [dm3] 2R_13790520_SNP [dm6]	T	A	4.240e^-5	0.756	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9677881	2R_9677881_SNP [dm3] 2R_13790376_SNP [dm6]	G	A	4.268e^-5	0.756	INTERGENIC
2L	17292496	2L_17292496_DEL [dm3] 2L_17292496_DEL [dm6]	AA	A	4.274e^-5	0.756	UPSTREAM CG6380 INTERGENIC
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	4.390e^-5	0.756	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
3R	17293564	3R_17293564_SNP [dm3] 3R_21467842_SNP [dm6]	C	A	4.440e^-5	0.756	INTERGENIC
3R	17293574	3R_17293574_SNP [dm3] 3R_21467852_SNP [dm6]	A	G	4.440e^-5	0.756	INTERGENIC
3R	17293596	3R_17293596_SNP [dm3] 3R_21467874_SNP [dm6]	T	A	4.440e^-5	0.756	INTERGENIC
2L	5276762	2L_5276762_SNP [dm3] 2L_5276762_SNP [dm6]	G	A	4.462e^-5	0.756	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9920615	2R_9920615_SNP [dm3] 2R_14033110_SNP [dm6]	C	T	4.491e^-5	0.756	INTRON mam
3R	17293551	3R_17293551_SNP [dm3] 3R_21467829_SNP [dm6]	T	G	4.549e^-5	0.756	INTERGENIC
3R	26088906	3R_26088906_SNP [dm3] 3R_30263184_SNP [dm6]	C	T	4.614e^-5	0.756	INTERGENIC
2L	9362484	2L_9362484_SNP [dm3] 2L_9362484_SNP [dm6]	G	T	4.636e^-5	0.756	INTERGENIC
3R	25483333	3R_25483333_SNP [dm3] 3R_29657611_SNP [dm6]	G	C	4.680e^-5	0.756	INTRON Dop1R2
2R	9675960	2R_9675960_SNP [dm3] 2R_13788455_SNP [dm6]	G	A	4.719e^-5	0.756	DOWNSTREAM Cpr50Ca INTERGENIC
2L	17292501	2L_17292501_SNP [dm3] 2L_17292501_SNP [dm6]	G	A	4.760e^-5	0.756	UPSTREAM CG6380 INTERGENIC
3R	20807111	3R_20807111_SNP [dm3] 3R_24981389_SNP [dm6]	A	G	4.817e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	14818959	3R_14818959_SNP [dm3] 3R_18993237_SNP [dm6]	G	A	4.819e^-5	0.756	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	16947256	X_16947256_SNP [dm3] X_17053223_SNP [dm6]	C	A	4.848e^-5	0.756	INTRON CG45002
2R	18618277	2R_18618277_SNP [dm3] 2R_22730772_SNP [dm6]	G	A	4.905e^-5	0.756	INTRON jbug
2R	13384648	2R_13384648_SNP [dm3] 2R_17497143_SNP [dm6]	G	A	4.921e^-5	0.756	INTERGENIC
X	5872642	X_5872642_SNP [dm3] X_5978609_SNP [dm6]	G	A	4.925e^-5	0.756	INTRON Grip
2L	10430998	2L_10430998_SNP [dm3] 2L_10430998_SNP [dm6]	T	A	4.946e^-5	0.756	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26490513	3R_26490513_SNP [dm3] 3R_30664791_SNP [dm6]	C	A	4.971e^-5	0.756	EXON CR45191
X	3979536	X_3979536_SNP [dm3] X_4085503_SNP [dm6]	A	C	5.020e^-5	0.756	INTRON CG43689
2R	9795739	2R_9795739_SNP [dm3] 2R_13908234_SNP [dm6]	G	A	5.048e^-5	0.756	START_GAINED shot UTR_5_PRIME shot INTRON shot	TF binding site mE1_TFBS_cad
2L	14071225	2L_14071225_SNP [dm3] 2L_14071225_SNP [dm6]	A	G	5.071e^-5	0.756	INTRON nAChRalpha5
2R	9679585	2R_9679585_SNP [dm3] 2R_13792080_SNP [dm6]	G	T	5.092e^-5	0.756	EXON CR43811
3R	17293603	3R_17293603_SNP [dm3] 3R_21467881_SNP [dm6]	C	T	5.102e^-5	0.756	INTERGENIC
3L	18726410	3L_18726410_SNP [dm3] 3L_18733310_SNP [dm6]	G	A	5.104e^-5	0.756	INTERGENIC
3R	25485391	3R_25485391_SNP [dm3] 3R_29659669_SNP [dm6]	G	A	5.124e^-5	0.756	INTRON Dop1R2
2R	1820135	2R_1820135_SNP [dm3] 2R_5932630_SNP [dm6]	G	A	5.149e^-5	0.756	INTERGENIC
2R	15067740	2R_15067740_SNP [dm3] 2R_19180235_SNP [dm6]	T	C	5.208e^-5	0.756	INTRON hppy
X	16947237	X_16947237_SNP [dm3] X_17053204_SNP [dm6]	C	G	5.225e^-5	0.756	INTRON CG45002
X	16925193	X_16925193_SNP [dm3] X_17031160_SNP [dm6]	A	T	5.235e^-5	0.756	INTRON CG45002
2R	10033162	2R_10033162_SNP [dm3] 2R_14145657_SNP [dm6]	T	A	5.276e^-5	0.756	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	12145080	2R_12145080_DEL [dm3] 2R_16257575_DEL [dm6]	CTCTTCCCG	C	5.279e^-5	0.756	INTRON CngA
2L	4799922	2L_4799922_SNP [dm3] 2L_4799922_SNP [dm6]	G	A	5.368e^-5	0.761	INTRON Clect27	TF binding site mE1_TFBS_cad
2L	9078985	2L_9078985_SNP [dm3] 2L_9078985_SNP [dm6]	A	G	5.427e^-5	0.761	DOWNSTREAM CG12439 INTERGENIC
2R	7220740	2R_7220740_SNP [dm3] 2R_11333235_SNP [dm6]	C	T	5.437e^-5	0.761	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13197656	3R_13197656_SNP [dm3] 3R_17371934_SNP [dm6]	C	G	5.543e^-5	0.77	UPSTREAM CR44256 INTERGENIC
3R	26490529	3R_26490529_SNP [dm3] 3R_30664807_SNP [dm6]	C	A	5.683e^-5	0.777	EXON CR45191
3R	9702120	3R_9702120_SNP [dm3] 3R_13876398_SNP [dm6]	G	A	5.691e^-5	0.777	INTRON E5	TF binding site BDTNP1_TFBS_dl
3L	2545690	3L_2545690_SNP [dm3] 3L_2545690_SNP [dm6]	G	A	5.753e^-5	0.777	INTRON Spn
X	20605678	X_20605678_SNP [dm3] X_20734651_SNP [dm6]	A	G	5.909e^-5	0.777	UTR_3_PRIME CG1324 DOWNSTREAM CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	16443782	2R_16443782_SNP [dm3] 2R_20556277_SNP [dm6]	C	T	5.930e^-5	0.777	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18240429	2R_18240429_SNP [dm3] 2R_22352924_SNP [dm6]	C	T	5.968e^-5	0.777	INTRON Liprin-gamma
2L	18814298	2L_18814298_SNP [dm3] 2L_18814298_SNP [dm6]	T	C	5.997e^-5	0.777	DOWNSTREAM CG17325 & 1 other INTERGENIC
X	11873324	X_11873324_SNP [dm3] X_11979291_SNP [dm6]	C	T	6.107e^-5	0.777	INTRON cac
2L	4157901	2L_4157901_SNP [dm3] 2L_4157901_SNP [dm6]	C	T	6.208e^-5	0.777	INTERGENIC
X	16997266	X_16997266_SNP [dm3] X_17103233_SNP [dm6]	G	C	6.244e^-5	0.777	SYNONYMOUS_CODING CG4991
2R	12075919	2R_12075919_SNP [dm3] 2R_16188414_SNP [dm6]	A	G	6.377e^-5	0.777	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16611761	X_16611761_SNP [dm3] X_16717728_SNP [dm6]	C	T	6.391e^-5	0.777	INTRON CG34325
3L	6388981	3L_6388981_SNP [dm3] 3L_6395881_SNP [dm6]	C	T	6.434e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16947190	X_16947190_SNP [dm3] X_17053157_SNP [dm6]	G	T	6.473e^-5	0.777	INTRON CG45002
X	7908727	X_7908727_SNP [dm3] X_8014694_SNP [dm6]	A	C	6.516e^-5	0.777	INTRON Tbh
2L	5783401	2L_5783401_SNP [dm3] 2L_5783401_SNP [dm6]	T	G	6.573e^-5	0.777	UPSTREAM CG31913 INTRON CG9171
2L	945241	2L_945241_SNP [dm3] 2L_945241_SNP [dm6]	T	C	6.591e^-5	0.777	INTRON CG4341
2L	4897394	2L_4897394_SNP [dm3] 2L_4897394_SNP [dm6]	T	C	6.649e^-5	0.777	INTRON CG3036	TF binding site mE1_TFBS_sens
2L	18814299	2L_18814299_SNP [dm3] 2L_18814299_SNP [dm6]	A	G	6.674e^-5	0.777	DOWNSTREAM CG17325 & 1 other INTERGENIC
2L	9399199	2L_9399199_SNP [dm3] 2L_9399199_SNP [dm6]	T	G	6.678e^-5	0.777	INTRON Shawl
X	16947242	X_16947242_SNP [dm3] X_17053209_SNP [dm6]	A	G	6.740e^-5	0.777	INTRON CG45002
2R	7596387	2R_7596387_SNP [dm3] 2R_11708882_SNP [dm6]	C	A	6.756e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4881532	2L_4881532_SNP [dm3] 2L_4881532_SNP [dm6]	C	T	6.793e^-5	0.777	SYNONYMOUS_CODING Cf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15295921	X_15295921_DEL [dm3] X_15401888_DEL [dm6]	AA	A	6.860e^-5	0.777	INTRON Cngl
2R	10033109	2R_10033109_SNP [dm3] 2R_14145604_SNP [dm6]	C	T	6.864e^-5	0.777	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	14269828	3L_14269828_SNP [dm3] 3L_14276728_SNP [dm6]	T	C	6.880e^-5	0.777	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	16946978	X_16946978_SNP [dm3] X_17052945_SNP [dm6]	G	A	6.912e^-5	0.777	INTRON CG45002
X	11873309	X_11873309_SNP [dm3] X_11979276_SNP [dm6]	T	G	7.016e^-5	0.777	INTRON cac
2L	5276765	2L_5276765_SNP [dm3] 2L_5276765_SNP [dm6]	G	A	7.038e^-5	0.777	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4975188	X_4975188_SNP [dm3] X_5081155_SNP [dm6]	G	T	7.140e^-5	0.777	INTRON CG32767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	4051252	2L_4051252_SNP [dm3] 2L_4051252_SNP [dm6]	T	A	7.155e^-5	0.777	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	7.196e^-5	0.777	INTERGENIC
X	16925175	X_16925175_SNP [dm3] X_17031142_SNP [dm6]	A	G	7.208e^-5	0.777	INTRON CG45002
2R	16317394	2R_16317394_SNP [dm3] 2R_20429889_SNP [dm6]	A	G	7.210e^-5	0.777	INTRON CG12484
3R	10313733	3R_10313733_SNP [dm3] 3R_14488011_SNP [dm6]	G	T	7.216e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9286685	2L_9286685_SNP [dm3] 2L_9286685_SNP [dm6]	T	C	7.231e^-5	0.777	INTRON Ggamma30A
2R	18227883	2R_18227883_SNP [dm3] 2R_22340378_SNP [dm6]	G	T	7.322e^-5	0.777	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
2R	10074004	2R_10074004_SNP [dm3] 2R_14186499_SNP [dm6]	G	C	7.327e^-5	0.777	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12502809	2L_12502809_SNP [dm3] 2L_12502809_SNP [dm6]	T	G	7.328e^-5	0.777	INTRON bun
3R	9702871	3R_9702871_SNP [dm3] 3R_13877149_SNP [dm6]	T	C	7.425e^-5	0.777	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	264221	3R_264221_SNP [dm3] 3R_4438499_SNP [dm6]	C	A	7.447e^-5	0.777	NON_SYNONYMOUS_CODING CG14650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	7.505e^-5	0.777	INTERGENIC
2R	18618302	2R_18618302_SNP [dm3] 2R_22730797_SNP [dm6]	G	T	7.511e^-5	0.777	INTRON jbug
2L	10431178	2L_10431178_SNP [dm3] 2L_10431178_SNP [dm6]	A	T	7.514e^-5	0.777	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	180809	3R_180809_SNP [dm3] 3R_4355087_SNP [dm6]	T	A	7.517e^-5	0.777	INTERGENIC
2R	13145394	2R_13145394_SNP [dm3] 2R_17257889_SNP [dm6]	G	A	7.544e^-5	0.777	UPSTREAM CG43108 INTRON mbl
X	16997254	X_16997254_SNP [dm3] X_17103221_SNP [dm6]	C	T	7.572e^-5	0.777	SYNONYMOUS_CODING CG4991
2L	4162420	2L_4162420_SNP [dm3] 2L_4162420_SNP [dm6]	C	T	7.620e^-5	0.777	INTERGENIC
2L	4162422	2L_4162422_INS [dm3] 2L_4162422_INS [dm6]	C	CAT	7.620e^-5	0.777	INTERGENIC
2R	9668131	2R_9668131_SNP [dm3] 2R_13780626_SNP [dm6]	G	T	7.837e^-5	0.785	UPSTREAM S-Lap7 INTRON Cpr50Ca
3R	11920319	3R_11920319_INS [dm3] 3R_16094597_INS [dm6]	T	TG	7.845e^-5	0.785	UPSTREAM Mhcl INTRON Mhcl
3L	9666909	3L_9666909_SNP [dm3] 3L_9673809_SNP [dm6]	T	A	7.851e^-5	0.785	INTRON fry
2R	3165301	2R_3165301_SNP [dm3] 2R_7277796_SNP [dm6]	G	A	7.951e^-5	0.785	SYNONYMOUS_CODING Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10751439	X_10751439_SNP [dm3] X_10857406_SNP [dm6]	C	G	7.955e^-5	0.785	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19404136	2R_19404136_DEL [dm3] 2R_23516613_DEL [dm6]	TTG	GA	7.975e^-5	0.785	INTERGENIC
3L	2649493	3L_2649493_SNP [dm3] 3L_2649493_SNP [dm6]	C	T	8.057e^-5	0.785	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
X	15204317	X_15204317_SNP [dm3] X_15310284_SNP [dm6]	T	C	8.127e^-5	0.785	INTRON gce
2R	12076022	2R_12076022_SNP [dm3] 2R_16188517_SNP [dm6]	G	T	8.134e^-5	0.785	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9362482	2L_9362482_INS [dm3] 2L_9362482_INS [dm6]	A	ACAC	8.219e^-5	0.785	INTERGENIC
2R	14994295	2R_14994295_SNP [dm3] 2R_19106790_SNP [dm6]	G	A	8.283e^-5	0.785	INTRON 5-HT1A
2R	7596388	2R_7596388_SNP [dm3] 2R_11708883_SNP [dm6]	T	C	8.325e^-5	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	13058490	2L_13058490_SNP [dm3] 2L_13058490_SNP [dm6]	C	G	8.379e^-5	0.785	INTRON CG9932
2R	10013160	2R_10013160_SNP [dm3] 2R_14125655_SNP [dm6]	T	C	8.398e^-5	0.785	INTRON Prosap
2L	10431186	2L_10431186_SNP [dm3] 2L_10431186_SNP [dm6]	A	G	8.425e^-5	0.785	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2101021	3R_2101021_SNP [dm3] 3R_6275299_SNP [dm6]	T	C	8.450e^-5	0.785	INTERGENIC
2R	10025658	2R_10025658_SNP [dm3] 2R_14138153_SNP [dm6]	G	C	8.638e^-5	0.785	INTRON Prosap
3R	17982277	3R_17982277_SNP [dm3] 3R_22156555_SNP [dm6]	A	T	8.874e^-5	0.785	INTRON SKIP
3L	8540463	3L_8540463_SNP [dm3] 3L_8547363_SNP [dm6]	C	G	8.934e^-5	0.785	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11873477	X_11873477_SNP [dm3] X_11979444_SNP [dm6]	A	G	8.951e^-5	0.785	INTRON cac
2R	12145282	2R_12145282_SNP [dm3] 2R_16257777_SNP [dm6]	C	A	9.051e^-5	0.785	INTRON CngA
2R	12089161	2R_12089161_SNP [dm3] 2R_16201656_SNP [dm6]	C	T	9.099e^-5	0.785	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2R	10829799	2R_10829799_SNP [dm3] 2R_14942294_SNP [dm6]	A	T	9.154e^-5	0.785	UPSTREAM CG10257 INTERGENIC
2R	17929804	2R_17929804_SNP [dm3] 2R_22042299_SNP [dm6]	A	G	9.171e^-5	0.785	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
3R	9702489	3R_9702489_SNP [dm3] 3R_13876767_SNP [dm6]	C	G	9.199e^-5	0.785	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8114799	2R_8114799_SNP [dm3] 2R_12227294_SNP [dm6]	G	A	9.202e^-5	0.785	UPSTREAM CG8854 INTRON CG8854
3L	9666801	3L_9666801_SNP [dm3] 3L_9673701_SNP [dm6]	A	G	9.312e^-5	0.785	INTRON fry
X	8895713	X_8895713_SNP [dm3] X_9001680_SNP [dm6]	G	A	9.334e^-5	0.785	SYNONYMOUS_CODING rdgA INTRON rdgA & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	14795609	2R_14795609_SNP [dm3] 2R_18908104_SNP [dm6]	C	A	9.430e^-5	0.785	DOWNSTREAM Vha100-3 INTRON sano
2R	7220722	2R_7220722_SNP [dm3] 2R_11333217_SNP [dm6]	G	A	9.464e^-5	0.785	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5536847	2L_5536847_SNP [dm3] 2L_5536847_SNP [dm6]	A	G	9.484e^-5	0.785	UPSTREAM tomb DOWNSTREAM CG14015 & 1 other INTERGENIC
3L	10699635	3L_10699635_SNP [dm3] 3L_10706535_SNP [dm6]	A	C	9.501e^-5	0.785	INTERGENIC
2R	12145295	2R_12145295_DEL [dm3] 2R_16257790_DEL [dm6]	ATTGA	A	9.518e^-5	0.785	INTRON CngA
3L	2254242	3L_2254242_SNP [dm3] 3L_2254242_SNP [dm6]	G	C	9.549e^-5	0.785	INTRON CG1275	TF binding site mE1_TFBS_cad
2L	5718112	2L_5718112_SNP [dm3] 2L_5718112_SNP [dm6]	T	A	9.582e^-5	0.785	DOWNSTREAM CG11149 & 1 other INTERGENIC
2R	18618292	2R_18618292_SNP [dm3] 2R_22730787_SNP [dm6]	T	G	9.689e^-5	0.785	INTRON jbug
3R	15203838	3R_15203838_INS [dm3] 3R_19378116_INS [dm6]	T	TCTTT	9.693e^-5	0.785	UPSTREAM CG31245 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	13283483	3R_13283483_SNP [dm3] 3R_17457761_SNP [dm6]	C	T	9.724e^-5	0.785	UPSTREAM CG14330 INTERGENIC
2R	15067861	2R_15067861_SNP [dm3] 2R_19180356_SNP [dm6]	A	C	9.726e^-5	0.785	INTRON hppy
2L	5276754	2L_5276754_DEL [dm3] 2L_5276754_DEL [dm6]	ATGCT	A	9.864e^-5	0.785	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10368541	3R_10368541_SNP [dm3] 3R_14542819_SNP [dm6]	G	C	9.939e^-5	0.785	INTRON Pde6
3L	10836872	3L_10836872_SNP [dm3] 3L_10843772_SNP [dm6]	G	T	9.953e^-5	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	10767055	3L_10767055_SNP [dm3] 3L_10773955_SNP [dm6]	A	G	1.006e^-4	0.785	DOWNSTREAM CG43245 INTERGENIC
X	8403059	X_8403059_SNP [dm3] X_8509026_SNP [dm6]	A	C	1.007e^-4	0.785	UPSTREAM CG33181 INTRON CG33181
3R	10230428	3R_10230428_SNP [dm3] 3R_14404706_SNP [dm6]	G	C	1.015e^-4	0.785	INTRON cv-c
3L	9666778	3L_9666778_SNP [dm3] 3L_9673678_SNP [dm6]	A	G	1.022e^-4	0.785	INTRON fry
X	10751574	X_10751574_SNP [dm3] X_10857541_SNP [dm6]	T	C	1.029e^-4	0.785	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	10414084	2L_10414084_SNP [dm3] 2L_10414084_SNP [dm6]	C	A	1.029e^-4	0.785	UTR_5_PRIME Klp31E UPSTREAM CG5355 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6577883	3L_6577883_SNP [dm3] 3L_6584783_SNP [dm6]	G	A	1.029e^-4	0.785	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
3L	12374674	3L_12374674_DEL [dm3] 3L_12381574_DEL [dm6]	GAAATTCTTTAACAAGGCGA...	G	1.035e^-4	0.785	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	13145142	2R_13145142_SNP [dm3] 2R_17257637_SNP [dm6]	T	C	1.036e^-4	0.785	NON_SYNONYMOUS_CODING CG43108 INTRON mbl
3R	17956194	3R_17956194_SNP [dm3] 3R_22130472_SNP [dm6]	T	G	1.036e^-4	0.785	INTRON CG42390
3L	12494061	3L_12494061_SNP [dm3] 3L_12500961_SNP [dm6]	T	C	1.038e^-4	0.785	NON_SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
3L	9666872	3L_9666872_SNP [dm3] 3L_9673772_SNP [dm6]	T	A	1.038e^-4	0.785	INTRON fry
2L	13258450	2L_13258450_SNP [dm3] 2L_13258450_SNP [dm6]	G	A	1.051e^-4	0.785	UTR_3_PRIME CG31851 DOWNSTREAM CG31730 & 1 other
X	16947214	X_16947214_SNP [dm3] X_17053181_SNP [dm6]	G	A	1.058e^-4	0.785	INTRON CG45002
2R	9675734	2R_9675734_SNP [dm3] 2R_13788229_SNP [dm6]	T	C	1.061e^-4	0.785	DOWNSTREAM Cpr50Ca INTERGENIC
3R	25485365	3R_25485365_SNP [dm3] 3R_29659643_SNP [dm6]	A	G	1.062e^-4	0.785	INTRON Dop1R2
2R	1534413	2R_1534413_SNP [dm3] 2R_5646908_SNP [dm6]	T	C	1.063e^-4	0.785	INTRON CG11665
3L	12981081	3L_12981081_SNP [dm3] 3L_12987981_SNP [dm6]	T	A	1.064e^-4	0.785	INTERGENIC
2R	3165442	2R_3165442_SNP [dm3] 2R_7277937_SNP [dm6]	T	C	1.068e^-4	0.785	UTR_5_PRIME Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	1.072e^-4	0.785	INTERGENIC
3L	12564316	3L_12564316_SNP [dm3] 3L_12571216_SNP [dm6]	G	A	1.086e^-4	0.785	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10313668	3R_10313668_SNP [dm3] 3R_14487946_SNP [dm6]	T	C	1.090e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24572842	3R_24572842_SNP [dm3] 3R_28747120_SNP [dm6]	C	G	1.095e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	4283252	2R_4283252_SNP [dm3] 2R_8395747_SNP [dm6]	G	T	1.095e^-4	0.785	UTR_3_PRIME pdm3 DOWNSTREAM CG2121
2R	15939774	2R_15939774_SNP [dm3] 2R_20052269_SNP [dm6]	C	T	1.108e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	1362632	2R_1362632_SNP [dm3] 2R_5475127_SNP [dm6]	G	T	1.113e^-4	0.785	INTRON CG30440
3L	6388926	3L_6388926_SNP [dm3] 3L_6395826_SNP [dm6]	G	A	1.118e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13144763	2R_13144763_SNP [dm3] 2R_17257258_SNP [dm6]	A	C	1.119e^-4	0.785	UTR_3_PRIME CG43108 INTRON mbl
2R	14925188	2R_14925188_SNP [dm3] 2R_19037683_SNP [dm6]	A	G	1.128e^-4	0.785	INTERGENIC
2R	19346654	2R_19346654_SNP [dm3] 2R_23459131_SNP [dm6]	C	G	1.130e^-4	0.785	UPSTREAM skpF INTRON CG43795
3R	11651483	3R_11651483_SNP [dm3] 3R_15825761_SNP [dm6]	C	T	1.136e^-4	0.785	START_GAINED CG4576 UTR_5_PRIME CG4576 INTRON rec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9674954	2R_9674954_SNP [dm3] 2R_13787449_SNP [dm6]	A	T	1.138e^-4	0.785	UTR_3_PRIME Cpr50Ca
2L	1411727	2L_1411727_SNP [dm3] 2L_1411727_SNP [dm6]	G	A	1.139e^-4	0.785	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	12073891	2R_12073891_SNP [dm3] 2R_16186386_SNP [dm6]	T	A	1.140e^-4	0.785	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18034778	3L_18034778_SNP [dm3] 3L_18041678_SNP [dm6]	A	G	1.152e^-4	0.785	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
3L	14134628	3L_14134628_SNP [dm3] 3L_14141528_SNP [dm6]	C	T	1.157e^-4	0.785	INTERGENIC	regulatory region REDfly_CRMs
X	16947103	X_16947103_DEL [dm3] X_17053070_DEL [dm6]	TTAGTTTTAAATCA...	T	1.160e^-4	0.785	INTRON CG45002
2L	20753866	2L_20753866_SNP [dm3] 2L_20753866_SNP [dm6]	G	A	1.165e^-4	0.785	SYNONYMOUS_CODING Ns4 DOWNSTREAM CG9323	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3007072	3R_3007072_SNP [dm3] 3R_7181350_SNP [dm6]	T	C	1.175e^-4	0.785	INTRON sas	TF binding site mE1_TFBS_cad
3R	8521991	3R_8521991_SNP [dm3] 3R_12696269_SNP [dm6]	G	A	1.177e^-4	0.785	SYNONYMOUS_CODING NijC
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	1.194e^-4	0.785	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2R	14443323	2R_14443323_SNP [dm3] 2R_18555818_SNP [dm6]	C	T	1.195e^-4	0.785	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso
3R	26138387	3R_26138387_SNP [dm3] 3R_30312665_SNP [dm6]	G	A	1.205e^-4	0.785	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	12732724	3R_12732724_SNP [dm3] 3R_16907002_SNP [dm6]	C	T	1.215e^-4	0.785	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12229044	2L_12229044_SNP [dm3] 2L_12229044_SNP [dm6]	A	G	1.220e^-4	0.785	INTRON aret
3L	18092056	3L_18092056_INS [dm3] 3L_18098956_INS [dm6]	G	CATT	1.223e^-4	0.785	INTRON CG13698
3L	13222267	3L_13222267_SNP [dm3] 3L_13229167_SNP [dm6]	A	G	1.227e^-4	0.785	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	17649028	2R_17649028_SNP [dm3] 2R_21761523_SNP [dm6]	A	C	1.229e^-4	0.785	INTERGENIC
2L	5276768	2L_5276768_SNP [dm3] 2L_5276768_SNP [dm6]	C	A	1.230e^-4	0.785	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14925232	2R_14925232_SNP [dm3] 2R_19037727_SNP [dm6]	T	A	1.233e^-4	0.785	INTERGENIC
X	17269577	X_17269577_SNP [dm3] X_17375544_SNP [dm6]	A	T	1.237e^-4	0.785	INTERGENIC
3L	7154304	3L_7154304_SNP [dm3] 3L_7161204_SNP [dm6]	T	A	1.241e^-4	0.785	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6121036	X_6121036_SNP [dm3] X_6227003_SNP [dm6]	C	T	1.252e^-4	0.785	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20824984	X_20824984_SNP [dm3] X_20953957_SNP [dm6]	T	C	1.252e^-4	0.785	INTERGENIC
2L	9073099	2L_9073099_SNP [dm3] 2L_9073099_SNP [dm6]	A	G	1.253e^-4	0.785	INTERGENIC
2R	15540421	2R_15540421_SNP [dm3] 2R_19652916_SNP [dm6]	T	A	1.259e^-4	0.785	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	12109637	2R_12109637_SNP [dm3] 2R_16222132_SNP [dm6]	T	A	1.261e^-4	0.785	UTR_3_PRIME CG7798 UPSTREAM mrj INTRON CR43898	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12145078	2R_12145078_INS [dm3] 2R_16257573_INS [dm6]	A	AAACCCCCAAC...	1.264e^-4	0.785	INTRON CngA
3R	17085652	3R_17085652_SNP [dm3] 3R_21259930_SNP [dm6]	T	G	1.268e^-4	0.785	INTRON ETHR	TF binding site mE1_TFBS_cad
3L	5513044	3L_5513044_SNP [dm3] 3L_5519944_SNP [dm6]	C	T	1.270e^-4	0.785	INTRON Lkr
3L	12564309	3L_12564309_SNP [dm3] 3L_12571209_SNP [dm6]	C	A	1.273e^-4	0.785	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	1221985	X_1221985_SNP [dm3] X_1327952_SNP [dm6]	G	A	1.273e^-4	0.785	SYNONYMOUS_CODING fs_1_N
3L	2280705	3L_2280705_SNP [dm3] 3L_2280705_SNP [dm6]	T	C	1.277e^-4	0.785	INTERGENIC
2R	20191583	2R_20191583_SNP [dm3] 2R_24304060_SNP [dm6]	C	G	1.279e^-4	0.785	INTERGENIC	regulatory region REDfly_CRMs
X	20824995	X_20824995_INS [dm3] X_20953968_INS [dm6]	A	AAAAAA	1.281e^-4	0.785	INTERGENIC
X	5331139	X_5331139_SNP [dm3] X_5437106_SNP [dm6]	G	A	1.287e^-4	0.785	INTERGENIC
3R	8488105	3R_8488105_SNP [dm3] 3R_12662383_SNP [dm6]	T	A	1.289e^-4	0.785	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9675690	2R_9675690_DEL [dm3] 2R_13788185_DEL [dm6]	TAT	T	1.292e^-4	0.785	DOWNSTREAM Cpr50Ca INTERGENIC
2L	8246030	2L_8246030_SNP [dm3] 2L_8246030_SNP [dm6]	G	A	1.295e^-4	0.785	SYNONYMOUS_CODING CG8086 INTRON CG8086
3R	7877976	3R_7877976_SNP [dm3] 3R_12052254_SNP [dm6]	A	C	1.296e^-4	0.785	INTERGENIC
3L	7154297	3L_7154297_SNP [dm3] 3L_7161197_SNP [dm6]	T	G	1.297e^-4	0.785	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25485406	3R_25485406_SNP [dm3] 3R_29659684_SNP [dm6]	C	T	1.300e^-4	0.785	INTRON Dop1R2
2R	14678042	2R_14678042_SNP [dm3] 2R_18790537_SNP [dm6]	A	C	1.303e^-4	0.785	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2L	4896606	2L_4896606_SNP [dm3] 2L_4896606_SNP [dm6]	A	T	1.304e^-4	0.785	INTRON CG3036
2L	17778667	2L_17778667_SNP [dm3] 2L_17778667_SNP [dm6]	G	T	1.310e^-4	0.785	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18092051	3L_18092051_SNP [dm3] 3L_18098951_SNP [dm6]	C	G	1.311e^-4	0.785	INTRON CG13698
2L	4897079	2L_4897079_SNP [dm3] 2L_4897079_SNP [dm6]	A	G	1.314e^-4	0.785	INTRON CG3036
3R	14523040	3R_14523040_INS [dm3] 3R_18697318_INS [dm6]	A	AA	1.317e^-4	0.785	INTERGENIC
X	1213768	X_1213768_SNP [dm3] X_1319735_SNP [dm6]	A	G	1.320e^-4	0.785	INTRON DAAM
2R	14792009	2R_14792009_SNP [dm3] 2R_18904504_SNP [dm6]	T	G	1.336e^-4	0.785	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4157076	2L_4157076_SNP [dm3] 2L_4157076_SNP [dm6]	G	A	1.339e^-4	0.785	INTERGENIC
2L	5265091	2L_5265091_SNP [dm3] 2L_5265091_SNP [dm6]	T	C	1.344e^-4	0.785	SYNONYMOUS_CODING Cyp4ac1 INTRON tkv
3L	7443740	3L_7443740_SNP [dm3] 3L_7450640_SNP [dm6]	A	G	1.350e^-4	0.785	UPSTREAM CG33278 INTRON CG42458	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8100507	X_8100507_SNP [dm3] X_8206474_SNP [dm6]	C	A	1.355e^-4	0.785	INTRON sdt
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	1.360e^-4	0.785	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	14024155	3R_14024155_SNP [dm3] 3R_18198433_SNP [dm6]	T	C	1.361e^-4	0.785	INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26760791	3R_26760791_SNP [dm3] 3R_30935069_SNP [dm6]	T	C	1.363e^-4	0.785	DOWNSTREAM CG15549 INTERGENIC
3L	1081436	3L_1081436_SNP [dm3] 3L_1081436_SNP [dm6]	A	G	1.365e^-4	0.785	INTRON bab1
3R	12514684	3R_12514684_SNP [dm3] 3R_16688962_SNP [dm6]	C	T	1.368e^-4	0.785	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	17956192	3R_17956192_SNP [dm3] 3R_22130470_SNP [dm6]	C	A	1.368e^-4	0.785	INTRON CG42390
X	20681732	X_20681732_INS [dm3] X_20810705_INS [dm6]	A	AA	1.368e^-4	0.785	INTRON shakB
2R	12145306	2R_12145306_SNP [dm3] 2R_16257801_SNP [dm6]	A	G	1.371e^-4	0.785	INTRON CngA
2L	15140640	2L_15140640_SNP [dm3] 2L_15140640_SNP [dm6]	A	T	1.372e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	1.373e^-4	0.785	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15821000	3R_15821000_SNP [dm3] 3R_19995278_SNP [dm6]	C	A	1.377e^-4	0.785	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10751490	X_10751490_SNP [dm3] X_10857457_SNP [dm6]	A	G	1.378e^-4	0.785	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3346539	2R_3346539_SNP [dm3] 2R_7459034_SNP [dm6]	T	C	1.383e^-4	0.785	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17956177	3R_17956177_SNP [dm3] 3R_22130455_SNP [dm6]	T	C	1.386e^-4	0.785	SPLICE_SITE_REGION CG42390 INTRON CG42390
X	16946904	X_16946904_SNP [dm3] X_17052871_SNP [dm6]	G	T	1.391e^-4	0.785	INTRON CG45002
3R	16872165	3R_16872165_SNP [dm3] 3R_21046443_SNP [dm6]	A	G	1.395e^-4	0.785	SYNONYMOUS_CODING CG31207 UPSTREAM CG31189	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10061086	2L_10061086_SNP [dm3] 2L_10061086_SNP [dm6]	A	G	1.395e^-4	0.785	DOWNSTREAM Pen INTRON Spn31A
2L	10572928	2L_10572928_SNP [dm3] 2L_10572928_SNP [dm6]	G	A	1.398e^-4	0.785	INTRON Trim9
2R	10829821	2R_10829821_SNP [dm3] 2R_14942316_SNP [dm6]	T	G	1.402e^-4	0.785	UPSTREAM CG10257 INTERGENIC
2R	10026913	2R_10026913_SNP [dm3] 2R_14139408_SNP [dm6]	C	T	1.411e^-4	0.785	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	10829763	2R_10829763_SNP [dm3] 2R_14942258_SNP [dm6]	T	A	1.417e^-4	0.785	UPSTREAM CG10257 INTERGENIC
3L	18034777	3L_18034777_SNP [dm3] 3L_18041677_SNP [dm6]	G	T	1.426e^-4	0.785	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
2R	16102012	2R_16102012_SNP [dm3] 2R_20214507_SNP [dm6]	G	A	1.428e^-4	0.785	INTERGENIC
X	20826251	X_20826251_SNP [dm3] X_20955224_SNP [dm6]	C	T	1.436e^-4	0.785	INTERGENIC
2L	11147936	2L_11147936_SNP [dm3] 2L_11147936_SNP [dm6]	A	T	1.436e^-4	0.785	INTRON Gyc32E
2R	18227913	2R_18227913_SNP [dm3] 2R_22340408_SNP [dm6]	T	G	1.437e^-4	0.785	INTRON Liprin-gamma
2L	8790314	2L_8790314_SNP [dm3] 2L_8790314_SNP [dm6]	C	G	1.440e^-4	0.785	INTERGENIC
2L	3378046	2L_3378046_SNP [dm3] 2L_3378046_SNP [dm6]	A	T	1.452e^-4	0.785	SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
2R	10829659	2R_10829659_SNP [dm3] 2R_14942154_SNP [dm6]	A	G	1.463e^-4	0.785	UPSTREAM CG10257 INTERGENIC
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	1.464e^-4	0.785	INTRON fry
2R	15540064	2R_15540064_SNP [dm3] 2R_19652559_SNP [dm6]	C	G	1.466e^-4	0.785	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
3L	2545488	3L_2545488_SNP [dm3] 3L_2545488_SNP [dm6]	A	G	1.467e^-4	0.785	INTRON Spn
2L	11147952	2L_11147952_SNP [dm3] 2L_11147952_SNP [dm6]	A	C	1.468e^-4	0.785	INTRON Gyc32E
2L	10061090	2L_10061090_SNP [dm3] 2L_10061090_SNP [dm6]	G	T	1.468e^-4	0.785	DOWNSTREAM Pen INTRON Spn31A
3L	13956677	3L_13956677_SNP [dm3] 3L_13963577_SNP [dm6]	C	T	1.470e^-4	0.785	SYNONYMOUS_CODING Meics DOWNSTREAM CG32137	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8607328	2R_8607328_SNP [dm3] 2R_12719823_SNP [dm6]	T	G	1.477e^-4	0.785	INTRON CG42663
3R	142490	3R_142490_SNP [dm3] 3R_4316768_SNP [dm6]	C	T	1.478e^-4	0.785	SYNONYMOUS_CODING Syt14
2R	12073089	2R_12073089_SNP [dm3] 2R_16185584_SNP [dm6]	C	T	1.480e^-4	0.785	SYNONYMOUS_CODING CG8441 UPSTREAM clu DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	11146992	3L_11146992_SNP [dm3] 3L_11153892_SNP [dm6]	G	C	1.492e^-4	0.785	INTRON CG32082
X	11302678	X_11302678_SNP [dm3] X_11408645_SNP [dm6]	G	A	1.494e^-4	0.785	UTR_3_PRIME dlg1 DOWNSTREAM dlg1
3L	6888627	3L_6888627_SNP [dm3] 3L_6895527_SNP [dm6]	G	T	1.497e^-4	0.785	INTERGENIC
2R	19690410	2R_19690410_SNP [dm3] 2R_23802887_SNP [dm6]	T	C	1.507e^-4	0.785	UTR_3_PRIME CG30177
2L	16402754	2L_16402754_SNP [dm3] 2L_16402754_SNP [dm6]	A	C	1.508e^-4	0.785	INTRON CG5888
2R	14791656	2R_14791656_SNP [dm3] 2R_18904151_SNP [dm6]	G	T	1.508e^-4	0.785	INTRON sano	TF binding site BDTNP1_TFBS_dl
2L	5718646	2L_5718646_SNP [dm3] 2L_5718646_SNP [dm6]	A	T	1.514e^-4	0.785	NON_SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011 INTRON CG11149
2R	9798932	2R_9798932_SNP [dm3] 2R_13911427_SNP [dm6]	G	A	1.517e^-4	0.785	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8148641	3R_8148641_SNP [dm3] 3R_12322919_SNP [dm6]	A	G	1.519e^-4	0.785	UPSTREAM CG10013 & 1 other INTERGENIC
2R	15570085	2R_15570085_SNP [dm3] 2R_19682580_SNP [dm6]	A	C	1.529e^-4	0.785	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	1.532e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25617567	3R_25617567_SNP [dm3] 3R_29791845_SNP [dm6]	G	T	1.537e^-4	0.785	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10021718	2R_10021718_SNP [dm3] 2R_14134213_SNP [dm6]	G	A	1.537e^-4	0.785	INTRON Prosap
2R	14925238	2R_14925238_SNP [dm3] 2R_19037733_SNP [dm6]	G	C	1.539e^-4	0.785	INTERGENIC
X	16279824	X_16279824_SNP [dm3] X_16385791_SNP [dm6]	C	T	1.541e^-4	0.785	UPSTREAM CG9992 & 1 other INTRON CG4239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26490751	3R_26490751_DEL [dm3] 3R_30665029_DEL [dm6]	CTCTTTTCGCTG...	C	1.545e^-4	0.785	EXON CR45191
2L	448813	2L_448813_SNP [dm3] 2L_448813_SNP [dm6]	T	G	1.552e^-4	0.785	UTR_3_PRIME crq DOWNSTREAM ex
2R	2718726	2R_2718726_SNP [dm3] 2R_6831221_SNP [dm6]	C	T	1.563e^-4	0.785	DOWNSTREAM CG34215 INTRON CG15236
2R	12073679	2R_12073679_SNP [dm3] 2R_16186174_SNP [dm6]	A	G	1.563e^-4	0.785	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	16925189	X_16925189_SNP [dm3] X_17031156_SNP [dm6]	C	T	1.567e^-4	0.785	INTRON CG45002
2R	19573464	2R_19573464_SNP [dm3] 2R_23685941_SNP [dm6]	T	A	1.580e^-4	0.785	UPSTREAM l_2_efl INTRON St3
3R	17956176	3R_17956176_SNP [dm3] 3R_22130454_SNP [dm6]	A	T	1.580e^-4	0.785	SPLICE_SITE_REGION CG42390 INTRON CG42390
2L	1635430	2L_1635430_SNP [dm3] 2L_1635430_SNP [dm6]	G	A	1.581e^-4	0.785	INTERGENIC
X	11287988	X_11287988_SNP [dm3] X_11393955_SNP [dm6]	T	G	1.589e^-4	0.785	INTRON dlg1
2L	9346938	2L_9346938_SNP [dm3] 2L_9346938_SNP [dm6]	A	T	1.590e^-4	0.785	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11515743	3L_11515743_SNP [dm3] 3L_11522643_SNP [dm6]	A	G	1.599e^-4	0.785	UTR_5_PRIME CG11714 DOWNSTREAM Mob2
2R	9914288	2R_9914288_SNP [dm3] 2R_14026783_SNP [dm6]	G	A	1.602e^-4	0.785	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	1675518	2L_1675518_SNP [dm3] 2L_1675518_SNP [dm6]	A	G	1.603e^-4	0.785	INTRON chinmo
2R	793883	2R_793883_SNP [dm3] 2R_4906378_SNP [dm6]	G	T	1.603e^-4	0.785	INTRON CG44102
X	3137316	X_3137316_SNP [dm3] X_3243283_SNP [dm6]	T	C	1.605e^-4	0.785	DOWNSTREAM ng1 & 1 other INTRON dnc
3L	15960340	3L_15960340_SNP [dm3] 3L_15967240_SNP [dm6]	A	G	1.608e^-4	0.785	SYNONYMOUS_CODING l_3_72Ab UPSTREAM CG10516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
2R	19462797	2R_19462797_SNP [dm3] 2R_23575274_SNP [dm6]	A	G	1.609e^-4	0.785	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12087409	2L_12087409_SNP [dm3] 2L_12087409_SNP [dm6]	G	T	1.614e^-4	0.785	DOWNSTREAM CR44592 EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	4163360	2L_4163360_SNP [dm3] 2L_4163360_SNP [dm6]	T	A	1.614e^-4	0.785	INTERGENIC
2R	9931296	2R_9931296_SNP [dm3] 2R_14043791_SNP [dm6]	C	T	1.619e^-4	0.785	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	14676216	2R_14676216_SNP [dm3] 2R_18788711_SNP [dm6]	G	T	1.620e^-4	0.785	INTRON CG15080
X	16946980	X_16946980_DEL [dm3] X_17052947_DEL [dm6]	GG	G	1.622e^-4	0.785	INTRON CG45002
X	7547548	X_7547548_SNP [dm3] X_7653515_SNP [dm6]	C	T	1.623e^-4	0.785	INTRON ct
X	6119168	X_6119168_SNP [dm3] X_6225135_SNP [dm6]	C	G	1.627e^-4	0.785	UTR_5_PRIME sqh UPSTREAM sqh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11799793	2R_11799793_SNP [dm3] 2R_15912288_SNP [dm6]	A	T	1.639e^-4	0.785	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12584129	X_12584129_SNP [dm3] X_12690096_SNP [dm6]	C	A	1.642e^-4	0.785	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_kni BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	935319	2L_935319_DEL [dm3] 2L_935319_DEL [dm6]	CGATTTCATTTCTCTAGA...	C	1.642e^-4	0.785	INTRON CG4341	TF binding site mE1_TFBS_Trl
2R	10014170	2R_10014170_SNP [dm3] 2R_14126665_SNP [dm6]	A	C	1.646e^-4	0.785	INTRON Prosap
X	2592936	X_2592936_SNP [dm3] X_2698903_SNP [dm6]	A	G	1.646e^-4	0.785	SYNONYMOUS_CODING CG2662 UPSTREAM CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8790262	2L_8790262_SNP [dm3] 2L_8790262_SNP [dm6]	C	A	1.649e^-4	0.785	INTERGENIC
X	1362717	X_1362717_SNP [dm3] X_1468684_SNP [dm6]	C	T	1.663e^-4	0.785	UTR_3_PRIME CG14777 DOWNSTREAM CG32808 INTRON CG14778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19688097	2L_19688097_SNP [dm3] 2L_19688097_SNP [dm6]	T	A	1.668e^-4	0.785	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	2545655	3L_2545655_SNP [dm3] 3L_2545655_SNP [dm6]	C	A	1.669e^-4	0.785	INTRON Spn
X	11873372	X_11873372_SNP [dm3] X_11979339_SNP [dm6]	G	A	1.690e^-4	0.785	INTRON cac
3L	4840590	3L_4840590_SNP [dm3] 3L_4840590_SNP [dm6]	G	C	1.690e^-4	0.785	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	15280332	3R_15280332_SNP [dm3] 3R_19454610_SNP [dm6]	A	T	1.691e^-4	0.785	INTRON CG31221
3L	7803403	3L_7803403_DEL [dm3] 3L_7810303_DEL [dm6]	ATG	A	1.704e^-4	0.785	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13197670	3R_13197670_SNP [dm3] 3R_17371948_SNP [dm6]	G	T	1.706e^-4	0.785	UPSTREAM CR44256 INTERGENIC
2L	17300314	2L_17300314_SNP [dm3] 2L_17300314_SNP [dm6]	C	G	1.706e^-4	0.785	INTERGENIC
2R	12023875	2R_12023875_SNP [dm3] 2R_16136370_SNP [dm6]	A	C	1.707e^-4	0.785	INTRON spin
2R	14791611	2R_14791611_SNP [dm3] 2R_18904106_SNP [dm6]	G	A	1.709e^-4	0.785	INTRON sano
3R	8431661	3R_8431661_SNP [dm3] 3R_12605939_SNP [dm6]	A	T	1.720e^-4	0.785	INTERGENIC
2R	1362633	2R_1362633_DEL [dm3] 2R_5475128_DEL [dm6]	TAA	T	1.721e^-4	0.785	INTRON CG30440
3R	20244146	3R_20244146_SNP [dm3] 3R_24418424_SNP [dm6]	A	G	1.722e^-4	0.785	INTRON nAChRalpha1
2L	4886714	2L_4886714_SNP [dm3] 2L_4886714_SNP [dm6]	A	G	1.722e^-4	0.785	INTERGENIC
3L	13221927	3L_13221927_SNP [dm3] 3L_13228827_SNP [dm6]	A	G	1.728e^-4	0.785	UTR_5_PRIME caps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3194564	X_3194564_SNP [dm3] X_3300531_SNP [dm6]	C	T	1.732e^-4	0.785	INTRON dnc
X	5204064	X_5204064_SNP [dm3] X_5310031_SNP [dm6]	G	C	1.734e^-4	0.785	DOWNSTREAM TrxT INTRON snf
2L	1932873	2L_1932873_INS [dm3] 2L_1932873_INS [dm6]	C	CCATTTGCAAGCAC...	1.735e^-4	0.785	INTRON CG7337
3L	17156863	3L_17156863_SNP [dm3] 3L_17163763_SNP [dm6]	T	C	1.737e^-4	0.785	INTRON Rbp6
2R	13739049	2R_13739049_SNP [dm3] 2R_17851544_SNP [dm6]	G	T	1.748e^-4	0.785	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	7748848	3L_7748848_SNP [dm3] 3L_7755748_SNP [dm6]	G	A	1.750e^-4	0.785	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
2L	12505603	2L_12505603_INS [dm3] 2L_12505603_INS [dm6]	A	AA	1.751e^-4	0.785	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl
X	10751382	X_10751382_SNP [dm3] X_10857349_SNP [dm6]	C	T	1.755e^-4	0.785	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12073113	2R_12073113_SNP [dm3] 2R_16185608_SNP [dm6]	C	T	1.761e^-4	0.785	SYNONYMOUS_CODING CG8441 UPSTREAM clu DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	8114726	2R_8114726_SNP [dm3] 2R_12227221_SNP [dm6]	A	G	1.764e^-4	0.785	UPSTREAM CG8854 INTRON CG8854
2L	19884967	2L_19884967_SNP [dm3] 2L_19884967_SNP [dm6]	C	T	1.766e^-4	0.785	INTRON sick
2R	20477448	2R_20477448_SNP [dm3] 2R_24589925_SNP [dm6]	C	T	1.768e^-4	0.785	INTRON pio
2L	9079134	2L_9079134_SNP [dm3] 2L_9079134_SNP [dm6]	C	T	1.771e^-4	0.785	INTERGENIC
2R	9680600	2R_9680600_SNP [dm3] 2R_13793095_SNP [dm6]	G	T	1.779e^-4	0.785	DOWNSTREAM CR43811 INTERGENIC
3L	7803402	3L_7803402_SNP [dm3] 3L_7810302_SNP [dm6]	T	A	1.780e^-4	0.785	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14925367	2R_14925367_SNP [dm3] 2R_19037862_SNP [dm6]	A	G	1.785e^-4	0.785	INTERGENIC
3R	17293823	3R_17293823_SNP [dm3] 3R_21468101_SNP [dm6]	T	C	1.786e^-4	0.785	INTERGENIC
2L	7466034	2L_7466034_DEL [dm3] 2L_7466034_DEL [dm6]	TA	T	1.790e^-4	0.785	UPSTREAM CG6055 INTERGENIC
X	1213593	X_1213593_SNP [dm3] X_1319560_SNP [dm6]	T	C	1.791e^-4	0.785	INTRON DAAM
X	16997410	X_16997410_SNP [dm3] X_17103377_SNP [dm6]	G	A	1.799e^-4	0.787	SYNONYMOUS_CODING CG4991
X	5204053	X_5204053_SNP [dm3] X_5310020_SNP [dm6]	G	T	1.816e^-4	0.791	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
2R	17649122	2R_17649122_SNP [dm3] 2R_21761617_SNP [dm6]	T	G	1.820e^-4	0.791	INTERGENIC
2R	9914329	2R_9914329_SNP [dm3] 2R_14026824_SNP [dm6]	C	G	1.828e^-4	0.791	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	8245979	2L_8245979_SNP [dm3] 2L_8245979_SNP [dm6]	G	T	1.846e^-4	0.791	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	15939871	2R_15939871_SNP [dm3] 2R_20052366_SNP [dm6]	C	T	1.854e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	12520649	2L_12520649_SNP [dm3] 2L_12520649_SNP [dm6]	G	T	1.857e^-4	0.791	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
2R	14791561	2R_14791561_SNP [dm3] 2R_18904056_SNP [dm6]	G	T	1.864e^-4	0.791	INTRON sano
3L	5400356	3L_5400356_SNP [dm3] 3L_5407256_SNP [dm6]	C	G	1.864e^-4	0.791	INTERGENIC
2L	4051240	2L_4051240_SNP [dm3] 2L_4051240_SNP [dm6]	C	T	1.867e^-4	0.791	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7581572	2L_7581572_SNP [dm3] 2L_7581572_SNP [dm6]	A	T	1.868e^-4	0.791	UPSTREAM Spn28B INTERGENIC
2R	17649078	2R_17649078_SNP [dm3] 2R_21761573_SNP [dm6]	T	C	1.870e^-4	0.791	INTERGENIC
2R	10013737	2R_10013737_SNP [dm3] 2R_14126232_SNP [dm6]	A	T	1.887e^-4	0.791	INTRON Prosap
3R	1980250	3R_1980250_DEL [dm3] 3R_6154528_DEL [dm6]	CAAA	TCT	1.892e^-4	0.791	INTRON CG31559
3R	26490454	3R_26490454_SNP [dm3] 3R_30664732_SNP [dm6]	G	A	1.893e^-4	0.791	UPSTREAM CR45191 INTERGENIC
3L	17150308	3L_17150308_SNP [dm3] 3L_17157208_SNP [dm6]	C	G	1.893e^-4	0.791	INTRON Rbp6
2R	9792734	2R_9792734_SNP [dm3] 2R_13905229_SNP [dm6]	A	G	1.893e^-4	0.791	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2L	17778720	2L_17778720_SNP [dm3] 2L_17778720_SNP [dm6]	G	C	1.894e^-4	0.791	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12091230	2R_12091230_SNP [dm3] 2R_16203725_SNP [dm6]	G	A	1.897e^-4	0.791	UTR_3_PRIME mrj UPSTREAM shark
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	1.903e^-4	0.791	INTERGENIC
X	16946999	X_16946999_SNP [dm3] X_17052966_SNP [dm6]	A	T	1.904e^-4	0.791	INTRON CG45002
X	9006430	X_9006430_SNP [dm3] X_9112397_SNP [dm6]	G	A	1.905e^-4	0.791	INTRON AP-1gamma
3L	23465097	3L_23465097_SNP [dm3] 3L_23471997_SNP [dm6]	G	A	1.906e^-4	0.791	INTERGENIC	transposable element FlyBase
2L	4994383	2L_4994383_SNP [dm3] 2L_4994383_SNP [dm6]	A	G	1.911e^-4	0.791	SYNONYMOUS_CODING Rtnl1
2R	18975075	2R_18975075_SNP [dm3] 2R_23087552_SNP [dm6]	C	G	1.914e^-4	0.791	NON_SYNONYMOUS_CODING CG13538
3R	26867558	3R_26867558_SNP [dm3] 3R_31041836_SNP [dm6]	T	C	1.922e^-4	0.791	SYNONYMOUS_CODING CanA1
2R	7367446	2R_7367446_SNP [dm3] 2R_11479941_SNP [dm6]	T	A	1.929e^-4	0.791	INTRON inv
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	1.932e^-4	0.791	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3R	8151852	3R_8151852_SNP [dm3] 3R_12326130_SNP [dm6]	C	G	1.943e^-4	0.791	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8334285	2R_8334285_SNP [dm3] 2R_12446780_SNP [dm6]	C	A	1.949e^-4	0.791	INTRON Dyb
X	2825243	X_2825243_SNP [dm3] X_2931210_SNP [dm6]	C	G	1.954e^-4	0.791	SYNONYMOUS_CODING CG32793 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14024489	3R_14024489_SNP [dm3] 3R_18198767_SNP [dm6]	T	A	1.955e^-4	0.791	UTR_5_PRIME Ssdp INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6622608	2R_6622608_INS [dm3] 2R_10735103_INS [dm6]	A	ACGAGCGGAATTCATATGCT...	1.956e^-4	0.791	UPSTREAM CG7220 INTRON CG7220
2R	16294795	2R_16294795_SNP [dm3] 2R_20407290_SNP [dm6]	G	T	1.960e^-4	0.791	INTERGENIC
2R	9677870	2R_9677870_SNP [dm3] 2R_13790365_SNP [dm6]	C	G	1.962e^-4	0.791	INTERGENIC
3R	13242326	3R_13242326_SNP [dm3] 3R_17416604_SNP [dm6]	T	A	1.966e^-4	0.791	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
3R	14024436	3R_14024436_SNP [dm3] 3R_18198714_SNP [dm6]	T	C	1.968e^-4	0.791	UTR_5_PRIME Ssdp INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7281732	2L_7281732_SNP [dm3] 2L_7281732_SNP [dm6]	C	T	1.990e^-4	0.791	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6004666	2R_6004666_SNP [dm3] 2R_10117161_SNP [dm6]	T	C	1.991e^-4	0.791	UTR_3_PRIME Pfk UPSTREAM dmpd DOWNSTREAM Pfk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	20010736	X_20010736_SNP [dm3] X_20116703_SNP [dm6]	T	A	1.992e^-4	0.791	INTERGENIC
X	6119175	X_6119175_SNP [dm3] X_6225142_SNP [dm6]	T	C	2.006e^-4	0.791	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17778625	2L_17778625_MNP [dm3] 2L_17778625_MNP [dm6]	GTT	TCG	2.014e^-4	0.791	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3287181	2L_3287181_SNP [dm3] 2L_3287181_SNP [dm6]	G	T	2.018e^-4	0.791	UPSTREAM CR44485 INTERGENIC
2L	8652765	2L_8652765_SNP [dm3] 2L_8652765_SNP [dm6]	G	A	2.021e^-4	0.791	INTRON Sema-1a
2R	10012115	2R_10012115_SNP [dm3] 2R_14124610_SNP [dm6]	G	A	2.021e^-4	0.791	INTRON Prosap
2R	12091172	2R_12091172_SNP [dm3] 2R_16203667_SNP [dm6]	C	T	2.023e^-4	0.791	UTR_3_PRIME mrj UPSTREAM shark
X	16611405	X_16611405_SNP [dm3] X_16717372_SNP [dm6]	T	C	2.024e^-4	0.791	INTRON CG34325
3R	8485694	3R_8485694_SNP [dm3] 3R_12659972_SNP [dm6]	C	A	2.025e^-4	0.791	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
X	11302043	X_11302043_SNP [dm3] X_11408010_SNP [dm6]	T	C	2.029e^-4	0.791	UTR_3_PRIME dlg1 DOWNSTREAM dlg1
3L	21901406	3L_21901406_SNP [dm3] 3L_21908306_SNP [dm6]	A	G	2.029e^-4	0.791	INTRON mub
3L	23148174	3L_23148174_SNP [dm3] 3L_23155074_SNP [dm6]	A	G	2.036e^-4	0.791	INTERGENIC	transposable element FlyBase
X	17269583	X_17269583_SNP [dm3] X_17375550_SNP [dm6]	A	G	2.040e^-4	0.791	INTERGENIC
3R	25476842	3R_25476842_SNP [dm3] 3R_29651120_SNP [dm6]	C	T	2.040e^-4	0.791	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2R	12088792	2R_12088792_SNP [dm3] 2R_16201287_SNP [dm6]	A	G	2.044e^-4	0.791	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4748333	3L_4748333_SNP [dm3] 3L_4748333_SNP [dm6]	G	C	2.047e^-4	0.791	INTRON RhoGEF64C
X	16947018	X_16947018_DEL [dm3] X_17052985_DEL [dm6]	TTGTAATATATTATATATAT...	GG	2.052e^-4	0.791	INTRON CG45002
3R	20807100	3R_20807100_INS [dm3] 3R_24981378_INS [dm6]	G	GG	2.054e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	10060129	2R_10060129_SNP [dm3] 2R_14172624_SNP [dm6]	A	G	2.064e^-4	0.791	NON_SYNONYMOUS_CODING CG8331 DOWNSTREAM mRpS16	TF binding site mE1_TFBS_cad
3R	26490384	3R_26490384_SNP [dm3] 3R_30664662_SNP [dm6]	G	A	2.065e^-4	0.791	UPSTREAM CR45191 INTERGENIC
3R	17293275	3R_17293275_SNP [dm3] 3R_21467553_SNP [dm6]	T	A	2.065e^-4	0.791	INTERGENIC
2R	20192207	2R_20192207_SNP [dm3] 2R_24304684_SNP [dm6]	C	T	2.065e^-4	0.791	INTERGENIC	regulatory region REDfly_CRMs
2L	9973685	2L_9973685_SNP [dm3] 2L_9973685_SNP [dm6]	C	A	2.067e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	2.082e^-4	0.795	INTRON kek5
3L	9666882	3L_9666882_SNP [dm3] 3L_9673782_SNP [dm6]	G	T	2.085e^-4	0.795	INTRON fry
2R	10016218	2R_10016218_SNP [dm3] 2R_14128713_SNP [dm6]	T	A	2.093e^-4	0.796	INTRON Prosap
X	21888123	X_21888123_SNP [dm3] X_22486287_SNP [dm6]	T	C	2.101e^-4	0.796	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 INTRON Cp110	transposable element FlyBase
2R	19990021	2R_19990021_SNP [dm3] 2R_24102498_SNP [dm6]	C	A	2.112e^-4	0.796	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12297972	2R_12297972_INS [dm3] 2R_16410467_INS [dm6]	A	ACTC	2.117e^-4	0.796	INTRON Sema-2b
3L	5216153	3L_5216153_SNP [dm3] 3L_5223053_SNP [dm6]	T	A	2.124e^-4	0.796	INTRON shep
3R	8485769	3R_8485769_SNP [dm3] 3R_12660047_SNP [dm6]	G	A	2.127e^-4	0.796	INTRON CG6225	TF binding site mE1_TFBS_cad
2R	10033113	2R_10033113_SNP [dm3] 2R_14145608_SNP [dm6]	C	A	2.134e^-4	0.796	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	22078319	2L_22078319_SNP [dm3] 2L_22078319_SNP [dm6]	C	G	2.134e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	5204069	X_5204069_DEL [dm3] X_5310036_DEL [dm6]	AA	A	2.146e^-4	0.796	DOWNSTREAM TrxT INTRON snf
3L	1910277	3L_1910277_SNP [dm3] 3L_1910277_SNP [dm6]	G	A	2.148e^-4	0.796	UPSTREAM CG1887 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	17033987	3R_17033987_SNP [dm3] 3R_21208265_SNP [dm6]	T	C	2.154e^-4	0.796	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3L	12605189	3L_12605189_SNP [dm3] 3L_12612089_SNP [dm6]	G	T	2.162e^-4	0.796	INTRON caup
3L	11766616	3L_11766616_SNP [dm3] 3L_11773516_SNP [dm6]	A	T	2.166e^-4	0.796	DOWNSTREAM mir-956 & 2 others INTERGENIC
2R	18231986	2R_18231986_SNP [dm3] 2R_22344481_SNP [dm6]	G	A	2.175e^-4	0.796	INTRON Liprin-gamma
2R	15939780	2R_15939780_SNP [dm3] 2R_20052275_SNP [dm6]	G	A	2.177e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	20801971	3R_20801971_SNP [dm3] 3R_24976249_SNP [dm6]	G	C	2.178e^-4	0.796	INTERGENIC
3R	8138927	3R_8138927_SNP [dm3] 3R_12313205_SNP [dm6]	T	G	2.179e^-4	0.796	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2686887	2L_2686887_SNP [dm3] 2L_2686887_SNP [dm6]	A	G	2.181e^-4	0.796	INTRON CG31690
2R	12146480	2R_12146480_SNP [dm3] 2R_16258975_SNP [dm6]	C	T	2.185e^-4	0.796	INTRON CngA
2L	9825822	2L_9825822_SNP [dm3] 2L_9825822_SNP [dm6]	C	A	2.187e^-4	0.796	INTRON nAChRalpha6
3L	6387908	3L_6387908_SNP [dm3] 3L_6394808_SNP [dm6]	A	T	2.190e^-4	0.796	INTERGENIC
2R	7269285	2R_7269285_SNP [dm3] 2R_11381780_SNP [dm6]	A	G	2.195e^-4	0.796	SYNONYMOUS_CODING Sod3
3R	18324842	3R_18324842_INS [dm3] 3R_22499120_INS [dm6]	C	CC	2.199e^-4	0.796	INTRON Octbeta1R
2R	19234865	2R_19234865_SNP [dm3] 2R_23347342_SNP [dm6]	A	C	2.200e^-4	0.796	NON_SYNONYMOUS_CODING CG9863 START_GAINED CG3502 UTR_5_PRIME CG3502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20177022	2R_20177022_SNP [dm3] 2R_24289499_SNP [dm6]	A	G	2.204e^-4	0.796	SYNONYMOUS_CODING nvy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10033118	2R_10033118_SNP [dm3] 2R_14145613_SNP [dm6]	T	G	2.210e^-4	0.796	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	14791544	2R_14791544_DEL [dm3] 2R_18904039_DEL [dm6]	TTTATTTGTGACAAC...	T	2.217e^-4	0.796	INTRON sano
X	5323421	X_5323421_SNP [dm3] X_5429388_SNP [dm6]	C	T	2.219e^-4	0.796	UPSTREAM CG15784 DOWNSTREAM CR45517 INTERGENIC
2R	3343930	2R_3343930_SNP [dm3] 2R_7456425_SNP [dm6]	G	C	2.220e^-4	0.796	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	624024	2L_624024_SNP [dm3] 2L_624024_SNP [dm6]	C	T	2.221e^-4	0.796	UPSTREAM lectin-21Ca DOWNSTREAM CR44797 EXON CR44798
2R	10033124	2R_10033124_SNP [dm3] 2R_14145619_SNP [dm6]	T	C	2.231e^-4	0.796	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	18392927	3R_18392927_SNP [dm3] 3R_22567205_SNP [dm6]	T	C	2.244e^-4	0.796	INTERGENIC
2L	9348781	2L_9348781_SNP [dm3] 2L_9348781_SNP [dm6]	A	C	2.246e^-4	0.796	UPSTREAM CG43350 EXON CR44802
3L	16811931	3L_16811931_SNP [dm3] 3L_16818831_SNP [dm6]	G	A	2.248e^-4	0.796	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5443590	2R_5443590_SNP [dm3] 2R_9556085_SNP [dm6]	G	A	2.251e^-4	0.796	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16811946	3L_16811946_SNP [dm3] 3L_16818846_SNP [dm6]	A	T	2.254e^-4	0.796	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12374656	3L_12374656_SNP [dm3] 3L_12381556_SNP [dm6]	C	T	2.256e^-4	0.796	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	12922817	3L_12922817_SNP [dm3] 3L_12929717_SNP [dm6]	C	T	2.257e^-4	0.796	INTERGENIC
3L	7748843	3L_7748843_SNP [dm3] 3L_7755743_SNP [dm6]	G	A	2.268e^-4	0.796	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
3R	14709059	3R_14709059_MNP [dm3] 3R_18883337_MNP [dm6]	CTA	TAT	2.268e^-4	0.796	INTERGENIC
2L	20550001	2L_20550001_SNP [dm3] 2L_20550001_SNP [dm6]	T	C	2.268e^-4	0.796	INTERGENIC
2L	4159247	2L_4159247_SNP [dm3] 2L_4159247_SNP [dm6]	G	C	2.270e^-4	0.796	INTERGENIC
X	16946914	X_16946914_DEL [dm3] X_17052881_DEL [dm6]	TTTTTTATCACATCTAT...	T	2.274e^-4	0.796	INTRON CG45002
2R	9680269	2R_9680269_SNP [dm3] 2R_13792764_SNP [dm6]	T	A	2.280e^-4	0.796	DOWNSTREAM CR43811 INTERGENIC
2L	10061183	2L_10061183_SNP [dm3] 2L_10061183_SNP [dm6]	A	T	2.282e^-4	0.796	INTRON Spn31A
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	2.288e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4994486	2L_4994486_SNP [dm3] 2L_4994486_SNP [dm6]	T	C	2.291e^-4	0.796	INTRON Rtnl1
2L	8245991	2L_8245991_SNP [dm3] 2L_8245991_SNP [dm6]	C	G	2.298e^-4	0.796	SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	2821788	2R_2821788_SNP [dm3] 2R_6934283_SNP [dm6]	G	A	2.299e^-4	0.796	INTRON mim	TF binding site BDTNP1_TFBS_prd
3R	15145961	3R_15145961_SNP [dm3] 3R_19320239_SNP [dm6]	G	A	2.299e^-4	0.796	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21707051	3R_21707051_SNP [dm3] 3R_25881329_SNP [dm6]	C	T	2.315e^-4	0.796	UTR_5_PRIME Tsp96F UPSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20217102	2R_20217102_SNP [dm3] 2R_24329579_SNP [dm6]	T	A	2.322e^-4	0.796	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
X	13170373	X_13170373_INS [dm3] X_13276340_INS [dm6]	T	TATGT	2.331e^-4	0.796	INTRON HDAC4
3L	10836909	3L_10836909_SNP [dm3] 3L_10843809_SNP [dm6]	T	C	2.333e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17779984	2R_17779984_SNP [dm3] 2R_21892479_SNP [dm6]	T	A	2.335e^-4	0.796	INTRON Fili
X	2829939	X_2829939_SNP [dm3] X_2935906_SNP [dm6]	A	G	2.337e^-4	0.796	NON_SYNONYMOUS_CODING CG3592 INTRON kirre
2R	16584395	2R_16584395_DEL [dm3] 2R_20696890_DEL [dm6]	CTGAT	C	2.337e^-4	0.796	INTERGENIC
2R	7499421	2R_7499421_INS [dm3] 2R_11611916_INS [dm6]	G	GG	2.338e^-4	0.796	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	12922800	3L_12922800_SNP [dm3] 3L_12929700_SNP [dm6]	A	G	2.341e^-4	0.796	INTERGENIC
3L	1233234	3L_1233234_SNP [dm3] 3L_1233234_SNP [dm6]	C	T	2.352e^-4	0.796	UPSTREAM CG33966 DOWNSTREAM mwh INTRON CG33965
3L	14426502	3L_14426502_SNP [dm3] 3L_14433402_SNP [dm6]	C	T	2.355e^-4	0.796	INTRON bbg
2R	10025638	2R_10025638_SNP [dm3] 2R_14138133_SNP [dm6]	A	G	2.358e^-4	0.796	INTRON Prosap
3L	10838588	3L_10838588_SNP [dm3] 3L_10845488_SNP [dm6]	G	A	2.360e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5604337	3L_5604337_SNP [dm3] 3L_5611237_SNP [dm6]	A	G	2.366e^-4	0.796	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
X	11873268	X_11873268_SNP [dm3] X_11979235_SNP [dm6]	C	T	2.373e^-4	0.796	INTRON cac
3L	4840553	3L_4840553_SNP [dm3] 3L_4840553_SNP [dm6]	T	A	2.374e^-4	0.796	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	116378	3R_116378_INS [dm3] 3R_4290656_INS [dm6]	A	AA	2.380e^-4	0.796	INTRON cpx
2L	10431187	2L_10431187_SNP [dm3] 2L_10431187_SNP [dm6]	A	T	2.382e^-4	0.796	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26867953	3R_26867953_SNP [dm3] 3R_31042231_SNP [dm6]	T	G	2.382e^-4	0.796	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
2L	17778638	2L_17778638_SNP [dm3] 2L_17778638_SNP [dm6]	A	C	2.389e^-4	0.796	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16109786	3L_16109786_SNP [dm3] 3L_16116686_SNP [dm6]	C	T	2.390e^-4	0.796	INTRON Taf4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5713162	3L_5713162_SNP [dm3] 3L_5720062_SNP [dm6]	G	A	2.397e^-4	0.797	UPSTREAM snoRNA:Me18S-A1494 INTRON sif
2L	14307045	2L_14307045_SNP [dm3] 2L_14307045_SNP [dm6]	G	A	2.401e^-4	0.797	INTRON wb
2R	18914580	2R_18914580_SNP [dm3] 2R_23027057_SNP [dm6]	A	C	2.426e^-4	0.801	INTRON twi & 1 other
2L	7996807	2L_7996807_SNP [dm3] 2L_7996807_SNP [dm6]	C	T	2.434e^-4	0.801	UTR_5_PRIME CG7227 DOWNSTREAM CR44996
2R	9184725	2R_9184725_SNP [dm3] 2R_13297220_SNP [dm6]	A	C	2.444e^-4	0.801	UTR_3_PRIME CG4734
X	21457733	X_21457733_INS [dm3] X_21586706_INS [dm6]	A	AAA	2.450e^-4	0.801	INTERGENIC
3R	25592297	3R_25592297_SNP [dm3] 3R_29766575_SNP [dm6]	A	G	2.453e^-4	0.801	UTR_5_PRIME kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11766718	3L_11766718_SNP [dm3] 3L_11773618_SNP [dm6]	A	G	2.462e^-4	0.801	DOWNSTREAM mir-956 & 2 others INTERGENIC
2L	17292492	2L_17292492_SNP [dm3] 2L_17292492_SNP [dm6]	A	T	2.465e^-4	0.801	UPSTREAM CG6380 INTERGENIC
2R	8531884	2R_8531884_SNP [dm3] 2R_12644379_SNP [dm6]	A	G	2.478e^-4	0.801	INTRON CG8785	TF binding site mE1_TFBS_cad
2L	7011957	2L_7011957_SNP [dm3] 2L_7011957_SNP [dm6]	A	C	2.501e^-4	0.801	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2R	9969066	2R_9969066_SNP [dm3] 2R_14081561_SNP [dm6]	C	T	2.504e^-4	0.801	INTRON Prosap
2R	4912376	2R_4912376_SNP [dm3] 2R_9024871_SNP [dm6]	C	G	2.506e^-4	0.801	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2749861	3R_2749861_SNP [dm3] 3R_6924139_SNP [dm6]	T	A	2.506e^-4	0.801	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19690403	2R_19690403_SNP [dm3] 2R_23802880_SNP [dm6]	A	C	2.509e^-4	0.801	UTR_3_PRIME CG30177
3L	2367815	3L_2367815_SNP [dm3] 3L_2367815_SNP [dm6]	G	T	2.515e^-4	0.801	DOWNSTREAM CG1317 INTERGENIC
3R	19919068	3R_19919068_SNP [dm3] 3R_24093346_SNP [dm6]	G	A	2.524e^-4	0.801	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1932956	2L_1932956_SNP [dm3] 2L_1932956_SNP [dm6]	G	T	2.524e^-4	0.801	INTRON CG7337
3R	26871778	3R_26871778_SNP [dm3] 3R_31046056_SNP [dm6]	G	A	2.526e^-4	0.801	UPSTREAM CG33920 INTRON CanA1	TF binding site BDTNP1_TFBS_prd
2L	12042656	2L_12042656_SNP [dm3] 2L_12042656_SNP [dm6]	C	T	2.531e^-4	0.801	SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12042711	2L_12042711_SNP [dm3] 2L_12042711_SNP [dm6]	G	A	2.531e^-4	0.801	NON_SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11288140	X_11288140_SNP [dm3] X_11394107_SNP [dm6]	C	T	2.534e^-4	0.801	INTRON dlg1
2L	1036695	2L_1036695_SNP [dm3] 2L_1036695_SNP [dm6]	G	T	2.536e^-4	0.801	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8790407	2L_8790407_DEL [dm3] 2L_8790407_DEL [dm6]	TT	T	2.541e^-4	0.801	INTERGENIC
2R	7295645	2R_7295645_SNP [dm3] 2R_11408140_SNP [dm6]	C	T	2.542e^-4	0.801	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4788231	2L_4788231_SNP [dm3] 2L_4788231_SNP [dm6]	G	C	2.544e^-4	0.801	INTRON CG15630
3L	1309109	3L_1309109_SNP [dm3] 3L_1309109_SNP [dm6]	A	G	2.556e^-4	0.801	SYNONYMOUS_CODING CG2469	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7365822	2R_7365822_SNP [dm3] 2R_11478317_SNP [dm6]	C	A	2.557e^-4	0.801	INTRON inv	TF binding site BDTNP1_TFBS_dl
2R	20201801	2R_20201801_SNP [dm3] 2R_24314278_SNP [dm6]	T	G	2.564e^-4	0.801	INTERGENIC
2L	7581569	2L_7581569_SNP [dm3] 2L_7581569_SNP [dm6]	T	A	2.565e^-4	0.801	UPSTREAM Spn28B INTERGENIC
3L	7467161	3L_7467161_SNP [dm3] 3L_7474061_SNP [dm6]	A	G	2.575e^-4	0.801	INTERGENIC
3L	12922790	3L_12922790_SNP [dm3] 3L_12929690_SNP [dm6]	A	T	2.584e^-4	0.801	INTERGENIC
3L	10836873	3L_10836873_SNP [dm3] 3L_10843773_SNP [dm6]	A	G	2.585e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17647635	2R_17647635_INS [dm3] 2R_21760130_INS [dm6]	C	CC	2.586e^-4	0.801	INTERGENIC
3L	17148792	3L_17148792_SNP [dm3] 3L_17155692_SNP [dm6]	T	G	2.588e^-4	0.801	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	5872711	X_5872711_SNP [dm3] X_5978678_SNP [dm6]	A	G	2.596e^-4	0.801	INTRON Grip
2L	17775496	2L_17775496_SNP [dm3] 2L_17775496_SNP [dm6]	T	A	2.607e^-4	0.801	INTRON CadN
3R	14497882	3R_14497882_SNP [dm3] 3R_18672160_SNP [dm6]	T	G	2.608e^-4	0.801	DOWNSTREAM CG31230 INTRON CG7702
2L	18809561	2L_18809561_SNP [dm3] 2L_18809561_SNP [dm6]	C	T	2.610e^-4	0.801	UTR_3_PRIME CG10570 & 1 other DOWNSTREAM CG10570 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5712997	2L_5712997_SNP [dm3] 2L_5712997_SNP [dm6]	T	C	2.616e^-4	0.801	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7220794	2R_7220794_SNP [dm3] 2R_11333289_SNP [dm6]	T	C	2.622e^-4	0.801	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9966984	2R_9966984_SNP [dm3] 2R_14079479_SNP [dm6]	T	C	2.622e^-4	0.801	INTRON Prosap
2R	9662372	2R_9662372_SNP [dm3] 2R_13774867_SNP [dm6]	T	C	2.623e^-4	0.801	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
2R	9959673	2R_9959673_SNP [dm3] 2R_14072168_SNP [dm6]	T	G	2.635e^-4	0.801	INTRON Prosap	TF binding site mE1_TFBS_cad
2R	1324784	2R_1324784_SNP [dm3] 2R_5437279_SNP [dm6]	T	C	2.643e^-4	0.801	INTRON laccase2	transposable element FlyBase
X	6120045	X_6120045_SNP [dm3] X_6226012_SNP [dm6]	T	A	2.648e^-4	0.801	UTR_5_PRIME CG14446 UPSTREAM sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	8151847	3R_8151847_SNP [dm3] 3R_12326125_SNP [dm6]	C	T	2.649e^-4	0.801	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	15570066	2R_15570066_SNP [dm3] 2R_19682561_SNP [dm6]	C	G	2.649e^-4	0.801	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25128515	3R_25128515_SNP [dm3] 3R_29302793_SNP [dm6]	T	C	2.654e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9200038	2L_9200038_SNP [dm3] 2L_9200038_SNP [dm6]	C	T	2.658e^-4	0.801	INTRON tai
X	6732826	X_6732826_SNP [dm3] X_6838793_SNP [dm6]	T	A	2.680e^-4	0.801	UTR_3_PRIME CG14435 DOWNSTREAM nonC & 1 other
2R	13417770	2R_13417770_DEL [dm3] 2R_17530265_DEL [dm6]	TTATA	T	2.680e^-4	0.801	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15781521	2R_15781521_SNP [dm3] 2R_19894016_SNP [dm6]	T	C	2.687e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14304576	2L_14304576_SNP [dm3] 2L_14304576_SNP [dm6]	G	A	2.690e^-4	0.801	INTRON wb	TF binding site mE1_TFBS_inv
3R	10058269	3R_10058269_SNP [dm3] 3R_14232547_SNP [dm6]	T	A	2.692e^-4	0.801	INTERGENIC
2R	9509560	2R_9509560_SNP [dm3] 2R_13622055_SNP [dm6]	G	C	2.693e^-4	0.801	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24175686	3R_24175686_SNP [dm3] 3R_28349964_SNP [dm6]	C	T	2.702e^-4	0.801	INTERGENIC
2R	18910253	2R_18910253_SNP [dm3] 2R_23022730_SNP [dm6]	A	T	2.703e^-4	0.801	INTRON twi & 1 other
2R	12146503	2R_12146503_SNP [dm3] 2R_16258998_SNP [dm6]	A	C	2.704e^-4	0.801	INTRON CngA
X	6818554	X_6818554_SNP [dm3] X_6924521_SNP [dm6]	C	G	2.708e^-4	0.801	INTRON CG14431
3R	16198778	3R_16198778_SNP [dm3] 3R_20373056_SNP [dm6]	T	G	2.710e^-4	0.801	INTERGENIC
2L	7581603	2L_7581603_SNP [dm3] 2L_7581603_SNP [dm6]	A	G	2.719e^-4	0.801	UPSTREAM Spn28B INTERGENIC
2R	9914264	2R_9914264_SNP [dm3] 2R_14026759_SNP [dm6]	A	G	2.726e^-4	0.801	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	5265001	2L_5265001_SNP [dm3] 2L_5265001_SNP [dm6]	T	C	2.728e^-4	0.801	SYNONYMOUS_CODING Cyp4ac1 INTRON tkv
2R	18571595	2R_18571595_SNP [dm3] 2R_22684090_SNP [dm6]	G	C	2.736e^-4	0.801	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17975658	3R_17975658_SNP [dm3] 3R_22149936_SNP [dm6]	G	A	2.740e^-4	0.801	INTRON SKIP	TF binding site mE1_TFBS_cnc
X	14654576	X_14654576_SNP [dm3] X_14760543_SNP [dm6]	C	A	2.745e^-4	0.801	INTRON CG15890
2L	8051292	2L_8051292_SNP [dm3] 2L_8051292_SNP [dm6]	G	T	2.746e^-4	0.801	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11972589	2R_11972589_SNP [dm3] 2R_16085084_SNP [dm6]	G	A	2.748e^-4	0.801	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1967992	3L_1967992_SNP [dm3] 3L_1967992_SNP [dm6]	A	C	2.748e^-4	0.801	INTRON CG1927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6110949	2R_6110949_INS [dm3] 2R_10223444_INS [dm6]	G	GG	2.751e^-4	0.801	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
3L	2182882	3L_2182882_SNP [dm3] 3L_2182882_SNP [dm6]	C	T	2.752e^-4	0.801	INTERGENIC
2L	7581564	2L_7581564_SNP [dm3] 2L_7581564_SNP [dm6]	T	A	2.764e^-4	0.801	UPSTREAM Spn28B INTERGENIC
3L	13225390	3L_13225390_SNP [dm3] 3L_13232290_SNP [dm6]	C	A	2.771e^-4	0.801	INTRON caps
3L	5984434	3L_5984434_SNP [dm3] 3L_5991334_SNP [dm6]	A	T	2.778e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	2.779e^-4	0.801	INTRON Spn31A
X	20607560	X_20607560_INS [dm3] X_20736533_INS [dm6]	C	CCAA	2.781e^-4	0.801	UPSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9964668	2R_9964668_SNP [dm3] 2R_14077163_SNP [dm6]	G	C	2.781e^-4	0.801	INTRON Prosap
X	19931402	X_19931402_SNP [dm3] X_20037369_SNP [dm6]	G	A	2.783e^-4	0.801	INTRON Dop2R
3R	7882064	3R_7882064_SNP [dm3] 3R_12056342_SNP [dm6]	C	T	2.787e^-4	0.801	INTERGENIC
2R	9914255	2R_9914255_SNP [dm3] 2R_14026750_SNP [dm6]	A	T	2.791e^-4	0.801	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	15314848	3R_15314848_SNP [dm3] 3R_19489126_SNP [dm6]	A	G	2.793e^-4	0.801	DOWNSTREAM CG15025 INTRON Dys
2L	8391597	2L_8391597_SNP [dm3] 2L_8391597_SNP [dm6]	T	C	2.799e^-4	0.801	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM Acp29AB
X	21457547	X_21457547_SNP [dm3] X_21586520_SNP [dm6]	G	C	2.810e^-4	0.801	INTERGENIC
X	5443755	X_5443755_SNP [dm3] X_5549722_SNP [dm6]	T	A	2.811e^-4	0.801	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11873412	X_11873412_SNP [dm3] X_11979379_SNP [dm6]	A	G	2.816e^-4	0.801	INTRON cac
X	21457297	X_21457297_SNP [dm3] X_21586270_SNP [dm6]	T	C	2.817e^-4	0.801	INTERGENIC
X	6119463	X_6119463_INS [dm3] X_6225430_INS [dm6]	T	TA	2.820e^-4	0.801	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2R	12348012	2R_12348012_SNP [dm3] 2R_16460507_SNP [dm6]	C	T	2.821e^-4	0.801	INTERGENIC
3R	8148673	3R_8148673_SNP [dm3] 3R_12322951_SNP [dm6]	T	G	2.825e^-4	0.801	UPSTREAM CG10013 & 1 other INTERGENIC
2R	9763431	2R_9763431_SNP [dm3] 2R_13875926_SNP [dm6]	G	T	2.838e^-4	0.801	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	12374733	3L_12374733_SNP [dm3] 3L_12381633_SNP [dm6]	T	G	2.839e^-4	0.801	INTRON Ncc69	TF binding site mE1_TFBS_inv
3L	11273998	3L_11273998_SNP [dm3] 3L_11280898_SNP [dm6]	C	G	2.840e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10837540	3L_10837540_DEL [dm3] 3L_10844440_DEL [dm6]	TCAAGTGTTTG...	T	2.841e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	935789	2L_935789_SNP [dm3] 2L_935789_SNP [dm6]	G	A	2.842e^-4	0.801	INTRON CG4341	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20423664	2L_20423664_SNP [dm3] 2L_20423664_SNP [dm6]	G	A	2.843e^-4	0.801	DOWNSTREAM Arpc2 INTRON CG15130
2R	14795233	2R_14795233_SNP [dm3] 2R_18907728_SNP [dm6]	T	C	2.845e^-4	0.801	INTRON sano	TF binding site mE1_TFBS_cad
X	15456942	X_15456942_DEL [dm3] X_15562909_DEL [dm6]	AC	A	2.846e^-4	0.801	INTERGENIC
2R	8114438	2R_8114438_SNP [dm3] 2R_12226933_SNP [dm6]	T	C	2.851e^-4	0.801	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3R	26115291	3R_26115291_INS [dm3] 3R_30289569_INS [dm6]	T	TT	2.852e^-4	0.801	INTRON hdc
3L	7467170	3L_7467170_SNP [dm3] 3L_7474070_SNP [dm6]	A	C	2.852e^-4	0.801	INTERGENIC
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	2.855e^-4	0.801	UTR_3_PRIME numb DOWNSTREAM numb
3L	277382	3L_277382_SNP [dm3] 3L_277382_SNP [dm6]	G	C	2.861e^-4	0.801	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15112481	3R_15112481_SNP [dm3] 3R_19286759_SNP [dm6]	T	A	2.863e^-4	0.801	INTERGENIC
3L	7803370	3L_7803370_SNP [dm3] 3L_7810270_SNP [dm6]	T	A	2.873e^-4	0.801	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9346926	2L_9346926_SNP [dm3] 2L_9346926_SNP [dm6]	G	A	2.878e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21705201	3R_21705201_SNP [dm3] 3R_25879479_SNP [dm6]	G	A	2.884e^-4	0.801	INTRON Tsp96F	TF binding site mE1_TFBS_HSA
3L	4352840	3L_4352840_SNP [dm3] 3L_4352840_SNP [dm6]	C	T	2.889e^-4	0.801	INTRON Cip4
2L	4159291	2L_4159291_SNP [dm3] 2L_4159291_SNP [dm6]	C	T	2.889e^-4	0.801	INTERGENIC
2R	9962819	2R_9962819_SNP [dm3] 2R_14075314_SNP [dm6]	C	T	2.895e^-4	0.801	INTRON Prosap
2R	18618338	2R_18618338_SNP [dm3] 2R_22730833_SNP [dm6]	T	C	2.901e^-4	0.801	SYNONYMOUS_CODING jbug
2L	2668763	2L_2668763_SNP [dm3] 2L_2668763_SNP [dm6]	C	T	2.905e^-4	0.801	INTERGENIC
3L	19569957	3L_19569957_SNP [dm3] 3L_19576857_SNP [dm6]	A	G	2.908e^-4	0.801	INTRON Shal
2L	14252115	2L_14252115_SNP [dm3] 2L_14252115_SNP [dm6]	T	C	2.911e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	9348159	2L_9348159_INS [dm3] 2L_9348159_INS [dm6]	A	CGCAGG	2.912e^-4	0.801	DOWNSTREAM CR44802 INTERGENIC
3L	934370	3L_934370_SNP [dm3] 3L_934370_SNP [dm6]	G	A	2.918e^-4	0.801	INTRON Glut1
3R	10803106	3R_10803106_SNP [dm3] 3R_14977384_SNP [dm6]	C	A	2.921e^-4	0.801	INTERGENIC
3L	14134613	3L_14134613_SNP [dm3] 3L_14141513_SNP [dm6]	T	A	2.925e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs
3R	8485688	3R_8485688_SNP [dm3] 3R_12659966_SNP [dm6]	C	T	2.930e^-4	0.801	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
2R	10033080	2R_10033080_SNP [dm3] 2R_14145575_SNP [dm6]	G	C	2.931e^-4	0.801	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
X	16946993	X_16946993_SNP [dm3] X_17052960_SNP [dm6]	T	A	2.932e^-4	0.801	INTRON CG45002
X	18964592	X_18964592_SNP [dm3] X_19070559_SNP [dm6]	T	C	2.934e^-4	0.801	INTERGENIC
X	2776016	X_2776016_SNP [dm3] X_2881983_SNP [dm6]	C	T	2.935e^-4	0.801	DOWNSTREAM CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl
X	17269599	X_17269599_SNP [dm3] X_17375566_SNP [dm6]	A	G	2.939e^-4	0.801	INTERGENIC
3L	18034768	3L_18034768_SNP [dm3] 3L_18041668_SNP [dm6]	C	A	2.942e^-4	0.801	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
2R	18227988	2R_18227988_SNP [dm3] 2R_22340483_SNP [dm6]	T	C	2.956e^-4	0.801	INTRON Liprin-gamma
2R	19579145	2R_19579145_SNP [dm3] 2R_23691622_SNP [dm6]	G	A	2.959e^-4	0.801	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20191666	2R_20191666_SNP [dm3] 2R_24304143_SNP [dm6]	C	A	2.997e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs
2L	17778779	2L_17778779_DEL [dm3] 2L_17778779_DEL [dm6]	CGG	C	2.997e^-4	0.801	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3L	15960157	3L_15960157_SNP [dm3] 3L_15967057_SNP [dm6]	G	A	3.001e^-4	0.801	SYNONYMOUS_CODING l_3_72Ab	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	7011982	2L_7011982_SNP [dm3] 2L_7011982_SNP [dm6]	T	C	3.001e^-4	0.801	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	16710820	X_16710820_INS [dm3] X_16816787_INS [dm6]	T	TTTTTCAATTTCAAAATTCT...	3.003e^-4	0.801	UPSTREAM CG4829 & 1 other INTRON CG4829
2L	20415082	2L_20415082_SNP [dm3] 2L_20415082_SNP [dm6]	T	A	3.004e^-4	0.801	UPSTREAM CG10947 DOWNSTREAM CG10949 INTERGENIC
2R	19413659	2R_19413659_SNP [dm3] 2R_23526136_SNP [dm6]	C	T	3.005e^-4	0.801	SYNONYMOUS_CODING mi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8151848	3R_8151848_SNP [dm3] 3R_12326126_SNP [dm6]	T	G	3.007e^-4	0.801	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9914224	2R_9914224_SNP [dm3] 2R_14026719_SNP [dm6]	A	C	3.010e^-4	0.801	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	14973689	3R_14973689_SNP [dm3] 3R_19147967_SNP [dm6]	A	C	3.019e^-4	0.801	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	1357501	2R_1357501_SNP [dm3] 2R_5469996_SNP [dm6]	C	A	3.022e^-4	0.801	INTRON CG30440	transposable element FlyBase
2R	1379654	2R_1379654_SNP [dm3] 2R_5492149_SNP [dm6]	G	A	3.026e^-4	0.801	INTRON CG30440
X	6126570	X_6126570_SNP [dm3] X_6232537_SNP [dm6]	A	T	3.028e^-4	0.801	UTR_3_PRIME CG14446
2L	7014824	2L_7014824_SNP [dm3] 2L_7014824_SNP [dm6]	T	A	3.029e^-4	0.801	UTR_3_PRIME ade3 DOWNSTREAM ade3 & 1 other
2L	4994500	2L_4994500_SNP [dm3] 2L_4994500_SNP [dm6]	C	T	3.035e^-4	0.801	SPLICE_SITE_REGION Rtnl1 INTRON Rtnl1
2L	13971713	2L_13971713_SNP [dm3] 2L_13971713_SNP [dm6]	G	C	3.036e^-4	0.801	DOWNSTREAM He INTRON NimB5	TF binding site mE1_TFBS_cad
3R	13604889	3R_13604889_SNP [dm3] 3R_17779167_SNP [dm6]	A	T	3.052e^-4	0.801	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
X	17095466	X_17095466_SNP [dm3] X_17201433_SNP [dm6]	A	G	3.059e^-4	0.801	DOWNSTREAM baz INTRON CG8918
3R	17692876	3R_17692876_SNP [dm3] 3R_21867154_SNP [dm6]	C	T	3.060e^-4	0.801	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
X	3243348	X_3243348_SNP [dm3] X_3349315_SNP [dm6]	C	T	3.061e^-4	0.801	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12374717	3L_12374717_SNP [dm3] 3L_12381617_SNP [dm6]	A	T	3.061e^-4	0.801	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	9862304	2L_9862304_INS [dm3] 2L_9862304_INS [dm6]	A	AGCAATTAA	3.068e^-4	0.801	INTRON nAChRalpha6
3R	26869106	3R_26869106_SNP [dm3] 3R_31043384_SNP [dm6]	C	T	3.068e^-4	0.801	SPLICE_SITE_REGION CanA1 INTRON CanA1
2L	5489809	2L_5489809_SNP [dm3] 2L_5489809_SNP [dm6]	G	C	3.069e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7803399	3L_7803399_SNP [dm3] 3L_7810299_SNP [dm6]	G	C	3.074e^-4	0.801	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17973896	3R_17973896_SNP [dm3] 3R_22148174_SNP [dm6]	A	G	3.077e^-4	0.801	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	12283294	3L_12283294_SNP [dm3] 3L_12290194_SNP [dm6]	G	A	3.082e^-4	0.801	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	16758873	X_16758873_SNP [dm3] X_16864840_SNP [dm6]	T	C	3.088e^-4	0.801	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	26592602	3R_26592602_SNP [dm3] 3R_30766880_SNP [dm6]	G	A	3.091e^-4	0.801	INTRON zfh1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	841897	3L_841897_SNP [dm3] 3L_841897_SNP [dm6]	T	C	3.092e^-4	0.801	UPSTREAM CG13902 INTRON Gr61a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8485643	3R_8485643_SNP [dm3] 3R_12659921_SNP [dm6]	T	A	3.097e^-4	0.801	INTRON CG6225	TF binding site mE1_TFBS_cad
3L	10837525	3L_10837525_SNP [dm3] 3L_10844425_SNP [dm6]	A	T	3.098e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8875508	3R_8875508_SNP [dm3] 3R_13049786_SNP [dm6]	G	C	3.098e^-4	0.801	SYNONYMOUS_CODING CG7966 DOWNSTREAM CG31157
3L	16811948	3L_16811948_SNP [dm3] 3L_16818848_SNP [dm6]	T	C	3.106e^-4	0.801	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7266444	3L_7266444_SNP [dm3] 3L_7273344_SNP [dm6]	G	T	3.107e^-4	0.801	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3R	4309239	3R_4309239_SNP [dm3] 3R_8483517_SNP [dm6]	T	A	3.109e^-4	0.801	INTERGENIC
2L	10572944	2L_10572944_SNP [dm3] 2L_10572944_SNP [dm6]	C	T	3.110e^-4	0.801	INTRON Trim9
2R	10023555	2R_10023555_DEL [dm3] 2R_14136050_DEL [dm6]	TT	T	3.120e^-4	0.801	INTRON Prosap
2R	9184100	2R_9184100_SNP [dm3] 2R_13296595_SNP [dm6]	T	A	3.125e^-4	0.801	UPSTREAM Dh31-R DOWNSTREAM CG4734 INTERGENIC
3L	14134535	3L_14134535_SNP [dm3] 3L_14141435_SNP [dm6]	T	A	3.125e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15225775	2L_15225775_SNP [dm3] 2L_15225775_SNP [dm6]	T	C	3.125e^-4	0.801	INTERGENIC
3L	19018051	3L_19018051_INS [dm3] 3L_19024951_INS [dm6]	A	AA	3.127e^-4	0.801	INTRON nkd
2L	844185	2L_844185_SNP [dm3] 2L_844185_SNP [dm6]	T	A	3.129e^-4	0.801	INTRON drongo
3R	17246901	3R_17246901_SNP [dm3] 3R_21421179_SNP [dm6]	C	T	3.140e^-4	0.802	INTRON lbl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9971614	2R_9971614_SNP [dm3] 2R_14084109_SNP [dm6]	C	T	3.143e^-4	0.802	INTRON Prosap
X	4236958	X_4236958_SNP [dm3] X_4342925_SNP [dm6]	C	T	3.146e^-4	0.802	INTRON norpA
3R	21710535	3R_21710535_SNP [dm3] 3R_25884813_SNP [dm6]	A	C	3.150e^-4	0.802	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12269423	3L_12269423_SNP [dm3] 3L_12276323_SNP [dm6]	T	G	3.154e^-4	0.802	INTRON CG4300	TF binding site BDTNP1_TFBS_dl
3L	11766687	3L_11766687_SNP [dm3] 3L_11773587_SNP [dm6]	C	A	3.169e^-4	0.802	DOWNSTREAM mir-956 & 2 others INTERGENIC
3R	15968569	3R_15968569_SNP [dm3] 3R_20142847_SNP [dm6]	C	T	3.171e^-4	0.802	INTERGENIC
2R	8607330	2R_8607330_SNP [dm3] 2R_12719825_SNP [dm6]	T	C	3.183e^-4	0.802	INTRON CG42663
2L	18814290	2L_18814290_SNP [dm3] 2L_18814290_SNP [dm6]	C	T	3.185e^-4	0.802	DOWNSTREAM CG17325 & 1 other INTERGENIC
3L	17149989	3L_17149989_SNP [dm3] 3L_17156889_SNP [dm6]	T	C	3.186e^-4	0.802	INTRON Rbp6
2R	9166500	2R_9166500_INS [dm3] 2R_13278995_INS [dm6]	A	AA	3.186e^-4	0.802	INTRON Dh31-R
2L	7776180	2L_7776180_SNP [dm3] 2L_7776180_SNP [dm6]	G	A	3.188e^-4	0.802	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
3L	13225296	3L_13225296_SNP [dm3] 3L_13232196_SNP [dm6]	A	T	3.198e^-4	0.802	INTRON caps
3L	13209912	3L_13209912_SNP [dm3] 3L_13216812_SNP [dm6]	A	G	3.201e^-4	0.802	EXON CR43914	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7803401	3L_7803401_SNP [dm3] 3L_7810301_SNP [dm6]	T	C	3.201e^-4	0.802	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19600120	2R_19600120_SNP [dm3] 2R_23712597_SNP [dm6]	T	C	3.202e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8175841	2R_8175841_SNP [dm3] 2R_12288336_SNP [dm6]	T	A	3.217e^-4	0.804	INTRON CG42700
2L	20415841	2L_20415841_SNP [dm3] 2L_20415841_SNP [dm6]	G	A	3.220e^-4	0.804	SYNONYMOUS_CODING CG10949	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8790386	2L_8790386_SNP [dm3] 2L_8790386_SNP [dm6]	C	T	3.226e^-4	0.804	INTERGENIC
2L	3668129	2L_3668129_SNP [dm3] 2L_3668129_SNP [dm6]	T	C	3.229e^-4	0.804	NON_SYNONYMOUS_CODING Sfp24Ba DOWNSTREAM CG42463 INTRON CG34340
3L	11766632	3L_11766632_SNP [dm3] 3L_11773532_SNP [dm6]	C	A	3.239e^-4	0.806	DOWNSTREAM mir-956 & 2 others INTERGENIC
2R	10026662	2R_10026662_SNP [dm3] 2R_14139157_SNP [dm6]	C	T	3.253e^-4	0.807	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21995407	3R_21995407_SNP [dm3] 3R_26169685_SNP [dm6]	G	C	3.254e^-4	0.807	INTERGENIC
3R	21226958	3R_21226958_SNP [dm3] 3R_25401236_SNP [dm6]	G	A	3.262e^-4	0.807	UPSTREAM Muc96D INTRON Fur1
3L	6388950	3L_6388950_SNP [dm3] 3L_6395850_SNP [dm6]	G	A	3.263e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1301453	2R_1301453_SNP [dm3] 2R_5413948_SNP [dm6]	A	G	3.270e^-4	0.807	UTR_5_PRIME laccase2
X	16947000	X_16947000_SNP [dm3] X_17052967_SNP [dm6]	T	C	3.278e^-4	0.807	INTRON CG45002
2R	7295641	2R_7295641_SNP [dm3] 2R_11408136_SNP [dm6]	A	T	3.278e^-4	0.807	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	8071278	3R_8071278_SNP [dm3] 3R_12245556_SNP [dm6]	G	C	3.288e^-4	0.807	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7760307	3R_7760307_SNP [dm3] 3R_11934585_SNP [dm6]	G	A	3.288e^-4	0.807	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	1353252	2R_1353252_SNP [dm3] 2R_5465747_SNP [dm6]	A	G	3.292e^-4	0.807	INTERGENIC	transposable element FlyBase
2R	12071063	2R_12071063_SNP [dm3] 2R_16183558_SNP [dm6]	G	C	3.293e^-4	0.807	INTRON Lis-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6230497	2R_6230497_SNP [dm3] 2R_10342992_SNP [dm6]	A	C	3.295e^-4	0.807	INTRON CG42732
3L	14134530	3L_14134530_SNP [dm3] 3L_14141430_SNP [dm6]	G	T	3.306e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	8485642	3R_8485642_SNP [dm3] 3R_12659920_SNP [dm6]	C	A	3.309e^-4	0.807	INTRON CG6225	TF binding site mE1_TFBS_cad
3R	15025207	3R_15025207_SNP [dm3] 3R_19199485_SNP [dm6]	G	A	3.314e^-4	0.807	INTRON CG31475
2L	4897500	2L_4897500_SNP [dm3] 2L_4897500_SNP [dm6]	T	G	3.328e^-4	0.807	INTRON CG3036	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6128016	X_6128016_SNP [dm3] X_6233983_SNP [dm6]	C	T	3.330e^-4	0.807	UTR_3_PRIME CG14446 DOWNSTREAM CG14446
X	16760693	X_16760693_INS [dm3] X_16866660_INS [dm6]	T	TTCCTTT	3.340e^-4	0.807	INTRON CG13003
3L	6838832	3L_6838832_SNP [dm3] 3L_6845732_SNP [dm6]	C	T	3.342e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	21457546	X_21457546_SNP [dm3] X_21586519_SNP [dm6]	C	G	3.347e^-4	0.807	INTERGENIC
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	3.348e^-4	0.807	INTRON Liprin-gamma
3R	3007748	3R_3007748_SNP [dm3] 3R_7182026_SNP [dm6]	A	C	3.350e^-4	0.807	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10024163	2R_10024163_SNP [dm3] 2R_14136658_SNP [dm6]	C	A	3.368e^-4	0.807	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11365371	3L_11365371_SNP [dm3] 3L_11372271_SNP [dm6]	A	C	3.374e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	7581609	2L_7581609_SNP [dm3] 2L_7581609_SNP [dm6]	A	T	3.376e^-4	0.807	UPSTREAM Spn28B INTERGENIC
3R	11652848	3R_11652848_SNP [dm3] 3R_15827126_SNP [dm6]	T	G	3.379e^-4	0.807	SYNONYMOUS_CODING CG4576 INTRON rec
2R	7127560	2R_7127560_SNP [dm3] 2R_11240055_SNP [dm6]	G	T	3.396e^-4	0.807	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
2R	18907642	2R_18907642_SNP [dm3] 2R_23020119_SNP [dm6]	G	A	3.398e^-4	0.807	INTRON twi & 1 other
2L	7011372	2L_7011372_SNP [dm3] 2L_7011372_SNP [dm6]	G	A	3.406e^-4	0.807	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	894112	2L_894112_SNP [dm3] 2L_894112_SNP [dm6]	A	C	3.416e^-4	0.807	INTERGENIC
X	11588152	X_11588152_SNP [dm3] X_11694119_SNP [dm6]	A	T	3.417e^-4	0.807	UTR_3_PRIME bif	TF binding site BDTNP1_TFBS_dl
2L	4892570	2L_4892570_SNP [dm3] 2L_4892570_SNP [dm6]	A	G	3.418e^-4	0.807	UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12811399	2R_12811399_SNP [dm3] 2R_16923894_SNP [dm6]	C	T	3.424e^-4	0.807	UPSTREAM Pkc53E INTERGENIC
3R	27066173	3R_27066173_DEL [dm3] 3R_31240451_DEL [dm6]	GTG	G	3.424e^-4	0.807	INTRON qless
2L	7615894	2L_7615894_SNP [dm3] 2L_7615894_SNP [dm6]	T	C	3.427e^-4	0.807	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2L	18805390	2L_18805390_SNP [dm3] 2L_18805390_SNP [dm6]	G	A	3.432e^-4	0.807	UPSTREAM CG43814 DOWNSTREAM CR43817 INTERGENIC
2L	17778656	2L_17778656_DEL [dm3] 2L_17778656_DEL [dm6]	GATAT	G	3.437e^-4	0.807	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18572580	2R_18572580_SNP [dm3] 2R_22685075_SNP [dm6]	G	A	3.439e^-4	0.807	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14925225	2R_14925225_SNP [dm3] 2R_19037720_SNP [dm6]	A	G	3.444e^-4	0.807	INTERGENIC
3R	9757304	3R_9757304_SNP [dm3] 3R_13931582_SNP [dm6]	T	G	3.454e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14973644	3R_14973644_SNP [dm3] 3R_19147922_SNP [dm6]	T	G	3.455e^-4	0.807	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	11873379	X_11873379_SNP [dm3] X_11979346_SNP [dm6]	A	T	3.455e^-4	0.807	INTRON cac
2R	13154771	2R_13154771_SNP [dm3] 2R_17267266_SNP [dm6]	T	G	3.458e^-4	0.807	INTRON mbl
3R	9781807	3R_9781807_SNP [dm3] 3R_13956085_SNP [dm6]	A	C	3.464e^-4	0.807	INTERGENIC
X	21428296	X_21428296_SNP [dm3] X_21557269_SNP [dm6]	G	A	3.465e^-4	0.807	INTERGENIC
3L	6388942	3L_6388942_SNP [dm3] 3L_6395842_SNP [dm6]	G	A	3.466e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12145321	2R_12145321_SNP [dm3] 2R_16257816_SNP [dm6]	T	A	3.468e^-4	0.807	INTRON CngA
2R	10154093	2R_10154093_SNP [dm3] 2R_14266588_SNP [dm6]	G	C	3.478e^-4	0.807	INTRON CG8547
2R	19602197	2R_19602197_DEL [dm3] 2R_23714674_DEL [dm6]	TC	T	3.478e^-4	0.807	SPLICE_SITE_REGION Sesn UTR_5_PRIME Sesn INTRON Sesn
3L	14386551	3L_14386551_SNP [dm3] 3L_14393451_SNP [dm6]	A	T	3.485e^-4	0.807	INTERGENIC
2R	7030375	2R_7030375_SNP [dm3] 2R_11142870_SNP [dm6]	G	A	3.495e^-4	0.807	SYNONYMOUS_CODING CG13229
3R	17735688	3R_17735688_SNP [dm3] 3R_21909966_SNP [dm6]	A	T	3.497e^-4	0.807	INTERGENIC
2R	9914303	2R_9914303_INS [dm3] 2R_14026798_INS [dm6]	A	AGCAATT	3.499e^-4	0.807	INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	12579390	3R_12579390_SNP [dm3] 3R_16753668_SNP [dm6]	G	T	3.501e^-4	0.807	INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5425765	2L_5425765_SNP [dm3] 2L_5425765_SNP [dm6]	G	A	3.509e^-4	0.807	INTERGENIC
3L	7447890	3L_7447890_SNP [dm3] 3L_7454790_SNP [dm6]	G	C	3.511e^-4	0.807	DOWNSTREAM CG42458 INTERGENIC
2R	14925202	2R_14925202_SNP [dm3] 2R_19037697_SNP [dm6]	A	G	3.512e^-4	0.807	INTERGENIC
2R	14925206	2R_14925206_SNP [dm3] 2R_19037701_SNP [dm6]	G	T	3.515e^-4	0.807	INTERGENIC
X	14137801	X_14137801_DEL [dm3] X_14243768_DEL [dm6]	TT	T	3.519e^-4	0.807	UTR_5_PRIME CG32599 UPSTREAM mRNA-cap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	13111557	X_13111557_SNP [dm3] X_13217524_SNP [dm6]	C	A	3.524e^-4	0.807	NON_SYNONYMOUS_CODING mew	TF binding site mE1_TFBS_sens
3R	26490440	3R_26490440_SNP [dm3] 3R_30664718_SNP [dm6]	A	G	3.524e^-4	0.807	UPSTREAM CR45191 INTERGENIC
2L	4162065	2L_4162065_SNP [dm3] 2L_4162065_SNP [dm6]	C	T	3.526e^-4	0.807	INTERGENIC
3R	22777776	3R_22777776_SNP [dm3] 3R_26952054_SNP [dm6]	C	T	3.527e^-4	0.807	INTRON CG6330
X	4631876	X_4631876_SNP [dm3] X_4737843_SNP [dm6]	A	C	3.529e^-4	0.807	INTERGENIC
3L	1360899	3L_1360899_SNP [dm3] 3L_1360899_SNP [dm6]	A	G	3.530e^-4	0.807	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	4400300	X_4400300_SNP [dm3] X_4506267_SNP [dm6]	G	T	3.535e^-4	0.807	INTRON CR32773
2R	3863685	2R_3863685_SNP [dm3] 2R_7976180_SNP [dm6]	A	G	3.549e^-4	0.807	SPLICE_SITE_REGION ACC INTRON ACC	TF binding site mE1_TFBS_cad
2R	9914259	2R_9914259_SNP [dm3] 2R_14026754_SNP [dm6]	A	T	3.549e^-4	0.807	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	7843438	2L_7843438_SNP [dm3] 2L_7843438_SNP [dm6]	T	C	3.550e^-4	0.807	INTERGENIC
2L	9079138	2L_9079138_SNP [dm3] 2L_9079138_SNP [dm6]	T	G	3.550e^-4	0.807	INTERGENIC
2R	8937081	2R_8937081_SNP [dm3] 2R_13049576_SNP [dm6]	G	A	3.552e^-4	0.807	NON_SYNONYMOUS_CODING CG13324
2L	1932958	2L_1932958_SNP [dm3] 2L_1932958_SNP [dm6]	G	T	3.559e^-4	0.807	INTRON CG7337
2L	16402700	2L_16402700_SNP [dm3] 2L_16402700_SNP [dm6]	A	T	3.571e^-4	0.807	INTRON CG5888
2L	5917082	2L_5917082_SNP [dm3] 2L_5917082_SNP [dm6]	G	A	3.572e^-4	0.807	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5809265	X_5809265_SNP [dm3] X_5915232_SNP [dm6]	G	A	3.573e^-4	0.807	UTR_5_PRIME CG3011 DOWNSTREAM CR44108 INTRON CG3011
3L	2346288	3L_2346288_SNP [dm3] 3L_2346288_SNP [dm6]	C	T	3.579e^-4	0.807	DOWNSTREAM MsR1 INTERGENIC
2R	12091150	2R_12091150_SNP [dm3] 2R_16203645_SNP [dm6]	T	A	3.579e^-4	0.807	UTR_3_PRIME mrj UPSTREAM shark
3R	18104842	3R_18104842_SNP [dm3] 3R_22279120_SNP [dm6]	C	T	3.581e^-4	0.807	INTRON SKIP
X	10041749	X_10041749_SNP [dm3] X_10147716_SNP [dm6]	A	C	3.587e^-4	0.808	INTRON CR44894 & 1 other
3R	18229505	3R_18229505_SNP [dm3] 3R_22403783_SNP [dm6]	T	A	3.607e^-4	0.811	INTRON CG13856
3R	12762406	3R_12762406_SNP [dm3] 3R_16936684_SNP [dm6]	A	C	3.614e^-4	0.812	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10033073	2R_10033073_SNP [dm3] 2R_14145568_SNP [dm6]	C	T	3.631e^-4	0.814	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	4776580	2L_4776580_SNP [dm3] 2L_4776580_SNP [dm6]	C	G	3.631e^-4	0.814	INTRON CG15630
3R	26931589	3R_26931589_SNP [dm3] 3R_31105867_SNP [dm6]	G	C	3.636e^-4	0.814	DOWNSTREAM CG11318 INTERGENIC
3R	163239	3R_163239_SNP [dm3] 3R_4337517_SNP [dm6]	G	A	3.644e^-4	0.814	UPSTREAM CG1103 INTRON Skp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2744272	3L_2744272_SNP [dm3] 3L_2744272_SNP [dm6]	C	G	3.645e^-4	0.814	INTRON Mrtf
3R	20807123	3R_20807123_SNP [dm3] 3R_24981401_SNP [dm6]	G	A	3.653e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	16810422	3L_16810422_SNP [dm3] 3L_16817322_SNP [dm6]	T	G	3.655e^-4	0.814	INTRON nudC & 1 other
X	8100504	X_8100504_SNP [dm3] X_8206471_SNP [dm6]	A	T	3.659e^-4	0.814	INTRON sdt
2L	19316076	2L_19316076_SNP [dm3] 2L_19316076_SNP [dm6]	T	A	3.666e^-4	0.815	INTERGENIC
2L	10320784	2L_10320784_SNP [dm3] 2L_10320784_SNP [dm6]	C	T	3.672e^-4	0.815	INTRON CG5381
3R	21859853	3R_21859853_SNP [dm3] 3R_26034131_SNP [dm6]	T	C	3.689e^-4	0.817	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	19316069	2L_19316069_SNP [dm3] 2L_19316069_SNP [dm6]	T	A	3.697e^-4	0.817	INTERGENIC
2R	19578680	2R_19578680_SNP [dm3] 2R_23691157_SNP [dm6]	A	G	3.697e^-4	0.817	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad
3L	9725571	3L_9725571_SNP [dm3] 3L_9732471_SNP [dm6]	T	C	3.706e^-4	0.817	INTRON CG6749	TF binding site mE1_TFBS_cad
2L	1138085	2L_1138085_SNP [dm3] 2L_1138085_SNP [dm6]	A	T	3.710e^-4	0.817	INTRON CG4577
3R	2024419	3R_2024419_SNP [dm3] 3R_6198697_SNP [dm6]	C	T	3.712e^-4	0.817	UPSTREAM Osi24 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15735483	2R_15735483_SNP [dm3] 2R_19847978_SNP [dm6]	G	A	3.713e^-4	0.817	INTERGENIC
2R	19573583	2R_19573583_INS [dm3] 2R_23686060_INS [dm6]	T	TCCT	3.727e^-4	0.818	UPSTREAM l_2_efl INTRON St3
3L	13225309	3L_13225309_SNP [dm3] 3L_13232209_SNP [dm6]	C	A	3.728e^-4	0.818	INTRON caps
3R	8485591	3R_8485591_SNP [dm3] 3R_12659869_SNP [dm6]	A	G	3.736e^-4	0.818	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
2L	5718980	2L_5718980_SNP [dm3] 2L_5718980_SNP [dm6]	T	C	3.738e^-4	0.818	SYNONYMOUS_CODING CG11149 DOWNSTREAM CG34011	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15389262	2L_15389262_SNP [dm3] 2L_15389262_SNP [dm6]	C	T	3.740e^-4	0.818	INTERGENIC
2R	18978735	2R_18978735_SNP [dm3] 2R_23091212_SNP [dm6]	T	G	3.744e^-4	0.818	INTRON CG9876	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	13958194	3L_13958194_SNP [dm3] 3L_13965094_SNP [dm6]	G	T	3.757e^-4	0.819	UPSTREAM ssp2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3L	1422547	3L_1422547_SNP [dm3] 3L_1422547_SNP [dm6]	T	C	3.764e^-4	0.819	SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16811956	3L_16811956_SNP [dm3] 3L_16818856_SNP [dm6]	T	G	3.766e^-4	0.819	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9363973	3L_9363973_SNP [dm3] 3L_9370873_SNP [dm6]	A	C	3.767e^-4	0.819	DOWNSTREAM CG4452 & 1 other INTRON Fdxh
X	2375229	X_2375229_SNP [dm3] X_2481196_SNP [dm6]	T	C	3.769e^-4	0.819	SYNONYMOUS_CODING trol
3L	12494005	3L_12494005_SNP [dm3] 3L_12500905_SNP [dm6]	C	T	3.780e^-4	0.819	SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
3L	304051	3L_304051_SNP [dm3] 3L_304051_SNP [dm6]	G	A	3.789e^-4	0.819	UTR_3_PRIME RhoGEF3 DOWNSTREAM RhoGEF3	TF binding site mE1_TFBS_zfh1
2L	12087395	2L_12087395_SNP [dm3] 2L_12087395_SNP [dm6]	T	A	3.789e^-4	0.819	DOWNSTREAM CR44592 EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	16364638	2R_16364638_SNP [dm3] 2R_20477133_SNP [dm6]	A	C	3.790e^-4	0.819	INTRON CG12484
3R	26760773	3R_26760773_SNP [dm3] 3R_30935051_SNP [dm6]	C	T	3.801e^-4	0.819	DOWNSTREAM CG15549 INTERGENIC
3R	26652506	3R_26652506_SNP [dm3] 3R_30826784_SNP [dm6]	G	A	3.801e^-4	0.819	UTR_3_PRIME cindr DOWNSTREAM cindr
2L	5278895	2L_5278895_SNP [dm3] 2L_5278895_SNP [dm6]	G	C	3.812e^-4	0.819	UTR_5_PRIME Bub1 UPSTREAM Bub1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	4163618	2L_4163618_SNP [dm3] 2L_4163618_SNP [dm6]	T	A	3.812e^-4	0.819	INTERGENIC
2L	4278858	2L_4278858_SNP [dm3] 2L_4278858_SNP [dm6]	T	C	3.819e^-4	0.819	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
2R	11797580	2R_11797580_SNP [dm3] 2R_15910075_SNP [dm6]	T	G	3.840e^-4	0.819	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18909663	2R_18909663_SNP [dm3] 2R_23022140_SNP [dm6]	T	C	3.848e^-4	0.819	INTRON twi & 1 other
3R	4326804	3R_4326804_SNP [dm3] 3R_8501082_SNP [dm6]	A	T	3.856e^-4	0.819	INTERGENIC
3L	11577499	3L_11577499_SNP [dm3] 3L_11584399_SNP [dm6]	A	G	3.873e^-4	0.819	SYNONYMOUS_CODING rt UPSTREAM CG32086	TF binding site mE1_TFBS_cad
2L	9830863	2L_9830863_SNP [dm3] 2L_9830863_SNP [dm6]	C	A	3.875e^-4	0.819	INTRON nAChRalpha6
2R	13542538	2R_13542538_SNP [dm3] 2R_17655033_SNP [dm6]	T	C	3.880e^-4	0.819	INTRON CCHa1-R
2R	15571285	2R_15571285_SNP [dm3] 2R_19683780_SNP [dm6]	A	G	3.882e^-4	0.819	UPSTREAM CG34198 EXON CR44505
2R	13025200	2R_13025200_SNP [dm3] 2R_17137695_SNP [dm6]	A	G	3.882e^-4	0.819	SYNONYMOUS_CODING CG11395 DOWNSTREAM Gbp
2R	6051098	2R_6051098_SNP [dm3] 2R_10163593_SNP [dm6]	A	T	3.888e^-4	0.819	INTRON KCNQ
3L	12922805	3L_12922805_SNP [dm3] 3L_12929705_SNP [dm6]	T	G	3.891e^-4	0.819	INTERGENIC
2R	18618874	2R_18618874_SNP [dm3] 2R_22731369_SNP [dm6]	C	T	3.899e^-4	0.819	SYNONYMOUS_CODING jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9200040	2L_9200040_DEL [dm3] 2L_9200040_DEL [dm6]	CA	G	3.906e^-4	0.819	INTRON tai
2R	18910225	2R_18910225_SNP [dm3] 2R_23022702_SNP [dm6]	T	A	3.917e^-4	0.819	INTRON twi & 1 other
2R	14676253	2R_14676253_SNP [dm3] 2R_18788748_SNP [dm6]	C	T	3.917e^-4	0.819	INTRON CG15080
3R	22447533	3R_22447533_SNP [dm3] 3R_26621811_SNP [dm6]	T	C	3.922e^-4	0.819	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3L	14330296	3L_14330296_SNP [dm3] 3L_14337196_SNP [dm6]	A	C	3.923e^-4	0.819	INTRON fz
2R	9796388	2R_9796388_SNP [dm3] 2R_13908883_SNP [dm6]	C	G	3.944e^-4	0.819	INTRON shot
2R	9796405	2R_9796405_SNP [dm3] 2R_13908900_SNP [dm6]	C	T	3.944e^-4	0.819	INTRON shot
3R	15821046	3R_15821046_SNP [dm3] 3R_19995324_SNP [dm6]	T	C	3.948e^-4	0.819	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12178798	3L_12178798_SNP [dm3] 3L_12185698_SNP [dm6]	G	A	3.948e^-4	0.819	UPSTREAM CG6910 INTRON CG6910
2L	7843462	2L_7843462_SNP [dm3] 2L_7843462_SNP [dm6]	A	C	3.954e^-4	0.819	INTERGENIC
3R	26176018	3R_26176018_SNP [dm3] 3R_30350296_SNP [dm6]	C	A	3.960e^-4	0.819	INTRON hdc
X	1219925	X_1219925_SNP [dm3] X_1325892_SNP [dm6]	T	G	3.962e^-4	0.819	NON_SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
2R	14675915	2R_14675915_SNP [dm3] 2R_18788410_SNP [dm6]	T	A	3.964e^-4	0.819	INTRON CG15080
2R	9557912	2R_9557912_SNP [dm3] 2R_13670407_SNP [dm6]	G	A	3.968e^-4	0.819	SYNONYMOUS_CODING CG18368 INTRON fas
3L	4840543	3L_4840543_SNP [dm3] 3L_4840543_SNP [dm6]	A	T	3.972e^-4	0.819	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	21457549	X_21457549_SNP [dm3] X_21586522_SNP [dm6]	G	A	3.976e^-4	0.819	INTERGENIC
2R	14925369	2R_14925369_SNP [dm3] 2R_19037864_SNP [dm6]	C	A	3.980e^-4	0.819	INTERGENIC
2R	6546014	2R_6546014_SNP [dm3] 2R_10658509_SNP [dm6]	C	A	3.981e^-4	0.819	UPSTREAM CR44452 INTERGENIC
2R	20201879	2R_20201879_SNP [dm3] 2R_24314356_SNP [dm6]	T	C	3.995e^-4	0.819	INTERGENIC
2L	17300403	2L_17300403_SNP [dm3] 2L_17300403_SNP [dm6]	A	T	3.995e^-4	0.819	INTERGENIC
2R	18905184	2R_18905184_SNP [dm3] 2R_23017661_SNP [dm6]	G	A	3.997e^-4	0.819	INTRON twi & 1 other
2R	14459714	2R_14459714_SNP [dm3] 2R_18572209_SNP [dm6]	T	C	3.997e^-4	0.819	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17002143	2R_17002143_SNP [dm3] 2R_21114638_SNP [dm6]	A	C	4.001e^-4	0.819	INTRON ktub
2L	5276789	2L_5276789_DEL [dm3] 2L_5276789_DEL [dm6]	TTTGTTTGCTTTGGT...	T	4.003e^-4	0.819	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19319746	3L_19319746_SNP [dm3] 3L_19326646_SNP [dm6]	G	T	4.010e^-4	0.819	INTRON pip
2R	16093098	2R_16093098_SNP [dm3] 2R_20205593_SNP [dm6]	G	C	4.016e^-4	0.819	INTERGENIC
2R	17470431	2R_17470431_SNP [dm3] 2R_21582926_SNP [dm6]	A	T	4.021e^-4	0.819	UPSTREAM CG30222 INTERGENIC
3L	11146887	3L_11146887_SNP [dm3] 3L_11153787_SNP [dm6]	C	T	4.034e^-4	0.819	INTRON CG32082
3R	249922	3R_249922_SNP [dm3] 3R_4424200_SNP [dm6]	C	T	4.034e^-4	0.819	NON_SYNONYMOUS_CODING srl
2L	9358957	2L_9358957_SNP [dm3] 2L_9358957_SNP [dm6]	C	T	4.035e^-4	0.819	INTERGENIC
2R	10018139	2R_10018139_SNP [dm3] 2R_14130634_SNP [dm6]	T	A	4.035e^-4	0.819	INTRON Prosap
X	20605589	X_20605589_SNP [dm3] X_20734562_SNP [dm6]	G	A	4.038e^-4	0.819	UTR_3_PRIME CG1324 DOWNSTREAM CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5062617	3L_5062617_SNP [dm3] 3L_5062617_SNP [dm6]	C	A	4.047e^-4	0.819	INTRON Con
3L	9898964	3L_9898964_SNP [dm3] 3L_9905864_SNP [dm6]	C	G	4.052e^-4	0.819	INTERGENIC
2R	10030431	2R_10030431_SNP [dm3] 2R_14142926_SNP [dm6]	G	A	4.062e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3377729	2L_3377729_SNP [dm3] 2L_3377729_SNP [dm6]	C	A	4.069e^-4	0.819	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2R	12109641	2R_12109641_SNP [dm3] 2R_16222136_SNP [dm6]	T	C	4.070e^-4	0.819	UTR_3_PRIME CG7798 UPSTREAM mrj INTRON CR43898	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17649120	2R_17649120_INS [dm3] 2R_21761615_INS [dm6]	T	TGG	4.075e^-4	0.819	INTERGENIC
3R	26048450	3R_26048450_SNP [dm3] 3R_30222728_SNP [dm6]	C	G	4.078e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7581602	2L_7581602_SNP [dm3] 2L_7581602_SNP [dm6]	G	A	4.087e^-4	0.819	UPSTREAM Spn28B INTERGENIC
2R	12849636	2R_12849636_SNP [dm3] 2R_16962131_SNP [dm6]	C	T	4.088e^-4	0.819	INTERGENIC
2L	7843574	2L_7843574_SNP [dm3] 2L_7843574_SNP [dm6]	G	A	4.097e^-4	0.819	INTERGENIC
X	20611945	X_20611945_SNP [dm3] X_20740918_SNP [dm6]	A	T	4.103e^-4	0.819	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12374713	3L_12374713_SNP [dm3] 3L_12381613_SNP [dm6]	A	C	4.103e^-4	0.819	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	7244358	2R_7244358_SNP [dm3] 2R_11356853_SNP [dm6]	T	C	4.104e^-4	0.819	SYNONYMOUS_CODING iotaTry UPSTREAM CG13202 DOWNSTREAM deltaTry & 1 other	TF binding site mE1_TFBS_sens
2R	15225273	2R_15225273_SNP [dm3] 2R_19337768_SNP [dm6]	G	C	4.119e^-4	0.819	INTRON Rgk1
2R	14979736	2R_14979736_SNP [dm3] 2R_19092231_SNP [dm6]	A	G	4.119e^-4	0.819	INTRON 5-HT1A	insulator Insulator_Class_II.mE01
2L	6410670	2L_6410670_SNP [dm3] 2L_6410670_SNP [dm6]	T	C	4.122e^-4	0.819	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4776826	2L_4776826_SNP [dm3] 2L_4776826_SNP [dm6]	G	C	4.123e^-4	0.819	INTRON CG15630
2L	4365237	2L_4365237_SNP [dm3] 2L_4365237_SNP [dm6]	A	C	4.126e^-4	0.819	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	19579160	2R_19579160_SNP [dm3] 2R_23691637_SNP [dm6]	T	C	4.134e^-4	0.819	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10030337	2R_10030337_SNP [dm3] 2R_14142832_SNP [dm6]	C	A	4.145e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	12384519	3L_12384519_SNP [dm3] 3L_12391419_SNP [dm6]	T	G	4.148e^-4	0.819	UTR_5_PRIME Ncc69	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14330327	3L_14330327_SNP [dm3] 3L_14337227_SNP [dm6]	G	C	4.162e^-4	0.819	INTRON fz
2L	8427243	2L_8427243_SNP [dm3] 2L_8427243_SNP [dm6]	T	C	4.162e^-4	0.819	NON_SYNONYMOUS_CODING Akap200	TF binding site mE1_TFBS_cad
2L	17778607	2L_17778607_SNP [dm3] 2L_17778607_SNP [dm6]	T	A	4.168e^-4	0.819	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3776762	3L_3776762_SNP [dm3] 3L_3776762_SNP [dm6]	C	T	4.169e^-4	0.819	INTRON CG32264
2L	5713258	2L_5713258_SNP [dm3] 2L_5713258_SNP [dm6]	C	T	4.175e^-4	0.819	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	4.180e^-4	0.819	INTRON Hnf4 & 1 other
2L	4159244	2L_4159244_SNP [dm3] 2L_4159244_SNP [dm6]	G	T	4.186e^-4	0.819	INTERGENIC
3R	18636393	3R_18636393_SNP [dm3] 3R_22810671_SNP [dm6]	T	C	4.189e^-4	0.819	INTERGENIC
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	4.194e^-4	0.819	INTRON CR44833	regulatory region REDfly_CRMs
2L	7986113	2L_7986113_SNP [dm3] 2L_7986113_SNP [dm6]	T	C	4.197e^-4	0.819	DOWNSTREAM pes INTRON CG7231	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1600139	3L_1600139_SNP [dm3] 3L_1600139_SNP [dm6]	G	A	4.203e^-4	0.819	UTR_3_PRIME CG13917 DOWNSTREAM CG12104
2R	6793091	2R_6793091_SNP [dm3] 2R_10905586_SNP [dm6]	C	T	4.207e^-4	0.819	DOWNSTREAM CG12943 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3831941	2L_3831941_SNP [dm3] 2L_3831941_SNP [dm6]	C	T	4.212e^-4	0.819	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
2R	14770136	2R_14770136_SNP [dm3] 2R_18882631_SNP [dm6]	C	T	4.224e^-4	0.819	INTRON sano
2R	19603201	2R_19603201_SNP [dm3] 2R_23715678_SNP [dm6]	C	T	4.230e^-4	0.819	INTRON Sesn	TF binding site BDTNP1_TFBS_dl
2R	16765740	2R_16765740_SNP [dm3] 2R_20878235_SNP [dm6]	T	C	4.230e^-4	0.819	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
3L	16810425	3L_16810425_SNP [dm3] 3L_16817325_SNP [dm6]	T	G	4.232e^-4	0.819	INTRON nudC & 1 other
2R	14925224	2R_14925224_SNP [dm3] 2R_19037719_SNP [dm6]	G	T	4.233e^-4	0.819	INTERGENIC
3L	14438471	3L_14438471_SNP [dm3] 3L_14445371_SNP [dm6]	T	A	4.238e^-4	0.819	INTRON bbg	TF binding site mE1_TFBS_inv
X	2169180	X_2169180_SNP [dm3] X_2275147_SNP [dm6]	C	G	4.242e^-4	0.819	UPSTREAM CG2918 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7843629	2L_7843629_SNP [dm3] 2L_7843629_SNP [dm6]	T	A	4.244e^-4	0.819	INTERGENIC
2L	5028824	2L_5028824_DEL [dm3] 2L_5028824_DEL [dm6]	TC	T	4.246e^-4	0.819	UPSTREAM vkg & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	8117205	2R_8117205_SNP [dm3] 2R_12229700_SNP [dm6]	A	G	4.253e^-4	0.819	UPSTREAM CG8854 INTERGENIC
3R	4456553	3R_4456553_SNP [dm3] 3R_8630831_SNP [dm6]	C	A	4.255e^-4	0.819	DOWNSTREAM 5-HT2B INTERGENIC
2L	6410991	2L_6410991_SNP [dm3] 2L_6410991_SNP [dm6]	C	T	4.271e^-4	0.819	START_GAINED CG42368 UTR_5_PRIME CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2775990	X_2775990_SNP [dm3] X_2881957_SNP [dm6]	G	C	4.277e^-4	0.819	DOWNSTREAM CG14418 INTRON kirre
3L	17144947	3L_17144947_SNP [dm3] 3L_17151847_SNP [dm6]	A	G	4.287e^-4	0.819	INTRON Rbp6
X	5003599	X_5003599_SNP [dm3] X_5109566_SNP [dm6]	G	A	4.288e^-4	0.819	INTRON rg & 1 other
2L	18531201	2L_18531201_SNP [dm3] 2L_18531201_SNP [dm6]	A	G	4.288e^-4	0.819	SPLICE_SITE_REGION CG10211 DOWNSTREAM Pde11 INTRON CG10211
3R	20706712	3R_20706712_SNP [dm3] 3R_24880990_SNP [dm6]	T	C	4.292e^-4	0.819	DOWNSTREAM CG31121 INTRON CG11089	TF binding site mE1_TFBS_cad
3L	23429620	3L_23429620_SNP [dm3] 3L_23436520_SNP [dm6]	G	C	4.306e^-4	0.819	INTERGENIC
2L	9224983	2L_9224983_SNP [dm3] 2L_9224983_SNP [dm6]	G	T	4.309e^-4	0.819	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr
2L	7267135	2L_7267135_SNP [dm3] 2L_7267135_SNP [dm6]	G	A	4.311e^-4	0.819	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17778655	2L_17778655_SNP [dm3] 2L_17778655_SNP [dm6]	C	G	4.311e^-4	0.819	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9557930	2R_9557930_SNP [dm3] 2R_13670425_SNP [dm6]	A	G	4.311e^-4	0.819	SYNONYMOUS_CODING CG18368 INTRON fas
3L	14134577	3L_14134577_SNP [dm3] 3L_14141477_SNP [dm6]	T	G	4.325e^-4	0.819	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	17778621	2L_17778621_SNP [dm3] 2L_17778621_SNP [dm6]	G	A	4.346e^-4	0.819	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	3724692	2R_3724692_SNP [dm3] 2R_7837187_SNP [dm6]	G	C	4.347e^-4	0.819	INTRON Dgk	TF binding site mE1_TFBS_chinmo
2L	17778618	2L_17778618_SNP [dm3] 2L_17778618_SNP [dm6]	T	G	4.349e^-4	0.819	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17778619	2L_17778619_SNP [dm3] 2L_17778619_SNP [dm6]	C	A	4.349e^-4	0.819	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18950243	2R_18950243_SNP [dm3] 2R_23062720_SNP [dm6]	A	C	4.363e^-4	0.819	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	663580	2L_663580_SNP [dm3] 2L_663580_SNP [dm6]	G	C	4.365e^-4	0.819	INTRON ds
2R	19460827	2R_19460827_SNP [dm3] 2R_23573304_SNP [dm6]	C	T	4.367e^-4	0.819	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25262014	3R_25262014_DEL [dm3] 3R_29436292_DEL [dm6]	TA	T	4.367e^-4	0.819	INTRON Ptp99A
3R	18104633	3R_18104633_SNP [dm3] 3R_22278911_SNP [dm6]	C	G	4.370e^-4	0.819	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
2R	7220854	2R_7220854_SNP [dm3] 2R_11333349_SNP [dm6]	T	C	4.373e^-4	0.819	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8485676	3R_8485676_SNP [dm3] 3R_12659954_SNP [dm6]	T	C	4.379e^-4	0.819	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
3L	14426238	3L_14426238_SNP [dm3] 3L_14433138_SNP [dm6]	T	C	4.381e^-4	0.819	INTRON bbg
3R	12071026	3R_12071026_SNP [dm3] 3R_16245304_SNP [dm6]	G	T	4.381e^-4	0.819	INTRON tara	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12922845	3L_12922845_SNP [dm3] 3L_12929745_SNP [dm6]	G	A	4.396e^-4	0.819	INTERGENIC
3L	23118011	3L_23118011_DEL [dm3] 3L_23124911_DEL [dm6]	TT	T	4.397e^-4	0.819	INTERGENIC
3R	11572182	3R_11572182_SNP [dm3] 3R_15746460_SNP [dm6]	T	C	4.417e^-4	0.819	DOWNSTREAM CG4520 INTERGENIC
X	14346260	X_14346260_SNP [dm3] X_14452227_SNP [dm6]	A	G	4.419e^-4	0.819	INTRON dpr8
3L	22722797	3L_22722797_SNP [dm3] 3L_22729697_SNP [dm6]	T	C	4.420e^-4	0.819	UPSTREAM CG32454 INTRON CG11367
2L	2806801	2L_2806801_SNP [dm3] 2L_2806801_SNP [dm6]	G	T	4.421e^-4	0.819	INTRON daw
2R	16273933	2R_16273933_SNP [dm3] 2R_20386428_SNP [dm6]	T	G	4.431e^-4	0.819	INTERGENIC
3R	25349369	3R_25349369_SNP [dm3] 3R_29523647_SNP [dm6]	A	C	4.431e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6724400	X_6724400_SNP [dm3] X_6830367_SNP [dm6]	G	A	4.435e^-4	0.819	SYNONYMOUS_CODING nonC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13947093	2R_13947093_SNP [dm3] 2R_18059588_SNP [dm6]	G	A	4.436e^-4	0.819	UPSTREAM CR45314 INTERGENIC
2R	12113319	2R_12113319_SNP [dm3] 2R_16225814_SNP [dm6]	A	C	4.456e^-4	0.819	UPSTREAM CG15706 & 1 other INTRON CG15706
2R	14848035	2R_14848035_SNP [dm3] 2R_18960530_SNP [dm6]	A	G	4.457e^-4	0.819	INTERGENIC
3L	1142361	3L_1142361_SNP [dm3] 3L_1142361_SNP [dm6]	G	A	4.458e^-4	0.819	SYNONYMOUS_CODING bab2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12283352	3L_12283352_SNP [dm3] 3L_12290252_SNP [dm6]	G	A	4.461e^-4	0.819	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	26593621	3R_26593621_SNP [dm3] 3R_30767899_SNP [dm6]	G	T	4.465e^-4	0.819	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv

By genomic position
Variant impact
Gene name

lsm_Life_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results