DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.498e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2279 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9679611	2R_9679611_DEL [dm3] 2R_13792106_DEL [dm6]	CC	C	2.033e^-7	0.342	EXON CR43811
2R	14676098	2R_14676098_SNP [dm3] 2R_18788593_SNP [dm6]	C	T	3.650e^-7	0.342	INTRON CG15080
2R	12100255	2R_12100255_SNP [dm3] 2R_16212750_SNP [dm6]	T	C	1.544e^-6	0.652	INTRON mrj
2R	9676496	2R_9676496_SNP [dm3] 2R_13788991_SNP [dm6]	T	C	2.066e^-6	0.652	INTERGENIC
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	2.642e^-6	0.652	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	2.720e^-6	0.652	INTRON Spn
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	3.001e^-6	0.652	INTERGENIC	transposable element FlyBase
2L	8423456	2L_8423456_DEL [dm3] 2L_8423456_DEL [dm6]	TGCT	T	4.150e^-6	0.652	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	26490041	3R_26490041_SNP [dm3] 3R_30664319_SNP [dm6]	G	T	4.305e^-6	0.652	UPSTREAM CR45191 INTERGENIC
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	4.357e^-6	0.652	START_GAINED Sh UTR_5_PRIME Sh
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	5.112e^-6	0.652	UPSTREAM l_2_efl INTRON St3
2R	1354359	2R_1354359_SNP [dm3] 2R_5466854_SNP [dm6]	C	A	5.820e^-6	0.652	INTERGENIC	transposable element FlyBase
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	6.159e^-6	0.652	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
3R	22449876	3R_22449876_SNP [dm3] 3R_26624154_SNP [dm6]	G	T	6.281e^-6	0.652	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2R	9764517	2R_9764517_SNP [dm3] 2R_13877012_SNP [dm6]	C	T	6.339e^-6	0.652	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5204026	X_5204026_SNP [dm3] X_5309993_SNP [dm6]	A	T	6.352e^-6	0.652	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
2R	12076005	2R_12076005_SNP [dm3] 2R_16188500_SNP [dm6]	C	T	6.436e^-6	0.652	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20517634	3R_20517634_SNP [dm3] 3R_24691912_SNP [dm6]	C	T	6.551e^-6	0.652	SYNONYMOUS_CODING slo
2R	12073056	2R_12073056_SNP [dm3] 2R_16185551_SNP [dm6]	A	G	6.604e^-6	0.652	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16300782	3R_16300782_SNP [dm3] 3R_20475060_SNP [dm6]	T	C	7.561e^-6	0.704	INTRON Gfrl
3R	27267286	3R_27267286_SNP [dm3] 3R_31441564_SNP [dm6]	G	A	8.002e^-6	0.704	INTRON Gprk2
2R	9676653	2R_9676653_SNP [dm3] 2R_13789148_SNP [dm6]	G	A	8.257e^-6	0.704	INTERGENIC
2R	1354357	2R_1354357_SNP [dm3] 2R_5466852_SNP [dm6]	G	T	9.309e^-6	0.728	INTERGENIC	transposable element FlyBase
2L	10572922	2L_10572922_SNP [dm3] 2L_10572922_SNP [dm6]	T	C	9.944e^-6	0.728	INTRON Trim9
3L	10836895	3L_10836895_SNP [dm3] 3L_10843795_SNP [dm6]	A	G	1.021e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	9679289	2R_9679289_SNP [dm3] 2R_13791784_SNP [dm6]	T	G	1.030e^-5	0.728	UPSTREAM CR43811 INTERGENIC
X	16925265	X_16925265_SNP [dm3] X_17031232_SNP [dm6]	G	C	1.049e^-5	0.728	INTRON CG45002
2R	12075996	2R_12075996_SNP [dm3] 2R_16188491_SNP [dm6]	C	T	1.099e^-5	0.736	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15540432	2R_15540432_SNP [dm3] 2R_19652927_SNP [dm6]	C	T	1.210e^-5	0.756	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	1.290e^-5	0.756	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	1.362e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4132014	2L_4132014_SNP [dm3] 2L_4132014_SNP [dm6]	C	T	1.370e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5076530	X_5076530_SNP [dm3] X_5182497_SNP [dm6]	C	T	1.414e^-5	0.756	UPSTREAM CG5062 INTRON rg & 1 other
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	1.437e^-5	0.756	INTERGENIC	regulatory region REDfly_CRMs
2R	9677964	2R_9677964_SNP [dm3] 2R_13790459_SNP [dm6]	A	T	1.487e^-5	0.756	INTERGENIC
2R	8114508	2R_8114508_SNP [dm3] 2R_12227003_SNP [dm6]	C	T	1.544e^-5	0.756	UPSTREAM CG8854 INTRON CG8854
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	1.577e^-5	0.756	INTRON Ptp99A
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	1.625e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	1.734e^-5	0.756	UTR_3_PRIME Cpr50Ca
3L	7266474	3L_7266474_SNP [dm3] 3L_7273374_SNP [dm6]	G	A	1.738e^-5	0.756	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2R	9677957	2R_9677957_SNP [dm3] 2R_13790452_SNP [dm6]	A	T	1.860e^-5	0.756	INTERGENIC
3L	767649	3L_767649_SNP [dm3] 3L_767649_SNP [dm6]	T	C	1.975e^-5	0.756	INTERGENIC
2R	10011586	2R_10011586_SNP [dm3] 2R_14124081_SNP [dm6]	A	T	2.152e^-5	0.756	INTRON Prosap
2R	10011581	2R_10011581_SNP [dm3] 2R_14124076_SNP [dm6]	C	T	2.201e^-5	0.756	INTRON Prosap
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	2.206e^-5	0.756	DOWNSTREAM Cpr50Ca INTERGENIC
2R	9677994	2R_9677994_SNP [dm3] 2R_13790489_SNP [dm6]	T	A	2.262e^-5	0.756	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15939781	2R_15939781_SNP [dm3] 2R_20052276_SNP [dm6]	G	A	2.276e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	9677979	2R_9677979_SNP [dm3] 2R_13790474_SNP [dm6]	T	A	2.391e^-5	0.756	INTERGENIC
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	2.464e^-5	0.756	INTRON brp
3L	10836651	3L_10836651_SNP [dm3] 3L_10843551_SNP [dm6]	C	T	2.486e^-5	0.756	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12073844	2R_12073844_SNP [dm3] 2R_16186339_SNP [dm6]	A	T	2.522e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3346733	2R_3346733_DEL [dm3] 2R_7459228_DEL [dm6]	TA	T	2.574e^-5	0.756	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26490048	3R_26490048_SNP [dm3] 3R_30664326_SNP [dm6]	C	T	2.587e^-5	0.756	UPSTREAM CR45191 INTERGENIC
2L	4278870	2L_4278870_SNP [dm3] 2L_4278870_SNP [dm6]	A	T	2.671e^-5	0.756	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
2R	9679404	2R_9679404_SNP [dm3] 2R_13791899_SNP [dm6]	G	A	2.719e^-5	0.756	UPSTREAM CR43811 INTERGENIC
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	2.733e^-5	0.756	INTRON CG12484
2R	12072897	2R_12072897_SNP [dm3] 2R_16185392_SNP [dm6]	C	T	2.818e^-5	0.756	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12073843	2R_12073843_SNP [dm3] 2R_16186338_SNP [dm6]	G	T	2.844e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25264399	3R_25264399_SNP [dm3] 3R_29438677_SNP [dm6]	T	G	2.862e^-5	0.756	INTRON Ptp99A
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	2.879e^-5	0.756	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2L	7702077	2L_7702077_SNP [dm3] 2L_7702077_SNP [dm6]	A	G	2.928e^-5	0.756	UPSTREAM Tep2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5276771	2L_5276771_SNP [dm3] 2L_5276771_SNP [dm6]	G	A	2.948e^-5	0.756	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15140673	2L_15140673_SNP [dm3] 2L_15140673_SNP [dm6]	C	T	3.022e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25261849	3R_25261849_SNP [dm3] 3R_29436127_SNP [dm6]	T	C	3.033e^-5	0.756	INTRON Ptp99A
3R	25261801	3R_25261801_SNP [dm3] 3R_29436079_SNP [dm6]	T	A	3.197e^-5	0.756	INTRON Ptp99A
2L	5276745	2L_5276745_SNP [dm3] 2L_5276745_SNP [dm6]	A	T	3.200e^-5	0.756	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	3.228e^-5	0.756	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3R	26490897	3R_26490897_SNP [dm3] 3R_30665175_SNP [dm6]	C	A	3.359e^-5	0.756	INTRON CR45191
2L	5439206	2L_5439206_SNP [dm3] 2L_5439206_SNP [dm6]	A	G	3.369e^-5	0.756	INTRON CR31647
X	16925264	X_16925264_SNP [dm3] X_17031231_SNP [dm6]	G	A	3.388e^-5	0.756	INTRON CG45002
2R	9678044	2R_9678044_SNP [dm3] 2R_13790539_SNP [dm6]	T	A	3.437e^-5	0.756	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12111138	2R_12111138_SNP [dm3] 2R_16223633_SNP [dm6]	G	C	3.498e^-5	0.756	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA
2R	9799329	2R_9799329_INS [dm3] 2R_13911824_INS [dm6]	A	TGATGGTG	3.523e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799332	2R_9799332_SNP [dm3] 2R_13911827_SNP [dm6]	A	G	3.523e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799335	2R_9799335_SNP [dm3] 2R_13911830_SNP [dm6]	C	T	3.523e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	3.559e^-5	0.756	UPSTREAM l_2_efl INTRON St3
3R	8147882	3R_8147882_SNP [dm3] 3R_12322160_SNP [dm6]	C	T	3.574e^-5	0.756	DOWNSTREAM tRNA:CR31432 INTERGENIC
3L	7769451	3L_7769451_SNP [dm3] 3L_7776351_SNP [dm6]	A	T	3.586e^-5	0.756	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	13129051	3R_13129051_SNP [dm3] 3R_17303329_SNP [dm6]	C	G	3.597e^-5	0.756	INTERGENIC
2R	9675820	2R_9675820_SNP [dm3] 2R_13788315_SNP [dm6]	T	A	3.609e^-5	0.756	DOWNSTREAM Cpr50Ca INTERGENIC
3R	9702820	3R_9702820_SNP [dm3] 3R_13877098_SNP [dm6]	C	T	3.663e^-5	0.756	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5718115	2L_5718115_SNP [dm3] 2L_5718115_SNP [dm6]	A	C	3.668e^-5	0.756	DOWNSTREAM CG11149 & 1 other INTERGENIC
X	10751624	X_10751624_SNP [dm3] X_10857591_SNP [dm6]	G	A	3.670e^-5	0.756	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9799311	2R_9799311_SNP [dm3] 2R_13911806_SNP [dm6]	C	T	3.703e^-5	0.756	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	9006441	X_9006441_INS [dm3] X_9112408_INS [dm6]	C	CTT	3.794e^-5	0.756	INTRON AP-1gamma
2R	9677883	2R_9677883_SNP [dm3] 2R_13790378_SNP [dm6]	A	T	3.823e^-5	0.756	INTERGENIC
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	3.833e^-5	0.756	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	14676242	2R_14676242_SNP [dm3] 2R_18788737_SNP [dm6]	T	C	3.862e^-5	0.756	INTRON CG15080
2L	19884952	2L_19884952_SNP [dm3] 2L_19884952_SNP [dm6]	A	G	3.943e^-5	0.756	INTRON sick
2L	9079049	2L_9079049_SNP [dm3] 2L_9079049_SNP [dm6]	G	C	3.945e^-5	0.756	INTERGENIC
2L	4132068	2L_4132068_SNP [dm3] 2L_4132068_SNP [dm6]	T	G	3.981e^-5	0.756	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12073845	2R_12073845_DEL [dm3] 2R_16186340_DEL [dm6]	CGC	C	4.074e^-5	0.756	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2452853	2R_2452853_SNP [dm3] 2R_6565348_SNP [dm6]	A	G	4.117e^-5	0.756	INTRON jing
2R	9677887	2R_9677887_DEL [dm3] 2R_13790382_DEL [dm6]	TCCTTAGTATGAAGTACCTC...	T	4.128e^-5	0.756	INTERGENIC
3R	19207896	3R_19207896_SNP [dm3] 3R_23382174_SNP [dm6]	T	A	4.188e^-5	0.756	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9678025	2R_9678025_SNP [dm3] 2R_13790520_SNP [dm6]	T	A	4.240e^-5	0.756	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9677881	2R_9677881_SNP [dm3] 2R_13790376_SNP [dm6]	G	A	4.268e^-5	0.756	INTERGENIC
2L	17292496	2L_17292496_DEL [dm3] 2L_17292496_DEL [dm6]	AA	A	4.274e^-5	0.756	UPSTREAM CG6380 INTERGENIC
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	4.390e^-5	0.756	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
3R	17293564	3R_17293564_SNP [dm3] 3R_21467842_SNP [dm6]	C	A	4.440e^-5	0.756	INTERGENIC

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By genomic position
Variant impact
Gene name

lsm_Life_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results