DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.785e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07665

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2150 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9679611	2R_9679611_DEL [dm3] 2R_13792106_DEL [dm6]	CC	C	2.962e^-7	0.556	EXON CR43811
2R	14676098	2R_14676098_SNP [dm3] 2R_18788593_SNP [dm6]	C	T	2.214e^-6	0.808	INTRON CG15080
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	2.323e^-6	0.808	UPSTREAM l_2_efl INTRON St3
3L	2545668	3L_2545668_DEL [dm3] 3L_2545668_DEL [dm6]	TAAATTAAAGGCTTTGT...	T	2.546e^-6	0.808	INTRON Spn
2R	9676496	2R_9676496_SNP [dm3] 2R_13788991_SNP [dm6]	T	C	3.046e^-6	0.808	INTERGENIC
2R	8114508	2R_8114508_SNP [dm3] 2R_12227003_SNP [dm6]	C	T	3.217e^-6	0.808	UPSTREAM CG8854 INTRON CG8854
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	4.360e^-6	0.808	INTERGENIC	transposable element FlyBase
2R	1354359	2R_1354359_SNP [dm3] 2R_5466854_SNP [dm6]	C	A	4.955e^-6	0.808	INTERGENIC	transposable element FlyBase
X	16925265	X_16925265_SNP [dm3] X_17031232_SNP [dm6]	G	C	4.993e^-6	0.808	INTRON CG45002
2R	1354357	2R_1354357_SNP [dm3] 2R_5466852_SNP [dm6]	G	T	5.847e^-6	0.808	INTERGENIC	transposable element FlyBase
2R	17647628	2R_17647628_SNP [dm3] 2R_21760123_SNP [dm6]	C	A	6.268e^-6	0.808	INTERGENIC
3L	10836895	3L_10836895_SNP [dm3] 3L_10843795_SNP [dm6]	A	G	7.025e^-6	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17929699	2R_17929699_SNP [dm3] 2R_22042194_SNP [dm6]	A	G	7.581e^-6	0.808	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5204026	X_5204026_SNP [dm3] X_5309993_SNP [dm6]	A	T	8.159e^-6	0.808	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
2R	9764517	2R_9764517_SNP [dm3] 2R_13877012_SNP [dm6]	C	T	8.553e^-6	0.808	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17933312	X_17933312_SNP [dm3] X_18039279_SNP [dm6]	G	A	8.687e^-6	0.808	START_GAINED Sh UTR_5_PRIME Sh
X	10751624	X_10751624_SNP [dm3] X_10857591_SNP [dm6]	G	A	8.937e^-6	0.808	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9679289	2R_9679289_SNP [dm3] 2R_13791784_SNP [dm6]	T	G	9.078e^-6	0.808	UPSTREAM CR43811 INTERGENIC
2R	17647629	2R_17647629_SNP [dm3] 2R_21760124_SNP [dm6]	T	A	1.096e^-5	0.808	INTERGENIC
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	1.110e^-5	0.808	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
X	10751602	X_10751602_SNP [dm3] X_10857569_SNP [dm6]	G	A	1.226e^-5	0.808	UPSTREAM CG2186 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	7266474	3L_7266474_SNP [dm3] 3L_7273374_SNP [dm6]	G	A	1.377e^-5	0.808	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3R	22449876	3R_22449876_SNP [dm3] 3R_26624154_SNP [dm6]	G	T	1.639e^-5	0.808	UPSTREAM TwdlB DOWNSTREAM TwdlL INTERGENIC
2R	15540432	2R_15540432_SNP [dm3] 2R_19652927_SNP [dm6]	C	T	1.643e^-5	0.808	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	9799329	2R_9799329_INS [dm3] 2R_13911824_INS [dm6]	A	TGATGGTG	1.792e^-5	0.808	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799332	2R_9799332_SNP [dm3] 2R_13911827_SNP [dm6]	A	G	1.792e^-5	0.808	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9799335	2R_9799335_SNP [dm3] 2R_13911830_SNP [dm6]	C	T	1.792e^-5	0.808	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	12074021	2R_12074021_SNP [dm3] 2R_16186516_SNP [dm6]	C	A	1.807e^-5	0.808	UPSTREAM clu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Ubx
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	1.821e^-5	0.808	INTERGENIC	regulatory region REDfly_CRMs
2L	10572922	2L_10572922_SNP [dm3] 2L_10572922_SNP [dm6]	T	C	1.833e^-5	0.808	INTRON Trim9
3R	16300782	3R_16300782_SNP [dm3] 3R_20475060_SNP [dm6]	T	C	1.848e^-5	0.808	INTRON Gfrl
2R	9799311	2R_9799311_SNP [dm3] 2R_13911806_SNP [dm6]	C	T	1.864e^-5	0.808	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	12100255	2R_12100255_SNP [dm3] 2R_16212750_SNP [dm6]	T	C	1.969e^-5	0.808	INTRON mrj
2L	7281732	2L_7281732_SNP [dm3] 2L_7281732_SNP [dm6]	C	T	2.070e^-5	0.808	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18814298	2L_18814298_SNP [dm3] 2L_18814298_SNP [dm6]	T	C	2.113e^-5	0.808	DOWNSTREAM CG17325 & 1 other INTERGENIC
2R	9677964	2R_9677964_SNP [dm3] 2R_13790459_SNP [dm6]	A	T	2.118e^-5	0.808	INTERGENIC
X	16925264	X_16925264_SNP [dm3] X_17031231_SNP [dm6]	G	A	2.118e^-5	0.808	INTRON CG45002
2L	8423456	2L_8423456_DEL [dm3] 2L_8423456_DEL [dm6]	TGCT	T	2.207e^-5	0.808	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	2.263e^-5	0.808	INTRON brp
2L	18814299	2L_18814299_SNP [dm3] 2L_18814299_SNP [dm6]	A	G	2.338e^-5	0.808	DOWNSTREAM CG17325 & 1 other INTERGENIC
3L	9666801	3L_9666801_SNP [dm3] 3L_9673701_SNP [dm6]	A	G	2.359e^-5	0.808	INTRON fry
2R	12073056	2R_12073056_SNP [dm3] 2R_16185551_SNP [dm6]	A	G	2.432e^-5	0.808	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19207896	3R_19207896_SNP [dm3] 3R_23382174_SNP [dm6]	T	A	2.493e^-5	0.808	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9286685	2L_9286685_SNP [dm3] 2L_9286685_SNP [dm6]	T	C	2.507e^-5	0.808	INTRON Ggamma30A
3R	10313733	3R_10313733_SNP [dm3] 3R_14488011_SNP [dm6]	G	T	2.515e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9676653	2R_9676653_SNP [dm3] 2R_13789148_SNP [dm6]	G	A	2.574e^-5	0.808	INTERGENIC
X	5076530	X_5076530_SNP [dm3] X_5182497_SNP [dm6]	C	T	2.606e^-5	0.808	UPSTREAM CG5062 INTRON rg & 1 other
2R	9675391	2R_9675391_SNP [dm3] 2R_13787886_SNP [dm6]	G	A	2.679e^-5	0.808	DOWNSTREAM Cpr50Ca INTERGENIC
3R	20517634	3R_20517634_SNP [dm3] 3R_24691912_SNP [dm6]	C	T	2.703e^-5	0.808	SYNONYMOUS_CODING slo
2R	17647635	2R_17647635_INS [dm3] 2R_21760130_INS [dm6]	C	CC	2.719e^-5	0.808	INTERGENIC
2R	9677957	2R_9677957_SNP [dm3] 2R_13790452_SNP [dm6]	A	T	2.782e^-5	0.808	INTERGENIC
2R	8114799	2R_8114799_SNP [dm3] 2R_12227294_SNP [dm6]	G	A	2.814e^-5	0.808	UPSTREAM CG8854 INTRON CG8854
3R	13283483	3R_13283483_SNP [dm3] 3R_17457761_SNP [dm6]	C	T	2.814e^-5	0.808	UPSTREAM CG14330 INTERGENIC
X	20826251	X_20826251_SNP [dm3] X_20955224_SNP [dm6]	C	T	2.820e^-5	0.808	INTERGENIC
2L	15140673	2L_15140673_SNP [dm3] 2L_15140673_SNP [dm6]	C	T	2.827e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4132014	2L_4132014_SNP [dm3] 2L_4132014_SNP [dm6]	C	T	2.855e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17293564	3R_17293564_SNP [dm3] 3R_21467842_SNP [dm6]	C	A	2.973e^-5	0.808	INTERGENIC
3R	17293574	3R_17293574_SNP [dm3] 3R_21467852_SNP [dm6]	A	G	2.973e^-5	0.808	INTERGENIC
3R	17293596	3R_17293596_SNP [dm3] 3R_21467874_SNP [dm6]	T	A	2.973e^-5	0.808	INTERGENIC
X	20824995	X_20824995_INS [dm3] X_20953968_INS [dm6]	A	AAAAAA	2.979e^-5	0.808	INTERGENIC
X	20824984	X_20824984_SNP [dm3] X_20953957_SNP [dm6]	T	C	3.042e^-5	0.808	INTERGENIC
3R	17293551	3R_17293551_SNP [dm3] 3R_21467829_SNP [dm6]	T	G	3.045e^-5	0.808	INTERGENIC
2R	20191583	2R_20191583_SNP [dm3] 2R_24304060_SNP [dm6]	C	G	3.106e^-5	0.808	INTERGENIC	regulatory region REDfly_CRMs
2R	3346733	2R_3346733_DEL [dm3] 2R_7459228_DEL [dm6]	TA	T	3.126e^-5	0.808	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	1534413	2R_1534413_SNP [dm3] 2R_5646908_SNP [dm6]	T	C	3.153e^-5	0.808	INTRON CG11665
3L	12564316	3L_12564316_SNP [dm3] 3L_12571216_SNP [dm6]	G	A	3.205e^-5	0.808	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9679404	2R_9679404_SNP [dm3] 2R_13791899_SNP [dm6]	G	A	3.333e^-5	0.808	UPSTREAM CR43811 INTERGENIC
2R	10033162	2R_10033162_SNP [dm3] 2R_14145657_SNP [dm6]	T	A	3.362e^-5	0.808	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	17293603	3R_17293603_SNP [dm3] 3R_21467881_SNP [dm6]	C	T	3.383e^-5	0.808	INTERGENIC
2R	12073825	2R_12073825_DEL [dm3] 2R_16186320_DEL [dm6]	CCTCAACGACGC...	A	3.445e^-5	0.808	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9677994	2R_9677994_SNP [dm3] 2R_13790489_SNP [dm6]	T	A	3.513e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19573384	2R_19573384_SNP [dm3] 2R_23685861_SNP [dm6]	T	A	3.533e^-5	0.808	UPSTREAM l_2_efl INTRON St3
3R	8147882	3R_8147882_SNP [dm3] 3R_12322160_SNP [dm6]	C	T	3.690e^-5	0.808	DOWNSTREAM tRNA:CR31432 INTERGENIC
2R	9677979	2R_9677979_SNP [dm3] 2R_13790474_SNP [dm6]	T	A	3.717e^-5	0.808	INTERGENIC
3L	7769451	3L_7769451_SNP [dm3] 3L_7776351_SNP [dm6]	A	T	3.773e^-5	0.808	UPSTREAM Clk DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
2R	9675072	2R_9675072_SNP [dm3] 2R_13787567_SNP [dm6]	A	C	3.793e^-5	0.808	UTR_3_PRIME Cpr50Ca
X	16925193	X_16925193_SNP [dm3] X_17031160_SNP [dm6]	A	T	3.800e^-5	0.808	INTRON CG45002
3R	26088906	3R_26088906_SNP [dm3] 3R_30263184_SNP [dm6]	C	T	3.810e^-5	0.808	INTERGENIC
3R	10313668	3R_10313668_SNP [dm3] 3R_14487946_SNP [dm6]	T	C	3.847e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12073840	2R_12073840_SNP [dm3] 2R_16186335_SNP [dm6]	T	A	3.994e^-5	0.808	UPSTREAM clu & 1 other INTRON CG8441	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10836651	3L_10836651_SNP [dm3] 3L_10843551_SNP [dm6]	C	T	4.014e^-5	0.808	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3979536	X_3979536_SNP [dm3] X_4085503_SNP [dm6]	A	C	4.048e^-5	0.808	INTRON CG43689
X	10751574	X_10751574_SNP [dm3] X_10857541_SNP [dm6]	T	C	4.081e^-5	0.808	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	1221985	X_1221985_SNP [dm3] X_1327952_SNP [dm6]	G	A	4.148e^-5	0.808	SYNONYMOUS_CODING fs_1_N
2R	2452853	2R_2452853_SNP [dm3] 2R_6565348_SNP [dm6]	A	G	4.225e^-5	0.808	INTRON jing
3R	25483333	3R_25483333_SNP [dm3] 3R_29657611_SNP [dm6]	G	C	4.228e^-5	0.808	INTRON Dop1R2
X	15204317	X_15204317_SNP [dm3] X_15310284_SNP [dm6]	T	C	4.231e^-5	0.808	INTRON gce
2L	13058490	2L_13058490_SNP [dm3] 2L_13058490_SNP [dm6]	C	G	4.308e^-5	0.808	INTRON CG9932
3R	25485391	3R_25485391_SNP [dm3] 3R_29659669_SNP [dm6]	G	A	4.320e^-5	0.808	INTRON Dop1R2
3L	12564309	3L_12564309_SNP [dm3] 3L_12571209_SNP [dm6]	C	A	4.340e^-5	0.808	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17292496	2L_17292496_DEL [dm3] 2L_17292496_DEL [dm6]	AA	A	4.381e^-5	0.808	UPSTREAM CG6380 INTERGENIC
2R	10033109	2R_10033109_SNP [dm3] 2R_14145604_SNP [dm6]	C	T	4.394e^-5	0.808	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	7154304	3L_7154304_SNP [dm3] 3L_7161204_SNP [dm6]	T	A	4.437e^-5	0.808	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18964592	X_18964592_SNP [dm3] X_19070559_SNP [dm6]	T	C	4.481e^-5	0.808	INTERGENIC
2L	9079049	2L_9079049_SNP [dm3] 2L_9079049_SNP [dm6]	G	C	4.492e^-5	0.808	INTERGENIC
2L	18820270	2L_18820270_SNP [dm3] 2L_18820270_SNP [dm6]	T	C	4.559e^-5	0.808	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3L	7154297	3L_7154297_SNP [dm3] 3L_7161197_SNP [dm6]	T	G	4.600e^-5	0.808	UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10430998	2L_10430998_SNP [dm3] 2L_10430998_SNP [dm6]	T	A	4.615e^-5	0.808	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14791656	2R_14791656_SNP [dm3] 2R_18904151_SNP [dm6]	G	T	4.732e^-5	0.808	INTRON sano	TF binding site BDTNP1_TFBS_dl
2R	9675820	2R_9675820_SNP [dm3] 2R_13788315_SNP [dm6]	T	A	4.749e^-5	0.808	DOWNSTREAM Cpr50Ca INTERGENIC
2R	12076005	2R_12076005_SNP [dm3] 2R_16188500_SNP [dm6]	C	T	4.774e^-5	0.808	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14795609	2R_14795609_SNP [dm3] 2R_18908104_SNP [dm6]	C	A	4.778e^-5	0.808	DOWNSTREAM Vha100-3 INTRON sano
X	16925175	X_16925175_SNP [dm3] X_17031142_SNP [dm6]	A	G	4.785e^-5	0.808	INTRON CG45002
3L	2545690	3L_2545690_SNP [dm3] 3L_2545690_SNP [dm6]	G	A	4.792e^-5	0.808	INTRON Spn
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	4.799e^-5	0.808	INTERGENIC
2L	17292501	2L_17292501_SNP [dm3] 2L_17292501_SNP [dm6]	G	A	4.816e^-5	0.808	UPSTREAM CG6380 INTERGENIC
X	10751490	X_10751490_SNP [dm3] X_10857457_SNP [dm6]	A	G	4.869e^-5	0.808	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11920319	3R_11920319_INS [dm3] 3R_16094597_INS [dm6]	T	TG	4.876e^-5	0.808	UPSTREAM Mhcl INTRON Mhcl
3R	27267286	3R_27267286_SNP [dm3] 3R_31441564_SNP [dm6]	G	A	4.943e^-5	0.808	INTRON Gprk2
2R	15939781	2R_15939781_SNP [dm3] 2R_20052276_SNP [dm6]	G	A	4.947e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	12145080	2R_12145080_DEL [dm3] 2R_16257575_DEL [dm6]	CTCTTCCCG	C	4.975e^-5	0.808	INTRON CngA
2L	945241	2L_945241_SNP [dm3] 2L_945241_SNP [dm6]	T	C	4.979e^-5	0.808	INTRON CG4341
X	10751439	X_10751439_SNP [dm3] X_10857406_SNP [dm6]	C	G	5.076e^-5	0.808	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9078985	2L_9078985_SNP [dm3] 2L_9078985_SNP [dm6]	A	G	5.107e^-5	0.808	DOWNSTREAM CG12439 INTERGENIC
X	9006441	X_9006441_INS [dm3] X_9112408_INS [dm6]	C	CTT	5.115e^-5	0.808	INTRON AP-1gamma
X	8100507	X_8100507_SNP [dm3] X_8206474_SNP [dm6]	C	A	5.219e^-5	0.808	INTRON sdt
3L	7748848	3L_7748848_SNP [dm3] 3L_7755748_SNP [dm6]	G	A	5.309e^-5	0.808	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
X	1213768	X_1213768_SNP [dm3] X_1319735_SNP [dm6]	A	G	5.342e^-5	0.808	INTRON DAAM
2R	16326263	2R_16326263_SNP [dm3] 2R_20438758_SNP [dm6]	G	A	5.348e^-5	0.808	INTRON CG12484
2L	4799922	2L_4799922_SNP [dm3] 2L_4799922_SNP [dm6]	G	A	5.375e^-5	0.808	INTRON Clect27	TF binding site mE1_TFBS_cad
3L	12374674	3L_12374674_DEL [dm3] 3L_12381574_DEL [dm6]	GAAATTCTTTAACAAGGCGA...	G	5.377e^-5	0.808	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	13197656	3R_13197656_SNP [dm3] 3R_17371934_SNP [dm6]	C	G	5.411e^-5	0.808	UPSTREAM CR44256 INTERGENIC
3R	20807111	3R_20807111_SNP [dm3] 3R_24981389_SNP [dm6]	A	G	5.419e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8114726	2R_8114726_SNP [dm3] 2R_12227221_SNP [dm6]	A	G	5.434e^-5	0.808	UPSTREAM CG8854 INTRON CG8854
2R	14791611	2R_14791611_SNP [dm3] 2R_18904106_SNP [dm6]	G	A	5.457e^-5	0.808	INTRON sano
2L	4051252	2L_4051252_SNP [dm3] 2L_4051252_SNP [dm6]	T	A	5.485e^-5	0.808	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1362632	2R_1362632_SNP [dm3] 2R_5475127_SNP [dm6]	G	T	5.536e^-5	0.808	INTRON CG30440
3R	21707051	3R_21707051_SNP [dm3] 3R_25881329_SNP [dm6]	C	T	5.643e^-5	0.808	UTR_5_PRIME Tsp96F UPSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17300314	2L_17300314_SNP [dm3] 2L_17300314_SNP [dm6]	C	G	5.690e^-5	0.808	INTERGENIC
3L	7748843	3L_7748843_SNP [dm3] 3L_7755743_SNP [dm6]	G	A	5.716e^-5	0.808	UPSTREAM CG32373 DOWNSTREAM CG7409 INTRON CG32373
X	10751382	X_10751382_SNP [dm3] X_10857349_SNP [dm6]	C	T	5.723e^-5	0.808	UTR_5_PRIME sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17929804	2R_17929804_SNP [dm3] 2R_22042299_SNP [dm6]	A	G	5.775e^-5	0.808	SYNONYMOUS_CODING PpD5	TF binding site BDTNP1_TFBS_sna
3L	767649	3L_767649_SNP [dm3] 3L_767649_SNP [dm6]	T	C	5.790e^-5	0.808	INTERGENIC
2R	9677883	2R_9677883_SNP [dm3] 2R_13790378_SNP [dm6]	A	T	5.853e^-5	0.808	INTERGENIC
2R	13145394	2R_13145394_SNP [dm3] 2R_17257889_SNP [dm6]	G	A	5.866e^-5	0.808	UPSTREAM CG43108 INTRON mbl
2R	9678025	2R_9678025_SNP [dm3] 2R_13790520_SNP [dm6]	T	A	5.880e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16443782	2R_16443782_SNP [dm3] 2R_20556277_SNP [dm6]	C	T	6.071e^-5	0.808	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5872642	X_5872642_SNP [dm3] X_5978609_SNP [dm6]	G	A	6.190e^-5	0.808	INTRON Grip
X	16947237	X_16947237_SNP [dm3] X_17053204_SNP [dm6]	C	G	6.209e^-5	0.808	INTRON CG45002
3L	6028417	3L_6028417_SNP [dm3] 3L_6035317_SNP [dm6]	A	G	6.285e^-5	0.808	SYNONYMOUS_CODING yip7 UPSTREAM CG10477	TF binding site mE1_TFBS_cad
3R	180809	3R_180809_SNP [dm3] 3R_4355087_SNP [dm6]	T	A	6.298e^-5	0.808	INTERGENIC
2R	9677887	2R_9677887_DEL [dm3] 2R_13790382_DEL [dm6]	TCCTTAGTATGAAGTACCTC...	T	6.347e^-5	0.808	INTERGENIC
X	16947256	X_16947256_SNP [dm3] X_17053223_SNP [dm6]	C	A	6.350e^-5	0.808	INTRON CG45002
2R	10060129	2R_10060129_SNP [dm3] 2R_14172624_SNP [dm6]	A	G	6.357e^-5	0.808	NON_SYNONYMOUS_CODING CG8331 DOWNSTREAM mRpS16	TF binding site mE1_TFBS_cad
3L	14269828	3L_14269828_SNP [dm3] 3L_14276728_SNP [dm6]	T	C	6.399e^-5	0.808	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	3165442	2R_3165442_SNP [dm3] 2R_7277937_SNP [dm6]	T	C	6.443e^-5	0.808	UTR_5_PRIME Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25261801	3R_25261801_SNP [dm3] 3R_29436079_SNP [dm6]	T	A	6.455e^-5	0.808	INTRON Ptp99A
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	6.462e^-5	0.808	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
2R	9677881	2R_9677881_SNP [dm3] 2R_13790376_SNP [dm6]	G	A	6.564e^-5	0.808	INTERGENIC
2L	14071225	2L_14071225_SNP [dm3] 2L_14071225_SNP [dm6]	A	G	6.635e^-5	0.808	INTRON nAChRalpha5
2R	12073843	2R_12073843_SNP [dm3] 2R_16186338_SNP [dm6]	G	T	6.719e^-5	0.808	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7877976	3R_7877976_SNP [dm3] 3R_12052254_SNP [dm6]	A	C	6.746e^-5	0.808	INTERGENIC
2R	12075996	2R_12075996_SNP [dm3] 2R_16188491_SNP [dm6]	C	T	6.771e^-5	0.808	INTRON clu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9678044	2R_9678044_SNP [dm3] 2R_13790539_SNP [dm6]	T	A	6.797e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6388926	3L_6388926_SNP [dm3] 3L_6395826_SNP [dm6]	G	A	6.824e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1213593	X_1213593_SNP [dm3] X_1319560_SNP [dm6]	T	C	6.838e^-5	0.808	INTRON DAAM
2R	9795739	2R_9795739_SNP [dm3] 2R_13908234_SNP [dm6]	G	A	6.873e^-5	0.808	START_GAINED shot UTR_5_PRIME shot INTRON shot	TF binding site mE1_TFBS_cad
3R	8138927	3R_8138927_SNP [dm3] 3R_12313205_SNP [dm6]	T	G	6.931e^-5	0.808	DOWNSTREAM CG4066 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17033987	3R_17033987_SNP [dm3] 3R_21208265_SNP [dm6]	T	C	6.999e^-5	0.808	UPSTREAM SNF4Agamma INTRON SNF4Agamma
X	15295921	X_15295921_DEL [dm3] X_15401888_DEL [dm6]	AA	A	7.087e^-5	0.808	INTRON Cngl
3L	2254242	3L_2254242_SNP [dm3] 3L_2254242_SNP [dm6]	G	C	7.109e^-5	0.808	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	9666778	3L_9666778_SNP [dm3] 3L_9673678_SNP [dm6]	A	G	7.111e^-5	0.808	INTRON fry
3R	17956194	3R_17956194_SNP [dm3] 3R_22130472_SNP [dm6]	T	G	7.122e^-5	0.808	INTRON CG42390
3L	1081436	3L_1081436_SNP [dm3] 3L_1081436_SNP [dm6]	A	G	7.129e^-5	0.808	INTRON bab1
2R	14678042	2R_14678042_SNP [dm3] 2R_18790537_SNP [dm6]	A	C	7.175e^-5	0.808	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2R	17649028	2R_17649028_SNP [dm3] 2R_21761523_SNP [dm6]	A	C	7.266e^-5	0.808	INTERGENIC
3L	9666909	3L_9666909_SNP [dm3] 3L_9673809_SNP [dm6]	T	A	7.284e^-5	0.808	INTRON fry
2L	10431178	2L_10431178_SNP [dm3] 2L_10431178_SNP [dm6]	A	T	7.376e^-5	0.808	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12073844	2R_12073844_SNP [dm3] 2R_16186339_SNP [dm6]	A	T	7.401e^-5	0.808	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6388981	3L_6388981_SNP [dm3] 3L_6395881_SNP [dm6]	C	T	7.413e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4881532	2L_4881532_SNP [dm3] 2L_4881532_SNP [dm6]	C	T	7.431e^-5	0.808	SYNONYMOUS_CODING Cf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14443323	2R_14443323_SNP [dm3] 2R_18555818_SNP [dm6]	C	T	7.445e^-5	0.808	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso
3R	8148641	3R_8148641_SNP [dm3] 3R_12322919_SNP [dm6]	A	G	7.451e^-5	0.808	UPSTREAM CG10013 & 1 other INTERGENIC
2R	8114438	2R_8114438_SNP [dm3] 2R_12226933_SNP [dm6]	T	C	7.518e^-5	0.81	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3L	8540463	3L_8540463_SNP [dm3] 3L_8547363_SNP [dm6]	C	G	7.574e^-5	0.812	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5276745	2L_5276745_SNP [dm3] 2L_5276745_SNP [dm6]	A	T	7.627e^-5	0.812	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19688097	2L_19688097_SNP [dm3] 2L_19688097_SNP [dm6]	T	A	7.665e^-5	0.812	INTRON Lar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	972842	2L_972842_SNP [dm3] 2L_972842_SNP [dm6]	A	G	7.802e^-5	0.817	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17293275	3R_17293275_SNP [dm3] 3R_21467553_SNP [dm6]	T	A	7.882e^-5	0.817	INTERGENIC
3L	10837540	3L_10837540_DEL [dm3] 3L_10844440_DEL [dm6]	TCAAGTGTTTG...	T	7.889e^-5	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9792734	2R_9792734_SNP [dm3] 2R_13905229_SNP [dm6]	A	G	7.915e^-5	0.817	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	9666872	3L_9666872_SNP [dm3] 3L_9673772_SNP [dm6]	T	A	7.969e^-5	0.817	INTRON fry
3R	17956177	3R_17956177_SNP [dm3] 3R_22130455_SNP [dm6]	T	C	7.984e^-5	0.817	SPLICE_SITE_REGION CG42390 INTRON CG42390
2L	4132068	2L_4132068_SNP [dm3] 2L_4132068_SNP [dm6]	T	G	8.043e^-5	0.817	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9668131	2R_9668131_SNP [dm3] 2R_13780626_SNP [dm6]	G	T	8.060e^-5	0.817	UPSTREAM S-Lap7 INTRON Cpr50Ca
X	16946978	X_16946978_SNP [dm3] X_17052945_SNP [dm6]	G	A	8.137e^-5	0.818	INTRON CG45002
2L	5276771	2L_5276771_SNP [dm3] 2L_5276771_SNP [dm6]	G	A	8.200e^-5	0.818	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16947190	X_16947190_SNP [dm3] X_17053157_SNP [dm6]	G	T	8.264e^-5	0.818	INTRON CG45002
3R	25261849	3R_25261849_SNP [dm3] 3R_29436127_SNP [dm6]	T	C	8.309e^-5	0.818	INTRON Ptp99A
3R	25261852	3R_25261852_INS [dm3] 3R_29436130_INS [dm6]	T	TAAACTT	8.321e^-5	0.818	INTRON Ptp99A
3L	5400356	3L_5400356_SNP [dm3] 3L_5407256_SNP [dm6]	C	G	8.332e^-5	0.818	INTERGENIC
3R	7520555	3R_7520555_SNP [dm3] 3R_11694833_SNP [dm6]	A	T	8.391e^-5	0.82	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19573464	2R_19573464_SNP [dm3] 2R_23685941_SNP [dm6]	T	A	8.525e^-5	0.825	UPSTREAM l_2_efl INTRON St3
X	16947242	X_16947242_SNP [dm3] X_17053209_SNP [dm6]	A	G	8.580e^-5	0.825	INTRON CG45002
3L	13222267	3L_13222267_SNP [dm3] 3L_13229167_SNP [dm6]	A	G	8.623e^-5	0.825	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	10431186	2L_10431186_SNP [dm3] 2L_10431186_SNP [dm6]	A	G	8.642e^-5	0.825	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12145282	2R_12145282_SNP [dm3] 2R_16257777_SNP [dm6]	C	A	8.689e^-5	0.825	INTRON CngA
X	17269577	X_17269577_SNP [dm3] X_17375544_SNP [dm6]	A	T	8.726e^-5	0.825	INTERGENIC
3R	17956192	3R_17956192_SNP [dm3] 3R_22130470_SNP [dm6]	C	A	8.749e^-5	0.825	INTRON CG42390
2L	1635430	2L_1635430_SNP [dm3] 2L_1635430_SNP [dm6]	G	A	8.807e^-5	0.825	INTERGENIC
3R	26490041	3R_26490041_SNP [dm3] 3R_30664319_SNP [dm6]	G	T	8.848e^-5	0.825	UPSTREAM CR45191 INTERGENIC
3L	18092056	3L_18092056_INS [dm3] 3L_18098956_INS [dm6]	G	CATT	8.922e^-5	0.825	INTRON CG13698
2L	4896606	2L_4896606_SNP [dm3] 2L_4896606_SNP [dm6]	A	T	9.002e^-5	0.825	INTRON CG3036
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	9.009e^-5	0.825	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
2R	15570085	2R_15570085_SNP [dm3] 2R_19682580_SNP [dm6]	A	C	9.044e^-5	0.825	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9920615	2R_9920615_SNP [dm3] 2R_14033110_SNP [dm6]	C	T	9.058e^-5	0.825	INTRON mam
2R	7269285	2R_7269285_SNP [dm3] 2R_11381780_SNP [dm6]	A	G	9.244e^-5	0.838	SYNONYMOUS_CODING Sod3
2L	15225775	2L_15225775_SNP [dm3] 2L_15225775_SNP [dm6]	T	C	9.389e^-5	0.841	INTERGENIC
3R	25476842	3R_25476842_SNP [dm3] 3R_29651120_SNP [dm6]	C	T	9.395e^-5	0.841	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	25485365	3R_25485365_SNP [dm3] 3R_29659643_SNP [dm6]	A	G	9.441e^-5	0.841	INTRON Dop1R2
3R	26867558	3R_26867558_SNP [dm3] 3R_31041836_SNP [dm6]	T	C	9.464e^-5	0.841	SYNONYMOUS_CODING CanA1
3R	17956176	3R_17956176_SNP [dm3] 3R_22130454_SNP [dm6]	A	T	9.563e^-5	0.843	SPLICE_SITE_REGION CG42390 INTRON CG42390
2R	18571595	2R_18571595_SNP [dm3] 2R_22684090_SNP [dm6]	G	C	9.592e^-5	0.843	DOWNSTREAM ppa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14925188	2R_14925188_SNP [dm3] 2R_19037683_SNP [dm6]	A	G	9.616e^-5	0.843	INTERGENIC
2R	9675960	2R_9675960_SNP [dm3] 2R_13788455_SNP [dm6]	G	A	9.670e^-5	0.844	DOWNSTREAM Cpr50Ca INTERGENIC
3L	10767055	3L_10767055_SNP [dm3] 3L_10773955_SNP [dm6]	A	G	9.717e^-5	0.844	DOWNSTREAM CG43245 INTERGENIC
3L	18092051	3L_18092051_SNP [dm3] 3L_18098951_SNP [dm6]	C	G	9.907e^-5	0.856	INTRON CG13698
X	20605678	X_20605678_SNP [dm3] X_20734651_SNP [dm6]	A	G	9.986e^-5	0.859	UTR_3_PRIME CG1324 DOWNSTREAM CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13242326	3R_13242326_SNP [dm3] 3R_17416604_SNP [dm6]	T	A	1.008e^-4	0.863	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
2R	4912376	2R_4912376_SNP [dm3] 2R_9024871_SNP [dm6]	C	G	1.014e^-4	0.864	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14791561	2R_14791561_SNP [dm3] 2R_18904056_SNP [dm6]	G	T	1.056e^-4	0.864	INTRON sano
X	16925189	X_16925189_SNP [dm3] X_17031156_SNP [dm6]	C	T	1.057e^-4	0.864	INTRON CG45002
2R	12145078	2R_12145078_INS [dm3] 2R_16257573_INS [dm6]	A	AAACCCCCAAC...	1.064e^-4	0.864	INTRON CngA
3L	10837525	3L_10837525_SNP [dm3] 3L_10844425_SNP [dm6]	A	T	1.065e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10836872	3L_10836872_SNP [dm3] 3L_10843772_SNP [dm6]	G	T	1.067e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	7908727	X_7908727_SNP [dm3] X_8014694_SNP [dm6]	A	C	1.084e^-4	0.864	INTRON Tbh
3R	25485406	3R_25485406_SNP [dm3] 3R_29659684_SNP [dm6]	C	T	1.086e^-4	0.864	INTRON Dop1R2
X	5331139	X_5331139_SNP [dm3] X_5437106_SNP [dm6]	G	A	1.089e^-4	0.864	INTERGENIC
2L	12229044	2L_12229044_SNP [dm3] 2L_12229044_SNP [dm6]	A	G	1.089e^-4	0.864	INTRON aret
2R	1362633	2R_1362633_DEL [dm3] 2R_5475128_DEL [dm6]	TAA	T	1.100e^-4	0.864	INTRON CG30440
2R	10829799	2R_10829799_SNP [dm3] 2R_14942294_SNP [dm6]	A	T	1.101e^-4	0.864	UPSTREAM CG10257 INTERGENIC
2R	14925232	2R_14925232_SNP [dm3] 2R_19037727_SNP [dm6]	T	A	1.102e^-4	0.864	INTERGENIC
X	1219925	X_1219925_SNP [dm3] X_1325892_SNP [dm6]	T	G	1.106e^-4	0.864	NON_SYNONYMOUS_CODING fs_1_N	TF binding site mE1_TFBS_chinmo
3L	1233234	3L_1233234_SNP [dm3] 3L_1233234_SNP [dm6]	C	T	1.107e^-4	0.864	UPSTREAM CG33966 DOWNSTREAM mwh INTRON CG33965
3R	10368541	3R_10368541_SNP [dm3] 3R_14542819_SNP [dm6]	G	C	1.107e^-4	0.864	INTRON Pde6
2R	20217102	2R_20217102_SNP [dm3] 2R_24329579_SNP [dm6]	T	A	1.112e^-4	0.864	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3R	19640066	3R_19640066_SNP [dm3] 3R_23814344_SNP [dm6]	C	T	1.113e^-4	0.864	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
2L	9862304	2L_9862304_INS [dm3] 2L_9862304_INS [dm6]	A	AGCAATTAA	1.115e^-4	0.864	INTRON nAChRalpha6
3R	22279165	3R_22279165_SNP [dm3] 3R_26453443_SNP [dm6]	G	T	1.120e^-4	0.864	INTRON CG5447
2R	9798932	2R_9798932_SNP [dm3] 2R_13911427_SNP [dm6]	G	A	1.120e^-4	0.864	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5276762	2L_5276762_SNP [dm3] 2L_5276762_SNP [dm6]	G	A	1.141e^-4	0.864	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12023875	2R_12023875_SNP [dm3] 2R_16136370_SNP [dm6]	A	C	1.145e^-4	0.864	INTRON spin
2L	4994500	2L_4994500_SNP [dm3] 2L_4994500_SNP [dm6]	C	T	1.151e^-4	0.864	SPLICE_SITE_REGION Rtnl1 INTRON Rtnl1
2R	13145142	2R_13145142_SNP [dm3] 2R_17257637_SNP [dm6]	T	C	1.154e^-4	0.864	NON_SYNONYMOUS_CODING CG43108 INTRON mbl
2R	16102012	2R_16102012_SNP [dm3] 2R_20214507_SNP [dm6]	G	A	1.156e^-4	0.864	INTERGENIC
2L	9362484	2L_9362484_SNP [dm3] 2L_9362484_SNP [dm6]	G	T	1.158e^-4	0.864	INTERGENIC
3R	10230428	3R_10230428_SNP [dm3] 3R_14404706_SNP [dm6]	G	C	1.162e^-4	0.864	INTRON cv-c
2L	5718115	2L_5718115_SNP [dm3] 2L_5718115_SNP [dm6]	A	C	1.164e^-4	0.864	DOWNSTREAM CG11149 & 1 other INTERGENIC
2L	4994383	2L_4994383_SNP [dm3] 2L_4994383_SNP [dm6]	A	G	1.166e^-4	0.864	SYNONYMOUS_CODING Rtnl1
2L	4051240	2L_4051240_SNP [dm3] 2L_4051240_SNP [dm6]	C	T	1.166e^-4	0.864	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15140640	2L_15140640_SNP [dm3] 2L_15140640_SNP [dm6]	A	T	1.185e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	12089161	2R_12089161_SNP [dm3] 2R_16201656_SNP [dm6]	C	T	1.187e^-4	0.864	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2R	13144763	2R_13144763_SNP [dm3] 2R_17257258_SNP [dm6]	A	C	1.193e^-4	0.864	UTR_3_PRIME CG43108 INTRON mbl
3R	15145961	3R_15145961_SNP [dm3] 3R_19320239_SNP [dm6]	G	A	1.198e^-4	0.864	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9346938	2L_9346938_SNP [dm3] 2L_9346938_SNP [dm6]	A	T	1.206e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8174955	3R_8174955_SNP [dm3] 3R_12349233_SNP [dm6]	G	A	1.213e^-4	0.864	SYNONYMOUS_CODING CG10038
2R	12145295	2R_12145295_DEL [dm3] 2R_16257790_DEL [dm6]	ATTGA	A	1.222e^-4	0.864	INTRON CngA
2R	14994295	2R_14994295_SNP [dm3] 2R_19106790_SNP [dm6]	G	A	1.227e^-4	0.864	INTRON 5-HT1A
3L	12981081	3L_12981081_SNP [dm3] 3L_12987981_SNP [dm6]	T	A	1.233e^-4	0.864	INTERGENIC
2L	9825822	2L_9825822_SNP [dm3] 2L_9825822_SNP [dm6]	C	A	1.241e^-4	0.864	INTRON nAChRalpha6
3R	8148673	3R_8148673_SNP [dm3] 3R_12322951_SNP [dm6]	T	G	1.242e^-4	0.864	UPSTREAM CG10013 & 1 other INTERGENIC
3L	14134628	3L_14134628_SNP [dm3] 3L_14141528_SNP [dm6]	C	T	1.242e^-4	0.864	INTERGENIC	regulatory region REDfly_CRMs
2R	16317394	2R_16317394_SNP [dm3] 2R_20429889_SNP [dm6]	A	G	1.248e^-4	0.864	INTRON CG12484
3L	12564284	3L_12564284_DEL [dm3] 3L_12571184_DEL [dm6]	CGTG	C	1.250e^-4	0.864	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19884952	2L_19884952_SNP [dm3] 2L_19884952_SNP [dm6]	A	G	1.251e^-4	0.864	INTRON sick
2R	8117205	2R_8117205_SNP [dm3] 2R_12229700_SNP [dm6]	A	G	1.255e^-4	0.864	UPSTREAM CG8854 INTERGENIC
3R	26869106	3R_26869106_SNP [dm3] 3R_31043384_SNP [dm6]	C	T	1.256e^-4	0.864	SPLICE_SITE_REGION CanA1 INTRON CanA1
X	12029576	X_12029576_SNP [dm3] X_12135543_SNP [dm6]	T	A	1.259e^-4	0.864	INTRON Ten-a
2L	10572928	2L_10572928_SNP [dm3] 2L_10572928_SNP [dm6]	G	A	1.260e^-4	0.864	INTRON Trim9
2R	14792009	2R_14792009_SNP [dm3] 2R_18904504_SNP [dm6]	T	G	1.264e^-4	0.864	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7220740	2R_7220740_SNP [dm3] 2R_11333235_SNP [dm6]	C	T	1.265e^-4	0.864	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19404136	2R_19404136_DEL [dm3] 2R_23516613_DEL [dm6]	TTG	GA	1.275e^-4	0.864	INTERGENIC
3R	26490897	3R_26490897_SNP [dm3] 3R_30665175_SNP [dm6]	C	A	1.284e^-4	0.864	INTRON CR45191
3R	8521991	3R_8521991_SNP [dm3] 3R_12696269_SNP [dm6]	G	A	1.287e^-4	0.864	SYNONYMOUS_CODING NijC
2L	2686887	2L_2686887_SNP [dm3] 2L_2686887_SNP [dm6]	A	G	1.290e^-4	0.864	INTRON CG31690
3R	8174934	3R_8174934_SNP [dm3] 3R_12349212_SNP [dm6]	A	G	1.309e^-4	0.864	SYNONYMOUS_CODING CG10038
2L	1675518	2L_1675518_SNP [dm3] 2L_1675518_SNP [dm6]	A	G	1.311e^-4	0.864	INTRON chinmo
2R	12145306	2R_12145306_SNP [dm3] 2R_16257801_SNP [dm6]	A	G	1.317e^-4	0.864	INTRON CngA
3L	11273998	3L_11273998_SNP [dm3] 3L_11280898_SNP [dm6]	C	G	1.320e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18726410	3L_18726410_SNP [dm3] 3L_18733310_SNP [dm6]	G	A	1.326e^-4	0.864	INTERGENIC
3L	12494061	3L_12494061_SNP [dm3] 3L_12500961_SNP [dm6]	T	C	1.327e^-4	0.864	NON_SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
X	16947214	X_16947214_SNP [dm3] X_17053181_SNP [dm6]	G	A	1.332e^-4	0.864	INTRON CG45002
2R	14925238	2R_14925238_SNP [dm3] 2R_19037733_SNP [dm6]	G	C	1.349e^-4	0.864	INTERGENIC
2R	9679585	2R_9679585_SNP [dm3] 2R_13792080_SNP [dm6]	G	T	1.351e^-4	0.864	EXON CR43811
3L	2545488	3L_2545488_SNP [dm3] 3L_2545488_SNP [dm6]	A	G	1.356e^-4	0.864	INTRON Spn
2R	15282821	2R_15282821_SNP [dm3] 2R_19395316_SNP [dm6]	G	A	1.369e^-4	0.864	DOWNSTREAM cer INTRON SdhA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	13425471	2L_13425471_SNP [dm3] 2L_13425471_SNP [dm6]	C	G	1.380e^-4	0.864	INTRON CG42784
X	8100504	X_8100504_SNP [dm3] X_8206471_SNP [dm6]	A	T	1.382e^-4	0.864	INTRON sdt
3R	13129051	3R_13129051_SNP [dm3] 3R_17303329_SNP [dm6]	C	G	1.389e^-4	0.864	INTERGENIC
2R	7596387	2R_7596387_SNP [dm3] 2R_11708882_SNP [dm6]	C	A	1.402e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	5204064	X_5204064_SNP [dm3] X_5310031_SNP [dm6]	G	C	1.409e^-4	0.864	DOWNSTREAM TrxT INTRON snf
3R	8202459	3R_8202459_SNP [dm3] 3R_12376737_SNP [dm6]	T	G	1.410e^-4	0.864	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
X	16947103	X_16947103_DEL [dm3] X_17053070_DEL [dm6]	TTAGTTTTAAATCA...	T	1.416e^-4	0.864	INTRON CG45002
X	11873324	X_11873324_SNP [dm3] X_11979291_SNP [dm6]	C	T	1.416e^-4	0.864	INTRON cac
2L	13258450	2L_13258450_SNP [dm3] 2L_13258450_SNP [dm6]	G	A	1.417e^-4	0.864	UTR_3_PRIME CG31851 DOWNSTREAM CG31730 & 1 other
3L	12374656	3L_12374656_SNP [dm3] 3L_12381556_SNP [dm6]	C	T	1.421e^-4	0.864	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	14925367	2R_14925367_SNP [dm3] 2R_19037862_SNP [dm6]	A	G	1.421e^-4	0.864	INTERGENIC
X	6128016	X_6128016_SNP [dm3] X_6233983_SNP [dm6]	C	T	1.429e^-4	0.864	UTR_3_PRIME CG14446 DOWNSTREAM CG14446
X	5323421	X_5323421_SNP [dm3] X_5429388_SNP [dm6]	C	T	1.431e^-4	0.864	UPSTREAM CG15784 DOWNSTREAM CR45517 INTERGENIC
2R	14791544	2R_14791544_DEL [dm3] 2R_18904039_DEL [dm6]	TTTATTTGTGACAAC...	T	1.444e^-4	0.864	INTRON sano
2R	1326148	2R_1326148_SNP [dm3] 2R_5438643_SNP [dm6]	T	C	1.445e^-4	0.864	INTRON laccase2
3L	18034778	3L_18034778_SNP [dm3] 3L_18041678_SNP [dm6]	A	G	1.446e^-4	0.864	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
2R	7596388	2R_7596388_SNP [dm3] 2R_11708883_SNP [dm6]	T	C	1.461e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4897079	2L_4897079_SNP [dm3] 2L_4897079_SNP [dm6]	A	G	1.461e^-4	0.864	INTRON CG3036
2R	12146503	2R_12146503_SNP [dm3] 2R_16258998_SNP [dm6]	A	C	1.462e^-4	0.864	INTRON CngA
2L	535026	2L_535026_SNP [dm3] 2L_535026_SNP [dm6]	G	A	1.468e^-4	0.864	INTRON ush
2L	4994486	2L_4994486_SNP [dm3] 2L_4994486_SNP [dm6]	T	C	1.469e^-4	0.864	INTRON Rtnl1
2R	10033118	2R_10033118_SNP [dm3] 2R_14145613_SNP [dm6]	T	G	1.474e^-4	0.864	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	5204053	X_5204053_SNP [dm3] X_5310020_SNP [dm6]	G	T	1.475e^-4	0.864	DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl
2R	4283252	2R_4283252_SNP [dm3] 2R_8395747_SNP [dm6]	G	T	1.485e^-4	0.864	UTR_3_PRIME pdm3 DOWNSTREAM CG2121
2L	7843438	2L_7843438_SNP [dm3] 2L_7843438_SNP [dm6]	T	C	1.498e^-4	0.864	INTERGENIC
X	11873309	X_11873309_SNP [dm3] X_11979276_SNP [dm6]	T	G	1.498e^-4	0.864	INTRON cac
3R	14024155	3R_14024155_SNP [dm3] 3R_18198433_SNP [dm6]	T	C	1.505e^-4	0.864	INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17735688	3R_17735688_SNP [dm3] 3R_21909966_SNP [dm6]	A	T	1.510e^-4	0.864	INTERGENIC
X	12029743	X_12029743_SNP [dm3] X_12135710_SNP [dm6]	A	G	1.527e^-4	0.864	INTRON Ten-a
X	3194564	X_3194564_SNP [dm3] X_3300531_SNP [dm6]	C	T	1.528e^-4	0.864	INTRON dnc
2R	17649122	2R_17649122_SNP [dm3] 2R_21761617_SNP [dm6]	T	G	1.528e^-4	0.864	INTERGENIC
2R	17649078	2R_17649078_SNP [dm3] 2R_21761573_SNP [dm6]	T	C	1.531e^-4	0.864	INTERGENIC
3R	15821000	3R_15821000_SNP [dm3] 3R_19995278_SNP [dm6]	C	A	1.532e^-4	0.864	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20192207	2R_20192207_SNP [dm3] 2R_24304684_SNP [dm6]	C	T	1.532e^-4	0.864	INTERGENIC	regulatory region REDfly_CRMs
3R	26871778	3R_26871778_SNP [dm3] 3R_31046056_SNP [dm6]	G	A	1.537e^-4	0.864	UPSTREAM CG33920 INTRON CanA1	TF binding site BDTNP1_TFBS_prd
3R	9702820	3R_9702820_SNP [dm3] 3R_13877098_SNP [dm6]	C	T	1.544e^-4	0.864	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	760112	3L_760112_SNP [dm3] 3L_760112_SNP [dm6]	C	T	1.546e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	16760693	X_16760693_INS [dm3] X_16866660_INS [dm6]	T	TTCCTTT	1.551e^-4	0.864	INTRON CG13003
2L	5536847	2L_5536847_SNP [dm3] 2L_5536847_SNP [dm6]	A	G	1.556e^-4	0.864	UPSTREAM tomb DOWNSTREAM CG14015 & 1 other INTERGENIC
3L	7266444	3L_7266444_SNP [dm3] 3L_7273344_SNP [dm6]	G	T	1.560e^-4	0.864	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3R	14523040	3R_14523040_INS [dm3] 3R_18697318_INS [dm6]	A	AA	1.565e^-4	0.864	INTERGENIC
2R	18615020	2R_18615020_SNP [dm3] 2R_22727515_SNP [dm6]	C	A	1.566e^-4	0.864	INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16279824	X_16279824_SNP [dm3] X_16385791_SNP [dm6]	C	T	1.569e^-4	0.864	UPSTREAM CG9992 & 1 other INTRON CG4239	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17269583	X_17269583_SNP [dm3] X_17375550_SNP [dm6]	A	G	1.573e^-4	0.864	INTERGENIC
3R	13197670	3R_13197670_SNP [dm3] 3R_17371948_SNP [dm6]	G	T	1.580e^-4	0.864	UPSTREAM CR44256 INTERGENIC
3R	264221	3R_264221_SNP [dm3] 3R_4438499_SNP [dm6]	C	A	1.581e^-4	0.864	NON_SYNONYMOUS_CODING CG14650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10033113	2R_10033113_SNP [dm3] 2R_14145608_SNP [dm6]	C	A	1.582e^-4	0.864	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	15280332	3R_15280332_SNP [dm3] 3R_19454610_SNP [dm6]	A	T	1.583e^-4	0.864	INTRON CG31221
2R	4912369	2R_4912369_SNP [dm3] 2R_9024864_SNP [dm6]	A	C	1.596e^-4	0.864	INTRON CG8170	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10033124	2R_10033124_SNP [dm3] 2R_14145619_SNP [dm6]	T	C	1.598e^-4	0.864	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9675734	2R_9675734_SNP [dm3] 2R_13788229_SNP [dm6]	T	C	1.598e^-4	0.864	DOWNSTREAM Cpr50Ca INTERGENIC
2R	18240429	2R_18240429_SNP [dm3] 2R_22352924_SNP [dm6]	C	T	1.599e^-4	0.864	INTRON Liprin-gamma
X	1221320	X_1221320_SNP [dm3] X_1327287_SNP [dm6]	G	A	1.604e^-4	0.864	INTRON fs_1_N
2R	10011581	2R_10011581_SNP [dm3] 2R_14124076_SNP [dm6]	C	T	1.608e^-4	0.864	INTRON Prosap
2R	10011586	2R_10011586_SNP [dm3] 2R_14124081_SNP [dm6]	A	T	1.621e^-4	0.864	INTRON Prosap
2R	12146480	2R_12146480_SNP [dm3] 2R_16258975_SNP [dm6]	C	T	1.622e^-4	0.864	INTRON CngA
3L	12374717	3L_12374717_SNP [dm3] 3L_12381617_SNP [dm6]	A	T	1.630e^-4	0.864	INTRON Ncc69	TF binding site mE1_TFBS_inv
X	16946904	X_16946904_SNP [dm3] X_17052871_SNP [dm6]	G	T	1.633e^-4	0.864	INTRON CG45002
X	9006430	X_9006430_SNP [dm3] X_9112397_SNP [dm6]	G	A	1.647e^-4	0.864	INTRON AP-1gamma
2R	14562767	2R_14562767_SNP [dm3] 2R_18675262_SNP [dm6]	C	T	1.651e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11651483	3R_11651483_SNP [dm3] 3R_15825761_SNP [dm6]	C	T	1.656e^-4	0.864	START_GAINED CG4576 UTR_5_PRIME CG4576 INTRON rec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5439206	2L_5439206_SNP [dm3] 2L_5439206_SNP [dm6]	A	G	1.663e^-4	0.864	INTRON CR31647
3L	11365371	3L_11365371_SNP [dm3] 3L_11372271_SNP [dm6]	A	C	1.667e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	9079134	2L_9079134_SNP [dm3] 2L_9079134_SNP [dm6]	C	T	1.667e^-4	0.864	INTERGENIC
2L	7267135	2L_7267135_SNP [dm3] 2L_7267135_SNP [dm6]	G	A	1.672e^-4	0.864	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	2829939	X_2829939_SNP [dm3] X_2935906_SNP [dm6]	A	G	1.687e^-4	0.864	NON_SYNONYMOUS_CODING CG3592 INTRON kirre
3R	22288539	3R_22288539_SNP [dm3] 3R_26462817_SNP [dm6]	A	T	1.687e^-4	0.864	INTRON CG5455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9073099	2L_9073099_SNP [dm3] 2L_9073099_SNP [dm6]	A	G	1.695e^-4	0.864	INTERGENIC
2R	14676242	2R_14676242_SNP [dm3] 2R_18788737_SNP [dm6]	T	C	1.698e^-4	0.864	INTRON CG15080
X	16946980	X_16946980_DEL [dm3] X_17052947_DEL [dm6]	GG	G	1.702e^-4	0.864	INTRON CG45002
X	5204069	X_5204069_DEL [dm3] X_5310036_DEL [dm6]	AA	A	1.711e^-4	0.864	DOWNSTREAM TrxT INTRON snf
2R	1369971	2R_1369971_DEL [dm3] 2R_5482466_DEL [dm6]	CCCACCATCTGTGTTTTGCG...	C	1.721e^-4	0.864	INTRON CG30440	transposable element FlyBase
2R	7127560	2R_7127560_SNP [dm3] 2R_11240055_SNP [dm6]	G	T	1.732e^-4	0.864	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
2R	13739049	2R_13739049_SNP [dm3] 2R_17851544_SNP [dm6]	G	T	1.734e^-4	0.864	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	7487319	2L_7487319_SNP [dm3] 2L_7487319_SNP [dm6]	C	A	1.735e^-4	0.864	INTRON Ziz
2L	10642909	2L_10642909_SNP [dm3] 2L_10642909_SNP [dm6]	C	G	1.737e^-4	0.864	SYNONYMOUS_CODING CG31872
3R	17692876	3R_17692876_SNP [dm3] 3R_21867154_SNP [dm6]	C	T	1.739e^-4	0.864	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
3L	2367815	3L_2367815_SNP [dm3] 3L_2367815_SNP [dm6]	G	T	1.740e^-4	0.864	DOWNSTREAM CG1317 INTERGENIC
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	1.742e^-4	0.864	INTRON fry
2L	12042656	2L_12042656_SNP [dm3] 2L_12042656_SNP [dm6]	C	T	1.746e^-4	0.864	SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12042711	2L_12042711_SNP [dm3] 2L_12042711_SNP [dm6]	G	A	1.746e^-4	0.864	NON_SYNONYMOUS_CODING CG6785	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3007072	3R_3007072_SNP [dm3] 3R_7181350_SNP [dm6]	T	C	1.751e^-4	0.864	INTRON sas	TF binding site mE1_TFBS_cad
3L	10836909	3L_10836909_SNP [dm3] 3L_10843809_SNP [dm6]	T	C	1.762e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	15939774	2R_15939774_SNP [dm3] 2R_20052269_SNP [dm6]	C	T	1.764e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	6121036	X_6121036_SNP [dm3] X_6227003_SNP [dm6]	C	T	1.764e^-4	0.864	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18034777	3L_18034777_SNP [dm3] 3L_18041677_SNP [dm6]	G	T	1.766e^-4	0.864	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
3L	12374733	3L_12374733_SNP [dm3] 3L_12381633_SNP [dm6]	T	G	1.769e^-4	0.864	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	8209553	3R_8209553_SNP [dm3] 3R_12383831_SNP [dm6]	G	A	1.776e^-4	0.864	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7581569	2L_7581569_SNP [dm3] 2L_7581569_SNP [dm6]	T	A	1.779e^-4	0.864	UPSTREAM Spn28B INTERGENIC
3R	9702120	3R_9702120_SNP [dm3] 3R_13876398_SNP [dm6]	G	A	1.790e^-4	0.864	INTRON E5	TF binding site BDTNP1_TFBS_dl
2L	3378046	2L_3378046_SNP [dm3] 2L_3378046_SNP [dm6]	A	T	1.794e^-4	0.864	SYNONYMOUS_CODING Ptpa	TF binding site mE1_TFBS_sens
2R	10074004	2R_10074004_SNP [dm3] 2R_14186499_SNP [dm6]	G	C	1.800e^-4	0.864	SYNONYMOUS_CODING CG30069	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	1820135	2R_1820135_SNP [dm3] 2R_5932630_SNP [dm6]	G	A	1.812e^-4	0.864	INTERGENIC
X	8895713	X_8895713_SNP [dm3] X_9001680_SNP [dm6]	G	A	1.814e^-4	0.864	SYNONYMOUS_CODING rdgA INTRON rdgA & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	12505603	2L_12505603_INS [dm3] 2L_12505603_INS [dm6]	A	AA	1.815e^-4	0.864	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	26867953	3R_26867953_SNP [dm3] 3R_31042231_SNP [dm6]	T	G	1.817e^-4	0.864	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
2L	9362482	2L_9362482_INS [dm3] 2L_9362482_INS [dm6]	A	ACAC	1.823e^-4	0.864	INTERGENIC
X	20824939	X_20824939_SNP [dm3] X_20953912_SNP [dm6]	T	A	1.825e^-4	0.864	INTERGENIC
3R	12732724	3R_12732724_SNP [dm3] 3R_16907002_SNP [dm6]	C	T	1.827e^-4	0.864	INTRON iab-8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	5276765	2L_5276765_SNP [dm3] 2L_5276765_SNP [dm6]	G	A	1.830e^-4	0.864	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14024489	3R_14024489_SNP [dm3] 3R_18198767_SNP [dm6]	T	A	1.830e^-4	0.864	UTR_5_PRIME Ssdp INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	10382802	X_10382802_SNP [dm3] X_10488769_SNP [dm6]	T	A	1.837e^-4	0.864	INTERGENIC
X	4975188	X_4975188_SNP [dm3] X_5081155_SNP [dm6]	G	T	1.839e^-4	0.864	INTRON CG32767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	14024436	3R_14024436_SNP [dm3] 3R_18198714_SNP [dm6]	T	C	1.842e^-4	0.864	UTR_5_PRIME Ssdp INTRON Ssdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7220722	2R_7220722_SNP [dm3] 2R_11333217_SNP [dm6]	G	A	1.845e^-4	0.864	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12579390	3R_12579390_SNP [dm3] 3R_16753668_SNP [dm6]	G	T	1.852e^-4	0.864	INTRON bxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11873477	X_11873477_SNP [dm3] X_11979444_SNP [dm6]	A	G	1.874e^-4	0.864	INTRON cac
3L	2280705	3L_2280705_SNP [dm3] 3L_2280705_SNP [dm6]	T	C	1.884e^-4	0.864	INTERGENIC
3R	25264399	3R_25264399_SNP [dm3] 3R_29438677_SNP [dm6]	T	G	1.886e^-4	0.864	INTRON Ptp99A
2R	7499421	2R_7499421_INS [dm3] 2R_11611916_INS [dm6]	G	GG	1.899e^-4	0.864	INTRON tou	TF binding site BDTNP1_TFBS_dl
X	1221158	X_1221158_SNP [dm3] X_1327125_SNP [dm6]	G	C	1.899e^-4	0.864	NON_SYNONYMOUS_CODING fs_1_N
X	2592936	X_2592936_SNP [dm3] X_2698903_SNP [dm6]	A	G	1.901e^-4	0.864	SYNONYMOUS_CODING CG2662 UPSTREAM CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5783401	2L_5783401_SNP [dm3] 2L_5783401_SNP [dm6]	T	G	1.916e^-4	0.864	UPSTREAM CG31913 INTRON CG9171
2R	18618277	2R_18618277_SNP [dm3] 2R_22730772_SNP [dm6]	G	A	1.922e^-4	0.864	INTRON jbug
3L	10699635	3L_10699635_SNP [dm3] 3L_10706535_SNP [dm6]	A	C	1.923e^-4	0.864	INTERGENIC
2R	19690410	2R_19690410_SNP [dm3] 2R_23802887_SNP [dm6]	T	C	1.925e^-4	0.864	UTR_3_PRIME CG30177
3R	18392927	3R_18392927_SNP [dm3] 3R_22567205_SNP [dm6]	T	C	1.927e^-4	0.864	INTERGENIC
X	16946999	X_16946999_SNP [dm3] X_17052966_SNP [dm6]	A	T	1.935e^-4	0.864	INTRON CG45002
X	16947018	X_16947018_DEL [dm3] X_17052985_DEL [dm6]	TTGTAATATATTATATATAT...	GG	1.944e^-4	0.864	INTRON CG45002
3L	3768863	3L_3768863_SNP [dm3] 3L_3768863_SNP [dm6]	G	A	1.945e^-4	0.864	INTRON CG32264
3L	5216153	3L_5216153_SNP [dm3] 3L_5223053_SNP [dm6]	T	A	1.947e^-4	0.864	INTRON shep
3R	8151852	3R_8151852_SNP [dm3] 3R_12326130_SNP [dm6]	C	G	1.949e^-4	0.864	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13242522	3R_13242522_SNP [dm3] 3R_17416800_SNP [dm6]	T	A	1.951e^-4	0.864	UPSTREAM CG33333 DOWNSTREAM CG5866 INTERGENIC
2L	7466034	2L_7466034_DEL [dm3] 2L_7466034_DEL [dm6]	TA	T	1.960e^-4	0.864	UPSTREAM CG6055 INTERGENIC
X	5003599	X_5003599_SNP [dm3] X_5109566_SNP [dm6]	G	A	1.964e^-4	0.864	INTRON rg & 1 other
2R	10829763	2R_10829763_SNP [dm3] 2R_14942258_SNP [dm6]	T	A	1.964e^-4	0.864	UPSTREAM CG10257 INTERGENIC
X	20824941	X_20824941_SNP [dm3] X_20953914_SNP [dm6]	T	G	1.968e^-4	0.864	INTERGENIC
2R	18910253	2R_18910253_SNP [dm3] 2R_23022730_SNP [dm6]	A	T	1.972e^-4	0.864	INTRON twi & 1 other
2R	10829659	2R_10829659_SNP [dm3] 2R_14942154_SNP [dm6]	A	G	1.976e^-4	0.864	UPSTREAM CG10257 INTERGENIC
2R	10033080	2R_10033080_SNP [dm3] 2R_14145575_SNP [dm6]	G	C	1.979e^-4	0.864	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19462797	2R_19462797_SNP [dm3] 2R_23575274_SNP [dm6]	A	G	1.986e^-4	0.864	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17649120	2R_17649120_INS [dm3] 2R_21761615_INS [dm6]	T	TGG	1.989e^-4	0.864	INTERGENIC
X	20827598	X_20827598_SNP [dm3] X_20956571_SNP [dm6]	C	A	1.991e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	1782795	2L_1782795_SNP [dm3] 2L_1782795_SNP [dm6]	C	T	1.998e^-4	0.864	INTERGENIC	regulatory region REDfly_CRMs
2R	1190973	2R_1190973_SNP [dm3] 2R_5303468_SNP [dm6]	T	C	2.007e^-4	0.864	INTERGENIC
3R	22777776	3R_22777776_SNP [dm3] 3R_26952054_SNP [dm6]	C	T	2.018e^-4	0.864	INTRON CG6330
2L	14462237	2L_14462237_SNP [dm3] 2L_14462237_SNP [dm6]	C	T	2.021e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	142490	3R_142490_SNP [dm3] 3R_4316768_SNP [dm6]	C	T	2.023e^-4	0.864	SYNONYMOUS_CODING Syt14
3R	18229505	3R_18229505_SNP [dm3] 3R_22403783_SNP [dm6]	T	A	2.027e^-4	0.864	INTRON CG13856
2L	5578163	2L_5578163_SNP [dm3] 2L_5578163_SNP [dm6]	T	C	2.038e^-4	0.864	INTERGENIC
X	17269599	X_17269599_SNP [dm3] X_17375566_SNP [dm6]	A	G	2.040e^-4	0.864	INTERGENIC
X	16997266	X_16997266_SNP [dm3] X_17103233_SNP [dm6]	G	C	2.041e^-4	0.864	SYNONYMOUS_CODING CG4991
2R	10829821	2R_10829821_SNP [dm3] 2R_14942316_SNP [dm6]	T	G	2.041e^-4	0.864	UPSTREAM CG10257 INTERGENIC
3L	9666882	3L_9666882_SNP [dm3] 3L_9673782_SNP [dm6]	G	T	2.046e^-4	0.864	INTRON fry
2L	4278870	2L_4278870_SNP [dm3] 2L_4278870_SNP [dm6]	A	T	2.055e^-4	0.864	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
3L	13221927	3L_13221927_SNP [dm3] 3L_13228827_SNP [dm6]	A	G	2.060e^-4	0.864	UTR_5_PRIME caps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4994484	2L_4994484_SNP [dm3] 2L_4994484_SNP [dm6]	G	C	2.061e^-4	0.864	INTRON Rtnl1
X	10751502	X_10751502_SNP [dm3] X_10857469_SNP [dm6]	G	T	2.062e^-4	0.864	UPSTREAM CG2186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13384648	2R_13384648_SNP [dm3] 2R_17497143_SNP [dm6]	G	A	2.069e^-4	0.864	INTERGENIC
3L	14345663	3L_14345663_SNP [dm3] 3L_14352563_SNP [dm6]	A	G	2.071e^-4	0.864	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14795233	2R_14795233_SNP [dm3] 2R_18907728_SNP [dm6]	T	C	2.076e^-4	0.864	INTRON sano	TF binding site mE1_TFBS_cad
2L	4162420	2L_4162420_SNP [dm3] 2L_4162420_SNP [dm6]	C	T	2.077e^-4	0.864	INTERGENIC
2L	4162422	2L_4162422_INS [dm3] 2L_4162422_INS [dm6]	C	CAT	2.077e^-4	0.864	INTERGENIC
3R	26490513	3R_26490513_SNP [dm3] 3R_30664791_SNP [dm6]	C	A	2.086e^-4	0.864	EXON CR45191
X	4236958	X_4236958_SNP [dm3] X_4342925_SNP [dm6]	C	T	2.094e^-4	0.864	INTRON norpA
2L	17300403	2L_17300403_SNP [dm3] 2L_17300403_SNP [dm6]	A	T	2.099e^-4	0.864	INTERGENIC
3L	12374713	3L_12374713_SNP [dm3] 3L_12381613_SNP [dm6]	A	C	2.100e^-4	0.864	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	7281505	2L_7281505_SNP [dm3] 2L_7281505_SNP [dm6]	T	A	2.102e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7281591	2L_7281591_SNP [dm3] 2L_7281591_SNP [dm6]	T	A	2.102e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	935789	2L_935789_SNP [dm3] 2L_935789_SNP [dm6]	G	A	2.102e^-4	0.864	INTRON CG4341	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15960340	3L_15960340_SNP [dm3] 3L_15967240_SNP [dm6]	A	G	2.102e^-4	0.864	SYNONYMOUS_CODING l_3_72Ab UPSTREAM CG10516	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
3L	14386551	3L_14386551_SNP [dm3] 3L_14393451_SNP [dm6]	A	T	2.108e^-4	0.864	INTERGENIC
2L	22606258	2L_22606258_SNP [dm3] 2L_22713526_SNP [dm6]	G	C	2.115e^-4	0.864	INTRON CG40006
X	16611761	X_16611761_SNP [dm3] X_16717728_SNP [dm6]	C	T	2.118e^-4	0.864	INTRON CG34325
2R	6230497	2R_6230497_SNP [dm3] 2R_10342992_SNP [dm6]	A	C	2.123e^-4	0.864	INTRON CG42732
2L	12228866	2L_12228866_SNP [dm3] 2L_12228866_SNP [dm6]	G	T	2.130e^-4	0.864	INTRON aret
3L	1142361	3L_1142361_SNP [dm3] 3L_1142361_SNP [dm6]	G	A	2.132e^-4	0.864	SYNONYMOUS_CODING bab2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	7920270	X_7920270_SNP [dm3] X_8026237_SNP [dm6]	T	G	2.136e^-4	0.864	UTR_3_PRIME Tbh
X	20824832	X_20824832_SNP [dm3] X_20953805_SNP [dm6]	T	C	2.138e^-4	0.864	INTERGENIC
3L	21901406	3L_21901406_SNP [dm3] 3L_21908306_SNP [dm6]	A	G	2.143e^-4	0.864	INTRON mub
2R	18618302	2R_18618302_SNP [dm3] 2R_22730797_SNP [dm6]	G	T	2.143e^-4	0.864	INTRON jbug
3L	18092024	3L_18092024_SNP [dm3] 3L_18098924_SNP [dm6]	A	T	2.145e^-4	0.864	INTRON CG13698
2L	7267154	2L_7267154_INS [dm3] 2L_7267154_INS [dm6]	T	TT	2.152e^-4	0.864	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4157901	2L_4157901_SNP [dm3] 2L_4157901_SNP [dm6]	C	T	2.153e^-4	0.864	INTERGENIC
2R	12073845	2R_12073845_DEL [dm3] 2R_16186340_DEL [dm6]	CGC	C	2.156e^-4	0.864	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1346500	2R_1346500_SNP [dm3] 2R_5458995_SNP [dm6]	G	C	2.159e^-4	0.864	INTERGENIC	transposable element FlyBase
2R	3165301	2R_3165301_SNP [dm3] 2R_7277796_SNP [dm6]	G	A	2.159e^-4	0.864	SYNONYMOUS_CODING Br140 UPSTREAM Incenp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1379654	2R_1379654_SNP [dm3] 2R_5492149_SNP [dm6]	G	A	2.164e^-4	0.864	INTRON CG30440
3R	10056203	3R_10056203_INS [dm3] 3R_14230481_INS [dm6]	A	AA	2.165e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12374818	3L_12374818_SNP [dm3] 3L_12381718_SNP [dm6]	C	T	2.173e^-4	0.864	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	12502809	2L_12502809_SNP [dm3] 2L_12502809_SNP [dm6]	T	G	2.176e^-4	0.864	INTRON bun
2R	9674954	2R_9674954_SNP [dm3] 2R_13787449_SNP [dm6]	A	T	2.182e^-4	0.864	UTR_3_PRIME Cpr50Ca
2R	14979736	2R_14979736_SNP [dm3] 2R_19092231_SNP [dm6]	A	G	2.185e^-4	0.864	INTRON 5-HT1A	insulator Insulator_Class_II.mE01
3R	8209837	3R_8209837_SNP [dm3] 3R_12384115_SNP [dm6]	T	C	2.187e^-4	0.864	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8151847	3R_8151847_SNP [dm3] 3R_12326125_SNP [dm6]	C	T	2.188e^-4	0.864	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4131966	2L_4131966_SNP [dm3] 2L_4131966_SNP [dm6]	G	T	2.188e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17085652	3R_17085652_SNP [dm3] 3R_21259930_SNP [dm6]	T	G	2.196e^-4	0.864	INTRON ETHR	TF binding site mE1_TFBS_cad
2R	15540421	2R_15540421_SNP [dm3] 2R_19652916_SNP [dm6]	T	A	2.204e^-4	0.864	UPSTREAM CR44213 DOWNSTREAM Ir56e EXON CR44212
2R	14791646	2R_14791646_DEL [dm3] 2R_18904141_DEL [dm6]	TAAG	T	2.210e^-4	0.864	INTRON sano	TF binding site BDTNP1_TFBS_dl
2R	6110949	2R_6110949_INS [dm3] 2R_10223444_INS [dm6]	G	GG	2.214e^-4	0.864	UTR_5_PRIME Hr46 INTRON Hr46 & 1 other
3L	5984434	3L_5984434_SNP [dm3] 3L_5991334_SNP [dm6]	A	T	2.215e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	2749861	3R_2749861_SNP [dm3] 3R_6924139_SNP [dm6]	T	A	2.217e^-4	0.864	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7281509	2L_7281509_SNP [dm3] 2L_7281509_SNP [dm6]	A	T	2.219e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1782819	2L_1782819_SNP [dm3] 2L_1782819_SNP [dm6]	C	A	2.226e^-4	0.864	INTERGENIC	regulatory region REDfly_CRMs
2L	17778667	2L_17778667_SNP [dm3] 2L_17778667_SNP [dm6]	G	T	2.229e^-4	0.864	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14456857	2R_14456857_SNP [dm3] 2R_18569352_SNP [dm6]	T	A	2.233e^-4	0.864	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	20824937	X_20824937_SNP [dm3] X_20953910_SNP [dm6]	T	G	2.244e^-4	0.864	INTERGENIC
2L	7702077	2L_7702077_SNP [dm3] 2L_7702077_SNP [dm6]	A	G	2.247e^-4	0.864	UPSTREAM Tep2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14252115	2L_14252115_SNP [dm3] 2L_14252115_SNP [dm6]	T	C	2.249e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_bab1
X	2776016	X_2776016_SNP [dm3] X_2881983_SNP [dm6]	C	T	2.254e^-4	0.864	DOWNSTREAM CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl
3R	14818959	3R_14818959_SNP [dm3] 3R_18993237_SNP [dm6]	G	A	2.256e^-4	0.864	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	17157277	X_17157277_SNP [dm3] X_17263244_SNP [dm6]	T	C	2.260e^-4	0.864	INTRON f
2L	12087409	2L_12087409_SNP [dm3] 2L_12087409_SNP [dm6]	G	T	2.267e^-4	0.864	DOWNSTREAM CR44592 EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5513044	3L_5513044_SNP [dm3] 3L_5519944_SNP [dm6]	C	T	2.269e^-4	0.864	INTRON Lkr
3R	14497882	3R_14497882_SNP [dm3] 3R_18672160_SNP [dm6]	T	G	2.275e^-4	0.864	DOWNSTREAM CG31230 INTRON CG7702
3R	26490529	3R_26490529_SNP [dm3] 3R_30664807_SNP [dm6]	C	A	2.280e^-4	0.864	EXON CR45191
2R	15067740	2R_15067740_SNP [dm3] 2R_19180235_SNP [dm6]	T	C	2.281e^-4	0.864	INTRON hppy
3L	23465097	3L_23465097_SNP [dm3] 3L_23471997_SNP [dm6]	G	A	2.284e^-4	0.864	INTERGENIC	transposable element FlyBase
X	1221892	X_1221892_SNP [dm3] X_1327859_SNP [dm6]	T	C	2.292e^-4	0.864	SYNONYMOUS_CODING fs_1_N
X	7547548	X_7547548_SNP [dm3] X_7653515_SNP [dm6]	C	T	2.298e^-4	0.864	INTRON ct
X	20607560	X_20607560_INS [dm3] X_20736533_INS [dm6]	C	CCAA	2.312e^-4	0.864	UPSTREAM CG1324 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4351432	3L_4351432_INS [dm3] 3L_4351432_INS [dm6]	C	CATTTATGTTAC...	2.312e^-4	0.864	INTRON Cip4
2R	17868698	2R_17868698_SNP [dm3] 2R_21981193_SNP [dm6]	T	C	2.320e^-4	0.864	DOWNSTREAM Gr58a INTERGENIC
3L	3776762	3L_3776762_SNP [dm3] 3L_3776762_SNP [dm6]	C	T	2.324e^-4	0.864	INTRON CG32264
2R	9662372	2R_9662372_SNP [dm3] 2R_13774867_SNP [dm6]	T	C	2.328e^-4	0.864	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3R	20807100	3R_20807100_INS [dm3] 3R_24981378_INS [dm6]	G	GG	2.331e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	17150308	3L_17150308_SNP [dm3] 3L_17157208_SNP [dm6]	C	G	2.332e^-4	0.864	INTRON Rbp6
2L	20423664	2L_20423664_SNP [dm3] 2L_20423664_SNP [dm6]	G	A	2.333e^-4	0.864	DOWNSTREAM Arpc2 INTRON CG15130
3L	7803403	3L_7803403_DEL [dm3] 3L_7810303_DEL [dm6]	ATG	A	2.337e^-4	0.864	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3376194	X_3376194_SNP [dm3] X_3482161_SNP [dm6]	T	C	2.339e^-4	0.864	START_GAINED CG10804 UTR_5_PRIME CG10804 UPSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16997254	X_16997254_SNP [dm3] X_17103221_SNP [dm6]	C	T	2.340e^-4	0.864	SYNONYMOUS_CODING CG4991
3R	11918675	3R_11918675_SNP [dm3] 3R_16092953_SNP [dm6]	A	C	2.341e^-4	0.864	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18814290	2L_18814290_SNP [dm3] 2L_18814290_SNP [dm6]	C	T	2.344e^-4	0.864	DOWNSTREAM CG17325 & 1 other INTERGENIC
2R	12073891	2R_12073891_SNP [dm3] 2R_16186386_SNP [dm6]	T	A	2.353e^-4	0.864	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16926175	2R_16926175_SNP [dm3] 2R_21038670_SNP [dm6]	G	A	2.362e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11572182	3R_11572182_SNP [dm3] 3R_15746460_SNP [dm6]	T	C	2.363e^-4	0.864	DOWNSTREAM CG4520 INTERGENIC
2R	15570066	2R_15570066_SNP [dm3] 2R_19682561_SNP [dm6]	C	G	2.365e^-4	0.864	UTR_3_PRIME CG34198 DOWNSTREAM CR44505	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10431187	2L_10431187_SNP [dm3] 2L_10431187_SNP [dm6]	A	T	2.373e^-4	0.864	UPSTREAM TfIIB & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17293823	3R_17293823_SNP [dm3] 3R_21468101_SNP [dm6]	T	C	2.377e^-4	0.864	INTERGENIC
3R	2101021	3R_2101021_SNP [dm3] 3R_6275299_SNP [dm6]	T	C	2.379e^-4	0.864	INTERGENIC
2L	10061086	2L_10061086_SNP [dm3] 2L_10061086_SNP [dm6]	A	G	2.382e^-4	0.864	DOWNSTREAM Pen INTRON Spn31A
X	20827329	X_20827329_INS [dm3] X_20956302_INS [dm6]	G	GG	2.391e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16836656	2R_16836656_SNP [dm3] 2R_20949151_SNP [dm6]	A	T	2.393e^-4	0.865	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14931884	2R_14931884_SNP [dm3] 2R_19044379_SNP [dm6]	C	T	2.404e^-4	0.866	INTERGENIC
X	2775990	X_2775990_SNP [dm3] X_2881957_SNP [dm6]	G	C	2.412e^-4	0.866	DOWNSTREAM CG14418 INTRON kirre
X	1362717	X_1362717_SNP [dm3] X_1468684_SNP [dm6]	C	T	2.412e^-4	0.866	UTR_3_PRIME CG14777 DOWNSTREAM CG32808 INTRON CG14778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2668763	2L_2668763_SNP [dm3] 2L_2668763_SNP [dm6]	C	T	2.425e^-4	0.866	INTERGENIC
2L	11147936	2L_11147936_SNP [dm3] 2L_11147936_SNP [dm6]	A	T	2.433e^-4	0.866	INTRON Gyc32E
3R	9702871	3R_9702871_SNP [dm3] 3R_13877149_SNP [dm6]	T	C	2.446e^-4	0.866	UTR_5_PRIME E5	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25475887	3R_25475887_SNP [dm3] 3R_29650165_SNP [dm6]	T	A	2.455e^-4	0.866	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
X	17095466	X_17095466_SNP [dm3] X_17201433_SNP [dm6]	A	G	2.458e^-4	0.866	DOWNSTREAM baz INTRON CG8918
3R	7760307	3R_7760307_SNP [dm3] 3R_11934585_SNP [dm6]	G	A	2.466e^-4	0.866	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8209602	3R_8209602_SNP [dm3] 3R_12383880_SNP [dm6]	C	T	2.482e^-4	0.866	UPSTREAM GstD11 INTRON GstD11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	2.482e^-4	0.866	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	2.486e^-4	0.866	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	12072897	2R_12072897_SNP [dm3] 2R_16185392_SNP [dm6]	C	T	2.501e^-4	0.866	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	2777304	X_2777304_SNP [dm3] X_2883271_SNP [dm6]	G	T	2.501e^-4	0.866	NON_SYNONYMOUS_CODING CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	6119168	X_6119168_SNP [dm3] X_6225135_SNP [dm6]	C	G	2.502e^-4	0.866	UTR_5_PRIME sqh UPSTREAM sqh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1422547	3L_1422547_SNP [dm3] 3L_1422547_SNP [dm6]	T	C	2.509e^-4	0.866	SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16946914	X_16946914_DEL [dm3] X_17052881_DEL [dm6]	TTTTTTATCACATCTAT...	T	2.511e^-4	0.866	INTRON CG45002
2R	9680600	2R_9680600_SNP [dm3] 2R_13793095_SNP [dm6]	G	T	2.521e^-4	0.866	DOWNSTREAM CR43811 INTERGENIC
3R	26088854	3R_26088854_SNP [dm3] 3R_30263132_SNP [dm6]	G	C	2.522e^-4	0.866	INTERGENIC
X	8100480	X_8100480_SNP [dm3] X_8206447_SNP [dm6]	C	T	2.527e^-4	0.866	INTRON sdt
2L	4897394	2L_4897394_SNP [dm3] 2L_4897394_SNP [dm6]	T	C	2.530e^-4	0.866	INTRON CG3036	TF binding site mE1_TFBS_sens
2L	935319	2L_935319_DEL [dm3] 2L_935319_DEL [dm6]	CGATTTCATTTCTCTAGA...	C	2.534e^-4	0.866	INTRON CG4341	TF binding site mE1_TFBS_Trl
X	2375229	X_2375229_SNP [dm3] X_2481196_SNP [dm6]	T	C	2.547e^-4	0.866	SYNONYMOUS_CODING trol
3L	15960157	3L_15960157_SNP [dm3] 3L_15967057_SNP [dm6]	G	A	2.547e^-4	0.866	SYNONYMOUS_CODING l_3_72Ab	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	19573583	2R_19573583_INS [dm3] 2R_23686060_INS [dm6]	T	TCCT	2.548e^-4	0.866	UPSTREAM l_2_efl INTRON St3
3R	8191720	3R_8191720_SNP [dm3] 3R_12365998_SNP [dm6]	T	C	2.549e^-4	0.866	UPSTREAM GstD10 DOWNSTREAM GstD9 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5715132	2L_5715132_SNP [dm3] 2L_5715132_SNP [dm6]	A	C	2.551e^-4	0.866	UPSTREAM CR44818 DOWNSTREAM CG14007 INTERGENIC
2R	6004666	2R_6004666_SNP [dm3] 2R_10117161_SNP [dm6]	T	C	2.552e^-4	0.866	UTR_3_PRIME Pfk UPSTREAM dmpd DOWNSTREAM Pfk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4840590	3L_4840590_SNP [dm3] 3L_4840590_SNP [dm6]	G	C	2.555e^-4	0.866	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	3696520	2R_3696520_SNP [dm3] 2R_7809015_SNP [dm6]	G	C	2.556e^-4	0.866	SYNONYMOUS_CODING sax
3R	10313658	3R_10313658_SNP [dm3] 3R_14487936_SNP [dm6]	T	A	2.559e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17292492	2L_17292492_SNP [dm3] 2L_17292492_SNP [dm6]	A	T	2.559e^-4	0.866	UPSTREAM CG6380 INTERGENIC
2R	3346539	2R_3346539_SNP [dm3] 2R_7459034_SNP [dm6]	T	C	2.561e^-4	0.866	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17156863	3L_17156863_SNP [dm3] 3L_17163763_SNP [dm6]	T	C	2.574e^-4	0.866	INTRON Rbp6
2L	7843629	2L_7843629_SNP [dm3] 2L_7843629_SNP [dm6]	T	A	2.579e^-4	0.866	INTERGENIC
3L	6358668	3L_6358668_SNP [dm3] 3L_6365568_SNP [dm6]	C	T	2.585e^-4	0.866	INTERGENIC
2L	18807088	2L_18807088_SNP [dm3] 2L_18807088_SNP [dm6]	C	T	2.587e^-4	0.866	UPSTREAM CR43817 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4748333	3L_4748333_SNP [dm3] 3L_4748333_SNP [dm6]	G	C	2.601e^-4	0.866	INTRON RhoGEF64C
3L	12643975	3L_12643975_SNP [dm3] 3L_12650875_SNP [dm6]	C	T	2.604e^-4	0.866	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	1661261	2L_1661261_SNP [dm3] 2L_1661261_SNP [dm6]	C	T	2.606e^-4	0.866	INTRON chinmo
2L	4994605	2L_4994605_SNP [dm3] 2L_4994605_SNP [dm6]	A	C	2.618e^-4	0.866	SYNONYMOUS_CODING Rtnl1
2R	18541337	2R_18541337_SNP [dm3] 2R_22653832_SNP [dm6]	G	A	2.622e^-4	0.866	NON_SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other
2R	18618292	2R_18618292_SNP [dm3] 2R_22730787_SNP [dm6]	T	G	2.632e^-4	0.866	INTRON jbug
3L	1910277	3L_1910277_SNP [dm3] 3L_1910277_SNP [dm6]	G	A	2.633e^-4	0.866	UPSTREAM CG1887 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	18404542	2R_18404542_SNP [dm3] 2R_22517037_SNP [dm6]	A	G	2.634e^-4	0.866	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18572580	2R_18572580_SNP [dm3] 2R_22685075_SNP [dm6]	G	A	2.641e^-4	0.866	UTR_3_PRIME ppa DOWNSTREAM ppa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25617567	3R_25617567_SNP [dm3] 3R_29791845_SNP [dm6]	G	T	2.646e^-4	0.866	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18436653	2R_18436653_SNP [dm3] 2R_22549148_SNP [dm6]	G	A	2.646e^-4	0.866	UPSTREAM CG6018 INTRON px
3R	9665219	3R_9665219_SNP [dm3] 3R_13839497_SNP [dm6]	G	A	2.652e^-4	0.866	SYNONYMOUS_CODING CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9781807	3R_9781807_SNP [dm3] 3R_13956085_SNP [dm6]	A	C	2.659e^-4	0.866	INTERGENIC
3R	21226958	3R_21226958_SNP [dm3] 3R_25401236_SNP [dm6]	G	A	2.668e^-4	0.866	UPSTREAM Muc96D INTRON Fur1
X	5809265	X_5809265_SNP [dm3] X_5915232_SNP [dm6]	G	A	2.669e^-4	0.866	UTR_5_PRIME CG3011 DOWNSTREAM CR44108 INTRON CG3011
2L	11147952	2L_11147952_SNP [dm3] 2L_11147952_SNP [dm6]	A	C	2.672e^-4	0.866	INTRON Gyc32E
2L	10061090	2L_10061090_SNP [dm3] 2L_10061090_SNP [dm6]	G	T	2.683e^-4	0.866	DOWNSTREAM Pen INTRON Spn31A
2R	1193468	2R_1193468_SNP [dm3] 2R_5305963_SNP [dm6]	G	A	2.687e^-4	0.866	INTERGENIC
2L	22594273	2L_22594273_SNP [dm3] 2L_22701541_SNP [dm6]	T	A	2.690e^-4	0.866	INTRON CG40006
3L	7803402	3L_7803402_SNP [dm3] 3L_7810302_SNP [dm6]	T	A	2.691e^-4	0.866	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10033073	2R_10033073_SNP [dm3] 2R_14145568_SNP [dm6]	C	T	2.696e^-4	0.866	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	7177636	3L_7177636_SNP [dm3] 3L_7184536_SNP [dm6]	C	G	2.696e^-4	0.866	INTRON Dscam2
2R	14925369	2R_14925369_SNP [dm3] 2R_19037864_SNP [dm6]	C	A	2.696e^-4	0.866	INTERGENIC
2L	4159247	2L_4159247_SNP [dm3] 2L_4159247_SNP [dm6]	G	C	2.697e^-4	0.866	INTERGENIC
3R	8202532	3R_8202532_SNP [dm3] 3R_12376810_SNP [dm6]	G	T	2.711e^-4	0.866	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
3L	11515743	3L_11515743_SNP [dm3] 3L_11522643_SNP [dm6]	A	G	2.713e^-4	0.866	UTR_5_PRIME CG11714 DOWNSTREAM Mob2
2L	5276754	2L_5276754_DEL [dm3] 2L_5276754_DEL [dm6]	ATGCT	A	2.739e^-4	0.866	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4722599	3L_4722599_SNP [dm3] 3L_4722599_SNP [dm6]	A	C	2.755e^-4	0.866	INTRON RhoGEF64C
X	5443755	X_5443755_SNP [dm3] X_5549722_SNP [dm6]	T	A	2.756e^-4	0.866	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20826352	X_20826352_SNP [dm3] X_20955325_SNP [dm6]	A	G	2.756e^-4	0.866	INTERGENIC
3R	14973884	3R_14973884_SNP [dm3] 3R_19148162_SNP [dm6]	T	G	2.767e^-4	0.866	UPSTREAM Ppcs & 1 other DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17683187	2R_17683187_SNP [dm3] 2R_21795682_SNP [dm6]	G	T	2.770e^-4	0.866	UPSTREAM CG34204 INTERGENIC
2R	7365822	2R_7365822_SNP [dm3] 2R_11478317_SNP [dm6]	C	A	2.778e^-4	0.866	INTRON inv	TF binding site BDTNP1_TFBS_dl
2L	9073085	2L_9073085_DEL [dm3] 2L_9073085_DEL [dm6]	CC	C	2.778e^-4	0.866	INTERGENIC
X	8403354	X_8403354_SNP [dm3] X_8509321_SNP [dm6]	C	T	2.779e^-4	0.866	UPSTREAM CG33181 INTRON CG33181
3R	8151848	3R_8151848_SNP [dm3] 3R_12326126_SNP [dm6]	T	G	2.782e^-4	0.866	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14709059	3R_14709059_MNP [dm3] 3R_18883337_MNP [dm6]	CTA	TAT	2.785e^-4	0.866	INTERGENIC
2R	12088792	2R_12088792_SNP [dm3] 2R_16201287_SNP [dm6]	A	G	2.791e^-4	0.866	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18964625	X_18964625_SNP [dm3] X_19070592_SNP [dm6]	A	T	2.798e^-4	0.866	INTERGENIC
2L	7581572	2L_7581572_SNP [dm3] 2L_7581572_SNP [dm6]	A	T	2.802e^-4	0.866	UPSTREAM Spn28B INTERGENIC
2L	5276768	2L_5276768_SNP [dm3] 2L_5276768_SNP [dm6]	C	A	2.805e^-4	0.866	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10836873	3L_10836873_SNP [dm3] 3L_10843773_SNP [dm6]	A	G	2.809e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	13956677	3L_13956677_SNP [dm3] 3L_13963577_SNP [dm6]	C	T	2.810e^-4	0.866	SYNONYMOUS_CODING Meics DOWNSTREAM CG32137	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12849636	2R_12849636_SNP [dm3] 2R_16962131_SNP [dm6]	C	T	2.822e^-4	0.866	INTERGENIC
2R	12348012	2R_12348012_SNP [dm3] 2R_16460507_SNP [dm6]	C	T	2.823e^-4	0.866	INTERGENIC
3L	3775818	3L_3775818_SNP [dm3] 3L_3775818_SNP [dm6]	C	G	2.825e^-4	0.866	INTRON CG32264
X	21428296	X_21428296_SNP [dm3] X_21557269_SNP [dm6]	G	A	2.827e^-4	0.866	INTERGENIC
2R	9675690	2R_9675690_DEL [dm3] 2R_13788185_DEL [dm6]	TAT	T	2.827e^-4	0.866	DOWNSTREAM Cpr50Ca INTERGENIC
3L	5062617	3L_5062617_SNP [dm3] 3L_5062617_SNP [dm6]	C	A	2.829e^-4	0.866	INTRON Con
2R	1357501	2R_1357501_SNP [dm3] 2R_5469996_SNP [dm6]	C	A	2.833e^-4	0.866	INTRON CG30440	transposable element FlyBase
3R	18701583	3R_18701583_SNP [dm3] 3R_22875861_SNP [dm6]	G	C	2.835e^-4	0.866	INTERGENIC
2R	10303172	2R_10303172_SNP [dm3] 2R_14415667_SNP [dm6]	A	T	2.848e^-4	0.866	INTERGENIC
3L	6617330	3L_6617330_SNP [dm3] 3L_6624230_SNP [dm6]	G	C	2.856e^-4	0.866	UTR_5_PRIME GluRIA	TF binding site mE1_TFBS_Trl
X	6126570	X_6126570_SNP [dm3] X_6232537_SNP [dm6]	A	T	2.873e^-4	0.866	UTR_3_PRIME CG14446
3R	15203838	3R_15203838_INS [dm3] 3R_19378116_INS [dm6]	T	TCTTT	2.875e^-4	0.866	UPSTREAM CG31245 INTRON Ino80	TF binding site mE1_TFBS_sens
X	16758873	X_16758873_SNP [dm3] X_16864840_SNP [dm6]	T	C	2.879e^-4	0.866	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	14027634	2L_14027634_SNP [dm3] 2L_14027634_SNP [dm6]	G	C	2.882e^-4	0.866	SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2718726	2R_2718726_SNP [dm3] 2R_6831221_SNP [dm6]	C	T	2.890e^-4	0.866	DOWNSTREAM CG34215 INTRON CG15236
2R	8178002	2R_8178002_SNP [dm3] 2R_12290497_SNP [dm6]	T	C	2.894e^-4	0.866	UPSTREAM CG42700 INTRON CG42700
2R	18227883	2R_18227883_SNP [dm3] 2R_22340378_SNP [dm6]	G	T	2.901e^-4	0.866	INTRON Liprin-gamma	TF binding site mE1_TFBS_chinmo
2R	18907642	2R_18907642_SNP [dm3] 2R_23020119_SNP [dm6]	G	A	2.904e^-4	0.866	INTRON twi & 1 other
2R	17649071	2R_17649071_SNP [dm3] 2R_21761566_SNP [dm6]	A	G	2.904e^-4	0.866	INTERGENIC
2R	6622608	2R_6622608_INS [dm3] 2R_10735103_INS [dm6]	A	ACGAGCGGAATTCATATGCT...	2.907e^-4	0.866	UPSTREAM CG7220 INTRON CG7220
2L	20415841	2L_20415841_SNP [dm3] 2L_20415841_SNP [dm6]	G	A	2.908e^-4	0.866	SYNONYMOUS_CODING CG10949	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9680269	2R_9680269_SNP [dm3] 2R_13792764_SNP [dm6]	T	A	2.914e^-4	0.866	DOWNSTREAM CR43811 INTERGENIC
2R	14925206	2R_14925206_SNP [dm3] 2R_19037701_SNP [dm6]	G	T	2.918e^-4	0.866	INTERGENIC
2L	9346926	2L_9346926_SNP [dm3] 2L_9346926_SNP [dm6]	G	A	2.923e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3668129	2L_3668129_SNP [dm3] 2L_3668129_SNP [dm6]	T	C	2.923e^-4	0.866	NON_SYNONYMOUS_CODING Sfp24Ba DOWNSTREAM CG42463 INTRON CG34340
3R	25481484	3R_25481484_SNP [dm3] 3R_29655762_SNP [dm6]	T	G	2.933e^-4	0.866	INTRON Dop1R2
2L	10061183	2L_10061183_SNP [dm3] 2L_10061183_SNP [dm6]	A	T	2.946e^-4	0.866	INTRON Spn31A
3L	5604337	3L_5604337_SNP [dm3] 3L_5611237_SNP [dm6]	A	G	2.949e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
X	11801527	X_11801527_SNP [dm3] X_11907494_SNP [dm6]	C	T	2.955e^-4	0.866	UTR_3_PRIME pot UPSTREAM CG43156 DOWNSTREAM pot	TF binding site mE1_TFBS_zfh1
2L	3608340	2L_3608340_SNP [dm3] 2L_3608340_SNP [dm6]	C	A	2.960e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19931402	X_19931402_SNP [dm3] X_20037369_SNP [dm6]	G	A	2.963e^-4	0.866	INTRON Dop2R
2R	13143384	2R_13143384_SNP [dm3] 2R_17255879_SNP [dm6]	A	T	2.966e^-4	0.866	UPSTREAM CR43660 DOWNSTREAM CG43272 INTRON mbl
X	16946993	X_16946993_SNP [dm3] X_17052960_SNP [dm6]	T	A	2.974e^-4	0.866	INTRON CG45002
3R	16872165	3R_16872165_SNP [dm3] 3R_21046443_SNP [dm6]	A	G	2.977e^-4	0.866	SYNONYMOUS_CODING CG31207 UPSTREAM CG31189	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9509560	2R_9509560_SNP [dm3] 2R_13622055_SNP [dm6]	G	C	2.979e^-4	0.866	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7581603	2L_7581603_SNP [dm3] 2L_7581603_SNP [dm6]	A	G	2.985e^-4	0.866	UPSTREAM Spn28B INTERGENIC
X	10751261	X_10751261_SNP [dm3] X_10857228_SNP [dm6]	G	C	2.999e^-4	0.866	NON_SYNONYMOUS_CODING sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19990021	2R_19990021_SNP [dm3] 2R_24102498_SNP [dm6]	C	A	3.000e^-4	0.866	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9018106	2R_9018106_SNP [dm3] 2R_13130601_SNP [dm6]	G	A	3.008e^-4	0.866	INTRON CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14925202	2R_14925202_SNP [dm3] 2R_19037697_SNP [dm6]	A	G	3.010e^-4	0.866	INTERGENIC
2L	8790314	2L_8790314_SNP [dm3] 2L_8790314_SNP [dm6]	C	G	3.018e^-4	0.866	INTERGENIC
3R	9083772	3R_9083772_SNP [dm3] 3R_13258050_SNP [dm6]	C	T	3.025e^-4	0.866	INTRON Ace
2L	14574598	2L_14574598_SNP [dm3] 2L_14574598_SNP [dm6]	A	C	3.028e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9667036	3L_9667036_SNP [dm3] 3L_9673936_SNP [dm6]	T	C	3.029e^-4	0.866	INTRON fry
2L	5718112	2L_5718112_SNP [dm3] 2L_5718112_SNP [dm6]	T	A	3.035e^-4	0.866	DOWNSTREAM CG11149 & 1 other INTERGENIC
3L	2545655	3L_2545655_SNP [dm3] 3L_2545655_SNP [dm6]	C	A	3.036e^-4	0.866	INTRON Spn
2L	9399199	2L_9399199_SNP [dm3] 2L_9399199_SNP [dm6]	T	G	3.039e^-4	0.866	INTRON Shawl
X	20827108	X_20827108_SNP [dm3] X_20956081_SNP [dm6]	A	G	3.040e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6119175	X_6119175_SNP [dm3] X_6225142_SNP [dm6]	T	C	3.043e^-4	0.866	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6130922	2R_6130922_SNP [dm3] 2R_10243417_SNP [dm6]	T	C	3.066e^-4	0.866	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
3L	20693363	3L_20693363_SNP [dm3] 3L_20700263_SNP [dm6]	A	G	3.069e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	20191666	2R_20191666_SNP [dm3] 2R_24304143_SNP [dm6]	C	A	3.069e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs
2R	3343930	2R_3343930_SNP [dm3] 2R_7456425_SNP [dm6]	G	C	3.076e^-4	0.866	SYNONYMOUS_CODING Inos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7843462	2L_7843462_SNP [dm3] 2L_7843462_SNP [dm6]	A	C	3.090e^-4	0.866	INTERGENIC
3L	18034768	3L_18034768_SNP [dm3] 3L_18041668_SNP [dm6]	C	A	3.090e^-4	0.866	UTR_3_PRIME CG32192 INTRON Eip75B	TF binding site mE1_TFBS_zfh1
2L	22595141	2L_22595141_SNP [dm3] 2L_22702409_SNP [dm6]	A	G	3.096e^-4	0.866	INTRON CG40006
2R	793883	2R_793883_SNP [dm3] 2R_4906378_SNP [dm6]	G	T	3.111e^-4	0.866	INTRON CG44102
2R	14925225	2R_14925225_SNP [dm3] 2R_19037720_SNP [dm6]	A	G	3.115e^-4	0.866	INTERGENIC
2R	18910225	2R_18910225_SNP [dm3] 2R_23022702_SNP [dm6]	T	A	3.126e^-4	0.866	INTRON twi & 1 other
X	14654576	X_14654576_SNP [dm3] X_14760543_SNP [dm6]	C	A	3.140e^-4	0.866	INTRON CG15890
3L	6388950	3L_6388950_SNP [dm3] 3L_6395850_SNP [dm6]	G	A	3.160e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9702489	3R_9702489_SNP [dm3] 3R_13876767_SNP [dm6]	C	G	3.164e^-4	0.866	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2649493	3L_2649493_SNP [dm3] 3L_2649493_SNP [dm6]	C	T	3.166e^-4	0.866	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2L	8790262	2L_8790262_SNP [dm3] 2L_8790262_SNP [dm6]	C	A	3.171e^-4	0.866	INTERGENIC
2R	18914580	2R_18914580_SNP [dm3] 2R_23027057_SNP [dm6]	A	C	3.171e^-4	0.866	INTRON twi & 1 other
3R	26115713	3R_26115713_SNP [dm3] 3R_30289991_SNP [dm6]	A	C	3.176e^-4	0.866	INTRON hdc
2R	1192507	2R_1192507_SNP [dm3] 2R_5305002_SNP [dm6]	T	G	3.179e^-4	0.866	INTERGENIC	transposable element FlyBase
3R	22313229	3R_22313229_SNP [dm3] 3R_26487507_SNP [dm6]	T	C	3.187e^-4	0.866	INTRON plum	TF binding site mE1_TFBS_inv
2L	9200038	2L_9200038_SNP [dm3] 2L_9200038_SNP [dm6]	C	T	3.189e^-4	0.866	INTRON tai
2L	10273956	2L_10273956_SNP [dm3] 2L_10273956_SNP [dm6]	T	C	3.190e^-4	0.866	INTRON Utx
2R	9166500	2R_9166500_INS [dm3] 2R_13278995_INS [dm6]	A	AA	3.191e^-4	0.866	INTRON Dh31-R
3L	12178798	3L_12178798_SNP [dm3] 3L_12185698_SNP [dm6]	G	A	3.193e^-4	0.866	UPSTREAM CG6910 INTRON CG6910
3L	2182882	3L_2182882_SNP [dm3] 3L_2182882_SNP [dm6]	C	T	3.194e^-4	0.866	INTERGENIC
3R	8071278	3R_8071278_SNP [dm3] 3R_12245556_SNP [dm6]	G	C	3.194e^-4	0.866	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	5014255	X_5014255_DEL [dm3] X_5120222_DEL [dm6]	ACCA	A	3.197e^-4	0.866	INTRON rg & 1 other
3R	26490384	3R_26490384_SNP [dm3] 3R_30664662_SNP [dm6]	G	A	3.204e^-4	0.866	UPSTREAM CR45191 INTERGENIC
3L	7063391	3L_7063391_SNP [dm3] 3L_7070291_SNP [dm6]	G	A	3.219e^-4	0.866	INTRON CG8641
3R	14497884	3R_14497884_SNP [dm3] 3R_18672162_SNP [dm6]	A	T	3.229e^-4	0.866	DOWNSTREAM CG31230 INTRON CG7702
2R	14363639	2R_14363639_SNP [dm3] 2R_18476134_SNP [dm6]	G	T	3.230e^-4	0.866	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19690403	2R_19690403_SNP [dm3] 2R_23802880_SNP [dm6]	A	C	3.250e^-4	0.866	UTR_3_PRIME CG30177
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	3.250e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6949671	X_6949671_SNP [dm3] X_7055638_SNP [dm6]	A	T	3.254e^-4	0.866	INTRON CG12541	TF binding site BDTNP1_TFBS_prd
3R	4991494	3R_4991494_INS [dm3] 3R_9165772_INS [dm6]	A	ACAAACGTTACAA...	3.255e^-4	0.866	INTRON pum
X	18037066	X_18037066_SNP [dm3] X_18143033_SNP [dm6]	T	G	3.258e^-4	0.866	INTERGENIC
X	12029600	X_12029600_SNP [dm3] X_12135567_SNP [dm6]	A	G	3.283e^-4	0.866	INTRON Ten-a
2L	9418466	2L_9418466_SNP [dm3] 2L_9418466_SNP [dm6]	A	T	3.283e^-4	0.866	INTRON Mco1
2L	9067740	2L_9067740_INS [dm3] 2L_9067740_INS [dm6]	T	TGT	3.289e^-4	0.866	INTRON CG31708
3L	16811946	3L_16811946_SNP [dm3] 3L_16818846_SNP [dm6]	A	T	3.297e^-4	0.866	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11263435	X_11263435_SNP [dm3] X_11369402_SNP [dm6]	C	T	3.301e^-4	0.866	UPSTREAM dlg1 DOWNSTREAM Tim8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26490751	3R_26490751_DEL [dm3] 3R_30665029_DEL [dm6]	CTCTTTTCGCTG...	C	3.301e^-4	0.866	EXON CR45191
2R	10035519	2R_10035519_SNP [dm3] 2R_14148014_SNP [dm6]	T	A	3.302e^-4	0.866	DOWNSTREAM Rcd1 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	5098641	2L_5098641_SNP [dm3] 2L_5098641_SNP [dm6]	T	G	3.307e^-4	0.866	UTR_3_PRIME CG4230 DOWNSTREAM CG8680 & 1 other
2R	20201801	2R_20201801_SNP [dm3] 2R_24314278_SNP [dm6]	T	G	3.313e^-4	0.866	INTERGENIC
X	12029755	X_12029755_SNP [dm3] X_12135722_SNP [dm6]	C	T	3.321e^-4	0.866	INTRON Ten-a
2L	2303106	2L_2303106_SNP [dm3] 2L_2303106_SNP [dm6]	A	T	3.326e^-4	0.866	INTERGENIC
X	12029788	X_12029788_SNP [dm3] X_12135755_SNP [dm6]	A	G	3.333e^-4	0.866	INTRON Ten-a
3L	6388942	3L_6388942_SNP [dm3] 3L_6395842_SNP [dm6]	G	A	3.338e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26867813	3R_26867813_SNP [dm3] 3R_31042091_SNP [dm6]	C	T	3.338e^-4	0.866	INTRON CanA1	TF binding site BDTNP1_TFBS_twi
2L	12773385	2L_12773385_SNP [dm3] 2L_12773385_SNP [dm6]	C	T	3.339e^-4	0.866	INTERGENIC
3R	4991472	3R_4991472_SNP [dm3] 3R_9165750_SNP [dm6]	G	A	3.339e^-4	0.866	INTRON pum
2L	5265091	2L_5265091_SNP [dm3] 2L_5265091_SNP [dm6]	T	C	3.343e^-4	0.866	SYNONYMOUS_CODING Cyp4ac1 INTRON tkv
3L	16811931	3L_16811931_SNP [dm3] 3L_16818831_SNP [dm6]	G	A	3.346e^-4	0.866	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1932956	2L_1932956_SNP [dm3] 2L_1932956_SNP [dm6]	G	T	3.348e^-4	0.866	INTRON CG7337
2R	9235544	2R_9235544_INS [dm3] 2R_13348039_INS [dm6]	T	TT	3.350e^-4	0.866	INTRON CR44206
X	16947000	X_16947000_SNP [dm3] X_17052967_SNP [dm6]	T	C	3.352e^-4	0.866	INTRON CG45002
2R	10052504	2R_10052504_SNP [dm3] 2R_14164999_SNP [dm6]	T	G	3.353e^-4	0.866	UPSTREAM CG8323 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12762406	3R_12762406_SNP [dm3] 3R_16936684_SNP [dm6]	A	C	3.354e^-4	0.866	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21859853	3R_21859853_SNP [dm3] 3R_26034131_SNP [dm6]	T	C	3.359e^-4	0.866	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
X	20824950	X_20824950_SNP [dm3] X_20953923_SNP [dm6]	C	T	3.363e^-4	0.866	INTERGENIC
2L	17300392	2L_17300392_SNP [dm3] 2L_17300392_SNP [dm6]	A	G	3.366e^-4	0.866	INTERGENIC
X	2825243	X_2825243_SNP [dm3] X_2931210_SNP [dm6]	C	G	3.368e^-4	0.866	SYNONYMOUS_CODING CG32793 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26115814	3R_26115814_SNP [dm3] 3R_30290092_SNP [dm6]	G	C	3.370e^-4	0.866	INTRON hdc
3L	20867610	3L_20867610_SNP [dm3] 3L_20874510_SNP [dm6]	C	A	3.370e^-4	0.866	INTRON CG32432
3L	7803370	3L_7803370_SNP [dm3] 3L_7810270_SNP [dm6]	T	A	3.371e^-4	0.866	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	277382	3L_277382_SNP [dm3] 3L_277382_SNP [dm6]	G	C	3.373e^-4	0.866	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15618944	3R_15618944_SNP [dm3] 3R_19793222_SNP [dm6]	C	T	3.376e^-4	0.866	DOWNSTREAM bnl INTERGENIC
3L	17149989	3L_17149989_SNP [dm3] 3L_17156889_SNP [dm6]	T	C	3.386e^-4	0.866	INTRON Rbp6
2R	15411935	2R_15411935_DEL [dm3] 2R_19524430_DEL [dm6]	AA	A	3.388e^-4	0.866	UTR_3_PRIME sm
3R	8485694	3R_8485694_SNP [dm3] 3R_12659972_SNP [dm6]	C	A	3.394e^-4	0.866	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
2R	8334285	2R_8334285_SNP [dm3] 2R_12446780_SNP [dm6]	C	A	3.394e^-4	0.866	INTRON Dyb
3L	12922817	3L_12922817_SNP [dm3] 3L_12929717_SNP [dm6]	C	T	3.398e^-4	0.866	INTERGENIC
2R	20018788	2R_20018788_SNP [dm3] 2R_24131265_SNP [dm6]	T	C	3.403e^-4	0.866	INTRON tamo
2L	17778625	2L_17778625_MNP [dm3] 2L_17778625_MNP [dm6]	GTT	TCG	3.414e^-4	0.866	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1541842	2R_1541842_SNP [dm3] 2R_5654337_SNP [dm6]	C	T	3.426e^-4	0.866	SYNONYMOUS_CODING CG1344	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4242340	3L_4242340_SNP [dm3] 3L_4242340_SNP [dm6]	C	T	3.429e^-4	0.866	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13192097	3R_13192097_SNP [dm3] 3R_17366375_SNP [dm6]	A	G	3.431e^-4	0.866	UPSTREAM beat-IIa INTERGENIC
2R	15067861	2R_15067861_SNP [dm3] 2R_19180356_SNP [dm6]	A	C	3.438e^-4	0.866	INTRON hppy
3R	4326804	3R_4326804_SNP [dm3] 3R_8501082_SNP [dm6]	A	T	3.440e^-4	0.866	INTERGENIC
3L	3986843	3L_3986843_SNP [dm3] 3L_3986843_SNP [dm6]	T	C	3.445e^-4	0.866	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	12605189	3L_12605189_SNP [dm3] 3L_12612089_SNP [dm6]	G	T	3.446e^-4	0.866	INTRON caup
3R	10358501	3R_10358501_SNP [dm3] 3R_14532779_SNP [dm6]	A	T	3.448e^-4	0.866	INTRON Pde6
2R	18618874	2R_18618874_SNP [dm3] 2R_22731369_SNP [dm6]	C	T	3.452e^-4	0.866	SYNONYMOUS_CODING jbug INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26869104	3R_26869104_SNP [dm3] 3R_31043382_SNP [dm6]	T	A	3.453e^-4	0.866	SPLICE_SITE_REGION CanA1 INTRON CanA1
3R	8185434	3R_8185434_SNP [dm3] 3R_12359712_SNP [dm6]	T	A	3.455e^-4	0.866	UPSTREAM CG4115 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	1353252	2R_1353252_SNP [dm3] 2R_5465747_SNP [dm6]	A	G	3.457e^-4	0.866	INTERGENIC	transposable element FlyBase
2L	9201831	2L_9201831_SNP [dm3] 2L_9201831_SNP [dm6]	G	T	3.463e^-4	0.866	INTRON tai
2R	9763431	2R_9763431_SNP [dm3] 2R_13875926_SNP [dm6]	G	T	3.468e^-4	0.866	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3R	7882064	3R_7882064_SNP [dm3] 3R_12056342_SNP [dm6]	C	T	3.470e^-4	0.866	INTERGENIC
3R	13161573	3R_13161573_SNP [dm3] 3R_17335851_SNP [dm6]	C	T	3.475e^-4	0.866	INTRON beat-IIa
X	9934533	X_9934533_SNP [dm3] X_10040500_SNP [dm6]	C	A	3.475e^-4	0.866	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
2R	19937565	2R_19937565_SNP [dm3] 2R_24050042_SNP [dm6]	C	T	3.476e^-4	0.866	SYNONYMOUS_CODING sei
3L	4352840	3L_4352840_SNP [dm3] 3L_4352840_SNP [dm6]	C	T	3.498e^-4	0.866	INTRON Cip4
2R	10014170	2R_10014170_SNP [dm3] 2R_14126665_SNP [dm6]	A	C	3.500e^-4	0.866	INTRON Prosap
3R	8485769	3R_8485769_SNP [dm3] 3R_12660047_SNP [dm6]	G	A	3.503e^-4	0.866	INTRON CG6225	TF binding site mE1_TFBS_cad
2L	12520649	2L_12520649_SNP [dm3] 2L_12520649_SNP [dm6]	G	T	3.507e^-4	0.866	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_ttk
3L	11865059	3L_11865059_SNP [dm3] 3L_11871959_SNP [dm6]	G	A	3.507e^-4	0.866	UPSTREAM CG5906 INTRON CG44837
3L	14134613	3L_14134613_SNP [dm3] 3L_14141513_SNP [dm6]	T	A	3.510e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs
X	11287988	X_11287988_SNP [dm3] X_11393955_SNP [dm6]	T	G	3.512e^-4	0.866	INTRON dlg1
3R	10363949	3R_10363949_SNP [dm3] 3R_14538227_SNP [dm6]	A	T	3.514e^-4	0.866	INTRON Pde6
2L	1932873	2L_1932873_INS [dm3] 2L_1932873_INS [dm6]	C	CCATTTGCAAGCAC...	3.521e^-4	0.866	INTRON CG7337
3L	7976018	3L_7976018_SNP [dm3] 3L_7982918_SNP [dm6]	A	T	3.524e^-4	0.866	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	3.524e^-4	0.866	INTRON Liprin-gamma
2R	14925224	2R_14925224_SNP [dm3] 2R_19037719_SNP [dm6]	G	T	3.529e^-4	0.866	INTERGENIC
X	21457297	X_21457297_SNP [dm3] X_21586270_SNP [dm6]	T	C	3.532e^-4	0.866	INTERGENIC
2R	15940793	2R_15940793_SNP [dm3] 2R_20053288_SNP [dm6]	G	T	3.536e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	12514684	3R_12514684_SNP [dm3] 3R_16688962_SNP [dm6]	C	T	3.558e^-4	0.866	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	10822897	3L_10822897_SNP [dm3] 3L_10829797_SNP [dm6]	T	A	3.562e^-4	0.866	INTERGENIC
2L	16774431	2L_16774431_SNP [dm3] 2L_16774431_SNP [dm6]	G	A	3.566e^-4	0.866	INTRON Mhc
2L	10550745	2L_10550745_SNP [dm3] 2L_10550745_SNP [dm6]	G	T	3.569e^-4	0.866	INTRON Trim9
3R	4309239	3R_4309239_SNP [dm3] 3R_8483517_SNP [dm6]	T	A	3.570e^-4	0.866	INTERGENIC
2L	7581564	2L_7581564_SNP [dm3] 2L_7581564_SNP [dm6]	T	A	3.570e^-4	0.866	UPSTREAM Spn28B INTERGENIC
2R	14456869	2R_14456869_SNP [dm3] 2R_18569364_SNP [dm6]	C	G	3.572e^-4	0.866	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17095462	X_17095462_SNP [dm3] X_17201429_SNP [dm6]	A	G	3.572e^-4	0.866	DOWNSTREAM baz INTRON CG8918
3R	18905420	3R_18905420_SNP [dm3] 3R_23079698_SNP [dm6]	A	G	3.572e^-4	0.866	INTRON CG13830
X	18037055	X_18037055_INS [dm3] X_18143022_INS [dm6]	A	AGAAG	3.575e^-4	0.866	INTERGENIC
2R	8114548	2R_8114548_SNP [dm3] 2R_12227043_SNP [dm6]	C	G	3.584e^-4	0.866	UPSTREAM CG8854 INTRON CG8854
2R	8531884	2R_8531884_SNP [dm3] 2R_12644379_SNP [dm6]	A	G	3.593e^-4	0.866	INTRON CG8785	TF binding site mE1_TFBS_cad
X	8508204	X_8508204_SNP [dm3] X_8614171_SNP [dm6]	G	C	3.605e^-4	0.866	INTERGENIC
X	12029602	X_12029602_SNP [dm3] X_12135569_SNP [dm6]	T	A	3.613e^-4	0.866	INTRON Ten-a
2L	18805390	2L_18805390_SNP [dm3] 2L_18805390_SNP [dm6]	G	A	3.614e^-4	0.866	UPSTREAM CG43814 DOWNSTREAM CR43817 INTERGENIC
3R	15322549	3R_15322549_SNP [dm3] 3R_19496827_SNP [dm6]	A	T	3.623e^-4	0.866	INTRON Dys
3L	4293728	3L_4293728_SNP [dm3] 3L_4293728_SNP [dm6]	C	T	3.627e^-4	0.866	DOWNSTREAM dyl & 1 other INTERGENIC
2L	18809561	2L_18809561_SNP [dm3] 2L_18809561_SNP [dm6]	C	T	3.634e^-4	0.866	UTR_3_PRIME CG10570 & 1 other DOWNSTREAM CG10570 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26760791	3R_26760791_SNP [dm3] 3R_30935069_SNP [dm6]	T	C	3.653e^-4	0.866	DOWNSTREAM CG15549 INTERGENIC
2L	18531201	2L_18531201_SNP [dm3] 2L_18531201_SNP [dm6]	A	G	3.661e^-4	0.866	SPLICE_SITE_REGION CG10211 DOWNSTREAM Pde11 INTRON CG10211
2R	12145321	2R_12145321_SNP [dm3] 2R_16257816_SNP [dm6]	T	A	3.663e^-4	0.866	INTRON CngA
2L	10572944	2L_10572944_SNP [dm3] 2L_10572944_SNP [dm6]	C	T	3.666e^-4	0.866	INTRON Trim9
2L	9514711	2L_9514711_SNP [dm3] 2L_9514711_SNP [dm6]	A	G	3.667e^-4	0.866	INTRON CG33298
3R	14973689	3R_14973689_SNP [dm3] 3R_19147967_SNP [dm6]	A	C	3.668e^-4	0.866	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19413599	2R_19413599_SNP [dm3] 2R_23526076_SNP [dm6]	T	C	3.671e^-4	0.866	INTRON mi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11925531	2L_11925531_SNP [dm3] 2L_11925531_SNP [dm6]	A	G	3.671e^-4	0.866	INTRON Pde1c
2L	9348159	2L_9348159_INS [dm3] 2L_9348159_INS [dm6]	A	CGCAGG	3.673e^-4	0.866	DOWNSTREAM CR44802 INTERGENIC
3L	17148792	3L_17148792_SNP [dm3] 3L_17155692_SNP [dm6]	T	G	3.684e^-4	0.866	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	17295014	2L_17295014_SNP [dm3] 2L_17295014_SNP [dm6]	G	C	3.685e^-4	0.866	INTERGENIC
2R	16583141	2R_16583141_SNP [dm3] 2R_20695636_SNP [dm6]	G	C	3.692e^-4	0.866	INTERGENIC
2R	17927399	2R_17927399_SNP [dm3] 2R_22039894_SNP [dm6]	G	A	3.695e^-4	0.866	UPSTREAM CG34370 INTERGENIC
X	11299768	X_11299768_SNP [dm3] X_11405735_SNP [dm6]	T	C	3.698e^-4	0.866	SYNONYMOUS_CODING dlg1	TF binding site mE1_TFBS_HSA
2L	4892570	2L_4892570_SNP [dm3] 2L_4892570_SNP [dm6]	A	G	3.700e^-4	0.866	UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6689209	2R_6689209_SNP [dm3] 2R_10801704_SNP [dm6]	T	A	3.701e^-4	0.866	INTRON wde	TF binding site mE1_TFBS_cad
3R	8151838	3R_8151838_SNP [dm3] 3R_12326116_SNP [dm6]	C	T	3.702e^-4	0.866	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	22039175	X_22039175_SNP [dm3] X_22637339_SNP [dm6]	C	T	3.715e^-4	0.866	INTERGENIC
3L	4836492	3L_4836492_SNP [dm3] 3L_4836492_SNP [dm6]	C	G	3.721e^-4	0.866	INTERGENIC
2R	14456859	2R_14456859_SNP [dm3] 2R_18569354_SNP [dm6]	C	T	3.739e^-4	0.866	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15940507	2R_15940507_SNP [dm3] 2R_20053002_SNP [dm6]	G	A	3.743e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6732826	X_6732826_SNP [dm3] X_6838793_SNP [dm6]	T	A	3.746e^-4	0.866	UTR_3_PRIME CG14435 DOWNSTREAM nonC & 1 other
3L	14134535	3L_14134535_SNP [dm3] 3L_14141435_SNP [dm6]	T	A	3.749e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	19919068	3R_19919068_SNP [dm3] 3R_24093346_SNP [dm6]	G	A	3.752e^-4	0.866	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9348781	2L_9348781_SNP [dm3] 2L_9348781_SNP [dm6]	A	C	3.756e^-4	0.866	UPSTREAM CG43350 EXON CR44802
2R	9962819	2R_9962819_SNP [dm3] 2R_14075314_SNP [dm6]	C	T	3.760e^-4	0.866	INTRON Prosap
3R	22777874	3R_22777874_SNP [dm3] 3R_26952152_SNP [dm6]	G	A	3.760e^-4	0.866	INTRON CG6330	TF binding site BDTNP1_TFBS_da
3L	7803399	3L_7803399_SNP [dm3] 3L_7810299_SNP [dm6]	G	C	3.761e^-4	0.866	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14438471	3L_14438471_SNP [dm3] 3L_14445371_SNP [dm6]	T	A	3.763e^-4	0.866	INTRON bbg	TF binding site mE1_TFBS_inv
2L	4180724	2L_4180724_SNP [dm3] 2L_4180724_SNP [dm6]	T	C	3.763e^-4	0.866	INTERGENIC
2R	16124334	2R_16124334_SNP [dm3] 2R_20236829_SNP [dm6]	G	T	3.764e^-4	0.866	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG44625
X	6953614	X_6953614_SNP [dm3] X_7059581_SNP [dm6]	T	C	3.776e^-4	0.866	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
2L	9079138	2L_9079138_SNP [dm3] 2L_9079138_SNP [dm6]	T	G	3.776e^-4	0.866	INTERGENIC
2L	1932958	2L_1932958_SNP [dm3] 2L_1932958_SNP [dm6]	G	T	3.780e^-4	0.866	INTRON CG7337
2L	5265001	2L_5265001_SNP [dm3] 2L_5265001_SNP [dm6]	T	C	3.783e^-4	0.866	SYNONYMOUS_CODING Cyp4ac1 INTRON tkv
3L	6888627	3L_6888627_SNP [dm3] 3L_6895527_SNP [dm6]	G	T	3.785e^-4	0.866	INTERGENIC
3L	4579749	3L_4579749_SNP [dm3] 3L_4579749_SNP [dm6]	T	G	3.811e^-4	0.866	INTRON CG42540
X	12029591	X_12029591_SNP [dm3] X_12135558_SNP [dm6]	G	T	3.812e^-4	0.866	INTRON Ten-a
3R	15821046	3R_15821046_SNP [dm3] 3R_19995324_SNP [dm6]	T	C	3.818e^-4	0.866	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12279370	3L_12279370_SNP [dm3] 3L_12286270_SNP [dm6]	A	G	3.821e^-4	0.866	INTERGENIC
3L	11766616	3L_11766616_SNP [dm3] 3L_11773516_SNP [dm6]	A	T	3.822e^-4	0.866	DOWNSTREAM mir-956 & 2 others INTERGENIC
2L	3797314	2L_3797314_SNP [dm3] 2L_3797314_SNP [dm6]	T	C	3.824e^-4	0.866	SYNONYMOUS_CODING CG3921
2L	5666822	2L_5666822_SNP [dm3] 2L_5666822_SNP [dm6]	G	A	3.828e^-4	0.866	INTRON Hsp60C
2L	9153097	2L_9153097_SNP [dm3] 2L_9153097_SNP [dm6]	A	C	3.838e^-4	0.866	INTRON CG32982
3L	12922800	3L_12922800_SNP [dm3] 3L_12929700_SNP [dm6]	A	G	3.841e^-4	0.866	INTERGENIC
2L	1635398	2L_1635398_INS [dm3] 2L_1635398_INS [dm6]	A	AC	3.844e^-4	0.866	INTERGENIC
2R	4329527	2R_4329527_SNP [dm3] 2R_8442022_SNP [dm6]	G	T	3.845e^-4	0.866	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
2R	10013160	2R_10013160_SNP [dm3] 2R_14125655_SNP [dm6]	T	C	3.848e^-4	0.866	INTRON Prosap
2R	10025658	2R_10025658_SNP [dm3] 2R_14138153_SNP [dm6]	G	C	3.851e^-4	0.866	INTRON Prosap
X	20681732	X_20681732_INS [dm3] X_20810705_INS [dm6]	A	AA	3.854e^-4	0.866	INTRON shakB
X	16811044	X_16811044_SNP [dm3] X_16917011_SNP [dm6]	G	A	3.860e^-4	0.866	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	16327013	2R_16327013_SNP [dm3] 2R_20439508_SNP [dm6]	A	G	3.868e^-4	0.866	INTRON CG12484
2L	5666844	2L_5666844_SNP [dm3] 2L_5666844_SNP [dm6]	T	G	3.869e^-4	0.866	INTRON Hsp60C
3R	18324842	3R_18324842_INS [dm3] 3R_22499120_INS [dm6]	C	CC	3.871e^-4	0.866	INTRON Octbeta1R
2R	16093098	2R_16093098_SNP [dm3] 2R_20205593_SNP [dm6]	G	C	3.874e^-4	0.866	INTERGENIC
3R	17982277	3R_17982277_SNP [dm3] 3R_22156555_SNP [dm6]	A	T	3.879e^-4	0.866	INTRON SKIP
2R	18905184	2R_18905184_SNP [dm3] 2R_23017661_SNP [dm6]	G	A	3.882e^-4	0.866	INTRON twi & 1 other
2L	8246030	2L_8246030_SNP [dm3] 2L_8246030_SNP [dm6]	G	A	3.890e^-4	0.866	SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	7220794	2R_7220794_SNP [dm3] 2R_11333289_SNP [dm6]	T	C	3.890e^-4	0.866	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16766959	2R_16766959_SNP [dm3] 2R_20879454_SNP [dm6]	G	A	3.892e^-4	0.866	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
X	3243348	X_3243348_SNP [dm3] X_3349315_SNP [dm6]	C	T	3.892e^-4	0.866	UPSTREAM CR44886 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10041749	X_10041749_SNP [dm3] X_10147716_SNP [dm6]	A	C	3.892e^-4	0.866	INTRON CR44894 & 1 other
X	6120045	X_6120045_SNP [dm3] X_6226012_SNP [dm6]	T	A	3.894e^-4	0.866	UTR_5_PRIME CG14446 UPSTREAM sqh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	13193792	3R_13193792_SNP [dm3] 3R_17368070_SNP [dm6]	T	C	3.895e^-4	0.866	INTERGENIC
X	19168211	X_19168211_SNP [dm3] X_19274178_SNP [dm6]	G	A	3.902e^-4	0.866	SYNONYMOUS_CODING CG32537 DOWNSTREAM Vav & 1 other	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5278895	2L_5278895_SNP [dm3] 2L_5278895_SNP [dm6]	G	C	3.904e^-4	0.866	UTR_5_PRIME Bub1 UPSTREAM Bub1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	20611945	X_20611945_SNP [dm3] X_20740918_SNP [dm6]	A	T	3.906e^-4	0.866	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	20807123	3R_20807123_SNP [dm3] 3R_24981401_SNP [dm6]	G	A	3.908e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	15400867	2R_15400867_SNP [dm3] 2R_19513362_SNP [dm6]	G	A	3.909e^-4	0.866	SYNONYMOUS_CODING Ir56d
2L	3908149	2L_3908149_SNP [dm3] 2L_3908149_SNP [dm6]	A	T	3.912e^-4	0.866	INTRON fred
2R	11395094	2R_11395094_SNP [dm3] 2R_15507589_SNP [dm6]	C	T	3.916e^-4	0.866	SYNONYMOUS_CODING Ir52d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10414084	2L_10414084_SNP [dm3] 2L_10414084_SNP [dm6]	C	A	3.933e^-4	0.866	UTR_5_PRIME Klp31E UPSTREAM CG5355 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	8431661	3R_8431661_SNP [dm3] 3R_12605939_SNP [dm6]	A	T	3.939e^-4	0.866	INTERGENIC
2R	20477448	2R_20477448_SNP [dm3] 2R_24589925_SNP [dm6]	C	T	3.957e^-4	0.866	INTRON pio
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	3.958e^-4	0.866	INTRON Spn31A
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	3.958e^-4	0.866	INTRON kek5
3R	8875508	3R_8875508_SNP [dm3] 3R_13049786_SNP [dm6]	G	C	3.961e^-4	0.866	SYNONYMOUS_CODING CG7966 DOWNSTREAM CG31157
3L	350383	3L_350383_SNP [dm3] 3L_350383_SNP [dm6]	A	G	3.965e^-4	0.866	UPSTREAM Ptpmeg INTRON Ptpmeg	TF binding site mE1_TFBS_HSA
2L	4159244	2L_4159244_SNP [dm3] 2L_4159244_SNP [dm6]	G	T	3.966e^-4	0.866	INTERGENIC
3L	10246421	3L_10246421_SNP [dm3] 3L_10253321_SNP [dm6]	G	T	3.974e^-4	0.866	INTERGENIC
3R	8175127	3R_8175127_SNP [dm3] 3R_12349405_SNP [dm6]	T	G	3.975e^-4	0.866	INTRON CG10038
3L	5242249	3L_5242249_SNP [dm3] 3L_5249149_SNP [dm6]	C	G	3.980e^-4	0.866	UPSTREAM shep INTRON shep
3R	21707031	3R_21707031_SNP [dm3] 3R_25881309_SNP [dm6]	G	C	3.984e^-4	0.866	UTR_5_PRIME Tsp96F UPSTREAM SppL	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	6861196	X_6861196_SNP [dm3] X_6967163_SNP [dm6]	C	T	3.988e^-4	0.866	UTR_3_PRIME CG14431 DOWNSTREAM CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1782048	2L_1782048_SNP [dm3] 2L_1782048_SNP [dm6]	C	T	3.995e^-4	0.866	INTERGENIC
3L	15957541	3L_15957541_SNP [dm3] 3L_15964441_SNP [dm6]	T	C	3.997e^-4	0.866	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5443590	2R_5443590_SNP [dm3] 2R_9556085_SNP [dm6]	G	A	4.008e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14134530	3L_14134530_SNP [dm3] 3L_14141430_SNP [dm6]	G	T	4.010e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	17692864	3R_17692864_SNP [dm3] 3R_21867142_SNP [dm6]	T	C	4.012e^-4	0.866	SYNONYMOUS_CODING CG6569 UTR_3_PRIME CG6569 UPSTREAM Cby DOWNSTREAM lsn
X	8440134	X_8440134_SNP [dm3] X_8546101_SNP [dm6]	G	A	4.016e^-4	0.866	SYNONYMOUS_CODING Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4886714	2L_4886714_SNP [dm3] 2L_4886714_SNP [dm6]	A	G	4.016e^-4	0.866	INTERGENIC
3R	10368786	3R_10368786_SNP [dm3] 3R_14543064_SNP [dm6]	A	C	4.017e^-4	0.866	INTRON Pde6
2R	12073089	2R_12073089_SNP [dm3] 2R_16185584_SNP [dm6]	C	T	4.024e^-4	0.866	SYNONYMOUS_CODING CG8441 UPSTREAM clu DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7581609	2L_7581609_SNP [dm3] 2L_7581609_SNP [dm6]	A	T	4.031e^-4	0.866	UPSTREAM Spn28B INTERGENIC
3R	8151742	3R_8151742_SNP [dm3] 3R_12326020_SNP [dm6]	G	A	4.032e^-4	0.866	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7843454	2L_7843454_SNP [dm3] 2L_7843454_SNP [dm6]	A	G	4.032e^-4	0.866	INTERGENIC
3L	14426502	3L_14426502_SNP [dm3] 3L_14433402_SNP [dm6]	C	T	4.032e^-4	0.866	INTRON bbg
3R	15618945	3R_15618945_SNP [dm3] 3R_19793223_SNP [dm6]	C	T	4.033e^-4	0.866	DOWNSTREAM bnl INTERGENIC
3R	8485688	3R_8485688_SNP [dm3] 3R_12659966_SNP [dm6]	C	T	4.037e^-4	0.866	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
3R	17246901	3R_17246901_SNP [dm3] 3R_21421179_SNP [dm6]	C	T	4.044e^-4	0.866	INTRON lbl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7654912	X_7654912_SNP [dm3] X_7760879_SNP [dm6]	T	C	4.048e^-4	0.866	INTERGENIC
2R	9134571	2R_9134571_SNP [dm3] 2R_13247066_SNP [dm6]	C	T	4.053e^-4	0.866	SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10382748	X_10382748_INS [dm3] X_10488715_INS [dm6]	TT	AACAGCC	4.055e^-4	0.866	INTERGENIC
2R	1358734	2R_1358734_SNP [dm3] 2R_5471229_SNP [dm6]	G	C	4.068e^-4	0.866	INTRON CG30440	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	13604889	3R_13604889_SNP [dm3] 3R_17779167_SNP [dm6]	A	T	4.070e^-4	0.866	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
3L	16811948	3L_16811948_SNP [dm3] 3L_16818848_SNP [dm6]	T	C	4.084e^-4	0.866	INTRON nudC & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15939780	2R_15939780_SNP [dm3] 2R_20052275_SNP [dm6]	G	A	4.084e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	17778638	2L_17778638_SNP [dm3] 2L_17778638_SNP [dm6]	A	C	4.092e^-4	0.866	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1325455	2R_1325455_SNP [dm3] 2R_5437950_SNP [dm6]	T	A	4.095e^-4	0.866	INTRON laccase2
2L	7281529	2L_7281529_SNP [dm3] 2L_7281529_SNP [dm6]	C	A	4.097e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7843574	2L_7843574_SNP [dm3] 2L_7843574_SNP [dm6]	G	A	4.099e^-4	0.866	INTERGENIC
3L	7443740	3L_7443740_SNP [dm3] 3L_7450640_SNP [dm6]	A	G	4.103e^-4	0.866	UPSTREAM CG33278 INTRON CG42458	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12374596	3L_12374596_SNP [dm3] 3L_12381496_SNP [dm6]	C	A	4.106e^-4	0.866	INTRON Ncc69	TF binding site mE1_TFBS_inv
2L	6471538	2L_6471538_SNP [dm3] 2L_6471538_SNP [dm6]	G	A	4.106e^-4	0.866	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15389262	2L_15389262_SNP [dm3] 2L_15389262_SNP [dm6]	C	T	4.108e^-4	0.866	INTERGENIC
X	8802093	X_8802093_INS [dm3] X_8908060_INS [dm6]	T	TTT	4.110e^-4	0.866	SPLICE_SITE_REGION rdgA INTRON rdgA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	1980250	3R_1980250_DEL [dm3] 3R_6154528_DEL [dm6]	CAAA	TCT	4.112e^-4	0.866	INTRON CG31559
2L	5709453	2L_5709453_SNP [dm3] 2L_5709453_SNP [dm6]	A	G	4.127e^-4	0.866	UPSTREAM CG7236 INTRON CG7236
2R	1361432	2R_1361432_DEL [dm3] 2R_5473927_DEL [dm6]	TCAGAGTGGGCGT...	T	4.131e^-4	0.866	INTRON CG30440	transposable element FlyBase
3R	14973644	3R_14973644_SNP [dm3] 3R_19147922_SNP [dm6]	T	G	4.132e^-4	0.866	UPSTREAM Ppcs DOWNSTREAM CG5835 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5401079	2R_5401079_SNP [dm3] 2R_9513574_SNP [dm6]	C	A	4.141e^-4	0.866	INTRON brp
X	18037062	X_18037062_DEL [dm3] X_18143029_DEL [dm6]	GAA	G	4.145e^-4	0.866	INTERGENIC
3L	5218836	3L_5218836_SNP [dm3] 3L_5225736_SNP [dm6]	C	T	4.146e^-4	0.866	INTRON shep
2R	15939871	2R_15939871_SNP [dm3] 2R_20052366_SNP [dm6]	C	T	4.148e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9286707	2L_9286707_SNP [dm3] 2L_9286707_SNP [dm6]	A	C	4.150e^-4	0.866	INTRON Ggamma30A
3L	7803401	3L_7803401_SNP [dm3] 3L_7810301_SNP [dm6]	T	C	4.155e^-4	0.866	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16689249	3L_16689249_SNP [dm3] 3L_16696149_SNP [dm6]	C	A	4.164e^-4	0.866	INTRON CR45179 & 2 others
2R	11797580	2R_11797580_SNP [dm3] 2R_15910075_SNP [dm6]	T	G	4.179e^-4	0.866	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2548958	3L_2548958_SNP [dm3] 3L_2548958_SNP [dm6]	T	C	4.180e^-4	0.866	INTRON Spn
2R	12073679	2R_12073679_SNP [dm3] 2R_16186174_SNP [dm6]	A	G	4.188e^-4	0.866	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18396641	3R_18396641_SNP [dm3] 3R_22570919_SNP [dm6]	G	T	4.188e^-4	0.866	INTRON CG33110
2R	1564413	2R_1564413_SNP [dm3] 2R_5676908_SNP [dm6]	G	A	4.188e^-4	0.866	UTR_3_PRIME scaf
3L	6805744	3L_6805744_SNP [dm3] 3L_6812644_SNP [dm6]	C	T	4.192e^-4	0.866	INTERGENIC
2L	448813	2L_448813_SNP [dm3] 2L_448813_SNP [dm6]	T	G	4.195e^-4	0.866	UTR_3_PRIME crq DOWNSTREAM ex
3L	12922790	3L_12922790_SNP [dm3] 3L_12929690_SNP [dm6]	A	T	4.199e^-4	0.866	INTERGENIC
2L	3438723	2L_3438723_SNP [dm3] 2L_3438723_SNP [dm6]	G	T	4.201e^-4	0.866	INTERGENIC
2L	19884967	2L_19884967_SNP [dm3] 2L_19884967_SNP [dm6]	C	T	4.202e^-4	0.866	INTRON sick
2R	19579145	2R_19579145_SNP [dm3] 2R_23691622_SNP [dm6]	G	A	4.209e^-4	0.866	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25349369	3R_25349369_SNP [dm3] 3R_29523647_SNP [dm6]	A	C	4.210e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14925361	2R_14925361_INS [dm3] 2R_19037856_INS [dm6]	A	AA	4.211e^-4	0.866	INTERGENIC
2L	11859454	2L_11859454_SNP [dm3] 2L_11859454_SNP [dm6]	T	G	4.219e^-4	0.866	UTR_5_PRIME Pde1c INTRON Pde1c
2R	14808373	2R_14808373_SNP [dm3] 2R_18920868_SNP [dm6]	C	T	4.224e^-4	0.866	INTRON sano
2R	13774070	2R_13774070_SNP [dm3] 2R_17886565_SNP [dm6]	C	T	4.228e^-4	0.866	DOWNSTREAM PPO1 INTRON Elk
2L	13625522	2L_13625522_DEL [dm3] 2L_13625522_DEL [dm6]	TGCT	T	4.236e^-4	0.866	INTRON kuz
3L	17046469	3L_17046469_SNP [dm3] 3L_17053369_SNP [dm6]	G	T	4.243e^-4	0.866	INTRON rogdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11766718	3L_11766718_SNP [dm3] 3L_11773618_SNP [dm6]	A	G	4.245e^-4	0.866	DOWNSTREAM mir-956 & 2 others INTERGENIC
3R	9383446	3R_9383446_SNP [dm3] 3R_13557724_SNP [dm6]	T	A	4.247e^-4	0.866	INTERGENIC
X	18036925	X_18036925_SNP [dm3] X_18142892_SNP [dm6]	G	A	4.249e^-4	0.866	INTERGENIC
2L	988529	2L_988529_SNP [dm3] 2L_988529_SNP [dm6]	C	T	4.254e^-4	0.866	EXON CR44801	TF binding site mE1_TFBS_chinmo
3L	2254163	3L_2254163_SNP [dm3] 3L_2254163_SNP [dm6]	G	A	4.259e^-4	0.866	INTRON CG1275	TF binding site mE1_TFBS_cad
3L	11753447	3L_11753447_SNP [dm3] 3L_11760347_SNP [dm6]	G	A	4.273e^-4	0.866	INTRON CG6024
2R	8117183	2R_8117183_SNP [dm3] 2R_12229678_SNP [dm6]	G	T	4.274e^-4	0.866	UPSTREAM CG8854 INTERGENIC
3R	8485643	3R_8485643_SNP [dm3] 3R_12659921_SNP [dm6]	T	A	4.278e^-4	0.866	INTRON CG6225	TF binding site mE1_TFBS_cad
2L	1635722	2L_1635722_INS [dm3] 2L_1635722_INS [dm6]	C	CTC	4.282e^-4	0.866	INTERGENIC
X	8403059	X_8403059_SNP [dm3] X_8509026_SNP [dm6]	A	C	4.293e^-4	0.866	UPSTREAM CG33181 INTRON CG33181
3L	14345763	3L_14345763_SNP [dm3] 3L_14352663_SNP [dm6]	A	T	4.299e^-4	0.866	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18975075	2R_18975075_SNP [dm3] 2R_23087552_SNP [dm6]	C	G	4.301e^-4	0.866	NON_SYNONYMOUS_CODING CG13538
2L	1635381	2L_1635381_SNP [dm3] 2L_1635381_SNP [dm6]	G	T	4.316e^-4	0.866	INTERGENIC
2R	16584395	2R_16584395_DEL [dm3] 2R_20696890_DEL [dm6]	CTGAT	C	4.316e^-4	0.866	INTERGENIC
2R	20201879	2R_20201879_SNP [dm3] 2R_24314356_SNP [dm6]	T	C	4.320e^-4	0.866	INTERGENIC
2L	1782654	2L_1782654_SNP [dm3] 2L_1782654_SNP [dm6]	G	A	4.323e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs
2R	14925230	2R_14925230_SNP [dm3] 2R_19037725_SNP [dm6]	A	G	4.325e^-4	0.866	INTERGENIC
2R	11388321	2R_11388321_SNP [dm3] 2R_15500816_SNP [dm6]	T	A	4.334e^-4	0.866	SYNONYMOUS_CODING Ir52a
3R	4563197	3R_4563197_SNP [dm3] 3R_8737475_SNP [dm6]	G	A	4.339e^-4	0.866	SYNONYMOUS_CODING CG9801	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14770136	2R_14770136_SNP [dm3] 2R_18882631_SNP [dm6]	C	T	4.346e^-4	0.866	INTRON sano
2R	2055203	2R_2055203_SNP [dm3] 2R_6167698_SNP [dm6]	C	G	4.350e^-4	0.866	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3L	9725571	3L_9725571_SNP [dm3] 3L_9732471_SNP [dm6]	T	C	4.359e^-4	0.866	INTRON CG6749	TF binding site mE1_TFBS_cad
X	21458882	X_21458882_SNP [dm3] X_21587855_SNP [dm6]	A	T	4.368e^-4	0.866	INTERGENIC
2L	13236971	2L_13236971_SNP [dm3] 2L_13236971_SNP [dm6]	G	A	4.372e^-4	0.866	INTRON CG5867
2R	9796388	2R_9796388_SNP [dm3] 2R_13908883_SNP [dm6]	C	G	4.384e^-4	0.866	INTRON shot
2R	9796405	2R_9796405_SNP [dm3] 2R_13908900_SNP [dm6]	C	T	4.384e^-4	0.866	INTRON shot
X	10153749	X_10153749_DEL [dm3] X_10259716_DEL [dm6]	ACT	A	4.386e^-4	0.866	INTRON CR43959 & 1 other
3L	11695646	3L_11695646_SNP [dm3] 3L_11702546_SNP [dm6]	T	A	4.390e^-4	0.866	INTRON CG11658
X	8100495	X_8100495_SNP [dm3] X_8206462_SNP [dm6]	G	A	4.395e^-4	0.866	INTRON sdt
2L	10822851	2L_10822851_SNP [dm3] 2L_10822851_SNP [dm6]	G	A	4.396e^-4	0.866	DOWNSTREAM CG17134 INTRON Nos
3R	9665051	3R_9665051_SNP [dm3] 3R_13839329_SNP [dm6]	G	T	4.410e^-4	0.866	SYNONYMOUS_CODING CG31495	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18036915	X_18036915_INS [dm3] X_18142882_INS [dm6]	A	AGTTCCAAAGATTTTATTGG...	4.423e^-4	0.866	INTERGENIC
3L	7447890	3L_7447890_SNP [dm3] 3L_7454790_SNP [dm6]	G	C	4.423e^-4	0.866	DOWNSTREAM CG42458 INTERGENIC
2L	1663233	2L_1663233_DEL [dm3] 2L_1663233_DEL [dm6]	TC	T	4.430e^-4	0.866	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11873372	X_11873372_SNP [dm3] X_11979339_SNP [dm6]	G	A	4.432e^-4	0.866	INTRON cac
2L	20406775	2L_20406775_SNP [dm3] 2L_20406775_SNP [dm6]	C	T	4.436e^-4	0.866	INTRON CG10947
2L	20415082	2L_20415082_SNP [dm3] 2L_20415082_SNP [dm6]	T	A	4.437e^-4	0.866	UPSTREAM CG10947 DOWNSTREAM CG10949 INTERGENIC
3R	10056195	3R_10056195_SNP [dm3] 3R_14230473_SNP [dm6]	T	G	4.439e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3916871	3L_3916871_SNP [dm3] 3L_3916871_SNP [dm6]	A	G	4.441e^-4	0.866	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	4.449e^-4	0.866	INTERGENIC
X	18037007	X_18037007_SNP [dm3] X_18142974_SNP [dm6]	G	C	4.452e^-4	0.866	INTERGENIC
2L	17778720	2L_17778720_SNP [dm3] 2L_17778720_SNP [dm6]	G	C	4.470e^-4	0.866	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1781765	2L_1781765_SNP [dm3] 2L_1781765_SNP [dm6]	A	G	4.474e^-4	0.866	INTERGENIC
3L	304051	3L_304051_SNP [dm3] 3L_304051_SNP [dm6]	G	A	4.475e^-4	0.866	UTR_3_PRIME RhoGEF3 DOWNSTREAM RhoGEF3	TF binding site mE1_TFBS_zfh1
2R	10829644	2R_10829644_SNP [dm3] 2R_14942139_SNP [dm6]	G	A	4.479e^-4	0.866	UPSTREAM CG10257 INTERGENIC
2L	7011957	2L_7011957_SNP [dm3] 2L_7011957_SNP [dm6]	A	C	4.479e^-4	0.866	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	12594411	X_12594411_INS [dm3] X_12700378_INS [dm6]	T	TAT	4.482e^-4	0.866	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2303253	2L_2303253_SNP [dm3] 2L_2303253_SNP [dm6]	A	C	4.485e^-4	0.866	INTERGENIC
3L	3209673	3L_3209673_SNP [dm3] 3L_3209673_SNP [dm6]	T	C	4.485e^-4	0.866	SYNONYMOUS_CODING gry UPSTREAM CG32270 & 1 other	TF binding site mE1_TFBS_chinmo
2R	16364638	2R_16364638_SNP [dm3] 2R_20477133_SNP [dm6]	A	C	4.489e^-4	0.866	INTRON CG12484
3R	20712459	3R_20712459_SNP [dm3] 3R_24886737_SNP [dm6]	T	G	4.494e^-4	0.866	INTRON CG31121
2R	9931296	2R_9931296_SNP [dm3] 2R_14043791_SNP [dm6]	C	T	4.496e^-4	0.866	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	15821036	3R_15821036_SNP [dm3] 3R_19995314_SNP [dm6]	C	T	4.502e^-4	0.866	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12071026	3R_12071026_SNP [dm3] 3R_16245304_SNP [dm6]	G	T	4.503e^-4	0.866	INTRON tara	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22447533	3R_22447533_SNP [dm3] 3R_26621811_SNP [dm6]	T	C	4.503e^-4	0.866	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
X	18037061	X_18037061_SNP [dm3] X_18143028_SNP [dm6]	T	A	4.514e^-4	0.866	INTERGENIC
3L	13222325	3L_13222325_SNP [dm3] 3L_13229225_SNP [dm6]	A	G	4.517e^-4	0.866	INTRON caps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	6119463	X_6119463_INS [dm3] X_6225430_INS [dm6]	T	TA	4.533e^-4	0.866	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
2L	21967473	2L_21967473_SNP [dm3] 2L_21967473_SNP [dm6]	G	A	4.533e^-4	0.866	INTERGENIC
2L	10642123	2L_10642123_SNP [dm3] 2L_10642123_SNP [dm6]	G	T	4.534e^-4	0.866	INTRON CG31872
2R	15540064	2R_15540064_SNP [dm3] 2R_19652559_SNP [dm6]	C	G	4.538e^-4	0.866	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
3R	27135735	3R_27135735_SNP [dm3] 3R_31310013_SNP [dm6]	A	C	4.543e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10320784	2L_10320784_SNP [dm3] 2L_10320784_SNP [dm6]	C	T	4.560e^-4	0.866	INTRON CG5381
3R	18231909	3R_18231909_SNP [dm3] 3R_22406187_SNP [dm6]	T	G	4.564e^-4	0.866	SYNONYMOUS_CODING CG13855
2R	6051098	2R_6051098_SNP [dm3] 2R_10163593_SNP [dm6]	A	T	4.567e^-4	0.866	INTRON KCNQ
3L	8155638	3L_8155638_SNP [dm3] 3L_8162538_SNP [dm6]	A	G	4.573e^-4	0.866	INTRON CG13675
2R	16765740	2R_16765740_SNP [dm3] 2R_20878235_SNP [dm6]	T	C	4.575e^-4	0.866	NON_SYNONYMOUS_CODING Ipk1 INTRON Ipk1
2R	18765850	2R_18765850_SNP [dm3] 2R_22878327_SNP [dm6]	A	T	4.576e^-4	0.866	INTRON PIP5K59B	TF binding site mE1_TFBS_chinmo
3R	15618934	3R_15618934_INS [dm3] 3R_19793212_INS [dm6]	G	GGG	4.592e^-4	0.866	DOWNSTREAM bnl INTERGENIC
3R	8485642	3R_8485642_SNP [dm3] 3R_12659920_SNP [dm6]	C	A	4.597e^-4	0.866	INTRON CG6225	TF binding site mE1_TFBS_cad
2R	10057977	2R_10057977_SNP [dm3] 2R_14170472_SNP [dm6]	C	G	4.607e^-4	0.866	UTR_5_PRIME CG8331 UPSTREAM CG8331 & 1 other DOWNSTREAM CG18324	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12494005	3L_12494005_SNP [dm3] 3L_12500905_SNP [dm6]	C	T	4.616e^-4	0.866	SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
3L	15959500	3L_15959500_SNP [dm3] 3L_15966400_SNP [dm6]	C	A	4.619e^-4	0.866	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7295645	2R_7295645_SNP [dm3] 2R_11408140_SNP [dm6]	C	T	4.621e^-4	0.866	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6183822	3L_6183822_SNP [dm3] 3L_6190722_SNP [dm6]	C	T	4.623e^-4	0.866	SYNONYMOUS_CODING CG7386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17646974	2R_17646974_SNP [dm3] 2R_21759469_SNP [dm6]	T	G	4.626e^-4	0.866	INTERGENIC
2L	20550001	2L_20550001_SNP [dm3] 2L_20550001_SNP [dm6]	T	C	4.627e^-4	0.866	INTERGENIC
2R	10052496	2R_10052496_SNP [dm3] 2R_14164991_SNP [dm6]	T	A	4.636e^-4	0.866	UPSTREAM CG8323 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
X	5872711	X_5872711_SNP [dm3] X_5978678_SNP [dm6]	A	G	4.637e^-4	0.866	INTRON Grip
X	15169593	X_15169593_SNP [dm3] X_15275560_SNP [dm6]	G	T	4.638e^-4	0.866	INTERGENIC
X	3137316	X_3137316_SNP [dm3] X_3243283_SNP [dm6]	T	C	4.649e^-4	0.866	DOWNSTREAM ng1 & 1 other INTRON dnc
2L	12087395	2L_12087395_SNP [dm3] 2L_12087395_SNP [dm6]	T	A	4.651e^-4	0.866	DOWNSTREAM CR44592 EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	6387908	3L_6387908_SNP [dm3] 3L_6394808_SNP [dm6]	A	T	4.654e^-4	0.866	INTERGENIC

By genomic position
Variant impact
Gene name

mn_Life_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results