DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.625e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.029749

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1741 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	718007	2L_718007_INS [dm3] 2L_718007_INS [dm6]	T	TT	7.088e^-8	0.133	INTERGENIC
3R	10175600	3R_10175600_SNP [dm3] 3R_14349878_SNP [dm6]	G	A	1.297e^-6	0.994	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2925636	X_2925636_SNP [dm3] X_3031603_SNP [dm6]	G	A	2.413e^-6	0.994	INTRON kirre
3R	11269036	3R_11269036_SNP [dm3] 3R_15443314_SNP [dm6]	T	A	2.588e^-6	0.994	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
3R	10187299	3R_10187299_SNP [dm3] 3R_14361577_SNP [dm6]	A	G	4.330e^-6	0.994	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	18259275	3L_18259275_SNP [dm3] 3L_18266175_SNP [dm6]	C	T	6.220e^-6	0.994	INTERGENIC
2L	20994435	2L_20994435_SNP [dm3] 2L_20994435_SNP [dm6]	T	A	7.685e^-6	0.994	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	18682008	2R_18682008_SNP [dm3] 2R_22794503_SNP [dm6]	A	G	7.883e^-6	0.994	INTRON CG42260
2R	9638486	2R_9638486_SNP [dm3] 2R_13750981_SNP [dm6]	A	G	7.899e^-6	0.994	INTERGENIC
3R	18614460	3R_18614460_SNP [dm3] 3R_22788738_SNP [dm6]	C	T	7.963e^-6	0.994	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2502057	3L_2502057_SNP [dm3] 3L_2502057_SNP [dm6]	A	T	9.515e^-6	0.994	INTRON CG16758
X	2924664	X_2924664_SNP [dm3] X_3030631_SNP [dm6]	T	A	1.011e^-5	0.994	INTRON kirre
3R	10174595	3R_10174595_SNP [dm3] 3R_14348873_SNP [dm6]	T	A	1.051e^-5	0.994	INTRON NK7.1
2L	548546	2L_548546_SNP [dm3] 2L_548546_SNP [dm6]	G	A	1.232e^-5	0.994	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	14523040	3R_14523040_INS [dm3] 3R_18697318_INS [dm6]	A	AA	1.235e^-5	0.994	INTERGENIC
X	2924670	X_2924670_SNP [dm3] X_3030637_SNP [dm6]	A	C	1.240e^-5	0.994	INTRON kirre
3R	19032608	3R_19032608_SNP [dm3] 3R_23206886_SNP [dm6]	A	T	1.290e^-5	0.994	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	8716511	X_8716511_SNP [dm3] X_8822478_SNP [dm6]	C	A	1.369e^-5	0.994	INTERGENIC
2R	19600120	2R_19600120_SNP [dm3] 2R_23712597_SNP [dm6]	T	C	1.376e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2931492	2R_2931492_SNP [dm3] 2R_7043987_SNP [dm6]	A	G	1.411e^-5	0.994	SYNONYMOUS_CODING Tsp42Ek
3R	13129051	3R_13129051_SNP [dm3] 3R_17303329_SNP [dm6]	C	G	1.418e^-5	0.994	INTERGENIC
3R	10174385	3R_10174385_SNP [dm3] 3R_14348663_SNP [dm6]	G	T	1.535e^-5	0.994	INTRON NK7.1
X	2924663	X_2924663_SNP [dm3] X_3030630_SNP [dm6]	G	C	1.568e^-5	0.994	INTRON kirre
3L	10147805	3L_10147805_SNP [dm3] 3L_10154705_SNP [dm6]	A	G	1.583e^-5	0.994	INTRON dpr10
3R	25440339	3R_25440339_SNP [dm3] 3R_29614617_SNP [dm6]	G	A	1.866e^-5	0.994	INTRON alph
3L	16759510	3L_16759510_SNP [dm3] 3L_16766410_SNP [dm6]	G	C	2.075e^-5	0.994	UTR_5_PRIME Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8716503	X_8716503_SNP [dm3] X_8822470_SNP [dm6]	A	G	2.217e^-5	0.994	INTERGENIC
3R	25301272	3R_25301272_SNP [dm3] 3R_29475550_SNP [dm6]	C	T	2.304e^-5	0.994	INTRON Ptp99A
2L	8982738	2L_8982738_INS [dm3] 2L_8982738_INS [dm6]	T	TT	2.330e^-5	0.994	INTRON CG13101
2L	21725984	2L_21725984_SNP [dm3] 2L_21725984_SNP [dm6]	G	T	2.430e^-5	0.994	INTRON CG31619
3R	21991396	3R_21991396_SNP [dm3] 3R_26165674_SNP [dm6]	C	A	2.439e^-5	0.994	INTERGENIC
3R	25301087	3R_25301087_SNP [dm3] 3R_29475365_SNP [dm6]	T	A	2.459e^-5	0.994	INTRON Ptp99A
2L	5594925	2L_5594925_SNP [dm3] 2L_5594925_SNP [dm6]	C	T	2.551e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16036130	3L_16036130_SNP [dm3] 3L_16043030_SNP [dm6]	C	T	2.793e^-5	0.994	UTR_5_PRIME th UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv
2L	16598505	2L_16598505_SNP [dm3] 2L_16598505_SNP [dm6]	A	C	2.848e^-5	0.994	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6487225	3L_6487225_SNP [dm3] 3L_6494125_SNP [dm6]	A	G	3.169e^-5	0.994	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
3R	11237326	3R_11237326_SNP [dm3] 3R_15411604_SNP [dm6]	A	G	3.180e^-5	0.994	INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21991397	3R_21991397_SNP [dm3] 3R_26165675_SNP [dm6]	G	C	3.185e^-5	0.994	INTERGENIC
3R	10180947	3R_10180947_DEL [dm3] 3R_14355225_DEL [dm6]	TCACAGGACCCCGTTCGTAC...	T	3.194e^-5	0.994	INTRON NK7.1
3L	16874599	3L_16874599_SNP [dm3] 3L_16881499_SNP [dm6]	A	T	3.293e^-5	0.994	INTRON Lmpt
X	4112735	X_4112735_SNP [dm3] X_4218702_SNP [dm6]	C	G	3.326e^-5	0.994	SYNONYMOUS_CODING CG15570	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10147810	3L_10147810_SNP [dm3] 3L_10154710_SNP [dm6]	C	G	3.394e^-5	0.994	INTRON dpr10
3R	25440479	3R_25440479_SNP [dm3] 3R_29614757_SNP [dm6]	G	A	3.419e^-5	0.994	INTRON alph
2L	11175976	2L_11175976_SNP [dm3] 2L_11175976_SNP [dm6]	A	G	3.558e^-5	0.994	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
3R	25439910	3R_25439910_SNP [dm3] 3R_29614188_SNP [dm6]	A	T	3.606e^-5	0.994	INTRON alph
3R	25439940	3R_25439940_SNP [dm3] 3R_29614218_SNP [dm6]	T	C	3.606e^-5	0.994	INTRON alph
3R	25439973	3R_25439973_SNP [dm3] 3R_29614251_SNP [dm6]	A	G	3.606e^-5	0.994	INTRON alph
2L	18159274	2L_18159274_SNP [dm3] 2L_18159274_SNP [dm6]	A	G	3.630e^-5	0.994	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
2R	6853899	2R_6853899_DEL [dm3] 2R_10966394_DEL [dm6]	CCC	C	3.652e^-5	0.994	INTERGENIC
3L	10614333	3L_10614333_SNP [dm3] 3L_10621233_SNP [dm6]	G	T	3.656e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	5594926	2L_5594926_SNP [dm3] 2L_5594926_SNP [dm6]	C	G	3.699e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20994440	2L_20994440_SNP [dm3] 2L_20994440_SNP [dm6]	A	G	3.756e^-5	0.994	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2R	16462737	2R_16462737_SNP [dm3] 2R_20575232_SNP [dm6]	C	A	3.885e^-5	0.994	INTRON qsm
3R	25433107	3R_25433107_SNP [dm3] 3R_29607385_SNP [dm6]	A	T	3.927e^-5	0.994	INTRON alph
2R	6727888	2R_6727888_SNP [dm3] 2R_10840383_SNP [dm6]	A	G	3.959e^-5	0.994	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
3R	10183714	3R_10183714_SNP [dm3] 3R_14357992_SNP [dm6]	C	T	3.994e^-5	0.994	DOWNSTREAM CG31320 INTRON NK7.1
3R	26986359	3R_26986359_SNP [dm3] 3R_31160637_SNP [dm6]	G	A	4.005e^-5	0.994	INTRON Gycbeta100B & 1 other
3R	25301258	3R_25301258_INS [dm3] 3R_29475536_INS [dm6]	A	AA	4.093e^-5	0.994	INTRON Ptp99A
2R	11241959	2R_11241959_SNP [dm3] 2R_15354454_SNP [dm6]	T	C	4.100e^-5	0.994	INTRON unc-5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	14560735	3L_14560735_SNP [dm3] 3L_14567635_SNP [dm6]	G	A	4.141e^-5	0.994	UTR_5_PRIME CG42758
2R	9431748	2R_9431748_SNP [dm3] 2R_13544243_SNP [dm6]	C	T	4.259e^-5	0.994	INTRON CG6145	TF binding site BDTNP1_TFBS_twi
2L	2636261	2L_2636261_SNP [dm3] 2L_2636261_SNP [dm6]	T	C	4.281e^-5	0.994	INTERGENIC
3L	1964504	3L_1964504_SNP [dm3] 3L_1964504_SNP [dm6]	T	C	4.378e^-5	0.994	UTR_5_PRIME SCOT UPSTREAM mv INTRON SCOT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17497137	2R_17497137_SNP [dm3] 2R_21609632_SNP [dm6]	C	T	4.726e^-5	0.994	INTRON CG15673
2R	17095083	2R_17095083_SNP [dm3] 2R_21207578_SNP [dm6]	T	A	4.784e^-5	0.994	INTRON CG44245 & 1 other
3R	25946483	3R_25946483_SNP [dm3] 3R_30120761_SNP [dm6]	T	A	4.812e^-5	0.994	UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10400978	3L_10400978_SNP [dm3] 3L_10407878_SNP [dm6]	A	G	4.915e^-5	0.994	INTERGENIC
3R	24977109	3R_24977109_SNP [dm3] 3R_29151387_SNP [dm6]	T	C	4.943e^-5	0.994	SYNONYMOUS_CODING ligatin DOWNSTREAM Slbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12406122	X_12406122_SNP [dm3] X_12512089_SNP [dm6]	C	A	4.956e^-5	0.994	INTRON CG2556
3L	16740216	3L_16740216_SNP [dm3] 3L_16747116_SNP [dm6]	A	T	4.969e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25436983	3R_25436983_INS [dm3] 3R_29611261_INS [dm6]	C	CCGACTCAGGCGCAGATACA...	5.018e^-5	0.994	INTRON alph	TF binding site mE1_TFBS_chinmo
2L	16598527	2L_16598527_SNP [dm3] 2L_16598527_SNP [dm6]	A	T	5.039e^-5	0.994	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18098277	3R_18098277_SNP [dm3] 3R_22272555_SNP [dm6]	G	T	5.074e^-5	0.994	INTRON SKIP
2R	12604439	2R_12604439_SNP [dm3] 2R_16716934_SNP [dm6]	A	C	5.227e^-5	0.994	INTRON CG30463
2R	17379838	2R_17379838_SNP [dm3] 2R_21492333_SNP [dm6]	T	A	5.257e^-5	0.994	INTRON Fkbp14
3R	22773386	3R_22773386_DEL [dm3] 3R_26947664_DEL [dm6]	GG	G	5.262e^-5	0.994	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16462751	2R_16462751_SNP [dm3] 2R_20575246_SNP [dm6]	C	T	5.301e^-5	0.994	INTRON qsm
2L	939874	2L_939874_SNP [dm3] 2L_939874_SNP [dm6]	G	A	5.371e^-5	0.994	INTRON CG4341
2L	954620	2L_954620_INS [dm3] 2L_954620_INS [dm6]	G	GGGGAAAAG	5.435e^-5	0.994	INTRON CG4341
2R	1370826	2R_1370826_SNP [dm3] 2R_5483321_SNP [dm6]	G	C	5.447e^-5	0.994	INTRON CG30440	transposable element FlyBase
2L	10167726	2L_10167726_SNP [dm3] 2L_10167726_SNP [dm6]	T	C	5.530e^-5	0.994	INTRON CG44153
3L	4970341	3L_4970341_SNP [dm3] 3L_4970341_SNP [dm6]	A	G	5.619e^-5	0.994	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20987276	2R_20987276_SNP [dm3] 2R_25099753_SNP [dm6]	G	C	5.713e^-5	0.994	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10578018	3R_10578018_SNP [dm3] 3R_14752296_SNP [dm6]	T	A	5.881e^-5	0.994	SYNONYMOUS_CODING CG7362 INTRON jvl
X	9071079	X_9071079_SNP [dm3] X_9177046_SNP [dm6]	A	G	6.101e^-5	0.994	UTR_3_PRIME mei-P26
3R	25301047	3R_25301047_SNP [dm3] 3R_29475325_SNP [dm6]	C	T	6.132e^-5	0.994	INTRON Ptp99A
2R	7667019	2R_7667019_SNP [dm3] 2R_11779514_SNP [dm6]	C	G	6.231e^-5	0.994	DOWNSTREAM CG42493 INTRON ths
3L	10151073	3L_10151073_SNP [dm3] 3L_10157973_SNP [dm6]	G	A	6.388e^-5	0.994	INTRON dpr10
2L	717968	2L_717968_SNP [dm3] 2L_717968_SNP [dm6]	C	T	6.567e^-5	0.994	INTERGENIC
2R	6568455	2R_6568455_SNP [dm3] 2R_10680950_SNP [dm6]	C	T	6.631e^-5	0.994	INTRON stan	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16855827	2L_16855827_SNP [dm3] 2L_16855827_SNP [dm6]	A	T	6.693e^-5	0.994	INTRON CG31809	transposable element FlyBase
2R	6859464	2R_6859464_SNP [dm3] 2R_10971959_SNP [dm6]	A	T	6.701e^-5	0.994	INTERGENIC
3R	25947586	3R_25947586_SNP [dm3] 3R_30121864_SNP [dm6]	T	A	6.800e^-5	0.994	DOWNSTREAM CG45072 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	26081019	3R_26081019_SNP [dm3] 3R_30255297_SNP [dm6]	A	G	6.893e^-5	0.994	INTERGENIC
3R	10183658	3R_10183658_SNP [dm3] 3R_14357936_SNP [dm6]	A	T	6.951e^-5	0.994	DOWNSTREAM CG31320 INTRON NK7.1
2L	7039459	2L_7039459_SNP [dm3] 2L_7039459_SNP [dm6]	T	C	7.050e^-5	0.994	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19599999	2R_19599999_SNP [dm3] 2R_23712476_SNP [dm6]	T	C	7.067e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	11964081	3R_11964081_SNP [dm3] 3R_16138359_SNP [dm6]	A	G	7.166e^-5	0.994	INTRON Sb	TF binding site mE1_TFBS_inv
2R	8665783	2R_8665783_SNP [dm3] 2R_12778278_SNP [dm6]	C	T	7.323e^-5	0.994	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	7297381	2L_7297381_SNP [dm3] 2L_7297381_SNP [dm6]	C	G	7.435e^-5	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4640088	3L_4640088_SNP [dm3] 3L_4640088_SNP [dm6]	T	C	7.483e^-5	0.994	INTRON axo
2L	5620659	2L_5620659_SNP [dm3] 2L_5620659_SNP [dm6]	A	C	7.586e^-5	0.994	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	5620663	2L_5620663_DEL [dm3] 2L_5620663_DEL [dm6]	AATTT	A	7.586e^-5	0.994	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
X	9384252	X_9384252_SNP [dm3] X_9490219_SNP [dm6]	C	A	7.717e^-5	0.994	INTRON mgl
3L	9328464	3L_9328464_SNP [dm3] 3L_9335364_SNP [dm6]	G	A	7.837e^-5	0.994	UPSTREAM PGRP-LA INTRON PGRP-LA
X	2924827	X_2924827_SNP [dm3] X_3030794_SNP [dm6]	G	C	7.860e^-5	0.994	INTRON kirre
X	6945848	X_6945848_SNP [dm3] X_7051815_SNP [dm6]	C	T	7.894e^-5	0.994	INTRON CG12541
2R	4232330	2R_4232330_SNP [dm3] 2R_8344825_SNP [dm6]	T	A	7.995e^-5	0.994	INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	25597607	3R_25597607_SNP [dm3] 3R_29771885_SNP [dm6]	G	T	8.083e^-5	0.994	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13418984	3R_13418984_SNP [dm3] 3R_17593262_SNP [dm6]	T	C	8.091e^-5	0.994	INTERGENIC
2L	9068060	2L_9068060_SNP [dm3] 2L_9068060_SNP [dm6]	G	A	8.200e^-5	0.994	INTRON CG31708
2L	7297448	2L_7297448_SNP [dm3] 2L_7297448_SNP [dm6]	G	C	8.218e^-5	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8709155	X_8709155_INS [dm3] X_8815122_INS [dm6]	A	AAA	8.478e^-5	0.994	INTERGENIC
3R	18046849	3R_18046849_SNP [dm3] 3R_22221127_SNP [dm6]	C	T	8.605e^-5	0.994	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16740222	3L_16740222_SNP [dm3] 3L_16747122_SNP [dm6]	G	A	8.606e^-5	0.994	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24725181	3R_24725181_SNP [dm3] 3R_28899459_SNP [dm6]	C	T	8.682e^-5	0.994	INTRON Doa	TF binding site mE1_TFBS_cad
2R	20994370	2R_20994370_DEL [dm3] 2R_25106847_DEL [dm6]	GCGGGTTAGTCG...	G	8.701e^-5	0.994	INTRON lov
X	9384253	X_9384253_SNP [dm3] X_9490220_SNP [dm6]	A	C	8.717e^-5	0.994	INTRON mgl
3L	10147811	3L_10147811_DEL [dm3] 3L_10154711_DEL [dm6]	TT	T	8.733e^-5	0.994	INTRON dpr10
3R	9215501	3R_9215501_SNP [dm3] 3R_13389779_SNP [dm6]	A	T	8.744e^-5	0.994	INTRON CCHa2
2R	20994030	2R_20994030_SNP [dm3] 2R_25106507_SNP [dm6]	T	C	8.824e^-5	0.994	INTRON lov
3R	10428627	3R_10428627_SNP [dm3] 3R_14602905_SNP [dm6]	A	G	8.837e^-5	0.994	UPSTREAM stumps INTRON stumps
3R	25946474	3R_25946474_SNP [dm3] 3R_30120752_SNP [dm6]	C	T	8.852e^-5	0.994	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20600464	3R_20600464_SNP [dm3] 3R_24774742_SNP [dm6]	A	C	8.854e^-5	0.994	INTRON CG42331
2L	8985987	2L_8985987_SNP [dm3] 2L_8985987_SNP [dm6]	T	A	8.948e^-5	0.994	UTR_3_PRIME rost
2R	21025471	2R_21025471_INS [dm3] 2R_25137948_INS [dm6]	A	ACTCGA	9.080e^-5	0.994	DOWNSTREAM CG43106 INTRON lov
X	14062266	X_14062266_SNP [dm3] X_14168233_SNP [dm6]	T	A	9.157e^-5	0.994	INTERGENIC
X	2924894	X_2924894_SNP [dm3] X_3030861_SNP [dm6]	A	G	9.167e^-5	0.994	INTRON kirre
3R	25301278	3R_25301278_SNP [dm3] 3R_29475556_SNP [dm6]	C	T	9.198e^-5	0.994	INTRON Ptp99A
3L	16765807	3L_16765807_SNP [dm3] 3L_16772707_SNP [dm6]	G	T	9.233e^-5	0.994	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
3L	16861153	3L_16861153_SNP [dm3] 3L_16868053_SNP [dm6]	G	C	9.281e^-5	0.994	INTRON Lmpt
X	2920682	X_2920682_SNP [dm3] X_3026649_SNP [dm6]	C	T	9.353e^-5	0.994	INTRON kirre	TF binding site BDTNP1_TFBS_dl
2R	6670765	2R_6670765_SNP [dm3] 2R_10783260_SNP [dm6]	A	G	9.442e^-5	0.994	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16515094	2R_16515094_SNP [dm3] 2R_20627589_SNP [dm6]	A	G	9.488e^-5	0.994	SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2L	8232536	2L_8232536_SNP [dm3] 2L_8232536_SNP [dm6]	C	G	9.497e^-5	0.994	INTRON Pvr
3L	19235607	3L_19235607_SNP [dm3] 3L_19242507_SNP [dm6]	G	A	9.569e^-5	0.994	INTERGENIC
3L	16874395	3L_16874395_SNP [dm3] 3L_16881295_SNP [dm6]	A	T	9.642e^-5	0.994	INTRON Lmpt
2L	11175934	2L_11175934_SNP [dm3] 2L_11175934_SNP [dm6]	T	C	9.653e^-5	0.994	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26189129	3R_26189129_SNP [dm3] 3R_30363407_SNP [dm6]	A	C	9.665e^-5	0.994	UTR_3_PRIME hdc
3R	25471054	3R_25471054_SNP [dm3] 3R_29645332_SNP [dm6]	G	A	9.835e^-5	0.994	INTRON Dop1R2
3R	7311054	3R_7311054_SNP [dm3] 3R_11485332_SNP [dm6]	C	T	9.912e^-5	0.994	INTERGENIC
2L	7297422	2L_7297422_SNP [dm3] 2L_7297422_SNP [dm6]	G	A	9.998e^-5	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6728041	2R_6728041_SNP [dm3] 2R_10840536_SNP [dm6]	C	T	1.018e^-4	0.994	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	9803608	2R_9803608_SNP [dm3] 2R_13916103_SNP [dm6]	A	C	1.025e^-4	0.994	INTRON shot
2R	11725107	2R_11725107_SNP [dm3] 2R_15837602_SNP [dm6]	C	T	1.026e^-4	0.994	INTRON tun	regulatory region REDfly_CRMs
3L	3619908	3L_3619908_SNP [dm3] 3L_3619908_SNP [dm6]	T	C	1.032e^-4	0.994	DOWNSTREAM CG14974 INTERGENIC
2R	9803617	2R_9803617_DEL [dm3] 2R_13916112_DEL [dm6]	TTTT	T	1.034e^-4	0.994	INTRON shot
3L	5440665	3L_5440665_SNP [dm3] 3L_5447565_SNP [dm6]	G	A	1.061e^-4	0.994	INTERGENIC
2R	16462741	2R_16462741_SNP [dm3] 2R_20575236_SNP [dm6]	G	T	1.067e^-4	0.994	INTRON qsm
3L	11844598	3L_11844598_SNP [dm3] 3L_11851498_SNP [dm6]	T	C	1.068e^-4	0.994	UTR_3_PRIME CG44837
3R	12146194	3R_12146194_SNP [dm3] 3R_16320472_SNP [dm6]	T	C	1.071e^-4	0.994	UPSTREAM tRNA:F2:89BC INTRON Sulf1
3L	10614191	3L_10614191_SNP [dm3] 3L_10621091_SNP [dm6]	G	A	1.078e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14596752	3R_14596752_SNP [dm3] 3R_18771030_SNP [dm6]	G	A	1.088e^-4	0.994	INTRON CG7720
2L	15963406	2L_15963406_SNP [dm3] 2L_15963406_SNP [dm6]	A	C	1.092e^-4	0.994	UPSTREAM beat-Ib INTERGENIC
2R	16286747	2R_16286747_SNP [dm3] 2R_20399242_SNP [dm6]	T	A	1.095e^-4	0.994	INTERGENIC
3R	10173372	3R_10173372_SNP [dm3] 3R_14347650_SNP [dm6]	T	C	1.110e^-4	0.994	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13116473	2R_13116473_SNP [dm3] 2R_17228968_SNP [dm6]	C	T	1.110e^-4	0.994	INTRON mbl
3R	18326803	3R_18326803_SNP [dm3] 3R_22501081_SNP [dm6]	T	C	1.119e^-4	0.994	INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	3721669	2R_3721669_SNP [dm3] 2R_7834164_SNP [dm6]	C	T	1.127e^-4	0.994	SYNONYMOUS_CODING Atg10 DOWNSTREAM Dgk & 1 other
3R	18614546	3R_18614546_SNP [dm3] 3R_22788824_SNP [dm6]	A	G	1.129e^-4	0.994	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7265467	2L_7265467_SNP [dm3] 2L_7265467_SNP [dm6]	G	A	1.134e^-4	0.994	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13306997	X_13306997_SNP [dm3] X_13412964_SNP [dm6]	A	G	1.134e^-4	0.994	UPSTREAM Set2 & 1 other INTRON CG1998	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17606194	2R_17606194_SNP [dm3] 2R_21718689_SNP [dm6]	G	T	1.135e^-4	0.994	NON_SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25948111	3R_25948111_SNP [dm3] 3R_30122389_SNP [dm6]	T	C	1.141e^-4	0.994	NON_SYNONYMOUS_CODING CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1
2L	8581013	2L_8581013_DEL [dm3] 2L_8581013_DEL [dm6]	ATGGGA	A	1.141e^-4	0.994	INTRON Sema-1a
2R	19635485	2R_19635485_SNP [dm3] 2R_23747962_SNP [dm6]	T	A	1.141e^-4	0.994	NON_SYNONYMOUS_CODING CG13560	TF binding site mE1_TFBS_chinmo
3R	10521115	3R_10521115_SNP [dm3] 3R_14695393_SNP [dm6]	A	G	1.153e^-4	0.994	INTRON Meltrin	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6573140	2R_6573140_SNP [dm3] 2R_10685635_SNP [dm6]	C	T	1.154e^-4	0.994	INTRON stan
2R	16462762	2R_16462762_SNP [dm3] 2R_20575257_SNP [dm6]	A	T	1.159e^-4	0.994	INTRON qsm
2L	1860770	2L_1860770_SNP [dm3] 2L_1860770_SNP [dm6]	G	A	1.161e^-4	0.994	INTRON CG31663
3R	14701084	3R_14701084_SNP [dm3] 3R_18875362_SNP [dm6]	A	G	1.194e^-4	0.994	UPSTREAM CG14298 INTERGENIC
3L	2786796	3L_2786796_SNP [dm3] 3L_2786796_SNP [dm6]	T	A	1.206e^-4	0.994	UTR_3_PRIME CG43444 DOWNSTREAM pgant6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16655402	2R_16655402_SNP [dm3] 2R_20767897_SNP [dm6]	T	G	1.208e^-4	0.994	DOWNSTREAM CR44665 INTERGENIC
3L	5372027	3L_5372027_DEL [dm3] 3L_5378927_DEL [dm6]	GG	G	1.211e^-4	0.994	DOWNSTREAM CR45743 INTRON Ir64a
X	8617770	X_8617770_SNP [dm3] X_8723737_SNP [dm6]	G	T	1.211e^-4	0.994	UPSTREAM CR43297 INTERGENIC
3R	27237993	3R_27237993_SNP [dm3] 3R_31412271_SNP [dm6]	A	C	1.213e^-4	0.994	INTRON Gprk2	TF binding site mE1_TFBS_cad
X	8727343	X_8727343_SNP [dm3] X_8833310_SNP [dm6]	A	G	1.221e^-4	0.994	INTERGENIC
3L	17316868	3L_17316868_SNP [dm3] 3L_17323768_SNP [dm6]	C	A	1.226e^-4	0.994	NON_SYNONYMOUS_CODING CG13724 DOWNSTREAM CG13725
3R	7792513	3R_7792513_SNP [dm3] 3R_11966791_SNP [dm6]	G	A	1.228e^-4	0.994	SPLICE_SITE_REGION CG12213 UPSTREAM GC1 INTRON CG12213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12618893	3R_12618893_SNP [dm3] 3R_16793171_SNP [dm6]	G	A	1.230e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20887116	3L_20887116_SNP [dm3] 3L_20894016_SNP [dm6]	C	T	1.233e^-4	0.994	INTERGENIC
X	13192452	X_13192452_SNP [dm3] X_13298419_SNP [dm6]	C	T	1.242e^-4	0.994	INTRON CG1764 & 1 other
2L	8979628	2L_8979628_DEL [dm3] 2L_8979628_DEL [dm6]	ATTTT	A	1.249e^-4	0.994	INTRON CG13101
2R	4167874	2R_4167874_SNP [dm3] 2R_8280369_SNP [dm6]	G	C	1.249e^-4	0.994	INTERGENIC
2L	5595558	2L_5595558_SNP [dm3] 2L_5595558_SNP [dm6]	G	A	1.253e^-4	0.994	INTERGENIC
3L	4745359	3L_4745359_SNP [dm3] 3L_4745359_SNP [dm6]	T	A	1.254e^-4	0.994	DOWNSTREAM CR43882 INTRON RhoGEF64C
3L	16873982	3L_16873982_SNP [dm3] 3L_16880882_SNP [dm6]	T	C	1.269e^-4	0.994	INTRON Lmpt
3R	13911632	3R_13911632_SNP [dm3] 3R_18085910_SNP [dm6]	T	G	1.270e^-4	0.994	INTERGENIC
2L	8972653	2L_8972653_SNP [dm3] 2L_8972653_SNP [dm6]	T	G	1.280e^-4	0.994	INTRON CG9541
2R	9808463	2R_9808463_SNP [dm3] 2R_13920958_SNP [dm6]	A	G	1.282e^-4	0.994	INTRON shot
3R	23926705	3R_23926705_SNP [dm3] 3R_28100983_SNP [dm6]	A	T	1.284e^-4	0.994	INTERGENIC
2R	17967291	2R_17967291_SNP [dm3] 2R_22079786_SNP [dm6]	A	G	1.286e^-4	0.994	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8984181	2L_8984181_SNP [dm3] 2L_8984181_SNP [dm6]	C	T	1.286e^-4	0.994	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17333089	3R_17333089_SNP [dm3] 3R_21507367_SNP [dm6]	T	C	1.287e^-4	0.994	SPLICE_SITE_REGION C15 INTRON C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8709151	X_8709151_MNP [dm3] X_8815118_MNP [dm6]	ATG	GAC	1.293e^-4	0.994	INTERGENIC
3R	10173349	3R_10173349_SNP [dm3] 3R_14347627_SNP [dm6]	T	C	1.298e^-4	0.994	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12358595	3L_12358595_SNP [dm3] 3L_12365495_SNP [dm6]	A	T	1.303e^-4	0.994	INTERGENIC
2R	6152953	2R_6152953_SNP [dm3] 2R_10265448_SNP [dm6]	A	T	1.306e^-4	0.994	UPSTREAM CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20994632	2L_20994632_SNP [dm3] 2L_20994632_SNP [dm6]	A	C	1.308e^-4	0.994	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
3R	16427951	3R_16427951_SNP [dm3] 3R_20602229_SNP [dm6]	A	T	1.314e^-4	0.994	INTRON bon	transposable element FlyBase
3R	25290178	3R_25290178_INS [dm3] 3R_29464456_INS [dm6]	T	TTGTCGAACAGAATCGTCAT...	1.317e^-4	0.994	INTRON Ptp99A
3L	612011	3L_612011_SNP [dm3] 3L_612011_SNP [dm6]	T	G	1.319e^-4	0.994	INTERGENIC
X	11656567	X_11656567_SNP [dm3] X_11762534_SNP [dm6]	C	T	1.322e^-4	0.994	DOWNSTREAM CG9360 INTRON m
2R	17952451	2R_17952451_SNP [dm3] 2R_22064946_SNP [dm6]	G	A	1.331e^-4	0.994	INTRON Snp
3L	12674278	3L_12674278_DEL [dm3] 3L_12681178_DEL [dm6]	TTGAAT	T	1.337e^-4	0.994	INTERGENIC
3R	13805434	3R_13805434_SNP [dm3] 3R_17979712_SNP [dm6]	C	G	1.341e^-4	0.994	INTRON cpo
3R	12859953	3R_12859953_SNP [dm3] 3R_17034231_SNP [dm6]	T	C	1.344e^-4	0.994	SYNONYMOUS_CODING CG4009 DOWNSTREAM CG31268	TF binding site mE1_TFBS_HSA
3L	10147799	3L_10147799_SNP [dm3] 3L_10154699_SNP [dm6]	G	A	1.344e^-4	0.994	INTRON dpr10
2L	2177756	2L_2177756_SNP [dm3] 2L_2177756_SNP [dm6]	T	A	1.349e^-4	0.994	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_sens mE1_TFBS_Trl
X	19716709	X_19716709_SNP [dm3] X_19822676_SNP [dm6]	G	A	1.353e^-4	0.994	DOWNSTREAM skpE INTERGENIC
2R	6670704	2R_6670704_SNP [dm3] 2R_10783199_SNP [dm6]	C	T	1.359e^-4	0.994	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21434436	3R_21434436_SNP [dm3] 3R_25608714_SNP [dm6]	T	A	1.367e^-4	0.994	DOWNSTREAM msi INTRON ymp
3L	12674261	3L_12674261_DEL [dm3] 3L_12681161_DEL [dm6]	AGGCTATCGTAT...	A	1.367e^-4	0.994	INTERGENIC
3R	12618874	3R_12618874_SNP [dm3] 3R_16793152_SNP [dm6]	C	A	1.370e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19320117	3L_19320117_SNP [dm3] 3L_19327017_SNP [dm6]	C	A	1.382e^-4	0.994	INTRON pip
2L	1240998	2L_1240998_SNP [dm3] 2L_1240998_SNP [dm6]	G	C	1.387e^-4	0.994	INTRON CG5397	TF binding site mE1_TFBS_chinmo
X	15633206	X_15633206_SNP [dm3] X_15739173_SNP [dm6]	A	G	1.397e^-4	0.994	UPSTREAM CG8206 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	12139173	X_12139173_SNP [dm3] X_12245140_SNP [dm6]	G	A	1.397e^-4	0.994	INTRON Ten-a
3L	10905588	3L_10905588_SNP [dm3] 3L_10912488_SNP [dm6]	T	A	1.404e^-4	0.994	INTERGENIC
2R	13507988	2R_13507988_DEL [dm3] 2R_17620483_DEL [dm6]	TT	A	1.407e^-4	0.994	INTRON CG10936
3R	13418971	3R_13418971_SNP [dm3] 3R_17593249_SNP [dm6]	T	A	1.412e^-4	0.994	INTERGENIC
2R	21062666	2R_21062666_SNP [dm3] 2R_25175143_SNP [dm6]	T	C	1.422e^-4	0.994	UTR_3_PRIME Peb UPSTREAM PebII DOWNSTREAM Peb
2L	8986874	2L_8986874_SNP [dm3] 2L_8986874_SNP [dm6]	G	A	1.426e^-4	0.994	INTRON rost
X	12758263	X_12758263_SNP [dm3] X_12864230_SNP [dm6]	C	T	1.440e^-4	0.994	INTRON Pde9
3L	12674244	3L_12674244_SNP [dm3] 3L_12681144_SNP [dm6]	T	A	1.443e^-4	0.994	INTERGENIC
3L	5960652	3L_5960652_SNP [dm3] 3L_5967552_SNP [dm6]	T	C	1.462e^-4	0.994	UTR_3_PRIME CG10479	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	21062057	2R_21062057_DEL [dm3] 2R_25174534_DEL [dm6]	TTCTAGGTAGATAAGTAGTC...	T	1.476e^-4	0.994	UPSTREAM PebII DOWNSTREAM Peb INTERGENIC
2R	3359440	2R_3359440_SNP [dm3] 2R_7471935_SNP [dm6]	T	G	1.479e^-4	0.994	INTRON Aldh-III
X	8716736	X_8716736_SNP [dm3] X_8822703_SNP [dm6]	G	A	1.482e^-4	0.994	INTERGENIC
3R	24430474	3R_24430474_SNP [dm3] 3R_28604752_SNP [dm6]	A	G	1.486e^-4	0.994	UTR_3_PRIME Hrb98DE INTRON Hrb98DE
X	14062269	X_14062269_DEL [dm3] X_14168236_DEL [dm6]	AATTTTATTTCTAGCCCC...	G	1.489e^-4	0.994	INTERGENIC
3R	6522116	3R_6522116_DEL [dm3] 3R_10696394_DEL [dm6]	TTAGT	A	1.495e^-4	0.994	UPSTREAM pug & 1 other DOWNSTREAM Skeletor INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8986883	2L_8986883_SNP [dm3] 2L_8986883_SNP [dm6]	C	G	1.503e^-4	0.994	INTRON rost
3R	10428620	3R_10428620_SNP [dm3] 3R_14602898_SNP [dm6]	A	C	1.506e^-4	0.994	UPSTREAM stumps INTRON stumps
2L	16339403	2L_16339403_SNP [dm3] 2L_16339403_SNP [dm6]	A	T	1.519e^-4	0.994	SYNONYMOUS_CODING CG42266 DOWNSTREAM CG44405
2L	16841704	2L_16841704_SNP [dm3] 2L_16841704_SNP [dm6]	C	T	1.529e^-4	0.994	UTR_3_PRIME SclA & 1 other DOWNSTREAM CG13284
2R	17780442	2R_17780442_INS [dm3] 2R_21892937_INS [dm6]	G	GG	1.531e^-4	0.994	INTRON Fili
X	12758254	X_12758254_SNP [dm3] X_12864221_SNP [dm6]	G	C	1.532e^-4	0.994	INTRON Pde9
3R	10174701	3R_10174701_SNP [dm3] 3R_14348979_SNP [dm6]	T	C	1.535e^-4	0.994	INTRON NK7.1
X	12758136	X_12758136_SNP [dm3] X_12864103_SNP [dm6]	A	G	1.538e^-4	0.994	INTRON Pde9
3R	26962288	3R_26962288_SNP [dm3] 3R_31136566_SNP [dm6]	A	C	1.542e^-4	0.994	INTRON Gycbeta100B
3R	11862741	3R_11862741_SNP [dm3] 3R_16037019_SNP [dm6]	A	G	1.548e^-4	0.994	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3R	11862742	3R_11862742_SNP [dm3] 3R_16037020_SNP [dm6]	A	G	1.548e^-4	0.994	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3L	18369491	3L_18369491_SNP [dm3] 3L_18376391_SNP [dm6]	C	T	1.552e^-4	0.994	INTERGENIC
3L	16039074	3L_16039074_INS [dm3] 3L_16045974_INS [dm6]	C	CC	1.552e^-4	0.994	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8671961	3R_8671961_SNP [dm3] 3R_12846239_SNP [dm6]	T	C	1.566e^-4	0.994	INTRON beat-Va
3L	5440960	3L_5440960_SNP [dm3] 3L_5447860_SNP [dm6]	T	C	1.574e^-4	0.994	INTERGENIC
2L	7106956	2L_7106956_SNP [dm3] 2L_7106956_SNP [dm6]	C	A	1.574e^-4	0.994	INTRON Pvf3
3L	3596858	3L_3596858_SNP [dm3] 3L_3596858_SNP [dm6]	T	A	1.574e^-4	0.994	INTRON Eip63E
2L	8937933	2L_8937933_SNP [dm3] 2L_8937933_SNP [dm6]	A	T	1.580e^-4	0.994	INTRON Tsp29Fb	TF binding site BDTNP1_TFBS_dl
3L	3525545	3L_3525545_SNP [dm3] 3L_3525545_SNP [dm6]	T	G	1.582e^-4	0.994	INTRON Eip63E	TF binding site mE1_TFBS_sens
2R	16515074	2R_16515074_SNP [dm3] 2R_20627569_SNP [dm6]	A	T	1.586e^-4	0.994	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
3R	25444285	3R_25444285_SNP [dm3] 3R_29618563_SNP [dm6]	T	C	1.595e^-4	0.994	UPSTREAM CG1907 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25300965	3R_25300965_SNP [dm3] 3R_29475243_SNP [dm6]	G	A	1.600e^-4	0.994	INTRON Ptp99A
2L	8232628	2L_8232628_SNP [dm3] 2L_8232628_SNP [dm6]	T	C	1.605e^-4	0.994	INTRON Pvr
2R	20992012	2R_20992012_SNP [dm3] 2R_25104489_SNP [dm6]	T	A	1.615e^-4	0.994	INTRON lov
2R	6728014	2R_6728014_SNP [dm3] 2R_10840509_SNP [dm6]	T	A	1.618e^-4	0.994	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26577006	3R_26577006_SNP [dm3] 3R_30751284_SNP [dm6]	G	A	1.619e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26578309	3R_26578309_DEL [dm3] 3R_30752587_DEL [dm6]	TGAAC	G	1.619e^-4	0.994	INTERGENIC
2R	10821273	2R_10821273_SNP [dm3] 2R_14933768_SNP [dm6]	A	C	1.620e^-4	0.994	NON_SYNONYMOUS_CODING CG12853 UPSTREAM CG10253 INTRON CG10253	TF binding site mE1_TFBS_Trl
2L	8985080	2L_8985080_SNP [dm3] 2L_8985080_SNP [dm6]	T	A	1.620e^-4	0.994	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9351670	3L_9351670_SNP [dm3] 3L_9358570_SNP [dm6]	G	C	1.636e^-4	0.994	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25438708	3R_25438708_DEL [dm3] 3R_29612986_DEL [dm6]	GACG	G	1.644e^-4	0.994	INTRON alph
2L	8983416	2L_8983416_SNP [dm3] 2L_8983416_SNP [dm6]	G	C	1.655e^-4	0.994	INTRON CG13101
3L	10424319	3L_10424319_SNP [dm3] 3L_10431219_SNP [dm6]	G	C	1.657e^-4	0.994	NON_SYNONYMOUS_CODING Ir67b
2R	7596387	2R_7596387_SNP [dm3] 2R_11708882_SNP [dm6]	C	A	1.680e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14559859	2R_14559859_SNP [dm3] 2R_18672354_SNP [dm6]	A	G	1.680e^-4	0.994	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6488959	3L_6488959_SNP [dm3] 3L_6495859_SNP [dm6]	C	G	1.694e^-4	0.994	UTR_5_PRIME sfl UPSTREAM CG10144	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	11862817	3R_11862817_DEL [dm3] 3R_16037095_DEL [dm6]	GTTCATATAAG...	G	1.699e^-4	0.994	INTRON pnr	TF binding site BDTNP1_TFBS_dl
X	14758457	X_14758457_SNP [dm3] X_14864424_SNP [dm6]	T	C	1.710e^-4	0.994	SYNONYMOUS_CODING CG9518 INTRON Flo2	TF binding site mE1_TFBS_sens
3L	13246425	3L_13246425_SNP [dm3] 3L_13253325_SNP [dm6]	G	T	1.713e^-4	0.994	INTRON caps	TF binding site mE1_TFBS_inv
3R	5859809	3R_5859809_SNP [dm3] 3R_10034087_SNP [dm6]	C	A	1.719e^-4	0.994	INTRON Mical
2L	633467	2L_633467_SNP [dm3] 2L_633467_SNP [dm6]	A	G	1.720e^-4	0.994	INTERGENIC
3L	16874559	3L_16874559_SNP [dm3] 3L_16881459_SNP [dm6]	G	A	1.731e^-4	0.994	INTRON Lmpt
3L	18208362	3L_18208362_SNP [dm3] 3L_18215262_SNP [dm6]	A	T	1.735e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8063459	2L_8063459_SNP [dm3] 2L_8063459_SNP [dm6]	A	G	1.751e^-4	0.994	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12365911	3L_12365911_SNP [dm3] 3L_12372811_SNP [dm6]	A	G	1.753e^-4	0.994	INTRON Ncc69
3R	18737022	3R_18737022_SNP [dm3] 3R_22911300_SNP [dm6]	G	T	1.760e^-4	0.994	INTRON klg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10475447	2R_10475447_SNP [dm3] 2R_14587942_SNP [dm6]	A	G	1.765e^-4	0.994	DOWNSTREAM ttv INTERGENIC
3R	11963462	3R_11963462_SNP [dm3] 3R_16137740_SNP [dm6]	T	A	1.769e^-4	0.994	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2457488	3L_2457488_SNP [dm3] 3L_2457488_SNP [dm6]	C	G	1.785e^-4	0.994	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10231501	2R_10231501_SNP [dm3] 2R_14343996_SNP [dm6]	T	C	1.804e^-4	0.994	INTRON Shroom
2R	6981149	2R_6981149_SNP [dm3] 2R_11093644_SNP [dm6]	T	A	1.815e^-4	0.994	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16858295	3L_16858295_SNP [dm3] 3L_16865195_SNP [dm6]	C	T	1.817e^-4	0.994	UPSTREAM Lmpt DOWNSTREAM CG9951 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8793847	3L_8793847_DEL [dm3] 3L_8800747_DEL [dm6]	TT	T	1.825e^-4	0.994	UPSTREAM CG13310 DOWNSTREAM CG13311 INTERGENIC
2L	17457105	2L_17457105_SNP [dm3] 2L_17457105_SNP [dm6]	A	G	1.825e^-4	0.994	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16036929	3L_16036929_DEL [dm3] 3L_16043829_DEL [dm6]	CGATCC	C	1.826e^-4	0.994	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	16339406	2L_16339406_SNP [dm3] 2L_16339406_SNP [dm6]	G	A	1.826e^-4	0.994	SYNONYMOUS_CODING CG42266 DOWNSTREAM CG44405
3R	16427952	3R_16427952_DEL [dm3] 3R_20602230_DEL [dm6]	TGTCTCCGACGC...	T	1.835e^-4	0.994	INTRON bon	transposable element FlyBase
2L	656074	2L_656074_SNP [dm3] 2L_656074_SNP [dm6]	T	C	1.839e^-4	0.994	INTRON ds
2L	5848574	2L_5848574_SNP [dm3] 2L_5848574_SNP [dm6]	G	A	1.839e^-4	0.994	INTRON TrissinR
2R	5308354	2R_5308354_SNP [dm3] 2R_9420849_SNP [dm6]	C	A	1.842e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17392176	2R_17392176_SNP [dm3] 2R_21504671_SNP [dm6]	T	C	1.845e^-4	0.994	INTRON MESK2	TF binding site mE1_TFBS_inv
3R	27493567	3R_27493567_SNP [dm3] 3R_31667845_SNP [dm6]	C	A	1.856e^-4	0.994	INTERGENIC
2L	7450414	2L_7450414_SNP [dm3] 2L_7450414_SNP [dm6]	A	T	1.863e^-4	0.994	UTR_5_PRIME santa-maria INTRON santa-maria
2R	21011715	2R_21011715_SNP [dm3] 2R_25124192_SNP [dm6]	G	C	1.865e^-4	0.994	INTRON lov
3R	11242275	3R_11242275_INS [dm3] 3R_15416553_INS [dm6]	C	CC	1.872e^-4	0.994	UTR_3_PRIME Atx2 DOWNSTREAM Atx2 & 2 others
2L	7435402	2L_7435402_SNP [dm3] 2L_7435402_SNP [dm6]	T	C	1.878e^-4	0.994	INTERGENIC
3L	17239208	3L_17239208_SNP [dm3] 3L_17246108_SNP [dm6]	T	C	1.881e^-4	0.994	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10152080	3L_10152080_SNP [dm3] 3L_10158980_SNP [dm6]	C	T	1.882e^-4	0.994	INTRON dpr10
3L	2794879	3L_2794879_SNP [dm3] 3L_2794879_SNP [dm6]	A	G	1.892e^-4	0.994	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10427414	3L_10427414_SNP [dm3] 3L_10434314_SNP [dm6]	C	T	1.905e^-4	0.994	UPSTREAM Ir67c INTERGENIC
3R	15722835	3R_15722835_SNP [dm3] 3R_19897113_SNP [dm6]	C	T	1.907e^-4	0.994	DOWNSTREAM CG4538 INTRON CG4733
2L	8939180	2L_8939180_SNP [dm3] 2L_8939180_SNP [dm6]	T	C	1.919e^-4	0.994	NON_SYNONYMOUS_CODING Tsp29Fb DOWNSTREAM CG9510
2L	20994441	2L_20994441_SNP [dm3] 2L_20994441_SNP [dm6]	A	T	1.921e^-4	0.994	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	9491175	2L_9491175_INS [dm3] 2L_9491175_INS [dm6]	T	TGG	1.937e^-4	0.994	UTR_3_PRIME Gdi DOWNSTREAM Gdi
2R	4418260	2R_4418260_SNP [dm3] 2R_8530755_SNP [dm6]	C	T	1.938e^-4	0.994	INTRON mtt
3L	10147830	3L_10147830_SNP [dm3] 3L_10154730_SNP [dm6]	A	G	1.938e^-4	0.994	INTRON dpr10
2L	8773754	2L_8773754_SNP [dm3] 2L_8773754_SNP [dm6]	G	A	1.939e^-4	0.994	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	21025343	2R_21025343_INS [dm3] 2R_25137820_INS [dm6]	A	ATCTTA	1.945e^-4	0.994	DOWNSTREAM CG43106 INTRON lov
2R	6444757	2R_6444757_DEL [dm3] 2R_10557252_DEL [dm6]	TAGGTGGCAGCT...	T	1.947e^-4	0.994	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5628912	2L_5628912_SNP [dm3] 2L_5628912_SNP [dm6]	G	A	1.952e^-4	0.994	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
2R	19599431	2R_19599431_SNP [dm3] 2R_23711908_SNP [dm6]	T	A	1.993e^-4	0.994	INTERGENIC
3R	26088013	3R_26088013_INS [dm3] 3R_30262291_INS [dm6]	G	GCTGCTTG	2.000e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	16286749	2R_16286749_SNP [dm3] 2R_20399244_SNP [dm6]	G	T	2.012e^-4	0.994	INTERGENIC
3R	26459252	3R_26459252_DEL [dm3] 3R_30633530_DEL [dm6]	AATTAGT	A	2.024e^-4	0.994	INTERGENIC
2R	8207825	2R_8207825_SNP [dm3] 2R_12320320_SNP [dm6]	C	T	2.025e^-4	0.994	UPSTREAM CG13163 DOWNSTREAM CR44316 INTERGENIC
2L	651289	2L_651289_SNP [dm3] 2L_651289_SNP [dm6]	A	C	2.030e^-4	0.994	INTRON ds
2L	12911454	2L_12911454_SNP [dm3] 2L_12911454_SNP [dm6]	G	C	2.036e^-4	0.994	INTERGENIC
2L	658858	2L_658858_SNP [dm3] 2L_658858_SNP [dm6]	A	T	2.043e^-4	0.994	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16888023	2L_16888023_SNP [dm3] 2L_16888023_SNP [dm6]	T	A	2.060e^-4	0.994	UPSTREAM tweek & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	14331091	3R_14331091_SNP [dm3] 3R_18505369_SNP [dm6]	A	T	2.069e^-4	0.994	INTRON fru
3L	12778944	3L_12778944_SNP [dm3] 3L_12785844_SNP [dm6]	C	G	2.075e^-4	0.994	INTRON Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9491178	2L_9491178_SNP [dm3] 2L_9491178_SNP [dm6]	A	T	2.078e^-4	0.994	UTR_3_PRIME Gdi DOWNSTREAM Gdi
3L	2457460	3L_2457460_SNP [dm3] 3L_2457460_SNP [dm6]	A	G	2.089e^-4	0.994	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	636119	2L_636119_SNP [dm3] 2L_636119_SNP [dm6]	C	T	2.092e^-4	0.994	INTERGENIC
2R	19557669	2R_19557669_SNP [dm3] 2R_23670146_SNP [dm6]	A	T	2.100e^-4	0.994	NON_SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17772646	2R_17772646_DEL [dm3] 2R_21885141_DEL [dm6]	AA	A	2.101e^-4	0.994	INTRON Fili	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	13148024	2R_13148024_SNP [dm3] 2R_17260519_SNP [dm6]	C	A	2.104e^-4	0.994	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	19710698	2R_19710698_SNP [dm3] 2R_23823175_SNP [dm6]	T	A	2.105e^-4	0.994	DOWNSTREAM CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo
X	6945821	X_6945821_SNP [dm3] X_7051788_SNP [dm6]	T	C	2.107e^-4	0.994	INTRON CG12541
3R	7308429	3R_7308429_SNP [dm3] 3R_11482707_SNP [dm6]	A	G	2.115e^-4	0.994	INTERGENIC
2L	8503627	2L_8503627_SNP [dm3] 2L_8503627_SNP [dm6]	A	G	2.123e^-4	0.994	INTRON Dh31
2L	6063775	2L_6063775_SNP [dm3] 2L_6063775_SNP [dm6]	A	G	2.126e^-4	0.994	DOWNSTREAM CG13994 INTRON Fbw5
2R	20949577	2R_20949577_SNP [dm3] 2R_25062054_SNP [dm6]	C	A	2.128e^-4	0.994	UTR_5_PRIME gsb	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	6468418	3L_6468418_DEL [dm3] 3L_6475318_DEL [dm6]	GC	T	2.131e^-4	0.994	INTRON CG42747
3L	10146863	3L_10146863_SNP [dm3] 3L_10153763_SNP [dm6]	A	T	2.144e^-4	0.994	DOWNSTREAM CG8072 INTRON dpr10
2L	6060804	2L_6060804_SNP [dm3] 2L_6060804_SNP [dm6]	A	G	2.145e^-4	0.994	NON_SYNONYMOUS_CODING CG34180 DOWNSTREAM CG9140 & 1 other
3L	11373357	3L_11373357_SNP [dm3] 3L_11380257_SNP [dm6]	C	G	2.151e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9071547	2L_9071547_SNP [dm3] 2L_9071547_SNP [dm6]	C	T	2.162e^-4	0.994	UPSTREAM CG31708 EXON CR44483
3R	7967642	3R_7967642_SNP [dm3] 3R_12141920_SNP [dm6]	C	T	2.178e^-4	0.994	INTRON dpr15	TF binding site BDTNP1_TFBS_da
3R	25440792	3R_25440792_SNP [dm3] 3R_29615070_SNP [dm6]	G	A	2.182e^-4	0.994	INTRON alph
2L	1022643	2L_1022643_SNP [dm3] 2L_1022643_SNP [dm6]	A	T	2.190e^-4	0.994	INTRON IA-2
2L	1022646	2L_1022646_SNP [dm3] 2L_1022646_SNP [dm6]	G	A	2.190e^-4	0.994	INTRON IA-2
2R	21060654	2R_21060654_SNP [dm3] 2R_25173131_SNP [dm6]	G	A	2.225e^-4	0.994	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC	transposable element FlyBase
2R	6444747	2R_6444747_SNP [dm3] 2R_10557242_SNP [dm6]	G	A	2.234e^-4	0.994	UPSTREAM psq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10167786	2L_10167786_SNP [dm3] 2L_10167786_SNP [dm6]	T	C	2.237e^-4	0.994	INTRON CG44153
3L	1300994	3L_1300994_INS [dm3] 3L_1300994_INS [dm6]	C	CTTAAATA	2.241e^-4	0.994	UTR_3_PRIME Rac1 DOWNSTREAM scf
3L	14431735	3L_14431735_SNP [dm3] 3L_14438635_SNP [dm6]	A	T	2.246e^-4	0.994	INTRON bbg	TF binding site mE1_TFBS_inv
X	4801518	X_4801518_SNP [dm3] X_4907485_SNP [dm6]	C	T	2.264e^-4	0.994	SYNONYMOUS_CODING CG6927 DOWNSTREAM CG42594	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	16874127	3L_16874127_SNP [dm3] 3L_16881027_SNP [dm6]	A	G	2.270e^-4	0.994	INTRON Lmpt
3R	14179975	3R_14179975_SNP [dm3] 3R_18354253_SNP [dm6]	T	C	2.290e^-4	0.994	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	23926707	3R_23926707_SNP [dm3] 3R_28100985_SNP [dm6]	A	G	2.295e^-4	0.994	INTERGENIC
3R	26080688	3R_26080688_SNP [dm3] 3R_30254966_SNP [dm6]	A	T	2.296e^-4	0.994	DOWNSTREAM CG18404 INTERGENIC
3L	3619065	3L_3619065_SNP [dm3] 3L_3619065_SNP [dm6]	T	A	2.298e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	5154878	3R_5154878_SNP [dm3] 3R_9329156_SNP [dm6]	C	T	2.308e^-4	0.994	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	18398402	3L_18398402_SNP [dm3] 3L_18405302_SNP [dm6]	T	A	2.313e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
2L	584593	2L_584593_SNP [dm3] 2L_584593_SNP [dm6]	A	T	2.323e^-4	0.994	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	7698327	3R_7698327_SNP [dm3] 3R_11872605_SNP [dm6]	C	T	2.329e^-4	0.994	INTERGENIC
3R	8526595	3R_8526595_SNP [dm3] 3R_12700873_SNP [dm6]	G	A	2.334e^-4	0.994	INTRON Past1
X	9384245	X_9384245_SNP [dm3] X_9490212_SNP [dm6]	A	C	2.335e^-4	0.994	INTRON mgl
2L	8774276	2L_8774276_SNP [dm3] 2L_8774276_SNP [dm6]	A	G	2.349e^-4	0.994	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8677877	3R_8677877_SNP [dm3] 3R_12852155_SNP [dm6]	A	C	2.351e^-4	0.994	INTERGENIC
3L	1336797	3L_1336797_SNP [dm3] 3L_1336797_SNP [dm6]	T	G	2.352e^-4	0.994	INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	2920684	X_2920684_SNP [dm3] X_3026651_SNP [dm6]	C	T	2.357e^-4	0.994	INTRON kirre	TF binding site BDTNP1_TFBS_dl
X	11802831	X_11802831_SNP [dm3] X_11908798_SNP [dm6]	C	G	2.363e^-4	0.994	INTRON pot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8471919	2L_8471919_SNP [dm3] 2L_8471919_SNP [dm6]	T	G	2.364e^-4	0.994	INTRON d
3R	16908731	3R_16908731_SNP [dm3] 3R_21083009_SNP [dm6]	A	C	2.366e^-4	0.994	DOWNSTREAM RhoGAP93B INTERGENIC
3R	18839858	3R_18839858_SNP [dm3] 3R_23014136_SNP [dm6]	T	C	2.368e^-4	0.994	INTRON CG6688	TF binding site mE1_TFBS_chinmo
3L	11997572	3L_11997572_SNP [dm3] 3L_12004472_SNP [dm6]	C	A	2.375e^-4	0.994	UTR_5_PRIME CG6928 INTRON CG6928
3R	14523018	3R_14523018_SNP [dm3] 3R_18697296_SNP [dm6]	A	C	2.384e^-4	0.994	INTERGENIC
2R	14876048	2R_14876048_SNP [dm3] 2R_18988543_SNP [dm6]	T	G	2.384e^-4	0.994	INTRON tn
3L	12674241	3L_12674241_SNP [dm3] 3L_12681141_SNP [dm6]	T	A	2.389e^-4	0.994	INTERGENIC
2L	7304674	2L_7304674_SNP [dm3] 2L_7304674_SNP [dm6]	A	C	2.396e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4133284	2L_4133284_SNP [dm3] 2L_4133284_SNP [dm6]	G	C	2.402e^-4	0.994	INTERGENIC
2R	18835620	2R_18835620_SNP [dm3] 2R_22948097_SNP [dm6]	C	T	2.404e^-4	0.994	INTERGENIC
3R	17896501	3R_17896501_SNP [dm3] 3R_22070779_SNP [dm6]	T	G	2.415e^-4	0.994	INTRON how	TF binding site mE1_TFBS_HSA
3L	2329607	3L_2329607_SNP [dm3] 3L_2329607_SNP [dm6]	A	G	2.416e^-4	0.994	INTRON MsR1
2R	17594868	2R_17594868_SNP [dm3] 2R_21707363_SNP [dm6]	A	G	2.423e^-4	0.994	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6487147	3L_6487147_SNP [dm3] 3L_6494047_SNP [dm6]	T	C	2.432e^-4	0.994	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
3R	24725242	3R_24725242_SNP [dm3] 3R_28899520_SNP [dm6]	G	T	2.437e^-4	0.994	INTRON Doa	TF binding site mE1_TFBS_cad
2R	12604445	2R_12604445_SNP [dm3] 2R_16716940_SNP [dm6]	C	T	2.439e^-4	0.994	INTRON CG30463
2L	8940495	2L_8940495_SNP [dm3] 2L_8940495_SNP [dm6]	C	T	2.441e^-4	0.994	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
X	2233800	X_2233800_SNP [dm3] X_2339767_SNP [dm6]	T	A	2.443e^-4	0.994	UPSTREAM phl INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	10169857	3R_10169857_INS [dm3] 3R_14344135_INS [dm6]	A	ACTGGTAACACTAA...	2.446e^-4	0.994	INTRON NK7.1	TF binding site mE1_TFBS_cad
3R	17898600	3R_17898600_SNP [dm3] 3R_22072878_SNP [dm6]	T	A	2.462e^-4	0.994	DOWNSTREAM how INTRON how
3R	11605138	3R_11605138_SNP [dm3] 3R_15779416_SNP [dm6]	C	T	2.465e^-4	0.994	UPSTREAM CG5614 INTERGENIC
3R	14411827	3R_14411827_SNP [dm3] 3R_18586105_SNP [dm6]	G	C	2.468e^-4	0.994	INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9803600	2R_9803600_SNP [dm3] 2R_13916095_SNP [dm6]	A	T	2.495e^-4	0.994	INTRON shot
2R	3784784	2R_3784784_SNP [dm3] 2R_7897279_SNP [dm6]	G	A	2.498e^-4	0.994	INTRON CG30377
2R	16462765	2R_16462765_SNP [dm3] 2R_20575260_SNP [dm6]	C	G	2.500e^-4	0.994	INTRON qsm
3L	9906915	3L_9906915_SNP [dm3] 3L_9913815_SNP [dm6]	G	C	2.507e^-4	0.994	INTRON CG34356
2L	21133664	2L_21133664_SNP [dm3] 2L_21133664_SNP [dm6]	G	C	2.513e^-4	0.994	UTR_3_PRIME Nhe2 DOWNSTREAM Nhe2 & 1 other
3R	12612019	3R_12612019_SNP [dm3] 3R_16786297_SNP [dm6]	A	G	2.513e^-4	0.994	INTERGENIC
3L	10909066	3L_10909066_INS [dm3] 3L_10915966_INS [dm6]	G	GCGTCAAAG	2.515e^-4	0.994	INTERGENIC
3R	10941502	3R_10941502_SNP [dm3] 3R_15115780_SNP [dm6]	T	A	2.524e^-4	0.994	INTRON CG42788
3L	2803677	3L_2803677_SNP [dm3] 3L_2803677_SNP [dm6]	T	G	2.525e^-4	0.994	INTRON CG43444
3L	2803679	3L_2803679_DEL [dm3] 3L_2803679_DEL [dm6]	TT	T	2.525e^-4	0.994	INTRON CG43444
2R	17973622	2R_17973622_SNP [dm3] 2R_22086117_SNP [dm6]	G	T	2.528e^-4	0.994	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj
X	2798657	X_2798657_INS [dm3] X_2904624_INS [dm6]	A	AA	2.536e^-4	0.994	INTRON kirre
2R	16514951	2R_16514951_SNP [dm3] 2R_20627446_SNP [dm6]	G	A	2.537e^-4	0.994	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2R	20277954	2R_20277954_SNP [dm3] 2R_24390431_SNP [dm6]	T	G	2.544e^-4	0.994	UPSTREAM CR44813 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26575296	3R_26575296_SNP [dm3] 3R_30749574_SNP [dm6]	C	A	2.545e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1022636	2L_1022636_SNP [dm3] 2L_1022636_SNP [dm6]	G	T	2.551e^-4	0.994	INTRON IA-2
X	2928694	X_2928694_SNP [dm3] X_3034661_SNP [dm6]	C	G	2.569e^-4	0.994	INTRON kirre
2L	8575887	2L_8575887_SNP [dm3] 2L_8575887_SNP [dm6]	T	A	2.588e^-4	0.994	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4784355	2L_4784355_SNP [dm3] 2L_4784355_SNP [dm6]	G	T	2.588e^-4	0.994	INTRON CG15630
3R	24725220	3R_24725220_SNP [dm3] 3R_28899498_SNP [dm6]	C	T	2.595e^-4	0.994	INTRON Doa	TF binding site mE1_TFBS_cad
3L	15235653	3L_15235653_SNP [dm3] 3L_15242553_SNP [dm6]	C	T	2.603e^-4	0.994	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_HSA
3R	10729202	3R_10729202_SNP [dm3] 3R_14903480_SNP [dm6]	A	G	2.608e^-4	0.994	SYNONYMOUS_CODING VhaPPA1-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8071179	3R_8071179_SNP [dm3] 3R_12245457_SNP [dm6]	T	G	2.618e^-4	0.994	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10576710	3L_10576710_SNP [dm3] 3L_10583610_SNP [dm6]	T	A	2.633e^-4	0.994	INTRON A2bp1
3R	11574925	3R_11574925_SNP [dm3] 3R_15749203_SNP [dm6]	C	T	2.635e^-4	0.994	INTERGENIC
3L	15471912	3L_15471912_SNP [dm3] 3L_15478812_SNP [dm6]	T	A	2.642e^-4	0.994	INTERGENIC
3R	16427970	3R_16427970_SNP [dm3] 3R_20602248_SNP [dm6]	G	T	2.642e^-4	0.994	INTRON bon	transposable element FlyBase
3L	10275327	3L_10275327_SNP [dm3] 3L_10282227_SNP [dm6]	T	A	2.644e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13727984	2R_13727984_SNP [dm3] 2R_17840479_SNP [dm6]	T	A	2.645e^-4	0.994	SYNONYMOUS_CODING grh
3R	16427813	3R_16427813_SNP [dm3] 3R_20602091_SNP [dm6]	T	A	2.645e^-4	0.994	INTRON bon	transposable element FlyBase
3R	22391558	3R_22391558_DEL [dm3] 3R_26565836_DEL [dm6]	GG	G	2.654e^-4	0.994	INTRON scrib	TF binding site mE1_TFBS_bab1
X	20197484	X_20197484_SNP [dm3] X_20326457_SNP [dm6]	A	T	2.656e^-4	0.994	UPSTREAM CG1631 INTRON CG1504
3L	14432068	3L_14432068_SNP [dm3] 3L_14438968_SNP [dm6]	A	G	2.659e^-4	0.994	INTRON bbg
2R	13330961	2R_13330961_SNP [dm3] 2R_17443456_SNP [dm6]	C	G	2.674e^-4	0.994	DOWNSTREAM CG18467 INTRON EDTP
2R	7331041	2R_7331041_SNP [dm3] 2R_11443536_SNP [dm6]	G	T	2.675e^-4	0.994	INTRON qvr
2L	2243527	2L_2243527_SNP [dm3] 2L_2243527_SNP [dm6]	A	T	2.677e^-4	0.994	INTRON CG4267
3R	27012542	3R_27012542_SNP [dm3] 3R_31186820_SNP [dm6]	A	G	2.699e^-4	0.994	INTRON mesh
2L	14250721	2L_14250721_SNP [dm3] 2L_14250721_SNP [dm6]	T	C	2.708e^-4	0.994	INTERGENIC
3R	18042732	3R_18042732_SNP [dm3] 3R_22217010_SNP [dm6]	G	A	2.711e^-4	0.994	UTR_3_PRIME Gld2 INTRON SKIP
2L	10266463	2L_10266463_SNP [dm3] 2L_10266463_SNP [dm6]	C	T	2.715e^-4	0.994	SYNONYMOUS_CODING Mob3 UPSTREAM CG4953
2R	12403741	2R_12403741_SNP [dm3] 2R_16516236_SNP [dm6]	G	C	2.717e^-4	0.994	START_GAINED Sema-2a UTR_5_PRIME Sema-2a UPSTREAM Sema-2a INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2R	17758459	2R_17758459_SNP [dm3] 2R_21870954_SNP [dm6]	T	A	2.724e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	3360483	2R_3360483_SNP [dm3] 2R_7472978_SNP [dm6]	C	A	2.730e^-4	0.994	INTRON Aldh-III	TF binding site BDTNP1_TFBS_dl
2L	10790390	2L_10790390_SNP [dm3] 2L_10790390_SNP [dm6]	T	C	2.736e^-4	0.994	UTR_5_PRIME CG31870 INTRON CG31869 & 1 other
2R	19377232	2R_19377232_SNP [dm3] 2R_23489709_SNP [dm6]	C	A	2.736e^-4	0.994	INTRON CG43795
2L	10149051	2L_10149051_SNP [dm3] 2L_10149051_SNP [dm6]	G	A	2.745e^-4	0.994	INTRON CG44153 & 1 other
2L	19295574	2L_19295574_SNP [dm3] 2L_19295574_SNP [dm6]	C	A	2.754e^-4	0.994	INTERGENIC
2L	8988213	2L_8988213_SNP [dm3] 2L_8988213_SNP [dm6]	T	A	2.754e^-4	0.994	INTRON rost
2L	8774324	2L_8774324_SNP [dm3] 2L_8774324_SNP [dm6]	G	C	2.758e^-4	0.994	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19716712	X_19716712_SNP [dm3] X_19822679_SNP [dm6]	G	A	2.758e^-4	0.994	DOWNSTREAM skpE INTERGENIC
2L	8973639	2L_8973639_SNP [dm3] 2L_8973639_SNP [dm6]	A	T	2.761e^-4	0.994	INTRON CG9541
2L	8973642	2L_8973642_SNP [dm3] 2L_8973642_SNP [dm6]	C	T	2.761e^-4	0.994	INTRON CG9541
2L	1650029	2L_1650029_SNP [dm3] 2L_1650029_SNP [dm6]	A	C	2.765e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7596388	2R_7596388_SNP [dm3] 2R_11708883_SNP [dm6]	T	C	2.776e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26504311	3R_26504311_SNP [dm3] 3R_30678589_SNP [dm6]	G	A	2.792e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	17164274	X_17164274_SNP [dm3] X_17270241_SNP [dm6]	A	G	2.794e^-4	0.994	INTRON f
X	4113070	X_4113070_SNP [dm3] X_4219037_SNP [dm6]	T	A	2.795e^-4	0.994	INTRON CG15570	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17379850	2R_17379850_INS [dm3] 2R_21492345_INS [dm6]	A	AGCATGCTACGCAAG...	2.802e^-4	0.994	INTRON Fkbp14
3L	5117794	3L_5117794_SNP [dm3] 3L_5124694_SNP [dm6]	C	T	2.806e^-4	0.994	INTERGENIC
2L	1057085	2L_1057085_SNP [dm3] 2L_1057085_SNP [dm6]	T	C	2.818e^-4	0.994	INTRON S
3L	23532163	3L_23532163_SNP [dm3] 3L_23539063_SNP [dm6]	A	C	2.822e^-4	0.994	INTERGENIC
3R	12948746	3R_12948746_SNP [dm3] 3R_17123024_SNP [dm6]	A	T	2.827e^-4	0.994	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
3R	27237916	3R_27237916_SNP [dm3] 3R_31412194_SNP [dm6]	G	A	2.830e^-4	0.994	INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	16503763	3L_16503763_SNP [dm3] 3L_16510663_SNP [dm6]	A	G	2.852e^-4	0.994	SYNONYMOUS_CODING CG43373
2R	6727735	2R_6727735_SNP [dm3] 2R_10840230_SNP [dm6]	G	T	2.852e^-4	0.994	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
2R	16286683	2R_16286683_SNP [dm3] 2R_20399178_SNP [dm6]	T	A	2.856e^-4	0.994	INTERGENIC
2L	6060754	2L_6060754_SNP [dm3] 2L_6060754_SNP [dm6]	C	A	2.856e^-4	0.994	NON_SYNONYMOUS_CODING CG34180 DOWNSTREAM CG9140 & 1 other
2R	6442384	2R_6442384_DEL [dm3] 2R_10554879_DEL [dm6]	AGAAAA	TT	2.881e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7331036	2R_7331036_SNP [dm3] 2R_11443531_SNP [dm6]	T	A	2.890e^-4	0.994	INTRON qvr
3R	18614608	3R_18614608_SNP [dm3] 3R_22788886_SNP [dm6]	C	T	2.897e^-4	0.994	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8973539	2L_8973539_DEL [dm3] 2L_8973539_DEL [dm6]	AATTATAT	A	2.900e^-4	0.994	SPLICE_SITE_REGION CG9541 INTRON CG9541
2L	9069684	2L_9069684_SNP [dm3] 2L_9069684_SNP [dm6]	A	G	2.903e^-4	0.994	INTRON CG31708
3L	9351432	3L_9351432_INS [dm3] 3L_9358332_INS [dm6]	C	CTCATGCAA	2.906e^-4	0.994	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	20197446	X_20197446_SNP [dm3] X_20326419_SNP [dm6]	T	C	2.920e^-4	0.994	INTRON CG1504
3R	13112813	3R_13112813_SNP [dm3] 3R_17287091_SNP [dm6]	A	T	2.934e^-4	0.994	UPSTREAM CR43490 EXON CR43489
2L	7308861	2L_7308861_SNP [dm3] 2L_7308861_SNP [dm6]	A	T	2.935e^-4	0.994	INTRON wg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14649048	2R_14649048_SNP [dm3] 2R_18761543_SNP [dm6]	T	C	2.937e^-4	0.994	UPSTREAM Mctp & 1 other INTERGENIC
3L	11159966	3L_11159966_SNP [dm3] 3L_11166866_SNP [dm6]	A	G	2.939e^-4	0.994	UTR_3_PRIME wls DOWNSTREAM Alg10
2L	8251408	2L_8251408_SNP [dm3] 2L_8251408_SNP [dm6]	A	C	2.945e^-4	0.994	INTRON CG8086
2L	12911115	2L_12911115_SNP [dm3] 2L_12911115_SNP [dm6]	G	A	2.947e^-4	0.994	INTERGENIC
2L	18156967	2L_18156967_SNP [dm3] 2L_18156967_SNP [dm6]	G	A	2.957e^-4	0.994	NON_SYNONYMOUS_CODING CG5783 DOWNSTREAM CG7200
X	4116459	X_4116459_SNP [dm3] X_4222426_SNP [dm6]	T	G	2.957e^-4	0.994	SPLICE_SITE_REGION CG15570 INTRON CG15570	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26081614	3R_26081614_SNP [dm3] 3R_30255892_SNP [dm6]	T	C	2.958e^-4	0.994	INTERGENIC
3R	13855149	3R_13855149_SNP [dm3] 3R_18029427_SNP [dm6]	T	C	2.964e^-4	0.994	INTERGENIC
2R	12643277	2R_12643277_SNP [dm3] 2R_16755772_SNP [dm6]	G	A	2.970e^-4	0.994	UTR_3_PRIME CG5267 DOWNSTREAM CG34189 INTRON unc-104	TF binding site mE1_TFBS_chinmo
3R	26081750	3R_26081750_SNP [dm3] 3R_30256028_SNP [dm6]	T	A	2.975e^-4	0.994	INTERGENIC
3L	12674274	3L_12674274_SNP [dm3] 3L_12681174_SNP [dm6]	G	A	2.978e^-4	0.994	INTERGENIC
3L	19272361	3L_19272361_SNP [dm3] 3L_19279261_SNP [dm6]	T	A	2.984e^-4	0.994	DOWNSTREAM CG14089 INTRON CG14086
2L	7110133	2L_7110133_SNP [dm3] 2L_7110133_SNP [dm6]	A	T	2.988e^-4	0.994	INTRON Pvf3
X	11952559	X_11952559_SNP [dm3] X_12058526_SNP [dm6]	A	C	2.997e^-4	0.994	INTRON CR43960 & 1 other
X	4113328	X_4113328_SNP [dm3] X_4219295_SNP [dm6]	C	T	3.003e^-4	0.994	SYNONYMOUS_CODING CG15570
2R	13995778	2R_13995778_SNP [dm3] 2R_18108273_SNP [dm6]	G	T	3.008e^-4	0.994	UTR_5_PRIME CG5756
3R	24974261	3R_24974261_SNP [dm3] 3R_29148539_SNP [dm6]	C	T	3.010e^-4	0.994	SYNONYMOUS_CODING Pglym78 UPSTREAM CG11882	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3R	9785563	3R_9785563_SNP [dm3] 3R_13959841_SNP [dm6]	A	G	3.012e^-4	0.994	SYNONYMOUS_CODING Ipp DOWNSTREAM CG9925
3L	1031351	3L_1031351_INS [dm3] 3L_1031351_INS [dm6]	G	GT	3.014e^-4	0.994	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1031373	3L_1031373_SNP [dm3] 3L_1031373_SNP [dm6]	G	A	3.014e^-4	0.994	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10268627	3R_10268627_SNP [dm3] 3R_14442905_SNP [dm6]	C	T	3.020e^-4	0.994	INTRON cv-c
2L	5491934	2L_5491934_SNP [dm3] 2L_5491934_SNP [dm6]	G	T	3.024e^-4	0.994	INTERGENIC
2R	7664476	2R_7664476_SNP [dm3] 2R_11776971_SNP [dm6]	A	G	3.029e^-4	0.994	INTRON ths
2R	10233603	2R_10233603_SNP [dm3] 2R_14346098_SNP [dm6]	T	C	3.033e^-4	0.994	INTRON Shroom
3L	12365886	3L_12365886_SNP [dm3] 3L_12372786_SNP [dm6]	A	G	3.043e^-4	0.994	INTRON Ncc69
2R	11965124	2R_11965124_SNP [dm3] 2R_16077619_SNP [dm6]	A	C	3.048e^-4	0.994	DOWNSTREAM CR43415 INTERGENIC
3R	24404989	3R_24404989_SNP [dm3] 3R_28579267_SNP [dm6]	A	G	3.063e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3R	20363928	3R_20363928_SNP [dm3] 3R_24538206_SNP [dm6]	C	T	3.066e^-4	0.994	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	662051	3L_662051_SNP [dm3] 3L_662051_SNP [dm6]	C	T	3.070e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8973558	2L_8973558_DEL [dm3] 2L_8973558_DEL [dm6]	ATTTTAAATTTA...	A	3.072e^-4	0.994	INTRON CG9541
2R	17127128	2R_17127128_SNP [dm3] 2R_21239623_SNP [dm6]	G	A	3.080e^-4	0.994	INTRON ASPP
X	19716728	X_19716728_SNP [dm3] X_19822695_SNP [dm6]	G	A	3.081e^-4	0.994	DOWNSTREAM skpE INTERGENIC
3L	10303646	3L_10303646_SNP [dm3] 3L_10310546_SNP [dm6]	G	A	3.085e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12578050	2R_12578050_SNP [dm3] 2R_16690545_SNP [dm6]	G	T	3.096e^-4	0.994	UPSTREAM CG5210 INTRON CG30463
2R	1804171	2R_1804171_SNP [dm3] 2R_5916666_SNP [dm6]	G	A	3.115e^-4	0.994	INTRON CG43366	TF binding site mE1_TFBS_chinmo
3L	14050588	3L_14050588_SNP [dm3] 3L_14057488_SNP [dm6]	G	C	3.122e^-4	0.994	INTRON CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11175948	2L_11175948_SNP [dm3] 2L_11175948_SNP [dm6]	A	C	3.133e^-4	0.994	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
2L	7039402	2L_7039402_SNP [dm3] 2L_7039402_SNP [dm6]	A	C	3.136e^-4	0.994	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13255438	3R_13255438_SNP [dm3] 3R_17429716_SNP [dm6]	G	C	3.137e^-4	0.994	INTRON CG5873
3L	6787746	3L_6787746_SNP [dm3] 3L_6794646_SNP [dm6]	A	G	3.144e^-4	0.994	UTR_3_PRIME vvl DOWNSTREAM vvl
3L	14095136	3L_14095136_SNP [dm3] 3L_14102036_SNP [dm6]	C	A	3.156e^-4	0.994	INTERGENIC
3L	13545450	3L_13545450_SNP [dm3] 3L_13552350_SNP [dm6]	C	T	3.162e^-4	0.994	INTRON bru-3
2R	21017396	2R_21017396_SNP [dm3] 2R_25129873_SNP [dm6]	G	A	3.162e^-4	0.994	UTR_3_PRIME CG30430 DOWNSTREAM CG30430 INTRON lov
2L	5003513	2L_5003513_SNP [dm3] 2L_5003513_SNP [dm6]	C	A	3.168e^-4	0.994	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
2R	14279682	2R_14279682_SNP [dm3] 2R_18392177_SNP [dm6]	G	A	3.170e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12023878	2R_12023878_SNP [dm3] 2R_16136373_SNP [dm6]	C	A	3.174e^-4	0.994	INTRON spin
2L	2420723	2L_2420723_SNP [dm3] 2L_2420723_SNP [dm6]	T	C	3.175e^-4	0.994	UPSTREAM CG34447 & 1 other INTERGENIC
3R	14412587	3R_14412587_SNP [dm3] 3R_18586865_SNP [dm6]	C	T	3.176e^-4	0.994	SYNONYMOUS_CODING fray INTRON CG7694	TF binding site mE1_TFBS_cad
2R	3721381	2R_3721381_SNP [dm3] 2R_7833876_SNP [dm6]	G	A	3.180e^-4	0.994	DOWNSTREAM Dgk & 1 other INTRON Atg10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16843388	2L_16843388_SNP [dm3] 2L_16843388_SNP [dm6]	T	A	3.180e^-4	0.994	NON_SYNONYMOUS_CODING CG13284
3L	18600760	3L_18600760_SNP [dm3] 3L_18607660_SNP [dm6]	A	T	3.182e^-4	0.994	NON_SYNONYMOUS_CODING CG18231 SPLICE_SITE_REGION CG18231 DOWNSTREAM CG18233 INTRON CG4174 & 1 other
2R	16514911	2R_16514911_SNP [dm3] 2R_20627406_SNP [dm6]	T	G	3.201e^-4	0.994	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2L	9018779	2L_9018779_INS [dm3] 2L_9018779_INS [dm6]	A	ATACGCCCCGCTCACCCA...	3.202e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19617203	2R_19617203_SNP [dm3] 2R_23729680_SNP [dm6]	T	G	3.213e^-4	0.994	INTRON Sesn
2L	14826563	2L_14826563_SNP [dm3] 2L_14826563_SNP [dm6]	A	G	3.221e^-4	0.994	INTERGENIC
2R	3784783	2R_3784783_SNP [dm3] 2R_7897278_SNP [dm6]	G	T	3.224e^-4	0.994	INTRON CG30377
X	6296849	X_6296849_SNP [dm3] X_6402816_SNP [dm6]	T	C	3.234e^-4	0.994	INTERGENIC
3R	15829755	3R_15829755_SNP [dm3] 3R_20004033_SNP [dm6]	A	G	3.235e^-4	0.994	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
3R	21694717	3R_21694717_SNP [dm3] 3R_25868995_SNP [dm6]	T	C	3.238e^-4	0.994	INTRON CG5890	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	10475377	2R_10475377_SNP [dm3] 2R_14587872_SNP [dm6]	A	T	3.239e^-4	0.994	UTR_3_PRIME ttv
2R	4465353	2R_4465353_INS [dm3] 2R_8577848_INS [dm6]	A	TT	3.249e^-4	0.994	INTRON CG42326
3R	25366324	3R_25366324_SNP [dm3] 3R_29540602_SNP [dm6]	A	C	3.259e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10912479	3L_10912479_INS [dm3] 3L_10919379_INS [dm6]	C	CATTCTCCACC...	3.270e^-4	0.994	INTERGENIC
2R	20991159	2R_20991159_SNP [dm3] 2R_25103636_SNP [dm6]	C	T	3.271e^-4	0.994	INTRON lov
X	20197448	X_20197448_SNP [dm3] X_20326421_SNP [dm6]	A	G	3.272e^-4	0.994	INTRON CG1504
2R	1785839	2R_1785839_SNP [dm3] 2R_5898334_SNP [dm6]	G	T	3.282e^-4	0.994	INTRON CG43366	TF binding site BDTNP1_TFBS_hb
3R	22989617	3R_22989617_SNP [dm3] 3R_27163895_SNP [dm6]	C	T	3.288e^-4	0.994	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG5909 & 1 other
3L	7876156	3L_7876156_INS [dm3] 3L_7883056_INS [dm6]	G	GG	3.309e^-4	0.994	INTRON CG32365
2L	8976950	2L_8976950_SNP [dm3] 2L_8976950_SNP [dm6]	A	G	3.310e^-4	0.994	DOWNSTREAM CG13101 INTERGENIC
3R	16503405	3R_16503405_SNP [dm3] 3R_20677683_SNP [dm6]	C	G	3.314e^-4	0.994	UPSTREAM CR43452 & 1 other EXON CR45024
3R	10264752	3R_10264752_SNP [dm3] 3R_14439030_SNP [dm6]	A	C	3.339e^-4	0.994	INTRON cv-c
2R	20978370	2R_20978370_SNP [dm3] 2R_25090847_SNP [dm6]	C	T	3.369e^-4	0.994	INTRON lov	transposable element FlyBase
2R	17150792	2R_17150792_SNP [dm3] 2R_21263287_SNP [dm6]	G	A	3.371e^-4	0.994	INTRON Rgk3
2L	4688377	2L_4688377_SNP [dm3] 2L_4688377_SNP [dm6]	T	G	3.375e^-4	0.994	SYNONYMOUS_CODING Elba3 DOWNSTREAM CG3251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	21027226	2R_21027226_SNP [dm3] 2R_25139703_SNP [dm6]	C	T	3.378e^-4	0.994	UPSTREAM CG43106 & 1 other INTERGENIC
2R	3591169	2R_3591169_SNP [dm3] 2R_7703664_SNP [dm6]	A	T	3.382e^-4	0.994	UTR_3_PRIME CG34216 DOWNSTREAM CG30493
2R	16462767	2R_16462767_SNP [dm3] 2R_20575262_SNP [dm6]	T	A	3.390e^-4	0.994	INTRON qsm
2R	16462768	2R_16462768_SNP [dm3] 2R_20575263_SNP [dm6]	A	C	3.390e^-4	0.994	INTRON qsm
3L	5910269	3L_5910269_SNP [dm3] 3L_5917169_SNP [dm6]	C	G	3.394e^-4	0.994	UTR_3_PRIME CG13288 DOWNSTREAM CG10483
X	2706369	X_2706369_INS [dm3] X_2812336_INS [dm6]	C	CC	3.395e^-4	0.994	INTRON kirre
2R	4434287	2R_4434287_SNP [dm3] 2R_8546782_SNP [dm6]	T	C	3.409e^-4	0.994	INTERGENIC
3L	2801740	3L_2801740_SNP [dm3] 3L_2801740_SNP [dm6]	T	C	3.409e^-4	0.994	INTRON CG43444
3L	13683191	3L_13683191_SNP [dm3] 3L_13690091_SNP [dm6]	G	A	3.410e^-4	0.994	INTRON bru-3
X	8074826	X_8074826_SNP [dm3] X_8180793_SNP [dm6]	G	T	3.412e^-4	0.994	INTRON sdt
2L	9439369	2L_9439369_SNP [dm3] 2L_9439369_SNP [dm6]	G	C	3.413e^-4	0.994	DOWNSTREAM CG33723 INTRON numb
3L	3882206	3L_3882206_SNP [dm3] 3L_3882206_SNP [dm6]	T	G	3.435e^-4	0.994	INTERGENIC
3L	3882242	3L_3882242_SNP [dm3] 3L_3882242_SNP [dm6]	C	G	3.435e^-4	0.994	INTERGENIC
3L	3882243	3L_3882243_SNP [dm3] 3L_3882243_SNP [dm6]	A	C	3.435e^-4	0.994	INTERGENIC
3R	25000690	3R_25000690_DEL [dm3] 3R_29174968_DEL [dm6]	TT	T	3.442e^-4	0.994	UTR_3_PRIME CG14509 INTRON CG14509
2R	13991141	2R_13991141_SNP [dm3] 2R_18103636_SNP [dm6]	A	G	3.443e^-4	0.994	SYNONYMOUS_CODING CG5756 INTRON CG5756	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10427257	3L_10427257_SNP [dm3] 3L_10434157_SNP [dm6]	G	A	3.483e^-4	0.994	UPSTREAM Ir67c INTERGENIC
3L	9004959	3L_9004959_SNP [dm3] 3L_9011859_SNP [dm6]	T	A	3.491e^-4	0.994	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
2L	825528	2L_825528_SNP [dm3] 2L_825528_SNP [dm6]	A	G	3.516e^-4	0.994	SYNONYMOUS_CODING CG3862 UPSTREAM dock	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_sens
3R	18614115	3R_18614115_SNP [dm3] 3R_22788393_SNP [dm6]	C	A	3.521e^-4	0.994	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	7298297	2L_7298297_SNP [dm3] 2L_7298297_SNP [dm6]	C	T	3.526e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	12406133	X_12406133_SNP [dm3] X_12512100_SNP [dm6]	C	T	3.527e^-4	0.994	INTRON CG2556
X	19716597	X_19716597_DEL [dm3] X_19822564_DEL [dm6]	CC	C	3.537e^-4	0.994	DOWNSTREAM skpE INTERGENIC
3L	6468423	3L_6468423_SNP [dm3] 3L_6475323_SNP [dm6]	T	C	3.544e^-4	0.994	INTRON CG42747
2L	11912221	2L_11912221_SNP [dm3] 2L_11912221_SNP [dm6]	G	T	3.544e^-4	0.994	INTRON Pde1c
3R	25679973	3R_25679973_SNP [dm3] 3R_29854251_SNP [dm6]	G	C	3.545e^-4	0.994	SYNONYMOUS_CODING Cad99C DOWNSTREAM dgt1
2R	8964303	2R_8964303_SNP [dm3] 2R_13076798_SNP [dm6]	G	A	3.545e^-4	0.994	INTRON Drl-2
3R	14411888	3R_14411888_SNP [dm3] 3R_18586166_SNP [dm6]	C	G	3.567e^-4	0.994	INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20395422	3R_20395422_SNP [dm3] 3R_24569700_SNP [dm6]	T	A	3.570e^-4	0.994	INTRON CG13624
2L	17236400	2L_17236400_SNP [dm3] 2L_17236400_SNP [dm6]	G	C	3.576e^-4	0.994	INTRON beat-IIIc
2L	7297431	2L_7297431_SNP [dm3] 2L_7297431_SNP [dm6]	A	T	3.580e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8716744	X_8716744_SNP [dm3] X_8822711_SNP [dm6]	A	T	3.582e^-4	0.994	INTERGENIC
2L	1535175	2L_1535175_SNP [dm3] 2L_1535175_SNP [dm6]	A	T	3.607e^-4	0.994	INTERGENIC
2R	21002996	2R_21002996_SNP [dm3] 2R_25115473_SNP [dm6]	G	T	3.611e^-4	0.994	INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19617188	2R_19617188_SNP [dm3] 2R_23729665_SNP [dm6]	T	A	3.618e^-4	0.994	INTRON Sesn
3R	11957365	3R_11957365_SNP [dm3] 3R_16131643_SNP [dm6]	T	C	3.619e^-4	0.994	INTRON Sb
2R	8796292	2R_8796292_SNP [dm3] 2R_12908787_SNP [dm6]	T	A	3.624e^-4	0.994	INTERGENIC
2R	21011917	2R_21011917_SNP [dm3] 2R_25124394_SNP [dm6]	C	A	3.624e^-4	0.994	INTRON lov
3L	10336479	3L_10336479_SNP [dm3] 3L_10343379_SNP [dm6]	C	A	3.626e^-4	0.994	INTERGENIC
2L	7281732	2L_7281732_SNP [dm3] 2L_7281732_SNP [dm6]	C	T	3.629e^-4	0.994	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20621718	2L_20621718_SNP [dm3] 2L_20621718_SNP [dm6]	C	T	3.632e^-4	0.994	INTRON CR44909
3L	5386713	3L_5386713_SNP [dm3] 3L_5393613_SNP [dm6]	C	T	3.633e^-4	0.994	INTERGENIC
2R	20975653	2R_20975653_SNP [dm3] 2R_25088130_SNP [dm6]	C	A	3.638e^-4	0.994	INTRON lov
2R	9805653	2R_9805653_SNP [dm3] 2R_13918148_SNP [dm6]	T	C	3.663e^-4	0.994	INTRON shot
2L	7297408	2L_7297408_SNP [dm3] 2L_7297408_SNP [dm6]	C	T	3.664e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16841720	2L_16841720_SNP [dm3] 2L_16841720_SNP [dm6]	C	T	3.664e^-4	0.994	UTR_3_PRIME SclA & 1 other DOWNSTREAM CG13284
3R	26518964	3R_26518964_SNP [dm3] 3R_30693242_SNP [dm6]	A	G	3.675e^-4	0.994	DOWNSTREAM CG12069 & 1 other INTERGENIC
2R	18710601	2R_18710601_SNP [dm3] 2R_22823078_SNP [dm6]	C	G	3.682e^-4	0.994	NON_SYNONYMOUS_CODING CG42284 DOWNSTREAM CG30271	TF binding site mE1_TFBS_chinmo
3R	14180450	3R_14180450_SNP [dm3] 3R_18354728_SNP [dm6]	C	T	3.688e^-4	0.994	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16765786	3L_16765786_SNP [dm3] 3L_16772686_SNP [dm6]	A	C	3.693e^-4	0.994	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
2L	5594816	2L_5594816_SNP [dm3] 2L_5594816_SNP [dm6]	G	A	3.698e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17606529	X_17606529_SNP [dm3] X_17712496_SNP [dm6]	C	T	3.713e^-4	0.994	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	917393	2L_917393_SNP [dm3] 2L_917393_SNP [dm6]	G	A	3.713e^-4	0.994	SPLICE_SITE_REGION GluRIIC INTRON GluRIIC
3R	14699636	3R_14699636_SNP [dm3] 3R_18873914_SNP [dm6]	T	C	3.715e^-4	0.994	INTERGENIC
2R	6468825	2R_6468825_SNP [dm3] 2R_10581320_SNP [dm6]	T	A	3.718e^-4	0.994	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9070758	2L_9070758_SNP [dm3] 2L_9070758_SNP [dm6]	G	A	3.726e^-4	0.994	UPSTREAM CR44483 INTRON CG31708
2L	8113257	2L_8113257_SNP [dm3] 2L_8113257_SNP [dm6]	A	C	3.738e^-4	0.994	UTR_3_PRIME Bsg
2R	19593327	2R_19593327_SNP [dm3] 2R_23705804_SNP [dm6]	G	A	3.739e^-4	0.994	SYNONYMOUS_CODING l_2_not DOWNSTREAM l_2_dtl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16462714	2R_16462714_SNP [dm3] 2R_20575209_SNP [dm6]	T	C	3.742e^-4	0.994	INTRON qsm
3R	9788682	3R_9788682_SNP [dm3] 3R_13962960_SNP [dm6]	G	T	3.744e^-4	0.994	SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12618606	3R_12618606_SNP [dm3] 3R_16792884_SNP [dm6]	G	A	3.748e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1332276	3L_1332276_DEL [dm3] 3L_1332276_DEL [dm6]	TATT	T	3.767e^-4	0.994	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
2R	19377263	2R_19377263_SNP [dm3] 2R_23489740_SNP [dm6]	A	T	3.768e^-4	0.994	INTRON CG43795
2R	18936900	2R_18936900_SNP [dm3] 2R_23049377_SNP [dm6]	A	T	3.774e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6584951	2R_6584951_SNP [dm3] 2R_10697446_SNP [dm6]	C	T	3.783e^-4	0.994	INTRON stan
3L	10614970	3L_10614970_SNP [dm3] 3L_10621870_SNP [dm6]	T	C	3.784e^-4	0.994	INTERGENIC
3R	26429928	3R_26429928_SNP [dm3] 3R_30604206_SNP [dm6]	A	G	3.787e^-4	0.994	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3R	10171572	3R_10171572_SNP [dm3] 3R_14345850_SNP [dm6]	T	C	3.788e^-4	0.994	INTRON NK7.1
3R	5861890	3R_5861890_SNP [dm3] 3R_10036168_SNP [dm6]	G	T	3.790e^-4	0.994	INTRON Mical	TF binding site mE1_TFBS_Trl
2L	636745	2L_636745_SNP [dm3] 2L_636745_SNP [dm6]	A	C	3.792e^-4	0.994	INTERGENIC
3R	14168908	3R_14168908_SNP [dm3] 3R_18343186_SNP [dm6]	C	G	3.792e^-4	0.994	INTRON CG15803
3L	5417144	3L_5417144_SNP [dm3] 3L_5424044_SNP [dm6]	T	A	3.794e^-4	0.994	UPSTREAM CG34391 INTERGENIC
2R	14524485	2R_14524485_SNP [dm3] 2R_18636980_SNP [dm6]	G	T	3.796e^-4	0.994	NON_SYNONYMOUS_CODING CG30122	TF binding site mE1_TFBS_inv
X	18690851	X_18690851_SNP [dm3] X_18796818_SNP [dm6]	A	G	3.798e^-4	0.994	UPSTREAM bnb INTRON Pk17E & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16639658	2R_16639658_SNP [dm3] 2R_20752153_SNP [dm6]	G	T	3.811e^-4	0.994	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
2R	4167823	2R_4167823_SNP [dm3] 2R_8280318_SNP [dm6]	T	C	3.813e^-4	0.994	INTERGENIC
3R	4915619	3R_4915619_SNP [dm3] 3R_9089897_SNP [dm6]	C	G	3.824e^-4	0.994	INTRON pum
X	17164312	X_17164312_SNP [dm3] X_17270279_SNP [dm6]	G	A	3.832e^-4	0.994	INTRON f
3L	4745319	3L_4745319_SNP [dm3] 3L_4745319_SNP [dm6]	A	T	3.832e^-4	0.994	DOWNSTREAM CR43882 INTRON RhoGEF64C
2R	18835711	2R_18835711_SNP [dm3] 2R_22948188_SNP [dm6]	T	C	3.834e^-4	0.994	INTERGENIC
2R	16286726	2R_16286726_SNP [dm3] 2R_20399221_SNP [dm6]	G	A	3.834e^-4	0.994	INTERGENIC
X	19716711	X_19716711_SNP [dm3] X_19822678_SNP [dm6]	T	C	3.841e^-4	0.994	DOWNSTREAM skpE INTERGENIC
X	19716714	X_19716714_SNP [dm3] X_19822681_SNP [dm6]	T	C	3.841e^-4	0.994	DOWNSTREAM skpE INTERGENIC
3L	10155046	3L_10155046_SNP [dm3] 3L_10161946_SNP [dm6]	G	A	3.843e^-4	0.994	INTRON dpr10
2L	12997931	2L_12997931_SNP [dm3] 2L_12997931_SNP [dm6]	A	G	3.845e^-4	0.994	SPLICE_SITE_REGION CG12404 INTRON CG12404
2R	10349955	2R_10349955_SNP [dm3] 2R_14462450_SNP [dm6]	A	C	3.849e^-4	0.994	SYNONYMOUS_CODING Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5924273	3R_5924273_SNP [dm3] 3R_10098551_SNP [dm6]	G	A	3.853e^-4	0.994	EXON CR43459
2R	18835716	2R_18835716_SNP [dm3] 2R_22948193_SNP [dm6]	C	A	3.855e^-4	0.994	INTERGENIC
3R	10520489	3R_10520489_SNP [dm3] 3R_14694767_SNP [dm6]	A	G	3.858e^-4	0.994	INTRON Meltrin
2R	21058802	2R_21058802_SNP [dm3] 2R_25171279_SNP [dm6]	G	A	3.859e^-4	0.994	DOWNSTREAM Sfp60F INTERGENIC
2R	4416978	2R_4416978_SNP [dm3] 2R_8529473_SNP [dm6]	A	T	3.862e^-4	0.994	INTRON mtt
2R	4417011	2R_4417011_SNP [dm3] 2R_8529506_SNP [dm6]	C	T	3.862e^-4	0.994	INTRON mtt
3L	11790178	3L_11790178_SNP [dm3] 3L_11797078_SNP [dm6]	G	A	3.864e^-4	0.994	SYNONYMOUS_CODING Klp68D
3R	8071292	3R_8071292_SNP [dm3] 3R_12245570_SNP [dm6]	G	A	3.868e^-4	0.994	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5031784	3L_5031784_SNP [dm3] 3L_5031784_SNP [dm6]	T	C	3.872e^-4	0.994	INTRON Con
3R	26080823	3R_26080823_SNP [dm3] 3R_30255101_SNP [dm6]	A	G	3.880e^-4	0.994	INTERGENIC
2R	6717287	2R_6717287_SNP [dm3] 2R_10829782_SNP [dm6]	T	C	3.880e^-4	0.994	INTRON CG12344
3R	7166303	3R_7166303_SNP [dm3] 3R_11340581_SNP [dm6]	C	T	3.889e^-4	0.994	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10222644	3R_10222644_DEL [dm3] 3R_14396922_DEL [dm6]	TA	G	3.890e^-4	0.994	UPSTREAM mir-2281 INTRON cv-c
3R	7791700	3R_7791700_SNP [dm3] 3R_11965978_SNP [dm6]	G	A	3.894e^-4	0.994	SYNONYMOUS_CODING CG12213	TF binding site mE1_TFBS_cad
2R	17209991	2R_17209991_SNP [dm3] 2R_21322486_SNP [dm6]	G	C	3.896e^-4	0.994	UPSTREAM dom INTRON CG30394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	21019534	2R_21019534_SNP [dm3] 2R_25132011_SNP [dm6]	A	T	3.904e^-4	0.994	INTRON lov	TF binding site mE1_TFBS_Kr
2L	8111870	2L_8111870_SNP [dm3] 2L_8111870_SNP [dm6]	T	C	3.905e^-4	0.994	UTR_3_PRIME Bsg
2L	8968237	2L_8968237_SNP [dm3] 2L_8968237_SNP [dm6]	G	A	3.908e^-4	0.994	NON_SYNONYMOUS_CODING CG18088
3L	15249726	3L_15249726_SNP [dm3] 3L_15256626_SNP [dm6]	C	G	3.912e^-4	0.994	INTERGENIC
3L	10905603	3L_10905603_SNP [dm3] 3L_10912503_SNP [dm6]	G	C	3.912e^-4	0.994	INTERGENIC
2R	17095087	2R_17095087_SNP [dm3] 2R_21207582_SNP [dm6]	G	T	3.916e^-4	0.994	INTRON CG44245 & 1 other
3L	11726169	3L_11726169_SNP [dm3] 3L_11733069_SNP [dm6]	A	G	3.926e^-4	0.994	SYNONYMOUS_CODING CG32087 DOWNSTREAM CG6024	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13816548	3R_13816548_SNP [dm3] 3R_17990826_SNP [dm6]	C	A	3.945e^-4	0.994	INTRON cpo
3L	18593227	3L_18593227_SNP [dm3] 3L_18600127_SNP [dm6]	C	T	3.954e^-4	0.994	DOWNSTREAM CG13380 & 1 other INTERGENIC
3L	8796120	3L_8796120_SNP [dm3] 3L_8803020_SNP [dm6]	C	T	3.957e^-4	0.994	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023	TF binding site mE1_TFBS_sens
3L	8796141	3L_8796141_SNP [dm3] 3L_8803041_SNP [dm6]	C	T	3.957e^-4	0.994	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
3R	25437122	3R_25437122_SNP [dm3] 3R_29611400_SNP [dm6]	C	T	3.973e^-4	0.994	INTRON alph	TF binding site mE1_TFBS_chinmo
3R	25437126	3R_25437126_SNP [dm3] 3R_29611404_SNP [dm6]	C	G	3.973e^-4	0.994	INTRON alph	TF binding site mE1_TFBS_chinmo
3L	12674256	3L_12674256_SNP [dm3] 3L_12681156_SNP [dm6]	C	T	3.975e^-4	0.994	INTERGENIC
3L	12674258	3L_12674258_MNP [dm3] 3L_12681158_MNP [dm6]	GCC	TGA	3.975e^-4	0.994	INTERGENIC
2L	583064	2L_583064_SNP [dm3] 2L_583064_SNP [dm6]	A	G	3.982e^-4	0.994	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4872015	2R_4872015_SNP [dm3] 2R_8984510_SNP [dm6]	A	T	3.987e^-4	0.994	INTRON CG8213	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8842295	2R_8842295_SNP [dm3] 2R_12954790_SNP [dm6]	G	A	4.009e^-4	0.994	SYNONYMOUS_CODING CG13321	TF binding site mE1_TFBS_sens
3R	17896490	3R_17896490_SNP [dm3] 3R_22070768_SNP [dm6]	T	C	4.017e^-4	0.994	INTRON how	TF binding site mE1_TFBS_HSA
3L	13246421	3L_13246421_SNP [dm3] 3L_13253321_SNP [dm6]	C	T	4.019e^-4	0.994	INTRON caps	TF binding site mE1_TFBS_inv
3R	16503398	3R_16503398_SNP [dm3] 3R_20677676_SNP [dm6]	G	A	4.023e^-4	0.994	UPSTREAM CR43452 & 1 other EXON CR45024
3L	15267585	3L_15267585_DEL [dm3] 3L_15274485_DEL [dm6]	CGATT	C	4.026e^-4	0.994	INTERGENIC
2L	7449932	2L_7449932_INS [dm3] 2L_7449932_INS [dm6]	A	AA	4.027e^-4	0.994	UTR_5_PRIME santa-maria INTRON santa-maria
3R	16215871	3R_16215871_INS [dm3] 3R_20390149_INS [dm6]	T	TGCT	4.029e^-4	0.994	CODON_INSERTION Gfrl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18690716	X_18690716_SNP [dm3] X_18796683_SNP [dm6]	T	C	4.031e^-4	0.994	UPSTREAM bnb INTRON Pk17E & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10614986	3L_10614986_SNP [dm3] 3L_10621886_SNP [dm6]	A	T	4.038e^-4	0.994	INTERGENIC
3L	19218297	3L_19218297_SNP [dm3] 3L_19225197_SNP [dm6]	A	T	4.052e^-4	0.994	INTRON fz2
2R	19593546	2R_19593546_SNP [dm3] 2R_23706023_SNP [dm6]	T	C	4.054e^-4	0.994	SYNONYMOUS_CODING l_2_not UPSTREAM l_2_tid DOWNSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15142433	2L_15142433_SNP [dm3] 2L_15142433_SNP [dm6]	T	C	4.055e^-4	0.994	INTERGENIC
2L	5887499	2L_5887499_SNP [dm3] 2L_5887499_SNP [dm6]	G	T	4.056e^-4	0.994	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other EXON CR44577
3L	4009958	3L_4009958_SNP [dm3] 3L_4009958_SNP [dm6]	T	C	4.067e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10146822	3L_10146822_SNP [dm3] 3L_10153722_SNP [dm6]	T	C	4.070e^-4	0.994	NON_SYNONYMOUS_CODING dpr10 DOWNSTREAM CG8072 INTRON dpr10
2L	16482750	2L_16482750_INS [dm3] 2L_16482750_INS [dm6]	T	TT	4.071e^-4	0.994	INTRON dac	regulatory region REDfly_CRMs
3L	10099400	3L_10099400_SNP [dm3] 3L_10106300_SNP [dm6]	T	G	4.074e^-4	0.994	INTRON dpr6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3708557	X_3708557_SNP [dm3] X_3814524_SNP [dm6]	C	T	4.081e^-4	0.994	INTRON ec
2L	21713744	2L_21713744_SNP [dm3] 2L_21713744_SNP [dm6]	A	T	4.093e^-4	0.994	INTRON CG31619
3L	5386712	3L_5386712_SNP [dm3] 3L_5393612_SNP [dm6]	G	A	4.097e^-4	0.994	INTERGENIC
2L	7033699	2L_7033699_SNP [dm3] 2L_7033699_SNP [dm6]	G	T	4.103e^-4	0.994	INTRON CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	5331139	X_5331139_SNP [dm3] X_5437106_SNP [dm6]	G	A	4.109e^-4	0.994	INTERGENIC
3L	10156441	3L_10156441_SNP [dm3] 3L_10163341_SNP [dm6]	T	A	4.111e^-4	0.994	INTRON dpr10
3R	9821313	3R_9821313_SNP [dm3] 3R_13995591_SNP [dm6]	C	A	4.120e^-4	0.994	INTRON rdx
3L	4909314	3L_4909314_SNP [dm3] 3L_4909314_SNP [dm6]	C	T	4.122e^-4	0.994	INTERGENIC
3R	10745761	3R_10745761_SNP [dm3] 3R_14920039_SNP [dm6]	A	G	4.141e^-4	0.994	NON_SYNONYMOUS_CODING Sdr
2R	17644044	2R_17644044_SNP [dm3] 2R_21756539_SNP [dm6]	T	A	4.146e^-4	0.994	UPSTREAM Grx-1 INTERGENIC
2L	1113507	2L_1113507_SNP [dm3] 2L_1113507_SNP [dm6]	G	T	4.148e^-4	0.994	SPLICE_SITE_REGION CG14340 DOWNSTREAM CG14339 INTRON CG14340
3L	3266198	3L_3266198_SNP [dm3] 3L_3266198_SNP [dm6]	T	A	4.152e^-4	0.994	INTRON ckd	TF binding site BDTNP1_TFBS_dl
2R	10112962	2R_10112962_SNP [dm3] 2R_14225457_SNP [dm6]	G	T	4.175e^-4	0.994	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
3L	1288407	3L_1288407_SNP [dm3] 3L_1288407_SNP [dm6]	T	A	4.176e^-4	0.994	DOWNSTREAM CG32333 INTRON CG32333
3L	10147778	3L_10147778_SNP [dm3] 3L_10154678_SNP [dm6]	T	G	4.187e^-4	0.994	INTRON dpr10
3L	10147780	3L_10147780_INS [dm3] 3L_10154680_INS [dm6]	T	TTACGCTAATATTATCTTAT...	4.187e^-4	0.994	INTRON dpr10
3L	10147793	3L_10147793_INS [dm3] 3L_10154693_INS [dm6]	T	TGG	4.187e^-4	0.994	INTRON dpr10
X	17193759	X_17193759_SNP [dm3] X_17299726_SNP [dm6]	G	T	4.190e^-4	0.994	INTRON CG5445 & 1 other
2L	8967660	2L_8967660_SNP [dm3] 2L_8967660_SNP [dm6]	T	A	4.192e^-4	0.994	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2R	9803676	2R_9803676_SNP [dm3] 2R_13916171_SNP [dm6]	A	C	4.192e^-4	0.994	INTRON shot
3R	10191910	3R_10191910_SNP [dm3] 3R_14366188_SNP [dm6]	T	C	4.206e^-4	0.994	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	16338472	2R_16338472_SNP [dm3] 2R_20450967_SNP [dm6]	C	A	4.218e^-4	0.994	INTRON CG12484
3R	9744077	3R_9744077_SNP [dm3] 3R_13918355_SNP [dm6]	G	A	4.244e^-4	0.994	INTERGENIC
3L	12674239	3L_12674239_SNP [dm3] 3L_12681139_SNP [dm6]	G	A	4.247e^-4	0.994	INTERGENIC
X	8716469	X_8716469_DEL [dm3] X_8822436_DEL [dm6]	AT	A	4.249e^-4	0.994	INTERGENIC
X	20197431	X_20197431_SNP [dm3] X_20326404_SNP [dm6]	C	A	4.261e^-4	0.994	INTRON CG1504
2L	917406	2L_917406_SNP [dm3] 2L_917406_SNP [dm6]	G	A	4.264e^-4	0.994	INTRON GluRIIC
3R	10184370	3R_10184370_SNP [dm3] 3R_14358648_SNP [dm6]	A	G	4.265e^-4	0.994	SYNONYMOUS_CODING CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2420729	2L_2420729_SNP [dm3] 2L_2420729_SNP [dm6]	T	A	4.267e^-4	0.994	UPSTREAM CG34447 & 1 other INTERGENIC
2R	4416934	2R_4416934_SNP [dm3] 2R_8529429_SNP [dm6]	C	G	4.273e^-4	0.994	INTRON mtt
2L	10088402	2L_10088402_SNP [dm3] 2L_10088402_SNP [dm6]	G	A	4.273e^-4	0.994	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10940734	3R_10940734_SNP [dm3] 3R_15115012_SNP [dm6]	G	A	4.274e^-4	0.994	INTRON CG42788
3R	12460782	3R_12460782_SNP [dm3] 3R_16635060_SNP [dm6]	A	C	4.280e^-4	0.994	INTRON Fas1
3R	16051340	3R_16051340_SNP [dm3] 3R_20225618_SNP [dm6]	A	G	4.283e^-4	0.994	INTRON Nlg4
X	19716642	X_19716642_DEL [dm3] X_19822609_DEL [dm6]	GGTCCTCCTG	G	4.285e^-4	0.994	DOWNSTREAM skpE INTERGENIC
2R	5213139	2R_5213139_SNP [dm3] 2R_9325634_SNP [dm6]	A	G	4.295e^-4	0.994	INTRON CG13954 & 1 other
2L	16843057	2L_16843057_SNP [dm3] 2L_16843057_SNP [dm6]	C	T	4.297e^-4	0.994	UTR_3_PRIME CG13284 DOWNSTREAM CG13284
2R	18497098	2R_18497098_SNP [dm3] 2R_22609593_SNP [dm6]	C	T	4.299e^-4	0.994	SYNONYMOUS_CODING CG4329 DOWNSTREAM Vps20	TF binding site mE1_TFBS_sens
2R	17104344	2R_17104344_SNP [dm3] 2R_21216839_SNP [dm6]	A	C	4.305e^-4	0.994	NON_SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8795907	2R_8795907_SNP [dm3] 2R_12908402_SNP [dm6]	A	T	4.315e^-4	0.994	INTERGENIC
3R	15402139	3R_15402139_SNP [dm3] 3R_19576417_SNP [dm6]	C	T	4.316e^-4	0.994	INTRON Dys
2R	4418233	2R_4418233_SNP [dm3] 2R_8530728_SNP [dm6]	A	C	4.317e^-4	0.994	INTRON mtt
2L	14433781	2L_14433781_DEL [dm3] 2L_14433781_DEL [dm6]	ACACTTTGAGAATA...	A	4.318e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	11267231	3R_11267231_SNP [dm3] 3R_15441509_SNP [dm6]	T	C	4.321e^-4	0.994	SYNONYMOUS_CODING Act88F DOWNSTREAM AdamTS-A	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15142410	2L_15142410_SNP [dm3] 2L_15142410_SNP [dm6]	T	C	4.328e^-4	0.994	INTERGENIC
2L	15141049	2L_15141049_SNP [dm3] 2L_15141049_SNP [dm6]	A	T	4.329e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7108528	2L_7108528_SNP [dm3] 2L_7108528_SNP [dm6]	A	C	4.331e^-4	0.994	INTRON Pvf3
3L	4745352	3L_4745352_SNP [dm3] 3L_4745352_SNP [dm6]	C	T	4.341e^-4	0.994	DOWNSTREAM CR43882 INTRON RhoGEF64C
3L	1288404	3L_1288404_SNP [dm3] 3L_1288404_SNP [dm6]	A	G	4.346e^-4	0.994	DOWNSTREAM CG32333 INTRON CG32333
2R	14815290	2R_14815290_SNP [dm3] 2R_18927785_SNP [dm6]	T	A	4.363e^-4	0.994	INTRON sano
3R	27237997	3R_27237997_SNP [dm3] 3R_31412275_SNP [dm6]	G	C	4.369e^-4	0.994	INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	6488162	3L_6488162_SNP [dm3] 3L_6495062_SNP [dm6]	T	C	4.371e^-4	0.994	UPSTREAM sfl INTRON CG10144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12674185	3L_12674185_SNP [dm3] 3L_12681085_SNP [dm6]	A	T	4.374e^-4	0.994	INTERGENIC
3R	9956362	3R_9956362_SNP [dm3] 3R_14130640_SNP [dm6]	C	G	4.379e^-4	0.994	DOWNSTREAM CG14356 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	16765776	3L_16765776_SNP [dm3] 3L_16772676_SNP [dm6]	T	A	4.392e^-4	0.994	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
2L	1876191	2L_1876191_SNP [dm3] 2L_1876191_SNP [dm6]	A	G	4.398e^-4	0.994	INTRON CG31663
2L	9070748	2L_9070748_SNP [dm3] 2L_9070748_SNP [dm6]	A	C	4.402e^-4	0.994	UPSTREAM CR44483 INTRON CG31708
2R	8539584	2R_8539584_SNP [dm3] 2R_12652079_SNP [dm6]	T	A	4.429e^-4	0.994	UPSTREAM ZnT49B INTRON CG8778
X	5872711	X_5872711_SNP [dm3] X_5978678_SNP [dm6]	A	G	4.429e^-4	0.994	INTRON Grip
3L	1586458	3L_1586458_SNP [dm3] 3L_1586458_SNP [dm6]	T	A	4.430e^-4	0.994	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	16876177	X_16876177_SNP [dm3] X_16982144_SNP [dm6]	T	C	4.430e^-4	0.994	INTRON CG45002
3L	2806653	3L_2806653_SNP [dm3] 3L_2806653_SNP [dm6]	T	A	4.434e^-4	0.994	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8797951	2R_8797951_SNP [dm3] 2R_12910446_SNP [dm6]	T	G	4.435e^-4	0.994	INTERGENIC
2R	20269586	2R_20269586_SNP [dm3] 2R_24382063_SNP [dm6]	G	T	4.437e^-4	0.994	INTRON mAChR-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16007068	2L_16007068_SNP [dm3] 2L_16007068_SNP [dm6]	T	A	4.444e^-4	0.994	UPSTREAM CG31820 DOWNSTREAM CR44844 INTRON beat-Ic
2L	10266464	2L_10266464_SNP [dm3] 2L_10266464_SNP [dm6]	C	T	4.445e^-4	0.994	SYNONYMOUS_CODING Mob3 UPSTREAM CG4953
2R	17738658	2R_17738658_SNP [dm3] 2R_21851153_SNP [dm6]	G	A	4.459e^-4	0.994	INTERGENIC
3R	26464568	3R_26464568_SNP [dm3] 3R_30638846_SNP [dm6]	A	G	4.460e^-4	0.994	INTERGENIC
3L	19296284	3L_19296284_SNP [dm3] 3L_19303184_SNP [dm6]	T	C	4.464e^-4	0.994	SYNONYMOUS_CODING pip DOWNSTREAM pip INTRON pip	TF binding site mE1_TFBS_sens
2L	13701246	2L_13701246_SNP [dm3] 2L_13701246_SNP [dm6]	A	C	4.466e^-4	0.994	INTRON CG31814
2L	8964893	2L_8964893_SNP [dm3] 2L_8964893_SNP [dm6]	A	T	4.468e^-4	0.994	UPSTREAM CG32984 DOWNSTREAM CG32985 INTERGENIC
2L	17749784	2L_17749784_SNP [dm3] 2L_17749784_SNP [dm6]	C	T	4.470e^-4	0.994	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22060959	3R_22060959_INS [dm3] 3R_26235237_INS [dm6]	T	TT	4.472e^-4	0.994	UPSTREAM CR42745 DOWNSTREAM CG12290 INTERGENIC
3L	6468498	3L_6468498_SNP [dm3] 3L_6475398_SNP [dm6]	G	A	4.477e^-4	0.994	INTRON CG42747
3L	12778937	3L_12778937_SNP [dm3] 3L_12785837_SNP [dm6]	G	T	4.477e^-4	0.994	INTRON Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6670751	2R_6670751_SNP [dm3] 2R_10783246_SNP [dm6]	A	G	4.478e^-4	0.994	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	10302747	2R_10302747_SNP [dm3] 2R_14415242_SNP [dm6]	C	T	4.482e^-4	0.994	INTERGENIC
3L	2805769	3L_2805769_SNP [dm3] 3L_2805769_SNP [dm6]	G	T	4.485e^-4	0.994	INTRON CG43444
2L	8965791	2L_8965791_SNP [dm3] 2L_8965791_SNP [dm6]	A	T	4.485e^-4	0.994	NON_SYNONYMOUS_CODING CG32984
2L	7449800	2L_7449800_SNP [dm3] 2L_7449800_SNP [dm6]	A	T	4.508e^-4	0.994	UTR_5_PRIME santa-maria INTRON santa-maria
2R	7664359	2R_7664359_SNP [dm3] 2R_11776854_SNP [dm6]	A	G	4.511e^-4	0.994	INTRON ths	TF binding site mE1_TFBS_inv
X	18878310	X_18878310_SNP [dm3] X_18984277_SNP [dm6]	T	A	4.520e^-4	0.994	INTRON CG43759
2L	9073809	2L_9073809_SNP [dm3] 2L_9073809_SNP [dm6]	C	T	4.524e^-4	0.994	INTERGENIC
3L	14559107	3L_14559107_INS [dm3] 3L_14566007_INS [dm6]	T	TT	4.524e^-4	0.994	INTERGENIC
3R	26080562	3R_26080562_SNP [dm3] 3R_30254840_SNP [dm6]	C	A	4.527e^-4	0.994	DOWNSTREAM CG18404 INTERGENIC
3R	25181505	3R_25181505_SNP [dm3] 3R_29355783_SNP [dm6]	T	C	4.529e^-4	0.994	DOWNSTREAM CR45547 INTERGENIC
2R	17782629	2R_17782629_SNP [dm3] 2R_21895124_SNP [dm6]	T	A	4.533e^-4	0.994	INTRON Fili
2R	11667330	2R_11667330_SNP [dm3] 2R_15779825_SNP [dm6]	A	G	4.533e^-4	0.994	DOWNSTREAM Zasp52 INTRON Zasp52
2L	11506037	2L_11506037_SNP [dm3] 2L_11506037_SNP [dm6]	G	A	4.534e^-4	0.994	INTRON spz4	TF binding site mE1_TFBS_cad
3R	25114587	3R_25114587_SNP [dm3] 3R_29288865_SNP [dm6]	T	A	4.550e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	25301300	3R_25301300_INS [dm3] 3R_29475578_INS [dm6]	A	ATA	4.552e^-4	0.994	INTRON Ptp99A
3L	12738647	3L_12738647_SNP [dm3] 3L_12745547_SNP [dm6]	G	A	4.554e^-4	0.994	DOWNSTREAM CG32112 INTRON CG32109
2R	7523413	2R_7523413_SNP [dm3] 2R_11635908_SNP [dm6]	G	A	4.560e^-4	0.994	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11102475	3R_11102475_SNP [dm3] 3R_15276753_SNP [dm6]	G	C	4.562e^-4	0.994	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17692121	3R_17692121_SNP [dm3] 3R_21866399_SNP [dm6]	T	C	4.568e^-4	0.994	SYNONYMOUS_CODING CG6569 DOWNSTREAM CG6569 & 1 other
3L	2716028	3L_2716028_SNP [dm3] 3L_2716028_SNP [dm6]	G	C	4.570e^-4	0.994	INTERGENIC
3R	24526619	3R_24526619_DEL [dm3] 3R_28700897_DEL [dm6]	GCAGCAGCATCAGCAT...	G	4.572e^-4	0.994	CODON_DELETION htt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13492403	3L_13492403_SNP [dm3] 3L_13499303_SNP [dm6]	T	C	4.577e^-4	0.994	INTRON Tgi	TF binding site mE1_TFBS_chinmo
3R	25292089	3R_25292089_SNP [dm3] 3R_29466367_SNP [dm6]	C	A	4.581e^-4	0.994	INTRON Ptp99A
3R	23776803	3R_23776803_SNP [dm3] 3R_27951081_SNP [dm6]	T	C	4.591e^-4	0.994	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad
3L	18402375	3L_18402375_SNP [dm3] 3L_18409275_SNP [dm6]	T	A	4.594e^-4	0.994	INTERGENIC
2R	20366740	2R_20366740_SNP [dm3] 2R_24479217_SNP [dm6]	G	A	4.604e^-4	0.994	INTRON CG13579
X	12462638	X_12462638_SNP [dm3] X_12568605_SNP [dm6]	C	G	4.606e^-4	0.994	UPSTREAM CG43921 DOWNSTREAM CG11138 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12618459	3R_12618459_SNP [dm3] 3R_16792737_SNP [dm6]	T	C	4.606e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8667610	3R_8667610_SNP [dm3] 3R_12841888_SNP [dm6]	A	T	4.610e^-4	0.994	UTR_3_PRIME beat-Va
2L	917487	2L_917487_SNP [dm3] 2L_917487_SNP [dm6]	C	T	4.613e^-4	0.994	SYNONYMOUS_CODING GluRIIC
X	16876191	X_16876191_SNP [dm3] X_16982158_SNP [dm6]	C	T	4.615e^-4	0.994	INTRON CG45002
2R	17781714	2R_17781714_SNP [dm3] 2R_21894209_SNP [dm6]	A	T	4.621e^-4	0.994	INTRON Fili
2L	17161570	2L_17161570_SNP [dm3] 2L_17161570_SNP [dm6]	G	C	4.625e^-4	0.994	INTRON beat-IIIa & 1 other
X	18978821	X_18978821_SNP [dm3] X_19084788_SNP [dm6]	T	C	4.627e^-4	0.994	DOWNSTREAM CR45503 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	13682988	3L_13682988_SNP [dm3] 3L_13689888_SNP [dm6]	A	G	4.632e^-4	0.994	INTRON bru-3
X	21164521	X_21164521_SNP [dm3] X_21293494_SNP [dm6]	C	T	4.641e^-4	0.994	SYNONYMOUS_CODING CG1718
3R	10428631	3R_10428631_SNP [dm3] 3R_14602909_SNP [dm6]	T	G	4.649e^-4	0.994	UPSTREAM stumps INTRON stumps
2R	21002965	2R_21002965_SNP [dm3] 2R_25115442_SNP [dm6]	A	G	4.657e^-4	0.994	INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8980602	2L_8980602_SNP [dm3] 2L_8980602_SNP [dm6]	A	T	4.663e^-4	0.994	UPSTREAM CG18662 INTRON CG13101
2R	18835713	2R_18835713_SNP [dm3] 2R_22948190_SNP [dm6]	C	T	4.663e^-4	0.994	INTERGENIC
2R	7488701	2R_7488701_SNP [dm3] 2R_11601196_SNP [dm6]	T	A	4.673e^-4	0.994	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11773758	3R_11773758_SNP [dm3] 3R_15948036_SNP [dm6]	G	A	4.689e^-4	0.994	INTRON Sap47
3L	8796200	3L_8796200_SNP [dm3] 3L_8803100_SNP [dm6]	G	T	4.695e^-4	0.994	SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
2R	16008223	2R_16008223_DEL [dm3] 2R_20120718_DEL [dm6]	TACTT	T	4.706e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16101288	2R_16101288_SNP [dm3] 2R_20213783_SNP [dm6]	T	C	4.708e^-4	0.994	INTERGENIC
2L	20621517	2L_20621517_SNP [dm3] 2L_20621517_SNP [dm6]	G	C	4.712e^-4	0.994	INTRON CR44909
2R	7485951	2R_7485951_SNP [dm3] 2R_11598446_SNP [dm6]	A	T	4.713e^-4	0.994	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
2L	8981631	2L_8981631_SNP [dm3] 2L_8981631_SNP [dm6]	A	G	4.721e^-4	0.994	DOWNSTREAM CG18662 INTRON CG13101
2L	7281505	2L_7281505_SNP [dm3] 2L_7281505_SNP [dm6]	T	A	4.739e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7281509	2L_7281509_SNP [dm3] 2L_7281509_SNP [dm6]	A	T	4.739e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7281591	2L_7281591_SNP [dm3] 2L_7281591_SNP [dm6]	T	A	4.739e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8999172	3L_8999172_SNP [dm3] 3L_9006072_SNP [dm6]	A	T	4.743e^-4	0.994	INTRON Doc3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16101291	2R_16101291_SNP [dm3] 2R_20213786_SNP [dm6]	A	C	4.752e^-4	0.994	INTERGENIC
3L	3999669	3L_3999669_SNP [dm3] 3L_3999669_SNP [dm6]	C	T	4.764e^-4	0.994	INTERGENIC
3R	12756148	3R_12756148_SNP [dm3] 3R_16930426_SNP [dm6]	C	G	4.775e^-4	0.994	INTRON Abd-B
3R	7856930	3R_7856930_SNP [dm3] 3R_12031208_SNP [dm6]	C	G	4.778e^-4	0.994	NON_SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42504 & 1 other
3R	27237996	3R_27237996_SNP [dm3] 3R_31412274_SNP [dm6]	T	G	4.781e^-4	0.994	INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	8968391	2L_8968391_INS [dm3] 2L_8968391_INS [dm6]	A	ACATATTTATATAGATA...	4.792e^-4	0.994	INTRON CG18088
3L	14230856	3L_14230856_SNP [dm3] 3L_14237756_SNP [dm6]	G	A	4.794e^-4	0.994	NON_SYNONYMOUS_CODING CG7906 DOWNSTREAM CR45399
3L	6488134	3L_6488134_SNP [dm3] 3L_6495034_SNP [dm6]	G	A	4.798e^-4	0.994	UPSTREAM sfl INTRON CG10144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	10203881	3R_10203881_SNP [dm3] 3R_14378159_SNP [dm6]	G	A	4.801e^-4	0.994	UPSTREAM CR44943 INTERGENIC	TF binding site mE1_TFBS_inv
3R	25437026	3R_25437026_SNP [dm3] 3R_29611304_SNP [dm6]	G	T	4.804e^-4	0.994	INTRON alph	TF binding site mE1_TFBS_chinmo
2L	9114260	2L_9114260_SNP [dm3] 2L_9114260_SNP [dm6]	C	G	4.826e^-4	0.994	DOWNSTREAM Or30a INTERGENIC
3L	1586464	3L_1586464_SNP [dm3] 3L_1586464_SNP [dm6]	A	G	4.832e^-4	0.994	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	6040269	2R_6040269_SNP [dm3] 2R_10152764_SNP [dm6]	T	A	4.843e^-4	0.994	INTRON KCNQ EXON CR45133	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12365873	3L_12365873_SNP [dm3] 3L_12372773_SNP [dm6]	G	T	4.851e^-4	0.994	SPLICE_SITE_REGION Ncc69 INTRON Ncc69
X	12757492	X_12757492_SNP [dm3] X_12863459_SNP [dm6]	G	T	4.854e^-4	0.994	INTRON Pde9
3L	14586061	3L_14586061_SNP [dm3] 3L_14592961_SNP [dm6]	A	T	4.859e^-4	0.994	INTRON HGTX
3R	22727403	3R_22727403_SNP [dm3] 3R_26901681_SNP [dm6]	G	A	4.862e^-4	0.994	INTRON T48	regulatory region REDfly_CRMs
3L	18208437	3L_18208437_SNP [dm3] 3L_18215337_SNP [dm6]	C	G	4.865e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13761016	2R_13761016_DEL [dm3] 2R_17873511_DEL [dm6]	AAT	A	4.868e^-4	0.994	UPSTREAM Elk INTERGENIC
3L	4745355	3L_4745355_SNP [dm3] 3L_4745355_SNP [dm6]	C	A	4.870e^-4	0.994	DOWNSTREAM CR43882 INTRON RhoGEF64C
2L	3914410	2L_3914410_SNP [dm3] 2L_3914410_SNP [dm6]	A	T	4.874e^-4	0.994	UPSTREAM CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6504030	2R_6504030_DEL [dm3] 2R_10616525_DEL [dm6]	ACCTA	T	4.875e^-4	0.994	UTR_3_PRIME psq DOWNSTREAM psq
3L	9973323	3L_9973323_SNP [dm3] 3L_9980223_SNP [dm6]	G	A	4.882e^-4	0.994	INTRON dpr6
3R	20364053	3R_20364053_SNP [dm3] 3R_24538331_SNP [dm6]	G	A	4.883e^-4	0.994	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	12719128	X_12719128_SNP [dm3] X_12825095_SNP [dm6]	A	C	4.887e^-4	0.994	INTRON Pde9
3R	10080395	3R_10080395_SNP [dm3] 3R_14254673_SNP [dm6]	G	C	4.888e^-4	0.994	INTRON Aats-met
3R	19638449	3R_19638449_SNP [dm3] 3R_23812727_SNP [dm6]	C	T	4.890e^-4	0.994	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3L	5959233	3L_5959233_SNP [dm3] 3L_5966133_SNP [dm6]	G	A	4.892e^-4	0.994	INTERGENIC
2R	13862511	2R_13862511_SNP [dm3] 2R_17975006_SNP [dm6]	A	T	4.897e^-4	0.994	DOWNSTREAM dpr13 INTERGENIC
2R	14989553	2R_14989553_SNP [dm3] 2R_19102048_SNP [dm6]	G	C	4.907e^-4	0.994	INTRON 5-HT1A
2R	6169883	2R_6169883_SNP [dm3] 2R_10282378_SNP [dm6]	A	G	4.912e^-4	0.994	NON_SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26455782	3R_26455782_SNP [dm3] 3R_30630060_SNP [dm6]	T	A	4.913e^-4	0.994	INTERGENIC
2L	15488441	2L_15488441_DEL [dm3] 2L_15488441_DEL [dm6]	CCAGT	C	4.914e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17070353	2R_17070353_SNP [dm3] 2R_21182848_SNP [dm6]	C	G	4.922e^-4	0.994	UPSTREAM tRNA:G3:57BCb & 2 others DOWNSTREAM Pu INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	7698299	3R_7698299_SNP [dm3] 3R_11872577_SNP [dm6]	C	T	4.929e^-4	0.994	INTERGENIC
3R	10995027	3R_10995027_SNP [dm3] 3R_15169305_SNP [dm6]	A	G	4.936e^-4	0.994	INTRON Gyc88E
3R	14296544	3R_14296544_SNP [dm3] 3R_18470822_SNP [dm6]	T	C	4.939e^-4	0.994	INTRON fru
3L	9628506	3L_9628506_SNP [dm3] 3L_9635406_SNP [dm6]	T	C	4.940e^-4	0.994	INTRON fry
2R	16462731	2R_16462731_SNP [dm3] 2R_20575226_SNP [dm6]	A	G	4.951e^-4	0.994	INTRON qsm
2R	16462734	2R_16462734_INS [dm3] 2R_20575229_INS [dm6]	T	TATA	4.951e^-4	0.994	INTRON qsm
3L	10748230	3L_10748230_SNP [dm3] 3L_10755130_SNP [dm6]	G	A	4.956e^-4	0.994	INTERGENIC
3R	24980037	3R_24980037_SNP [dm3] 3R_29154315_SNP [dm6]	T	C	4.961e^-4	0.994	SYNONYMOUS_CODING Rpn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_sens
X	17164433	X_17164433_SNP [dm3] X_17270400_SNP [dm6]	T	G	4.963e^-4	0.994	INTRON f
3R	12616309	3R_12616309_SNP [dm3] 3R_16790587_SNP [dm6]	G	A	4.964e^-4	0.994	DOWNSTREAM Glut3 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8666879	3R_8666879_SNP [dm3] 3R_12841157_SNP [dm6]	T	A	4.964e^-4	0.994	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
X	16066465	X_16066465_SNP [dm3] X_16172432_SNP [dm6]	A	T	4.964e^-4	0.994	INTERGENIC
3L	5395266	3L_5395266_SNP [dm3] 3L_5402166_SNP [dm6]	G	T	4.968e^-4	0.994	INTERGENIC
3R	8678010	3R_8678010_SNP [dm3] 3R_12852288_SNP [dm6]	A	C	4.968e^-4	0.994	INTERGENIC
2L	18100394	2L_18100394_SNP [dm3] 2L_18100394_SNP [dm6]	A	C	4.970e^-4	0.994	INTERGENIC
2R	10304465	2R_10304465_SNP [dm3] 2R_14416960_SNP [dm6]	C	T	4.972e^-4	0.994	INTERGENIC
3L	610740	3L_610740_SNP [dm3] 3L_610740_SNP [dm6]	G	T	4.986e^-4	0.994	INTERGENIC
2L	12086779	2L_12086779_SNP [dm3] 2L_12086779_SNP [dm6]	G	A	4.988e^-4	0.994	UPSTREAM prd DOWNSTREAM CR44592 EXON CR44593	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24724446	3R_24724446_SNP [dm3] 3R_28898724_SNP [dm6]	T	C	4.998e^-4	0.994	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3198146	X_3198146_INS [dm3] X_3304113_INS [dm6]	T	TT	5.006e^-4	0.994	INTRON dnc
3L	14537641	3L_14537641_SNP [dm3] 3L_14544541_SNP [dm6]	T	C	5.006e^-4	0.994	INTRON CG9238
2L	8945997	2L_8945997_DEL [dm3] 2L_8945997_DEL [dm6]	GG	G	5.008e^-4	0.994	INTRON C1GalTA
2L	9069753	2L_9069753_SNP [dm3] 2L_9069753_SNP [dm6]	G	T	5.013e^-4	0.994	INTRON CG31708
2L	11110996	2L_11110996_SNP [dm3] 2L_11110996_SNP [dm6]	A	G	5.022e^-4	0.994	SYNONYMOUS_CODING CG6201 DOWNSTREAM l_2_gd1
3R	26232072	3R_26232072_SNP [dm3] 3R_30406350_SNP [dm6]	A	G	5.026e^-4	0.994	INTERGENIC
2L	21943586	2L_21943586_SNP [dm3] 2L_21943586_SNP [dm6]	C	A	5.026e^-4	0.994	INTERGENIC
4	1034728	4_1034728_SNP [dm3] 4_1014102_SNP [dm6]	G	A	5.036e^-4	0.994	INTRON PlexA
2L	14433861	2L_14433861_SNP [dm3] 2L_14433861_SNP [dm6]	A	G	5.038e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	14850686	2R_14850686_SNP [dm3] 2R_18963181_SNP [dm6]	A	G	5.043e^-4	0.994	INTERGENIC
3R	25440367	3R_25440367_DEL [dm3] 3R_29614645_DEL [dm6]	CG	C	5.044e^-4	0.994	INTRON alph
3L	15632086	3L_15632086_SNP [dm3] 3L_15638986_SNP [dm6]	A	T	5.045e^-4	0.994	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14524778	2R_14524778_SNP [dm3] 2R_18637273_SNP [dm6]	C	A	5.057e^-4	0.994	SYNONYMOUS_CODING CG30122
2L	17160409	2L_17160409_SNP [dm3] 2L_17160409_SNP [dm6]	G	A	5.059e^-4	0.994	INTRON beat-IIIa & 1 other
3L	15632320	3L_15632320_SNP [dm3] 3L_15639220_SNP [dm6]	T	C	5.060e^-4	0.994	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19417259	3L_19417259_SNP [dm3] 3L_19424159_SNP [dm6]	A	G	5.064e^-4	0.994	UPSTREAM CR42838 DOWNSTREAM CG33255 EXON CR32205
3L	6313296	3L_6313296_SNP [dm3] 3L_6320196_SNP [dm6]	C	T	5.069e^-4	0.994	UPSTREAM Or65a INTERGENIC	regulatory region REDfly_CRMs
3R	20575501	3R_20575501_SNP [dm3] 3R_24749779_SNP [dm6]	C	A	5.071e^-4	0.994	UTR_5_PRIME tld DOWNSTREAM tok	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19577394	2R_19577394_SNP [dm3] 2R_23689871_SNP [dm6]	T	C	5.076e^-4	0.994	SYNONYMOUS_CODING Pal2 DOWNSTREAM CG30183
2R	18754043	2R_18754043_SNP [dm3] 2R_22866520_SNP [dm6]	A	G	5.077e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2177901	2L_2177901_SNP [dm3] 2L_2177901_SNP [dm6]	T	C	5.079e^-4	0.994	UTR_5_PRIME aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	10427236	3L_10427236_SNP [dm3] 3L_10434136_SNP [dm6]	G	A	5.104e^-4	0.994	UPSTREAM Ir67c INTERGENIC
2R	14622760	2R_14622760_SNP [dm3] 2R_18735255_SNP [dm6]	C	T	5.105e^-4	0.994	INTRON Hs3st-A
3L	18866728	3L_18866728_SNP [dm3] 3L_18873628_SNP [dm6]	T	C	5.106e^-4	0.994	NON_SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
2R	20200183	2R_20200183_SNP [dm3] 2R_24312660_SNP [dm6]	T	C	5.122e^-4	0.994	UTR_3_PRIME betaTub60D
2R	18835703	2R_18835703_SNP [dm3] 2R_22948180_SNP [dm6]	A	T	5.125e^-4	0.994	INTERGENIC
2R	21062809	2R_21062809_SNP [dm3] 2R_25175286_SNP [dm6]	A	T	5.130e^-4	0.994	UTR_3_PRIME Peb DOWNSTREAM Peb
3R	8525705	3R_8525705_SNP [dm3] 3R_12699983_SNP [dm6]	A	C	5.137e^-4	0.994	INTRON Past1
3L	19218321	3L_19218321_SNP [dm3] 3L_19225221_SNP [dm6]	G	A	5.140e^-4	0.994	INTRON fz2
2L	11170834	2L_11170834_SNP [dm3] 2L_11170834_SNP [dm6]	T	A	5.144e^-4	0.994	UTR_5_PRIME Ca-beta DOWNSTREAM Vm32E INTRON Ca-beta	regulatory region REDfly_CRMs
2R	3076592	2R_3076592_INS [dm3] 2R_7189087_INS [dm6]	C	CC	5.161e^-4	0.994	INTRON pk
2R	21026635	2R_21026635_SNP [dm3] 2R_25139112_SNP [dm6]	C	T	5.164e^-4	0.994	SYNONYMOUS_CODING CG43106 UTR_5_PRIME lov
3R	21991094	3R_21991094_SNP [dm3] 3R_26165372_SNP [dm6]	G	A	5.173e^-4	0.994	INTERGENIC
2L	16736786	2L_16736786_SNP [dm3] 2L_16736786_SNP [dm6]	T	C	5.173e^-4	0.994	SYNONYMOUS_CODING glu
3R	25946923	3R_25946923_SNP [dm3] 3R_30121201_SNP [dm6]	A	G	5.176e^-4	0.994	UTR_3_PRIME sima DOWNSTREAM CG45072
2L	16751277	2L_16751277_SNP [dm3] 2L_16751277_SNP [dm6]	C	A	5.194e^-4	0.994	UTR_3_PRIME CG17912
2L	5922582	2L_5922582_DEL [dm3] 2L_5922582_DEL [dm6]	GTTAGTGC	G	5.196e^-4	0.994	UTR_3_PRIME bchs DOWNSTREAM CG9016
2R	20365146	2R_20365146_SNP [dm3] 2R_24477623_SNP [dm6]	A	G	5.200e^-4	0.994	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3R	14194091	3R_14194091_SNP [dm3] 3R_18368369_SNP [dm6]	C	A	5.201e^-4	0.994	UTR_3_PRIME gl DOWNSTREAM Nup43
3L	1454495	3L_1454495_SNP [dm3] 3L_1454495_SNP [dm6]	T	G	5.208e^-4	0.994	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
X	5752584	X_5752584_SNP [dm3] X_5858551_SNP [dm6]	C	T	5.214e^-4	0.994	INTERGENIC
2L	2138586	2L_2138586_SNP [dm3] 2L_2138586_SNP [dm6]	T	C	5.215e^-4	0.994	INTRON tho2	TF binding site mE1_TFBS_sens
2L	2138589	2L_2138589_SNP [dm3] 2L_2138589_SNP [dm6]	A	T	5.215e^-4	0.994	INTRON tho2	TF binding site mE1_TFBS_sens
X	18690792	X_18690792_SNP [dm3] X_18796759_SNP [dm6]	T	C	5.216e^-4	0.994	UPSTREAM bnb INTRON Pk17E & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13838501	3R_13838501_SNP [dm3] 3R_18012779_SNP [dm6]	T	A	5.222e^-4	0.994	INTRON cpo
2L	3792929	2L_3792929_SNP [dm3] 2L_3792929_SNP [dm6]	C	T	5.228e^-4	0.994	SYNONYMOUS_CODING CG3921
2R	21023075	2R_21023075_SNP [dm3] 2R_25135552_SNP [dm6]	G	C	5.230e^-4	0.994	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	2800160	X_2800160_SNP [dm3] X_2906127_SNP [dm6]	C	A	5.230e^-4	0.994	INTRON kirre
2R	4417096	2R_4417096_SNP [dm3] 2R_8529591_SNP [dm6]	C	G	5.237e^-4	0.994	INTRON mtt	transposable element FlyBase
2L	7107571	2L_7107571_SNP [dm3] 2L_7107571_SNP [dm6]	G	A	5.246e^-4	0.994	INTRON Pvf3
2L	635805	2L_635805_SNP [dm3] 2L_635805_SNP [dm6]	A	T	5.247e^-4	0.994	INTERGENIC
2L	9072041	2L_9072041_SNP [dm3] 2L_9072041_SNP [dm6]	G	T	5.256e^-4	0.994	UPSTREAM CG31708 DOWNSTREAM CR44483 INTERGENIC
3R	25471103	3R_25471103_SNP [dm3] 3R_29645381_SNP [dm6]	G	A	5.262e^-4	0.994	INTRON Dop1R2
2R	8797944	2R_8797944_SNP [dm3] 2R_12910439_SNP [dm6]	T	C	5.263e^-4	0.994	INTERGENIC
2R	8797954	2R_8797954_SNP [dm3] 2R_12910449_SNP [dm6]	T	G	5.263e^-4	0.994	INTERGENIC
3R	17247956	3R_17247956_SNP [dm3] 3R_21422234_SNP [dm6]	A	C	5.264e^-4	0.994	INTRON lbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19158421	2R_19158421_SNP [dm3] 2R_23270898_SNP [dm6]	G	C	5.269e^-4	0.994	NON_SYNONYMOUS_CODING CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
2R	20362876	2R_20362876_SNP [dm3] 2R_24475353_SNP [dm6]	A	G	5.269e^-4	0.994	UPSTREAM CG16837 DOWNSTREAM CG3494 INTRON CG13579
3L	3882191	3L_3882191_SNP [dm3] 3L_3882191_SNP [dm6]	A	C	5.272e^-4	0.994	INTERGENIC
2L	16364715	2L_16364715_SNP [dm3] 2L_16364715_SNP [dm6]	C	G	5.274e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs
3R	25000689	3R_25000689_SNP [dm3] 3R_29174967_SNP [dm6]	T	C	5.274e^-4	0.994	UTR_3_PRIME CG14509 INTRON CG14509
2L	8896660	2L_8896660_SNP [dm3] 2L_8896660_SNP [dm6]	A	C	5.276e^-4	0.994	INTERGENIC
X	15633118	X_15633118_SNP [dm3] X_15739085_SNP [dm6]	T	C	5.287e^-4	0.994	UPSTREAM CG8206 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	6468441	3L_6468441_SNP [dm3] 3L_6475341_SNP [dm6]	G	A	5.288e^-4	0.994	INTRON CG42747
3L	19296816	3L_19296816_SNP [dm3] 3L_19303716_SNP [dm6]	G	A	5.292e^-4	0.994	UTR_3_PRIME pip INTRON pip	TF binding site mE1_TFBS_sens
X	4387775	X_4387775_SNP [dm3] X_4493742_SNP [dm6]	A	G	5.295e^-4	0.994	INTRON CR32773
2R	14459714	2R_14459714_SNP [dm3] 2R_18572209_SNP [dm6]	T	C	5.309e^-4	0.994	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	636635	2L_636635_SNP [dm3] 2L_636635_SNP [dm6]	G	A	5.313e^-4	0.994	INTERGENIC
2L	5061130	2L_5061130_SNP [dm3] 2L_5061130_SNP [dm6]	T	A	5.314e^-4	0.994	UPSTREAM CR45291 INTRON qtc
2L	8491708	2L_8491708_DEL [dm3] 2L_8491708_DEL [dm6]	TC	T	5.316e^-4	0.994	DOWNSTREAM Dh31 & 1 other INTERGENIC
3R	10577627	3R_10577627_SNP [dm3] 3R_14751905_SNP [dm6]	G	T	5.335e^-4	0.994	NON_SYNONYMOUS_CODING CG7362 UPSTREAM smp-30 INTRON jvl
2L	7301524	2L_7301524_SNP [dm3] 2L_7301524_SNP [dm6]	C	G	5.337e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2025748	3L_2025748_SNP [dm3] 3L_2025748_SNP [dm6]	C	T	5.341e^-4	0.994	INTERGENIC
2R	5308368	2R_5308368_SNP [dm3] 2R_9420863_SNP [dm6]	C	T	5.349e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	17749780	2L_17749780_SNP [dm3] 2L_17749780_SNP [dm6]	A	T	5.355e^-4	0.994	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19554283	2L_19554283_SNP [dm3] 2L_19554283_SNP [dm6]	T	C	5.362e^-4	0.994	SYNONYMOUS_CODING Tep4
2R	16515081	2R_16515081_SNP [dm3] 2R_20627576_SNP [dm6]	T	A	5.363e^-4	0.994	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
3L	761982	3L_761982_SNP [dm3] 3L_761982_SNP [dm6]	A	G	5.368e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
3R	4585398	3R_4585398_SNP [dm3] 3R_8759676_SNP [dm6]	A	G	5.369e^-4	0.994	INTRON CG11768 & 1 other
X	12406169	X_12406169_SNP [dm3] X_12512136_SNP [dm6]	C	T	5.373e^-4	0.994	INTRON CG2556
X	8709472	X_8709472_SNP [dm3] X_8815439_SNP [dm6]	C	T	5.375e^-4	0.994	INTERGENIC
3L	10148097	3L_10148097_SNP [dm3] 3L_10154997_SNP [dm6]	C	A	5.376e^-4	0.994	INTRON dpr10
3L	5959230	3L_5959230_SNP [dm3] 3L_5966130_SNP [dm6]	T	A	5.382e^-4	0.994	INTERGENIC
2L	1535487	2L_1535487_INS [dm3] 2L_1535487_INS [dm6]	A	AATGTCTAAGTTTA...	5.423e^-4	0.994	INTERGENIC
2R	7486016	2R_7486016_SNP [dm3] 2R_11598511_SNP [dm6]	G	A	5.431e^-4	0.994	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
2R	6859705	2R_6859705_SNP [dm3] 2R_10972200_SNP [dm6]	C	T	5.448e^-4	0.994	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7298706	2L_7298706_SNP [dm3] 2L_7298706_SNP [dm6]	G	C	5.450e^-4	0.994	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6671225	2R_6671225_SNP [dm3] 2R_10783720_SNP [dm6]	C	A	5.488e^-4	0.994	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	25443202	3R_25443202_SNP [dm3] 3R_29617480_SNP [dm6]	G	A	5.488e^-4	0.994	DOWNSTREAM alph INTERGENIC
2R	13511910	2R_13511910_SNP [dm3] 2R_17624405_SNP [dm6]	C	T	5.489e^-4	0.994	INTRON CG10936
2R	14473813	2R_14473813_SNP [dm3] 2R_18586308_SNP [dm6]	G	A	5.491e^-4	0.994	INTRON GEFmeso	TF binding site mE1_TFBS_sens
2R	15189956	2R_15189956_SNP [dm3] 2R_19302451_SNP [dm6]	T	C	5.497e^-4	0.994	INTRON Tab2
2R	8892616	2R_8892616_SNP [dm3] 2R_13005111_SNP [dm6]	C	A	5.497e^-4	0.994	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13546660	X_13546660_SNP [dm3] X_13652627_SNP [dm6]	C	T	5.498e^-4	0.994	INTRON NFAT	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7175549	3R_7175549_SNP [dm3] 3R_11349827_SNP [dm6]	G	T	5.503e^-4	0.994	SYNONYMOUS_CODING KP78a UTR_5_PRIME KP78b INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	3914449	2L_3914449_SNP [dm3] 2L_3914449_SNP [dm6]	A	T	5.505e^-4	0.994	UPSTREAM CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26116643	3R_26116643_SNP [dm3] 3R_30290921_SNP [dm6]	G	A	5.515e^-4	0.994	INTRON hdc
3R	25465539	3R_25465539_INS [dm3] 3R_29639817_INS [dm6]	T	TGAGGATGT	5.530e^-4	0.994	INTRON Dop1R2
2L	7700332	2L_7700332_SNP [dm3] 2L_7700332_SNP [dm6]	A	G	5.542e^-4	0.994	SYNONYMOUS_CODING Tep2
3L	8796193	3L_8796193_SNP [dm3] 3L_8803093_SNP [dm6]	C	T	5.551e^-4	0.994	NON_SYNONYMOUS_CODING CG34426 UPSTREAM CG13311 DOWNSTREAM CG32023
3R	18614634	3R_18614634_SNP [dm3] 3R_22788912_SNP [dm6]	A	G	5.557e^-4	0.994	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15542121	2R_15542121_SNP [dm3] 2R_19654616_SNP [dm6]	A	T	5.557e^-4	0.994	INTERGENIC
X	7753958	X_7753958_SNP [dm3] X_7859925_SNP [dm6]	T	A	5.561e^-4	0.994	INTERGENIC
3L	16036261	3L_16036261_INS [dm3] 3L_16043161_INS [dm6]	T	TAC	5.564e^-4	0.994	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Stat92E
2R	20995705	2R_20995705_SNP [dm3] 2R_25108182_SNP [dm6]	A	G	5.564e^-4	0.994	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15365379	3R_15365379_SNP [dm3] 3R_19539657_SNP [dm6]	T	C	5.574e^-4	0.994	INTRON Dys
2L	8772630	2L_8772630_SNP [dm3] 2L_8772630_SNP [dm6]	A	G	5.577e^-4	0.994	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
3L	17878409	3L_17878409_SNP [dm3] 3L_17885309_SNP [dm6]	A	C	5.584e^-4	0.994	UPSTREAM CG5506 DOWNSTREAM CG16775 EXON CR42548
2R	17095160	2R_17095160_SNP [dm3] 2R_21207655_SNP [dm6]	A	C	5.593e^-4	0.994	INTRON CG44245 & 1 other
3L	16492515	3L_16492515_SNP [dm3] 3L_16499415_SNP [dm6]	G	A	5.610e^-4	0.994	SYNONYMOUS_CODING st INTRON CG43373	TF binding site mE1_TFBS_cad
X	18198481	X_18198481_SNP [dm3] X_18304448_SNP [dm6]	G	T	5.616e^-4	0.994	DOWNSTREAM os INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10265987	3L_10265987_SNP [dm3] 3L_10272887_SNP [dm6]	A	G	5.633e^-4	0.994	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	8979640	2L_8979640_SNP [dm3] 2L_8979640_SNP [dm6]	A	G	5.634e^-4	0.994	INTRON CG13101
3L	3999846	3L_3999846_SNP [dm3] 3L_3999846_SNP [dm6]	A	G	5.635e^-4	0.994	INTERGENIC
2L	2173053	2L_2173053_SNP [dm3] 2L_2173053_SNP [dm6]	A	T	5.636e^-4	0.994	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	16066613	X_16066613_SNP [dm3] X_16172580_SNP [dm6]	A	G	5.637e^-4	0.994	INTERGENIC
2R	21023673	2R_21023673_SNP [dm3] 2R_25136150_SNP [dm6]	C	T	5.638e^-4	0.994	INTRON lov	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19716717	X_19716717_INS [dm3] X_19822684_INS [dm6]	C	CGATGCTTCCGATG...	5.639e^-4	0.994	DOWNSTREAM skpE INTERGENIC
2R	18691586	2R_18691586_SNP [dm3] 2R_22804081_SNP [dm6]	A	G	5.640e^-4	0.994	UTR_3_PRIME CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15488510	2L_15488510_SNP [dm3] 2L_15488510_SNP [dm6]	T	C	5.643e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	21058777	2R_21058777_SNP [dm3] 2R_25171254_SNP [dm6]	C	T	5.646e^-4	0.994	DOWNSTREAM Sfp60F INTERGENIC
2L	15143125	2L_15143125_SNP [dm3] 2L_15143125_SNP [dm6]	T	G	5.646e^-4	0.994	INTERGENIC
3L	14052948	3L_14052948_SNP [dm3] 3L_14059848_SNP [dm6]	A	G	5.648e^-4	0.994	INTRON CG32138
2R	18984195	2R_18984195_SNP [dm3] 2R_23096672_SNP [dm6]	A	G	5.648e^-4	0.994	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	8842367	2R_8842367_SNP [dm3] 2R_12954862_SNP [dm6]	G	A	5.656e^-4	0.994	SYNONYMOUS_CODING CG13321	TF binding site mE1_TFBS_sens
2R	6717184	2R_6717184_SNP [dm3] 2R_10829679_SNP [dm6]	C	T	5.661e^-4	0.994	SYNONYMOUS_CODING CG12344
3R	9788943	3R_9788943_SNP [dm3] 3R_13963221_SNP [dm6]	A	C	5.664e^-4	0.994	SYNONYMOUS_CODING CG9925	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6822126	2R_6822126_SNP [dm3] 2R_10934621_SNP [dm6]	A	G	5.665e^-4	0.994	INTERGENIC
2L	5160719	2L_5160719_SNP [dm3] 2L_5160719_SNP [dm6]	T	C	5.673e^-4	0.994	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi
2L	8934538	2L_8934538_SNP [dm3] 2L_8934538_SNP [dm6]	C	A	5.674e^-4	0.994	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTRON Tsp29Fa
X	5841605	X_5841605_SNP [dm3] X_5947572_SNP [dm6]	G	A	5.680e^-4	0.994	UTR_3_PRIME CG32756 UPSTREAM CG6041
3L	9813461	3L_9813461_SNP [dm3] 3L_9820361_SNP [dm6]	C	A	5.680e^-4	0.994	UTR_5_PRIME CG43897
3R	25301276	3R_25301276_SNP [dm3] 3R_29475554_SNP [dm6]	C	A	5.681e^-4	0.994	INTRON Ptp99A
3L	2805775	3L_2805775_DEL [dm3] 3L_2805775_DEL [dm6]	TGCATTTTTT	T	5.682e^-4	0.994	INTRON CG43444
2L	10174100	2L_10174100_SNP [dm3] 2L_10174100_SNP [dm6]	T	A	5.685e^-4	0.994	DOWNSTREAM CG13137 INTRON CG44153
3R	16428139	3R_16428139_SNP [dm3] 3R_20602417_SNP [dm6]	A	T	5.685e^-4	0.994	INTRON bon
2R	17967969	2R_17967969_SNP [dm3] 2R_22080464_SNP [dm6]	T	C	5.690e^-4	0.994	UTR_5_PRIME Synj UPSTREAM Synj INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14439065	3L_14439065_SNP [dm3] 3L_14445965_SNP [dm6]	C	A	5.691e^-4	0.994	INTRON bbg	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
2R	8561060	2R_8561060_SNP [dm3] 2R_12673555_SNP [dm6]	G	A	5.691e^-4	0.994	INTRON CG42708	TF binding site mE1_TFBS_cad
3R	25947531	3R_25947531_SNP [dm3] 3R_30121809_SNP [dm6]	A	G	5.698e^-4	0.994	DOWNSTREAM CG45072 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17381734	3R_17381734_SNP [dm3] 3R_21556012_SNP [dm6]	G	T	5.707e^-4	0.994	NON_SYNONYMOUS_CODING slou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	10573458	3R_10573458_SNP [dm3] 3R_14747736_SNP [dm6]	C	T	5.712e^-4	0.994	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	26079370	3R_26079370_SNP [dm3] 3R_30253648_SNP [dm6]	T	C	5.727e^-4	0.994	DOWNSTREAM CG9682 INTRON CG18404
3L	13217714	3L_13217714_SNP [dm3] 3L_13224614_SNP [dm6]	G	A	5.731e^-4	0.994	INTERGENIC
3L	15287022	3L_15287022_SNP [dm3] 3L_15293922_SNP [dm6]	C	T	5.736e^-4	0.994	INTERGENIC
3L	12141929	3L_12141929_SNP [dm3] 3L_12148829_SNP [dm6]	C	T	5.747e^-4	0.994	SYNONYMOUS_CODING Nrx-IV UPSTREAM eap

By genomic position
Variant impact
Gene name

lsm_Week7_Fecundity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results